##fileformat=VCFv4.2 ##fileDate=20201019 ##source=freeBayes v1.3.1-dirty ##reference=reference.fasta ##contig= ##phasing=none ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##FORMAT= ##FORMAT= ##FORMAT= ##FORMAT= ##FORMAT= ##FORMAT= ##FORMAT= ##FORMAT= ##FORMAT= ##FORMAT= #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT LeohisV036_P LeohisV137_P LeohisV238_P LeohisV339_P dDocent_Contig_1 11 . C T 25237.9 . AB=0.528544;ABP=14.0432;AC=4;AF=0.5;AN=8;AO=824;CIGAR=1X2M;DP=1559;DPB=1559;DPRA=0;EPP=1792.3;EPPR=1379.72;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.996359;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=33019;QR=25244;RO=634;RPL=0;RPP=1792.3;RPPR=1379.72;RPR=824;RUN=1;SAF=824;SAP=1792.3;SAR=0;SRF=634;SRP=1379.72;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:430:161,41,224:161:6376:41,224:1637,8994:-692.603,-606.249,-1118.65,0,-389.92,-457.31 0|1:509:227,0,259:227:9058:0,259:0,10385:-787.229,-855.563,-1601.51,0,-745.946,-667.979 0|1:356:136,0,210:136:5453:0,210:0,8398:-650.758,-691.698,-1140.96,0,-449.253,-386.037 0|1:264:110,10,131:110:4357:10,131:384,5242:-398.692,-400.289,-755.857,0,-327.073,-319.154 dDocent_Contig_2 14 . C T 68.2362 . AB=0.113636;ABP=117.111;AC=2;AF=0.25;AN=8;AO=10;CIGAR=1X;DP=196;DPB=196;DPRA=0.814815;EPP=24.725;EPPR=406.904;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=389;QR=7354;RO=186;RPL=0;RPP=24.725;RPPR=406.904;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=186;SRP=406.904;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:40:40,0:40:1587:0:0:0,-12.0412,-143.067 0/0:68:68,0:68:2673:0:0:0,-20.47,-240.689 0/1:50:44,6:44:1744:6:236:-6.55987,0,-142.123 0/1:38:34,4:34:1350:4:153:-2.70029,0,-110.314 dDocent_Contig_3 13 . G T 3612.36 . AB=0.0629371;ABP=477.545;AC=0;AF=0;AN=8;AO=18;CIGAR=1X3M1D3M;DP=286;DPB=267.5;DPRA=0;EPP=42.0968;EPPR=291.816;GTI=0;LEN=1;MEANALT=2.75;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=699;QR=5181;RO=133;RPL=0;RPP=42.0968;RPPR=291.816;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=133;SRP=291.816;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:73:34,7,32:34:1320:7,32:263,1231:-90.8216,-79.5165,-185.865,0,-86.9244,-98.831 0|0:115:58,5,50:58:2258:5,50:203,1894:-137.775,-138.49,-322.56,0,-168.813,-170.505 0|0:63:35,2,23:35:1366:2,23:80,896:-63.0863,-67.0315,-178.712,0,-105.682,-105.349 0|0:35:6,4,24:6:237:4,24:153,935:-75.0429,-64.296,-82.5958,0,-6.96074,-12.2872 dDocent_Contig_4 74 . A C 26343.4 . AB=0.682286;ABP=255.549;AC=5;AF=0.625;AN=8;AO=932;CIGAR=1X;DP=1210;DPB=1210;DPRA=0;EPP=2026.82;EPPR=604.508;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.98927;PAIREDR=0.978339;PAO=0;PQA=0;PQR=0;PRO=0;QA=32240;QR=9683;RO=277;RPL=932;RPP=2026.82;RPPR=604.508;RPR=0;RUN=1;SAF=932;SAP=2026.82;SAR=0;SRF=277;SRP=604.508;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:335:0,335:0:0:335:11582:-1042.3,-100.845,0 0/1:341:62,278:62:2188:278:9596:-760.912,0,-94.478 0/1:333:98,235:98:3394:235:8179:-635.898,0,-205.44 0/1:201:117,84:117:4101:84:2883:-199.198,0,-308.776 dDocent_Contig_5 128 . G A 83.3079 . AB=0.125;ABP=110.498;AC=3;AF=0.375;AN=8;AO=12;CIGAR=1X;DP=105;DPB=105;DPRA=0;EPP=29.068;EPPR=204.957;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=457;QR=3508;RO=93;RPL=0;RPP=29.068;RPPR=204.957;RPR=12;RUN=1;SAF=0;SAP=29.068;SAR=12;SRF=0;SRP=204.957;SRR=93;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:45:39,6:39:1466:6:223:-6.88126,0,-118.663 0/1:30:27,3:27:1007:3:117:-1.87948,0,-81.8993 0/0:17:16,1:16:612:1:39:0,-1.22095,-51.5222 0/1:13:11,2:11:423:2:78:-3.49008,0,-34.5104 dDocent_Contig_6 64 . T A 93.3251 . AB=0.363636;ABP=4.78696;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=130;DPB=130;DPRA=0.277311;EPP=11.6962;EPPR=276.616;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=150;QR=4783;RO=126;RPL=4;RPP=11.6962;RPPR=276.616;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=126;SRP=276.616;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:62:62,0:62:2371:0:0:0,-18.6639,-213.595 0/0:44:44,0:44:1644:0:0:0,-13.2453,-148.217 0/0:13:13,0:13:497:0:0:0,-3.91339,-45.0773 0/1:11:7,4:7:271:4:150:-10.5544,0,-21.4451 dDocent_Contig_7 1 . N G 183.803 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=5;CIGAR=1X;DP=5;DPB=5;DPRA=0;EPP=13.8677;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=6.97229;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=200;QR=0;RO=0;RPL=0;RPP=13.8677;RPPR=0;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:5:0,5:0:0:5:200:-18.3799,-1.50515,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_9 50 . C T 56.0909 . AB=0.12;ABP=65.7224;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=170;DPB=170;DPRA=1.25;EPP=16.0391;EPPR=359.132;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=239;QR=6372;RO=164;RPL=6;RPP=16.0391;RPPR=359.132;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=164;SRP=359.132;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:75:75,0:75:2913:0:0:0,-22.5772,-262.273 0/1:50:44,6:44:1702:6:239:-6.83094,0,-138.359 0/0:32:32,0:32:1237:0:0:0,-9.63296,-111.594 0/0:13:13,0:13:520:0:0:0,-3.91339,-47.1477 dDocent_Contig_10 51 . G T 1322.08 . AB=0.4;ABP=13.8677;AC=4;AF=0.5;AN=8;AO=50;CIGAR=1X;DP=125;DPB=125;DPRA=0;EPP=111.584;EPPR=165.871;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1933;QR=2947;RO=75;RPL=50;RPP=111.584;RPPR=165.871;RPR=0;RUN=1;SAF=50;SAP=111.584;SAR=0;SRF=75;SRP=165.871;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:44:10,34:10:361:34:1328:-106.524,0,-19.5688 0/1:62:52,10:52:2075:10:364:-14.4258,0,-168.265 0/1:9:6,3:6:238:3:122:-8.66322,0,-19.0842 0/1:10:7,3:7:273:3:119:-8.0842,0,-21.9226 dDocent_Contig_11 42 . T C 2460.68 . AB=0.0515464;ABP=341.894;AC=0;AF=0;AN=8;AO=13;CIGAR=2X;DP=619;DPB=619;DPRA=1.22124;EPP=31.2394;EPPR=1071.37;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.993902;PAO=0;PQA=0;PQR=0;PRO=0;QA=512;QR=19551;RO=492;RPL=0;RPP=31.2394;RPPR=1071.37;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=492;SRP=1071.37;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:194:126,10,57:126:4990:10,57:399,2291:-150.863,-155.932,-563.591,0,-377.809,-393.512 0|0:230:184,0,46:184:7314:0,46:0,1852:-97.6486,-153.038,-755.157,0,-602.52,-588.672 0|0:113:108,0,5:108:4291:0,5:0,204:0,-32.5112,-385.752,-15.2724,-368.92,-367.415 0|0:82:74,3,5:74:2956:3,5:113,202:0,-13.0298,-255.569,-5.606,-239.819,-247.57 dDocent_Contig_12 188 . A T 194.202 . AB=0.32;ABP=10.0459;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=206;DPB=206;DPRA=0.414365;EPP=12.7819;EPPR=150.583;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.8182;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=0.984848;PAO=0;PQA=0;PQR=0;PRO=0;QA=309;QR=7703;RO=198;RPL=7;RPP=12.7819;RPPR=166.244;RPR=1;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=3;SRP=407.299;SRR=195;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:42:42,0:42:1604:0:0:0,-12.6433,-144.463 0/0:73:73,0:73:2868:0:0:0,-21.9752,-258.229 0/0:66:66,0:66:2564:0:0:0,-19.868,-230.901 0/1:25:17,8:17:667:8:309:-20.6421,0,-52.8356 dDocent_Contig_13 58 . G A 85.462 . AB=0.307692;ABP=7.18621;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=61;DPB=61;DPRA=0.8125;EPP=11.6962;EPPR=126.784;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=148;QR=2141;RO=57;RPL=4;RPP=11.6962;RPPR=126.784;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:28:28,0:28:1066:0:0:0,-8.42884,-96.2468 0/0:11:11,0:11:401:0:0:0,-3.31133,-36.43 0/1:13:9,4:9:323:4:148:-9.76804,0,-25.4988 0/0:9:9,0:9:351:0:0:0,-2.70927,-31.9518 dDocent_Contig_14 107 . N A 1967.84 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=66;CIGAR=1X;DP=66;DPB=66;DPRA=0;EPP=146.327;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=52.4848;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=0.651515;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=2182;QR=0;RO=0;RPL=0;RPP=146.327;RPPR=0;RPR=66;RUN=1;SAF=0;SAP=146.327;SAR=66;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:34:0,34:0:0:34:1109:-99.7068,-10.235,0 1/1:10:0,10:0:0:10:337:-30.4409,-3.0103,0 1/1:13:0,13:0:0:13:432:-38.5973,-3.91339,0 1/1:9:0,9:0:0:9:304:-27.4366,-2.70927,0 dDocent_Contig_15 9 . T A 269.943 . AB=0.131868;ABP=217.246;AC=2;AF=0.25;AN=8;AO=24;CIGAR=1X;DP=237;DPB=237;DPRA=3.30909;EPP=55.1256;EPPR=465.534;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=928;QR=8150;RO=213;RPL=0;RPP=55.1256;RPPR=465.534;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=213;SRP=465.534;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:27:27,0:27:1039:0:0:0,-8.12781,-93.8172 0/1:150:130,20:130:4973:20:772:-24.6536,0,-402.43 0/1:32:28,4:28:1065:4:156:-4.78433,0,-86.5214 0/0:28:28,0:28:1073:0:0:0,-8.42884,-96.8765 dDocent_Contig_16 12 . G T 56.1898 . AB=0.148148;ABP=32.0437;AC=1;AF=0.125;AN=8;AO=10;CIGAR=1X;DP=154;DPB=154;DPRA=0.782609;EPP=24.725;EPPR=315.702;GTI=0;LEN=1;MEANALT=1;MQM=49.3;MQMR=56.5556;NS=4;NUMALT=1;ODDS=0;PAIRED=0.5;PAIREDR=0.638889;PAO=0;PQA=0;PQR=0;PRO=0;QA=404;QR=5746;RO=144;RPL=0;RPP=24.725;RPPR=315.702;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=144;SRP=315.702;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:46:46,0:46:1833:0:0:0,-13.8474,-162.043 0/0:54:49,5:49:1958:5:204:0,-0.286408,-156.294 0/1:27:23,4:23:920:4:162:-6.83915,0,-72.6464 0/0:27:26,1:26:1035:1:38:0,-6.03632,-89.0411 dDocent_Contig_18 18 . T C 5826.88 . AB=0.731707;ABP=79.4885;AC=5;AF=0.625;AN=8;AO=179;CIGAR=1X;DP=226;DPB=226;DPRA=0;EPP=391.704;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7184;QR=1892;RO=47;RPL=0;RPP=391.704;RPPR=105.07;RPR=179;RUN=1;SAF=179;SAP=391.704;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:85:15,70:15:597:70:2790:-225.616,0,-28.4802 1/1:62:3,59:3:122:59:2368:-201.896,-7.29137,0 0/1:40:16,24:16:646:24:966:-75.1971,0,-46.432 0/1:39:13,26:13:527:26:1060:-83.9459,0,-36.0361 dDocent_Contig_19 49 . T C 69.6567 . AB=0.181818;ABP=22.3561;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=101;DPB=101;DPRA=0.628571;EPP=16.0391;EPPR=209.3;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.666667;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=238;QR=3736;RO=95;RPL=0;RPP=16.0391;RPPR=209.3;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=95;SRP=209.3;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:18,4:18:726:4:157:-7.88526,0,-59.0432 0/0:35:35,0:35:1387:0:0:0,-10.536,-125.093 0/0:29:28,1:28:1094:1:40:0,-4.73419,-94.7423 0/0:15:14,1:14:529:1:41:0,-0.420883,-43.8464 dDocent_Contig_20 51 . C G 299.433 . AB=0.44;ABP=3.79203;AC=1;AF=0.125;AN=8;AO=12;CIGAR=1X;DP=69;DPB=69;DPRA=1.65385;EPP=29.068;EPPR=126.784;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=466;QR=2236;RO=57;RPL=12;RPP=29.068;RPPR=126.784;RPR=0;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:18:17,1:17:682:1:40:0,-1.42286,-57.7134 0/1:25:14,11:14:551:11:426:-31.165,0,-42.4054 0/0:19:19,0:19:731:0:0:0,-5.71957,-66.0973 0/0:7:7,0:7:272:0:0:0,-2.10721,-24.8428 dDocent_Contig_22 15 . G A 861.692 . AB=0.193966;ABP=191.741;AC=4;AF=0.5;AN=8;AO=45;CIGAR=1X;DP=232;DPB=232;DPRA=0;EPP=100.727;EPPR=409.076;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.754;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.994652;PAO=0;PQA=0;PQR=0;PRO=0;QA=1779;QR=7398;RO=187;RPL=0;RPP=100.727;RPPR=409.076;RPR=45;RUN=1;SAF=45;SAP=100.727;SAR=0;SRF=187;SRP=409.076;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:80:69,11:69:2744:11:425:-14.5113,0,-222.991 0/1:57:43,14:43:1714:14:569:-34.3938,0,-137.325 0/1:58:48,10:48:1888:10:401:-18.9861,0,-152.657 0/1:37:27,10:27:1052:10:384:-23.7675,0,-83.2664 dDocent_Contig_23 87 . C A 960.383 . AB=0.487805;ABP=3.11623;AC=3;AF=0.375;AN=8;AO=40;CIGAR=1X1M1X;DP=108;DPB=108;DPRA=1.05128;EPP=89.8692;EPPR=144.156;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1375;QR=2214;RO=65;RPL=40;RPP=89.8692;RPPR=144.156;RPR=0;RUN=1;SAF=40;SAP=89.8692;SAR=0;SRF=65;SRP=144.156;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:26:24,0:24:818:0:0:0,-7.22472,-73.7156 0|1:26:7,19:7:240:19:649:-50.9038,0,-14.1085 0|1:33:20,12:20:685:12:415:-27.6996,0,-51.9882 0|1:23:14,9:14:471:9:311:-21.4015,0,-35.7873 dDocent_Contig_25 14 . T A 10101.2 . AB=0.765133;ABP=255.18;AC=4;AF=0.5;AN=8;AO=316;CIGAR=1X;DP=413;DPB=413;DPRA=0;EPP=689.196;EPPR=213.643;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.968354;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=12663;QR=3900;RO=97;RPL=0;RPP=689.196;RPPR=213.643;RPR=316;RUN=1;SAF=316;SAP=689.196;SAR=0;SRF=97;SRP=213.643;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:111:31,80:31:1263:80:3216:-256.087,0,-80.519 0/1:125:11,114:11:450:114:4518:-368.926,0,-3.22702 0/1:97:29,68:29:1150:68:2746:-218.044,0,-74.5802 0/1:80:26,54:26:1037:54:2183:-172.551,0,-69.5352 dDocent_Contig_26 27 . C A 1454.79 . AB=0.261682;ABP=55.7953;AC=1;AF=0.125;AN=8;AO=28;CIGAR=2X2M1X;DP=107;DPB=107;DPRA=0;EPP=63.8115;EPPR=102.898;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1080;QR=1840;RO=46;RPL=0;RPP=63.8115;RPPR=102.898;RPR=28;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:39:17,2,20,0:17:681:2,20,0:80,768,0:-57.8972,-56.4231,-111.933,0,-49.5148,-50.0843,-63.0147,-112.535,-56.1049,-119.126 0|0:22:13,0,4,5:13:522:0,4,5:0,155,203:-12.839,-16.7524,-59.7679,-4.02834,-47.0384,-45.8343,0,-43.024,-30.295,-41.5188 0|0:32:9,0,2,21:9:354:0,2,21:0,78,832:-65.771,-68.4803,-97.5986,-62.0692,-91.1873,-90.5852,0,-29.1216,-22.7106,-22.8 0|0:14:7,0,2,5:7:283:0,2,5:0,79,201:-14.4616,-16.5688,-39.9033,-10.0698,-33.4035,-32.8014,0,-23.3395,-16.8406,-21.8344 dDocent_Contig_27 27 . T A 987.51 . AB=0.289855;ABP=55.9439;AC=2;AF=0.25;AN=8;AO=43;CIGAR=1X;DP=210;DPB=210;DPRA=0;EPP=96.3836;EPPR=365.646;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1701;QR=6654;RO=167;RPL=0;RPP=96.3836;RPPR=365.646;RPR=43;RUN=1;SAF=43;SAP=96.3836;SAR=0;SRF=167;SRP=365.646;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:42:40,2:40:1600:2:81:0,-4.95753,-136.551 0/1:79:52,27:52:2088:27:1072:-72.9865,0,-164.324 0/1:59:46,13:46:1834:13:507:-28.2083,0,-147.51 0/0:30:29,1:29:1132:1:41:0,-4.93633,-98.0784 dDocent_Contig_44 98 . N C 2466.95 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=83;CIGAR=1X;DP=83;DPB=83;DPRA=0;EPP=183.243;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=49.0361;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=0.879518;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=2801;QR=0;RO=0;RPL=83;RPP=183.243;RPPR=0;RPR=0;RUN=1;SAF=83;SAP=183.243;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:33:0,33:0:0:33:1143:-101.994,-9.93399,0 1/1:25:0,25:0:0:25:856:-75.1672,-7.52575,0 1/1:11:0,11:0:0:11:338:-30.211,-3.31133,0 1/1:14:0,14:0:0:14:464:-38.7209,-4.21442,0 dDocent_Contig_47 126 . T A 7504.16 . AB=0.517241;ABP=4.50787;AC=4;AF=0.5;AN=8;AO=300;CIGAR=1X;DP=580;DPB=580;DPRA=0;EPP=654.452;EPPR=602.337;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=10318;QR=9293;RO=276;RPL=0;RPP=654.452;RPPR=602.337;RPR=300;RUN=1;SAF=0;SAP=654.452;SAR=300;SRF=0;SRP=602.337;SRR=276;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:202:101,101:101:3416:101:3509:-255.231,0,-246.862 0/1:171:82,85:82:2756:85:2934:-213.686,0,-197.67 0/1:132:68,64:68:2251:64:2132:-152.408,0,-163.116 0/1:75:25,50:25:870:50:1743:-134.581,0,-56.041 dDocent_Contig_48 44 . G A 44.4665 . AB=0.109375;ABP=87.8334;AC=2;AF=0.25;AN=8;AO=7;CIGAR=1X;DP=110;DPB=110;DPRA=1.3913;EPP=18.2106;EPPR=226.672;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=282;QR=3997;RO=103;RPL=0;RPP=18.2106;RPPR=226.672;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=103;SRP=226.672;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:34:34,0:34:1322:0:0:0,-10.235,-119.242 0/1:38:34,4:34:1278:4:163:-3.61929,0,-103.84 0/1:26:23,3:23:917:3:119:-3.26823,0,-75.0056 0/0:12:12,0:12:480:0:0:0,-3.61236,-43.5497 dDocent_Contig_50 7 . G T 5250.79 . AB=0.679389;ABP=76.2436;AC=4;AF=0.5;AN=8;AO=178;CIGAR=1X;DP=262;DPB=262;DPRA=0;EPP=389.532;EPPR=185.414;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.91573;PAIREDR=0.964286;PAO=0;PQA=0;PQR=0;PRO=0;QA=6760;QR=2627;RO=84;RPL=0;RPP=389.532;RPPR=185.414;RPR=178;RUN=1;SAF=178;SAP=389.532;SAR=0;SRF=84;SRP=185.414;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:77:20,57:20:623:57:2189:-174.055,0,-33.1739 0/1:59:14,45:14:455:45:1682:-133.882,0,-23.4917 0/1:76:33,43:33:1040:43:1625:-123.632,0,-70.9908 0/1:50:17,33:17:509:33:1264:-98.9996,0,-31.0388 dDocent_Contig_51 49 . A C 33.3979 . AB=0.166667;ABP=20.3821;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=76;DPB=76;DPRA=0.931034;EPP=9.52472;EPPR=161.528;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=107;QR=2881;RO=73;RPL=0;RPP=9.52472;RPPR=161.528;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=73;SRP=161.528;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:22:22,0:22:868:0:0:0,-6.62266,-78.4265 0/0:21:21,0:21:830:0:0:0,-6.32163,-75.0163 0/1:18:15,3:15:594:3:107:-4.56144,0,-48.3771 0/0:15:15,0:15:589:0:0:0,-4.51545,-53.3475 dDocent_Contig_52 30 . T A 2114.3 . AB=0.373786;ABP=31.5135;AC=4;AF=0.5;AN=8;AO=77;CIGAR=1X;DP=206;DPB=206;DPRA=0;EPP=170.214;EPPR=283.13;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3085;QR=5187;RO=129;RPL=0;RPP=170.214;RPPR=283.13;RPR=77;RUN=1;SAF=77;SAP=170.214;SAR=0;SRF=129;SRP=283.13;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:47:21,26:21:845:26:1030:-78.845,0,-62.2151 0/1:73:61,12:61:2458:12:487:-22.2065,0,-199.384 0/1:52:32,20:32:1281:20:803:-56.9333,0,-99.9004 0/1:34:15,19:15:603:19:765:-58.9346,0,-44.374 dDocent_Contig_53 209 . N G 187.444 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=5;CIGAR=1X;DP=5;DPB=5;DPRA=0;EPP=13.8677;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=6.97229;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=204;QR=0;RO=0;RPL=5;RPP=13.8677;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:5:0,5:0:0:5:204:-18.744,-1.50515,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_54 134 . C T 49.1185 . AB=0.147059;ABP=39.7976;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=168;DPB=168;DPRA=0.569892;EPP=18.2106;EPPR=194.005;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.869565;PAO=0;PQA=0;PQR=0;PRO=0;QA=249;QR=5366;RO=161;RPL=0;RPP=18.2106;RPPR=352.617;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=21;SRP=194.005;SRR=140;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:62:62,0:62:2039:0:0:0,-18.6639,-183.777 0/0:48:47,1:47:1612:1:35:0,-10.9508,-141.848 0/1:34:29,5:29:961:5:178:-6.1337,0,-76.5492 0/0:24:23,1:23:754:1:36:0,-3.62644,-64.5684 dDocent_Contig_55 37 . C T 146.833 . AB=0.195122;ABP=36.112;AC=2;AF=0.25;AN=8;AO=8;CIGAR=1X;DP=66;DPB=66;DPRA=1.64;EPP=20.3821;EPPR=128.956;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=316;QR=2312;RO=58;RPL=0;RPP=20.3821;RPPR=128.956;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:16:16,0:16:649:0:0:0,-4.81648,-58.7435 0/1:31:24,7:24:965:7:276:-15.8747,0,-77.8194 0/1:10:9,1:9:360:1:40:-0.985379,0,-29.7519 0/0:9:9,0:9:338:0:0:0,-2.70927,-30.7599 dDocent_Contig_56 7 . T A 933.106 . AB=0.240437;ABP=110.101;AC=4;AF=0.5;AN=8;AO=44;CIGAR=1X2M1X;DP=183;DPB=183;DPRA=0;EPP=98.5551;EPPR=304.845;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1694;QR=5306;RO=139;RPL=0;RPP=98.5551;RPPR=304.845;RPR=44;RUN=1;SAF=44;SAP=98.5551;SAR=0;SRF=139;SRP=304.845;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:69:61,8:61:2321:8:312:-7.67385,0,-188.332 0|1:39:35,4:35:1347:4:155:-2.58527,0,-109.776 0|1:55:31,24:31:1176:24:919:-66.47,0,-89.5809 0|1:20:12,8:12:462:8:308:-22.0616,0,-35.9103 dDocent_Contig_57 17 . A T 12712.6 . AB=0.126866;ABP=327.111;AC=1;AF=0.125;AN=8;AO=34;CIGAR=2X;DP=421;DPB=421;DPRA=0.583878;EPP=76.8404;EPPR=74.6689;GTI=0;LEN=1;MEANALT=2;MQM=59.2941;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1364;QR=1304;RO=33;RPL=0;RPP=76.8404;RPPR=74.6689;RPR=34;RUN=1;SAF=34;SAP=76.8404;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:153:0,0,153:0:0:0,153:0,6096:-548.4,-548.4,-548.4,-46.0576,-46.0576,0 0|0:149:19,2,128:19:753:2,128:82,5138:-417.049,-416,-477.375,0,-55.1956,-23.4332 1|0:93:7,29,57:7:270:29,57:1161,2271:-258.271,-164.832,-178.27,-73.3909,0,-78.3985 0|0:26:7,3,16:7:281:3,16:121,650:-51.5059,-43.6396,-65.8885,0,-13.1776,-18.3357 dDocent_Contig_58 209 . N G 156.799 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=162;QR=0;RO=0;RPL=4;RPP=11.6962;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:1:0,1:0:0:1:41:-4.09457,-0.30103,0 ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:121:-11.2802,-0.90309,0 dDocent_Contig_59 7 . C T 5953.04 . AB=0.620795;ABP=44.4542;AC=4;AF=0.5;AN=8;AO=203;CIGAR=1X;DP=327;DPB=327;DPRA=0;EPP=443.819;EPPR=270.101;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.990148;PAIREDR=0.98374;PAO=0;PQA=0;PQR=0;PRO=0;QA=7758;QR=4739;RO=123;RPL=0;RPP=443.819;RPPR=270.101;RPR=203;RUN=1;SAF=203;SAP=443.819;SAR=0;SRF=123;SRP=270.101;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:122:36,86:36:1389:86:3309:-261.227,0,-88.5659 0/1:100:41,59:41:1579:59:2263:-173.788,0,-112.275 0/1:80:36,43:36:1396:43:1610:-121.122,0,-101.876 0/1:25:10,15:10:375:15:576:-44.6563,0,-26.5727 dDocent_Contig_60 125 . T A 195.462 . AB=0.172043;ABP=89.8925;AC=2;AF=0.25;AN=8;AO=17;CIGAR=1X;DP=243;DPB=243;DPRA=0.84058;EPP=39.9253;EPPR=493.763;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=583;QR=7568;RO=226;RPL=0;RPP=39.9253;RPPR=493.763;RPR=17;RUN=1;SAF=0;SAP=39.9253;SAR=17;SRF=0;SRP=493.763;SRR=226;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:69:69,0:69:2270:0:0:0,-20.7711,-204.56 0/0:81:80,1:80:2694:1:35:0,-20.8848,-239.218 0/1:57:48,9:48:1631:9:312:-11.2575,0,-129.919 0/1:36:29,7:29:973:7:236:-10.7324,0,-77.0359 dDocent_Contig_61 19 . A G 442.574 . AB=0.147619;ABP=229.505;AC=2;AF=0.25;AN=8;AO=33;CIGAR=1X2M1X;DP=345;DPB=345;DPRA=1.00388;EPP=74.6689;EPPR=678.338;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1296;QR=12372;RO=311;RPL=0;RPP=74.6689;RPPR=678.338;RPR=33;RUN=1;SAF=33;SAP=74.6689;SAR=0;SRF=311;SRP=678.338;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:86:78,8:78:3118:8:321:-3.36954,0,-254.82 0|1:124:100,23:100:3972:23:894:-43.3301,0,-320.052 0|0:86:86,0:86:3412:0:0:0,-25.8886,-307.143 0|0:49:47,2:47:1870:2:81:0,-7.06474,-160.828 dDocent_Contig_62 25 . T C 13123.4 . AB=0.875536;ABP=573.837;AC=4;AF=0.5;AN=8;AO=408;CIGAR=1X;DP=466;DPB=466;DPRA=0;EPP=888.971;EPPR=128.956;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=2.77556e-17;PAIRED=0.980392;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=16200;QR=2321;RO=58;RPL=0;RPP=888.971;RPPR=128.956;RPR=408;RUN=1;SAF=408;SAP=888.971;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:139:17,122:17:688:122:4882:-397.426,0,-20.4053 0/1:128:11,117:11:440:117:4614:-376.653,0,-1.42081 0/1:128:20,108:20:791:108:4305:-348.879,0,-32.9762 0/1:71:10,61:10:402:61:2399:-194.694,0,-15.1658 dDocent_Contig_63 7 . T A 4848.19 . AB=0.0714286;ABP=181.691;AC=0;AF=0;AN=8;AO=8;CIGAR=1M3X1M3D1M;DP=242;DPB=175.667;DPRA=0;EPP=20.3821;EPPR=96.3836;GTI=0;LEN=1;MEANALT=4;MQM=42;MQMR=60;NS=4;NUMALT=4;ODDS=0;PAIRED=0;PAIREDR=0.860465;PAO=0;PQA=0;PQR=0;PRO=0;QA=301;QR=1627;RO=43;RPL=0;RPP=20.3821;RPPR=96.3836;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:64:11,0,0,4,48:11:419:0,0,4,48:0,0,158,1767:-140.604,-143.915,-178.287,-143.915,-178.287,-178.287,-130.912,-165.284,-165.284,-164.08,0,-34.3699,-34.3699,-21.3645,-19.9205 0|0:72:14,6,4,2,44:14:528:6,4,2,44:227,151,82,1641:-130.121,-115.913,-157.378,-122.377,-147.225,-164.443,-127.566,-152.415,-158.878,-170.235,0,-24.8506,-31.3149,-36.5017,-30.0272 0|0:66:10,2,0,4,50:10:388:2,0,4,50:66,0,164,1882:-151.185,-149.238,-180.517,-154.195,-181.119,-186.077,-140.656,-167.581,-172.538,-171.334,0,-26.9379,-31.8872,-18.3422,-16.8357 0|0:40:8,4,4,0,24:8:292:4,4,0,24:154,150,0,874:-68.3995,-58.3935,-81.0431,-59.1707,-70.61,-81.8197,-70.8077,-82.2473,-83.0238,-94.6609,0,-11.4354,-12.2168,-23.8515,-16.6267 dDocent_Contig_64 32 . G A 841.19 . AB=0.162939;ABP=311.88;AC=2;AF=0.25;AN=8;AO=60;CIGAR=1X;DP=622;DPB=622;DPRA=0;EPP=133.299;EPPR=1223.38;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2347;QR=21714;RO=562;RPL=0;RPP=133.299;RPPR=1223.38;RPR=60;RUN=1;SAF=60;SAP=133.299;SAR=0;SRF=562;SRP=1223.38;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:131:117,14:117:4511:14:545:-9.95928,0,-366.59 0/1:182:145,37:145:5549:37:1457:-76.6035,0,-444.572 0/0:204:200,4:200:7779:4:155:0,-47.0854,-685.511 0/0:105:100,5:100:3875:5:190:0,-14.1408,-331.346 dDocent_Contig_66 25 . G A 159.357 . AB=0.148649;ABP=82.3571;AC=2;AF=0.25;AN=8;AO=15;CIGAR=1X;DP=163;DPB=163;DPRA=0;EPP=35.5824;EPPR=320.045;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.890411;PAO=0;PQA=0;PQR=0;PRO=0;QA=604;QR=5854;RO=146;RPL=0;RPP=35.5824;RPPR=320.045;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=146;SRP=320.045;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:36:34,2:34:1367:2:81:0,-3.15135,-115.601 0/0:53:51,2:51:2053:2:82:0,-8.17491,-177.174 0/1:47:39,6:39:1553:6:244:-8.40243,0,-126.076 0/1:27:22,5:22:881:5:197:-9.97698,0,-71.4683 dDocent_Contig_67 18 . C A 30.8046 . AB=0.0963855;ABP=120.453;AC=1;AF=0.125;AN=8;AO=11;CIGAR=1X;DP=233;DPB=233;DPRA=0;EPP=26.8965;EPPR=485.077;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.363636;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=436;QR=8905;RO=222;RPL=0;RPP=26.8965;RPPR=485.077;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=222;SRP=485.077;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:83:75,8:75:3001:8:318:-4.00084,0,-245.195 0/0:85:84,1:84:3393:1:36:0,-21.9893,-301.809 0/0:46:45,1:45:1802:1:41:0,-9.75281,-158.296 0/0:19:18,1:18:709:1:41:0,-1.625,-60.0432 dDocent_Contig_68 8 . T A 89.1498 . AB=0.112069;ABP=154.639;AC=2;AF=0.25;AN=8;AO=28;CIGAR=1X;DP=366;DPB=366;DPRA=0;EPP=63.8115;EPPR=736.968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=58.787;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.881657;PAO=0;PQA=0;PQR=0;PRO=0;QA=1046;QR=12999;RO=338;RPL=0;RPP=63.8115;RPPR=736.968;RPR=28;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=338;SRP=736.968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:194:182,12:182:7014:12:427:0,-19.6401,-591.929 0/1:67:60,7:60:2312:7:273:-4.769,0,-187.689 0/1:49:43,6:43:1617:6:233:-6.58961,0,-130.638 0/0:56:53,3:53:2056:3:113:0,-6.31871,-174.542 dDocent_Contig_70 23 . C A 1229.76 . AB=0.193182;ABP=290.829;AC=4;AF=0.5;AN=8;AO=68;CIGAR=1X;DP=352;DPB=352;DPRA=0;EPP=150.67;EPPR=619.708;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2590;QR=11339;RO=284;RPL=0;RPP=150.67;RPPR=619.708;RPR=68;RUN=1;SAF=68;SAP=150.67;SAR=0;SRF=284;SRP=619.708;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:116:102,14:102:4080:14:538:-13.8457,0,-332.249 0/1:92:75,17:75:3036:17:628:-29.1493,0,-245.617 0/1:90:64,26:64:2538:26:996:-62.8536,0,-201.46 0/1:54:43,11:43:1685:11:428:-22.617,0,-135.612 dDocent_Contig_72 15 . T A 1280.04 . AB=0.227451;ABP=167.54;AC=4;AF=0.5;AN=8;AO=58;CIGAR=1X;DP=255;DPB=255;DPRA=0;EPP=128.956;EPPR=430.79;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2321;QR=7816;RO=197;RPL=0;RPP=128.956;RPPR=430.79;RPR=58;RUN=1;SAF=58;SAP=128.956;SAR=0;SRF=197;SRP=430.79;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:83:52,31:52:2078:31:1232:-86.1662,0,-162.218 0/1:114:103,11:103:4084:11:443:-5.90828,0,-333.219 0/1:35:25,10:25:971:10:400:-25.8231,0,-77.1425 0/1:23:17,6:17:683:6:246:-15.5964,0,-54.8732 dDocent_Contig_73 46 . T G 3045.05 . AB=0.729323;ABP=63.7625;AC=4;AF=0.5;AN=8;AO=97;CIGAR=1X;DP=133;DPB=133;DPRA=0;EPP=213.643;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3876;QR=1414;RO=36;RPL=0;RPP=213.643;RPPR=81.1833;RPR=97;RUN=1;SAF=97;SAP=213.643;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:41:15,26:15:582:26:1045:-81.9994,0,-40.3727 0/1:38:11,27:11:434:27:1074:-85.5063,0,-27.9738 0/1:33:7,26:7:277:26:1037:-83.6855,0,-15.3642 0/1:21:3,18:3:121:18:720:-58.8032,0,-4.95836 dDocent_Contig_74 81 . C T 10740 . AB=0.0716981;ABP=425.251;AC=1;AF=0.125;AN=8;AO=27;CIGAR=3M1X1M;DP=482;DPB=561.2;DPRA=0;EPP=61.6401;EPPR=128.956;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=954;QR=1991;RO=58;RPL=27;RPP=61.6401;RPPR=128.956;RPR=0;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:217:19,189,8:19:656:189,8:6303,281:-508.052,-3.59827,0,-490.899,-34.0216,-541.791 0|0:120:29,87,4:29:991:87,4:2953,140:-230.748,0,-54.2311,-228.087,-69.0291,-307.311 0|1:93:5,75,12:5:175:75,12:2484,425:-219.787,-20.3953,-12.058,-186.669,0,-197.296 0|0:52:5,44,3:5:169:44,3:1479,108:-118.293,0,-0.44057,-110.984,-4.86541,-123.781 dDocent_Contig_75 25 . G A 199.737 . AB=0.458333;ABP=3.37221;AC=2;AF=0.25;AN=8;AO=11;CIGAR=1X;DP=43;DPB=43;DPRA=1.26316;EPP=26.8965;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=30;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=431;QR=1290;RO=32;RPL=0;RPP=26.8965;RPPR=72.4974;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:13:13,0:13:532:0:0:0,-3.91339,-48.2261 0/0:6:6,0:6:244:0:0:0,-1.80618,-22.3388 0/1:15:7,8:7:282:8:310:-16.8348,0,-21.2369 0/1:9:6,3:6:232:3:121:-5.58258,0,-18.5367 dDocent_Contig_76 17 . T G 3265.31 . AB=0.275574;ABP=212.564;AC=4;AF=0.5;AN=8;AO=132;CIGAR=1X2M3X1M;DP=479;DPB=481;DPRA=0;EPP=289.645;EPPR=643.595;GTI=0;LEN=1;MEANALT=3.75;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=0.989831;PAO=0;PQA=0;PQR=0;PRO=0;QA=5122;QR=11557;RO=295;RPL=0;RPP=289.645;RPPR=643.595;RPR=132;RUN=1;SAF=132;SAP=289.645;SAR=0;SRF=295;SRP=643.595;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:179:105,63,4,0:105:4100:63,4,0:2442,163,0:-169,0,-318.066,-187.16,-323.583,-522.994,-200.608,-337.031,-524.198,-537.645 0|1:102:75,24,2,0:75:2948:24,2,0:938,81,0:-54.5249,0,-235.242,-70.422,-235.787,-312.301,-77.1022,-242.467,-312.903,-319.582 0|1:144:84,30,1,23:84:3291:30,1,23:1152,40,901:-69.269,0,-261.588,-91.2602,-267.324,-361.575,-20.4674,-196.536,-287.793,-284.165 0|1:54:31,15,7,0:31:1218:15,7,0:590,265,0:-39.2265,0,-95.6984,-26.8356,-78.492,-124.92,-48.5584,-100.214,-127.027,-148.749 dDocent_Contig_77 60 . G T 277.207 . AB=0.276596;ABP=23.3852;AC=3;AF=0.375;AN=8;AO=13;CIGAR=1X;DP=72;DPB=72;DPRA=0.626667;EPP=31.2394;EPPR=131.127;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.966102;PAO=0;PQA=0;PQR=0;PRO=0;QA=497;QR=2362;RO=59;RPL=13;RPP=31.2394;RPPR=131.127;RPR=0;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=59;SRP=131.127;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:15,5:15:599:5:201:-12.4505,0,-48.2268 0/0:25:25,0:25:1003:0:0:0,-7.52575,-90.5641 0/1:16:10,6:10:406:6:217:-15.0503,0,-32.0839 0/1:11:9,2:9:354:2:79:-4.1863,0,-28.9079 dDocent_Contig_78 30 . C A 295.854 . AB=0.0993151;ABP=817.402;AC=2;AF=0.25;AN=8;AO=68;CIGAR=1X;DP=1276;DPB=1276;DPRA=1.33464;EPP=150.67;EPPR=2623.98;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.996686;PAO=0;PQA=0;PQR=0;PRO=0;QA=2686;QR=47280;RO=1207;RPL=0;RPP=150.67;RPPR=2623.98;RPR=68;RUN=1;SAF=68;SAP=150.67;SAR=0;SRF=1207;SRP=2623.98;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:358:323,35:323:12671:35:1394:-17.9474,0,-1031.82 0/0:437:427,10:427:16676:10:382:0,-96.8234,-1464.94 0/1:226:202,23:202:7918:23:910:-14.0817,0,-644.138 0/0:255:255,0:255:10015:0:0:0,-76.7626,-900.79 dDocent_Contig_79 79 . C A 205.531 . AB=0.22449;ABP=35.3165;AC=1;AF=0.125;AN=8;AO=16;CIGAR=1X;DP=173;DPB=173;DPRA=0;EPP=37.7539;EPPR=343.931;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=557;QR=5469;RO=157;RPL=16;RPP=37.7539;RPPR=343.931;RPR=0;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=157;SRP=343.931;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:47:45,2:45:1557:2:59:0,-8.54554,-134.809 0/0:56:54,2:54:1890:2:59:0,-11.2548,-164.761 0/1:49:38,11:38:1338:11:402:-21.775,0,-105.962 0/0:21:20,1:20:684:1:37:0,-2.6238,-58.1744 dDocent_Contig_80 52 . A C 2412.05 . 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AB=0.0721649;ABP=311.449;AC=1;AF=0.125;AN=8;AO=14;CIGAR=7M1X2M;DP=194;DPB=187.1;DPRA=0;EPP=33.4109;EPPR=46.4397;GTI=0;LEN=1;MEANALT=4.5;MQM=60;MQMR=60;NS=4;NUMALT=4;ODDS=0;PAIRED=0;PAIREDR=0.9;PAO=0;PQA=0;PQR=0;PRO=0;QA=556;QR=775;RO=20;RPL=0;RPP=33.4109;RPPR=46.4397;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:64:11,2,3,45,2:11:422:2,3,45,2:78,115,1723,80:-138.08,-134.979,-169.013,-131.953,-160.177,-165.685,0,-28.2194,-25.1942,-21.0853,-134.801,-163.024,-159.998,-28.0399,-168.834 0|1:65:6,4,6,41,7:6:236:4,6,41,7:154,241,1557,278:-129.337,-118.499,-136.709,-111.283,-118.052,-128.891,-3.47304,-10.2433,-3.02505,-10.5438,-108.256,-115.026,-107.81,0,-125.564 0|0:42:0,2,12,23,3:0:0:2,12,23,3:78,458,874,120:-109.263,-102.85,-102.248,-71.6959,-65.283,-68.0836,-37.5819,-31.168,0,-30.6582,-99.3757,-92.9631,-61.8078,-27.6914,-98.4726 0|0:23:3,2,0,16,2:3:117:2,0,16,2:75,0,612,78:-49.316,-44.0766,-53.0932,-50.2191,-53.6952,-59.8377,0,-3.4818,-9.62084,-4.80436,-43.8072,-47.2835,-53.426,-3.20805,-52.824 dDocent_Contig_82 18 . A G 360.27 . AB=0.188679;ABP=92.2455;AC=2;AF=0.25;AN=8;AO=22;CIGAR=1X;DP=193;DPB=193;DPRA=0.880503;EPP=50.7827;EPPR=374.332;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=853;QR=6706;RO=171;RPL=0;RPP=50.7827;RPPR=374.332;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=171;SRP=374.332;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:57:42,15:42:1657:15:591:-36.3698,0,-132.218 0/0:53:53,0:53:2081:0:0:0,-15.9546,-187.496 0/1:49:44,5:44:1704:5:183:-2.07113,0,-138.855 0/0:34:32,2:32:1264:2:79:0,-2.73778,-106.541 dDocent_Contig_83 48 . C T 3621.43 . AB=0.673913;ABP=27.1797;AC=6;AF=0.75;AN=8;AO=108;CIGAR=1X;DP=138;DPB=138;DPRA=0;EPP=237.529;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4346;QR=1196;RO=30;RPL=0;RPP=237.529;RPPR=68.1545;RPR=108;RUN=1;SAF=108;SAP=237.529;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:22:0,22:0:0:22:899:-81.2135,-6.62266,0 0/1:69:21,48:21:846:48:1911:-151.42,0,-55.6774 1/1:24:0,24:0:0:24:966:-87.2357,-7.22472,0 0/1:23:9,14:9:350:14:570:-44.7179,0,-24.9303 dDocent_Contig_84 77 . T G 276.258 . AB=0.258621;ABP=32.3626;AC=3;AF=0.375;AN=8;AO=15;CIGAR=1X;DP=87;DPB=87;DPRA=0.666667;EPP=35.5824;EPPR=159.356;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=522;QR=2534;RO=72;RPL=15;RPP=35.5824;RPPR=159.356;RPR=0;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=72;SRP=159.356;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:29:29,0:29:1023:0:0:0,-8.72987,-92.382 0/1:26:20,6:20:708:6:209:-11.3243,0,-56.2191 0/1:22:14,8:14:493:8:278:-18.7353,0,-38.08 0/1:10:9,1:9:310:1:35:-0.488329,0,-25.2226 dDocent_Contig_85 189 . C G 218.654 . AB=0.347826;ABP=7.63648;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X;DP=87;DPB=87;DPRA=2.22222;EPP=22.5536;EPPR=172.385;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=367;QR=3151;RO=78;RPL=9;RPP=22.5536;RPPR=172.385;RPR=0;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=172.385;SRR=78;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:15,8:15:608:8:326:-22.7862,0,-48.1335 0/0:37:36,1:36:1470:1:41:0,-7.04354,-128.443 0/0:20:20,0:20:814:0:0:0,-6.0206,-73.5741 0/0:7:7,0:7:259:0:0:0,-2.10721,-23.6594 dDocent_Contig_86 107 . N G 56.0751 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=4.89285;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=59;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:59:-5.60426,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_87 21 . T G 53918 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=1554;CIGAR=1X;DP=1596;DPB=1596;DPRA=0;EPP=3377.48;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=59.9974;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.998713;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=61625;QR=1656;RO=42;RPL=0;RPP=3377.48;RPPR=94.2121;RPR=1554;RUN=1;SAF=1554;SAP=3377.48;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:510:10,500:10:400:500:19770:-1741.33,-117.166,0 1/1:452:18,434:18:693:434:17245:-1488,-73.3708,0 1/1:438:5,433:5:202:433:17156:-1524.13,-113.289,0 1/1:196:9,187:9:361:187:7454:-637.641,-26.1498,0 dDocent_Contig_88 19 . G T 47.9627 . AB=0.103896;ABP=107.946;AC=1;AF=0.125;AN=8;AO=10;CIGAR=1X;DP=297;DPB=297;DPRA=1.0625;EPP=24.725;EPPR=626.223;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.996516;PAO=0;PQA=0;PQR=0;PRO=0;QA=398;QR=11351;RO=287;RPL=0;RPP=24.725;RPPR=626.223;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=287;SRP=626.223;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:77:69,8:69:2715:8:317:-5.71708,0,-221.308 0/0:120:120,0:120:4772:0:0:0,-36.1236,-429.403 0/0:76:74,2:74:2916:2:81:0,-15.1925,-254.866 0/0:24:24,0:24:948:0:0:0,-7.22472,-85.6253 dDocent_Contig_89 115 . C T 10522.4 . AB=0.83737;ABP=288.72;AC=5;AF=0.625;AN=8;AO=377;CIGAR=1X;DP=425;DPB=425;DPRA=0;EPP=821.655;EPPR=100.727;GTI=0;LEN=1;MEANALT=1.75;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=12686;QR=1534;RO=45;RPL=0;RPP=821.655;RPPR=100.727;RPR=377;RUN=1;SAF=0;SAP=821.655;SAR=377;SRF=0;SRP=100.727;SRR=45;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:148:16,131:16:540:131:4347:-346.815,0,-4.30969 1/1:136:0,135:0:0:135:4569:-411.03,-40.6391,0 0/1:61:21,39:21:721:39:1339:-102.671,0,-47.0658 0/1:80:8,72:8:273:72:2431:-194.967,0,-0.820348 dDocent_Contig_90 7 . A T 4759.09 . AB=0.697368;ABP=80.1547;AC=4;AF=0.5;AN=8;AO=159;CIGAR=1X;DP=228;DPB=228;DPRA=0;EPP=348.274;EPPR=148.499;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6096;QR=2590;RO=67;RPL=0;RPP=348.274;RPPR=148.499;RPR=159;RUN=1;SAF=159;SAP=348.274;SAR=0;SRF=67;SRP=148.499;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:84:30,54:30:1162:54:2056:-159.985,0,-79.5925 0/1:72:19,53:19:731:53:2051:-163.148,0,-44.4468 0/1:48:13,33:13:506:33:1261:-99.6398,0,-31.7388 0/1:24:5,19:5:191:19:728:-58.6253,0,-10.3334 dDocent_Contig_91 107 . N A 416.743 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=13;CIGAR=1X;DP=13;DPB=13;DPRA=0;EPP=31.2394;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=6.77626e-21;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=445;QR=0;RO=0;RPL=0;RPP=31.2394;RPPR=0;RPR=13;RUN=1;SAF=0;SAP=31.2394;SAR=13;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:9:0,9:0:0:9:306:-27.8705,-2.70927,0 1/1:2:0,2:0:0:2:70:-6.6474,-0.60206,0 1/1:2:0,2:0:0:2:69:-6.55266,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_92 32 . T C 1571.96 . AB=0.280702;ABP=98.2503;AC=3;AF=0.375;AN=8;AO=73;CIGAR=1X;DP=346;DPB=346;DPRA=0;EPP=161.528;EPPR=595.822;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=0.996337;PAO=0;PQA=0;PQR=0;PRO=0;QA=2906;QR=10960;RO=273;RPL=0;RPP=161.528;RPPR=595.822;RPR=73;RUN=1;SAF=73;SAP=161.528;SAR=0;SRF=273;SRP=595.822;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:93:63,30:63:2545:30:1169:-77.482,0,-201.179 0/0:118:109,9:109:4367:9:363:0,-2.48836,-359.927 0/1:71:48,23:48:1922:23:926:-62.2707,0,-151.803 0/1:64:53,11:53:2126:11:448:-21.4101,0,-172.249 dDocent_Contig_93 11 . C T 117.034 . AB=0.130435;ABP=84.8654;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X;DP=198;DPB=198;DPRA=1.60465;EPP=22.5536;EPPR=411.247;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=367;QR=7347;RO=188;RPL=0;RPP=22.5536;RPPR=411.247;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=188;SRP=411.247;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:69:60,9:60:2308:9:367:-12.6242,0,-187.122 0/0:60:59,0:59:2322:0:0:0,-17.7608,-209.03 0/0:47:47,0:47:1842:0:0:0,-14.1484,-166.002 0/0:22:22,0:22:875:0:0:0,-6.62266,-79.0623 dDocent_Contig_94 114 . T A 1269.01 . AB=0.315534;ABP=63.8959;AC=4;AF=0.5;AN=8;AO=65;CIGAR=1X;DP=206;DPB=206;DPRA=0;EPP=144.156;EPPR=309.188;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=0.992908;PAO=0;PQA=0;PQR=0;PRO=0;QA=2146;QR=4758;RO=141;RPL=0;RPP=144.156;RPPR=309.188;RPR=65;RUN=1;SAF=0;SAP=144.156;SAR=65;SRF=0;SRP=309.188;SRR=141;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:64:46,18:46:1542:18:608:-35.7737,0,-119.799 0/1:56:34,22:34:1186:22:716:-47.8883,0,-90.1901 0/1:58:42,16:42:1393:16:518:-29.4681,0,-108.196 0/1:28:19,9:19:637:9:304:-19.2601,0,-49.2165 dDocent_Contig_95 42 . T C 113.466 . AB=0.155556;ABP=49.3833;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=116;DPB=116;DPRA=1.90141;EPP=18.2106;EPPR=239.701;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=286;QR=4374;RO=109;RPL=0;RPP=18.2106;RPPR=239.701;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=109;SRP=239.701;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:28:28,0:28:1114:0:0:0,-8.42884,-100.539 0/0:33:33,0:33:1317:0:0:0,-9.93399,-118.79 0/1:45:38,7:38:1544:7:286:-12.5685,0,-125.647 0/0:10:10,0:10:399:0:0:0,-3.0103,-36.269 dDocent_Contig_96 58 . A C 700.719 . AB=0.310345;ABP=30.1911;AC=1;AF=0.125;AN=8;AO=36;CIGAR=1X;DP=306;DPB=306;DPRA=2.75758;EPP=81.1833;EPPR=589.308;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1440;QR=10711;RO=270;RPL=36;RPP=81.1833;RPPR=589.308;RPR=0;RUN=1;SAF=36;SAP=81.1833;SAR=0;SRF=270;SRP=589.308;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:115:111,4:111:4388:4:159:0,-19.9265,-380.169 0/1:87:60,27:60:2401:27:1080:-71.2937,0,-190.04 0/0:71:66,5:66:2617:5:201:0,-2.90261,-217.187 0/0:33:33,0:33:1305:0:0:0,-9.93399,-117.714 dDocent_Contig_97 26 . C G 409.546 . AB=0.169811;ABP=153.579;AC=4;AF=0.5;AN=8;AO=27;CIGAR=1X;DP=159;DPB=159;DPRA=0;EPP=61.6401;EPPR=289.645;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1032;QR=5281;RO=132;RPL=0;RPP=61.6401;RPPR=289.645;RPR=27;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=132;SRP=289.645;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:44:39,5:39:1537:5:180:-3.2996,0,-125.319 0/1:42:35,7:35:1420:7:280:-12.9272,0,-115.404 0/1:41:31,10:31:1226:10:374:-21.6521,0,-98.2723 0/1:32:27,5:27:1098:5:198:-8.5633,0,-89.4678 dDocent_Contig_98 40 . T C 47.2397 . AB=0.104478;ABP=94.0501;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=150;DPB=150;DPRA=2.48837;EPP=20.3821;EPPR=311.359;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=327;QR=5679;RO=142;RPL=0;RPP=20.3821;RPPR=311.359;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=142;SRP=311.359;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:40:39,1:39:1576:1:41:0,-7.94663,-137.975 0/1:67:60,7:60:2370:7:286:-5.94581,0,-193.28 0/0:20:20,0:20:801:0:0:0,-6.0206,-72.4067 0/0:23:23,0:23:932:0:0:0,-6.92369,-84.1816 dDocent_Contig_99 107 . N A 70.0096 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.586;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=75;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:75:-6.99933,-0.90309,0 dDocent_Contig_100 11 . C T 1442.21 . AB=0.618421;ABP=12.2676;AC=4;AF=0.5;AN=8;AO=47;CIGAR=1X;DP=76;DPB=76;DPRA=0;EPP=105.07;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1902;QR=1160;RO=29;RPL=0;RPP=105.07;RPPR=65.983;RPR=47;RUN=1;SAF=47;SAP=105.07;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:32:6,26:6:245:26:1051:-85.2446,0,-12.7965 0/1:9:6,3:6:237:3:122:-8.66322,0,-18.9911 0/1:16:8,8:8:321:8:327:-24.9836,0,-24.4411 0/1:19:9,10:9:357:10:402:-30.8188,0,-26.7712 dDocent_Contig_101 92 . A G 567.22 . AB=0.19457;ABP=182.083;AC=4;AF=0.5;AN=8;AO=43;CIGAR=1X;DP=221;DPB=221;DPRA=0;EPP=96.3836;EPPR=387.361;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1412;QR=6038;RO=177;RPL=43;RPP=96.3836;RPPR=387.361;RPR=0;RUN=1;SAF=43;SAP=96.3836;SAR=0;SRF=177;SRP=387.361;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:51:45,6:45:1531:6:206:-3.52415,0,-122.727 0/1:93:74,19:74:2523:19:636:-29.5603,0,-199.334 0/1:57:41,15:41:1397:15:494:-27.5664,0,-108.819 0/1:20:17,3:17:587:3:76:-1.07044,0,-47.1355 dDocent_Contig_102 25 . C G 196.05 . AB=0.275862;ABP=15.6647;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=53;DPB=53;DPRA=3.625;EPP=20.3821;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=321;QR=1811;RO=45;RPL=0;RPP=20.3821;RPPR=100.727;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:21,8:21:855:8:321:-20.5257,0,-68.5299 0/0:12:12,0:12:475:0:0:0,-3.61236,-43.0942 0/0:6:6,0:6:239:0:0:0,-1.80618,-21.8824 0/0:6:6,0:6:242:0:0:0,-1.80618,-22.1573 dDocent_Contig_103 98 . N T 254.722 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=8;CIGAR=1X;DP=8;DPB=8;DPRA=0;EPP=20.3821;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=267;QR=0;RO=0;RPL=8;RPP=20.3821;RPPR=0;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1:0,1:0:0:1:32:-3.19931,-0.30103,0 1/1:2:0,2:0:0:2:60:-5.69857,-0.60206,0 1/1:5:0,5:0:0:5:175:-16.0937,-1.50515,0 ./.:.:.:.:.:.:.:. dDocent_Contig_104 21 . G A 5409.12 . AB=0.597973;ABP=27.6888;AC=4;AF=0.5;AN=8;AO=177;CIGAR=1X4M;DP=296;DPB=296;DPRA=0;EPP=387.361;EPPR=220.158;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.98;PAO=0;PQA=0;PQR=0;PRO=0;QA=7001;QR=3834;RO=100;RPL=0;RPP=387.361;RPPR=220.158;RPR=177;RUN=1;SAF=177;SAP=387.361;SAR=0;SRF=100;SRP=220.158;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:60:16,1,43:16:605:1,43:40,1696:-134.708,-136.23,-185.514,0,-46.2725,-36.6246 0|1:98:38,8,51:38:1449:8,51:317,2019:-154.708,-140.055,-256.501,0,-92.7523,-103.495 0|1:114:36,9,69:36:1399:9,69:359,2723:-213.196,-194.467,-306.711,0,-85.3796,-94.1769 0|1:24:10,0,14:10:381:0,14:0,563:-43.7878,-46.7981,-78.0413,0,-31.6326,-27.4182 dDocent_Contig_105 20 . A T 377.361 . AB=0.202247;ABP=71.5459;AC=2;AF=0.25;AN=8;AO=18;CIGAR=1X;DP=173;DPB=173;DPRA=1.05952;EPP=42.0968;EPPR=339.589;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=736;QR=6208;RO=155;RPL=0;RPP=42.0968;RPPR=339.589;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=155;SRP=339.589;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:49:49,0:49:1963:0:0:0,-14.7505,-176.866 0/1:59:45,14:45:1805:14:572:-34.0608,0,-144.901 0/0:35:35,0:35:1394:0:0:0,-10.536,-125.721 0/1:30:26,4:26:1046:4:164:-6.119,0,-85.4003 dDocent_Contig_107 63 . G C 137.545 . AB=0.142857;ABP=103.829;AC=1;AF=0.125;AN=8;AO=25;CIGAR=1X;DP=319;DPB=319;DPRA=1.83673;EPP=57.2971;EPPR=639.252;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=942;QR=11403;RO=293;RPL=25;RPP=57.2971;RPPR=639.252;RPR=0;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=293;SRP=639.252;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:91:78,13:78:3032:13:464:-14.6753,0,-245.584 0/0:106:98,8:98:3854:8:323:0,-2.4708,-317.433 0/0:73:68,4:68:2617:4:155:0,-7.75588,-221.352 0/0:49:49,0:49:1900:0:0:0,-14.7505,-171.205 dDocent_Contig_108 98 . G A 172.719 . AB=0.0996016;ABP=1750.61;AC=1;AF=0.125;AN=8;AO=347;CIGAR=1X;DP=3884;DPB=3884;DPRA=0;EPP=647.825;EPPR=7390.56;GTI=0;LEN=1;MEANALT=2.5;MQM=59.0432;MQMR=59.938;NS=4;NUMALT=1;ODDS=0;PAIRED=0.806916;PAIREDR=0.839732;PAO=0;PQA=0;PQR=0;PRO=0;QA=11847;QR=115871;RO=3438;RPL=8;RPP=688.626;RPPR=6657.97;RPR=339;RUN=1;SAF=21;SAP=585.146;SAR=326;SRF=87;SRP=6731.98;SRR=3351;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:1123:988,104:988:33274:104:3590:0,-6.58002,-2671.39 0/0:981:893,74:893:30074:74:2494:0,-68.3832,-2482.69 0/1:1255:1089,125:1089:36717:125:4281:-18.4937,0,-2936.81 0/0:525:468,44:468:15806:44:1482:0,-20.7555,-1288.72 dDocent_Contig_110 18 . C A 1219.01 . AB=0.12782;ABP=963.128;AC=3;AF=0.375;AN=8;AO=123;CIGAR=1X;DP=1167;DPB=1167;DPRA=0;EPP=270.101;EPPR=2261.34;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.993269;PAO=0;PQA=0;PQR=0;PRO=0;QA=4875;QR=40589;RO=1040;RPL=0;RPP=270.101;RPPR=2261.34;RPR=123;RUN=1;SAF=123;SAP=270.101;SAR=0;SRF=1040;SRP=2261.34;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:327:289,37:289:11352:37:1462:-33.3017,0,-922.465 0/0:369:347,21:347:13430:21:818:0,-37.1457,-1133.97 0/1:299:260,37:260:10214:37:1476:-43.3442,0,-828.926 0/1:172:144,28:144:5593:28:1119:-49.2213,0,-451.465 dDocent_Contig_111 10 . T C 1712.64 . AB=0.483607;ABP=3.29508;AC=4;AF=0.5;AN=8;AO=59;CIGAR=1X;DP=122;DPB=122;DPRA=0;EPP=131.127;EPPR=139.813;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.983051;PAIREDR=0.952381;PAO=0;PQA=0;PQR=0;PRO=0;QA=2357;QR=2533;RO=63;RPL=0;RPP=131.127;RPPR=139.813;RPR=59;RUN=1;SAF=59;SAP=131.127;SAR=0;SRF=63;SRP=139.813;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:19,12:19:761:12:480:-34.2198,0,-59.4776 0/1:19:12,7:12:484:7:282:-20.033,0,-38.192 0/1:41:18,23:18:727:23:934:-72.0197,0,-53.4131 0/1:31:14,17:14:561:17:661:-50.4809,0,-41.4979 dDocent_Contig_112 38 . G A 3824.48 . AB=0.0921053;ABP=112.841;AC=4;AF=0.5;AN=8;AO=7;CIGAR=1X4M;DP=245;DPB=245;DPRA=0;EPP=18.2106;EPPR=226.672;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=281;QR=3960;RO=103;RPL=0;RPP=18.2106;RPPR=226.672;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=103;SRP=226.672;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:88:49,0,6,33,0:49:1882:0,6,33,0:0,236,1322,0:-94.1636,-108.914,-263.385,-89.5019,-243.971,-242.165,0,-154.471,-135.057,-144.537,-108.914,-263.385,-243.971,-154.471,-263.385 0|1:76:11,0,0,58,7:11:424:0,0,58,7:0,0,2320,281:-187.79,-191.102,-225.914,-191.102,-225.914,-225.914,0,-34.8043,-34.8043,-17.3446,-167.948,-202.76,-202.76,-11.6444,-200.652 0|1:47:31,0,0,16,0:31:1196:0,0,16,0:0,0,636,0:-43.4272,-52.7591,-150.968,-52.7591,-150.968,-150.968,0,-98.6018,-98.6018,-93.7854,-52.7591,-150.968,-150.968,-98.6018,-150.968 0|1:34:12,2,0,20,0:12:458:2,0,20,0:80,0,803,0:-62.5566,-59.579,-96.5449,-66.169,-97.147,-103.738,0,-30.9671,-37.5598,-31.5392,-66.169,-97.147,-103.738,-37.5598,-103.738 dDocent_Contig_113 21 . A C 129.265 . AB=0.230769;ABP=19.3799;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X;DP=177;DPB=177;DPRA=0.735294;EPP=22.5536;EPPR=367.818;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.9583;NS=4;NUMALT=1;ODDS=0;PAIRED=0.777778;PAIREDR=0.636905;PAO=0;PQA=0;PQR=0;PRO=0;QA=359;QR=6680;RO=168;RPL=0;RPP=22.5536;RPPR=367.818;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=168;SRP=367.818;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:49:46,3:46:1832:3:119:0,-3.65529,-153.995 0/0:57:57,0:57:2273:0:0:0,-17.1587,-204.715 0/0:45:45,0:45:1776:0:0:0,-13.5463,-160.056 0/1:26:20,6:20:799:6:240:-14.1484,0,-64.4018 dDocent_Contig_115 98 . N C 408.992 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=13;CIGAR=1X;DP=13;DPB=13;DPRA=0;EPP=31.2394;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=438;QR=0;RO=0;RPL=13;RPP=31.2394;RPPR=0;RPR=0;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:4:0,4:0:0:4:140:-12.9449,-1.20412,0 1/1:3:0,3:0:0:3:101:-9.4236,-0.90309,0 ./.:.:.:.:.:.:.:. 1/1:6:0,6:0:0:6:197:-18.0527,-1.80618,0 dDocent_Contig_116 20 . C T 2340.68 . AB=0.684685;ABP=35.8954;AC=4;AF=0.5;AN=8;AO=76;CIGAR=1X;DP=111;DPB=111;DPRA=0;EPP=168.042;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3019;QR=1405;RO=35;RPL=0;RPP=168.042;RPPR=79.0118;RPR=76;RUN=1;SAF=76;SAP=168.042;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:50:8,42:8:325:42:1671:-135.557,0,-14.5679 0/1:42:16,26:16:642:26:1039:-81.1592,0,-45.4713 0/1:7:5,2:5:196:2:80:-5.48436,0,-15.9064 0/1:12:6,6:6:242:6:229:-17.3571,0,-18.545 dDocent_Contig_117 51 . G A 5403.92 . AB=0.780822;ABP=153.02;AC=4;AF=0.5;AN=8;AO=171;CIGAR=1X;DP=219;DPB=219;DPRA=0;EPP=374.332;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6788;QR=1902;RO=48;RPL=171;RPP=374.332;RPPR=107.241;RPR=0;RUN=1;SAF=171;SAP=374.332;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:69:14,55:14:565:55:2181:-175.695,0,-30.4222 0/1:74:12,62:12:468:62:2464:-199.623,0,-20.1924 0/1:46:8,38:8:310:38:1514:-122.652,0,-14.4144 0/1:30:14,16:14:559:16:629:-47.9108,0,-41.621 dDocent_Contig_118 62 . C T 295.087 . AB=0.184783;ABP=82.4107;AC=2;AF=0.25;AN=8;AO=20;CIGAR=1X;DP=133;DPB=133;DPRA=0;EPP=46.4397;EPPR=248.387;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=772;QR=4219;RO=113;RPL=20;RPP=46.4397;RPPR=248.387;RPR=0;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=113;SRP=248.387;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:56:44,12:44:1620:12:472:-25.9686,0,-129.182 0/1:36:31,5:31:1180:5:183:-5.98135,0,-95.6475 0/0:28:26,2:26:984:2:80:0,-0.837049,-81.2686 0/0:13:12,1:12:435:1:37:0,-0.215561,-35.7855 dDocent_Contig_119 129 . C T 124.891 . AB=0.28;ABP=13.5202;AC=2;AF=0.25;AN=8;AO=7;CIGAR=1X;DP=73;DPB=73;DPRA=0.520833;EPP=18.2106;EPPR=137.773;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.969697;PAO=0;PQA=0;PQR=0;PRO=0;QA=242;QR=2333;RO=66;RPL=0;RPP=18.2106;RPPR=146.327;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=1;SRP=137.773;SRR=65;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:36:36,0:36:1273:0:0:0,-10.8371,-114.874 0/1:17:13,4:13:457:4:143:-8.10394,0,-36.3465 0/0:12:12,0:12:423:0:0:0,-3.61236,-38.4038 0/1:8:5,3:5:180:3:99:-6.82881,0,-14.1438 dDocent_Contig_120 30 . C T 635.957 . AB=0.166667;ABP=211.472;AC=2;AF=0.25;AN=8;AO=54;CIGAR=1X;DP=468;DPB=468;DPRA=0;EPP=120.27;EPPR=902;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.874396;PAO=0;PQA=0;PQR=0;PRO=0;QA=2180;QR=16520;RO=414;RPL=0;RPP=120.27;RPPR=902;RPR=54;RUN=1;SAF=54;SAP=120.27;SAR=0;SRF=414;SRP=902;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:113:106,7:106:4269:7:283:0,-8.17301,-358.304 0/1:148:121,27:121:4848:27:1085:-53.385,0,-391.654 0/0:139:128,11:128:5077:11:448:0,-1.16719,-416.129 0/1:68:59,9:59:2326:9:364:-12.6541,0,-189.026 dDocent_Contig_121 22 . T C 5386.84 . AB=0.779006;ABP=125.393;AC=5;AF=0.625;AN=8;AO=165;CIGAR=1X;DP=205;DPB=205;DPRA=0;EPP=361.303;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=0.981818;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6625;QR=1595;RO=40;RPL=0;RPP=361.303;RPPR=89.8692;RPR=165;RUN=1;SAF=165;SAP=361.303;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:56:8,48:8:305:48:1910:-155.239,0,-10.9442 0/1:62:14,48:14:568:48:1949:-156.932,0,-32.7981 0/1:63:18,45:18:722:45:1794:-142.702,0,-46.3376 1/1:24:0,24:0:0:24:972:-87.7773,-7.22472,0 dDocent_Contig_123 98 . N G 948.067 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=31;CIGAR=1X;DP=31;DPB=31;DPRA=0;EPP=70.3259;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=24.9941;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1050;QR=0;RO=0;RPL=31;RPP=70.3259;RPPR=0;RPR=0;RUN=1;SAF=31;SAP=70.3259;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:31:0,31:0:0:31:1050:-94.8067,-9.33193,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_125 9 . T G 1272.91 . AB=0.119777;ABP=453.812;AC=4;AF=0.5;AN=8;AO=43;CIGAR=1X4M;DP=359;DPB=359;DPRA=0;EPP=96.3836;EPPR=584.965;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1651;QR=10565;RO=268;RPL=0;RPP=96.3836;RPPR=584.965;RPR=43;RUN=1;SAF=43;SAP=96.3836;SAR=0;SRF=268;SRP=584.965;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:125:80,13,32:80:3161:13,32:495,1225:-76.4486,-59.9315,-316.15,0,-219.538,-250.503 0|1:102:85,11,6:85:3347:11,6:434,231:-10.1291,0,-272.042,-16.7528,-256.387,-290.291 0|1:86:66,18,2:66:2589:18,2:704,78:-38.0159,0,-207.495,-51.4722,-206.502,-263.782 0|1:46:37,6,3:37:1468:6,3:235,117:-8.1873,0,-119.047,-9.70832,-111.236,-129.657 dDocent_Contig_126 133 . A G 153.762 . AB=0.388889;ABP=4.9405;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=179;DPB=179;DPRA=0.335404;EPP=18.2106;EPPR=376.504;GTI=0;LEN=1;MEANALT=1;MQM=56.5714;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=241;QR=5756;RO=172;RPL=0;RPP=18.2106;RPPR=376.504;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=376.504;SRR=172;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:56:56,0:56:1911:0:0:0,-16.8577,-172.271 0/1:18:11,7:11:366:7:241:-16.5981,0,-27.8427 0/0:71:71,0:71:2329:0:0:0,-21.3731,-209.867 0/0:34:34,0:34:1150:0:0:0,-10.235,-103.803 dDocent_Contig_128 1 . N G 1253.7 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=34;CIGAR=1X;DP=34;DPB=34;DPRA=0;EPP=76.8404;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1370;QR=0;RO=0;RPL=0;RPP=76.8404;RPPR=0;RPR=34;RUN=1;SAF=34;SAP=76.8404;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:7:0,7:0:0:7:282:-25.753,-2.10721,0 1/1:5:0,5:0:0:5:204:-18.744,-1.50515,0 1/1:20:0,20:0:0:20:803:-72.5838,-6.0206,0 1/1:2:0,2:0:0:2:81:-7.68573,-0.60206,0 dDocent_Contig_130 129 . A C 1038.37 . AB=0.386555;ABP=16.3128;AC=3;AF=0.375;AN=8;AO=48;CIGAR=1X;DP=148;DPB=148;DPRA=0;EPP=107.241;EPPR=220.158;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1654;QR=3767;RO=100;RPL=0;RPP=107.241;RPPR=220.158;RPR=48;RUN=1;SAF=0;SAP=107.241;SAR=48;SRF=0;SRP=220.158;SRR=100;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:46:25,21:25:957:21:731:-52.2657,0,-72.5905 0/1:29:13,16:13:495:16:550:-41.0956,0,-36.1654 0/1:44:35,9:35:1300:9:304:-14.4428,0,-104.034 0/0:29:27,2:27:1015:2:69:0,-2.17721,-85.0971 dDocent_Contig_131 16 . T C 791.348 . AB=0.222222;ABP=111.584;AC=2;AF=0.25;AN=8;AO=38;CIGAR=1X;DP=285;DPB=285;DPRA=0.884615;EPP=85.5263;EPPR=505.183;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.910931;PAO=0;PQA=0;PQR=0;PRO=0;QA=1523;QR=8722;RO=247;RPL=0;RPP=85.5263;RPPR=539.364;RPR=38;RUN=1;SAF=38;SAP=85.5263;SAR=0;SRF=243;SRP=505.183;SRR=4;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:142:109,33:109:3892:33:1319:-76.2266,0,-307.677 0/0:78:78,0:78:2740:0:0:0,-23.4803,-246.814 0/0:45:43,2:43:1471:2:82:0,-5.76667,-124.884 0/1:20:17,3:17:619:3:122:-5.35189,0,-50.016 dDocent_Contig_132 59 . C T 135.324 . AB=0.171875;ABP=62.8615;AC=2;AF=0.25;AN=8;AO=14;CIGAR=1X;DP=238;DPB=238;DPRA=0;EPP=33.4109;EPPR=489.42;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=498;QR=8559;RO=224;RPL=14;RPP=33.4109;RPPR=489.42;RPR=0;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=224;SRP=489.42;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:66:64,2:64:2454:2:78:0,-12.4645,-213.658 0/0:108:107,1:107:4062:1:37:0,-28.8134,-361.958 0/1:45:36,9:36:1393:9:305:-14.223,0,-112.102 0/1:19:17,2:17:650:2:78:-1.6839,0,-53.1139 dDocent_Contig_135 128 . G A 85.0515 . AB=0.140845;ABP=82.5596;AC=3;AF=0.375;AN=8;AO=15;CIGAR=1X;DP=142;DPB=142;DPRA=0;EPP=35.5824;EPPR=276.616;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=542;QR=4352;RO=126;RPL=0;RPP=35.5824;RPPR=276.616;RPR=15;RUN=1;SAF=0;SAP=35.5824;SAR=15;SRF=0;SRP=276.616;SRR=126;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:71:66,5:66:2280:5:180:0,-4.82123,-188.915 0/1:18:14,3:14:476:3:108:-4.81512,0,-37.9579 0/1:38:34,4:34:1174:4:145:-1.96648,0,-94.5244 0/1:15:12,3:12:422:3:109:-5.65264,0,-33.7999 dDocent_Contig_136 37 . T A 76.7917 . AB=0.147059;ABP=39.7976;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=91;DPB=91;DPRA=1.78947;EPP=13.8677;EPPR=189.757;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=205;QR=3442;RO=86;RPL=0;RPP=13.8677;RPPR=189.757;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=86;SRP=189.757;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:34:29,5:29:1171:5:205:-8.59999,0,-95.4303 0/0:26:26,0:26:1022:0:0:0,-7.82678,-92.2719 0/0:20:20,0:20:803:0:0:0,-6.0206,-72.5866 0/0:11:11,0:11:446:0:0:0,-3.31133,-40.4945 dDocent_Contig_137 9 . T G 3980.04 . AB=0.0623557;ABP=723.362;AC=0;AF=0;AN=8;AO=27;CIGAR=1X3M1X1M;DP=682;DPB=682;DPRA=0;EPP=61.6401;EPPR=1047.49;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=59.8981;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.910603;PAO=0;PQA=0;PQR=0;PRO=0;QA=1044;QR=18876;RO=481;RPL=0;RPP=61.6401;RPPR=1047.49;RPR=27;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=481;SRP=1047.49;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:228:157,20,51:157:6164:20,51:774,1949:-112.64,-96.3219,-597.269,0,-443.387,-491.612 0|0:205:143,7,54:143:5636:7,54:270,2072:-127.017,-147.892,-609.484,0,-441.527,-447.443 0|0:139:94,0,45:94:3683:0,45:0,1748:-115.545,-143.842,-446.691,0,-303.238,-289.692 0|0:110:87,0,23:87:3393:0,23:0,901:-48.2911,-74.4807,-350.763,0,-276.673,-269.749 dDocent_Contig_138 145 . A G 609.588 . AB=0.122727;ABP=274.997;AC=2;AF=0.25;AN=8;AO=35;CIGAR=11M1X;DP=377;DPB=387.667;DPRA=0;EPP=79.0118;EPPR=606.68;GTI=0;LEN=1;MEANALT=5.25;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1407;QR=9986;RO=278;RPL=0;RPP=79.0118;RPPR=606.68;RPR=35;RUN=1;SAF=0;SAP=79.0118;SAR=35;SRF=0;SRP=606.68;SRR=278;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:157:130,8,10,8:130:4674:8,10,8:269,268,317:0,-17.3338,-396.272,-18.0606,-377.582,-396.364,-13.0108,-372.586,-373.281,-391.971 0|1:123:82,1,11,18:82:2971:1,11,18:35,344,729:-35.4835,-57.3198,-299.602,-32.534,-272.266,-271.802,0,-239.783,-214.993,-237.212 0|0:54:30,7,12,3:30:1073:7,12,3:214,370,123:-20.6478,-12.5314,-97.9412,0,-70.3799,-83.9086,-19.5121,-89.8914,-77.3637,-106.133 0|1:43:36,0,0,6:36:1268:0,0,6:0,0,238:-8.79403,-19.6311,-122.828,-19.6311,-122.828,-122.828,0,-103.231,-103.231,-101.425 dDocent_Contig_139 27 . T C 64.4458 . AB=0.151515;ABP=37.8197;AC=2;AF=0.25;AN=8;AO=6;CIGAR=1X;DP=84;DPB=84;DPRA=0.884058;EPP=16.0391;EPPR=172.385;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=241;QR=3135;RO=78;RPL=0;RPP=16.0391;RPPR=172.385;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=78;SRP=172.385;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:23:23,0:23:919:0:0:0,-6.92369,-83.0155 0/0:28:27,1:27:1091:1:41:0,-4.33427,-94.3802 0/1:26:22,4:22:882:4:159:-6.86517,0,-71.8627 0/1:7:6,1:6:243:1:41:-1.98736,0,-20.1408 dDocent_Contig_140 71 . A T 22597.7 . AB=0.596935;ABP=109.519;AC=4;AF=0.5;AN=8;AO=779;CIGAR=1X;DP=1305;DPB=1305;DPRA=0;EPP=1694.59;EPPR=1145.2;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=29541;QR=19670;RO=526;RPL=779;RPP=1694.59;RPPR=1145.2;RPR=0;RUN=1;SAF=779;SAP=1694.59;SAR=0;SRF=526;SRP=1145.2;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:487:213,274:213:8043:274:10288:-778.969,0,-577.088 0/1:358:135,223:135:5089:223:8476:-654.85,0,-350.274 0/1:298:115,183:115:4251:183:6999:-540.075,0,-292.978 0/1:162:63,99:63:2287:99:3778:-291.369,0,-157.316 dDocent_Contig_141 18 . A T 408.991 . AB=0.208333;ABP=73.9451;AC=4;AF=0.5;AN=8;AO=20;CIGAR=1X;DP=96;DPB=96;DPRA=0;EPP=46.4397;EPPR=168.042;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.95;PAIREDR=0.868421;PAO=0;PQA=0;PQR=0;PRO=0;QA=811;QR=3024;RO=76;RPL=0;RPP=46.4397;RPPR=168.042;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=76;SRP=168.042;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:18,11:18:715:11:449:-32.036,0,-55.945 0/1:34:31,3:31:1218:3:118:-0.766562,0,-99.6518 0/1:18:15,3:15:607:3:121:-5.86166,0,-49.5501 0/1:15:12,3:12:484:3:123:-6.94934,0,-39.3958 dDocent_Contig_142 131 . A C 284.485 . AB=0.25;ABP=39.9253;AC=3;AF=0.375;AN=8;AO=17;CIGAR=1X;DP=83;DPB=83;DPRA=1.51111;EPP=39.9253;EPPR=146.327;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=565;QR=2266;RO=66;RPL=0;RPP=39.9253;RPPR=146.327;RPR=17;RUN=1;SAF=0;SAP=39.9253;SAR=17;SRF=0;SRP=146.327;SRR=66;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:45:34,11:34:1161:11:367:-19.8048,0,-91.2475 0/1:10:9,1:9:309:1:35:-0.488329,0,-25.1332 0/0:15:15,0:15:516:0:0:0,-4.51545,-46.7671 0/1:13:8,5:8:280:5:163:-11.0775,0,-21.6266 dDocent_Contig_143 11 . A G 1876.35 . AB=0.462069;ABP=4.82236;AC=4;AF=0.5;AN=8;AO=67;CIGAR=1X;DP=145;DPB=145;DPRA=0;EPP=148.499;EPPR=172.385;GTI=0;LEN=1;MEANALT=1;MQM=53.7463;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.897436;PAO=0;PQA=0;PQR=0;PRO=0;QA=2668;QR=3109;RO=78;RPL=0;RPP=148.499;RPPR=172.385;RPR=67;RUN=1;SAF=67;SAP=148.499;SAR=0;SRF=78;SRP=172.385;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:47:26,21:26:1055:21:845:-62.2119,0,-81.09 0/1:49:24,25:24:942:25:978:-69.863,0,-70.3336 0/1:25:14,11:14:548:11:447:-32.3644,0,-42.1296 0/1:24:14,10:14:564:10:398:-28.6853,0,-43.8779 dDocent_Contig_145 128 . C T 427.923 . AB=0.64;ABP=7.26639;AC=1;AF=0.125;AN=8;AO=26;CIGAR=1X;DP=287;DPB=287;DPRA=1.89147;EPP=59.4686;EPPR=569.765;GTI=0;LEN=1;MEANALT=1;MQM=59.6538;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=905;QR=9311;RO=261;RPL=0;RPP=59.4686;RPPR=569.765;RPR=26;RUN=1;SAF=0;SAP=59.4686;SAR=26;SRF=0;SRP=569.765;SRR=261;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:114:111,3:111:3948:3:110:0,-24.0564,-345.234 0/0:105:98,7:98:3502:7:226:0,-10.956,-294.72 0/0:43:43,0:43:1556:0:0:0,-12.9443,-140.327 0/1:25:9,16:9:305:16:569:-44.0141,0,-20.25 dDocent_Contig_146 31 . T C 371.665 . AB=0.186441;ABP=103.781;AC=1;AF=0.125;AN=8;AO=29;CIGAR=1X;DP=440;DPB=440;DPRA=1.51429;EPP=65.983;EPPR=895.485;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1101;QR=16462;RO=411;RPL=0;RPP=65.983;RPPR=895.485;RPR=29;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=411;SRP=895.485;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:108:108,0:108:4338:0:0:0,-32.5112,-390.354 0/1:118:96,22:96:3853:22:818:-38.3884,0,-311.243 0/0:147:140,7:140:5575:7:283:0,-18.408,-475.719 0/0:67:67,0:67:2696:0:0:0,-20.169,-242.753 dDocent_Contig_147 11 . A T 582.359 . AB=0.319444;ABP=23.398;AC=4;AF=0.5;AN=8;AO=23;CIGAR=1X;DP=72;DPB=72;DPRA=0;EPP=52.9542;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=932;QR=1962;RO=49;RPL=0;RPP=52.9542;RPPR=109.412;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:7,7:7:284:7:282:-21.5371,0,-21.7196 0/1:25:22,3:22:876:3:123:-3.93904,0,-71.6216 0/1:23:14,9:14:561:9:364:-26.2007,0,-43.9082 0/1:10:6,4:6:241:4:163:-12.0481,0,-19.056 dDocent_Contig_148 8 . T A 2717.27 . 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N A 97.0472 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.586;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=104;QR=0;RO=0;RPL=3;RPP=9.52472;RPPR=0;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:104:-9.70309,-0.90309,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_150 44 . A G 1292.49 . 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AB=0.123288;ABP=272.957;AC=3;AF=0.375;AN=8;AO=34;CIGAR=1X;DP=311;DPB=311;DPRA=0;EPP=76.8404;EPPR=604.508;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.5379;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.823105;PAO=0;PQA=0;PQR=0;PRO=0;QA=1362;QR=11050;RO=277;RPL=0;RPP=76.8404;RPPR=604.508;RPR=34;RUN=1;SAF=34;SAP=76.8404;SAR=0;SRF=277;SRP=604.508;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:97:84,13:84:3349:13:525:-18.3955,0,-272.055 0/1:82:72,10:72:2840:10:398:-11.4925,0,-230.908 0/0:92:85,7:85:3413:7:286:0,-1.57994,-281.005 0/1:40:36,4:36:1448:4:153:-2.09851,0,-118.508 dDocent_Contig_152 56 . G A 2253.97 . AB=0.452128;ABP=6.75262;AC=4;AF=0.5;AN=8;AO=85;CIGAR=1X;DP=188;DPB=188;DPRA=0;EPP=187.585;EPPR=226.672;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3180;QR=3910;RO=103;RPL=85;RPP=187.585;RPPR=226.672;RPR=0;RUN=1;SAF=85;SAP=187.585;SAR=0;SRF=103;SRP=226.672;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:58:48,10:48:1836:10:373:-16.4568,0,-148.03 0/1:84:26,58:26:992:58:2167:-169.97,0,-64.3053 0/1:21:14,7:14:532:7:257:-17.1594,0,-41.9014 0/1:25:15,10:15:550:10:383:-27.3002,0,-42.3054 dDocent_Contig_153 83 . T G 10652.3 . 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AB=0.599581;ABP=44.0953;AC=4;AF=0.5;AN=8;AO=286;CIGAR=1X;DP=477;DPB=477;DPRA=0;EPP=624.051;EPPR=417.762;GTI=0;LEN=1;MEANALT=1;MQM=59.979;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=11511;QR=7686;RO=191;RPL=0;RPP=624.051;RPPR=417.762;RPR=286;RUN=1;SAF=286;SAP=624.051;SAR=0;SRF=191;SRP=417.762;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:136:60,76:60:2421:76:3065:-234.978,0,-177.092 0/1:121:66,55:66:2644:55:2205:-162.186,0,-201.646 0/1:112:38,74:38:1537:74:2983:-234.822,0,-104.851 0/1:108:27,81:27:1084:81:3258:-260.761,0,-65.3346 dDocent_Contig_157 108 . A G 366.488 . AB=0.0952381;ABP=62.7775;AC=0;AF=0;AN=8;AO=4;CIGAR=1X2M1X3M;DP=118;DPB=118;DPRA=1.71429;EPP=11.6962;EPPR=189.757;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=129;QR=2698;RO=86;RPL=0;RPP=11.6962;RPPR=189.757;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=189.757;SRR=86;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:17:15,0,1,0:15:480:0,1,0:0,35,0:0,-4.51545,-43.2959,-1.51778,-40.4454,-40.1444,-4.51545,-43.2959,-40.4454,-43.2959 0|0:32:30,0,2,0:30:907:0,2,0:0,69,0:0,-9.0309,-81.5728,-3.0803,-75.9644,-75.3623,-9.0309,-81.5728,-75.9644,-81.5728 0|0:42:24,4,13,1:24:771:4,13,1:129,431,35:-27.6427,-24.4668,-85.4043,0,-51.7405,-58.23,-32.0185,-83.76,-59.2946,-93.8616 0|0:27:17,0,6,4:17:540:0,6,4:0,204,123:-11.4497,-16.5672,-60.0318,0,-43.4786,-41.6725,-6.7172,-50.1711,-33.6176,-48.967 dDocent_Contig_158 117 . A G 28327.2 . AB=0.0378323;ABP=1817.49;AC=0;AF=0;AN=8;AO=37;CIGAR=1X1M1X;DP=1308;DPB=1308;DPRA=0;EPP=83.3548;EPPR=569.765;GTI=0;LEN=1;MEANALT=3.33333;MQM=37.027;MQMR=59.7203;NS=4;NUMALT=2;ODDS=1.11022e-16;PAIRED=0.891892;PAIREDR=0.996169;PAO=0;PQA=0;PQR=0;PRO=0;QA=1275;QR=8834;RO=261;RPL=0;RPP=83.3548;RPPR=569.765;RPR=37;RUN=1;SAF=0;SAP=83.3548;SAR=37;SRF=0;SRP=569.765;SRR=261;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:355:37,4,313:37:1289:4,313:115,11226:-891.455,-900.415,-1004.02,0,-102.875,-10.8101 0|0:443:96,32,313:96:3197:32,313:1142,11372:-884.57,-824.546,-1073.63,0,-169.8,-164.505 0|0:330:84,0,246:84:2870:0,246:0,8785:-684.973,-710.259,-942.064,0,-232.148,-158.095 0|0:180:44,1,134:44:1478:1,134:18,4825:-377.215,-389.143,-508.565,0,-118.537,-79.5148 dDocent_Contig_159 1 . N G 108.184 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.586;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=116;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:116:-10.8168,-0.90309,0 dDocent_Contig_160 36 . T G 16542.3 . AB=0.459265;ABP=21.055;AC=4;AF=0.5;AN=8;AO=575;CIGAR=1X;DP=1252;DPB=1252;DPRA=0;EPP=1251.61;EPPR=1468.75;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=5.55112e-17;PAIRED=0.972174;PAIREDR=0.986667;PAO=0;PQA=0;PQR=0;PRO=0;QA=22638;QR=26815;RO=675;RPL=0;RPP=1251.61;RPPR=1468.75;RPR=575;RUN=1;SAF=575;SAP=1251.61;SAR=0;SRF=675;SRP=1468.75;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:392:164,227:164:6486:227:8860:-678.835,0,-465.375 0/1:370:223,146:223:8826:146:5760:-406.757,0,-682.383 0/1:314:190,124:190:7555:124:4923:-348.462,0,-585.067 0/1:176:98,78:98:3948:78:3095:-225.665,0,-302.321 dDocent_Contig_161 107 . N T 193.364 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=6;CIGAR=1X2M1X;DP=6;DPB=6;DPRA=0;EPP=16.0391;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=204;QR=0;RO=0;RPL=0;RPP=16.0391;RPPR=0;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. 1|1:3:0,3:0:0:3:100:-9.33066,-0.90309,0 .:.:.:.:.:.:.:. 1|1:3:0,3:0:0:3:104:-9.70309,-0.90309,0 dDocent_Contig_162 107 . N A 1608.95 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=54;CIGAR=1X;DP=54;DPB=54;DPRA=0;EPP=120.27;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1767;QR=0;RO=0;RPL=0;RPP=120.27;RPPR=0;RPR=54;RUN=1;SAF=0;SAP=120.27;SAR=54;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:9:0,9:0:0:9:310:-28.2343,-2.70927,0 1/1:19:0,19:0:0:19:602:-54.48,-5.71957,0 1/1:16:0,16:0:0:16:539:-48.8311,-4.81648,0 1/1:10:0,10:0:0:10:316:-28.7478,-3.0103,0 dDocent_Contig_163 98 . N T 5403.31 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=171;CIGAR=1X;DP=171;DPB=171;DPRA=0;EPP=374.332;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=5983;QR=0;RO=0;RPL=171;RPP=374.332;RPPR=0;RPR=0;RUN=1;SAF=171;SAP=374.332;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:27:0,27:0:0:27:943:-85.183,-8.12781,0 1/1:91:0,91:0:0:91:3186:-286.962,-27.3937,0 1/1:39:0,39:0:0:39:1372:-123.78,-11.7402,0 1/1:14:0,14:0:0:14:482:-43.707,-4.21442,0 dDocent_Contig_164 185 . C G 305.509 . AB=0.179775;ABP=82.2812;AC=1;AF=0.125;AN=8;AO=16;CIGAR=1X;DP=139;DPB=139;DPRA=5.34;EPP=37.7539;EPPR=270.101;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=647;QR=4906;RO=123;RPL=16;RPP=37.7539;RPPR=270.101;RPR=0;RUN=1;SAF=0;SAP=37.7539;SAR=16;SRF=0;SRP=270.101;SRR=123;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:20:20,0:20:797:0:0:0,-6.0206,-72.0466 0/1:89:73,16:73:2931:16:647:-31.7728,0,-237.087 0/0:20:20,0:20:779:0:0:0,-6.0206,-70.4128 0/0:10:10,0:10:399:0:0:0,-3.0103,-36.2674 dDocent_Contig_165 133 . T G 678.525 . AB=0.206897;ABP=67.9298;AC=0;AF=0;AN=8;AO=18;CIGAR=1X2M1X1M1X1M1X;DP=150;DPB=150;DPRA=0;EPP=42.0968;EPPR=204.957;GTI=0;LEN=1;MEANALT=2.5;MQM=6;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=605;QR=3131;RO=93;RPL=0;RPP=42.0968;RPPR=204.957;RPR=18;RUN=1;SAF=0;SAP=42.0968;SAR=18;SRF=0;SRP=204.957;SRR=93;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:57:23,16,17:23:745:16,17:535,588:-40.514,-43.757,-99.0364,0,-56.5407,-55.131 0|0:12:6,0,5:6:207:0,5:0,174:-12.2984,-14.1046,-30.9239,0,-16.8453,-15.3401 0|0:51:43,0,8:43:1479:0,8:0,260:-8.26879,-21.2131,-141.349,0,-120.463,-118.054 0|0:30:21,2,7:21:700:2,7:70,230:-12.2608,-18.1641,-74.2266,0,-56.4546,-54.8008 dDocent_Contig_166 28 . T C 5482.17 . AB=0.52968;ABP=4.686;AC=4;AF=0.5;AN=8;AO=116;CIGAR=2X6M;DP=219;DPB=219;DPRA=0;EPP=254.901;EPPR=48.6112;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4640;QR=818;RO=21;RPL=0;RPP=254.901;RPPR=48.6112;RPR=116;RUN=1;SAF=116;SAP=254.901;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:48:7,0,24,17:7:265:0,24,17:0,962,663:-109.937,-112.045,-133.764,-32.7851,-54.5033,-47.2786,-57.5538,-79.2704,0,-74.1529 1|0:56:6,0,38,11:6:235:0,38,11:0,1520,411:-137.736,-139.542,-158.866,-14.3123,-33.6446,-22.2055,-105.9,-125.223,0,-121.912 1|0:79:8,0,41,30:8:318:0,41,30:0,1652,1172:-203.911,-206.32,-232.502,-70.1524,-96.3361,-83.9939,-109.983,-136.165,0,-127.134 1|0:36:0,4,13,19:0:0:4,13,19:158,506,737:-102.122,-89.1192,-87.9151,-60.544,-47.5409,-56.6306,-41.5734,-28.5701,0,-35.8538 dDocent_Contig_167 20 . C G 1618.07 . AB=0.396694;ABP=14.2266;AC=1;AF=0.125;AN=8;AO=48;CIGAR=1X2M1X;DP=433;DPB=433;DPRA=1.27368;EPP=107.241;EPPR=726.111;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1899;QR=13121;RO=333;RPL=0;RPP=107.241;RPPR=726.111;RPR=48;RUN=1;SAF=48;SAP=107.241;SAR=0;SRF=333;SRP=726.111;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:121:35,48,38:35:1386:48,38:1899,1486:-153.829,-8.08305,-107.706,-42.2086,0,-144.84 0|0:102:102,0,0:102:4025:0,0:0,0:0,-30.7051,-362.263,-30.7051,-362.263,-362.263 0|0:122:109,0,13:109:4263:0,13:0,520:-10.4221,-43.2343,-393.689,0,-350.854,-346.94 0|0:88:87,0,0:87:3447:0,0:0,0:0,-26.1896,-309.904,-26.1896,-309.904,-309.904 dDocent_Contig_168 29 . C A 5855.81 . AB=0.664336;ABP=70.0982;AC=4;AF=0.5;AN=8;AO=190;CIGAR=1X;DP=286;DPB=286;DPRA=0;EPP=415.59;EPPR=211.472;GTI=0;LEN=1;MEANALT=1;MQM=59.6211;MQMR=60;NS=4;NUMALT=1;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7519;QR=3881;RO=96;RPL=0;RPP=415.59;RPPR=211.472;RPR=190;RUN=1;SAF=190;SAP=415.59;SAR=0;SRF=96;SRP=211.472;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:79:32,47:32:1297:47:1864:-143.954,0,-93.211 0/1:96:13,83:13:528:83:3312:-269.109,0,-18.9676 0/1:71:33,38:33:1325:38:1493:-113.25,0,-98.1388 0/1:40:18,22:18:731:22:850:-64.7581,0,-54.0732 dDocent_Contig_169 47 . G A 168.031 . AB=0.545455;ABP=3.20771;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=61;DPB=61;DPRA=0.66;EPP=16.0391;EPPR=113.913;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=233;QR=2142;RO=55;RPL=6;RPP=16.0391;RPPR=113.913;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:17:17,0:17:686:0:0:0,-5.11751,-62.0687 0/0:26:26,0:26:996:0:0:0,-7.82678,-89.9353 0/0:7:7,0:7:256:0:0:0,-2.10721,-23.3827 0/1:11:5,6:5:204:6:233:-18.025,0,-15.4327 dDocent_Contig_171 8 . T A 229.221 . AB=0.104167;ABP=68.3354;AC=0;AF=0;AN=8;AO=5;CIGAR=1X2M1X;DP=86;DPB=86;DPRA=1.26316;EPP=13.8677;EPPR=155.013;GTI=0;LEN=1;MEANALT=2;MQM=18.8;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0.985714;PAO=0;PQA=0;PQR=0;PRO=0;QA=195;QR=2749;RO=70;RPL=0;RPP=13.8677;RPPR=155.013;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=70;SRP=155.013;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:20:11,1,8:11:433:1,8:39,326:-23.8385,-26.4035,-61.716,0,-35.1166,-33.4638 0|0:32:31,0,1:31:1213:0,1:0,41:0,-9.33193,-109.049,-5.53839,-105.664,-105.363 0|0:28:22,4,2:22:873:4,2:156,80:-0.0325931,-0.634877,-71.2952,0,-65.9089,-71.4279 0|0:6:6,0,0:6:230:0,0:0,0:0,-1.80618,-21.066,-1.80618,-21.066,-21.066 dDocent_Contig_172 29 . C A 403.237 . AB=0.290323;ABP=26.6864;AC=1;AF=0.125;AN=8;AO=18;CIGAR=1X;DP=180;DPB=180;DPRA=1.57627;EPP=42.0968;EPPR=354.789;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=662;QR=6079;RO=162;RPL=0;RPP=42.0968;RPPR=354.789;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=162;SRP=354.789;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:62:44,18:44:1677:18:662:-41.2445,0,-132.525 0/0:34:34,0:34:1258:0:0:0,-10.235,-113.501 0/0:72:72,0:72:2712:0:0:0,-21.6742,-244.277 0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2124 dDocent_Contig_173 14 . A C 4338.93 . AB=0.517606;ABP=3.7749;AC=4;AF=0.5;AN=8;AO=147;CIGAR=1X;DP=284;DPB=284;DPRA=0;EPP=322.217;EPPR=300.502;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5821;QR=5414;RO=137;RPL=0;RPP=322.217;RPPR=300.502;RPR=147;RUN=1;SAF=147;SAP=322.217;SAR=0;SRF=137;SRP=300.502;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:81:41,40:41:1616:40:1585:-118.5,0,-121.293 0/1:76:25,51:25:999:51:2036:-160.553,0,-67.33 0/1:93:47,46:47:1861:46:1823:-136.293,0,-139.715 0/1:34:24,10:24:938:10:377:-24.0356,0,-74.4911 dDocent_Contig_174 76 . C T 1814.56 . AB=0.218692;ABP=370.744;AC=3;AF=0.375;AN=8;AO=130;CIGAR=1X;DP=698;DPB=698;DPRA=0;EPP=285.302;EPPR=1236.41;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4265;QR=19506;RO=568;RPL=130;RPP=285.302;RPPR=1236.41;RPR=0;RUN=1;SAF=130;SAP=285.302;SAR=0;SRF=568;SRP=1236.41;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:266:194,72:194:6675:72:2366:-133.127,0,-520.798 0/1:170:143,27:143:4889:27:875:-27.8748,0,-389.018 0/0:163:150,13:150:5145:13:425:0,-10.5026,-424.659 0/1:99:81,18:81:2797:18:599:-24.4213,0,-222.18 dDocent_Contig_175 12 . C T 162.767 . AB=0.285714;ABP=14.1779;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=144;DPB=144;DPRA=0.724138;EPP=20.3821;EPPR=298.331;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=281;QR=5439;RO=136;RPL=0;RPP=20.3821;RPPR=298.331;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=136;SRP=298.331;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:20,8:20:808:8:281:-17.1975,0,-64.605 0/0:57:57,0:57:2286:0:0:0,-17.1587,-205.898 0/0:20:20,0:20:789:0:0:0,-6.0206,-71.3263 0/0:39:39,0:39:1556:0:0:0,-11.7402,-140.276 dDocent_Contig_176 10 . G A 6133.12 . AB=0.504831;ABP=3.09422;AC=4;AF=0.5;AN=8;AO=209;CIGAR=1X;DP=414;DPB=414;DPRA=0;EPP=456.848;EPPR=448.162;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.995122;PAO=0;PQA=0;PQR=0;PRO=0;QA=8252;QR=8213;RO=205;RPL=0;RPP=456.848;RPPR=448.162;RPR=209;RUN=1;SAF=209;SAP=456.848;SAR=0;SRF=205;SRP=448.162;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:172:86,86:86:3451:86:3373:-251.86,0,-258.849 0/1:141:64,77:64:2547:77:3064:-233.392,0,-186.914 0/1:50:28,22:28:1123:22:854:-62.114,0,-86.301 0/1:51:27,24:27:1092:24:961:-71.4359,0,-83.2122 dDocent_Contig_177 1 . N G 112.323 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=113;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:73:-6.9307,-0.60206,0 ./.:.:.:.:.:.:.:. 1/1:1:0,1:0:0:1:40:-3.99568,-0.30103,0 ./.:.:.:.:.:.:.:. dDocent_Contig_178 24 . T C 1170.01 . AB=0.029703;ABP=391.08;AC=1;AF=0.125;AN=8;AO=15;CIGAR=1X3M1X;DP=395;DPB=395;DPRA=0;EPP=35.5824;EPPR=700.053;GTI=0;LEN=1;MEANALT=2.25;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=592;QR=12570;RO=321;RPL=0;RPP=35.5824;RPPR=700.053;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=321;SRP=700.053;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:134:114,8,8:114:4494:8,8:313,326:0,-8.5819,-375.898,-7.41152,-351.41,-374.737 0|0:155:106,2,46:106:4134:2,46:81,1823:-118.214,-143.443,-482.619,0,-333.182,-326.014 0|0:59:58,1,0:58:2263:1,0:40,0:0,-13.7651,-199.86,-17.4597,-200.161,-203.456 0|1:47:43,4,0:43:1679:4,0:158,0:-0.451564,0,-137.206,-13.3959,-138.41,-151.411 dDocent_Contig_179 11 . C G 402.338 . AB=0.326531;ABP=15.8176;AC=2;AF=0.25;AN=8;AO=16;CIGAR=1X;DP=165;DPB=165;DPRA=0.422414;EPP=37.7539;EPPR=322.217;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=630;QR=5838;RO=147;RPL=0;RPP=37.7539;RPPR=322.217;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=147;SRP=322.217;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:66:65,0:65:2589:0:0:0,-19.5669,-232.762 0/0:50:49,0:49:1965:0:0:0,-14.7505,-176.845 0/1:27:17,10:17:679:10:386:-26.9614,0,-53.3125 0/1:22:16,6:16:605:6:244:-15.7162,0,-48.1424 dDocent_Contig_180 28 . G A 195.122 . AB=0.192308;ABP=45.7716;AC=1;AF=0.125;AN=8;AO=10;CIGAR=1X;DP=146;DPB=146;DPRA=1.65957;EPP=24.725;EPPR=298.331;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=397;QR=5384;RO=136;RPL=0;RPP=24.725;RPPR=298.331;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=136;SRP=298.331;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:52:42,10:42:1674:10:397:-20.433,0,-135.227 0/0:53:53,0:53:2089:0:0:0,-15.9546,-188.198 0/0:28:28,0:28:1117:0:0:0,-8.42884,-100.815 0/0:13:13,0:13:504:0:0:0,-3.91339,-45.7021 dDocent_Contig_181 9 . C T 25738.3 . AB=0.526381;ABP=12.7489;AC=4;AF=0.5;AN=8;AO=848;CIGAR=1X6M;DP=1611;DPB=1611.14;DPRA=0;EPP=1844.42;EPPR=598.267;GTI=0;LEN=1;MEANALT=15;MQM=59.8408;MQMR=59.9161;NS=4;NUMALT=3;ODDS=4.44089e-16;PAIRED=0.994104;PAIREDR=0.954545;PAO=0;PQA=0;PQR=0;PRO=0;QA=32490;QR=11208;RO=286;RPL=0;RPP=1844.42;RPPR=624.051;RPR=848;RUN=1;SAF=848;SAP=1844.42;SAR=0;SRF=283;SRP=598.267;SRR=3;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:621:105,72,38,310:105:4140:72,38,310:2820,1487,11892:-944.359,-760.085,-1078.55,-853.703,-977.958,-1182.4,0,-124.261,-217.875,-246.82 0|1:419:76,30,18,215:76:2969:30,18,215:1174,705,8194:-649.252,-579.438,-814.477,-614.161,-765.539,-852.812,0,-151.379,-186.1,-179.348 0|1:462:86,33,23,260:86:3354:33,23,260:1284,894,9982:-792.598,-717.815,-983.567,-745.029,-920.044,-1013.79,0,-175.018,-202.23,-197.42 0|1:109:19,9,2,63:19:745:9,2,63:351,76,2422:-193.116,-171.24,-229.797,-192.603,-226.274,-253.268,0,-33.6741,-55.0356,-42.3033 dDocent_Contig_182 124 . C T 8314.25 . AB=0.804714;ABP=242.538;AC=5;AF=0.625;AN=8;AO=305;CIGAR=1X;DP=364;DPB=364;DPRA=0;EPP=665.309;EPPR=131.127;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=10303;QR=2005;RO=59;RPL=0;RPP=665.309;RPPR=131.127;RPR=305;RUN=1;SAF=0;SAP=665.309;SAR=305;SRF=0;SRP=131.127;SRR=59;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:110:20,90:20:654:90:3055:-242.079,0,-26.0531 0/1:89:18,71:18:624:71:2396:-189.111,0,-29.694 0/1:98:20,78:20:692:78:2657:-209.884,0,-33.1021 1/1:67:1,66:1:35:66:2195:-194.318,-16.6704,0 dDocent_Contig_183 15 . G A 76.8079 . AB=0.105263;ABP=208.729;AC=2;AF=0.25;AN=8;AO=27;CIGAR=1X;DP=396;DPB=396;DPRA=0;EPP=61.6401;EPPR=804.284;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.7209;NS=4;NUMALT=1;ODDS=0;PAIRED=0.925926;PAIREDR=0.848238;PAO=0;PQA=0;PQR=0;PRO=0;QA=1019;QR=14275;RO=369;RPL=0;RPP=61.6401;RPPR=804.284;RPR=27;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=369;SRP=804.284;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:163:153,10:153:5954:10:367:0,-15.6942,-502.098 0/1:87:77,10:77:2922:10:385:-8.81079,0,-236.911 0/0:81:80,1:80:3080:1:37:0,-20.6856,-273.575 0/1:65:59,6:59:2319:6:230:-1.49699,0,-189.317 dDocent_Contig_184 12 . G A 106859 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=3093;CIGAR=1X;DP=3216;DPB=3216;DPRA=0;EPP=6719.37;EPPR=265.758;GTI=0;LEN=1;MEANALT=1.5;MQM=59.9635;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.99806;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=123684;QR=4815;RO=121;RPL=0;RPP=6719.37;RPPR=265.758;RPR=3093;RUN=1;SAF=3093;SAP=6719.37;SAR=0;SRF=121;SRP=265.758;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1025:23,1001:23:927:1001:40112:-3522.22,-224.929,0 1/1:961:58,903:58:2335:903:36025:-3028.39,-78.9914,0 1/1:729:18,711:18:676:711:28375:-2490.03,-158.302,0 1/1:501:22,478:22:877:478:19172:-1644.62,-71.6804,0 dDocent_Contig_186 98 . N A 437.732 . 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AB=0.104294;ABP=224.7;AC=1;AF=0.125;AN=8;AO=36;CIGAR=1X;DP=660;DPB=660;DPRA=0;EPP=81.1833;EPPR=1355.84;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1442;QR=24607;RO=623;RPL=0;RPP=81.1833;RPPR=1355.84;RPR=36;RUN=1;SAF=36;SAP=81.1833;SAR=0;SRF=623;SRP=1355.84;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:226:211,15:211:8339:15:598:0,-13.8733,-695.926 0/0:203:201,2:201:7871:2:82:0,-53.3294,-700.242 0/1:163:146,17:146:5809:17:680:-12.4628,0,-473.543 0/0:68:65,2:65:2588:2:82:0,-12.7591,-225.304 dDocent_Contig_190 15 . G A 12516.6 . AB=0.176871;ABP=669.593;AC=8;AF=1;AN=8;AO=130;CIGAR=1X2M1X4M;DP=735;DPB=735;DPRA=0;EPP=285.302;EPPR=202.786;GTI=0;LEN=1;MEANALT=5.5;MQM=59.7385;MQMR=60;NS=4;NUMALT=4;ODDS=0;PAIRED=0.515385;PAIREDR=0.98913;PAO=0;PQA=0;PQR=0;PRO=0;QA=5064;QR=3573;RO=92;RPL=0;RPP=285.302;RPPR=202.786;RPR=130;RUN=1;SAF=130;SAP=285.302;SAR=0;SRF=92;SRP=202.786;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:310:45,94,5,103,60:45:1733:94,5,103,60:3698,203,4094,2335:-485.361,-194.77,-308.751,-482.164,-320.305,-622.939,-161.861,0,-287.398,-273.134,-307.043,-145.184,-432.579,-112.275,-431.26 1|1:296:32,83,15,114,49:32:1262:83,15,114,49:3232,600,4520,1911:-524.142,-268.213,-347.062,-484.349,-322.621,-583.668,-161.727,0,-216.136,-231.245,-376.728,-215.001,-431.136,-108.515,-465.811 1|1:79:13,11,0,39,16:13:499:11,0,39,16:441,0,1519,620:-130.886,-98.4646,-136.107,-134.799,-139.418,-175.753,-9.97671,-14.5916,-50.9286,-39.1884,-83.8703,-88.4883,-124.823,0,-120.007 1|1:50:2,11,3,27,5:2:79:11,3,27,5:428,118,1077,198:-116.762,-82.2023,-85.3919,-107.658,-78.9967,-113.256,-28.6631,0,-25.4572,-27.0369,-101.067,-72.4063,-97.8618,-18.8656,-106.063 dDocent_Contig_191 120 . G C 855.902 . AB=0.215;ABP=144.113;AC=3;AF=0.375;AN=8;AO=43;CIGAR=1X;DP=316;DPB=316;DPRA=0.574713;EPP=96.3836;EPPR=593.651;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1653;QR=10834;RO=272;RPL=0;RPP=96.3836;RPPR=593.651;RPR=43;RUN=1;SAF=0;SAP=96.3836;SAR=43;SRF=0;SRP=593.651;SRR=272;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:48:40,8:40:1591:8:316:-14.3524,0,-128.97 0/0:116:115,0:115:4592:0:0:0,-34.6184,-413.113 0/1:82:63,19:63:2525:19:690:-37.7126,0,-202.695 0/1:70:54,16:54:2126:16:647:-37.4918,0,-170.433 dDocent_Contig_192 38 . T A 12554.9 . AB=0.843023;ABP=178.799;AC=6;AF=0.75;AN=8;AO=378;CIGAR=2X;DP=413;DPB=413;DPRA=0;EPP=823.827;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=14880;QR=1370;RO=35;RPL=0;RPP=823.827;RPPR=79.0118;RPR=378;RUN=1;SAF=378;SAP=823.827;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:104:0,104:0:0:104:4100:-368.983,-31.3071,0 1|1:137:8,129:8:325:129:5069:-426.499,-11.6215,0 0|1:102:17,85:17:664:85:3341:-270.065,0,-29.3824 0|1:70:10,60:10:381:60:2370:-192.39,0,-13.5635 dDocent_Contig_193 18 . T C 173.835 . AB=0.191489;ABP=41.8658;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X;DP=113;DPB=113;DPRA=2.13636;EPP=22.5536;EPPR=226.672;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=358;QR=3904;RO=103;RPL=0;RPP=22.5536;RPPR=226.672;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=103;SRP=226.672;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:33:33,0:33:1243:0:0:0,-9.93399,-112.151 0/1:47:37,9:37:1405:9:358:-18.6054,0,-112.752 0/0:17:17,0:17:648:0:0:0,-5.11751,-58.6499 0/0:16:16,0:16:608:0:0:0,-4.81648,-55.0515 dDocent_Contig_194 45 . A C 706.009 . 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AB=0.153846;ABP=192.43;AC=2;AF=0.25;AN=8;AO=31;CIGAR=1X;DP=328;DPB=328;DPRA=0.717949;EPP=70.3259;EPPR=647.938;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1253;QR=11804;RO=297;RPL=0;RPP=70.3259;RPPR=647.938;RPR=31;RUN=1;SAF=0;SAP=70.3259;SAR=31;SRF=0;SRP=647.938;SRR=297;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:120:100,20:100:3963:20:808:-36.9118,0,-320.539 0/0:104:104,0:104:4115:0:0:0,-31.3071,-370.331 0/0:42:39,3:39:1560:3:122:0,-1.27077,-129.267 0/1:62:54,8:54:2166:8:323:-10.7747,0,-176.451 dDocent_Contig_196 14 . C T 5733.6 . AB=0.482759;ABP=4.0586;AC=4;AF=0.5;AN=8;AO=196;CIGAR=1X;DP=406;DPB=406;DPRA=0;EPP=428.619;EPPR=459.02;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7781;QR=8440;RO=210;RPL=0;RPP=428.619;RPPR=459.02;RPR=196;RUN=1;SAF=196;SAP=428.619;SAR=0;SRF=210;SRP=459.02;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:133:66,67:66:2666:67:2650:-198.584,0,-200.006 0/1:167:92,75:92:3672:75:2981:-218.103,0,-280.213 0/1:63:35,28:35:1423:28:1117:-81.8469,0,-109.351 0/1:43:17,26:17:679:26:1033:-80.3147,0,-48.4902 dDocent_Contig_197 8 . T C 277.086 . AB=0.15;ABP=151.973;AC=3;AF=0.375;AN=8;AO=21;CIGAR=1X;DP=195;DPB=195;DPRA=0.848485;EPP=48.6112;EPPR=380.846;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.857143;PAIREDR=0.994253;PAO=0;PQA=0;PQR=0;PRO=0;QA=808;QR=6691;RO=174;RPL=0;RPP=48.6112;RPPR=380.846;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=174;SRP=380.846;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:55:55,0:55:2120:0:0:0,-16.5566,-191.028 0/1:60:54,6:54:2086:6:227:-2.73064,0,-169.907 0/1:48:37,11:37:1406:11:426:-24.2453,0,-112.372 0/1:32:28,4:28:1079:4:155:-4.69248,0,-87.7816 dDocent_Contig_198 159 . C G 4658.44 . AB=0.0526316;ABP=201.186;AC=0;AF=0;AN=8;AO=6;CIGAR=1X1M1X;DP=195;DPB=195;DPRA=0;EPP=16.0391;EPPR=44.1367;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=235;QR=1249;RO=33;RPL=6;RPP=16.0391;RPPR=44.1367;RPR=0;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=74.6689;SRR=33;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:44:4,0,40:4:146:0,40:0,1495:-121.57,-122.774,-134.699,0,-12.2909,-0.24966 0|0:70:10,4,56:10:380:4,56:157,2170:-175.251,-165.348,-195.306,0,-18.2377,-14.2963 0|0:44:12,2,30:12:458:2,30:78,1090:-85.3529,-82.552,-119.529,0,-31.1538,-28.5357 0|0:37:7,0,30:7:265:0,30:0,1097:-87.8805,-89.9877,-111.713,0,-22.1008,-13.0699 dDocent_Contig_199 17 . C T 4093.77 . AB=0.449686;ABP=10.0027;AC=4;AF=0.5;AN=8;AO=143;CIGAR=1X;DP=318;DPB=318;DPRA=0;EPP=225.336;EPPR=365.845;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.9714;NS=4;NUMALT=1;ODDS=0;PAIRED=0.811189;PAIREDR=0.96;PAO=0;PQA=0;PQR=0;PRO=0;QA=5662;QR=6911;RO=175;RPL=0;RPP=313.531;RPPR=383.018;RPR=143;RUN=1;SAF=132;SAP=225.336;SAR=11;SRF=173;SRP=365.845;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:92:41,51:41:1627:51:2027:-154.921,0,-118.969 0/1:100:54,46:54:2108:46:1814:-133.371,0,-159.792 0/1:62:37,25:37:1452:25:987:-70.4634,0,-112.26 0/1:64:43,21:43:1724:21:834:-56.1111,0,-136.11 dDocent_Contig_201 9 . T C 943.938 . AB=0.168091;ABP=338.871;AC=3;AF=0.375;AN=8;AO=64;CIGAR=1X;DP=554;DPB=554;DPRA=0;EPP=141.985;EPPR=1067.03;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2441;QR=18750;RO=490;RPL=0;RPP=141.985;RPPR=1067.03;RPR=64;RUN=1;SAF=64;SAP=141.985;SAR=0;SRF=490;SRP=1067.03;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:203:198,5:198:7588:5:185:0,-44.1006,-665.74 0/1:165:140,25:140:5321:25:969:-37.8536,0,-429.222 0/1:104:87,17:87:3333:17:638:-26.4457,0,-268.8 0/1:82:65,17:65:2508:17:649:-34.0611,0,-201.234 dDocent_Contig_202 26 . G T 5987.64 . AB=0.1625;ABP=82.1605;AC=0;AF=0;AN=8;AO=13;CIGAR=3M1X1M;DP=242;DPB=280.4;DPRA=0;EPP=31.2394;EPPR=83.3548;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=522;QR=1441;RO=37;RPL=0;RPP=31.2394;RPPR=83.3548;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:80:17,50,13:17:673:50,13:1956,522:-155.672,0,-40.3355,-117.775,-12.3717,-169.253 0|0:52:6,46,0:6:230:46,0:1807,0:-147.197,0,-5.41202,-149.004,-19.2594,-167.879 0|0:59:6,53,0:6:229:53,0:2022,0:-164.419,0,-3.21204,-166.226,-19.1666,-185.011 0|0:51:8,43,0:8:309:43,0:1690,0:-136.962,0,-12.8179,-139.37,-25.7622,-164.746 dDocent_Contig_225 106 . N G 144.159 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=5;CIGAR=2X;DP=5;DPB=49;DPRA=0;EPP=13.8677;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=51;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=52;PQA=1756;PQR=0;PRO=0;QA=155;QR=0;RO=0;RPL=0;RPP=13.8677;RPPR=0;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:3:0,3:0:0:3:85:-7.63743,-0.90309,0 .:.:.:.:.:.:.:. 1|1:1:0,1:0:0:1:35:-3.14172,-0.30103,0 1|1:1:0,1:0:0:1:35:-3.1546,-0.30103,0 dDocent_Contig_229 31 . A G 5961.54 . 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AB=0.097561;ABP=60.6867;AC=4;AF=0.5;AN=8;AO=4;CIGAR=9M1X2M;DP=170;DPB=162.833;DPRA=0;EPP=11.6962;EPPR=141.985;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=4;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=144;QR=2057;RO=64;RPL=4;RPP=11.6962;RPPR=141.985;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=64;SRP=141.985;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:68:10,27,22,8,0:10:323:27,22,8,0:912,721,273,0:-103.113,-32.1961,-50.119,-47.8791,0,-67.3059,-83.9695,-36.091,-51.7743,-107.612,-106.124,-58.2468,-73.9286,-110.021,-132.175 0|1:37:23,11,3,0,0:23:737:11,3,0,0:372,99,0,0:-23.2407,0,-56.0712,-22.1616,-51.3769,-80.6375,-30.1644,-59.3826,-81.5406,-89.5455,-30.1644,-59.3826,-81.5406,-89.5455,-89.5455 0|1:41:22,7,8,0,4:22:703:7,8,0,4:227,217,0,144:-11.7021,0,-54.5372,-1.23479,-39.5395,-55.4471,-18.3247,-56.6444,-57.8553,-74.9625,-6.56162,-44.8885,-46.1009,-63.2079,-62.0038 0|1:24:9,8,7,0,0:9:294:8,7,0,0:258,221,0,0:-18.099,0,-21.342,-3.033,-5.9766,-24.6721,-20.8083,-23.7503,-26.7793,-44.5552,-20.8083,-23.7503,-26.7793,-44.5552,-44.5552 dDocent_Contig_231 71 . T C 135.771 . AB=0.315789;ABP=8.61041;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=64;DPB=64;DPRA=1.26667;EPP=16.0391;EPPR=128.956;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=224;QR=2198;RO=58;RPL=6;RPP=16.0391;RPPR=128.956;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:14:14,0:14:523:0:0:0,-4.21442,-47.4094 0/0:19:19,0:19:739:0:0:0,-5.71957,-66.8411 0/1:19:13,6:13:503:6:224:-14.799,0,-39.8992 0/0:12:12,0:12:433:0:0:0,-3.61236,-39.3056 dDocent_Contig_232 97 . T G 2159.11 . AB=0.333333;ABP=79.7357;AC=4;AF=0.5;AN=8;AO=106;CIGAR=1X;DP=318;DPB=318;DPRA=0;EPP=233.186;EPPR=463.362;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3510;QR=7255;RO=212;RPL=106;RPP=233.186;RPPR=463.362;RPR=0;RUN=1;SAF=106;SAP=233.186;SAR=0;SRF=212;SRP=463.362;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:126:77,49:77:2643:49:1643:-110.229,0,-200.2 0/1:91:58,33:58:1991:33:1067:-68.9308,0,-152.076 0/1:63:52,11:52:1768:11:375:-15.1144,0,-140.44 0/1:38:25,13:25:853:13:425:-27.1269,0,-65.644 dDocent_Contig_233 98 . N T 1740.08 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=55;CIGAR=1X;DP=55;DPB=55;DPRA=0;EPP=122.441;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=4;NUMALT=1;ODDS=6.77626e-21;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1911;QR=0;RO=0;RPL=55;RPP=122.441;RPPR=0;RPR=0;RUN=1;SAF=55;SAP=122.441;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:16:0,16:0:0:16:544:-49.279,-4.81648,0 1/1:14:0,14:0:0:14:483:-43.7982,-4.21442,0 1/1:14:0,14:0:0:14:493:-44.7026,-4.21442,0 1/1:11:0,11:0:0:11:391:-35.5297,-3.31133,0 dDocent_Contig_234 97 . T A 3412.33 . AB=0.62069;ABP=14.0174;AC=5;AF=0.625;AN=8;AO=122;CIGAR=1X;DP=155;DPB=155;DPRA=0;EPP=267.93;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=0.983607;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4113;QR=1114;RO=33;RPL=122;RPP=267.93;RPPR=74.6689;RPR=0;RUN=1;SAF=122;SAP=267.93;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:68:0,68:0:0:68:2288:-206.188,-20.47,0 0/1:51:21,30:21:708:30:1009:-75.7622,0,-48.6833 0/1:24:8,16:8:272:16:556:-43.1438,0,-17.5871 0/1:12:4,8:4:134:8:260:-20.106,0,-8.77857 dDocent_Contig_235 15 . T C 1800.72 . AB=0.186992;ABP=421.698;AC=4;AF=0.5;AN=8;AO=92;CIGAR=1X;DP=492;DPB=492;DPRA=0;EPP=202.786;EPPR=871.599;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3694;QR=16127;RO=400;RPL=0;RPP=202.786;RPPR=871.599;RPR=92;RUN=1;SAF=92;SAP=202.786;SAR=0;SRF=400;SRP=871.599;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:161:147,14:147:5916:14:567:-2.90645,0,-483.737 0/1:158:117,41:117:4706:41:1648:-100.979,0,-375.875 0/1:90:67,23:67:2716:23:917:-55.7347,0,-217.443 0/1:83:69,14:69:2789:14:562:-25.9366,0,-226.122 dDocent_Contig_236 26 . A G 60.4469 . AB=0.116667;ABP=79.5909;AC=2;AF=0.25;AN=8;AO=7;CIGAR=1X;DP=137;DPB=137;DPRA=0.779221;EPP=18.2106;EPPR=285.302;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=286;QR=5169;RO=130;RPL=0;RPP=18.2106;RPPR=285.302;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=130;SRP=285.302;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:55:55,0:55:2201:0:0:0,-16.5566,-198.258 0/1:43:39,4:39:1526:4:163:-2.11414,0,-124.634 0/0:22:22,0:22:881:0:0:0,-6.62266,-79.5965 0/1:17:14,3:14:561:3:123:-6.34728,0,-45.7156 dDocent_Contig_237 98 . N G 2293.37 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=83;CIGAR=1X;DP=83;DPB=83;DPRA=0;EPP=183.243;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=58.9518;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=0.843373;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=2540;QR=0;RO=0;RPL=83;RPP=183.243;RPPR=0;RPR=0;RUN=1;SAF=83;SAP=183.243;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:35:0,35:0:0:35:1122:-101.268,-10.5361,0 1/1:21:0,21:0:0:21:632:-57.1645,-6.32163,0 1/1:18:0,18:0:0:18:533:-47.2578,-5.41854,0 1/1:9:0,9:0:0:9:253:-23.0445,-2.70927,0 dDocent_Contig_239 74 . C T 239.525 . AB=0.182692;ABP=93.9616;AC=4;AF=0.5;AN=8;AO=19;CIGAR=1X;DP=104;DPB=104;DPRA=0;EPP=44.2683;EPPR=187.585;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.964706;PAO=0;PQA=0;PQR=0;PRO=0;QA=659;QR=2921;RO=85;RPL=19;RPP=44.2683;RPPR=187.585;RPR=0;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=85;SRP=187.585;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:22,3:22:763:3:104:-2.17734,0,-61.4653 0/1:33:28,5:28:974:5:174:-6.06796,0,-78.0407 0/1:30:21,9:21:700:9:311:-19.2944,0,-54.2791 0/1:16:14,2:14:484:2:70:-1.83092,0,-39.0732 dDocent_Contig_240 64 . C G 318.103 . AB=0.27451;ABP=25.534;AC=3;AF=0.375;AN=8;AO=14;CIGAR=1X;DP=65;DPB=65;DPRA=1.21429;EPP=33.4109;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=543;QR=2032;RO=51;RPL=14;RPP=33.4109;RPPR=113.755;RPR=0;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:14:14,0:14:561:0:0:0,-4.21442,-50.834 0/1:12:9,3:9:356:3:109:-6.55514,0,-28.7897 0/1:27:17,10:17:676:10:394:-27.691,0,-53.045 0/1:12:11,1:11:439:1:40:-0.383319,0,-36.2534 dDocent_Contig_241 13 . T C 3298.8 . AB=0.311111;ABP=128.521;AC=4;AF=0.5;AN=8;AO=126;CIGAR=1X1M;DP=405;DPB=405;DPRA=0;EPP=276.616;EPPR=604.508;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=56.426;NS=4;NUMALT=2;ODDS=2.77556e-17;PAIRED=0.992063;PAIREDR=0.891697;PAO=0;PQA=0;PQR=0;PRO=0;QA=5067;QR=11142;RO=277;RPL=0;RPP=276.616;RPPR=604.508;RPR=126;RUN=1;SAF=126;SAP=276.616;SAR=0;SRF=277;SRP=604.508;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:121:90,0,31:90:3612:0,31:0,1253:-76.6114,-103.704,-376.776,0,-273.467,-264.135 0|1:184:124,0,60:124:5000:0,60:0,2398:-160.572,-197.899,-606.454,0,-408.954,-390.892 0|1:66:38,0,28:38:1533:0,28:0,1136:-82.6517,-94.0909,-213.281,0,-119.586,-111.157 0|1:34:25,2,7:25:997:2,7:81,280:-15.5348,-16.3803,-95.4033,0,-72.9383,-77.5115 dDocent_Contig_242 38 . T C 15693.8 . AB=0.860465;ABP=51.5402;AC=7;AF=0.875;AN=8;AO=462;CIGAR=1X;DP=483;DPB=483;DPRA=0;EPP=1006.23;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.995671;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=18213;QR=846;RO=21;RPL=0;RPP=1006.23;RPPR=48.6112;RPR=462;RUN=1;SAF=462;SAP=1006.23;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:170:5,165:5:201:165:6540:-569.867,-32.7046,0 1/1:126:3,123:3:122:123:4860:-425.936,-26.5573,0 1/1:144:7,137:7:283:137:5381:-458.306,-17.5047,0 0/1:43:6,37:6:240:37:1432:-116.189,0,-9.03025 dDocent_Contig_243 42 . T A 3646.41 . AB=0.244275;ABP=375.061;AC=4;AF=0.5;AN=8;AO=160;CIGAR=1X;DP=655;DPB=655;DPRA=0;EPP=350.446;EPPR=1077.89;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6293;QR=19654;RO=495;RPL=0;RPP=350.446;RPPR=1077.89;RPR=160;RUN=1;SAF=160;SAP=350.446;SAR=0;SRF=495;SRP=1077.89;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:196:148,48:148:5926:48:1846:-107.344,0,-474.12 0/1:218:164,54:164:6491:54:2148:-127.873,0,-518.313 0/1:125:95,30:95:3734:30:1201:-70.7353,0,-298.451 0/1:116:88,28:88:3503:28:1098:-64.1776,0,-280.392 dDocent_Contig_244 38 . A G 9587.72 . 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AB=0.257143;ABP=20.9405;AC=2;AF=0.25;AN=8;AO=9;CIGAR=1X;DP=103;DPB=103;DPRA=0.514706;EPP=22.5536;EPPR=207.129;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=0.989362;PAO=0;PQA=0;PQR=0;PRO=0;QA=310;QR=3186;RO=94;RPL=9;RPP=22.5536;RPPR=207.129;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=94;SRP=207.129;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:47:47,0:47:1613:0:0:0,-14.1484,-145.459 0/0:21:21,0:21:726:0:0:0,-6.32163,-65.6617 0/1:22:18,4:18:605:4:142:-6.50661,0,-48.1455 0/1:13:8,5:8:242:5:168:-11.5376,0,-18.1636 dDocent_Contig_247 46 . G T 1263.03 . 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T C 10001.3 . 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T C 912.81 . AB=0.172078;ABP=290.688;AC=2;AF=0.25;AN=8;AO=59;CIGAR=1X2M1X;DP=533;DPB=533;DPRA=2.13426;EPP=131.127;EPPR=1010.57;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=55.222;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.836207;PAO=0;PQA=0;PQR=0;PRO=0;QA=2277;QR=17799;RO=464;RPL=0;RPP=131.127;RPPR=1010.57;RPR=59;RUN=1;SAF=59;SAP=131.127;SAR=0;SRF=464;SRP=1010.57;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:153:143,6:143:5476:6:225:0,-24.6272,-441.76 0|1:174:128,41:128:4910:41:1584:-91.5644,0,-382.586 0|1:134:122,12:122:4677:12:468:-2.13453,0,-372.293 0|0:72:71,0:71:2736:0:0:0,-21.3731,-237.757 dDocent_Contig_262 23 . A C 35924 . AB=0.167581;ABP=1578.06;AC=8;AF=1;AN=8;AO=275;CIGAR=1X2M;DP=1641;DPB=1641;DPRA=0;EPP=600.165;EPPR=120.27;GTI=0;LEN=1;MEANALT=7.75;MQM=37.9236;MQMR=54.2593;NS=4;NUMALT=3;ODDS=0;PAIRED=0.807273;PAIREDR=0.296296;PAO=0;PQA=0;PQR=0;PRO=0;QA=9206;QR=2116;RO=54;RPL=0;RPP=600.165;RPPR=120.27;RPR=275;RUN=1;SAF=275;SAP=600.165;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:473:13,40,309,83:13:510:40,309,83:1572,12322,2884:-1069.17,-953.412,-983.196,-181.843,-103.992,-130.652,-849.405,-771.557,0,-866.244 1|1:493:20,37,336,70:20:788:37,336,70:1475,13422,2323:-1066.94,-955.899,-1009.21,-113.76,-61.1469,-77.0729,-894.736,-842.129,0,-938.114 1|1:431:9,44,281,67:9:358:44,281,67:1746,11247,1875:-922.269,-791.264,-807.342,-105.959,-1.55139,-50.6979,-789.663,-685.274,0,-798.818 1|1:244:12,13,143,55:12:460:13,143,55:519,5672,2124:-539.507,-505.263,-539.007,-128.275,-128.079,-122.887,-377.193,-376.995,0,-398.294 dDocent_Contig_264 45 . T G 70794.8 . AB=0.797183;ABP=819.992;AC=8;AF=1;AN=8;AO=3241;CIGAR=1X1M;DP=3939;DPB=3939;DPRA=0;EPP=7006.05;EPPR=226.672;GTI=0;LEN=1;MEANALT=6.75;MQM=31.705;MQMR=57.4854;NS=4;NUMALT=2;ODDS=0;PAIRED=0.87689;PAIREDR=0.786408;PAO=0;PQA=0;PQR=0;PRO=0;QA=91068;QR=4088;RO=103;RPL=4;RPP=7006.05;RPPR=226.672;RPR=3237;RUN=1;SAF=3241;SAP=7040.75;SAR=0;SRF=103;SRP=226.672;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:1326:49,100,1090:49:1939:100,1090:3887,30909:-2334.73,-2037.32,-2166.58,-168.748,-15.9444,0 1|1:1065:19,94,849:19:760:94,849:3729,23050:-1857.88,-1563.34,-1595.56,-239.779,0,-44.7275 1|1:1066:14,59,903:14:549:59,903:2251,25541:-2046.84,-1869.96,-1896.34,-227.692,-90.7216,0 1|1:482:21,28,399:21:840:28,399:1118,11568:-840.949,-757.167,-817.853,-50.988,-29.9967,0 dDocent_Contig_265 13 . G T 350.734 . AB=0.169643;ABP=109.18;AC=1;AF=0.125;AN=8;AO=19;CIGAR=1X;DP=265;DPB=265;DPRA=2.19608;EPP=44.2683;EPPR=537.193;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=771;QR=9857;RO=246;RPL=0;RPP=44.2683;RPPR=537.193;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=246;SRP=537.193;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:112:93,19:93:3708:19:771:-35.9943,0,-300.018 0/0:71:71,0:71:2862:0:0:0,-21.3731,-257.673 0/0:32:32,0:32:1297:0:0:0,-9.63296,-116.992 0/0:50:50,0:50:1990:0:0:0,-15.0515,-179.289 dDocent_Contig_267 7 . T C 4139.25 . AB=0.185345;ABP=1599.12;AC=4;AF=0.5;AN=8;AO=344;CIGAR=1X;DP=1856;DPB=1856;DPRA=0;EPP=749.997;EPPR=3223.3;GTI=0;LEN=1;MEANALT=2.5;MQM=34.6308;MQMR=59.6669;NS=4;NUMALT=1;ODDS=0;PAIRED=0.956395;PAIREDR=0.999326;PAO=0;PQA=0;PQR=0;PRO=0;QA=13222;QR=56436;RO=1483;RPL=0;RPP=749.997;RPPR=3223.3;RPR=344;RUN=1;SAF=344;SAP=749.997;SAR=0;SRF=1483;SRP=3223.3;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:591:456,120:456:17377:120:4603:-175.098,0,-1371 0/1:534:428,99:428:16294:99:3826:-109.011,0,-1306.7 0/1:520:426,90:426:16166:90:3443:-100.954,0,-1296.12 0/1:211:173,35:173:6599:35:1350:-34.3513,0,-530.826 dDocent_Contig_271 205 . A T 263.108 . AB=0.2;ABP=61.6401;AC=1;AF=0.125;AN=8;AO=15;CIGAR=1X;DP=181;DPB=181;DPRA=2.12264;EPP=35.5824;EPPR=363.475;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=553;QR=6046;RO=166;RPL=15;RPP=35.5824;RPPR=363.475;RPR=0;RUN=1;SAF=0;SAP=35.5824;SAR=15;SRF=0;SRP=363.475;SRR=166;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:58:58,0:58:2103:0:0:0,-17.4597,-189.528 0/1:75:60,15:60:2180:15:553:-27.5326,0,-173.876 0/0:31:31,0:31:1133:0:0:0,-9.33193,-102.28 0/0:17:17,0:17:630:0:0:0,-5.11751,-57.0359 dDocent_Contig_272 86 . G A 2603.51 . AB=0.675497;ABP=43.4054;AC=4;AF=0.5;AN=8;AO=102;CIGAR=1X;DP=151;DPB=151;DPRA=0;EPP=224.5;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3445;QR=1641;RO=49;RPL=102;RPP=224.5;RPPR=109.412;RPR=0;RUN=1;SAF=102;SAP=224.5;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:37:13,24:13:412:24:801:-61.2618,0,-26.2473 0/1:63:22,41:22:742:41:1385:-105.98,0,-48.1301 0/1:26:10,16:10:350:16:549:-41.9087,0,-24.0107 0/1:25:4,21:4:137:21:710:-56.6896,0,-5.14231 dDocent_Contig_273 98 . N A 170.959 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=5;CIGAR=2X;DP=5;DPB=5;DPRA=0;EPP=13.8677;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=173;QR=0;RO=0;RPL=5;RPP=13.8677;RPPR=0;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:1:0,1:0:0:1:36:-3.59827,-0.30103,0 1|1:1:0,1:0:0:1:35:-3.49863,-0.30103,0 1|1:3:0,3:0:0:3:102:-9.5169,-0.90309,0 .:.:.:.:.:.:.:. dDocent_Contig_274 11 . A T 2879.17 . AB=0.298387;ABP=134.349;AC=4;AF=0.5;AN=8;AO=111;CIGAR=1X;DP=372;DPB=372;DPRA=0;EPP=244.044;EPPR=567.593;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=2.77556e-17;PAIRED=0.00900901;PAIREDR=0.984615;PAO=0;PQA=0;PQR=0;PRO=0;QA=4493;QR=10379;RO=260;RPL=0;RPP=244.044;RPPR=567.593;RPR=111;RUN=1;SAF=111;SAP=244.044;SAR=0;SRF=260;SRP=567.593;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:103:72,30:72:2878:30:1213:-78.3345,0,-228.022 0/1:151:111,40:111:4427:40:1612:-99.8484,0,-352.91 0/1:61:36,25:36:1446:25:1012:-73.0111,0,-112.027 0/1:57:41,16:41:1628:16:656:-42.2125,0,-129.595 dDocent_Contig_275 142 . C T 127.375 . AB=0.122642;ABP=134.118;AC=2;AF=0.25;AN=8;AO=15;CIGAR=1X;DP=172;DPB=172;DPRA=6.03704;EPP=35.5824;EPPR=343.931;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=580;QR=5982;RO=157;RPL=0;RPP=35.5824;RPPR=343.931;RPR=15;RUN=1;SAF=0;SAP=35.5824;SAR=15;SRF=0;SRP=343.931;SRR=157;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:57:55,2:55:2086:2:65:0,-10.9853,-181.752 0/1:64:57,7:57:2206:7:282:-6.48667,0,-179.454 0/1:42:36,6:36:1337:6:233:-8.6945,0,-107.951 0/0:9:9,0:9:353:0:0:0,-2.70927,-32.1313 dDocent_Contig_276 20 . C T 5240.07 . AB=0.406926;ABP=37.7727;AC=4;AF=0.5;AN=8;AO=188;CIGAR=1X;DP=462;DPB=462;DPRA=0;EPP=411.247;EPPR=597.994;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.994681;PAIREDR=0.989051;PAO=0;PQA=0;PQR=0;PRO=0;QA=7419;QR=10923;RO=274;RPL=0;RPP=411.247;RPPR=597.994;RPR=188;RUN=1;SAF=188;SAP=411.247;SAR=0;SRF=274;SRP=597.994;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:92:64,28:64:2569:28:1124:-73.7501,0,-203.647 0/1:149:75,74:75:3028:74:2952:-220.932,0,-227.742 0/1:104:71,33:71:2807:33:1278:-83.9846,0,-221.427 0/1:117:64,53:64:2519:53:2065:-150.83,0,-191.613 dDocent_Contig_277 52 . A C 57500.6 . AB=0.902386;ABP=651.348;AC=7;AF=0.875;AN=8;AO=1826;CIGAR=1X;DP=1898;DPB=1898;DPRA=0;EPP=3968.12;EPPR=155.013;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.960022;PAIREDR=0.971429;PAO=0;PQA=0;PQR=0;PRO=0;QA=66414;QR=2574;RO=70;RPL=1826;RPP=3968.12;RPPR=155.013;RPR=0;RUN=1;SAF=1826;SAP=3968.12;SAR=0;SRF=70;SRP=155.013;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:498:14,484:14:499:484:17587:-1537.05,-104.669,0 1/1:447:6,441:6:221:441:16047:-1423.54,-114.314,0 1/1:492:6,485:6:219:485:17603:-1563.68,-128.085,0 0/1:461:44,416:44:1635:416:15177:-1226.71,0,-8.59808 dDocent_Contig_278 98 . N T 243.565 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=8;CIGAR=1X;DP=8;DPB=8;DPRA=0;EPP=20.3821;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=9.05174;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=267;QR=0;RO=0;RPL=8;RPP=20.3821;RPPR=0;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:8:0,8:0:0:8:267:-24.3564,-2.40824,0 dDocent_Contig_279 7 . C T 13840.1 . AB=0.0405509;ABP=2399.44;AC=0;AF=0;AN=8;AO=53;CIGAR=2M1X2M1X14M;DP=1307;DPB=1301.35;DPRA=0;EPP=118.098;EPPR=289.645;GTI=0;LEN=1;MEANALT=24.5;MQM=60;MQMR=60;NS=4;NUMALT=6;ODDS=0;PAIRED=1;PAIREDR=0.80303;PAO=0.6;PQA=23.6;PQR=23.6;PRO=0.6;QA=2043;QR=5172;RO=132;RPL=0;RPP=118.098;RPPR=289.645;RPR=53;RUN=1;SAF=53;SAP=118.098;SAR=0;SRF=132;SRP=289.645;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:450:42,24,14,31,30,94,90:42:1658:24,14,31,30,94,90:906,541,1211,1195,3730,3622:-456.458,-395.119,-524.322,-424.666,-487.112,-556.88,-369.548,-431.994,-461.541,-496.644,-370.696,-433.142,-462.689,-407.571,-498.093,-162.077,-224.523,-254.07,-198.952,-200.1,-270.209,-170.597,-233.043,-262.59,-207.472,-208.62,0,-279.933 0|0:396:48,34,10,16,13,105,81:48:1899:34,10,16,13,105,81:1280,382,618,507,4178,3243:-440.387,-350.229,-496.284,-423.495,-475.177,-576.774,-404.089,-455.772,-529.037,-555.563,-413.164,-464.847,-538.112,-518.707,-565.541,-110.856,-162.539,-235.805,-216.399,-225.474,-235.539,-187.692,-239.375,-312.64,-293.235,-302.31,0,-319.599 0|0:323:30,27,18,16,13,78,70:30:1154:27,18,16,13,78,70:999,699,632,513,3121,2821:-385.839,-313.152,-399.763,-337.432,-350.453,-426.753,-342.862,-355.883,-380.164,-432.785,-352.66,-365.681,-389.961,-395.391,-443.486,-137.78,-150.801,-175.081,-180.511,-190.309,-209.039,-162.354,-175.375,-199.655,-205.085,-214.883,0,-236.021 0|0:138:12,21,11,15,9,18,25:12:461:21,11,15,9,18,25:796,421,584,359,713,1007:-106.81,-45.1592,-76.6784,-75.8753,-48.4526,-110.405,-62.4349,-35.0122,-65.7282,-95.7604,-80.8581,-53.4353,-84.1515,-70.7111,-115.99,-51.7444,-24.3217,-55.0378,-41.5973,-60.0206,-84.1669,-27.4228,0,-30.7162,-17.2756,-35.699,-6.58483,-57.7383 dDocent_Contig_280 1 . N G 145.093 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=6.27915;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=157;QR=0;RO=0;RPL=0;RPP=11.6962;RPPR=0;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:4:0,4:0:0:4:157:-14.5085,-1.20412,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_281 34 . A G 4208.11 . AB=0.0342679;ABP=607.782;AC=0;AF=0;AN=8;AO=11;CIGAR=2M1X2M1X12M;DP=428;DPB=440.056;DPRA=0;EPP=26.8965;EPPR=259.244;GTI=0;LEN=1;MEANALT=12.3333;MQM=60;MQMR=60;NS=4;NUMALT=6;ODDS=0;PAIRED=1;PAIREDR=0.940678;PAO=0;PQA=0;PQR=0;PRO=0;QA=429;QR=4624;RO=118;RPL=0;RPP=26.8965;RPPR=259.244;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=118;SRP=259.244;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:157:31,1,14,8,14,18,50:31:1226:1,14,8,14,18,50:39,566,314,544,643,1985:-154.076,-160.202,-260.8,-116.74,-214.435,-213.426,-137.581,-235.276,-191.815,-236.073,-118.707,-216.401,-172.94,-193.781,-215.392,-112.89,-210.583,-167.122,-187.963,-169.089,-208.37,0,-97.6981,-54.2354,-75.0777,-56.2026,-50.387,-85.8526 0|0:121:11,0,15,1,8,10,51:11:437:0,15,1,8,10,51:0,603,39,313,381,2016:-176.291,-179.602,-215.581,-129.91,-165.889,-161.373,-176.397,-212.375,-162.683,-212.074,-153.868,-189.847,-140.154,-186.641,-187.439,-149.164,-185.142,-135.45,-181.936,-159.408,-182.132,-13.7148,-49.6947,0,-46.4888,-23.96,-19.2567,-34.3422 0|0:107:60,0,8,0,5,5,27:60:2333:0,8,0,5,5,27:0,318,0,197,168,1075:-70.4682,-88.53,-280.24,-62.3475,-254.059,-251.651,-88.53,-280.24,-254.059,-280.24,-72.3226,-264.034,-237.852,-264.034,-262.528,-76.0102,-267.715,-241.535,-267.715,-251.509,-266.21,0,-191.723,-165.541,-191.723,-175.515,-179.199,-183.595 0|0:43:16,4,1,2,6,2,9:16:628:4,1,2,6,2,9:160,41,76,242,79,367:-25.4654,-17.1018,-67.5438,-26.8974,-65.3636,-78.2431,-24.0507,-62.516,-72.3121,-75.0944,-10.3328,-48.7985,-58.5947,-55.7472,-60.173,-23.7814,-62.2472,-72.0433,-69.1957,-55.4783,-74.8256,0,-38.4663,-48.2627,-45.4153,-31.6971,-45.1463,-48.938 dDocent_Contig_282 11 . C A 84.1008 . AB=0.142857;ABP=49.5419;AC=2;AF=0.25;AN=8;AO=6;CIGAR=1M1D1X;DP=86;DPB=84;DPRA=0.954545;EPP=16.0391;EPPR=176.728;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=244;QR=3148;RO=80;RPL=0;RPP=16.0391;RPPR=176.728;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=80;SRP=176.728;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:29:29,0:29:1147:0:0:0,-8.72987,-103.52 0|1:30:25,5:25:990:5:203:-9.62216,0,-80.374 0|1:12:11,1:11:425:1:41:-0.482207,0,-34.9887 0|0:15:15,0:15:586:0:0:0,-4.51545,-53.0817 dDocent_Contig_283 61 . G C 47.9669 . AB=0.173913;ABP=24.253;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=69;DPB=69;DPRA=1.5;EPP=11.6962;EPPR=144.156;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=140;QR=2540;RO=65;RPL=4;RPP=11.6962;RPPR=144.156;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=65;SRP=144.156;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:9:9,0:9:359:0:0:0,-2.70927,-32.6732 0/1:23:19,4:19:714:4:140:-6.01853,0,-57.6513 0/0:20:20,0:20:797:0:0:0,-6.0206,-72.05 0/0:17:17,0:17:670:0:0:0,-5.11751,-60.6259 dDocent_Contig_284 20 . T C 54.1336 . AB=0.166667;ABP=26.1727;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=82;DPB=82;DPRA=1.24138;EPP=11.6962;EPPR=172.385;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=150;QR=3108;RO=78;RPL=0;RPP=11.6962;RPPR=172.385;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=78;SRP=172.385;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:26:26,0:26:1034:0:0:0,-7.82678,-93.3508 0/1:24:20,4:20:802:4:150:-6.635,0,-65.2723 0/0:28:28,0:28:1109:0:0:0,-8.42884,-100.094 0/0:4:4,0:4:163:0:0:0,-1.20412,-15.0584 dDocent_Contig_285 98 . N C 619.791 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=20;CIGAR=1X;DP=20;DPB=20;DPRA=0;EPP=46.4397;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=668;QR=0;RO=0;RPL=20;RPP=46.4397;RPPR=0;RPR=0;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1:0,1:0:0:1:27:-2.69978,-0.30103,0 1/1:14:0,14:0:0:14:476:-43.1658,-4.21442,0 1/1:2:0,2:0:0:2:68:-6.45788,-0.60206,0 1/1:3:0,3:0:0:3:97:-9.05057,-0.90309,0 dDocent_Contig_288 18 . A T 638.32 . AB=0.261261;ABP=57.9622;AC=3;AF=0.375;AN=8;AO=32;CIGAR=1X;DP=167;DPB=167;DPRA=0;EPP=72.4974;EPPR=293.988;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1224;QR=5280;RO=134;RPL=0;RPP=72.4974;RPPR=293.988;RPR=32;RUN=1;SAF=32;SAP=72.4974;SAR=0;SRF=134;SRP=293.988;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:49:40,9:40:1567:9:344:-16.5667,0,-126.522 0/1:32:18,14:18:722:14:535:-38.8555,0,-55.6729 0/0:56:53,3:53:2105:3:113:0,-6.31814,-179.1 0/1:30:23,6:23:886:6:232:-12.3763,0,-71.1983 dDocent_Contig_290 23 . C T 111.658 . AB=0.152174;ABP=51.3492;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=183;DPB=183;DPRA=1.0073;EPP=18.2106;EPPR=385.189;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.9545;NS=4;NUMALT=1;ODDS=0;PAIRED=0.142857;PAIREDR=0.982955;PAO=0;PQA=0;PQR=0;PRO=0;QA=284;QR=7133;RO=176;RPL=0;RPP=18.2106;RPPR=385.189;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=176;SRP=385.189;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:46:39,7:39:1578:7:284:-12.0866,0,-128.401 0/0:36:36,0:36:1458:0:0:0,-10.8371,-131.465 0/0:52:52,0:52:2121:0:0:0,-15.6536,-191.041 0/0:49:49,0:49:1976:0:0:0,-14.7505,-178.029 dDocent_Contig_291 9 . T G 178.303 . AB=0.115556;ABP=291.855;AC=3;AF=0.375;AN=8;AO=32;CIGAR=1X;DP=311;DPB=311;DPRA=0;EPP=72.4974;EPPR=600.196;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.4516;NS=4;NUMALT=1;ODDS=0;PAIRED=0.65625;PAIREDR=0.939068;PAO=0;PQA=0;PQR=0;PRO=0;QA=1212;QR=10685;RO=279;RPL=0;RPP=72.4974;RPPR=608.851;RPR=32;RUN=1;SAF=32;SAP=72.4974;SAR=0;SRF=278;SRP=600.196;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:99:90,9:90:3440:9:345:-1.60623,0,-279.931 0/0:86:80,6:80:3050:6:230:0,-4.82225,-252.728 0/1:70:60,10:60:2315:10:371:-12.6663,0,-187.487 0/1:56:49,7:49:1880:7:266:-7.44285,0,-152.577 dDocent_Contig_292 1 . N G 75.9504 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=4.89285;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=80;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:80:-7.59179,-0.60206,0 dDocent_Contig_293 12 . T A 932.898 . AB=0.0397351;ABP=280.858;AC=0;AF=0;AN=8;AO=6;CIGAR=1X3M1X1M;DP=172;DPB=172;DPRA=0;EPP=16.0391;EPPR=261.416;GTI=0;LEN=1;MEANALT=2.33333;MQM=56.5;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0.941176;PAO=0;PQA=0;PQR=0;PRO=0;QA=241;QR=4731;RO=119;RPL=0;RPP=16.0391;RPPR=261.416;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=119;SRP=261.416;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:60:46,2,12:46:1819:2,12:80,476:-21.5887,-28.8406,-177.958,0,-143.098,-146.076 0|0:55:38,3,14:38:1518:3,14:121,550:-29.3755,-30.8514,-155.01,0,-115.073,-120.815 0|0:36:22,1,12:22:878:1,12:40,475:-28.6654,-32.0166,-104.049,0,-69.0387,-68.6953 0|0:21:13,0,8:13:516:0,8:0,314:-19.1497,-23.0631,-65.5707,0,-42.8747,-40.4664 dDocent_Contig_294 21 . A T 12128 . AB=0.734615;ABP=251.627;AC=4;AF=0.5;AN=8;AO=382;CIGAR=1X;DP=520;DPB=520;DPRA=0;EPP=832.513;EPPR=302.673;GTI=0;LEN=1;MEANALT=1;MQM=59.9869;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.994764;PAIREDR=0.978261;PAO=0;PQA=0;PQR=0;PRO=0;QA=15276;QR=5519;RO=138;RPL=0;RPP=832.513;RPPR=302.673;RPR=382;RUN=1;SAF=382;SAP=832.513;SAR=0;SRF=138;SRP=302.673;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:170:47,123:47:1900:123:4927:-392.132,0,-120.021 0/1:162:54,108:54:2147:108:4285:-336.838,0,-144.635 0/1:116:24,92:24:955:92:3696:-297.724,0,-51.3296 0/1:72:13,59:13:517:59:2368:-191.594,0,-25.202 dDocent_Contig_295 8 . A T 3406.14 . AB=0.0979021;ABP=203.834;AC=4;AF=0.5;AN=8;AO=14;CIGAR=1X3M;DP=219;DPB=219;DPRA=0;EPP=33.4109;EPPR=196.271;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=540;QR=3464;RO=89;RPL=0;RPP=33.4109;RPPR=196.271;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=89;SRP=196.271;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:59:22,26,11:22:840:26,11:1017,424:-76.9991,0,-61.0849,-48.8059,-34.0929,-114.404 0|1:58:26,31,1:26:1023:31,1:1211,39:-91.732,0,-74.8267,-96.3529,-80.9529,-180.208 0|1:76:28,48,0:28:1093:48,0:1869,0:-145.567,0,-75.7899,-153.996,-90.2394,-243.846 0|1:26:13,11,2:13:508:11,2:434,77:-31.8048,0,-38.4588,-29.3973,-35.4485,-70.5584 dDocent_Contig_296 127 . A C 3038.62 . AB=0.3;ABP=201.049;AC=4;AF=0.5;AN=8;AO=171;CIGAR=1X3M2X;DP=570;DPB=570;DPRA=0;EPP=374.332;EPPR=856.399;GTI=0;LEN=1;MEANALT=2.5;MQM=59.8421;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5320;QR=12897;RO=393;RPL=0;RPP=374.332;RPPR=856.399;RPR=171;RUN=1;SAF=0;SAP=374.332;SAR=171;SRF=0;SRP=856.399;SRR=393;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:154:124,28:124:4114:28:869:-32.5295,0,-324.509 0|1:184:120,63:120:3896:63:1967:-122.151,0,-295.709 0|1:147:84,61:84:2756:61:1914:-128.679,0,-204.439 0|1:85:65,19:65:2131:19:570:-25.9922,0,-166.464 dDocent_Contig_297 16 . T C 4190.48 . AB=0.793939;ABP=126.837;AC=4;AF=0.5;AN=8;AO=131;CIGAR=1X;DP=165;DPB=165;DPRA=0;EPP=287.473;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.832061;PAIREDR=0.882353;PAO=0;PQA=0;PQR=0;PRO=0;QA=5256;QR=1340;RO=34;RPL=0;RPP=287.473;RPPR=76.8404;RPR=131;RUN=1;SAF=131;SAP=287.473;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:56:17,39:17:682:39:1562:-123.961,0,-44.8502 0/1:54:9,45:9:336:45:1812:-147.028,0,-14.3289 0/1:36:6,30:6:246:30:1191:-96.6297,0,-11.683 0/1:19:2,17:2:76:17:691:-56.7987,0,-1.49397 dDocent_Contig_298 14 . A T 71.3213 . AB=0.222222;ABP=15.074;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=77;DPB=77;DPRA=0.915254;EPP=11.6962;EPPR=161.528;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.5;PAIREDR=0.90411;PAO=0;PQA=0;PQR=0;PRO=0;QA=149;QR=2852;RO=73;RPL=0;RPP=11.6962;RPPR=161.528;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=73;SRP=161.528;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:28:28,0:28:1105:0:0:0,-8.42884,-99.7418 0/0:19:19,0:19:741:0:0:0,-5.71957,-67.0099 0/1:18:14,4:14:553:4:149:-8.35398,0,-44.6948 0/0:12:12,0:12:453:0:0:0,-3.61236,-41.1113 dDocent_Contig_299 98 . N A 62.7142 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=4.89285;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=66;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:66:-6.26818,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_300 128 . G C 401.163 . AB=0.311111;ABP=16.956;AC=4;AF=0.5;AN=8;AO=14;CIGAR=1X1M;DP=45;DPB=45;DPRA=0;EPP=33.4109;EPPR=13.5202;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=6.93889e-18;PAIRED=0;PAIREDR=0.48;PAO=0;PQA=0;PQR=0;PRO=0;QA=469;QR=850;RO=25;RPL=0;RPP=33.4109;RPPR=57.2971;RPR=14;RUN=1;SAF=0;SAP=33.4109;SAR=14;SRF=7;SRP=13.5202;SRR=18;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:15:10,0,5:10:339:0,5:0,158:-10.0168,-13.0271,-40.5319,0,-27.8284,-26.3233 0|1:11:4,6,1:4:132:6,1:209,35:-15.7911,0,-8.85035,-14.1473,-7.8048,-24.5114 0|1:8:5,0,3:5:169:0,3:0,101:-7.01553,-8.52068,-22.2216,0,-14.038,-13.1349 0|1:11:6,0,5:6:210:0,5:0,175:-12.7824,-14.5885,-31.675,0,-17.4363,-15.9311 dDocent_Contig_301 1 . N G 76.8898 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=4.89285;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:81:-7.68573,-0.60206,0 dDocent_Contig_302 15 . C T 112.046 . AB=0.148148;ABP=90.1105;AC=2;AF=0.25;AN=8;AO=17;CIGAR=2X;DP=160;DPB=160;DPRA=0;EPP=39.9253;EPPR=313.531;GTI=0;LEN=1;MEANALT=1;MQM=36;MQMR=59.7483;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.86014;PAO=0;PQA=0;PQR=0;PRO=0;QA=685;QR=5653;RO=143;RPL=0;RPP=39.9253;RPPR=313.531;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=143;SRP=313.531;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:47:44,3:44:1720:3:121:0,-4.45138,-145.314 0|1:58:51,7:51:2038:7:278:-4.56066,0,-166.128 0|0:32:30,2:30:1178:2:81:0,-3.04453,-99.7102 0|1:23:18,5:18:717:5:205:-9.08751,0,-57.9344 dDocent_Contig_303 7 . T C 1971.1 . AB=0.345455;ABP=48.6507;AC=2;AF=0.25;AN=8;AO=88;CIGAR=1X;DP=422;DPB=422;DPRA=0;EPP=194.1;EPPR=728.282;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3413;QR=12696;RO=334;RPL=0;RPP=194.1;RPPR=728.282;RPR=88;RUN=1;SAF=88;SAP=194.1;SAR=0;SRF=334;SRP=728.282;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:129:77,52:77:2933:52:2013:-142.572,0,-225.313 0/0:96:91,5:91:3435:5:194:0,-11.066,-291.456 0/0:106:99,7:99:3757:7:272:0,-7.06195,-313.389 0/1:91:67,24:67:2571:24:934:-56.9822,0,-204.187 dDocent_Contig_304 98 . N G 97.9779 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.586;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=105;QR=0;RO=0;RPL=3;RPP=9.52472;RPPR=0;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:105:-9.79616,-0.90309,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_305 30 . T G 62.8144 . AB=0.122807;ABP=73.4498;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=272;DPB=272;DPRA=0.795349;EPP=18.2106;EPPR=578.45;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=270;QR=10612;RO=265;RPL=0;RPP=18.2106;RPPR=578.45;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=265;SRP=578.45;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:124:124,0:124:5008:0:0:0,-37.3277,-450.579 0/1:57:50,7:50:1995:7:270:-7.50329,0,-162.577 0/0:47:47,0:47:1874:0:0:0,-14.1484,-168.86 0/0:44:44,0:44:1735:0:0:0,-13.2453,-156.37 dDocent_Contig_306 11 . G A 43001.1 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=1237;CIGAR=1X;DP=1283;DPB=1283;DPRA=0;EPP=2689.12;EPPR=100.727;GTI=0;LEN=1;MEANALT=1.25;MQM=59.962;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.999192;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=49650;QR=1805;RO=45;RPL=0;RPP=2689.12;RPPR=100.727;RPR=1237;RUN=1;SAF=1237;SAP=2689.12;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:426:19,407:19:761:407:16364:-1401.07,-59.4291,0 1/1:333:13,319:13:515:319:12736:-1098.59,-53.6606,0 1/1:304:1,303:1:41:303:12192:-1092.28,-87.4186,0 1/1:220:12,208:12:488:208:8358:-707.469,-21.9557,0 dDocent_Contig_307 184 . G A 544.335 . AB=0.323944;ABP=22.1254;AC=2;AF=0.25;AN=8;AO=23;CIGAR=1X;DP=135;DPB=135;DPRA=1.10938;EPP=52.9542;EPPR=244.044;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=863;QR=4458;RO=111;RPL=23;RPP=52.9542;RPPR=244.044;RPR=0;RUN=1;SAF=0;SAP=52.9542;SAR=23;SRF=0;SRP=244.044;SRR=111;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:44:44,0:44:1777:0:0:0,-13.2453,-160.136 0/0:20:20,0:20:804:0:0:0,-6.0206,-72.6704 0/1:57:37,19:37:1484:19:710:-46.9521,0,-116.536 0/1:14:10,4:10:393:4:153:-9.92501,0,-31.5069 dDocent_Contig_308 27 . C T 6412.5 . AB=0.616162;ABP=37.8197;AC=5;AF=0.625;AN=8;AO=209;CIGAR=1M11I3M1X3M1X3M1X;DP=323;DPB=505.769;DPRA=0;EPP=456.848;EPPR=235.358;GTI=0;LEN=1;MEANALT=2;MQM=53.0861;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=8177;QR=4194;RO=107;RPL=0;RPP=456.848;RPPR=235.358;RPR=209;RUN=1;SAF=209;SAP=456.848;SAR=0;SRF=107;SRP=235.358;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:153:70,81:70:2734:81:3156:-237.032,0,-200.402 0|1:117:29,83:29:1141:83:3249:-257.261,0,-68.8985 1|1:26:0,26:0:0:26:1015:-91.0433,-7.82678,0 0|1:27:8,19:8:319:19:757:-59.8806,0,-20.9498 dDocent_Contig_309 12 . C A 11764.7 . AB=0.301149;ABP=152.413;AC=3;AF=0.375;AN=8;AO=131;CIGAR=1X2M1X;DP=435;DPB=435;DPRA=0;EPP=287.473;EPPR=87.6977;GTI=0;LEN=1;MEANALT=2.75;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5194;QR=1523;RO=39;RPL=0;RPP=287.473;RPPR=87.6977;RPR=131;RUN=1;SAF=131;SAP=287.473;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:120:0,67,51:0:0:67,51:2666,2067:-389.948,-170.446,-150.277,-219.499,0,-204.147 0|0:114:27,19,68:27:1070:19,68:746,2706:-214.664,-161.44,-243.789,0,-26.7198,-67.6009 1|0:114:12,28,72:12:453:28,72:1099,2893:-288.057,-201.293,-229.979,-53.2734,0,-68.7122 1|0:87:0,17,70:0:0:17,70:683,2822:-289.288,-233.006,-227.888,-56.6841,0,-35.612 dDocent_Contig_310 12 . A T 128.464 . AB=0.140625;ABP=74.8046;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X;DP=216;DPB=216;DPRA=1.26316;EPP=22.5536;EPPR=452.505;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.995169;PAO=0;PQA=0;PQR=0;PRO=0;QA=363;QR=8219;RO=207;RPL=0;RPP=22.5536;RPPR=452.505;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=207;SRP=452.505;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:64:55,9:55:2160:9:363:-13.7673,0,-175.323 0/0:66:66,0:66:2613:0:0:0,-19.868,-235.312 0/0:54:54,0:54:2160:0:0:0,-16.2556,-194.577 0/0:32:32,0:32:1286:0:0:0,-9.63296,-116.004 dDocent_Contig_311 40 . G A 188.978 . AB=0.209302;ABP=34.5724;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X;DP=96;DPB=96;DPRA=2.43396;EPP=22.5536;EPPR=191.928;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.942529;PAO=0;PQA=0;PQR=0;PRO=0;QA=360;QR=3446;RO=87;RPL=0;RPP=22.5536;RPPR=191.928;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=87;SRP=191.928;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:43:34,9:34:1349:9:360:-19.8186,0,-108.72 0/0:25:25,0:25:1011:0:0:0,-7.52575,-91.284 0/0:18:18,0:18:717:0:0:0,-5.41854,-64.8552 0/0:10:10,0:10:369:0:0:0,-3.0103,-33.5454 dDocent_Contig_312 38 . T C 2905.15 . AB=0.40566;ABP=19.3988;AC=3;AF=0.375;AN=8;AO=86;CIGAR=3M1X;DP=212;DPB=232.5;DPRA=0;EPP=189.757;EPPR=187.585;GTI=0;LEN=1;MEANALT=1.75;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3427;QR=3383;RO=85;RPL=0;RPP=189.757;RPPR=187.585;RPR=86;RUN=1;SAF=86;SAP=189.757;SAR=0;SRF=85;SRP=187.585;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:67:22,30,15:22:859:30,15:1088,604:-82.1522,0,-61.5687,-38.9815,-20.8146,-105.085 0|1:74:34,0,40:34:1363:0,40:0,1577:-119.884,-130.119,-242.416,0,-112.695,-100.653 0|1:48:18,9,21:18:719:9,21:343,846:-64.3251,-41.6188,-98.1284,0,-31.1073,-52.9109 0|1:23:11,2,10:11:442:2,10:79,400:-29.6423,-26.4539,-62.2761,0,-29.9295,-33.4187 dDocent_Contig_313 62 . C T 102.394 . AB=0.125;ABP=100.727;AC=2;AF=0.25;AN=8;AO=11;CIGAR=1X;DP=179;DPB=179;DPRA=3.92857;EPP=26.8965;EPPR=367.818;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=440;QR=6664;RO=168;RPL=11;RPP=26.8965;RPPR=367.818;RPR=0;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=168;SRP=367.818;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:85:84,1:84:3355:1:40:0,-21.5919,-298.003 0/1:69:61,8:61:2390:8:318:-8.21465,0,-194.48 0/0:14:14,0:14:558:0:0:0,-4.21442,-50.5614 0/1:11:9,2:9:361:2:82:-4.46835,0,-29.5417 dDocent_Contig_314 18 . C A 46590 . AB=0.708049;ABP=278.592;AC=6;AF=0.75;AN=8;AO=1380;CIGAR=1X;DP=1621;DPB=1621;DPRA=0;EPP=2999.64;EPPR=524.164;GTI=0;LEN=1;MEANALT=1.25;MQM=59.7464;MQMR=59.9917;NS=4;NUMALT=1;ODDS=0;PAIRED=0.796377;PAIREDR=0.845833;PAO=0;PQA=0;PQR=0;PRO=0;QA=55412;QR=9656;RO=240;RPL=0;RPP=2999.64;RPPR=524.164;RPR=1380;RUN=1;SAF=1380;SAP=2999.64;SAR=0;SRF=240;SRP=524.164;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:482:187,295:187:7527:295:11819:-917.728,0,-531.904 1/1:548:0,548:0:0:548:22057:-1979.02,-164.964,0 1/1:340:26,313:26:1043:313:12560:-1034.3,-8.19077,0 0/1:251:27,224:27:1086:224:8976:-730.406,0,-22.4649 dDocent_Contig_315 31 . G A 5065.39 . AB=0.685106;ABP=72.9502;AC=4;AF=0.5;AN=8;AO=161;CIGAR=1X;DP=235;DPB=235;DPRA=0;EPP=352.617;EPPR=163.699;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6465;QR=2926;RO=74;RPL=0;RPP=352.617;RPPR=163.699;RPR=161;RUN=1;SAF=161;SAP=352.617;SAR=0;SRF=74;SRP=163.699;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:98:19,79:19:760:79:3171:-255.955,0,-39.2222 0/1:62:24,38:24:947:38:1523:-118.649,0,-66.8636 0/1:48:21,27:21:813:27:1093:-84.2046,0,-59.0194 0/1:27:10,17:10:406:17:678:-53.219,0,-28.7728 dDocent_Contig_317 222 . A G 93.5227 . AB=0;ABP=0;AC=2;AF=0.25;AN=8;AO=3;CIGAR=2M1X3M12I4M;DP=89;DPB=95.1;DPRA=0.216867;EPP=9.52472;EPPR=83.3548;GTI=0;LEN=1;MEANALT=2;MQM=37;MQMR=51.9459;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=103;QR=1285;RO=37;RPL=3;RPP=9.52472;RPPR=83.3548;RPR=0;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=83.3548;SRR=37;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:6:0,3:0:0:3:103:-8.7498,-0.90309,0 0|0:34:15,0:15:516:0:0:0,-4.51545,-46.2927 0|0:22:11,0:11:380:0:0:0,-3.31133,-34.0225 0|0:27:11,0:11:389:0:0:0,-3.31133,-34.9324 dDocent_Contig_319 44 . A G 5964.56 . AB=0.430612;ABP=23.5019;AC=4;AF=0.5;AN=8;AO=211;CIGAR=1X;DP=490;DPB=490;DPRA=0;EPP=461.191;EPPR=608.851;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=2.77556e-17;PAIRED=0.971564;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=8319;QR=11074;RO=279;RPL=0;RPP=461.191;RPPR=608.851;RPR=211;RUN=1;SAF=211;SAP=461.191;SAR=0;SRF=279;SRP=608.851;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:184:111,73:111:4393:73:2862:-202.297,0,-339.946 0/1:167:105,62:105:4160:62:2440:-169.48,0,-324.112 0/1:65:28,37:28:1127:37:1445:-110.729,0,-82.1451 0/1:74:35,39:35:1394:39:1572:-119.439,0,-103.444 dDocent_Contig_320 60 . A T 90.8825 . AB=0.162162;ABP=39.6906;AC=2;AF=0.25;AN=8;AO=6;CIGAR=1X;DP=87;DPB=87;DPRA=0.74;EPP=16.0391;EPPR=178.9;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.5;PAIREDR=0.851852;PAO=0;PQA=0;PQR=0;PRO=0;QA=243;QR=3200;RO=81;RPL=6;RPP=16.0391;RPPR=178.9;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=81;SRP=178.9;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:25:25,0:25:1007:0:0:0,-7.52575,-90.9242 0/0:25:25,0:25:971:0:0:0,-7.52575,-87.6882 0/1:19:15,4:15:584:4:161:-9.15533,0,-47.1739 0/1:18:16,2:16:638:2:82:-2.36114,0,-52.336 dDocent_Contig_321 13 . T C 100.243 . AB=0.208333;ABP=20.744;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=145;DPB=145;DPRA=0.595041;EPP=13.8677;EPPR=307.016;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.992857;PAO=0;PQA=0;PQR=0;PRO=0;QA=201;QR=5443;RO=140;RPL=0;RPP=13.8677;RPPR=307.016;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=140;SRP=307.016;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:37:37,0:37:1450:0:0:0,-11.1381,-130.768 0/0:54:54,0:54:2085:0:0:0,-16.2556,-187.867 0/0:30:30,0:30:1157:0:0:0,-9.0309,-104.423 0/1:24:19,5:19:751:5:201:-11.2462,0,-60.6895 dDocent_Contig_322 161 . T C 106.798 . AB=0.25;ABP=13.8677;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=79;DPB=79;DPRA=1.01695;EPP=6.91895;EPPR=163.699;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=195;QR=2874;RO=74;RPL=4;RPP=6.91895;RPPR=163.699;RPR=1;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=163.699;SRR=74;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:19:19,0:19:734:0:0:0,-5.71957,-66.3827 0/1:20:15,5:15:589:5:195:-11.9017,0,-47.328 0/0:24:24,0:24:932:0:0:0,-7.22472,-84.1848 0/0:16:16,0:16:619:0:0:0,-4.81648,-56.0464 dDocent_Contig_323 10 . A G 30.3683 . AB=0.0895522;ABP=297.131;AC=1;AF=0.125;AN=8;AO=32;CIGAR=1X;DP=730;DPB=730;DPRA=0;EPP=72.4974;EPPR=1518.7;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1276;QR=27895;RO=698;RPL=0;RPP=72.4974;RPPR=1518.7;RPR=32;RUN=1;SAF=32;SAP=72.4974;SAR=0;SRF=698;SRP=1518.7;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:215:211,4:211:8453:4:152:0,-50.6759,-746.233 0/0:217:211,6:211:8415:6:245:0,-42.894,-734.453 0/1:201:183,18:183:7333:18:716:-4.25828,0,-599.097 0/0:97:93,4:93:3694:4:163:0,-14.1415,-317.425 dDocent_Contig_325 19 . C G 457.174 . AB=0.13308;ABP=310.558;AC=1;AF=0.125;AN=8;AO=37;CIGAR=1X;DP=814;DPB=814;DPRA=1.18231;EPP=83.3548;EPPR=1690.24;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1474;QR=31127;RO=777;RPL=0;RPP=83.3548;RPPR=1690.24;RPR=37;RUN=1;SAF=37;SAP=83.3548;SAR=0;SRF=777;SRP=1690.24;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:263:228,35:228:9113:35:1395:-46.6382,0,-740.429 0/0:212:212,0:212:8550:0:0:0,-63.8184,-768.974 0/0:178:176,2:176:7021:2:79:0,-46.0861,-624.063 0/0:161:161,0:161:6443:0:0:0,-48.4658,-579.587 dDocent_Contig_326 28 . C T 9005.41 . AB=0.0324675;ABP=295.398;AC=0;AF=0;AN=8;AO=7;CIGAR=1X3M1X;DP=328;DPB=328;DPRA=0;EPP=18.2106;EPPR=61.6401;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=274;QR=1028;RO=27;RPL=0;RPP=18.2106;RPPR=61.6401;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:61:7,10,0,44:7:269:10,0,44:400,0,1722:-150.346,-119.501,-138.572,-152.453,-141.582,-174.534,-10.8841,0,-32.9598,-19.7145 0|0:113:0,4,2,107:0:0:4,2,107:162,78,4215:-378.947,-365.588,-364.384,-372.535,-359.177,-371.933,-32.2102,-18.842,-25.8034,0 0|0:118:7,14,1,96:7:251:14,1,96:560,38,3767:-333.349,-289.325,-305.577,-332.34,-306.675,-352.505,-25.6992,0,-43.0387,-17.256 0|0:36:13,5,4,14:13:508:5,4,14:188,158,556:-41.8654,-30.3842,-70.6414,-32.7764,-59.1447,-73.3368,0,-26.3731,-28.7653,-37.5542 dDocent_Contig_327 15 . A T 109.484 . AB=0.039823;ABP=418.703;AC=1;AF=0.125;AN=8;AO=9;CIGAR=2X;DP=326;DPB=326;DPRA=0.753333;EPP=22.5536;EPPR=641.423;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=1.38778e-17;PAIRED=1;PAIREDR=0.986395;PAO=0;PQA=0;PQR=0;PRO=0;QA=364;QR=11797;RO=294;RPL=0;RPP=22.5536;RPPR=641.423;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=294;SRP=641.423;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:100:100,0,0:100:3976:0,0:0,0:0,-30.103,-357.834,-30.103,-357.834,-357.834 0|0:126:113,2,11:113:4538:2,11:82,443:-2.48927,-29.7364,-403.054,0,-367.145,-370.602 0|0:69:61,2,6:61:2468:2,6:81,244:-1.76468,-13.4488,-216.334,0,-196.809,-201.682 0|1:31:20,5,5:20:815:5,5:201,198:-10.546,0,-65.7397,-0.274126,-50.952,-66.01 dDocent_Contig_328 14 . G A 222.566 . AB=0.380952;ABP=5.59539;AC=1;AF=0.125;AN=8;AO=11;CIGAR=1X;DP=119;DPB=119;DPRA=1.33333;EPP=26.8965;EPPR=237.529;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=442;QR=4330;RO=108;RPL=0;RPP=26.8965;RPPR=237.529;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=108;SRP=237.529;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:47:44,3:44:1773:3:115:0,-3.42602,-149.06 0/1:21:13,8:13:530:8:327:-23.4785,0,-41.7248 0/0:38:38,0:38:1526:0:0:0,-11.4391,-137.576 0/0:13:13,0:13:501:0:0:0,-3.91339,-45.4297 dDocent_Contig_329 14 . G A 5279.58 . AB=0.240799;ABP=557.978;AC=4;AF=0.5;AN=8;AO=229;CIGAR=1X;DP=951;DPB=951;DPRA=0;EPP=500.277;EPPR=1570.81;GTI=0;LEN=1;MEANALT=1;MQM=59.3755;MQMR=59.6454;NS=4;NUMALT=1;ODDS=0;PAIRED=0.991266;PAIREDR=0.777008;PAO=0;PQA=0;PQR=0;PRO=0;QA=9144;QR=28878;RO=722;RPL=0;RPP=500.277;RPPR=1570.81;RPR=229;RUN=1;SAF=229;SAP=500.277;SAR=0;SRF=722;SRP=1570.81;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:383:278,105:278:11114:105:4156:-258.679,0,-877.49 0/1:272:209,63:209:8343:63:2544:-143.394,0,-668.517 0/1:200:156,44:156:6244:44:1757:-98.1279,0,-501.49 0/1:96:79,17:79:3177:17:687:-33.2465,0,-256.14 dDocent_Contig_330 80 . C T 4163.81 . AB=0.293663;ABP=242.272;AC=4;AF=0.5;AN=8;AO=190;CIGAR=1X;DP=647;DPB=647;DPRA=0;EPP=415.59;EPPR=995.373;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6839;QR=16500;RO=457;RPL=190;RPP=415.59;RPPR=995.373;RPR=0;RUN=1;SAF=190;SAP=415.59;SAR=0;SRF=457;SRP=995.373;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:167:130,37:130:4748:37:1339:-70.538,0,-377.176 0/1:227:187,40:187:6781:40:1441:-61.6505,0,-541.989 0/1:149:71,78:71:2539:78:2813:-208.549,0,-183.897 0/1:104:69,35:69:2432:35:1246:-81.1335,0,-187.812 dDocent_Contig_332 74 . T A 4162.35 . AB=0.655914;ABP=42.2836;AC=5;AF=0.625;AN=8;AO=137;CIGAR=1X;DP=201;DPB=201;DPRA=0;EPP=300.502;EPPR=141.985;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5279;QR=2520;RO=64;RPL=137;RPP=300.502;RPPR=141.985;RPR=0;RUN=1;SAF=137;SAP=300.502;SAR=0;SRF=64;SRP=141.985;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:76:30,46:30:1171:46:1773:-136.919,0,-82.7998 0/1:88:29,59:29:1149:59:2266:-177.641,0,-77.2075 0/1:22:5,17:5:200:17:646:-51.8414,0,-11.7564 1/1:15:0,15:0:0:15:594:-53.7999,-4.51545,0 dDocent_Contig_333 19 . T C 726.975 . AB=0.159091;ABP=313.926;AC=3;AF=0.375;AN=8;AO=51;CIGAR=1X;DP=484;DPB=484;DPRA=0;EPP=105.24;EPPR=941.086;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=0.921569;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1937;QR=16106;RO=432;RPL=0;RPP=113.755;RPPR=941.086;RPR=51;RUN=1;SAF=50;SAP=105.24;SAR=1;SRF=432;SRP=941.086;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:176:174,2:174:6483:2:68:0,-46.5243,-576.965 0/1:131:111,20:111:4121:20:731:-26.6566,0,-331.558 0/1:130:115,14:115:4291:14:541:-10.0855,0,-347.355 0/1:47:32,15:32:1211:15:597:-39.922,0,-95.137 dDocent_Contig_334 45 . T A 1006.07 . AB=0.185185;ABP=26.2531;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X2M2X;DP=72;DPB=72;DPRA=0.626667;EPP=18.2106;EPPR=29.068;GTI=0;LEN=1;MEANALT=2;MQM=24.1429;MQMR=11;NS=4;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=255;QR=473;RO=12;RPL=0;RPP=18.2106;RPPR=29.068;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=29.068;SRR=12;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:25:2,0,22:2:80:0,22:0,865:-44.0273,-44.6293,-45.997,-5.25233,-6.62266,0 0|0:8:1,1,6:1:40:1,6:36,232:-11.6167,-10.2559,-10.6259,-1.17185,-0.0881917,0 1|0:27:9,5,13:9:353:5,13:183,515:-21.3911,-14.0254,-18.6766,-4.0123,0,-6.1998 0|0:12:0,1,11:0:0:1,11:36,433:-24.4902,-23.3622,-23.0612,-3.31133,-2.01657,0 dDocent_Contig_335 30 . G A 7452.89 . AB=0.846154;ABP=165.37;AC=6;AF=0.75;AN=8;AO=228;CIGAR=1M1D2M1X;DP=259;DPB=213.4;DPRA=0;EPP=498.106;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=9113;QR=1221;RO=31;RPL=0;RPP=498.106;RPPR=70.3259;RPR=228;RUN=1;SAF=228;SAP=498.106;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:138:19,119:19:737:119:4767:-387.4,0,-25.114 1|1:76:5,71:5:203:71:2836:-236.7,-4.22543,0 1|1:27:2,25:2:79:25:987:-81.6331,-0.630179,0 0|1:18:5,13:5:202:13:523:-41.9987,0,-13.1433 dDocent_Contig_336 209 . N G 45.5915 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=4.89285;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=48;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:48:-4.55589,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_337 23 . C T 2061.06 . AB=0.690722;ABP=33.6572;AC=4;AF=0.5;AN=8;AO=67;CIGAR=1X;DP=97;DPB=97;DPRA=0;EPP=148.499;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.985075;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2661;QR=1222;RO=30;RPL=0;RPP=148.499;RPPR=68.1545;RPR=67;RUN=1;SAF=67;SAP=148.499;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:11,10:11:450:10:393:-29.4021,0,-34.5341 0/1:34:9,25:9:366:25:1011:-81.0491,0,-23.0699 0/1:25:7,18:7:284:18:698:-55.6111,0,-18.408 0/1:17:3,14:3:122:14:559:-45.5335,0,-6.25498 dDocent_Contig_338 82 . G A 110.954 . AB=0.184211;ABP=35.9253;AC=1;AF=0.125;AN=8;AO=11;CIGAR=1X;DP=201;DPB=201;DPRA=1.23333;EPP=26.8965;EPPR=415.59;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=408;QR=6898;RO=190;RPL=11;RPP=26.8965;RPPR=415.59;RPR=0;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=190;SRP=415.59;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:50:50,0:50:1804:0:0:0,-15.0515,-162.634 0/0:73:69,4:69:2545:4:148:0,-8.29322,-215.602 0/1:38:31,7:31:1138:7:260:-12.3172,0,-91.2902 0/0:40:40,0:40:1411:0:0:0,-12.0412,-127.276 dDocent_Contig_339 38 . A G 13556.1 . AB=0.853968;ABP=345.82;AC=5;AF=0.625;AN=8;AO=415;CIGAR=1X;DP=464;DPB=464;DPRA=0;EPP=904.171;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=16287;QR=1934;RO=49;RPL=0;RPP=904.171;RPPR=109.412;RPR=415;RUN=1;SAF=415;SAP=904.171;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:166:21,145:21:836:145:5672:-460.328,0,-25.5796 1/1:149:3,146:3:122:146:5762:-507.027,-33.481,0 0/1:70:11,59:11:433:59:2354:-190.946,0,-18.2518 0/1:79:14,65:14:543:65:2499:-201.271,0,-25.4259 dDocent_Contig_340 140 . A G 74.8047 . AB=0.210526;ABP=44.4969;AC=2;AF=0.25;AN=8;AO=12;CIGAR=1X;DP=94;DPB=94;DPRA=1.54054;EPP=3.0103;EPPR=161.957;GTI=0;LEN=1;MEANALT=1.5;MQM=29.6667;MQMR=50.8025;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.666667;PAO=0;PQA=0;PQR=0;PRO=0;QA=378;QR=2711;RO=81;RPL=0;RPP=29.068;RPPR=178.9;RPR=12;RUN=1;SAF=6;SAP=3.0103;SAR=6;SRF=2;SRP=161.957;SRR=79;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:24:24,0:24:826:0:0:0,-7.22472,-73.8909 0/1:42:34,7:34:1118:7:261:-5.26245,0,-83.2299 0/0:13:13,0:13:440:0:0:0,-3.91339,-35.9972 0/1:15:10,5:10:327:5:117:-4.66161,0,-25.1907 dDocent_Contig_341 18 . G C 3856.85 . AB=0.618644;ABP=17.4377;AC=5;AF=0.625;AN=8;AO=119;CIGAR=1X;DP=165;DPB=165;DPRA=0;EPP=261.416;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4752;QR=1794;RO=46;RPL=0;RPP=261.416;RPPR=102.898;RPR=119;RUN=1;SAF=119;SAP=261.416;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:47:1,46:1:36:46:1820:-160.409,-10.5501,0 0/1:46:18,28:18:714:28:1122:-87.4138,0,-50.7397 0/1:38:7,31:7:257:31:1258:-102.044,0,-12.0346 0/1:34:20,14:20:787:14:552:-39.7851,0,-60.9127 dDocent_Contig_342 121 . C A 2896.45 . AB=0.487179;ABP=3.34437;AC=4;AF=0.5;AN=8;AO=114;CIGAR=1X;DP=234;DPB=234;DPRA=0;EPP=250.558;EPPR=263.587;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4048;QR=4172;RO=120;RPL=0;RPP=250.558;RPPR=263.587;RPR=114;RUN=1;SAF=0;SAP=250.558;SAR=114;SRF=0;SRP=263.587;SRR=120;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:87:46,41:46:1598:41:1461:-105.596,0,-117.923 0/1:83:32,51:32:1115:51:1804:-137.654,0,-75.6746 0/1:40:32,8:32:1110:8:286:-14.0443,0,-88.1685 0/1:24:10,14:10:349:14:497:-37.8401,0,-24.5221 dDocent_Contig_344 20 . A T 5224.32 . AB=0.677419;ABP=79.292;AC=4;AF=0.5;AN=8;AO=189;CIGAR=1X1M1X2M2X;DP=279;DPB=279;DPRA=0;EPP=413.419;EPPR=198.443;GTI=0;LEN=1;MEANALT=1;MQM=41.8307;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.994709;PAIREDR=0.966667;PAO=0;PQA=0;PQR=0;PRO=0;QA=7066;QR=3484;RO=90;RPL=0;RPP=413.419;RPPR=198.443;RPR=189;RUN=1;SAF=189;SAP=413.419;SAR=0;SRF=90;SRP=198.443;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:82:30,52:30:1173:52:1942:-144.204,0,-81.1783 0|1:82:29,53:29:1130:53:1972:-144.331,0,-77.312 0|1:65:14,51:14:546:51:1912:-146.574,0,-29.9149 0|1:50:17,33:17:635:33:1240:-92.8129,0,-42.4248 dDocent_Contig_345 72 . C A 403.747 . AB=0.233333;ABP=77.1299;AC=1;AF=0.125;AN=8;AO=37;CIGAR=1X;DP=430;DPB=430;DPRA=1.11823;EPP=83.3548;EPPR=852.056;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.945946;PAIREDR=0.971867;PAO=0;PQA=0;PQR=0;PRO=0;QA=1140;QR=11867;RO=391;RPL=37;RPP=83.3548;RPPR=852.056;RPR=0;RUN=1;SAF=37;SAP=83.3548;SAR=0;SRF=391;SRP=852.056;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:120:92,28:92:2758:28:857:-41.2956,0,-212.347 0/0:113:112,0:112:3442:0:0:0,-33.7154,-309.95 0/0:107:98,9:98:2973:9:283:0,-6.43112,-242.04 0/0:90:89,0:89:2694:0:0:0,-26.7917,-242.444 dDocent_Contig_346 62 . G A 194.206 . AB=0.148936;ABP=103.637;AC=1;AF=0.125;AN=8;AO=14;CIGAR=1X;DP=234;DPB=234;DPRA=2.01429;EPP=33.4109;EPPR=480.734;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=540;QR=8547;RO=220;RPL=14;RPP=33.4109;RPPR=480.734;RPR=0;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=220;SRP=480.734;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:81:81,0:81:3157:0:0:0,-24.3834,-284.216 0/1:94:80,14:80:3134:14:540:-20.6425,0,-253.845 0/0:27:27,0:27:1002:0:0:0,-8.12781,-90.4677 0/0:32:32,0:32:1254:0:0:0,-9.63296,-113.133 dDocent_Contig_347 12 . G A 12101.8 . AB=0.767726;ABP=257.646;AC=5;AF=0.625;AN=8;AO=371;CIGAR=1X;DP=468;DPB=468;DPRA=0;EPP=808.627;EPPR=211.472;GTI=0;LEN=1;MEANALT=1.25;MQM=59.3639;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.90566;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=14981;QR=3841;RO=96;RPL=0;RPP=808.627;RPPR=211.472;RPR=371;RUN=1;SAF=371;SAP=808.627;SAR=0;SRF=96;SRP=211.472;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:170:32,138:32:1278:138:5581:-449.967,0,-64.1105 0/1:158:43,114:43:1708:114:4606:-364.98,0,-106.278 1/1:59:2,57:2:82:57:2303:-199.44,-9.98109,0 0/1:81:19,62:19:773:62:2491:-199.756,0,-45.5058 dDocent_Contig_353 98 . N C 887.798 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=30;CIGAR=2X;DP=30;DPB=138.5;DPRA=0;EPP=68.1545;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=4;NUMALT=1;ODDS=1.11022e-16;PAIRED=0.966667;PAIREDR=0;PAO=217;PQA=7081;PQR=0;PRO=0;QA=979;QR=0;RO=0;RPL=30;RPP=68.1545;RPPR=0;RPR=0;RUN=1;SAF=30;SAP=68.1545;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:10:0,10:0:0:10:344:-30.9512,-3.0103,0 1|1:4:0,4:0:0:4:116:-10.4345,-1.20412,0 1|1:5:0,5:0:0:5:146:-13.1333,-1.50515,0 1|1:11:0,11:0:0:11:373:-33.5616,-3.31133,0 dDocent_Contig_368 14 . C T 3280.78 . AB=0.649123;ABP=25.0298;AC=5;AF=0.625;AN=8;AO=101;CIGAR=1X3M;DP=141;DPB=141;DPRA=0;EPP=222.329;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4032;QR=1241;RO=31;RPL=0;RPP=222.329;RPPR=70.3259;RPR=101;RUN=1;SAF=101;SAP=222.329;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:57:18,9,30:18:721:9,30:361,1214:-94.6809,-70.3563,-127.043,0,-29.6528,-50.3661 0|1:43:9,0,34:9:363:0,34:0,1350:-108.816,-111.525,-141.448,0,-30.325,-20.09 1|1:27:0,0,27:0:0:0,27:0,1073:-96.856,-96.856,-96.856,-8.12781,-8.12781,0 0|1:14:4,0,10:4:157:0,10:0,395:-31.6918,-32.8959,-45.8069,0,-13.3038,-10.2935 dDocent_Contig_369 25 . A G 48.5693 . AB=0.2;ABP=14.7363;AC=2;AF=0.25;AN=8;AO=3;CIGAR=1X;DP=68;DPB=68;DPRA=0.283019;EPP=9.52472;EPPR=144.156;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=2563;RO=65;RPL=0;RPP=9.52472;RPPR=144.156;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=65;SRP=144.156;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:27:27,0:27:1061:0:0:0,-8.12781,-95.77 0/0:26:26,0:26:1012:0:0:0,-7.82678,-91.3642 0/1:7:6,1:6:245:1:41:-1.98736,0,-20.3223 0/1:8:6,2:6:245:2:81:-5.27749,0,-20.0212 dDocent_Contig_370 46 . A G 6712.45 . AB=0.717949;ABP=51.2838;AC=6;AF=0.75;AN=8;AO=198;CIGAR=1X;DP=231;DPB=231;DPRA=0;EPP=424.32;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7868;QR=1323;RO=33;RPL=1;RPP=424.32;RPPR=74.6689;RPR=197;RUN=1;SAF=198;SAP=432.962;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:86:0,86:0:0:86:3433:-309.017,-25.8886,0 0/1:74:27,47:27:1079:47:1862:-145.515,0,-75.1235 0/1:43:6,37:6:244:37:1472:-119.783,0,-9.39453 1/1:28:0,28:0:0:28:1101:-99.3737,-8.42884,0 dDocent_Contig_371 9 . C T 14912.5 . AB=0.852113;ABP=155.931;AC=7;AF=0.875;AN=8;AO=460;CIGAR=1X;DP=498;DPB=498;DPRA=0;EPP=1001.89;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.991304;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=17683;QR=1440;RO=38;RPL=0;RPP=1001.89;RPPR=85.5263;RPR=460;RUN=1;SAF=460;SAP=1001.89;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:142:21,121:21:817:121:4603:-371.559,0,-31.1088 1/1:159:0,159:0:0:159:6145:-552.973,-47.8638,0 1/1:95:8,87:8:300:87:3369:-275.986,-1.24499,0 1/1:102:9,93:9:323:93:3566:-291.649,-1.295,0 dDocent_Contig_372 8 . T G 429.612 . AB=0.155;ABP=209.778;AC=2;AF=0.25;AN=8;AO=35;CIGAR=1X;DP=370;DPB=370;DPRA=0;EPP=79.0118;EPPR=730.454;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.997015;PAO=0;PQA=0;PQR=0;PRO=0;QA=1321;QR=12919;RO=335;RPL=0;RPP=79.0118;RPPR=730.454;RPR=35;RUN=1;SAF=35;SAP=79.0118;SAR=0;SRF=335;SRP=730.454;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:71:63,8:63:2440:8:300:-5.98077,0,-198.427 0/0:91:89,2:89:3409:2:77:0,-20.0846,-299.632 0/1:129:106,23:106:4086:23:866:-39.4241,0,-328.99 0/0:79:77,2:77:2984:2:78:0,-16.3779,-261.316 dDocent_Contig_373 8 . T G 30.7391 . AB=0.103448;ABP=82.2316;AC=2;AF=0.25;AN=8;AO=6;CIGAR=1X;DP=76;DPB=76;DPRA=3.22222;EPP=16.0391;EPPR=155.013;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=234;QR=2679;RO=70;RPL=0;RPP=16.0391;RPPR=155.013;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=70;SRP=155.013;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:20,3:20:757:3:117:-3.98669,0,-61.5312 0/0:11:11,0:11:426:0:0:0,-3.31133,-38.6947 0/1:35:32,3:32:1223:3:117:-0.374331,0,-99.8285 0/0:7:7,0:7:273:0:0:0,-2.10721,-24.938 dDocent_Contig_374 124 . A G 172.269 . AB=0.428571;ABP=6.42261;AC=3;AF=0.375;AN=8;AO=36;CIGAR=1X;DP=110;DPB=110;DPRA=0;EPP=81.1833;EPPR=163.699;GTI=0;LEN=1;MEANALT=1;MQM=14.8333;MQMR=55.4189;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.932432;PAO=0;PQA=0;PQR=0;PRO=0;QA=1291;QR=2609;RO=74;RPL=0;RPP=81.1833;RPPR=163.699;RPR=36;RUN=1;SAF=0;SAP=81.1833;SAR=36;SRF=0;SRP=163.699;SRR=74;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:12,12:12:434:12:434:-9.08912,0,-26.54 0/0:33:30,3:30:1068:3:106:0,-5.74491,-92.241 0/1:30:16,14:16:565:14:501:-9.96827,0,-42.1492 0/1:23:16,7:16:542:7:250:-2.10878,0,-35.3032 dDocent_Contig_375 121 . G T 304.255 . AB=0.319149;ABP=16.3625;AC=2;AF=0.25;AN=8;AO=16;CIGAR=2X;DP=75;DPB=75;DPRA=2.44444;EPP=37.7539;EPPR=128.956;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.75;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=550;QR=1986;RO=58;RPL=0;RPP=37.7539;RPPR=128.956;RPR=16;RUN=1;SAF=0;SAP=37.7539;SAR=16;SRF=0;SRP=128.956;SRR=58;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:31:21,10:21:727:10:346:-22.1425,0,-56.4195 0|0:19:17,1:17:565:1:35:0,-2.20484,-47.7238 0|1:16:11,5:11:380:5:169:-10.7267,0,-29.7163 0|0:9:9,0:9:314:0:0:0,-2.70927,-28.5979 dDocent_Contig_376 1 . N G 77.8292 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=4.89285;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:82:-7.77968,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_378 45 . C A 1808 . AB=0.324074;ABP=61.0771;AC=4;AF=0.5;AN=8;AO=70;CIGAR=1X;DP=216;DPB=216;DPRA=0;EPP=155.013;EPPR=320.045;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2778;QR=5787;RO=146;RPL=0;RPP=155.013;RPPR=320.045;RPR=70;RUN=1;SAF=70;SAP=155.013;SAR=0;SRF=146;SRP=320.045;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:87:63,24:63:2486:24:950:-59.6113,0,-197.679 0/1:59:30,29:30:1183:29:1173:-88.0863,0,-88.9774 0/1:51:41,10:41:1639:10:384:-19.5586,0,-132.384 0/1:19:12,7:12:479:7:271:-19.0334,0,-37.7413 dDocent_Contig_379 106 . N G 252.665 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=8;CIGAR=2X;DP=8;DPB=8;DPRA=0;EPP=20.3821;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=9.05174;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=277;QR=0;RO=0;RPL=0;RPP=20.3821;RPPR=0;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. 1|1:8:0,8:0:0:8:277:-25.2665,-2.40824,0 dDocent_Contig_380 129 . A G 113.395 . AB=0.16129;ABP=64.7922;AC=1;AF=0.125;AN=8;AO=10;CIGAR=1X;DP=136;DPB=136;DPRA=2.51351;EPP=24.725;EPPR=276.616;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=340;QR=4464;RO=126;RPL=0;RPP=24.725;RPPR=276.616;RPR=10;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=276.616;SRR=126;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:62:52,10:52:1847:10:340:-12.2604,0,-147.845 0/0:37:37,0:37:1309:0:0:0,-11.1381,-118.105 0/0:19:19,0:19:683:0:0:0,-5.71957,-61.7999 0/0:18:18,0:18:625:0:0:0,-5.41854,-56.5695 dDocent_Contig_382 22 . A G 11986 . AB=0.657303;ABP=117.781;AC=4;AF=0.5;AN=8;AO=351;CIGAR=5M1X4M1X4M;DP=534;DPB=553.733;DPRA=0;EPP=765.197;EPPR=100.727;GTI=0;LEN=1;MEANALT=8.25;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=13720;QR=1720;RO=45;RPL=0;RPP=765.197;RPPR=100.727;RPR=351;RUN=1;SAF=351;SAP=765.197;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:196:6,128,27,16:6:239:128,27,16:5052,1021,627:-477.845,-63.989,-45.1401,-395.979,0,-407.532,-428.091,-32.1092,-364.101,-442.956 1|0:168:18,124,18,0:18:681:124,18,0:4797,715,0:-391.621,-3.0532,-21.5558,-338.174,0,-388.578,-397.039,-58.8835,-393.997,-452.862 0|1:99:12,62,11,2:12:443:62,11,2:2421,419,77:-195.402,0,-17.5583,-164.648,-1.85269,-197.559,-192.692,-29.8995,-194.549,-228.313 1|0:71:9,37,16,3:9:357:37,16,3:1450,633,110:-139.222,-22.7068,-40.9582,-89.8366,0,-114.409,-132.943,-43.1091,-110.237,-161.428 dDocent_Contig_383 98 . N G 585.115 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=22;CIGAR=2X;DP=22;DPB=22;DPRA=0;EPP=50.7827;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=18.7558;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=647;QR=0;RO=0;RPL=22;RPP=50.7827;RPPR=0;RPR=0;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. 1|1:22:0,22:0:0:22:647:-58.5115,-6.62266,0 .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. dDocent_Contig_384 25 . G A 4530.13 . AB=0.813665;ABP=140.595;AC=5;AF=0.625;AN=8;AO=144;CIGAR=1X;DP=175;DPB=175;DPRA=0;EPP=315.702;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5647;QR=1129;RO=31;RPL=0;RPP=315.702;RPPR=70.3259;RPR=144;RUN=1;SAF=144;SAP=315.702;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:72:16,56:16:582:56:2171:-173.904,0,-31.0215 0/1:51:9,42:9:311:42:1635:-132.023,0,-12.9563 0/1:38:5,33:5:198:33:1339:-109.327,0,-6.75861 1/1:14:1,13:1:38:13:502:-41.7234,-0.417151,0 dDocent_Contig_385 37 . G A 1286.7 . AB=0.120792;ABP=1264.52;AC=3;AF=0.375;AN=8;AO=152;CIGAR=1X;DP=1492;DPB=1492;DPRA=0;EPP=333.074;EPPR=2906.27;GTI=0;LEN=1;MEANALT=1.25;MQM=59.8947;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.940789;PAIREDR=0.968586;PAO=0;PQA=0;PQR=0;PRO=0;QA=6014;QR=52799;RO=1337;RPL=0;RPP=333.074;RPPR=2906.27;RPR=152;RUN=1;SAF=152;SAP=333.074;SAR=0;SRF=1337;SRP=2906.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:482:449,30:449:17710:30:1170:0,-39.0191,-1486.95 0/1:481:424,57:424:16754:57:2279:-60.4839,0,-1361.77 0/1:367:320,47:320:12647:47:1841:-55.434,0,-1026.87 0/1:162:144,18:144:5688:18:724:-16.7191,0,-462.966 dDocent_Contig_386 7 . C T 3671.2 . AB=0.292776;ABP=199.202;AC=4;AF=0.5;AN=8;AO=154;CIGAR=1X;DP=526;DPB=526;DPRA=0;EPP=337.417;EPPR=797.793;GTI=0;LEN=1;MEANALT=1.5;MQM=59.9351;MQMR=58.8351;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.727027;PAO=0;PQA=0;PQR=0;PRO=0;QA=5886;QR=14272;RO=370;RPL=0;RPP=337.417;RPPR=806.455;RPR=154;RUN=1;SAF=154;SAP=337.417;SAR=0;SRF=369;SRP=797.793;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:188:114,73:114:4405:73:2797:-195.508,0,-339.809 0/1:133:101,32:101:3903:32:1218:-69.8757,0,-310.09 0/1:141:111,29:111:4274:29:1097:-56.5074,0,-341.263 0/1:64:44,20:44:1690:20:774:-50.7178,0,-132.221 dDocent_Contig_387 35 . A C 3247.08 . AB=0.8;ABP=69.4574;AC=5;AF=0.625;AN=8;AO=98;CIGAR=1X4M;DP=117;DPB=117;DPRA=0;EPP=215.815;EPPR=33.4109;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3922;QR=541;RO=14;RPL=0;RPP=215.815;RPPR=33.4109;RPR=98;RUN=1;SAF=98;SAP=215.815;SAR=0;SRF=14;SRP=33.4109;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:32:0,2,30:0:0:2,30:80,1205:-108.322,-101.732,-101.13,-9.0309,-2.04117,0 0|1:29:4,0,25:4:157:0,25:0,987:-80.3906,-81.5947,-94.5071,0,-13.3048,-5.7791 0|1:35:5,0,30:5:189:0,30:0,1203:-98.0049,-99.51,-114.999,0,-15.8696,-6.83865 0|1:21:5,3,13:5:195:3,13:120,527:-41.9571,-33.578,-48.6996,0,-6.13377,-12.1093 dDocent_Contig_388 17 . T G 52.3112 . AB=0.101124;ABP=126.003;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X;DP=259;DPB=259;DPRA=1.57059;EPP=22.5536;EPPR=545.878;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=0.972;PAO=0;PQA=0;PQR=0;PRO=0;QA=362;QR=10025;RO=250;RPL=0;RPP=22.5536;RPPR=545.878;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=250;SRP=545.878;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:89:80,9:80:3205:9:362:-6.15194,0,-261.719 0/0:57:57,0:57:2295:0:0:0,-17.1587,-206.706 0/0:75:75,0:75:3007:0:0:0,-22.5772,-270.709 0/0:38:38,0:38:1518:0:0:0,-11.4391,-136.86 dDocent_Contig_389 69 . T A 273.815 . AB=0.325;ABP=13.6505;AC=1;AF=0.125;AN=8;AO=13;CIGAR=1M1D14M1X12M;DP=85;DPB=84.5172;DPRA=2.66667;EPP=31.2394;EPPR=155.013;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=443;QR=2510;RO=70;RPL=13;RPP=31.2394;RPPR=155.013;RPR=0;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=70;SRP=155.013;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:40:26,13:26:940:13:443:-28.3023,0,-73.0293 0|0:17:17,0:17:604:0:0:0,-5.11751,-54.6901 0|0:20:19,0:19:675:0:0:0,-5.71957,-60.6787 0|0:8:8,0:8:291:0:0:0,-2.40824,-26.5399 dDocent_Contig_390 124 . G A 31.2708 . AB=0.2;ABP=14.7363;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=51;DPB=51;DPRA=1.25;EPP=9.52472;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=95;QR=1626;RO=48;RPL=0;RPP=9.52472;RPPR=107.241;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=107.241;SRR=48;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:23:23,0:23:758:0:0:0,-6.92369,-68.5254 0/1:15:12,3:12:416:3:95:-4.34853,0,-33.2572 0/0:6:6,0:6:209:0:0:0,-1.80618,-19.1511 0/0:7:7,0:7:243:0:0:0,-2.10721,-22.2089 dDocent_Contig_392 122 . T C 213.818 . AB=0.151079;ABP=149.999;AC=2;AF=0.25;AN=8;AO=28;CIGAR=1X;DP=261;DPB=261;DPRA=2.01802;EPP=63.8115;EPPR=508.963;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=967;QR=7934;RO=233;RPL=0;RPP=63.8115;RPPR=508.963;RPR=28;RUN=1;SAF=0;SAP=63.8115;SAR=28;SRF=0;SRP=508.963;SRR=233;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:66:59,7:59:2022:7:241:-2.15842,0,-162.389 0/0:85:78,7:78:2656:7:245:0,-3.19632,-216.905 0/1:73:59,14:59:2015:14:481:-21.6427,0,-159.65 0/0:37:37,0:37:1241:0:0:0,-11.1381,-111.985 dDocent_Contig_393 42 . G A 6438.46 . AB=0.576408;ABP=21.9248;AC=4;AF=0.5;AN=8;AO=215;CIGAR=1X;DP=373;DPB=373;DPRA=0;EPP=461.231;EPPR=346.103;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=8454;QR=6129;RO=158;RPL=1;RPP=461.231;RPPR=346.103;RPR=214;RUN=1;SAF=215;SAP=469.877;SAR=0;SRF=158;SRP=346.103;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:140:75,65:75:2919:65:2546:-187.151,0,-220.682 0/1:136:51,85:51:2011:85:3332:-259.013,0,-140.253 0/1:54:21,33:21:792:33:1304:-101.368,0,-55.3312 0/1:43:11,32:11:407:32:1272:-101.803,0,-24.0209 dDocent_Contig_394 107 . N A 97.9779 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.586;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=105;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:105:-9.79616,-0.90309,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_395 55 . G C 2240.62 . AB=0.310714;ABP=90.1484;AC=3;AF=0.375;AN=8;AO=92;CIGAR=1X;DP=342;DPB=342;DPRA=0;EPP=202.786;EPPR=545.878;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3657;QR=9786;RO=250;RPL=92;RPP=202.786;RPPR=545.878;RPR=0;RUN=1;SAF=92;SAP=202.786;SAR=0;SRF=250;SRP=545.878;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:105:66,39:66:2545:39:1576:-110.465,0,-197.585 0/1:72:48,24:48:1889:24:951:-64.2158,0,-148.542 0/1:103:79,24:79:3105:24:934:-53.3465,0,-248.547 0/0:62:57,5:57:2247:5:196:0,-0.650253,-184.388 dDocent_Contig_396 9 . C T 14499.4 . AB=0.0525433;ABP=3114.2;AC=4;AF=0.5;AN=8;AO=94;CIGAR=1X4M;DP=1789;DPB=1789;DPRA=0;EPP=207.129;EPPR=2463.29;GTI=0;LEN=1;MEANALT=3.25;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=1.11022e-16;PAIRED=1;PAIREDR=0.999117;PAO=0;PQA=0;PQR=0;PRO=0;QA=3595;QR=44363;RO=1133;RPL=0;RPP=207.129;RPPR=2463.29;RPR=94;RUN=1;SAF=94;SAP=207.129;SAR=0;SRF=1133;SRP=2463.29;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:603:362,218,23:362:14183:218,23:8548,859:-593.989,0,-1100.65,-632.641,-1095.95,-1791.97 0|1:525:317,181,25:317:12399:181,25:7104,968:-488.83,0,-964.929,-504.737,-939.895,-1516.62 0|1:363:250,87,24:250:9806:87,24:3417,925:-205.79,0,-780.241,-205.092,-730.474,-1004.29 0|1:298:204,71,22:204:7975:71,22:2776,843:-166.821,0,-634.28,-159.047,-586.467,-808.071 dDocent_Contig_397 7 . T C 13955 . AB=0.675451;ABP=195.789;AC=4;AF=0.5;AN=8;AO=487;CIGAR=1X;DP=721;DPB=721;DPRA=0;EPP=1060.52;EPPR=508.963;GTI=0;LEN=1;MEANALT=1.25;MQM=52.7844;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.392197;PAIREDR=0.939914;PAO=0;PQA=0;PQR=0;PRO=0;QA=18759;QR=8920;RO=233;RPL=0;RPP=1060.52;RPPR=508.963;RPR=487;RUN=1;SAF=487;SAP=1060.52;SAR=0;SRF=233;SRP=508.963;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:234:72,162:72:2738:162:6253:-470.632,0,-176.155 0/1:194:57,137:57:2211:137:5287:-386.462,0,-140.809 0/1:180:55,125:55:2087:125:4797:-364.673,0,-133.875 0/1:113:49,63:49:1884:63:2422:-179.227,0,-135.741 dDocent_Contig_398 98 . N T 3211.08 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=101;CIGAR=1X;DP=101;DPB=101;DPRA=0;EPP=222.329;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=3547;QR=0;RO=0;RPL=101;RPP=222.329;RPPR=0;RPR=0;RUN=1;SAF=101;SAP=222.329;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:63:0,63:0:0:63:2197:-197.996,-18.9649,0 1/1:10:0,10:0:0:10:358:-32.5627,-3.0103,0 1/1:19:0,19:0:0:19:674:-60.9872,-5.71957,0 1/1:9:0,9:0:0:9:318:-28.9606,-2.70927,0 dDocent_Contig_399 25 . G A 428.933 . AB=0.185714;ABP=123.124;AC=4;AF=0.5;AN=8;AO=26;CIGAR=1X;DP=140;DPB=140;DPRA=0;EPP=59.4686;EPPR=250.558;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=990;QR=4459;RO=114;RPL=0;RPP=59.4686;RPPR=250.558;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=114;SRP=250.558;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:51:38,13:38:1485:13:504:-30.3532,0,-118.557 0/1:27:23,4:23:905:4:137:-4.53609,0,-73.6354 0/1:35:31,4:31:1208:4:155:-3.78819,0,-98.4573 0/1:27:22,5:22:861:5:194:-9.70457,0,-69.6787 dDocent_Contig_400 29 . G T 35.0031 . AB=0.109589;ABP=196.301;AC=1;AF=0.125;AN=8;AO=17;CIGAR=1X;DP=432;DPB=432;DPRA=0.963636;EPP=39.9253;EPPR=904.171;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.985542;PAO=0;PQA=0;PQR=0;PRO=0;QA=567;QR=14343;RO=415;RPL=0;RPP=39.9253;RPPR=904.171;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=415;SRP=904.171;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:146:130,16:130:4571:16:534:-4.42099,0,-367.577 0/0:93:93,0:93:3095:0:0:0,-27.9958,-278.764 0/0:127:127,0:127:4399:0:0:0,-38.2308,-396.075 0/0:66:65,1:65:2278:1:33:0,-16.5688,-201.974 dDocent_Contig_401 83 . G A 153.919 . AB=0.159091;ABP=91.8433;AC=1;AF=0.125;AN=8;AO=14;CIGAR=1X;DP=319;DPB=319;DPRA=1.14286;EPP=33.4109;EPPR=665.309;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=472;QR=10345;RO=305;RPL=14;RPP=33.4109;RPPR=665.309;RPR=0;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=305;SRP=665.309;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:88:74,14:74:2548:14:472:-16.3127,0,-203.09 0/0:114:114,0:114:3801:0:0:0,-34.3174,-342.307 0/0:91:91,0:91:3117:0:0:0,-27.3937,-280.772 0/0:26:26,0:26:879:0:0:0,-7.82678,-79.4209 dDocent_Contig_402 61 . A G 287.643 . AB=0.197674;ABP=71.2854;AC=2;AF=0.25;AN=8;AO=18;CIGAR=1X;DP=138;DPB=138;DPRA=1.2;EPP=42.0968;EPPR=263.587;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=665;QR=4697;RO=120;RPL=18;RPP=42.0968;RPPR=263.587;RPR=0;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=120;SRP=263.587;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:30:30,0:30:1168:0:0:0,-9.0309,-105.405 0/0:22:21,1:21:828:1:39:0,-2.7261,-70.94 0/1:56:42,14:42:1654:14:509:-29.2832,0,-132.24 0/1:30:27,3:27:1047:3:117:-1.87948,0,-85.4983 dDocent_Contig_403 12 . T A 16217.4 . AB=0.874439;ABP=274.581;AC=6;AF=0.75;AN=8;AO=493;CIGAR=1X;DP=542;DPB=542;DPRA=0;EPP=1073.55;EPPR=92.7497;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.997972;PAIREDR=0.918367;PAO=0;PQA=0;PQR=0;PRO=0;QA=19655;QR=1957;RO=49;RPL=0;RPP=1073.55;RPPR=109.412;RPR=493;RUN=1;SAF=493;SAP=1073.55;SAR=0;SRF=47;SRP=92.7497;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:136:11,125:11:445:125:4973:-407.059,-0.534375,0 1/1:183:10,173:10:405:173:6899:-583.789,-18.2781,0 0/1:102:11,91:11:444:91:3626:-295.663,0,-9.61075 0/1:121:17,104:17:663:104:4157:-337.676,0,-23.5702 dDocent_Contig_404 10 . A T 288.118 . AB=0.0621118;ABP=271.153;AC=1;AF=0.125;AN=8;AO=14;CIGAR=1X1M1X1M;DP=247;DPB=247;DPRA=0;EPP=33.4109;EPPR=296.159;GTI=0;LEN=1;MEANALT=2.25;MQM=38.3571;MQMR=60;NS=4;NUMALT=2;ODDS=1.38778e-17;PAIRED=1;PAIREDR=0.837037;PAO=0;PQA=0;PQR=0;PRO=0;QA=493;QR=5377;RO=135;RPL=0;RPP=33.4109;RPPR=296.159;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=135;SRP=296.159;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:86:54,4,28:54:2156:4,28:124,1114:0,-7.35717,-183.935,-6.04895,-174.863,-175.299 0|0:72:31,4,36:31:1230:4,36:159,1448:-17.0138,-14.0471,-114.212,0,-88.9903,-90.4249 0|0:62:36,2,24:36:1437:2,24:78,961:-10.2681,-14.6925,-132.6,0,-111.966,-111.134 0|1:27:14,4,9:14:554:4,9:132,362:-5.49648,0,-44.5795,-5.62113,-41.6657,-48.5801 dDocent_Contig_408 8 . T G 1386.02 . AB=0.166348;ABP=508.723;AC=4;AF=0.5;AN=8;AO=87;CIGAR=1X;DP=523;DPB=523;DPRA=0;EPP=191.928;EPPR=949.772;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3336;QR=16706;RO=436;RPL=0;RPP=191.928;RPPR=949.772;RPR=87;RUN=1;SAF=87;SAP=191.928;SAR=0;SRF=436;SRP=949.772;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:203:172,31:172:6629:31:1192:-46.468,0,-535.389 0/1:184:152,32:152:5810:32:1222:-54.8842,0,-467.469 0/1:73:61,12:61:2322:12:461:-19.8652,0,-187.222 0/1:63:51,12:51:1945:12:461:-22.8743,0,-156.326 dDocent_Contig_409 10 . T C 118.592 . AB=0.103825;ABP=252.492;AC=2;AF=0.25;AN=8;AO=26;CIGAR=1X;DP=356;DPB=356;DPRA=0;EPP=59.4686;EPPR=719.596;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1040;QR=12769;RO=330;RPL=0;RPP=59.4686;RPPR=719.596;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=330;SRP=719.596;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:158:142,16:142:5508:16:643:-10.6401,0,-448.065 0/0:105:102,3:102:3963:3:122:0,-20.2357,-345.345 0/0:68:64,4:64:2457:4:155:0,-6.14568,-206.971 0/1:25:22,3:22:841:3:120:-3.66194,0,-68.4751 dDocent_Contig_410 9 . T C 3543.77 . AB=0.0805861;ABP=420.132;AC=0;AF=0;AN=8;AO=22;CIGAR=1M1D1M1X5M;DP=273;DPB=250.222;DPRA=0;EPP=50.7827;EPPR=146.327;GTI=0;LEN=1;MEANALT=4.5;MQM=60;MQMR=60;NS=4;NUMALT=4;ODDS=0;PAIRED=0.318182;PAIREDR=0.69697;PAO=0;PQA=0;PQR=0;PRO=0;QA=841;QR=2578;RO=66;RPL=0;RPP=50.7827;RPPR=146.327;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=66;SRP=146.327;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:116:27,4,16,55,13:27:1059:4,16,55,13:156,606,2093,494:-163.542,-158.846,-244.738,-121.987,-196.259,-204.267,0,-74.2741,-37.4174,-70.5412,-131.16,-205.432,-168.573,-46.5891,-214.342 0|0:88:21,12,0,31,23:21:826:12,0,31,23:463,0,1166,871:-92.6554,-60.952,-125.292,-98.977,-128.904,-166.928,-3.44899,-33.3776,-71.4012,-62.0693,-27.5712,-57.4995,-95.5236,0,-88.5999 0|0:34:3,4,0,17,9:3:116:4,0,17,9:151,0,655,335:-70.7713,-59.2984,-67.6231,-71.6744,-68.8273,-81.2032,-17.884,-15.0378,-27.4144,-22.2968,-44.2581,-41.4115,-53.7866,0,-51.0774 0|0:35:15,2,0,12,4:15:577:2,0,12,4:71,0,456,145:-32.8978,-31.6306,-78.4057,-37.4132,-79.0078,-84.7908,0,-41.6093,-47.3917,-43.7794,-25.5779,-67.1728,-72.9555,-35.5571,-71.7514 dDocent_Contig_412 96 . T C 5696.58 . AB=0.468254;ABP=7.42218;AC=4;AF=0.5;AN=8;AO=236;CIGAR=1X;DP=504;DPB=504;DPRA=0;EPP=515.478;EPPR=584.965;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=8064;QR=9164;RO=268;RPL=236;RPP=515.478;RPPR=584.965;RPR=0;RUN=1;SAF=236;SAP=515.478;SAR=0;SRF=268;SRP=584.965;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:177:84,93:84:2900:93:3156:-230.997,0,-207.968 0/1:182:131,51:131:4435:51:1761:-103.989,0,-344.556 0/1:77:28,49:28:970:49:1670:-127.407,0,-64.4344 0/1:68:25,43:25:859:43:1477:-112.754,0,-57.155 dDocent_Contig_423 1 . N G 463.248 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=25;CIGAR=1X;DP=25;DPB=25;DPRA=0;EPP=57.2971;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=21.28;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=989;QR=0;RO=0;RPL=0;RPP=57.2971;RPPR=0;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:10:0,10:0:0:10:392:-18.9575,-3.0103,0 1/1:8:0,8:0:0:8:314:-18.397,-2.40824,0 1/1:7:0,7:0:0:7:283:-8.49312,-2.10721,0 ./.:.:.:.:.:.:.:. dDocent_Contig_441 107 . N G 220.421 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=7;CIGAR=1X;DP=7;DPB=7;DPRA=0;EPP=18.2106;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=54;MQMR=0;NS=1;NUMALT=1;ODDS=8.35859;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=242;QR=0;RO=0;RPL=0;RPP=18.2106;RPPR=0;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:7:0,7:0:0:7:242:-22.042,-2.10721,0 ./.:.:.:.:.:.:.:. dDocent_Contig_455 45 . G A 16194.9 . AB=0.892308;ABP=437.472;AC=6;AF=0.75;AN=8;AO=494;CIGAR=1X;DP=544;DPB=544;DPRA=0;EPP=1075.72;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.997976;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=19730;QR=2018;RO=50;RPL=0;RPP=1075.72;RPPR=111.584;RPR=494;RUN=1;SAF=494;SAP=1075.72;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:181:22,159:22:880:159:6341:-515.933,0,-25.0186 1/1:116:7,109:7:283:109:4337:-364.438,-9.07648,0 0/1:144:13,131:13:530:131:5252:-429.178,0,-4.69829 1/1:103:8,95:8:325:95:3800:-312.386,-1.38646,0 dDocent_Contig_456 8 . T G 1666.77 . AB=0.205251;ABP=319.19;AC=4;AF=0.5;AN=8;AO=86;CIGAR=1X;DP=419;DPB=419;DPRA=0;EPP=189.757;EPPR=726.111;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3300;QR=12809;RO=333;RPL=0;RPP=189.757;RPPR=726.111;RPR=86;RUN=1;SAF=86;SAP=189.757;SAR=0;SRF=333;SRP=726.111;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:144:124,20:124:4769:20:766:-25.9199,0,-385.889 0/1:130:106,24:106:4084:24:918:-43.8038,0,-328.507 0/1:97:69,28:69:2650:28:1074:-67.7664,0,-209.489 0/1:48:34,14:34:1306:14:542:-34.6765,0,-103.377 dDocent_Contig_457 15 . C A 788.624 . AB=0.181818;ABP=215.815;AC=4;AF=0.5;AN=8;AO=44;CIGAR=1X;DP=242;DPB=242;DPRA=0;EPP=98.5551;EPPR=432.962;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=2.77556e-17;PAIRED=1;PAIREDR=0.994949;PAO=0;PQA=0;PQR=0;PRO=0;QA=1731;QR=7827;RO=198;RPL=0;RPP=98.5551;RPPR=432.962;RPR=44;RUN=1;SAF=44;SAP=98.5551;SAR=0;SRF=198;SRP=432.962;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:67:56,11:56:2226:11:435:-19.3361,0,-180.353 0/1:64:56,8:56:2196:8:305:-8.54187,0,-178.565 0/1:71:58,13:58:2304:13:512:-25.053,0,-186.16 0/1:40:28,12:28:1101:12:479:-31.4208,0,-87.3377 dDocent_Contig_458 98 . N G 1332.82 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=61;CIGAR=1X;DP=63;DPB=63;DPRA=0;EPP=135.47;EPPR=0;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=0.983607;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1465;QR=0;RO=0;RPL=61;RPP=135.47;RPPR=0;RPR=0;RUN=1;SAF=61;SAP=135.47;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:12:0,12:0:0:12:270:-24.5224,-3.61236,0 1/1:32:0,31:0:0:31:755:-68.129,-9.33193,0 1/1:2:0,2:0:0:2:61:-5.79376,-0.60206,0 1/1:17:0,16:0:0:16:379:-34.2336,-4.81648,0 dDocent_Contig_459 8 . G T 8411.02 . AB=0.693827;ABP=135.17;AC=4;AF=0.5;AN=8;AO=281;CIGAR=1X;DP=405;DPB=405;DPRA=0;EPP=613.194;EPPR=272.273;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=10753;QR=4732;RO=124;RPL=0;RPP=613.194;RPPR=272.273;RPR=281;RUN=1;SAF=281;SAP=613.194;SAR=0;SRF=124;SRP=272.273;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:105:33,72:33:1251:72:2749:-215.982,0,-81.2725 0/1:125:37,88:37:1403:88:3371:-265.894,0,-88.9192 0/1:110:44,66:44:1691:66:2515:-193.433,0,-119.336 0/1:65:10,55:10:387:55:2118:-171.282,0,-15.6206 dDocent_Contig_460 73 . C T 345.004 . AB=0.150602;ABP=179.03;AC=2;AF=0.25;AN=8;AO=28;CIGAR=1X2M1X;DP=349;DPB=349;DPRA=0.83;EPP=63.8115;EPPR=697.881;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1078;QR=12167;RO=320;RPL=28;RPP=63.8115;RPPR=697.881;RPR=0;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=320;SRP=697.881;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:130:112,18:112:4289:18:683:-22.6619,0,-346.948 0|0:100:100,0:100:3812:0:0:0,-30.103,-343.19 0|0:83:79,3:79:2949:3:120:0,-13.7689,-254.433 0|1:36:29,7:29:1117:7:275:-14.2822,0,-89.9939 dDocent_Contig_461 13 . T G 13913.3 . AB=0.0451322;ABP=2790.39;AC=0;AF=0;AN=8;AO=70;CIGAR=3M1X;DP=1551;DPB=1400.5;DPRA=0;EPP=155.013;EPPR=1386.24;GTI=0;LEN=1;MEANALT=7;MQM=60;MQMR=60;NS=4;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2715;QR=24934;RO=637;RPL=0;RPP=155.013;RPPR=1386.24;RPR=70;RUN=1;SAF=70;SAP=155.013;SAR=0;SRF=637;SRP=1386.24;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:507:226,8,103,122,37:226:8906:8,103,122,37:308,3836,4748,1449:-322.147,-364.891,-1095.17,-76.2067,-783.603,-777.886,0,-707.403,-418.718,-695.966,-271.034,-978.433,-689.747,-613.546,-992.584 0|0:431:167,5,73,174,8:167:6482:5,73,174,8:196,2793,6812,317:-509.812,-543.965,-1075.02,-330.89,-847.328,-841.471,0,-516.442,-303.366,-480.181,-533.993,-1050.43,-837.356,-506.469,-1064.14 0|0:360:141,3,60,137,18:141:5509:3,60,137,18:114,2268,5320,689:-394.661,-427.758,-879.729,-251.208,-694.733,-686.02,0,-443.531,-266.982,-411.638,-380.573,-824.099,-647.549,-396.346,-828.029 0|0:253:103,13,65,60,7:103:4037:13,65,60,7:495,2455,2356,260:-170.202,-160.608,-488.659,0,-291.364,-312.396,-7.43505,-298.804,-138.195,-321.342,-179.938,-471.302,-310.693,-318.133,-509.794 dDocent_Contig_463 111 . A T 3974.56 . AB=0.623482;ABP=35.723;AC=4;AF=0.5;AN=8;AO=154;CIGAR=1X;DP=247;DPB=247;DPRA=0;EPP=337.417;EPPR=204.957;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5290;QR=3210;RO=93;RPL=0;RPP=337.417;RPPR=204.957;RPR=154;RUN=1;SAF=0;SAP=337.417;SAR=154;SRF=0;SRP=204.957;SRR=93;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:37:20,17:20:696:17:576:-41.0233,0,-51.8261 0/1:64:34,30:34:1161:30:1045:-75.0963,0,-85.5288 0/1:66:22,44:22:763:44:1502:-115.605,0,-49.123 0/1:80:17,63:17:590:63:2167:-171.221,0,-29.3448 dDocent_Contig_464 15 . G T 1825.49 . AB=0.414634;ABP=13.391;AC=4;AF=0.5;AN=8;AO=68;CIGAR=1X;DP=164;DPB=164;DPRA=0;EPP=150.67;EPPR=211.472;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2623;QR=3812;RO=96;RPL=0;RPP=150.67;RPPR=211.472;RPR=68;RUN=1;SAF=68;SAP=150.67;SAR=0;SRF=96;SRP=211.472;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:56:26,30:26:1037:30:1164:-88.196,0,-76.7683 0/1:33:16,17:16:619:17:650:-48.9006,0,-46.1036 0/1:43:32,11:32:1276:11:419:-25.117,0,-102.166 0/1:32:22,10:22:880:10:390:-25.8252,0,-69.8756 dDocent_Contig_465 56 . G A 52.5062 . AB=0.148148;ABP=32.0437;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=163;DPB=163;DPRA=0.595588;EPP=11.6962;EPPR=348.274;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=158;QR=6329;RO=159;RPL=4;RPP=11.6962;RPPR=348.274;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=159;SRP=348.274;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:65:65,0:65:2577:0:0:0,-19.5669,-232.072 0/0:50:50,0:50:1993:0:0:0,-15.0515,-179.564 0/0:21:21,0:21:849:0:0:0,-6.32163,-76.7227 0/1:27:23,4:23:910:4:158:-6.47246,0,-74.0787 dDocent_Contig_466 11 . G T 42.7273 . AB=0.111111;ABP=38.4777;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1M4I2M1X2M1X;DP=105;DPB=105.857;DPRA=1.03846;EPP=9.52472;EPPR=159.356;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=118;QR=2769;RO=72;RPL=0;RPP=9.52472;RPPR=159.356;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=72;SRP=159.356;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:38:26,0:26:998:0:0:0,-7.82678,-89.7447 0|0:21:14,0:14:540:0:0:0,-4.21442,-48.5709 0|0:19:18,0:18:692:0:0:0,-5.41854,-62.2248 0|1:27:14,3:14:539:3:118:-5.49456,0,-43.3541 dDocent_Contig_468 116 . T A 99.0394 . AB=0.141304;ABP=105.825;AC=2;AF=0.25;AN=8;AO=13;CIGAR=1X;DP=161;DPB=161;DPRA=1.33333;EPP=31.2394;EPPR=320.045;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=436;QR=4938;RO=146;RPL=0;RPP=31.2394;RPPR=320.045;RPR=13;RUN=1;SAF=0;SAP=31.2394;SAR=13;SRF=0;SRP=320.045;SRR=146;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:32:32,0:32:1112:0:0:0,-9.63296,-100.39 0/0:37:37,0:37:1267:0:0:0,-11.1381,-114.332 0/1:67:58,8:58:1906:8:281:-5.66157,0,-151.87 0/1:25:19,5:19:653:5:155:-6.68605,0,-51.5183 dDocent_Contig_469 18 . C A 11475.9 . AB=0.519022;ABP=5.32339;AC=4;AF=0.5;AN=8;AO=382;CIGAR=1X;DP=736;DPB=736;DPRA=0;EPP=832.513;EPPR=771.712;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=55.9887;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.799435;PAO=0;PQA=0;PQR=0;PRO=0;QA=15274;QR=14280;RO=354;RPL=0;RPP=832.513;RPPR=771.712;RPR=382;RUN=1;SAF=382;SAP=832.513;SAR=0;SRF=354;SRP=771.712;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:337:179,158:179:7198:158:6330:-467.982,0,-538.965 0/1:179:86,93:86:3485:93:3738:-282.534,0,-254.27 0/1:124:55,69:55:2232:69:2728:-208.301,0,-155.774 0/1:96:34,62:34:1365:62:2478:-194.266,0,-93.0315 dDocent_Contig_470 10 . T A 11103.3 . AB=0.231724;ABP=456.237;AC=0;AF=0;AN=8;AO=168;CIGAR=2X;DP=725;DPB=725;DPRA=0;EPP=367.818;EPPR=430.79;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=59.9645;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.994924;PAO=0;PQA=0;PQR=0;PRO=0;QA=6684;QR=7803;RO=197;RPL=0;RPP=367.818;RPPR=430.79;RPR=168;RUN=1;SAF=168;SAP=367.818;SAR=0;SRF=197;SRP=430.79;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:266:66,49,151:66:2623:49,151:1944,5999:-473.988,-333.837,-535.034,0,-55.9283,-170.492 0|0:247:70,67,110:70:2746:67,110:2673,4346:-336.515,-137.451,-343.082,0,-5.66031,-192.685 0|0:152:43,35,74:43:1710:35,74:1396,2930:-228.181,-126.162,-256.415,0,-25.8248,-118.512 0|0:60:18,17,25:18:724:17,25:671,1002:-77.1379,-27.3478,-81.8963,0,-4.46175,-52.1435 dDocent_Contig_471 97 . A T 14787.9 . AB=0.810427;ABP=179.62;AC=6;AF=0.75;AN=8;AO=499;CIGAR=1X;DP=539;DPB=539;DPRA=0;EPP=1086.58;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=17155;QR=1299;RO=40;RPL=499;RPP=1086.58;RPPR=89.8692;RPR=0;RUN=1;SAF=499;SAP=1086.58;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:157:0,157:0:0:157:5436:-489.401,-47.2617,0 1/1:171:0,171:0:0:171:5875:-528.898,-51.4761,0 0/1:124:26,98:26:846:98:3337:-263.233,0,-39.1158 0/1:87:14,73:14:453:73:2507:-199.7,0,-14.8919 dDocent_Contig_473 107 . N A 92.1313 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=5;CIGAR=1X;DP=5;DPB=5;DPRA=0;EPP=13.8677;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=21;MQMR=0;NS=1;NUMALT=1;ODDS=6.97229;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=141;QR=0;RO=0;RPL=0;RPP=13.8677;RPPR=0;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:5:0,5:0:0:5:141:-9.21273,-1.50515,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_474 18 . G T 1005.59 . AB=0.311475;ABP=40.6729;AC=1;AF=0.125;AN=8;AO=42;CIGAR=1X;DP=363;DPB=363;DPRA=1.34194;EPP=94.2121;EPPR=700.053;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1693;QR=12736;RO=321;RPL=0;RPP=94.2121;RPPR=700.053;RPR=42;RUN=1;SAF=42;SAP=94.2121;SAR=0;SRF=321;SRP=700.053;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:122:84,38:84:3359:38:1533:-101.48,0,-265.625 0/0:70:70,0:70:2811:0:0:0,-21.0721,-253.095 0/0:85:85,0:85:3341:0:0:0,-25.5875,-300.738 0/0:86:82,4:82:3225:4:160:0,-11.105,-275.542 dDocent_Contig_476 18 . C T 66.5192 . AB=0.106383;ABP=129.51;AC=1;AF=0.125;AN=8;AO=32;CIGAR=1X;DP=604;DPB=604;DPRA=0;EPP=72.4974;EPPR=1221.21;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.71875;PAIREDR=0.909091;PAO=0;PQA=0;PQR=0;PRO=0;QA=1267;QR=22576;RO=561;RPL=0;RPP=72.4974;RPPR=1221.21;RPR=32;RUN=1;SAF=32;SAP=72.4974;SAR=0;SRF=561;SRP=1221.21;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:178:168,8:168:6759:8:319:0,-24.2956,-578.904 0/0:185:175,9:175:7069:9:348:0,-24.1266,-604.156 0/0:147:135,5:135:5407:5:201:0,-24.0758,-467.989 0/1:94:83,10:83:3341:10:399:-7.87377,0,-272.332 dDocent_Contig_477 109 . C T 3447.24 . AB=0.40327;ABP=32.837;AC=4;AF=0.5;AN=8;AO=148;CIGAR=1X3M;DP=367;DPB=367;DPRA=0;EPP=324.388;EPPR=443.819;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=2.77556e-17;PAIRED=0.959459;PAIREDR=0.965517;PAO=0;PQA=0;PQR=0;PRO=0;QA=5059;QR=6831;RO=203;RPL=0;RPP=324.388;RPPR=443.819;RPR=148;RUN=1;SAF=0;SAP=324.388;SAR=148;SRF=0;SRP=443.819;SRR=203;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:122:69,8,44:69:2338:8,44:276,1487:-99.7869,-98.1331,-285.306,0,-167.175,-176.354 0|1:96:54,0,42:54:1829:0,42:0,1430:-100.096,-116.352,-264.649,0,-148.637,-135.994 0|1:100:58,5,35:58:1948:5,35:159,1208:-80.7066,-85.3683,-241.661,0,-145.019,-147.282 0|1:49:22,0,27:22:716:0,27:0,934:-69.6241,-76.2467,-134.034,0,-58.122,-49.9941 dDocent_Contig_478 9 . G T 1135.4 . AB=0.371901;ABP=20.2565;AC=3;AF=0.375;AN=8;AO=48;CIGAR=1X;DP=166;DPB=166;DPRA=0;EPP=107.241;EPPR=259.244;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.958333;PAIREDR=0.949153;PAO=0;PQA=0;PQR=0;PRO=0;QA=1816;QR=4499;RO=118;RPL=0;RPP=107.241;RPPR=259.244;RPR=48;RUN=1;SAF=48;SAP=107.241;SAR=0;SRF=118;SRP=259.244;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:45:42,3:42:1613:3:117:0,-2.63597,-134.526 0/1:44:35,9:35:1332:9:339:-17.6179,0,-106.92 0/1:53:21,32:21:779:32:1205:-92.7881,0,-54.4722 0/1:24:20,4:20:775:4:155:-7.10072,0,-62.8538 dDocent_Contig_479 9 . G C 3865.5 . AB=0.435185;ABP=14.8328;AC=4;AF=0.5;AN=8;AO=141;CIGAR=1X;DP=324;DPB=324;DPRA=0;EPP=309.188;EPPR=400.39;GTI=0;LEN=1;MEANALT=1;MQM=58.8652;MQMR=59.3333;NS=4;NUMALT=1;ODDS=0;PAIRED=0.985816;PAIREDR=0.994536;PAO=0;PQA=0;PQR=0;PRO=0;QA=5463;QR=7006;RO=183;RPL=0;RPP=309.188;RPPR=400.39;RPR=141;RUN=1;SAF=141;SAP=309.188;SAR=0;SRF=183;SRP=400.39;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:79:49,30:49:1887:30:1166:-81.0206,0,-146.008 0/1:107:48,59:48:1816:59:2289:-171.281,0,-131.479 0/1:90:57,33:57:2187:33:1273:-87.7073,0,-169.474 0/1:48:29,19:29:1116:19:735:-52.0306,0,-86.2921 dDocent_Contig_481 45 . T C 3681.25 . AB=0.433225;ABP=14.9003;AC=4;AF=0.5;AN=8;AO=133;CIGAR=1X;DP=307;DPB=307;DPRA=0;EPP=291.816;EPPR=372.211;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5166;QR=6550;RO=174;RPL=0;RPP=291.816;RPPR=372.211;RPR=133;RUN=1;SAF=133;SAP=291.816;SAR=0;SRF=174;SRP=380.846;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:70:53,17:53:1973:17:672:-39.7347,0,-156.708 0/1:88:44,44:44:1661:44:1717:-128.272,0,-123.236 0/1:73:36,37:36:1347:37:1444:-108.244,0,-99.5216 0/1:76:41,35:41:1569:35:1333:-97.3633,0,-118.587 dDocent_Contig_482 1 . N G 373.524 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=10;CIGAR=1X;DP=10;DPB=10;DPRA=0;EPP=24.725;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=6.77626e-21;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=397;QR=0;RO=0;RPL=0;RPP=24.725;RPPR=0;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:75:-7.1188,-0.60206,0 1/1:6:0,6:0:0:6:240:-21.9745,-1.80618,0 1/1:2:0,2:0:0:2:82:-7.77968,-0.60206,0 dDocent_Contig_483 22 . C A 1011.27 . AB=0.12987;ABP=736.009;AC=2;AF=0.25;AN=8;AO=87;CIGAR=1X;DP=1002;DPB=1002;DPRA=1.89333;EPP=191.928;EPPR=1987.74;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3488;QR=36635;RO=914;RPL=0;RPP=191.928;RPPR=1987.74;RPR=87;RUN=1;SAF=87;SAP=191.928;SAR=0;SRF=914;SRP=1987.74;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:326:278,48:278:11181:48:1918:-74.6855,0,-907.348 0/1:290:258,32:258:10341:32:1288:-28.8854,0,-842.67 0/0:236:228,7:228:9158:7:282:0,-45.3546,-797.896 0/0:150:150,0:150:5955:0:0:0,-45.1545,-535.719 dDocent_Contig_484 1 . N G 75.9504 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=4.89285;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=80;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:80:-7.59179,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_485 14 . G C 1983.66 . AB=0.186047;ABP=481.593;AC=4;AF=0.5;AN=8;AO=104;CIGAR=1X;DP=559;DPB=559;DPRA=0;EPP=228.843;EPPR=991.03;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.8835;NS=4;NUMALT=1;ODDS=0;PAIRED=0.951923;PAIREDR=0.953846;PAO=0;PQA=0;PQR=0;PRO=0;QA=4122;QR=18140;RO=455;RPL=0;RPP=228.843;RPPR=991.03;RPR=104;RUN=1;SAF=104;SAP=228.843;SAR=0;SRF=455;SRP=991.03;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:160:125,35:125:4910:35:1404:-78.4482,0,-393.631 0/1:152:127,25:127:5099:25:962:-41.1099,0,-409.958 0/1:150:120,30:120:4826:30:1202:-63.2971,0,-389.058 0/1:97:83,14:83:3305:14:554:-21.0005,0,-268.309 dDocent_Contig_486 14 . T C 352.309 . AB=0.204545;ABP=69.7337;AC=2;AF=0.25;AN=8;AO=19;CIGAR=1X;DP=171;DPB=171;DPRA=1.77778;EPP=44.2683;EPPR=333.074;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=746;QR=5840;RO=152;RPL=0;RPP=44.2683;RPPR=333.074;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=152;SRP=333.074;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:55:41,14:41:1564:14:549:-33.1921,0,-124.459 0/1:33:29,4:29:1126:4:156:-4.48242,0,-91.6986 0/0:56:55,1:55:2102:1:41:0,-12.7631,-185.289 0/0:27:27,0:27:1048:0:0:0,-8.12781,-94.6155 dDocent_Contig_487 79 . A G 6503.48 . AB=0.481413;ABP=4.62478;AC=4;AF=0.5;AN=8;AO=259;CIGAR=1X2M1X1M1X;DP=538;DPB=538;DPRA=0;EPP=565.422;EPPR=582.793;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=2.77556e-17;PAIRED=0.949807;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=9049;QR=9553;RO=267;RPL=259;RPP=565.422;RPPR=582.793;RPR=0;RUN=1;SAF=259;SAP=565.422;SAR=0;SRF=267;SRP=582.793;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:231:114,113:114:4075:113:3953:-287.28,0,-298.236 0|1:120:65,54:65:2326:54:1900:-135.086,0,-173.406 0|1:134:60,68:60:2145:68:2368:-174.513,0,-154.446 0|1:53:28,24:28:1007:24:828:-58.957,0,-75.0661 dDocent_Contig_488 29 . A G 15419.9 . AB=0.0425101;ABP=901.068;AC=0;AF=0;AN=8;AO=21;CIGAR=1X2M1X1M1I1M2X;DP=588;DPB=590.75;DPRA=0;EPP=48.6112;EPPR=170.214;GTI=0;LEN=1;MEANALT=3.66667;MQM=21;MQMR=60;NS=4;NUMALT=3;ODDS=5.55112e-17;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=826;QR=3033;RO=77;RPL=0;RPP=48.6112;RPPR=170.214;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=77;SRP=170.214;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:163:14,139,9,0:14:555:139,9,0:5536,355,0:-451.813,0,-3.9567,-441.79,-31.613,-484.764,-456.028,-45.7999,-487.474,-501.713 0|0:227:47,168,10,0:47:1856:168,10,0:6615,392,0:-530.113,0,-102.269,-528.443,-137.046,-678.153,-544.261,-152.842,-681.164,-696.983 0|0:104:0,91,2,10:0:0:91,2,10:3615,79,408:-331.426,-33.8154,-6.42164,-328.263,-30.6761,-327.661,-297.762,0,-294.599,-294.752 0|0:94:16,74,0,3:16:622:74,0,3:2905,0,122:-234.123,0,-28.8663,-238.94,-51.1425,-290.049,-228.876,-41.0747,-279.985,-279.082 dDocent_Contig_489 23 . A C 3414.18 . AB=0.570732;ABP=11.9186;AC=4;AF=0.5;AN=8;AO=117;CIGAR=1X;DP=205;DPB=205;DPRA=0;EPP=257.073;EPPR=194.1;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4527;QR=3326;RO=88;RPL=0;RPP=257.073;RPPR=194.1;RPR=117;RUN=1;SAF=117;SAP=257.073;SAR=0;SRF=88;SRP=194.1;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:57:22,35:22:827:35:1367:-106.142,0,-57.5848 0/1:67:46,21:46:1761:21:827:-54.5801,0,-138.565 0/1:51:17,34:17:619:34:1321:-103.813,0,-40.6782 0/1:30:3,27:3:119:27:1012:-82.3419,0,-2.06428 dDocent_Contig_490 48 . G A 505.852 . AB=0.184397;ABP=124.998;AC=1;AF=0.125;AN=8;AO=30;CIGAR=1X;DP=395;DPB=395;DPRA=1.60294;EPP=59.7581;EPPR=752.763;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1202;QR=14255;RO=365;RPL=1;RPP=59.7581;RPPR=752.763;RPR=29;RUN=1;SAF=30;SAP=68.1545;SAR=0;SRF=365;SRP=795.598;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:116:114,2:114:4491:2:81:0,-27.2337,-396.465 0/1:141:115,26:115:4527:26:1044:-51.807,0,-364.946 0/0:68:68,0:68:2668:0:0:0,-20.47,-240.257 0/0:70:68,2:68:2569:2:77:0,-13.7639,-224.044 dDocent_Contig_491 26 . T C 420.196 . AB=0.172932;ABP=126.588;AC=2;AF=0.25;AN=8;AO=23;CIGAR=1X;DP=278;DPB=278;DPRA=0.917241;EPP=52.9542;EPPR=556.736;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=931;QR=10056;RO=255;RPL=0;RPP=52.9542;RPPR=556.736;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=255;SRP=556.736;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:83:83,0:83:3251:0:0:0,-24.9855,-292.649 0/0:62:62,0:62:2411:0:0:0,-18.6639,-217.148 0/1:61:45,16:45:1778:16:644:-39.9322,0,-141.881 0/1:72:65,7:65:2616:7:287:-4.53107,0,-213.889 dDocent_Contig_492 1 . N A 70.6404 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=2;CIGAR=1X2M1X;DP=3;DPB=3;DPRA=2;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=68;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:2:0,2:0:0:2:68:-6.45793,-0.60206,0 .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. 1|1:1:0,0:0:0:0:0:0,0,0 dDocent_Contig_493 17 . T C 13286.9 . AB=0.0278481;ABP=767.858;AC=0;AF=0;AN=8;AO=11;CIGAR=1X3M1X1M1X2M1X;DP=552;DPB=552;DPRA=0;EPP=26.8965;EPPR=272.273;GTI=0;LEN=1;MEANALT=2.33333;MQM=32;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=444;QR=4838;RO=124;RPL=0;RPP=26.8965;RPPR=272.273;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=124;SRP=272.273;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:172:19,3,150:19:748:3,150:121,6025:-490.816,-488.962,-549.59,0,-54.0364,-16.4468 0|0:157:29,0,128:29:1134:0,128:0,5130:-414.282,-423.012,-516.241,0,-93.6213,-55.0895 0|0:106:23,6,76:23:874:6,76:243,3020:-241.754,-233.521,-303.378,0,-56.5706,-48.8425 0|0:117:53,2,62:53:2082:2,62:80,2468:-187.328,-198.242,-368.876,0,-166.274,-152.65 dDocent_Contig_494 40 . A C 9501.47 . AB=0.427842;ABP=38.4222;AC=4;AF=0.5;AN=8;AO=335;CIGAR=1X;DP=783;DPB=783;DPRA=0;EPP=730.454;EPPR=971.487;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.993274;PAO=0;PQA=0;PQR=0;PRO=0;QA=13232;QR=17671;RO=446;RPL=0;RPP=730.454;RPPR=971.487;RPR=335;RUN=1;SAF=335;SAP=730.454;SAR=0;SRF=446;SRP=971.487;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:261:121,140:121:4772:140:5528:-418.804,0,-350.835 0/1:215:131,82:131:5251:82:3232:-226.428,0,-407.914 0/1:187:119,68:119:4732:68:2691:-186.02,0,-369.506 0/1:120:75,45:75:2916:45:1781:-124.384,0,-226.43 dDocent_Contig_496 107 . N T 191.513 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=6;CIGAR=1X;DP=6;DPB=6;DPRA=0;EPP=16.0391;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=7.66544;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=209;QR=0;RO=0;RPL=0;RPP=16.0391;RPPR=0;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:6:0,6:0:0:6:209:-19.1511,-1.80618,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_497 9 . G C 1151.07 . AB=0.192073;ABP=273.147;AC=4;AF=0.5;AN=8;AO=63;CIGAR=1X;DP=328;DPB=328;DPRA=0;EPP=139.813;EPPR=578.45;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.9962;NS=4;NUMALT=1;ODDS=0;PAIRED=0.952381;PAIREDR=0.973585;PAO=0;PQA=0;PQR=0;PRO=0;QA=2422;QR=10094;RO=265;RPL=0;RPP=139.813;RPPR=578.45;RPR=63;RUN=1;SAF=63;SAP=139.813;SAR=0;SRF=265;SRP=578.45;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:111:88,23:88:3371:23:888:-46.8251,0,-270.113 0/1:89:70,19:70:2677:19:732:-39.4183,0,-214.321 0/1:73:58,15:58:2195:15:574:-30.0257,0,-175.803 0/1:55:49,6:49:1851:6:228:-4.32681,0,-150.278 dDocent_Contig_498 26 . C A 113.559 . AB=0.166667;ABP=49.335;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X3M1I4M;DP=147;DPB=148.125;DPRA=1.45455;EPP=20.3821;EPPR=302.673;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=297;QR=5326;RO=138;RPL=0;RPP=20.3821;RPPR=302.673;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=138;SRP=302.673;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:47:47,0:47:1813:0:0:0,-14.1484,-163.413 0|1:48:39,8:39:1511:8:297:-12.5777,0,-121.755 0|0:36:36,0:36:1392:0:0:0,-10.8371,-125.557 0|0:16:16,0:16:610:0:0:0,-4.81648,-55.2356 dDocent_Contig_499 13 . G A 57.9077 . AB=0.181818;ABP=32.0291;AC=1;AF=0.125;AN=8;AO=10;CIGAR=2X;DP=146;DPB=146;DPRA=2.31818;EPP=24.725;EPPR=298.331;GTI=0;LEN=1;MEANALT=1;MQM=46.7;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.8;PAIREDR=0.963235;PAO=0;PQA=0;PQR=0;PRO=0;QA=392;QR=5388;RO=136;RPL=0;RPP=24.725;RPPR=298.331;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=136;SRP=298.331;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:33:27,6:27:1066:6:231:-6.71159,0,-86.2916 0|0:69:65,4:65:2569:4:161:0,-5.94208,-216.523 0|0:25:25,0:25:993:0:0:0,-7.52575,-89.6702 0|0:19:19,0:19:760:0:0:0,-5.71957,-68.7245 dDocent_Contig_501 15 . G A 59.294 . AB=0.3;ABP=6.48466;AC=2;AF=0.25;AN=8;AO=4;CIGAR=1X;DP=33;DPB=33;DPRA=2.41667;EPP=11.6962;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=59;MQMR=58.6897;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.965517;PAO=0;PQA=0;PQR=0;PRO=0;QA=158;QR=1170;RO=29;RPL=0;RPP=11.6962;RPPR=65.983;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:19:18,1:18:726:1:41:0,-1.625,-61.5695 0/0:4:4,0:4:163:0:0:0,-1.20412,-15.0584 0/1:8:6,2:6:240:2:77:-4.90059,0,-19.5669 0/1:2:1,1:1:41:1:40:-3.38717,0,-1.59254 dDocent_Contig_504 48 . C G 6712.39 . AB=0.8;ABP=53.8228;AC=6;AF=0.75;AN=8;AO=202;CIGAR=1X;DP=217;DPB=217;DPRA=0;EPP=433.005;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7777;QR=592;RO=15;RPL=1;RPP=433.005;RPPR=35.5824;RPR=201;RUN=1;SAF=202;SAP=441.648;SAR=0;SRF=15;SRP=35.5824;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:90:0,90:0:0:90:3462:-311.689,-27.0927,0 1/1:62:2,60:2:80:60:2316:-201.038,-11.0721,0 0/1:38:6,32:6:231:32:1240:-100.448,0,-9.71614 0/1:27:7,20:7:281:20:759:-60.5072,0,-17.5344 dDocent_Contig_505 38 . T C 3689.91 . AB=0.62963;ABP=30.596;AC=4;AF=0.5;AN=8;AO=119;CIGAR=1X;DP=189;DPB=189;DPRA=0;EPP=261.416;EPPR=155.013;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.966387;PAIREDR=0.942857;PAO=0;PQA=0;PQR=0;PRO=0;QA=4781;QR=2791;RO=70;RPL=0;RPP=261.416;RPPR=155.013;RPR=119;RUN=1;SAF=119;SAP=261.416;SAR=0;SRF=70;SRP=155.013;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:67:28,39:28:1120:39:1573:-121.636,0,-80.9135 0/1:61:20,41:20:778:41:1641:-129.543,0,-51.9735 0/1:35:17,18:17:688:18:718:-54.406,0,-51.7115 0/1:26:5,21:5:205:21:849:-68.895,0,-11.0082 dDocent_Contig_506 209 . N G 107.256 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.586;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=115;QR=0;RO=0;RPL=3;RPP=9.52472;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:115:-10.724,-0.90309,0 ./.:.:.:.:.:.:.:. dDocent_Contig_508 82 . T C 5907.82 . AB=0.798851;ABP=137.991;AC=5;AF=0.625;AN=8;AO=185;CIGAR=1X;DP=222;DPB=222;DPRA=0;EPP=292.333;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.924324;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7263;QR=1427;RO=37;RPL=185;RPP=404.733;RPPR=83.3548;RPR=0;RUN=1;SAF=171;SAP=292.333;SAR=14;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:78:22,56:22:843:56:2228:-177.213,0,-52.7086 0/1:57:7,50:7:272:50:1950:-158.546,0,-7.68852 1/1:48:2,46:2:78:46:1792:-154.092,-7.04597,0 0/1:39:6,33:6:234:33:1293:-104.898,0,-9.69093 dDocent_Contig_509 24 . G T 35.2814 . AB=0.136364;ABP=28.2783;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=78;DPB=78;DPRA=1.17857;EPP=9.52472;EPPR=165.871;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=2946;RO=75;RPL=0;RPP=9.52472;RPPR=165.871;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=75;SRP=165.871;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:23:23,0:23:905:0:0:0,-6.92369,-81.7606 0/0:26:26,0:26:1030:0:0:0,-7.82678,-92.9949 0/1:22:19,3:19:747:3:122:-4.74983,0,-60.933 0/0:7:7,0:7:264:0:0:0,-2.10721,-24.1174 dDocent_Contig_510 61 . A G 837.336 . AB=0.178571;ABP=279.408;AC=2;AF=0.25;AN=8;AO=61;CIGAR=1X;DP=526;DPB=526;DPRA=0;EPP=135.47;EPPR=1012.74;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2202;QR=17839;RO=465;RPL=61;RPP=135.47;RPPR=1012.74;RPR=0;RUN=1;SAF=61;SAP=135.47;SAR=0;SRF=465;SRP=1012.74;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:194:154,40:154:5957:40:1437:-71.204,0,-477.588 0/0:179:176,3:176:6756:3:117:0,-42.974,-596.935 0/1:114:99,15:99:3788:15:544:-14.9733,0,-306.653 0/0:39:36,3:36:1338:3:104:0,-2.03864,-110.982 dDocent_Contig_511 43 . G A 161.005 . AB=0.113095;ABP=221.45;AC=3;AF=0.375;AN=8;AO=21;CIGAR=1X;DP=224;DPB=224;DPRA=0;EPP=48.6112;EPPR=443.819;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=844;QR=8054;RO=203;RPL=0;RPP=48.6112;RPPR=443.819;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=203;SRP=443.819;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:120:110,10:110:4400:10:404:-0.596251,0,-359.819 0/0:56:54,2:54:2132:2:82:0,-9.078,-184.285 0/1:28:24,4:24:956:4:161:-6.44664,0,-77.9142 0/1:20:15,5:15:566:5:197:-12.0849,0,-45.2381 dDocent_Contig_512 9 . G A 425.245 . AB=0.153465;ABP=213.708;AC=3;AF=0.375;AN=8;AO=35;CIGAR=1X;DP=281;DPB=281;DPRA=0;EPP=79.0118;EPPR=535.021;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=0.95102;PAO=0;PQA=0;PQR=0;PRO=0;QA=1328;QR=9204;RO=245;RPL=0;RPP=79.0118;RPPR=535.021;RPR=35;RUN=1;SAF=35;SAP=79.0118;SAR=0;SRF=245;SRP=535.021;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:79:74,4:74:2786:4:151:0,-9.75043,-237.008 0/1:108:91,17:91:3447:17:640:-25.4221,0,-277.86 0/1:62:51,11:51:1903:11:420:-19.4884,0,-152.856 0/1:32:29,3:29:1068:3:117:-1.27742,0,-86.7935 dDocent_Contig_513 94 . A T 5380.21 . AB=0.721053;ABP=83.6519;AC=5;AF=0.625;AN=8;AO=189;CIGAR=1X;DP=242;DPB=242;DPRA=0;EPP=413.419;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.994709;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6645;QR=1830;RO=53;RPL=189;RPP=413.419;RPPR=118.098;RPR=0;RUN=1;SAF=189;SAP=413.419;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:52:0,52:0:0:52:1825:-164.528,-15.6536,0 0/1:62:8,54:8:271:54:1892:-151.888,0,-6.05336 0/1:95:39,56:39:1342:56:1988:-150.595,0,-92.4715 0/1:33:6,27:6:217:27:940:-74.9766,0,-9.9477 dDocent_Contig_514 129 . A G 83.7882 . AB=0.125;ABP=149.585;AC=2;AF=0.25;AN=8;AO=15;CIGAR=1X;DP=205;DPB=205;DPRA=1.41176;EPP=35.5824;EPPR=415.59;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=514;QR=6573;RO=190;RPL=0;RPP=35.5824;RPPR=415.59;RPR=15;RUN=1;SAF=0;SAP=35.5824;SAR=15;SRF=0;SRP=415.59;SRR=190;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:63:63,0:63:2199:0:0:0,-18.9649,-198.18 0/1:72:64,8:64:2175:8:263:-2.317,0,-174.339 0/1:48:41,7:41:1411:7:251:-8.48842,0,-112.832 0/0:22:22,0:22:788:0:0:0,-6.62266,-71.2449 dDocent_Contig_515 56 . G C 83.3075 . AB=0.132075;ABP=65.3275;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=194;DPB=194;DPRA=1.12766;EPP=18.2106;EPPR=409.076;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.989305;PAO=0;PQA=0;PQR=0;PRO=0;QA=276;QR=7428;RO=187;RPL=7;RPP=18.2106;RPPR=409.076;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=187;SRP=409.076;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:53:46,7:46:1825:7:276:-9.25157,0,-148.509 0/0:48:48,0:48:1899:0:0:0,-14.4494,-171.12 0/0:67:67,0:67:2669:0:0:0,-20.169,-240.333 0/0:26:26,0:26:1035:0:0:0,-7.82678,-93.4442 dDocent_Contig_516 109 . T C 345.242 . AB=0.115328;ABP=883.42;AC=1;AF=0.125;AN=8;AO=168;CIGAR=1X;DP=2050;DPB=2050;DPRA=0;EPP=367.818;EPPR=3955.09;GTI=0;LEN=1;MEANALT=2.25;MQM=57.0893;MQMR=45.289;NS=4;NUMALT=1;ODDS=1.11022e-16;PAIRED=1;PAIREDR=0.877473;PAO=0;PQA=0;PQR=0;PRO=0;QA=5387;QR=60333;RO=1820;RPL=0;RPP=367.818;RPPR=3955.09;RPR=168;RUN=1;SAF=0;SAP=367.818;SAR=168;SRF=0;SRP=3955.09;SRR=1820;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:685:578,79:578:19215:79:2591:-35.4451,0,-1484.9 0/0:644:585,43:585:19423:43:1347:0,-68.1092,-1563.06 0/0:437:399,21:399:13187:21:662:0,-68.1941,-1094.79 0/0:284:258,25:258:8508:25:787:0,-15.6581,-670.983 dDocent_Contig_521 12 . G A 2257.74 . AB=0.0543478;ABP=161.717;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X3M3X1M1X1M1X;DP=162;DPB=162;DPRA=0;EPP=18.2106;EPPR=163.699;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=1.38778e-17;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=267;QR=2904;RO=74;RPL=0;RPP=18.2106;RPPR=163.699;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=74;SRP=163.699;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:41:1,2,36:1:41:2,36:77,1411:-123.169,-117.149,-119.931,-7.45003,-4.52358,0 1|0:28:2,3,21:2:79:3,21:115,815:-69.3068,-60.4705,-66.0693,-2.93545,0,-3.12247 0|0:29:23,0,6:23:911:0,6:0,232:-12.5175,-19.4412,-94.4296,0,-75.3767,-73.5705 0|0:64:48,2,12:48:1873:2,12:75,476:-24.7443,-33.0534,-186.4,0,-147.82,-150.35 dDocent_Contig_522 98 . N T 517.522 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=21;CIGAR=1X;DP=21;DPB=21;DPRA=0;EPP=48.6112;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=6.77626e-21;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=560;QR=0;RO=0;RPL=21;RPP=48.6112;RPPR=0;RPR=0;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:43:-4.08417,-0.60206,0 1/1:10:0,10:0:0:10:275:-25.0207,-3.0103,0 1/1:9:0,9:0:0:9:242:-22.0444,-2.70927,0 ./.:.:.:.:.:.:.:. dDocent_Contig_528 15 . G T 50.6182 . AB=0.166667;ABP=26.1727;AC=2;AF=0.25;AN=8;AO=4;CIGAR=1X;DP=50;DPB=50;DPRA=0.923077;EPP=11.6962;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.847826;PAO=0;PQA=0;PQR=0;PRO=0;QA=155;QR=1844;RO=46;RPL=0;RPP=11.6962;RPPR=102.898;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:17,3:17:687:3:114:-4.61032,0,-56.1391 0/0:19:19,0:19:754:0:0:0,-5.71957,-68.1775 0/1:4:3,1:3:119:1:41:-2.89045,0,-9.89038 0/0:7:7,0:7:284:0:0:0,-2.10721,-25.9338 dDocent_Contig_529 70 . G A 1708.97 . AB=0.421687;ABP=11.8532;AC=1;AF=0.125;AN=8;AO=78;CIGAR=1X;DP=492;DPB=492;DPRA=1.06838;EPP=172.385;EPPR=902;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2750;QR=14982;RO=414;RPL=78;RPP=172.385;RPPR=902;RPR=0;RUN=1;SAF=78;SAP=172.385;SAR=0;SRF=414;SRP=902;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:117:117,0:117:4229:0:0:0,-35.2205,-380.767 0/1:166:96,70:96:3447:70:2465:-172.119,0,-260.451 0/0:118:115,3:115:4171:3:105:0,-25.7261,-365.75 0/0:91:86,5:86:3135:5:180:0,-10.8418,-265.807 dDocent_Contig_530 132 . A G 34.5696 . AB=0.176471;ABP=18.4661;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X2M1X;DP=85;DPB=85;DPRA=0.75;EPP=9.52472;EPPR=178.9;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=105;QR=2706;RO=81;RPL=0;RPP=9.52472;RPPR=178.9;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=178.9;SRR=81;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:32:32,0:32:1070:0:0:0,-9.63296,-96.6051 0|1:17:14,3:14:475:3:105:-4.67865,0,-37.9569 0|0:22:21,0:21:702:0:0:0,-6.32163,-63.1459 0|0:14:14,0:14:459:0:0:0,-4.21442,-41.6257 dDocent_Contig_531 83 . C T 1493.69 . AB=0.6;ABP=7.78754;AC=5;AF=0.625;AN=8;AO=54;CIGAR=1X;DP=76;DPB=76;DPRA=0;EPP=120.27;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.981481;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1873;QR=750;RO=22;RPL=54;RPP=120.27;RPPR=50.7827;RPR=0;RUN=1;SAF=54;SAP=120.27;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:4,17:4:134:17:591:-47.1957,0,-6.06925 0/1:14:8,6:8:269:6:206:-14.6623,0,-20.3232 1/1:21:0,21:0:0:21:727:-65.7519,-6.32163,0 0/1:20:10,10:10:347:10:349:-25.7262,0,-25.5447 dDocent_Contig_532 137 . T C 384.237 . AB=0.238636;ABP=55.2243;AC=1;AF=0.125;AN=8;AO=26;CIGAR=1X;DP=275;DPB=275;DPRA=1.24713;EPP=59.4686;EPPR=541.535;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=903;QR=8394;RO=248;RPL=0;RPP=59.4686;RPPR=541.535;RPR=26;RUN=1;SAF=0;SAP=59.4686;SAR=26;SRF=0;SRP=541.535;SRR=248;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:58:58,0:58:1963:0:0:0,-17.4597,-176.946 0/1:88:66,21:66:2238:21:730:-39.6456,0,-175.313 0/0:65:64,1:64:2187:1:35:0,-16.0683,-193.605 0/0:64:60,4:60:2006:4:138:0,-6.50547,-168.05 dDocent_Contig_533 1 . N G 145.627 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=150;QR=0;RO=0;RPL=0;RPP=11.6962;RPPR=0;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:109:-10.163,-0.90309,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:1:0,1:0:0:1:41:-4.09457,-0.30103,0 dDocent_Contig_536 9 . A G 35352 . AB=0.710231;ABP=652.168;AC=4;AF=0.5;AN=8;AO=1201;CIGAR=1X2M;DP=1691;DPB=1691;DPRA=0;EPP=2610.95;EPPR=643.595;GTI=0;LEN=1;MEANALT=3;MQM=55.8018;MQMR=58.8644;NS=4;NUMALT=2;ODDS=0;PAIRED=0.828476;PAIREDR=0.962712;PAO=0;PQA=0;PQR=0;PRO=0;QA=44779;QR=11399;RO=295;RPL=0;RPP=2610.95;RPPR=643.595;RPR=1201;RUN=1;SAF=1201;SAP=2610.95;SAR=0;SRF=295;SRP=643.595;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:569:92,54,421:92:3557:54,421:2095,15932:-1264.78,-1129.55,-1398.37,0,-122.162,-158.348 0|1:523:115,78,327:115:4440:78,327:2995,12045:-939.849,-740.379,-1081.23,0,-130.251,-265.895 0|1:349:52,29,268:52:2014:29,268:1143,9893:-786.475,-713.8,-867.985,0,-74.5942,-82.2428 0|1:250:36,29,185:36:1388:29,185:1123,6909:-549.587,-472.701,-576.054,0,-24.3681,-56.3964 dDocent_Contig_537 39 . T C 188.42 . AB=0.144654;ABP=177.397;AC=3;AF=0.375;AN=8;AO=31;CIGAR=1X;DP=249;DPB=249;DPRA=0;EPP=70.3259;EPPR=474.22;GTI=0;LEN=1;MEANALT=1.25;MQM=57.5806;MQMR=45.9263;NS=4;NUMALT=1;ODDS=0;PAIRED=0.903226;PAIREDR=0.516129;PAO=0;PQA=0;PQR=0;PRO=0;QA=1054;QR=7339;RO=217;RPL=0;RPP=70.3259;RPPR=474.22;RPR=31;RUN=1;SAF=0;SAP=70.3259;SAR=31;SRF=0;SRP=474.22;SRR=217;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:90:81,8:81:2726:8:280:0,-1.35271,-200.671 0/1:48:37,11:37:1256:11:368:-18.4191,0,-91.1131 0/1:70:63,7:63:2145:7:241:-0.954168,0,-164.08 0/1:41:36,5:36:1212:5:165:-2.83319,0,-81.6586 dDocent_Contig_538 9 . G A 400.011 . AB=0.152632;ABP=202.146;AC=3;AF=0.375;AN=8;AO=34;CIGAR=1X;DP=273;DPB=273;DPRA=0;EPP=76.8404;EPPR=521.992;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.0335;NS=4;NUMALT=1;ODDS=0;PAIRED=0.735294;PAIREDR=0.912134;PAO=0;PQA=0;PQR=0;PRO=0;QA=1304;QR=9157;RO=239;RPL=0;RPP=76.8404;RPPR=521.992;RPR=34;RUN=1;SAF=34;SAP=76.8404;SAR=0;SRF=239;SRP=521.992;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:81:65,16:65:2508:16:614:-31.2165,0,-199.552 0/0:83:78,5:78:2975:5:192:0,-7.33548,-250.089 0/1:82:72,10:72:2762:10:388:-10.5934,0,-219.4 0/1:27:24,3:24:912:3:110:-2.1318,0,-74.16 dDocent_Contig_539 1 . N G 666.671 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=19;CIGAR=1X;DP=19;DPB=19;DPRA=0;EPP=44.2683;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=0.684211;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=717;QR=0;RO=0;RPL=0;RPP=44.2683;RPPR=0;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:5:0,5:0:0:5:197:-18.1058,-1.50515,0 1/1:4:0,4:0:0:4:133:-12.2928,-1.20412,0 1/1:6:0,6:0:0:6:233:-21.3369,-1.80618,0 1/1:4:0,4:0:0:4:154:-14.2322,-1.20412,0 dDocent_Contig_540 157 . G A 320.58 . AB=0.219178;ABP=53.0137;AC=1;AF=0.125;AN=8;AO=16;CIGAR=1X;DP=178;DPB=178;DPRA=2.08571;EPP=37.7539;EPPR=354.789;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=607;QR=6156;RO=162;RPL=0;RPP=37.7539;RPPR=354.789;RPR=16;RUN=1;SAF=0;SAP=37.7539;SAR=16;SRF=0;SRP=354.789;SRR=162;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:73:57,16:57:2159:16:607:-32.9789,0,-172.549 0/0:48:48,0:48:1821:0:0:0,-14.4494,-164.121 0/0:27:27,0:27:1028:0:0:0,-8.12781,-92.8197 0/0:30:30,0:30:1148:0:0:0,-9.0309,-103.61 dDocent_Contig_541 71 . T A 38.9898 . AB=0.157895;ABP=22.325;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=54;DPB=54;DPRA=1.62857;EPP=9.52472;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.6;PAO=0;PQA=0;PQR=0;PRO=0;QA=113;QR=1889;RO=50;RPL=3;RPP=9.52472;RPPR=111.584;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:16,3:16:599:3:113:-4.81973,0,-48.5235 0/0:16:15,0:15:561:0:0:0,-4.51545,-50.4373 0/0:11:11,0:11:418:0:0:0,-3.31133,-37.9704 0/0:8:8,0:8:311:0:0:0,-2.40824,-28.3543 dDocent_Contig_542 106 . N G 63.6629 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=2X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=4.89285;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=67;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. 1|1:2:0,2:0:0:2:67:-6.36304,-0.60206,0 dDocent_Contig_543 16 . T C 60.9677 . AB=0.0567376;ABP=243.643;AC=2;AF=0.25;AN=8;AO=9;CIGAR=1X1M2X;DP=200;DPB=200.5;DPRA=0;EPP=22.5536;EPPR=240.278;GTI=0;LEN=1;MEANALT=4.25;MQM=60;MQMR=59.1469;NS=4;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=0.937063;PAO=0;PQA=0;PQR=0;PRO=0;QA=347;QR=5378;RO=143;RPL=0;RPP=22.5536;RPPR=313.531;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=134;SRP=240.278;SRR=9;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:80:53,8,8,5,2:53:1993:8,8,5,2:152,248,197,48:-1.84298,-8.71483,-169.643,0,-154.272,-160.965,-1.5592,-155.84,-147.162,-163.439,-14.6238,-168.877,-160.2,-161.77,-177.379 0|0:59:48,1,8,1,0:48:1810:1,8,1,0:19,201,40,0:0,-13.3164,-159.004,-0.952408,-145.791,-144.519,-11.1379,-156.009,-143.631,-156.845,-14.4494,-159.305,-146.927,-157.146,-160.442 0|0:35:24,0,2,1,6:24:897:0,2,1,6:0,29,33,188:-6.57331,-13.798,-87.3124,-12.3448,-85.8375,-85.2355,-11.1244,-84.6446,-83.1701,-84.3435,0,-73.5415,-72.0705,-70.8741,-71.7353 0|1:26:18,6,0,2,0:18:678:6,0,2,0:114,0,77,0:-1.25615,0,-53.7258,-6.67469,-55.532,-62.325,-0.296465,-49.209,-55.9981,-55.396,-6.67469,-55.532,-62.325,-55.9981,-62.325 dDocent_Contig_544 10 . G A 290.046 . AB=0.152174;ABP=148.027;AC=2;AF=0.25;AN=8;AO=29;CIGAR=1X;DP=280;DPB=280;DPRA=0;EPP=65.983;EPPR=545.878;GTI=0;LEN=1;MEANALT=1.25;MQM=44.3103;MQMR=59.652;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.9;PAO=0;PQA=0;PQR=0;PRO=0;QA=1144;QR=9856;RO=250;RPL=0;RPP=65.983;RPPR=545.878;RPR=29;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=250;SRP=545.878;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:105:91,14:91:3601:14:553:-17.2809,0,-292.511 0/0:95:89,6:89:3488:6:239:0,-8.00177,-293.328 0/0:47:45,2:45:1799:2:75:0,-7.47588,-155.398 0/1:33:25,7:25:968:7:277:-14.1674,0,-75.6411 dDocent_Contig_545 170 . C T 325.717 . AB=0.245614;ABP=35.049;AC=1;AF=0.125;AN=8;AO=14;CIGAR=1X;DP=122;DPB=122;DPRA=2.63077;EPP=33.4109;EPPR=237.529;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.990741;PAO=0;PQA=0;PQR=0;PRO=0;QA=559;QR=4255;RO=108;RPL=14;RPP=33.4109;RPPR=237.529;RPR=0;RUN=1;SAF=0;SAP=33.4109;SAR=14;SRF=0;SRP=237.529;SRR=108;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:57:43,14:43:1695:14:559:-33.4926,0,-135.616 0/0:21:21,0:21:831:0:0:0,-6.32163,-75.1017 0/0:20:20,0:20:773:0:0:0,-6.0206,-69.8732 0/0:24:24,0:24:956:0:0:0,-7.22472,-86.3364 dDocent_Contig_546 98 . N G 68 . AB=0;ABP=0;AC=2;AF=0.5;AN=4;AO=2;CIGAR=1X;DP=4;DPB=4;DPRA=3;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=70;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 0/0:1:0,0:0:0:0:0:0,0,0 1/1:3:0,2:0:0:2:70:-6.31749,-0.60206,0 dDocent_Contig_548 13 . C T 105.341 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X1M1X2M1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=57;MQMR=0;NS=1;NUMALT=1;ODDS=5.586;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=113;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. 1|1:3:0,3:0:0:3:113:-10.5325,-0.90309,0 dDocent_Contig_551 162 . A T 74.4142 . AB=0.3;ABP=6.48466;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=34;DPB=34;DPRA=1.25;EPP=9.52472;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=1213;RO=31;RPL=3;RPP=9.52472;RPPR=70.3259;RPR=0;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=70.3259;SRR=31;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:7,3:7:255:3:122:-8.36219,0,-20.2831 0/0:8:8,0:8:317:0:0:0,-2.40824,-28.8946 0/0:7:7,0:7:282:0:0:0,-2.10721,-25.7526 0/0:9:9,0:9:359:0:0:0,-2.70927,-32.6739 dDocent_Contig_552 7 . C T 8400.36 . AB=0.830409;ABP=165.16;AC=5;AF=0.625;AN=8;AO=267;CIGAR=1X;DP=298;DPB=298;DPRA=0;EPP=582.793;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=57.8989;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=10163;QR=1204;RO=31;RPL=0;RPP=582.793;RPPR=70.3259;RPR=267;RUN=1;SAF=267;SAP=582.793;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:127:2,125:2:78:125:4795:-413,-30.8273,0 0/1:84:12,72:12:468:72:2716:-218.927,0,-17.186 0/1:41:8,33:8:308:33:1269:-101.555,0,-15.74 0/1:46:9,37:9:350:37:1383:-110.52,0,-18.014 dDocent_Contig_553 24 . G A 1512.73 . AB=0.186937;ABP=380.983;AC=4;AF=0.5;AN=8;AO=83;CIGAR=1X;DP=444;DPB=444;DPRA=0;EPP=183.243;EPPR=786.912;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.687;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.98615;PAO=0;PQA=0;PQR=0;PRO=0;QA=3213;QR=14233;RO=361;RPL=0;RPP=183.243;RPPR=786.912;RPR=83;RUN=1;SAF=83;SAP=183.243;SAR=0;SRF=361;SRP=786.912;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:152:136,16:136:5338:16:642:-12.3582,0,-430.532 0/1:110:90,20:90:3588:20:737:-33.5194,0,-289.831 0/1:98:72,26:72:2838:26:1019:-62.5027,0,-226.026 0/1:84:63,21:63:2469:21:815:-48.382,0,-197.07 dDocent_Contig_554 204 . G T 534.687 . AB=0.184358;ABP=157.913;AC=1;AF=0.125;AN=8;AO=33;CIGAR=1X;DP=700;DPB=700;DPRA=1.03071;EPP=74.6689;EPPR=1451.38;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.97901;PAO=0;PQA=0;PQR=0;PRO=0;QA=1203;QR=24819;RO=667;RPL=33;RPP=74.6689;RPPR=1451.38;RPR=0;RUN=1;SAF=0;SAP=74.6689;SAR=33;SRF=0;SRP=1451.38;SRR=667;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:181:181,0:181:6685:0:0:0,-54.4864,-601.622 0/0:127:127,0:127:4751:0:0:0,-38.2308,-427.673 0/0:213:213,0:213:7925:0:0:0,-64.1194,-713.13 0/1:179:146,33:146:5458:33:1203:-54.6905,0,-437.364 dDocent_Contig_555 22 . A C 69.5138 . AB=0.116667;ABP=79.5909;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=286;DPB=286;DPRA=0.79646;EPP=18.2106;EPPR=608.851;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=284;QR=11019;RO=279;RPL=0;RPP=18.2106;RPPR=608.851;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=279;SRP=608.851;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:60:53,7:53:2114:7:284:-7.87219,0,-172.384 0/0:77:77,0:77:3039:0:0:0,-23.1793,-273.615 0/0:88:88,0:88:3473:0:0:0,-26.4906,-312.616 0/0:61:61,0:61:2393:0:0:0,-18.3628,-215.518 dDocent_Contig_556 9 . G T 180.565 . AB=0.144231;ABP=117.347;AC=1;AF=0.125;AN=8;AO=15;CIGAR=1X;DP=339;DPB=339;DPRA=1.32766;EPP=35.5824;EPPR=706.567;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=555;QR=12324;RO=324;RPL=0;RPP=35.5824;RPPR=706.567;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=324;SRP=706.567;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:104:89,15:89:3355:15:555:-18.9774,0,-270.788 0/0:94:94,0:94:3562:0:0:0,-28.2968,-320.708 0/0:87:87,0:87:3334:0:0:0,-26.1896,-300.204 0/0:54:54,0:54:2073:0:0:0,-16.2556,-186.801 dDocent_Contig_557 79 . C A 7924.06 . AB=0.579832;ABP=29.3599;AC=4;AF=0.5;AN=8;AO=276;CIGAR=1X;DP=476;DPB=476;DPRA=0;EPP=602.337;EPPR=437.305;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.996377;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=10449;QR=7645;RO=200;RPL=276;RPP=602.337;RPPR=437.305;RPR=0;RUN=1;SAF=276;SAP=602.337;SAR=0;SRF=200;SRP=437.305;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:151:68,83:68:2576:83:3134:-236.76,0,-186.583 0/1:133:52,81:52:2006:81:3047:-234.355,0,-140.738 0/1:101:39,62:39:1509:62:2360:-182.208,0,-105.678 0/1:91:41,50:41:1554:50:1908:-144.572,0,-112.728 dDocent_Contig_558 18 . C G 284.598 . AB=0.222222;ABP=51.2652;AC=2;AF=0.25;AN=8;AO=16;CIGAR=1M2I2M6D1M1X1M;DP=101;DPB=83;DPRA=0;EPP=37.7539;EPPR=105.07;GTI=0;LEN=1;MEANALT=2;MQM=21;MQMR=60;NS=4;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=336;QR=1855;RO=47;RPL=0;RPP=37.7539;RPPR=105.07;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:25:13,0,12,0,0:13:519:0,12,0,0:0,252,0,0:-12.1019,-16.0153,-58.8751,0,-43.1449,-39.5325,-16.0153,-58.8751,-43.1449,-58.8751,-16.0153,-58.8751,-43.1449,-58.8751,-58.8751 0|0:29:11,9,0,5,4:11:435:9,0,5,4:135,0,194,159:-11.39,-7.72882,-40.8748,-14.7013,-43.5841,-50.5717,0,-28.938,-35.9121,-34.4069,-8.36528,-37.2837,-44.2474,-29.5872,-43.0433 0|0:29:13,14,1,0,0:13:509:14,1,0,0:230,21,0,0:-8.88288,0,-37.7432,-11.4748,-40.652,-53.138,-12.7963,-41.9577,-53.4391,-54.7558,-12.7963,-41.9577,-53.4391,-54.7558,-54.7558 0|1:18:10,5,3,0,0:10:392:5,3,0,0:75,63,0,0:-0.970801,-0.0969136,-30.989,0,-28.5842,-31.5121,-3.9811,-32.4942,-32.4152,-36.3538,-3.9811,-32.4942,-32.4152,-36.3538,-36.3538 dDocent_Contig_560 187 . G A 252.311 . AB=0.189189;ABP=65.1027;AC=3;AF=0.375;AN=8;AO=14;CIGAR=1X;DP=100;DPB=100;DPRA=0.948718;EPP=33.4109;EPPR=189.757;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=551;QR=3437;RO=86;RPL=14;RPP=33.4109;RPPR=189.757;RPR=0;RUN=1;SAF=0;SAP=33.4109;SAR=14;SRF=0;SRP=189.757;SRR=86;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:26:26,0:26:1025:0:0:0,-7.82678,-92.5349 0/1:45:41,4:41:1642:4:156:-0.870395,0,-134.461 0/1:21:12,9:12:485:9:354:-25.8995,0,-37.6787 0/1:8:7,1:7:285:1:41:-1.68633,0,-23.6162 dDocent_Contig_561 109 . G A 1492.53 . AB=0.517544;ABP=3.31507;AC=3;AF=0.375;AN=8;AO=60;CIGAR=1X;DP=127;DPB=127;DPRA=0;EPP=133.299;EPPR=148.499;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2102;QR=2274;RO=67;RPL=0;RPP=133.299;RPPR=148.499;RPR=60;RUN=1;SAF=0;SAP=133.299;SAR=60;SRF=0;SRP=148.499;SRR=67;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:64:41,23:41:1370:23:802:-53.2328,0,-104.325 0/1:39:9,30:9:311:30:1065:-84.4225,0,-16.585 0/0:13:12,1:12:418:1:29:0,-1.01373,-35.0542 0/1:11:5,6:5:175:6:206:-15.5639,0,-12.7824 dDocent_Contig_562 36 . T A 223.977 . 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AB=0.868676;ABP=1099.79;AC=4;AF=0.5;AN=8;AO=807;CIGAR=1X;DP=929;DPB=929;DPRA=0;EPP=1755.39;EPPR=267.93;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=32077;QR=4823;RO=122;RPL=0;RPP=1755.39;RPPR=267.93;RPR=807;RUN=1;SAF=807;SAP=1755.39;SAR=0;SRF=122;SRP=267.93;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:362:44,318:44:1728:318:12684:-1031.67,0,-46.7673 0/1:221:30,191:30:1206:191:7524:-610.276,0,-42.2839 0/1:210:33,177:33:1310:177:7033:-569.419,0,-54.9466 0/1:136:15,121:15:579:121:4836:-394.194,0,-11.5038 dDocent_Contig_575 18 . T A 1998.28 . AB=0.138756;ABP=1187.5;AC=3;AF=0.375;AN=8;AO=158;CIGAR=1X;DP=1206;DPB=1206;DPRA=0;EPP=346.103;EPPR=2276.54;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.993671;PAIREDR=0.91404;PAO=0;PQA=0;PQR=0;PRO=0;QA=6267;QR=42058;RO=1047;RPL=0;RPP=346.103;RPPR=2276.54;RPR=158;RUN=1;SAF=158;SAP=346.103;SAR=0;SRF=1047;SRP=2276.54;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:400:348,52:348:13965:52:2041:-63.4564,0,-1135.34 0/1:356:307,49:307:12413:49:1990:-72.1157,0,-1009.03 0/1:289:244,44:244:9763:44:1723:-68.222,0,-790.958 0/0:161:148,13:148:5917:13:513:0,-1.95474,-485.796 dDocent_Contig_576 18 . C T 2878.61 . AB=0.223114;ABP=417.873;AC=4;AF=0.5;AN=8;AO=139;CIGAR=1M1D3M1X;DP=623;DPB=597.833;DPRA=0;EPP=304.845;EPPR=1021.43;GTI=0;LEN=1;MEANALT=2.75;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=5.55112e-17;PAIRED=0.992806;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5297;QR=18215;RO=469;RPL=0;RPP=304.845;RPPR=1021.43;RPR=139;RUN=1;SAF=139;SAP=304.845;SAR=0;SRF=469;SRP=1021.43;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:212:151,54:151:5865:54:2069:-124.341,0,-465.651 0|1:187:141,43:141:5513:43:1643:-92.4275,0,-440.388 0|1:102:88,13:88:3385:13:479:-12.6366,0,-273.945 0|1:122:89,29:89:3452:29:1106:-63.9455,0,-274.885 dDocent_Contig_577 50 . C A 986.074 . AB=0.20944;ABP=251.602;AC=3;AF=0.375;AN=8;AO=72;CIGAR=1X1M1X;DP=372;DPB=372;DPRA=0;EPP=159.356;EPPR=652.281;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2295;QR=10217;RO=299;RPL=72;RPP=159.356;RPPR=652.281;RPR=0;RUN=1;SAF=72;SAP=159.356;SAR=0;SRF=299;SRP=652.281;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:152:106,46:106:3630:46:1460:-85.9296,0,-281.17 0|1:133:116,16:116:3961:16:498:-5.30174,0,-316.896 0|1:54:45,9:45:1546:9:303:-11.3426,0,-123.178 0|0:33:32,1:32:1080:1:34:0,-6.53508,-94.1043 dDocent_Contig_578 20 . T A 1268.62 . AB=0.272251;ABP=89.062;AC=3;AF=0.375;AN=8;AO=53;CIGAR=1X;DP=214;DPB=214;DPRA=0;EPP=118.098;EPPR=352.617;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2123;QR=6476;RO=161;RPL=0;RPP=118.098;RPPR=352.617;RPR=53;RUN=1;SAF=53;SAP=118.098;SAR=0;SRF=161;SRP=352.617;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:103:72,31:72:2903:31:1254:-82.1204,0,-230.349 0/1:71:56,15:56:2250:15:611:-33.9543,0,-181.285 0/0:23:22,1:22:886:1:41:0,-2.82912,-75.9514 0/1:17:11,6:11:437:6:217:-14.7536,0,-34.5661 dDocent_Contig_579 30 . A G 239.871 . AB=0.11157;ABP=320.153;AC=1;AF=0.125;AN=8;AO=48;CIGAR=1X;DP=663;DPB=663;DPRA=0;EPP=107.241;EPPR=1336.29;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.9375;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1918;QR=24492;RO=614;RPL=0;RPP=107.241;RPPR=1336.29;RPR=48;RUN=1;SAF=48;SAP=107.241;SAR=0;SRF=614;SRP=1336.29;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:242:215,27:215:8544:27:1083:-24.9079,0,-695.643 0/0:186:174,11:174:6917:11:434:0,-16.5682,-582.813 0/0:87:84,3:84:3376:3:122:0,-14.8171,-292.512 0/0:148:141,7:141:5655:7:279:0,-19.0722,-483.27 dDocent_Contig_580 13 . T A 6949.79 . AB=0.197322;ABP=1370.1;AC=4;AF=0.5;AN=8;AO=339;CIGAR=1X;DP=1718;DPB=1718;DPRA=0;EPP=739.139;EPPR=2984.44;GTI=0;LEN=1;MEANALT=1.75;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.11022e-16;PAIRED=0.943953;PAIREDR=0.79898;PAO=0;PQA=0;PQR=0;PRO=0;QA=13514;QR=55061;RO=1373;RPL=0;RPP=739.139;RPPR=2984.44;RPR=339;RUN=1;SAF=339;SAP=739.139;SAR=0;SRF=1373;SRP=2984.44;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:529:436,93:436:17489:93:3679:-171.888,0,-1413.32 0/1:525:403,120:403:16129:120:4826:-276.61,0,-1292.7 0/1:405:323,81:323:12968:81:3210:-167.139,0,-1044.31 0/1:259:211,45:211:8475:45:1799:-84.8312,0,-684.962 dDocent_Contig_581 69 . G A 370.32 . AB=0.109127;ABP=671.841;AC=2;AF=0.25;AN=8;AO=75;CIGAR=1X;DP=792;DPB=792;DPRA=0;EPP=148.962;EPPR=1542.58;GTI=0;LEN=1;MEANALT=1.75;MQM=58.8267;MQMR=56.8434;NS=4;NUMALT=1;ODDS=0;PAIRED=0.96;PAIREDR=0.99859;PAO=0;PQA=0;PQR=0;PRO=0;QA=2869;QR=27631;RO=709;RPL=75;RPP=165.871;RPPR=1542.58;RPR=0;RUN=1;SAF=73;SAP=148.962;SAR=2;SRF=709;SRP=1542.58;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:269:243,23:243:9477:23:896:-0.508746,0,-750.188 0/1:235:203,32:203:7940:32:1254:-38.2435,0,-624.32 0/0:202:181,18:181:7020:18:638:0,-2.52029,-556.93 0/0:86:82,2:82:3194:2:81:0,-17.9824,-264.551 dDocent_Contig_584 98 . N C 3841.41 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=119;CIGAR=2X;DP=119;DPB=119.5;DPRA=0;EPP=261.416;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=59.5798;MQMR=0;NS=4;NUMALT=1;ODDS=4.33681e-19;PAIRED=1;PAIREDR=0;PAO=1;PQA=34;PQR=0;PRO=0;QA=4259;QR=0;RO=0;RPL=119;RPP=261.416;RPPR=0;RPR=0;RUN=1;SAF=119;SAP=261.416;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:43:0,43:0:0:43:1558:-139.767,-12.9443,0 1|1:31:0,31:0:0:31:1106:-99.8467,-9.33193,0 1|1:27:0,27:0:0:27:956:-86.3527,-8.12781,0 1|1:18:0,18:0:0:18:639:-57.5726,-5.41854,0 dDocent_Contig_586 26 . T G 1434.77 . AB=0.235955;ABP=164.7;AC=3;AF=0.375;AN=8;AO=63;CIGAR=1X;DP=396;DPB=396;DPRA=0.689922;EPP=139.813;EPPR=726.111;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2521;QR=13266;RO=333;RPL=0;RPP=139.813;RPPR=726.111;RPR=63;RUN=1;SAF=63;SAP=139.813;SAR=0;SRF=333;SRP=726.111;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:129:129,0:129:5116:0:0:0,-38.8329,-460.316 0/1:134:101,33:101:4036:33:1322:-78.8992,0,-322.877 0/1:101:75,26:75:2989:26:1041:-63.5775,0,-238.701 0/1:32:28,4:28:1125:4:158:-4.9664,0,-91.8966 dDocent_Contig_587 21 . T C 25649.1 . AB=0.694515;ABP=392.448;AC=4;AF=0.5;AN=8;AO=823;CIGAR=1X3M1X;DP=1185;DPB=1185;DPRA=0;EPP=1790.13;EPPR=723.939;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=32453;QR=13135;RO=332;RPL=0;RPP=1790.13;RPPR=723.939;RPR=823;RUN=1;SAF=823;SAP=1790.13;SAR=0;SRF=332;SRP=723.939;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:410:104,288:104:4127:288:11416:-908.349,0,-253.029 0|1:390:107,272:107:4222:272:10706:-848.448,0,-265.485 0|1:218:62,155:62:2445:155:6095:-482.635,0,-154.472 0|1:167:59,108:59:2341:108:4236:-330.963,0,-160.587 dDocent_Contig_588 21 . T C 73.4261 . AB=0.118644;ABP=77.5396;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=110;DPB=110;DPRA=2.4375;EPP=20.3821;EPPR=224.5;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=310;QR=3889;RO=102;RPL=0;RPP=20.3821;RPPR=224.5;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=102;SRP=224.5;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:59:52,7:52:1973:7:285:-8.26343,0,-160.031 0/0:19:18,1:18:687:1:25:0,-3.21971,-59.6593 0/0:19:19,0:19:732:0:0:0,-5.71957,-66.207 0/0:13:13,0:13:497:0:0:0,-3.91339,-45.073 dDocent_Contig_589 44 . C T 42.1902 . AB=0.253968;ABP=36.1339;AC=3;AF=0.375;AN=8;AO=19;CIGAR=2X;DP=88;DPB=88;DPRA=0;EPP=44.2683;EPPR=117.971;GTI=0;LEN=1;MEANALT=1.25;MQM=20.2105;MQMR=26.4853;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.985294;PAO=0;PQA=0;PQR=0;PRO=0;QA=695;QR=2656;RO=68;RPL=0;RPP=44.2683;RPPR=150.67;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=64;SRP=117.971;SRR=4;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:24:19,5:19:740:5:176:-1.82157,0,-27.2407 0|0:25:22,3:22:849:3:116:0,-0.0159795,-45.5583 0|1:31:23,8:23:910:8:290:-4.74573,0,-52.5525 0|1:8:4,3:4:157:3:113:-1.17461,0,-3.90751 dDocent_Contig_590 8 . T C 14384.9 . AB=0.642762;ABP=136.312;AC=4;AF=0.5;AN=8;AO=484;CIGAR=1X;DP=753;DPB=753;DPRA=0;EPP=1054;EPPR=587.136;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=18561;QR=10317;RO=269;RPL=0;RPP=1054;RPPR=587.136;RPR=484;RUN=1;SAF=484;SAP=1054;SAR=0;SRF=269;SRP=587.136;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:238:60,178:60:2323:178:6878:-547.239,0,-137.636 0/1:234:96,138:96:3689:138:5264:-403.321,0,-261.682 0/1:163:52,111:52:1961:111:4228:-331.531,0,-127.663 0/1:118:61,57:61:2344:57:2191:-161.891,0,-175.65 dDocent_Contig_591 14 . T C 2979.77 . AB=0.331378;ABP=87.2265;AC=4;AF=0.5;AN=8;AO=113;CIGAR=1X;DP=341;DPB=341;DPRA=0;EPP=248.387;EPPR=498.106;GTI=0;LEN=1;MEANALT=1;MQM=50.3451;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.995614;PAO=0;PQA=0;PQR=0;PRO=0;QA=4565;QR=9146;RO=228;RPL=0;RPP=248.387;RPPR=498.106;RPR=113;RUN=1;SAF=113;SAP=248.387;SAR=0;SRF=228;SRP=498.106;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:136:113,23:113:4520:23:934:-42.5111,0,-365.772 0/1:87:75,12:75:3012:12:477:-16.3777,0,-244.975 0/1:59:17,42:17:681:42:1704:-133.382,0,-43.8569 0/1:59:23,36:23:933:36:1450:-111.195,0,-66.5103 dDocent_Contig_592 95 . G A 290.102 . AB=0.230769;ABP=52.119;AC=1;AF=0.125;AN=8;AO=18;CIGAR=1X;DP=246;DPB=246;DPRA=1.39286;EPP=42.0968;EPPR=498.106;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.9123;NS=4;NUMALT=1;ODDS=0;PAIRED=0.944444;PAIREDR=0.79386;PAO=0;PQA=0;PQR=0;PRO=0;QA=590;QR=7557;RO=228;RPL=18;RPP=42.0968;RPPR=498.106;RPR=0;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=228;SRP=498.106;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:78:60,18:60:1986:18:590:-29.931,0,-155.53 0/0:63:63,0:63:2116:0:0:0,-18.9649,-190.713 0/0:65:65,0:65:2128:0:0:0,-19.5669,-191.786 0/0:40:40,0:40:1327:0:0:0,-12.0412,-119.693 dDocent_Contig_593 107 . N T 320.187 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=10;CIGAR=1X;DP=10;DPB=10;DPRA=0;EPP=24.725;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=10.438;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=352;QR=0;RO=0;RPL=0;RPP=24.725;RPPR=0;RPR=10;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:10:0,10:0:0:10:352:-32.0187,-3.0103,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_594 42 . T C 437.315 . AB=0.176471;ABP=126.656;AC=2;AF=0.25;AN=8;AO=29;CIGAR=1X;DP=258;DPB=258;DPRA=1.05376;EPP=65.983;EPPR=500.277;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1145;QR=9168;RO=229;RPL=0;RPP=65.983;RPPR=500.277;RPR=29;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=229;SRP=500.277;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:62:62,0:62:2504:0:0:0,-18.6639,-225.493 0/0:60:55,5:55:2201:5:185:0,-1.05625,-181.257 0/1:65:59,6:59:2329:6:241:-2.49973,0,-190.194 0/1:71:53,18:53:2134:18:719:-43.6639,0,-170.857 dDocent_Contig_595 37 . G A 3608.76 . AB=0.495968;ABP=3.04532;AC=4;AF=0.5;AN=8;AO=123;CIGAR=1X;DP=248;DPB=248;DPRA=0;EPP=270.101;EPPR=274.444;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.96;PAO=0;PQA=0;PQR=0;PRO=0;QA=4888;QR=4865;RO=125;RPL=0;RPP=270.101;RPPR=274.444;RPR=123;RUN=1;SAF=123;SAP=270.101;SAR=0;SRF=125;SRP=274.444;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:125:59,66:59:2310:66:2611:-197.501,0,-170.439 0/1:44:28,16:28:1068:16:634:-44.1507,0,-83.1528 0/1:59:27,32:27:1061:32:1283:-97.9713,0,-78.0115 0/1:20:11,9:11:426:9:360:-26.7423,0,-32.6679 dDocent_Contig_596 14 . T A 8209.32 . AB=0.638756;ABP=72.913;AC=4;AF=0.5;AN=8;AO=267;CIGAR=1X;DP=418;DPB=418;DPRA=0;EPP=582.793;EPPR=330.903;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=10575;QR=6007;RO=151;RPL=0;RPP=582.793;RPPR=330.903;RPR=267;RUN=1;SAF=267;SAP=582.793;SAR=0;SRF=151;SRP=330.903;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:183:49,134:49:1941:134:5245:-416.832,0,-119.801 0/1:134:40,94:40:1602:94:3784:-300.222,0,-104.074 0/1:63:43,20:43:1712:20:805:-53.8007,0,-135.338 0/1:38:19,19:19:752:19:741:-55.5662,0,-56.5602 dDocent_Contig_597 12 . G A 70.3098 . AB=0.181818;ABP=22.3561;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=267;DPB=267;DPRA=0.869369;EPP=18.2106;EPPR=567.593;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.571429;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=276;QR=10330;RO=260;RPL=0;RPP=18.2106;RPPR=567.593;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=260;SRP=567.593;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:120:119,1:119:4724:1:34:0,-32.7247,-421.68 0/0:74:74,0:74:2925:0:0:0,-22.2762,-263.342 0/0:51:49,2:49:1968:2:81:0,-7.6668,-169.626 0/1:22:18,4:18:713:4:161:-8.25282,0,-57.8686 dDocent_Contig_598 209 . N G 108.171 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.586;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=116;QR=0;RO=0;RPL=3;RPP=9.52472;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:116:-10.8155,-0.90309,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_599 13 . A G 75.1621 . AB=0.115385;ABP=103.232;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X;DP=547;DPB=547;DPRA=0.498934;EPP=22.5536;EPPR=1171.26;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.998141;PAO=0;PQA=0;PQR=0;PRO=0;QA=354;QR=21050;RO=538;RPL=0;RPP=22.5536;RPPR=1171.26;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=538;SRP=1171.26;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:163:163,0:163:6435:0:0:0,-49.0679,-578.922 0/0:193:193,0:193:7502:0:0:0,-58.0988,-674.865 0/0:113:113,0:113:4454:0:0:0,-34.0164,-400.829 0/1:78:69,9:69:2659:9:354:-8.73806,0,-215.976 dDocent_Contig_600 11 . C T 55058 . AB=0.53725;ABP=34.3949;AC=8;AF=1;AN=8;AO=1399;CIGAR=1X4M;DP=2604;DPB=2611.2;DPRA=0;EPP=3040.9;EPPR=836.856;GTI=0;LEN=1;MEANALT=7.75;MQM=59.9021;MQMR=59.9531;NS=4;NUMALT=2;ODDS=4.44089e-16;PAIRED=1;PAIREDR=0.994792;PAO=0;PQA=0;PQR=0;PRO=0;QA=55563;QR=15074;RO=384;RPL=0;RPP=3040.9;RPPR=836.856;RPR=1399;RUN=1;SAF=1399;SAP=3040.9;SAR=0;SRF=384;SRP=836.856;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:940:157,271,465:157:6183:271,465:10695,18498:-1845.56,-1014.02,-1441.07,-370.174,0,-738.83 1|1:791:110,213,437:110:4275:213,437:8392,17314:-1730.51,-1073.46,-1360.6,-338.905,0,-558.609 1|1:545:64,133,334:64:2527:133,334:5218,13253:-1292.36,-882.515,-1050.41,-221.181,0,-328.569 1|1:328:53,91,163:53:2089:91,163:3593,6498:-642.866,-363.187,-507.659,-123.776,0,-246.578 dDocent_Contig_603 40 . C G 143.614 . AB=0.135802;ABP=96.33;AC=1;AF=0.125;AN=8;AO=11;CIGAR=1X;DP=327;DPB=327;DPRA=0.987805;EPP=26.8965;EPPR=687.024;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=438;QR=12644;RO=315;RPL=0;RPP=26.8965;RPPR=687.024;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=315;SRP=687.024;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:81:69,11:69:2802:11:438:-15.2822,0,-227.779 0/0:84:84,0:84:3360:0:0:0,-25.2865,-302.442 0/0:94:94,0:94:3801:0:0:0,-28.2968,-342.074 0/0:68:68,0:68:2681:0:0:0,-20.47,-241.408 dDocent_Contig_604 16 . T C 1371.91 . AB=0.244;ABP=145.32;AC=4;AF=0.5;AN=8;AO=61;CIGAR=2X1M1X;DP=250;DPB=250;DPRA=0;EPP=135.47;EPPR=409.076;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2409;QR=7404;RO=187;RPL=0;RPP=135.47;RPPR=409.076;RPR=61;RUN=1;SAF=61;SAP=135.47;SAR=0;SRF=187;SRP=409.076;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:56:40,16:40:1594:16:644:-41.4376,0,-126.843 0|1:62:47,14:47:1858:14:558:-31.79,0,-148.664 0|1:71:57,13:57:2253:13:505:-24.3133,0,-181.467 0|1:61:43,18:43:1699:18:702:-45.1399,0,-134.782 dDocent_Contig_605 8 . T C 4299.41 . AB=0.337278;ABP=119.615;AC=4;AF=0.5;AN=8;AO=171;CIGAR=1X;DP=507;DPB=507;DPRA=0;EPP=374.332;EPPR=732.625;GTI=0;LEN=1;MEANALT=1;MQM=59.386;MQMR=60;NS=4;NUMALT=1;ODDS=2.77556e-17;PAIRED=0;PAIREDR=0.5;PAO=0;PQA=0;PQR=0;PRO=0;QA=6524;QR=12847;RO=336;RPL=0;RPP=374.332;RPPR=732.625;RPR=171;RUN=1;SAF=171;SAP=374.332;SAR=0;SRF=336;SRP=732.625;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:186:119,67:119:4521:67:2563:-174.86,0,-350.953 0/1:122:78,44:78:2981:44:1674:-114.115,0,-231.73 0/1:100:63,37:63:2413:37:1401:-96.2119,0,-187.276 0/1:99:76,23:76:2932:23:886:-50.2444,0,-234.246 dDocent_Contig_606 10 . A T 195.871 . AB=0.185185;ABP=26.2531;AC=1;AF=0.125;AN=8;AO=5;CIGAR=4M1X1M2X1M15I2M;DP=93;DPB=116.364;DPRA=1.8;EPP=13.8677;EPPR=72.4974;GTI=0;LEN=1;MEANALT=7;MQM=53;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=196;QR=1251;RO=32;RPL=0;RPP=13.8677;RPPR=72.4974;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:36:10,0,4,0:10:386:0,4,0:0,138,0:-7.77862,-10.7889,-42.5019,0,-31.7141,-30.51,-10.7889,-42.5019,-31.7141,-42.5019 0|1:27:6,2,0,5:6:238:2,0,5:69,0,196:-14.2519,-10.6045,-29.5981,-16.0581,-30.2002,-35.6545,0,-14.1449,-19.5985,-18.0933 0|0:19:11,0,0,0:11:431:0,0,0:0,0,0:0,-3.31133,-38.7718,-3.31133,-38.7718,-38.7718,-3.31133,-38.7718,-38.7718,-38.7718 0|0:11:5,0,0,0:5:196:0,0,0:0,0,0:0,-1.50515,-17.6222,-1.50515,-17.6222,-17.6222,-1.50515,-17.6222,-17.6222,-17.6222 dDocent_Contig_608 71 . G A 4862.01 . AB=0.475962;ABP=5.09825;AC=4;AF=0.5;AN=8;AO=198;CIGAR=1X;DP=416;DPB=416;DPRA=0;EPP=432.962;EPPR=476.391;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6842;QR=7508;RO=218;RPL=198;RPP=432.962;RPPR=476.391;RPR=0;RUN=1;SAF=198;SAP=432.962;SAR=0;SRF=218;SRP=476.391;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:123:61,62:61:2102:62:2152:-156.921,0,-152.422 0/1:125:56,69:56:1920:69:2363:-175.301,0,-135.441 0/1:104:77,27:77:2657:27:941:-53.6955,0,-208.069 0/1:64:24,40:24:829:40:1386:-105.772,0,-55.6596 dDocent_Contig_609 14 . C T 21918.1 . AB=0.0331325;ABP=1888.66;AC=0;AF=0;AN=8;AO=33;CIGAR=1X2M1X3M;DP=996;DPB=996;DPRA=0;EPP=74.6689;EPPR=137.642;GTI=0;LEN=1;MEANALT=9;MQM=60;MQMR=60;NS=4;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1300;QR=2460;RO=62;RPL=0;RPP=74.6689;RPPR=137.642;RPR=33;RUN=1;SAF=33;SAP=74.6689;SAR=0;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:342:6,5,38,163,108:6:236:5,38,163,108:199,1494,6416,4286:-859.308,-844.728,-862.636,-738.232,-741.26,-746.206,-333.382,-336.409,-229.914,-303.727,-508.319,-511.347,-404.851,0,-495.221 0|0:246:34,3,19,67,100:34:1357:3,19,67,100:115,747,2661,3929:-420.191,-420.988,-531.848,-368.987,-471.312,-475.031,-211.372,-313.698,-261.697,-302.967,-107.29,-209.615,-157.615,0,-188.95 0|0:247:16,15,12,105,77:16:633:15,12,105,77:593,464,4184,3002:-534.347,-490.364,-537.943,-501.055,-504.35,-549.537,-194.626,-197.921,-208.613,-215.113,-292.443,-295.738,-306.429,0,-321.357 0|0:161:6,10,6,67,59:6:234:10,6,67,59:393,239,2627,2294:-383.453,-352.935,-369.159,-365.579,-352.488,-383.006,-169.248,-156.157,-168.801,-168.313,-196.776,-183.685,-196.328,0,-198.249 dDocent_Contig_610 60 . T C 1273.27 . AB=0.314103;ABP=49.8362;AC=4;AF=0.5;AN=8;AO=49;CIGAR=1X;DP=156;DPB=156;DPRA=0;EPP=109.412;EPPR=235.358;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1982;QR=4320;RO=107;RPL=49;RPP=109.412;RPPR=235.358;RPR=0;RUN=1;SAF=49;SAP=109.412;SAR=0;SRF=107;SRP=235.358;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:56:34,22:34:1367:22:894:-63.908,0,-106.428 0/1:34:29,5:29:1173:5:202:-8.32706,0,-95.6093 0/1:24:15,9:15:608:9:364:-25.8997,0,-47.8326 0/1:42:29,13:29:1172:13:522:-34.6812,0,-93.1132 dDocent_Contig_611 8 . T A 915.261 . AB=0.288889;ABP=55.2704;AC=3;AF=0.375;AN=8;AO=39;CIGAR=1X;DP=170;DPB=170;DPRA=1.28571;EPP=87.6977;EPPR=287.473;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.969466;PAO=0;PQA=0;PQR=0;PRO=0;QA=1501;QR=5042;RO=131;RPL=0;RPP=87.6977;RPPR=287.473;RPR=39;RUN=1;SAF=39;SAP=87.6977;SAR=0;SRF=131;SRP=287.473;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:60:47,13:47:1817:13:500:-27.2861,0,-145.717 0/0:35:35,0:35:1361:0:0:0,-10.536,-122.773 0/1:35:30,5:30:1144:5:191:-7.02205,0,-92.7217 0/1:40:19,21:19:720:21:810:-61.1846,0,-53.0882 dDocent_Contig_612 8 . T C 2568.89 . AB=0.445498;ABP=8.45442;AC=4;AF=0.5;AN=8;AO=94;CIGAR=1X;DP=211;DPB=211;DPRA=0;EPP=207.129;EPPR=257.073;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=3607;QR=4505;RO=117;RPL=0;RPP=207.129;RPPR=257.073;RPR=94;RUN=1;SAF=94;SAP=207.129;SAR=0;SRF=117;SRP=257.073;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:48:23,25:23:892:25:974:-73.5232,0,-66.1498 0/1:67:30,37:30:1161:37:1415:-107.459,0,-84.6197 0/1:51:33,18:33:1262:18:689:-46.9913,0,-98.5205 0/1:45:31,14:31:1190:14:529:-34.4051,0,-93.8496 dDocent_Contig_613 25 . A T 267.798 . AB=0.228571;ABP=47.8047;AC=3;AF=0.375;AN=8;AO=16;CIGAR=1M7I5M2X1M9I2M1I1M1X;DP=104;DPB=124.923;DPRA=0.686275;EPP=37.7539;EPPR=191.928;GTI=0;LEN=1;MEANALT=1;MQM=38;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=600;QR=3401;RO=87;RPL=0;RPP=37.7539;RPPR=191.928;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=87;SRP=191.928;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:28:20,8:20:796:8:304:-17.1139,0,-63.5333 0|1:12:7,5:7:277:5:183:-12.093,0,-21.6881 0|1:30:27,3:27:1058:3:113:-0.716969,0,-86.4852 0|0:34:33,0:33:1270:0:0:0,-9.93399,-114.49 dDocent_Contig_614 42 . G T 205.516 . AB=0.189189;ABP=65.1027;AC=2;AF=0.25;AN=8;AO=14;CIGAR=1X;DP=122;DPB=122;DPRA=1.54167;EPP=33.4109;EPPR=237.529;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=495;QR=4232;RO=108;RPL=0;RPP=33.4109;RPPR=237.529;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=108;SRP=237.529;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:32:32,0:32:1266:0:0:0,-9.63296,-114.209 0/1:37:27,10:27:1074:10:353:-20.9698,0,-85.7985 0/1:37:33,4:33:1308:4:142:-1.98995,0,-106.848 0/0:16:16,0:16:584:0:0:0,-4.81648,-52.8619 dDocent_Contig_616 14 . C T 6852.05 . AB=0.612022;ABP=42.9037;AC=4;AF=0.5;AN=8;AO=224;CIGAR=1X;DP=366;DPB=366;DPRA=0;EPP=489.42;EPPR=311.359;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=8891;QR=5701;RO=142;RPL=0;RPP=489.42;RPPR=311.359;RPR=224;RUN=1;SAF=224;SAP=489.42;SAR=0;SRF=142;SRP=311.359;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:174:66,108:66:2628:108:4290:-333.667,0,-184.253 0/1:133:45,88:45:1823:88:3500:-275.005,0,-124.237 0/1:44:18,26:18:737:26:1020:-78.8495,0,-53.4066 0/1:15:13,2:13:513:2:81:-3.17028,0,-41.9942 dDocent_Contig_617 98 . N T 52.269 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=4.89285;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=55;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:55:-5.22366,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_618 71 . A C 4226.28 . AB=0.360262;ABP=80.6902;AC=4;AF=0.5;AN=8;AO=165;CIGAR=3M1X;DP=458;DPB=484;DPRA=0;EPP=361.303;EPPR=521.992;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.991632;PAO=0;PQA=0;PQR=0;PRO=0;QA=6112;QR=9174;RO=239;RPL=165;RPP=361.303;RPPR=521.992;RPR=0;RUN=1;SAF=165;SAP=361.303;SAR=0;SRF=239;SRP=521.992;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:154:76,20,58:76:2906:20,58:728,2156:-153.574,-116.999,-349.431,0,-179.01,-221.002 0|1:140:67,7,65:67:2576:7,65:237,2427:-178.567,-179.529,-388.904,0,-192.311,-191.95 0|1:98:60,13,24:60:2295:13,24:485,889:-54.683,-33.034,-217.456,0,-148.637,-181.118 0|1:66:36,12,18:36:1397:12,18:457,640:-41.2927,-14.6336,-125.826,0,-77.3045,-109.37 dDocent_Contig_619 29 . T A 6803.12 . AB=0.343624;ABP=161.248;AC=4;AF=0.5;AN=8;AO=256;CIGAR=1X;DP=745;DPB=745;DPRA=0;EPP=558.907;EPPR=1062.69;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=10103;QR=19362;RO=488;RPL=0;RPP=558.907;RPPR=1062.69;RPR=256;RUN=1;SAF=256;SAP=558.907;SAR=0;SRF=488;SRP=1062.69;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:214:136,77:136:5380:77:3025:-208.146,0,-419.839 0/1:208:137,71:137:5446:71:2787:-188.332,0,-427.373 0/1:179:119,60:119:4771:60:2391:-161.462,0,-375.4 0/1:144:96,48:96:3765:48:1900:-127.861,0,-295.521 dDocent_Contig_620 26 . T C 2001.75 . AB=0.373684;ABP=29.3423;AC=3;AF=0.375;AN=8;AO=71;CIGAR=1X2M1X1M1X;DP=190;DPB=190;DPRA=0;EPP=157.185;EPPR=235.358;GTI=0;LEN=1;MEANALT=2;MQM=59.0845;MQMR=60;NS=4;NUMALT=2;ODDS=2.77556e-17;PAIRED=0.760563;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2842;QR=4254;RO=107;RPL=0;RPP=157.185;RPPR=235.358;RPR=71;RUN=1;SAF=71;SAP=157.185;SAR=0;SRF=107;SRP=235.358;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:56:22,34,0:22:883:34,0:1364,0:-106.114,0,-62.9226,-112.736,-73.1576,-185.493 0|1:56:25,24,5:25:985:24,5:955,186:-71.0877,0,-73.8354,-63.3975,-65.8435,-142.928 0|0:46:37,4,5:37:1474:4,5:163,200:-5.33239,-3.01987,-123.194,0,-107.923,-119.866 0|1:32:23,9,0:23:912:9,0:360,0:-23.1308,0,-72.7564,-30.0545,-75.4656,-105.122 dDocent_Contig_621 124 . A T 501.614 . AB=0.238532;ABP=67.7361;AC=1;AF=0.125;AN=8;AO=39;CIGAR=1X;DP=568;DPB=568;DPRA=0.679144;EPP=87.6977;EPPR=1147.38;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1398;QR=18631;RO=527;RPL=0;RPP=87.6977;RPPR=1147.38;RPR=39;RUN=1;SAF=0;SAP=87.6977;SAR=39;SRF=0;SRP=1147.38;SRR=527;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:187:185,0:185:6482:0:0:0,-55.6905,-583.223 0/0:119:116,3:116:4120:3:107:0,-25.8408,-360.985 0/0:153:143,10:143:5056:10:359:0,-13.4052,-422.519 0/1:109:83,26:83:2973:26:932:-51.3832,0,-234.977 dDocent_Contig_622 67 . G A 618.323 . AB=0.17619;ABP=194.265;AC=3;AF=0.375;AN=8;AO=37;CIGAR=1X;DP=250;DPB=250;DPRA=1.75;EPP=83.3548;EPPR=465.534;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.9859;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=0.985915;PAO=0;PQA=0;PQR=0;PRO=0;QA=1422;QR=7975;RO=213;RPL=37;RPP=83.3548;RPPR=465.534;RPR=0;RUN=1;SAF=37;SAP=83.3548;SAR=0;SRF=213;SRP=465.534;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:67:51,16:51:1937:16:614:-35.4238,0,-154.394 0/0:40:40,0:40:1500:0:0:0,-12.0412,-135.276 0/1:79:69,10:69:2593:10:393:-11.9454,0,-209.783 0/1:64:53,11:53:1945:11:415:-18.4296,0,-156.014 dDocent_Contig_623 181 . C T 2762.24 . AB=0.573171;ABP=10.6369;AC=4;AF=0.5;AN=8;AO=94;CIGAR=1X2M1X1M1X;DP=164;DPB=164;DPRA=0;EPP=207.129;EPPR=152.842;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3664;QR=2687;RO=69;RPL=94;RPP=207.129;RPPR=152.842;RPR=0;RUN=1;SAF=0;SAP=207.129;SAR=94;SRF=0;SRP=152.842;SRR=69;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:41:22,19:22:869:19:742:-54.766,0,-66.1841 0|1:80:21,59:21:799:59:2307:-183.741,0,-48.1453 0|1:30:19,11:19:743:11:429:-29.9331,0,-58.1682 0|1:13:7,5:7:276:5:186:-13.2738,0,-21.3892 dDocent_Contig_624 8 . T G 1006.67 . AB=0.175747;ABP=522.641;AC=3;AF=0.375;AN=8;AO=125;CIGAR=1X;DP=837;DPB=837;DPRA=0;EPP=274.444;EPPR=1549.1;GTI=0;LEN=1;MEANALT=1;MQM=36.904;MQMR=59.0997;NS=4;NUMALT=1;ODDS=5.55112e-17;PAIRED=0.512;PAIREDR=0.97191;PAO=0;PQA=0;PQR=0;PRO=0;QA=4872;QR=27417;RO=712;RPL=0;RPP=274.444;RPPR=1549.1;RPR=125;RUN=1;SAF=125;SAP=274.444;SAR=0;SRF=712;SRP=1549.1;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:268:243,25:243:9378:25:982:0,-11.6787,-772.274 0/1:232:194,38:194:7442:38:1486:-39.4082,0,-594.78 0/1:204:171,33:171:6571:33:1273:-34.8816,0,-527.855 0/1:133:104,29:104:4026:29:1131:-30.3433,0,-306.769 dDocent_Contig_625 109 . A G 398.298 . AB=0.255814;ABP=47.5507;AC=3;AF=0.375;AN=8;AO=22;CIGAR=1X;DP=119;DPB=119;DPRA=0.868687;EPP=50.7827;EPPR=213.643;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=763;QR=3377;RO=97;RPL=0;RPP=50.7827;RPPR=213.643;RPR=22;RUN=1;SAF=0;SAP=50.7827;SAR=22;SRF=0;SRP=213.643;SRR=97;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:32:27,5:27:945:5:175:-6.46073,0,-75.7336 0/0:33:33,0:33:1150:0:0:0,-9.93399,-103.809 0/1:35:25,10:25:865:10:348:-21.12,0,-67.6312 0/1:19:12,7:12:417:7:240:-16.2156,0,-32.1438 dDocent_Contig_626 113 . T A 488.146 . AB=0.265306;ABP=49.8964;AC=2;AF=0.25;AN=8;AO=38;CIGAR=1X1M1X;DP=234;DPB=234;DPRA=0;EPP=85.5263;EPPR=426.447;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1280;QR=6480;RO=195;RPL=0;RPP=85.5263;RPPR=426.447;RPR=38;RUN=1;SAF=0;SAP=85.5263;SAR=38;SRF=0;SRP=426.447;SRR=195;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:67:46,21:46:1538:21:717:-44.68,0,-118.539 0|0:54:49,4:49:1597:4:139:0,-3.22737,-131.208 0|0:82:74,8:74:2497:8:251:0,-1.7876,-202.094 0|1:31:26,5:26:848:5:173:-6.57823,0,-67.2899 dDocent_Contig_627 35 . A C 3682.4 . AB=0.283401;ABP=204.315;AC=4;AF=0.5;AN=8;AO=140;CIGAR=6M1X5M;DP=494;DPB=489.667;DPRA=0;EPP=307.016;EPPR=621.88;GTI=0;LEN=1;MEANALT=5.25;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.992857;PAIREDR=0.996491;PAO=0;PQA=0;PQR=0;PRO=0;QA=5580;QR=11143;RO=285;RPL=0;RPP=307.016;RPPR=621.88;RPR=140;RUN=1;SAF=140;SAP=307.016;SAR=0;SRF=285;SRP=621.88;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:124:69,9,45:69:2685:9,45:355,1796:-127.149,-118.712,-336.648,0,-191.452,-207.114 0|1:219:129,24,57:129:5037:24,57:909,2257:-146.904,-111.228,-518.067,0,-339.567,-396.919 0|1:76:43,12,19:43:1689:12,19:446,770:-50.5673,-27.0348,-162.328,0,-102.442,-133.207 0|1:75:44,7,19:44:1732:7,19:284,757:-49.1091,-38.9273,-179.307,0,-119.077,-136.781 dDocent_Contig_628 49 . G A 93.0731 . AB=0.111111;ABP=144.88;AC=1;AF=0.125;AN=8;AO=12;CIGAR=1X;DP=197;DPB=197;DPRA=3.64045;EPP=29.068;EPPR=404.733;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.994595;PAO=0;PQA=0;PQR=0;PRO=0;QA=471;QR=7379;RO=185;RPL=0;RPP=29.068;RPPR=404.733;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=185;SRP=404.733;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:108:96,12:96:3817:12:471:-10.2281,0,-311.032 0/0:21:21,0:21:852:0:0:0,-6.32163,-76.9908 0/0:32:32,0:32:1278:0:0:0,-9.63296,-115.29 0/0:36:36,0:36:1432:0:0:0,-10.8371,-129.136 dDocent_Contig_629 48 . A G 198.796 . AB=0.142857;ABP=119.339;AC=1;AF=0.125;AN=8;AO=26;CIGAR=1X;DP=393;DPB=393;DPRA=0.868502;EPP=59.4686;EPPR=799.941;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1009;QR=14244;RO=367;RPL=0;RPP=59.4686;RPPR=799.941;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=367;SRP=799.941;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:109:109,0:109:4216:0:0:0,-32.8123,-379.452 0/0:132:124,8:124:4828:8:308:0,-11.66,-406.387 0/1:105:90,15:90:3505:15:582:-21.1014,0,-283.919 0/0:47:44,3:44:1695:3:119:0,-3.05391,-141.674 dDocent_Contig_630 18 . T C 746.852 . AB=0.164474;ABP=300.273;AC=4;AF=0.5;AN=8;AO=50;CIGAR=1M1X2M;DP=304;DPB=298.75;DPRA=0;EPP=111.584;EPPR=448.922;GTI=0;LEN=1;MEANALT=2.75;MQM=56.1;MQMR=57.0833;NS=4;NUMALT=1;ODDS=0;PAIRED=0.52;PAIREDR=0.45;PAO=0;PQA=0;PQR=0;PRO=0;QA=1866;QR=9434;RO=240;RPL=0;RPP=111.584;RPPR=524.164;RPR=50;RUN=1;SAF=50;SAP=111.584;SAR=0;SRF=231;SRP=448.922;SRR=9;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:80:68,10:68:2660:10:376:-10.3119,0,-212.751 0|1:76:53,19:53:2059:19:702:-41.1096,0,-160.767 0|1:103:81,14:81:3217:14:527:-18.7303,0,-260.101 0|1:45:38,7:38:1498:7:261:-10.0227,0,-120.135 dDocent_Contig_631 13 . C A 59.4804 . AB=0.10596;ABP=206.654;AC=1;AF=0.125;AN=8;AO=16;CIGAR=1X;DP=588;DPB=588;DPRA=1.03661;EPP=37.7539;EPPR=1201.66;GTI=0;LEN=1;MEANALT=3;MQM=40.125;MQMR=54.3714;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.896739;PAO=0;PQA=0;PQR=0;PRO=0;QA=625;QR=21896;RO=552;RPL=0;RPP=37.7539;RPPR=1201.66;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=552;SRP=1201.66;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:268:256,0:256:10098:0:0:0,-77.0637,-869.218 0/1:151:130,16:130:5185:16:625:-7.16989,0,-393.567 0/0:97:95,0:95:3789:0:0:0,-28.5978,-323.102 0/0:72:71,0:71:2824:0:0:0,-21.3731,-227.935 dDocent_Contig_633 77 . C T 100.436 . AB=0.111588;ABP=308.331;AC=2;AF=0.25;AN=8;AO=29;CIGAR=1X;DP=546;DPB=546;DPRA=0.563218;EPP=65.983;EPPR=1125.66;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1020;QR=18779;RO=517;RPL=29;RPP=65.983;RPPR=1125.66;RPR=0;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=517;SRP=1125.66;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:203:203,0:203:7392:0:0:0,-61.1091,-665.281 0/1:148:130,18:130:4750:18:616:-11.2028,0,-383.076 0/0:110:107,3:107:3874:3:109:0,-22.9453,-338.666 0/1:85:77,8:77:2763:8:295:-1.31576,0,-223.308 dDocent_Contig_634 1 . N G 109.118 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.586;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=117;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:117:-10.9102,-0.90309,0 ./.:.:.:.:.:.:.:. dDocent_Contig_635 13 . G A 18525.3 . AB=0.704545;ABP=338.799;AC=4;AF=0.5;AN=8;AO=651;CIGAR=1X;DP=924;DPB=924;DPRA=0;EPP=1416.64;EPPR=595.822;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.995392;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=23732;QR=10848;RO=273;RPL=0;RPP=1416.64;RPPR=595.822;RPR=651;RUN=1;SAF=651;SAP=1416.64;SAR=0;SRF=273;SRP=595.822;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:196:50,146:50:1979:146:5339:-421.609,0,-119.312 0/1:279:86,193:86:3432:193:7064:-551.787,0,-224.942 0/1:238:68,170:68:2738:170:6133:-480.393,0,-174.879 0/1:211:69,142:69:2699:142:5196:-404.23,0,-179.519 dDocent_Contig_636 27 . T C 3199.11 . AB=0.251407;ABP=289.111;AC=4;AF=0.5;AN=8;AO=134;CIGAR=1X;DP=533;DPB=533;DPRA=0;EPP=293.988;EPPR=869.428;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5387;QR=16013;RO=399;RPL=0;RPP=293.988;RPPR=869.428;RPR=134;RUN=1;SAF=134;SAP=293.988;SAR=0;SRF=399;SRP=869.428;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:161:106,55:106:4244:55:2222:-151.675,0,-333.441 0/1:149:112,37:112:4483:37:1496:-90.0276,0,-358.543 0/1:136:108,28:108:4338:28:1118:-59.9596,0,-349.424 0/1:87:73,14:73:2948:14:551:-23.738,0,-239.211 dDocent_Contig_637 75 . G C 132.464 . AB=0.169492;ABP=58.9901;AC=1;AF=0.125;AN=8;AO=20;CIGAR=1X;DP=279;DPB=279;DPRA=0;EPP=46.4397;EPPR=565.422;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.996139;PAO=0;PQA=0;PQR=0;PRO=0;QA=684;QR=8886;RO=259;RPL=20;RPP=46.4397;RPPR=565.422;RPR=0;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=259;SRP=565.422;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:59:49,10:49:1685:10:351:-14.1672,0,-134.178 0/0:74:70,4:70:2412:4:126:0,-10.6254,-205.693 0/0:88:83,5:83:2848:5:171:0,-10.7643,-240.846 0/0:58:57,1:57:1941:1:36:0,-13.8615,-171.372 dDocent_Contig_638 15 . T C 5228.57 . AB=0.223292;ABP=694.005;AC=4;AF=0.5;AN=8;AO=232;CIGAR=1X;DP=1039;DPB=1039;DPRA=0;EPP=506.792;EPPR=1753.22;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.99569;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=9337;QR=32305;RO=806;RPL=0;RPP=506.792;RPPR=1753.22;RPR=232;RUN=1;SAF=232;SAP=506.792;SAR=0;SRF=806;SRP=1753.22;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:300:258,42:258:10359:42:1699:-62.8189,0,-841.264 0/1:324:270,54:270:10796:54:2176:-98.4713,0,-873.368 0/1:238:158,79:158:6366:79:3192:-215.876,0,-501.202 0/1:177:120,57:120:4784:57:2270:-151.18,0,-377.18 dDocent_Contig_639 29 . T C 741.477 . AB=0.155172;ABP=302.524;AC=2;AF=0.25;AN=8;AO=59;CIGAR=1X;DP=667;DPB=667;DPRA=0.990079;EPP=131.127;EPPR=1321.09;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.995058;PAO=0;PQA=0;PQR=0;PRO=0;QA=2377;QR=24211;RO=607;RPL=0;RPP=131.127;RPPR=1321.09;RPR=59;RUN=1;SAF=59;SAP=131.127;SAR=0;SRF=607;SRP=1321.09;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:168:168,0:168:6711:0:0:0,-50.573,-603.686 0/0:209:195,14:195:7745:14:562:0,-11.9929,-645.729 0/1:192:160,31:160:6408:31:1246:-54.5404,0,-518.587 0/1:98:84,14:84:3347:14:569:-22.051,0,-271.785 dDocent_Contig_640 16 . C T 648.49 . AB=0.0833333;ABP=111.584;AC=0;AF=0;AN=8;AO=6;CIGAR=1X3M1X;DP=191;DPB=191;DPRA=0.473684;EPP=4.45795;EPPR=301.41;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.666667;PAIREDR=0.882353;PAO=0;PQA=0;PQR=0;PRO=0;QA=230;QR=5953;RO=153;RPL=0;RPP=16.0391;RPPR=335.246;RPR=6;RUN=1;SAF=4;SAP=4.45795;SAR=2;SRF=149;SRP=301.41;SRR=4;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:44:30,5,9:30:1177:5,9:189,364:-20.9971,-14.5467,-109.823,0,-81.3139,-94.0934 0|0:76:72,0,4:72:2758:0,4:0,163:0,-21.6742,-247.973,-7.81985,-234.524,-233.32 0|0:43:34,0,9:34:1343:0,9:0,355:-19.3651,-29.6001,-140.113,0,-110.907,-108.198 0|0:28:17,1,10:17:675:1,10:41,407:-28.4534,-30.1866,-85.4491,0,-52.1729,-52.5474 dDocent_Contig_641 28 . A G 65.6682 . AB=0.1125;ABP=107.35;AC=2;AF=0.25;AN=8;AO=12;CIGAR=1X;DP=182;DPB=182;DPRA=1.01481;EPP=29.068;EPPR=352.823;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=0.833333;PAIREDR=0.952663;PAO=0;PQA=0;PQR=0;PRO=0;QA=480;QR=6688;RO=169;RPL=0;RPP=29.068;RPPR=369.989;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=167;SRP=352.823;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:45:45,0:45:1769:0:0:0,-13.5463,-159.418 0/1:21:19,2:19:769:2:82:-1.45805,0,-63.2089 0/1:59:51,7:51:2031:7:280:-7.70397,0,-165.12 0/0:57:54,3:54:2119:3:118:0,-6.15651,-179.905 dDocent_Contig_642 218 . N G 385.305 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=32;CIGAR=1X;DP=32;DPB=32;DPRA=0;EPP=72.4974;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=13;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1264;QR=0;RO=0;RPL=32;RPP=72.4974;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=72.4974;SAR=32;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:5:0,5:0:0:5:201:-5.97633,-1.50515,0 1/1:14:0,14:0:0:14:552:-16.4939,-4.21442,0 1/1:10:0,10:0:0:10:388:-11.8195,-3.0103,0 1/1:3:0,3:0:0:3:123:-3.63817,-0.90309,0 dDocent_Contig_643 20 . G T 467.2 . AB=0.178082;ABP=134.429;AC=1;AF=0.125;AN=8;AO=29;CIGAR=1X2M1D11M1X1M1X;DP=678;DPB=676.278;DPRA=0.690773;EPP=65.983;EPPR=1373.21;GTI=0;LEN=1;MEANALT=5;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1114;QR=24622;RO=631;RPL=0;RPP=65.983;RPPR=1373.21;RPR=29;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=631;SRP=1373.21;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:247:243,0:243:9459:0:0:0,-73.1503,-850.715 0|0:154:148,0:148:5784:0:0:0,-44.5524,-520.049 0|1:146:115,26:115:4498:26:1005:-47.9419,0,-362.012 0|0:131:125,3:125:4881:3:109:0,-28.6875,-429.129 dDocent_Contig_644 7 . T G 33492.4 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=1178;CIGAR=1X;DP=1233;DPB=1233;DPRA=0;EPP=2561;EPPR=115.927;GTI=0;LEN=1;MEANALT=1.75;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=0.999151;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=37991;QR=771;RO=52;RPL=0;RPP=2561;RPPR=115.927;RPR=1178;RUN=1;SAF=1178;SAP=2561;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:355:18,337:18:282:337:11009:-965.055,-81.3302,0 1/1:341:12,328:12:190:328:10539:-931.056,-85.2062,0 1/1:214:10,203:10:118:203:6350:-560.778,-53.4922,0 1/1:323:12,310:12:181:310:10093:-891.753,-80.8445,0 dDocent_Contig_645 33 . C A 3104.46 . AB=0.352584;ABP=65.1118;AC=3;AF=0.375;AN=8;AO=132;CIGAR=1X;DP=539;DPB=539;DPRA=0;EPP=289.645;EPPR=886.8;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=2.77556e-17;PAIRED=1;PAIREDR=0.997543;PAO=0;PQA=0;PQR=0;PRO=0;QA=5230;QR=16232;RO=407;RPL=0;RPP=289.645;RPPR=886.8;RPR=132;RUN=1;SAF=132;SAP=289.645;SAR=0;SRF=407;SRP=886.8;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:210:194,16:194:7783:16:644:0,-4.9232,-641.749 0/1:169:86,83:86:3395:83:3294:-245.642,0,-254.723 0/1:103:80,23:80:3202:23:903:-50.5671,0,-257.239 0/1:57:47,10:47:1852:10:389:-18.2036,0,-149.731 dDocent_Contig_646 15 . T G 1342.92 . AB=0.168889;ABP=431.533;AC=4;AF=0.5;AN=8;AO=76;CIGAR=1X;DP=450;DPB=450;DPRA=0;EPP=168.042;EPPR=815.141;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.997326;PAO=0;PQA=0;PQR=0;PRO=0;QA=3044;QR=14935;RO=374;RPL=0;RPP=168.042;RPPR=815.141;RPR=76;RUN=1;SAF=76;SAP=168.042;SAR=0;SRF=374;SRP=815.141;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:115:89,26:89:3568:26:1042:-59.4546,0,-286.526 0/1:139:115,24:115:4595:24:956:-44.4932,0,-371.633 0/1:117:99,18:99:3938:18:718:-29.7244,0,-319.192 0/1:79:71,8:71:2834:8:328:-6.10897,0,-231.386 dDocent_Contig_647 35 . C T 115.67 . AB=0.128205;ABP=96.662;AC=1;AF=0.125;AN=8;AO=14;CIGAR=1X;DP=293;DPB=293;DPRA=0.986486;EPP=33.4109;EPPR=608.851;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=554;QR=11118;RO=279;RPL=0;RPP=33.4109;RPPR=608.851;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=279;SRP=608.851;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:78:77,1:77:3036:1:41:0,-19.3858,-269.233 0/0:74:74,0:74:2968:0:0:0,-22.2762,-267.209 0/1:78:68,10:68:2732:10:399:-12.7889,0,-222.509 0/0:63:60,3:60:2382:3:114:0,-8.33567,-203.902 dDocent_Contig_648 7 . T C 89.8007 . AB=0.113208;ABP=140.755;AC=1;AF=0.125;AN=8;AO=19;CIGAR=1X;DP=336;DPB=336;DPRA=4.33333;EPP=44.2683;EPPR=689.196;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=726;QR=12128;RO=316;RPL=0;RPP=44.2683;RPPR=689.196;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=316;SRP=689.196;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:148:142,5:142:5465:5:184:0,-27.6299,-474.929 0/1:106:94,12:94:3594:12:464:-10.2019,0,-291.676 0/0:58:56,2:56:2139:2:78:0,-10.0563,-185.328 0/0:24:24,0:24:930:0:0:0,-7.22472,-84.0168 dDocent_Contig_650 12 . T A 5903.16 . AB=0.477541;ABP=4.8635;AC=4;AF=0.5;AN=8;AO=202;CIGAR=1X1M1X;DP=423;DPB=423;DPRA=0;EPP=441.648;EPPR=482.906;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.995475;PAO=0;PQA=0;PQR=0;PRO=0;QA=8026;QR=8844;RO=221;RPL=0;RPP=441.648;RPPR=482.906;RPR=202;RUN=1;SAF=202;SAP=441.648;SAR=0;SRF=221;SRP=482.906;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:124:83,41:83:3324:41:1612:-107.991,0,-261.891 0|1:157:54,103:54:2161:103:4105:-322.182,0,-147.408 0|1:85:44,41:44:1757:41:1636:-121.887,0,-132.767 0|1:57:40,17:40:1602:17:673:-43.7446,0,-127.256 dDocent_Contig_652 158 . T C 225.342 . AB=0.391304;ABP=5.3706;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X;DP=80;DPB=80;DPRA=1.21053;EPP=22.5536;EPPR=116.814;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=337;QR=2647;RO=71;RPL=9;RPP=22.5536;RPPR=116.814;RPR=0;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=157.185;SRR=71;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:32:32,0:32:1165:0:0:0,-9.63296,-105.145 0/1:23:14,9:14:538:9:337:-23.756,0,-41.8406 0/0:19:19,0:19:715:0:0:0,-5.71957,-64.6782 0/0:6:6,0:6:229:0:0:0,-1.80618,-20.9757 dDocent_Contig_653 23 . T C 919.586 . AB=0.227778;ABP=118.87;AC=2;AF=0.25;AN=8;AO=41;CIGAR=1X;DP=325;DPB=325;DPRA=1.24138;EPP=92.0407;EPPR=619.708;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.996479;PAO=0;PQA=0;PQR=0;PRO=0;QA=1644;QR=11342;RO=284;RPL=0;RPP=92.0407;RPPR=619.708;RPR=41;RUN=1;SAF=41;SAP=92.0407;SAR=0;SRF=284;SRP=619.708;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:97:97,0:97:3880:0:0:0,-29.1999,-349.188 0/1:104:86,18:86:3396:18:727:-34.447,0,-274.383 0/1:76:53,23:53:2145:23:917:-59.9553,0,-170.34 0/0:48:48,0:48:1921:0:0:0,-14.4494,-173.088 dDocent_Contig_654 12 . T C 10086.1 . AB=0.701099;ABP=162.835;AC=4;AF=0.5;AN=8;AO=319;CIGAR=1X;DP=455;DPB=455;DPRA=0;EPP=695.71;EPPR=298.331;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.990596;PAIREDR=0.985294;PAO=0;PQA=0;PQR=0;PRO=0;QA=12787;QR=5457;RO=136;RPL=0;RPP=695.71;RPPR=298.331;RPR=319;RUN=1;SAF=319;SAP=695.71;SAR=0;SRF=136;SRP=298.331;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:141:35,106:35:1407:106:4283:-342.956,0,-84.4379 0/1:113:37,76:37:1479:76:3024:-238.224,0,-99.3359 0/1:133:45,88:45:1800:88:3535:-278.136,0,-122.175 0/1:68:19,49:19:771:49:1945:-154.781,0,-49.2398 dDocent_Contig_655 37 . T A 39.6477 . AB=0.101124;ABP=126.003;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X;DP=176;DPB=176;DPRA=3.06897;EPP=22.5536;EPPR=365.646;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=348;QR=6724;RO=167;RPL=0;RPP=22.5536;RPPR=365.646;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=167;SRP=365.646;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:89:80,9:80:3204:9:348:-4.88554,0,-261.629 0/0:35:35,0:35:1412:0:0:0,-10.536,-127.333 0/0:24:24,0:24:975:0:0:0,-7.22472,-88.0468 0/0:28:28,0:28:1133:0:0:0,-8.42884,-102.246 dDocent_Contig_656 8 . T A 99.9771 . AB=0.481481;ABP=3.73412;AC=4;AF=0.5;AN=8;AO=117;CIGAR=1X;DP=243;DPB=243;DPRA=0;EPP=257.073;EPPR=276.616;GTI=0;LEN=1;MEANALT=1;MQM=8.82906;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4477;QR=4815;RO=126;RPL=0;RPP=257.073;RPPR=276.616;RPR=117;RUN=1;SAF=117;SAP=257.073;SAR=0;SRF=126;SRP=276.616;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:82:49,33:49:1870:33:1264:-4.27522,0,-143.862 0/1:75:35,40:35:1353:40:1537:-1.23316,0,-99.4774 0/1:48:27,21:27:1018:21:794:-1.27629,0,-77.4712 0/1:38:15,23:15:574:23:882:-8.06223,0,-40.5618 dDocent_Contig_657 7 . T C 2778.41 . AB=0.318182;ABP=47.2294;AC=4;AF=0.5;AN=8;AO=49;CIGAR=1X2M;DP=208;DPB=208;DPRA=0;EPP=109.412;EPPR=211.472;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1881;QR=3639;RO=96;RPL=0;RPP=109.412;RPPR=211.472;RPR=49;RUN=1;SAF=49;SAP=109.412;SAR=0;SRF=96;SRP=211.472;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:78:34,4,40:34:1296:4,40:150,1550:-117.117,-115.067,-220.176,0,-94.0357,-94.2801 0|1:54:23,31,0:23:872:31,0:1182,0:-90.4247,0,-62.5434,-97.3484,-71.8753,-168.844 0|1:51:28,15,8:28:1060:15,8:574,292:-38.6876,0,-82.3971,-23.2725,-63.0655,-107.764 0|1:25:11,13,1:11:411:13,1:493,39:-37.1009,0,-29.7253,-37.2056,-30.4315,-70.5556 dDocent_Contig_658 25 . A T 752.361 . AB=0.604651;ABP=7.10075;AC=1;AF=0.125;AN=8;AO=26;CIGAR=1X;DP=139;DPB=139;DPRA=1.34375;EPP=59.4686;EPPR=248.387;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=990;QR=4354;RO=113;RPL=0;RPP=59.4686;RPPR=248.387;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=113;SRP=248.387;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:66:66,0:66:2546:0:0:0,-19.868,-229.306 0/1:43:17,26:17:661:26:990:-76.4579,0,-46.8769 0/0:15:15,0:15:583:0:0:0,-4.51545,-52.8061 0/0:15:15,0:15:564:0:0:0,-4.51545,-51.0847 dDocent_Contig_659 49 . A T 63.0545 . AB=0.181818;ABP=22.3561;AC=2;AF=0.25;AN=8;AO=5;CIGAR=1X;DP=81;DPB=81;DPRA=1.08772;EPP=13.8677;EPPR=168.042;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.986842;PAO=0;PQA=0;PQR=0;PRO=0;QA=203;QR=3017;RO=76;RPL=0;RPP=13.8677;RPPR=168.042;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=76;SRP=168.042;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:19:19,0:19:763:0:0:0,-5.71957,-68.992 0/0:40:39,1:39:1557:1:41:0,-7.94663,-136.275 0/1:10:8,2:8:298:2:80:-4.58149,0,-24.1589 0/1:12:10,2:10:399:2:82:-4.16732,0,-32.6561 dDocent_Contig_660 30 . G C 12709.8 . AB=0.748858;ABP=238.62;AC=5;AF=0.625;AN=8;AO=402;CIGAR=1M1D1M1X;DP=517;DPB=416.5;DPRA=0;EPP=875.942;EPPR=250.558;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=15834;QR=4460;RO=114;RPL=0;RPP=875.942;RPPR=250.558;RPR=402;RUN=1;SAF=402;SAP=875.942;SAR=0;SRF=114;SRP=250.558;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:154:33,120:33:1293:120:4733:-379.44,0,-70.1821 0|1:134:25,109:25:984:109:4291:-345.835,0,-48.528 0|1:150:51,99:51:1985:99:3854:-301.727,0,-133.718 1|1:79:5,74:5:198:74:2956:-247.945,-5.58399,0 dDocent_Contig_661 141 . T A 113.403 . AB=0.241379;ABP=19.8579;AC=1;AF=0.125;AN=8;AO=13;CIGAR=1X;DP=140;DPB=140;DPRA=0.962963;EPP=31.2394;EPPR=278.787;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=410;QR=4689;RO=127;RPL=0;RPP=31.2394;RPPR=278.787;RPR=13;RUN=1;SAF=0;SAP=31.2394;SAR=13;SRF=0;SRP=278.787;SRR=127;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:24:23,1:23:885:1:31:0,-4.12527,-76.8664 0/0:36:36,0:36:1309:0:0:0,-10.8371,-118.073 0/0:51:46,5:46:1732:5:146:0,-1.92276,-142.687 0/1:29:22,7:22:763:7:233:-12.5621,0,-60.2309 dDocent_Contig_662 26 . G T 321.098 . AB=0.120438;ABP=345.881;AC=4;AF=0.5;AN=8;AO=33;CIGAR=1X;DP=274;DPB=274;DPRA=0;EPP=74.6689;EPPR=526.335;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.954357;PAO=0;PQA=0;PQR=0;PRO=0;QA=1318;QR=9480;RO=241;RPL=0;RPP=74.6689;RPPR=526.335;RPR=33;RUN=1;SAF=33;SAP=74.6689;SAR=0;SRF=241;SRP=526.335;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:110:98,12:98:3892:12:475:-9.98634,0,-317.166 0/1:68:60,8:60:2332:8:317:-8.42111,0,-189.576 0/1:63:55,8:55:2129:8:324:-10.5643,0,-172.831 0/1:33:28,5:28:1127:5:202:-8.6275,0,-91.7772 dDocent_Contig_663 31 . T C 1722.43 . AB=0.272374;ABP=118.673;AC=4;AF=0.5;AN=8;AO=70;CIGAR=1X;DP=257;DPB=257;DPRA=0;EPP=155.013;EPPR=400.436;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=0.989305;PAO=0;PQA=0;PQR=0;PRO=0;QA=2819;QR=7489;RO=187;RPL=0;RPP=155.013;RPPR=409.076;RPR=70;RUN=1;SAF=70;SAP=155.013;SAR=0;SRF=186;SRP=400.436;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:73:43,30:43:1717:30:1211:-87.2873,0,-132.777 0/1:63:36,27:36:1436:27:1091:-79.5087,0,-110.523 0/1:76:67,9:67:2681:9:353:-9.25088,0,-218.527 0/1:45:41,4:41:1655:4:164:-1.60355,0,-135.625 dDocent_Contig_665 58 . C T 117.697 . AB=0.24;ABP=17.6895;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X;DP=272;DPB=272;DPRA=1.04511;EPP=22.5536;EPPR=574.108;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.973384;PAO=0;PQA=0;PQR=0;PRO=0;QA=338;QR=9972;RO=263;RPL=9;RPP=22.5536;RPPR=574.108;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=263;SRP=574.108;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:114:111,3:111:4173:3:114:0,-23.6854,-365.019 0/0:117:117,0:117:4464:0:0:0,-35.2205,-401.821 0/1:25:19,6:19:729:6:224:-12.9915,0,-58.4155 0/0:16:16,0:16:606:0:0:0,-4.81648,-54.8755 dDocent_Contig_666 30 . T C 436.781 . AB=0.11465;ABP=205.51;AC=2;AF=0.25;AN=8;AO=20;CIGAR=1X7M;DP=211;DPB=211;DPRA=0;EPP=46.4397;EPPR=378.675;GTI=0;LEN=1;MEANALT=2.25;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=0.9;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=807;QR=6648;RO=173;RPL=0;RPP=46.4397;RPPR=378.675;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=173;SRP=378.675;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:79:65,0,0,14:65:2504:0,0,14:0,0,565:-27.4113,-46.9782,-252.559,-46.9782,-252.559,-252.559,0,-205.981,-205.981,-201.766 0|1:78:59,12,2,4:59:2265:12,2,4:446,82,160:-18.7097,0,-182.284,-29.6992,-179.128,-215.014,-23.2863,-172.716,-202.435,-208 0|0:28:24,1,2,1:24:922:1,2,1:41,80,41:0,-3.83899,-79.2057,-0.639502,-72.9154,-75.6984,-3.83899,-76.1217,-72.9154,-79.2057 0|0:26:25,0,0,1:25:957:0,0,1:0,0,41:0,-7.52575,-86.0313,-7.52575,-86.0313,-86.0313,-3.73221,-82.6462,-82.6462,-82.3452 dDocent_Contig_667 42 . G A 158.389 . AB=0.144578;ABP=94.0813;AC=1;AF=0.125;AN=8;AO=19;CIGAR=1X;DP=255;DPB=255;DPRA=2.10976;EPP=44.2683;EPPR=515.478;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=728;QR=9371;RO=236;RPL=0;RPP=44.2683;RPPR=515.478;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=236;SRP=515.478;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:83:71,12:71:2798:12:460:-16.7597,0,-226.938 0/0:90:83,7:83:3302:7:268:0,-2.61321,-272.753 0/0:55:55,0:55:2196:0:0:0,-16.5566,-197.816 0/0:27:27,0:27:1075:0:0:0,-8.12781,-97.0364 dDocent_Contig_668 7 . T C 93.6537 . AB=0.1;ABP=30.8051;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X2M1X;DP=145;DPB=145;DPRA=1.03846;EPP=13.8677;EPPR=287.473;GTI=0;LEN=1;MEANALT=1.5;MQM=53.6;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.885496;PAO=0;PQA=0;PQR=0;PRO=0;QA=194;QR=5018;RO=131;RPL=0;RPP=13.8677;RPPR=287.473;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=131;SRP=287.473;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:25:19,0,5:19:729:0,5:0,194:-10.2154,-15.935,-75.7698,0,-59.8324,-58.3272 0|0:61:55,3,3:55:2111:3,3:116,119:0,-7.079,-179.444,-6.75519,-170.55,-179.131 0|0:39:39,0,0:39:1485:0,0:0,0:0,-11.7402,-133.925,-11.7402,-133.925,-133.925 0|1:20:18,2,0:18:693:2,0:78,0:-1.3731,0,-56.6837,-6.79164,-57.2858,-63.6888 dDocent_Contig_669 12 . A G 58.5509 . AB=0.117647;ABP=67.7713;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=269;DPB=269;DPRA=0.701835;EPP=16.0391;EPPR=574.108;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=245;QR=10427;RO=263;RPL=0;RPP=16.0391;RPPR=574.108;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=263;SRP=574.108;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:115:115,0:115:4588:0:0:0,-34.6184,-412.848 0/0:74:74,0:74:2955:0:0:0,-22.2762,-266.05 0/1:51:45,6:45:1748:6:245:-7.07694,0,-142.178 0/0:29:29,0:29:1136:0:0:0,-8.72987,-102.522 dDocent_Contig_671 18 . A G 122.387 . AB=0.152542;ABP=64.8789;AC=2;AF=0.25;AN=8;AO=9;CIGAR=1X;DP=117;DPB=117;DPRA=1.01724;EPP=22.5536;EPPR=237.529;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=352;QR=4214;RO=108;RPL=0;RPP=22.5536;RPPR=237.529;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=108;SRP=237.529;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:31:31,0:31:1210:0:0:0,-9.33193,-109.186 0/0:27:27,0:27:1047:0:0:0,-8.12781,-94.5307 0/1:28:25,3:25:980:3:119:-2.66655,0,-80.0721 0/1:31:25,6:25:977:6:233:-12.0082,0,-78.9013 dDocent_Contig_672 139 . A G 7429.55 . 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AB=0.264706;ABP=35.7101;AC=1;AF=0.125;AN=8;AO=18;CIGAR=1X;DP=284;DPB=284;DPRA=0.944444;EPP=42.0968;EPPR=580.622;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=594;QR=7866;RO=266;RPL=18;RPP=42.0968;RPPR=580.622;RPR=0;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=266;SRP=580.622;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:138:138,0:138:4112:0:0:0,-41.5421,-370.309 0/1:68:50,18:50:1480:18:594:-33.3018,0,-113.003 0/0:39:39,0:39:1127:0:0:0,-11.7402,-101.702 0/0:39:39,0:39:1147:0:0:0,-11.7402,-103.506 dDocent_Contig_674 138 . G T 240.208 . AB=0.146789;ABP=121.126;AC=1;AF=0.125;AN=8;AO=16;CIGAR=1X;DP=459;DPB=459;DPRA=0.934286;EPP=37.7539;EPPR=964.973;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=638;QR=17540;RO=443;RPL=0;RPP=37.7539;RPPR=964.973;RPR=16;RUN=1;SAF=0;SAP=37.7539;SAR=16;SRF=0;SRP=964.973;SRR=443;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:109:93,16:93:3703:16:638:-24.9416,0,-300.464 0/0:128:128,0:128:5091:0:0:0,-38.5318,-458.058 0/0:112:112,0:112:4424:0:0:0,-33.7154,-398.096 0/0:110:110,0:110:4322:0:0:0,-33.1133,-388.93 dDocent_Contig_676 15 . A T 2092.78 . 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A T 1234.83 . AB=0.187192;ABP=175.541;AC=1;AF=0.125;AN=8;AO=38;CIGAR=1M1D2M1X;DP=203;DPB=195.4;DPRA=0;EPP=85.5263;EPPR=248.387;GTI=0;LEN=1;MEANALT=2.5;MQM=57.3684;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=0.973684;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1519;QR=4422;RO=113;RPL=0;RPP=85.5263;RPPR=248.387;RPR=38;RUN=1;SAF=38;SAP=85.5263;SAR=0;SRF=113;SRP=248.387;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:74:52,8,0,14:52:2045:8,0,14:322,0,544:-29.0322,-18.1425,-183.953,-44.6858,-186.361,-212.901,0,-141.668,-168.207,-163.993 0|1:57:36,12,0,9:36:1412:12,0,9:480,0,364:-28.3842,0,-112.495,-39.2213,-116.108,-155.334,-9.20703,-86.0939,-125.321,-122.611 0|0:53:17,16,2,18:17:658:16,2,18:636,82,715:-53.7448,-7.75908,-56.9858,-52.0933,-55.0332,-105.538,0,-2.93922,-47.277,-48.6279 0|0:19:8,2,3,6:8:307:2,3,6:81,120,245:-17.8107,-13.5398,-38.1249,-10.3357,-28.8407,-34.6181,0,-18.5044,-15.2981,-23.3799 dDocent_Contig_681 20 . A G 486.291 . AB=0.0714286;ABP=92.3509;AC=0;AF=0;AN=8;AO=4;CIGAR=11M1X1M2X4M1X2M1X4M;DP=157;DPB=152.407;DPRA=2.43478;EPP=11.6962;EPPR=250.558;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=4;NUMALT=4;ODDS=1.38778e-17;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=158;QR=4461;RO=114;RPL=0;RPP=11.6962;RPPR=250.558;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=114;SRP=250.558;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:56:37,4,0,0,13:37:1448:4,0,0,13:158,0,0,488:-28.8188,-26.952,-144.813,-39.9569,-146.017,-159.019,-39.9569,-146.017,-159.019,-159.019,0,-106.048,-119.05,-119.05,-115.136 0|0:50:37,0,2,2,8:37:1460:0,2,2,8:0,72,82,304:-13.7881,-24.9262,-145.063,-19.0559,-139.19,-138.588,-18.1532,-138.295,-132.421,-137.693,0,-120.135,-114.262,-113.366,-117.726 0|0:28:18,0,2,2,5:18:697:0,2,2,5:0,64,78,188:-9.9888,-15.4073,-72.67,-10.2634,-67.5181,-66.916,-8.99085,-66.2576,-61.106,-65.6556,0,-57.2689,-52.1181,-50.8564,-55.7637 0|0:23:22,0,0,1,0:22:856:0,0,1,0:0,0,41,0:0,-6.62266,-76.9495,-6.62266,-76.9495,-76.9495,-2.82912,-73.5646,-73.5646,-73.2635,-6.62266,-76.9495,-76.9495,-73.5646,-76.9495 dDocent_Contig_682 14 . G A 998.828 . AB=0.342593;ABP=26.2531;AC=2;AF=0.25;AN=8;AO=40;CIGAR=1X;DP=178;DPB=178;DPRA=1.78571;EPP=89.8692;EPPR=302.673;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.992754;PAO=0;PQA=0;PQR=0;PRO=0;QA=1610;QR=5519;RO=138;RPL=0;RPP=89.8692;RPPR=302.673;RPR=40;RUN=1;SAF=40;SAP=89.8692;SAR=0;SRF=138;SRP=302.673;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:67:37,30:37:1464:30:1207:-88.7352,0,-111.829 0/0:42:39,3:39:1568:3:119:0,-1.54825,-130.258 0/1:41:34,7:34:1365:7:284:-13.5912,0,-110.764 0/0:28:28,0:28:1122:0:0:0,-8.42884,-101.262 dDocent_Contig_683 41 . T C 1460.81 . AB=0.354839;ABP=31.3795;AC=3;AF=0.375;AN=8;AO=60;CIGAR=1X;DP=246;DPB=246;DPRA=0;EPP=133.299;EPPR=406.904;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2380;QR=7482;RO=186;RPL=0;RPP=133.299;RPPR=406.904;RPR=60;RUN=1;SAF=60;SAP=133.299;SAR=0;SRF=186;SRP=406.904;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:58:43,15:43:1734:15:607:-37.5085,0,-138.814 0/0:91:86,5:86:3464:5:205:0,-8.55872,-292.955 0/1:50:31,19:31:1243:19:739:-51.7743,0,-97.0876 0/1:47:26,21:26:1041:21:829:-60.7645,0,-79.829 dDocent_Contig_684 99 . N A 437.99 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=14;CIGAR=2X;DP=14;DPB=14;DPRA=0;EPP=33.4109;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=13.2106;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=483;QR=0;RO=0;RPL=14;RPP=33.4109;RPPR=0;RPR=0;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:14:0,14:0:0:14:483:-43.799,-4.21442,0 .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. dDocent_Contig_685 46 . G A 2188.99 . AB=0.157956;ABP=877.957;AC=3;AF=0.375;AN=8;AO=153;CIGAR=1X;DP=1075;DPB=1075;DPRA=0;EPP=335.246;EPPR=2005.11;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6017;QR=36548;RO=922;RPL=0;RPP=335.246;RPPR=2005.11;RPR=153;RUN=1;SAF=153;SAP=335.246;SAR=0;SRF=922;SRP=2005.11;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:323:281,42:281:11170:42:1638:-50.4238,0,-907.321 0/1:336:263,73:263:10514:73:2875:-157.698,0,-844.413 0/0:214:197,17:197:7676:17:668:0,-3.9758,-630.006 0/1:202:181,21:181:7188:21:836:-14.7441,0,-585.765 dDocent_Contig_686 46 . C T 2002.16 . AB=0.430303;ABP=9.97217;AC=3;AF=0.375;AN=8;AO=71;CIGAR=1X;DP=189;DPB=189;DPRA=2.29167;EPP=157.185;EPPR=259.244;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2811;QR=4674;RO=118;RPL=0;RPP=157.185;RPPR=259.244;RPR=71;RUN=1;SAF=71;SAP=157.185;SAR=0;SRF=118;SRP=259.244;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:59:15,44:15:597:44:1779:-142.561,0,-36.3062 0/1:80:58,22:58:2311:22:851:-52.8105,0,-184.074 0/1:26:21,5:21:819:5:181:-8.81107,0,-66.2001 0/0:24:24,0:24:947:0:0:0,-7.22472,-85.5375 dDocent_Contig_687 50 . C T 57.2651 . AB=0.111111;ABP=97.59;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=222;DPB=222;DPRA=1.44;EPP=20.3821;EPPR=467.705;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.6075;NS=4;NUMALT=1;ODDS=0;PAIRED=0.125;PAIREDR=0.200935;PAO=0;PQA=0;PQR=0;PRO=0;QA=314;QR=8523;RO=214;RPL=8;RPP=20.3821;RPPR=467.705;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=214;SRP=467.705;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:64:64,0:64:2524:0:0:0,-19.2659,-224.662 0/1:72:64,8:64:2567:8:314:-6.94836,0,-209.383 0/0:53:53,0:53:2117:0:0:0,-15.9546,-190.708 0/0:33:33,0:33:1315:0:0:0,-9.93399,-118.614 dDocent_Contig_688 22 . G A 962.979 . AB=0.316239;ABP=37.327;AC=3;AF=0.375;AN=8;AO=37;CIGAR=1X6M;DP=129;DPB=128;DPRA=3.25;EPP=83.3548;EPPR=187.585;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.918919;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1479;QR=3333;RO=85;RPL=0;RPP=83.3548;RPPR=187.585;RPR=37;RUN=1;SAF=37;SAP=83.3548;SAR=0;SRF=85;SRP=187.585;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:40:31,0,9:31:1220:0,9:0,355:-20.2689,-29.6009,-129.958,0,-100.751,-98.0421 0|1:50:26,6,18:26:1017:6,18:234,728:-52.2064,-40.8026,-122.604,0,-64.3827,-78.1981 0|1:27:16,1,10:16:618:1,10:38,396:-27.7891,-29.4905,-79.9324,0,-47.6385,-47.7444 0|0:12:12,0,0:12:478:0,0:0,0:0,-3.61236,-43.3723,-3.61236,-43.3723,-43.3723 dDocent_Contig_689 13 . C T 711.136 . AB=0.147239;ABP=355.375;AC=4;AF=0.5;AN=8;AO=48;CIGAR=1X;DP=326;DPB=326;DPRA=0;EPP=107.241;EPPR=589.433;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.895833;PAIREDR=0.971223;PAO=0;PQA=0;PQR=0;PRO=0;QA=1926;QR=11133;RO=278;RPL=0;RPP=107.241;RPPR=606.68;RPR=48;RUN=1;SAF=48;SAP=107.241;SAR=0;SRF=276;SRP=589.433;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:74:65,9:65:2564:9:363:-10.757,0,-208.612 0/1:91:81,10:81:3240:10:406:-9.5063,0,-264.265 0/1:113:93,20:93:3753:20:802:-38.4805,0,-303.742 0/1:48:39,9:39:1576:9:355:-17.8593,0,-127.624 dDocent_Contig_690 18 . C A 5424.68 . AB=0.144476;ABP=390.56;AC=0;AF=0;AN=8;AO=51;CIGAR=1X1M1X;DP=353;DPB=353;DPRA=0;EPP=113.755;EPPR=270.101;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=5.55112e-17;PAIRED=1;PAIREDR=0.98374;PAO=0;PQA=0;PQR=0;PRO=0;QA=2025;QR=4901;RO=123;RPL=0;RPP=113.755;RPPR=270.101;RPR=51;RUN=1;SAF=51;SAP=113.755;SAR=0;SRF=123;SRP=270.101;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:95:33,7,55:33:1300:7,55:273,2170:-168.467,-155.963,-260.794,0,-84.5036,-90.385 0|0:119:45,18,56:45:1810:18,56:723,2242:-171.138,-125.108,-268.853,0,-89.5872,-132.306 0|0:77:28,11,38:28:1107:11,38:424,1509:-115.796,-89.4149,-177.2,0,-56.2941,-79.6646 0|0:62:17,15,30:17:684:15,30:605,1187:-92.5554,-47.7996,-99.6566,0,-6.49824,-47.3386 dDocent_Contig_691 13 . T G 10179.4 . AB=0.720703;ABP=219.632;AC=4;AF=0.5;AN=8;AO=369;CIGAR=1X;DP=512;DPB=512;DPRA=0;EPP=804.284;EPPR=313.531;GTI=0;LEN=1;MEANALT=1;MQM=43.1247;MQMR=60;NS=4;NUMALT=1;ODDS=2.77556e-17;PAIRED=0.9729;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=14714;QR=5494;RO=143;RPL=0;RPP=804.284;RPPR=313.531;RPR=369;RUN=1;SAF=369;SAP=804.284;SAR=0;SRF=143;SRP=313.531;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:176:65,111:65:2519:111:4386:-292.278,0,-173.914 0/1:199:50,149:50:1906:149:5968:-430.769,0,-111.868 0/1:60:15,45:15:562:45:1792:-119.924,0,-32.8541 0/1:77:13,64:13:507:64:2568:-180.462,0,-22.7982 dDocent_Contig_692 135 . T C 310.897 . AB=0.153061;ABP=207.926;AC=3;AF=0.375;AN=8;AO=32;CIGAR=1X;DP=227;DPB=227;DPRA=0;EPP=72.4974;EPPR=426.447;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.974359;PAO=0;PQA=0;PQR=0;PRO=0;QA=1104;QR=6717;RO=195;RPL=0;RPP=72.4974;RPPR=426.447;RPR=32;RUN=1;SAF=0;SAP=72.4974;SAR=32;SRF=0;SRP=426.447;SRR=195;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:87:76,11:76:2621:11:382:-8.52472,0,-209.949 0/1:55:46,9:46:1560:9:303:-11.0404,0,-117.83 0/1:54:44,10:44:1542:10:349:-15.4912,0,-122.817 0/0:31:29,2:29:994:2:70:0,-2.68453,-83.1191 dDocent_Contig_694 109 . A G 320.057 . AB=0.25;ABP=44.2683;AC=3;AF=0.375;AN=8;AO=19;CIGAR=1X;DP=90;DPB=90;DPRA=1.80952;EPP=44.2683;EPPR=157.185;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=643;QR=2439;RO=71;RPL=0;RPP=44.2683;RPPR=157.185;RPR=19;RUN=1;SAF=0;SAP=44.2683;SAR=19;SRF=0;SRP=157.185;SRR=71;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:8,11:8:279:11:384:-29.1761,0,-19.7294 0/0:14:14,0:14:475:0:0:0,-4.21442,-43.0742 0/1:26:22,4:22:759:4:126:-3.82505,0,-60.803 0/1:31:27,4:27:926:4:133:-2.96671,0,-74.3211 dDocent_Contig_695 163 . C A 648.909 . AB=0.2;ABP=128.087;AC=2;AF=0.25;AN=8;AO=37;CIGAR=1X;DP=397;DPB=397;DPRA=0.639706;EPP=83.3548;EPPR=725.121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1470;QR=14249;RO=360;RPL=37;RPP=83.3548;RPPR=725.121;RPR=0;RUN=1;SAF=0;SAP=83.3548;SAR=37;SRF=0;SRP=784.74;SRR=360;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:136:136,0:136:5355:0:0:0,-40.9401,-481.802 0/0:101:96,5:96:3769:5:194:0,-12.5743,-321.414 0/1:83:65,18:65:2609:18:713:-39.5034,0,-209.954 0/1:77:63,14:63:2516:14:563:-27.8312,0,-203.395 dDocent_Contig_696 22 . T A 148.045 . AB=0.134831;ABP=106.094;AC=2;AF=0.25;AN=8;AO=13;CIGAR=1X;DP=162;DPB=162;DPRA=2.66667;EPP=31.2394;EPPR=326.56;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.993289;PAO=0;PQA=0;PQR=0;PRO=0;QA=521;QR=5995;RO=149;RPL=0;RPP=31.2394;RPPR=326.56;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=149;SRP=326.56;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:55:54,1:54:2160:1:40:0,-12.561,-190.574 0/1:58:51,7:51:2056:7:282:-8.29264,0,-167.76 0/1:31:26,5:26:1048:5:199:-8.95551,0,-85.2793 0/0:18:18,0:18:731:0:0:0,-5.41854,-66.1133 dDocent_Contig_697 1 . N G 278.539 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=7;CIGAR=1X;DP=7;DPB=7;DPRA=0;EPP=18.2106;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=285;QR=0;RO=0;RPL=0;RPP=18.2106;RPPR=0;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1:0,1:0:0:1:41:-4.09457,-0.30103,0 1/1:2:0,2:0:0:2:81:-7.68573,-0.60206,0 1/1:3:0,3:0:0:3:122:-11.3725,-0.90309,0 1/1:1:0,1:0:0:1:41:-4.09457,-0.30103,0 dDocent_Contig_698 62 . G A 10448.7 . AB=0.686869;ABP=153.149;AC=4;AF=0.5;AN=8;AO=340;CIGAR=1X;DP=495;DPB=495;DPRA=0;EPP=741.311;EPPR=339.589;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=13323;QR=6180;RO=155;RPL=340;RPP=741.311;RPPR=339.589;RPR=0;RUN=1;SAF=340;SAP=741.311;SAR=0;SRF=155;SRP=339.589;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:190:63,127:63:2510:127:4995:-392.274,0,-168.851 0/1:171:57,114:57:2275:114:4464:-350.251,0,-153.44 0/1:76:21,55:21:846:55:2146:-170.449,0,-53.5755 0/1:58:14,44:14:549:44:1718:-137.388,0,-32.2916 dDocent_Contig_699 17 . T C 8290.6 . AB=0.489474;ABP=3.55888;AC=4;AF=0.5;AN=8;AO=279;CIGAR=1X;DP=570;DPB=570;DPRA=0;EPP=608.851;EPPR=632.737;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=59.9448;NS=4;NUMALT=1;ODDS=0;PAIRED=0.960573;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=11176;QR=11565;RO=290;RPL=0;RPP=608.851;RPPR=632.737;RPR=279;RUN=1;SAF=279;SAP=608.851;SAR=0;SRF=290;SRP=632.737;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:175:85,90:85:3399:90:3592:-270.612,0,-253.249 0/1:126:54,72:54:2172:72:2895:-222.713,0,-157.72 0/1:141:71,70:71:2851:70:2834:-212.709,0,-214.242 0/1:128:80,47:80:3143:47:1855:-128.515,0,-244.311 dDocent_Contig_700 94 . C A 3113.36 . AB=0.514286;ABP=3.44459;AC=4;AF=0.5;AN=8;AO=126;CIGAR=1X;DP=245;DPB=245;DPRA=0;EPP=276.616;EPPR=160.834;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=54.3613;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.840336;PAO=0;PQA=0;PQR=0;PRO=0;QA=4326;QR=4193;RO=119;RPL=126;RPP=276.616;RPPR=261.416;RPR=0;RUN=1;SAF=126;SAP=276.616;SAR=0;SRF=106;SRP=160.834;SRR=13;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:87:40,47:40:1399:47:1583:-116.569,0,-93.1641 0/1:73:36,37:36:1269:37:1283:-93.7982,0,-81.0802 0/1:50:24,26:24:867:26:902:-66.445,0,-49.4783 0/1:35:19,16:19:658:16:558:-40.0133,0,-47.8991 dDocent_Contig_701 96 . T A 17789.1 . AB=0.76378;ABP=156.518;AC=7;AF=0.875;AN=8;AO=624;CIGAR=1X;DP=716;DPB=716;DPRA=0;EPP=1358.01;EPPR=198.443;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=21688;QR=3168;RO=90;RPL=624;RPP=1358.01;RPPR=198.443;RPR=0;RUN=1;SAF=624;SAP=1358.01;SAR=0;SRF=90;SRP=198.443;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:254:60,194:60:2110:194:6809:-536.44,0,-113.704 1/1:237:12,224:12:416:224:7810:-665.193,-33.4835,0 1/1:130:10,120:10:355:120:4101:-336.989,-6.84317,0 1/1:95:8,86:8:287:86:2968:-241.211,-2.2224,0 dDocent_Contig_702 105 . N A 140.738 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=5;CIGAR=3X;DP=5;DPB=6;DPRA=0;EPP=13.8677;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=6.97229;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=153;QR=0;RO=0;RPL=0;RPP=13.8677;RPPR=0;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:5:0,5:0:0:5:153:-14.0734,-1.50515,0 .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. dDocent_Contig_703 73 . A C 1833.68 . AB=0.474684;ABP=3.88988;AC=4;AF=0.5;AN=8;AO=75;CIGAR=1X2M1D1X;DP=158;DPB=143;DPRA=0;EPP=165.871;EPPR=181.071;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.963415;PAO=0;PQA=0;PQR=0;PRO=0;QA=2613;QR=2839;RO=82;RPL=75;RPP=165.871;RPPR=181.071;RPR=0;RUN=1;SAF=75;SAP=165.871;SAR=0;SRF=82;SRP=181.071;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:39:16,23:16:559:23:805:-61.0305,0,-38.8986 0|1:46:25,20:25:841:20:699:-49.337,0,-62.1021 0|1:52:28,24:28:981:24:829:-59.2723,0,-72.9499 0|1:21:13,8:13:458:8:280:-19.218,0,-35.2329 dDocent_Contig_704 5 . T A 228.024 . AB=0.184211;ABP=68.8402;AC=1;AF=0.125;AN=8;AO=15;CIGAR=2X;DP=232;DPB=232;DPRA=0.64539;EPP=35.5824;EPPR=474.22;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=551;QR=8420;RO=217;RPL=0;RPP=35.5824;RPPR=474.22;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=217;SRP=474.22;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:76:62,14:62:2405:14:514:-23.7227,0,-193.772 0|0:114:114,0:114:4428:0:0:0,-34.3174,-398.566 0|0:27:27,0:27:1041:0:0:0,-8.12781,-93.9963 0|0:15:14,1:14:546:1:37:0,-0.817621,-45.7885 dDocent_Contig_705 17 . A G 5014.37 . AB=0.284107;ABP=290.857;AC=4;AF=0.5;AN=8;AO=202;CIGAR=1X;DP=711;DPB=711;DPRA=0;EPP=441.648;EPPR=1108.29;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=8002;QR=20308;RO=509;RPL=0;RPP=441.648;RPPR=1108.29;RPR=202;RUN=1;SAF=202;SAP=441.648;SAR=0;SRF=509;SRP=1108.29;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:256:197,59:197:7859:59:2348:-134.413,0,-629.829 0/1:255:181,74:181:7219:74:2905:-184.796,0,-572.596 0/1:114:74,40:74:2956:40:1603:-110.188,0,-231.818 0/1:86:57,29:57:2274:29:1146:-77.5311,0,-178.939 dDocent_Contig_706 57 . T A 3472.25 . AB=0.536697;ABP=5.56029;AC=4;AF=0.5;AN=8;AO=117;CIGAR=1X;DP=218;DPB=218;DPRA=0;EPP=257.073;EPPR=222.329;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4636;QR=3948;RO=101;RPL=117;RPP=257.073;RPPR=222.329;RPR=0;RUN=1;SAF=117;SAP=257.073;SAR=0;SRF=101;SRP=222.329;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:61:32,29:32:1285:29:1165:-86.7676,0,-97.5513 0/1:81:42,39:42:1616:39:1552:-115.531,0,-121.288 0/1:58:19,39:19:726:39:1531:-120.561,0,-48.1894 0/1:18:8,10:8:321:10:388:-29.8554,0,-23.8396 dDocent_Contig_707 22 . C G 3148.79 . AB=0.553763;ABP=7.68013;AC=4;AF=0.5;AN=8;AO=103;CIGAR=10M1X9M;DP=186;DPB=182.4;DPRA=0;EPP=226.672;EPPR=172.385;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4161;QR=3060;RO=78;RPL=0;RPP=226.672;RPPR=172.385;RPR=103;RUN=1;SAF=103;SAP=226.672;SAR=0;SRF=78;SRP=172.385;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:85:33,0,52:33:1305:0,52:0,2089:-162.595,-172.529,-279.923,0,-107.792,-92.1381 0|1:18:7,4,7:7:264:4,7:148,282:-21.1565,-11.1675,-31.5805,0,-9.52885,-19.5272 0|1:28:5,0,23:5:196:0,23:0,937:-76.2016,-77.7067,-93.8223,0,-16.5099,-9.58621 0|1:55:33,0,21:33:1295:0,21:0,853:-60.4153,-70.3493,-176.843,0,-106.485,-100.163 dDocent_Contig_708 16 . T A 108.058 . AB=0.222222;ABP=21.1059;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=90;DPB=90;DPRA=1.28571;EPP=16.0391;EPPR=185.414;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=220;QR=3400;RO=84;RPL=0;RPP=16.0391;RPPR=185.414;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=84;SRP=185.414;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:18:18,0:18:725:0:0:0,-5.41854,-65.574 0/1:27:21,6:21:861:6:220:-12.0277,0,-69.669 0/0:30:30,0:30:1208:0:0:0,-9.0309,-108.993 0/0:15:15,0:15:606:0:0:0,-4.51545,-54.8775 dDocent_Contig_709 24 . A C 63.4252 . AB=0.111111;ABP=97.59;AC=2;AF=0.25;AN=8;AO=16;CIGAR=1X;DP=225;DPB=225;DPRA=0;EPP=37.7539;EPPR=456.848;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=644;QR=8233;RO=209;RPL=0;RPP=37.7539;RPPR=456.848;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=209;SRP=456.848;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:70:68,2:68:2714:2:80:0,-13.4805,-236.788 0/0:83:77,6:77:3004:6:245:0,-2.55602,-248.038 0/1:48:44,4:44:1751:4:159:-0.242515,0,-143.356 0/1:24:20,4:20:764:4:160:-7.55871,0,-61.847 dDocent_Contig_710 51 . A C 936.62 . AB=0.152;ABP=397.471;AC=2;AF=0.25;AN=8;AO=58;CIGAR=1X;DP=755;DPB=755;DPRA=1.08052;EPP=128.956;EPPR=1516.53;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.706897;PAIREDR=0.738881;PAO=0;PQA=0;PQR=0;PRO=0;QA=2325;QR=27863;RO=697;RPL=58;RPP=128.956;RPPR=1516.53;RPR=0;RUN=1;SAF=58;SAP=128.956;SAR=0;SRF=697;SRP=1516.53;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:184:146,38:146:5869:38:1544:-83.8029,0,-472.597 0/0:202:201,1:201:8038:1:9:0,-59.9081,-722.066 0/0:178:178,0:178:7093:0:0:0,-53.5833,-638.041 0/1:191:172,19:172:6863:19:772:-12.3028,0,-559.857 dDocent_Contig_712 9 . C T 47.9417 . AB=0.109589;ABP=99.6557;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X;DP=231;DPB=231;DPRA=0.878049;EPP=22.5536;EPPR=485.077;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=346;QR=8542;RO=222;RPL=0;RPP=22.5536;RPPR=485.077;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=222;SRP=485.077;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:72:72,0:72:2747:0:0:0,-21.6742,-247.414 0/1:73:65,8:65:2513:8:307:-6.01601,0,-204.391 0/0:51:51,0:51:1970:0:0:0,-15.3525,-177.537 0/0:35:34,1:34:1312:1:39:0,-6.63949,-114.47 dDocent_Contig_713 30 . A T 1742.21 . AB=0.269962;ABP=123.894;AC=1;AF=0.125;AN=8;AO=90;CIGAR=1X;DP=963;DPB=963;DPRA=1.0211;EPP=198.443;EPPR=1898.71;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3583;QR=34583;RO=873;RPL=0;RPP=198.443;RPPR=1898.71;RPR=90;RUN=1;SAF=90;SAP=198.443;SAR=0;SRF=873;SRP=1898.71;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:228:226,2:226:8991:2:78:0,-61.2321,-801.26 0/1:263:192,71:192:7626:71:2828:-175.442,0,-606.788 0/0:237:237,0:237:9352:0:0:0,-71.3441,-841.137 0/0:235:218,17:218:8614:17:677:0,-9.48429,-713.516 dDocent_Contig_714 13 . C G 95.3419 . AB=0.126761;ABP=88.9211;AC=1;AF=0.125;AN=8;AO=10;CIGAR=1X;DP=150;DPB=150;DPRA=1.58621;EPP=24.725;EPPR=307.016;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=390;QR=5509;RO=140;RPL=0;RPP=24.725;RPPR=307.016;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=140;SRP=307.016;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:45:45,0:45:1782:0:0:0,-13.5463,-160.598 0/1:71:62,9:62:2440:9:353:-10.756,0,-198.377 0/0:13:13,0:13:488:0:0:0,-3.91339,-44.2546 0/0:21:20,1:20:799:1:37:0,-2.6238,-68.5268 dDocent_Contig_715 107 . N T 102.631 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=101;QR=0;RO=0;RPL=0;RPP=11.6962;RPPR=0;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:69:-6.55266,-0.60206,0 1/1:1:0,1:0:0:1:7:-0.699998,-0.30103,0 ./.:.:.:.:.:.:.:. 1/1:1:0,1:0:0:1:25:-2.49986,-0.30103,0 dDocent_Contig_716 209 . N G 351.755 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=10;CIGAR=1X;DP=10;DPB=10;DPRA=0;EPP=24.725;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=373;QR=0;RO=0;RPL=10;RPP=24.725;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1:0,1:0:0:1:38:-3.79727,-0.30103,0 1/1:1:0,1:0:0:1:41:-4.09457,-0.30103,0 1/1:8:0,8:0:0:8:294:-26.8022,-2.40824,0 ./.:.:.:.:.:.:.:. dDocent_Contig_717 53 . T C 43.7822 . AB=0.142857;ABP=41.7866;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X;DP=172;DPB=172;DPRA=1.04762;EPP=22.5536;EPPR=354.789;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=59.7222;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.975309;PAO=0;PQA=0;PQR=0;PRO=0;QA=327;QR=6349;RO=162;RPL=9;RPP=22.5536;RPPR=354.789;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=162;SRP=354.789;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:35:29,5:29:1121:5:171:-5.29893,0,-90.7695 0/0:53:49,4:49:1978:4:156:0,-1.53815,-163.795 0/0:43:43,0:43:1658:0:0:0,-12.9443,-147.106 0/0:41:41,0:41:1592:0:0:0,-12.3422,-143.507 dDocent_Contig_718 109 . G A 2429.02 . AB=0.374593;ABP=44.9473;AC=4;AF=0.5;AN=8;AO=115;CIGAR=1X;DP=307;DPB=307;DPRA=0;EPP=252.73;EPPR=419.933;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3760;QR=6350;RO=192;RPL=0;RPP=252.73;RPPR=419.933;RPR=115;RUN=1;SAF=0;SAP=252.73;SAR=115;SRF=0;SRP=419.933;SRR=192;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:104:86,18:86:2882:18:614:-24.2748,0,-228.32 0/1:104:71,33:71:2327:33:1053:-63.7506,0,-178.38 0/1:46:5,41:5:154:41:1371:-109.834,0,-0.317055 0/1:53:30,23:30:987:23:722:-49.3193,0,-73.1752 dDocent_Contig_719 107 . N T 3588.66 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=117;CIGAR=1X;DP=117;DPB=117;DPRA=0;EPP=257.073;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=59.7778;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=3966;QR=0;RO=0;RPL=0;RPP=257.073;RPPR=0;RPR=117;RUN=1;SAF=0;SAP=257.073;SAR=117;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:33:0,33:0:0:33:1123:-101.373,-9.93399,0 1/1:33:0,33:0:0:33:1134:-102.368,-9.93399,0 1/1:36:0,36:0:0:36:1205:-108.746,-10.8371,0 1/1:15:0,15:0:0:15:504:-45.6808,-4.51545,0 dDocent_Contig_720 14 . T A 6714.97 . AB=0.630372;ABP=54.5345;AC=4;AF=0.5;AN=8;AO=220;CIGAR=1X;DP=349;DPB=349;DPRA=0;EPP=480.734;EPPR=283.13;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=8681;QR=5119;RO=129;RPL=0;RPP=480.734;RPPR=283.13;RPR=220;RUN=1;SAF=220;SAP=480.734;SAR=0;SRF=129;SRP=283.13;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:142:26,116:26:1044:116:4574:-368.877,0,-51.5072 0/1:129:91,38:91:3596:38:1502:-96.5968,0,-284.843 0/1:63:10,53:10:400:53:2101:-170.323,0,-17.3944 0/1:15:2,13:2:79:13:504:-41.1856,0,-2.98218 dDocent_Contig_721 13 . G A 6450.8 . AB=0.581081;ABP=24.1381;AC=4;AF=0.5;AN=8;AO=215;CIGAR=1X;DP=370;DPB=370;DPRA=0;EPP=469.877;EPPR=339.589;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=8458;QR=6142;RO=155;RPL=0;RPP=469.877;RPPR=339.589;RPR=215;RUN=1;SAF=215;SAP=469.877;SAR=0;SRF=155;SRP=339.589;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:128:46,82:46:1847:82:3215:-250.889,0,-127.902 0/1:82:39,43:39:1544:43:1730:-131.236,0,-114.518 0/1:91:45,46:45:1747:46:1804:-135.182,0,-130.044 0/1:69:25,44:25:1004:44:1709:-133.263,0,-69.8835 dDocent_Contig_722 107 . N T 301.537 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=9;CIGAR=1X;DP=9;DPB=9;DPRA=0;EPP=22.5536;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=0.222222;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=313;QR=0;RO=0;RPL=0;RPP=22.5536;RPPR=0;RPR=9;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:70:-6.6474,-0.60206,0 1/1:3:0,3:0:0:3:105:-9.79616,-0.90309,0 1/1:2:0,2:0:0:2:68:-6.45788,-0.60206,0 1/1:2:0,2:0:0:2:70:-6.6474,-0.60206,0 dDocent_Contig_723 23 . G A 50.5175 . AB=0.25;ABP=9.52472;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=61;DPB=61;DPRA=1.03333;EPP=11.6962;EPPR=126.784;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=146;QR=2294;RO=57;RPL=0;RPP=11.6962;RPPR=126.784;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:14:14,0:14:562:0:0:0,-4.21442,-50.9223 0/0:16:16,0:16:643:0:0:0,-4.81648,-58.2023 0/0:19:18,1:18:723:1:40:0,-1.72389,-61.4012 0/1:12:9,3:9:366:3:106:-6.27353,0,-29.6928 dDocent_Contig_724 23 . C T 1321.64 . AB=0.268293;ABP=98.608;AC=4;AF=0.5;AN=8;AO=55;CIGAR=1X;DP=205;DPB=205;DPRA=0;EPP=122.441;EPPR=328.731;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=0.986667;PAO=0;PQA=0;PQR=0;PRO=0;QA=2200;QR=6000;RO=150;RPL=0;RPP=122.441;RPPR=328.731;RPR=55;RUN=1;SAF=55;SAP=122.441;SAR=0;SRF=150;SRP=328.731;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:22,9:22:851:9:360:-23.4278,0,-67.5631 0/1:59:38,21:38:1536:21:844:-58.513,0,-120.716 0/1:70:53,17:53:2128:17:680:-40.4547,0,-170.621 0/1:45:37,8:37:1485:8:316:-15.2575,0,-120.349 dDocent_Contig_725 179 . A G 11310.6 . AB=0.84438;ABP=360.465;AC=5;AF=0.625;AN=8;AO=359;CIGAR=1X;DP=418;DPB=418;DPRA=0;EPP=782.569;EPPR=131.127;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=13949;QR=2231;RO=59;RPL=359;RPP=782.569;RPPR=131.127;RPR=0;RUN=1;SAF=0;SAP=782.569;SAR=359;SRF=0;SRP=131.127;SRR=59;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:125:14,111:14:524:111:4355:-354.267,0,-9.86577 0/1:137:28,109:28:1065:109:4272:-343.212,0,-54.9009 0/1:85:12,73:12:467:73:2787:-225.353,0,-16.7898 1/1:71:5,66:5:175:66:2535:-212.191,-5.28577,0 dDocent_Contig_726 159 . A C 2856.45 . AB=0.69403;ABP=46.8287;AC=4;AF=0.5;AN=8;AO=93;CIGAR=1X;DP=134;DPB=134;DPRA=0;EPP=196.365;EPPR=81.4005;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3667;QR=1603;RO=40;RPL=92;RPP=196.365;RPPR=81.4005;RPR=1;RUN=1;SAF=0;SAP=204.957;SAR=93;SRF=0;SRP=89.8692;SRR=40;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:38:14,24:14:557:24:968:-75.9805,0,-39.0328 0/1:39:8,31:8:320:31:1231:-99.3214,0,-17.4259 0/1:37:12,24:12:485:24:913:-71.5622,0,-33.0779 0/1:20:6,14:6:241:14:555:-44.2704,0,-16.0452 dDocent_Contig_728 31 . G A 3497.76 . AB=0.517241;ABP=3.60933;AC=4;AF=0.5;AN=8;AO=120;CIGAR=1X1M;DP=232;DPB=232;DPRA=0;EPP=263.587;EPPR=233.186;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4700;QR=4217;RO=106;RPL=0;RPP=263.587;RPPR=233.186;RPR=120;RUN=1;SAF=120;SAP=263.587;SAR=0;SRF=106;SRP=233.186;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:61:24,0,37:24:959:0,37:0,1451:-112.479,-119.704,-198.694,0,-79.3871,-68.249 0|1:49:29,4,16:29:1162:4,16:157,615:-41.7389,-37.5569,-132.094,0,-82.829,-90.9218 0|1:75:37,0,38:37:1461:0,38:0,1487:-111.498,-122.636,-242.853,0,-120.61,-109.17 0|1:47:16,2,29:16:635:2,29:82,1147:-89.5494,-87.5968,-139.265,0,-45.4887,-43.5285 dDocent_Contig_729 80 . T C 167.202 . AB=0.35;ABP=6.91895;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=77;DPB=77;DPRA=1.33333;EPP=20.3821;EPPR=152.842;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=297;QR=2586;RO=69;RPL=8;RPP=20.3821;RPPR=152.842;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=69;SRP=152.842;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:13,7:13:493:7:259:-17.641,0,-38.6943 0/0:24:23,1:23:847:1:38:0,-3.42745,-72.743 0/0:23:23,0:23:867:0:0:0,-6.92369,-78.3446 0/0:10:10,0:10:379:0:0:0,-3.0103,-34.4616 dDocent_Contig_730 40 . A C 137.11 . AB=0.25;ABP=16.0391;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X3M1X;DP=142;DPB=142;DPRA=0.652778;EPP=22.5536;EPPR=289.645;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=363;QR=5137;RO=132;RPL=0;RPP=22.5536;RPPR=289.645;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=132;SRP=289.645;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:32:31,1:31:1188:1:39:0,-5.7364,-103.31 0|0:38:36,2:36:1411:2:82:0,-3.65946,-119.476 0|0:48:47,0:47:1838:0:0:0,-14.1484,-165.24 0|1:24:18,6:18:700:6:242:-14.9328,0,-56.1038 dDocent_Contig_731 20 . G A 5368.63 . AB=0.662651;ABP=41.155;AC=5;AF=0.625;AN=8;AO=176;CIGAR=1X3M1X;DP=237;DPB=237;DPRA=0;EPP=385.189;EPPR=131.127;GTI=0;LEN=1;MEANALT=1.5;MQM=58.3068;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.965909;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6822;QR=2289;RO=59;RPL=0;RPP=385.189;RPPR=131.127;RPR=176;RUN=1;SAF=176;SAP=385.189;SAR=0;SRF=59;SRP=131.127;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:71:5,66:5:184:66:2589:-212.328,-4.46113,0 0|1:74:27,47:27:1045:47:1807:-138.676,0,-72.0727 0|1:54:14,38:14:552:38:1482:-116.02,0,-34.011 0|1:38:13,25:13:508:25:944:-73.8057,0,-34.6224 dDocent_Contig_732 9 . T C 11422.6 . AB=0.865882;ABP=497.191;AC=4;AF=0.5;AN=8;AO=368;CIGAR=1X;DP=425;DPB=425;DPRA=0;EPP=802.112;EPPR=126.784;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=14169;QR=2155;RO=57;RPL=0;RPP=802.112;RPPR=126.784;RPR=368;RUN=1;SAF=368;SAP=802.112;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:106:18,88:18:696:88:3375:-271.975,0,-31.0642 0/1:160:16,144:16:607:144:5567:-452.826,0,-6.80061 0/1:89:10,79:10:376:79:3044:-247.328,0,-7.39832 0/1:70:13,57:13:476:57:2183:-175.624,0,-22.0984 dDocent_Contig_733 18 . C A 6322.87 . AB=0.554987;ABP=13.279;AC=4;AF=0.5;AN=8;AO=217;CIGAR=1X;DP=391;DPB=391;DPRA=0;EPP=474.22;EPPR=380.846;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=8385;QR=6826;RO=174;RPL=0;RPP=474.22;RPPR=380.846;RPR=217;RUN=1;SAF=217;SAP=474.22;SAR=0;SRF=174;SRP=380.846;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:136:56,80:56:2178:80:3097:-237.922,0,-155.278 0/1:122:50,72:50:1975:72:2757:-211.542,0,-141.23 0/1:59:34,25:34:1339:25:992:-71.8206,0,-103.012 0/1:74:34,40:34:1334:40:1539:-116.491,0,-98.0578 dDocent_Contig_734 22 . G A 11228.5 . AB=0.781421;ABP=254.782;AC=5;AF=0.625;AN=8;AO=352;CIGAR=1X;DP=434;DPB=434;DPRA=0;EPP=767.369;EPPR=181.071;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=13816;QR=3178;RO=82;RPL=0;RPP=767.369;RPPR=181.071;RPR=352;RUN=1;SAF=352;SAP=767.369;SAR=0;SRF=82;SRP=181.071;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:148:22,126:22:854:126:4941:-400.077,0,-32.6151 0/1:127:35,92:35:1360:92:3632:-288.697,0,-84.4274 0/1:91:23,68:23:893:68:2649:-211.169,0,-53.2853 1/1:68:2,66:2:71:66:2594:-226.873,-13.729,0 dDocent_Contig_735 46 . A T 1032.83 . AB=0.272152;ABP=74.2566;AC=3;AF=0.375;AN=8;AO=43;CIGAR=1X;DP=188;DPB=188;DPRA=1.75556;EPP=96.3836;EPPR=317.874;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1709;QR=5676;RO=145;RPL=0;RPP=96.3836;RPPR=317.874;RPR=43;RUN=1;SAF=43;SAP=96.3836;SAR=0;SRF=145;SRP=317.874;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:46:40,6:40:1579:6:236:-7.76311,0,-128.505 0/1:56:27,29:27:1060:29:1167:-88.4518,0,-78.839 0/1:56:48,8:48:1890:8:306:-11.0343,0,-153.456 0/0:30:30,0:30:1147:0:0:0,-9.0309,-103.505 dDocent_Contig_736 26 . A T 721.407 . AB=0.210843;ABP=123.566;AC=4;AF=0.5;AN=8;AO=35;CIGAR=1X;DP=166;DPB=166;DPRA=0;EPP=79.0118;EPPR=287.473;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.6;PAIREDR=0.946565;PAO=0;PQA=0;PQR=0;PRO=0;QA=1398;QR=5130;RO=131;RPL=0;RPP=79.0118;RPPR=287.473;RPR=35;RUN=1;SAF=35;SAP=79.0118;SAR=0;SRF=131;SRP=287.473;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:64:51,13:51:2011:13:527:-28.5103,0,-161.918 0/1:33:30,3:30:1158:3:120:-1.2537,0,-94.5586 0/1:46:33,13:33:1302:13:506:-32.0363,0,-103.603 0/1:23:17,6:17:659:6:245:-15.5058,0,-52.7125 dDocent_Contig_737 8 . T G 74.8161 . AB=0.11215;ABP=142.817;AC=2;AF=0.25;AN=8;AO=16;CIGAR=1X;DP=215;DPB=215;DPRA=0;EPP=37.7539;EPPR=435.133;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=616;QR=7617;RO=199;RPL=0;RPP=37.7539;RPPR=435.133;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=199;SRP=435.133;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:64:62,2:62:2352:2:78:0,-11.8624,-204.49 0/1:75:67,8:67:2566:8:305:-5.23273,0,-208.558 0/0:44:42,2:42:1628:2:78:0,-5.84185,-139.38 0/1:32:28,4:28:1071:4:155:-4.69248,0,-87.0617 dDocent_Contig_738 43 . T C 16119.9 . AB=0.871859;ABP=481.04;AC=5;AF=0.625;AN=8;AO=501;CIGAR=1X;DP=566;DPB=566;DPRA=0;EPP=1090.92;EPPR=144.156;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=19779;QR=2276;RO=65;RPL=0;RPP=1090.92;RPPR=144.156;RPR=501;RUN=1;SAF=501;SAP=1090.92;SAR=0;SRF=65;SRP=144.156;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:168:14,154:14:485:154:6055:-500.765,-6.5968,0 0/1:151:15,136:15:523:136:5409:-441.196,0,-1.93766 0/1:132:18,114:18:615:114:4500:-365.199,0,-15.9275 0/1:115:18,97:18:653:97:3815:-308.754,0,-24.4786 dDocent_Contig_739 62 . A C 381.587 . AB=0.290909;ABP=23.8959;AC=2;AF=0.25;AN=8;AO=17;CIGAR=1X;DP=85;DPB=85;DPRA=1.84615;EPP=39.9253;EPPR=150.67;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=668;QR=2678;RO=68;RPL=17;RPP=39.9253;RPPR=150.67;RPR=0;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=68;SRP=150.67;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:13:13,0:13:527:0:0:0,-3.91339,-47.7768 0/1:31:23,8:23:936:8:311:-19.0205,0,-75.2083 0/0:17:16,1:16:610:1:41:0,-1.02294,-51.1201 0/1:24:16,8:16:605:8:316:-21.5816,0,-47.5413 dDocent_Contig_740 7 . T G 1240.45 . AB=0.247148;ABP=149.06;AC=4;AF=0.5;AN=8;AO=65;CIGAR=1X2M1X1M1X;DP=263;DPB=263;DPRA=0;EPP=144.156;EPPR=428.619;GTI=0;LEN=1;MEANALT=1.5;MQM=59.9846;MQMR=60;NS=4;NUMALT=1;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2306;QR=7549;RO=196;RPL=0;RPP=144.156;RPPR=428.619;RPR=65;RUN=1;SAF=65;SAP=144.156;SAR=0;SRF=196;SRP=428.619;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:54:39,15:39:1491:15:532:-31.9463,0,-118.206 0|1:121:89,31:89:3427:31:1129:-65.4714,0,-272.119 0|1:55:44,10:44:1707:10:351:-15.2801,0,-137.237 0|1:33:24,9:24:924:9:294:-16.8371,0,-73.542 dDocent_Contig_741 13 . A G 116.363 . AB=0.126437;ABP=108.464;AC=2;AF=0.25;AN=8;AO=14;CIGAR=1X;DP=146;DPB=146;DPRA=2.91111;EPP=33.4109;EPPR=289.645;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=561;QR=5210;RO=132;RPL=0;RPP=33.4109;RPPR=289.645;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=132;SRP=289.645;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:60:52,8:52:2039:8:317:-10.8332,0,-165.639 0/0:44:41,3:41:1611:3:122:0,-1.87283,-133.849 0/1:27:24,3:24:961:3:122:-3.24468,0,-78.6609 0/0:15:15,0:15:599:0:0:0,-4.51545,-54.2487 dDocent_Contig_742 1 . N G 106.325 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.586;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=114;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:114:-10.6309,-0.90309,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_743 10 . G A 179.389 . AB=0.112299;ABP=247.156;AC=2;AF=0.25;AN=8;AO=29;CIGAR=1X;DP=582;DPB=582;DPRA=0.46832;EPP=65.983;EPPR=1203.83;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1164;QR=22102;RO=553;RPL=0;RPP=65.983;RPPR=1203.83;RPR=29;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=553;SRP=1203.83;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:242:242,0:242:9713:0:0:0,-72.8493,-873.538 0/0:153:145,8:145:5795:8:320:0,-16.8908,-492.174 0/1:109:98,11:98:3886:11:443:-7.41364,0,-316.923 0/1:78:68,10:68:2708:10:401:-12.969,0,-220.35 dDocent_Contig_744 73 . T C 1244.72 . AB=0.15299;ABP=755.025;AC=4;AF=0.5;AN=8;AO=110;CIGAR=1X;DP=719;DPB=719;DPRA=0;EPP=241.872;EPPR=1325.44;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3835;QR=21297;RO=609;RPL=110;RPP=241.872;RPPR=1325.44;RPR=0;RUN=1;SAF=110;SAP=241.872;SAR=0;SRF=609;SRP=1325.44;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:231:196,35:196:6870:35:1215:-40.115,0,-548.848 0/1:267:240,27:240:8358:27:941:-4.6288,0,-671.88 0/1:128:93,35:93:3284:35:1229:-72.3827,0,-257.252 0/1:93:80,13:80:2785:13:450:-12.8345,0,-222.896 dDocent_Contig_745 107 . N A 139.587 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=4;CIGAR=1X4I1X;DP=4;DPB=12;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=6.27915;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=151;QR=0;RO=0;RPL=0;RPP=11.6962;RPPR=0;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. 1|1:4:0,4:0:0:4:151:-13.9579,-1.20412,0 .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. dDocent_Contig_746 10 . A G 11061.4 . AB=0.673664;ABP=140.277;AC=4;AF=0.5;AN=8;AO=353;CIGAR=1X;DP=524;DPB=524;DPRA=0;EPP=769.54;EPPR=374.332;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=14103;QR=6826;RO=171;RPL=0;RPP=769.54;RPPR=374.332;RPR=353;RUN=1;SAF=353;SAP=769.54;SAR=0;SRF=171;SRP=374.332;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:200:31,169:31:1243:169:6773:-549.023,0,-51.9358 0/1:143:38,105:38:1524:105:4170:-332.219,0,-94.3545 0/1:92:49,43:49:1942:43:1718:-127.145,0,-147.288 0/1:89:53,36:53:2117:36:1442:-103.239,0,-163.916 dDocent_Contig_747 10 . G A 16595.4 . AB=0.620092;ABP=111.494;AC=4;AF=0.5;AN=8;AO=537;CIGAR=1X;DP=866;DPB=866;DPRA=0;EPP=1169.09;EPPR=717.425;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=21404;QR=13223;RO=329;RPL=0;RPP=1169.09;RPPR=717.425;RPR=537;RUN=1;SAF=537;SAP=1169.09;SAR=0;SRF=329;SRP=717.425;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:375:169,206:169:6770:206:8205:-625.12,0,-496.08 0/1:225:63,162:63:2519:162:6465:-513.837,0,-159.113 0/1:163:58,105:58:2361:105:4183:-327.357,0,-163.559 0/1:103:39,64:39:1573:64:2551:-198.716,0,-110.795 dDocent_Contig_748 7 . A C 2470.2 . AB=0.0512821;ABP=71.2168;AC=0;AF=0;AN=8;AO=2;CIGAR=4X8M1X1M;DP=208;DPB=224.786;DPRA=0;EPP=7.35324;EPPR=152.842;GTI=0;LEN=1;MEANALT=4;MQM=26;MQMR=60;NS=4;NUMALT=4;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=52;QR=2654;RO=69;RPL=0;RPP=7.35324;RPPR=152.842;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=69;SRP=152.842;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:25:13,8,0,0,4:13:500:8,0,0,4:208,0,0,161:-10.1202,0,-38.6276,-14.0335,-41.0359,-55.1334,-14.0335,-41.0359,-55.1334,-55.1334,-0.706861,-27.7624,-41.8518,-41.8518,-40.6477 0|0:61:21,17,4,0,17:21:811:17,4,0,17:395,155,0,643:-46.444,-26.9763,-88.4779,-44.6941,-85.5316,-110.127,-52.7656,-93.5955,-111.331,-119.402,0,-40.89,-58.6104,-66.681,-61.5635 0|0:83:24,5,0,0,53:24:911:5,0,0,53:130,0,0,2038:-160.236,-158.63,-231.823,-167.461,-233.328,-242.162,-167.461,-233.328,-242.162,-242.162,0,-66.0159,-74.8356,-74.8356,-58.881 0|0:39:11,13,0,2,12:11:432:13,0,2,12:282,0,52,473:-35.6886,-21.1058,-52.7371,-38.9999,-56.6505,-74.5629,-35.4667,-53.1254,-71.0303,-70.4282,0,-17.719,-35.6118,-32.0783,-31.9994 dDocent_Contig_749 98 . N G 464.953 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=15;CIGAR=1X;DP=15;DPB=15;DPRA=0;EPP=35.5824;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=13.9038;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=513;QR=0;RO=0;RPL=15;RPP=35.5824;RPPR=0;RPR=0;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:15:0,15:0:0:15:513:-46.4953,-4.51545,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_750 8 . T C 1576.24 . AB=0.250871;ABP=157.73;AC=4;AF=0.5;AN=8;AO=72;CIGAR=1X2M;DP=287;DPB=287;DPRA=0;EPP=159.356;EPPR=445.991;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=2.77556e-17;PAIRED=0.986111;PAIREDR=0.936275;PAO=0;PQA=0;PQR=0;PRO=0;QA=2729;QR=7813;RO=204;RPL=0;RPP=159.356;RPPR=445.991;RPR=72;RUN=1;SAF=72;SAP=159.356;SAR=0;SRF=204;SRP=445.991;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:95:80,0,15:80:3067:0,15:0,568:-22.8599,-46.9423,-298.668,0,-252.105,-247.59 0|1:86:43,10,33:43:1639:10,33:374,1229:-87.651,-69.9709,-201.416,0,-103.833,-124.522 0|1:56:45,0,10:45:1723:0,10:0,386:-18.1681,-31.7144,-173.113,0,-141.413,-138.402 0|1:50:36,0,14:36:1384:0,14:0,546:-34.4349,-45.2719,-158.89,0,-114.006,-109.792 dDocent_Contig_751 106 . N A 66.5064 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=2X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=4.89285;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=70;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. 1|1:2:0,2:0:0:2:70:-6.6474,-0.60206,0 .:.:.:.:.:.:.:. dDocent_Contig_752 25 . G T 437.511 . AB=0.191304;ABP=98.1963;AC=2;AF=0.25;AN=8;AO=25;CIGAR=1X;DP=209;DPB=209;DPRA=0;EPP=57.2971;EPPR=402.561;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1013;QR=7325;RO=184;RPL=0;RPP=57.2971;RPPR=402.561;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=184;SRP=402.561;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:49:40,9:40:1613:9:368:-18.7349,0,-130.65 0/1:66:53,13:53:2062:13:522:-27.4599,0,-165.908 0/0:60:59,1:59:2359:1:41:0,-13.9672,-208.368 0/0:34:32,2:32:1291:2:82:0,-2.45534,-108.673 dDocent_Contig_753 9 . C G 93.2494 . AB=0.128571;ABP=86.8912;AC=1;AF=0.125;AN=8;AO=14;CIGAR=1X;DP=203;DPB=203;DPRA=0;EPP=33.4109;EPPR=413.419;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.928571;PAIREDR=0.962963;PAO=0;PQA=0;PQR=0;PRO=0;QA=533;QR=7278;RO=189;RPL=0;RPP=33.4109;RPPR=413.419;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=189;SRP=413.419;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:70:61,9:61:2365:9:344:-10.2458,0,-191.984 0/0:62:61,1:61:2357:1:39:0,-14.7673,-208.443 0/0:44:41,3:41:1560:3:111:0,-2.89254,-130.312 0/0:27:26,1:26:996:1:39:0,-4.23125,-86.0527 dDocent_Contig_754 7 . T C 6701.71 . AB=0.181994;ABP=1817.75;AC=4;AF=0.5;AN=8;AO=376;CIGAR=1X;DP=2066;DPB=2066;DPRA=0;EPP=819.484;EPPR=3664.11;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.11022e-16;PAIRED=0.994681;PAIREDR=0.964413;PAO=0;PQA=0;PQR=0;PRO=0;QA=14405;QR=63987;RO=1686;RPL=0;RPP=819.484;RPPR=3664.11;RPR=376;RUN=1;SAF=376;SAP=819.484;SAR=0;SRF=1686;SRP=3664.11;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:662:476,185:476:18089:185:7091:-438.978,0,-1428.03 0/1:645:557,86:557:21195:86:3306:-103.922,0,-1712.68 0/1:467:393,73:393:14894:73:2795:-111.199,0,-1199.29 0/1:292:260,32:260:9809:32:1213:-21.5617,0,-794.614 dDocent_Contig_755 85 . T G 538.006 . AB=0.271845;ABP=49.581;AC=3;AF=0.375;AN=8;AO=30;CIGAR=1X;DP=163;DPB=163;DPRA=0;EPP=68.1545;EPPR=291.816;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1038;QR=4555;RO=133;RPL=30;RPP=68.1545;RPPR=291.816;RPR=0;RUN=1;SAF=30;SAP=68.1545;SAR=0;SRF=133;SRP=291.816;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:71:52,19:52:1792:19:664:-38.713,0,-140.191 0/0:60:58,2:58:1961:2:63:0,-12.078,-170.778 0/1:18:11,7:11:384:7:241:-16.608,0,-29.4771 0/1:14:12,2:12:418:2:70:-2.43298,0,-33.7395 dDocent_Contig_756 14 . G A 3470.36 . AB=0.325871;ABP=108.883;AC=4;AF=0.5;AN=8;AO=131;CIGAR=1X1M;DP=402;DPB=402;DPRA=0;EPP=287.473;EPPR=580.622;GTI=0;LEN=1;MEANALT=1.75;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.969466;PAIREDR=0.996241;PAO=0;PQA=0;PQR=0;PRO=0;QA=5247;QR=10511;RO=266;RPL=0;RPP=287.473;RPPR=580.622;RPR=131;RUN=1;SAF=131;SAP=287.473;SAR=0;SRF=266;SRP=580.622;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:183:111,2,70:111:4407:2,70:82,2825:-199.444,-226.09,-588.27,0,-356.004,-341.701 0|1:108:79,0,29:79:3149:0,29:0,1159:-72.0722,-95.8535,-355.159,0,-259.705,-250.975 0|1:72:55,1,16:55:2126:1,16:41,642:-36.3328,-49.5048,-223.777,0,-171.178,-169.746 0|1:39:21,2,16:21:829:2,16:82,621:-44.6756,-44.2266,-111.836,0,-61.4246,-63.3776 dDocent_Contig_757 10 . G A 11353.2 . AB=0.458382;ABP=15.8431;AC=4;AF=0.5;AN=8;AO=391;CIGAR=1X;DP=853;DPB=853;DPRA=0;EPP=852.056;EPPR=988.859;GTI=0;LEN=1;MEANALT=1.75;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=5.55112e-17;PAIRED=1;PAIREDR=0.997797;PAO=0;PQA=0;PQR=0;PRO=0;QA=15515;QR=17969;RO=454;RPL=0;RPP=852.056;RPPR=988.859;RPR=391;RUN=1;SAF=391;SAP=852.056;SAR=0;SRF=454;SRP=988.859;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:240:127,112:127:5047:112:4472:-330.064,0,-381.755 0/1:266:151,115:151:5964:115:4525:-327.125,0,-456.478 0/1:229:126,100:126:4970:100:3990:-290.687,0,-378.797 0/1:118:50,64:50:1988:64:2528:-192.93,0,-144.391 dDocent_Contig_758 25 . T A 31806 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=942;CIGAR=1X;DP=979;DPB=979;DPRA=0;EPP=2048.54;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.997877;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=36655;QR=1286;RO=36;RPL=0;RPP=2048.54;RPPR=81.1833;RPR=942;RUN=1;SAF=942;SAP=2048.54;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:315:5,309:5:191:309:12037:-1065.09,-77.1036,0 1/1:291:14,277:14:498:277:10763:-922.906,-42.4525,0 1/1:234:8,226:8:287:226:8833:-768.344,-44.2663,0 1/1:139:9,130:9:310:130:5022:-423.658,-13.6117,0 dDocent_Contig_759 50 . C T 271.054 . AB=0.134146;ABP=193.676;AC=3;AF=0.375;AN=8;AO=22;CIGAR=1X;DP=197;DPB=197;DPRA=1.65657;EPP=50.7827;EPPR=378.675;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.83815;PAO=0;PQA=0;PQR=0;PRO=0;QA=879;QR=6827;RO=173;RPL=22;RPP=50.7827;RPPR=378.675;RPR=0;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=173;SRP=378.675;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:55:43,10:43:1713:10:399:-19.9238,0,-138.052 0/1:41:37,4:37:1471:4:163:-2.7162,0,-120.297 0/1:68:60,8:60:2326:8:317:-8.42512,0,-189.036 0/0:33:33,0:33:1317:0:0:0,-9.93399,-118.796 dDocent_Contig_761 7 . T A 909.86 . AB=0.0496894;ABP=570.156;AC=0;AF=0;AN=8;AO=16;CIGAR=2X1M1X3M;DP=414;DPB=414;DPRA=0;EPP=37.7539;EPPR=708.739;GTI=0;LEN=1;MEANALT=3.33333;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=607;QR=12720;RO=325;RPL=0;RPP=37.7539;RPPR=708.739;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=325;SRP=708.739;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:136:111,8,16,0:111:4332:8,16,0:303,646,0:-19.87,-28.4466,-382.138,0,-331.289,-351.314,-53.2844,-384.546,-356.13,-409.387 0|0:111:73,7,6,22:73:2869:7,6,22:266,244,873:-49.8955,-50.0587,-283.936,-51.7417,-265.916,-285.924,0,-214.177,-215.863,-229.368 0|0:92:82,0,10,0:82:3212:0,10,0:0,403,0:-8.93568,-33.6201,-297.735,0,-264.516,-261.506,-33.6201,-297.735,-264.516,-297.735 0|0:75:59,1,11,4:59:2307:1,11,4:38,432,152:-17.7742,-32.419,-221.791,0,-186.566,-186.371,-23.0736,-209.629,-177.218,-211.541 dDocent_Contig_762 46 . A G 7075.93 . AB=0.760943;ABP=178.666;AC=4;AF=0.5;AN=8;AO=226;CIGAR=1X;DP=297;DPB=297;DPRA=0;EPP=493.763;EPPR=157.185;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=8909;QR=2831;RO=71;RPL=0;RPP=493.763;RPPR=157.185;RPR=226;RUN=1;SAF=226;SAP=493.763;SAR=0;SRF=71;SRP=157.185;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:98:13,85:13:523:85:3376:-274.391,0,-17.9134 0/1:77:9,68:9:353:68:2638:-214.365,0,-8.94514 0/1:72:37,35:37:1477:35:1380:-102.785,0,-111.503 0/1:50:12,38:12:478:38:1515:-121.542,0,-28.319 dDocent_Contig_763 7 . T A 129.839 . AB=0.142857;ABP=80.5629;AC=1;AF=0.125;AN=8;AO=19;CIGAR=1X;DP=273;DPB=273;DPRA=0;EPP=44.2683;EPPR=554.564;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=734;QR=9693;RO=254;RPL=0;RPP=44.2683;RPPR=554.564;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=254;SRP=554.564;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:73:69,4:69:2626:4:154:0,-7.7416,-222.296 0/1:70:60,10:60:2289:10:388:-14.2058,0,-185.15 0/0:81:77,4:77:2956:4:154:0,-10.15,-251.974 0/0:49:48,1:48:1822:1:38:0,-10.9532,-160.429 dDocent_Contig_764 16 . G A 3045.11 . AB=0.264887;ABP=236.838;AC=4;AF=0.5;AN=8;AO=129;CIGAR=1X;DP=487;DPB=487;DPRA=0;EPP=283.13;EPPR=763.123;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.988827;PAO=0;PQA=0;PQR=0;PRO=0;QA=5061;QR=13830;RO=358;RPL=0;RPP=283.13;RPPR=780.397;RPR=129;RUN=1;SAF=129;SAP=283.13;SAR=0;SRF=356;SRP=763.123;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:118:90,28:90:3484:28:1092:-63.0535,0,-278.14 0/1:146:105,41:105:4048:41:1609:-101.108,0,-320.437 0/1:129:97,32:97:3748:32:1252:-74.1291,0,-298.576 0/1:94:66,28:66:2550:28:1108:-71.7095,0,-201.38 dDocent_Contig_765 74 . C A 45.3807 . AB=0.107692;ABP=89.9026;AC=1;AF=0.125;AN=8;AO=13;CIGAR=1X;DP=173;DPB=173;DPRA=0;EPP=11.1951;EPPR=350.446;GTI=0;LEN=1;MEANALT=1;MQM=57.3846;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=513;QR=6252;RO=160;RPL=13;RPP=31.2394;RPPR=350.446;RPR=0;RUN=1;SAF=3;SAP=11.1951;SAR=10;SRF=160;SRP=350.446;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:65:58,7:58:2266:7:274:-5.45885,0,-184.557 0/0:43:40,3:40:1537:3:120:0,-2.04984,-127.677 0/0:34:32,2:32:1249:2:78:0,-2.83155,-105.278 0/0:31:30,1:30:1200:1:41:0,-5.23736,-104.184 dDocent_Contig_766 68 . G A 77.4964 . AB=0.148936;ABP=53.3238;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=333;DPB=333;DPRA=0.493007;EPP=18.2106;EPPR=710.91;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=253;QR=11572;RO=326;RPL=7;RPP=18.2106;RPPR=710.91;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=326;SRP=710.91;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:110:110,0:110:3877:0:0:0,-33.1133,-349.115 0/0:96:96,0:96:3421:0:0:0,-28.8989,-308.101 0/0:80:80,0:80:2844:0:0:0,-24.0824,-256.196 0/1:47:40,7:40:1430:7:253:-8.97149,0,-114.847 dDocent_Contig_767 10 . G A 1240.98 . AB=0.198675;ABP=241.182;AC=3;AF=0.375;AN=8;AO=61;CIGAR=1X;DP=407;DPB=407;DPRA=0;EPP=135.47;EPPR=754.34;GTI=0;LEN=1;MEANALT=1;MQM=59.7377;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2465;QR=13869;RO=346;RPL=0;RPP=135.47;RPPR=754.34;RPR=61;RUN=1;SAF=61;SAP=135.47;SAR=0;SRF=346;SRP=754.34;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:105:86,19:86:3429:19:774:-38.243,0,-277.041 0/1:110:80,30:80:3235:30:1214:-76.4189,0,-258.084 0/0:105:104,1:104:4150:1:41:0,-27.5136,-369.369 0/1:87:76,11:76:3055:11:436:-13.4029,0,-248.832 dDocent_Contig_768 10 . A G 4630.55 . AB=0.677273;ABP=63.0614;AC=4;AF=0.5;AN=8;AO=149;CIGAR=1X;DP=220;DPB=220;DPRA=0;EPP=326.56;EPPR=157.185;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.805369;PAIREDR=0.830986;PAO=0;PQA=0;PQR=0;PRO=0;QA=5931;QR=2809;RO=71;RPL=0;RPP=326.56;RPPR=157.185;RPR=149;RUN=1;SAF=149;SAP=326.56;SAR=0;SRF=71;SRP=157.185;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:63:25,38:25:992:38:1532:-119.153,0,-70.6146 0/1:56:10,46:10:375:46:1774:-143.024,0,-17.236 0/1:35:12,23:12:471:23:933:-73.7361,0,-32.1983 0/1:66:24,42:24:971:42:1692:-132.631,0,-67.821 dDocent_Contig_769 9 . C T 41.4943 . AB=0.119048;ABP=55.9529;AC=1;AF=0.125;AN=8;AO=10;CIGAR=1X2M1X;DP=247;DPB=247;DPRA=1.28105;EPP=24.725;EPPR=517.649;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=0.6;PAIREDR=0.0759494;PAO=0;PQA=0;PQR=0;PRO=0;QA=393;QR=9236;RO=237;RPL=0;RPP=24.725;RPPR=517.649;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=237;SRP=517.649;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:51:51,0:51:2001:0:0:0,-15.3525,-180.31 0|0:66:64,2:64:2505:2:78:0,-12.4647,-218.221 0|0:88:85,3:85:3275:3:119:0,-15.3952,-283.758 0|1:42:37,5:37:1455:5:196:-5.37125,0,-118.571 dDocent_Contig_770 18 . G T 328.27 . AB=0.0140845;ABP=294.232;AC=0;AF=0;AN=8;AO=8;CIGAR=1M1I5M1X1M;DP=465;DPB=466;DPRA=1.1831;EPP=20.3821;EPPR=923.715;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=1.38778e-17;PAIRED=1;PAIREDR=0.787736;PAO=0;PQA=0;PQR=0;PRO=0;QA=308;QR=16675;RO=424;RPL=0;RPP=20.3821;RPPR=923.715;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=424;SRP=923.715;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:158:147,0,0:147:5772:0,0:0,0:0,-44.2514,-518.983,-44.2514,-518.983,-518.983 0|0:142:119,2,21:119:4704:2,21:69,847:-34.0488,-64.2727,-450.761,0,-381.544,-380.825 0|0:110:103,6,0:103:4035:6,0:239,0:0,-11.1481,-341.327,-31.0061,-343.133,-362.814 0|0:55:55,0,0:55:2164:0,0:0,0:0,-16.5566,-194.96,-16.5566,-194.96,-194.96 dDocent_Contig_771 1 . N G 155.816 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=161;QR=0;RO=0;RPL=0;RPP=11.6962;RPPR=0;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:79:-7.49763,-0.60206,0 ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:82:-7.77968,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_772 10 . G A 2910.21 . AB=0.518717;ABP=3.5793;AC=4;AF=0.5;AN=8;AO=97;CIGAR=1X;DP=187;DPB=187;DPRA=0;EPP=213.643;EPPR=198.443;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3907;QR=3629;RO=90;RPL=0;RPP=213.643;RPPR=198.443;RPR=97;RUN=1;SAF=97;SAP=213.643;SAR=0;SRF=90;SRP=198.443;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:80:41,39:41:1669:39:1581:-118.435,0,-126.345 0/1:69:23,46:23:927:46:1847:-145.666,0,-62.96 0/1:21:18,3:18:723:3:115:-4.40247,0,-59.0738 0/1:17:8,9:8:310:9:364:-28.0064,0,-23.1424 dDocent_Contig_773 21 . T G 41.3432 . AB=0.133333;ABP=20.5268;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1M2D8M1X9M;DP=70;DPB=69.7143;DPRA=0.967742;EPP=7.35324;EPPR=139.813;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=78;QR=2485;RO=63;RPL=0;RPP=7.35324;RPPR=139.813;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=63;SRP=139.813;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:18:17,0,0:17:667:0,0:0,0:0,-5.11751,-60.0688,-5.11751,-60.0688,-60.0688 0|1:15:13,2,0:13:519:2,0:78,0:-2.88802,0,-42.5434,-6.80141,-43.1455,-49.556 0|0:24:21,0,3:21:824:0,3:0,117:-3.68457,-10.0062,-77.7698,0,-68.1535,-67.2504 0|0:13:12,0,0:12:475:0,0:0,0:0,-3.61236,-42.6938,-3.61236,-42.6938,-42.6938 dDocent_Contig_774 9 . G C 1211.16 . 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T G 1039.18 . AB=0.128743;ABP=802.736;AC=4;AF=0.5;AN=8;AO=86;CIGAR=1X;DP=668;DPB=668;DPRA=0;EPP=189.757;EPPR=1264.64;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=2.77556e-17;PAIRED=1;PAIREDR=0.998279;PAO=0;PQA=0;PQR=0;PRO=0;QA=3437;QR=23281;RO=581;RPL=0;RPP=189.757;RPPR=1264.64;RPR=86;RUN=1;SAF=86;SAP=189.757;SAR=0;SRF=581;SRP=1264.64;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:199:180,19:180:7266:19:754:-8.27298,0,-593.642 0/1:146:126,19:126:5043:19:763:-24.9701,0,-409.723 0/1:229:203,26:203:8083:26:1026:-23.6961,0,-658.099 0/1:94:72,22:72:2889:22:894:-52.4682,0,-231.806 dDocent_Contig_781 49 . G A 6730.38 . AB=0.8;ABP=112.453;AC=5;AF=0.625;AN=8;AO=205;CIGAR=1X;DP=234;DPB=234;DPRA=0;EPP=448.162;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=8026;QR=1136;RO=29;RPL=0;RPP=448.162;RPPR=65.983;RPR=205;RUN=1;SAF=205;SAP=448.162;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:65:10,55:10:373:55:2151:-174.214,0,-14.3403 1/1:94:1,93:1:40:93:3629:-322.66,-24.3011,0 0/1:52:10,42:10:401:42:1658:-133.804,0,-20.7958 0/1:23:8,15:8:322:15:588:-46.3277,0,-22.4242 dDocent_Contig_782 11 . G T 2179.93 . AB=0.174101;ABP=644.17;AC=3;AF=0.375;AN=8;AO=127;CIGAR=1X;DP=825;DPB=825;DPRA=0;EPP=278.787;EPPR=1516.53;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.991392;PAO=0;PQA=0;PQR=0;PRO=0;QA=5020;QR=27779;RO=697;RPL=0;RPP=278.787;RPPR=1516.53;RPR=127;RUN=1;SAF=127;SAP=278.787;SAR=0;SRF=697;SRP=1516.53;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:238:204,34:204:8131:34:1349:-50.0213,0,-659.692 0/1:213:187,26:187:7459:26:1033:-29.1416,0,-606.814 0/1:244:183,61:183:7266:61:2401:-142.797,0,-580.131 0/0:130:123,6:123:4923:6:237:0,-17.5322,-421.254 dDocent_Contig_783 115 . A T 374.126 . AB=0.296875;ABP=25.9465;AC=2;AF=0.25;AN=8;AO=23;CIGAR=1X;DP=154;DPB=154;DPRA=3.61538;EPP=52.9542;EPPR=287.473;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=788;QR=4630;RO=131;RPL=0;RPP=52.9542;RPPR=287.473;RPR=23;RUN=1;SAF=0;SAP=52.9542;SAR=23;SRF=0;SRP=287.473;SRR=131;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:77:73,4:73:2588:4:139:0,-10.3266,-220.318 0/1:49:32,17:32:1141:17:583:-38.0438,0,-88.2493 0/1:15:13,2:13:450:2:66:-1.75286,0,-36.3148 0/0:13:13,0:13:451:0:0:0,-3.91339,-40.9206 dDocent_Contig_784 144 . G C 93.0107 . 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AB=0.65;ABP=34.2795;AC=4;AF=0.5;AN=8;AO=104;CIGAR=1X;DP=160;DPB=160;DPRA=0;EPP=228.843;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4139;QR=2235;RO=56;RPL=0;RPP=228.843;RPPR=124.613;RPR=104;RUN=1;SAF=104;SAP=228.843;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:37:14,23:14:566:23:927:-72.5952,0,-40.1436 0/1:36:17,19:17:671:19:739:-55.9903,0,-49.8766 0/1:52:15,37:15:590:37:1472:-117.07,0,-37.7781 0/1:35:10,25:10:408:25:1001:-79.8488,0,-26.5445 dDocent_Contig_786 51 . G A 5053.26 . AB=0.519637;ABP=4.119;AC=4;AF=0.5;AN=8;AO=172;CIGAR=1X;DP=331;DPB=331;DPRA=0;EPP=376.504;EPPR=348.274;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6773;QR=6364;RO=159;RPL=172;RPP=376.504;RPPR=348.274;RPR=0;RUN=1;SAF=172;SAP=376.504;SAR=0;SRF=159;SRP=348.274;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:99:46,53:46:1846:53:2082:-157.772,0,-136.542 0/1:72:18,54:18:717:54:2160:-172.895,0,-43.181 0/1:96:62,34:62:2486:34:1333:-91.3274,0,-194.974 0/1:64:33,31:33:1315:31:1198:-88.8211,0,-99.3483 dDocent_Contig_787 109 . A T 8082.16 . AB=0.756892;ABP=231.722;AC=4;AF=0.5;AN=8;AO=302;CIGAR=1X;DP=399;DPB=399;DPRA=0;EPP=658.795;EPPR=211.472;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=10363;QR=3318;RO=96;RPL=0;RPP=658.795;RPPR=211.472;RPR=302;RUN=1;SAF=0;SAP=658.795;SAR=302;SRF=0;SRP=211.472;SRR=96;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:137:29,107:29:1005:107:3643:-286.963,0,-49.6263 0/1:134:33,101:33:1149:101:3469:-272.1,0,-63.3787 0/1:82:23,59:23:793:59:2035:-158.744,0,-47.0032 0/1:46:11,35:11:371:35:1216:-95.899,0,-19.8686 dDocent_Contig_788 34 . C A 691.123 . AB=0.258929;ABP=59.5461;AC=1;AF=0.125;AN=8;AO=34;CIGAR=1X;DP=353;DPB=353;DPRA=1.48592;EPP=76.8404;EPPR=695.71;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=0.918495;PAO=0;PQA=0;PQR=0;PRO=0;QA=1346;QR=12638;RO=319;RPL=0;RPP=76.8404;RPPR=695.71;RPR=34;RUN=1;SAF=34;SAP=76.8404;SAR=0;SRF=319;SRP=695.71;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:64:64,0:64:2536:0:0:0,-19.2659,-228.385 0/1:112:83,29:83:3285:29:1153:-70.3342,0,-261.996 0/0:99:94,5:94:3707:5:193:0,-12.0626,-315.905 0/0:78:78,0:78:3110:0:0:0,-23.4803,-279.979 dDocent_Contig_789 56 . A G 2592.04 . AB=0.532544;ABP=4.56502;AC=4;AF=0.5;AN=8;AO=90;CIGAR=1X;DP=169;DPB=169;DPRA=0;EPP=198.443;EPPR=174.557;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3493;QR=3037;RO=79;RPL=90;RPP=198.443;RPPR=174.557;RPR=0;RUN=1;SAF=90;SAP=198.443;SAR=0;SRF=79;SRP=174.557;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:43:8,35:8:279:35:1376:-111.157,0,-12.4948 0/1:52:34,18:34:1339:18:711:-48.6608,0,-105.121 0/1:54:27,27:27:1031:27:1066:-79.981,0,-76.8286 0/1:20:10,10:10:388:10:340:-24.895,0,-29.2508 dDocent_Contig_790 12 . T A 2979.27 . AB=0.264831;ABP=229.745;AC=4;AF=0.5;AN=8;AO=125;CIGAR=1X;DP=472;DPB=472;DPRA=0;EPP=274.444;EPPR=756.511;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.994236;PAO=0;PQA=0;PQR=0;PRO=0;QA=4938;QR=13890;RO=347;RPL=0;RPP=274.444;RPPR=756.511;RPR=125;RUN=1;SAF=125;SAP=274.444;SAR=0;SRF=347;SRP=756.511;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:130:94,36:94:3785:36:1452:-91.7919,0,-301.514 0/1:183:144,39:144:5747:39:1521:-82.0473,0,-461.95 0/1:116:77,39:77:3094:39:1531:-103.113,0,-243.611 0/1:43:32,11:32:1264:11:434:-26.4637,0,-101.084 dDocent_Contig_791 33 . T C 7601.33 . AB=0.538144;ABP=9.13967;AC=4;AF=0.5;AN=8;AO=261;CIGAR=1X2M1X;DP=485;DPB=485;DPRA=0;EPP=569.765;EPPR=485.077;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=10121;QR=8730;RO=222;RPL=0;RPP=569.765;RPPR=485.077;RPR=261;RUN=1;SAF=261;SAP=569.765;SAR=0;SRF=222;SRP=485.077;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:143:60,82:60:2366:82:3172:-242.454,0,-169.964 0|1:140:63,77:63:2501:77:2963:-224.665,0,-183.1 0|1:113:58,54:58:2253:54:2106:-155.871,0,-169.077 0|1:89:41,48:41:1610:48:1880:-142.633,0,-118.35 dDocent_Contig_792 27 . T G 225.724 . AB=0.146552;ABP=128.881;AC=2;AF=0.25;AN=8;AO=17;CIGAR=1X;DP=174;DPB=174;DPRA=2;EPP=39.9253;EPPR=343.931;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.878981;PAO=0;PQA=0;PQR=0;PRO=0;QA=658;QR=5964;RO=157;RPL=0;RPP=39.9253;RPPR=343.931;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=157;SRP=343.931;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:55:46,9:46:1765:9:354:-15.6654,0,-142.534 0/1:61:53,8:53:1989:8:304:-9.35066,0,-160.872 0/0:30:30,0:30:1152:0:0:0,-9.0309,-103.97 0/0:28:28,0:28:1058:0:0:0,-8.42884,-95.5171 dDocent_Contig_793 67 . T G 1143.14 . AB=0.225941;ABP=158.929;AC=4;AF=0.5;AN=8;AO=54;CIGAR=1X;DP=239;DPB=239;DPRA=0;EPP=120.27;EPPR=402.561;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=0.981481;PAIREDR=0.951087;PAO=0;PQA=0;PQR=0;PRO=0;QA=2115;QR=7321;RO=184;RPL=54;RPP=120.27;RPPR=402.561;RPR=0;RUN=1;SAF=54;SAP=120.27;SAR=0;SRF=184;SRP=402.561;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:74:58,16:58:2269:16:627:-34.4855,0,-182.107 0/1:79:61,18:61:2436:18:710:-40.4448,0,-195.602 0/1:48:38,10:38:1529:10:405:-22.3612,0,-123.399 0/1:38:27,10:27:1087:10:373:-22.512,0,-86.725 dDocent_Contig_794 18 . C A 175.704 . AB=0.333333;ABP=8.07707;AC=2;AF=0.25;AN=8;AO=7;CIGAR=1X;DP=52;DPB=52;DPRA=0.677419;EPP=18.2106;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=284;QR=1770;RO=45;RPL=0;RPP=18.2106;RPPR=100.727;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:25:25,0:25:958:0:0:0,-7.52575,-86.5044 0/1:8:6,2:6:243:2:80:-5.18333,0,-19.8394 0/1:13:8,5:8:323:5:204:-14.8306,0,-25.5247 0/0:6:6,0:6:246:0:0:0,-1.80618,-22.5201 dDocent_Contig_795 12 . A G 42.0795 . AB=0.138889;ABP=43.7857;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=89;DPB=89;DPRA=2.03774;EPP=13.8677;EPPR=185.414;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=177;QR=3348;RO=84;RPL=0;RPP=13.8677;RPPR=185.414;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=84;SRP=185.414;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:28:28,0:28:1130:0:0:0,-8.42884,-101.982 0/1:36:31,5:31:1236:5:177:-5.42977,0,-100.677 0/0:13:13,0:13:506:0:0:0,-3.91339,-45.878 0/0:12:12,0:12:476:0:0:0,-3.61236,-43.1874 dDocent_Contig_796 15 . C T 13990 . AB=0.499466;ABP=3.01262;AC=4;AF=0.5;AN=8;AO=468;CIGAR=1X;DP=937;DPB=937;DPRA=0;EPP=1019.26;EPPR=1021.43;GTI=0;LEN=1;MEANALT=1;MQM=59.8654;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=18746;QR=18914;RO=469;RPL=0;RPP=1019.26;RPPR=1021.43;RPR=468;RUN=1;SAF=468;SAP=1019.26;SAR=0;SRF=469;SRP=1021.43;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:222:97,125:97:3905:125:5052:-387.61,0,-284.599 0/1:239:104,135:104:4197:135:5413:-415.026,0,-305.723 0/1:285:143,142:143:5769:142:5638:-421.36,0,-433.17 0/1:191:125,66:125:5043:66:2643:-180.49,0,-396.227 dDocent_Contig_797 44 . C T 359.513 . AB=0.139896;ABP=220.394;AC=3;AF=0.375;AN=8;AO=27;CIGAR=1X;DP=238;DPB=238;DPRA=1.42963;EPP=61.6401;EPPR=461.191;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1077;QR=8426;RO=211;RPL=0;RPP=61.6401;RPPR=461.191;RPR=27;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=211;SRP=461.191;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:109:99,10:99:3960:10:400:-3.54615,0,-323.579 0/1:35:26,9:26:1021:9:358:-22.0452,0,-81.6358 0/0:45:45,0:45:1805:0:0:0,-13.5463,-162.66 0/1:49:41,8:41:1640:8:319:-14.3255,0,-133.08 dDocent_Contig_798 156 . A T 1881.54 . AB=0.402367;ABP=17.0028;AC=2;AF=0.25;AN=8;AO=70;CIGAR=1X;DP=321;DPB=321;DPRA=2.09848;EPP=155.013;EPPR=548.05;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2732;QR=9566;RO=251;RPL=0;RPP=155.013;RPPR=548.05;RPR=70;RUN=1;SAF=0;SAP=155.013;SAR=70;SRF=0;SRP=548.05;SRR=251;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:126:67,59:67:2576:59:2321:-171.14,0,-194.079 0/0:108:106,2:106:4061:2:55:0,-27.2904,-360.305 0/0:44:44,0:44:1636:0:0:0,-13.2453,-147.472 0/1:43:34,9:34:1293:9:356:-19.4578,0,-103.703 dDocent_Contig_799 76 . T C 834.933 . AB=0.439024;ABP=5.65844;AC=4;AF=0.5;AN=8;AO=36;CIGAR=1X;DP=82;DPB=82;DPRA=0;EPP=81.1833;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1248;QR=1574;RO=46;RPL=36;RPP=81.1833;RPPR=102.898;RPR=0;RUN=1;SAF=36;SAP=81.1833;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:11,19:11:384:19:658:-50.5136,0,-25.8647 0/1:24:16,8:16:557:8:276:-17.9512,0,-43.2343 0/1:13:8,5:8:278:5:174:-12.0886,0,-21.4446 0/1:15:11,4:11:355:4:140:-8.42948,0,-27.7453 dDocent_Contig_800 15 . C A 32689.2 . AB=0.142857;ABP=584.655;AC=8;AF=1;AN=8;AO=116;CIGAR=1X3M;DP=1163;DPB=1163;DPRA=0;EPP=254.901;EPPR=174.557;GTI=0;LEN=1;MEANALT=2.25;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4614;QR=3134;RO=79;RPL=0;RPP=254.901;RPPR=174.557;RPR=116;RUN=1;SAF=116;SAP=254.901;SAR=0;SRF=79;SRP=174.557;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:338:17,300,21:17:663:300,21:11785,835:-999.951,-35.8207,0,-936.322,-21.5587,-984.492 1|1:390:42,296,52:42:1687:296,52:11682,2079:-980.75,-32.2263,-82.1366,-822.15,0,-945.512 1|1:300:15,265,20:15:588:265,20:10471,787:-888.523,-31.4237,0,-828.306,-15.0399,-870.635 1|1:135:5,106,23:5:196:106,23:4188,913:-402.144,-59.0421,-43.2491,-328.493,0,-337.687 dDocent_Contig_801 209 . N G 367.958 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=10;CIGAR=1X;DP=10;DPB=10;DPRA=0;EPP=24.725;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=391;QR=0;RO=0;RPL=10;RPP=24.725;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:5:0,5:0:0:5:201:-18.4705,-1.50515,0 1/1:4:0,4:0:0:4:152:-14.0483,-1.20412,0 1/1:1:0,1:0:0:1:38:-3.79727,-0.30103,0 dDocent_Contig_802 32 . A G 1302.86 . AB=0.278351;ABP=85.7949;AC=3;AF=0.375;AN=8;AO=55;CIGAR=1X9M;DP=227;DPB=226.2;DPRA=0;EPP=122.441;EPPR=363.475;GTI=0;LEN=1;MEANALT=1.75;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2158;QR=6525;RO=166;RPL=0;RPP=122.441;RPPR=363.475;RPR=55;RUN=1;SAF=55;SAP=122.441;SAR=0;SRF=166;SRP=363.475;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:67:47,0,19:47:1848:0,19:0,734:-46.1196,-60.268,-212.282,0,-152.021,-146.302 0|1:50:25,4,21:25:967:4,21:157,842:-61.8525,-56.4668,-134.68,0,-66.5062,-73.098 0|1:77:62,0,14:62:2443:0,14:0,547:-26.2804,-44.9443,-245.932,0,-200.971,-196.756 0|0:33:32,0,1:32:1267:0,1:0,35:0,-9.63296,-113.958,-6.43536,-111.112,-110.811 dDocent_Contig_803 122 . A C 74.4096 . AB=0;ABP=0;AC=4;AF=0.5;AN=8;AO=2;CIGAR=1M1X2M1X2M1X1M7I2M1X2M1X;DP=63;DPB=72.2667;DPRA=0.5;EPP=7.35324;EPPR=27.4756;GTI=0;LEN=1;MEANALT=6;MQM=56;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.866667;PAO=6.5;PQA=83;PQR=386;PRO=14.5;QA=75;QR=577;RO=15;RPL=2;RPP=7.35324;RPPR=20.5268;RPR=0;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=1;SRP=27.4756;SRR=14;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:9:0,2:0:0:2:75:-6.73867,-0.60206,0 0|0:29:10,0:10:385:0:0:0,-3.0103,-34.6445 1|1:15:0,0:0:0:0:0:0,0,0 0|0:10:5,0:5:192:0:0:0,-1.50515,-17.2839 dDocent_Contig_804 123 . C G 9014.29 . AB=0.506311;ABP=3.25699;AC=4;AF=0.5;AN=8;AO=361;CIGAR=1X;DP=713;DPB=713;DPRA=0;EPP=786.912;EPPR=767.369;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=12451;QR=12113;RO=352;RPL=0;RPP=786.912;RPPR=767.369;RPR=361;RUN=1;SAF=0;SAP=786.912;SAR=361;SRF=0;SRP=767.369;SRR=352;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:245:150,95:150:5142:95:3277:-221.412,0,-389.2 0/1:204:84,120:84:2891:120:4148:-312.117,0,-199.028 0/1:153:62,91:62:2142:91:3106:-233.721,0,-146.996 0/1:111:56,55:56:1938:55:1920:-139.668,0,-141.287 dDocent_Contig_807 42 . G A 88.1732 . AB=0.145833;ABP=55.3066;AC=2;AF=0.25;AN=8;AO=8;CIGAR=1X;DP=109;DPB=109;DPRA=1.24638;EPP=20.3821;EPPR=222.329;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=318;QR=3979;RO=101;RPL=0;RPP=20.3821;RPPR=222.329;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=101;SRP=222.329;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:23:23,0:23:901:0:0:0,-6.92369,-81.3939 0/1:17:15,2:15:581:2:81:-2.56822,0,-47.5052 0/0:38:37,1:37:1464:1:41:0,-7.34457,-127.92 0/1:31:26,5:26:1033:5:196:-8.68312,0,-83.9328 dDocent_Contig_808 25 . A G 60.4699 . AB=0.147059;ABP=39.7976;AC=2;AF=0.25;AN=8;AO=5;CIGAR=1X;DP=76;DPB=76;DPRA=0.809524;EPP=13.8677;EPPR=157.185;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=199;QR=2713;RO=71;RPL=0;RPP=13.8677;RPPR=157.185;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=71;SRP=157.185;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:12,3:12:469:3:118:-6.48706,0,-38.0388 0/0:29:29,0:29:1098:0:0:0,-8.72987,-99.0971 0/1:19:17,2:17:640:2:81:-1.96616,0,-52.1985 0/0:13:13,0:13:506:0:0:0,-3.91339,-45.8831 dDocent_Contig_809 22 . A G 3471.87 . AB=0.454887;ABP=7.71244;AC=4;AF=0.5;AN=8;AO=121;CIGAR=1X;DP=266;DPB=266;DPRA=0;EPP=265.758;EPPR=317.874;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.826446;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4796;QR=5805;RO=145;RPL=0;RPP=265.758;RPPR=317.874;RPR=121;RUN=1;SAF=121;SAP=265.758;SAR=0;SRF=145;SRP=317.874;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:90:42,48:42:1672:48:1893:-143.483,0,-123.614 0/1:113:65,48:65:2605:48:1905:-137.644,0,-200.564 0/1:40:30,10:30:1204:10:398:-24.1347,0,-96.5952 0/1:23:8,15:8:324:15:600:-47.4147,0,-22.6057 dDocent_Contig_810 82 . G A 97.7664 . AB=0.116751;ABP=254.339;AC=3;AF=0.375;AN=8;AO=23;CIGAR=1X;DP=234;DPB=234;DPRA=1.77477;EPP=52.9542;EPPR=459.02;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=798;QR=7144;RO=210;RPL=23;RPP=52.9542;RPPR=459.02;RPR=0;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=210;SRP=459.02;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:70:60,9:60:2042:9:314:-7.72896,0,-163.211 0/1:76:68,8:68:2295:8:279:-2.57072,0,-183.939 0/0:37:37,0:37:1269:0:0:0,-11.1381,-114.512 0/1:51:45,6:45:1538:6:205:-3.43261,0,-123.361 dDocent_Contig_811 117 . G A 66.1223 . AB=0.217391;ABP=18.9659;AC=2;AF=0.25;AN=8;AO=5;CIGAR=1X;DP=45;DPB=45;DPRA=1.04545;EPP=13.8677;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=0.4;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=170;QR=1364;RO=40;RPL=0;RPP=13.8677;RPPR=89.8692;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=89.8692;SRR=40;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:15:15,0:15:509:0:0:0,-4.51545,-46.1338 0/1:11:9,2:9:306:2:70:-3.33607,0,-24.5594 0/1:12:9,3:9:310:3:100:-5.71817,0,-24.6219 0/0:7:7,0:7:239:0:0:0,-2.10721,-21.844 dDocent_Contig_812 39 . T G 10010.8 . AB=0.761329;ABP=199.355;AC=5;AF=0.625;AN=8;AO=315;CIGAR=1X;DP=398;DPB=398;DPRA=0;EPP=687.024;EPPR=183.243;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=12438;QR=3329;RO=83;RPL=0;RPP=687.024;RPPR=183.243;RPR=315;RUN=1;SAF=315;SAP=687.024;SAR=0;SRF=83;SRP=183.243;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:143:16,127:16:644:127:4984:-405.416,0,-15.2472 0/1:137:53,84:53:2119:84:3344:-259.771,0,-149.647 1/1:67:4,63:4:163:63:2485:-208.727,-5.11058,0 0/1:51:10,41:10:403:41:1625:-131.134,0,-21.277 dDocent_Contig_813 174 . A T 30.1 . AB=0.121212;ABP=44.1367;AC=2;AF=0.25;AN=8;AO=4;CIGAR=1X;DP=84;DPB=84;DPRA=0.647059;EPP=11.6962;EPPR=176.728;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=162;QR=3184;RO=80;RPL=4;RPP=11.6962;RPPR=176.728;RPR=0;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=176.728;SRR=80;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:15,2:15:590:2:80:-2.47428,0,-48.3197 0/0:31:31,0:31:1235:0:0:0,-9.33193,-111.418 0/0:20:20,0:20:797:0:0:0,-6.0206,-72.0436 0/1:16:14,2:14:562:2:82:-2.9632,0,-46.1051 dDocent_Contig_814 10 . A C 2017.44 . AB=0.134571;ABP=1002.84;AC=3;AF=0.375;AN=8;AO=116;CIGAR=1M1X5M;DP=862;DPB=862.571;DPRA=0;EPP=254.901;EPPR=1355.84;GTI=0;LEN=1;MEANALT=5;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=2.22045e-16;PAIRED=0.732759;PAIREDR=0.905297;PAO=0;PQA=0;PQR=0;PRO=0;QA=4628;QR=24215;RO=623;RPL=0;RPP=254.901;RPPR=1355.84;RPR=116;RUN=1;SAF=116;SAP=254.901;SAR=0;SRF=623;SRP=1355.84;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:245:185,6,28,22:185:7162:6,28,22:238,1046,874:-29.8942,-65.9952,-652.504,0,-568.717,-579.877,-13.6316,-582.363,-516.359,-595.329 0|1:216:146,8,11,43:146:5656:8,11,43:316,421,1719:-97.6441,-115.823,-578.026,-107.049,-545.887,-568.347,0,-438.843,-430.068,-451.671 0|1:240:180,10,18,28:180:7021:10,18,28:385,683,1106:-36.8182,-59.9502,-634.049,-35.0162,-581.071,-606.706,0,-546.065,-521.13,-568.69 0|1:161:112,10,14,23:112:4376:10,14,23:390,542,929:-42.8773,-44.7083,-401.447,-32.0717,-359.934,-387.606,0,-327.871,-315.233,-352.833 dDocent_Contig_816 32 . T A 714.583 . AB=0.201299;ABP=122.357;AC=3;AF=0.375;AN=8;AO=31;CIGAR=2X;DP=154;DPB=154;DPRA=0;EPP=70.3259;EPPR=241.872;GTI=0;LEN=1;MEANALT=1.75;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.967742;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1211;QR=4306;RO=110;RPL=0;RPP=70.3259;RPPR=241.872;RPR=31;RUN=1;SAF=31;SAP=70.3259;SAR=0;SRF=110;SRP=241.872;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:41:32,9,0:32:1235:9,0:351,0:-19.6041,0,-99.0867,-29.237,-101.796,-130.644 0|1:51:38,12,1:38:1491:12,1:462,41:-26.4599,0,-118.98,-34.5131,-119.208,-156.827 0|0:41:28,5,8:28:1093:5,8:199,322:-18.1118,-10.1567,-98.4765,0,-73.4411,-87.4197 0|1:21:12,5,4:12:487:5,4:199,160:-12.7719,0,-38.6632,-3.2036,-26.99,-42.1689 dDocent_Contig_817 19 . A G 1398.9 . AB=0.28866;ABP=78.2731;AC=4;AF=0.5;AN=8;AO=56;CIGAR=1X;DP=194;DPB=194;DPRA=0;EPP=124.613;EPPR=302.673;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.946429;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2249;QR=5502;RO=138;RPL=0;RPP=124.613;RPPR=302.673;RPR=56;RUN=1;SAF=56;SAP=124.613;SAR=0;SRF=138;SRP=302.673;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:74:63,11:63:2500:11:438:-17.4961,0,-202.87 0/1:69:44,25:44:1765:25:1003:-69.7933,0,-138.298 0/1:38:23,15:23:916:15:604:-43.2592,0,-71.3031 0/1:13:8,5:8:321:5:204:-14.8306,0,-25.3445 dDocent_Contig_818 19 . T C 940.016 . AB=0.182482;ABP=242.95;AC=3;AF=0.375;AN=8;AO=52;CIGAR=1X;DP=312;DPB=312;DPRA=0;EPP=115.927;EPPR=567.593;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2074;QR=10361;RO=260;RPL=0;RPP=115.927;RPPR=567.593;RPR=52;RUN=1;SAF=52;SAP=115.927;SAR=0;SRF=260;SRP=567.593;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:129:101,28:101:4033:28:1112:-61.5282,0,-324.108 0/1:75:63,12:63:2517:12:487:-21.6038,0,-204.085 0/1:70:60,10:60:2385:10:395:-14.8362,0,-193.728 0/0:38:36,2:36:1426:2:80:0,-3.84756,-121.002 dDocent_Contig_819 84 . G C 73.0175 . AB=0.166667;ABP=37.7539;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=151;DPB=151;DPRA=0.911392;EPP=20.3821;EPPR=313.531;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=274;QR=4836;RO=143;RPL=8;RPP=20.3821;RPPR=313.531;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=143;SRP=313.531;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:30,6:30:1036:6:208:-8.22256,0,-82.7141 0/0:42:42,0:42:1378:0:0:0,-12.6433,-124.305 0/0:36:34,2:34:1176:2:66:0,-4.5689,-99.8786 0/0:37:37,0:37:1246:0:0:0,-11.1381,-112.437 dDocent_Contig_820 98 . N A 4184.95 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=138;CIGAR=1X;DP=138;DPB=138;DPRA=0;EPP=302.673;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=4630;QR=0;RO=0;RPL=138;RPP=302.673;RPPR=0;RPR=0;RUN=1;SAF=138;SAP=302.673;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:49:0,49:0:0:49:1612:-145.358,-14.7505,0 1/1:33:0,33:0:0:33:1117:-100.832,-9.93399,0 1/1:24:0,24:0:0:24:802:-72.4864,-7.22472,0 1/1:32:0,32:0:0:32:1099:-99.2171,-9.63296,0 dDocent_Contig_821 9 . C A 197.367 . AB=0.114407;ABP=307.789;AC=1;AF=0.125;AN=8;AO=58;CIGAR=1X;DP=773;DPB=773;DPRA=0;EPP=128.956;EPPR=1555.61;GTI=0;LEN=1;MEANALT=1;MQM=59.5517;MQMR=59.7622;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.872727;PAO=0;PQA=0;PQR=0;PRO=0;QA=2227;QR=27533;RO=715;RPL=0;RPP=128.956;RPPR=1555.61;RPR=58;RUN=1;SAF=58;SAP=128.956;SAR=0;SRF=715;SRP=1555.61;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:240:221,19:221:8489:19:735:0,-5.76588,-697.277 0/1:236:209,27:209:8031:27:1025:-20.9586,0,-643.52 0/0:161:153,8:153:5929:8:311:0,-20.1115,-505.189 0/0:136:132,4:132:5084:4:156:0,-26.5228,-443.123 dDocent_Contig_822 154 . C A 379.929 . AB=0.348837;ABP=11.5447;AC=2;AF=0.25;AN=8;AO=16;CIGAR=1X;DP=80;DPB=80;DPRA=1.57143;EPP=37.7539;EPPR=141.985;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=626;QR=2525;RO=64;RPL=0;RPP=37.7539;RPPR=141.985;RPR=16;RUN=1;SAF=0;SAP=37.7539;SAR=16;SRF=0;SRP=141.985;SRR=64;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:14:14,0:14:550:0:0:0,-4.21442,-49.8397 0/0:23:22,1:22:877:1:41:0,-2.82912,-75.1426 0/1:29:18,11:18:717:11:422:-29.5926,0,-56.1282 0/1:14:10,4:10:381:4:163:-10.844,0,-30.4222 dDocent_Contig_823 9 . A C 3522.27 . AB=0.23152;ABP=451.918;AC=4;AF=0.5;AN=8;AO=166;CIGAR=1X;DP=717;DPB=717;DPRA=0;EPP=363.475;EPPR=1199.49;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6361;QR=21110;RO=551;RPL=0;RPP=363.475;RPPR=1199.49;RPR=166;RUN=1;SAF=166;SAP=363.475;SAR=0;SRF=551;SRP=1199.49;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:196:154,42:154:5894:42:1591:-84.4529,0,-471.412 0/1:238:197,41:197:7546:41:1591:-71.8099,0,-607.33 0/1:164:124,40:124:4755:40:1515:-87.2547,0,-378.62 0/1:119:76,43:76:2915:43:1664:-114.199,0,-226.698 dDocent_Contig_824 9 . C A 193.498 . AB=0.243243;ABP=24.1968;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X;DP=124;DPB=124;DPRA=1.27586;EPP=22.5536;EPPR=252.73;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=345;QR=4409;RO=115;RPL=0;RPP=22.5536;RPPR=252.73;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=115;SRP=252.73;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:37:28,9:28:1075:9:345:-20.2706,0,-85.9173 0/0:60:60,0:60:2304:0:0:0,-18.0618,-207.574 0/0:14:14,0:14:534:0:0:0,-4.21442,-48.4038 0/0:13:13,0:13:496:0:0:0,-3.91339,-44.9854 dDocent_Contig_825 187 . A T 300.499 . AB=0.158333;ABP=124.685;AC=1;AF=0.125;AN=8;AO=19;CIGAR=1X;DP=360;DPB=360;DPRA=1.5;EPP=44.2683;EPPR=743.482;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=742;QR=13589;RO=341;RPL=19;RPP=44.2683;RPPR=743.482;RPR=0;RUN=1;SAF=0;SAP=44.2683;SAR=19;SRF=0;SRP=743.482;SRR=341;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:120:101,19:101:4033:19:742:-30.9707,0,-326.816 0/0:113:113,0:113:4540:0:0:0,-34.0164,-408.506 0/0:79:79,0:79:3109:0:0:0,-23.7814,-279.867 0/0:48:48,0:48:1907:0:0:0,-14.4494,-171.813 dDocent_Contig_826 16 . G A 3133.01 . AB=0.767442;ABP=83.1528;AC=5;AF=0.625;AN=8;AO=120;CIGAR=1X4M;DP=152;DPB=152;DPRA=0;EPP=263.587;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1.75;MQM=60;MQMR=59.64;NS=4;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=4001;QR=829;RO=25;RPL=0;RPP=263.587;RPPR=57.2971;RPR=120;RUN=1;SAF=0;SAP=263.587;SAR=120;SRF=0;SRP=57.2971;SRR=25;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:43:7,4,32:7:229:4,32:131,1055:-83.1801,-74.7048,-91.9976,0,-7.91425,-8.86417 0|1:41:6,0,32:6:202:0,32:0,1100:-87.5381,-89.3443,-105.711,0,-16.3725,-6.73952 0|1:45:10,0,35:10:328:0,35:0,1167:-91.7815,-94.7918,-121.289,0,-26.8264,-16.2904 1|1:23:2,0,21:2:70:0,21:0,679:-54.7661,-55.3682,-61.066,-0.276294,-6.32163,0 dDocent_Contig_827 109 . A C 668.323 . AB=0.32;ABP=31.1526;AC=2;AF=0.25;AN=8;AO=35;CIGAR=1X;DP=152;DPB=152;DPRA=4.73333;EPP=79.0118;EPPR=257.073;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.991453;PAO=0;PQA=0;PQR=0;PRO=0;QA=1200;QR=3966;RO=117;RPL=0;RPP=79.0118;RPPR=257.073;RPR=35;RUN=1;SAF=0;SAP=79.0118;SAR=35;SRF=0;SRP=257.073;SRR=117;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:68:48,20:48:1607:20:688:-41.7716,0,-124.446 0/0:10:10,0:10:342:0:0:0,-3.0103,-31.111 0/0:42:39,3:39:1329:3:103:0,-3.03329,-110.298 0/1:32:20,12:20:688:12:409:-27.5045,0,-52.6079 dDocent_Contig_828 12 . A T 704.048 . AB=0.196629;ABP=145.303;AC=3;AF=0.375;AN=8;AO=35;CIGAR=1X;DP=197;DPB=197;DPRA=3.12281;EPP=79.0118;EPPR=354.789;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=0.742857;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1410;QR=6465;RO=162;RPL=0;RPP=79.0118;RPPR=354.789;RPR=35;RUN=1;SAF=35;SAP=79.0118;SAR=0;SRF=162;SRP=354.789;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:54:44,10:44:1759:10:408:-20.825,0,-142.27 0/1:57:48,9:48:1910:9:363:-15.8745,0,-154.944 0/1:67:51,16:51:2031:16:639:-37.672,0,-162.814 0/0:19:19,0:19:765:0:0:0,-5.71957,-69.1658 dDocent_Contig_829 121 . G C 36.6486 . AB=0.1875;ABP=16.582;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=132;DPB=132;DPRA=1;EPP=13.8677;EPPR=278.787;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=173;QR=4527;RO=127;RPL=0;RPP=13.8677;RPPR=278.787;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=278.787;SRR=127;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:50:48,2:48:1694:2:69:0,-8.49884,-146.18 0/0:48:48,0:48:1718:0:0:0,-14.4494,-154.897 0/0:18:18,0:18:654:0:0:0,-5.41854,-59.1911 0/1:16:13,3:13:461:3:104:-4.88661,0,-37.0076 dDocent_Contig_830 40 . G A 674.232 . AB=0.216216;ABP=106.537;AC=2;AF=0.25;AN=8;AO=33;CIGAR=1X;DP=197;DPB=197;DPRA=2.29333;EPP=74.6689;EPPR=359.132;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1305;QR=6447;RO=164;RPL=0;RPP=74.6689;RPPR=359.132;RPR=33;RUN=1;SAF=33;SAP=74.6689;SAR=0;SRF=164;SRP=359.132;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:55:35,20:35:1330:20:781:-54.0414,0,-103.392 0/1:93:81,12:81:3213:12:483:-15.8255,0,-261.24 0/0:25:25,0:25:992:0:0:0,-7.52575,-89.5796 0/0:24:23,1:23:912:1:41:0,-3.13015,-78.2917 dDocent_Contig_831 118 . C A 736.574 . AB=0.434783;ABP=5.55942;AC=4;AF=0.5;AN=8;AO=30;CIGAR=1X;DP=69;DPB=69;DPRA=0;EPP=68.1545;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.7179;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.974359;PAO=0;PQA=0;PQR=0;PRO=0;QA=1081;QR=1374;RO=39;RPL=0;RPP=68.1545;RPPR=87.6977;RPR=30;RUN=1;SAF=0;SAP=68.1545;SAR=30;SRF=0;SRP=87.6977;SRR=39;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:10,1:10:333:1:36:-0.286945,0,-26.9628 0/1:27:10,17:10:357:17:617:-47.7365,0,-24.3432 0/1:21:13,8:13:467:8:287:-19.8549,0,-36.0465 0/1:10:6,4:6:217:4:141:-10.0264,0,-16.8715 dDocent_Contig_832 42 . A G 164.236 . AB=0.123188;ABP=173.203;AC=1;AF=0.125;AN=8;AO=20;CIGAR=1X;DP=577;DPB=577;DPRA=0.648571;EPP=46.4397;EPPR=1195.21;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.992819;PAO=0;PQA=0;PQR=0;PRO=0;QA=771;QR=21228;RO=557;RPL=0;RPP=46.4397;RPPR=1178.03;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=555;SRP=1195.21;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:170:170,0:170:6444:0:0:0,-51.1751,-579.846 0/0:180:180,0:180:6919:0:0:0,-54.1854,-622.547 0/1:138:121,17:121:4646:17:654:-17.6454,0,-376.611 0/0:89:86,3:86:3219:3:117:0,-15.8813,-278.934 dDocent_Contig_833 111 . T A 5476.22 . AB=0.201954;ABP=239.885;AC=2;AF=0.25;AN=8;AO=62;CIGAR=1X1M1X;DP=307;DPB=307;DPRA=0;EPP=137.642;EPPR=133.299;GTI=0;LEN=1;MEANALT=2;MQM=49.6452;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.112903;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2129;QR=1990;RO=60;RPL=0;RPP=137.642;RPPR=133.299;RPR=62;RUN=1;SAF=0;SAP=137.642;SAR=62;SRF=0;SRP=133.299;SRR=60;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:106:25,16,65:25:804:16,65:547,2278:-177.854,-142.075,-202.062,0,-21.4912,-45.2369 1|0:77:9,14,54:9:303:14,54:465,1836:-159.109,-124.368,-144.705,-12.8937,0,-21.1925 1|0:83:12,24,47:12:402:24,47:841,1675:-165.442,-104,-129.326,-32.5067,0,-50.9131 0|0:41:14,8,19:14:481:8,19:276,674:-50.7067,-32.5629,-69.2104,0,-16.6985,-33.3406 dDocent_Contig_834 61 . G A 7344.17 . AB=0.177258;ABP=273.529;AC=2;AF=0.25;AN=8;AO=53;CIGAR=1X2M1X1M1X;DP=299;DPB=299;DPRA=0;EPP=118.098;EPPR=105.07;GTI=0;LEN=1;MEANALT=2.75;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2029;QR=1775;RO=47;RPL=53;RPP=118.098;RPPR=105.07;RPR=0;RUN=1;SAF=53;SAP=118.098;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:127:19,8,100:19:724:8,100:303,3927:-317.236,-298.117,-355.097,0,-34.5523,-29.2887 0|0:65:23,2,39:23:855:2,39:79,1550:-120.782,-121.205,-190.57,0,-63.5427,-58.3062 1|0:73:5,30,36:5:196:30,36:1166,1416:-194.677,-100.371,-107.459,-79.7093,0,-84.9918 1|0:34:0,13,21:0:0:13,21:481,821:-107.211,-67.878,-63.9646,-39.7109,0,-33.3893 dDocent_Contig_835 98 . N G 143.733 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=5;CIGAR=1X;DP=5;DPB=5;DPRA=0;EPP=13.8677;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=150;QR=0;RO=0;RPL=5;RPP=13.8677;RPPR=0;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:105:-9.79616,-0.90309,0 1/1:2:0,2:0:0:2:45:-4.27369,-0.60206,0 dDocent_Contig_836 12 . G A 4616.79 . AB=0.248684;ABP=419.944;AC=4;AF=0.5;AN=8;AO=189;CIGAR=1X5M;DP=760;DPB=759.833;DPRA=0;EPP=413.419;EPPR=1004.06;GTI=0;LEN=1;MEANALT=5.75;MQM=60;MQMR=60;NS=4;NUMALT=4;ODDS=1.11022e-16;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7372;QR=17885;RO=461;RPL=0;RPP=413.419;RPPR=1004.06;RPR=189;RUN=1;SAF=189;SAP=413.419;SAR=0;SRF=461;SRP=1004.06;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:274:170,6,0,0,77:170:6566:6,0,0,77:237,0,0,2991:-194.568,-226.24,-763.652,-245.743,-765.458,-784.961,-245.743,-765.458,-784.961,-784.961,0,-519.711,-539.214,-539.214,-516.034 0|1:274:178,23,3,19,45:178:6954:23,3,19,45:884,120,758,1775:-92.4551,-73.4763,-638.213,-136.153,-635.252,-706.913,-83.6108,-582.71,-645.389,-649.555,0,-499.099,-561.778,-509.236,-558.117 0|1:123:57,8,3,0,48:57:2185:8,3,0,48:315,118,0,1864:-136.003,-127.245,-304.157,-143.454,-296.858,-321.87,-153.161,-306.565,-322.773,-332.48,0,-153.413,-169.623,-179.33,-164.88 0|1:89:56,6,5,0,19:56:2180:6,5,0,19:232,190,0,742:-44.1435,-41.946,-219.298,-45.4205,-205.523,-223.073,-61.0012,-221.104,-224.578,-240.159,0,-160.109,-163.583,-179.164,-173.445 dDocent_Contig_837 209 . N G 109.109 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.586;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=117;QR=0;RO=0;RPL=3;RPP=9.52472;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:117:-10.9093,-0.90309,0 dDocent_Contig_838 1 . N G 68.3849 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=3.0103;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=4.89285;PAIRED=0.5;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=72;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=1;SAP=3.0103;SAR=1;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:72:-6.83524,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_839 18 . T C 291.011 . AB=0.122881;ABP=294.54;AC=2;AF=0.25;AN=8;AO=35;CIGAR=1X;DP=349;DPB=349;DPRA=0;EPP=79.0118;EPPR=684.853;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1377;QR=12528;RO=314;RPL=0;RPP=79.0118;RPPR=684.853;RPR=35;RUN=1;SAF=35;SAP=79.0118;SAR=0;SRF=314;SRP=684.853;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:157:135,22:135:5404:22:850:-29.5368,0,-438.931 0/0:68:64,4:64:2553:4:163:0,-5.41161,-214.849 0/1:79:72,7:72:2883:7:282:-1.97101,0,-235.788 0/0:45:43,2:43:1688:2:82:0,-5.76667,-144.366 dDocent_Contig_840 209 . N G 60.818 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=4.89285;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=64;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:64:-6.07855,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_841 1 . N G 62.6795 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=4.89285;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=66;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:66:-6.26471,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_842 7 . T C 258.379 . AB=0.357143;ABP=7.97367;AC=1;AF=0.125;AN=8;AO=11;CIGAR=1X;DP=94;DPB=94;DPRA=1.2381;EPP=26.8965;EPPR=183.243;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=426;QR=3201;RO=83;RPL=0;RPP=26.8965;RPPR=183.243;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=83;SRP=183.243;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:18,10:18:692:10:387:-26.7587,0,-54.1842 0/0:21:21,0:21:808:0:0:0,-6.32163,-73.0449 0/0:21:21,0:21:809:0:0:0,-6.32163,-73.1342 0/0:24:23,1:23:892:1:39:0,-3.32816,-76.703 dDocent_Contig_843 170 . C T 2516.49 . AB=0.536232;ABP=4.58383;AC=5;AF=0.625;AN=8;AO=86;CIGAR=1X;DP=150;DPB=150;DPRA=0;EPP=189.757;EPPR=141.985;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3288;QR=2485;RO=64;RPL=86;RPP=189.757;RPPR=141.985;RPR=0;RUN=1;SAF=0;SAP=189.757;SAR=86;SRF=0;SRP=141.985;SRR=64;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:50:22,28:22:860:28:1074:-81.9025,0,-62.6589 0/1:64:34,30:34:1307:30:1152:-84.6943,0,-98.6237 0/1:24:8,16:8:318:16:638:-50.532,0,-21.7605 1/1:12:0,12:0:0:12:424:-38.4873,-3.61236,0 dDocent_Contig_844 33 . T G 5764.27 . AB=0.697761;ABP=94.0501;AC=4;AF=0.5;AN=8;AO=187;CIGAR=2X;DP=268;DPB=268;DPRA=0;EPP=409.076;EPPR=170.214;GTI=0;LEN=1;MEANALT=1.75;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7352;QR=3086;RO=77;RPL=0;RPP=409.076;RPPR=170.214;RPR=187;RUN=1;SAF=187;SAP=409.076;SAR=0;SRF=77;SRP=170.214;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:54:5,49:5:199:49:1956:-159.979,0,-2.03182 0|1:59:23,34:23:929:34:1342:-103.5,0,-66.364 0|1:86:32,53:32:1275:53:2097:-162.939,0,-89.0324 0|1:69:17,51:17:683:51:1957:-155.466,0,-40.9311 dDocent_Contig_845 17 . C T 766.894 . AB=0.220126;ABP=111.188;AC=3;AF=0.375;AN=8;AO=38;CIGAR=1X;DP=195;DPB=195;DPRA=0;EPP=85.5263;EPPR=343.931;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1511;QR=6287;RO=157;RPL=0;RPP=85.5263;RPPR=343.931;RPR=38;RUN=1;SAF=38;SAP=85.5263;SAR=0;SRF=157;SRP=343.931;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:53:37,16:37:1488:16:646:-42.5191,0,-118.206 0/1:81:64,17:64:2547:17:674:-36.6075,0,-204.981 0/0:36:33,3:33:1326:3:109:0,-0.671068,-109.431 0/1:25:23,2:23:926:2:82:-0.253928,0,-76.1178 dDocent_Contig_846 88 . A G 2690.72 . AB=0.334204;ABP=94.4559;AC=3;AF=0.375;AN=8;AO=134;CIGAR=1X;DP=582;DPB=582;DPRA=0;EPP=293.988;EPPR=973.658;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4514;QR=15523;RO=447;RPL=134;RPP=293.988;RPPR=973.658;RPR=0;RUN=1;SAF=134;SAP=293.988;SAR=0;SRF=447;SRP=973.658;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:199:192,6:192:6651:6:209:0,-40.5626,-579.57 0/1:167:106,61:106:3732:61:2011:-130.986,0,-285.816 0/1:153:93,60:93:3167:60:2056:-139.259,0,-239.198 0/1:63:56,7:56:1973:7:238:-2.78753,0,-158.881 dDocent_Contig_847 83 . C T 44.9048 . AB=0.277778;ABP=10.7311;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=84;DPB=84;DPRA=0.818182;EPP=13.8677;EPPR=174.557;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=121;QR=2549;RO=79;RPL=5;RPP=13.8677;RPPR=174.557;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=79;SRP=174.557;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:24:24,0:24:786:0:0:0,-7.22472,-71.0437 0/0:32:32,0:32:1025:0:0:0,-9.63296,-92.5426 0/0:10:10,0:10:304:0:0:0,-3.0103,-27.6555 0/1:18:13,5:13:434:5:121:-5.71232,0,-33.9628 dDocent_Contig_848 66 . C G 52.7541 . AB=0.153846;ABP=30.0702;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=223;DPB=223;DPRA=0.395939;EPP=11.6962;EPPR=478.563;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=155;QR=8620;RO=219;RPL=4;RPP=11.6962;RPPR=478.563;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=219;SRP=478.563;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:74:74,0:74:2901:0:0:0,-22.2762,-261.201 0/0:80:80,0:80:3161:0:0:0,-24.0824,-284.575 0/0:43:43,0:43:1692:0:0:0,-12.9443,-152.509 0/1:26:22,4:22:866:4:155:-6.49725,0,-70.4215 dDocent_Contig_850 36 . A T 501.68 . AB=0.177515;ABP=155.669;AC=3;AF=0.375;AN=8;AO=35;CIGAR=1X;DP=235;DPB=235;DPRA=0;EPP=79.0118;EPPR=437.305;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1359;QR=7848;RO=200;RPL=0;RPP=79.0118;RPPR=437.305;RPR=35;RUN=1;SAF=35;SAP=79.0118;SAR=0;SRF=200;SRP=437.305;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:80:70,10:70:2755:10:381:-10.5565,0,-223.995 0/0:66:61,5:61:2360:5:204:0,-1.12395,-193.824 0/1:75:59,16:59:2329:16:613:-32.9173,0,-187.196 0/1:14:10,4:10:404:4:161:-10.6605,0,-32.5051 dDocent_Contig_851 98 . N A 1941.29 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=67;CIGAR=1X;DP=68;DPB=68;DPRA=0;EPP=148.499;EPPR=0;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=2138;QR=0;RO=0;RPL=67;RPP=148.499;RPPR=0;RPR=0;RUN=1;SAF=67;SAP=148.499;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:17:0,17:0:0:17:505:-45.7369,-5.11751,0 1/1:17:0,17:0:0:17:551:-49.8981,-5.11751,0 1/1:18:0,18:0:0:18:590:-53.4124,-5.41854,0 1/1:16:0,15:0:0:15:492:-44.4799,-4.51545,0 dDocent_Contig_852 19 . C T 1359.1 . AB=0.171111;ABP=425.801;AC=4;AF=0.5;AN=8;AO=77;CIGAR=1X;DP=450;DPB=450;DPRA=0;EPP=170.214;EPPR=812.97;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.9893;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.994638;PAO=0;PQA=0;PQR=0;PRO=0;QA=3062;QR=14776;RO=373;RPL=0;RPP=170.214;RPPR=812.97;RPR=77;RUN=1;SAF=77;SAP=170.214;SAR=0;SRF=373;SRP=812.97;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:117:102,15:102:4081:15:596:-18.7576,0,-332.039 0/1:119:108,11:108:4224:11:446:-4.67341,0,-344.313 0/1:130:105,25:105:4155:25:985:-49.814,0,-334.786 0/1:84:58,26:58:2316:26:1035:-68.154,0,-183.313 dDocent_Contig_853 85 . T C 1942.01 . AB=0.728155;ABP=49.581;AC=4;AF=0.5;AN=8;AO=75;CIGAR=1X;DP=103;DPB=103;DPRA=0;EPP=165.871;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2549;QR=1006;RO=28;RPL=75;RPP=165.871;RPPR=63.8115;RPR=0;RUN=1;SAF=75;SAP=165.871;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:10,20:10:361:20:682:-52.6681,0,-23.8038 0/1:38:8,30:8:283:30:1010:-79.7689,0,-14.3729 0/1:17:3,14:3:110:14:478:-38.2292,0,-5.14349 0/1:18:7,11:7:252:11:379:-29.0238,0,-17.6101 dDocent_Contig_854 9 . T C 16690 . AB=0.730964;ABP=368.126;AC=6;AF=0.75;AN=8;AO=576;CIGAR=1X6M;DP=788;DPB=788;DPRA=0;EPP=1253.78;EPPR=191.928;GTI=0;LEN=1;MEANALT=5.5;MQM=48.4149;MQMR=50.4368;NS=4;NUMALT=4;ODDS=0;PAIRED=0.967014;PAIREDR=0.758621;PAO=0;PQA=0;PQR=0;PRO=0;QA=20702;QR=3395;RO=87;RPL=0;RPP=1253.78;RPPR=191.928;RPR=576;RUN=1;SAF=576;SAP=1253.78;SAR=0;SRF=87;SRP=191.928;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:251:33,0,4,10,202:33:1284:0,4,10,202:0,160,120,7272:-568.319,-578.253,-677.732,-567.059,-666.538,-665.334,-573.059,-672.537,-661.343,-669.526,0,-99.6099,-88.4121,-94.4584,-38.8018 0|1:275:39,25,17,0,175:39:1520:25,17,0,175:981,656,0,6402:-499.168,-430.226,-531.414,-476.532,-504.563,-580.126,-510.908,-538.939,-585.244,-619.621,0,-28.0249,-74.3548,-108.723,-56.0426 1|1:164:13,22,2,3,124:13:512:22,2,3,124:810,79,36,4194:-354.137,-292.363,-322.615,-354.562,-325.75,-390.835,-356.493,-327.681,-389.88,-392.464,-28.8404,0,-62.2375,-64.179,-28.3934 1|1:98:2,10,3,6,75:2:79:10,3,6,75:393,119,72,2834:-252.864,-221.136,-224.628,-251.949,-226.121,-257.547,-250.36,-224.533,-255.345,-255.056,-25.9043,0,-30.9183,-29.3577,-9.8396 dDocent_Contig_855 121 . C A 209.844 . AB=0.189873;ABP=69.0066;AC=3;AF=0.375;AN=8;AO=15;CIGAR=1X;DP=114;DPB=114;DPRA=0.752381;EPP=35.5824;EPPR=217.986;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=520;QR=3326;RO=99;RPL=0;RPP=35.5824;RPPR=217.986;RPR=15;RUN=1;SAF=0;SAP=35.5824;SAR=15;SRF=0;SRP=217.986;SRR=99;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:16,4:16:549:4:137:-6.64761,0,-43.714 0/1:20:18,2:18:610:2:70:-0.626796,0,-49.1982 0/0:35:35,0:35:1166:0:0:0,-10.536,-105.238 0/1:39:30,9:30:1001:9:313:-16.7669,0,-78.6521 dDocent_Contig_856 19 . T A 5910.11 . AB=0.421176;ABP=25.9462;AC=4;AF=0.5;AN=8;AO=179;CIGAR=1X3M1X1M2X;DP=425;DPB=425;DPRA=0;EPP=391.704;EPPR=287.473;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7107;QR=5128;RO=131;RPL=0;RPP=391.704;RPPR=287.473;RPR=179;RUN=1;SAF=179;SAP=391.704;SAR=0;SRF=131;SRP=287.473;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:184:66,76,41:66:2589:76,41:3018,1634:-228.592,0,-190.038,-113.906,-78.36,-314.479 1|0:102:24,47,31:24:938:47,31:1865,1211:-168.741,-22.4362,-85.4022,-76.4172,0,-144.198 1|0:92:23,37,31:23:897:37,31:1469,1240:-142.429,-28.4188,-91.0095,-47.2104,0,-111.608 0|1:47:18,19,10:18:704:19,10:755,400:-56.7397,0,-52.1542,-29.2079,-24.9211,-84.074 dDocent_Contig_857 9 . C T 379.434 . AB=0.178862;ABP=113.19;AC=1;AF=0.125;AN=8;AO=22;CIGAR=1X;DP=728;DPB=728;DPRA=0.609917;EPP=50.7827;EPPR=1533.9;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=843;QR=27117;RO=705;RPL=0;RPP=50.7827;RPPR=1533.9;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=705;SRP=1533.9;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:232:232,0:232:8940:0:0:0,-69.839,-804.317 0/0:250:249,0:249:9608:0:0:0,-74.9565,-863.991 0/0:123:123,0:123:4704:0:0:0,-37.0267,-423.393 0/1:123:101,22:101:3865:22:843:-39.1653,0,-310.919 dDocent_Contig_859 26 . A T 149.186 . AB=0.13;ABP=121.92;AC=1;AF=0.125;AN=8;AO=24;CIGAR=1X1M1X;DP=374;DPB=374;DPRA=0.992908;EPP=55.1256;EPPR=763.026;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=952;QR=13953;RO=350;RPL=0;RPP=55.1256;RPPR=763.026;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=350;SRP=763.026;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:94:94,0:94:3761:0:0:0,-28.2968,-338.504 0|1:100:87,13:87:3482:13:510:-16.1405,0,-283.324 0|0:91:86,5:86:3393:5:204:0,-8.6497,-286.693 0|0:89:83,6:83:3317:6:238:0,-4.99802,-276.801 dDocent_Contig_860 14 . T G 3300.48 . AB=0.545;ABP=6.52809;AC=4;AF=0.5;AN=8;AO=109;CIGAR=1X;DP=200;DPB=200;DPRA=0;EPP=239.701;EPPR=200.614;GTI=0;LEN=1;MEANALT=1;MQM=59.8716;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4385;QR=3677;RO=91;RPL=0;RPP=239.701;RPPR=200.614;RPR=109;RUN=1;SAF=109;SAP=239.701;SAR=0;SRF=91;SRP=200.614;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:73:25,48:25:1015:48:1944:-153.158,0,-69.6669 0/1:73:40,33:40:1613:33:1329:-97.8765,0,-123.425 0/1:27:6,21:6:246:21:836:-67.4255,0,-14.3923 0/1:27:20,7:20:803:7:276:-17.0772,0,-64.455 dDocent_Contig_861 14 . G A 258.006 . AB=0.222222;ABP=39.2015;AC=2;AF=0.25;AN=8;AO=14;CIGAR=1X;DP=125;DPB=125;DPRA=0.553191;EPP=33.4109;EPPR=244.044;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=560;QR=4395;RO=111;RPL=0;RPP=33.4109;RPPR=244.044;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=111;SRP=244.044;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:38:34,4:34:1347:4:163:-3.61929,0,-110.047 0/0:47:47,0:47:1850:0:0:0,-14.1484,-166.708 0/0:24:22,2:22:879:2:74:0,-0.198953,-72.395 0/1:16:8,8:8:319:8:323:-24.6221,0,-24.2606 dDocent_Contig_862 108 . G T 239.215 . AB=0.382353;ABP=7.09778;AC=3;AF=0.375;AN=8;AO=13;CIGAR=1X;DP=49;DPB=49;DPRA=0.755556;EPP=31.2394;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=413;QR=1009;RO=36;RPL=0;RPP=31.2394;RPPR=81.1833;RPR=13;RUN=1;SAF=0;SAP=31.2394;SAR=13;SRF=0;SRP=81.1833;SRR=36;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:15:15,0:15:466:0:0:0,-4.51545,-42.2393 0/1:13:6,7:6:113:7:218:-16.0124,0,-6.44402 0/1:11:9,2:9:260:2:59:-2.29226,0,-20.3728 0/1:10:6,4:6:170:4:136:-9.56539,0,-12.5695 dDocent_Contig_863 14 . T C 1286.44 . AB=0.255924;ABP=112.191;AC=2;AF=0.25;AN=8;AO=54;CIGAR=1X;DP=285;DPB=285;DPRA=2.85135;EPP=120.27;EPPR=502.449;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2154;QR=7770;RO=230;RPL=0;RPP=120.27;RPPR=502.449;RPR=54;RUN=1;SAF=54;SAP=120.27;SAR=0;SRF=230;SRP=502.449;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:29:29,0:29:995:0:0:0,-8.72987,-89.8568 0/1:150:105,45:105:3539:45:1787:-115.885,0,-273.564 0/0:45:45,0:45:1533:0:0:0,-13.5463,-138.249 0/1:61:51,9:51:1703:9:367:-15.2027,0,-135.38 dDocent_Contig_864 19 . G A 25397.1 . AB=0.774099;ABP=673.204;AC=4;AF=0.5;AN=8;AO=795;CIGAR=1X;DP=1027;DPB=1027;DPRA=0;EPP=1729.33;EPPR=504.62;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=31735;QR=9221;RO=231;RPL=0;RPP=1729.33;RPPR=504.62;RPR=795;RUN=1;SAF=795;SAP=1729.33;SAR=0;SRF=231;SRP=504.62;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:345:85,260:85:3394:260:10430:-834.139,0,-201.651 0/1:326:76,249:76:3041:249:9928:-794.666,0,-175.543 0/1:195:48,147:48:1909:147:5883:-470.556,0,-113.315 0/1:161:22,139:22:877:139:5494:-445.839,0,-30.7743 dDocent_Contig_865 109 . C T 1768.92 . AB=0.181435;ABP=629.741;AC=4;AF=0.5;AN=8;AO=129;CIGAR=1X;DP=711;DPB=711;DPRA=0;EPP=283.13;EPPR=1266.81;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4391;QR=19833;RO=582;RPL=0;RPP=283.13;RPPR=1266.81;RPR=129;RUN=1;SAF=0;SAP=283.13;SAR=129;SRF=0;SRP=1266.81;SRR=582;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:223:182,41:182:6177:41:1408:-59.8882,0,-488.944 0/1:197:155,42:155:5252:42:1404:-67.3472,0,-413.545 0/1:193:163,30:163:5585:30:1029:-34.821,0,-444.712 0/1:98:82,16:82:2819:16:550:-20.3252,0,-224.46 dDocent_Contig_866 173 . T A 240.594 . AB=0.263158;ABP=21.525;AC=1;AF=0.125;AN=8;AO=11;CIGAR=1X;DP=111;DPB=111;DPRA=0.982143;EPP=26.8965;EPPR=220.158;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=445;QR=3965;RO=100;RPL=11;RPP=26.8965;RPPR=220.158;RPR=0;RUN=1;SAF=0;SAP=26.8965;SAR=11;SRF=0;SRP=220.158;SRR=100;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:27:27,0:27:1077:0:0:0,-8.12781,-97.2153 0/1:38:28,10:28:1128:10:404:-25.2809,0,-90.3625 0/0:29:29,0:29:1130:0:0:0,-8.72987,-101.974 0/0:17:16,1:16:630:1:41:0,-1.02294,-52.9361 dDocent_Contig_867 15 . A G 9482 . AB=0.418868;ABP=48.4637;AC=4;AF=0.5;AN=8;AO=333;CIGAR=1X;DP=795;DPB=795;DPRA=0;EPP=726.111;EPPR=1006.23;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=13253;QR=17771;RO=462;RPL=0;RPP=726.111;RPPR=1006.23;RPR=333;RUN=1;SAF=333;SAP=726.111;SAR=0;SRF=462;SRP=1006.23;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:309:168,141:168:6438:141:5616:-412.248,0,-486.246 0/1:243:136,107:136:5290:107:4239:-308.328,0,-402.869 0/1:139:98,41:98:3760:41:1645:-106.433,0,-296.636 0/1:104:60,44:60:2283:44:1753:-126.681,0,-174.365 dDocent_Contig_868 10 . A T 217.235 . AB=0.0869565;ABP=37.093;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X1M1X2M1X;DP=199;DPB=199;DPRA=0.237113;EPP=7.35324;EPPR=387.361;GTI=0;LEN=1;MEANALT=1;MQM=55;MQMR=60;NS=4;NUMALT=2;ODDS=1.38778e-17;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=6969;RO=177;RPL=0;RPP=7.35324;RPPR=387.361;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=177;SRP=387.361;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:97:92,0,2:92:3627:0,2:0,74:0,-27.6948,-326.099,-21.6571,-320.047,-319.445 0|0:49:42,0,5:42:1632:0,5:0,201:-3.91903,-16.5623,-150.645,0,-134.08,-132.575 0|0:30:22,0,8:22:875:0,8:0,321:-20.2261,-26.8488,-98.8906,0,-72.4417,-70.0334 0|1:23:21,2,0:21:835:2,0:82,0:-0.8341,0,-68.5445,-7.15573,-69.1466,-75.895 dDocent_Contig_869 60 . G C 8111.87 . AB=0.301455;ABP=332.397;AC=4;AF=0.5;AN=8;AO=290;CIGAR=3M1X;DP=962;DPB=962;DPRA=0;EPP=632.737;EPPR=782.569;GTI=0;LEN=1;MEANALT=3.75;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=11089;QR=12955;RO=359;RPL=290;RPP=632.737;RPPR=782.569;RPR=0;RUN=1;SAF=290;SAP=632.737;SAR=0;SRF=359;SRP=782.569;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:317:117,103,0,96:117:4175:103,0,96:3847,0,3658:-279.737,0,-309.272,-314.957,-340.278,-655.24,-14.9522,-40.2656,-355.234,-326.335 0|1:260:91,55,14,99:91:3276:55,14,99:2014,541,3784:-283.052,-145.88,-396.579,-266.01,-368.701,-529.056,0,-102.69,-222.825,-237.46 0|1:211:86,40,35,49:86:3125:40,35,49:1496,1329,1896:-129.848,-33.2342,-276.359,-46.7582,-179.421,-291.39,0,-132.664,-146.189,-240.419 0|1:174:65,31,31,46:65:2379:31,31,46:1100,1140,1751:-124.04,-54.0066,-239.065,-50.4107,-155.201,-235.472,0,-104.793,-101.199,-180.55 dDocent_Contig_870 118 . A C 6894.41 . AB=0.472414;ABP=6.84407;AC=4;AF=0.5;AN=8;AO=274;CIGAR=1X;DP=580;DPB=580;DPRA=0;EPP=597.994;EPPR=667.481;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=9650;QR=10789;RO=306;RPL=0;RPP=597.994;RPPR=667.481;RPR=274;RUN=1;SAF=0;SAP=597.994;SAR=274;SRF=0;SRP=667.481;SRR=306;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:184:99,85:99:3505:85:2969:-212.053,0,-260.264 0/1:207:91,116:91:3221:116:4098:-306.697,0,-227.792 0/1:121:72,49:72:2536:49:1721:-118.748,0,-192.061 0/1:68:44,24:44:1527:24:862:-57.4323,0,-117.242 dDocent_Contig_872 15 . A G 183.519 . AB=0.116279;ABP=277.979;AC=2;AF=0.25;AN=8;AO=33;CIGAR=1X;DP=602;DPB=602;DPRA=0;EPP=74.6689;EPPR=1238.58;GTI=0;LEN=1;MEANALT=1;MQM=43.7576;MQMR=59.891;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.970123;PAO=0;PQA=0;PQR=0;PRO=0;QA=1294;QR=22621;RO=569;RPL=0;RPP=74.6689;RPPR=1238.58;RPR=33;RUN=1;SAF=33;SAP=74.6689;SAR=0;SRF=569;SRP=1238.58;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:173:172,1:172:6842:1:37:0,-48.732,-612.127 0/0:214:207,7:207:8220:7:281:0,-39.727,-712.71 0/1:153:137,16:137:5442:16:628:-8.89267,0,-443.551 0/1:62:53,9:53:2117:9:348:-11.9029,0,-172.047 dDocent_Contig_873 13 . A T 3809.12 . AB=0.262895;ABP=296.484;AC=4;AF=0.5;AN=8;AO=158;CIGAR=1X;DP=601;DPB=601;DPRA=0;EPP=346.103;EPPR=964.973;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6293;QR=17469;RO=443;RPL=0;RPP=346.103;RPPR=964.973;RPR=158;RUN=1;SAF=158;SAP=346.103;SAR=0;SRF=443;SRP=964.973;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:220:188,32:188:7427:32:1276:-48.8773,0,-601.874 0/1:176:147,29:147:5747:29:1152:-50.9808,0,-464.092 0/1:129:63,66:63:2512:66:2635:-198.448,0,-187.397 0/1:76:45,31:45:1783:31:1230:-88.0959,0,-137.805 dDocent_Contig_875 14 . C T 10172 . AB=0.758621;ABP=53.5532;AC=6;AF=0.75;AN=8;AO=303;CIGAR=1X;DP=335;DPB=335;DPRA=0;EPP=660.966;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=12069;QR=1284;RO=32;RPL=0;RPP=660.966;RPPR=72.4974;RPR=303;RUN=1;SAF=303;SAP=660.966;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:162:7,155:7:286:155:6143:-526.529,-22.652,0 1/1:86:4,82:4:158:82:3269:-279.658,-11.2883,0 0/1:55:12,43:12:480:43:1724:-138.817,0,-26.9933 0/1:32:9,23:9:360:23:933:-74.6397,0,-23.1297 dDocent_Contig_876 38 . A G 92.9428 . AB=0.123288;ABP=92.9925;AC=1;AF=0.125;AN=8;AO=12;CIGAR=1X;DP=548;DPB=548;DPRA=0.747535;EPP=29.068;EPPR=1166.92;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.996269;PAO=0;PQA=0;PQR=0;PRO=0;QA=466;QR=21352;RO=536;RPL=0;RPP=29.068;RPPR=1166.92;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=536;SRP=1166.92;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:191:189,2:189:7578:2:78:0,-50.094,-674.221 0/0:169:169,0:169:6769:0:0:0,-50.8741,-608.897 0/0:115:114,1:114:4493:1:31:0,-31.519,-401.242 0/1:73:64,9:64:2512:9:357:-10.5161,0,-204.261 dDocent_Contig_877 12 . A C 93.7954 . AB=0.0989011;ABP=257.335;AC=2;AF=0.25;AN=8;AO=21;CIGAR=1X;DP=333;DPB=333;DPRA=0.886447;EPP=48.6112;EPPR=629.397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=56.2981;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=0.894231;PAO=0;PQA=0;PQR=0;PRO=0;QA=845;QR=12464;RO=312;RPL=0;RPP=48.6112;RPPR=680.51;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=306;SRP=629.397;SRR=6;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:112:100,12:100:3989:12:485:-10.2835,0,-306.266 0/0:91:91,0:91:3679:0:0:0,-27.3937,-301.66 0/1:70:64,6:64:2533:6:238:-0.721547,0,-200.111 0/0:60:57,3:57:2263:3:122:0,-6.68931,-192.464 dDocent_Contig_878 7 . T A 61.8681 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X12I1M1X3M1X;DP=2;DPB=6.28571;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=34;MQMR=0;NS=1;NUMALT=1;ODDS=4.89285;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=76;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:2:0,2:0:0:2:76:-6.18357,-0.60206,0 .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. dDocent_Contig_879 17 . T G 90.6003 . AB=0.113402;ABP=128.933;AC=2;AF=0.25;AN=8;AO=14;CIGAR=1X;DP=192;DPB=192;DPRA=0;EPP=33.4109;EPPR=387.361;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.99435;PAO=0;PQA=0;PQR=0;PRO=0;QA=563;QR=6293;RO=177;RPL=0;RPP=33.4109;RPPR=387.361;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=177;SRP=387.361;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:66:65,1:65:2327:1:41:0,-15.7734,-205.56 0/1:55:48,7:48:1672:7:284:-9.37734,0,-134.188 0/0:29:27,2:27:947:2:80:0,-1.13829,-77.9332 0/1:42:37,4:37:1347:4:158:-2.09821,0,-109.063 dDocent_Contig_880 1 . N G 110.966 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.586;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=119;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:119:-11.095,-0.90309,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_881 24 . C A 327.953 . AB=0.217391;ABP=50.8771;AC=1;AF=0.125;AN=8;AO=24;CIGAR=1X;DP=253;DPB=253;DPRA=3.33333;EPP=55.1256;EPPR=491.63;GTI=0;LEN=1;MEANALT=1;MQM=59.25;MQMR=49.31;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.257642;PAO=0;PQA=0;PQR=0;PRO=0;QA=962;QR=9251;RO=229;RPL=0;RPP=55.1256;RPPR=500.277;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=228;SRP=491.63;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:23:23,0:23:927:0:0:0,-6.92369,-81.3878 0/1:69:54,15:54:2184:15:605:-34.0172,0,-170.247 0/0:109:101,8:101:4081:8:316:0,-4.04546,-328.583 0/0:52:51,1:51:2059:1:41:0,-11.559,-176.239 dDocent_Contig_882 54 . A G 51.2543 . AB=0.176471;ABP=18.4661;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=175;DPB=175;DPRA=0.322785;EPP=9.52472;EPPR=376.504;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=123;QR=6840;RO=172;RPL=3;RPP=9.52472;RPPR=376.504;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=172;SRP=376.504;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:81:81,0:81:3186:0:0:0,-24.3834,-286.822 0/0:56:56,0:56:2253:0:0:0,-16.8577,-202.929 0/0:21:21,0:21:844:0:0:0,-6.32163,-76.2692 0/1:17:14,3:14:557:3:123:-6.34728,0,-45.3534 dDocent_Contig_883 110 . G C 2428.84 . AB=0.496503;ABP=3.02549;AC=5;AF=0.625;AN=8;AO=95;CIGAR=2X;DP=168;DPB=168;DPRA=0;EPP=209.3;EPPR=161.528;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3246;QR=2503;RO=73;RPL=0;RPP=209.3;RPPR=161.528;RPR=95;RUN=1;SAF=0;SAP=209.3;SAR=95;SRF=0;SRP=161.528;SRR=73;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:65:46,19:46:1565:19:632:-37.6251,0,-121.574 0|1:36:10,26:10:346:26:877:-68.4018,0,-20.6373 0|1:42:16,26:16:557:26:905:-69.1236,0,-37.8158 1|1:25:1,24:1:35:24:832:-71.7,-4.02712,0 dDocent_Contig_885 69 . C T 14816.7 . AB=0.846575;ABP=383.815;AC=5;AF=0.625;AN=8;AO=453;CIGAR=1X;DP=517;DPB=517;DPRA=0;EPP=986.687;EPPR=141.985;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.984375;PAO=0;PQA=0;PQR=0;PRO=0;QA=18045;QR=2514;RO=64;RPL=453;RPP=986.687;RPPR=141.985;RPR=0;RUN=1;SAF=453;SAP=986.687;SAR=0;SRF=64;SRP=141.985;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:180:31,149:31:1228:149:5960:-481.999,0,-56.6026 1/1:152:8,144:8:310:144:5710:-485.437,-17.4997,0 0/1:114:15,99:15:582:99:3934:-319.741,0,-18.3919 0/1:71:10,61:10:394:61:2441:-198.46,0,-14.4428 dDocent_Contig_886 12 . A T 89.2863 . AB=0.25;ABP=11.6962;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=115;DPB=115;DPRA=0.484848;EPP=11.6962;EPPR=244.044;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=162;QR=4392;RO=111;RPL=0;RPP=11.6962;RPPR=244.044;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=111;SRP=244.044;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:27:27,0:27:1088:0:0:0,-8.12781,-98.2042 0/0:36:36,0:36:1441:0:0:0,-10.8371,-129.94 0/0:36:36,0:36:1431:0:0:0,-10.8371,-129.046 0/1:16:12,4:12:432:4:162:-10.1505,0,-34.3854 dDocent_Contig_887 8 . T C 5288.43 . AB=0.302521;ABP=244.865;AC=4;AF=0.5;AN=8;AO=216;CIGAR=1X;DP=714;DPB=714;DPRA=0;EPP=472.048;EPPR=1084.4;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=2.77556e-17;PAIRED=1;PAIREDR=0.987952;PAO=0;PQA=0;PQR=0;PRO=0;QA=8315;QR=19157;RO=498;RPL=0;RPP=472.048;RPPR=1084.4;RPR=216;RUN=1;SAF=216;SAP=472.048;SAR=0;SRF=498;SRP=1084.4;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:251:159,92:159:6141:92:3558:-244.777,0,-477.057 0/1:176:154,22:154:5931:22:849:-23.7512,0,-480.753 0/1:175:122,53:122:4672:53:2031:-130.342,0,-367.838 0/1:112:63,49:63:2413:49:1877:-135.461,0,-183.663 dDocent_Contig_888 48 . G A 1428.15 . AB=0.339623;ABP=38.5323;AC=3;AF=0.375;AN=8;AO=56;CIGAR=1X;DP=186;DPB=186;DPRA=0;EPP=124.613;EPPR=285.302;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2233;QR=5130;RO=130;RPL=0;RPP=124.613;RPPR=285.302;RPR=56;RUN=1;SAF=56;SAP=124.613;SAR=0;SRF=130;SRP=285.302;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:90:64,26:64:2516:26:1051:-67.7854,0,-199.494 0/0:27:25,2:25:1004:2:81:0,-0.442076,-82.9702 0/1:53:31,22:31:1204:22:857:-61.4729,0,-92.6812 0/1:16:10,6:10:406:6:244:-17.5221,0,-32.0839 dDocent_Contig_889 81 . G C 231.407 . AB=0.259259;ABP=30.1939;AC=2;AF=0.25;AN=8;AO=15;CIGAR=1X;DP=112;DPB=112;DPRA=3.81481;EPP=35.5824;EPPR=213.643;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.3608;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.979381;PAO=0;PQA=0;PQR=0;PRO=0;QA=493;QR=3222;RO=97;RPL=15;RPP=35.5824;RPPR=213.643;RPR=0;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=97;SRP=213.643;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:49:48,1:48:1613:1:35:0,-11.2518,-141.955 0/1:41:30,11:30:982:11:368:-21.1003,0,-76.3371 0/1:13:10,3:10:350:3:90:-4.48401,0,-27.9241 0/0:9:9,0:9:277:0:0:0,-2.70927,-24.6647 dDocent_Contig_890 22 . G C 456.838 . AB=0.222222;ABP=69.3608;AC=2;AF=0.25;AN=8;AO=22;CIGAR=1X;DP=266;DPB=266;DPRA=0.592814;EPP=50.7827;EPPR=532.85;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=858;QR=9412;RO=244;RPL=0;RPP=50.7827;RPPR=532.85;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=244;SRP=532.85;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:108:108,0:108:4130:0:0:0,-32.5112,-371.76 0/0:59:59,0:59:2303:0:0:0,-17.7608,-207.469 0/1:51:37,14:37:1446:14:540:-33.5899,0,-115.057 0/1:48:40,8:40:1533:8:318:-14.5376,0,-123.784 dDocent_Contig_891 26 . G C 12186.9 . AB=0.533093;ABP=10.9149;AC=4;AF=0.5;AN=8;AO=443;CIGAR=1M1D1M1X;DP=831;DPB=720;DPRA=0;EPP=964.973;EPPR=839.027;GTI=0;LEN=1;MEANALT=1.75;MQM=42.1738;MQMR=59.9506;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.94026;PAO=0;PQA=0;PQR=0;PRO=0;QA=17607;QR=15194;RO=385;RPL=0;RPP=964.973;RPPR=839.027;RPR=443;RUN=1;SAF=443;SAP=964.973;SAR=0;SRF=385;SRP=839.027;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:240:79,160:79:3124:160:6379:-474.051,0,-209.122 0|1:229:110,118:110:4350:118:4721:-325.177,0,-322.272 0|1:248:135,112:135:5337:112:4394:-289.621,0,-405.468 0|1:114:61,53:61:2383:53:2113:-135.334,0,-180.323 dDocent_Contig_892 7 . A T 1148.25 . AB=0.451977;ABP=6.55581;AC=4;AF=0.5;AN=8;AO=80;CIGAR=1X;DP=177;DPB=177;DPRA=0;EPP=176.728;EPPR=213.643;GTI=0;LEN=1;MEANALT=1;MQM=24.1875;MQMR=51.1753;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.360825;PAO=0;PQA=0;PQR=0;PRO=0;QA=3060;QR=3683;RO=97;RPL=0;RPP=176.728;RPPR=213.643;RPR=80;RUN=1;SAF=80;SAP=176.728;SAR=0;SRF=97;SRP=213.643;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:53:36,17:36:1365:17:654:-19.85,0,-104.114 0/1:46:33,13:33:1272:13:482:-13.9006,0,-85.9946 0/1:52:17,35:17:628:35:1348:-62.7052,0,-38.0746 0/1:26:11,15:11:418:15:576:-23.8589,0,-23.8613 dDocent_Contig_893 7 . A T 824.514 . AB=0.338053;ABP=131.719;AC=4;AF=0.5;AN=8;AO=191;CIGAR=2X;DP=565;DPB=565;DPRA=0;EPP=417.762;EPPR=700.08;GTI=0;LEN=1;MEANALT=2.75;MQM=14.2147;MQMR=55.1815;NS=4;NUMALT=2;ODDS=5.55112e-17;PAIRED=0;PAIREDR=0.0861538;PAO=0;PQA=0;PQR=0;PRO=0;QA=7274;QR=12435;RO=325;RPL=0;RPP=417.762;RPPR=708.739;RPR=191;RUN=1;SAF=191;SAP=417.762;SAR=0;SRF=324;SRP=700.08;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:213:122,75,16:122:4685:75,16:2875,597:-34.9044,0,-352.038,-32.0039,-335.026,-401.889 0|1:171:103,54,11:103:3937:54,11:2020,426:-24.5594,0,-305.219,-29.8824,-295.821,-348.12 0|1:114:64,37,12:64:2452:37,12:1425,451:-16.4736,0,-181.501,-5.22051,-162.169,-194.339 0|1:67:36,25,6:36:1361:25,6:954,228:-12.0035,0,-101.094,-10.3317,-96.1507,-117.194 dDocent_Contig_894 7 . A T 785.298 . AB=0.308108;ABP=62.18;AC=4;AF=0.5;AN=8;AO=57;CIGAR=1X;DP=185;DPB=185;DPRA=0;EPP=126.784;EPPR=278.787;GTI=0;LEN=1;MEANALT=1.25;MQM=27.4035;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.913386;PAO=0;PQA=0;PQR=0;PRO=0;QA=2170;QR=4878;RO=127;RPL=0;RPP=126.784;RPPR=278.787;RPR=57;RUN=1;SAF=57;SAP=126.784;SAR=0;SRF=127;SRP=278.787;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:61:45,16:45:1732:16:603:-21.1099,0,-137.774 0/1:57:41,15:41:1566:15:565:-19.6507,0,-124.176 0/1:41:23,18:23:889:18:696:-31.6952,0,-67.9877 0/1:26:18,8:18:691:8:306:-11.5635,0,-54.6966 dDocent_Contig_895 21 . G T 380.371 . AB=0.111111;ABP=26.6552;AC=0;AF=0;AN=8;AO=2;CIGAR=1X3M2X;DP=56;DPB=56;DPRA=1.8;EPP=7.35324;EPPR=81.1833;GTI=0;LEN=1;MEANALT=2;MQM=36;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=75;QR=1396;RO=36;RPL=0;RPP=7.35324;RPPR=81.1833;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:18:11,6,0:11:427:6,0:203,0:-11.4716,0,-33.2844,-14.7829,-35.0906,-49.9043 0|0:18:5,11,2:5:186:11,2:407,75:-29.009,0,-11.9312,-25.0667,-9.80437,-39.6912 0|0:6:6,0,0:6:235:0,0:0,0:0,-1.80618,-21.5205,-1.80618,-21.5205,-21.5205 0|0:14:14,0,0:14:548:0,0:0,0:0,-4.21442,-49.6605,-4.21442,-49.6605,-49.6605 dDocent_Contig_896 7 . C T 12949.4 . AB=0.829412;ABP=483.698;AC=4;AF=0.5;AN=8;AO=423;CIGAR=1X;DP=510;DPB=510;DPRA=0;EPP=921.543;EPPR=191.928;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=16151;QR=3353;RO=87;RPL=0;RPP=921.543;RPPR=191.928;RPR=423;RUN=1;SAF=423;SAP=921.543;SAR=0;SRF=87;SRP=191.928;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:170:34,136:34:1315:136:5196:-416.474,0,-67.4628 0/1:137:30,107:30:1154:107:4120:-329.635,0,-62.9194 0/1:137:15,122:15:580:122:4634:-375.873,0,-11.3018 0/1:66:8,58:8:304:58:2201:-178.444,0,-7.85071 dDocent_Contig_897 19 . A T 142.844 . AB=0.102564;ABP=163.532;AC=2;AF=0.25;AN=8;AO=12;CIGAR=1X2M1X;DP=304;DPB=304;DPRA=0.517699;EPP=29.068;EPPR=587.136;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=473;QR=10555;RO=269;RPL=0;RPP=29.068;RPPR=587.136;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=269;SRP=587.136;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:113:107,0,0,6:107:4148:0,0,6:0,0,244:0,-32.2102,-372.938,-32.2102,-372.938,-372.938,-11.6776,-352.811,-352.811,-351.004 0|0:74:62,0,0,9:62:2485:0,0,9:0,0,341:-9.31247,-27.9763,-232.734,-27.9763,-232.734,-232.734,0,-204.787,-204.787,-202.078 0|1:73:63,8,0,2:63:2466:8,0,2:314,0,77:-6.8644,0,-200.349,-25.8293,-202.757,-228.581,-19.5093,-196.436,-222.259,-221.657 0|1:44:37,4,3,0:37:1456:4,3,0:159,81,0:-2.04244,0,-118.706,-7.67259,-114.347,-126.535,-13.1805,-119.91,-127.438,-133.002 dDocent_Contig_898 11 . G A 612.298 . AB=0.294118;ABP=34.305;AC=2;AF=0.25;AN=8;AO=27;CIGAR=1X;DP=186;DPB=186;DPRA=0.650794;EPP=61.6401;EPPR=339.643;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.851852;PAIREDR=0.779874;PAO=0;PQA=0;PQR=0;PRO=0;QA=1057;QR=6402;RO=159;RPL=0;RPP=61.6401;RPPR=348.274;RPR=27;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=158;SRP=339.643;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:63:63,0:63:2536:0:0:0,-18.9649,-228.366 0/1:69:46,23:46:1869:23:903:-60.7994,0,-147.635 0/0:38:36,2:36:1435:2:73:0,-4.50844,-122.462 0/1:16:14,2:14:562:2:81:-2.86925,0,-46.1069 dDocent_Contig_899 155 . T C 5288.11 . AB=0.248337;ABP=251.112;AC=2;AF=0.25;AN=8;AO=112;CIGAR=1X3M1X;DP=451;DPB=451;DPRA=0;EPP=246.215;EPPR=317.874;GTI=0;LEN=1;MEANALT=3.25;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4146;QR=5288;RO=145;RPL=0;RPP=246.215;RPPR=317.874;RPR=112;RUN=1;SAF=0;SAP=246.215;SAR=112;SRF=0;SRP=317.874;SRR=145;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:125:39,39,45:39:1431:39,45:1467,1595:-121.411,-12.9499,-118.189,-3.22677,0,-106.651 1|0:176:48,58,69:48:1740:58,69:2112,2426:-213.424,-55.3929,-179.992,-30.4228,0,-151.706 0|0:95:35,12,47:35:1304:12,47:450,1669:-125.43,-99.1059,-202.248,0,-69.8876,-92.5954 0|0:55:23,3,28:23:813:3,28:117,994:-74.0358,-71.3388,-136.639,0,-56.5563,-57.7489 dDocent_Contig_900 21 . C G 4641.42 . AB=0.791209;ABP=137.069;AC=4;AF=0.5;AN=8;AO=144;CIGAR=1X;DP=182;DPB=182;DPRA=0;EPP=307.077;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.784722;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5816;QR=1510;RO=38;RPL=0;RPP=315.702;RPPR=85.5263;RPR=144;RUN=1;SAF=143;SAP=307.077;SAR=1;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:45:7,38:7:279:38:1539:-125.197,0,-11.9337 0/1:51:6,45:6:245:45:1813:-148.026,0,-7.07694 0/1:37:13,24:13:513:24:972:-76.639,0,-35.3778 0/1:49:12,37:12:473:37:1492:-119.769,0,-28.1651 dDocent_Contig_901 19 . G T 319.346 . AB=0.206186;ABP=75.7434;AC=2;AF=0.25;AN=8;AO=31;CIGAR=1X;DP=354;DPB=354;DPRA=0;EPP=11.486;EPPR=704.396;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.0967742;PAIREDR=0.990712;PAO=0;PQA=0;PQR=0;PRO=0;QA=1102;QR=12694;RO=323;RPL=0;RPP=70.3259;RPPR=704.396;RPR=31;RUN=1;SAF=21;SAP=11.486;SAR=10;SRF=323;SRP=704.396;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:118:116,2:116:4509:2:76:0,-28.3069,-398.542 0/0:139:130,9:130:5154:9:327:0,-12.0669,-433.953 0/1:68:56,12:56:2184:12:407:-16.4792,0,-176.257 0/1:29:21,8:21:847:8:292:-17.8991,0,-67.8098 dDocent_Contig_902 29 . T G 4314.71 . AB=0.0334572;ABP=511.579;AC=0;AF=0;AN=8;AO=9;CIGAR=1X3M1X;DP=269;DPB=269;DPRA=0;EPP=22.5536;EPPR=157.185;GTI=0;LEN=1;MEANALT=3.25;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=347;QR=2804;RO=71;RPL=0;RPP=22.5536;RPPR=157.185;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=71;SRP=157.185;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:74:25,5,11,32:25:987:5,11,32:191,430,1266:-96.6667,-88.5222,-168.23,-69.8977,-135.439,-147.798,0,-65.5489,-46.9246,-71.5861 0|0:101:19,1,13,68:19:751:1,13,68:40,520,2694:-216.015,-218.439,-279.942,-182.51,-241.017,-240.399,0,-58.5209,-22.5979,-41.3464 0|0:60:18,2,14,26:18:719:2,14,26:76,556,1047:-80.886,-80.0724,-138.694,-42.5939,-95.5832,-97.6007,0,-52.9995,-15.5212,-51.405 0|0:34:9,1,14,10:9:347:1,14,10:40,547,388:-43.3925,-42.8058,-70.9996,-3.3813,-28.5771,-27.6584,-14.2241,-39.4252,0,-39.7109 dDocent_Contig_903 153 . G A 310.422 . AB=0.178808;ABP=138.317;AC=1;AF=0.125;AN=8;AO=27;CIGAR=1X;DP=493;DPB=493;DPRA=1.32456;EPP=61.6401;EPPR=1014.92;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=857;QR=16989;RO=466;RPL=0;RPP=61.6401;RPPR=1014.92;RPR=27;RUN=1;SAF=0;SAP=61.6401;SAR=27;SRF=0;SRP=1014.92;SRR=466;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:151:124,27:124:4538:27:857:-31.963,0,-362.976 0/0:158:158,0:158:5734:0:0:0,-47.5627,-515.981 0/0:128:128,0:128:4690:0:0:0,-38.5318,-422.12 0/0:56:56,0:56:2027:0:0:0,-16.8577,-182.632 dDocent_Contig_905 121 . T C 143.369 . AB=0.192982;ABP=49.6779;AC=1;AF=0.125;AN=8;AO=13;CIGAR=1X;DP=221;DPB=221;DPRA=0.955752;EPP=31.2394;EPPR=454.677;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=423;QR=6877;RO=208;RPL=0;RPP=31.2394;RPPR=454.677;RPR=13;RUN=1;SAF=0;SAP=31.2394;SAR=13;SRF=0;SRP=454.677;SRR=208;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:80:80,0:80:2640:0:0:0,-24.0824,-237.85 0/1:57:46,11:46:1543:11:360:-15.5587,0,-121.999 0/0:51:49,2:49:1583:2:63:0,-9.36909,-136.761 0/0:33:33,0:33:1111:0:0:0,-9.93399,-100.293 dDocent_Contig_906 54 . T C 102.452 . AB=0.131148;ABP=75.0961;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=130;DPB=130;DPRA=2.65217;EPP=20.3821;EPPR=267.93;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=324;QR=4872;RO=122;RPL=8;RPP=20.3821;RPPR=267.93;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=122;SRP=267.93;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:61:53,8:53:2120:8:324:-11.166,0,-172.62 0/0:43:43,0:43:1718:0:0:0,-12.9443,-154.845 0/0:12:12,0:12:480:0:0:0,-3.61236,-43.5505 0/0:14:14,0:14:554:0:0:0,-4.21442,-50.2016 dDocent_Contig_907 16 . A C 274.629 . AB=0.22449;ABP=35.3165;AC=1;AF=0.125;AN=8;AO=15;CIGAR=2M1X4M;DP=361;DPB=347.857;DPRA=0.492481;EPP=35.5824;EPPR=702.224;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=609;QR=12727;RO=322;RPL=0;RPP=35.5824;RPPR=702.224;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=322;SRP=702.224;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:133:124,9,0:124:4903:9,0:354,0:0,-7.81696,-408.988,-37.3277,-411.698,-440.815 0|0:97:88,9,0:88:3472:9,0:361,0:-3.65307,0,-283.354,-30.1437,-286.063,-315.807 0|0:82:75,2,4:75:2971:2,4:81,163:0,-15.8989,-259.82,-9.12946,-246.975,-252.45 0|1:49:35,3,11:35:1381:3,11:118,446:-26.2527,-27.0858,-139.799,0,-103.92,-110.314 dDocent_Contig_908 38 . G A 96.8623 . AB=0.217391;ABP=18.9659;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=140;DPB=140;DPRA=0.818182;EPP=16.0391;EPPR=293.988;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=232;QR=5235;RO=134;RPL=0;RPP=16.0391;RPPR=293.988;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=134;SRP=293.988;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:64:64,0:64:2490:0:0:0,-19.2659,-224.246 0/0:40:39,1:39:1542:1:38:0,-8.24393,-135.217 0/1:23:18,5:18:712:5:194:-10.9081,0,-57.4823 0/0:13:13,0:13:491:0:0:0,-3.91339,-44.5213 dDocent_Contig_910 19 . A G 385.216 . AB=0.368421;ABP=8.7247;AC=2;AF=0.25;AN=8;AO=14;CIGAR=1X;DP=78;DPB=78;DPRA=0.95;EPP=33.4109;EPPR=141.985;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=559;QR=2547;RO=64;RPL=0;RPP=33.4109;RPPR=141.985;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=64;SRP=141.985;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:12,13:12:479:13:518:-39.4375,0,-35.9345 0/0:26:26,0:26:1031:0:0:0,-7.82678,-93.0781 0/1:13:12,1:12:485:1:41:-0.181177,0,-40.0876 0/0:14:14,0:14:552:0:0:0,-4.21442,-50.0208 dDocent_Contig_911 98 . N A 82.6503 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=4;CIGAR=1M14I10X;DP=4;DPB=9.09091;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=21;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=159;QR=0;RO=0;RPL=4;RPP=11.6962;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. 1|1:1:0,1:0:0:1:40:-2.09461,-0.30103,0 .:.:.:.:.:.:.:. 1|1:3:0,3:0:0:3:119:-5.86361,-0.90309,0 dDocent_Contig_913 61 . C T 48.5657 . AB=0.115385;ABP=69.8248;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=120;DPB=120;DPRA=2.29412;EPP=16.0391;EPPR=250.558;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=234;QR=4524;RO=114;RPL=6;RPP=16.0391;RPPR=250.558;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=114;SRP=250.558;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:52:46,6:46:1815:6:234:-5.77738,0,-147.897 0/0:32:32,0:32:1274:0:0:0,-9.63296,-114.931 0/0:26:26,0:26:1030:0:0:0,-7.82678,-92.9953 0/0:10:10,0:10:405:0:0:0,-3.0103,-36.8104 dDocent_Contig_914 92 . G T 57.3572 . AB=0.172414;ABP=30.0414;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=72;DPB=72;DPRA=2.02326;EPP=13.8677;EPPR=146.327;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.984848;PAO=0;PQA=0;PQR=0;PRO=0;QA=171;QR=2226;RO=66;RPL=5;RPP=13.8677;RPPR=146.327;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=66;SRP=146.327;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:26:26,0:26:865:0:0:0,-7.82678,-78.1582 0/1:29:23,5:23:789:5:171:-6.95752,0,-62.5592 0/0:11:11,0:11:362:0:0:0,-3.31133,-32.899 0/0:6:6,0:6:210:0:0:0,-1.80618,-19.2425 dDocent_Contig_916 85 . C G 189.468 . AB=0.292683;ABP=18.3165;AC=1;AF=0.125;AN=8;AO=25;CIGAR=1X;DP=305;DPB=305;DPRA=0;EPP=57.2971;EPPR=587.262;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.956679;PAO=0;PQA=0;PQR=0;PRO=0;QA=731;QR=8255;RO=277;RPL=25;RPP=57.2971;RPPR=604.508;RPR=0;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=275;SRP=587.262;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:114:103,8:103:3098:8:234:0,-12.2297,-257.754 0/0:89:88,1:88:2614:1:18:0,-24.9917,-233.709 0/0:61:57,4:57:1682:4:121:0,-7.17247,-140.453 0/1:41:29,12:29:861:12:358:-20.1686,0,-65.428 dDocent_Contig_917 36 . T C 8894.15 . AB=0.893617;ABP=319.26;AC=5;AF=0.625;AN=8;AO=274;CIGAR=1X;DP=304;DPB=304;DPRA=0;EPP=597.994;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=10871;QR=1117;RO=30;RPL=0;RPP=597.994;RPPR=68.1545;RPR=274;RUN=1;SAF=274;SAP=597.994;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:100:9,91:9:342:91:3638:-297.334,0,-1.02967 1/1:69:5,64:5:166:64:2509:-210.688,-5.51361,0 0/1:80:9,71:9:347:71:2828:-230.546,0,-7.50453 0/1:55:7,48:7:262:48:1896:-154.287,0,-7.37811 dDocent_Contig_918 27 . A G 76.3672 . AB=0.105769;ABP=143.404;AC=1;AF=0.125;AN=8;AO=11;CIGAR=1X;DP=210;DPB=210;DPRA=2.9434;EPP=26.8965;EPPR=435.133;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=439;QR=7918;RO=199;RPL=0;RPP=26.8965;RPPR=435.133;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=199;SRP=435.133;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:104:93,11:93:3708:11:439:-8.55754,0,-302.432 0/0:41:41,0:41:1637:0:0:0,-12.3422,-147.557 0/0:32:32,0:32:1279:0:0:0,-9.63296,-115.38 0/0:33:33,0:33:1294:0:0:0,-9.93399,-116.722 dDocent_Contig_919 10 . T A 7151.31 . AB=0.524838;ABP=5.49131;AC=4;AF=0.5;AN=8;AO=243;CIGAR=1X3M1X;DP=463;DPB=463;DPRA=0;EPP=530.678;EPPR=480.734;GTI=0;LEN=1;MEANALT=1;MQM=58.3745;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.987654;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=9677;QR=8761;RO=220;RPL=0;RPP=530.678;RPPR=480.734;RPR=243;RUN=1;SAF=243;SAP=530.678;SAR=0;SRF=220;SRP=480.734;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:156:66,90:66:2633:90:3587:-272.117,0,-190.148 0|1:138:81,57:81:3225:57:2280:-160.753,0,-248.791 0|1:96:37,59:37:1470:59:2374:-181.489,0,-103.655 0|1:73:36,37:36:1433:37:1436:-106.261,0,-107.253 dDocent_Contig_920 16 . G C 814.991 . AB=0.302752;ABP=39.8456;AC=4;AF=0.5;AN=8;AO=33;CIGAR=1X;DP=109;DPB=109;DPRA=0;EPP=74.6689;EPPR=168.042;GTI=0;LEN=1;MEANALT=1;MQM=59.7879;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=0;PAIREDR=0.986842;PAO=0;PQA=0;PQR=0;PRO=0;QA=1315;QR=3028;RO=76;RPL=0;RPP=74.6689;RPPR=168.042;RPR=33;RUN=1;SAF=33;SAP=74.6689;SAR=0;SRF=76;SRP=168.042;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:20,9:20:776:9:357:-23.7596,0,-61.414 0/1:34:26,8:26:1039:8:309:-17.9289,0,-83.5634 0/1:25:17,8:17:692:8:327:-22.2744,0,-55.0821 0/1:21:13,8:13:521:8:322:-23.0256,0,-40.9155 dDocent_Contig_921 1 . N G 655.29 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=18;CIGAR=1X;DP=18;DPB=18;DPRA=0;EPP=42.0968;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=706;QR=0;RO=0;RPL=0;RPP=42.0968;RPPR=0;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:8:0,8:0:0:8:320:-29.168,-2.40824,0 1/1:1:0,1:0:0:1:25:-2.49986,-0.30103,0 1/1:6:0,6:0:0:6:238:-21.7918,-1.80618,0 1/1:3:0,3:0:0:3:123:-11.4648,-0.90309,0 dDocent_Contig_923 27 . T C 12154.5 . AB=0.882155;ABP=379.757;AC=6;AF=0.75;AN=8;AO=372;CIGAR=1X;DP=412;DPB=412;DPRA=0;EPP=810.798;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=14733;QR=1570;RO=39;RPL=0;RPP=810.798;RPPR=87.6977;RPR=372;RUN=1;SAF=372;SAP=810.798;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:37:0,37:0:0:37:1474:-132.911,-11.1381,0 0/1:250:27,223:27:1086:223:8877:-723.162,0,-22.7708 1/1:78:5,73:5:203:73:2833:-236.419,-4.82729,0 0/1:47:7,39:7:281:39:1549:-125.398,0,-11.4064 dDocent_Contig_924 196 . C T 409.683 . AB=0.148148;ABP=235.277;AC=3;AF=0.375;AN=8;AO=32;CIGAR=1X;DP=244;DPB=244;DPRA=2.57143;EPP=72.4974;EPPR=463.362;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1210;QR=8030;RO=212;RPL=32;RPP=72.4974;RPPR=463.362;RPR=0;RUN=1;SAF=0;SAP=72.4974;SAR=32;SRF=0;SRP=463.362;SRR=212;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:73:59,14:59:2201:14:520:-25.1628,0,-176.342 0/1:108:94,14:94:3567:14:535:-15.9821,0,-288.644 0/1:35:31,4:31:1178:4:155:-3.78939,0,-95.78 0/0:28:28,0:28:1084:0:0:0,-8.42884,-97.8652 dDocent_Contig_925 15 . C T 388.084 . AB=0.326087;ABP=15.095;AC=2;AF=0.25;AN=8;AO=16;CIGAR=1X;DP=113;DPB=113;DPRA=0.77451;EPP=37.7539;EPPR=213.643;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=644;QR=3899;RO=97;RPL=0;RPP=37.7539;RPPR=213.643;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=97;SRP=213.643;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:33:32,1:32:1294:1:40:0,-5.93831,-112.728 0/1:19:15,4:15:597:4:161:-9.15533,0,-48.3451 0/1:27:16,11:16:648:11:443:-32.0968,0,-50.5248 0/0:34:34,0:34:1360:0:0:0,-10.235,-122.661 dDocent_Contig_926 7 . A T 12231.4 . AB=0.507937;ABP=3.45838;AC=4;AF=0.5;AN=8;AO=416;CIGAR=3X;DP=819;DPB=819;DPRA=0;EPP=906.343;EPPR=543.707;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=15888;QR=9471;RO=249;RPL=0;RPP=906.343;RPPR=543.707;RPR=416;RUN=1;SAF=416;SAP=906.343;SAR=0;SRF=249;SRP=543.707;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:353:122,175,51:122:4630:175,51:6704,1919:-513.488,0,-326.984,-392.986,-222.437,-757.292 0|1:206:42,120,35:42:1599:120,35:4574,1355:-362.571,0,-95.0293,-263.902,-19.8404,-384.522 0|1:153:40,84,28:40:1525:84,28:3194,1060:-249.916,0,-99.8206,-175.06,-38.21,-291.737 0|1:107:45,37,24:45:1717:37,24:1416,922:-102.652,0,-129.722,-40.5097,-65.1706,-174.146 dDocent_Contig_927 105 . G A 230.057 . AB=0.138298;ABP=216.646;AC=1;AF=0.125;AN=8;AO=54;CIGAR=1X;DP=587;DPB=587;DPRA=0;EPP=120.27;EPPR=1110.48;GTI=0;LEN=1;MEANALT=2;MQM=48.0926;MQMR=52.9961;NS=4;NUMALT=1;ODDS=0;PAIRED=0.740741;PAIREDR=0.669261;PAO=0;PQA=0;PQR=0;PRO=0;QA=2166;QR=20731;RO=514;RPL=54;RPP=120.27;RPPR=1119.15;RPR=0;RUN=1;SAF=0;SAP=120.27;SAR=54;SRF=1;SRP=1110.48;SRR=513;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:188:158,26:158:6345:26:1041:-23.9263,0,-471.841 0/0:125:116,3:116:4703:3:116:0,-25.3983,-369.371 0/0:172:152,14:152:6139:14:572:0,-1.14872,-468.454 0/0:102:88,11:88:3544:11:437:0,-2.57498,-284.768 dDocent_Contig_931 7 . T C 43352.3 . AB=0.78212;ABP=1294.4;AC=4;AF=0.5;AN=8;AO=1461;CIGAR=1X;DP=1868;DPB=1868;DPRA=0;EPP=3175.53;EPPR=880.285;GTI=0;LEN=1;MEANALT=1.5;MQM=56.5051;MQMR=55.8144;NS=4;NUMALT=1;ODDS=0;PAIRED=0.92334;PAIREDR=0.898515;PAO=0;PQA=0;PQR=0;PRO=0;QA=56212;QR=15457;RO=404;RPL=0;RPP=3175.53;RPPR=880.285;RPR=1461;RUN=1;SAF=1461;SAP=3175.53;SAR=0;SRF=404;SRP=880.285;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:723:164,559:164:6260:559:21528:-1649.28,0,-316.943 0/1:566:125,439:125:4793:439:16864:-1302.82,0,-241.138 0/1:323:70,253:70:2688:253:9715:-757.056,0,-143.192 0/1:256:45,210:45:1716:210:8105:-631.571,0,-77.546 dDocent_Contig_932 1 . N G 77.8225 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=28;MQMR=0;NS=1;NUMALT=1;ODDS=5.586;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=123;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:123:-7.78062,-0.90309,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_937 54 . C G 514.762 . AB=0.180645;ABP=140.317;AC=2;AF=0.25;AN=8;AO=30;CIGAR=1X;DP=233;DPB=233;DPRA=2.65385;EPP=68.1545;EPPR=443.819;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.975369;PAO=0;PQA=0;PQR=0;PRO=0;QA=1191;QR=8158;RO=203;RPL=30;RPP=68.1545;RPPR=443.819;RPR=0;RUN=1;SAF=30;SAP=68.1545;SAR=0;SRF=203;SRP=443.819;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:71:53,18:53:2127:18:712:-43.0284,0,-170.226 0/1:84:74,10:74:2965:10:398:-10.8914,0,-241.646 0/0:52:50,2:50:2024:2:81:0,-7.96783,-174.658 0/0:26:26,0:26:1042:0:0:0,-7.82678,-94.0634 dDocent_Contig_938 9 . G A 1957.57 . AB=0.376238;ABP=29.885;AC=4;AF=0.5;AN=8;AO=76;CIGAR=1X;DP=202;DPB=202;DPRA=0;EPP=168.042;EPPR=276.616;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.952381;PAO=0;PQA=0;PQR=0;PRO=0;QA=2897;QR=4838;RO=126;RPL=0;RPP=168.042;RPPR=276.616;RPR=76;RUN=1;SAF=76;SAP=168.042;SAR=0;SRF=126;SRP=276.616;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:67:47,20:47:1807:20:778:-50.1791,0,-142.711 0/1:71:37,34:37:1426:34:1280:-94.1182,0,-107.247 0/1:35:23,12:23:890:12:453:-30.582,0,-69.8835 0/1:29:19,10:19:715:10:386:-26.3673,0,-55.9436 dDocent_Contig_939 60 . A G 46.5098 . AB=0.107143;ABP=78.0812;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=227;DPB=227;DPRA=0.982456;EPP=16.0391;EPPR=482.906;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.99095;PAO=0;PQA=0;PQR=0;PRO=0;QA=245;QR=8794;RO=221;RPL=6;RPP=16.0391;RPPR=482.906;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=221;SRP=482.906;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:56:50,6:50:2007:6:245:-5.57179,0,-163.959 0/0:61:61,0:61:2440:0:0:0,-18.3628,-219.742 0/0:52:52,0:52:2053:0:0:0,-15.6536,-184.952 0/0:58:58,0:58:2294:0:0:0,-17.4597,-206.619 dDocent_Contig_940 1 . N G 75.9504 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=4.89285;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=80;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:80:-7.59179,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_942 16 . T G 108.193 . AB=0.181818;ABP=32.0291;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=156;DPB=156;DPRA=1.78571;EPP=18.2106;EPPR=326.56;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.872483;PAO=0;PQA=0;PQR=0;PRO=0;QA=272;QR=5967;RO=149;RPL=0;RPP=18.2106;RPPR=326.56;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=149;SRP=326.56;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:67:66,1:66:2644:1:32:0,-16.9697,-234.873 0/1:33:27,6:27:1082:6:240:-12.0412,0,-87.7335 0/0:31:31,0:31:1237:0:0:0,-9.33193,-111.602 0/0:25:25,0:25:1004:0:0:0,-7.52575,-90.6569 dDocent_Contig_943 29 . A C 4805.39 . AB=0.383954;ABP=43.8327;AC=7;AF=0.875;AN=8;AO=134;CIGAR=1X3M1X1M1X;DP=349;DPB=349;DPRA=0;EPP=293.988;EPPR=187.585;GTI=0;LEN=1;MEANALT=4;MQM=59.7463;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5267;QR=3344;RO=85;RPL=0;RPP=293.988;RPPR=187.585;RPR=134;RUN=1;SAF=134;SAP=293.988;SAR=0;SRF=85;SRP=187.585;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:114:26,41,0,47:26:1010:41,0,47:1588,0,1829:-189.925,-67.3151,-137.953,-197.752,-150.295,-280.733,-47.456,0,-130.437,-116.289 0|1:150:43,34,10,60:43:1699:34,10,60:1327,384,2367:-181.513,-85.3796,-214.956,-162.937,-193.672,-299.739,0,-30.7363,-108.294,-121.752 1|1:50:8,13,8,18:8:321:13,8,18:500,320,718:-71.3125,-32.6799,-55.2164,-47.359,-32.7692,-71.4018,-14.5872,0,-14.6766,-35.6206 1|1:35:8,13,4,9:8:314:13,4,9:516,156,353:-43.2783,-3.20497,-25.1165,-32.8645,-16.2075,-57.4841,-16.658,0,-29.6597,-39.7724 dDocent_Contig_944 98 . N A 1651.52 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=54;CIGAR=1X;DP=54;DPB=54;DPRA=0;EPP=120.27;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=4;NUMALT=1;ODDS=6.77626e-21;PAIRED=0.833333;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1814;QR=0;RO=0;RPL=54;RPP=120.27;RPPR=0;RPR=0;RUN=1;SAF=54;SAP=120.27;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:11:0,11:0:0:11:377:-34.2606,-3.31133,0 1/1:16:0,16:0:0:16:532:-48.1953,-4.81648,0 1/1:14:0,14:0:0:14:471:-42.7127,-4.21442,0 1/1:13:0,13:0:0:13:434:-39.3812,-3.91339,0 dDocent_Contig_945 7 . T C 3965.4 . AB=0.276853;ABP=288.899;AC=4;AF=0.5;AN=8;AO=183;CIGAR=1X;DP=661;DPB=661;DPRA=0;EPP=400.39;EPPR=1040.97;GTI=0;LEN=1;MEANALT=1;MQM=54.8033;MQMR=56.3577;NS=4;NUMALT=1;ODDS=0;PAIRED=0.846995;PAIREDR=0.941423;PAO=0;PQA=0;PQR=0;PRO=0;QA=6999;QR=18233;RO=478;RPL=0;RPP=400.39;RPPR=1040.97;RPR=183;RUN=1;SAF=183;SAP=400.39;SAR=0;SRF=478;SRP=1040.97;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:269:181,88:181:6895:88:3353:-210.109,0,-517.687 0/1:218:161,57:161:6122:57:2186:-124.628,0,-469.027 0/1:110:84,26:84:3228:26:995:-50.9624,0,-253.176 0/1:64:52,12:52:1988:12:465:-16.3296,0,-153.399 dDocent_Contig_946 31 . A G 59.6742 . AB=0.12766;ABP=59.6072;AC=1;AF=0.125;AN=8;AO=11;CIGAR=1X;DP=231;DPB=231;DPRA=0.941176;EPP=26.8965;EPPR=480.734;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=433;QR=8723;RO=220;RPL=0;RPP=26.8965;RPPR=480.734;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=220;SRP=480.734;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:91:91,0:91:3592:0:0:0,-27.3937,-323.327 0/1:47:41,6:41:1654:6:233:-7.18905,0,-134.937 0/0:65:60,5:60:2377:5:200:0,-1.18741,-195.707 0/0:28:28,0:28:1100:0:0:0,-8.42884,-99.2906 dDocent_Contig_947 10 . G A 30.1864 . AB=0.12;ABP=34.3664;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=89;DPB=89;DPRA=1.17188;EPP=9.52472;EPPR=189.757;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=0;PAIREDR=0.534884;PAO=0;PQA=0;PQR=0;PRO=0;QA=123;QR=3294;RO=86;RPL=0;RPP=9.52472;RPPR=189.757;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=86;SRP=189.757;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:22,3:22:855:3:123:-3.93904,0,-69.7363 0/0:31:31,0:31:1184:0:0:0,-9.33193,-106.842 0/0:19:19,0:19:724:0:0:0,-5.71957,-65.483 0/0:14:14,0:14:531:0:0:0,-4.21442,-48.1266 dDocent_Contig_948 121 . T C 315.372 . AB=0.172185;ABP=143.955;AC=3;AF=0.375;AN=8;AO=26;CIGAR=1X;DP=192;DPB=192;DPRA=1.22764;EPP=59.4686;EPPR=361.303;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=886;QR=5077;RO=165;RPL=0;RPP=59.4686;RPPR=361.303;RPR=26;RUN=1;SAF=0;SAP=59.4686;SAR=26;SRF=0;SRP=361.303;SRR=165;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:41:41,0:41:1267:0:0:0,-12.3422,-114.309 0/1:72:60,12:60:1889:12:406:-15.192,0,-148.602 0/1:50:39,10:39:1195:10:344:-16.4653,0,-93.0211 0/1:29:25,4:25:726:4:136:-3.84599,0,-56.8839 dDocent_Contig_949 1 . N G 109.118 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.586;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=117;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:117:-10.9102,-0.90309,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_950 11 . C A 3767.78 . AB=0.591346;ABP=18.0853;AC=4;AF=0.5;AN=8;AO=123;CIGAR=1X;DP=208;DPB=208;DPRA=0;EPP=270.101;EPPR=187.585;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4931;QR=3420;RO=85;RPL=0;RPP=270.101;RPPR=187.585;RPR=123;RUN=1;SAF=123;SAP=270.101;SAR=0;SRF=85;SRP=187.585;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:82:37,45:37:1496:45:1802:-137.713,0,-110.197 0/1:45:16,29:16:643:29:1162:-91.3131,0,-44.6585 0/1:51:22,29:22:882:29:1162:-89.5074,0,-64.3331 0/1:30:10,20:10:399:20:805:-63.7342,0,-27.2375 dDocent_Contig_951 25 . G A 160.895 . AB=0.123967;ABP=151.622;AC=1;AF=0.125;AN=8;AO=15;CIGAR=1X;DP=494;DPB=494;DPRA=0.97319;EPP=35.5824;EPPR=1043.15;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=590;QR=18551;RO=479;RPL=0;RPP=35.5824;RPPR=1043.15;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=479;SRP=1043.15;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:121:106,15:106:4136:15:590:-17.0103,0,-335.834 0/0:132:132,0:132:5053:0:0:0,-39.736,-454.723 0/0:157:157,0:157:6063:0:0:0,-47.2617,-545.51 0/0:84:84,0:84:3299:0:0:0,-25.2865,-296.995 dDocent_Contig_952 21 . C T 127.477 . AB=0;ABP=0;AC=0;AF=0;AN=8;AO=3;CIGAR=1X5M3X3M1X2M1X;DP=103;DPB=103;DPRA=2.94444;EPP=9.52472;EPPR=178.9;GTI=0;LEN=1;MEANALT=3;MQM=6;MQMR=60;NS=4;NUMALT=4;ODDS=3.46945e-18;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=18;QR=3178;RO=81;RPL=0;RPP=9.52472;RPPR=178.9;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=81;SRP=178.9;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:30:28,0,0,1,0:28:1084:0,0,1,0:0,0,8,0:0,-8.42884,-97.7713,-8.42884,-97.7713,-97.7713,-8.26178,-97.6017,-97.6017,-97.3007,-8.42884,-97.7713,-97.7713,-97.6017,-97.7713 0|0:41:31,0,0,0,7:31:1228:0,0,0,7:0,0,0,280:-13.9688,-23.3008,-124.45,-23.3008,-124.45,-124.45,-23.3008,-124.45,-124.45,-124.45,0,-101.379,-101.379,-101.379,-99.2719 0|0:23:14,2,4,2,0:14:552:2,4,2,0:74,153,10,0:0,-0.727263,-45.7659,-2.55172,-44.741,-46.9758,-4.34302,-46.5041,-48.3235,-49.344,-4.21442,-46.368,-48.1799,-49.9461,-49.8129 0|0:9:8,0,0,0,0:8:314:0,0,0,0:0,0,0,0:0,-2.40824,-28.2264,-2.40824,-28.2264,-28.2264,-2.40824,-28.2264,-28.2264,-28.2264,-2.40824,-28.2264,-28.2264,-28.2264,-28.2264 dDocent_Contig_953 209 . N G 231.412 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=6;CIGAR=1X;DP=6;DPB=6;DPRA=0;EPP=16.0391;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=245;QR=0;RO=0;RPL=6;RPP=16.0391;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:4:0,4:0:0:4:163:-15.0584,-1.20412,0 ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:82:-7.77968,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_954 17 . C T 183.088 . AB=0.169492;ABP=58.9901;AC=1;AF=0.125;AN=8;AO=10;CIGAR=1X;DP=132;DPB=132;DPRA=2.42466;EPP=24.725;EPPR=267.93;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=407;QR=4925;RO=122;RPL=0;RPP=24.725;RPPR=267.93;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=122;SRP=267.93;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:59:49,10:49:1985:10:407:-19.2296,0,-161.073 0/0:28:28,0:28:1126:0:0:0,-8.42884,-101.62 0/0:35:35,0:35:1409:0:0:0,-10.536,-127.062 0/0:10:10,0:10:405:0:0:0,-3.0103,-36.8104 dDocent_Contig_955 10 . G A 3129.34 . AB=0.0833333;ABP=220.158;AC=0;AF=0;AN=8;AO=12;CIGAR=1X2M1X;DP=233;DPB=233;DPRA=0;EPP=29.068;EPPR=248.387;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=483;QR=4473;RO=113;RPL=0;RPP=29.068;RPPR=248.387;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=113;SRP=248.387;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:67:44,1,22:44:1748:1,22:40,865:-57.8903,-67.8402,-211.449,0,-140.609,-137.282 0|0:89:29,0,60:29:1136:0,60:0,2400:-189.352,-198.082,-291.487,0,-93.7993,-75.7375 0|0:48:29,3,16:29:1157:3,16:122,616:-41.8147,-40.478,-134.871,0,-85.2163,-90.4638 0|0:29:11,8,10:11:432:8,10:321,397:-29.3665,-6.22683,-39.3445,0,-9.07058,-32.5129 dDocent_Contig_956 34 . T G 36.9313 . AB=0.114286;ABP=48.239;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=114;DPB=114;DPRA=1.32911;EPP=11.6962;EPPR=241.872;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=164;QR=4413;RO=110;RPL=0;RPP=11.6962;RPPR=241.872;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=110;SRP=241.872;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:35:31,4:31:1253:4:164:-4.61385,0,-102.5 0/0:37:37,0:37:1492:0:0:0,-11.1381,-134.521 0/0:34:34,0:34:1347:0:0:0,-10.235,-121.487 0/0:8:8,0:8:321:0:0:0,-2.40824,-29.2576 dDocent_Contig_957 91 . C A 138.836 . AB=0.333333;ABP=8.07707;AC=2;AF=0.25;AN=8;AO=7;CIGAR=1X;DP=58;DPB=58;DPRA=0.567568;EPP=18.2106;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=244;QR=1758;RO=51;RPL=7;RPP=18.2106;RPPR=113.755;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:9,3:9:305:3:105:-6.1838,0,-24.167 0/0:30:30,0:30:1038:0:0:0,-9.0309,-93.7315 0/0:7:7,0:7:241:0:0:0,-2.10721,-22.0264 0/1:9:5,4:5:174:4:139:-10.1434,0,-13.2927 dDocent_Contig_958 18 . G A 2314.58 . AB=0.191781;ABP=605.371;AC=4;AF=0.5;AN=8;AO=140;CIGAR=1X;DP=730;DPB=730;DPRA=0;EPP=307.016;EPPR=1215.63;GTI=0;LEN=1;MEANALT=1;MQM=57.3643;MQMR=54.6644;NS=4;NUMALT=1;ODDS=0;PAIRED=0.807143;PAIREDR=0.708475;PAO=0;PQA=0;PQR=0;PRO=0;QA=5102;QR=22971;RO=590;RPL=0;RPP=307.016;RPPR=1284.18;RPR=140;RUN=1;SAF=140;SAP=307.016;SAR=0;SRF=582;SRP=1215.63;SRR=8;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:169:128,41:128:4952:41:1492:-82.3867,0,-367.787 0/1:239:208,31:208:8134:31:1126:-27.4477,0,-640.634 0/1:205:170,35:170:6581:35:1280:-53.7586,0,-496.314 0/1:117:84,33:84:3304:33:1204:-73.3541,0,-259.295 dDocent_Contig_959 9 . A C 61.6632 . AB=0.138889;ABP=43.7857;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=116;DPB=116;DPRA=1.41667;EPP=18.2106;EPPR=239.701;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=273;QR=4185;RO=109;RPL=0;RPP=18.2106;RPPR=239.701;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=109;SRP=239.701;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:31,5:31:1192:5:195:-7.08712,0,-96.7394 0/0:38:38,0:38:1464:0:0:0,-11.4391,-132.037 0/0:32:30,2:30:1148:2:78:0,-2.22949,-96.2144 0/0:10:10,0:10:381:0:0:0,-3.0103,-34.6441 dDocent_Contig_960 12 . T C 489.742 . AB=0.232323;ABP=64.6231;AC=2;AF=0.25;AN=8;AO=23;CIGAR=1X;DP=199;DPB=199;DPRA=0.99;EPP=52.9542;EPPR=385.189;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=895;QR=7099;RO=176;RPL=0;RPP=52.9542;RPPR=385.189;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=176;SRP=385.189;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:79:79,0:79:3177:0:0:0,-23.7814,-285.989 0/1:76:56,20:56:2249:20:784:-47.9906,0,-179.685 0/1:23:20,3:20:814:3:111:-3.42585,0,-66.6504 0/0:21:21,0:21:859:0:0:0,-6.32163,-77.6178 dDocent_Contig_962 30 . G A 49.021 . AB=0.0944206;ABP=335.917;AC=2;AF=0.25;AN=8;AO=24;CIGAR=1X;DP=390;DPB=390;DPRA=0.848485;EPP=55.1256;EPPR=797.769;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.989071;PAO=0;PQA=0;PQR=0;PRO=0;QA=928;QR=14258;RO=366;RPL=0;RPP=55.1256;RPPR=797.769;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=366;SRP=797.769;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:110:110,0:110:4283:0:0:0,-33.1133,-385.45 0/1:147:133,14:133:5180:14:539:-4.60206,0,-421.846 0/1:86:78,8:78:3027:8:314:-2.73706,0,-246.649 0/0:47:45,2:45:1768:2:75:0,-7.02961,-152.222 dDocent_Contig_963 10 . C A 1139.07 . AB=0.241546;ABP=123.113;AC=4;AF=0.5;AN=8;AO=50;CIGAR=1X;DP=207;DPB=207;DPRA=0;EPP=111.584;EPPR=343.931;GTI=0;LEN=1;MEANALT=1;MQM=53.32;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2013;QR=6262;RO=157;RPL=0;RPP=111.584;RPPR=343.931;RPR=50;RUN=1;SAF=50;SAP=111.584;SAR=0;SRF=157;SRP=343.931;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:96:72,24:72:2879:24:975:-58.6871,0,-230.307 0/1:42:30,12:30:1195:12:483:-30.9755,0,-95.1795 0/1:43:35,8:35:1388:8:315:-15.681,0,-112.23 0/1:26:20,6:20:800:6:240:-14.0528,0,-64.4877 dDocent_Contig_964 10 . A C 4828.2 . AB=0.745098;ABP=109.455;AC=4;AF=0.5;AN=8;AO=152;CIGAR=1X1M;DP=204;DPB=204;DPRA=0;EPP=333.074;EPPR=111.584;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6095;QR=1968;RO=50;RPL=0;RPP=333.074;RPPR=111.584;RPR=152;RUN=1;SAF=152;SAP=333.074;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:39:5,2,32:5:200:2,32:79,1278:-103.754,-98.7584,-114.631,0,-9.97921,-6.84542 0|1:56:17,0,39:17:672:0,39:0,1575:-125.124,-130.242,-185.537,0,-55.6929,-43.9528 0|1:69:11,0,58:11:427:0,58:0,2306:-186.932,-190.243,-225.321,0,-35.4677,-18.0079 0|1:40:17,0,23:17:669:0,23:0,936:-72.4998,-77.6173,-132.638,0,-55.4192,-48.4955 dDocent_Contig_966 72 . G A 184.711 . AB=0.466667;ABP=3.15506;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=90;DPB=90;DPRA=1.14286;EPP=20.3821;EPPR=181.071;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=296;QR=3054;RO=82;RPL=8;RPP=20.3821;RPPR=181.071;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=82;SRP=181.071;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:33:32,1:32:1201:1:31:0,-6.83454,-105.288 0/0:30:30,0:30:1110:0:0:0,-9.0309,-100.204 0/1:15:8,7:8:294:7:265:-19.6929,0,-22.2948 0/0:12:12,0:12:449:0:0:0,-3.61236,-40.7564 dDocent_Contig_967 16 . C A 820.567 . AB=0.262069;ABP=74.3095;AC=4;AF=0.5;AN=8;AO=38;CIGAR=1X;DP=145;DPB=145;DPRA=0;EPP=85.5263;EPPR=235.358;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1442;QR=4166;RO=107;RPL=0;RPP=85.5263;RPPR=235.358;RPR=38;RUN=1;SAF=38;SAP=85.5263;SAR=0;SRF=107;SRP=235.358;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:13,11:13:499:11:403:-29.3839,0,-38.0263 0/1:35:30,5:30:1171:5:199:-7.75247,0,-95.1446 0/1:58:42,16:42:1623:16:610:-37.7741,0,-128.859 0/1:28:22,6:22:873:6:230:-12.6357,0,-70.4559 dDocent_Contig_969 94 . A T 39.4266 . AB=0.4;ABP=3.44459;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=8;DPB=8;DPRA=3.33333;EPP=7.35324;EPPR=13.8677;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=72;QR=166;RO=5;RPL=2;RPP=7.35324;RPPR=13.8677;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=5;SRP=13.8677;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:2:2,0:2:61:0:0:0,-0.60206,-5.79353 0/1:5:2,2:2:69:2:72:-5.28607,0,-5.00699 ./.:.:.:.:.:.:.:. 0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827 dDocent_Contig_970 14 . T A 4876.41 . AB=0.534375;ABP=6.29465;AC=4;AF=0.5;AN=8;AO=171;CIGAR=1X4M;DP=320;DPB=322;DPRA=0;EPP=374.332;EPPR=291.816;GTI=0;LEN=1;MEANALT=2.25;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6497;QR=5129;RO=133;RPL=0;RPP=374.332;RPPR=291.816;RPR=171;RUN=1;SAF=171;SAP=374.332;SAR=0;SRF=133;SRP=291.816;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:139:50,0,89:50:1943:0,89:0,3415:-265.641,-280.693,-440.358,0,-160.052,-133.26 0|1:83:53,6,20:53:2040:6,20:237,734:-44.0225,-40.4692,-206.154,0,-147.973,-161.456 0|1:64:25,0,37:25:957:0,37:0,1402:-107.429,-114.954,-193.484,0,-78.5394,-67.4013 0|1:34:5,4,25:5:189:4,25:155,946:-76.0378,-64.8079,-79.0957,0,-2.74871,-7.96101 dDocent_Contig_971 23 . G A 409.584 . AB=0.375;ABP=8.43898;AC=2;AF=0.25;AN=8;AO=15;CIGAR=1X;DP=63;DPB=63;DPRA=1.73913;EPP=35.5824;EPPR=105.07;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=609;QR=1874;RO=47;RPL=0;RPP=35.5824;RPPR=105.07;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:11,0:11:438:0:0:0,-3.31133,-39.772 0/0:12:12,0:12:484:0:0:0,-3.61236,-43.9111 0/1:22:9,12:9:355:12:488:-37.5404,0,-25.5797 0/1:18:15,3:15:597:3:121:-5.86166,0,-48.6489 dDocent_Contig_972 178 . T C 176.296 . AB=0.122449;ABP=185.015;AC=3;AF=0.375;AN=8;AO=19;CIGAR=1X;DP=201;DPB=201;DPRA=0;EPP=44.2683;EPPR=398.218;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=750;QR=6920;RO=182;RPL=19;RPP=44.2683;RPPR=398.218;RPR=0;RUN=1;SAF=0;SAP=44.2683;SAR=19;SRF=0;SRP=398.218;SRR=182;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:60:52,8:52:1957:8:321:-11.1945,0,-158.269 0/1:39:33,6:33:1265:6:225:-8.86576,0,-102.372 0/0:54:53,1:53:2021:1:41:0,-12.1611,-177.993 0/1:48:44,4:44:1677:4:163:-0.608988,0,-136.707 dDocent_Contig_973 11 . C A 5220.99 . AB=0.217352;ABP=762.849;AC=4;AF=0.5;AN=8;AO=238;CIGAR=1X;DP=1095;DPB=1095;DPRA=0;EPP=519.821;EPPR=1863.96;GTI=0;LEN=1;MEANALT=1;MQM=59.7227;MQMR=59.6523;NS=4;NUMALT=1;ODDS=0;PAIRED=0.907563;PAIREDR=0.852975;PAO=0;PQA=0;PQR=0;PRO=0;QA=9519;QR=34268;RO=857;RPL=0;RPP=519.821;RPPR=1863.96;RPR=238;RUN=1;SAF=238;SAP=519.821;SAR=0;SRF=857;SRP=1863.96;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:295:237,58:237:9405:58:2300:-118.338,0,-757.026 0/1:342:260,82:260:10392:82:3300:-194.09,0,-831.467 0/1:339:271,68:271:10887:68:2707:-141.671,0,-873.775 0/1:119:89,30:89:3584:30:1212:-73.4891,0,-286.181 dDocent_Contig_974 17 . T C 6184.93 . AB=0.469613;ABP=5.91359;AC=7;AF=0.875;AN=8;AO=170;CIGAR=1X4M;DP=362;DPB=362;DPRA=0;EPP=372.161;EPPR=118.251;GTI=0;LEN=1;MEANALT=6.5;MQM=60;MQMR=60;NS=4;NUMALT=4;ODDS=0;PAIRED=0.835294;PAIREDR=0.0350877;PAO=0;PQA=0;PQR=0;PRO=0;QA=6742;QR=2253;RO=57;RPL=0;RPP=372.161;RPPR=126.784;RPR=170;RUN=1;SAF=170;SAP=372.161;SAR=0;SRF=56;SRP=118.251;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:116:13,10,20,9,60:13:520:10,20,9,60:383,773,365,2361:-210.939,-183.426,-223.253,-151.371,-162.782,-188.187,-184.75,-196.162,-164.106,-224.878,-20.6417,-32.0553,0,-33.3771,-45.4187 0|1:93:20,4,13,4,43:20:778:4,13,4,43:159,516,154,1720:-135.67,-128.599,-191.326,-99.2121,-150.052,-159.23,-129.047,-179.887,-150.5,-191.774,0,-50.8407,-21.452,-51.2888,-50.9882 1|1:92:16,1,25,8,41:16:631:1,25,8,41:40,977,310,1623:-157.166,-158.687,-210.302,-81.6622,-130.283,-126.052,-136.518,-185.139,-108.114,-186.025,-28.4032,-77.0249,0,-54.8559,-67.9779 1|1:61:8,3,20,2,26:8:324:3,20,2,26:115,777,79,1038:-120.208,-113.179,-138.994,-58.776,-76.0573,-79.4739,-116.116,-133.396,-78.9937,-142.232,-37.1195,-54.4027,0,-57.3392,-56.0136 dDocent_Contig_975 12 . G A 259.922 . AB=0.12973;ABP=223.315;AC=4;AF=0.5;AN=8;AO=24;CIGAR=1X;DP=185;DPB=185;DPRA=0;EPP=55.1256;EPPR=352.617;GTI=0;LEN=1;MEANALT=1;MQM=59.2083;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.958333;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=955;QR=6326;RO=161;RPL=0;RPP=55.1256;RPPR=352.617;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=161;SRP=352.617;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:61:53,8:53:2100:8:312:-10.0792,0,-170.824 0/1:31:27,4:27:1051:4:163:-5.7265,0,-85.5511 0/1:61:54,7:54:2110:7:285:-7.66137,0,-171.717 0/1:32:27,5:27:1065:5:195:-8.01461,0,-86.5051 dDocent_Contig_976 209 . N G 287.725 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=8;CIGAR=1X;DP=8;DPB=8;DPRA=0;EPP=20.3821;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=302;QR=0;RO=0;RPL=8;RPP=20.3821;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:120:-11.1877,-0.90309,0 1/1:2:0,2:0:0:2:78:-7.4033,-0.60206,0 1/1:3:0,3:0:0:3:104:-9.70221,-0.90309,0 ./.:.:.:.:.:.:.:. dDocent_Contig_977 53 . C T 35.4767 . AB=0.2;ABP=10.8276;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X;DP=40;DPB=40;DPRA=1;EPP=7.35324;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=1516;RO=38;RPL=2;RPP=7.35324;RPPR=85.5263;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:13:13,0:13:521:0:0:0,-3.91339,-47.2346 0/1:10:8,2:8:320:2:82:-4.76938,0,-26.1565 0/0:8:8,0:8:316:0:0:0,-2.40824,-28.803 0/0:9:9,0:9:359:0:0:0,-2.70927,-32.6703 dDocent_Contig_978 73 . C G 53.1355 . AB=0.152174;ABP=51.3492;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X;DP=163;DPB=163;DPRA=0.753333;EPP=22.5536;EPPR=337.417;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=292;QR=5300;RO=154;RPL=9;RPP=22.5536;RPPR=337.417;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=154;SRP=337.417;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:50:50,0:50:1704:0:0:0,-15.0515,-153.642 0/0:38:37,1:37:1284:1:34:0,-8.04023,-112.463 0/1:46:39,7:39:1335:7:223:-6.5354,0,-106.597 0/0:29:28,1:28:977:1:35:0,-5.23124,-84.7448 dDocent_Contig_979 15 . G C 5645.67 . AB=0.770492;ABP=80.5425;AC=5;AF=0.625;AN=8;AO=167;CIGAR=1X;DP=196;DPB=196;DPRA=0;EPP=365.646;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6720;QR=1137;RO=28;RPL=0;RPP=365.646;RPPR=63.8115;RPR=167;RUN=1;SAF=167;SAP=365.646;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:74:0,73:0:0:73:2943:-264.543,-21.9752,0 0/1:55:6,49:6:245:49:1982:-162.008,0,-5.87282 0/1:34:12,22:12:488:22:887:-69.8996,0,-34.0363 0/1:33:10,23:10:404:23:908:-72.0834,0,-26.7856 dDocent_Contig_981 69 . A G 623.02 . AB=0.324324;ABP=22.847;AC=1;AF=0.125;AN=8;AO=24;CIGAR=1X;DP=193;DPB=193;DPRA=1.86555;EPP=55.1256;EPPR=367.818;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=950;QR=6610;RO=168;RPL=24;RPP=55.1256;RPPR=367.818;RPR=0;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=168;SRP=367.818;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:59:59,0:59:2327:0:0:0,-17.7608,-209.6 0/1:74:50,24:50:1962:24:950:-63.5238,0,-154.514 0/0:38:37,0:37:1444:0:0:0,-11.1381,-129.906 0/0:22:22,0:22:877:0:0:0,-6.62266,-79.2419 dDocent_Contig_982 46 . C T 344.813 . AB=0.124;ABP=310.004;AC=2;AF=0.25;AN=8;AO=40;CIGAR=1X;DP=527;DPB=527;DPRA=0.712302;EPP=89.8692;EPPR=1060.52;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1598;QR=19187;RO=487;RPL=0;RPP=89.8692;RPPR=1060.52;RPR=40;RUN=1;SAF=40;SAP=89.8692;SAR=0;SRF=487;SRP=1060.52;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:168:168,0:168:6619:0:0:0,-50.573,-595.428 0/1:136:121,15:121:4743:15:594:-12.8569,0,-385.853 0/0:109:100,9:100:3972:9:359:0,-0.139456,-324.797 0/1:114:98,16:98:3853:16:645:-24.0658,0,-312.462 dDocent_Contig_983 32 . C A 1965.66 . AB=0.282143;ABP=118.44;AC=4;AF=0.5;AN=8;AO=79;CIGAR=1X1M2X;DP=280;DPB=281;DPRA=0;EPP=174.557;EPPR=426.447;GTI=0;LEN=1;MEANALT=1.75;MQM=58.7342;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3176;QR=7761;RO=195;RPL=0;RPP=174.557;RPPR=426.447;RPR=79;RUN=1;SAF=79;SAP=174.557;SAR=0;SRF=195;SRP=426.447;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:93:61,32:61:2450:32:1292:-87.338,0,-192.65 0|1:81:60,17:60:2393:17:677:-37.5258,0,-191.954 0|1:85:62,22:62:2441:22:885:-54.2644,0,-194.15 0|1:21:12,8:12:477:8:322:-22.9277,0,-36.861 dDocent_Contig_984 10 . C T 45.2338 . AB=0.157895;ABP=22.325;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=191;DPB=191;DPRA=0.331395;EPP=9.52472;EPPR=411.247;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=123;QR=7566;RO=188;RPL=0;RPP=9.52472;RPPR=411.247;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=188;SRP=411.247;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:76:76,0:76:3060:0:0:0,-22.8783,-275.475 0/0:64:64,0:64:2577:0:0:0,-19.2659,-232.054 0/0:32:32,0:32:1294:0:0:0,-9.63296,-116.723 0/1:19:16,3:16:635:3:123:-5.74522,0,-51.7582 dDocent_Contig_985 9 . C A 20452.5 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=629;CIGAR=1X;DP=662;DPB=662;DPRA=0;EPP=1368.87;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=23957;QR=1225;RO=32;RPL=0;RPP=1368.87;RPPR=72.4974;RPR=629;RUN=1;SAF=629;SAP=1368.87;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:184:0,184:0:0:184:7014:-631.137,-55.3895,0 1/1:196:11,184:11:417:184:6977:-589.951,-21.2119,0 1/1:161:12,149:12:468:149:5657:-466.637,-5.99328,0 1/1:121:9,112:9:340:112:4309:-356.919,-5.46904,0 dDocent_Contig_987 43 . G A 1320.8 . AB=0.160079;ABP=510.843;AC=4;AF=0.5;AN=8;AO=81;CIGAR=1X;DP=506;DPB=506;DPRA=0;EPP=178.9;EPPR=925.886;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3207;QR=16620;RO=425;RPL=0;RPP=178.9;RPPR=925.886;RPR=81;RUN=1;SAF=81;SAP=178.9;SAR=0;SRF=425;SRP=925.886;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:212:178,34:178:7002:34:1368:-59.5608,0,-566.075 0/1:146:131,15:131:5067:15:582:-8.76105,0,-411.992 0/1:93:70,23:70:2729:23:897:-53.042,0,-217.749 0/1:55:46,9:46:1822:9:360:-16.2053,0,-147.624 dDocent_Contig_988 50 . A G 9004.56 . AB=0.0822622;ABP=592.629;AC=1;AF=0.125;AN=8;AO=32;CIGAR=1X3M1X;DP=389;DPB=389;DPRA=0;EPP=72.4974;EPPR=172.385;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1229;QR=2971;RO=78;RPL=32;RPP=72.4974;RPPR=172.385;RPR=0;RUN=1;SAF=32;SAP=72.4974;SAR=0;SRF=78;SRP=172.385;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:113:31,4,78:31:1188:4,78:156,3065:-242.742,-239.251,-335.534,0,-84.66,-74.0035 1|0:88:9,20,59:9:327:20,59:781,2303:-224.114,-162.618,-183.294,-37.5327,0,-46.4631 0|0:127:26,3,98:26:1003:3,98:118,3790:-303.425,-301.545,-383.007,0,-72.651,-52.8577 0|0:61:12,5,44:12:453:5,44:174,1696:-135.665,-125.137,-160.756,0,-23.0109,-23.9012 dDocent_Contig_989 173 . A C 61.3808 . AB=0.138889;ABP=43.7857;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=172;DPB=172;DPRA=0.794118;EPP=13.8677;EPPR=365.646;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=198;QR=6687;RO=167;RPL=5;RPP=13.8677;RPPR=365.646;RPR=0;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=365.646;SRR=167;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:82:82,0:82:3283:0:0:0,-24.6845,-295.528 0/0:39:39,0:39:1566:0:0:0,-11.7402,-141.177 0/1:36:31,5:31:1254:5:198:-7.35992,0,-102.291 0/0:15:15,0:15:584:0:0:0,-4.51545,-52.8933 dDocent_Contig_990 11 . T C 365.144 . AB=0.2;ABP=73.366;AC=1;AF=0.125;AN=8;AO=43;CIGAR=1X2M1X3M1X;DP=527;DPB=527;DPRA=0;EPP=96.3836;EPPR=997.545;GTI=0;LEN=1;MEANALT=3.5;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1683;QR=17893;RO=458;RPL=0;RPP=96.3836;RPPR=997.545;RPR=43;RUN=1;SAF=43;SAP=96.3836;SAR=0;SRF=458;SRP=997.545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:144:122,8,9:122:4779:8,9:314,348:0,-10.8919,-401.475,-8.13633,-375.301,-398.417 0|0:161:148,11,0:148:5772:11,0:431,0:0,-9.11848,-480.229,-44.5524,-483.541,-518.982 0|0:132:119,6,3:119:4655:6,3:227,120:0,-17.1895,-398.18,-25.9214,-390.1,-407.803 0|1:90:69,18,3:69:2687:18,3:711,118:-37.7362,0,-215.402,-48.8008,-211.114,-268.718 dDocent_Contig_991 22 . C A 1900.58 . AB=0.367021;ABP=31.8863;AC=4;AF=0.5;AN=8;AO=69;CIGAR=1X;DP=188;DPB=188;DPRA=0;EPP=152.842;EPPR=261.416;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.97479;PAO=0;PQA=0;PQR=0;PRO=0;QA=2786;QR=4759;RO=119;RPL=0;RPP=152.842;RPPR=261.416;RPR=69;RUN=1;SAF=69;SAP=152.842;SAR=0;SRF=119;SRP=261.416;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:69:25,44:25:1001:44:1778:-139.459,0,-69.6135 0/1:81:74,7:74:2953:7:284:-1.54999,0,-241.467 0/1:17:9,8:9:363:8:321:-24.138,0,-27.9167 0/1:21:11,10:11:442:10:403:-30.3079,0,-33.8135 dDocent_Contig_992 8 . T C 3010.46 . AB=0.385666;ABP=36.279;AC=4;AF=0.5;AN=8;AO=113;CIGAR=1X;DP=293;DPB=293;DPRA=0;EPP=248.387;EPPR=389.532;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.911504;PAIREDR=0.994382;PAO=0;PQA=0;PQR=0;PRO=0;QA=4370;QR=6852;RO=178;RPL=0;RPP=248.387;RPPR=389.532;RPR=113;RUN=1;SAF=113;SAP=248.387;SAR=0;SRF=178;SRP=389.532;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:99:59,40:59:2270:40:1557:-110.595,0,-174.714 0/1:61:44,17:44:1692:17:657:-41.1043,0,-134.178 0/1:89:51,36:51:1972:36:1382:-98.093,0,-151.149 0/1:44:24,20:24:918:20:774:-56.7431,0,-69.6911 dDocent_Contig_993 50 . C T 53.0951 . AB=0.117647;ABP=67.7713;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=164;DPB=164;DPRA=1.35398;EPP=16.0391;EPPR=346.103;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=239;QR=6061;RO=158;RPL=6;RPP=16.0391;RPPR=346.103;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=158;SRP=346.103;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:64:64,0:64:2461:0:0:0,-19.2659,-221.669 0/1:51:45,6:45:1710:6:239:-6.53136,0,-138.779 0/0:32:32,0:32:1245:0:0:0,-9.63296,-112.331 0/0:17:17,0:17:645:0:0:0,-5.11751,-58.3798 dDocent_Contig_994 16 . C A 3777.35 . AB=0.207469;ABP=898.675;AC=4;AF=0.5;AN=8;AO=250;CIGAR=1X;DP=1205;DPB=1205;DPRA=0;EPP=545.878;EPPR=1985.8;GTI=0;LEN=1;MEANALT=1.75;MQM=39.448;MQMR=31.2079;NS=4;NUMALT=1;ODDS=0;PAIRED=0.756;PAIREDR=0.391211;PAO=0;PQA=0;PQR=0;PRO=0;QA=9995;QR=37404;RO=933;RPL=0;RPP=545.878;RPPR=2028.99;RPR=250;RUN=1;SAF=250;SAP=545.878;SAR=0;SRF=928;SRP=1985.8;SRR=5;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:460:358,91:358:14358:91:3639:-158.126,0,-716.221 0/1:372:291,75:291:11706:75:2999:-102.603,0,-581.387 0/1:243:184,54:184:7353:54:2159:-78.5864,0,-386.986 0/1:130:100,30:100:3987:30:1198:-43.909,0,-197.977 dDocent_Contig_995 8 . T C 1590.82 . AB=0.204724;ABP=291.543;AC=4;AF=0.5;AN=8;AO=78;CIGAR=1M1X7M;DP=381;DPB=364.333;DPRA=0;EPP=172.385;EPPR=604.508;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=59.8953;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3014;QR=10774;RO=277;RPL=0;RPP=172.385;RPPR=604.508;RPR=78;RUN=1;SAF=78;SAP=172.385;SAR=0;SRF=277;SRP=604.508;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:126:97,13,16:97:3743:13,16:488,620:-21.7433,-10.9728,-314.421,0,-267.397,-302.555 0|1:154:110,8,35:110:4314:8,35:295,1360:-78.6594,-87.6533,-440.017,0,-330.667,-344.253 0|1:70:54,0,16:54:2098:0,16:0,619:-34.9779,-51.2335,-222.853,0,-172.006,-167.189 0|1:31:16,4,11:16:619:4,11:152,415:-29.1908,-21.5412,-71.1865,0,-38.3853,-47.5379 dDocent_Contig_996 36 . A G 144.063 . AB=0.0986842;ABP=428.276;AC=1;AF=0.125;AN=8;AO=34;CIGAR=1X;DP=788;DPB=788;DPRA=0.912621;EPP=76.8404;EPPR=1640.3;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1348;QR=29700;RO=754;RPL=0;RPP=76.8404;RPPR=1640.3;RPR=34;RUN=1;SAF=34;SAP=76.8404;SAR=0;SRF=754;SRP=1640.3;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:304:274,30:274:10806:30:1184:-15.3271,0,-880.354 0/0:279:279,0:279:11040:0:0:0,-83.9874,-992.898 0/0:133:133,0:133:5201:0:0:0,-40.037,-467.981 0/0:72:68,4:68:2653:4:164:0,-6.52426,-223.765 dDocent_Contig_997 8 . T A 166.11 . AB=0.291667;ABP=12.0581;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X;DP=74;DPB=74;DPRA=5.16667;EPP=22.5536;EPPR=144.156;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.7846;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.876923;PAO=0;PQA=0;PQR=0;PRO=0;QA=348;QR=2504;RO=65;RPL=0;RPP=22.5536;RPPR=144.156;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=65;SRP=144.156;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:17,7:17:657:7:271:-17.5317,0,-52.2423 0/0:38:36,2:36:1381:2:77:0,-4.13,-117.237 0/0:6:6,0:6:234:0:0:0,-1.80618,-21.4311 0/0:6:6,0:6:232:0:0:0,-1.80618,-21.2489 dDocent_Contig_998 10 . A C 181.722 . AB=0.15942;ABP=72.5289;AC=1;AF=0.125;AN=8;AO=15;CIGAR=1X;DP=209;DPB=209;DPRA=1.2967;EPP=35.5824;EPPR=424.276;GTI=0;LEN=1;MEANALT=1;MQM=57.8;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.933333;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=589;QR=7751;RO=194;RPL=0;RPP=35.5824;RPPR=424.276;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=194;SRP=424.276;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:69:58,11:58:2322:11:439:-19.093,0,-188.364 0/0:37:37,0:37:1478:0:0:0,-11.1381,-133.263 0/0:54:54,0:54:2144:0:0:0,-16.2556,-193.141 0/0:49:45,4:45:1807:4:150:0,-2.19443,-150.28 dDocent_Contig_999 12 . C A 77.2893 . AB=0.1125;ABP=107.35;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X;DP=187;DPB=187;DPRA=2.24299;EPP=22.5536;EPPR=389.532;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=363;QR=7163;RO=178;RPL=0;RPP=22.5536;RPPR=389.532;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=178;SRP=389.532;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:53:53,0:53:2134:0:0:0,-15.9546,-192.23 0/1:80:71,9:71:2869:9:363:-8.95078,0,-234.218 0/0:29:29,0:29:1151:0:0:0,-8.72987,-103.869 0/0:25:25,0:25:1009:0:0:0,-7.52575,-91.1019 dDocent_Contig_1000 46 . A T 398.26 . AB=0.428571;ABP=4.56135;AC=3;AF=0.375;AN=8;AO=15;CIGAR=1X;DP=63;DPB=63;DPRA=0.416667;EPP=35.5824;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=591;QR=1889;RO=48;RPL=0;RPP=35.5824;RPPR=107.241;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:28:28,0:28:1098:0:0:0,-8.42884,-99.1075 0/1:8:6,2:6:245:2:82:-5.37144,0,-20.0212 0/1:14:6,8:6:225:8:306:-23.6816,0,-16.3936 0/1:13:8,5:8:321:5:203:-14.7395,0,-25.3441 dDocent_Contig_1001 238 . N G 164.39 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=25;CIGAR=1X;DP=25;DPB=25;DPRA=0;EPP=57.2971;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=7;MQMR=0;NS=3;NUMALT=1;ODDS=6.77626e-21;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=982;QR=0;RO=0;RPL=25;RPP=57.2971;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=57.2971;SAR=25;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:6:0,6:0:0:6:234:-3.84842,-1.80618,0 1/1:2:0,2:0:0:2:72:-1.32856,-0.60206,0 1/1:17:0,17:0:0:17:676:-10.777,-5.11751,0 ./.:.:.:.:.:.:.:. dDocent_Contig_1002 28 . C T 78.8459 . AB=0.132075;ABP=65.3275;AC=2;AF=0.25;AN=8;AO=9;CIGAR=2X;DP=112;DPB=112;DPRA=1.86275;EPP=22.5536;EPPR=226.672;GTI=0;LEN=1;MEANALT=1;MQM=59.7778;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.990291;PAO=0;PQA=0;PQR=0;PRO=0;QA=364;QR=4099;RO=103;RPL=0;RPP=22.5536;RPPR=226.672;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=103;SRP=226.672;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:34:29,5:29:1130:5:202:-8.32685,0,-91.7402 0|0:42:40,2:40:1612:2:81:0,-4.95753,-137.626 0|1:19:17,2:17:685:2:81:-1.96378,0,-56.2614 0|0:17:17,0:17:672:0:0:0,-5.11751,-60.8058 dDocent_Contig_1004 14 . A G 798.224 . AB=0.203046;ABP=153.9;AC=2;AF=0.25;AN=8;AO=41;CIGAR=1X;DP=374;DPB=374;DPRA=2.86325;EPP=92.0407;EPPR=726.111;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1601;QR=13252;RO=333;RPL=0;RPP=92.0407;RPPR=726.111;RPR=41;RUN=1;SAF=41;SAP=92.0407;SAR=0;SRF=333;SRP=726.111;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:153:119,34:119:4746:34:1323:-73.2638,0,-380.982 0/0:138:137,1:137:5464:1:35:0,-38.0435,-488.103 0/1:44:38,6:38:1510:6:243:-9.00228,0,-122.902 0/0:39:39,0:39:1532:0:0:0,-11.7402,-138.121 dDocent_Contig_1005 37 . T C 738.717 . AB=0.471698;ABP=3.37904;AC=1;AF=0.125;AN=8;AO=30;CIGAR=1X;DP=150;DPB=150;DPRA=3.51282;EPP=68.1545;EPPR=263.587;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1205;QR=4693;RO=120;RPL=0;RPP=68.1545;RPPR=263.587;RPR=30;RUN=1;SAF=30;SAP=68.1545;SAR=0;SRF=120;SRP=263.587;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:53:28,25:28:1098:25:1005:-74.7925,0,-83.144 0/0:51:48,3:48:1880:3:120:0,-4.16522,-158.204 0/0:33:31,2:31:1237:2:80:0,-2.3422,-104.012 0/0:13:13,0:13:478:0:0:0,-3.91339,-43.341 dDocent_Contig_1006 132 . G A 283.248 . AB=0.545455;ABP=3.40511;AC=1;AF=0.125;AN=8;AO=12;CIGAR=1X;DP=49;DPB=49;DPRA=2.44444;EPP=29.068;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=395;QR=1247;RO=37;RPL=0;RPP=29.068;RPPR=83.3548;RPR=12;RUN=1;SAF=0;SAP=29.068;SAR=12;SRF=0;SRP=83.3548;SRR=37;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:10,12:10:340:12:395:-29.2456,0,-24.3068 0/0:10:10,0:10:341:0:0:0,-3.0103,-31.0201 0/0:9:9,0:9:300:0:0:0,-2.70927,-27.3245 0/0:8:8,0:8:266:0:0:0,-2.40824,-24.2648 dDocent_Contig_1007 161 . C T 244.958 . AB=0.215385;ABP=48.7448;AC=4;AF=0.5;AN=8;AO=14;CIGAR=1X;DP=65;DPB=65;DPRA=0;EPP=33.4109;EPPR=105.24;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.785714;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=534;QR=1974;RO=51;RPL=14;RPP=33.4109;RPPR=105.24;RPR=0;RUN=1;SAF=0;SAP=33.4109;SAR=14;SRF=0;SRP=113.755;SRR=51;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:10,2:10:384:2:75:-3.50644,0,-31.2942 0/1:23:17,6:17:686:6:215:-12.7665,0,-55.1461 0/1:18:14,4:14:532:4:164:-9.73136,0,-42.7936 0/1:12:10,2:10:372:2:80:-3.97943,0,-30.199 dDocent_Contig_1008 14 . C T 340.308 . AB=0.137056;ABP=228.414;AC=3;AF=0.375;AN=8;AO=32;CIGAR=1X;DP=305;DPB=305;DPRA=0;EPP=72.4974;EPPR=595.822;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1269;QR=10951;RO=273;RPL=0;RPP=72.4974;RPPR=595.822;RPR=32;RUN=1;SAF=32;SAP=72.4974;SAR=0;SRF=273;SRP=595.822;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:108:103,5:103:4131:5:200:0,-14.1317,-353.381 0/1:93:82,11:82:3285:11:422:-10.3347,0,-267.711 0/1:61:55,6:55:2205:6:244:-3.976,0,-180.256 0/1:43:33,10:33:1330:10:403:-23.6864,0,-107.018 dDocent_Contig_1010 167 . C T 31.9183 . AB=0.166667;ABP=26.1727;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=63;DPB=63;DPRA=1.84615;EPP=3.0103;EPPR=131.127;GTI=0;LEN=1;MEANALT=1;MQM=32;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=163;QR=2287;RO=59;RPL=0;RPP=11.6962;RPPR=131.127;RPR=4;RUN=1;SAF=2;SAP=3.0103;SAR=2;SRF=0;SRP=131.127;SRR=59;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:19:19,0:19:731:0:0:0,-5.71957,-66.1076 0/1:24:20,4:20:781:4:163:-4.4134,0,-63.383 0/0:11:11,0:11:435:0:0:0,-3.31133,-39.5005 0/0:9:9,0:9:340:0:0:0,-2.70927,-30.9492 dDocent_Contig_1011 14 . T C 171.753 . AB=0.134021;ABP=115.86;AC=1;AF=0.125;AN=8;AO=19;CIGAR=1X;DP=427;DPB=427;DPRA=0.561845;EPP=44.2683;EPPR=888.971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=58.3848;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=0.583333;PAO=0;PQA=0;PQR=0;PRO=0;QA=770;QR=16351;RO=408;RPL=0;RPP=44.2683;RPPR=888.971;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=408;SRP=888.971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:159:159,0:159:6391:0:0:0,-47.8638,-572.135 0/0:133:129,4:129:5168:4:164:0,-24.8871,-448.383 0/1:97:84,13:84:3348:13:525:-18.3971,0,-271.923 0/0:38:36,2:36:1444:2:81:0,-3.75341,-121.895 dDocent_Contig_1012 7 . T C 10314.5 . AB=0.785548;ABP=306.839;AC=4;AF=0.5;AN=8;AO=337;CIGAR=1X;DP=429;DPB=429;DPRA=0;EPP=734.797;EPPR=202.786;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.98913;PAO=0;PQA=0;PQR=0;PRO=0;QA=12950;QR=3514;RO=92;RPL=0;RPP=734.797;RPPR=202.786;RPR=337;RUN=1;SAF=337;SAP=734.797;SAR=0;SRF=92;SRP=202.786;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:131:32,99:32:1238:99:3803:-302.938,0,-72.2788 0/1:160:30,130:30:1142:130:5007:-402.481,0,-54.9154 0/1:74:9,65:9:345:65:2488:-201.847,0,-9.1324 0/1:64:21,43:21:789:43:1652:-129.677,0,-52.0676 dDocent_Contig_1013 8 . A T 1525.72 . AB=0.4375;ABP=7.35324;AC=4;AF=0.5;AN=8;AO=56;CIGAR=1X;DP=128;DPB=128;DPRA=0;EPP=124.613;EPPR=159.356;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.982143;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2169;QR=2754;RO=72;RPL=0;RPP=124.613;RPPR=159.356;RPR=56;RUN=1;SAF=56;SAP=124.613;SAR=0;SRF=72;SRP=159.356;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:10,16:10:379:16:619:-48.2228,0,-26.6371 0/1:46:31,15:31:1184:15:579:-38.6047,0,-93.0086 0/1:33:14,19:14:534:19:738:-56.8171,0,-38.4678 0/1:23:17,6:17:657:6:233:-14.4164,0,-52.5436 dDocent_Contig_1014 113 . G C 221.303 . AB=0.255319;ABP=27.4509;AC=1;AF=0.125;AN=8;AO=13;CIGAR=1X;DP=198;DPB=198;DPRA=0.584;EPP=31.2394;EPPR=404.733;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=448;QR=6236;RO=185;RPL=0;RPP=31.2394;RPPR=404.733;RPR=13;RUN=1;SAF=0;SAP=31.2394;SAR=13;SRF=0;SRP=404.733;SRR=185;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:67:67,0:67:2292:0:0:0,-20.169,-206.547 0/0:58:58,0:58:1954:0:0:0,-17.4597,-176.134 0/1:47:35,12:35:1185:12:413:-23.3522,0,-92.8028 0/0:26:25,1:25:805:1:35:0,-4.32815,-69.2468 dDocent_Contig_1016 16 . A G 45.3072 . AB=0.129032;ABP=40.0654;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=64;DPB=64;DPRA=2.81818;EPP=11.6962;EPPR=133.299;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.933333;PAO=0;PQA=0;PQR=0;PRO=0;QA=160;QR=2396;RO=60;RPL=0;RPP=11.6962;RPPR=133.299;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:27,4:27:1082:4:160:-5.4515,0,-88.3383 0/0:15:15,0:15:611:0:0:0,-4.51545,-55.3273 0/0:11:11,0:11:443:0:0:0,-3.31133,-40.2257 0/0:7:7,0:7:260:0:0:0,-2.10721,-23.7455 dDocent_Contig_1017 58 . A G 31.3508 . AB=0.130435;ABP=30.2953;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=70;DPB=70;DPRA=1.46809;EPP=9.52472;EPPR=148.499;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=121;QR=2612;RO=67;RPL=3;RPP=9.52472;RPPR=148.499;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=67;SRP=148.499;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:30:30,0:30:1182:0:0:0,-9.0309,-106.664 0/1:23:20,3:20:793:3:121:-4.35651,0,-64.7668 0/0:12:12,0:12:433:0:0:0,-3.61236,-39.2995 0/0:5:5,0:5:204:0:0:0,-1.50515,-18.744 dDocent_Contig_1018 9 . A C 160.77 . AB=0.161765;ABP=70.5814;AC=2;AF=0.25;AN=8;AO=11;CIGAR=1X;DP=137;DPB=137;DPRA=0.985507;EPP=26.8965;EPPR=276.616;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.992063;PAO=0;PQA=0;PQR=0;PRO=0;QA=425;QR=4853;RO=126;RPL=0;RPP=26.8965;RPPR=276.616;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=126;SRP=276.616;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:47:47,0:47:1814:0:0:0,-14.1484,-163.511 0/1:39:33,6:33:1273:6:231:-9.41774,0,-103.12 0/1:29:24,5:24:918:5:194:-9.10297,0,-74.2075 0/0:22:22,0:22:848:0:0:0,-6.62266,-76.6425 dDocent_Contig_1019 14 . C T 406.667 . AB=0.0691824;ABP=259.34;AC=0;AF=0;AN=8;AO=11;CIGAR=1X1M1X;DP=789;DPB=789;DPRA=0.582418;EPP=26.8965;EPPR=1549.1;GTI=0;LEN=1;MEANALT=4;MQM=38;MQMR=46.4761;NS=4;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0.210674;PAO=0;PQA=0;PQR=0;PRO=0;QA=439;QR=28321;RO=712;RPL=0;RPP=26.8965;RPPR=1549.1;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=712;SRP=1549.1;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:307:286,0,0:286:11411:0,0:0,0:0,-86.0946,-875.279,-86.0946,-875.279,-875.279 0|0:239:227,0,0:227:9043:0,0:0,0:0,-68.3338,-666.801,-68.3338,-666.801,-666.801 0|0:159:123,11,23:123:4853:11,23:439,932:-39.864,-44.7783,-373.525,0,-299.972,-325.174 0|0:84:76,0,8:76:3014:0,8:0,313:-3.24441,-26.1227,-231.935,0,-206.198,-203.79 dDocent_Contig_1020 133 . C T 368.546 . AB=0.3;ABP=20.3821;AC=3;AF=0.375;AN=8;AO=15;CIGAR=1X;DP=68;DPB=68;DPRA=0.925926;EPP=35.5824;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=608;QR=2080;RO=53;RPL=0;RPP=35.5824;RPPR=118.098;RPR=15;RUN=1;SAF=0;SAP=35.5824;SAR=15;SRF=0;SRP=118.098;SRR=53;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:18:18,0:18:698:0:0:0,-5.41854,-63.1332 0/1:16:14,2:14:565:2:81:-2.86925,0,-46.3749 0/1:14:9,5:9:358:5:204:-14.5296,0,-28.3674 0/1:20:12,8:12:459:8:323:-23.4175,0,-35.6299 dDocent_Contig_1021 107 . N A 56.0739 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=4.89285;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=59;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:59:-5.60414,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_1022 106 . N C 483.783 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=16;CIGAR=2X;DP=16;DPB=16;DPRA=0;EPP=37.7539;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=14.5969;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=534;QR=0;RO=0;RPL=0;RPP=37.7539;RPPR=0;RPR=16;RUN=1;SAF=0;SAP=37.7539;SAR=16;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:16:0,16:0:0:16:534:-48.3783,-4.81648,0 .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. dDocent_Contig_1023 53 . A G 14240.6 . AB=0.311728;ABP=202.518;AC=4;AF=0.5;AN=8;AO=202;CIGAR=1X2M1X1M2I2M;DP=648;DPB=805.143;DPRA=0;EPP=441.648;EPPR=215.815;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.255102;PAO=0;PQA=0;PQR=0;PRO=0;QA=7811;QR=3738;RO=98;RPL=202;RPP=441.648;RPPR=215.815;RPR=0;RUN=1;SAF=202;SAP=441.648;SAR=0;SRF=98;SRP=215.815;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:191:21,71,99:21:790:71,99:2763,3927:-479.284,-258.544,-301.889,-162.356,0,-197.273 1|0:225:40,40,143:40:1515:40,143:1553,5656:-456.83,-341.272,-453.432,-3.40487,0,-84.5587 1|0:139:21,44,74:21:811:44,74:1684,2909:-304.517,-172.656,-226.016,-71.5757,0,-115.907 1|0:93:16,47,30:16:622:47,30:1811,1170:-188.923,-45.0485,-82.0133,-97.5771,0,-139.661 dDocent_Contig_1024 74 . T A 6332.62 . AB=0.571101;ABP=22.1551;AC=4;AF=0.5;AN=8;AO=249;CIGAR=1X;DP=436;DPB=436;DPRA=0;EPP=543.707;EPPR=409.076;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=8544;QR=6157;RO=187;RPL=249;RPP=543.707;RPPR=409.076;RPR=0;RUN=1;SAF=249;SAP=543.707;SAR=0;SRF=187;SRP=409.076;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:196:127,69:127:4176:69:2324:-150.41,0,-317.033 0/1:132:18,114:18:612:114:3957:-316.58,0,-15.6636 0/1:69:31,38:31:1026:38:1289:-95.5312,0,-71.8713 0/1:39:11,28:11:343:28:974:-76.2309,0,-19.4314 dDocent_Contig_1025 127 . G T 28132.9 . AB=0.768595;ABP=306.299;AC=6;AF=0.75;AN=8;AO=885;CIGAR=2X;DP=1010;DPB=1010;DPRA=0;EPP=1830.41;EPPR=259.315;GTI=0;LEN=1;MEANALT=1.75;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=2.77556e-17;PAIRED=0.899435;PAIREDR=0.860656;PAO=0;PQA=0;PQR=0;PRO=0;QA=33329;QR=4780;RO=122;RPL=874;RPP=1830.41;RPPR=259.315;RPR=11;RUN=1;SAF=0;SAP=1924.76;SAR=885;SRF=0;SRP=267.93;SRR=122;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:256:80,175:80:3146:175:6600:-516.796,0,-206.118 1|1:254:0,253:0:0:253:9630:-866.121,-76.1606,0 1|1:272:11,260:11:408:260:9708:-836.385,-44.9187,0 0|1:228:31,197:31:1226:197:7391:-596.433,0,-41.9846 dDocent_Contig_1030 21 . A G 4637.12 . AB=0.019544;ABP=618.556;AC=0;AF=0;AN=8;AO=6;CIGAR=2X1M1X;DP=307;DPB=307;DPRA=0;EPP=16.0391;EPPR=307.016;GTI=0;LEN=1;MEANALT=2.25;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=241;QR=5506;RO=140;RPL=0;RPP=16.0391;RPPR=307.016;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=140;SRP=307.016;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:103:56,2,45:56:2200:2,45:80,1788:-130.333,-140.6,-320.929,0,-174.336,-167.38 0|0:101:47,1,49:47:1848:1,49:40,1970:-148.193,-159.047,-310.741,0,-148.698,-137.243 0|0:79:34,1,44:34:1339:1,44:41,1718:-130.961,-137.811,-247.663,0,-106.751,-96.8905 0|0:24:3,2,19:3:119:2,19:80,738:-59.7146,-54.0267,-63.2218,0,-3.20279,-4.07449 dDocent_Contig_1031 12 . T A 2370.45 . AB=0.328185;ABP=69.4205;AC=3;AF=0.375;AN=8;AO=85;CIGAR=3M1X7M;DP=259;DPB=259.909;DPRA=0;EPP=187.585;EPPR=298.331;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3421;QR=5333;RO=136;RPL=0;RPP=187.585;RPPR=298.331;RPR=85;RUN=1;SAF=85;SAP=187.585;SAR=0;SRF=136;SRP=298.331;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:97:53,7,13,24:53:2073:7,13,24:263,490,968:-63.851,-58.2698,-226.6,-39.6606,-188.559,-206.182,0,-148.912,-130.301,-163.225 0|1:86:33,0,4,49:33:1290:0,4,49:0,154,1967:-152.153,-162.087,-268.138,-149.443,-255.494,-254.29,0,-106.06,-93.4156,-91.3092 0|0:48:30,5,7,6:30:1182:5,7,6:174,260,240:-12.2427,-7.1394,-102.884,0,-83.1175,-95.1489,-1.49165,-84.6185,-77.485,-96.9517 0|1:28:20,2,0,6:20:788:2,0,6:82,0,246:-14.2839,-13.5363,-77.7506,-20.3045,-78.3527,-85.1217,0,-58.0445,-64.8141,-63.008 dDocent_Contig_1032 40 . T A 283.77 . AB=0.111111;ABP=26.6552;AC=0;AF=0;AN=8;AO=3;CIGAR=1M1X3M;DP=123;DPB=126;DPRA=1.6;EPP=9.52472;EPPR=226.672;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=120;QR=3974;RO=103;RPL=0;RPP=9.52472;RPPR=226.672;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=103;SRP=226.672;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:46:43,0,1:43:1653:0,1:0,38:0,-12.9443,-148.798,-9.7412,-145.681,-145.38 0|0:39:30,9,0:30:1138:9,0:339,0:-19.1185,0,-90.9657,-28.1494,-93.675,-121.447 0|0:18:11,5,2:11:437:5,2:184,82:-11.7022,0,-34.4619,-8.23341,-29.197,-43.6291 0|0:20:19,1,0:19:746:1,0:38,0:0,-2.22333,-63.6694,-5.71957,-63.9705,-67.0864 dDocent_Contig_1033 15 . T G 8906.08 . AB=0.546789;ABP=13.3736;AC=4;AF=0.5;AN=8;AO=298;CIGAR=1X;DP=545;DPB=545;DPRA=0;EPP=650.109;EPPR=537.193;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.995935;PAO=0;PQA=0;PQR=0;PRO=0;QA=11776;QR=9748;RO=246;RPL=0;RPP=650.109;RPPR=537.193;RPR=298;RUN=1;SAF=298;SAP=650.109;SAR=0;SRF=246;SRP=537.193;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:189:87,102:87:3465:102:3999:-303.016,0,-255.003 0/1:189:99,90:99:3941:90:3578:-265.172,0,-297.782 0/1:105:31,73:31:1208:73:2898:-229.214,0,-77.2764 0/1:62:29,33:29:1134:33:1301:-98.6955,0,-83.6715 dDocent_Contig_1034 95 . T C 225.027 . AB=0.314286;ABP=13.4954;AC=1;AF=0.125;AN=8;AO=11;CIGAR=1X;DP=208;DPB=208;DPRA=0.606936;EPP=26.8965;EPPR=430.79;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.994924;PAO=0;PQA=0;PQR=0;PRO=0;QA=377;QR=6866;RO=197;RPL=11;RPP=26.8965;RPPR=430.79;RPR=0;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=197;SRP=430.79;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:68:68,0:68:2403:0:0:0,-20.47,-216.53 0/1:35:24,11:24:831:11:377:-23.7245,0,-64.5683 0/0:71:71,0:71:2434:0:0:0,-21.3731,-219.312 0/0:34:34,0:34:1198:0:0:0,-10.235,-108.127 dDocent_Contig_1035 148 . T G 113.555 . AB=0.122807;ABP=143.889;AC=1;AF=0.125;AN=8;AO=14;CIGAR=1X;DP=377;DPB=377;DPRA=1.30038;EPP=33.4109;EPPR=789.083;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=514;QR=13563;RO=362;RPL=0;RPP=33.4109;RPPR=789.083;RPR=14;RUN=1;SAF=0;SAP=33.4109;SAR=14;SRF=0;SRP=789.083;SRR=362;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:114:100,14:100:3768:14:514:-12.2764,0,-304.912 0/0:136:135,0:135:5032:0:0:0,-40.639,-452.567 0/0:75:75,0:75:2817:0:0:0,-22.5772,-253.714 0/0:52:52,0:52:1946:0:0:0,-15.6536,-175.384 dDocent_Contig_1036 74 . C A 40.2087 . AB=0.142857;ABP=34.0313;AC=2;AF=0.25;AN=8;AO=4;CIGAR=1X;DP=66;DPB=66;DPRA=0.736842;EPP=11.6962;EPPR=137.642;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=147;QR=2223;RO=62;RPL=4;RPP=11.6962;RPPR=137.642;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:23:23,0:23:832:0:0:0,-6.92369,-75.201 0/0:15:15,0:15:525:0:0:0,-4.51545,-47.5763 0/1:17:14,3:14:508:3:111:-5.23641,0,-40.9412 0/1:11:10,1:10:358:1:36:-0.286945,0,-29.2507 dDocent_Contig_1037 25 . T C 3008.55 . AB=0.270455;ABP=204.385;AC=4;AF=0.5;AN=8;AO=119;CIGAR=2M1X8M;DP=440;DPB=435.455;DPRA=0;EPP=261.416;EPPR=643.595;GTI=0;LEN=1;MEANALT=2.25;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.99661;PAO=0;PQA=0;PQR=0;PRO=0;QA=4794;QR=11648;RO=295;RPL=0;RPP=261.416;RPPR=643.595;RPR=119;RUN=1;SAF=119;SAP=261.416;SAR=0;SRF=295;SRP=643.595;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:180:129,9,41:129:5099:9,41:330,1650:-97.1741,-109.049,-525.939,0,-392.665,-407.285 0|1:163:112,2,49:112:4414:2,49:82,1980:-129.514,-156.461,-518.993,0,-356.358,-348.376 0|1:60:30,11,19:30:1192:11,19:442,760:-53.5661,-26.173,-120.996,0,-61.7077,-92.4126 0|1:37:24,3,10:24:943:3,10:118,404:-26.0902,-23.6109,-100.262,0,-67.8552,-74.5514 dDocent_Contig_1038 9 . G A 1833.75 . AB=0.43038;ABP=9.66215;AC=4;AF=0.5;AN=8;AO=68;CIGAR=1X;DP=158;DPB=158;DPRA=0;EPP=150.67;EPPR=173.254;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.5111;NS=4;NUMALT=1;ODDS=0;PAIRED=0.882353;PAIREDR=0.788889;PAO=0;PQA=0;PQR=0;PRO=0;QA=2612;QR=3447;RO=90;RPL=0;RPP=150.67;RPPR=198.443;RPR=68;RUN=1;SAF=68;SAP=150.67;SAR=0;SRF=87;SRP=173.254;SRR=3;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:56:26,30:26:1009:30:1141:-86.1318,0,-74.2622 0/1:47:33,14:33:1255:14:544:-35.1575,0,-99.0823 0/1:36:21,15:21:807:15:578:-41.524,0,-61.9794 0/1:19:10,9:10:376:9:349:-26.0512,0,-28.4704 dDocent_Contig_1040 20 . G A 141.421 . AB=0.152542;ABP=64.8789;AC=1;AF=0.125;AN=8;AO=13;CIGAR=1X;DP=149;DPB=149;DPRA=2.77083;EPP=31.2394;EPPR=298.331;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.963235;PAO=0;PQA=0;PQR=0;PRO=0;QA=517;QR=5267;RO=136;RPL=0;RPP=31.2394;RPPR=298.331;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=136;SRP=298.331;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:51:48,3:48:1825:3:112:0,-4.90724,-154.011 0/1:59:50,9:50:1950:9:364:-15.364,0,-157.939 0/0:23:22,1:22:860:1:41:0,-2.82912,-73.6182 0/0:16:16,0:16:632:0:0:0,-4.81648,-57.2099 dDocent_Contig_1041 69 . A G 324.459 . 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AB=0.182927;ABP=74.6159;AC=1;AF=0.125;AN=8;AO=18;CIGAR=3M1X1M;DP=302;DPB=305;DPRA=0.649123;EPP=42.0968;EPPR=606.68;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=698;QR=10991;RO=278;RPL=18;RPP=42.0968;RPPR=606.68;RPR=0;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=278;SRP=606.68;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:82:66,0,15:66:2574:0,15:0,581:-28.1264,-47.9944,-259.563,0,-211.846,-207.331 0|0:114:114,0,0:114:4531:0,0:0,0:0,-34.3174,-407.754,-34.3174,-407.754,-407.754 0|0:66:63,0,3:63:2509:0,3:0,117:0,-18.9649,-225.569,-8.95828,-215.952,-215.049 0|0:40:35,5,0:35:1377:5,0:201,0:-6.4299,0,-112.154,-16.966,-113.66,-130.225 dDocent_Contig_1043 36 . G A 109.359 . AB=0.145455;ABP=63.0614;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=149;DPB=149;DPRA=1.75532;EPP=20.3821;EPPR=309.188;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=315;QR=5499;RO=141;RPL=0;RPP=20.3821;RPPR=309.188;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=141;SRP=309.188;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:45:45,0:45:1781:0:0:0,-13.5463,-160.515 0/1:55:47,8:47:1836:8:315:-12.1578,0,-148.895 0/0:33:33,0:33:1262:0:0:0,-9.93399,-113.85 0/0:16:16,0:16:620:0:0:0,-4.81648,-56.1311 dDocent_Contig_1044 68 . A G 4460.26 . AB=0.501377;ABP=3.01628;AC=4;AF=0.5;AN=8;AO=182;CIGAR=1X;DP=363;DPB=363;DPRA=0;EPP=398.218;EPPR=396.047;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6218;QR=6195;RO=181;RPL=182;RPP=398.218;RPPR=396.047;RPR=0;RUN=1;SAF=182;SAP=398.218;SAR=0;SRF=0;SRP=396.047;SRR=181;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:182:91,91:91:3130:91:3103:-224.723,0,-227.155 0/1:107:53,54:53:1810:54:1851:-134.662,0,-130.973 0/1:54:27,27:27:907:27:917:-66.5852,0,-65.6812 0/1:20:10,10:10:348:10:347:-25.5447,0,-25.6354 dDocent_Contig_1045 62 . T C 149.779 . AB=0.12381;ABP=132.078;AC=1;AF=0.125;AN=8;AO=13;CIGAR=1X;DP=292;DPB=292;DPRA=1.68449;EPP=31.2394;EPPR=608.851;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=524;QR=11046;RO=279;RPL=13;RPP=31.2394;RPPR=608.851;RPR=0;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=279;SRP=608.851;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:105:92,13:92:3674:13:524:-15.8988,0,-299.063 0/0:78:78,0:78:3074:0:0:0,-23.4803,-276.75 0/0:75:75,0:75:2983:0:0:0,-22.5772,-268.555 0/0:34:34,0:34:1315:0:0:0,-10.235,-118.601 dDocent_Contig_1047 14 . T C 3284.25 . AB=0.598901;ABP=18.4731;AC=4;AF=0.5;AN=8;AO=109;CIGAR=1X1M1X;DP=182;DPB=182;DPRA=0;EPP=239.701;EPPR=161.528;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4306;QR=2907;RO=73;RPL=0;RPP=239.701;RPPR=161.528;RPR=109;RUN=1;SAF=109;SAP=239.701;SAR=0;SRF=73;SRP=161.528;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:38:21,17:21:828:17:679:-50.0006,0,-63.3973 0|1:45:18,27:18:727:27:1068:-82.867,0,-52.2091 0|1:47:13,34:13:515:34:1330:-105.819,0,-32.5474 0|1:52:21,31:21:837:31:1229:-95.2274,0,-59.9884 dDocent_Contig_1048 145 . A C 37.1855 . AB=0.147059;ABP=39.7976;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=113;DPB=113;DPRA=1.29114;EPP=13.8677;EPPR=237.529;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=165;QR=3767;RO=108;RPL=0;RPP=13.8677;RPPR=237.529;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=237.529;SRR=108;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:34:34,0:34:1171:0:0:0,-10.235,-105.687 0/0:29:29,0:29:1009:0:0:0,-8.72987,-91.1196 0/1:34:29,5:29:1030:5:165:-4.94031,0,-82.7787 0/0:16:16,0:16:557:0:0:0,-4.81648,-50.4571 dDocent_Contig_1049 15 . T C 146.683 . AB=0.315789;ABP=8.61041;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=226;DPB=226;DPRA=0.275362;EPP=16.0391;EPPR=478.563;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=236;QR=8109;RO=219;RPL=0;RPP=16.0391;RPPR=478.563;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=219;SRP=478.563;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:105:104,0:104:3850:0:0:0,-31.3071,-346.514 0/0:89:89,0:89:3286:0:0:0,-26.7917,-295.89 0/1:19:13,6:13:491:6:236:-15.8901,0,-38.811 0/0:13:13,0:13:482:0:0:0,-3.91339,-43.7196 dDocent_Contig_1050 21 . C T 114.663 . AB=0.170732;ABP=41.6201;AC=2;AF=0.25;AN=8;AO=8;CIGAR=1X;DP=83;DPB=83;DPRA=1.05;EPP=20.3821;EPPR=163.699;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=324;QR=2951;RO=74;RPL=0;RPP=20.3821;RPPR=163.699;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=74;SRP=163.699;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:22:21,1:21:838:1:40:0,-2.62698,-71.7381 0/0:20:20,0:20:780:0:0:0,-6.0206,-70.5117 0/1:24:19,5:19:764:5:204:-11.5193,0,-61.8539 0/1:17:14,2:14:569:2:80:-2.37574,0,-46.3354 dDocent_Contig_1051 7 . T A 345.223 . AB=0.3;ABP=20.3821;AC=2;AF=0.25;AN=8;AO=15;CIGAR=1X;DP=162;DPB=162;DPRA=0.446429;EPP=35.5824;EPPR=322.217;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=570;QR=5612;RO=147;RPL=0;RPP=35.5824;RPPR=322.217;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=147;SRP=322.217;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:71:71,0:71:2700:0:0:0,-21.3731,-243.191 0/0:41:41,0:41:1583:0:0:0,-12.3422,-142.738 0/1:31:22,9:22:830:9:348:-22.3484,0,-65.6849 0/1:19:13,6:13:499:6:222:-14.6176,0,-39.538 dDocent_Contig_1052 91 . A G 77.8258 . AB=0.156863;ABP=55.1682;AC=1;AF=0.125;AN=8;AO=15;CIGAR=1X;DP=144;DPB=144;DPRA=0;EPP=35.5824;EPPR=283.13;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.984496;PAO=0;PQA=0;PQR=0;PRO=0;QA=474;QR=4366;RO=129;RPL=15;RPP=35.5824;RPPR=283.13;RPR=0;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=129;SRP=283.13;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:42:40,2:40:1358:2:68:0,-6.18538,-116.061 0/1:51:43,8:43:1459:8:267:-9.00391,0,-116.251 0/0:36:32,4:32:1082:4:104:0,-1.2197,-88.0671 0/0:15:14,1:14:467:1:35:0,-1.01682,-38.8513 dDocent_Contig_1053 81 . A G 127.713 . AB=0.191489;ABP=41.8658;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X;DP=110;DPB=110;DPRA=2.2381;EPP=22.5536;EPPR=222.329;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.980198;PAO=0;PQA=0;PQR=0;PRO=0;QA=309;QR=3608;RO=101;RPL=9;RPP=22.5536;RPPR=222.329;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=101;SRP=222.329;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:24:24,0:24:865:0:0:0,-7.22472,-78.1658 0/1:47:38,9:38:1372:9:309:-13.9932,0,-109.626 0/0:21:21,0:21:727:0:0:0,-6.32163,-65.7448 0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2878 dDocent_Contig_1054 11 . G C 13590.2 . AB=0.489489;ABP=3.96888;AC=4;AF=0.5;AN=8;AO=489;CIGAR=1X2M1X;DP=999;DPB=999;DPRA=0;EPP=1064.86;EPPR=1106.12;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=18497;QR=19347;RO=508;RPL=0;RPP=1064.86;RPPR=1106.12;RPR=489;RUN=1;SAF=489;SAP=1064.86;SAR=0;SRF=508;SRP=1106.12;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:297:158,139:158:6038:139:5247:-382.863,0,-453.946 0|1:316:139,175:139:5329:175:6618:-500.649,0,-384.69 0|1:231:127,104:127:4807:104:3936:-284.819,0,-363.128 0|1:155:84,71:84:3173:71:2696:-196.176,0,-239.075 dDocent_Contig_1055 56 . T A 1819.46 . AB=0.457143;ABP=5.24381;AC=4;AF=0.5;AN=8;AO=64;CIGAR=1X;DP=140;DPB=140;DPRA=0;EPP=141.985;EPPR=168.042;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2536;QR=2991;RO=76;RPL=64;RPP=141.985;RPPR=168.042;RPR=0;RUN=1;SAF=64;SAP=141.985;SAR=0;SRF=76;SRP=168.042;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:40:20,20:20:791:20:795:-59.8287,0,-59.4679 0/1:44:21,23:21:810:23:910:-68.9613,0,-59.9627 0/1:43:29,14:29:1145:14:547:-36.625,0,-90.3887 0/1:13:6,7:6:245:7:284:-22.02,0,-18.5161 dDocent_Contig_1056 78 . C T 386.888 . AB=0.285714;ABP=25.3454;AC=1;AF=0.125;AN=8;AO=27;CIGAR=1X;DP=233;DPB=233;DPRA=0;EPP=61.6401;EPPR=450.334;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1052;QR=7372;RO=206;RPL=27;RPP=61.6401;RPPR=450.334;RPR=0;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=206;SRP=450.334;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:51:47,4:47:1697:4:156:0,-0.935241,-138.593 0/0:67:63,4:63:2359:4:159:0,-5.47668,-197.83 0/1:56:40,16:40:1412:16:627:-39.9103,0,-110.511 0/0:59:56,3:56:1904:3:110:0,-7.50116,-161.358 dDocent_Contig_1057 1 . N G 988.864 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=28;CIGAR=1X;DP=28;DPB=28;DPRA=0;EPP=55.4358;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=0.928571;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1076;QR=0;RO=0;RPL=0;RPP=63.8115;RPPR=0;RPR=28;RUN=1;SAF=27;SAP=55.4358;SAR=1;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:9:0,9:0:0:9:338:-30.7624,-2.70927,0 1/1:11:0,11:0:0:11:434:-39.4141,-3.31133,0 1/1:6:0,6:0:0:6:224:-20.5152,-1.80618,0 1/1:2:0,2:0:0:2:80:-7.59179,-0.60206,0 dDocent_Contig_1058 25 . G A 97.483 . AB=0.444444;ABP=3.25157;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X;DP=227;DPB=227;DPRA=0.787402;EPP=22.5536;EPPR=476.391;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.977064;PAO=0;PQA=0;PQR=0;PRO=0;QA=345;QR=8703;RO=218;RPL=0;RPP=22.5536;RPPR=476.391;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=218;SRP=476.391;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:71:71,0:71:2844:0:0:0,-21.3731,-256.068 0/0:91:86,5:86:3447:5:197:0,-9.28824,-292.162 0/0:56:56,0:56:2215:0:0:0,-16.8577,-199.521 0/1:9:5,4:5:197:4:148:-10.9701,0,-15.3939 dDocent_Contig_1059 80 . T C 222.253 . AB=0.25641;ABP=23.1103;AC=1;AF=0.125;AN=8;AO=14;CIGAR=1X;DP=146;DPB=146;DPRA=1.40476;EPP=33.4109;EPPR=289.645;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=535;QR=4942;RO=132;RPL=14;RPP=33.4109;RPPR=289.645;RPR=0;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=132;SRP=289.645;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:28:28,0:28:1040:0:0:0,-8.42884,-93.9015 0/1:39:29,10:29:1093:10:387:-23.4471,0,-86.9347 0/0:47:45,2:45:1663:2:75:0,-7.02831,-142.817 0/0:32:30,2:30:1146:2:73:0,-2.70226,-96.5072 dDocent_Contig_1060 23 . C T 3186.01 . AB=0.282851;ABP=186.908;AC=4;AF=0.5;AN=8;AO=127;CIGAR=1X;DP=449;DPB=449;DPRA=0;EPP=278.787;EPPR=702.224;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5091;QR=12895;RO=322;RPL=0;RPP=278.787;RPPR=702.224;RPR=127;RUN=1;SAF=127;SAP=278.787;SAR=0;SRF=322;SRP=702.224;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:163:121,42:121:4885:42:1689:-103.164,0,-390.458 0/1:152:110,42:110:4386:42:1687:-106.295,0,-348.921 0/1:89:63,26:63:2517:26:1025:-65.7492,0,-199.882 0/1:45:28,17:28:1107:17:690:-48.8816,0,-86.365 dDocent_Contig_1061 79 . T C 78.5383 . AB=0.16129;ABP=33.9012;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=88;DPB=88;DPRA=1.63158;EPP=13.8677;EPPR=183.243;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=197;QR=3207;RO=83;RPL=5;RPP=13.8677;RPPR=183.243;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=83;SRP=183.243;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:26,5:26:1020:5:197:-8.77464,0,-82.765 0/0:34:34,0:34:1333:0:0:0,-10.235,-120.244 0/0:14:14,0:14:518:0:0:0,-4.21442,-46.9439 0/0:9:9,0:9:336:0:0:0,-2.70927,-30.5788 dDocent_Contig_1062 65 . G A 656.065 . AB=0.409836;ABP=7.31765;AC=3;AF=0.375;AN=8;AO=25;CIGAR=1X;DP=100;DPB=100;DPRA=0.521368;EPP=57.2971;EPPR=165.871;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=965;QR=2788;RO=75;RPL=25;RPP=57.2971;RPPR=165.871;RPR=0;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=75;SRP=165.871;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:17,10:17:632:10:377:-26.1534,0,-49.0784 0/0:39:39,0:39:1428:0:0:0,-11.7402,-128.778 0/1:23:14,9:14:546:9:351:-25.0273,0,-42.561 0/1:11:5,6:5:182:6:237:-18.3923,0,-13.4218 dDocent_Contig_1063 15 . T C 2458.88 . AB=0.276074;ABP=144.995;AC=3;AF=0.375;AN=8;AO=90;CIGAR=1X1M1X;DP=326;DPB=326;DPRA=0;EPP=198.443;EPPR=363.475;GTI=0;LEN=1;MEANALT=2.25;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=5.55112e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3552;QR=6602;RO=166;RPL=0;RPP=198.443;RPPR=363.475;RPR=90;RUN=1;SAF=90;SAP=198.443;SAR=0;SRF=166;SRP=363.475;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:113:47,38,28:47:1886:38,28:1510,1083:-110.166,0,-143.968,-35.3827,-66.4757,-182.354 0|1:91:42,29,19:42:1663:29,19:1160,774:-82.9036,0,-128.127,-31.6918,-73.0008,-162.834 0|1:86:57,16,13:57:2256:16,13:622,523:-33.9395,0,-180.833,-7.99072,-142.546,-189.737 0|0:36:20,7,9:20:797:7,9:260,368:-24.3681,-9.13243,-72.6481,0,-44.3843,-62.9406 dDocent_Contig_1064 166 . G A 61.8295 . AB=0.117188;ABP=165.939;AC=1;AF=0.125;AN=8;AO=17;CIGAR=1X;DP=851;DPB=851;DPRA=0.960829;EPP=39.9253;EPPR=1807.5;GTI=0;LEN=1;MEANALT=1.5;MQM=40;MQMR=40.0722;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=592;QR=31137;RO=831;RPL=17;RPP=39.9253;RPPR=1807.5;RPR=0;RUN=1;SAF=0;SAP=39.9253;SAR=17;SRF=0;SRP=1807.5;SRR=831;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:258:258,0:258:9572:0:0:0,-77.6657,-805.749 0/0:289:286,2:286:10710:2:48:0,-82.6571,-896.8 0/0:176:174,0:174:6644:0:0:0,-52.3792,-557.424 0/1:128:113,15:113:4211:15:544:-7.4048,0,-315.234 dDocent_Contig_1065 7 . T G 8769.89 . AB=0.0967742;ABP=659.706;AC=0;AF=0;AN=8;AO=45;CIGAR=1X1M1X;DP=465;DPB=465;DPRA=0;EPP=100.727;EPPR=276.616;GTI=0;LEN=1;MEANALT=2.25;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1577;QR=4754;RO=126;RPL=0;RPP=100.727;RPPR=276.616;RPR=45;RUN=1;SAF=45;SAP=100.727;SAR=0;SRF=126;SRP=276.616;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:142:53,12,77:53:1978:12,77:422,2950:-226.174,-207.788,-366.113,0,-127.618,-138.779 0|0:183:33,30,119:33:1254:30,119:1042,4552:-363.622,-288.861,-382.671,0,-18.1723,-67.0381 0|0:78:27,1,50:27:1028:1,50:36,1918:-149.325,-154.516,-238.537,0,-81.4058,-69.291 0|0:62:13,2,47:13:494:2,47:77,1795:-143.357,-140.947,-180.859,0,-34.1865,-26.3611 dDocent_Contig_1066 28 . A G 368.064 . AB=0.139896;ABP=220.394;AC=2;AF=0.25;AN=8;AO=27;CIGAR=1X;DP=355;DPB=355;DPRA=1.19136;EPP=61.6401;EPPR=715.253;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.561;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.932927;PAO=0;PQA=0;PQR=0;PRO=0;QA=1074;QR=13102;RO=328;RPL=0;RPP=61.6401;RPPR=715.253;RPR=27;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=328;SRP=715.253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:122:122,0:122:4840:0:0:0,-36.7257,-434.858 0/1:129:114,15:114:4556:15:591:-14.6944,0,-371.14 0/1:64:52,12:52:2086:12:483:-24.5557,0,-168.53 0/0:40:40,0:40:1620:0:0:0,-12.0412,-145.591 dDocent_Contig_1067 38 . G C 292.472 . AB=0.0508475;ABP=106.394;AC=0;AF=0;AN=8;AO=4;CIGAR=1X3M3I3M1X2M1X;DP=294;DPB=295.091;DPRA=0.580645;EPP=11.6962;EPPR=327.111;GTI=0;LEN=1;MEANALT=2;MQM=35;MQMR=56.4254;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.891791;PAO=0;PQA=0;PQR=0;PRO=0;QA=157;QR=9887;RO=268;RPL=0;RPP=11.6962;RPPR=454.288;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=250;SRP=439.12;SRR=18;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:59:42,3,14:42:1547:3,14:117,523:-30.1681,-33.4555,-155.137,0,-113.219,-118.361 0|0:95:91,0,3:91:3390:0,3:0,118:0,-27.3937,-296.749,-17.6526,-287.042,-286.139 0|0:91:88,0,0:88:3223:0,0:0,0:0,-26.4906,-274.769,-26.4906,-274.769,-274.769 0|0:49:47,1,0:47:1727:1,0:40,0:0,-14.1793,-155.015,-14.1484,-155.316,-155.459 dDocent_Contig_1068 45 . A T 710.329 . AB=0.272727;ABP=62.2323;AC=3;AF=0.375;AN=8;AO=37;CIGAR=1X;DP=175;DPB=175;DPRA=0;EPP=83.3548;EPPR=302.673;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1299;QR=5225;RO=138;RPL=0;RPP=83.3548;RPPR=302.673;RPR=37;RUN=1;SAF=37;SAP=83.3548;SAR=0;SRF=138;SRP=302.673;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:38:26,12:26:952:12:415:-26.232,0,-74.5327 0/0:43:42,1:42:1587:1:35:0,-9.44566,-139.592 0/1:54:39,15:39:1497:15:545:-33.1286,0,-118.741 0/1:40:31,9:31:1189:9:304:-15.6388,0,-95.2616 dDocent_Contig_1069 129 . G T 124.035 . AB=0.12844;ABP=133.717;AC=1;AF=0.125;AN=8;AO=19;CIGAR=1X;DP=212;DPB=212;DPRA=0;EPP=44.2683;EPPR=422.104;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.6995;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.989637;PAO=0;PQA=0;PQR=0;PRO=0;QA=694;QR=7493;RO=193;RPL=0;RPP=44.2683;RPPR=422.104;RPR=19;RUN=1;SAF=0;SAP=44.2683;SAR=19;SRF=0;SRP=422.104;SRR=193;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:109:95,14:95:3719:14:509:-13.3244,0,-300.407 0/0:28:27,1:27:1058:1:36:0,-4.83056,-91.9196 0/0:40:38,2:38:1454:2:71:0,-5.2993,-124.384 0/0:35:33,2:33:1262:2:78:0,-3.13258,-106.454 dDocent_Contig_1070 18 . T C 1366.31 . AB=0.143906;ABP=753.061;AC=3;AF=0.375;AN=8;AO=120;CIGAR=1X;DP=942;DPB=942;DPRA=0;EPP=263.587;EPPR=1785.79;GTI=0;LEN=1;MEANALT=1.25;MQM=59.975;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.991667;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4682;QR=32695;RO=821;RPL=0;RPP=263.587;RPPR=1785.79;RPR=120;RUN=1;SAF=120;SAP=263.587;SAR=0;SRF=821;SRP=1785.79;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:298:270,27:270:10760:27:1068:-6.89042,0,-878.164 0/1:224:174,50:174:6974:50:1916:-105.21,0,-559.892 0/0:261:239,22:239:9452:22:853:0,-1.48972,-773.018 0/1:159:138,21:138:5509:21:845:-28.4974,0,-447.77 dDocent_Contig_1071 11 . G A 13494.1 . AB=0.745714;ABP=186.556;AC=5;AF=0.625;AN=8;AO=418;CIGAR=1X;DP=519;DPB=519;DPRA=0;EPP=910.686;EPPR=222.329;GTI=0;LEN=1;MEANALT=1;MQM=59.8278;MQMR=60;NS=4;NUMALT=1;ODDS=2.77556e-17;PAIRED=1;PAIREDR=0.891089;PAO=0;PQA=0;PQR=0;PRO=0;QA=16703;QR=4014;RO=101;RPL=0;RPP=910.686;RPPR=222.329;RPR=418;RUN=1;SAF=418;SAP=910.686;SAR=0;SRF=101;SRP=222.329;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:169:12,157:12:481:157:6302:-522.868,-7.23323,0 0/1:158:42,116:42:1656:116:4619:-367.855,0,-101.701 0/1:111:28,83:28:1118:83:3302:-263.702,0,-67.4866 0/1:81:19,62:19:759:62:2480:-198.951,0,-44.2488 dDocent_Contig_1073 16 . G A 5426.05 . AB=0.555556;ABP=11.6962;AC=4;AF=0.5;AN=8;AO=180;CIGAR=1X;DP=324;DPB=324;DPRA=0;EPP=393.875;EPPR=315.702;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=0.972222;PAO=0;PQA=0;PQR=0;PRO=0;QA=7164;QR=5715;RO=144;RPL=0;RPP=393.875;RPPR=315.702;RPR=180;RUN=1;SAF=180;SAP=393.875;SAR=0;SRF=144;SRP=315.702;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:130:49,81:49:1926:81:3207:-249.562,0,-134.405 0/1:76:34,42:34:1341:42:1683:-128.82,0,-98.074 0/1:74:24,50:24:970:50:1989:-156.934,0,-65.3235 0/1:44:37,7:37:1478:7:285:-12.7789,0,-120.017 dDocent_Contig_1074 82 . A T 153.521 . AB=0.230769;ABP=35.7494;AC=3;AF=0.375;AN=8;AO=12;CIGAR=1X;DP=61;DPB=61;DPRA=1.92593;EPP=29.068;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=378;QR=1640;RO=49;RPL=12;RPP=29.068;RPPR=109.412;RPR=0;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:13,6:13:450:6:179:-10.6847,0,-35.1113 0/1:15:12,3:12:397:3:96:-4.44221,0,-31.5342 0/1:18:15,3:15:485:3:103:-4.19143,0,-38.5406 0/0:9:9,0:9:308:0:0:0,-2.70927,-28.0523 dDocent_Contig_1075 17 . T C 2452.5 . AB=0.237363;ABP=275.618;AC=4;AF=0.5;AN=8;AO=108;CIGAR=1X;DP=455;DPB=455;DPRA=0;EPP=237.529;EPPR=756.511;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.5245;NS=4;NUMALT=1;ODDS=2.77556e-17;PAIRED=1;PAIREDR=0.971182;PAO=0;PQA=0;PQR=0;PRO=0;QA=4295;QR=13697;RO=347;RPL=0;RPP=237.529;RPPR=756.511;RPR=108;RUN=1;SAF=108;SAP=237.529;SAR=0;SRF=347;SRP=756.511;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:194:142,52:142:5588:52:2064:-127.55,0,-444.392 0/1:123:100,23:100:3971:23:914:-45.5388,0,-320.006 0/1:86:71,15:71:2796:15:602:-28.6297,0,-224.844 0/1:52:34,18:34:1342:18:715:-49.0213,0,-105.397 dDocent_Contig_1076 23 . G A 2036.62 . AB=0.0852018;ABP=336.278;AC=4;AF=0.5;AN=8;AO=19;CIGAR=1X1M;DP=223;DPB=223;DPRA=0;EPP=44.2683;EPPR=283.13;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=776;QR=5152;RO=129;RPL=0;RPP=44.2683;RPPR=283.13;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=129;SRP=283.13;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:80:55,21,4:55:2205:21,4:846,164:-53.1668,0,-175.33,-56.186,-168.115,-236.641 0|1:64:34,22,8:34:1360:22,8:887,327:-62.8733,0,-105.397,-46.1232,-85.0345,-155.74 0|1:45:27,15,3:27:1084:15,3:595,123:-40.8361,0,-84.7973,-38.8095,-79.1597,-127.23 0|1:34:13,17,4:13:503:17,4:682,162:-52.2754,0,-36.1762,-42.8297,-27.9311,-82.9269 dDocent_Contig_1078 25 . T C 86.5779 . AB=0.10989;ABP=123.3;AC=1;AF=0.125;AN=8;AO=10;CIGAR=1X;DP=266;DPB=266;DPRA=1.56;EPP=24.725;EPPR=556.736;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.992157;PAO=0;PQA=0;PQR=0;PRO=0;QA=408;QR=10200;RO=255;RPL=0;RPP=24.725;RPPR=556.736;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=255;SRP=556.736;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:91:80,10:80:3210:10:408:-9.57861,0,-261.458 0/0:101:101,0:101:4054:0:0:0,-30.404,-364.834 0/0:47:47,0:47:1867:0:0:0,-14.1484,-168.227 0/0:27:27,0:27:1069:0:0:0,-8.12781,-96.4992 dDocent_Contig_1079 93 . A G 696.501 . AB=0.231214;ABP=111.571;AC=3;AF=0.375;AN=8;AO=42;CIGAR=1X;DP=198;DPB=198;DPRA=0;EPP=94.2121;EPPR=341.76;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1444;QR=5336;RO=156;RPL=42;RPP=94.2121;RPPR=341.76;RPR=0;RUN=1;SAF=42;SAP=94.2121;SAR=0;SRF=156;SRP=341.76;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:80:68,12:68:2309:12:414:-13.5089,0,-183.986 0/1:78:52,26:52:1791:26:906:-58.3768,0,-137.99 0/0:25:23,2:23:783:2:59:0,-1.92174,-65.1765 0/1:15:13,2:13:453:2:65:-1.65784,0,-36.5865 dDocent_Contig_1080 198 . T C 111.779 . AB=0.148148;ABP=61.0771;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=162;DPB=162;DPRA=1.5;EPP=20.3821;EPPR=337.417;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=311;QR=5932;RO=154;RPL=8;RPP=20.3821;RPPR=337.417;RPR=0;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=337.417;SRR=154;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:54:46,8:46:1779:8:311:-12.0987,0,-144.107 0/0:54:54,0:54:2089:0:0:0,-16.2556,-188.236 0/0:21:21,0:21:802:0:0:0,-6.32163,-72.5031 0/0:33:33,0:33:1262:0:0:0,-9.93399,-113.87 dDocent_Contig_1082 177 . A T 627.428 . AB=0.5;ABP=3.0103;AC=2;AF=0.25;AN=8;AO=22;CIGAR=1X;DP=70;DPB=70;DPRA=1.69231;EPP=50.7827;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=863;QR=1910;RO=48;RPL=22;RPP=50.7827;RPPR=107.241;RPR=0;RUN=1;SAF=0;SAP=50.7827;SAR=22;SRF=0;SRP=107.241;SRR=48;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:17:17,0:17:675:0:0:0,-5.11751,-61.0797 0/1:37:16,21:16:639:21:824:-63.342,0,-46.7065 0/1:7:6,1:6:240:1:39:-1.78935,0,-19.8688 0/0:9:9,0:9:356:0:0:0,-2.70927,-32.4023 dDocent_Contig_1083 21 . T G 568.447 . AB=0.169082;ABP=199.901;AC=4;AF=0.5;AN=8;AO=35;CIGAR=1X2M3X;DP=207;DPB=207;DPRA=0;EPP=79.0118;EPPR=374.332;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.828571;PAIREDR=0.830409;PAO=0;PQA=0;PQR=0;PRO=0;QA=1366;QR=6702;RO=171;RPL=0;RPP=79.0118;RPPR=374.332;RPR=35;RUN=1;SAF=35;SAP=79.0118;SAR=0;SRF=171;SRP=374.332;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:82:69,13:69:2698:13:503:-20.9307,0,-218.286 0|1:53:39,13:39:1537:13:501:-29.4084,0,-122.559 0|1:39:33,6:33:1309:6:242:-10.4174,0,-106.344 0|1:33:30,3:30:1158:3:120:-1.25391,0,-94.5736 dDocent_Contig_1084 21 . G C 523.951 . AB=0.229358;ABP=72.358;AC=4;AF=0.5;AN=8;AO=25;CIGAR=1X;DP=109;DPB=109;DPRA=0;EPP=57.2971;EPPR=185.414;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=991;QR=3251;RO=84;RPL=0;RPP=57.2971;RPPR=185.414;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=84;SRP=185.414;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:31,5:31:1218:5:204:-7.90695,0,-99.0577 0/1:46:33,13:33:1254:13:504:-31.8546,0,-99.27 0/1:15:10,5:10:398:5:201:-13.9554,0,-31.6618 0/1:12:10,2:10:381:2:82:-4.16732,0,-31.0191 dDocent_Contig_1085 15 . C T 462.644 . AB=0.123626;ABP=450.882;AC=2;AF=0.25;AN=8;AO=48;CIGAR=1X;DP=727;DPB=727;DPRA=0.92228;EPP=107.241;EPPR=1477.44;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.997054;PAO=0;PQA=0;PQR=0;PRO=0;QA=1875;QR=27102;RO=679;RPL=0;RPP=107.241;RPPR=1477.44;RPR=48;RUN=1;SAF=48;SAP=107.241;SAR=0;SRF=679;SRP=1477.44;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:242:211,31:211:8436:31:1220:-37.2288,0,-685.91 0/0:193:193,0:193:7652:0:0:0,-58.0988,-688.286 0/0:170:167,3:167:6677:3:123:0,-39.7103,-589.17 0/1:122:108,14:108:4337:14:532:-11.4793,0,-353.546 dDocent_Contig_1086 89 . G A 6464.58 . AB=0.0872483;ABP=223.495;AC=0;AF=0;AN=8;AO=17;CIGAR=3X;DP=298;DPB=298;DPRA=0;EPP=39.9253;EPPR=89.8692;GTI=0;LEN=1;MEANALT=2.66667;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=597;QR=1310;RO=40;RPL=17;RPP=39.9253;RPPR=89.8692;RPR=0;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:74:19,10,45:19:614:10,45:350,1520:-117.478,-94.7197,-141.227,0,-21.0186,-35.9576 0|0:92:13,0,78:13:425:0,78:0,2648:-211.11,-215.024,-249.346,0,-34.5624,-11.082 0|0:75:8,3,64:8:271:3,64:108,2094:-166.69,-160.285,-181.356,0,-13.1399,-2.692 0|0:57:0,4,51:0:0:4,51:139,1724:-155.139,-143.837,-142.633,-15.3525,-3.96018,0 dDocent_Contig_1087 49 . C T 62.373 . AB=0.214286;ABP=12.937;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=65;DPB=65;DPRA=0.823529;EPP=9.52472;EPPR=129.096;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=2488;RO=62;RPL=0;RPP=9.52472;RPPR=129.096;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:11,3:11:438:3:122:-7.15807,0,-35.5598 0/0:22:22,0:22:888:0:0:0,-6.62266,-80.2285 0/0:23:23,0:23:929:0:0:0,-6.92369,-83.9123 0/0:6:6,0:6:233:0:0:0,-1.80618,-21.3367 dDocent_Contig_1088 37 . T C 32.9317 . AB=0.103448;ABP=82.2316;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=248;DPB=248;DPRA=0.915789;EPP=16.0391;EPPR=528.507;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=240;QR=9562;RO=242;RPL=0;RPP=16.0391;RPPR=528.507;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=242;SRP=528.507;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:84:84,0:84:3348:0:0:0,-25.2865,-301.368 0/0:85:85,0:85:3334:0:0:0,-25.5875,-300.132 0/1:58:52,6:52:2083:6:240:-4.5148,0,-170.193 0/0:21:21,0:21:797:0:0:0,-6.32163,-72.0448 dDocent_Contig_1090 59 . G A 11320.5 . AB=0.666667;ABP=135.47;AC=4;AF=0.5;AN=8;AO=366;CIGAR=1X;DP=549;DPB=549;DPRA=0;EPP=797.769;EPPR=400.39;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=2.77556e-17;PAIRED=0.989071;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=14474;QR=7259;RO=183;RPL=366;RPP=797.769;RPPR=400.39;RPR=0;RUN=1;SAF=366;SAP=797.769;SAR=0;SRF=183;SRP=400.39;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:219:78,141:78:3116:141:5604:-438.269,0,-214.593 0/1:116:40,76:40:1563:76:3018:-236.793,0,-105.99 0/1:130:32,98:32:1260:98:3846:-307.029,0,-74.5367 0/1:84:33,51:33:1320:51:2006:-155.448,0,-93.7741 dDocent_Contig_1091 37 . G A 131.725 . AB=0.166667;ABP=55.1256;AC=2;AF=0.25;AN=8;AO=11;CIGAR=1X;DP=113;DPB=113;DPRA=1.46032;EPP=26.8965;EPPR=224.5;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.818182;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=425;QR=4054;RO=102;RPL=0;RPP=26.8965;RPPR=224.5;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=102;SRP=224.5;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:38:36,2:36:1425:2:79:0,-3.9419,-121.005 0/1:26:21,5:21:835:5:199:-10.4607,0,-67.6356 0/1:28:24,4:24:957:4:147:-5.15548,0,-77.9994 0/0:21:21,0:21:837:0:0:0,-6.32163,-75.6419 dDocent_Contig_1092 19 . G T 335.586 . AB=0.277778;ABP=26.1727;AC=1;AF=0.125;AN=8;AO=15;CIGAR=1X;DP=146;DPB=146;DPRA=1.76087;EPP=35.5824;EPPR=287.473;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=560;QR=5202;RO=131;RPL=0;RPP=35.5824;RPPR=287.473;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=131;SRP=287.473;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:54:39,15:39:1547:15:560:-34.4794,0,-123.223 0/0:54:54,0:54:2133:0:0:0,-16.2556,-192.158 0/0:29:29,0:29:1162:0:0:0,-8.72987,-104.859 0/0:9:9,0:9:360:0:0:0,-2.70927,-32.764 dDocent_Contig_1093 209 . N G 236.22 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=6;CIGAR=1X;DP=6;DPB=6;DPRA=0;EPP=16.0391;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=244;QR=0;RO=0;RPL=6;RPP=16.0391;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1:0,1:0:0:1:39:-3.89656,-0.30103,0 1/1:2:0,2:0:0:2:82:-7.77968,-0.60206,0 1/1:3:0,3:0:0:3:123:-11.4648,-0.90309,0 ./.:.:.:.:.:.:.:. dDocent_Contig_1094 32 . G C 3937.31 . AB=0.300195;ABP=180.897;AC=4;AF=0.5;AN=8;AO=154;CIGAR=1X1M1X;DP=513;DPB=513;DPRA=0;EPP=337.417;EPPR=778.226;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=58.9552;NS=4;NUMALT=1;ODDS=0;PAIRED=0.987013;PAIREDR=0.929972;PAO=0;PQA=0;PQR=0;PRO=0;QA=6141;QR=13581;RO=357;RPL=0;RPP=337.417;RPPR=778.226;RPR=154;RUN=1;SAF=154;SAP=337.417;SAR=0;SRF=357;SRP=778.226;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:112:71,41:71:2743:41:1636:-113.758,0,-213.05 0|1:173:125,47:125:4755:47:1886:-117.757,0,-374.599 0|1:173:130,42:130:4942:42:1670:-98.5475,0,-392.456 0|1:55:31,24:31:1141:24:949:-69.1577,0,-86.4215 dDocent_Contig_1095 13 . T A 6540.58 . AB=0.0256798;ABP=1296.66;AC=0;AF=0;AN=8;AO=17;CIGAR=1X1M2X2M1X1M1X2M3X;DP=981;DPB=981;DPRA=0;EPP=39.9253;EPPR=1444.87;GTI=0;LEN=1;MEANALT=5;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=0.996988;PAO=0;PQA=0;PQR=0;PRO=0;QA=639;QR=25874;RO=664;RPL=0;RPP=39.9253;RPPR=1444.87;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=664;SRP=1444.87;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:302:188,1,109,0:188:7353:1,109,0:40,4210,0:-289.208,-342.506,-946.765,0,-601.319,-571.802,-345.801,-947.066,-604.614,-950.361 0|0:319:228,0,87,0:228:8874:0,87,0:0,3343,0:-205.872,-274.507,-1003.8,0,-729.378,-703.188,-274.507,-1003.8,-729.378,-1003.8 0|0:197:127,10,43,14:127:4935:10,43,14:367,1655,558:-97.661,-105.898,-508.406,0,-375.537,-392.586,-89.9346,-465.463,-359.577,-491.243 0|0:163:121,6,33,0:121:4712:6,33,0:232,1258,0:-66.8058,-84.1729,-469.644,0,-368.258,-377.379,-103.23,-471.45,-387.313,-490.506 dDocent_Contig_1097 18 . G A 12561 . AB=0.72844;ABP=250.044;AC=4;AF=0.5;AN=8;AO=397;CIGAR=1X;DP=545;DPB=545;DPRA=0;EPP=865.085;EPPR=274.386;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=2.77556e-17;PAIRED=1;PAIREDR=0.959459;PAO=0;PQA=0;PQR=0;PRO=0;QA=15841;QR=5898;RO=148;RPL=0;RPP=865.085;RPPR=324.388;RPR=397;RUN=1;SAF=397;SAP=865.085;SAR=0;SRF=142;SRP=274.386;SRR=6;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:131:31,100:31:1231:100:3976:-318.402,0,-71.6248 0/1:198:41,157:41:1635:157:6243:-502.024,0,-87.7765 0/1:119:56,63:56:2224:63:2522:-191.296,0,-164.51 0/1:97:20,77:20:808:77:3100:-249.869,0,-43.8351 dDocent_Contig_1098 40 . G C 48.0639 . AB=0.0982143;ABP=160.054;AC=2;AF=0.25;AN=8;AO=17;CIGAR=1X;DP=327;DPB=327;DPRA=4.85714;EPP=39.9253;EPPR=673.995;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=682;QR=11983;RO=309;RPL=0;RPP=39.9253;RPPR=673.995;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=309;SRP=673.995;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:194:188,6:188:7329:6:235:0,-36.88,-637.812 0/1:80:71,8:71:2707:8:326:-5.52811,0,-219.6 0/1:32:29,3:29:1136:3:121:-1.64724,0,-92.8951 0/0:21:21,0:21:811:0:0:0,-6.32163,-73.3088 dDocent_Contig_1101 159 . C G 123.04 . AB=0.128205;ABP=96.662;AC=2;AF=0.25;AN=8;AO=10;CIGAR=1X;DP=170;DPB=170;DPRA=0.847826;EPP=24.725;EPPR=324.877;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=407;QR=6384;RO=160;RPL=10;RPP=24.725;RPPR=324.877;RPR=0;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=350.446;SRR=160;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:63:63,0:63:2511:0:0:0,-18.9649,-226.112 0/1:49:45,4:45:1791:4:164:-0.399429,0,-146.655 0/1:29:23,6:23:923:6:243:-13.5177,0,-74.6455 0/0:29:29,0:29:1159:0:0:0,-8.72987,-104.586 dDocent_Contig_1102 107 . N C 52.8643 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=19;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=93;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:58:-3.18539,-0.60206,0 1/1:1:0,1:0:0:1:35:-1.79155,-0.30103,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_1103 71 . A G 68.3553 . AB=0.123288;ABP=92.9925;AC=1;AF=0.125;AN=8;AO=10;CIGAR=1X;DP=395;DPB=395;DPRA=1.30994;EPP=24.725;EPPR=839.027;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=0.9;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=371;QR=15266;RO=385;RPL=10;RPP=24.725;RPPR=839.027;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=385;SRP=839.027;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:151:150,1:150:5983:1:41:0,-41.361,-534.16 0/0:114:114,0:114:4518:0:0:0,-34.3174,-406.574 0/1:73:64,9:64:2536:9:330:-8.05738,0,-206.411 0/0:57:57,0:57:2229:0:0:0,-17.1587,-200.778 dDocent_Contig_1104 27 . C T 4059.25 . AB=0.557252;ABP=10.4696;AC=4;AF=0.5;AN=8;AO=146;CIGAR=1X;DP=262;DPB=262;DPRA=0;EPP=320.045;EPPR=252.73;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5433;QR=4598;RO=115;RPL=0;RPP=320.045;RPPR=252.73;RPR=146;RUN=1;SAF=146;SAP=320.045;SAR=0;SRF=115;SRP=252.73;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:76:29,46:29:1163:46:1644:-125.529,0,-82.2557 0/1:98:39,59:39:1559:59:2204:-169.075,0,-111.043 0/1:59:32,27:32:1283:27:1035:-75.6938,0,-97.9735 0/1:29:15,14:15:593:14:550:-41.1153,0,-44.9736 dDocent_Contig_1105 63 . G T 216.044 . AB=0.218182;ABP=40.9518;AC=3;AF=0.375;AN=8;AO=12;CIGAR=1X;DP=78;DPB=78;DPRA=0.797101;EPP=29.068;EPPR=146.327;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.5;PAIREDR=0.909091;PAO=0;PQA=0;PQR=0;PRO=0;QA=456;QR=2501;RO=66;RPL=12;RPP=29.068;RPPR=146.327;RPR=0;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=66;SRP=146.327;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:16,6:16:620:6:237:-15.0808,0,-49.512 0/0:23:23,0:23:830:0:0:0,-6.92369,-75.0021 0/1:12:9,3:9:348:3:100:-5.71627,0,-28.066 0/1:21:18,3:18:703:3:119:-4.77376,0,-57.2782 dDocent_Contig_1106 1 . N G 73.1239 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=4.89285;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=77;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:77:-7.30914,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_1107 11 . C G 32.8302 . AB=0.106383;ABP=66.2602;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=122;DPB=122;DPRA=1.88;EPP=13.8677;EPPR=257.073;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=203;QR=4663;RO=117;RPL=0;RPP=13.8677;RPPR=257.073;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=117;SRP=257.073;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:25:25,0:25:1003:0:0:0,-7.52575,-90.5686 0/1:47:42,5:42:1695:5:203:-4.50465,0,-138.623 0/0:34:34,0:34:1341:0:0:0,-10.235,-120.956 0/0:16:16,0:16:624:0:0:0,-4.81648,-56.4919 dDocent_Contig_1108 98 . N A 6378.32 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=204;CIGAR=1X;DP=205;DPB=205;DPRA=0;EPP=445.991;EPPR=0;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=7071;QR=0;RO=0;RPL=204;RPP=445.991;RPPR=0;RPR=0;RUN=1;SAF=204;SAP=445.991;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:73:0,73:0:0:73:2534:-228.321,-21.9752,0 1/1:62:0,62:0:0:62:2133:-192.245,-18.6639,0 1/1:55:0,54:0:0:54:1880:-169.173,-16.2556,0 1/1:15:0,15:0:0:15:524:-47.4909,-4.51545,0 dDocent_Contig_1110 107 . N C 152.003 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=7;CIGAR=1X;DP=8;DPB=8;DPRA=0;EPP=18.2106;EPPR=0;GTI=0;LEN=1;MEANALT=1.25;MQM=40;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=155;QR=0;RO=0;RPL=0;RPP=18.2106;RPPR=0;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1:0,1:0:0:1:34:-3.30271,-0.30103,0 1/1:1:0,1:0:0:1:29:-2.86684,-0.30103,0 1/1:5:0,4:0:0:4:85:-7.61088,-1.20412,0 1/1:1:0,1:0:0:1:7:-0.699826,-0.30103,0 dDocent_Contig_1111 14 . A C 561.61 . AB=0.25;ABP=57.2971;AC=4;AF=0.5;AN=8;AO=25;CIGAR=1X;DP=100;DPB=100;DPRA=0;EPP=57.2971;EPPR=163.699;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.88;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1004;QR=2913;RO=74;RPL=0;RPP=57.2971;RPPR=163.699;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=74;SRP=163.699;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:26,4:26:1028:4:164:-6.119,0,-83.7837 0/1:22:12,10:12:487:10:403:-30.0068,0,-37.5584 0/1:31:25,5:25:974:5:195:-8.48482,0,-78.5185 0/1:17:11,6:11:424:6:242:-17.0398,0,-33.3896 dDocent_Contig_1113 8 . G A 378.713 . AB=0.22619;ABP=57.7107;AC=2;AF=0.25;AN=8;AO=22;CIGAR=1X;DP=131;DPB=131;DPRA=2.78571;EPP=50.7827;EPPR=239.701;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=822;QR=4196;RO=109;RPL=0;RPP=50.7827;RPPR=239.701;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=109;SRP=239.701;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:54:47,7:47:1814:7:268:-8.22778,0,-147.255 0/0:14:14,0:14:538:0:0:0,-4.21442,-48.765 0/0:33:30,3:30:1159:3:101:0,-0.513817,-95.188 0/1:30:18,12:18:685:12:453:-32.0862,0,-52.9516 dDocent_Contig_1114 40 . T C 1540.94 . AB=0.416667;ABP=10.9724;AC=4;AF=0.5;AN=8;AO=55;CIGAR=1X;DP=132;DPB=132;DPRA=0;EPP=122.441;EPPR=168.042;GTI=0;LEN=1;MEANALT=1.25;MQM=58.9091;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=0.872727;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2203;QR=3054;RO=76;RPL=0;RPP=122.441;RPPR=168.042;RPR=55;RUN=1;SAF=55;SAP=122.441;SAR=0;SRF=76;SRP=168.042;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:53:33,20:33:1329:20:810:-57.1765,0,-103.911 0/1:44:32,11:32:1282:11:434:-25.9852,0,-102.287 0/1:23:6,17:6:244:17:675:-54.1007,0,-15.4151 0/1:12:5,7:5:199:7:284:-22.3211,0,-14.6757 dDocent_Contig_1115 98 . N A 64.6118 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=4.89285;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=68;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:68:-6.45793,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_1116 10 . A G 164.322 . AB=0.185185;ABP=49.4959;AC=1;AF=0.125;AN=8;AO=12;CIGAR=1X;DP=183;DPB=183;DPRA=0.848485;EPP=29.068;EPPR=374.332;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.994152;PAO=0;PQA=0;PQR=0;PRO=0;QA=454;QR=6721;RO=171;RPL=0;RPP=29.068;RPPR=374.332;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=171;SRP=374.332;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:57:57,0:57:2241:0:0:0,-17.1587,-201.882 0/0:42:42,0:42:1642:0:0:0,-12.6433,-148.029 0/1:54:44,10:44:1732:10:373:-17.6539,0,-139.857 0/0:30:28,2:28:1106:2:81:0,-1.34517,-92.1478 dDocent_Contig_1117 9 . C T 782.434 . AB=0.197183;ABP=172.66;AC=1;AF=0.125;AN=8;AO=72;CIGAR=1X;DP=668;DPB=668;DPRA=0;EPP=159.356;EPPR=1288.52;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.989865;PAO=0;PQA=0;PQR=0;PRO=0;QA=2724;QR=22772;RO=592;RPL=0;RPP=159.356;RPPR=1288.52;RPR=72;RUN=1;SAF=72;SAP=159.356;SAR=0;SRF=592;SRP=1288.52;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:213:171,42:171:6551:42:1589:-79.1642,0,-525.375 0/0:252:233,19:233:8984:19:715:0,-11.1783,-743.593 0/0:101:96,5:96:3701:5:195:0,-12.4798,-315.277 0/0:102:92,6:92:3536:6:225:0,-9.26212,-297.753 dDocent_Contig_1118 18 . C A 128.814 . AB=0.175;ABP=39.7082;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=149;DPB=149;DPRA=1.10092;EPP=18.2106;EPPR=311.359;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.978873;PAO=0;PQA=0;PQR=0;PRO=0;QA=283;QR=5704;RO=142;RPL=0;RPP=18.2106;RPPR=311.359;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=142;SRP=311.359;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:40:33,7:33:1318:7:283:-13.8022,0,-106.839 0/0:28:28,0:28:1133:0:0:0,-8.42884,-102.248 0/0:44:44,0:44:1775:0:0:0,-13.2453,-159.964 0/0:37:37,0:37:1478:0:0:0,-11.1381,-133.264 dDocent_Contig_1119 148 . C T 1197.73 . AB=0.236842;ABP=140.156;AC=4;AF=0.5;AN=8;AO=54;CIGAR=1X3M;DP=228;DPB=228;DPRA=0;EPP=120.27;EPPR=369.989;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2134;QR=6620;RO=169;RPL=0;RPP=120.27;RPPR=369.989;RPR=54;RUN=1;SAF=0;SAP=120.27;SAR=54;SRF=0;SRP=369.989;SRR=169;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:57:46,1,10:46:1791:1,10:40,396:-18.738,-29.2899,-176.166,0,-143.877,-144.162 0|1:109:72,0,35:72:2872:0,35:0,1376:-91.6445,-113.319,-349.847,0,-236.678,-226.142 0|1:45:40,0,5:40:1550:0,5:0,201:-4.92417,-16.9654,-144.267,0,-127.701,-126.196 0|1:17:11,2,4:11:407:2,4:81,161:-9.95576,-6.5871,-39.2428,0,-26.5675,-32.0479 dDocent_Contig_1120 1 . N G 233.445 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=6;CIGAR=1X;DP=6;DPB=6;DPRA=0;EPP=16.0391;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=241;QR=0;RO=0;RPL=0;RPP=16.0391;RPPR=0;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:1:0,1:0:0:1:39:-3.89656,-0.30103,0 1/1:3:0,3:0:0:3:120:-11.1873,-0.90309,0 1/1:2:0,2:0:0:2:82:-7.77968,-0.60206,0 dDocent_Contig_1122 182 . G A 102.284 . AB=0.125;ABP=90.9549;AC=1;AF=0.125;AN=8;AO=15;CIGAR=1X;DP=250;DPB=250;DPRA=1.71739;EPP=35.5824;EPPR=513.306;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.987234;PAO=0;PQA=0;PQR=0;PRO=0;QA=602;QR=9365;RO=235;RPL=15;RPP=35.5824;RPPR=513.306;RPR=0;RUN=1;SAF=0;SAP=35.5824;SAR=15;SRF=0;SRP=513.306;SRR=235;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:86:80,6:80:3184:6:238:0,-4.0948,-264.837 0/0:52:52,0:52:2095:0:0:0,-15.6536,-188.727 0/0:40:40,0:40:1571:0:0:0,-12.0412,-141.622 0/1:72:63,9:63:2515:9:364:-11.4502,0,-204.816 dDocent_Contig_1123 11 . A G 3158.89 . AB=0.285047;ABP=174.78;AC=3;AF=0.375;AN=8;AO=125;CIGAR=3M1X;DP=515;DPB=515;DPRA=0;EPP=274.444;EPPR=739.139;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=4;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4971;QR=12922;RO=339;RPL=0;RPP=274.444;RPPR=739.139;RPR=125;RUN=1;SAF=125;SAP=274.444;SAR=0;SRF=339;SRP=739.139;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:192:140,16,0,5,31:140:5358:16,0,5,31:617,0,194,1224:-58.568,-50.0492,-484.913,-100.712,-489.729,-540.395,-84.7725,-473.789,-524.455,-522.95,0,-389.02,-439.686,-423.746,-430.354 0|1:157:73,7,0,0,77:73:2769:7,0,0,77:261,0,0,3060:-229.965,-230.577,-455.508,-251.94,-457.616,-478.98,-251.94,-457.616,-478.98,-478.98,0,-205.689,-227.053,-227.053,-203.874 0|1:79:51,9,0,5,14:51:1940:9,0,5,14:345,0,191,566:-31.323,-18.3672,-174.759,-46.6756,-177.469,-205.782,-31.0064,-161.797,-190.11,-188.605,0,-130.799,-159.113,-143.441,-154.898 0|0:87:75,2,6,0,3:75:2855:2,6,0,3:74,232,0,121:0,-16.5226,-250.111,-3.49918,-231.656,-235.903,-22.5772,-250.713,-237.709,-256.766,-12.5903,-240.738,-227.734,-246.791,-245.888 dDocent_Contig_1124 24 . G A 52.9106 . AB=0.101124;ABP=126.003;AC=1;AF=0.125;AN=8;AO=10;CIGAR=1X;DP=444;DPB=444;DPRA=0.460526;EPP=24.725;EPPR=945.429;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=405;QR=17337;RO=434;RPL=0;RPP=24.725;RPPR=945.429;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=434;SRP=945.429;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:168:168,0:168:6680:0:0:0,-50.573,-600.902 0/0:136:136,0:136:5461:0:0:0,-40.9401,-491.31 0/1:89:80,9:80:3194:9:366:-6.51291,0,-260.727 0/0:51:50,1:50:2002:1:39:0,-11.456,-176.469 dDocent_Contig_1125 22 . G A 1938.62 . AB=0.492754;ABP=3.07324;AC=4;AF=0.5;AN=8;AO=68;CIGAR=1X;DP=138;DPB=138;DPRA=0;EPP=150.67;EPPR=155.013;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2662;QR=2783;RO=70;RPL=0;RPP=150.67;RPPR=155.013;RPR=68;RUN=1;SAF=68;SAP=150.67;SAR=0;SRF=70;SRP=155.013;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:46:33,13:33:1306:13:523:-33.5696,0,-103.961 0/1:45:16,29:16:635:29:1135:-88.8884,0,-43.9356 0/1:30:15,15:15:607:15:581:-43.5925,0,-45.9375 0/1:17:6,11:6:235:11:423:-33.3008,0,-16.3998 dDocent_Contig_1126 16 . T G 11383.2 . AB=0.548905;ABP=17.2406;AC=4;AF=0.5;AN=8;AO=376;CIGAR=1X;DP=685;DPB=685;DPRA=0;EPP=819.484;EPPR=673.995;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.5081;NS=4;NUMALT=1;ODDS=0;PAIRED=0.99734;PAIREDR=0.97411;PAO=0;PQA=0;PQR=0;PRO=0;QA=15000;QR=12346;RO=309;RPL=0;RPP=819.484;RPPR=673.995;RPR=376;RUN=1;SAF=376;SAP=819.484;SAR=0;SRF=309;SRP=673.995;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:244:106,138:106:4213:138:5532:-424.24,0,-305.667 0/1:263:110,153:110:4460:153:6096:-469.229,0,-322.138 0/1:97:43,54:43:1694:54:2109:-160.787,0,-123.483 0/1:81:50,31:50:1979:31:1263:-89.5497,0,-151.783 dDocent_Contig_1127 44 . G A 239.342 . AB=0.170732;ABP=80.23;AC=1;AF=0.125;AN=8;AO=19;CIGAR=1X;DP=295;DPB=295;DPRA=0.724014;EPP=44.2683;EPPR=602.337;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=751;QR=10772;RO=276;RPL=0;RPP=44.2683;RPPR=602.337;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=276;SRP=602.337;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:93:93,0:93:3624:0:0:0,-27.9958,-326.196 0/0:81:78,3:78:3041:3:120:0,-13.1957,-262.591 0/1:82:68,14:68:2635:14:550:-25.156,0,-212.607 0/0:39:37,2:37:1472:2:81:0,-4.05444,-125.047 dDocent_Contig_1128 18 . A G 262.537 . AB=0.266667;ABP=24.2907;AC=3;AF=0.375;AN=8;AO=12;CIGAR=2X;DP=63;DPB=63;DPRA=0.833333;EPP=29.068;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=461;QR=2024;RO=51;RPL=0;RPP=29.068;RPPR=113.755;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:16:10,6:10:395:6:229:-16.158,0,-31.0894 0|0:18:18,0:18:708:0:0:0,-5.41854,-64.0456 0|1:17:12,5:12:474:5:192:-12.5316,0,-37.8931 0|1:12:11,1:11:447:1:40:-0.383319,0,-36.9737 dDocent_Contig_1129 61 . C A 110.208 . AB=0.114286;ABP=138.696;AC=1;AF=0.125;AN=8;AO=12;CIGAR=1X;DP=257;DPB=257;DPRA=2.07237;EPP=29.068;EPPR=535.021;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=480;QR=9686;RO=245;RPL=12;RPP=29.068;RPPR=535.021;RPR=0;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=245;SRP=535.021;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:105:93,12:93:3713:12:480:-11.9416,0,-302.578 0/0:86:86,0:86:3347:0:0:0,-25.8886,-301.295 0/0:40:40,0:40:1579:0:0:0,-12.0412,-142.347 0/0:26:26,0:26:1047:0:0:0,-7.82678,-94.5217 dDocent_Contig_1132 106 . N T 223.079 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=8;CIGAR=2X;DP=8;DPB=8;DPRA=0;EPP=20.3821;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=238;QR=0;RO=0;RPL=0;RPP=20.3821;RPPR=0;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:7:0,7:0:0:7:209:-19.1036,-2.10721,0 1|1:1:0,1:0:0:1:29:-2.89966,-0.30103,0 .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. dDocent_Contig_1133 14 . C A 2498.32 . AB=0.226852;ABP=142.99;AC=1;AF=0.125;AN=8;AO=49;CIGAR=5M1X3M1X;DP=216;DPB=216.5;DPRA=0;EPP=109.412;EPPR=183.243;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1943;QR=3274;RO=83;RPL=0;RPP=109.412;RPPR=183.243;RPR=49;RUN=1;SAF=49;SAP=109.412;SAR=0;SRF=83;SRP=183.243;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:105:45,0,19,41:45:1769:0,19,41:0,762,1616:-119.387,-132.933,-278.442,-70.1473,-215.657,-209.937,0,-145.505,-82.7189,-133.162 0|0:79:31,5,16,26:31:1225:5,16,26:190,626,1031:-75.5246,-69.2756,-168.579,-33.3927,-118.621,-129.386,0,-85.2313,-49.3484,-92.9857 0|0:19:6,0,5,8:6:240:0,5,8:0,196,320:-24.557,-26.3632,-46.1346,-10.2478,-30.0183,-28.5131,0,-19.7748,-3.65999,-17.3666 1|0:13:1,0,9,3:1:40:0,9,3:0,359,120:-35.8537,-36.1547,-39.4499,-6.58957,-9.88466,-7.17539,-26.2698,-29.565,0,-28.6619 dDocent_Contig_1135 14 . A T 2890.81 . AB=0.671429;ABP=38.7465;AC=4;AF=0.5;AN=8;AO=94;CIGAR=1X;DP=140;DPB=140;DPRA=0;EPP=207.129;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3728;QR=1855;RO=46;RPL=0;RPP=207.129;RPPR=102.898;RPR=94;RUN=1;SAF=94;SAP=207.129;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:43:17,26:17:681:26:1001:-77.4236,0,-48.6741 0/1:38:10,28:10:402:28:1108:-88.5665,0,-25.0984 0/1:31:14,17:14:570:17:686:-52.7372,0,-42.31 0/1:28:5,23:5:202:23:933:-75.8427,0,-10.133 dDocent_Contig_1136 32 . T A 360.787 . AB=0.190909;ABP=94.2911;AC=1;AF=0.125;AN=8;AO=35;CIGAR=2X;DP=519;DPB=519;DPRA=0.672481;EPP=79.0118;EPPR=1051.83;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1308;QR=19060;RO=483;RPL=0;RPP=79.0118;RPPR=1051.83;RPR=35;RUN=1;SAF=35;SAP=79.0118;SAR=0;SRF=483;SRP=1051.83;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:172:172,0:172:6728:0:0:0,-51.7772,-605.298 0|0:151:141,10:141:5598:10:372:0,-11.6309,-469.852 0|1:110:88,21:88:3483:21:780:-37.3006,0,-280.319 0|0:86:82,4:82:3251:4:156:0,-11.4716,-278.251 dDocent_Contig_1137 10 . T C 185.5 . AB=0.178571;ABP=53.2644;AC=1;AF=0.125;AN=8;AO=14;CIGAR=1X;DP=396;DPB=396;DPRA=0.558559;EPP=33.4109;EPPR=830.341;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=567;QR=13714;RO=381;RPL=0;RPP=33.4109;RPPR=830.341;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=381;SRP=830.341;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:115:111,3:111:4031:3:123:0,-23.03,-351.551 0/0:148:148,0:148:5312:0:0:0,-44.5524,-478.161 0/0:77:76,1:76:2756:1:41:0,-19.0847,-244.16 0/1:56:46,10:46:1615:10:403:-19.7719,0,-128.759 dDocent_Contig_1138 107 . N C 131.251 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=135;QR=0;RO=0;RPL=0;RPP=11.6962;RPPR=0;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:66:-6.26818,-0.60206,0 1/1:2:0,2:0:0:2:69:-6.55266,-0.60206,0 dDocent_Contig_1139 9 . G A 10006.7 . AB=0.624088;ABP=76.3015;AC=4;AF=0.5;AN=8;AO=342;CIGAR=1X;DP=548;DPB=548;DPRA=0;EPP=745.654;EPPR=450.334;GTI=0;LEN=1;MEANALT=1;MQM=59.2368;MQMR=60;NS=4;NUMALT=1;ODDS=2.77556e-17;PAIRED=0.00584795;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=13009;QR=7933;RO=206;RPL=0;RPP=745.654;RPPR=450.334;RPR=342;RUN=1;SAF=342;SAP=745.654;SAR=0;SRF=206;SRP=450.334;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:170:41,129:41:1585:129:4890:-388.886,0,-91.7429 0/1:183:71,112:71:2742:112:4255:-327.813,0,-191.872 0/1:113:66,47:66:2542:47:1797:-127.913,0,-194.957 0/1:82:28,54:28:1064:54:2067:-161.55,0,-71.3804 dDocent_Contig_1140 48 . G A 469.102 . AB=0.131498;ABP=388.702;AC=2;AF=0.25;AN=8;AO=58;CIGAR=1X;DP=754;DPB=754;DPRA=0;EPP=128.956;EPPR=1362.05;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=2.77556e-17;PAIRED=1;PAIREDR=0.992816;PAO=0;PQA=0;PQR=0;PRO=0;QA=2166;QR=25651;RO=696;RPL=58;RPP=128.956;RPPR=1362.05;RPR=0;RUN=1;SAF=58;SAP=128.956;SAR=0;SRF=696;SRP=1514.36;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:252:221,31:221:8124:31:1183:-30.9068,0,-655.183 0/0:240:229,11:229:8470:11:391:0,-36.7237,-726.617 0/0:187:183,4:183:6738:4:140:0,-43.3522,-593.44 0/1:75:63,12:63:2319:12:452:-18.447,0,-186.364 dDocent_Contig_1141 207 . T C 529.018 . AB=0.254386;ABP=62.7448;AC=3;AF=0.375;AN=8;AO=31;CIGAR=1X;DP=146;DPB=146;DPRA=0;EPP=4.76149;EPPR=252.73;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1060;QR=4444;RO=115;RPL=18;RPP=4.76149;RPPR=252.73;RPR=13;RUN=1;SAF=0;SAP=70.3259;SAR=31;SRF=0;SRP=252.73;SRR=115;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:32:30,2:30:1177:2:58:0,-4.12559,-100.704 0/1:56:43,13:43:1657:13:463:-25.1366,0,-132.507 0/1:42:29,13:29:1101:13:427:-26.103,0,-86.7308 0/1:16:13,3:13:509:3:112:-5.62874,0,-41.3331 dDocent_Contig_1142 67 . G A 245.426 . AB=0.26087;ABP=25.858;AC=1;AF=0.125;AN=8;AO=12;CIGAR=1X;DP=126;DPB=126;DPRA=1.725;EPP=29.068;EPPR=250.558;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=433;QR=3997;RO=114;RPL=12;RPP=29.068;RPPR=250.558;RPR=0;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=114;SRP=250.558;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:46:34,12:34:1225:12:433:-25.4634,0,-96.7047 0/0:57:57,0:57:1982:0:0:0,-17.1587,-178.638 0/0:12:12,0:12:410:0:0:0,-3.61236,-37.2253 0/0:11:11,0:11:380:0:0:0,-3.31133,-34.5299 dDocent_Contig_1144 209 . N G 289.685 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=9;CIGAR=1X;DP=9;DPB=9;DPRA=0;EPP=22.5536;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=311;QR=0;RO=0;RPL=9;RPP=22.5536;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:6:0,6:0:0:6:202:-18.5018,-1.80618,0 1/1:3:0,3:0:0:3:109:-10.1647,-0.90309,0 ./.:.:.:.:.:.:.:. dDocent_Contig_1145 21 . C T 453.482 . AB=0.19469;ABP=94.5004;AC=1;AF=0.125;AN=8;AO=25;CIGAR=1X;DP=479;DPB=479;DPRA=0.704626;EPP=57.2971;EPPR=988.859;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=995;QR=18172;RO=454;RPL=0;RPP=57.2971;RPPR=988.859;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=454;SRP=988.859;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:149:149,0:149:5981:0:0:0,-44.8535,-538.051 0/1:113:91,22:91:3655:22:892:-46.57,0,-294.941 0/0:132:132,0:132:5254:0:0:0,-39.736,-472.703 0/0:85:82,3:82:3282:3:103:0,-15.9814,-285.832 dDocent_Contig_1146 14 . T G 496.926 . AB=0.193798;ABP=108.066;AC=2;AF=0.25;AN=8;AO=27;CIGAR=1X;DP=200;DPB=200;DPRA=1.96552;EPP=61.6401;EPPR=378.675;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.930636;PAO=0;PQA=0;PQR=0;PRO=0;QA=1080;QR=6882;RO=173;RPL=0;RPP=61.6401;RPPR=378.675;RPR=27;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=173;SRP=378.675;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:74:59,15:59:2362:15:597:-31.7925,0,-190.465 0/1:55:45,10:45:1778:10:406:-20.3438,0,-143.683 0/0:42:40,2:40:1582:2:77:0,-5.33506,-135.312 0/0:29:29,0:29:1160:0:0:0,-8.72987,-104.684 dDocent_Contig_1148 19 . T A 1869.41 . AB=0.290698;ABP=101.181;AC=4;AF=0.5;AN=8;AO=75;CIGAR=1X3M1X;DP=258;DPB=258;DPRA=0;EPP=165.871;EPPR=396.047;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2978;QR=7121;RO=181;RPL=0;RPP=165.871;RPPR=396.047;RPR=75;RUN=1;SAF=75;SAP=165.871;SAR=0;SRF=181;SRP=396.047;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:94:64,28:64:2531:28:1118:-72.8255,0,-199.863 0|1:67:61,6:61:2396:6:231:-0.985995,0,-195.638 0|1:74:40,34:40:1565:34:1346:-99.1316,0,-118.821 0|1:23:16,7:16:629:7:283:-18.9199,0,-50.0191 dDocent_Contig_1150 50 . C T 785.943 . AB=0.361446;ABP=16.8502;AC=3;AF=0.375;AN=8;AO=30;CIGAR=1X;DP=108;DPB=108;DPRA=1.10667;EPP=68.1545;EPPR=172.385;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1183;QR=3047;RO=78;RPL=30;RPP=68.1545;RPPR=172.385;RPR=0;RUN=1;SAF=30;SAP=68.1545;SAR=0;SRF=78;SRP=172.385;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:25:25,0:25:994:0:0:0,-7.52575,-89.7608 0/1:26:22,4:22:834:4:157:-6.68151,0,-67.5461 0/1:35:13,22:13:507:22:865:-67.6267,0,-35.4372 0/1:22:18,4:18:712:4:161:-8.25261,0,-57.7831 dDocent_Contig_1151 199 . C G 1063.18 . AB=0.198606;ABP=229.456;AC=4;AF=0.5;AN=8;AO=57;CIGAR=1X;DP=287;DPB=287;DPRA=0;EPP=126.784;EPPR=502.449;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2187;QR=8699;RO=230;RPL=57;RPP=126.784;RPPR=502.449;RPR=0;RUN=1;SAF=0;SAP=126.784;SAR=57;SRF=0;SRP=502.449;SRR=230;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:94:67,27:67:2534:27:1039:-65.5213,0,-199.959 0/1:94:84,10:84:3152:10:378:-6.07555,0,-255.543 0/1:52:42,10:42:1593:10:386:-19.4435,0,-127.983 0/1:47:37,10:37:1420:10:384:-20.7671,0,-113.929 dDocent_Contig_1152 92 . C T 368.115 . AB=0.290323;ABP=26.6864;AC=2;AF=0.25;AN=8;AO=21;CIGAR=1X;DP=136;DPB=136;DPRA=0.891892;EPP=48.6112;EPPR=252.73;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=729;QR=3861;RO=115;RPL=21;RPP=48.6112;RPPR=252.73;RPR=0;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=115;SRP=252.73;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:19,2:19:643:2:70:-0.325766,0,-51.8666 0/1:41:25,16:25:847:16:556:-38.0264,0,-64.2001 0/0:37:37,0:37:1229:0:0:0,-11.1381,-110.905 0/0:37:34,3:34:1142:3:103:0,-1.52809,-93.4725 dDocent_Contig_1153 67 . C A 61.9188 . AB=0.25;ABP=9.52472;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=49;DPB=49;DPRA=0.972973;EPP=9.52472;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.934783;PAO=0;PQA=0;PQR=0;PRO=0;QA=115;QR=1738;RO=46;RPL=3;RPP=9.52472;RPPR=102.898;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:9,3:9:344:3:115:-7.11267,0,-27.7054 0/0:13:13,0:13:499:0:0:0,-3.91339,-45.2559 0/0:7:7,0:7:272:0:0:0,-2.10721,-24.8472 0/0:17:17,0:17:623:0:0:0,-5.11751,-56.3929 dDocent_Contig_1154 15 . T A 257.096 . AB=0.210526;ABP=44.4969;AC=1;AF=0.125;AN=8;AO=15;CIGAR=1X;DP=193;DPB=193;DPRA=3.95556;EPP=35.5824;EPPR=389.532;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=608;QR=7135;RO=178;RPL=0;RPP=35.5824;RPPR=389.532;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=178;SRP=389.532;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:24:23,1:23:919:1:41:0,-3.13015,-78.919 0/0:97:95,2:95:3804:2:81:0,-21.5142,-334.674 0/1:57:45,12:45:1803:12:486:-26.9315,0,-145.322 0/0:15:15,0:15:609:0:0:0,-4.51545,-55.1482 dDocent_Contig_1156 14 . A C 6597.68 . AB=0.115385;ABP=136.639;AC=0;AF=0;AN=8;AO=12;CIGAR=1X3M1X;DP=275;DPB=275;DPRA=2.97143;EPP=29.068;EPPR=128.956;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=470;QR=2288;RO=58;RPL=0;RPP=29.068;RPPR=128.956;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:104:22,12,70:22:868:12,70:470,2830:-226.708,-194.688,-262.489,0,-32.7738,-50.3447 0|0:68:25,0,43:25:982:0,43:0,1724:-134.909,-142.435,-223.196,0,-81.1564,-68.2121 0|0:68:9,0,59:9:357:0,59:0,2352:-191.37,-194.08,-223.467,0,-29.784,-12.0232 0|0:35:2,0,33:2:81:0,33:0,1313:-110.748,-111.35,-118.029,-2.85032,-9.93399,0 dDocent_Contig_1157 86 . G T 87.9467 . AB=0.222222;ABP=21.1059;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=257;DPB=257;DPRA=0.352174;EPP=16.0391;EPPR=548.05;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=198;QR=8971;RO=251;RPL=6;RPP=16.0391;RPPR=548.05;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=251;SRP=548.05;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:100:100,0:100:3624:0:0:0,-30.103,-326.349 0/0:82:82,0:82:2902:0:0:0,-24.6845,-261.399 0/0:48:48,0:48:1714:0:0:0,-14.4494,-154.535 0/1:27:21,6:21:731:6:198:-10.0165,0,-57.9782 dDocent_Contig_1158 18 . G A 2738.74 . AB=0.321739;ABP=98.2341;AC=4;AF=0.5;AN=8;AO=111;CIGAR=1X;DP=345;DPB=345;DPRA=0;EPP=244.044;EPPR=511.135;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4245;QR=9356;RO=234;RPL=0;RPP=244.044;RPPR=511.135;RPR=111;RUN=1;SAF=111;SAP=244.044;SAR=0;SRF=234;SRP=511.135;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:106:86,20:86:3430:20:741:-35.0847,0,-276.831 0/1:112:65,47:65:2618:47:1781:-126.812,0,-202.026 0/1:54:38,16:38:1509:16:629:-40.6875,0,-119.801 0/1:73:45,28:45:1799:28:1094:-76.7796,0,-140.145 dDocent_Contig_1159 16 . T C 4747.78 . AB=0.349901;ABP=101.443;AC=4;AF=0.5;AN=8;AO=176;CIGAR=1X;DP=503;DPB=503;DPRA=0;EPP=385.189;EPPR=713.082;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7009;QR=13069;RO=327;RPL=0;RPP=385.189;RPPR=713.082;RPR=176;RUN=1;SAF=176;SAP=385.189;SAR=0;SRF=327;SRP=713.082;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:221:138,83:138:5522:83:3313:-231.703,0,-430.276 0/1:173:119,54:119:4733:54:2161:-142.588,0,-373.812 0/1:74:49,25:49:1969:25:975:-65.7716,0,-155.126 0/1:35:21,14:21:845:14:560:-40.2049,0,-65.8249 dDocent_Contig_1160 43 . T G 1508.09 . AB=0.26378;ABP=126.117;AC=4;AF=0.5;AN=8;AO=67;CIGAR=1X;DP=254;DPB=254;DPRA=0;EPP=148.499;EPPR=406.904;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2573;QR=6417;RO=186;RPL=0;RPP=148.499;RPPR=406.904;RPR=67;RUN=1;SAF=67;SAP=148.499;SAR=0;SRF=186;SRP=406.904;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:86:66,19:66:2261:19:761:-42.8242,0,-177.75 0/1:103:82,21:82:2805:21:764:-38.0454,0,-221.666 0/1:33:18,15:18:640:15:577:-42.3219,0,-47.986 0/1:32:20,12:20:711:12:471:-33.1065,0,-54.679 dDocent_Contig_1161 107 . N G 63.6639 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X2M1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=4.89285;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=67;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. 1|1:2:0,2:0:0:2:67:-6.36314,-0.60206,0 dDocent_Contig_1162 67 . A C 99.1194 . AB=0.150685;ABP=80.3802;AC=1;AF=0.125;AN=8;AO=12;CIGAR=1X;DP=197;DPB=197;DPRA=1.34524;EPP=29.068;EPPR=404.733;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=395;QR=7153;RO=185;RPL=0;RPP=29.068;RPPR=404.733;RPR=12;RUN=1;SAF=0;SAP=29.068;SAR=12;SRF=185;SRP=404.733;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:73:62,11:62:2447:11:361:-10.8328,0,-198.416 0/0:64:64,0:64:2418:0:0:0,-19.2659,-217.782 0/0:40:39,1:39:1509:1:34:0,-8.64229,-132.655 0/0:20:20,0:20:779:0:0:0,-6.0206,-70.4288 dDocent_Contig_1163 14 . T G 48.6571 . AB=0.146341;ABP=47.552;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=88;DPB=88;DPRA=2.61702;EPP=16.0391;EPPR=181.071;GTI=0;LEN=1;MEANALT=1;MQM=47;MQMR=59.8293;NS=4;NUMALT=1;ODDS=0;PAIRED=0.666667;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=238;QR=3261;RO=82;RPL=0;RPP=16.0391;RPPR=181.071;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=82;SRP=181.071;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:41:35,6:35:1381:6:238:-5.78648,0,-112.169 0/0:27:27,0:27:1073:0:0:0,-8.12781,-96.8472 0/0:14:14,0:14:568:0:0:0,-4.21442,-51.4622 0/0:6:6,0:6:239:0:0:0,-1.80618,-21.8824 dDocent_Contig_1165 1 . N G 147.492 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=152;QR=0;RO=0;RPL=0;RPP=11.6962;RPPR=0;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:111:-10.3495,-0.90309,0 1/1:1:0,1:0:0:1:41:-4.09457,-0.30103,0 ./.:.:.:.:.:.:.:. dDocent_Contig_1166 66 . A T 112.577 . AB=0.25;ABP=16.0391;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1M3I1M1X;DP=102;DPB=108.667;DPRA=0.923077;EPP=16.0391;EPPR=204.957;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=216;QR=3650;RO=93;RPL=6;RPP=16.0391;RPPR=204.957;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=93;SRP=204.957;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:47:46,0:46:1804:0:0:0,-13.8474,-162.184 0|1:24:17,6:17:683:6:216:-12.4795,0,-54.4874 0|0:15:15,0:15:596:0:0:0,-4.51545,-53.9802 0|0:16:15,0:15:567:0:0:0,-4.51545,-50.9577 dDocent_Contig_1168 80 . T G 8927.75 . AB=0.5328;ABP=8.85069;AC=4;AF=0.5;AN=8;AO=333;CIGAR=1X;DP=625;DPB=625;DPRA=0;EPP=726.111;EPPR=632.737;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.990991;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=12062;QR=10600;RO=290;RPL=333;RPP=726.111;RPPR=632.737;RPR=0;RUN=1;SAF=333;SAP=726.111;SAR=0;SRF=290;SRP=632.737;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:210:90,119:90:3309:119:4348:-328.292,0,-234.827 0/1:176:94,81:94:3443:81:2920:-209.969,0,-257.013 0/1:164:84,80:84:3056:80:2873:-209.421,0,-225.885 0/1:75:22,53:22:792:53:1921:-150.583,0,-49.023 dDocent_Contig_1169 48 . C G 1172.21 . AB=0.312925;ABP=47.6954;AC=3;AF=0.375;AN=8;AO=46;CIGAR=1X;DP=193;DPB=193;DPRA=1.06522;EPP=102.898;EPPR=313.59;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1827;QR=5831;RO=147;RPL=0;RPP=102.898;RPPR=313.59;RPR=46;RUN=1;SAF=46;SAP=102.898;SAR=0;SRF=147;SRP=322.217;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:102:76,26:76:3043:26:1026:-61.926,0,-243.234 0/0:46:46,0:46:1801:0:0:0,-13.8474,-162.293 0/1:24:8,16:8:318:16:641:-50.8002,0,-21.7607 0/1:21:17,4:17:669:4:160:-8.4618,0,-54.2116 dDocent_Contig_1170 162 . C T 606.472 . AB=0.196319;ABP=133.578;AC=2;AF=0.25;AN=8;AO=32;CIGAR=1X;DP=316;DPB=316;DPRA=1.06536;EPP=72.4974;EPPR=619.708;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1239;QR=11114;RO=284;RPL=32;RPP=72.4974;RPPR=619.708;RPR=0;RUN=1;SAF=0;SAP=72.4974;SAR=32;SRF=0;SRP=619.708;SRR=284;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:96:96,0:96:3781:0:0:0,-28.8989,-340.291 0/1:89:66,23:66:2565:23:907:-55.1394,0,-204.197 0/0:57:57,0:57:2219:0:0:0,-17.1587,-199.88 0/1:74:65,9:65:2549:9:332:-7.9515,0,-207.265 dDocent_Contig_1171 107 . N T 955.959 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=24;CIGAR=2X;DP=34;DPB=34;DPRA=0;EPP=55.1256;EPPR=0;GTI=0;LEN=1;MEANALT=1.33333;MQM=59.9167;MQMR=0;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=745;QR=0;RO=0;RPL=0;RPP=55.1256;RPPR=0;RPR=24;RUN=1;SAF=0;SAP=55.1256;SAR=24;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:22:0,0,22:0:0:0,22:0,695:-62.8498,-62.8498,-62.8498,-6.62266,-6.62266,0 1|1:11:0,10,1:0:0:10,1:324,20:-29.2647,-3.0103,0,-27.777,-1.3114,-27.476 1|1:1:0,0,1:0:0:0,1:0,30:-2.99957,-2.99957,-2.99957,-0.30103,-0.30103,0 .:.:.:.:.:.:.:. dDocent_Contig_1172 1 . N G 116.147 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=117;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1:0,1:0:0:1:41:-4.09457,-0.30103,0 1/1:2:0,2:0:0:2:76:-7.21426,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_1174 8 . G T 243.682 . AB=0.170213;ABP=91.8097;AC=2;AF=0.25;AN=8;AO=16;CIGAR=1X;DP=198;DPB=198;DPRA=0.903846;EPP=37.7539;EPPR=398.218;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=604;QR=6922;RO=182;RPL=0;RPP=37.7539;RPPR=398.218;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=182;SRP=398.218;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:67:67,0:67:2551:0:0:0,-20.169,-229.785 0/1:53:41,12:41:1560:12:448:-24.7074,0,-124.713 0/1:41:37,4:37:1410:4:156:-2.07506,0,-114.834 0/0:37:37,0:37:1401:0:0:0,-11.1381,-126.365 dDocent_Contig_1175 87 . A T 206.112 . AB=0.272727;ABP=22.751;AC=1;AF=0.125;AN=8;AO=12;CIGAR=1X;DP=152;DPB=152;DPRA=1.22222;EPP=29.068;EPPR=307.016;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=383;QR=4768;RO=140;RPL=12;RPP=29.068;RPPR=307.016;RPR=0;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=140;SRP=307.016;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:44:32,12:32:1083:12:383:-21.532,0,-84.53 0/0:24:24,0:24:828:0:0:0,-7.22472,-74.8379 0/0:61:61,0:61:2074:0:0:0,-18.3628,-186.933 0/0:23:23,0:23:783:0:0:0,-6.92369,-70.7857 dDocent_Contig_1176 73 . T C 133.963 . AB=0.315789;ABP=8.61041;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X1M1X;DP=90;DPB=90;DPRA=0.802817;EPP=16.0391;EPPR=185.414;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=222;QR=3071;RO=84;RPL=6;RPP=16.0391;RPPR=185.414;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=84;SRP=185.414;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:46:46,0:46:1676:0:0:0,-13.8474,-151.114 0|1:19:13,6:13:464:6:222:-14.6182,0,-36.3729 0|0:16:16,0:16:600:0:0:0,-4.81648,-54.3389 0|0:9:9,0:9:331:0:0:0,-2.70927,-30.1407 dDocent_Contig_1177 130 . T C 5010.38 . AB=0.635802;ABP=28.9607;AC=5;AF=0.625;AN=8;AO=158;CIGAR=1X;DP=217;DPB=217;DPRA=0;EPP=346.103;EPPR=131.127;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6142;QR=2211;RO=59;RPL=0;RPP=346.103;RPPR=131.127;RPR=158;RUN=1;SAF=0;SAP=346.103;SAR=158;SRF=0;SRP=131.127;SRR=59;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:78:33,45:33:1228:45:1771:-136.135,0,-87.3078 1/1:55:0,55:0:0:55:2156:-194.225,-16.5567,0 0/1:54:15,39:15:568:39:1486:-117.741,0,-35.1908 0/1:30:11,19:11:415:19:729:-56.9042,0,-28.6597 dDocent_Contig_1178 129 . C T 611.566 . AB=0.236111;ABP=90.1105;AC=1;AF=0.125;AN=8;AO=46;CIGAR=1X;DP=475;DPB=475;DPRA=1.98742;EPP=102.898;EPPR=932.4;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1577;QR=14656;RO=428;RPL=0;RPP=102.898;RPPR=932.4;RPR=46;RUN=1;SAF=0;SAP=102.898;SAR=46;SRF=0;SRP=932.4;SRR=428;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:144:110,34:110:3782:34:1168:-62.0774,0,-297.252 0/0:172:160,12:160:5442:12:409:0,-14.6397,-452.802 0/0:118:118,0:118:4045:0:0:0,-35.5215,-364.26 0/0:41:40,0:40:1387:0:0:0,-12.0412,-124.78 dDocent_Contig_1180 35 . G A 421.817 . AB=0.296875;ABP=25.9465;AC=3;AF=0.375;AN=8;AO=19;CIGAR=1X;DP=74;DPB=74;DPRA=2.13333;EPP=44.2683;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=715;QR=2130;RO=55;RPL=0;RPP=44.2683;RPPR=122.441;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:15,5:15:565:5:200:-12.3589,0,-45.1578 0/1:27:16,11:16:646:11:409:-29.0195,0,-50.347 0/0:10:10,0:10:371:0:0:0,-3.0103,-33.7224 0/1:17:14,3:14:548:3:106:-4.76978,0,-44.5452 dDocent_Contig_1183 14 . G C 963.57 . AB=0.282609;ABP=59.6574;AC=3;AF=0.375;AN=8;AO=39;CIGAR=1X;DP=197;DPB=197;DPRA=0.779661;EPP=87.6977;EPPR=346.103;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1564;QR=6293;RO=158;RPL=0;RPP=87.6977;RPPR=346.103;RPR=39;RUN=1;SAF=39;SAP=87.6977;SAR=0;SRF=158;SRP=346.103;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:81:51,30:51:2026:30:1202:-84.0706,0,-158.148 0/0:59:59,0:59:2370:0:0:0,-17.7608,-213.449 0/1:26:20,6:20:778:6:244:-14.512,0,-62.5126 0/1:31:28,3:28:1119:3:118:-1.66965,0,-91.6622 dDocent_Contig_1187 8 . G T 613.5 . AB=0.252252;ABP=62.1878;AC=3;AF=0.375;AN=8;AO=29;CIGAR=1X;DP=126;DPB=126;DPRA=0;EPP=65.983;EPPR=213.643;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1124;QR=3688;RO=97;RPL=0;RPP=65.983;RPPR=213.643;RPR=29;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=97;SRP=213.643;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:32,4:32:1210:4:155:-3.48836,0,-98.3543 0/0:15:14,1:14:537:1:39:0,-0.618885,-44.7783 0/1:46:33,13:33:1254:13:506:-32.0419,0,-99.2998 0/1:29:18,11:18:687:11:424:-29.7843,0,-53.4326 dDocent_Contig_1188 31 . T A 416.746 . AB=0.230769;ABP=60.3038;AC=4;AF=0.5;AN=8;AO=21;CIGAR=1X;DP=91;DPB=91;DPRA=0;EPP=48.6112;EPPR=155.013;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.952381;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=802;QR=2807;RO=70;RPL=0;RPP=48.6112;RPPR=155.013;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=70;SRP=155.013;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:35:32,3:32:1282:3:120:-0.65126,0,-105.106 0/1:34:21,13:21:843:13:486:-33.8407,0,-65.9466 0/1:14:12,2:12:481:2:79:-3.28321,0,-39.4262 0/1:8:5,3:5:201:3:117:-8.50105,0,-16.0627 dDocent_Contig_1190 14 . C A 6804.67 . AB=0.100156;ABP=890.361;AC=0;AF=0;AN=8;AO=64;CIGAR=2X2M1X;DP=639;DPB=639;DPRA=0;EPP=141.985;EPPR=667.481;GTI=0;LEN=1;MEANALT=3.25;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=0.990196;PAO=0;PQA=0;PQR=0;PRO=0;QA=2519;QR=12092;RO=306;RPL=0;RPP=141.985;RPPR=667.481;RPR=64;RUN=1;SAF=64;SAP=141.985;SAR=0;SRF=306;SRP=667.481;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:211:102,93,8,5:102:4050:93,8,5:3629,311,204:-267.585,0,-305.422,-272.737,-307.865,-603.743,-281.458,-316.586,-589.319,-613.367 0|0:168:65,65,27,11:65:2562:65,27,11:2574,1068,445:-192.275,0,-191.209,-123.949,-122.882,-326.598,-175.151,-174.084,-298.035,-382.617 0|0:177:100,56,21,0:100:3937:56,21,0:2193,822,0:-150.217,0,-307.013,-112.738,-256.288,-430.286,-180.32,-323.87,-436.607,-504.19 0|0:83:39,27,8,9:39:1543:27,8,9:1065,318,358:-75.8791,0,-118.857,-61.4372,-100.803,-186.015,-58.1457,-97.5115,-158.95,-182.423 dDocent_Contig_1191 101 . N C 54.1656 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=4.89285;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=57;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:57:-5.41331,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_1192 51 . G A 406.553 . AB=0.204082;ABP=77.5494;AC=2;AF=0.25;AN=8;AO=20;CIGAR=2X;DP=159;DPB=159;DPRA=1.60656;EPP=46.4397;EPPR=300.502;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.875912;PAO=0;PQA=0;PQR=0;PRO=0;QA=799;QR=5356;RO=137;RPL=20;RPP=46.4397;RPPR=300.502;RPR=0;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=137;SRP=300.502;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:23:23,0:23:902:0:0:0,-6.92369,-81.4877 0|1:71:55,15:55:2159:15:602:-33.0451,0,-173.025 0|0:38:38,0:38:1462:0:0:0,-11.4391,-131.828 0|1:27:21,5:21:833:5:197:-10.0539,0,-67.2557 dDocent_Contig_1193 19 . A T 413.12 . AB=0.0540541;ABP=66.922;AC=0;AF=0;AN=8;AO=2;CIGAR=1X2M5X2M1X4M1X;DP=109;DPB=109;DPRA=0;EPP=7.35324;EPPR=174.557;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=3090;RO=79;RPL=0;RPP=7.35324;RPPR=174.557;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=79;SRP=174.557;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:47:37,0,0,7:37:1464:0,0,7:0,0,280:-11.9957,-23.1338,-143.643,-23.1338,-143.643,-143.643,0,-120.577,-120.577,-118.47 0|0:37:22,2,2,10:22:852:2,2,10:80,81,408:-27.0507,-27.0838,-96.4583,-26.9939,-90.3805,-96.3688,0,-63.3917,-63.3021,-66.9723 0|0:14:12,0,0,2:12:457:0,0,2:0,0,82:-3.56526,-7.17762,-44.632,-7.17762,-44.632,-44.632,0,-37.8597,-37.8597,-37.2577 0|0:11:8,1,0,2:8:317:1,0,2:39,0,80:-4.18853,-3.3942,-29.1832,-6.59677,-29.4843,-32.6895,0,-22.8934,-26.0985,-25.4965 dDocent_Contig_1194 81 . A G 246.572 . AB=0.17;ABP=97.5996;AC=1;AF=0.125;AN=8;AO=17;CIGAR=1X;DP=272;DPB=272;DPRA=1.74419;EPP=39.9253;EPPR=556.736;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=615;QR=8958;RO=255;RPL=17;RPP=39.9253;RPPR=556.736;RPR=0;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=255;SRP=556.736;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:100:83,17:83:2906:17:615:-25.578,0,-231.663 0/0:82:82,0:82:2892:0:0:0,-24.6845,-260.504 0/0:49:49,0:49:1706:0:0:0,-14.7505,-153.814 0/0:41:41,0:41:1454:0:0:0,-12.3422,-131.154 dDocent_Contig_1195 43 . C G 825.212 . AB=0.276423;ABP=56.4144;AC=3;AF=0.375;AN=8;AO=38;CIGAR=1X;DP=228;DPB=228;DPRA=0;EPP=85.5263;EPPR=415.59;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1513;QR=7581;RO=190;RPL=0;RPP=85.5263;RPPR=415.59;RPR=38;RUN=1;SAF=38;SAP=85.5263;SAR=0;SRF=190;SRP=415.59;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:105:101,4:101:4005:4:152:0,-17.5626,-346.395 0/1:55:46,9:46:1849:9:363:-16.4776,0,-150.059 0/1:54:31,23:31:1247:23:931:-67.8374,0,-96.2438 0/1:14:12,2:12:480:2:67:-2.14766,0,-39.3371 dDocent_Contig_1197 14 . C A 937.515 . AB=0.190476;ABP=212.712;AC=2;AF=0.25;AN=8;AO=49;CIGAR=2X;DP=507;DPB=507;DPRA=0.808559;EPP=109.412;EPPR=997.545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1946;QR=18337;RO=458;RPL=0;RPP=109.412;RPPR=997.545;RPR=49;RUN=1;SAF=49;SAP=109.412;SAR=0;SRF=458;SRP=997.545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:107:106,1:106:4245:1:41:0,-28.1156,-377.915 0|0:148:148,0:148:5867:0:0:0,-44.5524,-527.825 0|1:134:107,27:107:4308:27:1061:-55.4457,0,-347.326 0|1:118:97,21:97:3917:21:844:-40.7495,0,-316.984 dDocent_Contig_1198 15 . G A 12927.9 . AB=0.384365;ABP=145.634;AC=4;AF=0.5;AN=8;AO=472;CIGAR=1X;DP=1228;DPB=1228;DPRA=0;EPP=1027.95;EPPR=1640.3;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.970339;PAIREDR=0.992042;PAO=0;PQA=0;PQR=0;PRO=0;QA=18534;QR=29965;RO=754;RPL=0;RPP=1027.95;RPPR=1640.3;RPR=472;RUN=1;SAF=472;SAP=1027.95;SAR=0;SRF=754;SRP=1640.3;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:373:201,172:201:8003:172:6701:-490.555,0,-607.578 0/1:301:178,122:178:7150:122:4826:-343.552,0,-552.432 0/1:303:206,96:206:8130:96:3776:-248.856,0,-640.273 0/1:251:169,82:169:6682:82:3231:-215.318,0,-525.55 dDocent_Contig_1200 98 . N A 170.827 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=5;CIGAR=1X;DP=5;DPB=5;DPRA=0;EPP=13.8677;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=0.8;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=168;QR=0;RO=0;RPL=5;RPP=13.8677;RPPR=0;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1:0,1:0:0:1:35:-3.49863,-0.30103,0 1/1:1:0,1:0:0:1:34:-3.39891,-0.30103,0 1/1:2:0,2:0:0:2:64:-6.07869,-0.60206,0 1/1:1:0,1:0:0:1:35:-3.49863,-0.30103,0 dDocent_Contig_1220 1 . N G 144.021 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=6;CIGAR=1X;DP=6;DPB=6;DPRA=0;EPP=16.0391;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=30.6667;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0.666667;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=241;QR=0;RO=0;RPL=0;RPP=16.0391;RPPR=0;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:79:-1.13972,-0.60206,0 1/1:4:0,4:0:0:4:162:-12.944,-1.20412,0 ./.:.:.:.:.:.:.:. dDocent_Contig_1247 29 . G C 97.5106 . AB=0.14;ABP=59.2949;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X;DP=184;DPB=184;DPRA=1.2439;EPP=22.5536;EPPR=380.846;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=364;QR=6750;RO=174;RPL=0;RPP=22.5536;RPPR=380.846;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=174;SRP=380.846;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:29:29,0:29:1116:0:0:0,-8.72987,-100.721 0/1:50:43,7:43:1667:7:285:-10.9729,0,-135.208 0/0:52:50,2:50:1924:2:79:0,-8.15593,-165.877 0/0:53:52,0:52:2043:0:0:0,-15.6536,-183.655 dDocent_Contig_1248 21 . G A 292.238 . AB=0.205479;ABP=58.011;AC=2;AF=0.25;AN=8;AO=19;CIGAR=1X;DP=151;DPB=151;DPRA=0;EPP=44.2683;EPPR=289.645;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=0.992424;PAO=0;PQA=0;PQR=0;PRO=0;QA=748;QR=5269;RO=132;RPL=0;RPP=44.2683;RPPR=289.645;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=132;SRP=289.645;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:30:28,2:28:1124:2:81:0,-1.34517,-93.7583 0/1:40:29,11:29:1161:11:435:-27.4625,0,-92.7257 0/0:48:46,2:46:1823:2:79:0,-6.95181,-156.78 0/1:33:29,4:29:1161:4:153:-4.20465,0,-94.8332 dDocent_Contig_1249 10 . G C 1637.07 . AB=0.356725;ABP=33.4998;AC=4;AF=0.5;AN=8;AO=61;CIGAR=1X;DP=171;DPB=171;DPRA=0;EPP=135.47;EPPR=241.872;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.852459;PAIREDR=0.927273;PAO=0;PQA=0;PQR=0;PRO=0;QA=2437;QR=4416;RO=110;RPL=0;RPP=135.47;RPPR=241.872;RPR=61;RUN=1;SAF=61;SAP=135.47;SAR=0;SRF=110;SRP=241.872;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:53:26,27:26:1036:27:1077:-81.2601,0,-77.5733 0/1:67:50,17:50:2030:17:673:-40.7261,0,-162.71 0/1:33:21,12:21:846:12:484:-33.9763,0,-66.5184 0/1:18:13,5:13:504:5:203:-13.2343,0,-40.2774 dDocent_Contig_1250 18 . A G 120.232 . AB=0.119658;ABP=150.021;AC=2;AF=0.25;AN=8;AO=22;CIGAR=1X;DP=397;DPB=397;DPRA=0.654229;EPP=50.7827;EPPR=817.312;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=845;QR=15008;RO=375;RPL=0;RPP=50.7827;RPPR=817.312;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=375;SRP=817.312;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:134:134,0:134:5342:0:0:0,-40.338,-480.614 0/0:146:138,8:138:5522:8:301:0,-16.5142,-469.362 0/1:62:56,6:56:2254:6:242:-3.49325,0,-184.353 0/1:55:47,8:47:1890:8:302:-10.9724,0,-153.745 dDocent_Contig_1251 14 . T C 7443.15 . AB=0.526539;ABP=5.89177;AC=4;AF=0.5;AN=8;AO=248;CIGAR=1X4M1X1M;DP=471;DPB=469.286;DPRA=0;EPP=541.535;EPPR=374.332;GTI=0;LEN=1;MEANALT=4.5;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=5.55112e-17;PAIRED=0.0483871;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=9743;QR=6727;RO=171;RPL=0;RPP=541.535;RPPR=374.332;RPR=248;RUN=1;SAF=248;SAP=541.535;SAR=0;SRF=171;SRP=374.332;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:144:52,10,10,62:52:2070:10,10,62:388,397,2409:-182.276,-166.053,-333.493,-165.251,-303.825,-332.691,0,-138.576,-137.773,-151.787 0|1:133:51,4,0,75:51:2018:4,0,75:157,0,2959:-228.091,-230.531,-395.409,-243.443,-396.613,-409.525,0,-153.17,-166.081,-143.504 0|1:134:43,1,3,85:43:1665:1,3,85:40,118,3343:-262.013,-271.662,-408.129,-265.251,-398.724,-401.116,0,-133.471,-127.059,-111.178 0|1:60:25,1,7,26:25:974:1,7,26:40,279,1032:-77.4245,-81.6551,-161.402,-61.9742,-138.727,-139.915,0,-76.749,-57.0669,-72.2176 dDocent_Contig_1252 60 . T C 520.125 . AB=0.439024;ABP=4.33437;AC=1;AF=0.125;AN=8;AO=18;CIGAR=1X;DP=178;DPB=178;DPRA=0.89781;EPP=42.0968;EPPR=350.446;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=725;QR=5899;RO=160;RPL=18;RPP=42.0968;RPPR=350.446;RPR=0;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=160;SRP=350.446;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:53:53,0:53:1960:0:0:0,-15.9546,-176.628 0/0:78:78,0:78:2917:0:0:0,-23.4803,-262.687 0/1:41:23,18:23:797:18:725:-53.2343,0,-59.6814 0/0:6:6,0:6:225:0:0:0,-1.80618,-20.6086 dDocent_Contig_1253 179 . G T 379.711 . AB=0.269841;ABP=31.9977;AC=3;AF=0.375;AN=8;AO=17;CIGAR=1X;DP=113;DPB=113;DPRA=0.42;EPP=39.9253;EPPR=211.472;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=657;QR=3860;RO=96;RPL=17;RPP=39.9253;RPPR=211.472;RPR=0;RUN=1;SAF=0;SAP=39.9253;SAR=17;SRF=0;SRP=211.472;SRR=96;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:50:50,0:50:2015:0:0:0,-15.0515,-181.533 0/1:36:29,7:29:1155:7:273:-14.1003,0,-93.3835 0/1:17:8,9:8:328:9:345:-26.2901,0,-24.7728 0/1:10:9,1:9:362:1:39:-0.886264,0,-29.9328 dDocent_Contig_1254 29 . G T 126.64 . AB=0.127907;ABP=106.433;AC=2;AF=0.25;AN=8;AO=11;CIGAR=1X;DP=131;DPB=131;DPRA=1.91111;EPP=26.8965;EPPR=263.587;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=447;QR=4711;RO=120;RPL=0;RPP=26.8965;RPPR=263.587;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=120;SRP=263.587;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:32:32,0:32:1208:0:0:0,-9.63296,-108.992 0/1:58:50,8:50:2014:8:325:-12.1599,0,-163.989 0/1:28:25,3:25:996:3:122:-2.94365,0,-81.5122 0/0:13:13,0:13:493:0:0:0,-3.91339,-44.7022 dDocent_Contig_1255 8 . G A 328.808 . AB=0.0555556;ABP=250.076;AC=3;AF=0.375;AN=8;AO=9;CIGAR=1X5M3D3M;DP=231;DPB=231.25;DPRA=0;EPP=22.5536;EPPR=415.59;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=1.38778e-17;PAIRED=0.888889;PAIREDR=0.984211;PAO=0;PQA=0;PQR=0;PRO=0;QA=345;QR=7404;RO=190;RPL=0;RPP=22.5536;RPPR=415.59;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=190;SRP=415.59;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:98:81,10,7:81:3120:10,7:385,268:-4.84286,0,-253.152,-7.22236,-234.168,-261.299 0|1:46:31,11,1:31:1215:11,1:436,39:-23.7787,0,-96.631,-29.903,-96.7364,-129.534 0|0:46:43,2,1:43:1683:2,1:80,38:0,-6.89472,-144.686,-9.8245,-142.172,-147.926 0|1:41:35,6,0:35:1386:6,0:239,0:-8.22572,0,-112.668,-18.7618,-114.474,-132.858 dDocent_Contig_1256 98 . N G 263.077 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=8;CIGAR=2X;DP=8;DPB=9;DPRA=0;EPP=20.3821;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=1;PQA=31;PQR=0;PRO=0;QA=279;QR=0;RO=0;RPL=8;RPP=20.3821;RPPR=0;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:4:0,4:0:0:4:140:-12.9449,-1.20412,0 1|1:3:0,3:0:0:3:104:-9.384,-0.90309,0 .:.:.:.:.:.:.:. 1|1:1:0,1:0:0:1:35:-3.49863,-0.30103,0 dDocent_Contig_1257 8 . G A 1267.62 . AB=0.446602;ABP=5.56125;AC=2;AF=0.25;AN=8;AO=48;CIGAR=1X;DP=153;DPB=153;DPRA=2.85417;EPP=107.241;EPPR=231.015;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.0416667;PAIREDR=0.819048;PAO=0;PQA=0;PQR=0;PRO=0;QA=1851;QR=3982;RO=105;RPL=0;RPP=107.241;RPPR=231.015;RPR=48;RUN=1;SAF=48;SAP=107.241;SAR=0;SRF=105;SRP=231.015;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:48:12,36:12:457:36:1384:-110.394,0,-27.0288 0/1:55:45,10:45:1692:10:389:-18.8117,0,-135.978 0/0:34:32,2:32:1225:2:78:0,-2.83155,-103.141 0/0:16:16,0:16:608:0:0:0,-4.81648,-55.0581 dDocent_Contig_1258 105 . N C 62.7156 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=3X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=4.89285;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=66;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:2:0,2:0:0:2:66:-6.26831,-0.60206,0 .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. dDocent_Contig_1259 43 . G A 87.3817 . AB=0.126984;ABP=79.1497;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=137;DPB=137;DPRA=2.55405;EPP=20.3821;EPPR=283.13;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=314;QR=5143;RO=129;RPL=0;RPP=20.3821;RPPR=283.13;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=129;SRP=283.13;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:63:55,8:55:2193:8:314:-9.65899,0,-178.575 0/0:35:35,0:35:1389:0:0:0,-10.536,-125.268 0/0:19:19,0:19:755:0:0:0,-5.71957,-68.2713 0/0:20:20,0:20:806:0:0:0,-6.0206,-72.8567 dDocent_Contig_1260 25 . G C 835.74 . AB=0.111111;ABP=85.7675;AC=0;AF=0;AN=8;AO=7;CIGAR=1X1M1X4M;DP=129;DPB=125;DPRA=0;EPP=18.2106;EPPR=183.243;GTI=0;LEN=1;MEANALT=2.5;MQM=19;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=133;QR=3134;RO=83;RPL=0;RPP=18.2106;RPPR=183.243;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=83;SRP=183.243;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:41:26,2,0,13:26:976:2,0,13:38,0,496:-33.0515,-38.6268,-117.97,-40.8783,-118.572,-120.842,0,-77.8832,-80.1488,-76.2355 0|0:49:34,0,1,14:34:1292:0,1,14:0,40,539:-34.0062,-44.2412,-150.19,-40.9451,-146.895,-146.594,0,-105.934,-102.638,-101.72 0|0:22:13,5,0,3:13:483:5,0,3:95,0,113:-5.41099,-3.72994,-41.7639,-9.32438,-43.269,-48.9245,0,-34.0076,-39.6561,-38.753 0|0:17:10,0,6,1:10:383:0,6,1:0,238,38:-16.5947,-19.605,-51.0304,0,-31.4347,-29.6285,-16.4908,-47.9144,-28.3184,-47.6133 dDocent_Contig_1261 39 . A G 501.152 . AB=0.221154;ABP=73.2491;AC=2;AF=0.25;AN=8;AO=33;CIGAR=1X;DP=487;DPB=487;DPRA=0;EPP=74.6689;EPPR=988.859;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1326;QR=18086;RO=454;RPL=0;RPP=74.6689;RPPR=988.859;RPR=33;RUN=1;SAF=33;SAP=74.6689;SAR=0;SRF=454;SRP=988.859;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:211:202,9:202:8086:9:362:0,-30.5731,-694.362 0/0:172:171,1:171:6805:1:40:0,-47.7815,-608.168 0/1:65:54,11:54:2123:11:441:-20.4775,0,-171.689 0/1:39:27,12:27:1072:12:483:-32.0814,0,-85.0249 dDocent_Contig_1262 7 . T C 4546.45 . AB=0.170635;ABP=477.908;AC=0;AF=0;AN=8;AO=86;CIGAR=2X;DP=504;DPB=504;DPRA=0;EPP=189.757;EPPR=537.193;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3317;QR=9396;RO=246;RPL=0;RPP=189.757;RPPR=537.193;RPR=86;RUN=1;SAF=86;SAP=189.757;SAR=0;SRF=246;SRP=537.193;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:122:44,26,52:44:1683:26,52:1003,1990:-150.057,-80.9315,-211.211,0,-55.7335,-122.451 0|0:171:89,35,46:89:3417:35,46:1358,1750:-116.732,-31.9394,-301.899,0,-168.909,-266.643 0|0:125:52,18,55:52:1970:18,55:691,2111:-157.627,-116.559,-272.648,0,-104.783,-144.949 0|0:86:61,7,17:61:2326:7,17:265,658:-35.7185,-32.3536,-221.067,0,-169.119,-185.728 dDocent_Contig_1263 11 . G C 63.9561 . AB=0.112903;ABP=83.705;AC=2;AF=0.25;AN=8;AO=7;CIGAR=1X;DP=154;DPB=154;DPRA=0.673913;EPP=18.2106;EPPR=322.217;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=286;QR=5814;RO=147;RPL=0;RPP=18.2106;RPPR=322.217;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=147;SRP=322.217;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:38:33,5:33:1298:5:204:-7.30489,0,-105.64 0/0:33:33,0:33:1319:0:0:0,-9.93399,-118.97 0/0:59:59,0:59:2363:0:0:0,-17.7608,-212.818 0/1:24:22,2:22:834:2:82:-0.554958,0,-68.138 dDocent_Contig_1265 48 . A T 92.1099 . AB=0.238095;ABP=15.5221;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=66;DPB=66;DPRA=2.88235;EPP=18.2106;EPPR=131.127;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=259;QR=2328;RO=59;RPL=0;RPP=18.2106;RPPR=131.127;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=59;SRP=131.127;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:16,5:16:647:5:179:-10.1313,0,-52.2423 0/0:8:8,0:8:291:0:0:0,-2.40824,-26.5229 0/0:28:26,2:26:1028:2:80:0,-0.837049,-85.2242 0/0:9:9,0:9:362:0:0:0,-2.70927,-32.9424 dDocent_Contig_1266 32 . G C 11057.7 . AB=0.448747;ABP=23.0432;AC=4;AF=0.5;AN=8;AO=394;CIGAR=1X;DP=878;DPB=878;DPRA=0;EPP=858.57;EPPR=1051.83;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.989648;PAO=0;PQA=0;PQR=0;PRO=0;QA=15284;QR=18729;RO=483;RPL=0;RPP=858.57;RPPR=1051.83;RPR=394;RUN=1;SAF=394;SAP=858.57;SAR=0;SRF=483;SRP=1051.83;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:272:171,101:171:6649:101:3938:-272.552,0,-516.336 0/1:169:75,94:75:2898:94:3700:-282.155,0,-210.082 0/1:233:142,91:142:5540:91:3518:-246.533,0,-428.335 0/1:204:95,108:95:3642:108:4128:-310.02,0,-266.343 dDocent_Contig_1267 29 . C T 2008.47 . AB=0.448718;ABP=6.57374;AC=4;AF=0.5;AN=8;AO=70;CIGAR=1X;DP=156;DPB=156;DPRA=0;EPP=155.013;EPPR=189.757;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2800;QR=3439;RO=86;RPL=0;RPP=155.013;RPPR=189.757;RPR=70;RUN=1;SAF=70;SAP=155.013;SAR=0;SRF=86;SRP=189.757;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:78:39,39:39:1541:39:1558:-116.973,0,-115.445 0/1:50:31,19:31:1252:19:762:-53.8436,0,-97.8969 0/1:19:10,9:10:405:9:361:-27.1339,0,-31.0908 0/1:9:6,3:6:241:3:119:-8.38523,0,-19.357 dDocent_Contig_1269 27 . C T 50.2976 . AB=0.125;ABP=61.6401;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X;DP=215;DPB=215;DPRA=0.666667;EPP=22.5536;EPPR=450.334;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=339;QR=8036;RO=206;RPL=0;RPP=22.5536;RPPR=450.334;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=206;SRP=450.334;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:76:76,0:76:3007:0:0:0,-22.8783,-270.723 0/1:48:42,6:42:1620:6:226:-6.2512,0,-131.591 0/0:53:53,0:53:2024:0:0:0,-15.9546,-182.344 0/0:38:35,3:35:1385:3:113:0,-0.899731,-114.375 dDocent_Contig_1270 40 . C G 265.407 . AB=0.275;ABP=20.5992;AC=1;AF=0.125;AN=8;AO=11;CIGAR=1X;DP=115;DPB=115;DPRA=1.6;EPP=26.8965;EPPR=228.843;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=435;QR=4155;RO=104;RPL=0;RPP=26.8965;RPPR=228.843;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=104;SRP=228.843;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:40:29,11:29:1159:11:435:-27.4615,0,-92.5482 0/0:49:49,0:49:1952:0:0:0,-14.7505,-175.873 0/0:20:20,0:20:803:0:0:0,-6.0206,-72.5851 0/0:6:6,0:6:241:0:0:0,-1.80618,-22.0667 dDocent_Contig_1271 105 . N A 68.3482 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=4X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=56;MQMR=0;NS=1;NUMALT=1;ODDS=4.89285;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=72;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:2:0,2:0:0:2:72:-6.83158,-0.60206,0 .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. dDocent_Contig_1272 18 . C T 627.34 . AB=0.117409;ABP=631.085;AC=4;AF=0.5;AN=8;AO=58;CIGAR=1X4M;DP=494;DPB=494;DPRA=0;EPP=128.956;EPPR=880.285;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=0.706897;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2306;QR=16066;RO=404;RPL=0;RPP=128.956;RPPR=880.285;RPR=58;RUN=1;SAF=58;SAP=128.956;SAR=0;SRF=404;SRP=880.285;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:126:107,0,2,17:107:4249:0,2,17:0,81,661:-22.0793,-54.2895,-404.083,-47.6086,-397.404,-396.802,0,-349.78,-343.101,-344.663 0|1:77:60,3,4,10:60:2393:3,4,10:122,160,400:-14.8862,-22.8836,-219.051,-19.7686,-206.775,-215.634,0,-187.005,-183.889,-194.058 0|1:113:84,7,9,11:84:3336:7,9,11:274,355,440:-10.9587,-13.7235,-286.236,-7.0385,-259.136,-278.95,0,-252.1,-245.416,-271.312 0|1:178:153,5,0,20:153:6088:5,0,20:193,0,805:-20.2992,-50.5113,-550.261,-66.3568,-551.766,-567.614,0,-485.422,-501.27,-495.25 dDocent_Contig_1274 43 . C T 1075.17 . AB=0.350427;ABP=25.7458;AC=3;AF=0.375;AN=8;AO=41;CIGAR=1X;DP=192;DPB=192;DPRA=0.52;EPP=92.0407;EPPR=330.903;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1619;QR=6084;RO=151;RPL=0;RPP=92.0407;RPPR=330.903;RPR=41;RUN=1;SAF=41;SAP=92.0407;SAR=0;SRF=151;SRP=330.903;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:75:75,0:75:3011:0:0:0,-22.5772,-271.07 0/1:45:25,20:25:1013:20:795:-58.3207,0,-77.9165 0/1:47:31,16:31:1252:16:644:-44.1462,0,-98.7972 0/1:25:20,5:20:808:5:180:-9.01671,0,-65.5081 dDocent_Contig_1275 41 . G A 50.3084 . AB=0.108108;ABP=151.081;AC=2;AF=0.25;AN=8;AO=13;CIGAR=1X;DP=242;DPB=242;DPRA=1.38298;EPP=31.2394;EPPR=500.277;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=480;QR=9077;RO=229;RPL=0;RPP=31.2394;RPPR=500.277;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=229;SRP=500.277;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:90:80,10:80:3129:10:363:-5.91402,0,-254.592 0/0:84:83,1:83:3323:1:39:0,-21.39,-295.228 0/0:47:47,0:47:1877:0:0:0,-14.1484,-169.137 0/1:21:19,2:19:748:2:78:-1.08167,0,-61.317 dDocent_Contig_1276 90 . G C 162.476 . AB=0.122807;ABP=284.768;AC=2;AF=0.25;AN=8;AO=28;CIGAR=1X;DP=419;DPB=419;DPRA=1.19372;EPP=63.8115;EPPR=852.056;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=963;QR=13207;RO=391;RPL=28;RPP=63.8115;RPPR=852.056;RPR=0;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=391;SRP=852.056;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:130:130,0:130:4438:0:0:0,-39.1339,-399.621 0/1:101:88,13:88:2978:13:442:-9.70237,0,-237.863 0/1:127:112,15:112:3792:15:521:-8.9889,0,-303.272 0/0:61:61,0:61:1999:0:0:0,-18.3628,-180.176 dDocent_Contig_1277 43 . G T 9045.9 . AB=0.832618;ABP=226.914;AC=5;AF=0.625;AN=8;AO=283;CIGAR=1X;DP=322;DPB=322;DPRA=0;EPP=617.537;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=10868;QR=1500;RO=38;RPL=0;RPP=617.537;RPPR=85.5263;RPR=283;RUN=1;SAF=283;SAP=617.537;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:96:15,81:15:589:81:3133:-253.196,0,-24.4482 1/1:89:0,89:0:0:89:3413:-307.281,-26.7917,0 0/1:103:16,86:16:639:86:3296:-265.671,0,-26.7385 0/1:34:7,27:7:272:27:1026:-82.4096,0,-14.6105 dDocent_Contig_1278 27 . T C 9091.16 . AB=0.743523;ABP=201.841;AC=4;AF=0.5;AN=8;AO=287;CIGAR=1X;DP=386;DPB=386;DPRA=0;EPP=626.223;EPPR=217.986;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.0696864;PAIREDR=0.929293;PAO=0;PQA=0;PQR=0;PRO=0;QA=11449;QR=3972;RO=99;RPL=0;RPP=626.223;RPPR=217.986;RPR=287;RUN=1;SAF=287;SAP=626.223;SAR=0;SRF=99;SRP=217.986;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:117:19,98:19:767:98:3918:-317.387,0,-34.1287 0/1:105:26,79:26:1044:79:3164:-253.218,0,-62.6449 0/1:113:34,79:34:1355:79:3126:-247.391,0,-88.1926 0/1:51:20,31:20:806:31:1241:-96.6107,0,-57.5035 dDocent_Contig_1279 10 . A G 196.383 . AB=0.125;ABP=169.128;AC=1;AF=0.125;AN=8;AO=32;CIGAR=1X;DP=691;DPB=691;DPRA=0;EPP=72.4974;EPPR=1434.01;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.996965;PAO=0;PQA=0;PQR=0;PRO=0;QA=1292;QR=26328;RO=659;RPL=0;RPP=72.4974;RPPR=1434.01;RPR=32;RUN=1;SAF=32;SAP=72.4974;SAR=0;SRF=659;SRP=1434.01;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:236:229,7:229:9198:7:285:0,-45.0187,-801.216 0/0:202:197,5:197:7858:5:202:0,-42.2466,-688.23 0/1:136:119,17:119:4737:17:683:-20.8602,0,-385.301 0/0:117:114,3:114:4535:3:122:0,-23.848,-396.7 dDocent_Contig_1281 121 . T C 151.712 . AB=0.184211;ABP=68.8402;AC=2;AF=0.25;AN=8;AO=20;CIGAR=1X;DP=270;DPB=270;DPRA=0.484848;EPP=46.4397;EPPR=545.878;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=648;QR=8439;RO=250;RPL=0;RPP=46.4397;RPPR=545.878;RPR=20;RUN=1;SAF=0;SAP=46.4397;SAR=20;SRF=0;SRP=545.878;SRR=250;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:110:110,0:110:3716:0:0:0,-33.1133,-334.658 0/0:84:78,6:78:2640:6:205:0,-6.50138,-219.069 0/1:61:54,7:54:1805:7:235:-3.11547,0,-144.365 0/1:15:8,7:8:278:7:208:-14.4966,0,-20.8426 dDocent_Contig_1282 7 . T C 552.177 . AB=0.0972222;ABP=205.922;AC=2;AF=0.25;AN=8;AO=14;CIGAR=1X10M;DP=144;DPB=145.818;DPRA=0;EPP=33.4109;EPPR=213.643;GTI=0;LEN=1;MEANALT=2.75;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=543;QR=3844;RO=97;RPL=0;RPP=33.4109;RPPR=213.643;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=97;SRP=213.643;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:45:24,14,2,5:24:948:14,2,5:544,78,195:-37.4779,0,-73.8006,-38.2908,-71.6035,-115.703,-28.6729,-61.9864,-100.276,-105.183 0|1:33:29,0,0,4:29:1151:0,0,4:0,0,155:-4.39145,-13.1213,-107.883,-13.1213,-107.883,-107.883,0,-95.1499,-95.1499,-93.9458 0|0:34:22,2,6,3:22:876:2,6,3:77,234,117:-12.6134,-12.9145,-84.4527,0,-65.8207,-70.3361,-9.61819,-75.4377,-62.5254,-80.8562 0|0:32:22,4,4,2:22:869:4,4,2:147,156,76:-6.20815,-0.820838,-71.1324,0,-59.5136,-70.3233,-6.59766,-66.1047,-65.2953,-77.5167 dDocent_Contig_1283 12 . T C 8862.34 . AB=0.415313;ABP=29.859;AC=4;AF=0.5;AN=8;AO=179;CIGAR=1X3M1X;DP=431;DPB=431;DPRA=0;EPP=391.704;EPPR=144.156;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6597;QR=2538;RO=65;RPL=0;RPP=391.704;RPPR=144.156;RPR=179;RUN=1;SAF=179;SAP=391.704;SAR=0;SRF=65;SRP=144.156;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:157:21,50,86:21:813:50,86:1844,3293:-347.939,-203.453,-255.187,-84.0103,0,-124.912 1|0:99:9,58,32:9:356:58,32:2139,1167:-238.226,-65.9931,-77.8382,-145.615,0,-165.284 1|0:115:28,43,44:28:1094:43,44:1586,1671:-168.36,-47.0809,-124.079,-39.7542,0,-116.455 1|0:60:7,28,25:7:275:28,25:1028,950:-137.198,-55.2724,-69.4659,-61.3945,0,-76.4934 dDocent_Contig_1284 9 . G A 6771.8 . AB=0.681416;ABP=99.9195;AC=4;AF=0.5;AN=8;AO=231;CIGAR=1X;DP=339;DPB=339;DPRA=0;EPP=504.62;EPPR=237.529;GTI=0;LEN=1;MEANALT=1;MQM=59.2857;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.95671;PAIREDR=0.944444;PAO=0;PQA=0;PQR=0;PRO=0;QA=8743;QR=4137;RO=108;RPL=0;RPP=504.62;RPPR=237.529;RPR=231;RUN=1;SAF=231;SAP=504.62;SAR=0;SRF=108;SRP=237.529;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:129:58,71:58:2243:71:2723:-206.425,0,-163.255 0/1:107:22,85:22:809:85:3220:-256.939,0,-40.9104 0/1:54:8,46:8:312:46:1735:-138.347,0,-12.1893 0/1:49:20,29:20:773:29:1065:-80.9587,0,-55.1482 dDocent_Contig_1286 109 . G A 372.826 . AB=0.442857;ABP=4.99565;AC=4;AF=0.5;AN=8;AO=31;CIGAR=1X;DP=70;DPB=70;DPRA=0;EPP=70.3259;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=30.2581;MQMR=59.4872;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1074;QR=1313;RO=39;RPL=0;RPP=70.3259;RPPR=87.6977;RPR=31;RUN=1;SAF=0;SAP=70.3259;SAR=31;SRF=0;SRP=87.6977;SRR=39;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:8,4:8:276:4:136:-8.85438,0,-21.5637 0/1:26:18,8:18:594:8:280:-8.04968,0,-45.9437 0/1:9:5,4:5:175:4:139:-7.62972,0,-13.3844 0/1:23:8,15:8:268:15:519:-18.2383,0,-17.5232 dDocent_Contig_1288 1 . N A 90.2623 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=3;CIGAR=1X1M14I4M;DP=4;DPB=13.3333;DPRA=1.5;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=33.3333;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=0.666667;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=93;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:2:0,2:0:0:2:73:-6.61987,-0.60206,0 1|1:1:0,1:0:0:1:20:-1.70115,-0.30103,0 1|1:1:0,0:0:0:0:0:0,0,0 .:.:.:.:.:.:.:. dDocent_Contig_1293 112 . G A 596.632 . AB=0.5;ABP=3.0103;AC=3;AF=0.375;AN=8;AO=27;CIGAR=1X;DP=63;DPB=63;DPRA=2;EPP=61.6401;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=877;QR=1196;RO=36;RPL=0;RPP=61.6401;RPPR=81.1833;RPR=27;RUN=1;SAF=0;SAP=61.6401;SAR=27;SRF=0;SRP=81.1833;SRR=36;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:10,18:10:326:18:589:-44.8928,0,-21.2259 0/1:12:6,6:6:206:6:185:-13.3414,0,-15.2644 0/0:9:9,0:9:285:0:0:0,-2.70927,-25.9571 0/1:14:11,3:11:379:3:103:-5.3956,0,-30.2278 dDocent_Contig_1294 52 . A G 175.391 . AB=0.123377;ABP=192.746;AC=1;AF=0.125;AN=8;AO=40;CIGAR=1X;DP=465;DPB=465;DPRA=0;EPP=89.8692;EPPR=925.886;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.8;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1514;QR=16346;RO=425;RPL=40;RPP=89.8692;RPPR=925.886;RPR=0;RUN=1;SAF=40;SAP=89.8692;SAR=0;SRF=425;SRP=925.886;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:133:122,11:122:4756:11:424:0,-1.53166,-389.459 0/1:154:135,19:135:5156:19:720:-18.7609,0,-417.599 0/0:106:101,5:101:3854:5:181:0,-15.2737,-330.262 0/0:72:67,5:67:2580:5:189:0,-4.30259,-214.976 dDocent_Contig_1295 39 . G C 77.4242 . AB=0.333333;ABP=5.18177;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=46;DPB=46;DPRA=0.72973;EPP=9.52472;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=1719;RO=43;RPL=0;RPP=9.52472;RPPR=96.3836;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:6,3:6:242:3:122:-8.66322,0,-19.4477 0/0:10:10,0:10:401:0:0:0,-3.0103,-36.4475 0/0:19:19,0:19:750:0:0:0,-5.71957,-67.8198 0/0:8:8,0:8:326:0:0:0,-2.40824,-29.7099 dDocent_Contig_1296 49 . T A 77.1978 . AB=0.0980392;ABP=217.731;AC=1;AF=0.125;AN=8;AO=15;CIGAR=1X;DP=360;DPB=360;DPRA=2.21739;EPP=35.5824;EPPR=588.521;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=604;QR=13609;RO=345;RPL=0;RPP=35.5824;RPPR=588.521;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=345;SRP=752.168;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:153:138,15:138:5443:15:604:-8.6406,0,-443.675 0/0:81:81,0:81:3231:0:0:0,-24.3834,-290.849 0/0:86:86,0:86:3366:0:0:0,-25.8886,-303.004 0/0:40:40,0:40:1569:0:0:0,-12.0412,-141.451 dDocent_Contig_1297 27 . T A 295.923 . AB=0.138158;ABP=175.871;AC=2;AF=0.25;AN=8;AO=23;CIGAR=1M1X9M;DP=221;DPB=220;DPRA=0;EPP=52.9542;EPPR=406.904;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=885;QR=7327;RO=186;RPL=0;RPP=52.9542;RPPR=406.904;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=186;SRP=406.904;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:69:67,0,2:67:2647:0,2:0,81:0,-20.169,-237.981,-13.0853,-231.301,-230.699 0|1:79:63,4,11:63:2479:4,11:160,433:-16.6495,-22.433,-225.15,0,-190.734,-200.603 0|1:55:41,5,9:41:1608:5,9:176,331:-14.7184,-12.7451,-143.494,0,-117.953,-129.561 0|0:18:15,2,1:15:593:2,1:81,40:-2.16701,0,-48.1948,-3.38902,-45.5015,-51.8807 dDocent_Contig_1298 21 . G T 2840.23 . AB=0.41129;ABP=19.9618;AC=4;AF=0.5;AN=8;AO=102;CIGAR=1X;DP=248;DPB=248;DPRA=0;EPP=224.5;EPPR=309.188;GTI=0;LEN=1;MEANALT=1.5;MQM=58.3529;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4058;QR=5656;RO=141;RPL=0;RPP=224.5;RPPR=309.188;RPR=102;RUN=1;SAF=102;SAP=224.5;SAR=0;SRF=141;SRP=309.188;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:99:63,32:63:2522:32:1286:-86.8229,0,-198.122 0/1:86:43,43:43:1727:43:1685:-123.242,0,-129.755 0/1:38:19,18:19:762:18:725:-54.0288,0,-57.3548 0/1:25:16,9:16:645:9:362:-25.4184,0,-50.8572 dDocent_Contig_1300 23 . G A 10988.9 . AB=0.787671;ABP=317.844;AC=4;AF=0.5;AN=8;AO=345;CIGAR=1X;DP=438;DPB=438;DPRA=0;EPP=752.168;EPPR=204.957;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=2.77556e-17;PAIRED=0.988406;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=13734;QR=3685;RO=93;RPL=0;RPP=752.168;RPPR=204.957;RPR=345;RUN=1;SAF=345;SAP=752.168;SAR=0;SRF=93;SRP=204.957;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:183:41,142:41:1635:142:5651:-453.317,0,-92.2883 0/1:156:22,134:22:856:134:5332:-432.769,0,-30.3801 0/1:67:21,46:21:832:46:1856:-147.074,0,-55.0245 0/1:32:9,23:9:362:23:895:-71.2191,0,-23.3114 dDocent_Contig_1301 61 . A G 757.12 . AB=0.283186;ABP=49.1493;AC=4;AF=0.5;AN=8;AO=32;CIGAR=1X;DP=113;DPB=113;DPRA=0;EPP=72.4974;EPPR=178.9;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.90625;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1263;QR=3241;RO=81;RPL=32;RPP=72.4974;RPPR=178.9;RPR=0;RUN=1;SAF=32;SAP=72.4974;SAR=0;SRF=81;SRP=178.9;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:48:33,15:33:1317:15:582:-38.2598,0,-104.335 0/1:32:21,11:21:854:11:438:-30.1421,0,-67.5373 0/1:25:20,5:20:793:5:203:-11.1273,0,-64.1617 0/1:8:7,1:7:277:1:40:-1.58744,0,-22.8899 dDocent_Contig_1302 1 . N G 110.966 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.586;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=119;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:119:-11.095,-0.90309,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_1303 36 . G C 95.4783 . AB=0.121951;ABP=104.805;AC=1;AF=0.125;AN=8;AO=10;CIGAR=1X;DP=255;DPB=255;DPRA=1.42197;EPP=24.725;EPPR=535.021;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=390;QR=9406;RO=245;RPL=0;RPP=24.725;RPPR=535.021;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=245;SRP=535.021;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:113:113,0:113:4369:0:0:0,-34.0164,-393.218 0/1:82:72,10:72:2771:10:390:-10.7697,0,-224.842 0/0:38:38,0:38:1424:0:0:0,-11.4391,-128.418 0/0:22:22,0:22:842:0:0:0,-6.62266,-76.0898 dDocent_Contig_1304 10 . T G 6739.06 . AB=0.13948;ABP=480.555;AC=1;AF=0.125;AN=8;AO=59;CIGAR=2X;DP=423;DPB=423;DPRA=0;EPP=131.127;EPPR=324.388;GTI=0;LEN=1;MEANALT=2.25;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2281;QR=5867;RO=148;RPL=0;RPP=131.127;RPPR=324.388;RPR=59;RUN=1;SAF=59;SAP=131.127;SAR=0;SRF=148;SRP=324.388;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:155:75,10,69:75:2989:10,69:385,2727:-201.82,-192.791,-435.917,0,-214.54,-225.374 0|0:166:57,33,76:57:2232:33,76:1276,3068:-235.757,-148.137,-321.702,0,-78.725,-160.63 0|0:50:11,5,34:11:444:5,34:193,1345:-107.376,-94.8393,-129.937,0,-20.7698,-26.3783 1|0:52:5,11,36:5:202:11,36:427,1428:-134.443,-100.873,-114.216,-18.4081,0,-24.2292 dDocent_Contig_1305 18 . T C 4289.21 . AB=0.306968;ABP=174.867;AC=4;AF=0.5;AN=8;AO=163;CIGAR=1X;DP=531;DPB=531;DPRA=0;EPP=356.96;EPPR=802.112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6593;QR=14764;RO=368;RPL=0;RPP=356.96;RPPR=802.112;RPR=163;RUN=1;SAF=163;SAP=356.96;SAR=0;SRF=368;SRP=802.112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:182:133,49:133:5283:49:1972:-122.881,0,-420.533 0/1:124:97,27:97:3899:27:1097:-61.6844,0,-313.563 0/1:105:64,41:64:2588:41:1659:-117.921,0,-201.432 0/1:120:74,46:74:2994:46:1865:-131.924,0,-233.41 dDocent_Contig_1306 1 . N G 110.968 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.586;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=119;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:119:-11.0952,-0.90309,0 ./.:.:.:.:.:.:.:. dDocent_Contig_1307 108 . T G 183.174 . AB=0.22449;ABP=35.3165;AC=1;AF=0.125;AN=8;AO=12;CIGAR=1X;DP=106;DPB=106;DPRA=2.92593;EPP=29.068;EPPR=207.129;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=408;QR=3231;RO=94;RPL=0;RPP=29.068;RPPR=207.129;RPR=12;RUN=1;SAF=0;SAP=29.068;SAR=12;SRF=0;SRP=207.129;SRR=94;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:49:38,11:38:1303:11:374:-19.2382,0,-102.82 0/0:30:29,1:29:997:1:34:0,-5.63199,-86.6427 0/0:18:18,0:18:627:0:0:0,-5.41854,-56.7568 0/0:9:9,0:9:304:0:0:0,-2.70927,-27.6886 dDocent_Contig_1308 66 . G C 1046.56 . AB=0.279503;ABP=71.0003;AC=3;AF=0.375;AN=8;AO=50;CIGAR=1X;DP=221;DPB=221;DPRA=0;EPP=111.584;EPPR=374.332;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1915;QR=6423;RO=171;RPL=50;RPP=111.584;RPPR=374.332;RPR=0;RUN=1;SAF=50;SAP=111.584;SAR=0;SRF=171;SRP=374.332;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:84:62,22:62:2361:22:844:-50.994,0,-187.417 0/1:57:39,18:39:1439:18:695:-45.7251,0,-112.627 0/0:60:55,5:55:2048:5:181:0,-1.42112,-167.916 0/1:20:15,5:15:575:5:195:-11.9036,0,-46.0718 dDocent_Contig_1310 23 . G A 3351.42 . AB=0.385852;ABP=38.2077;AC=4;AF=0.5;AN=8;AO=120;CIGAR=1X;DP=311;DPB=311;DPRA=0;EPP=263.587;EPPR=417.762;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4813;QR=7660;RO=191;RPL=0;RPP=263.587;RPPR=417.762;RPR=120;RUN=1;SAF=120;SAP=263.587;SAR=0;SRF=191;SRP=417.762;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:104:67,37:67:2680:37:1504:-104.291,0,-210.014 0/1:124:74,50:74:2968:50:2006:-143.403,0,-229.876 0/1:51:38,13:38:1534:13:515:-31.3418,0,-122.945 0/1:32:12,20:12:478:20:788:-61.5964,0,-33.7355 dDocent_Contig_1311 19 . T A 272.323 . AB=0.136364;ABP=205.155;AC=3;AF=0.375;AN=8;AO=27;CIGAR=1X2M1X;DP=251;DPB=251;DPRA=0;EPP=38.4777;EPPR=489.42;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=0.888889;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1034;QR=8742;RO=224;RPL=0;RPP=61.6401;RPPR=489.42;RPR=27;RUN=1;SAF=24;SAP=38.4777;SAR=3;SRF=224;SRP=489.42;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:75:72,3:72:2803:3:111:0,-12.2233,-242.055 0|1:66:54,12:54:2099:12:451:-21.0618,0,-169.245 0|1:56:49,7:49:1926:7:272:-7.98635,0,-156.696 0|1:54:49,5:49:1914:5:200:-2.1243,0,-156.224 dDocent_Contig_1312 8 . G A 109.681 . AB=0.0555556;ABP=126.543;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X3M1X1M1X;DP=327;DPB=327;DPRA=0.694301;EPP=16.0391;EPPR=641.423;GTI=0;LEN=1;MEANALT=2.5;MQM=37.6667;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=229;QR=11418;RO=294;RPL=0;RPP=16.0391;RPPR=641.423;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=294;SRP=641.423;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:72:57,10,4:57:2240:10,4:394,153:-11.8889,0,-181.267,-17.7267,-172.956,-200.795 0|0:143:133,8,0:133:5149:8,0:315,0:0,-17.1746,-437.698,-40.037,-440.106,-463.005 0|0:62:58,2,2:58:2227:2,2:80,76:0,-11.5991,-193.826,-11.7891,-188.753,-194.006 0|0:50:46,3,0:46:1802:3,0:119,0:0,-5.14036,-152.397,-13.8474,-153.3,-162.044 dDocent_Contig_1313 9 . G A 8754.69 . AB=0.715068;ABP=149.653;AC=6;AF=0.75;AN=8;AO=261;CIGAR=1X5M;DP=365;DPB=365;DPRA=0;EPP=569.765;EPPR=107.241;GTI=0;LEN=1;MEANALT=2.75;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=9889;QR=1835;RO=48;RPL=0;RPP=569.765;RPPR=107.241;RPR=261;RUN=1;SAF=261;SAP=569.765;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:138:12,36,89:12:462:36,89:1405,3370:-350.224,-238.338,-265.435,-77.5676,0,-88.7073 0|1:120:24,9,86:24:933:9,86:351,3284:-262.206,-240.58,-314.543,0,-47.8202,-50.7817 0|1:64:10,4,50:10:372:4,50:157,1870:-150.09,-140.186,-169.427,0,-17.5121,-15.3792 1|1:43:2,4,36:2:68:4,36:153,1365:-118.377,-106.424,-110.733,-7.06541,0,-1.72977 dDocent_Contig_1314 44 . G A 276.61 . AB=0.163265;ABP=99.53;AC=1;AF=0.125;AN=8;AO=17;CIGAR=1X;DP=514;DPB=514;DPRA=0.489855;EPP=39.9253;EPPR=1047.77;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=685;QR=19795;RO=497;RPL=0;RPP=39.9253;RPPR=1047.77;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=497;SRP=1082.23;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:162:162,0:162:6480:0:0:0,-48.7669,-582.924 0/0:183:183,0:183:7290:0:0:0,-55.0885,-655.737 0/1:98:82,16:82:3254:16:645:-28.8828,0,-263.426 0/0:71:70,1:70:2771:1:40:0,-17.3774,-245.509 dDocent_Contig_1315 163 . C T 4860.86 . AB=0.729032;ABP=73.6322;AC=5;AF=0.625;AN=8;AO=154;CIGAR=1X;DP=199;DPB=199;DPRA=0;EPP=337.417;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.967532;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6076;QR=1760;RO=45;RPL=154;RPP=337.417;RPPR=100.727;RPR=0;RUN=1;SAF=0;SAP=337.417;SAR=154;SRF=0;SRP=100.727;SRR=45;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:56:23,33:23:924:33:1304:-100.762,0,-66.6077 1/1:44:3,41:3:119:41:1633:-136.102,-2.15082,0 0/1:60:9,51:9:320:51:1987:-160.967,0,-11.0645 0/1:39:10,29:10:397:29:1152:-92.2214,0,-24.3481 dDocent_Contig_1316 20 . T G 896.868 . AB=0.171429;ABP=298.393;AC=4;AF=0.5;AN=8;AO=54;CIGAR=1X;DP=315;DPB=315;DPRA=0;EPP=120.27;EPPR=527.167;GTI=0;LEN=1;MEANALT=1;MQM=59.9444;MQMR=59.9847;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=0.942529;PAO=0;PQA=0;PQR=0;PRO=0;QA=2096;QR=10330;RO=261;RPL=0;RPP=120.27;RPPR=569.765;RPR=54;RUN=1;SAF=54;SAP=120.27;SAR=0;SRF=256;SRP=527.167;SRR=5;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:98:81,17:81:3181:17:645:-28.8691,0,-256.864 0/1:70:60,10:60:2371:10:398:-15.1047,0,-192.478 0/1:121:98,23:98:3899:23:898:-44.7049,0,-314.481 0/1:26:22,4:22:879:4:155:-6.49758,0,-71.5944 dDocent_Contig_1317 110 . C T 90.0069 . AB=0.194444;ABP=32.2045;AC=2;AF=0.25;AN=8;AO=7;CIGAR=1X;DP=110;DPB=110;DPRA=0.486486;EPP=18.2106;EPPR=226.672;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=240;QR=3336;RO=103;RPL=0;RPP=18.2106;RPPR=226.672;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=226.672;SRR=103;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:20,5:20:694:5:171:-8.20098,0,-55.2578 0/0:65:65,0:65:2062:0:0:0,-19.5669,-185.842 0/1:11:9,2:9:274:2:69:-3.24133,0,-21.646 0/0:9:9,0:9:306:0:0:0,-2.70927,-27.8705 dDocent_Contig_1318 49 . C T 675.543 . AB=0.185185;ABP=165.71;AC=3;AF=0.375;AN=8;AO=35;CIGAR=1X;DP=258;DPB=258;DPRA=0.913043;EPP=79.0118;EPPR=478.602;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1405;QR=8816;RO=223;RPL=0;RPP=79.0118;RPPR=478.602;RPR=35;RUN=1;SAF=35;SAP=79.0118;SAR=0;SRF=223;SRP=487.249;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:97:73,24:73:2872:24:968:-58.2186,0,-229.391 0/0:69:69,0:69:2732:0:0:0,-20.7711,-245.992 0/1:56:48,8:48:1885:8:314:-11.7658,0,-152.992 0/1:36:33,3:33:1327:3:123:-0.627708,0,-108.857 dDocent_Contig_1319 11 . A C 80.1859 . AB=0.139535;ABP=51.5402;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X;DP=134;DPB=134;DPRA=1.85106;EPP=22.5536;EPPR=274.444;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=356;QR=4998;RO=125;RPL=0;RPP=22.5536;RPPR=274.444;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=125;SRP=274.444;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:43:37,6:37:1488:6:239:-8.93939,0,-121.217 0/0:44:41,3:41:1640:3:117:0,-2.33562,-136.918 0/0:28:28,0:28:1110:0:0:0,-8.42884,-100.185 0/0:19:19,0:19:760:0:0:0,-5.71957,-68.7225 dDocent_Contig_1320 28 . A G 34.1592 . AB=0.136364;ABP=28.2783;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=136;DPB=136;DPRA=0.619048;EPP=5.18177;EPPR=264.179;GTI=0;LEN=1;MEANALT=1;MQM=58.25;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.25;PAIREDR=0.977273;PAO=0;PQA=0;PQR=0;PRO=0;QA=162;QR=5324;RO=132;RPL=0;RPP=11.6962;RPPR=289.645;RPR=4;RUN=1;SAF=3;SAP=5.18177;SAR=1;SRF=129;SRP=264.179;SRR=3;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:32:32,0:32:1295:0:0:0,-9.63296,-116.812 0/0:52:52,0:52:2115:0:0:0,-15.6536,-190.517 0/0:30:29,1:29:1157:1:41:0,-4.93633,-100.317 0/1:22:19,3:19:757:3:121:-4.6376,0,-61.8294 dDocent_Contig_1321 22 . T C 5496.75 . AB=0.535088;ABP=6.66752;AC=4;AF=0.5;AN=8;AO=183;CIGAR=1X;DP=342;DPB=342;DPRA=0;EPP=400.39;EPPR=346.103;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7304;QR=6358;RO=158;RPL=0;RPP=400.39;RPPR=346.103;RPR=183;RUN=1;SAF=183;SAP=400.39;SAR=0;SRF=158;SRP=346.103;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:120:48,71:48:1928:71:2808:-216.641,0,-137.532 0/1:136:60,76:60:2396:76:3064:-234.889,0,-174.84 0/1:48:29,19:29:1182:19:756:-53.9076,0,-92.2018 0/1:38:21,17:21:852:17:676:-49.727,0,-65.5514 dDocent_Contig_1322 31 . A G 3489.68 . AB=0.0744681;ABP=150.855;AC=1;AF=0.125;AN=8;AO=7;CIGAR=11M1D1M1X3M;DP=207;DPB=198.529;DPRA=0;EPP=18.2106;EPPR=94.2121;GTI=0;LEN=1;MEANALT=3.5;MQM=60;MQMR=60;NS=4;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=256;QR=1630;RO=42;RPL=0;RPP=18.2106;RPPR=94.2121;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:75:11,0,28,18,15:11:428:0,28,18,15:0,1081,709,558:-108.616,-111.928,-147.103,-23.1562,-58.3323,-49.9034,-53.5977,-88.7739,0,-83.3554,-66.2738,-101.449,-12.6803,-43.1199,-96.9331 0|0:70:21,3,33,4,8:21:814:3,33,4,8:107,1247,161,314:-95.8654,-93.4689,-159.44,0,-58.1568,-56.9398,-88.9158,-147.073,-53.6026,-154.587,-76.3603,-134.518,-41.0478,-129.965,-140.828 0|0:38:9,0,26,3,0:9:352:0,26,3,0:0,1016,119,0:-80.8051,-83.5143,-112.455,0,-28.9366,-21.1099,-73.7181,-102.659,-19.1396,-101.756,-83.5143,-112.455,-28.9366,-102.659,-112.455 1|0:24:1,4,19,0,0:1:36:4,19,0,0:149,733,0,0:-69.1711,-57.2768,-59.0088,-9.27258,0,-6.48794,-69.4721,-60.213,-12.2075,-72.4085,-69.4721,-60.213,-12.2075,-72.4085,-72.4085 dDocent_Contig_1323 57 . A G 109.339 . AB=0.117647;ABP=132.532;AC=1;AF=0.125;AN=8;AO=20;CIGAR=1X;DP=344;DPB=344;DPRA=0.769231;EPP=46.4397;EPPR=706.567;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=781;QR=12351;RO=324;RPL=20;RPP=46.4397;RPPR=706.567;RPR=0;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=324;SRP=706.567;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:102:90,12:90:3395:12:469:-11.8542,0,-274.929 0/0:104:104,0:104:4012:0:0:0,-31.3071,-361.099 0/0:61:56,5:56:2114:5:191:0,-0.806272,-172.9 0/0:77:74,3:74:2830:3:121:0,-11.8991,-243.556 dDocent_Contig_1324 19 . C A 1305.56 . AB=0.259259;ABP=111.745;AC=4;AF=0.5;AN=8;AO=56;CIGAR=1X;DP=216;DPB=216;DPRA=0;EPP=124.613;EPPR=350.446;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2219;QR=6457;RO=160;RPL=0;RPP=124.613;RPPR=350.446;RPR=56;RUN=1;SAF=56;SAP=124.613;SAR=0;SRF=160;SRP=350.446;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:43:38,5:38:1522:5:204:-5.79974,0,-124.274 0/1:70:51,19:51:2062:19:770:-48.5477,0,-164.685 0/1:62:41,21:41:1659:21:804:-53.9944,0,-130.865 0/1:41:30,11:30:1214:11:441:-27.7038,0,-97.1887 dDocent_Contig_1325 75 . G T 247.288 . AB=0.323529;ABP=12.2071;AC=1;AF=0.125;AN=8;AO=11;CIGAR=1X;DP=116;DPB=116;DPRA=1.2439;EPP=26.8965;EPPR=231.015;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=395;QR=3976;RO=105;RPL=11;RPP=26.8965;RPPR=231.015;RPR=0;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=105;SRP=231.015;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:34:23,11:23:841:11:395:-25.6496,0,-65.7634 0/0:38:38,0:38:1448:0:0:0,-11.4391,-130.6 0/0:15:15,0:15:568:0:0:0,-4.51545,-51.4586 0/0:29:29,0:29:1119:0:0:0,-8.72987,-101.011 dDocent_Contig_1326 12 . C T 501.868 . AB=0.461538;ABP=3.51141;AC=1;AF=0.125;AN=8;AO=18;CIGAR=1X;DP=144;DPB=144;DPRA=1.11429;EPP=42.0968;EPPR=276.616;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=698;QR=4880;RO=126;RPL=0;RPP=42.0968;RPPR=276.616;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=126;SRP=276.616;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:40:40,0:40:1565:0:0:0,-12.0412,-141.109 0/1:39:21,18:21:820:18:698:-51.4087,0,-62.3797 0/0:32:32,0:32:1255:0:0:0,-9.63296,-113.233 0/0:33:33,0:33:1240:0:0:0,-9.93399,-111.867 dDocent_Contig_1327 7 . G T 2238.91 . AB=0.21;ABP=222.155;AC=4;AF=0.5;AN=8;AO=63;CIGAR=1X4M;DP=300;DPB=300;DPRA=0;EPP=139.813;EPPR=322.217;GTI=0;LEN=1;MEANALT=2.25;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.984127;PAIREDR=0.938776;PAO=0;PQA=0;PQR=0;PRO=0;QA=2344;QR=4968;RO=147;RPL=0;RPP=139.813;RPPR=322.217;RPR=63;RUN=1;SAF=63;SAP=139.813;SAR=0;SRF=147;SRP=322.217;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:93:34,33,26:34:1172:33,26:1230,972:-90.4564,0,-85.2407,-21.1089,-15.5801,-108.459 0|1:84:39,27,18:39:1324:27,18:1017,695:-71.5922,0,-99.2017,-26.2485,-50.2347,-128.169 0|1:79:47,20,11:47:1604:20,11:753,397:-47.5759,0,-124.124,-29.3352,-97.7503,-156.152 0|1:44:27,9,8:27:868:9,8:340,280:-19.756,0,-67.2273,-5.12433,-47.1576,-72.6325 dDocent_Contig_1328 17 . A T 3951.07 . AB=0.129808;ABP=250.6;AC=0;AF=0;AN=8;AO=27;CIGAR=1M3I1X3M1X;DP=208;DPB=286;DPRA=0;EPP=61.6401;EPPR=115.927;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1079;QR=2072;RO=52;RPL=0;RPP=61.6401;RPPR=115.927;RPR=27;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:79:19,15,45:19:756:15,45:604,1780:-140.755,-96.6909,-154.421,0,-12.4582,-48.696 0|0:52:22,5,25:22:875:5,25:199,974:-73.4157,-63.6509,-134.192,0,-55.6559,-64.5162 0|0:56:5,3,48:5:203:3,48:118,1888:-153.777,-145.576,-161.416,0,-7.04879,-2.30082 0|0:21:6,4,11:6:238:4,11:158,420:-32.6308,-21.4317,-39.8248,0,-6.59182,-16.2816 dDocent_Contig_1329 35 . G C 572.228 . AB=0.362069;ABP=12.5947;AC=2;AF=0.25;AN=8;AO=21;CIGAR=1X;DP=109;DPB=109;DPRA=1.13725;EPP=48.6112;EPPR=194.1;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=849;QR=3541;RO=88;RPL=0;RPP=48.6112;RPPR=194.1;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=88;SRP=194.1;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:38:38,0:38:1529:0:0:0,-11.4391,-137.848 0/1:43:26,17:26:1048:17:686:-49.1235,0,-81.6644 0/1:15:11,4:11:436:4:163:-10.543,0,-35.0746 0/0:13:13,0:13:528:0:0:0,-3.91339,-47.8671 dDocent_Contig_1330 40 . T A 338.549 . AB=0.342105;ABP=11.239;AC=1;AF=0.125;AN=8;AO=16;CIGAR=1X;DP=138;DPB=138;DPRA=0.816667;EPP=37.7539;EPPR=267.93;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=629;QR=4881;RO=122;RPL=0;RPP=37.7539;RPPR=267.93;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=122;SRP=267.93;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:40:40,0:40:1582:0:0:0,-12.0412,-142.615 0/1:38:25,13:25:1017:13:513:-35.0767,0,-80.3827 0/0:39:37,2:37:1469:2:76:0,-4.52591,-125.242 0/0:21:20,1:20:813:1:40:0,-2.32595,-69.4895 dDocent_Contig_1331 15 . C T 44.6949 . AB=0.107143;ABP=78.0812;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=239;DPB=239;DPRA=0.918033;EPP=16.0391;EPPR=508.963;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=243;QR=9355;RO=233;RPL=0;RPP=16.0391;RPPR=508.963;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=233;SRP=508.963;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:56:50,6:50:2029:6:243:-5.39029,0,-165.931 0/0:64:64,0:64:2568:0:0:0,-19.2659,-231.249 0/0:69:69,0:69:2747:0:0:0,-20.7711,-247.346 0/0:50:50,0:50:2011:0:0:0,-15.0515,-181.18 dDocent_Contig_1332 11 . C G 426.527 . AB=0.222222;ABP=63.329;AC=1;AF=0.125;AN=8;AO=20;CIGAR=1X;DP=243;DPB=243;DPRA=1.76471;EPP=46.4397;EPPR=487.249;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=785;QR=8846;RO=223;RPL=0;RPP=46.4397;RPPR=487.249;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=223;SRP=487.249;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:73:73,0:73:2920:0:0:0,-21.9752,-262.9 0/1:90:70,20:70:2711:20:785:-43.8745,0,-217.011 0/0:46:46,0:46:1849:0:0:0,-13.8474,-166.618 0/0:34:34,0:34:1366:0:0:0,-10.235,-123.198 dDocent_Contig_1333 9 . G A 2832.24 . AB=0.477273;ABP=3.99733;AC=4;AF=0.5;AN=8;AO=105;CIGAR=1X;DP=220;DPB=220;DPRA=0;EPP=231.015;EPPR=252.73;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3930;QR=4387;RO=115;RPL=0;RPP=231.015;RPPR=252.73;RPR=105;RUN=1;SAF=105;SAP=231.015;SAR=0;SRF=115;SRP=252.73;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:72:39,33:39:1487:33:1267:-92.648,0,-112.431 0/1:43:27,16:27:1017:16:602:-41.5729,0,-78.8915 0/1:67:45,22:45:1727:22:844:-56.1133,0,-135.519 0/1:38:4,34:4:156:34:1217:-98.3755,0,-2.97815 dDocent_Contig_1334 1 . N G 76.8898 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=4.89285;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:81:-7.68573,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_1335 8 . G A 7478.77 . AB=0.437202;ABP=24.5559;AC=4;AF=0.5;AN=8;AO=275;CIGAR=1X;DP=629;DPB=629;DPRA=0;EPP=600.165;EPPR=769.54;GTI=0;LEN=1;MEANALT=1.25;MQM=59.8727;MQMR=60;NS=4;NUMALT=1;ODDS=2.77556e-17;PAIRED=1;PAIREDR=0.994334;PAO=0;PQA=0;PQR=0;PRO=0;QA=10483;QR=13560;RO=353;RPL=0;RPP=600.165;RPPR=769.54;RPR=275;RUN=1;SAF=275;SAP=600.165;SAR=0;SRF=353;SRP=769.54;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:182:82,100:82:3162:100:3809:-286.682,0,-229.941 0/1:157:100,57:100:3843:57:2170:-148.267,0,-298.712 0/1:152:102,50:102:3930:50:1927:-127.916,0,-308.037 0/1:138:69,68:69:2625:68:2577:-190.502,0,-194.81 dDocent_Contig_1336 31 . C T 93.9922 . AB=0.333333;ABP=5.9056;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=76;DPB=76;DPRA=0.5625;EPP=11.6962;EPPR=159.356;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=154;QR=2835;RO=72;RPL=0;RPP=11.6962;RPPR=159.356;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=72;SRP=159.356;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:27:27,0:27:1048:0:0:0,-8.12781,-94.5984 0/0:23:23,0:23:906:0:0:0,-6.92369,-81.8479 0/0:14:14,0:14:557:0:0:0,-4.21442,-50.4716 0/1:12:8,4:8:324:4:154:-10.6211,0,-25.917 dDocent_Contig_1337 8 . A G 7656.34 . AB=0.536383;ABP=8.54056;AC=4;AF=0.5;AN=8;AO=258;CIGAR=1X2M1X2M1X;DP=481;DPB=481;DPRA=0;EPP=563.25;EPPR=417.762;GTI=0;LEN=1;MEANALT=2.75;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=0.98062;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=10075;QR=7344;RO=191;RPL=0;RPP=563.25;RPPR=417.762;RPR=258;RUN=1;SAF=258;SAP=563.25;SAR=0;SRF=191;SRP=417.762;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:119:63,56,0,0:63:2424:56,0,0:2196,0,0:-162.017,0,-182.532,-180.982,-199.39,-379.983,-180.982,-199.39,-379.983,-379.983 0|1:182:65,114,2,0:65:2511:114,2,0:4440,79,0:-345.327,0,-171.9,-358.394,-199.716,-564.017,-364.894,-206.217,-564.619,-571.12 0|1:102:34,55,12,0:34:1291:55,12,0:2140,473,0:-165.644,0,-89.3058,-136.964,-66.9436,-239.207,-175.879,-105.862,-242.819,-281.734 0|1:78:29,33,11,4:29:1118:33,11,4:1299,424,161:-98.1355,0,-81.8654,-72.0577,-56.9902,-160.544,-93.5951,-78.5285,-150.585,-184.19 dDocent_Contig_1338 98 . N T 1556.47 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=60;CIGAR=1X;DP=61;DPB=61;DPRA=0;EPP=133.299;EPPR=0;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1711;QR=0;RO=0;RPL=60;RPP=133.299;RPPR=0;RPR=0;RUN=1;SAF=60;SAP=133.299;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:37:0,36:0:0:36:1031:-93.0061,-10.8371,0 1/1:3:0,3:0:0:3:84:-7.83919,-0.90309,0 1/1:14:0,14:0:0:14:396:-35.9164,-4.21442,0 1/1:7:0,7:0:0:7:200:-18.2833,-2.10721,0 dDocent_Contig_1339 82 . T C 87.2631 . AB=0.140845;ABP=82.5596;AC=1;AF=0.125;AN=8;AO=10;CIGAR=1X;DP=217;DPB=217;DPRA=1.4589;EPP=24.725;EPPR=448.162;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=341;QR=6242;RO=205;RPL=10;RPP=24.725;RPPR=448.162;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=205;SRP=448.162;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:71:61,10:61:1872:10:341:-9.6471,0,-147.372 0/0:92:91,0:91:2770:0:0:0,-27.3937,-249.415 0/0:47:46,0:46:1402:0:0:0,-13.8474,-126.38 0/0:7:7,0:7:198:0:0:0,-2.10721,-18.0994 dDocent_Contig_1340 23 . C T 4624.59 . AB=0.410891;ABP=30.8739;AC=4;AF=0.5;AN=8;AO=166;CIGAR=1X;DP=404;DPB=404;DPRA=0;EPP=363.475;EPPR=519.821;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=58.0336;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.571429;PAO=0;PQA=0;PQR=0;PRO=0;QA=6540;QR=9480;RO=238;RPL=0;RPP=363.475;RPPR=519.821;RPR=166;RUN=1;SAF=166;SAP=363.475;SAR=0;SRF=238;SRP=519.821;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:159:123,36:123:4896:36:1414:-79.6604,0,-372.618 0/1:97:34,63:34:1371:63:2486:-194.7,0,-89.3906 0/1:116:69,47:69:2736:47:1855:-132.251,0,-211.437 0/1:32:12,20:12:477:20:785:-61.3371,0,-33.6451 dDocent_Contig_1341 193 . C G 454.474 . AB=0.179856;ABP=126.753;AC=3;AF=0.375;AN=8;AO=25;CIGAR=1X;DP=167;DPB=167;DPRA=1.65476;EPP=57.2971;EPPR=311.359;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=997;QR=5716;RO=142;RPL=25;RPP=57.2971;RPPR=311.359;RPR=0;RUN=1;SAF=0;SAP=57.2971;SAR=25;SRF=0;SRP=311.359;SRR=142;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:65:47,18:47:1892:18:716:-45.1978,0,-150.908 0/0:28:28,0:28:1143:0:0:0,-8.42884,-103.146 0/1:45:41,4:41:1625:4:159:-1.14561,0,-132.927 0/1:29:26,3:26:1056:3:122:-2.64262,0,-86.5947 dDocent_Contig_1342 64 . T A 1566.82 . AB=0.030303;ABP=66.2462;AC=0;AF=0;AN=8;AO=3;CIGAR=5M2X1M;DP=95;DPB=96.625;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=3.5;MQM=12.3333;MQMR=0;NS=4;NUMALT=4;ODDS=0;PAIRED=0.333333;PAIREDR=0;PAO=1;PQA=31.6;PQR=31.6;PRO=1;QA=37;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:32:0,4,0,0,27:0:0:4,0,0,27:156,0,0,471:-38.1435,-26.2252,-25.021,-38.1435,-26.2252,-38.1435,-38.1435,-26.2252,-38.1435,-38.1435,-11.794,0,-11.794,-11.794,-3.66619 0|0:10:0,0,0,2,8:0:0:0,0,2,8:0,0,31,174:-14.1487,-14.1487,-14.1487,-14.1487,-14.1487,-14.1487,-12.4631,-12.4631,-12.4631,-11.861,-2.40824,-2.40824,-2.40824,-0.581231,0 0|0:33:0,2,3,1,24:0:0:2,3,1,24:76,117,6,634:-54.3293,-48.4874,-47.8853,-45.3832,-39.54,-44.4801,-54.316,-48.4744,-45.3703,-54.015,-8.95409,-3.1098,0,-8.97023,-1.72937 0|0:20:0,2,0,0,17:0:0:2,0,0,17:70,0,0,597:-52.7358,-47.2535,-46.6515,-52.7358,-47.2535,-52.7358,-52.7358,-47.2535,-52.7358,-52.7358,-5.41918,0,-5.41918,-5.41918,-0.301673 dDocent_Contig_1343 7 . C T 4379.8 . AB=0.411616;ABP=29.8795;AC=4;AF=0.5;AN=8;AO=163;CIGAR=1X;DP=396;DPB=396;DPRA=0;EPP=356.96;EPPR=321.974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=56.0429;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.896996;PAO=0;PQA=0;PQR=0;PRO=0;QA=6240;QR=8789;RO=233;RPL=0;RPP=356.96;RPPR=508.963;RPR=163;RUN=1;SAF=163;SAP=356.96;SAR=0;SRF=209;SRP=321.974;SRR=24;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:123:73,50:73:2750:50:1926:-136.556,0,-203.257 0/1:103:68,35:68:2583:35:1346:-90.4196,0,-194.262 0/1:122:72,50:72:2725:50:1914:-135.779,0,-206.669 0/1:48:20,28:20:731:28:1054:-80.7151,0,-44.4549 dDocent_Contig_1345 15 . A T 1354.31 . AB=0.190813;ABP=237.997;AC=2;AF=0.25;AN=8;AO=54;CIGAR=1M1X1M5D2M1X1M1X7M1X3M1X4M2I12M;DP=283;DPB=274.78;DPRA=0;EPP=120.27;EPPR=259.244;GTI=0;LEN=1;MEANALT=8;MQM=60;MQMR=60;NS=4;NUMALT=4;ODDS=5.55112e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2003;QR=4607;RO=118;RPL=0;RPP=120.27;RPPR=259.244;RPR=54;RUN=1;SAF=54;SAP=120.27;SAR=0;SRF=118;SRP=259.244;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:100:29,24,20,8,11:29:1125:24,20,8,11:894,763,323,435:-64.4439,0,-85.2053,-10.5784,-29.8365,-96.9895,-46.544,-65.8011,-76.381,-136.568,-37.3739,-56.6312,-67.2109,-103.177,-126.495 0|1:99:47,19,9,5,0:47:1854:19,9,5,0:694,320,201,0:-42.5481,0,-146.843,-30.6265,-126.494,-180.477,-40.1287,-135.997,-166.621,-191.185,-56.6965,-152.562,-183.186,-192.69,-209.255 0|0:55:35,7,9,0,0:35:1361:7,9,0,0:265,347,0,0:-17.9624,-6.7765,-116.513,0,-90.1258,-109.139,-28.4985,-118.621,-111.848,-140.343,-28.4985,-118.621,-111.848,-140.343,-140.343 0|0:29:7,4,6,5,4:7:267:4,6,5,4:150,221,201,156:-15.9629,-5.78295,-26.4857,0,-9.62047,-20.1005,-1.49663,-11.1184,-5.33488,-21.9009,-5.24301,-14.8639,-9.0807,-10.5788,-25.9467 dDocent_Contig_1346 35 . G A 1731.79 . AB=0.32243;ABP=61.6198;AC=4;AF=0.5;AN=8;AO=69;CIGAR=1X;DP=214;DPB=214;DPRA=0;EPP=152.842;EPPR=317.874;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2675;QR=5815;RO=145;RPL=0;RPP=152.842;RPPR=317.874;RPR=69;RUN=1;SAF=69;SAP=152.842;SAR=0;SRF=145;SRP=317.874;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:79:45,34:45:1823:34:1360:-98.8729,0,-140.493 0/1:90:80,10:80:3179:10:369:-6.4505,0,-259.079 0/1:33:9,24:9:367:24:905:-71.8121,0,-23.4613 0/1:12:11,1:11:446:1:41:-0.482207,0,-36.8827 dDocent_Contig_1348 36 . A G 34.4701 . AB=0.1;ABP=86.3948;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X;DP=139;DPB=139;DPRA=3.23077;EPP=22.5536;EPPR=285.302;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=366;QR=5166;RO=130;RPL=0;RPP=22.5536;RPPR=285.302;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=130;SRP=285.302;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:60:54,6:54:2146:6:245:-4.36767,0,-175.255 0/0:42:40,2:40:1598:2:81:0,-4.95753,-136.362 0/0:24:23,1:23:895:1:40:0,-3.22904,-76.8585 0/0:13:13,0:13:527:0:0:0,-3.91339,-47.7757 dDocent_Contig_1350 77 . G A 60.1474 . AB=0.107527;ABP=127.438;AC=2;AF=0.25;AN=8;AO=11;CIGAR=1X;DP=150;DPB=150;DPRA=1.01802;EPP=26.8965;EPPR=304.845;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=436;QR=5469;RO=139;RPL=11;RPP=26.8965;RPPR=304.845;RPR=0;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=139;SRP=304.845;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:66:60,6:60:2383:6:236:-1.7417,0,-194.755 0/0:37:37,0:37:1454:0:0:0,-11.1381,-131.111 0/1:27:23,4:23:883:4:160:-6.65562,0,-71.6542 0/0:20:19,1:19:749:1:40:0,-2.02492,-63.7366 dDocent_Contig_1351 57 . C A 101.446 . AB=0.1875;ABP=30.1537;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=83;DPB=83;DPRA=1.88235;EPP=16.0391;EPPR=170.214;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.948052;PAO=0;PQA=0;PQR=0;PRO=0;QA=226;QR=3091;RO=77;RPL=6;RPP=16.0391;RPPR=170.214;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=77;SRP=170.214;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:32:26,6:26:1036:6:226:-11.0654,0,-83.8964 0/0:35:35,0:35:1405:0:0:0,-10.536,-126.697 0/0:11:11,0:11:447:0:0:0,-3.31133,-40.5861 0/0:5:5,0:5:203:0:0:0,-1.50515,-18.6531 dDocent_Contig_1352 13 . T C 316.908 . AB=0.15625;ABP=134.384;AC=1;AF=0.125;AN=8;AO=20;CIGAR=1X;DP=212;DPB=212;DPRA=4.57143;EPP=46.4397;EPPR=419.933;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=787;QR=7532;RO=192;RPL=0;RPP=46.4397;RPPR=419.933;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=192;SRP=419.933;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:128:108,20:108:4188:20:787:-32.6116,0,-338.38 0/0:51:51,0:51:2032:0:0:0,-15.3525,-183.067 0/0:27:27,0:27:1073:0:0:0,-8.12781,-96.8554 0/0:6:6,0:6:239:0:0:0,-1.80618,-21.885 dDocent_Contig_1354 18 . T A 1235.07 . AB=0.0736842;ABP=152.979;AC=0;AF=0;AN=8;AO=7;CIGAR=1X3M1X4M;DP=210;DPB=210;DPRA=0;EPP=18.2106;EPPR=298.331;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=281;QR=5386;RO=136;RPL=0;RPP=18.2106;RPPR=298.331;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=136;SRP=298.331;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:95:60,0,7,28:60:2387:0,7,28:0,281,1118:-74.0128,-92.0746,-288.615,-68.92,-265.461,-263.354,0,-196.539,-173.384,-188.11 0|0:68:38,16,0,14:38:1501:16,0,14:632,0,564:-40.5642,0,-118.689,-52.0034,-123.506,-175.513,-5.51358,-77.0175,-129.025,-124.811 0|0:21:18,0,0,2:18:708:0,0,2:0,0,75:-0.906647,-6.32519,-64.656,-6.32519,-64.656,-64.656,0,-58.5142,-58.5142,-57.9121 0|0:26:20,0,0,6:20:790:0,0,6:0,0,226:-12.8709,-18.8915,-83.9115,-18.8915,-83.9115,-83.9115,0,-65.4005,-65.4005,-63.5943 dDocent_Contig_1355 113 . A G 72.1564 . AB=0.153846;ABP=57.1301;AC=3;AF=0.375;AN=8;AO=10;CIGAR=1X;DP=95;DPB=95;DPRA=0;EPP=24.725;EPPR=187.585;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=353;QR=3034;RO=85;RPL=0;RPP=24.725;RPPR=187.585;RPR=10;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=187.585;SRR=85;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:25,3:25:899:3:106:-1.46026,0,-72.8021 0/0:43:41,2:41:1454:2:69:0,-6.39163,-124.603 0/1:16:12,4:12:431:4:142:-8.31279,0,-34.3142 0/1:8:7,1:7:250:1:36:-1.19004,0,-20.4384 dDocent_Contig_1357 55 . T C 97.18 . AB=0.126761;ABP=88.9211;AC=2;AF=0.25;AN=8;AO=9;CIGAR=1X;DP=100;DPB=100;DPRA=2.44828;EPP=22.5536;EPPR=200.614;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=364;QR=3553;RO=91;RPL=9;RPP=22.5536;RPPR=200.614;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=91;SRP=200.614;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:41:37,4:37:1470:4:164:-2.80767,0,-120.212 0/1:30:25,5:25:963:5:200:-9.34843,0,-77.9364 0/0:15:15,0:15:583:0:0:0,-4.51545,-52.8067 0/0:14:14,0:14:537:0:0:0,-4.21442,-48.6706 dDocent_Contig_1358 22 . T C 9444.31 . AB=0.388954;ABP=94.1586;AC=4;AF=0.5;AN=8;AO=331;CIGAR=9M1X1M;DP=851;DPB=839.364;DPRA=0;EPP=721.768;EPPR=969.392;GTI=0;LEN=1;MEANALT=3.25;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.99117;PAO=0;PQA=0;PQR=0;PRO=0;QA=13191;QR=17508;RO=453;RPL=0;RPP=721.768;RPPR=986.687;RPR=331;RUN=1;SAF=331;SAP=721.768;SAR=0;SRF=451;SRP=969.392;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:229:95,16,118:95:3675:16,118:621,4701:-358.507,-336.09,-633.138,0,-250.852,-266.348 0|1:346:159,39,144:159:6160:39,144:1540,5744:-425.169,-346.322,-840.628,0,-379.335,-462.7 0|1:160:117,3,40:117:4525:3,40:111,1599:-96.5164,-122.66,-493.424,0,-362.614,-359.652 0|1:116:82,4,29:82:3148:4,29:159,1147:-69.7275,-81.3203,-338.514,0,-245.328,-249.69 dDocent_Contig_1359 8 . G A 12724.8 . AB=0.507361;ABP=3.4259;AC=4;AF=0.5;AN=8;AO=448;CIGAR=1X;DP=883;DPB=883;DPRA=0;EPP=975.83;EPPR=947.601;GTI=0;LEN=1;MEANALT=1;MQM=59.9978;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=17150;QR=16563;RO=435;RPL=0;RPP=975.83;RPPR=947.601;RPR=448;RUN=1;SAF=448;SAP=975.83;SAR=0;SRF=435;SRP=947.601;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:285:122,163:122:4624:163:6259:-477.442,0,-330.417 0/1:334:165,169:165:6292:169:6484:-482.926,0,-465.668 0/1:141:81,60:81:3126:60:2269:-161.98,0,-239.047 0/1:123:67,56:67:2521:56:2138:-155.623,0,-190.069 dDocent_Contig_1360 49 . T C 102.778 . AB=0.166667;ABP=26.1727;AC=2;AF=0.25;AN=8;AO=4;CIGAR=3M1X2M;DP=65;DPB=64.5;DPRA=0.48;EPP=11.6962;EPPR=128.956;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.982759;PAO=0;PQA=0;PQR=0;PRO=0;QA=151;QR=2282;RO=58;RPL=0;RPP=11.6962;RPPR=128.956;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:16:13,3,0:13:507:3,0:122,0:-6.55601,0,-41.1583,-10.4694,-42.0614,-52.1277 0|0:25:25,0,0:25:975:0,0:0,0:0,-7.52575,-88.0548,-7.52575,-88.0548,-88.0548 0|1:14:11,0,3:11:440:0,3:0,111:-6.13512,-9.44645,-45.7153,0,-36.6449,-35.7418 0|1:10:9,0,1:9:360:0,1:0,40:-0.985379,-3.69465,-33.35,0,-30.0549,-29.7539 dDocent_Contig_1361 149 . A G 87.3022 . AB=0.178571;ABP=28.1373;AC=1;AF=0.125;AN=8;AO=19;CIGAR=1X;DP=308;DPB=308;DPRA=0.617284;EPP=44.2683;EPPR=630.566;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=704;QR=10934;RO=289;RPL=0;RPP=44.2683;RPPR=630.566;RPR=19;RUN=1;SAF=0;SAP=44.2683;SAR=19;SRF=0;SRP=630.566;SRR=289;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:108:108,0:108:3980:0:0:0,-32.5112,-358.235 0/0:131:121,10:121:4662:10:376:0,-5.24826,-385.37 0/0:41:37,4:37:1390:4:128:0,-0.516278,-113.536 0/1:28:23,5:23:902:5:200:-9.95108,0,-73.0621 dDocent_Contig_1362 7 . T C 2556.82 . AB=0.559748;ABP=7.9405;AC=4;AF=0.5;AN=8;AO=89;CIGAR=2X7M;DP=159;DPB=159.444;DPRA=0;EPP=196.271;EPPR=133.299;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3399;QR=2302;RO=60;RPL=0;RPP=196.271;RPPR=133.299;RPR=89;RUN=1;SAF=89;SAP=196.271;SAR=0;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:58:17,3,33,3:17:653:3,33,3:118,1274,122:-99.5059,-94.9162,-147.616,0,-43.8883,-43.6618,-94.5587,-138.455,-43.5301,-147.259 0|1:55:16,0,39,0:16:618:0,39,0:0,1487,0:-117.548,-122.365,-173.123,0,-51.1426,-39.4024,-122.365,-173.123,-51.1426,-173.123 0|1:27:19,1,7,0:19:719:1,7,0:40,263,0:-15.8055,-18.227,-76.8673,0,-55.6229,-56.8118,-21.5251,-77.1683,-58.919,-80.4642 0|1:19:8,0,10,0:8:312:0,10,0:0,375,0:-28.312,-30.7203,-56.3736,0,-25.6645,-22.6542,-30.7203,-56.3736,-25.6645,-56.3736 dDocent_Contig_1363 191 . A T 171.124 . AB=0.461538;ABP=3.17734;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=98;DPB=98;DPRA=0.458824;EPP=16.0391;EPPR=202.786;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=243;QR=3680;RO=92;RPL=6;RPP=16.0391;RPPR=202.786;RPR=0;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=202.786;SRR=92;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:29:29,0:29:1169:0:0:0,-8.72987,-105.489 0/1:13:7,6:7:266:6:243:-18.3342,0,-20.3821 0/0:36:36,0:36:1444:0:0:0,-10.8371,-130.211 0/0:20:20,0:20:801:0:0:0,-6.0206,-72.4019 dDocent_Contig_1364 25 . A G 645.558 . AB=0.183246;ABP=169.463;AC=4;AF=0.5;AN=8;AO=35;CIGAR=1X;DP=191;DPB=191;DPRA=0;EPP=79.0118;EPPR=341.76;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1401;QR=6248;RO=156;RPL=0;RPP=79.0118;RPPR=341.76;RPR=35;RUN=1;SAF=35;SAP=79.0118;SAR=0;SRF=156;SRP=341.76;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:58:50,8:50:2002:8:326:-12.2501,0,-162.904 0/1:37:27,10:27:1088:10:390:-24.3138,0,-87.0677 0/1:70:60,10:60:2389:10:401:-15.3746,0,-194.087 0/1:26:19,7:19:769:7:284:-18.1066,0,-61.7035 dDocent_Contig_1365 209 . N G 77.8292 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=4.89285;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:82:-7.77968,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_1366 17 . A T 1039.71 . AB=0.38;ABP=15.518;AC=4;AF=0.5;AN=8;AO=38;CIGAR=2M1X;DP=100;DPB=105;DPRA=0;EPP=85.5263;EPPR=126.784;GTI=0;LEN=1;MEANALT=1.75;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1526;QR=2258;RO=57;RPL=0;RPP=85.5263;RPPR=126.784;RPR=38;RUN=1;SAF=38;SAP=85.5263;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:26:15,0,11:15:588:0,11:0,441:-32.2176,-36.7331,-85.0739,0,-48.7375,-45.4261 0|1:26:16,1,9:16:637:1,9:40,349:-23.84,-25.3602,-77.5157,0,-49.153,-49.739 0|1:35:17,3,14:17:671:3,14:109,573:-42.2573,-38.4791,-92.7863,0,-46.3878,-51.0711 0|1:13:9,0,4:9:362:0,4:0,163:-11.145,-13.8543,-43.6827,0,-30.2338,-29.0297 dDocent_Contig_1368 9 . T G 1343.27 . AB=0.149163;ABP=705.42;AC=4;AF=0.5;AN=8;AO=98;CIGAR=1X;DP=657;DPB=657;DPRA=0;EPP=215.815;EPPR=1216.86;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.998211;PAO=0;PQA=0;PQR=0;PRO=0;QA=3737;QR=21409;RO=559;RPL=0;RPP=215.815;RPPR=1216.86;RPR=98;RUN=1;SAF=98;SAP=215.815;SAR=0;SRF=559;SRP=1216.86;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:182:154,28:154:5876:28:1081:-42.8071,0,-474.005 0/1:212:185,27:185:7062:27:1027:-28.9189,0,-571.638 0/1:141:128,13:128:4923:13:498:-2.72225,0,-400.648 0/1:122:92,30:92:3548:30:1131:-65.3613,0,-282.715 dDocent_Contig_1369 19 . T C 1123.73 . AB=0.286624;ABP=65.0978;AC=4;AF=0.5;AN=8;AO=45;CIGAR=1X;DP=157;DPB=157;DPRA=0;EPP=100.727;EPPR=246.215;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1819;QR=4465;RO=112;RPL=0;RPP=100.727;RPPR=246.215;RPR=45;RUN=1;SAF=45;SAP=100.727;SAR=0;SRF=112;SRP=246.215;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:26,10:26:1019:10:408:-26.2435,0,-81.1614 0/1:42:32,10:32:1282:10:404:-24.0763,0,-103.002 0/1:50:39,11:39:1578:11:447:-25.5335,0,-127.197 0/1:29:15,14:15:586:14:560:-42.0096,0,-44.3441 dDocent_Contig_1370 23 . A G 727.94 . AB=0.36;ABP=15.7786;AC=1;AF=0.125;AN=8;AO=28;CIGAR=1X;DP=281;DPB=281;DPRA=1.06618;EPP=63.8115;EPPR=552.393;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.2292;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1111;QR=10022;RO=253;RPL=0;RPP=63.8115;RPPR=552.393;RPR=28;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=253;SRP=552.393;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:100:100,0:100:3991:0:0:0,-30.103,-354.222 0/1:75:48,27:48:1909:27:1070:-74.0158,0,-149.435 0/0:70:69,1:69:2685:1:41:0,-16.9775,-237.701 0/0:36:36,0:36:1437:0:0:0,-10.8371,-126.064 dDocent_Contig_1371 7 . A T 11813.3 . AB=0.665557;ABP=146.093;AC=4;AF=0.5;AN=8;AO=400;CIGAR=1X1M1D4M1X6M;DP=601;DPB=572.214;DPRA=0;EPP=871.599;EPPR=426.447;GTI=0;LEN=1;MEANALT=2.5;MQM=59.9675;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=15184;QR=7684;RO=195;RPL=0;RPP=871.599;RPPR=426.447;RPR=400;RUN=1;SAF=400;SAP=871.599;SAR=0;SRF=195;SRP=426.447;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:221:74,145:74:2891:145:5489:-427.697,0,-194.019 0|1:166:49,117:49:1947:117:4447:-350.327,0,-125.475 0|1:123:40,82:40:1582:82:3108:-242.817,0,-105.566 0|1:91:32,56:32:1264:56:2140:-165.982,0,-87.2301 dDocent_Contig_1372 76 . A G 69.3166 . AB=0.272727;ABP=7.94546;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=40;DPB=40;DPRA=1.13793;EPP=9.52472;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=123;QR=1482;RO=37;RPL=3;RPP=9.52472;RPPR=83.3548;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:10:10,0:10:391:0:0:0,-3.0103,-35.5412 0/0:13:13,0:13:524:0:0:0,-3.91339,-47.5073 0/1:11:8,3:8:326:3:123:-8.15346,0,-26.3985 0/0:6:6,0:6:241:0:0:0,-1.80618,-22.0652 dDocent_Contig_1373 13 . A G 329.024 . AB=0.148649;ABP=161.704;AC=3;AF=0.375;AN=8;AO=22;CIGAR=1X;DP=214;DPB=214;DPRA=0.747475;EPP=50.7827;EPPR=419.933;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=879;QR=7694;RO=192;RPL=0;RPP=50.7827;RPPR=419.933;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=192;SRP=419.933;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:87:72,15:72:2915:15:597:-27.88,0,-236.246 0/1:48:44,4:44:1732:4:160:-0.334573,0,-141.641 0/0:66:66,0:66:2647:0:0:0,-19.868,-238.351 0/1:13:10,3:10:400:3:122:-7.4591,0,-32.4459 dDocent_Contig_1374 1 . N T 77.8292 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=4.89285;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:82:-7.77968,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_1375 15 . T A 4508.95 . AB=0.114286;ABP=500.526;AC=0;AF=0;AN=8;AO=44;CIGAR=7M1X3M;DP=385;DPB=362;DPRA=0;EPP=98.5551;EPPR=246.215;GTI=0;LEN=1;MEANALT=4.75;MQM=59.8864;MQMR=58.7857;NS=4;NUMALT=3;ODDS=1.11022e-16;PAIRED=1;PAIREDR=0.839286;PAO=0;PQA=0;PQR=0;PRO=0;QA=1703;QR=4360;RO=112;RPL=0;RPP=98.5551;RPPR=246.215;RPR=44;RUN=1;SAF=44;SAP=98.5551;SAR=0;SRF=112;SRP=246.215;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:106:28,1,43,19:28:1098:1,43,19:39,1602,708:-122.7,-127.923,-213.003,0,-82.1732,-72.435,-73.1965,-155.371,-27.4474,-152.858 0|0:92:26,1,41,6:26:1012:1,41,6:39,1554,239:-119.572,-124.193,-207.066,0,-79.9721,-70.8359,-107.717,-187.686,-63.4961,-189.086 0|0:123:50,7,47,10:50:1939:7,47,10:269,1782,391:-131.004,-123.971,-281.164,0,-137.216,-145.151,-113.908,-251.126,-127.153,-270.199 0|0:64:8,12,25,9:8:311:12,25,9:456,903,365:-83.1088,-48.1192,-70.067,-11.8355,0,-29.8684,-55.4104,-43.5723,-7.2873,-78.2618 dDocent_Contig_1376 12 . C T 398.699 . AB=0.233766;ABP=50.4161;AC=3;AF=0.375;AN=8;AO=18;CIGAR=1X;DP=90;DPB=90;DPRA=1.97436;EPP=42.0968;EPPR=159.356;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=732;QR=2924;RO=72;RPL=0;RPP=42.0968;RPPR=159.356;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=72;SRP=159.356;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:13:13,0:13:531:0:0:0,-3.91339,-48.1364 0/1:29:19,10:19:769:10:407:-28.2605,0,-60.7996 0/1:34:30,4:30:1218:4:163:-4.82341,0,-99.6519 0/1:14:10,4:10:406:4:162:-10.7525,0,-32.686 dDocent_Contig_1377 75 . G C 11332.9 . AB=0.661261;ABP=128.373;AC=4;AF=0.5;AN=8;AO=367;CIGAR=1X;DP=555;DPB=555;DPRA=0;EPP=799.941;EPPR=409.076;GTI=0;LEN=1;MEANALT=1.25;MQM=59.9946;MQMR=60;NS=4;NUMALT=1;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=14508;QR=7298;RO=187;RPL=367;RPP=799.941;RPPR=409.076;RPR=0;RUN=1;SAF=367;SAP=799.941;SAR=0;SRF=187;SRP=409.076;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:155:48,106:48:1849:106:4207:-331.927,0,-119.944 0/1:168:73,95:73:2845:95:3741:-286.142,0,-205.582 0/1:143:52,91:52:2069:91:3584:-279.557,0,-143.35 0/1:89:14,75:14:535:75:2976:-241.155,0,-21.6932 dDocent_Contig_1378 108 . A T 644.844 . AB=0.461538;ABP=3.51141;AC=4;AF=0.5;AN=8;AO=26;CIGAR=1X;DP=62;DPB=62;DPRA=0;EPP=59.4686;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=898;QR=1198;RO=36;RPL=0;RPP=59.4686;RPPR=81.1833;RPR=26;RUN=1;SAF=0;SAP=59.4686;SAR=26;SRF=0;SRP=81.1833;SRR=36;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:7:0,7:0:0:7:245:-22.3911,-2.10721,0 0/1:24:10,14:10:342:14:486:-36.8458,0,-23.8857 0/1:15:11,4:11:375:4:132:-7.69095,0,-29.5635 0/0:16:15,1:15:481:1:35:0,-1.31785,-40.0974 dDocent_Contig_1379 58 . C T 235.202 . AB=0.19403;ABP=57.4916;AC=1;AF=0.125;AN=8;AO=13;CIGAR=1X;DP=181;DPB=181;DPRA=1.76316;EPP=31.2394;EPPR=367.818;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=492;QR=6757;RO=168;RPL=13;RPP=31.2394;RPPR=367.818;RPR=0;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=168;SRP=367.818;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:67:54,13:54:2159:13:492:-24.441,0,-174.319 0/0:65:65,0:65:2627:0:0:0,-19.5669,-236.549 0/0:30:30,0:30:1201:0:0:0,-9.0309,-108.364 0/0:19:19,0:19:770:0:0:0,-5.71957,-69.6203 dDocent_Contig_1380 107 . N T 330.781 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=14;CIGAR=1X;DP=14;DPB=14;DPRA=0;EPP=33.4109;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=0.928571;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=351;QR=0;RO=0;RPL=0;RPP=33.4109;RPPR=0;RPR=14;RUN=1;SAF=0;SAP=33.4109;SAR=14;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:64:-5.97223,-0.90309,0 1/1:5:0,5:0:0:5:160:-14.7163,-1.50515,0 1/1:4:0,4:0:0:4:112:-10.3569,-1.20412,0 1/1:2:0,2:0:0:2:15:-1.425,-0.60206,0 dDocent_Contig_1381 30 . G A 4591.89 . AB=0.355789;ABP=88.8132;AC=4;AF=0.5;AN=8;AO=169;CIGAR=1X;DP=475;DPB=475;DPRA=0;EPP=369.989;EPPR=667.481;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.982249;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6742;QR=12208;RO=306;RPL=0;RPP=369.989;RPPR=667.481;RPR=169;RUN=1;SAF=169;SAP=369.989;SAR=0;SRF=306;SRP=667.481;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:100:63,37:63:2492:37:1485:-103.796,0,-194.308 0/1:96:62,34:62:2480:34:1313:-89.5289,0,-194.434 0/1:165:106,59:106:4238:59:2366:-163.418,0,-331.702 0/1:114:75,39:75:2998:39:1578:-107.936,0,-235.591 dDocent_Contig_1382 32 . G C 2150.17 . AB=0.384236;ABP=26.6398;AC=4;AF=0.5;AN=8;AO=78;CIGAR=1X;DP=203;DPB=203;DPRA=0;EPP=172.385;EPPR=274.444;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3115;QR=4930;RO=125;RPL=0;RPP=172.385;RPPR=274.444;RPR=78;RUN=1;SAF=78;SAP=172.385;SAR=0;SRF=125;SRP=274.444;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:69:36,33:36:1405:33:1309:-97.2937,0,-105.939 0/1:87:59,28:59:2348:28:1120:-74.8884,0,-185.287 0/1:25:15,10:15:591:10:401:-28.923,0,-46.0007 0/1:22:15,7:15:586:7:285:-19.4017,0,-46.4537 dDocent_Contig_1383 139 . A G 36.1266 . AB=0.133333;ABP=38.0434;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=133;DPB=133;DPRA=0.546512;EPP=13.8677;EPPR=280.959;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.7891;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=189;QR=4841;RO=128;RPL=0;RPP=13.8677;RPPR=280.959;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=280.959;SRR=128;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:17:16,1:16:609:1:39:0,-1.22095,-51.2504 0/0:43:43,0:43:1652:0:0:0,-12.9443,-148.452 0/1:30:26,4:26:977:4:150:-4.83421,0,-79.2063 0/0:43:43,0:43:1603:0:0:0,-12.9443,-144.536 dDocent_Contig_1384 98 . N T 431.15 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=14;CIGAR=1X;DP=14;DPB=14;DPRA=0;EPP=33.4109;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=458;QR=0;RO=0;RPL=14;RPP=33.4109;RPPR=0;RPR=0;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:6:0,6:0:0:6:197:-18.0529,-1.80618,0 1/1:2:0,2:0:0:2:63:-5.98364,-0.60206,0 1/1:3:0,3:0:0:3:98:-9.14405,-0.90309,0 1/1:3:0,3:0:0:3:100:-9.33066,-0.90309,0 dDocent_Contig_1385 10 . T C 3807.65 . AB=0.308176;ABP=155.464;AC=4;AF=0.5;AN=8;AO=147;CIGAR=2X;DP=477;DPB=477;DPRA=0;EPP=322.217;EPPR=717.425;GTI=0;LEN=1;MEANALT=1.25;MQM=59.7551;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5878;QR=13255;RO=329;RPL=0;RPP=322.217;RPPR=717.425;RPR=147;RUN=1;SAF=147;SAP=322.217;SAR=0;SRF=329;SRP=717.425;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:128:83,45:83:3339:45:1780:-121.879,0,-262.029 0|1:147:95,52:95:3829:52:2109:-145.667,0,-300.349 0|1:107:69,38:69:2778:38:1522:-104.951,0,-217.915 0|1:95:82,12:82:3309:12:467:-13.7573,0,-269.244 dDocent_Contig_1386 22 . A G 736.821 . AB=0.269565;ABP=56.0509;AC=4;AF=0.5;AN=8;AO=31;CIGAR=1X;DP=115;DPB=115;DPRA=0;EPP=70.3259;EPPR=185.414;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.97619;PAO=0;PQA=0;PQR=0;PRO=0;QA=1248;QR=3388;RO=84;RPL=0;RPP=70.3259;RPPR=185.414;RPR=31;RUN=1;SAF=31;SAP=70.3259;SAR=0;SRF=84;SRP=185.414;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:40:30,10:30:1212:10:403:-24.5887,0,-97.3116 0/1:45:31,14:31:1256:14:566:-37.7359,0,-99.7606 0/1:17:13,4:13:518:4:160:-9.66592,0,-41.8481 0/1:13:10,3:10:402:3:119:-7.18111,0,-32.6265 dDocent_Contig_1387 28 . T C 13043.1 . AB=0.572005;ABP=36.4708;AC=4;AF=0.5;AN=8;AO=425;CIGAR=1X;DP=743;DPB=743;DPRA=0;EPP=925.886;EPPR=693.539;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=17041;QR=12657;RO=318;RPL=0;RPP=925.886;RPPR=693.539;RPR=425;RUN=1;SAF=425;SAP=925.886;SAR=0;SRF=318;SRP=693.539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:240:72,168:72:2870:168:6762:-535.999,0,-186.147 0/1:221:96,125:96:3851:125:5023:-385.402,0,-280.054 0/1:167:90,77:90:3581:77:3066:-225.745,0,-272.035 0/1:115:60,55:60:2355:55:2190:-162.649,0,-177.475 dDocent_Contig_1389 85 . G A 146.549 . AB=0.35;ABP=6.91895;AC=2;AF=0.25;AN=8;AO=7;CIGAR=1X;DP=56;DPB=56;DPRA=0.555556;EPP=10.7656;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.285714;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=249;QR=1680;RO=49;RPL=7;RPP=18.2106;RPPR=109.412;RPR=0;RUN=1;SAF=6;SAP=10.7656;SAR=1;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:21:21,0:21:712:0:0:0,-6.32163,-64.3966 0/0:15:15,0:15:524:0:0:0,-4.51545,-47.4909 0/1:8:6,2:6:202:2:74:-4.61719,0,-16.1025 0/1:12:7,5:7:242:5:175:-12.4813,0,-18.5054 dDocent_Contig_1390 21 . G A 717.503 . AB=0.17316;ABP=217.347;AC=2;AF=0.25;AN=8;AO=49;CIGAR=1X;DP=556;DPB=556;DPRA=0.731801;EPP=109.412;EPPR=1103.95;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1948;QR=20075;RO=507;RPL=0;RPP=109.412;RPPR=1103.95;RPR=49;RUN=1;SAF=49;SAP=109.412;SAR=0;SRF=507;SRP=1103.95;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:174:174,0:174:6876:0:0:0,-52.3792,-618.562 0/1:168:134,34:134:5349:34:1355:-71.6293,0,-430.678 0/0:151:142,9:142:5601:9:358:0,-12.8741,-471.335 0/1:63:57,6:57:2249:6:235:-2.55475,0,-183.608 dDocent_Contig_1391 38 . T C 700.832 . AB=0.183099;ABP=188.809;AC=3;AF=0.375;AN=8;AO=41;CIGAR=1X;DP=306;DPB=306;DPRA=0;EPP=92.0407;EPPR=576.279;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.268293;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1605;QR=10516;RO=264;RPL=0;RPP=92.0407;RPPR=576.279;RPR=41;RUN=1;SAF=41;SAP=92.0407;SAR=0;SRF=264;SRP=576.279;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:85:76,9:76:3044:9:357:-6.90396,0,-248.452 0/0:93:91,2:91:3650:2:80:0,-20.404,-320.925 0/1:90:67,22:67:2641:22:853:-49.8714,0,-210.613 0/1:38:30,8:30:1181:8:315:-17.2744,0,-95.1275 dDocent_Contig_1392 77 . A G 68.3656 . AB=0.128571;ABP=86.8912;AC=1;AF=0.125;AN=8;AO=15;CIGAR=1X;DP=225;DPB=225;DPRA=2.79167;EPP=35.5824;EPPR=459.02;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=546;QR=8038;RO=210;RPL=15;RPP=35.5824;RPPR=459.02;RPR=0;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=210;SRP=459.02;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:93:89,4:89:3430:4:148:0,-14.3138,-295.147 0/1:70:61,9:61:2320:9:320:-8.05841,0,-187.945 0/0:24:24,0:24:901:0:0:0,-7.22472,-81.4042 0/0:38:36,2:36:1387:2:78:0,-4.03567,-117.709 dDocent_Contig_1393 12 . G C 851.799 . AB=0.150997;ABP=374.357;AC=2;AF=0.25;AN=8;AO=70;CIGAR=1X;DP=711;DPB=711;DPRA=0;EPP=155.013;EPPR=1394.92;GTI=0;LEN=1;MEANALT=1;MQM=49.0286;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.928571;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2840;QR=25576;RO=641;RPL=0;RPP=155.013;RPPR=1394.92;RPR=70;RUN=1;SAF=70;SAP=155.013;SAR=0;SRF=641;SRP=1394.92;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:187:182,5:182:7273:5:203:0,-42.9472,-640.86 0/1:236:199,37:199:7964:37:1511:-64.2504,0,-645.277 0/0:173:161,12:161:6425:12:481:0,-15.8412,-541.745 0/1:115:99,16:99:3914:16:645:-23.3732,0,-317.645 dDocent_Contig_1394 56 . T C 12932 . AB=0.516052;ABP=4.89259;AC=4;AF=0.5;AN=8;AO=434;CIGAR=1X;DP=841;DPB=841;DPRA=0;EPP=945.429;EPPR=886.8;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=17245;QR=14267;RO=407;RPL=434;RPP=945.429;RPPR=886.8;RPR=0;RUN=1;SAF=434;SAP=945.429;SAR=0;SRF=407;SRP=886.8;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:272:108,164:108:3782:164:6490:-501.945,0,-258.653 0/1:213:113,100:113:3957:100:3984:-294.431,0,-292.17 0/1:269:146,123:146:5203:123:4875:-357.665,0,-387.369 0/1:87:40,47:40:1325:47:1896:-144.649,0,-93.3323 dDocent_Contig_1395 107 . N T 186.875 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=6;CIGAR=1X;DP=6;DPB=6;DPRA=0;EPP=16.0391;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=197;QR=0;RO=0;RPL=0;RPP=16.0391;RPPR=0;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:5:0,5:0:0:5:164:-15.0838,-1.50515,0 1/1:1:0,1:0:0:1:33:-3.29913,-0.30103,0 dDocent_Contig_1396 9 . T G 1158.72 . AB=0.248804;ABP=117.558;AC=1;AF=0.125;AN=8;AO=52;CIGAR=1X;DP=514;DPB=514;DPRA=2.05574;EPP=115.927;EPPR=1004.06;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1995;QR=17659;RO=461;RPL=0;RPP=115.927;RPPR=1004.06;RPR=52;RUN=1;SAF=52;SAP=115.927;SAR=0;SRF=461;SRP=1004.06;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:209:156,52:156:5994:52:1995:-116.793,0,-476.404 0/0:106:106,0:106:4050:0:0:0,-31.9092,-364.59 0/0:100:100,0:100:3861:0:0:0,-30.103,-347.585 0/0:99:99,0:99:3754:0:0:0,-29.802,-337.966 dDocent_Contig_1397 17 . C T 3914.99 . AB=0.365039;ABP=64.554;AC=4;AF=0.5;AN=8;AO=142;CIGAR=1X;DP=389;DPB=389;DPRA=0;EPP=311.359;EPPR=539.364;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.983806;PAO=0;PQA=0;PQR=0;PRO=0;QA=5701;QR=9871;RO=247;RPL=0;RPP=311.359;RPPR=539.364;RPR=142;RUN=1;SAF=142;SAP=311.359;SAR=0;SRF=247;SRP=539.364;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:179:120,59:120:4781:59:2358:-158.484,0,-376.309 0/1:148:81,67:81:3250:67:2698:-198.382,0,-248.007 0/1:37:28,9:28:1114:9:365:-22.0767,0,-89.4051 0/1:25:18,7:18:726:7:280:-18.0458,0,-58.1378 dDocent_Contig_1398 96 . T C 82.1821 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=3;CIGAR=1X1M1X;DP=4;DPB=19.6667;DPRA=3;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=20;PQA=346;PQR=0;PRO=0;QA=89;QR=0;RO=0;RPL=3;RPP=9.52472;RPPR=0;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:1:0,0:0:0:0:0:0,0,0 .:.:.:.:.:.:.:. 1|1:3:0,3:0:0:3:89:-8.03726,-0.90309,0 .:.:.:.:.:.:.:. dDocent_Contig_1399 37 . G A 375.415 . AB=0.147059;ABP=186.947;AC=1;AF=0.125;AN=8;AO=25;CIGAR=1X;DP=551;DPB=551;DPRA=1.33858;EPP=57.2971;EPPR=1145.2;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=996;QR=20969;RO=526;RPL=0;RPP=57.2971;RPPR=1145.2;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=526;SRP=1145.2;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:158:158,0:158:6278:0:0:0,-47.5627,-564.769 0/1:170:145,25:145:5790:25:996:-38.7634,0,-469.728 0/0:166:166,0:166:6618:0:0:0,-49.971,-595.347 0/0:57:57,0:57:2283:0:0:0,-17.1587,-205.631 dDocent_Contig_1400 107 . N G 375.01 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=12;CIGAR=1X;DP=12;DPB=12;DPRA=0;EPP=29.068;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=11.8243;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=413;QR=0;RO=0;RPL=0;RPP=29.068;RPPR=0;RPR=12;RUN=1;SAF=0;SAP=29.068;SAR=12;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:12:0,12:0:0:12:413:-37.501,-3.61236,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_1401 9 . T C 824.526 . AB=0.272727;ABP=62.2323;AC=3;AF=0.375;AN=8;AO=36;CIGAR=1X;DP=148;DPB=148;DPRA=2.75;EPP=81.1833;EPPR=246.215;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1390;QR=4312;RO=112;RPL=0;RPP=81.1833;RPPR=246.215;RPR=36;RUN=1;SAF=36;SAP=81.1833;SAR=0;SRF=112;SRP=246.215;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:20,3:20:778:3:117:-3.98669,0,-63.4244 0/0:16:16,0:16:614:0:0:0,-4.81648,-55.5986 0/1:63:53,10:53:2047:10:386:-16.1311,0,-165.498 0/1:46:23,23:23:873:23:887:-66.3011,0,-65.0401 dDocent_Contig_1402 52 . T A 8112.29 . AB=0.455285;ABP=13.6911;AC=4;AF=0.5;AN=8;AO=280;CIGAR=1X;DP=615;DPB=615;DPRA=0;EPP=611.023;EPPR=728.282;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=11128;QR=13425;RO=334;RPL=280;RPP=611.023;RPPR=728.282;RPR=0;RUN=1;SAF=280;SAP=611.023;SAR=0;SRF=334;SRP=728.282;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:258:141,117:141:5695:117:4633:-339.221,0,-434.666 0/1:166:88,77:88:3519:77:3082:-227.384,0,-266.674 0/1:115:65,50:65:2605:50:1975:-143.321,0,-199.958 0/1:76:40,36:40:1606:36:1438:-106.793,0,-121.892 dDocent_Contig_1403 45 . A G 8679.31 . AB=0.812183;ABP=169.773;AC=5;AF=0.625;AN=8;AO=263;CIGAR=1X2M;DP=306;DPB=306;DPRA=0;EPP=574.108;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.988593;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=10345;QR=1450;RO=37;RPL=0;RPP=574.108;RPPR=83.3548;RPR=263;RUN=1;SAF=263;SAP=574.108;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:109:18,0,91:18:693:0,91:0,3588:-290.144,-295.563,-352.451,0,-57.2743,-29.8806 1|1:109:0,6,103:0:0:6,103:236,4093:-367.959,-348.546,-346.739,-31.0061,-11.1996,0 0|1:49:8,0,41:8:311:0,41:0,1574:-127.143,-129.551,-155.108,0,-25.944,-13.6017 0|1:39:11,0,28:11:446:0,28:0,1090:-86.6507,-89.962,-126.746,0,-37.1849,-28.756 dDocent_Contig_1404 26 . G T 819.185 . AB=0.0685484;ABP=403.997;AC=1;AF=0.125;AN=8;AO=17;CIGAR=2X;DP=277;DPB=277;DPRA=2.85057;EPP=39.9253;EPPR=463.362;GTI=0;LEN=1;MEANALT=2;MQM=53.1765;MQMR=60;NS=4;NUMALT=2;ODDS=2.77556e-17;PAIRED=0.823529;PAIREDR=0.919811;PAO=0;PQA=0;PQR=0;PRO=0;QA=676;QR=8324;RO=212;RPL=0;RPP=39.9253;RPPR=463.362;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=212;SRP=463.362;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:85:67,5,13:67:2654:5,13:201,499:-14.3111,-17.9061,-234.888,0,-201.872,-214.513 0|0:116:85,4,27:85:3310:4,27:159,1072:-58.7188,-72.4894,-343.294,0,-260.21,-263.901 0|1:47:32,8,7:32:1266:8,7:316,270:-12.8544,0,-101.805,-2.13687,-83.8749,-104.251 0|0:29:28,0,1:28:1094:0,1:0,41:0,-8.42884,-98.4161,-5.40885,-95.7302,-95.4291 dDocent_Contig_1405 41 . C A 331.129 . AB=0.10989;ABP=484.17;AC=2;AF=0.25;AN=8;AO=46;CIGAR=1X;DP=585;DPB=585;DPRA=1.00228;EPP=102.898;EPPR=1173.43;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1837;QR=21544;RO=539;RPL=0;RPP=102.898;RPPR=1173.43;RPR=46;RUN=1;SAF=46;SAP=102.898;SAR=0;SRF=539;SRP=1173.43;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:198:172,26:172:6877:26:1037:-34.0201,0,-559.001 0/0:146:146,0:146:5839:0:0:0,-43.9504,-525.304 0/1:166:152,14:152:6052:14:558:-0.589964,0,-494.476 0/0:75:69,6:69:2776:6:242:0,-0.420135,-227.783 dDocent_Contig_1406 98 . N A 2255.07 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=75;CIGAR=1X;DP=75;DPB=75;DPRA=0;EPP=165.871;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=2485;QR=0;RO=0;RPL=75;RPP=165.871;RPPR=0;RPR=0;RUN=1;SAF=75;SAP=165.871;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:19:0,19:0:0:19:604:-54.6617,-5.71957,0 1/1:34:0,34:0:0:34:1141:-102.991,-10.235,0 1/1:14:0,14:0:0:14:468:-42.4404,-4.21442,0 1/1:8:0,8:0:0:8:272:-24.8116,-2.40824,0 dDocent_Contig_1407 98 . N C 1539.78 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=51;CIGAR=1X;DP=51;DPB=51;DPRA=0;EPP=113.755;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1690;QR=0;RO=0;RPL=51;RPP=113.755;RPPR=0;RPR=0;RUN=1;SAF=51;SAP=113.755;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:17:0,17:0:0:17:573:-51.8903,-5.11751,0 1/1:22:0,22:0:0:22:732:-66.1903,-6.62266,0 1/1:9:0,9:0:0:9:283:-25.7785,-2.70927,0 1/1:3:0,3:0:0:3:102:-9.5168,-0.90309,0 dDocent_Contig_1408 13 . A C 1589.78 . AB=0.118469;ABP=1721.28;AC=4;AF=0.5;AN=8;AO=161;CIGAR=1X;DP=1359;DPB=1359;DPRA=0;EPP=352.617;EPPR=2554.49;GTI=0;LEN=1;MEANALT=2;MQM=58.2981;MQMR=59.4791;NS=4;NUMALT=1;ODDS=0;PAIRED=0.52795;PAIREDR=0.280851;PAO=0;PQA=0;PQR=0;PRO=0;QA=6427;QR=46854;RO=1175;RPL=0;RPP=352.617;RPPR=2554.49;RPR=161;RUN=1;SAF=161;SAP=352.617;SAR=0;SRF=1175;SRP=2554.49;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:397:349,42:349:13921:42:1692:-31.6181,0,-1114.53 0/1:369:319,41:319:12775:41:1613:-36.6268,0,-1040.02 0/1:425:362,57:362:14425:57:2284:-71.8018,0,-1170.63 0/1:168:145,21:145:5733:21:838:-24.4211,0,-461.934 dDocent_Contig_1409 49 . T C 4409.21 . AB=0.690821;ABP=68.4797;AC=4;AF=0.5;AN=8;AO=143;CIGAR=1X;DP=207;DPB=207;DPRA=0;EPP=313.531;EPPR=141.985;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5641;QR=2535;RO=64;RPL=0;RPP=313.531;RPPR=141.985;RPR=143;RUN=1;SAF=143;SAP=313.531;SAR=0;SRF=64;SRP=141.985;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:100:36,64:36:1458:64:2553:-199.81,0,-101.361 0/1:48:8,40:8:279:40:1549:-125.208,0,-10.9795 0/1:34:10,24:10:403:24:950:-75.5713,0,-26.3939 0/1:25:10,15:10:395:15:589:-45.8211,0,-28.3818 dDocent_Contig_1410 86 . A C 478.836 . AB=0.262626;ABP=51.4626;AC=3;AF=0.375;AN=8;AO=28;CIGAR=1X;DP=140;DPB=140;DPRA=0;EPP=63.8115;EPPR=244.044;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.963964;PAO=0;PQA=0;PQR=0;PRO=0;QA=964;QR=3798;RO=111;RPL=28;RPP=63.8115;RPPR=244.044;RPR=0;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=111;SRP=244.044;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:41:28,13:28:926:13:447:-28.2162,0,-71.2981 0/1:38:31,6:31:1072:6:207:-7.71978,0,-85.5712 0/0:41:39,2:39:1342:2:70:0,-5.69483,-114.429 0/1:20:13,7:13:458:7:240:-15.9143,0,-35.5339 dDocent_Contig_1411 114 . C G 2445.46 . AB=0.520408;ABP=3.71935;AC=4;AF=0.5;AN=8;AO=102;CIGAR=1X;DP=196;DPB=196;DPRA=0;EPP=224.5;EPPR=207.129;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.9787;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.914894;PAO=0;PQA=0;PQR=0;PRO=0;QA=3420;QR=3148;RO=94;RPL=0;RPP=224.5;RPPR=207.129;RPR=102;RUN=1;SAF=0;SAP=224.5;SAR=102;SRF=0;SRP=207.129;SRR=94;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:90:62,28:62:2122:28:896:-53.8394,0,-164.161 0/1:54:9,45:9:288:45:1529:-121.645,0,-9.97541 0/1:28:16,12:16:504:12:416:-29.3438,0,-37.2294 0/1:24:7,17:7:234:17:579:-45.2076,0,-14.1629 dDocent_Contig_1412 119 . G A 537.42 . AB=0.268519;ABP=53.2759;AC=2;AF=0.25;AN=8;AO=30;CIGAR=2X;DP=235;DPB=235;DPRA=0.577519;EPP=68.1545;EPPR=445.991;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1010;QR=6861;RO=204;RPL=0;RPP=68.1545;RPPR=445.991;RPR=30;RUN=1;SAF=0;SAP=68.1545;SAR=30;SRF=0;SRP=445.991;SRR=204;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:77:61,15:61:2049:15:505:-22.8059,0,-161.73 0|0:86:86,0:86:2892:0:0:0,-25.8886,-260.526 0|0:41:40,1:40:1342:1:34:0,-8.94332,-117.675 0|1:31:17,14:17:578:14:471:-33.3799,0,-43.0102 dDocent_Contig_1413 16 . T G 4878.87 . AB=0.790816;ABP=146.992;AC=4;AF=0.5;AN=8;AO=155;CIGAR=1X;DP=196;DPB=196;DPRA=0;EPP=339.589;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6127;QR=1602;RO=41;RPL=0;RPP=339.589;RPPR=92.0407;RPR=155;RUN=1;SAF=155;SAP=339.589;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:44:13,31:13:514:31:1219:-96.7358,0,-33.3627 0/1:66:12,54:12:473:54:2173:-175.874,0,-23.0524 0/1:60:7,53:7:273:53:2057:-167.246,0,-6.87264 0/1:26:9,17:9:342:17:678:-53.5211,0,-23.304 dDocent_Contig_1414 28 . T C 89.6532 . AB=0.175;ABP=39.7082;AC=2;AF=0.25;AN=8;AO=7;CIGAR=1X;DP=67;DPB=67;DPRA=1.48148;EPP=18.2106;EPPR=133.299;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.95;PAO=0;PQA=0;PQR=0;PRO=0;QA=253;QR=2215;RO=60;RPL=0;RPP=18.2106;RPPR=133.299;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:14,3:14:516:3:90:-3.27235,0,-41.6601 0/0:13:13,0:13:486:0:0:0,-3.91339,-44.0828 0/1:23:19,4:19:696:4:163:-8.13474,0,-56.0435 0/0:14:14,0:14:517:0:0:0,-4.21442,-46.8674 dDocent_Contig_1415 26 . C A 879.391 . AB=0.372093;ABP=15.2311;AC=1;AF=0.125;AN=8;AO=32;CIGAR=1X;DP=269;DPB=269;DPRA=1.40984;EPP=72.4974;EPPR=517.649;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1272;QR=9488;RO=237;RPL=0;RPP=72.4974;RPPR=517.649;RPR=32;RUN=1;SAF=32;SAP=72.4974;SAR=0;SRF=237;SRP=517.649;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:86:54,32:54:2185:32:1272:-88.8599,0,-170.925 0/0:103:103,0:103:4101:0:0:0,-31.0061,-369.057 0/0:63:63,0:63:2519:0:0:0,-18.9649,-226.847 0/0:17:17,0:17:683:0:0:0,-5.11751,-61.8006 dDocent_Contig_1416 1 . N G 397.478 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=11;CIGAR=1X;DP=11;DPB=11;DPRA=0;EPP=26.8965;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=419;QR=0;RO=0;RPL=0;RPP=26.8965;RPPR=0;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:82:-7.77968,-0.60206,0 1/1:5:0,5:0:0:5:204:-18.744,-1.50515,0 1/1:2:0,2:0:0:2:82:-7.77968,-0.60206,0 1/1:2:0,2:0:0:2:51:-4.83984,-0.60206,0 dDocent_Contig_1417 46 . G A 395.472 . AB=0.411765;ABP=5.30951;AC=1;AF=0.125;AN=8;AO=18;CIGAR=1X;DP=247;DPB=247;DPRA=0.843284;EPP=42.0968;EPPR=498.106;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=727;QR=9028;RO=228;RPL=0;RPP=42.0968;RPPR=498.106;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=228;SRP=498.106;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:88:88,0:88:3494:0:0:0,-26.4906,-314.501 0/0:79:75,4:75:2967:4:163:0,-8.72294,-252.072 0/0:46:46,0:46:1813:0:0:0,-13.8474,-163.384 0/1:34:19,14:19:754:14:564:-40.7691,0,-57.8433 dDocent_Contig_1419 50 . A G 31.4569 . AB=0.131579;ABP=47.8112;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=84;DPB=84;DPRA=2.47826;EPP=13.8677;EPPR=172.385;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=170;QR=2910;RO=78;RPL=5;RPP=13.8677;RPPR=172.385;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=78;SRP=172.385;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:34:34,0:34:1264:0:0:0,-10.235,-114.046 0/1:38:32,5:32:1197:5:170:-4.3671,0,-96.794 0/0:7:7,0:7:264:0:0:0,-2.10721,-24.1198 0/0:5:5,0:5:185:0:0:0,-1.50515,-17.0091 dDocent_Contig_1420 83 . C A 1154.81 . AB=0.289855;ABP=82.4107;AC=2;AF=0.25;AN=8;AO=71;CIGAR=1X;DP=423;DPB=423;DPRA=0;EPP=157.185;EPPR=765.197;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=59.7436;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.994302;PAO=0;PQA=0;PQR=0;PRO=0;QA=2326;QR=11808;RO=351;RPL=71;RPP=157.185;RPPR=765.197;RPR=0;RUN=1;SAF=71;SAP=157.185;SAR=0;SRF=351;SRP=765.197;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:112:66,46:66:2236:46:1544:-105.534,0,-167.796 0/1:95:81,14:81:2711:14:452:-12.3911,0,-212.213 0/0:136:128,7:128:4297:7:198:0,-22.6375,-368.865 0/0:80:76,4:76:2564:4:132:0,-11.876,-218.816 dDocent_Contig_1421 65 . A G 226.849 . AB=0.151515;ABP=107.438;AC=1;AF=0.125;AN=8;AO=15;CIGAR=1X;DP=321;DPB=321;DPRA=1.33784;EPP=35.5824;EPPR=665.309;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.996721;PAO=0;PQA=0;PQR=0;PRO=0;QA=593;QR=12018;RO=305;RPL=15;RPP=35.5824;RPPR=665.309;RPR=0;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=305;SRP=665.309;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:127:126,0:126:5012:0:0:0,-37.9298,-450.893 0/1:99:84,15:84:3271:15:593:-23.9068,0,-264.66 0/0:53:53,0:53:2100:0:0:0,-15.9546,-189.193 0/0:42:42,0:42:1635:0:0:0,-12.6433,-147.378 dDocent_Contig_1422 98 . N A 219.551 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=7;CIGAR=1X;DP=7;DPB=7;DPRA=0;EPP=18.2106;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=228;QR=0;RO=0;RPL=7;RPP=18.2106;RPPR=0;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:1:0,1:0:0:1:29:-2.89966,-0.30103,0 1/1:2:0,2:0:0:2:69:-6.55266,-0.60206,0 1/1:4:0,4:0:0:4:130:-12.022,-1.20412,0 dDocent_Contig_1423 42 . T A 17245.9 . AB=0.796188;ABP=522.686;AC=4;AF=0.5;AN=8;AO=543;CIGAR=1X;DP=682;DPB=682;DPRA=0;EPP=1182.12;EPPR=304.845;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=21511;QR=5523;RO=139;RPL=0;RPP=1182.12;RPPR=304.845;RPR=543;RUN=1;SAF=543;SAP=1182.12;SAR=0;SRF=139;SRP=304.845;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:185:39,146:39:1550:146:5831:-468.897,0,-84.047 0/1:214:47,167:47:1869:167:6697:-538.003,0,-103.997 0/1:151:32,119:32:1252:119:4669:-374.683,0,-67.4942 0/1:132:21,111:21:852:111:4314:-348.495,0,-37.2552 dDocent_Contig_1424 53 . G T 176.174 . AB=0.235294;ABP=23.7032;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X;DP=126;DPB=126;DPRA=1.37736;EPP=22.5536;EPPR=257.073;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.91453;PAO=0;PQA=0;PQR=0;PRO=0;QA=359;QR=4524;RO=117;RPL=9;RPP=22.5536;RPPR=257.073;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=117;SRP=257.073;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:26:26,0:26:1002:0:0:0,-7.82678,-90.4733 0/1:34:26,8:26:1014:8:319:-18.8393,0,-81.3164 0/0:39:38,1:38:1462:1:40:0,-7.74449,-127.835 0/0:27:27,0:27:1046:0:0:0,-8.12781,-94.4297 dDocent_Contig_1426 14 . T C 222.866 . AB=0.131783;ABP=154.929;AC=1;AF=0.125;AN=8;AO=24;CIGAR=1X;DP=451;DPB=451;DPRA=0.919149;EPP=55.1256;EPPR=930.229;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=975;QR=17134;RO=427;RPL=0;RPP=55.1256;RPPR=930.229;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=427;SRP=930.229;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:146:146,0:146:5854:0:0:0,-43.9504,-526.636 0/1:129:112,17:112:4515:17:689:-23.5057,0,-367.432 0/0:89:89,0:89:3577:0:0:0,-26.7917,-321.944 0/0:87:80,7:80:3188:7:286:0,-0.074791,-260.867 dDocent_Contig_1427 7 . T A 1692.19 . AB=0.0391198;ABP=757.605;AC=0;AF=0;AN=8;AO=24;CIGAR=3X2M1X;DP=551;DPB=551;DPRA=0;EPP=55.1256;EPPR=808.627;GTI=0;LEN=1;MEANALT=5;MQM=44.625;MQMR=60;NS=4;NUMALT=4;ODDS=5.55112e-17;PAIRED=0.75;PAIREDR=0.994609;PAO=0;PQA=0;PQR=0;PRO=0;QA=914;QR=14254;RO=371;RPL=0;RPP=55.1256;RPPR=808.627;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=371;SRP=808.627;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:111:74,8,0,17,12:74:2845:8,0,17,12:301,0,653,476:-31.2901,-33.2037,-264.354,-53.5663,-266.763,-287.136,0,-213.206,-233.578,-228.46,-14.3727,-227.579,-247.952,-194.393,-244.339 0|0:157:104,3,5,34,11:104:3963:3,5,34,11:118,190,1305,450:-75.6916,-97.3136,-421.484,-91.4173,-406.805,-414.985,0,-315.379,-309.482,-314.829,-69.8576,-385.249,-379.352,-287.925,-391.623 0|0:142:110,8,1,10,9:110:4242:8,1,10,9:302,39,381,354:0,-14.6202,-360.565,-29.9063,-359.768,-377.976,-1.87763,-331.75,-347.053,-347.249,-3.97929,-333.854,-349.157,-321.139,-349.654 0|0:141:83,5,8,15,28:83:3204:5,8,15,28:193,302,581,1108:-66.2039,-77.4372,-339.064,-66.4389,-315.818,-327.164,-43.507,-292.888,-281.892,-302.127,0,-249.39,-238.393,-215.463,-254.715 dDocent_Contig_1429 7 . T C 84.6052 . AB=0.294118;ABP=9.26925;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X1M2X1M2X;DP=142;DPB=142;DPRA=1.25397;EPP=16.0391;EPPR=291.816;GTI=0;LEN=1;MEANALT=1.5;MQM=33;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=239;QR=5138;RO=133;RPL=0;RPP=16.0391;RPPR=291.816;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=133;SRP=291.816;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:62:60,1:60:2325:1:40:0,-15.4927,-206.207 0|0:42:40,0:40:1540:0:0:0,-12.0412,-138.474 0|1:17:12,5:12:452:5:199:-9.68237,0,-35.9087 0|0:21:21,0:21:821:0:0:0,-6.32163,-74.2132 dDocent_Contig_1430 8 . C A 5193.49 . 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AB=0.356757;ABP=35.9815;AC=4;AF=0.5;AN=8;AO=66;CIGAR=1X;DP=185;DPB=185;DPRA=0;EPP=146.327;EPPR=261.416;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2615;QR=4598;RO=119;RPL=66;RPP=146.327;RPPR=261.416;RPR=0;RUN=1;SAF=66;SAP=146.327;SAR=0;SRF=119;SRP=261.416;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:50:38,12:38:1449:12:481:-28.5896,0,-115.6 0/1:48:41,7:41:1559:7:279:-11.0293,0,-126.089 0/1:64:30,34:30:1201:34:1336:-101.227,0,-89.1011 0/1:23:10,13:10:389:13:519:-40.1319,0,-28.4358 dDocent_Contig_1432 22 . A T 2054.93 . AB=0.268987;ABP=149.488;AC=4;AF=0.5;AN=8;AO=85;CIGAR=1X3M1X;DP=316;DPB=319.2;DPRA=0;EPP=187.585;EPPR=456.848;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=2.77556e-17;PAIRED=1;PAIREDR=0.995215;PAO=0;PQA=0;PQR=0;PRO=0;QA=3331;QR=8185;RO=209;RPL=0;RPP=187.585;RPPR=456.848;RPR=85;RUN=1;SAF=85;SAP=187.585;SAR=0;SRF=209;SRP=456.848;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:122:76,12,34,0:76:2951:12,34,0:471,1329,0:-86.3791,-70.521,-309.36,0,-203.713,-232.214,-109.257,-312.972,-242.449,-351.708 0|1:108:74,4,27,2:74:2917:4,27,2:159,1058,80:-64.7183,-73.9029,-312.675,0,-226.88,-231.844,-80.4042,-307.289,-233.381,-319.779 0|1:58:38,0,19,1:38:1491:0,19,1:0,744,40:-49.7277,-61.1668,-183.786,0,-122.611,-116.892,-57.8713,-180.491,-119.316,-180.19 0|1:28:21,0,5,2:21:826:0,5,2:0,200,79:-10.1571,-16.4788,-84.4184,0,-67.942,-66.4369,-9.97958,-77.9178,-61.4413,-77.3157 dDocent_Contig_1433 67 . T C 154.836 . AB=0.375;ABP=5.18177;AC=1;AF=0.125;AN=8;AO=11;CIGAR=1X;DP=198;DPB=198;DPRA=1.35714;EPP=26.8965;EPPR=409.076;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=428;QR=6984;RO=187;RPL=11;RPP=26.8965;RPPR=409.076;RPR=0;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=187;SRP=409.076;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:98:93,5:93:3522:5:193:0,-11.7596,-299.378 0/0:37:37,0:37:1376:0:0:0,-11.1381,-124.116 0/0:47:47,0:47:1709:0:0:0,-14.1484,-154.062 0/1:16:10,6:10:377:6:235:-16.7055,0,-29.4651 dDocent_Contig_1434 17 . C T 151.966 . AB=0.0804598;ABP=136.019;AC=3;AF=0.375;AN=8;AO=7;CIGAR=4M1X3M1X6M1X2M1X;DP=95;DPB=94.1579;DPRA=3.625;EPP=18.2106;EPPR=148.499;GTI=0;LEN=1;MEANALT=3.33333;MQM=60;MQMR=60;NS=4;NUMALT=5;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=272;QR=2642;RO=67;RPL=0;RPP=18.2106;RPPR=148.499;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=67;SRP=148.499;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:36:20,5,6,0,4,0:20:790:5,6,0,4,0:201,238,0,154,0:-13.5829,-3.0273,-66.5512,0,-48.4624,-63.224,-19.6035,-68.0563,-65.0301,-84.623,-6.95766,-55.4135,-52.3874,-71.9805,-70.7764,-19.6035,-68.0563,-65.0301,-84.623,-71.9805,-84.623 0|1:39:29,3,1,3,1,2:29:1140:3,1,3,1,2:119,40,120,38,76:-1.15836,-0.0909917,-92.956,-6.59466,-90.5661,-100.061,0,-83.9732,-90.4762,-92.8662,-6.77315,-90.7429,-97.2459,-90.6531,-100.238,-3.65856,-87.6269,-94.1299,-87.5371,-94.3067,-96.8208 0|0:8:8,0,0,0,0,0:8:313:0,0,0,0,0:0,0,0,0,0:0,-2.40824,-28.5347,-2.40824,-28.5347,-28.5347,-2.40824,-28.5347,-28.5347,-28.5347,-2.40824,-28.5347,-28.5347,-28.5347,-28.5347,-2.40824,-28.5347,-28.5347,-28.5347,-28.5347,-28.5347 0|1:12:10,0,0,0,2,0:10:399:0,0,0,2,0:0,0,0,80,0:-3.97943,-6.98973,-39.8505,-6.98973,-39.8505,-39.8505,-6.98973,-39.8505,-39.8505,-39.8505,0,-33.2602,-33.2602,-33.2602,-32.6581,-6.98973,-39.8505,-39.8505,-39.8505,-33.2602,-39.8505 dDocent_Contig_1435 12 . C T 42.4899 . AB=0.126582;ABP=98.6925;AC=1;AF=0.125;AN=8;AO=31;CIGAR=1X;DP=524;DPB=524;DPRA=1.14689;EPP=70.3259;EPPR=1060.54;GTI=0;LEN=1;MEANALT=1.33333;MQM=39.1935;MQMR=50.5764;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.203666;PAO=0;PQA=0;PQR=0;PRO=0;QA=1105;QR=19610;RO=491;RPL=0;RPP=70.3259;RPPR=1069.2;RPR=31;RUN=1;SAF=31;SAP=70.3259;SAR=0;SRF=490;SRP=1060.54;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:157:152,5:152:6063:5:180:0,-31.1971,-494.715 0/0:170:152,16:152:6101:16:588:0,-1.11981,-477.337 0/0:118:118,0:118:4702:0:0:0,-35.5215,-412.316 0/1:79:69,10:69:2744:10:337:-5.47057,0,-210.348 dDocent_Contig_1436 53 . G A 125.671 . AB=0.114286;ABP=183.925;AC=2;AF=0.25;AN=8;AO=16;CIGAR=1X;DP=185;DPB=185;DPRA=3.11111;EPP=37.7539;EPPR=369.989;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=627;QR=6731;RO=169;RPL=16;RPP=37.7539;RPPR=369.989;RPR=0;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=169;SRP=369.989;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:82:74,8:74:2953:8:313:-3.84724,0,-241.179 0/1:58:50,8:50:1990:8:314:-11.1631,0,-161.834 0/0:30:30,0:30:1183:0:0:0,-9.0309,-106.746 0/0:15:15,0:15:605:0:0:0,-4.51545,-54.7891 dDocent_Contig_1437 8 . T C 4475.8 . AB=0.672646;ABP=60.7442;AC=4;AF=0.5;AN=8;AO=150;CIGAR=1X;DP=223;DPB=223;DPRA=0;EPP=328.731;EPPR=161.528;GTI=0;LEN=1;MEANALT=1;MQM=58.7933;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.813333;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5776;QR=2792;RO=73;RPL=0;RPP=328.731;RPPR=161.528;RPR=150;RUN=1;SAF=150;SAP=328.731;SAR=0;SRF=73;SRP=161.528;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:79:25,54:25:939:54:2088:-164.278,0,-61.0422 0/1:56:24,32:24:927:32:1241:-94.6287,0,-66.8894 0/1:42:11,31:11:424:31:1191:-94.8244,0,-25.8704 0/1:46:13,33:13:502:33:1256:-99.3379,0,-31.6807 dDocent_Contig_1438 36 . T C 57.2627 . AB=0.111111;ABP=97.59;AC=2;AF=0.25;AN=8;AO=8;CIGAR=1X;DP=147;DPB=147;DPRA=0.96;EPP=20.3821;EPPR=304.845;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.25;PAIREDR=0.460432;PAO=0;PQA=0;PQR=0;PRO=0;QA=323;QR=5588;RO=139;RPL=0;RPP=20.3821;RPPR=304.845;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=139;SRP=304.845;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:46:41,5:41:1667:5:201:-4.62314,0,-136.398 0/0:48:48,0:48:1923:0:0:0,-14.4494,-173.265 0/0:27:27,0:27:1073:0:0:0,-8.12781,-96.8548 0/1:26:23,3:23:925:3:122:-3.54571,0,-75.727 dDocent_Contig_1439 196 . T A 82.341 . AB=0.192308;ABP=24.391;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=86;DPB=86;DPRA=1.3;EPP=13.8677;EPPR=178.9;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=188;QR=2993;RO=81;RPL=5;RPP=13.8677;RPPR=178.9;RPR=0;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=178.9;SRR=81;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:16:16,0:16:599:0:0:0,-4.81648,-54.2461 0/1:26:21,5:21:794:5:188:-9.45594,0,-63.9565 0/0:31:31,0:31:1132:0:0:0,-9.33193,-102.176 0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4477 dDocent_Contig_1440 28 . T C 34.463 . AB=0.15;ABP=24.2907;AC=2;AF=0.25;AN=8;AO=3;CIGAR=1X;DP=66;DPB=66;DPRA=0.434783;EPP=9.52472;EPPR=139.813;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=123;QR=2499;RO=63;RPL=0;RPP=9.52472;RPPR=139.813;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=63;SRP=139.813;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:14:14,0:14:560:0:0:0,-4.21442,-50.7414 0/0:32:32,0:32:1284:0:0:0,-9.63296,-115.826 0/1:7:6,1:6:241:1:41:-1.98736,0,-19.9595 0/1:13:11,2:11:414:2:82:-3.86629,0,-33.6786 dDocent_Contig_1442 14 . G C 62.6495 . AB=0.210526;ABP=16.8392;AC=2;AF=0.25;AN=8;AO=4;CIGAR=1X;DP=35;DPB=35;DPRA=1.1875;EPP=11.6962;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=152;QR=1245;RO=31;RPL=0;RPP=11.6962;RPPR=70.3259;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:11,0:11:441:0:0:0,-3.31133,-40.0444 0/0:5:5,0:5:205:0:0:0,-1.50515,-18.835 0/1:11:9,2:9:363:2:70:-3.33542,0,-29.723 0/1:8:6,2:6:236:2:82:-5.37144,0,-19.2032 dDocent_Contig_1443 7 . T A 219.884 . AB=0.159091;ABP=91.8433;AC=2;AF=0.25;AN=8;AO=16;CIGAR=3M1X;DP=212;DPB=207;DPRA=0.928571;EPP=37.7539;EPPR=406.904;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.822581;PAO=0;PQA=0;PQR=0;PRO=0;QA=613;QR=7032;RO=186;RPL=0;RPP=37.7539;RPPR=406.904;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=186;SRP=406.904;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:68:62,4,2:62:2350:4,2:148,77:0,-6.67887,-198.156,-12.3355,-193.037,-204.431 0|0:56:56,0,0:56:2109:0,0:0,0:0,-16.8577,-190.055,-16.8577,-190.055,-190.055 0|1:66:49,5,12:49:1858:5,12:178,462:-23.2034,-23.4553,-174.296,0,-137.867,-148.759 0|1:22:19,1,2:19:715:1,2:39,74:-0.32078,-2.82784,-61.1188,0,-55.3668,-57.9713 dDocent_Contig_1444 25 . T A 8487.78 . AB=0.454685;ABP=14.6215;AC=4;AF=0.5;AN=8;AO=296;CIGAR=1X;DP=651;DPB=651;DPRA=0;EPP=645.766;EPPR=771.712;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=2.77556e-17;PAIRED=0.996622;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=11666;QR=13982;RO=354;RPL=0;RPP=645.766;RPPR=771.712;RPR=296;RUN=1;SAF=296;SAP=645.766;SAR=0;SRF=354;SRP=771.712;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:238:137,101:137:5424:101:3972:-285.842,0,-416.37 0/1:157:88,68:88:3492:68:2682:-194.126,0,-266.955 0/1:152:77,75:77:3025:75:2950:-219.845,0,-226.583 0/1:104:52,52:52:2041:52:2062:-154.454,0,-152.567 dDocent_Contig_1445 1 . N G 135.99 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=140;QR=0;RO=0;RPL=0;RPP=11.6962;RPPR=0;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:71:-6.74206,-0.60206,0 1/1:2:0,2:0:0:2:69:-6.55266,-0.60206,0 dDocent_Contig_1446 18 . A G 696.45 . AB=0.264151;ABP=105.438;AC=4;AF=0.5;AN=8;AO=56;CIGAR=3X1M2X;DP=212;DPB=212;DPRA=0;EPP=124.613;EPPR=339.589;GTI=0;LEN=1;MEANALT=1.25;MQM=27.625;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2197;QR=6050;RO=155;RPL=0;RPP=124.613;RPPR=339.589;RPR=56;RUN=1;SAF=56;SAP=124.613;SAR=0;SRF=155;SRP=339.589;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:42:30,12:30:1174:12:466:-15.6785,0,-93.3089 0|1:86:55,31:55:2149:31:1221:-51.615,0,-167.72 0|1:47:38,8:38:1482:8:314:-6.16594,0,-119.611 0|1:37:32,5:32:1245:5:196:-1.59086,0,-101.196 dDocent_Contig_1447 10 . G A 5250.94 . AB=0.473262;ABP=5.33273;AC=4;AF=0.5;AN=8;AO=177;CIGAR=1X;DP=374;DPB=374;DPRA=0;EPP=387.361;EPPR=430.79;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7137;QR=7931;RO=197;RPL=0;RPP=387.361;RPPR=430.79;RPR=177;RUN=1;SAF=177;SAP=387.361;SAR=0;SRF=197;SRP=430.79;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:121:69,52:69:2773:52:2092:-152.033,0,-213.252 0/1:113:56,57:56:2248:57:2313:-174.303,0,-168.463 0/1:72:41,31:41:1664:31:1252:-91.2743,0,-128.306 0/1:68:31,37:31:1246:37:1480:-112.974,0,-91.9383 dDocent_Contig_1448 32 . A G 71.3167 . AB=0.147059;ABP=39.7976;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=91;DPB=91;DPRA=1.78947;EPP=13.8677;EPPR=189.757;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=199;QR=3395;RO=86;RPL=0;RPP=13.8677;RPPR=189.757;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=86;SRP=189.757;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:34:29,5:29:1147:5:199:-8.05242,0,-93.2725 0/0:43:43,0:43:1680:0:0:0,-12.9443,-151.421 0/0:6:6,0:6:242:0:0:0,-1.80618,-22.1569 0/0:8:8,0:8:326:0:0:0,-2.40824,-29.7099 dDocent_Contig_1449 40 . C A 163.729 . AB=0.269231;ABP=15.0369;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=73;DPB=73;DPRA=1.14706;EPP=20.3821;EPPR=144.156;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.815385;PAO=0;PQA=0;PQR=0;PRO=0;QA=313;QR=2552;RO=65;RPL=0;RPP=20.3821;RPPR=144.156;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=65;SRP=144.156;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:19,7:19:750:7:275:-17.2912,0,-60.0003 0/0:17:17,0:17:656:0:0:0,-5.11751,-59.3707 0/0:17:17,0:17:679:0:0:0,-5.11751,-61.442 0/0:13:12,1:12:467:1:38:0,-0.116121,-38.5816 dDocent_Contig_1450 8 . T C 7641.95 . AB=0.805085;ABP=193.805;AC=6;AF=0.75;AN=8;AO=281;CIGAR=2M1X5M;DP=334;DPB=331.25;DPRA=0;EPP=613.194;EPPR=46.4397;GTI=0;LEN=1;MEANALT=3.5;MQM=41.1246;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=0.846975;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=9701;QR=779;RO=20;RPL=0;RPP=613.194;RPPR=46.4397;RPR=281;RUN=1;SAF=281;SAP=613.194;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:98:6,0,0,91:6:233:0,0,91:0,0,3067:-240.578,-242.385,-261.535,-242.385,-261.535,-261.535,-8.24925,-27.3937,-27.3937,0 1|1:98:7,5,9,77:7:271:5,9,77:182,342,2693:-212.539,-199.781,-220.54,-187.581,-194.98,-207.137,-4.79013,-12.1969,0,-3.87909 0|1:87:7,3,4,69:7:275:3,4,69:117,156,2379:-178.634,-171.121,-192.843,-168.426,-181.432,-189.847,0,-13.0153,-10.3227,-1.8673 0|1:51:0,5,2,44:0:0:5,2,44:192,78,1562:-136.354,-120.588,-119.083,-130.196,-114.43,-129.594,-15.7671,0,-9.61342,-2.52173 dDocent_Contig_1451 20 . T G 156.463 . AB=0.118056;ABP=185.474;AC=1;AF=0.125;AN=8;AO=17;CIGAR=1X;DP=356;DPB=356;DPRA=2.03774;EPP=39.9253;EPPR=739.139;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=662;QR=13198;RO=339;RPL=0;RPP=39.9253;RPPR=739.139;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=339;SRP=739.139;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:144:127,17:127:4964:17:662:-16.5671,0,-403.365 0/0:67:67,0:67:2604:0:0:0,-20.169,-234.522 0/0:95:95,0:95:3685:0:0:0,-28.5978,-331.726 0/0:50:50,0:50:1945:0:0:0,-15.0515,-175.271 dDocent_Contig_1452 9 . T A 590.443 . AB=0.392857;ABP=8.59409;AC=1;AF=0.125;AN=8;AO=24;CIGAR=1X;DP=144;DPB=144;DPRA=2.06383;EPP=55.1256;EPPR=263.587;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=928;QR=4614;RO=120;RPL=0;RPP=55.1256;RPPR=263.587;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=120;SRP=263.587;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:56:34,22:34:1315:22:850:-59.9652,0,-101.78 0/0:31:31,0:31:1177:0:0:0,-9.33193,-106.227 0/0:41:39,2:39:1501:2:78:0,-4.93876,-127.96 0/0:16:16,0:16:621:0:0:0,-4.81648,-56.2301 dDocent_Contig_1453 107 . N T 66.5064 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X1M1D1M;DP=2;DPB=1.5;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=4.89285;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=70;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. 1|1:2:0,2:0:0:2:70:-6.6474,-0.60206,0 .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. dDocent_Contig_1455 98 . N T 100.768 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=2X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.586;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=108;QR=0;RO=0;RPL=3;RPP=9.52472;RPPR=0;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. 1|1:3:0,3:0:0:3:108:-10.0752,-0.90309,0 .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. dDocent_Contig_1456 42 . C T 407.014 . AB=0.340426;ABP=13.4056;AC=1;AF=0.125;AN=8;AO=16;CIGAR=1X;DP=270;DPB=270;DPRA=0.632287;EPP=37.7539;EPPR=554.564;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=616;QR=10192;RO=254;RPL=0;RPP=37.7539;RPPR=554.564;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=254;SRP=554.564;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:47:31,16:31:1244:16:616:-41.6223,0,-98.0845 0/0:98:98,0:98:3924:0:0:0,-29.5009,-353.145 0/0:52:52,0:52:2087:0:0:0,-15.6536,-188.009 0/0:73:73,0:73:2937:0:0:0,-21.9752,-264.419 dDocent_Contig_1457 98 . N G 180.549 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=6;CIGAR=4X;DP=6;DPB=73.75;DPRA=0;EPP=16.0391;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=40;MQMR=0;NS=1;NUMALT=1;ODDS=7.66544;PAIRED=1;PAIREDR=0;PAO=64;PQA=2089;PQR=0;PRO=0;QA=207;QR=0;RO=0;RPL=6;RPP=16.0391;RPPR=0;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:6:0,6:0:0:6:207:-18.0547,-1.80618,0 .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. dDocent_Contig_1459 98 . N G 1015.52 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=37;CIGAR=1X;DP=37;DPB=37;DPRA=0;EPP=83.3548;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=43.027;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=0.891892;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1240;QR=0;RO=0;RPL=37;RPP=83.3548;RPPR=0;RPR=0;RUN=1;SAF=37;SAP=83.3548;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:10:0,10:0:0:10:340:-30.2273,-3.0103,0 1/1:12:0,12:0:0:12:408:-26.3212,-3.61236,0 1/1:10:0,10:0:0:10:327:-29.4147,-3.0103,0 1/1:5:0,5:0:0:5:165:-14.8902,-1.50515,0 dDocent_Contig_1460 98 . N A 552.292 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=34;CIGAR=4X;DP=34;DPB=268.75;DPRA=0;EPP=76.8404;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=20.3529;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=0.117647;PAIREDR=0;PAO=577;PQA=19457;PQR=0;PRO=0;QA=1146;QR=0;RO=0;RPL=34;RPP=76.8404;RPPR=0;RPR=0;RUN=1;SAF=34;SAP=76.8404;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:6:0,6:0:0:6:199:-7.40341,-1.80618,0 1|1:13:0,13:0:0:13:437:-19.732,-3.91339,0 1|1:11:0,11:0:0:11:373:-16.6211,-3.31133,0 1|1:4:0,4:0:0:4:137:-10.7735,-1.20412,0 dDocent_Contig_1461 98 . N C 9077.35 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=295;CIGAR=1X;DP=295;DPB=295;DPRA=0;EPP=643.595;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=10069;QR=0;RO=0;RPL=295;RPP=643.595;RPPR=0;RPR=0;RUN=1;SAF=295;SAP=643.595;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:281:0,281:0:0:281:9652:-868.702,-84.5894,0 1/1:3:0,3:0:0:3:83:-7.74512,-0.90309,0 1/1:8:0,8:0:0:8:230:-20.982,-2.40824,0 1/1:3:0,3:0:0:3:104:-9.70309,-0.90309,0 dDocent_Contig_1462 14 . G A 96.7148 . AB=0.171429;ABP=35.8306;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=141;DPB=141;DPRA=1.43103;EPP=18.2106;EPPR=293.988;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.977612;PAO=0;PQA=0;PQR=0;PRO=0;QA=274;QR=5261;RO=134;RPL=0;RPP=18.2106;RPPR=293.988;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=134;SRP=293.988;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:44:44,0:44:1712:0:0:0,-13.2453,-154.297 0/1:35:29,6:29:1159:6:234:-10.8933,0,-94.0563 0/0:48:47,1:47:1826:1:40:0,-10.4538,-160.546 0/0:14:14,0:14:564:0:0:0,-4.21442,-51.1017 dDocent_Contig_1463 7 . A T 4409.91 . AB=0.7;ABP=58.6;AC=5;AF=0.625;AN=8;AO=145;CIGAR=1X1M1X;DP=194;DPB=194;DPRA=0;EPP=317.874;EPPR=107.241;GTI=0;LEN=1;MEANALT=1.25;MQM=53.2483;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.993103;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5531;QR=1831;RO=48;RPL=0;RPP=317.874;RPPR=107.241;RPR=145;RUN=1;SAF=145;SAP=317.874;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:55:21,34:21:796:34:1307:-100.994,0,-55.4085 0|1:49:17,32:17:647:32:1221:-94.9778,0,-43.8146 0|1:56:9,46:9:349:46:1747:-140.01,0,-14.8248 1|1:34:1,33:1:39:33:1256:-108.976,-6.33846,0 dDocent_Contig_1464 45 . G A 5587.8 . AB=0.688889;ABP=86.6844;AC=4;AF=0.5;AN=8;AO=186;CIGAR=1X3M1X;DP=270;DPB=270;DPRA=0;EPP=406.904;EPPR=181.071;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7164;QR=3163;RO=82;RPL=0;RPP=406.904;RPPR=181.071;RPR=186;RUN=1;SAF=186;SAP=406.904;SAR=0;SRF=82;SRP=181.071;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:93:30,62:30:1127:62:2404:-188.467,0,-73.6309 0|1:85:26,59:26:1022:59:2254:-177.482,0,-66.6929 0|1:46:16,29:16:619:29:1109:-86.1648,0,-42.1016 0|1:46:10,36:10:395:36:1397:-112.155,0,-22.0606 dDocent_Contig_1465 12 . C A 28110 . AB=0.804598;ABP=213.344;AC=7;AF=0.875;AN=8;AO=824;CIGAR=1X;DP=909;DPB=909;DPRA=0;EPP=1792.3;EPPR=148.499;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.998786;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=33031;QR=2677;RO=67;RPL=0;RPP=1792.3;RPPR=148.499;RPR=824;RUN=1;SAF=824;SAP=1792.3;SAR=0;SRF=67;SRP=148.499;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:205:3,201:3:123:201:8080:-715.259,-50.3548,0 1/1:264:11,246:11:444:246:9883:-848.5,-37.4549,0 0/1:261:44,210:44:1777:210:8380:-676.858,0,-83.2736 1/1:179:9,167:9:333:167:6688:-571.299,-23.0679,0 dDocent_Contig_1466 119 . G C 591.843 . AB=0.462963;ABP=3.6537;AC=1;AF=0.125;AN=8;AO=25;CIGAR=1X;DP=125;DPB=125;DPRA=2.28169;EPP=57.2971;EPPR=220.158;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=845;QR=3299;RO=100;RPL=0;RPP=57.2971;RPPR=220.158;RPR=25;RUN=1;SAF=0;SAP=57.2971;SAR=25;SRF=0;SRP=220.158;SRR=100;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:54:29,25:29:976:25:845:-60.1051,0,-71.8884 0/0:15:15,0:15:486:0:0:0,-4.51545,-44.0503 0/0:39:39,0:39:1307:0:0:0,-11.7402,-117.925 0/0:17:17,0:17:530:0:0:0,-5.11751,-47.9971 dDocent_Contig_1467 10 . C A 36820.2 . AB=0.682377;ABP=566.952;AC=4;AF=0.5;AN=8;AO=1332;CIGAR=2X3M1X;DP=1952;DPB=2011.33;DPRA=0;EPP=2895.41;EPPR=565.422;GTI=0;LEN=1;MEANALT=15.75;MQM=43.5841;MQMR=59.7336;NS=4;NUMALT=2;ODDS=0;PAIRED=0.954204;PAIREDR=0.416988;PAO=356;PQA=13852;PQR=0;PRO=0;QA=50757;QR=9992;RO=259;RPL=0;RPP=2895.41;RPPR=565.422;RPR=1332;RUN=1;SAF=1332;SAP=2895.41;SAR=0;SRF=259;SRP=565.422;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:671:96,470,31:96:3702:470,31:17880,1192:-1294.97,0,-161.311,-1226.01,-204.931,-1519.46 0|1:462:60,307,41:60:2318:307,41:11755,1577:-839.3,0,-97.976,-727.928,-60.9526,-905.968 0|1:553:61,394,29:61:2342:394,29:15009,1091:-1097.7,0,-73.6442,-1026.91,-103.085,-1210.42 0|1:266:42,161,24:42:1630:161,24:6113,923:-455.531,0,-85.4817,-392.393,-58.1605,-519.102 dDocent_Contig_1468 172 . A G 1708.28 . AB=0.617284;ABP=12.6881;AC=5;AF=0.625;AN=8;AO=55;CIGAR=1X;DP=86;DPB=86;DPRA=0;EPP=122.441;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2199;QR=1196;RO=30;RPL=55;RPP=122.441;RPPR=68.1545;RPR=0;RUN=1;SAF=0;SAP=122.441;SAR=55;SRF=0;SRP=68.1545;SRR=30;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:5:0,5:0:0:5:205:-18.835,-1.50515,0 0/1:34:13,21:13:515:21:853:-66.8454,0,-36.4569 0/1:35:10,24:10:399:24:938:-74.0738,0,-25.6239 0/1:12:7,5:7:282:5:203:-15.0405,0,-22.1402 dDocent_Contig_1469 32 . T A 213.99 . AB=0.238095;ABP=28.0339;AC=2;AF=0.25;AN=8;AO=11;CIGAR=1X;DP=116;DPB=116;DPRA=0.803922;EPP=26.8965;EPPR=231.015;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.952381;PAO=0;PQA=0;PQR=0;PRO=0;QA=435;QR=3981;RO=105;RPL=0;RPP=26.8965;RPPR=231.015;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=105;SRP=231.015;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:15,4:15:542:4:160:-9.06335,0,-43.3887 0/1:23:17,6:17:645:6:237:-14.7793,0,-51.4563 0/0:34:34,0:34:1299:0:0:0,-10.235,-117.191 0/0:40:39,1:39:1495:1:38:0,-8.24393,-131.02 dDocent_Contig_1470 197 . G A 411.367 . AB=0.0652174;ABP=154.069;AC=0;AF=0;AN=8;AO=6;CIGAR=1M1X2M1X;DP=328;DPB=323.8;DPRA=1.09524;EPP=8.80089;EPPR=565.422;GTI=0;LEN=1;MEANALT=3;MQM=21.1667;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=232;QR=9807;RO=259;RPL=5;RPP=8.80089;RPPR=565.422;RPR=1;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=565.422;SRR=259;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:117:98,7,0,9:98:3702:7,0,9:258,0,312:0,-8.3757,-309.754,-29.5009,-311.861,-332.955,-8.17742,-290.528,-311.621,-308.912 0|0:92:72,0,6,13:72:2737:0,6,13:0,232,491:-13.3066,-34.9807,-259.511,-25.4321,-249.94,-248.134,0,-224.619,-215.05,-220.705 0|0:68:45,14,0,9:45:1714:14,0,9:533,0,353:-30.2737,0,-136.516,-43.8201,-140.731,-184.447,-30.4705,-127.341,-171.05,-168.341 0|0:51:44,0,0,5:44:1654:0,0,5:0,0,179:0,-13.2453,-148.798,-13.2453,-148.798,-148.798,-1.61715,-137.134,-137.134,-135.629 dDocent_Contig_1471 29 . C T 94.3226 . AB=0.114035;ABP=150.518;AC=2;AF=0.25;AN=8;AO=17;CIGAR=1X;DP=358;DPB=358;DPRA=0.56391;EPP=39.9253;EPPR=743.482;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=0.98827;PAO=0;PQA=0;PQR=0;PRO=0;QA=659;QR=13521;RO=341;RPL=0;RPP=39.9253;RPPR=743.482;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=341;SRP=743.482;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:133:133,0:133:5257:0:0:0,-40.037,-472.983 0/0:111:107,4:107:4213:4:162:0,-18.4474,-364.166 0/1:57:49,8:49:1957:8:305:-10.6442,0,-159.17 0/1:57:52,5:52:2094:5:192:-0.489033,0,-171.48 dDocent_Contig_1472 74 . T A 237.588 . AB=0.195402;ABP=73.1214;AC=3;AF=0.375;AN=8;AO=19;CIGAR=1X;DP=169;DPB=169;DPRA=0;EPP=44.2683;EPPR=328.731;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=0.986667;PAO=0;PQA=0;PQR=0;PRO=0;QA=645;QR=5181;RO=150;RPL=19;RPP=44.2683;RPPR=328.731;RPR=0;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=150;SRP=328.731;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:82:80,2:80:2775:2:70:0,-18.0371,-243.355 0/1:31:28,3:28:951:3:104:-0.371162,0,-76.5665 0/1:38:29,9:29:1007:9:298:-15.7032,0,-79.5042 0/1:18:13,5:13:448:5:173:-10.4917,0,-35.2315 dDocent_Contig_1473 8 . T C 5919.81 . AB=0.716667;ABP=100.871;AC=5;AF=0.625;AN=8;AO=193;CIGAR=1X;DP=262;DPB=262;DPRA=0;EPP=422.104;EPPR=152.842;GTI=0;LEN=1;MEANALT=1;MQM=59.943;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.989637;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7457;QR=2665;RO=69;RPL=0;RPP=422.104;RPPR=152.842;RPR=193;RUN=1;SAF=193;SAP=422.104;SAR=0;SRF=69;SRP=152.842;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:71:24,47:24:927:47:1818:-142.474,0,-62.372 0/1:65:28,37:28:1079:37:1425:-108.961,0,-77.8475 0/1:104:16,88:16:620:88:3401:-274.913,0,-24.8329 1/1:22:1,21:1:39:21:813:-69.599,-2.7261,0 dDocent_Contig_1474 32 . T G 4810.58 . AB=0.0901961;ABP=374.979;AC=1;AF=0.125;AN=8;AO=23;CIGAR=8M8D2M1X;DP=255;DPB=219.947;DPRA=0;EPP=52.9542;EPPR=85.5263;GTI=0;LEN=1;MEANALT=5;MQM=60;MQMR=60;NS=4;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=922;QR=1465;RO=38;RPL=0;RPP=52.9542;RPPR=85.5263;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:92:14,3,50,23,0:14:535:3,50,23,0:119,1943,865,0:-182.402,-176.82,-219.812,-26.9663,-61.0684,-55.8144,-115.757,-149.856,0,-152.728,-186.617,-220.715,-70.8659,-159.652,-230.512 0|0:98:10,12,45,28,0:10:390:12,45,28,0:478,1745,1046,0:-193.904,-157.55,-185.997,-53.567,-46.2603,-72.0819,-111.288,-103.983,0,-134.918,-196.914,-189.61,-85.6283,-143.347,-228.973 0|0:44:9,3,30,1,0:9:346:3,30,1,0:123,1145,33,0:-91.2236,-83.7777,-111.279,0,-18.257,-19.3876,-91.2661,-109.515,-25.7538,-119.369,-93.9329,-112.182,-28.4185,-119.67,-122.337 1|0:21:5,5,6,2,2:5:194:5,6,2,2:202,240,77,81:-18.9976,-3.8392,-18.279,-0.721561,0,-14.861,-14.1807,-13.4614,-10.3443,-29.5201,-13.8202,-13.1009,-9.98355,-23.4404,-29.1604 dDocent_Contig_1475 1 . N G 621.744 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=17;CIGAR=1X;DP=17;DPB=17;DPRA=0;EPP=39.9253;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=673;QR=0;RO=0;RPL=0;RPP=39.9253;RPPR=0;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:8:0,8:0:0:8:314:-28.6251,-2.40824,0 1/1:4:0,4:0:0:4:160:-14.7834,-1.20412,0 1/1:5:0,5:0:0:5:199:-18.2884,-1.50515,0 ./.:.:.:.:.:.:.:. dDocent_Contig_1476 32 . C A 9645.23 . AB=0.0222965;ABP=1780.98;AC=0;AF=0;AN=8;AO=20;CIGAR=1X1M1X3M1X;DP=897;DPB=897;DPRA=0;EPP=46.4397;EPPR=676.167;GTI=0;LEN=1;MEANALT=5.25;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=0.996774;PAO=0;PQA=0;PQR=0;PRO=0;QA=780;QR=12120;RO=310;RPL=0;RPP=46.4397;RPPR=676.167;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=310;SRP=676.167;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:341:114,4,141,63:114:4477:4,141,63:155,5462,2526:-414.35,-435.935,-802.94,0,-355.473,-325.761,-240.56,-596.038,-160.099,-589.806 0|0:233:87,4,60,77:87:3413:4,60,77:156,2343,3089:-228.322,-241.689,-521.162,-61.9095,-329.762,-324.523,0,-267.857,-88.0749,-257.501 0|0:207:71,3,78,52:71:2759:3,78,52:118,2993,2086:-224.265,-235.931,-461.723,0,-216.982,-203.209,-73.7641,-290.755,-54.8168,-284.808 0|0:116:38,9,28,35:38:1471:9,28,35:351,1096,1391:-103.075,-85.6639,-203.774,-24.3989,-116.367,-136.789,0,-91.9691,-30.7021,-110.284 dDocent_Contig_1481 98 . N C 160.024 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=5;CIGAR=1X;DP=5;DPB=5;DPRA=0;EPP=13.8677;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=6.97229;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=174;QR=0;RO=0;RPL=5;RPP=13.8677;RPPR=0;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:5:0,5:0:0:5:174:-16.002,-1.50515,0 ./.:.:.:.:.:.:.:. dDocent_Contig_1482 18 . C T 55.2474 . AB=0.0123457;ABP=170.321;AC=0;AF=0;AN=8;AO=8;CIGAR=1X3M1X;DP=328;DPB=328;DPRA=0.952381;EPP=20.3821;EPPR=22.914;GTI=0;LEN=1;MEANALT=4;MQM=8.25;MQMR=44.4232;NS=4;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0.59751;PAO=0;PQA=0;PQR=0;PRO=0;QA=302;QR=9361;RO=241;RPL=0;RPP=20.3821;RPPR=526.335;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=144;SRP=22.914;SRR=97;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:79:56,7,9:56:2172:7,9:263,143:0,-14.5692,-153.835,-9.06949,-148.194,-147.764 0|0:81:47,1,29:47:1801:1,29:39,411:-6.74659,-19.6667,-118.853,0,-98.3181,-90.8132 0|0:122:101,0,18:101:3924:0,18:0,354:0,-30.404,-298.718,-7.46662,-275.852,-270.433 0|0:46:37,0,9:37:1464:0,9:0,119:0,-11.1381,-115.976,-5.29847,-110.289,-107.579 dDocent_Contig_1483 11 . A G 125.708 . AB=0.219512;ABP=59.0449;AC=2;AF=0.25;AN=8;AO=25;CIGAR=1X;DP=198;DPB=198;DPRA=0.666667;EPP=3.09716;EPPR=328.367;GTI=0;LEN=1;MEANALT=1;MQM=24.48;MQMR=59.6185;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=0;PAIREDR=0.774566;PAO=0;PQA=0;PQR=0;PRO=0;QA=994;QR=6881;RO=173;RPL=0;RPP=57.2971;RPPR=378.675;RPR=25;RUN=1;SAF=13;SAP=3.09716;SAR=12;SRF=167;SRP=328.367;SRR=6;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:66:66,0:66:2615:0:0:0,-19.868,-233.115 0/0:50:43,7:43:1711:7:266:0,-0.961652,-140.129 0/1:48:40,8:40:1596:8:325:-2.25629,0,-129.426 0/1:34:24,10:24:959:10:403:-12.7383,0,-76.3777 dDocent_Contig_1484 40 . A C 4680.84 . AB=0.39759;ABP=40.8148;AC=4;AF=0.5;AN=8;AO=165;CIGAR=1X;DP=415;DPB=415;DPRA=0;EPP=361.303;EPPR=545.878;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6640;QR=9960;RO=250;RPL=0;RPP=361.303;RPPR=545.878;RPR=165;RUN=1;SAF=165;SAP=361.303;SAR=0;SRF=250;SRP=545.878;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:185:61,124:61:2457:124:4981:-392.464,0,-165.581 0/1:81:73,8:73:2908:8:327:-5.41668,0,-237.417 0/1:100:75,25:75:2995:25:1005:-60.6434,0,-239.538 0/1:49:41,8:41:1600:8:327:-15.0496,0,-129.478 dDocent_Contig_1486 37 . A G 154.606 . AB=0.136842;ABP=111.835;AC=1;AF=0.125;AN=8;AO=18;CIGAR=1X;DP=222;DPB=222;DPRA=0;EPP=42.0968;EPPR=445.991;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=698;QR=7973;RO=204;RPL=0;RPP=42.0968;RPPR=445.991;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=204;SRP=445.991;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:95:82,13:82:3242:13:496:-16.3814,0,-263.257 0/0:53:52,1:52:2057:1:41:0,-11.86,-181.235 0/0:43:40,3:40:1523:3:121:0,-1.6643,-126.036 0/0:31:30,1:30:1151:1:40:0,-5.33625,-99.8756 dDocent_Contig_1487 27 . T C 5326.31 . AB=0.780374;ABP=149.128;AC=4;AF=0.5;AN=8;AO=167;CIGAR=1X;DP=214;DPB=214;DPRA=0;EPP=365.646;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6685;QR=1867;RO=47;RPL=0;RPP=365.646;RPPR=105.07;RPR=167;RUN=1;SAF=167;SAP=365.646;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:85:13,72:13:522:72:2857:-231.643,0,-21.7399 0/1:61:24,37:24:956:37:1500:-116.877,0,-67.9762 0/1:32:4,28:4:151:28:1121:-91.5399,0,-4.32112 0/1:36:6,30:6:238:30:1207:-98.0614,0,-10.9547 dDocent_Contig_1488 28 . T C 38.8259 . AB=0.375;ABP=4.09604;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=102;DPB=102;DPRA=1.26667;EPP=11.6962;EPPR=215.815;GTI=0;LEN=1;MEANALT=1;MQM=33.25;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=164;QR=3926;RO=98;RPL=0;RPP=11.6962;RPPR=215.815;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=98;SRP=215.815;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:49:48,1:48:1929:1:41:0,-10.6837,-169.74 0/0:34:34,0:34:1361:0:0:0,-10.235,-122.747 0/1:8:5,3:5:190:3:123:-5.10438,0,-15.0526 0/0:11:11,0:11:446:0:0:0,-3.31133,-40.4956 dDocent_Contig_1489 20 . G T 97.4564 . AB=0.111111;ABP=168.525;AC=3;AF=0.375;AN=8;AO=15;CIGAR=1X;DP=142;DPB=142;DPRA=0;EPP=35.5824;EPPR=278.787;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=602;QR=5081;RO=127;RPL=0;RPP=35.5824;RPPR=278.787;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=127;SRP=278.787;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:62:55,7:55:2186:7:281:-6.99721,0,-178.255 0/1:35:31,4:31:1243:4:158:-4.06331,0,-101.604 0/1:29:26,3:26:1048:3:122:-2.64262,0,-85.8801 0/0:16:15,1:15:604:1:41:0,-0.721913,-50.603 dDocent_Contig_1490 88 . T A 51.2845 . AB=0.146341;ABP=47.552;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=271;DPB=271;DPRA=0.375635;EPP=20.3821;EPPR=574.108;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=275;QR=9167;RO=263;RPL=8;RPP=20.3821;RPPR=574.108;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=263;SRP=574.108;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:114:114,0:114:4028:0:0:0,-34.3174,-362.715 0/0:83:83,0:83:2868:0:0:0,-24.9855,-258.357 0/1:41:35,6:35:1215:6:204:-6.35029,0,-97.3114 0/0:33:31,2:31:1056:2:71:0,-3.19193,-88.5977 dDocent_Contig_1491 135 . C T 297.433 . AB=0.212121;ABP=50.5195;AC=1;AF=0.125;AN=8;AO=14;CIGAR=1X;DP=195;DPB=195;DPRA=1.53488;EPP=33.4109;EPPR=396.047;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=561;QR=7047;RO=181;RPL=0;RPP=33.4109;RPPR=396.047;RPR=14;RUN=1;SAF=0;SAP=33.4109;SAR=14;SRF=0;SRP=396.047;SRR=181;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:91:91,0:91:3516:0:0:0,-27.3937,-316.499 0/1:66:52,14:52:2027:14:561:-30.9651,0,-162.746 0/0:25:25,0:25:983:0:0:0,-7.52575,-88.7663 0/0:13:13,0:13:521:0:0:0,-3.91339,-47.237 dDocent_Contig_1492 1 . N G 112.818 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.586;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=121;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:121:-11.2802,-0.90309,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_1493 51 . G A 850.254 . AB=0.263158;ABP=67.8116;AC=1;AF=0.125;AN=8;AO=43;CIGAR=1X;DP=349;DPB=349;DPRA=2.99048;EPP=96.3836;EPPR=667.481;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.906977;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1718;QR=11999;RO=306;RPL=43;RPP=96.3836;RPPR=667.481;RPR=0;RUN=1;SAF=43;SAP=96.3836;SAR=0;SRF=306;SRP=667.481;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:133:98,35:98:3827:35:1397:-85.9462,0,-304.404 0/0:115:111,4:111:4371:4:162:0,-19.6515,-378.398 0/0:66:62,4:62:2454:4:159:0,-5.17602,-206.323 0/0:35:35,0:35:1347:0:0:0,-10.536,-121.487 dDocent_Contig_1494 34 . A T 773.833 . AB=0.354839;ABP=20.0318;AC=2;AF=0.25;AN=8;AO=33;CIGAR=1X;DP=195;DPB=195;DPRA=0.911765;EPP=74.6689;EPPR=354.789;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.8827;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.987654;PAO=0;PQA=0;PQR=0;PRO=0;QA=1191;QR=6079;RO=162;RPL=0;RPP=74.6689;RPPR=354.789;RPR=33;RUN=1;SAF=33;SAP=74.6689;SAR=0;SRF=162;SRP=354.789;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:73:73,0:73:2755:0:0:0,-21.9752,-248.132 0/0:29:29,0:29:1068:0:0:0,-8.72987,-96.3878 0/1:33:27,6:27:1019:6:199:-8.29776,0,-82.0845 0/1:60:33,27:33:1237:27:992:-71.5292,0,-93.5551 dDocent_Contig_1495 170 . A G 553.945 . AB=0.25;ABP=55.1256;AC=2;AF=0.25;AN=8;AO=25;CIGAR=1X;DP=168;DPB=168;DPRA=6.66667;EPP=57.2971;EPPR=313.531;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=997;QR=5317;RO=143;RPL=25;RPP=57.2971;RPPR=313.531;RPR=0;RUN=1;SAF=0;SAP=57.2971;SAR=25;SRF=0;SRP=313.531;SRR=143;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:58:51,7:51:1932:7:278:-7.92882,0,-156.665 0/0:64:63,1:63:2341:1:41:0,-15.1714,-206.819 0/1:38:21,17:21:768:17:678:-49.9094,0,-58.0006 0/0:8:8,0:8:276:0:0:0,-2.40824,-25.1695 dDocent_Contig_1496 20 . A G 511.983 . AB=0.147679;ABP=258.539;AC=3;AF=0.375;AN=8;AO=40;CIGAR=2X;DP=300;DPB=300;DPRA=0;EPP=89.8692;EPPR=567.593;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1581;QR=10418;RO=260;RPL=0;RPP=89.8692;RPPR=567.593;RPR=40;RUN=1;SAF=40;SAP=89.8692;SAR=0;SRF=260;SRP=567.593;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:125:103,22:103:4154:22:860:-40.079,0,-336.186 0|1:73:67,6:67:2688:6:242:-0.182341,0,-220.064 0|0:63:58,5:58:2315:5:202:0,-0.40302,-189.943 0|1:39:32,7:32:1261:7:277:-13.5568,0,-102.01 dDocent_Contig_1497 17 . T G 472.375 . AB=0.226804;ABP=65.8935;AC=3;AF=0.375;AN=8;AO=25;CIGAR=1X;DP=140;DPB=140;DPRA=0;EPP=57.2971;EPPR=250.558;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1003;QR=4509;RO=114;RPL=0;RPP=57.2971;RPPR=250.558;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=114;SRP=250.558;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:51:41,10:41:1629:10:396:-20.6461,0,-131.492 0/0:43:39,3:39:1525:3:122:0,-1.67198,-126.128 0/1:27:19,8:19:756:8:323:-21.3108,0,-60.2357 0/1:19:15,4:15:599:4:162:-9.24718,0,-48.5285 dDocent_Contig_1498 10 . A G 86.8791 . AB=0.142857;ABP=57.2971;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X;DP=159;DPB=159;DPRA=0.939024;EPP=22.5536;EPPR=328.731;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.94;PAO=0;PQA=0;PQR=0;PRO=0;QA=348;QR=5969;RO=150;RPL=0;RPP=22.5536;RPPR=328.731;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=150;SRP=328.731;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:46:46,0:46:1842:0:0:0,-13.8474,-165.987 0/1:49:42,7:42:1664:7:270:-9.90945,0,-135.241 0/0:28:26,2:26:1029:2:78:0,-1.02606,-85.4995 0/0:36:36,0:36:1434:0:0:0,-10.8371,-129.316 dDocent_Contig_1499 12 . T C 19037.5 . AB=0.787575;ABP=361.451;AC=5;AF=0.625;AN=8;AO=588;CIGAR=1X;DP=712;DPB=712;DPRA=0;EPP=1279.84;EPPR=270.101;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=23567;QR=4947;RO=123;RPL=0;RPP=1279.84;RPPR=270.101;RPR=588;RUN=1;SAF=588;SAP=1279.84;SAR=0;SRF=123;SRP=270.101;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:213:17,195:17:687:195:7841:-643.098,-1.78513,0 0/1:231:56,175:56:2252:175:6991:-559.297,0,-133.298 0/1:179:38,141:38:1530:141:5628:-452.425,0,-84.0539 0/1:89:12,77:12:478:77:3107:-252.902,0,-16.5789 dDocent_Contig_1500 30 . C T 64.7505 . AB=0.131579;ABP=47.8112;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=191;DPB=191;DPRA=0.745098;EPP=13.8677;EPPR=406.904;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=205;QR=7547;RO=186;RPL=0;RPP=13.8677;RPPR=406.904;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=186;SRP=406.904;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:38:33,5:33:1343:5:205:-7.39587,0,-109.685 0/0:42:42,0:42:1705:0:0:0,-12.6433,-153.666 0/0:77:77,0:77:3128:0:0:0,-23.1793,-281.576 0/0:34:34,0:34:1371:0:0:0,-10.235,-123.643 dDocent_Contig_1501 15 . A T 3434.16 . AB=0.195062;ABP=657.229;AC=4;AF=0.5;AN=8;AO=158;CIGAR=1M1X2M1X;DP=810;DPB=799.4;DPRA=0;EPP=346.103;EPPR=1108.29;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=4;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6113;QR=20022;RO=509;RPL=0;RPP=346.103;RPPR=1108.29;RPR=158;RUN=1;SAF=158;SAP=346.103;SAR=0;SRF=509;SRP=1108.29;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:334:187,87,29,0,31:187:7355:87,29,0,31:3339,1116,0,1191:-217.772,0,-578.793,-182.448,-513.367,-778.7,-274.065,-604.983,-787.43,-879.046,-176.313,-507.232,-689.679,-781.295,-771.963 0|1:251:168,39,5,4,33:168:6625:39,5,4,33:1517,191,163,1251:-74.0948,0,-533.332,-108.998,-529.403,-652.561,-111.219,-531.625,-640.619,-655.084,-22.1229,-442.526,-551.52,-553.742,-557.255 0|1:87:66,8,0,6,6:66:2575:8,0,6,6:315,0,239,219:-6.05084,0,-209.251,-25.9188,-211.659,-237.574,-6.23364,-191.978,-217.893,-216.087,-8.03895,-193.773,-219.688,-200.007,-217.881 0|1:138:88,24,19,0,7:88:3467:24,19,0,7:942,738,0,266:-50.9871,0,-277.997,-16.8403,-224.584,-296.339,-77.4778,-285.221,-302.059,-362.696,-55.6669,-263.41,-280.247,-340.885,-338.777 dDocent_Contig_1502 16 . C G 117.758 . AB=0.106509;ABP=230.295;AC=2;AF=0.25;AN=8;AO=18;CIGAR=1X;DP=384;DPB=384;DPRA=0.786047;EPP=42.0968;EPPR=797.769;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=45.7814;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.415301;PAO=0;PQA=0;PQR=0;PRO=0;QA=715;QR=14763;RO=366;RPL=0;RPP=42.0968;RPPR=797.769;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=366;SRP=797.769;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:171:171,0:171:6885:0:0:0,-51.4761,-567.399 0/1:102:90,12:90:3656:12:470:-11.9396,0,-271.215 0/1:67:61,6:61:2454:6:245:-2.26046,0,-176.116 0/0:44:44,0:44:1768:0:0:0,-13.2453,-148.315 dDocent_Contig_1503 47 . C A 4664.18 . AB=0.625;ABP=36.6681;AC=4;AF=0.5;AN=8;AO=155;CIGAR=1X;DP=248;DPB=248;DPRA=0;EPP=339.589;EPPR=198.443;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.980645;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6060;QR=3577;RO=90;RPL=0;RPP=339.589;RPPR=198.443;RPR=155;RUN=1;SAF=155;SAP=339.589;SAR=0;SRF=90;SRP=198.443;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:101:42,59:42:1676:59:2347:-180.995,0,-120.666 0/1:68:30,36:30:1197:36:1408:-106.762,0,-87.7923 0/1:49:12,36:12:466:36:1416:-112.88,0,-27.4673 0/1:30:6,24:6:238:24:889:-71.2703,0,-12.763 dDocent_Contig_1504 76 . C T 95.9582 . AB=0.217391;ABP=18.9659;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=143;DPB=143;DPRA=0.932432;EPP=18.2106;EPPR=298.331;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=271;QR=5183;RO=136;RPL=7;RPP=18.2106;RPPR=298.331;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=136;SRP=298.331;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:32:32,0:32:1219:0:0:0,-9.63296,-110.002 0/0:42:42,0:42:1600:0:0:0,-12.6433,-144.265 0/0:46:44,2:44:1694:2:78:0,-6.44391,-145.317 0/1:23:18,5:18:670:5:193:-10.8177,0,-53.706 dDocent_Contig_1505 42 . G A 82.8957 . AB=0.123077;ABP=83.2212;AC=2;AF=0.25;AN=8;AO=10;CIGAR=1X;DP=165;DPB=165;DPRA=0.553763;EPP=24.725;EPPR=339.589;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.7;PAIREDR=0.729032;PAO=0;PQA=0;PQR=0;PRO=0;QA=410;QR=6201;RO=155;RPL=0;RPP=24.725;RPPR=339.589;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=155;SRP=339.589;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:40:35,5:35:1411:5:205:-6.79381,0,-115.201 0/0:38:36,2:36:1455:2:82:0,-3.65946,-123.417 0/0:62:62,0:62:2464:0:0:0,-18.6639,-221.9 0/1:25:22,3:22:871:3:123:-3.93904,0,-71.1707 dDocent_Contig_1506 7 . A T 2013.08 . AB=0.390863;ABP=23.3913;AC=4;AF=0.5;AN=8;AO=77;CIGAR=1X;DP=197;DPB=197;DPRA=0;EPP=170.214;EPPR=263.587;GTI=0;LEN=1;MEANALT=1;MQM=59.974;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2942;QR=4596;RO=120;RPL=0;RPP=170.214;RPPR=263.587;RPR=77;RUN=1;SAF=77;SAP=170.214;SAR=0;SRF=120;SRP=263.587;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:40:31,9:31:1201:9:348:-19.6391,0,-96.3451 0/1:50:29,21:29:1111:21:802:-57.4535,0,-85.2413 0/1:56:18,38:18:687:38:1451:-114.012,0,-45.3061 0/1:51:42,9:42:1597:9:341:-15.6928,0,-128.648 dDocent_Contig_1507 7 . T C 132.224 . AB=0.272727;ABP=12.8806;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=111;DPB=111;DPRA=0.754902;EPP=20.3821;EPPR=226.672;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.875;PAIREDR=0.951456;PAO=0;PQA=0;PQR=0;PRO=0;QA=308;QR=3933;RO=103;RPL=0;RPP=20.3821;RPPR=226.672;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=103;SRP=226.672;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:34:34,0:34:1297:0:0:0,-10.235,-117.017 0/0:30:29,1:29:1107:1:39:0,-5.13434,-96.0356 0/0:25:24,1:24:914:1:39:0,-3.62919,-78.6798 0/1:22:16,6:16:615:6:230:-14.4442,0,-49.0668 dDocent_Contig_1508 31 . C T 454.425 . AB=0.138462;ABP=298.197;AC=2;AF=0.25;AN=8;AO=41;CIGAR=1X;DP=491;DPB=491;DPRA=0;EPP=92.0407;EPPR=971.487;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.993274;PAO=0;PQA=0;PQR=0;PRO=0;QA=1583;QR=17851;RO=446;RPL=0;RPP=92.0407;RPPR=971.487;RPR=41;RUN=1;SAF=41;SAP=92.0407;SAR=0;SRF=446;SRP=971.487;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:129:125,4:125:5022:4:157:0,-24.325,-437.332 0/0:102:101,1:101:4024:1:40:0,-26.7094,-358.147 0/1:163:136,26:136:5475:26:998:-41.2679,0,-443.713 0/1:97:84,10:84:3330:10:388:-6.61828,0,-271.092 dDocent_Contig_1509 54 . T A 21892.6 . AB=0.864964;ABP=320.014;AC=6;AF=0.75;AN=8;AO=674;CIGAR=1X;DP=746;DPB=746;DPRA=0;EPP=1466.58;EPPR=155.013;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.995549;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=26599;QR=2791;RO=70;RPL=674;RPP=1466.58;RPPR=155.013;RPR=0;RUN=1;SAF=674;SAP=1466.58;SAR=0;SRF=70;SRP=155.013;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:246:20,224:20:789:224:8864:-725.939,-2.3814,0 1/1:226:13,213:13:522:213:8340:-702.856,-20.7099,0 0/1:156:25,131:25:998:131:5160:-417.318,0,-43.1571 0/1:118:12,106:12:482:106:4235:-345.59,0,-8.20864 dDocent_Contig_1510 49 . G A 3082.57 . AB=0.476395;ABP=4.13797;AC=4;AF=0.5;AN=8;AO=111;CIGAR=1X2M1X;DP=233;DPB=233;DPRA=0;EPP=244.044;EPPR=261.416;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4246;QR=4580;RO=119;RPL=111;RPP=244.044;RPPR=261.416;RPR=0;RUN=1;SAF=111;SAP=244.044;SAR=0;SRF=119;SRP=261.416;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:57:28,29,0:28:1073:29,0:1116,0:-83.5811,0,-79.7061,-92.0099,-88.4359,-180.062 0|1:72:35,37,0:35:1344:37,0:1438,0:-108.017,0,-99.5629,-118.553,-110.701,-228.868 0|1:50:24,26,0:24:922:26,0:984,0:-73.8128,0,-68.2387,-81.0375,-76.0654,-156.722 0|1:54:32,19,3:32:1241:19,3:708,106:-48.3355,0,-96.2666,-49.3387,-93.3567,-150.4 dDocent_Contig_1511 1 . N A 113.228 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=3;CIGAR=1X1M14I4M;DP=3;DPB=10;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=114;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:2:0,2:0:0:2:75:-7.12034,-0.60206,0 1|1:1:0,1:0:0:1:39:-3.89656,-0.30103,0 .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. dDocent_Contig_1513 52 . C A 275.448 . AB=0.0409091;ABP=808.508;AC=0;AF=0;AN=8;AO=21;CIGAR=5M1X3M;DP=580;DPB=563.778;DPRA=0;EPP=48.6112;EPPR=615.413;GTI=0;LEN=1;MEANALT=27;MQM=51.4762;MQMR=59.3091;NS=4;NUMALT=5;ODDS=0;PAIRED=1;PAIREDR=0.996845;PAO=0;PQA=0;PQR=0;PRO=0;QA=260;QR=10122;RO=317;RPL=21;RPP=48.6112;RPPR=615.413;RPR=0;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=317;SRP=691.367;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:145:78,9,5,7,10,4:78:2489:9,5,7,10,4:331,138,277,286,42:-3.59933,0,-197.724,-16.1667,-189.523,-215.083,-4.2647,-177.63,-193.786,-202.588,-4.35644,-177.718,-193.874,-181.981,-201.773,-24.5134,-197.863,-214.019,-202.126,-202.214,-223.724 0|0:155:85,11,10,14,6,3:85:2718:11,10,14,6,3:337,166,514,206,27:-16.4271,-15.0018,-230.636,-30.1059,-222.033,-246.027,0,-191.953,-207.043,-214.743,-25.2905,-217.229,-232.319,-202.239,-242.428,-40.5728,-232.502,-247.592,-217.513,-242.789,-258.603 0|0:140:72,6,3,10,3,11:72:2278:6,3,10,3,11:195,87,402,79,158:-11.4833,-17.684,-199.088,-26.2317,-193.971,-208.534,0,-167.756,-176.3,-180.213,-26.9502,-194.689,-203.232,-177.018,-209.252,-22.2684,-190,-198.543,-172.329,-199.261,-202.155 0|0:140:82,9,7,5,6,3:82:2637:9,7,5,6,3:297,227,196,117,33:0,-0.669392,-209.823,-6.38677,-194.243,-216.139,-8.55567,-196.413,-202.127,-218.911,-15.9709,-203.817,-209.53,-211.7,-226.014,-22.6463,-210.491,-216.204,-218.374,-225.778,-233.59 dDocent_Contig_1515 10 . C A 13798 . AB=0.691149;ABP=171.53;AC=5;AF=0.625;AN=8;AO=432;CIGAR=1X3M1X;DP=606;DPB=606;DPRA=0;EPP=941.086;EPPR=298.331;GTI=0;LEN=1;MEANALT=3;MQM=59.9444;MQMR=60;NS=4;NUMALT=2;ODDS=5.55112e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=17229;QR=5383;RO=136;RPL=0;RPP=941.086;RPPR=298.331;RPR=432;RUN=1;SAF=432;SAP=941.086;SAR=0;SRF=136;SRP=298.331;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:177:65,3,103:65:2563:3,103:122,4120:-319.377,-328.881,-538.838,0,-200.79,-179.848 0|1:183:37,17,126:37:1457:17,126:681,5031:-403.216,-358.25,-472.98,0,-63.7382,-81.9136 0|1:171:30,3,138:30:1202:3,138:123,5475:-441.631,-440.509,-538.633,0,-88.8642,-57.4751 1|1:75:4,6,65:4:161:6,65:231,2603:-219.541,-201.784,-213.247,-6.29066,-0.614421,0 dDocent_Contig_1516 42 . C A 288.822 . 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T C 133.022 . AB=0.184211;ABP=35.9253;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=145;DPB=145;DPRA=1.06542;EPP=18.2106;EPPR=302.673;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=281;QR=5428;RO=138;RPL=0;RPP=18.2106;RPPR=302.673;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=138;SRP=302.673;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:38:31,7:31:1223:7:281:-14.223,0,-98.9059 0/0:65:65,0:65:2558:0:0:0,-19.5669,-230.351 0/0:16:16,0:16:630:0:0:0,-4.81648,-57.0313 0/0:26:26,0:26:1017:0:0:0,-7.82678,-91.8194 dDocent_Contig_1521 98 . N A 1994.49 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=64;CIGAR=1X;DP=64;DPB=64;DPRA=0;EPP=141.985;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=0.984375;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=2195;QR=0;RO=0;RPL=64;RPP=141.985;RPPR=0;RPR=0;RUN=1;SAF=64;SAP=141.985;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:18:0,18:0:0:18:614:-55.5825,-5.41854,0 1/1:29:0,29:0:0:29:1003:-90.5826,-8.72987,0 1/1:8:0,8:0:0:8:275:-25.085,-2.40824,0 1/1:9:0,9:0:0:9:303:-27.5971,-2.70927,0 dDocent_Contig_1525 9 . T C 129.442 . AB=0.163934;ABP=62.8504;AC=3;AF=0.375;AN=8;AO=10;CIGAR=1X;DP=76;DPB=76;DPRA=1.35556;EPP=24.725;EPPR=146.327;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=377;QR=2538;RO=66;RPL=0;RPP=24.725;RPPR=146.327;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=66;SRP=146.327;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:20,6:20:773:6:233:-13.5133,0,-62.0717 0/1:20:18,2:18:698:2:78:-1.38287,0,-57.1337 0/0:15:15,0:15:573:0:0:0,-4.51545,-51.9119 0/1:15:13,2:13:494:2:66:-1.75108,0,-40.289 dDocent_Contig_1526 16 . T C 693.4 . AB=0.269231;ABP=51.1168;AC=1;AF=0.125;AN=8;AO=44;CIGAR=1X;DP=326;DPB=326;DPRA=0;EPP=98.5551;EPPR=604.539;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=59.8648;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.975089;PAO=0;PQA=0;PQR=0;PRO=0;QA=1775;QR=11309;RO=281;RPL=0;RPP=98.5551;RPPR=613.194;RPR=44;RUN=1;SAF=44;SAP=98.5551;SAR=0;SRF=280;SRP=604.539;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:80:74,6:74:2953:6:246:0,-1.56228,-243.258 0/1:104:75,28:75:3036:28:1129:-70.5617,0,-241.973 0/0:96:89,7:89:3584:7:280:0,-3.32843,-296.986 0/0:46:43,3:43:1736:3:120:0,-2.65969,-145.268 dDocent_Contig_1527 9 . T A 169.048 . AB=0.368421;ABP=5.8675;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=95;DPB=95;DPRA=0.75;EPP=18.2106;EPPR=194.1;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=261;QR=3411;RO=88;RPL=0;RPP=18.2106;RPPR=194.1;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=88;SRP=194.1;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:38:38,0:38:1470:0:0:0,-11.4391,-132.575 0/0:22:22,0:22:851:0:0:0,-6.62266,-76.9126 0/1:19:12,7:12:466:7:261:-18.1267,0,-36.5726 0/0:16:16,0:16:624:0:0:0,-4.81648,-56.5002 dDocent_Contig_1528 65 . G T 123.416 . AB=0.3125;ABP=7.89611;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=106;DPB=106;DPRA=0.533333;EPP=13.8677;EPPR=222.329;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=200;QR=3948;RO=101;RPL=5;RPP=13.8677;RPPR=222.329;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=101;SRP=222.329;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:39:39,0:39:1522:0:0:0,-11.7402,-137.223 0/0:33:33,0:33:1312:0:0:0,-9.93399,-118.345 0/0:18:18,0:18:699:0:0:0,-5.41854,-63.2366 0/1:16:11,5:11:415:5:200:-13.5634,0,-32.8644 dDocent_Contig_1529 57 . T A 3824.85 . AB=0.182788;ABP=1150.58;AC=4;AF=0.5;AN=8;AO=240;CIGAR=2X;DP=1313;DPB=1313;DPRA=0;EPP=498.432;EPPR=1892.73;GTI=0;LEN=1;MEANALT=4;MQM=55.9292;MQMR=59.917;NS=4;NUMALT=1;ODDS=0;PAIRED=0.929167;PAIREDR=0.871094;PAO=0;PQA=0;PQR=0;PRO=0;QA=8935;QR=36822;RO=1024;RPL=240;RPP=524.164;RPPR=2226.6;RPR=0;RUN=1;SAF=237;SAP=498.432;SAR=3;SRF=984;SRP=1892.73;SRR=40;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:305:237,59:237:8436:59:2120:-101.573,0,-669.671 0|1:366:294,59:294:10780:59:2261:-86.9681,0,-863.161 0|1:404:314,71:314:11178:71:2633:-115.07,0,-889.541 0|1:238:179,51:179:6428:51:1921:-84.3626,0,-508.929 dDocent_Contig_1531 99 . N A 420.554 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=17;CIGAR=4X;DP=17;DPB=17;DPRA=0;EPP=39.9253;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=28.9412;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=572;QR=0;RO=0;RPL=17;RPP=39.9253;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=39.9253;SAR=17;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:3:0,3:0:0:3:102:-6.3475,-0.90309,0 1|1:7:0,7:0:0:7:232:-17.7529,-2.10721,0 1|1:4:0,4:0:0:4:136:-11.0044,-1.20412,0 1|1:3:0,3:0:0:3:102:-6.3475,-0.90309,0 dDocent_Contig_1534 98 . N C 92.1433 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=3;CIGAR=3X;DP=3;DPB=49.3333;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0.333333;PAIREDR=0;PAO=85;PQA=2810;PQR=0;PRO=0;QA=99;QR=0;RO=0;RPL=3;RPP=9.52472;RPPR=0;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:1:0,1:0:0:1:35:-3.14897,-0.30103,0 .:.:.:.:.:.:.:. 1|1:2:0,2:0:0:2:64:-5.75931,-0.60206,0 .:.:.:.:.:.:.:. dDocent_Contig_1536 34 . T C 10617.1 . AB=0.0457831;ABP=746.695;AC=0;AF=0;AN=8;AO=19;CIGAR=1X1M1X3M;DP=415;DPB=415;DPRA=0;EPP=44.2683;EPPR=92.0407;GTI=0;LEN=1;MEANALT=4;MQM=57.8421;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=0.97561;PAO=0;PQA=0;PQR=0;PRO=0;QA=736;QR=1624;RO=41;RPL=0;RPP=44.2683;RPPR=92.0407;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:170:14,10,7,135:14:554:10,7,135:381,278,5366:-437.541,-410.514,-453.099,-418.869,-433.223,-462.357,0,-14.3594,-22.7097,-4.95812 0|0:130:16,6,4,103:16:633:6,4,103:238,160,4117:-334.284,-319.51,-369.799,-325.921,-358.425,-376.811,0,-32.5024,-38.9127,-21.0871 0|0:62:5,2,6,48:5:200:2,6,48:76,240,1901:-158.242,-153.912,-169.786,-139.976,-150.618,-154.646,-3.29563,-13.9443,0,-5.32492 0|0:53:6,1,4,42:6:237:1,4,42:41,148,1686:-137.136,-135.558,-154.758,-126.839,-142.955,-145.135,0,-16.1245,-7.41435,-6.86758 dDocent_Contig_1539 76 . G C 1854.84 . AB=0.59322;ABP=11.917;AC=4;AF=0.5;AN=8;AO=70;CIGAR=1X;DP=118;DPB=118;DPRA=0;EPP=155.013;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=0.985714;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2502;QR=1703;RO=48;RPL=70;RPP=155.013;RPPR=107.241;RPR=0;RUN=1;SAF=70;SAP=155.013;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:13,17:13:461:17:617:-46.8316,0,-32.7938 0/1:22:4,18:4:148:18:639:-51.2113,0,-7.05931 0/1:32:16,16:16:570:16:590:-43.8051,0,-41.9976 0/1:34:15,19:15:524:19:656:-49.125,0,-37.2537 dDocent_Contig_1540 40 . A G 9605.34 . AB=0.383661;ABP=116.693;AC=4;AF=0.5;AN=8;AO=371;CIGAR=1X;DP=967;DPB=967;DPRA=0;EPP=799.964;EPPR=1297.21;GTI=0;LEN=1;MEANALT=1;MQM=59.9542;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.998322;PAO=0;PQA=0;PQR=0;PRO=0;QA=13962;QR=23331;RO=596;RPL=1;RPP=799.964;RPPR=1297.21;RPR=370;RUN=1;SAF=371;SAP=808.627;SAR=0;SRF=596;SRP=1297.21;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:301:187,114:187:7241:114:4287:-295.267,0,-560.808 0/1:266:173,93:173:6776:93:3521:-236.96,0,-529.535 0/1:268:166,102:166:6539:102:3816:-262.888,0,-507.624 0/1:132:70,62:70:2775:62:2338:-170.909,0,-210.152 dDocent_Contig_1541 13 . T G 9860.82 . AB=0.328014;ABP=292.817;AC=4;AF=0.5;AN=8;AO=370;CIGAR=1X;DP=1128;DPB=1128;DPRA=0;EPP=806.455;EPPR=1646.81;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=14791;QR=30481;RO=757;RPL=0;RPP=806.455;RPPR=1646.81;RPR=370;RUN=1;SAF=370;SAP=806.455;SAR=0;SRF=757;SRP=1646.81;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:288:221,67:221:8892:67:2681:-154.708,0,-713.022 0/1:306:216,90:216:8723:90:3572:-229.393,0,-692.396 0/1:250:156,93:156:6278:93:3709:-258.465,0,-489.395 0/1:284:164,120:164:6588:120:4829:-349.005,0,-507.122 dDocent_Contig_1542 95 . T G 45.8833 . AB=0.116883;ABP=101.178;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X;DP=254;DPB=254;DPRA=1.30508;EPP=22.5536;EPPR=535.021;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=315;QR=8526;RO=245;RPL=9;RPP=22.5536;RPPR=535.021;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=245;SRP=535.021;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:77:68,9:68:2372:9:315:-5.50913,0,-190.556 0/0:94:94,0:94:3301:0:0:0,-28.2968,-297.306 0/0:42:42,0:42:1442:0:0:0,-12.6433,-130.07 0/0:41:41,0:41:1411:0:0:0,-12.3422,-127.282 dDocent_Contig_1543 36 . A T 254.818 . AB=0.230769;ABP=35.7494;AC=2;AF=0.25;AN=8;AO=12;CIGAR=1X;DP=75;DPB=75;DPRA=2.26087;EPP=29.068;EPPR=139.813;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=476;QR=2518;RO=63;RPL=0;RPP=29.068;RPPR=139.813;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=63;SRP=139.813;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:14:14,0:14:560:0:0:0,-4.21442,-50.7386 0/1:35:30,5:30:1207:5:191:-7.01863,0,-98.3677 0/0:9:9,0:9:352:0:0:0,-2.70927,-32.037 0/1:17:10,7:10:399:7:285:-20.9069,0,-31.1484 dDocent_Contig_1544 9 . G A 880.219 . AB=0.147541;ABP=529.575;AC=3;AF=0.375;AN=8;AO=85;CIGAR=1X;DP=640;DPB=640;DPRA=0;EPP=187.585;EPPR=1206.01;GTI=0;LEN=1;MEANALT=1.25;MQM=48.4824;MQMR=59.9801;NS=4;NUMALT=1;ODDS=0;PAIRED=0.2;PAIREDR=0.702166;PAO=0;PQA=0;PQR=0;PRO=0;QA=3216;QR=21301;RO=554;RPL=0;RPP=187.585;RPPR=1206.01;RPR=85;RUN=1;SAF=85;SAP=187.585;SAR=0;SRF=554;SRP=1206.01;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:238:195,42:195:7489:42:1602:-68.9867,0,-602.096 0/0:152:139,13:139:5360:13:508:0,-0.108039,-436.735 0/1:186:163,23:163:6260:23:843:-18.5705,0,-507.327 0/1:64:57,7:57:2192:7:263:-4.42866,0,-178.23 dDocent_Contig_1545 14 . G A 924.013 . AB=0;ABP=0;AC=2;AF=0.25;AN=8;AO=4;CIGAR=3X2M1X;DP=54;DPB=54.1667;DPRA=0;EPP=3.0103;EPPR=44.2683;GTI=0;LEN=1;MEANALT=2;MQM=18.5;MQMR=60;NS=4;NUMALT=2;ODDS=3.46945e-18;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=160;QR=740;RO=19;RPL=0;RPP=11.6962;RPPR=44.2683;RPR=4;RUN=1;SAF=2;SAP=3.0103;SAR=2;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:27:9,0,18:9:352:0,18:0,701:-55.2831,-57.9924,-86.932,0,-29.3297,-23.9112 0|0:15:8,0,6:8:310:0,6:0,243:-17.8559,-20.2641,-45.7405,0,-25.6853,-23.8791 0|0:7:2,0,5:2:78:0,5:0,205:-16.7278,-17.3299,-23.7358,0,-6.80124,-5.29609 1|1:5:0,4,0:0:0:4,0:160,0:-6.50069,-1.20412,0,-6.50069,-1.20412,-6.50069 dDocent_Contig_1546 12 . G C 2745.29 . AB=0.367647;ABP=44.396;AC=2;AF=0.25;AN=8;AO=120;CIGAR=1X;DP=561;DPB=561;DPRA=0;EPP=263.587;EPPR=958.458;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4790;QR=17309;RO=440;RPL=0;RPP=263.587;RPPR=958.458;RPR=120;RUN=1;SAF=120;SAP=263.587;SAR=0;SRF=440;SRP=958.458;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:209:195,14:195:7680:14:562:0,-11.9913,-639.929 0/1:168:95,72:95:3728:72:2866:-207.375,0,-284.889 0/0:80:74,6:74:2932:6:244:0,-1.74357,-241.654 0/1:104:76,28:76:2969:28:1118:-69.5978,0,-236.01 dDocent_Contig_1547 10 . T G 14349 . AB=0.518047;ABP=5.67508;AC=4;AF=0.5;AN=8;AO=488;CIGAR=1X;DP=942;DPB=942;DPRA=0;EPP=1062.69;EPPR=988.859;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=19159;QR=17568;RO=454;RPL=0;RPP=1062.69;RPPR=988.859;RPR=488;RUN=1;SAF=488;SAP=1062.69;SAR=0;SRF=454;SRP=988.859;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:210:109,101:109:4201:101:3999:-296.687,0,-314.904 0/1:303:140,163:140:5441:163:6418:-486.159,0,-398.402 0/1:283:125,158:125:4859:158:6162:-469.16,0,-352.085 0/1:146:80,66:80:3067:66:2580:-188.383,0,-232.209 dDocent_Contig_1548 107 . N A 13163.5 . AB=0.572347;ABP=31.2883;AC=8;AF=1;AN=8;AO=356;CIGAR=1X7M;DP=622;DPB=1047.88;DPRA=0;EPP=776.054;EPPR=0;GTI=0;LEN=1;MEANALT=6;MQM=41.0927;MQMR=0;NS=4;NUMALT=3;ODDS=0;PAIRED=0.00561798;PAIREDR=0;PAO=71.5;PQA=2391.33;PQR=2391.33;PRO=71.5;QA=12607;QR=0;RO=0;RPL=0;RPP=776.054;RPPR=0;RPR=356;RUN=1;SAF=0;SAP=776.054;SAR=356;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:125:0,15,30,78:0:0:15,30,78:507,893,2756:-282.452,-242.683,-238.168,-215.549,-175.78,-206.518,-66.9061,-27.1357,0,-43.4258 1|1:117:0,27,33,53:0:0:27,33,53:913,1063,1889:-228.689,-157.95,-149.823,-147.344,-76.6042,-137.41,-81.3473,-10.6066,0,-65.3927 1|1:233:0,41,52,132:0:0:41,52,132:1373,1559,4657:-479.129,-375.495,-363.153,-364.383,-260.749,-348.729,-114.749,-11.1129,0,-75.0127 1|1:147:0,28,23,93:0:0:28,23,93:936,736,3305:-331.566,-257.785,-249.356,-274.325,-200.543,-267.402,-73.7838,0,-16.5413,-45.788 dDocent_Contig_1550 140 . C T 46.9188 . AB=0.131579;ABP=47.8112;AC=2;AF=0.25;AN=8;AO=5;CIGAR=1X;DP=79;DPB=79;DPRA=0.926829;EPP=13.8677;EPPR=163.699;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=197;QR=2875;RO=74;RPL=0;RPP=13.8677;RPPR=163.699;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=163.699;SRR=74;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:15,3:15:592:3:116:-5.39848,0,-48.2017 0/0:14:14,0:14:539:0:0:0,-4.21442,-48.8436 0/0:27:27,0:27:1029:0:0:0,-8.12781,-92.8946 0/1:20:18,2:18:715:2:81:-1.66513,0,-58.6552 dDocent_Contig_1551 8 . T C 3009.62 . AB=0.769231;ABP=68.4885;AC=5;AF=0.625;AN=8;AO=97;CIGAR=1X;DP=121;DPB=121;DPRA=0;EPP=213.643;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3722;QR=928;RO=24;RPL=0;RPP=213.643;RPPR=55.1256;RPR=97;RUN=1;SAF=97;SAP=213.643;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:52:15,37:15:579:37:1424:-112.785,0,-36.7989 0/1:36:4,32:4:155:32:1233:-100.426,0,-3.48836 1/1:17:0,17:0:0:17:652:-59.0155,-5.11751,0 0/1:16:5,11:5:194:11:413:-32.701,0,-13.0164 dDocent_Contig_1552 24 . T C 1331.31 . AB=0.652174;ABP=16.8888;AC=4;AF=0.5;AN=8;AO=45;CIGAR=1X;DP=69;DPB=69;DPRA=0;EPP=43.5927;EPPR=46.8017;GTI=0;LEN=1;MEANALT=1;MQM=56.5556;MQMR=59.375;NS=4;NUMALT=1;ODDS=0;PAIRED=0.933333;PAIREDR=0.75;PAO=0;PQA=0;PQR=0;PRO=0;QA=1758;QR=830;RO=24;RPL=0;RPP=100.727;RPPR=55.1256;RPR=45;RUN=1;SAF=37;SAP=43.5927;SAR=8;SRF=1;SRP=46.8017;SRR=23;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:2,13:2:69:13:498:-40.5771,0,-2.03721 0/1:32:9,23:9:320:23:902:-71.7327,0,-19.5073 0/1:18:11,7:11:374:7:283:-20.3815,0,-28.5659 0/1:4:2,2:2:67:2:75:-5.8966,0,-5.15892 dDocent_Contig_1553 7 . T C 1113.81 . AB=0.123608;ABP=1108.03;AC=3;AF=0.375;AN=8;AO=150;CIGAR=2X;DP=1464;DPB=1464;DPRA=0;EPP=328.731;EPPR=2851.98;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5772;QR=50214;RO=1312;RPL=0;RPP=328.731;RPPR=2851.98;RPR=150;RUN=1;SAF=150;SAP=328.731;SAR=0;SRF=1312;SRP=2851.98;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:566:527,39:527:20203:39:1497:0,-35.3772,-1682.18 0|1:465:404,60:404:15426:60:2304:-67.5095,0,-1247.55 0|1:310:271,39:271:10367:39:1508:-42.674,0,-839.351 0|1:123:110,12:110:4218:12:463:-5.16447,0,-342.861 dDocent_Contig_1554 8 . T C 1942.8 . AB=0.62037;ABP=16.6021;AC=4;AF=0.5;AN=8;AO=67;CIGAR=1X;DP=108;DPB=108;DPRA=0;EPP=148.499;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2566;QR=1567;RO=41;RPL=0;RPP=148.499;RPPR=92.0407;RPR=67;RUN=1;SAF=67;SAP=148.499;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:7,14:7:273:14:533:-41.9906,0,-18.6164 0/1:27:16,11:16:609:11:415:-29.5693,0,-47.0208 0/1:25:14,11:14:535:11:423:-30.8976,0,-40.9683 0/1:35:4,31:4:150:31:1195:-97.3099,0,-3.32862 dDocent_Contig_1555 27 . G C 6884.5 . AB=0.617647;ABP=27.5352;AC=5;AF=0.625;AN=8;AO=211;CIGAR=1X2M;DP=294;DPB=294;DPRA=0;EPP=461.191;EPPR=161.528;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=8350;QR=2902;RO=73;RPL=0;RPP=461.191;RPPR=161.528;RPR=211;RUN=1;SAF=211;SAP=461.191;SAR=0;SRF=73;SRP=161.528;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:90:0,5,85:0:0:5,85:186,3359:-302.005,-286.784,-285.279,-25.5876,-9.99398,0 0|1:87:36,0,51:36:1437:0,51:0,2036:-157.244,-168.081,-286.428,0,-118.747,-103.394 0|1:59:5,0,54:5:201:0,54:0,2131:-174.224,-175.729,-192.294,0,-16.966,-0.710331 0|1:58:32,5,21:32:1264:5,21:203,824:-58.1156,-51.0036,-153.508,0,-87.255,-97.6773 dDocent_Contig_1556 134 . T A 90.0304 . AB=0.160714;ABP=59.0033;AC=2;AF=0.25;AN=8;AO=9;CIGAR=1X;DP=111;DPB=111;DPRA=1.01818;EPP=22.5536;EPPR=224.5;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=307;QR=3540;RO=102;RPL=0;RPP=22.5536;RPPR=224.5;RPR=9;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=224.5;SRR=102;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:39:33,6:33:1136:6:203:-6.86135,0,-90.7985 0/0:31:31,0:31:1060:0:0:0,-9.33193,-95.7006 0/0:24:24,0:24:848:0:0:0,-7.22472,-76.6386 0/1:17:14,3:14:496:3:104:-4.5853,0,-39.855 dDocent_Contig_1557 68 . C G 6555.64 . AB=0.479839;ABP=4.76149;AC=4;AF=0.5;AN=8;AO=238;CIGAR=1X;DP=496;DPB=496;DPRA=0;EPP=519.821;EPPR=561.079;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.848739;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=8995;QR=9758;RO=257;RPL=238;RPP=519.821;RPPR=561.079;RPR=0;RUN=1;SAF=238;SAP=519.821;SAR=0;SRF=257;SRP=561.079;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:168:94,73:94:3574:73:2761:-198.041,0,-271.152 0/1:146:55,91:55:2091:91:3438:-265.605,0,-144.472 0/1:97:54,43:54:2034:43:1636:-118.304,0,-154.09 0/1:85:54,31:54:2059:31:1160:-79.1039,0,-159.954 dDocent_Contig_1558 10 . G A 3092.49 . AB=0.084507;ABP=109.474;AC=4;AF=0.5;AN=8;AO=6;CIGAR=2X1M;DP=354;DPB=354;DPRA=0;EPP=16.0391;EPPR=487.249;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0.00896861;PAO=0;PQA=0;PQR=0;PRO=0;QA=228;QR=8179;RO=223;RPL=0;RPP=16.0391;RPPR=487.249;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=223;SRP=487.249;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:124:80,44,0:80:2954:44,0:1662,0:-112.517,0,-228.715,-136.599,-241.96,-378.185 0|1:87:56,31,0:56:2059:31,0:1174,0:-79.7681,0,-159.361,-96.6258,-168.693,-264.944 0|1:72:48,24,0:48:1767:24,0:868,0:-56.7628,0,-137.618,-71.2122,-144.843,-215.691 0|1:71:39,26,6:39:1399:26,6:948,228:-65.6907,0,-106.243,-58.7341,-95.3733,-171.013 dDocent_Contig_1559 48 . C T 5912.54 . AB=0.65411;ABP=63.2463;AC=4;AF=0.5;AN=8;AO=191;CIGAR=1X;DP=292;DPB=292;DPRA=0;EPP=417.762;EPPR=222.329;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.994764;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7598;QR=3979;RO=101;RPL=0;RPP=417.762;RPPR=222.329;RPR=191;RUN=1;SAF=191;SAP=417.762;SAR=0;SRF=101;SRP=222.329;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:75:25,50:25:986:50:1960:-154.028,0,-66.4608 0/1:93:27,66:27:1071:66:2618:-207.76,0,-68.6818 0/1:86:36,50:36:1407:50:2017:-155.827,0,-100.996 0/1:38:13,25:13:515:25:1003:-79.1278,0,-35.2534 dDocent_Contig_1560 7 . T G 505.146 . AB=0.182609;ABP=204.259;AC=1;AF=0.125;AN=8;AO=62;CIGAR=1X;DP=714;DPB=714;DPRA=0;EPP=137.642;EPPR=1416.64;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=59.7005;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.993856;PAO=0;PQA=0;PQR=0;PRO=0;QA=1958;QR=24741;RO=651;RPL=0;RPP=137.642;RPPR=1416.64;RPR=62;RUN=1;SAF=62;SAP=137.642;SAR=0;SRF=651;SRP=1416.64;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:230:188,42:188:7100:42:1338:-51.4354,0,-569.637 0/0:209:206,3:206:7865:3:72:0,-56.1965,-700.935 0/0:151:140,11:140:5328:11:359:0,-12.833,-444.741 0/0:124:117,6:117:4448:6:189:0,-19.9526,-378.862 dDocent_Contig_1561 7 . T C 3031.25 . AB=0.324468;ABP=103.637;AC=4;AF=0.5;AN=8;AO=122;CIGAR=1X1M1X;DP=376;DPB=376;DPRA=0;EPP=267.93;EPPR=543.707;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4671;QR=9451;RO=249;RPL=0;RPP=267.93;RPPR=543.707;RPR=122;RUN=1;SAF=122;SAP=267.93;SAR=0;SRF=249;SRP=543.707;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:127:64,61:64:2424:61:2329:-171.818,0,-180.365 0|1:77:49,27:49:1850:27:1030:-69.7428,0,-143.485 0|1:109:88,20:88:3349:20:772:-37.041,0,-268.799 0|1:63:48,14:48:1828:14:540:-30.0132,0,-145.85 dDocent_Contig_1562 82 . T A 979.041 . AB=0.28022;ABP=79.3698;AC=4;AF=0.5;AN=8;AO=51;CIGAR=1X;DP=182;DPB=182;DPRA=0;EPP=113.755;EPPR=287.473;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1743;QR=4488;RO=131;RPL=51;RPP=113.755;RPPR=287.473;RPR=0;RUN=1;SAF=51;SAP=113.755;SAR=0;SRF=131;SRP=287.473;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:40:27,13:27:934:13:448:-28.6088,0,-72.3333 0/1:63:50,13:50:1687:13:436:-20.597,0,-133.149 0/1:41:26,15:26:901:15:517:-34.5156,0,-69.0638 0/1:38:28,10:28:966:10:342:-19.6721,0,-75.8142 dDocent_Contig_1563 31 . T C 3474.69 . AB=0.672619;ABP=46.4914;AC=4;AF=0.5;AN=8;AO=113;CIGAR=1X;DP=168;DPB=168;DPRA=0;EPP=248.387;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=0.973451;PAIREDR=0.6;PAO=0;PQA=0;PQR=0;PRO=0;QA=4471;QR=2145;RO=55;RPL=0;RPP=248.387;RPPR=122.441;RPR=113;RUN=1;SAF=113;SAP=248.387;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:52:18,34:18:703:34:1352:-106.291,0,-47.9446 0/1:57:16,41:16:624:41:1623:-129.146,0,-39.3364 0/1:37:16,21:16:615:21:812:-62.254,0,-44.5355 0/1:22:5,17:5:203:17:684:-55.2672,0,-12.0304 dDocent_Contig_1564 30 . T C 28316.7 . AB=0.19072;ABP=2277.03;AC=7;AF=0.875;AN=8;AO=522;CIGAR=1X2M1X9M1X;DP=2737;DPB=2737;DPRA=0;EPP=1136.52;EPPR=1101.78;GTI=0;LEN=1;MEANALT=25.5;MQM=59.3238;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=0.940613;PAIREDR=0.942688;PAO=0;PQA=0;PQR=0;PRO=0;QA=20348;QR=19728;RO=506;RPL=0;RPP=1136.52;RPPR=1101.78;RPR=522;RUN=1;SAF=522;SAP=1136.52;SAR=0;SRF=506;SRP=1101.78;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:938:190,397,196,61:190:7413:397,196,61:15586,7610,2350:-892.28,-13.0957,-502.924,-327.027,0,-877.377,-765.441,-438.403,-752.344,-1356.42 1|1:775:143,329,164,39:143:5584:329,164,39:12872,6395,1420:-761.687,-66.483,-426.467,-279.211,0,-688.881,-694.079,-414.855,-627.594,-1141.37 0|1:705:116,371,104,27:116:4522:371,104,27:14507,4085,1047:-861.541,0,-259.989,-560.752,-35.9722,-901.127,-812.135,-287.348,-848.109,-1175.69 1|1:319:57,149,58,12:57:2209:149,58,12:5830,2258,462:-321.649,-4.08878,-140.706,-153.235,0,-317.26,-301.718,-148.472,-297.629,-479.584 dDocent_Contig_1565 17 . C A 70.2912 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=4.89285;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=74;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:74:-7.02588,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_1567 9 . G C 1358.08 . AB=0.209091;ABP=245.584;AC=4;AF=0.5;AN=8;AO=69;CIGAR=1X;DP=330;DPB=330;DPRA=0;EPP=152.842;EPPR=569.765;GTI=0;LEN=1;MEANALT=1;MQM=59.0435;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2669;QR=10007;RO=261;RPL=0;RPP=152.842;RPPR=569.765;RPR=69;RUN=1;SAF=69;SAP=152.842;SAR=0;SRF=261;SRP=569.765;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:89:70,19:70:2704:19:736:-39.758,0,-216.751 0/1:55:36,19:36:1366:19:729:-48.5247,0,-106.666 0/1:79:65,14:65:2512:14:546:-25.6927,0,-202.493 0/1:107:90,17:90:3425:17:658:-27.322,0,-276.17 dDocent_Contig_1568 9 . G A 3917.78 . AB=0.346667;ABP=94.907;AC=4;AF=0.5;AN=8;AO=156;CIGAR=1X;DP=450;DPB=450;DPRA=0;EPP=341.76;EPPR=641.423;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5907;QR=11247;RO=294;RPL=0;RPP=341.76;RPPR=641.423;RPR=156;RUN=1;SAF=156;SAP=341.76;SAR=0;SRF=294;SRP=641.423;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:195:135,60:135:5184:60:2233:-142.491,0,-407.854 0/1:127:70,57:70:2685:57:2192:-159.273,0,-203.606 0/1:67:51,16:51:1914:16:591:-33.356,0,-152.332 0/1:61:38,23:38:1464:23:891:-62.1469,0,-113.673 dDocent_Contig_1569 37 . T A 209.552 . AB=0.166667;ABP=72.4974;AC=1;AF=0.125;AN=8;AO=12;CIGAR=1X;DP=264;DPB=264;DPRA=1.125;EPP=29.068;EPPR=548.05;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=480;QR=9949;RO=251;RPL=0;RPP=29.068;RPPR=548.05;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=251;SRP=548.05;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:72:60,12:60:2412:12:480:-21.876,0,-195.553 0/0:101:100,0:100:3948:0:0:0,-30.103,-355.004 0/0:68:68,0:68:2664:0:0:0,-20.47,-239.893 0/0:23:23,0:23:925:0:0:0,-6.92369,-83.5543 dDocent_Contig_1570 10 . G A 1351.41 . AB=0.431193;ABP=7.4927;AC=2;AF=0.25;AN=8;AO=49;CIGAR=1X;DP=168;DPB=168;DPRA=2;EPP=109.412;EPPR=261.416;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=0.798319;PAO=0;PQA=0;PQR=0;PRO=0;QA=1964;QR=4623;RO=119;RPL=0;RPP=109.412;RPPR=261.416;RPR=49;RUN=1;SAF=49;SAP=109.412;SAR=0;SRF=119;SRP=261.416;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:77:33,44:33:1304:44:1766:-135.976,0,-94.4406 0/0:24:24,0:24:950:0:0:0,-7.22472,-85.8018 0/1:32:29,3:29:1110:3:119:-1.46154,0,-90.5446 0/0:35:33,2:33:1259:2:79:0,-3.03881,-106.068 dDocent_Contig_1571 8 . C G 197.141 . AB=0.127517;ABP=182.572;AC=1;AF=0.125;AN=8;AO=30;CIGAR=1X;DP=369;DPB=369;DPRA=2.46212;EPP=68.1545;EPPR=739.139;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1151;QR=13084;RO=339;RPL=0;RPP=68.1545;RPPR=739.139;RPR=30;RUN=1;SAF=30;SAP=68.1545;SAR=0;SRF=339;SRP=739.139;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:149:130,19:130:5054:19:724:-20.6349,0,-410.002 0/0:118:111,7:111:4267:7:271:0,-10.7652,-359.341 0/0:58:54,4:54:2081:4:156:0,-3.04245,-173.103 0/0:44:44,0:44:1682:0:0:0,-13.2453,-151.638 dDocent_Contig_1572 121 . C T 77.1279 . AB=0.192308;ABP=24.391;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=104;DPB=104;DPRA=1;EPP=13.8677;EPPR=217.986;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.888889;PAO=0;PQA=0;PQR=0;PRO=0;QA=179;QR=3410;RO=99;RPL=0;RPP=13.8677;RPPR=217.986;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=217.986;SRR=99;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:21,5:21:725:5:179:-8.63361,0,-57.7442 0/0:31:31,0:31:1066:0:0:0,-9.33193,-96.249 0/0:34:34,0:34:1176:0:0:0,-10.235,-106.145 0/0:13:13,0:13:443:0:0:0,-3.91339,-40.1968 dDocent_Contig_1573 37 . T C 6624.76 . AB=0.734007;ABP=144.273;AC=4;AF=0.5;AN=8;AO=218;CIGAR=1X;DP=297;DPB=297;DPRA=0;EPP=476.391;EPPR=174.557;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=8405;QR=2962;RO=79;RPL=0;RPP=476.391;RPPR=174.557;RPR=218;RUN=1;SAF=218;SAP=476.391;SAR=0;SRF=79;SRP=174.557;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:115:40,75:40:1471:75:2890:-225.642,0,-98.0378 0/1:100:9,91:9:353:91:3516:-286.448,0,-2.02844 0/1:33:14,19:14:528:19:728:-55.9143,0,-37.9199 0/1:49:16,33:16:610:33:1271:-99.9287,0,-40.4853 dDocent_Contig_1574 1 . N G 74.0655 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=4.89285;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=78;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:78:-7.4033,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_1575 59 . C G 1087.52 . AB=0.578947;ABP=7.12467;AC=1;AF=0.125;AN=8;AO=46;CIGAR=1X;DP=228;DPB=228;DPRA=0.83871;EPP=102.898;EPPR=398.218;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1541;QR=6599;RO=182;RPL=46;RPP=102.898;RPPR=398.218;RPR=0;RUN=1;SAF=46;SAP=102.898;SAR=0;SRF=182;SRP=398.218;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:33:33,0:33:1213:0:0:0,-9.93399,-109.463 0/1:76:32,44:32:1124:44:1473:-109.974,0,-78.5744 0/0:91:91,0:91:3330:0:0:0,-27.3937,-299.874 0/0:28:26,2:26:932:2:68:0,-1.97113,-77.7315 dDocent_Contig_1576 14 . G A 95.9044 . AB=0.144737;ABP=86.3263;AC=2;AF=0.25;AN=8;AO=14;CIGAR=1X;DP=144;DPB=144;DPRA=2.4902;EPP=33.4109;EPPR=285.302;GTI=0;LEN=1;MEANALT=1;MQM=39.3571;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=530;QR=5195;RO=130;RPL=0;RPP=33.4109;RPPR=285.302;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=130;SRP=285.302;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:51:48,3:48:1917:3:117:0,-5.17957,-162.56 0/1:36:32,4:32:1276:4:162:-2.93637,0,-104.267 0/1:40:33,7:33:1327:7:251:-9.09359,0,-107.653 0/0:17:17,0:17:675:0:0:0,-5.11751,-61.0771 dDocent_Contig_1577 7 . T C 344.067 . AB=0.110132;ABP=602.394;AC=2;AF=0.25;AN=8;AO=74;CIGAR=1X;DP=882;DPB=882;DPRA=0;EPP=163.699;EPPR=1755.39;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=59.8649;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.995043;PAO=0;PQA=0;PQR=0;PRO=0;QA=2836;QR=30844;RO=807;RPL=0;RPP=163.699;RPPR=1755.39;RPR=74;RUN=1;SAF=74;SAP=163.699;SAR=0;SRF=807;SRP=1755.39;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:259:237,21:237:9072:21:798:0,-5.79272,-740.108 0/1:254:229,25:229:8746:25:960:-10.2522,0,-710.428 0/1:200:175,25:175:6702:25:961:-26.5982,0,-542.858 0/0:169:166,3:166:6324:3:117:0,-39.9637,-558.174 dDocent_Contig_1578 43 . T A 47678.6 . AB=0.912176;ABP=742.303;AC=7;AF=0.875;AN=8;AO=1407;CIGAR=1X;DP=1483;DPB=1483;DPRA=0;EPP=3058.27;EPPR=165.871;GTI=0;LEN=1;MEANALT=1.25;MQM=59.9268;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=55954;QR=2976;RO=75;RPL=0;RPP=3058.27;RPPR=165.871;RPR=1407;RUN=1;SAF=1407;SAP=3058.27;SAR=0;SRF=75;SRP=165.871;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:501:44,457:44:1756:457:18184:-1483.03,0,-7.43716 1/1:404:4,400:4:164:400:15932:-1417.49,-106.466,0 1/1:290:11,279:11:440:279:11048:-953.646,-47.3449,0 1/1:288:16,271:16:616:271:10790:-914.62,-31.0346,0 dDocent_Contig_1580 31 . T A 3599.74 . AB=0.212531;ABP=587.291;AC=4;AF=0.5;AN=8;AO=173;CIGAR=1X;DP=814;DPB=814;DPRA=0;EPP=378.675;EPPR=1394.92;GTI=0;LEN=1;MEANALT=1;MQM=59.5607;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.988439;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6809;QR=25351;RO=641;RPL=0;RPP=378.675;RPPR=1394.92;RPR=173;RUN=1;SAF=173;SAP=378.675;SAR=0;SRF=641;SRP=1394.92;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:278:193,85:193:7661:85:3325:-212.406,0,-605.422 0/1:242:195,47:195:7739:47:1847:-93.5965,0,-623.288 0/1:188:165,23:165:6510:23:914:-25.9737,0,-529.055 0/1:106:88,18:88:3441:18:723:-33.4873,0,-277.829 dDocent_Contig_1581 107 . N C 96.1159 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.586;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=103;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:103:-9.60997,-0.90309,0 dDocent_Contig_1582 46 . T C 1264.38 . AB=0.469388;ABP=3.80798;AC=4;AF=0.5;AN=8;AO=46;CIGAR=1X;DP=98;DPB=98;DPRA=0;EPP=102.898;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1778;QR=2026;RO=52;RPL=0;RPP=102.898;RPPR=115.927;RPR=46;RUN=1;SAF=46;SAP=102.898;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:14,8:14:538:8:321:-22.6356,0,-42.1316 0/1:44:19,25:19:749:25:950:-72.5563,0,-54.4872 0/1:20:15,5:15:587:5:196:-11.9937,0,-47.1431 0/1:12:4,8:4:152:8:311:-24.7413,0,-10.4341 dDocent_Contig_1583 38 . G T 3080.41 . AB=0.09375;ABP=232.372;AC=0;AF=0;AN=8;AO=15;CIGAR=1X1M1X;DP=261;DPB=261;DPRA=0;EPP=35.5824;EPPR=296.159;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.977778;PAO=0;PQA=0;PQR=0;PRO=0;QA=559;QR=5315;RO=135;RPL=0;RPP=35.5824;RPPR=296.159;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=135;SRP=296.159;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:43:27,0,15:27:1080:0,15:0,568:-38.4231,-46.551,-135.528,0,-88.9831,-84.4677 0|0:97:47,9,41:47:1834:9,41:330,1595:-116.926,-104.113,-252.151,0,-123.805,-138.424 0|0:63:31,6,26:31:1232:6,26:229,1017:-74.2854,-64.8356,-164.461,0,-82.6601,-93.6143 0|0:58:30,0,28:30:1169:0,28:0,1123:-83.8966,-92.9275,-188.989,0,-96.4565,-88.0277 dDocent_Contig_1585 136 . C T 15248 . AB=0.727545;ABP=303.428;AC=4;AF=0.5;AN=8;AO=486;CIGAR=1X;DP=668;DPB=668;DPRA=0;EPP=1058.35;EPPR=398.218;GTI=0;LEN=1;MEANALT=1;MQM=59.9794;MQMR=60;NS=4;NUMALT=1;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=19242;QR=7147;RO=182;RPL=0;RPP=1058.35;RPPR=398.218;RPR=486;RUN=1;SAF=0;SAP=1058.35;SAR=486;SRF=0;SRP=398.218;SRR=182;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:171:45,126:45:1774:126:4960:-394.808,0,-108.396 0/1:211:84,127:84:3286:127:5039:-389.857,0,-232.277 0/1:137:19,118:19:764:118:4641:-376.38,0,-27.8361 0/1:149:34,115:34:1323:115:4602:-369.245,0,-74.4772 dDocent_Contig_1586 65 . G A 1480.95 . AB=0.682927;ABP=26.8435;AC=4;AF=0.5;AN=8;AO=56;CIGAR=1X;DP=82;DPB=82;DPRA=0;EPP=124.613;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1966;QR=885;RO=26;RPL=56;RPP=124.613;RPPR=59.4686;RPR=0;RUN=1;SAF=56;SAP=124.613;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:13,12:13:432:12:423:-30.8804,0,-31.6728 0/1:26:7,19:7:238:19:669:-52.7091,0,-13.9248 0/1:20:4,16:4:143:16:558:-44.5264,0,-7.20084 0/1:11:2,9:2:72:9:316:-25.4677,0,-3.52539 dDocent_Contig_1587 135 . A G 1990.65 . AB=0.391304;ABP=21.8927;AC=4;AF=0.5;AN=8;AO=72;CIGAR=1X;DP=184;DPB=184;DPRA=0;EPP=159.356;EPPR=246.215;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2874;QR=4420;RO=112;RPL=0;RPP=159.356;RPPR=246.215;RPR=72;RUN=1;SAF=0;SAP=159.356;SAR=72;SRF=0;SRP=246.215;SRR=112;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:51:12,39:12:474:39:1567:-125.914,0,-27.6566 0/1:25:18,7:18:714:7:273:-17.4052,0,-57.0606 0/1:61:43,18:43:1713:18:723:-47.0321,0,-136.031 0/1:47:39,8:39:1519:8:311:-14.2033,0,-122.803 dDocent_Contig_1588 98 . N A 6918.3 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=232;CIGAR=1X;DP=232;DPB=232;DPRA=0;EPP=506.792;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=7668;QR=0;RO=0;RPL=232;RPP=506.792;RPPR=0;RPR=0;RUN=1;SAF=232;SAP=506.792;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:95:0,95:0:0:95:3075:-276.988,-28.5979,0 1/1:53:0,53:0:0:53:1776:-160.123,-15.9546,0 1/1:40:0,40:0:0:40:1329:-119.903,-12.0412,0 1/1:44:0,44:0:0:44:1488:-134.214,-13.2453,0 dDocent_Contig_1589 89 . T C 4506.03 . AB=0.785388;ABP=157.938;AC=4;AF=0.5;AN=8;AO=172;CIGAR=1X;DP=219;DPB=219;DPRA=0;EPP=376.504;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=0.959302;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5787;QR=1563;RO=47;RPL=172;RPP=376.504;RPPR=105.07;RPR=0;RUN=1;SAF=172;SAP=376.504;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:93:10,83:10:336:83:2809:-225.061,0,-2.57059 0/1:55:19,36:19:624:36:1213:-92.9128,0,-39.9158 0/1:47:15,32:15:502:32:1075:-82.9031,0,-31.3519 0/1:24:3,21:3:101:21:690:-55.184,0,-2.19905 dDocent_Contig_1590 115 . G T 200.253 . AB=0.210526;ABP=44.4969;AC=1;AF=0.125;AN=8;AO=12;CIGAR=1X;DP=140;DPB=140;DPRA=2.06024;EPP=29.068;EPPR=280.959;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=423;QR=4496;RO=128;RPL=0;RPP=29.068;RPPR=280.959;RPR=12;RUN=1;SAF=0;SAP=29.068;SAR=12;SRF=0;SRP=280.959;SRR=128;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:31:31,0:31:1094:0:0:0,-9.33193,-98.7685 0/0:11:11,0:11:390:0:0:0,-3.31133,-35.439 0/1:57:45,12:45:1571:12:423:-21.2472,0,-124.522 0/0:41:41,0:41:1441:0:0:0,-12.3422,-129.987 dDocent_Contig_1591 31 . T C 1570.66 . AB=0.293333;ABP=86.4817;AC=4;AF=0.5;AN=8;AO=66;CIGAR=1X;DP=225;DPB=225;DPRA=0;EPP=146.327;EPPR=348.274;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=0.969697;PAIREDR=0.974843;PAO=0;PQA=0;PQR=0;PRO=0;QA=2544;QR=6231;RO=159;RPL=0;RPP=146.327;RPPR=348.274;RPR=66;RUN=1;SAF=66;SAP=146.327;SAR=0;SRF=159;SRP=348.274;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:69:50,19:50:1974:19:733:-45.5246,0,-157.099 0/1:73:61,12:61:2391:12:453:-19.1365,0,-193.373 0/1:57:33,24:33:1292:24:930:-66.8484,0,-99.3958 0/1:26:15,11:15:574:11:428:-31.0458,0,-44.1684 dDocent_Contig_1592 186 . T G 192.775 . AB=0.2;ABP=42.0968;AC=2;AF=0.25;AN=8;AO=10;CIGAR=1X;DP=129;DPB=129;DPRA=0.632911;EPP=24.725;EPPR=261.416;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=398;QR=4776;RO=119;RPL=10;RPP=24.725;RPPR=261.416;RPR=0;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=261.416;SRR=119;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:40:40,0:40:1584:0:0:0,-12.0412,-142.791 0/0:39:39,0:39:1573:0:0:0,-11.7402,-141.801 0/1:22:20,2:20:816:2:81:-1.06307,0,-67.131 0/1:28:20,8:20:803:8:317:-20.4632,0,-64.1597 dDocent_Contig_1593 209 . N G 72.1792 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=4.89285;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=76;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:76:-7.21467,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_1594 98 . N C 66.5064 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=2X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=4.89285;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=70;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. 1|1:2:0,2:0:0:2:70:-6.6474,-0.60206,0 .:.:.:.:.:.:.:. dDocent_Contig_1595 179 . T C 5930.19 . AB=0.779528;ABP=89.2024;AC=5;AF=0.625;AN=8;AO=179;CIGAR=1X;DP=208;DPB=208;DPRA=0;EPP=391.704;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7094;QR=1153;RO=29;RPL=179;RPP=391.704;RPPR=65.983;RPR=0;RUN=1;SAF=0;SAP=391.704;SAR=179;SRF=0;SRP=65.983;SRR=29;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:81:1,80:1:41:80:3177:-281.905,-20.2889,0 0/1:65:13,52:13:525:52:2030:-163.316,0,-28.0285 0/1:36:6,30:6:231:30:1197:-97.1622,0,-10.3156 0/1:26:9,17:9:356:17:690:-54.6023,0,-24.5739 dDocent_Contig_1596 7 . T C 1590.55 . AB=0.2;ABP=499.409;AC=4;AF=0.5;AN=8;AO=127;CIGAR=1X;DP=635;DPB=635;DPRA=0;EPP=278.787;EPPR=1106.12;GTI=0;LEN=1;MEANALT=1;MQM=42.4882;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.535433;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4892;QR=19424;RO=508;RPL=0;RPP=278.787;RPPR=1106.12;RPR=127;RUN=1;SAF=127;SAP=278.787;SAR=0;SRF=508;SRP=1106.12;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:201:149,52:149:5687:52:1988:-87.0443,0,-451.292 0/1:254:214,40:214:8164:40:1544:-38.5685,0,-658.095 0/1:104:78,26:78:2993:26:1011:-32.2677,0,-238.23 0/1:76:67,9:67:2580:9:349:-6.66388,0,-209.515 dDocent_Contig_1597 20 . G A 5047.69 . AB=0.649402;ABP=51.6738;AC=4;AF=0.5;AN=8;AO=163;CIGAR=1X;DP=251;DPB=251;DPRA=0;EPP=356.96;EPPR=194.1;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.993865;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6499;QR=3476;RO=88;RPL=0;RPP=356.96;RPPR=194.1;RPR=163;RUN=1;SAF=163;SAP=356.96;SAR=0;SRF=88;SRP=194.1;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:73:16,57:16:644:57:2277:-183.114,0,-36.3179 0/1:77:46,31:46:1815:31:1216:-86.5322,0,-140.387 0/1:63:20,43:20:786:43:1709:-135.06,0,-52.0938 0/1:38:6,32:6:231:32:1297:-105.552,0,-9.71178 dDocent_Contig_1598 13 . A T 269.793 . AB=0.357143;ABP=7.97367;AC=1;AF=0.125;AN=8;AO=17;CIGAR=1X;DP=150;DPB=150;DPRA=0;EPP=39.9253;EPPR=274.706;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.969925;PAO=0;PQA=0;PQR=0;PRO=0;QA=685;QR=5272;RO=133;RPL=0;RPP=39.9253;RPPR=291.816;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=131;SRP=274.706;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:42:39,3:39:1549:3:122:0,-1.27077,-128.284 0/0:30:29,1:29:1145:1:41:0,-4.93633,-99.2361 0/1:28:18,10:18:721:10:403:-28.201,0,-56.7869 0/0:50:47,3:47:1857:3:119:0,-3.957,-156.25 dDocent_Contig_1600 9 . A G 6274.93 . AB=0.516667;ABP=3.73412;AC=7;AF=0.875;AN=8;AO=155;CIGAR=1X3M;DP=300;DPB=300;DPRA=0;EPP=339.589;EPPR=113.755;GTI=0;LEN=1;MEANALT=2.75;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5948;QR=2003;RO=51;RPL=0;RPP=339.589;RPPR=113.755;RPR=155;RUN=1;SAF=155;SAP=339.589;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:91:14,34,42:14:549:34,42:1333,1624:-193.658,-88.2469,-123.162,-64.4782,0,-96.9838 1|1:101:13,24,62:13:504:24,62:938,2365:-225.833,-152.626,-186.807,-35.7238,0,-58.4658 0|1:64:23,13,28:23:910:13,28:508,1068:-80.6855,-45.8451,-116.831,0,-33.1365,-66.4671 1|1:44:1,20,23:1:40:20,23:770,891:-132.806,-69.8912,-67.1662,-59.9074,0,-56.2795 dDocent_Contig_1601 1 . N G 63.0669 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=39;MQMR=0;NS=1;NUMALT=1;ODDS=4.89285;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=69;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:69:-6.30345,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_1602 30 . G A 714.581 . AB=0.16;ABP=279.135;AC=4;AF=0.5;AN=8;AO=44;CIGAR=1X;DP=275;DPB=275;DPRA=0;EPP=98.5551;EPPR=487.399;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.952381;PAO=0;PQA=0;PQR=0;PRO=0;QA=1759;QR=9153;RO=231;RPL=0;RPP=98.5551;RPPR=470.478;RPR=44;RUN=1;SAF=44;SAP=98.5551;SAR=0;SRF=229;SRP=487.399;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:119:101,18:101:4016:18:715:-28.8557,0,-325.611 0/1:66:59,7:59:2355:7:275:-5.24945,0,-192.238 0/1:56:46,10:46:1822:10:407:-20.1329,0,-147.326 0/1:34:25,9:25:960:9:362:-22.7095,0,-76.4527 dDocent_Contig_1603 24 . G C 241.76 . AB=0.191176;ABP=59.3408;AC=2;AF=0.25;AN=8;AO=16;CIGAR=1X;DP=135;DPB=135;DPRA=3.75758;EPP=37.7539;EPPR=261.416;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=638;QR=4642;RO=119;RPL=0;RPP=37.7539;RPPR=261.416;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=119;SRP=261.416;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:43:37,6:37:1445:6:244:-9.39453,0,-117.35 0/1:25:18,7:18:716:7:271:-17.2251,0,-57.2381 0/0:56:53,3:53:2086:3:123:0,-5.39289,-176.45 0/0:11:11,0:11:395:0:0:0,-3.31133,-35.8703 dDocent_Contig_1604 77 . G A 1251.42 . AB=0.472222;ABP=3.73412;AC=4;AF=0.5;AN=8;AO=51;CIGAR=1X3M1X;DP=108;DPB=108;DPRA=0;EPP=113.755;EPPR=126.784;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.964912;PAO=0;PQA=0;PQR=0;PRO=0;QA=1798;QR=2020;RO=57;RPL=51;RPP=113.755;RPPR=126.784;RPR=0;RUN=1;SAF=51;SAP=113.755;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:30:14,16:14:495:16:580:-43.5046,0,-35.8508 0|1:26:16,10:16:568:10:332:-22.3704,0,-43.6239 0|1:29:13,16:13:470:16:570:-42.9014,0,-33.9102 0|1:23:14,9:14:487:9:316:-21.8546,0,-37.2341 dDocent_Contig_1605 8 . C T 5793.9 . AB=0.0289456;ABP=2799.57;AC=0;AF=0;AN=8;AO=42;CIGAR=2X;DP=1451;DPB=1451;DPRA=0;EPP=94.2121;EPPR=2022.48;GTI=0;LEN=1;MEANALT=4.5;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=0.941935;PAO=0;PQA=0;PQR=0;PRO=0;QA=1608;QR=35352;RO=930;RPL=0;RPP=94.2121;RPPR=2022.48;RPR=42;RUN=1;SAF=42;SAP=94.2121;SAR=0;SRF=930;SRP=2022.48;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:472:261,10,53,143:261:9936:10,53,143:385,2005,4647:-296.359,-343.314,-1155.29,-210.565,-993.949,-1009.61,0,-783.354,-650.615,-771.918 0|0:529:357,8,36,118:357:13554:8,36,118:311,1384,3744:-193.742,-275.65,-1384.71,-187.576,-1273.49,-1288.21,0,-1085.87,-997.81,-1075.91 0|0:300:203,13,26,50:203:7737:13,26,50:494,978,1611:-68.7291,-89.3218,-720.103,-49.6998,-643.887,-676.572,0,-594.159,-554.543,-619.619 0|0:150:109,11,19,6:109:4125:11,19,6:418,718,178:-26.049,-24.5753,-359.434,0,-303.896,-332.457,-44.666,-348.542,-323.973,-381.017 dDocent_Contig_1606 9 . G A 678.008 . AB=0.210843;ABP=123.566;AC=3;AF=0.375;AN=8;AO=37;CIGAR=1X;DP=207;DPB=207;DPRA=0;EPP=83.3548;EPPR=372.161;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1415;QR=6527;RO=170;RPL=0;RPP=83.3548;RPPR=372.161;RPR=37;RUN=1;SAF=37;SAP=83.3548;SAR=0;SRF=170;SRP=372.161;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:84:64,20:64:2464:20:771:-44.4319,0,-196.677 0/1:39:31,8:31:1197:8:297:-15.3418,0,-96.2863 0/0:41:39,2:39:1496:2:74:0,-5.31635,-127.888 0/1:43:36,7:36:1370:7:273:-11.9937,0,-110.638 dDocent_Contig_1607 67 . G T 90.1352 . AB=0.173913;ABP=45.4956;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X;DP=195;DPB=195;DPRA=1.03125;EPP=22.5536;EPPR=406.904;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=299;QR=6344;RO=186;RPL=9;RPP=22.5536;RPPR=406.904;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=186;SRP=406.904;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:56:56,0:56:1935:0:0:0,-16.8577,-174.432 0/0:53:52,1:52:1757:1:35:0,-12.456,-154.916 0/1:46:38,8:38:1293:8:264:-10.2354,0,-102.824 0/0:40:40,0:40:1359:0:0:0,-12.0412,-122.608 dDocent_Contig_1608 47 . A G 135.776 . AB=0.115702;ABP=158.226;AC=1;AF=0.125;AN=8;AO=14;CIGAR=1X;DP=412;DPB=412;DPRA=1.24742;EPP=33.4109;EPPR=867.256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.876884;PAO=0;PQA=0;PQR=0;PRO=0;QA=562;QR=15540;RO=398;RPL=0;RPP=33.4109;RPPR=867.256;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=398;SRP=867.256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:121:107,14:107:4157:14:562:-14.4984,0,-337.686 0/0:104:104,0:104:4024:0:0:0,-31.3071,-362.169 0/0:89:89,0:89:3468:0:0:0,-26.7917,-312.177 0/0:98:98,0:98:3891:0:0:0,-29.5009,-350.198 dDocent_Contig_1609 8 . C T 42.2404 . AB=0.0967742;ABP=178.129;AC=1;AF=0.125;AN=8;AO=12;CIGAR=1X;DP=371;DPB=371;DPRA=1.50607;EPP=29.068;EPPR=782.569;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.994429;PAO=0;PQA=0;PQR=0;PRO=0;QA=468;QR=13823;RO=359;RPL=0;RPP=29.068;RPPR=782.569;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=359;SRP=782.569;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:124:112,12:112:4305:12:468:-5.14483,0,-350.183 0/0:119:119,0:119:4582:0:0:0,-35.8226,-412.423 0/0:82:82,0:82:3170:0:0:0,-24.6845,-285.447 0/0:46:46,0:46:1766:0:0:0,-13.8474,-159.192 dDocent_Contig_1610 41 . G T 649.292 . AB=0.383333;ABP=10.1038;AC=1;AF=0.125;AN=8;AO=23;CIGAR=1X;DP=249;DPB=249;DPRA=0.952381;EPP=52.9542;EPPR=493.763;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.995575;PAO=0;PQA=0;PQR=0;PRO=0;QA=929;QR=9071;RO=226;RPL=0;RPP=52.9542;RPPR=493.763;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=226;SRP=493.763;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:60:37,23:37:1491:23:929:-65.85,0,-116.372 0/0:43:43,0:43:1735:0:0:0,-12.9443,-156.364 0/0:84:84,0:84:3384:0:0:0,-25.2865,-304.599 0/0:62:62,0:62:2461:0:0:0,-18.6639,-221.635 dDocent_Contig_1611 26 . A T 215.312 . AB=0.176471;ABP=64.8334;AC=1;AF=0.125;AN=8;AO=12;CIGAR=1X;DP=136;DPB=136;DPRA=3;EPP=29.068;EPPR=272.273;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=473;QR=4796;RO=124;RPL=0;RPP=29.068;RPPR=272.273;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=124;SRP=272.273;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:68:56,12:56:2129:12:473:-22.452,0,-171.338 0/0:45:45,0:45:1776:0:0:0,-13.5463,-160.069 0/0:13:13,0:13:508:0:0:0,-3.91339,-46.0611 0/0:10:10,0:10:383:0:0:0,-3.0103,-34.8229 dDocent_Contig_1612 13 . G A 8637.56 . AB=0.619256;ABP=59.4638;AC=4;AF=0.5;AN=8;AO=283;CIGAR=1X2M1X2M1X;DP=457;DPB=457;DPRA=0;EPP=617.537;EPPR=367.818;GTI=0;LEN=1;MEANALT=2.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.970238;PAO=0;PQA=0;PQR=0;PRO=0;QA=11174;QR=6580;RO=168;RPL=0;RPP=617.537;RPPR=367.818;RPR=283;RUN=1;SAF=283;SAP=617.537;SAR=0;SRF=168;SRP=367.818;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:126:54,70:54:2110:70:2763:-211.084,0,-152.388 0|1:137:39,95:39:1522:95:3734:-295.377,0,-96.5015 0|1:113:48,64:48:1878:64:2526:-193.386,0,-135.133 0|1:81:27,54:27:1070:54:2151:-169.397,0,-72.2145 dDocent_Contig_1613 14 . T C 851.567 . AB=0.0943396;ABP=78.766;AC=0;AF=0;AN=8;AO=5;CIGAR=1X1M1X;DP=145;DPB=145;DPRA=3.53333;EPP=13.8677;EPPR=217.986;GTI=0;LEN=1;MEANALT=2;MQM=31;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0.989899;PAO=0;PQA=0;PQR=0;PRO=0;QA=189;QR=3832;RO=99;RPL=0;RPP=13.8677;RPPR=217.986;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=99;SRP=217.986;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:41:20,0,20:20:760:0,20:0,707:-50.5559,-56.5765,-118.915,0,-62.6296,-56.609 0|0:53:39,5,9:39:1510:5,9:189,339:-15.7181,-15.5383,-138.071,0,-112.168,-121.394 0|0:36:26,0,10:26:1015:0,10:0,382:-22.8482,-30.675,-114.125,0,-83.8252,-80.8149 0|0:15:14,0,1:14:547:0,1:0,41:0,-4.21442,-49.1697,-0.466943,-45.8262,-45.5251 dDocent_Contig_1614 8 . C A 344.442 . AB=0.0952381;ABP=92.6611;AC=0;AF=0;AN=8;AO=6;CIGAR=2X2M1X;DP=227;DPB=227;DPRA=1.3125;EPP=16.0391;EPPR=383.018;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=2.77556e-17;PAIRED=1;PAIREDR=0.52;PAO=0;PQA=0;PQR=0;PRO=0;QA=240;QR=6835;RO=175;RPL=0;RPP=16.0391;RPPR=383.018;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=175;SRP=383.018;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:76:64,9,0,2:64:2524:9,0,2:333,0,77:-7.90355,0,-204.961,-27.1695,-207.67,-234.854,-20.8451,-201.348,-228.532,-227.93 0|0:40:32,0,0,8:32:1240:0,0,8:0,0,304:-15.5008,-25.1338,-127.006,-25.1338,-127.006,-127.006,0,-102.252,-102.252,-99.8436 0|0:63:39,9,6,8:39:1532:9,6,8:352,240,303:-15.0049,0,-123.301,-6.96698,-106.239,-131.182,-1.90308,-101.172,-108.148,-125.512 0|0:48:40,3,0,3:40:1539:3,0,3:120,0,117:0,-2.15268,-127.591,-12.0412,-128.494,-138.38,-2.42624,-118.876,-128.762,-127.859 dDocent_Contig_1615 24 . A C 5179.52 . AB=0.0652174;ABP=305.128;AC=0;AF=0;AN=8;AO=12;CIGAR=1X3M1D1M;DP=248;DPB=217.167;DPRA=3.28571;EPP=29.068;EPPR=139.813;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=459;QR=2464;RO=63;RPL=0;RPP=29.068;RPPR=139.813;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=63;SRP=139.813;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:87:27,9,51:27:1061:9,51:343,1888:-146.269,-126.261,-210.821,0,-59.1392,-71.9174 0|0:97:14,3,80:14:549:3,80:116,3091:-249.621,-244.307,-288.55,0,-35.623,-21.0677 0|0:28:2,0,26:2:76:0,26:0,970:-80.374,-80.9761,-87.2095,-1.21417,-7.82678,0 0|0:36:20,0,16:20:778:0,16:0,624:-45.6555,-51.6761,-115.608,0,-64.321,-59.5045 dDocent_Contig_1617 24 . G A 5144.95 . AB=0.286897;ABP=288.989;AC=4;AF=0.5;AN=8;AO=208;CIGAR=1X;DP=725;DPB=725;DPRA=0;EPP=454.677;EPPR=1125.66;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.998066;PAO=0;PQA=0;PQR=0;PRO=0;QA=8194;QR=20731;RO=517;RPL=0;RPP=454.677;RPPR=1125.66;RPR=208;RUN=1;SAF=208;SAP=454.677;SAR=0;SRF=517;SRP=1125.66;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:228:160,68:160:6435:68:2699:-174.402,0,-510.228 0/1:207:150,57:150:5987:57:2208:-136.593,0,-476.281 0/1:160:121,39:121:4854:39:1544:-91.0261,0,-388.569 0/1:130:86,44:86:3455:44:1743:-117.962,0,-271.854 dDocent_Contig_1618 30 . G T 441.58 . AB=0.169935;ABP=147.789;AC=2;AF=0.25;AN=8;AO=29;CIGAR=1X;DP=273;DPB=273;DPRA=0;EPP=65.983;EPPR=532.85;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1145;QR=9814;RO=244;RPL=0;RPP=65.983;RPPR=532.85;RPR=29;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=244;SRP=532.85;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:98:96,2:96:3835:2:82:0,-21.7213,-337.368 0/1:94:74,20:74:2997:20:796:-43.6604,0,-241.51 0/1:59:53,6:53:2139:6:226:-2.93714,0,-174.92 0/0:22:21,1:21:843:1:41:0,-2.52809,-72.0873 dDocent_Contig_1619 160 . A G 296.097 . AB=0.433333;ABP=4.16842;AC=1;AF=0.125;AN=8;AO=13;CIGAR=1X;DP=117;DPB=117;DPRA=1.03448;EPP=3.17734;EPPR=175.451;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=437;QR=2847;RO=102;RPL=7;RPP=3.17734;RPPR=175.451;RPR=6;RUN=1;SAF=0;SAP=31.2394;SAR=13;SRF=0;SRP=224.5;SRR=102;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:56:55,0:55:1556:0:0:0,-16.5566,-140.236 0/1:30:16,13:16:443:13:437:-30.8316,0,-31.3295 0/0:15:15,0:15:409:0:0:0,-4.51545,-37.0772 0/0:16:16,0:16:439:0:0:0,-4.81648,-39.7794 dDocent_Contig_1620 97 . G C 1131.6 . AB=0.421053;ABP=9.18185;AC=1;AF=0.125;AN=8;AO=54;CIGAR=1X;DP=207;DPB=207;DPRA=9.52381;EPP=120.27;EPPR=335.246;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1856;QR=5317;RO=153;RPL=54;RPP=120.27;RPPR=335.246;RPR=0;RUN=1;SAF=54;SAP=120.27;SAR=0;SRF=153;SRP=335.246;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:7:7,0:7:227:0:0:0,-2.10721,-20.7473 0/1:114:66,48:66:2294:48:1649:-114.382,0,-172.406 0/0:42:39,3:39:1370:3:103:0,-3.03324,-113.99 0/0:44:41,3:41:1426:3:104:0,-3.54223,-118.931 dDocent_Contig_1621 109 . T A 177.235 . AB=0.294118;ABP=21.7871;AC=3;AF=0.375;AN=8;AO=15;CIGAR=1X;DP=58;DPB=58;DPRA=2.42857;EPP=35.5824;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=402;QR=1392;RO=43;RPL=0;RPP=35.5824;RPPR=96.3836;RPR=15;RUN=1;SAF=0;SAP=35.5824;SAR=15;SRF=0;SRP=96.3836;SRR=43;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:18,10:18:608:10:249:-14.2269,0,-46.611 0/1:15:12,3:12:366:3:88:-3.6966,0,-28.7181 0/1:8:6,2:6:199:2:65:-3.76521,0,-15.828 0/0:7:7,0:7:219:0:0:0,-2.10721,-20.0176 dDocent_Contig_1622 8 . T C 2416.09 . AB=0.0833333;ABP=57.2971;AC=4;AF=0.5;AN=8;AO=3;CIGAR=1X2M1X3M;DP=154;DPB=154;DPRA=0;EPP=9.52472;EPPR=137.642;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=118;QR=2412;RO=62;RPL=0;RPP=9.52472;RPPR=137.642;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:30:7,17,0,6:7:276:17,0,6:661,0,244:-52.2,0,-17.5845,-54.3072,-22.702,-77.016,-34.1761,-2.56985,-56.8863,-55.0801 0|1:34:19,15,0,0:19:737:15,0,0:577,0,0:-42.0348,0,-56.4227,-47.7544,-60.9382,-108.307,-47.7544,-60.9382,-108.307,-108.307 0|1:36:9,24,3,0:9:351:24,3,0:938,118,0:-74.4068,0,-21.6247,-67.4089,-19.1417,-95.3575,-77.116,-28.8494,-96.2606,-105.968 0|1:54:27,27,0,0:27:1048:27,0,0:1049,0,0:-78.457,0,-78.3679,-86.5848,-86.4957,-172.692,-86.5848,-86.4957,-172.692,-172.692 dDocent_Contig_1623 23 . T C 4075.97 . AB=0.64878;ABP=42.4252;AC=4;AF=0.5;AN=8;AO=133;CIGAR=1X;DP=205;DPB=205;DPRA=0;EPP=291.816;EPPR=159.356;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.992481;PAIREDR=0.972222;PAO=0;PQA=0;PQR=0;PRO=0;QA=5264;QR=2900;RO=72;RPL=0;RPP=291.816;RPPR=159.356;RPR=133;RUN=1;SAF=133;SAP=291.816;SAR=0;SRF=72;SRP=159.356;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:63:26,37:26:1027:37:1469:-113.491,0,-73.7611 0/1:56:22,34:22:900:34:1330:-103.095,0,-64.4453 0/1:47:13,34:13:529:34:1355:-108.061,0,-33.8082 0/1:39:11,28:11:444:28:1110:-88.4398,0,-28.5756 dDocent_Contig_1624 21 . G A 631.491 . AB=0.27551;ABP=45.908;AC=2;AF=0.25;AN=8;AO=34;CIGAR=1X;DP=201;DPB=201;DPRA=0;EPP=76.8404;EPPR=365.646;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1318;QR=6621;RO=167;RPL=0;RPP=76.8404;RPPR=365.646;RPR=34;RUN=1;SAF=34;SAP=76.8404;SAR=0;SRF=167;SRP=365.646;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:47:35,12:35:1371:12:473:-28.7707,0,-109.503 0/0:82:76,6:76:3011:6:231:0,-3.53089,-249.927 0/1:51:36,15:36:1438:15:576:-36.8221,0,-114.317 0/0:21:20,1:20:801:1:38:0,-2.52436,-68.61 dDocent_Contig_1625 23 . T C 1233.68 . AB=0.241071;ABP=133.454;AC=4;AF=0.5;AN=8;AO=54;CIGAR=1M1X3M;DP=224;DPB=221.2;DPRA=0;EPP=120.27;EPPR=317.874;GTI=0;LEN=1;MEANALT=3.75;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2086;QR=5651;RO=145;RPL=0;RPP=120.27;RPPR=317.874;RPR=54;RUN=1;SAF=54;SAP=120.27;SAR=0;SRF=145;SRP=317.874;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:77:44,3,3,26:44:1716:3,3,26:115,120,999:-68.7417,-72.551,-212.696,-72.1006,-203.713,-212.247,0,-131.606,-131.157,-133.216 0|1:73:49,5,3,13:49:1932:5,3,13:186,120,513:-27.4629,-27.0003,-184.452,-32.3275,-176.072,-190.386,0,-143.748,-149.079,-155.05 0|1:54:45,0,3,5:45:1730:0,3,5:0,118,172:-0.388658,-13.935,-155.963,-4.2167,-146.257,-145.354,0,-142.002,-132.296,-140.497 0|1:20:7,1,0,10:7:273:1,0,10:40,0,402:-31.1225,-29.9323,-52.0792,-33.2297,-52.3802,-55.6765,0,-19.224,-22.5242,-19.5139 dDocent_Contig_1626 49 . G T 63.8852 . AB=0.133333;ABP=55.5599;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=173;DPB=173;DPRA=1.05469;EPP=16.0391;EPPR=357.012;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=231;QR=6622;RO=167;RPL=0;RPP=16.0391;RPPR=357.012;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=167;SRP=365.646;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:77:77,0:77:3065:0:0:0,-23.1793,-275.922 0/1:45:39,6:39:1555:6:231:-7.61037,0,-126.642 0/0:27:27,0:27:1059:0:0:0,-8.12781,-95.5972 0/0:24:24,0:24:943:0:0:0,-7.22472,-85.1726 dDocent_Contig_1627 145 . T A 50.3493 . AB=0.211765;ABP=64.348;AC=2;AF=0.25;AN=8;AO=20;CIGAR=2X;DP=151;DPB=151;DPRA=1.10476;EPP=46.4397;EPPR=287.473;GTI=0;LEN=1;MEANALT=1;MQM=20.65;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.916031;PAO=0;PQA=0;PQR=0;PRO=0;QA=799;QR=5213;RO=131;RPL=0;RPP=46.4397;RPPR=287.473;RPR=20;RUN=1;SAF=0;SAP=46.4397;SAR=20;SRF=0;SRP=287.473;SRR=131;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:35:35,0:35:1396:0:0:0,-10.536,-125.898 0|1:43:34,9:34:1364:9:356:-3.07182,0,-110.072 0|0:31:29,2:29:1154:2:79:0,-4.98117,-99.7911 0|1:42:33,9:33:1299:9:364:-4.4036,0,-104.537 dDocent_Contig_1628 17 . T G 4146.55 . AB=0.295699;ABP=205.307;AC=4;AF=0.5;AN=8;AO=165;CIGAR=1X1M2X;DP=558;DPB=558;DPRA=0;EPP=361.303;EPPR=839.027;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.981818;PAIREDR=0.997403;PAO=0;PQA=0;PQR=0;PRO=0;QA=6506;QR=15260;RO=385;RPL=0;RPP=361.303;RPPR=839.027;RPR=165;RUN=1;SAF=165;SAP=361.303;SAR=0;SRF=385;SRP=839.027;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:175:125,44:125:4956:44:1726:-104.292,0,-394.676 0|1:169:115,52:115:4551:52:2066:-135.48,0,-358.895 0|1:86:66,20:66:2622:20:794:-45.8887,0,-210.235 0|1:128:79,49:79:3131:49:1920:-134.484,0,-243.349 dDocent_Contig_1629 98 . N C 71.2991 . AB=0;ABP=0;AC=2;AF=0.5;AN=4;AO=2;CIGAR=1X;DP=3;DPB=3;DPRA=2;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=70;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 0/0:1:0,0:0:0:0:0:0,0,0 1/1:2:0,2:0:0:2:70:-6.6474,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_1630 13 . G T 2211.59 . AB=0.346154;ABP=51.1168;AC=4;AF=0.5;AN=8;AO=81;CIGAR=1X;DP=234;DPB=234;DPRA=0;EPP=178.9;EPPR=333.074;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=0.993421;PAO=0;PQA=0;PQR=0;PRO=0;QA=3285;QR=6037;RO=152;RPL=0;RPP=178.9;RPPR=333.074;RPR=81;RUN=1;SAF=81;SAP=178.9;SAR=0;SRF=152;SRP=333.074;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:69:49,20:49:1936:20:815:-52.8931,0,-153.669 0/1:50:31,19:31:1237:19:762:-53.8474,0,-96.5505 0/1:61:46,15:46:1822:15:607:-36.6044,0,-145.819 0/1:54:26,27:26:1042:27:1101:-83.304,0,-78.0066 dDocent_Contig_1631 26 . G A 335.669 . AB=0.107296;ABP=315.115;AC=2;AF=0.25;AN=8;AO=25;CIGAR=1X2M1X3M1X;DP=264;DPB=264;DPRA=2.50538;EPP=57.2971;EPPR=480.734;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=2.77556e-17;PAIRED=1;PAIREDR=0.995455;PAO=0;PQA=0;PQR=0;PRO=0;QA=964;QR=8456;RO=220;RPL=0;RPP=57.2971;RPPR=480.734;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=220;SRP=480.734;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:114:102,10,2:102:3918:10,2:394,75:-1.72609,0,-318.599,-26.2908,-315.466,-347.28 0|0:56:36,7,12:36:1382:7,12:280,466:-27.4485,-15.2158,-126.541,0,-90.3558,-109.812 0|1:63:51,8,4:51:1955:8,4:290,159:-8.29571,0,-158.027,-10.5455,-147.343,-169.807 0|0:31:31,0,0:31:1201:0,0:0,0:0,-9.33193,-108.376,-9.33193,-108.376,-108.376 dDocent_Contig_1633 13 . C T 5744.2 . AB=0.743802;ABP=127.951;AC=4;AF=0.5;AN=8;AO=180;CIGAR=1X;DP=242;DPB=242;DPRA=0;EPP=393.875;EPPR=137.642;GTI=0;LEN=1;MEANALT=1;MQM=59.9222;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7244;QR=2484;RO=62;RPL=0;RPP=393.875;RPPR=137.642;RPR=180;RUN=1;SAF=180;SAP=393.875;SAR=0;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:59:16,43:16:647:43:1720:-137.26,0,-40.8027 0/1:62:22,40:22:880:40:1622:-127.521,0,-60.8413 0/1:74:15,59:15:601:59:2377:-191.799,0,-32.1525 0/1:47:9,38:9:356:38:1525:-123.329,0,-18.2531 dDocent_Contig_1634 87 . G A 3641.57 . AB=0.52069;ABP=4.08855;AC=4;AF=0.5;AN=8;AO=151;CIGAR=1X;DP=290;DPB=290;DPRA=0;EPP=330.903;EPPR=304.845;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.761589;PAIREDR=0.719424;PAO=0;PQA=0;PQR=0;PRO=0;QA=5064;QR=4719;RO=139;RPL=151;RPP=330.903;RPPR=304.845;RPR=0;RUN=1;SAF=151;SAP=330.903;SAR=0;SRF=139;SRP=304.845;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:98:42,56:42:1423:56:1885:-140.426,0,-98.8653 0/1:49:32,17:32:1064:17:559:-35.8707,0,-81.309 0/1:79:20,59:20:681:59:1966:-153.433,0,-37.8284 0/1:64:45,19:45:1551:19:654:-39.9169,0,-120.618 dDocent_Contig_1635 8 . C A 4214.23 . AB=0.040107;ABP=690.078;AC=0;AF=0;AN=8;AO=15;CIGAR=2X1M;DP=374;DPB=374;DPRA=0;EPP=35.5824;EPPR=385.189;GTI=0;LEN=1;MEANALT=3.25;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=0.933333;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=569;QR=6713;RO=176;RPL=0;RPP=35.5824;RPPR=385.189;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=176;SRP=385.189;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:163:98,45,11,9:98:3760:45,11,9:1749,413,347:-114.216,0,-295.086,-109.886,-274.801,-415.202,-115.222,-280.138,-390.018,-421.141 0|0:82:33,43,1,4:33:1254:43,1,4:1646,39,156:-125.115,0,-89.8834,-131.843,-99.6216,-234.379,-122.225,-90.0032,-221.856,-223.858 0|0:61:20,33,2,6:20:762:33,2,6:1282,78,232:-99.3097,0,-52.5682,-98.9185,-56.0899,-160.821,-86.2742,-43.4447,-142.366,-146.972 0|0:68:25,30,1,12:25:937:30,1,12:1166,39,467:-88.2728,0,-67.7039,-92.5926,-73.5286,-169.031,-57.4172,-38.3493,-130.949,-130.543 dDocent_Contig_1636 7 . T C 81.8501 . AB=0.0961538;ABP=665.978;AC=1;AF=0.125;AN=8;AO=107;CIGAR=1X;DP=1908;DPB=1908;DPRA=0;EPP=235.358;EPPR=3911.66;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=5.55112e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4013;QR=68399;RO=1800;RPL=0;RPP=235.358;RPPR=3911.66;RPR=107;RUN=1;SAF=107;SAP=235.358;SAR=0;SRF=1800;SRP=3911.66;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:587:571,15:571:21708:15:567:0,-125.152,-1901.23 0/1:468:423,45:423:16068:45:1667:-9.40686,0,-1304.48 0/0:498:460,38:460:17454:38:1456:0,-18.5947,-1438.69 0/0:355:346,9:346:13169:9:323:0,-77.4556,-1155.25 dDocent_Contig_1637 7 . T G 94970.5 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=3392;CIGAR=1X;DP=3536;DPB=3536;DPRA=0;EPP=7368.64;EPPR=250.558;GTI=0;LEN=1;MEANALT=3;MQM=59.9985;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.998821;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=107134;QR=1571;RO=114;RPL=0;RPP=7368.64;RPPR=250.558;RPR=3392;RUN=1;SAF=3392;SAP=7368.64;SAR=0;SRF=114;SRP=250.558;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:602:16,580:16:253:580:18054:-1601.39,-156.637,0 1/1:581:20,555:20:269:555:17987:-1593.93,-148.942,0 1/1:880:28,846:28:338:846:26380:-2342.8,-232.688,0 1/1:1473:50,1411:50:711:1411:44713:-3958.33,-375.832,0 dDocent_Contig_1638 170 . G C 13149.8 . AB=0.879518;ABP=106.849;AC=7;AF=0.875;AN=8;AO=395;CIGAR=1X;DP=417;DPB=417;DPRA=0;EPP=860.742;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=15382;QR=878;RO=22;RPL=395;RPP=860.742;RPPR=50.7827;RPR=0;RUN=1;SAF=0;SAP=860.742;SAR=395;SRF=0;SRP=50.7827;SRR=22;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:124:0,124:0:0:124:4927:-443.312,-37.3277,0 1/1:128:7,121:7:271:121:4718:-399.791,-13.7778,0 1/1:82:5,77:5:204:77:2934:-245.412,-5.94043,0 0/1:83:10,73:10:403:73:2803:-227.392,0,-11.6439 dDocent_Contig_1639 198 . A G 11790.9 . AB=0.777174;ABP=248.576;AC=5;AF=0.625;AN=8;AO=384;CIGAR=1X;DP=473;DPB=473;DPRA=0;EPP=836.856;EPPR=194.1;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=14629;QR=3361;RO=88;RPL=384;RPP=836.856;RPPR=194.1;RPR=0;RUN=1;SAF=0;SAP=836.856;SAR=384;SRF=0;SRP=194.1;SRR=88;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:130:28,102:28:1089:102:3877:-309.902,0,-59.1799 1/1:105:7,98:7:254:98:3726:-312.246,-8.40134,0 0/1:130:24,105:24:894:105:4016:-322.356,0,-41.5937 0/1:108:29,79:29:1124:79:3010:-238.557,0,-68.9501 dDocent_Contig_1640 39 . A G 446.887 . AB=0.290909;ABP=23.8959;AC=1;AF=0.125;AN=8;AO=16;CIGAR=1M1X1M;DP=100;DPB=105.333;DPRA=3.4375;EPP=37.7539;EPPR=148.499;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=616;QR=2625;RO=67;RPL=0;RPP=37.7539;RPPR=148.499;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=67;SRP=148.499;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:37:33,4,0:33:1312:4,0:159,0:-3.55385,0,-107.21,-13.4878,-108.414,-121.505 0|1:25:11,5,9:11:444:5,9:193,368:-27.071,-14.5421,-49.636,0,-20.7711,-33.9047 0|0:30:15,7,7:15:556:7,7:274,248:-18.0289,0,-43.3852,-2.37049,-25.3066,-45.7345 0|0:8:8,0,0:8:313:0,0:0,0:0,-2.40824,-28.5341,-2.40824,-28.5341,-28.5341 dDocent_Contig_1642 97 . T C 44.3413 . AB=0.666667;ABP=3.73412;AC=1;AF=0.25;AN=4;AO=2;CIGAR=1X;DP=4;DPB=4;DPRA=3;EPP=3.0103;EPPR=7.35324;GTI=0;LEN=1;MEANALT=1;MQM=40;MQMR=42;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=71;QR=54;RO=2;RPL=2;RPP=7.35324;RPPR=7.35324;RPR=0;RUN=1;SAF=1;SAP=3.0103;SAR=1;SRF=2;SRP=7.35324;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 0/1:3:1,2:1:29:2:71:-5.5819,0,-1.9757 0/0:1:1,0:1:25:0:0:0,-0.30103,-2.49145 ./.:.:.:.:.:.:.:. dDocent_Contig_1644 16 . C G 597.543 . AB=0.170103;ABP=186.399;AC=1;AF=0.125;AN=8;AO=35;CIGAR=1X;DP=699;DPB=699;DPRA=1.20505;EPP=79.0118;EPPR=1442.7;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1404;QR=26587;RO=663;RPL=0;RPP=79.0118;RPPR=1442.7;RPR=35;RUN=1;SAF=35;SAP=79.0118;SAR=0;SRF=663;SRP=1442.7;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:159:159,0:159:6351:0:0:0,-47.8638,-571.315 0/1:194:160,33:160:6479:33:1322:-60.9761,0,-524.531 0/0:158:158,0:158:6313:0:0:0,-47.5627,-567.913 0/0:188:186,2:186:7444:2:82:0,-48.814,-661.79 dDocent_Contig_1645 9 . C T 97.0201 . AB=0.125;ABP=100.727;AC=1;AF=0.125;AN=8;AO=11;CIGAR=1X;DP=330;DPB=330;DPRA=0.833333;EPP=26.8965;EPPR=695.71;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.943574;PAO=0;PQA=0;PQR=0;PRO=0;QA=422;QR=12173;RO=319;RPL=0;RPP=26.8965;RPPR=695.71;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=319;SRP=695.71;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:86:86,0:86:3307:0:0:0,-25.8886,-297.769 0/1:80:70,10:70:2678:10:385:-10.9239,0,-217.116 0/0:70:69,1:69:2616:1:37:0,-17.3743,-231.933 0/0:94:94,0:94:3572:0:0:0,-28.2968,-321.603 dDocent_Contig_1646 32 . C T 211.309 . AB=0.222222;ABP=39.2015;AC=2;AF=0.25;AN=8;AO=14;CIGAR=1X;DP=145;DPB=145;DPRA=3.38462;EPP=33.4109;EPPR=287.473;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=513;QR=5230;RO=131;RPL=0;RPP=33.4109;RPPR=287.473;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=131;SRP=287.473;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:78:76,2:76:3028:2:79:0,-15.9831,-265.105 0/1:31:28,3:28:1123:3:119:-1.76308,0,-92.0172 0/1:23:14,9:14:556:9:315:-21.7532,0,-43.4556 0/0:13:13,0:13:523:0:0:0,-3.91339,-47.4169 dDocent_Contig_1647 96 . A G 118.276 . AB=0.163934;ABP=62.8504;AC=1;AF=0.125;AN=8;AO=13;CIGAR=1X;DP=220;DPB=220;DPRA=1.45528;EPP=31.2394;EPPR=452.505;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=445;QR=7019;RO=207;RPL=13;RPP=31.2394;RPPR=452.505;RPR=0;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=207;SRP=452.505;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:61:51,10:51:1719:10:342:-12.7483,0,-136.628 0/0:90:89,1:89:3023:1:34:0,-23.6938,-268.914 0/0:41:41,0:41:1380:0:0:0,-12.3422,-124.493 0/0:28:26,2:26:897:2:69:0,-1.87618,-74.4932 dDocent_Contig_1649 9 . C A 526.305 . AB=0.195946;ABP=121.854;AC=4;AF=0.5;AN=8;AO=29;CIGAR=1X3M;DP=148;DPB=148;DPRA=0;EPP=65.983;EPPR=250.558;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0.798246;PAO=0;PQA=0;PQR=0;PRO=0;QA=1107;QR=4472;RO=114;RPL=0;RPP=65.983;RPPR=250.558;RPR=29;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=114;SRP=250.558;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:44:36,0,6:36:1400:0,6:0,225:-7.58152,-18.4186,-133.473,0,-115.045,-113.239 0|1:46:31,0,15:31:1230:0,15:0,578:-38.5149,-47.8468,-149.109,0,-101.651,-97.1359 0|1:31:25,3,3:25:978:3,3:119,110:-2.28522,0,-79.5281,-0.835782,-71.4437,-80.3373 0|1:27:22,0,5:22:864:0,5:0,194:-9.70503,-16.3277,-87.3931,0,-71.4539,-69.9488 dDocent_Contig_1650 168 . G A 3067.51 . AB=0.658333;ABP=29.1404;AC=5;AF=0.625;AN=8;AO=100;CIGAR=1X;DP=142;DPB=142;DPRA=0;EPP=211.559;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3885;QR=1686;RO=42;RPL=99;RPP=211.559;RPPR=94.2121;RPR=1;RUN=1;SAF=0;SAP=220.158;SAR=100;SRF=0;SRP=94.2121;SRR=42;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:35:11,24:11:439:24:940:-74.3679,0,-29.3292 0/1:39:9,30:9:356:30:1141:-91.2234,0,-20.6593 0/1:46:21,25:21:851:25:981:-74.7404,0,-63.0523 1/1:22:1,21:1:40:21:823:-70.3858,-2.62698,0 dDocent_Contig_1652 63 . C T 8664.66 . AB=0.520325;ABP=4.33437;AC=4;AF=0.5;AN=8;AO=192;CIGAR=1X2M1X;DP=369;DPB=369;DPRA=0;EPP=419.933;EPPR=48.6112;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6475;QR=679;RO=21;RPL=192;RPP=419.933;RPPR=48.6112;RPR=0;RUN=1;SAF=192;SAP=419.933;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:94:4,58,32:4:134:58,32:1952,1088:-234.361,-77.4053,-70.7972,-147.311,0,-148.53 1|0:110:5,55,47:5:167:55,47:1863,1584:-264.392,-114.841,-111.804,-137.537,0,-136.909 1|0:102:6,50,43:6:194:50,43:1683,1486:-239.67,-105.112,-105.707,-120.725,0,-123.429 1|0:63:6,29,26:6:184:29,26:977,875:-133.533,-56.1679,-62.1816,-64.4425,0,-71.3597 dDocent_Contig_1653 11 . A G 338.053 . AB=0.156757;ABP=192.327;AC=4;AF=0.5;AN=8;AO=29;CIGAR=1X;DP=185;DPB=185;DPRA=0;EPP=65.983;EPPR=341.76;GTI=0;LEN=1;MEANALT=1;MQM=46.2759;MQMR=58.0705;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.74359;PAO=0;PQA=0;PQR=0;PRO=0;QA=1150;QR=6243;RO=156;RPL=0;RPP=65.983;RPPR=341.76;RPR=29;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=156;SRP=341.76;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:59:52,7:52:2082:7:268:-4.59602,0,-169.149 0/1:54:43,11:43:1727:11:442:-18.2297,0,-139.256 0/1:45:39,6:39:1559:6:241:-7.99711,0,-125.579 0/1:27:22,5:22:875:5:199:-8.47186,0,-70.9286 dDocent_Contig_1654 28 . T A 367.403 . AB=0.181034;ABP=105.519;AC=4;AF=0.5;AN=8;AO=21;CIGAR=1X;DP=116;DPB=116;DPRA=0;EPP=48.6112;EPPR=209.3;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=840;QR=3790;RO=95;RPL=0;RPP=48.6112;RPPR=209.3;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=95;SRP=209.3;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:26,5:26:1031:5:196:-8.6803,0,-83.7506 0/1:34:30,4:30:1195:4:164:-4.91488,0,-97.5882 0/1:32:22,10:22:877:10:398:-26.544,0,-69.6041 0/1:19:17,2:17:687:2:82:-2.06011,0,-56.4391 dDocent_Contig_1655 62 . C T 119.946 . AB=0.140625;ABP=74.8046;AC=2;AF=0.25;AN=8;AO=9;CIGAR=1X;DP=110;DPB=110;DPRA=1.3913;EPP=22.5536;EPPR=220.158;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=367;QR=3997;RO=100;RPL=9;RPP=22.5536;RPPR=220.158;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=100;SRP=220.158;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:31:31,0:31:1238:0:0:0,-9.33193,-111.688 0/1:42:35,6:35:1405:6:244:-9.59609,0,-113.963 0/1:22:19,3:19:755:3:123:-4.84213,0,-61.6488 0/0:15:15,0:15:599:0:0:0,-4.51545,-54.2454 dDocent_Contig_1656 17 . G A 9715.82 . AB=0.0644719;ABP=1204.1;AC=0;AF=0;AN=8;AO=47;CIGAR=2X;DP=729;DPB=729;DPRA=0;EPP=105.07;EPPR=754.34;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.893617;PAIREDR=0.916185;PAO=0;PQA=0;PQR=0;PRO=0;QA=1849;QR=13409;RO=346;RPL=0;RPP=105.07;RPPR=754.34;RPR=47;RUN=1;SAF=47;SAP=105.07;SAR=0;SRF=346;SRP=754.34;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:244:129,22,92:129:4971:22,92:869,3638:-260.543,-227.873,-629.394,0,-336.647,-380.456 0|0:168:76,12,79:76:2978:12,79:468,3110:-232.937,-217.352,-458.62,0,-206.418,-221.1 0|0:210:101,12,97:101:3892:12,97:471,3775:-279.79,-271.46,-587.392,0,-280.805,-290.34 0|0:107:40,1,66:40:1568:1,66:41,2622:-203.801,-212.458,-341.096,0,-125.54,-109.056 dDocent_Contig_1657 125 . C T 9696.29 . AB=0.837302;ABP=252.04;AC=6;AF=0.75;AN=8;AO=332;CIGAR=1X;DP=379;DPB=379;DPRA=0;EPP=723.939;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=11863;QR=1695;RO=47;RPL=0;RPP=723.939;RPPR=105.07;RPR=332;RUN=1;SAF=0;SAP=723.939;SAR=332;SRF=0;SRP=105.07;SRR=47;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:132:13,119:13:455:119:4261:-343.912,0,-1.54111 0/1:120:28,92:28:1018:92:3271:-258.472,0,-55.8098 1/1:69:5,64:5:185:64:2283:-188.71,-3.76106,0 1/1:58:1,57:1:37:57:2048:-180.885,-13.7619,0 dDocent_Contig_1658 55 . C A 105.969 . AB=0.193548;ABP=28.2974;AC=2;AF=0.25;AN=8;AO=7;CIGAR=1X;DP=65;DPB=65;DPRA=2.07407;EPP=18.2106;EPPR=128.956;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=280;QR=2277;RO=58;RPL=7;RPP=18.2106;RPPR=128.956;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:25:24,1:24:954:1:40:0,-3.53007,-82.1639 0/1:23:19,4:19:730:4:161:-7.95121,0,-59.0921 0/1:8:6,2:6:238:2:79:-5.08939,0,-19.3835 0/0:9:9,0:9:355:0:0:0,-2.70927,-32.3082 dDocent_Contig_1659 17 . C A 606.22 . AB=0.588235;ABP=5.30951;AC=1;AF=0.125;AN=8;AO=22;CIGAR=1X;DP=120;DPB=120;DPRA=0.719298;EPP=50.7827;EPPR=215.815;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=869;QR=3904;RO=98;RPL=0;RPP=50.7827;RPPR=215.815;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=98;SRP=215.815;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:34:14,20:14:556:20:794:-61.5428,0,-40.1477 0/0:38:38,0:38:1499:0:0:0,-11.4391,-135.144 0/0:30:29,1:29:1153:1:41:0,-4.93633,-99.9504 0/0:18:17,1:17:696:1:34:0,-2.01963,-59.5678 dDocent_Contig_1660 29 . C T 1840.72 . AB=0.164596;ABP=632.279;AC=3;AF=0.375;AN=8;AO=119;CIGAR=1X;DP=849;DPB=849;DPRA=0;EPP=261.416;EPPR=1551.46;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.983539;PAO=0;PQA=0;PQR=0;PRO=0;QA=4745;QR=29006;RO=729;RPL=0;RPP=261.416;RPPR=1586.01;RPR=119;RUN=1;SAF=119;SAP=261.416;SAR=0;SRF=725;SRP=1551.46;SRR=4;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:205:191,13:191:7619:13:510:0,-15.346,-639.098 0/1:176:131,45:131:5234:45:1793:-108.599,0,-417.932 0/1:235:213,22:213:8491:22:868:-7.68435,0,-692.981 0/1:233:194,39:194:7662:39:1574:-71.755,0,-619.061 dDocent_Contig_1661 17 . G A 404.522 . AB=0.229885;ABP=58.1457;AC=2;AF=0.25;AN=8;AO=24;CIGAR=1X;DP=192;DPB=192;DPRA=0;EPP=55.1256;EPPR=359.183;GTI=0;LEN=1;MEANALT=1;MQM=54.875;MQMR=59.9167;NS=4;NUMALT=1;ODDS=0;PAIRED=0.166667;PAIREDR=0.988095;PAO=0;PQA=0;PQR=0;PRO=0;QA=929;QR=6667;RO=168;RPL=0;RPP=55.1256;RPPR=367.818;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=167;SRP=359.183;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:45:38,7:38:1501:7:264:-8.84437,0,-121.778 0/1:42:29,13:29:1143:13:515:-34.0516,0,-90.5056 0/0:74:71,3:71:2838:3:109:0,-12.1126,-245.354 0/0:31:30,1:30:1185:1:41:0,-5.23736,-102.825 dDocent_Contig_1662 24 . A C 4000.73 . AB=0.714286;ABP=64.4319;AC=5;AF=0.625;AN=8;AO=129;CIGAR=1X;DP=173;DPB=173;DPRA=0;EPP=283.13;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4992;QR=1711;RO=44;RPL=0;RPP=283.13;RPPR=98.5551;RPR=129;RUN=1;SAF=129;SAP=283.13;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:56:18,38:18:714:38:1452:-114.09,0,-47.7317 0/1:53:9,44:9:359:44:1731:-140.068,0,-16.7187 0/1:45:17,28:17:638:28:1071:-83.1368,0,-44.2009 1/1:19:0,19:0:0:19:738:-66.7453,-5.71957,0 dDocent_Contig_1663 69 . G A 20714.4 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=657;CIGAR=1X;DP=680;DPB=680;DPRA=0;EPP=1429.67;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.998478;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=23854;QR=837;RO=23;RPL=657;RPP=1429.67;RPPR=52.9542;RPR=0;RUN=1;SAF=657;SAP=1429.67;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:194:14,180:14:508:180:6548:-543.305,-12.3418,0 1/1:185:1,184:1:37:184:6699:-599.244,-51.9927,0 1/1:197:8,189:8:292:189:6862:-590.972,-32.6723,0 1/1:104:0,104:0:0:104:3745:-337.225,-31.3071,0 dDocent_Contig_1664 51 . T C 164.579 . AB=0.107477;ABP=289.401;AC=2;AF=0.25;AN=8;AO=35;CIGAR=1X;DP=653;DPB=653;DPRA=0;EPP=79.0118;EPPR=1342.81;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1360;QR=23333;RO=617;RPL=35;RPP=79.0118;RPPR=1342.81;RPR=0;RUN=1;SAF=35;SAP=79.0118;SAR=0;SRF=617;SRP=1342.81;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:217:212,5:212:8111:5:191:0,-47.7707,-712.175 0/0:222:214,7:214:8108:7:251:0,-43.7883,-706.56 0/1:131:118,13:118:4369:13:515:-7.25701,0,-353.834 0/1:83:73,10:73:2745:10:403:-11.6446,0,-222.238 dDocent_Contig_1666 38 . T G 858.241 . AB=0.221053;ABP=131.424;AC=3;AF=0.375;AN=8;AO=46;CIGAR=1X;DP=324;DPB=324;DPRA=0;EPP=102.898;EPPR=606.68;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1782;QR=11089;RO=278;RPL=0;RPP=102.898;RPPR=606.68;RPR=46;RUN=1;SAF=46;SAP=102.898;SAR=0;SRF=278;SRP=606.68;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:104:93,11:93:3690:11:443:-8.91699,0,-300.809 0/0:134:130,4:130:5198:4:160:0,-25.5542,-452.898 0/1:56:30,26:30:1205:26:987:-72.2573,0,-91.8686 0/1:30:25,5:25:996:5:192:-8.61634,0,-80.9047 dDocent_Contig_1668 9 . C A 9515.73 . AB=0.304556;ABP=418.074;AC=4;AF=0.5;AN=8;AO=381;CIGAR=1X2M1X;DP=1251;DPB=1251;DPRA=0;EPP=830.341;EPPR=1887.85;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=5.55112e-17;PAIRED=0.866142;PAIREDR=0.031106;PAO=0;PQA=0;PQR=0;PRO=0;QA=14817;QR=33738;RO=868;RPL=0;RPP=830.341;RPPR=1887.85;RPR=381;RUN=1;SAF=381;SAP=830.341;SAR=0;SRF=868;SRP=1887.85;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:406:301,104:301:11668:104:4056:-242.764,0,-927.222 0|1:301:208,93:208:8118:93:3604:-233.843,0,-639.707 0|1:329:188,140:188:7331:140:5447:-391.029,0,-560.418 0|1:215:171,44:171:6621:44:1710:-89.4275,0,-531.023 dDocent_Contig_1669 47 . C T 446.826 . AB=0.14902;ABP=275.858;AC=1;AF=0.125;AN=8;AO=69;CIGAR=1X;DP=811;DPB=811;DPRA=0;EPP=144.282;EPPR=148.739;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.913043;PAIREDR=0.48448;PAO=0;PQA=0;PQR=0;PRO=0;QA=2511;QR=28365;RO=741;RPL=1;RPP=144.282;RPPR=151.365;RPR=68;RUN=1;SAF=69;SAP=152.842;SAR=0;SRF=740;SRP=1603.4;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:253:239,14:239:9083:14:511:0,-29.8372,-770.779 0/1:255:217,38:217:8323:38:1360:-45.9045,0,-671.984 0/0:202:192,9:192:7398:9:343:0,-29.3896,-634.353 0/0:101:93,8:93:3561:8:297:0,-3.32283,-293.481 dDocent_Contig_1670 15 . G A 552.681 . AB=0.230769;ABP=76.6733;AC=2;AF=0.25;AN=8;AO=27;CIGAR=1X;DP=248;DPB=248;DPRA=0.89313;EPP=61.6401;EPPR=482.906;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.285068;PAO=0;PQA=0;PQR=0;PRO=0;QA=1025;QR=8726;RO=221;RPL=0;RPP=61.6401;RPPR=482.906;RPR=27;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=221;SRP=482.906;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:98:76,22:76:3005:22:830:-45.5087,0,-241.04 0/0:85:85,0:85:3335:0:0:0,-25.5875,-300.206 0/0:46:46,0:46:1840:0:0:0,-13.8474,-165.809 0/1:19:14,5:14:546:5:195:-12.2031,0,-43.7592 dDocent_Contig_1671 92 . T C 3807.05 . AB=0.485804;ABP=3.56516;AC=4;AF=0.5;AN=8;AO=154;CIGAR=1X;DP=317;DPB=317;DPRA=0;EPP=337.417;EPPR=356.96;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5338;QR=5761;RO=163;RPL=154;RPP=337.417;RPPR=356.96;RPR=0;RUN=1;SAF=154;SAP=337.417;SAR=0;SRF=163;SRP=356.96;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:66:56,10:56:1960:10:350:-11.9695,0,-156.806 0/1:168:51,117:51:1820:117:4067:-315.666,0,-113.508 0/1:51:40,11:40:1417:11:384:-19.5431,0,-112.476 0/1:32:16,16:16:564:16:537:-39.0154,0,-41.4573 dDocent_Contig_1672 24 . A T 372.889 . AB=0.117302;ABP=436.802;AC=2;AF=0.25;AN=8;AO=71;CIGAR=1X;DP=752;DPB=752;DPRA=0;EPP=157.185;EPPR=1477.44;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2819;QR=26968;RO=679;RPL=0;RPP=157.185;RPPR=1477.44;RPR=71;RUN=1;SAF=71;SAP=157.185;SAR=0;SRF=679;SRP=1477.44;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:208:193,15:193:7660:15:602:0,-8.09903,-634.508 0/0:203:185,16:185:7331:16:642:0,-2.71886,-601.325 0/1:192:175,17:175:6978:17:676:-3.37183,0,-569.909 0/1:149:126,23:126:4999:23:899:-36.3593,0,-404.937 dDocent_Contig_1673 62 . T C 957.981 . AB=0.357724;ABP=24.6368;AC=4;AF=0.5;AN=8;AO=44;CIGAR=1X;DP=123;DPB=123;DPRA=0;EPP=98.5551;EPPR=174.557;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.909091;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1522;QR=2624;RO=79;RPL=44;RPP=98.5551;RPPR=174.557;RPR=0;RUN=1;SAF=44;SAP=98.5551;SAR=0;SRF=79;SRP=174.557;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:44:34,10:34:1102:10:350:-18.5922,0,-86.2289 0/1:32:20,12:20:677:12:416:-28.1397,0,-51.6152 0/1:31:17,14:17:576:14:478:-34.0142,0,-42.8292 0/1:16:8,8:8:269:8:278:-20.5415,0,-19.722 dDocent_Contig_1674 21 . G A 5789.08 . AB=0.557185;ABP=12.696;AC=4;AF=0.5;AN=8;AO=190;CIGAR=1X;DP=341;DPB=341;DPRA=0;EPP=415.59;EPPR=330.903;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.968421;PAIREDR=0.880795;PAO=0;PQA=0;PQR=0;PRO=0;QA=7625;QR=6060;RO=151;RPL=0;RPP=415.59;RPPR=330.903;RPR=190;RUN=1;SAF=190;SAP=415.59;SAR=0;SRF=151;SRP=330.903;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:138:52,86:52:2103:86:3443:-268.369,0,-147.904 0/1:106:58,48:58:2327:48:1927:-141.716,0,-177.675 0/1:50:24,26:24:950:26:1045:-79.2889,0,-70.7441 0/1:47:17,30:17:680:30:1210:-95.0235,0,-47.3774 dDocent_Contig_1675 42 . A G 3114.31 . AB=0.104895;ABP=196.909;AC=1;AF=0.125;AN=8;AO=15;CIGAR=6M1X;DP=296;DPB=312;DPRA=0;EPP=35.5824;EPPR=367.818;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=605;QR=6615;RO=168;RPL=0;RPP=35.5824;RPPR=367.818;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=168;SRP=367.818;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:104:56,40,7:56:2192:40,7:1543,283:-109.822,0,-168.18,-103.346,-156.889,-281.47 0|0:88:41,47,0:41:1624:47,0:1808,0:-136.442,0,-119.908,-148.784,-134.057,-282.451 0|0:65:45,20,0:45:1774:20,0:791,0:-51.9426,0,-140.327,-65.4889,-146.347,-211.442 0|1:39:26,5,8:26:1025:5,8:198,322:-18.7135,-10.247,-93.0638,0,-68.0308,-81.9185 dDocent_Contig_1676 60 . T A 2904.91 . AB=0.546053;ABP=5.81036;AC=5;AF=0.625;AN=8;AO=97;CIGAR=1X;DP=167;DPB=167;DPRA=0;EPP=213.643;EPPR=152.842;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3806;QR=2708;RO=69;RPL=97;RPP=213.643;RPPR=152.842;RPR=0;RUN=1;SAF=97;SAP=213.643;SAR=0;SRF=69;SRP=152.842;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:57:17,39:17:650:39:1525:-120.324,0,-41.6428 0/1:60:46,14:46:1818:14:544:-31.2338,0,-145.779 0/1:35:5,30:5:205:30:1207:-98.3691,0,-8.29896 1/1:15:1,14:1:35:14:530:-44.5303,-1.01682,0 dDocent_Contig_1677 14 . T C 331.731 . AB=0.222222;ABP=51.2652;AC=3;AF=0.375;AN=8;AO=16;CIGAR=1X;DP=96;DPB=96;DPRA=1;EPP=37.7539;EPPR=176.728;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=641;QR=3179;RO=80;RPL=0;RPP=37.7539;RPPR=176.728;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=80;SRP=176.728;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:40:33,7:33:1323:7:281:-13.6204,0,-107.291 0/1:21:14,7:14:543:7:283:-19.5214,0,-42.8856 0/0:24:24,0:24:963:0:0:0,-7.22472,-86.9703 0/1:11:9,2:9:350:2:77:-3.9975,0,-28.5457 dDocent_Contig_1678 48 . T C 1390.68 . AB=0.112251;ABP=2166.91;AC=4;AF=0.5;AN=8;AO=186;CIGAR=1X;DP=1657;DPB=1657;DPRA=0;EPP=406.904;EPPR=2814.01;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7135;QR=55096;RO=1469;RPL=186;RPP=406.904;RPPR=2814.01;RPR=0;RUN=1;SAF=186;SAP=406.904;SAR=0;SRF=1469;SRP=3192.9;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:541:481,58:481:18089:58:2248:-39.8939,0,-1464.49 0/1:446:398,48:398:14942:48:1838:-31.4061,0,-1209.87 0/1:390:350,40:350:13072:40:1507:-18.4957,0,-1058.55 0/1:280:240,40:240:8993:40:1542:-54.7619,0,-724.822 dDocent_Contig_1679 111 . G A 69.8375 . AB=0.227273;ABP=17.2236;AC=2;AF=0.25;AN=8;AO=5;CIGAR=1X;DP=40;DPB=40;DPRA=1.22222;EPP=13.8677;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=170;QR=1168;RO=35;RPL=0;RPP=13.8677;RPPR=79.0118;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=79.0118;SRR=35;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:6:5,1:5:155:1:35:-1.69245,0,-12.4498 0/0:9:9,0:9:310:0:0:0,-2.70927,-28.2341 0/1:16:12,4:12:407:4:135:-7.6671,0,-32.1404 0/0:9:9,0:9:296:0:0:0,-2.70927,-26.9616 dDocent_Contig_1680 86 . T C 2218.7 . AB=0.625899;ABP=22.1474;AC=4;AF=0.5;AN=8;AO=87;CIGAR=1X;DP=139;DPB=139;DPRA=0;EPP=191.928;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2977;QR=1706;RO=52;RPL=87;RPP=191.928;RPPR=115.927;RPR=0;RUN=1;SAF=87;SAP=191.928;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:38:5,33:5:161:33:1125:-90.1158,0,-3.36857 0/1:31:6,25:6:210:25:863:-68.6546,0,-9.91053 0/1:46:28,18:28:902:18:615:-41.8238,0,-67.6306 0/1:24:13,11:13:433:11:374:-26.7635,0,-32.0656 dDocent_Contig_1681 13 . T G 11380.7 . AB=0.752083;ABP=267.948;AC=4;AF=0.5;AN=8;AO=361;CIGAR=1X;DP=480;DPB=480;DPRA=0;EPP=786.912;EPPR=261.416;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=2.77556e-17;PAIRED=0.99723;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=14310;QR=4729;RO=119;RPL=0;RPP=786.912;RPPR=261.416;RPR=361;RUN=1;SAF=361;SAP=786.912;SAR=0;SRF=119;SRP=261.416;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:209:54,155:54:2160:155:6167:-491.892,0,-131.657 0/1:124:13,111:13:523:111:4413:-359.799,0,-10.0897 0/1:80:41,39:41:1631:39:1552:-115.836,0,-122.943 0/1:67:11,56:11:415:56:2178:-176.03,0,-17.5168 dDocent_Contig_1682 10 . A G 1169.57 . AB=0.355372;ABP=24.9942;AC=3;AF=0.375;AN=8;AO=43;CIGAR=1X;DP=142;DPB=142;DPRA=1.92063;EPP=96.3836;EPPR=217.986;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1737;QR=3985;RO=99;RPL=0;RPP=96.3836;RPPR=217.986;RPR=43;RUN=1;SAF=43;SAP=96.3836;SAR=0;SRF=99;SRP=217.986;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:44:32,12:32:1278:12:486:-30.8463,0,-102.046 0/1:35:22,13:22:895:13:516:-36.2481,0,-70.318 0/1:42:24,18:24:965:18:735:-53.8295,0,-74.5038 0/0:21:21,0:21:847:0:0:0,-6.32163,-76.5392 dDocent_Contig_1683 12 . T C 3704.01 . AB=0.560538;ABP=10.109;AC=4;AF=0.5;AN=8;AO=125;CIGAR=1X;DP=223;DPB=223;DPRA=0;EPP=265.828;EPPR=215.815;GTI=0;LEN=1;MEANALT=1;MQM=58.92;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=0.824;PAIREDR=0.989796;PAO=0;PQA=0;PQR=0;PRO=0;QA=4944;QR=3949;RO=98;RPL=0;RPP=274.444;RPPR=215.815;RPR=125;RUN=1;SAF=124;SAP=265.828;SAR=1;SRF=98;SRP=215.815;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:69:27,42:27:1092:42:1667:-129.488,0,-77.7925 0/1:54:30,24:30:1199:24:954:-67.9244,0,-91.9279 0/1:57:31,26:31:1251:26:997:-71.8241,0,-95.7004 0/1:43:10,33:10:407:33:1326:-106.654,0,-24.0463 dDocent_Contig_1684 18 . T A 16783.6 . AB=0.452289;ABP=28.4969;AC=4;AF=0.5;AN=8;AO=583;CIGAR=1X;DP=1289;DPB=1289;DPRA=0;EPP=1268.98;EPPR=1533.9;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=23030;QR=28012;RO=705;RPL=0;RPP=1268.98;RPPR=1533.9;RPR=583;RUN=1;SAF=583;SAP=1268.98;SAR=0;SRF=705;SRP=1533.9;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:422:264,158:264:10545:158:6208:-431.47,0,-821.305 0/1:419:217,202:217:8626:202:7999:-593.363,0,-649.714 0/1:251:120,130:120:4755:130:5160:-388.622,0,-352.201 0/1:197:104,93:104:4086:93:3663:-270.396,0,-308.426 dDocent_Contig_1685 25 . T C 341.046 . AB=0.297872;ABP=19.6891;AC=1;AF=0.125;AN=8;AO=17;CIGAR=1X;DP=167;DPB=167;DPRA=1.52222;EPP=39.9253;EPPR=311.591;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.52;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.986667;PAO=0;PQA=0;PQR=0;PRO=0;QA=665;QR=5843;RO=150;RPL=0;RPP=39.9253;RPPR=328.731;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=148;SRP=311.591;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:54:52,2:52:2046:2:78:0,-8.85284,-173.958 0/1:47:33,14:33:1306:14:546:-35.3265,0,-103.664 0/0:36:35,1:35:1313:1:41:0,-6.74251,-114.332 0/0:30:30,0:30:1178:0:0:0,-9.0309,-106.309 dDocent_Contig_1686 7 . T C 276.252 . AB=0.111111;ABP=452.264;AC=1;AF=0.125;AN=8;AO=61;CIGAR=1X;DP=1019;DPB=1019;DPRA=0;EPP=135.47;EPPR=2076.77;GTI=0;LEN=1;MEANALT=1.75;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2326;QR=36515;RO=955;RPL=0;RPP=135.47;RPPR=2076.77;RPR=61;RUN=1;SAF=61;SAP=135.47;SAR=0;SRF=955;SRP=2076.77;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:342:303,38:303:11619:38:1459:-28.546,0,-942.204 0/0:268:265,2:265:10093:2:64:0,-74.4783,-902.024 0/0:220:201,18:201:7687:18:690:0,-3.6071,-629.235 0/0:189:186,3:186:7116:3:113:0,-46.3557,-629.764 dDocent_Contig_1688 9 . C A 2409.9 . AB=0.2849;ABP=144.069;AC=4;AF=0.5;AN=8;AO=100;CIGAR=2X;DP=351;DPB=351;DPRA=0;EPP=220.158;EPPR=548.05;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3899;QR=9683;RO=251;RPL=0;RPP=220.158;RPPR=548.05;RPR=100;RUN=1;SAF=100;SAP=220.158;SAR=0;SRF=251;SRP=548.05;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:123:85,38:85:3273:38:1477:-96.1637,0,-257.67 0|1:80:60,20:60:2326:20:781:-46.5332,0,-185.459 0|1:78:58,20:58:2234:20:787:-47.6744,0,-177.794 0|1:70:48,22:48:1850:22:854:-56.1079,0,-145.668 dDocent_Contig_1690 17 . T G 3528.47 . AB=0.801724;ABP=94.7363;AC=5;AF=0.625;AN=8;AO=110;CIGAR=1X;DP=133;DPB=133;DPRA=0;EPP=241.872;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.918182;PAIREDR=0.869565;PAO=0;PQA=0;PQR=0;PRO=0;QA=4336;QR=903;RO=23;RPL=0;RPP=241.872;RPPR=52.9542;RPR=110;RUN=1;SAF=110;SAP=241.872;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:3,27:3:110:27:1090:-89.3551,0,-1.22764 0/1:54:11,43:11:434:43:1698:-136.796,0,-23.1578 0/1:32:9,23:9:359:23:900:-71.6722,0,-23.0407 1/1:17:0,17:0:0:17:648:-58.6442,-5.11751,0 dDocent_Contig_1691 20 . G A 4591.97 . AB=0.632;ABP=21.9282;AC=5;AF=0.625;AN=8;AO=140;CIGAR=1X;DP=186;DPB=186;DPRA=0;EPP=307.016;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5553;QR=1802;RO=46;RPL=0;RPP=307.016;RPPR=102.898;RPR=140;RUN=1;SAF=140;SAP=307.016;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:61:0,61:0:0:61:2425:-218.4,-18.3628,0 0/1:34:6,28:6:228:28:1134:-92.1033,0,-10.6446 0/1:57:34,23:34:1334:23:886:-62.8883,0,-103.168 0/1:34:6,28:6:240:28:1108:-89.7717,0,-11.741 dDocent_Contig_1692 22 . T C 796.751 . AB=0.300971;ABP=38.4496;AC=1;AF=0.125;AN=8;AO=31;CIGAR=1X;DP=235;DPB=235;DPRA=2.34091;EPP=70.3259;EPPR=445.991;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.97549;PAO=0;PQA=0;PQR=0;PRO=0;QA=1237;QR=7775;RO=204;RPL=0;RPP=70.3259;RPPR=445.991;RPR=31;RUN=1;SAF=31;SAP=70.3259;SAR=0;SRF=204;SRP=445.991;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:103:72,31:72:2745:31:1237:-80.596,0,-216.194 0/0:68:68,0:68:2606:0:0:0,-20.47,-234.701 0/0:37:37,0:37:1363:0:0:0,-11.1381,-122.932 0/0:27:27,0:27:1061:0:0:0,-8.12781,-95.7887 dDocent_Contig_1694 12 . C T 483.617 . AB=0.136029;ABP=315.99;AC=3;AF=0.375;AN=8;AO=44;CIGAR=1X3M;DP=372;DPB=372;DPRA=0;EPP=98.5551;EPPR=540.508;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=59.7837;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.896552;PAO=0;PQA=0;PQR=0;PRO=0;QA=1723;QR=12561;RO=319;RPL=0;RPP=98.5551;RPPR=695.71;RPR=44;RUN=1;SAF=44;SAP=98.5551;SAR=0;SRF=300;SRP=540.508;SRR=19;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:139:115,7,15:115:4476:7,15:277,598:-14.6294,-26.4511,-392.145,0,-345.007,-363.289 0|0:100:93,0,7:93:3662:0,7:0,269:0,-27.9958,-329.22,-5.5308,-307.139,-305.032 0|1:91:75,0,16:75:2977:0,16:0,611:-27.9127,-50.49,-295.547,0,-245.441,-240.625 0|1:42:36,0,6:36:1446:0,6:0,245:-9.78621,-20.6233,-139.738,0,-119.521,-117.715 dDocent_Contig_1696 70 . G A 133.031 . 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AB=0.134615;ABP=63.3104;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X1M2I1M2X2M1X2M;DP=182;DPB=180;DPRA=1.2;EPP=18.2106;EPPR=356.96;GTI=0;LEN=1;MEANALT=3;MQM=42;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0.981595;PAO=0;PQA=0;PQR=0;PRO=0;QA=274;QR=6345;RO=163;RPL=0;RPP=18.2106;RPPR=356.96;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=163;SRP=356.96;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:52:40,7,0:40:1575:7,0:274,0:-9.38418,0,-127.52,-21.4254,-129.628,-151.026 0|0:51:47,0,0:47:1821:0,0:0,0:0,-14.1484,-163.774,-14.1484,-163.774,-163.774 0|0:38:36,0,2:36:1396:0,2:0,76:0,-10.8371,-125.562,-4.79103,-119.867,-119.265 0|0:41:40,0,0:40:1553:0,0:0,0:0,-12.0412,-139.641,-12.0412,-139.641,-139.641 dDocent_Contig_1698 9 . A T 237.006 . AB=0;ABP=0;AC=0;AF=0;AN=8;AO=2;CIGAR=1M1I1X1M2X2M;DP=149;DPB=155.429;DPRA=0;EPP=7.35324;EPPR=189.757;GTI=0;LEN=1;MEANALT=4;MQM=8;MQMR=60;NS=4;NUMALT=7;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=16;QR=3316;RO=86;RPL=0;RPP=7.35324;RPPR=189.757;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=86;SRP=189.757;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:41:22,0,0,1,3,12,3,0:22:851:0,0,1,3,12,3,0:0,0,24,72,219,114,0:-6.30864,-12.9313,-82.9551,-12.9313,-82.9551,-82.9551,-11.3398,-81.3681,-81.3681,-81.067,-8.15595,-78.1943,-78.1943,-76.6076,-77.2912,0,-70.0614,-70.0614,-68.4771,-65.3095,-66.4491,-10.1541,-80.1846,-80.1846,-78.598,-75.4253,-67.3024,-79.2815,-12.9313,-82.9551,-82.9551,-81.3681,-78.1943,-70.0614,-80.1846,-82.9551 0|0:59:33,0,0,5,4,2,6,8:33:1273:0,0,5,4,2,6,8:0,0,110,90,17,235,294:-14.1544,-24.0883,-128.711,-24.0883,-128.711,-128.711,-17.0491,-121.672,-121.672,-120.167,-18.2789,-122.902,-122.902,-115.865,-121.698,-23.6563,-128.273,-128.273,-121.235,-122.466,-127.671,-15.6726,-120.295,-120.295,-113.259,-114.489,-119.859,-118.489,0,-104.672,-104.672,-97.6341,-98.8644,-104.235,-96.2575,-102.264 0|0:32:23,2,0,3,2,2,0,0:23:882:2,0,3,2,2,0,0:16,0,72,63,20,0,0:0,-6.59479,-78.5282,-6.92369,-79.1302,-79.473,-2.1345,-74.3782,-74.7181,-73.815,-2.09034,-74.3384,-74.6797,-69.9259,-74.0777,-6.25391,-78.4532,-78.7934,-74.0412,-74.0015,-78.1914,-6.92369,-79.1302,-79.473,-74.7181,-74.6797,-78.7934,-79.473,-6.92369,-79.1302,-79.473,-74.7181,-74.6797,-78.7934,-79.473,-79.473 0|0:17:8,0,2,0,6,0,1,0:8:310:0,2,0,6,0,1,0:0,24,0,144,0,40,0:-7.20411,-9.61235,-35.1827,-8.59377,-34.1657,-33.5637,-9.61235,-35.1827,-34.1657,-35.1827,0,-25.6838,-24.6904,-25.6838,-23.8776,-9.61235,-35.1827,-34.1657,-35.1827,-25.6838,-35.1827,-9.11369,-34.6854,-33.6718,-34.6854,-25.1967,-34.6854,-34.3844,-9.61235,-35.1827,-34.1657,-35.1827,-25.6838,-35.1827,-34.6854,-35.1827 dDocent_Contig_1699 119 . C T 147.479 . AB=0.120172;ABP=294.985;AC=3;AF=0.375;AN=8;AO=32;CIGAR=1X;DP=331;DPB=331;DPRA=0;EPP=72.4974;EPPR=652.281;GTI=0;LEN=1;MEANALT=1;MQM=55.9375;MQMR=43.4181;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1121;QR=9893;RO=299;RPL=0;RPP=72.4974;RPPR=652.281;RPR=32;RUN=1;SAF=0;SAP=72.4974;SAR=32;SRF=0;SRP=652.281;SRR=299;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:98:94,4:94:3092:4:144:0,-16.1873,-258.998 0/1:136:122,14:122:4059:14:501:-4.29978,0,-312.52 0/1:60:50,10:50:1635:10:340:-12.8121,0,-122.562 0/1:37:33,4:33:1107:4:136:-1.42856,0,-86.6893 dDocent_Contig_1700 9 . G A 3658.25 . 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AB=0.324561;ABP=33.4871;AC=2;AF=0.25;AN=8;AO=46;CIGAR=1X;DP=324;DPB=324;DPRA=0;EPP=102.898;EPPR=604.508;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=0.99278;PAO=0;PQA=0;PQR=0;PRO=0;QA=1828;QR=10913;RO=277;RPL=0;RPP=102.898;RPPR=604.508;RPR=46;RUN=1;SAF=46;SAP=102.898;SAR=0;SRF=277;SRP=604.508;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:86:85,1:85:3358:1:41:0,-21.794,-298.182 0/0:124:116,8:116:4584:8:322:0,-7.97958,-383.141 0/1:67:59,7:59:2300:7:285:-5.74732,0,-186.884 0/1:47:17,30:17:671:30:1180:-92.3267,0,-46.5657 dDocent_Contig_1702 20 . C A 6924.49 . 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AB=0.202899;ABP=55.9124;AC=3;AF=0.375;AN=8;AO=14;CIGAR=1X;DP=75;DPB=75;DPRA=3.83333;EPP=33.4109;EPPR=135.47;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=560;QR=2421;RO=61;RPL=14;RPP=33.4109;RPPR=135.47;RPR=0;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=61;SRP=135.47;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:39:32,7:32:1265:7:280:-13.832,0,-102.388 0/1:16:11,5:11:439:5:200:-13.5626,0,-35.0493 0/1:14:12,2:12:477:2:80:-3.37716,0,-39.0662 0/0:6:6,0:6:240:0:0:0,-1.80618,-21.9757 dDocent_Contig_1704 152 . A G 61.5628 . AB=0.117647;ABP=67.7713;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=129;DPB=129;DPRA=3.57576;EPP=20.3821;EPPR=265.758;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=325;QR=4752;RO=121;RPL=0;RPP=20.3821;RPPR=265.758;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=265.758;SRR=121;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:51:45,6:45:1753:6:245:-7.07694,0,-142.634 0/0:49:48,1:48:1889:1:39:0,-10.8539,-166.313 0/0:18:17,1:17:671:1:41:0,-1.32397,-56.6207 0/0:11:11,0:11:439:0:0:0,-3.31133,-39.8646 dDocent_Contig_1705 12 . G T 722.495 . AB=0.097561;ABP=118.363;AC=1;AF=0.125;AN=8;AO=11;CIGAR=1X3M1X1M1X2M1X2M1X;DP=206;DPB=206;DPRA=0;EPP=26.8965;EPPR=352.617;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=429;QR=6316;RO=161;RPL=0;RPP=26.8965;RPPR=352.617;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=161;SRP=352.617;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:82:48,2,8,24:48:1861:2,8,24:79,310,934:-62.2983,-70.2464,-222.529,-51.2834,-197.666,-201.759,0,-146.383,-127.419,-145.659 0|1:20:13,5,0,2:13:512:5,0,2:198,0,76:-12.395,0,-40.6274,-16.3083,-42.1325,-58.4305,-10.08,-35.9015,-52.1991,-51.597 0|0:74:71,0,2,0:71:2790:0,2,0:0,79,0:0,-21.3731,-250.859,-14.8622,-244.358,-243.755,-21.3731,-250.859,-244.358,-250.859 0|0:30:29,0,1,0:29:1153:0,1,0:0,40,0:0,-8.72987,-103.66,-5.03522,-100.365,-100.064,-8.72987,-103.66,-100.365,-103.66 dDocent_Contig_1706 8 . T C 4457.98 . AB=0.484568;ABP=3.68051;AC=4;AF=0.5;AN=8;AO=157;CIGAR=1X;DP=324;DPB=324;DPRA=0;EPP=343.931;EPPR=365.646;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6086;QR=6406;RO=167;RPL=0;RPP=343.931;RPPR=365.646;RPR=157;RUN=1;SAF=157;SAP=343.931;SAR=0;SRF=167;SRP=365.646;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:98:54,44:54:2073:44:1714:-125.013,0,-157.301 0/1:114:61,53:61:2344:53:2057:-151.042,0,-176.855 0/1:82:42,40:42:1616:40:1547:-114.815,0,-121.02 0/1:30:10,20:10:373:20:768:-60.4164,0,-24.8867 dDocent_Contig_1707 65 . C A 36.6802 . AB=0.142857;ABP=26.2761;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=110;DPB=110;DPRA=0.707865;EPP=9.52472;EPPR=235.358;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=117;QR=3988;RO=107;RPL=3;RPP=9.52472;RPPR=235.358;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=107;SRP=235.358;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:18,3:18:657:3:117:-4.58875,0,-53.1309 0/0:29:29,0:29:1098:0:0:0,-8.72987,-99.1231 0/0:37:37,0:37:1398:0:0:0,-11.1381,-126.104 0/0:23:23,0:23:835:0:0:0,-6.92369,-75.4574 dDocent_Contig_1708 7 . T C 4852.02 . AB=0.225366;ABP=674.512;AC=4;AF=0.5;AN=8;AO=231;CIGAR=1X;DP=1025;DPB=1025;DPRA=0;EPP=504.62;EPPR=1724.99;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=8871;QR=30304;RO=793;RPL=0;RPP=504.62;RPPR=1724.99;RPR=231;RUN=1;SAF=231;SAP=504.62;SAR=0;SRF=793;SRP=1724.99;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:366:302,64:302:11565:64:2472:-112.498,0,-930.208 0/1:251:174,76:174:6638:76:2909:-186.401,0,-521.744 0/1:249:184,65:184:7012:65:2494:-149.705,0,-556.011 0/1:159:133,26:133:5089:26:996:-42.0863,0,-410.16 dDocent_Contig_1709 51 . A C 384.437 . AB=0.22093;ABP=61.1856;AC=4;AF=0.5;AN=8;AO=19;CIGAR=1X;DP=86;DPB=86;DPRA=0;EPP=44.2683;EPPR=148.499;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=759;QR=2649;RO=67;RPL=19;RPP=44.2683;RPPR=148.499;RPR=0;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=67;SRP=148.499;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:20,8:20:783:8:324:-21.1004,0,-62.3615 0/1:22:19,3:19:751:3:119:-4.47273,0,-61.2906 0/1:24:20,4:20:792:4:164:-7.92518,0,-64.3743 0/1:12:8,4:8:323:4:152:-10.4348,0,-25.8262 dDocent_Contig_1710 14 . T A 4880.9 . AB=0.235294;ABP=561.717;AC=4;AF=0.5;AN=8;AO=216;CIGAR=1X;DP=918;DPB=918;DPRA=0;EPP=472.048;EPPR=1523.04;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=8543;QR=28066;RO=700;RPL=0;RPP=472.048;RPPR=1523.04;RPR=216;RUN=1;SAF=216;SAP=472.048;SAR=0;SRF=700;SRP=1523.04;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:277:232,45:232:9308:45:1820:-80.6186,0,-753.73 0/1:307:203,104:203:8132:104:4100:-276.565,0,-638.999 0/1:185:145,40:145:5806:40:1559:-84.8583,0,-466.638 0/1:149:120,27:120:4820:27:1064:-51.5373,0,-389.185 dDocent_Contig_1711 33 . T A 85.4032 . AB=0.11;ABP=135.123;AC=1;AF=0.125;AN=8;AO=20;CIGAR=1X;DP=791;DPB=791;DPRA=0.700654;EPP=46.4397;EPPR=1677.22;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.997406;PAO=0;PQA=0;PQR=0;PRO=0;QA=801;QR=30821;RO=771;RPL=0;RPP=46.4397;RPPR=1677.22;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=771;SRP=1677.22;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:239:231,8:231:9175:8:322:0,-42.5996,-795.855 0/0:255:255,0:255:10240:0:0:0,-76.7626,-920.901 0/0:197:196,1:196:7880:1:40:0,-55.3072,-704.761 0/1:100:89,11:89:3526:11:439:-9.76216,0,-287.269 dDocent_Contig_1712 47 . C T 204.206 . AB=0.125828;ABP=186.636;AC=2;AF=0.25;AN=8;AO=29;CIGAR=1X;DP=370;DPB=370;DPRA=0;EPP=57.5966;EPPR=122.53;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1152;QR=13326;RO=341;RPL=28;RPP=57.5966;RPPR=122.53;RPR=1;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=341;SRP=743.482;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:130:127,3:127:4980:3:120:0,-27.9462,-436.958 0/1:123:107,16:107:4156:16:633:-20.2804,0,-337.039 0/0:89:82,7:82:3208:7:281:0,-1.12933,-263.165 0/1:28:25,3:25:982:3:118:-2.57405,0,-80.2572 dDocent_Contig_1713 12 . T C 21985 . AB=0.88601;ABP=502.584;AC=6;AF=0.75;AN=8;AO=660;CIGAR=1X;DP=723;DPB=723;DPRA=0;EPP=1436.18;EPPR=139.813;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.998485;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=26545;QR=2542;RO=63;RPL=0;RPP=1436.18;RPPR=139.813;RPR=660;RUN=1;SAF=660;SAP=1436.18;SAR=0;SRF=63;SRP=139.813;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:213:28,185:28:1126:185:7382:-599.887,0,-37.5021 1/1:258:18,240:18:736:240:9670:-803.092,-11.1034,0 0/1:173:16,157:16:639:157:6328:-517.156,0,-5.76661 1/1:79:1,78:1:41:78:3165:-280.809,-19.6868,0 dDocent_Contig_1715 10 . T C 26751.9 . AB=0.771739;ABP=475.07;AC=5;AF=0.625;AN=8;AO=826;CIGAR=1X;DP=1016;DPB=1016;DPRA=0;EPP=1796.65;EPPR=415.59;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=33108;QR=7568;RO=190;RPL=0;RPP=1796.65;RPPR=415.59;RPR=826;RUN=1;SAF=826;SAP=1796.65;SAR=0;SRF=190;SRP=415.59;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:280:22,258:22:853:258:10318:-850.85,-7.21667,0 0/1:307:72,235:72:2877:235:9430:-755.675,0,-166.609 0/1:268:75,193:75:3010:193:7754:-616.754,0,-190.31 0/1:161:21,140:21:828:140:5606:-455.875,0,-26.3675 dDocent_Contig_1716 71 . C T 9380.88 . AB=0.851064;ABP=254.578;AC=6;AF=0.75;AN=8;AO=306;CIGAR=1X;DP=349;DPB=349;DPRA=0;EPP=667.481;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.996732;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=11524;QR=1693;RO=42;RPL=306;RPP=667.481;RPPR=94.2121;RPR=0;RUN=1;SAF=306;SAP=667.481;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:117:11,106:11:446:106:4014:-326.106,0,-5.27546 0/1:118:24,94:24:961:94:3497:-279.318,0,-51.2711 1/1:88:7,81:7:286:81:3101:-253.101,-0.375822,0 1/1:26:0,25:0:0:25:912:-82.0051,-7.52575,0 dDocent_Contig_1717 41 . C T 155.727 . AB=0.195122;ABP=36.112;AC=2;AF=0.25;AN=8;AO=8;CIGAR=1X;DP=80;DPB=80;DPRA=1.05128;EPP=20.3821;EPPR=159.356;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=328;QR=2892;RO=72;RPL=0;RPP=20.3821;RPPR=159.356;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=72;SRP=159.356;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:18,2:18:720:2:82:-1.75908,0,-59.1045 0/1:21:15,6:15:605:6:246:-16.1985,0,-48.4671 0/0:23:23,0:23:926:0:0:0,-6.92369,-83.6433 0/0:16:16,0:16:641:0:0:0,-4.81648,-58.0245 dDocent_Contig_1718 209 . N G 285.423 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=8;CIGAR=1X;DP=8;DPB=8;DPRA=0;EPP=20.3821;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=53.25;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=307;QR=0;RO=0;RPL=8;RPP=20.3821;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:4:0,4:0:0:4:162:-14.847,-1.20412,0 1/1:4:0,4:0:0:4:145:-13.3934,-1.20412,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_1719 21 . G T 64.3443 . AB=0.133333;ABP=55.5599;AC=2;AF=0.25;AN=8;AO=7;CIGAR=1X;DP=84;DPB=84;DPRA=1.14035;EPP=18.2106;EPPR=170.214;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.935065;PAO=0;PQA=0;PQR=0;PRO=0;QA=283;QR=3092;RO=77;RPL=0;RPP=18.2106;RPPR=170.214;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=77;SRP=170.214;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:19:19,0:19:760:0:0:0,-5.71957,-68.7212 0/1:33:30,3:30:1204:3:122:-1.4385,0,-98.6941 0/1:12:9,3:9:365:3:120:-7.57495,0,-29.6025 0/0:20:19,1:19:763:1:41:0,-1.92603,-64.8956 dDocent_Contig_1720 28 . G A 140.047 . AB=0.3;ABP=9.95901;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=108;DPB=108;DPRA=0.681818;EPP=16.0391;EPPR=224.5;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.902;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=232;QR=4055;RO=102;RPL=0;RPP=16.0391;RPPR=224.5;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=102;SRP=224.5;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:17:17,0:17:696:0:0:0,-5.11751,-62.9668 0/0:62:62,0:62:2463:0:0:0,-18.6639,-221.814 0/1:20:14,6:14:561:6:232:-15.2265,0,-44.8118 0/0:9:9,0:9:335:0:0:0,-2.70927,-30.4855 dDocent_Contig_1721 19 . A G 81.555 . AB=0.125;ABP=71.4117;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=151;DPB=151;DPRA=1.76842;EPP=18.2106;EPPR=315.702;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.8194;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.909722;PAO=0;PQA=0;PQR=0;PRO=0;QA=284;QR=5766;RO=144;RPL=0;RPP=18.2106;RPPR=315.702;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=144;SRP=315.702;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:56:49,7:49:1971:7:284:-9.07631,0,-160.026 0/0:48:48,0:48:1899:0:0:0,-14.4494,-171.113 0/0:20:20,0:20:807:0:0:0,-6.0206,-72.9467 0/0:27:27,0:27:1089:0:0:0,-8.12781,-98.2928 dDocent_Contig_1723 1 . N G 143.276 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=53.5;MQMR=0;NS=1;NUMALT=1;ODDS=6.27915;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=156;QR=0;RO=0;RPL=0;RPP=11.6962;RPPR=0;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:4:0,4:0:0:4:156:-14.3267,-1.20412,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_1725 28 . C T 17558.2 . AB=0.204606;ABP=858.692;AC=6;AF=0.75;AN=8;AO=231;CIGAR=1X2M;DP=1129;DPB=1129;DPRA=0;EPP=504.62;EPPR=741.311;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.852941;PAO=0;PQA=0;PQR=0;PRO=0;QA=8987;QR=13347;RO=340;RPL=0;RPP=504.62;RPPR=741.311;RPR=231;RUN=1;SAF=231;SAP=504.62;SAR=0;SRF=340;SRP=741.311;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:398:101,189,108:101:3972:189,108:7401,4182:-594.943,-16.7947,-286.601,-281.85,0,-576.037 0|1:344:141,163,40:141:5510:163,40:6338,1559:-478.356,0,-403.894,-392.669,-324.831,-833.591 1|1:243:41,143,59:41:1624:143,59:5567,2334:-503.563,-58.4173,-149.035,-323.821,0,-439.727 0|1:144:57,63,24:57:2241:63,24:2453,912:-184.444,0,-165.374,-126.83,-109.567,-303.937 dDocent_Contig_1726 30 . T C 10573.5 . AB=0.855019;ABP=297.499;AC=5;AF=0.625;AN=8;AO=325;CIGAR=1X;DP=369;DPB=369;DPRA=0;EPP=708.739;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.996923;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=12894;QR=1751;RO=44;RPL=0;RPP=708.739;RPPR=98.5551;RPR=325;RUN=1;SAF=325;SAP=708.739;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:141:16,125:16:641:125:4956:-403.479,0,-15.5798 1/1:100:5,95:5:202:95:3789:-322.455,-11.5409,0 0/1:66:6,60:6:233:60:2345:-191.336,0,-1.46869 0/1:62:17,45:17:675:45:1804:-143.909,0,-42.4146 dDocent_Contig_1727 30 . A C 1221.35 . AB=0.251163;ABP=118.644;AC=4;AF=0.5;AN=8;AO=54;CIGAR=1X1M1X;DP=215;DPB=215;DPRA=0;EPP=120.27;EPPR=352.617;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.962963;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2122;QR=6379;RO=161;RPL=0;RPP=120.27;RPPR=352.617;RPR=54;RUN=1;SAF=54;SAP=120.27;SAR=0;SRF=161;SRP=352.617;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:76:52,24:52:2080:24:947:-62.6544,0,-164.509 0|1:36:30,6:30:1191:6:240:-11.1386,0,-96.6319 0|1:64:51,13:51:2033:13:522:-28.062,0,-163.899 0|1:39:28,11:28:1075:11:413:-25.7695,0,-85.2992 dDocent_Contig_1728 31 . A T 41.0425 . AB=0.116667;ABP=79.5909;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=157;DPB=157;DPRA=1.85567;EPP=18.2106;EPPR=328.731;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=256;QR=5989;RO=150;RPL=0;RPP=18.2106;RPPR=328.731;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=150;SRP=328.731;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:23:23,0:23:905:0:0:0,-6.92369,-81.7601 0/0:37:37,0:37:1479:0:0:0,-11.1381,-133.36 0/1:60:53,7:53:2130:7:256:-5.32607,0,-173.815 0/0:37:37,0:37:1475:0:0:0,-11.1381,-132.999 dDocent_Contig_1729 17 . C T 64.8046 . AB=0.181818;ABP=22.3561;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=177;DPB=177;DPRA=0.683908;EPP=18.2106;EPPR=363.526;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.988235;PAO=0;PQA=0;PQR=0;PRO=0;QA=278;QR=6837;RO=170;RPL=0;RPP=18.2106;RPPR=372.161;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=169;SRP=363.526;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:58:58,0:58:2323:0:0:0,-17.4597,-209.222 0/0:43:42,1:42:1698:1:41:0,-8.84972,-148.943 0/0:54:52,2:52:2095:2:82:0,-8.47594,-180.946 0/1:22:18,4:18:721:4:155:-7.70231,0,-58.5916 dDocent_Contig_1730 18 . G T 107.82 . AB=0.123457;ABP=102.764;AC=1;AF=0.125;AN=8;AO=10;CIGAR=1X;DP=380;DPB=380;DPRA=0.812709;EPP=24.725;EPPR=806.455;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=397;QR=14790;RO=370;RPL=0;RPP=24.725;RPPR=806.455;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=370;SRP=806.455;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:81:71,10:71:2858:10:397:-11.7028,0,-232.928 0/0:138:138,0:138:5521:0:0:0,-41.5421,-496.71 0/0:109:109,0:109:4348:0:0:0,-32.8123,-391.265 0/0:52:52,0:52:2063:0:0:0,-15.6536,-185.849 dDocent_Contig_1731 16 . A G 2722.91 . AB=0.54386;ABP=5.8675;AC=4;AF=0.5;AN=8;AO=93;CIGAR=1X;DP=171;DPB=171;DPRA=0;EPP=204.957;EPPR=172.385;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.989247;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3645;QR=3110;RO=78;RPL=0;RPP=204.957;RPPR=172.385;RPR=93;RUN=1;SAF=93;SAP=204.957;SAR=0;SRF=78;SRP=172.385;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:55:21,34:21:835:34:1319:-102.41,0,-58.907 0/1:52:28,24:28:1136:24:948:-69.9654,0,-86.8658 0/1:36:15,21:15:577:21:823:-63.5446,0,-41.4208 0/1:28:14,14:14:562:14:555:-41.8597,0,-42.4934 dDocent_Contig_1733 26 . T A 8790.1 . AB=0.835616;ABP=145.852;AC=6;AF=0.75;AN=8;AO=262;CIGAR=1X;DP=290;DPB=290;DPRA=0;EPP=571.936;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=10443;QR=1109;RO=28;RPL=0;RPP=571.936;RPPR=63.8115;RPR=262;RUN=1;SAF=262;SAP=571.936;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:89:0,89:0:0:89:3543:-318.897,-26.7917,0 0/1:89:16,73:16:628:73:2916:-235.745,0,-30.0516 0/1:57:8,49:8:319:49:1931:-156.833,0,-11.9178 1/1:55:4,51:4:162:51:2053:-169.978,-1.5899,0 dDocent_Contig_1734 45 . C T 1096.32 . AB=0.222642;ABP=180.08;AC=3;AF=0.375;AN=8;AO=59;CIGAR=1X;DP=390;DPB=390;DPRA=0.706667;EPP=131.127;EPPR=713.108;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2138;QR=12996;RO=331;RPL=0;RPP=131.127;RPPR=713.108;RPR=59;RUN=1;SAF=59;SAP=131.127;SAR=0;SRF=331;SRP=721.768;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:125:125,0:125:4926:0:0:0,-37.6287,-443.25 0/1:112:76,36:76:3016:36:1300:-83.566,0,-237.826 0/1:97:81,16:81:3168:16:585:-23.7723,0,-256.02 0/1:56:49,7:49:1886:7:253:-6.25981,0,-153.078 dDocent_Contig_1735 16 . T A 279.826 . AB=0.121951;ABP=257.496;AC=2;AF=0.25;AN=8;AO=31;CIGAR=1X;DP=422;DPB=422;DPRA=0.829201;EPP=70.3259;EPPR=852.056;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.987212;PAO=0;PQA=0;PQR=0;PRO=0;QA=1259;QR=15579;RO=391;RPL=0;RPP=70.3259;RPPR=852.056;RPR=31;RUN=1;SAF=31;SAP=70.3259;SAR=0;SRF=391;SRP=852.056;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:121:121,0:121:4819:0:0:0,-36.4246,-433.607 0/1:103:90,13:90:3594:13:525:-16.5904,0,-292.477 0/0:96:90,6:90:3592:6:243:0,-6.6507,-301.057 0/1:102:90,12:90:3574:12:491:-13.8359,0,-290.974 dDocent_Contig_1736 7 . C T 427.667 . AB=0.0626781;ABP=1752.23;AC=2;AF=0.25;AN=8;AO=66;CIGAR=1X3M1X3M;DP=1053;DPB=1053;DPRA=0;EPP=146.327;EPPR=1371.6;GTI=0;LEN=1;MEANALT=10;MQM=60;MQMR=59.9944;NS=4;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=0.908192;PAO=0;PQA=0;PQR=0;PRO=0;QA=2544;QR=27326;RO=708;RPL=0;RPP=146.327;RPPR=1540.41;RPR=66;RUN=1;SAF=66;SAP=146.327;SAR=0;SRF=688;SRP=1371.6;SRR=20;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:296:187,33,11,27,15:187:7242:33,11,27,15:1299,421,920,588:-16.7568,-46.8951,-631.905,-38.49,-607.291,-630.172,0,-568.814,-560.454,-586.875,-24.6792,-593.486,-585.129,-546.649,-615.162 0|1:348:229,36,24,17,21:229:8841:36,24,17,21:1426,931,593,832:-7.58437,-42.2639,-757.521,0,-691.864,-718.932,-29.0896,-720.94,-678.736,-750.115,-8.01591,-699.877,-657.673,-686.749,-727.848 0|0:273:198,26,16,4,20:198:7636:26,16,4,20:1021,622,148,790:-5.43354,-41.074,-660.287,-13.8982,-616.999,-636.207,-52.9315,-656.012,-628.922,-678.834,0,-603.111,-576.018,-615.033,-621.115 0|1:136:94,10,15,6,0:94:3607:10,15,6,0:399,570,238,0:-18.4814,-39.0572,-332.102,0,-288.368,-291.614,-27.1743,-315.521,-276.537,-321.478,-46.7782,-335.113,-296.13,-323.284,-342.877 dDocent_Contig_1737 26 . T C 14239.3 . AB=0.37799;ABP=165.154;AC=4;AF=0.5;AN=8;AO=474;CIGAR=1X3M;DP=1254;DPB=1254;DPRA=0;EPP=980.833;EPPR=665.742;GTI=0;LEN=1;MEANALT=7.25;MQM=57.443;MQMR=48.5514;NS=4;NUMALT=4;ODDS=0;PAIRED=0.949367;PAIREDR=0.741433;PAO=0;PQA=0;PQR=0;PRO=0;QA=18656;QR=12634;RO=321;RPL=12;RPP=930.696;RPPR=648.912;RPR=462;RUN=1;SAF=468;SAP=980.833;SAR=6;SRF=319;SRP=682.789;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:396:106,22,36,156,59:106:4154:22,36,156,59:882,1377,6132,2261:-468.621,-430.841,-730.372,-391.696,-628.158,-687.011,0,-236.461,-197.315,-259.192,-318.137,-554.599,-515.453,-123.754,-606.529 0|1:374:95,26,35,134,73:95:3751:26,35,134,73:1006,1374,5287,2777:-405.258,-351.498,-602.482,-320.851,-497.303,-569.126,0,-176.446,-145.798,-218.469,-206.533,-382.982,-352.335,-31.4748,-443.366 0|1:262:60,10,27,110,52:60:2377:10,27,110,52:388,1048,4352,1966:-337.221,-323.676,-500.632,-269.179,-417.538,-441.018,0,-148.358,-93.8598,-146.853,-194.153,-342.51,-288.013,-18.8313,-358.464 0|1:222:60,10,24,74,51:60:2352:10,24,74,51:398,955,2885,1935:-218.319,-203.669,-377.311,-157.821,-301.761,-327.248,0,-143.937,-98.0867,-154.373,-78.6856,-222.622,-176.773,-18.9486,-239.982 dDocent_Contig_1738 10 . G T 3628.38 . AB=0.469466;ABP=5.13204;AC=4;AF=0.5;AN=8;AO=123;CIGAR=1X;DP=262;DPB=262;DPRA=0;EPP=270.101;EPPR=304.845;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4957;QR=5546;RO=139;RPL=0;RPP=270.101;RPPR=304.845;RPR=123;RUN=1;SAF=123;SAP=270.101;SAR=0;SRF=139;SRP=304.845;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:90:37,53:37:1463:53:2153:-166.842,0,-104.819 0/1:93:61,32:61:2458:32:1278:-87.2897,0,-193.363 0/1:54:33,21:33:1302:21:851:-60.6446,0,-101.186 0/1:25:8,17:8:323:17:675:-53.5511,0,-21.9132 dDocent_Contig_1739 34 . A T 202.263 . AB=0.5;ABP=3.0103;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=47;DPB=47;DPRA=1.27273;EPP=18.2106;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=281;QR=1571;RO=40;RPL=0;RPP=18.2106;RPPR=89.8692;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:8:8,0:8:321:0:0:0,-2.40824,-29.257 0/0:13:13,0:13:514:0:0:0,-3.91339,-46.6054 0/0:12:12,0:12:461:0:0:0,-3.61236,-41.8308 0/1:14:7,7:7:275:7:281:-21.4481,0,-20.9008 dDocent_Contig_1740 24 . C G 1654.8 . AB=0.204489;ABP=307.173;AC=4;AF=0.5;AN=8;AO=82;CIGAR=1X;DP=401;DPB=401;DPRA=0;EPP=181.071;EPPR=695.71;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.902439;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3227;QR=12814;RO=319;RPL=0;RPP=181.071;RPPR=695.71;RPR=82;RUN=1;SAF=82;SAP=181.071;SAR=0;SRF=319;SRP=695.71;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:129:106,23:106:4274:23:889:-41.4748,0,-345.759 0/1:105:94,11:94:3753:11:446:-8.88803,0,-306.162 0/1:105:72,33:72:2896:33:1292:-84.932,0,-229.123 0/1:62:47,15:47:1891:15:600:-35.6745,0,-151.722 dDocent_Contig_1741 109 . T A 114.923 . AB=0.195122;ABP=36.112;AC=2;AF=0.25;AN=8;AO=8;CIGAR=1X;DP=84;DPB=84;DPRA=0.953488;EPP=20.3821;EPPR=168.042;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=276;QR=2596;RO=76;RPL=0;RPP=20.3821;RPPR=168.042;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=168.042;SRR=76;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:32:25,7:25:844:7:241:-12.3935,0,-66.6355 0/0:34:34,0:34:1158:0:0:0,-10.235,-104.521 0/0:9:9,0:9:317:0:0:0,-2.70927,-28.8703 0/1:9:8,1:8:277:1:35:-0.789359,0,-22.5575 dDocent_Contig_1743 18 . A G 3829.51 . AB=0.0420561;ABP=392.82;AC=0;AF=0;AN=8;AO=9;CIGAR=1X3M1X;DP=250;DPB=250;DPRA=0;EPP=22.5536;EPPR=239.701;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.706422;PAO=0;PQA=0;PQR=0;PRO=0;QA=355;QR=4307;RO=109;RPL=0;RPP=22.5536;RPPR=239.701;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=109;SRP=239.701;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:88:26,7,55:26:1025:7,55:277,2191:-172.583,-157.612,-239.835,0,-61.5313,-67.773 0|0:100:60,1,39:60:2370:1,39:40,1553:-109.802,-124.568,-319.283,0,-191.718,-183.273 0|0:26:9,1,15:9:356:1,15:38,554:-42.5645,-42.1567,-71.1626,0,-26.1876,-24.7872 0|0:36:14,0,21:14:556:0,21:0,822:-63.4908,-67.7052,-113.481,0,-45.8991,-39.5774 dDocent_Contig_1744 9 . C A 3126.35 . AB=0.545;ABP=6.52809;AC=4;AF=0.5;AN=8;AO=109;CIGAR=1X;DP=200;DPB=200;DPRA=0;EPP=239.701;EPPR=200.614;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.967033;PAO=0;PQA=0;PQR=0;PRO=0;QA=4190;QR=3517;RO=91;RPL=0;RPP=239.701;RPPR=200.614;RPR=109;RUN=1;SAF=109;SAP=239.701;SAR=0;SRF=91;SRP=200.614;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:61:14,47:14:544:47:1811:-144.878,0,-30.9433 0/1:73:33,40:33:1269:40:1529:-115.906,0,-92.525 0/1:39:30,9:30:1168:9:347:-19.8498,0,-93.6773 0/1:27:14,13:14:536:13:503:-37.4911,0,-40.4563 dDocent_Contig_1745 39 . A G 22011.8 . AB=0.561927;ABP=46.5792;AC=4;AF=0.5;AN=8;AO=735;CIGAR=1X;DP=1308;DPB=1308;DPRA=0;EPP=1599.04;EPPR=1247.26;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.994558;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=28908;QR=22639;RO=573;RPL=0;RPP=1599.04;RPPR=1247.26;RPR=735;RUN=1;SAF=735;SAP=1599.04;SAR=0;SRF=573;SRP=1247.26;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:410:156,254:156:6188:254:10084:-783.516,0,-433.258 0/1:365:155,210:155:6131:210:8239:-631.203,0,-441.698 0/1:331:152,179:152:6003:179:6963:-526.735,0,-440.435 0/1:202:110,92:110:4317:92:3622:-265.21,0,-327.693 dDocent_Contig_1746 11 . T C 19883.3 . AB=0.040715;ABP=5538.16;AC=0;AF=0;AN=8;AO=123;CIGAR=1X3M1X;DP=3021;DPB=3021;DPRA=0;EPP=270.101;EPPR=3707.54;GTI=0;LEN=1;MEANALT=6.75;MQM=59.4553;MQMR=60;NS=4;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=0.998242;PAO=0;PQA=0;PQR=0;PRO=0;QA=4859;QR=66692;RO=1706;RPL=0;RPP=270.101;RPPR=3707.54;RPR=123;RUN=1;SAF=123;SAP=270.101;SAR=0;SRF=1706;SRP=3707.54;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:1092:658,47,40,120,218:658:25743:47,40,120,218:1858,1584,4664,8671:-515.76,-562.051,-2664.46,-583.476,-2548.24,-2687.99,-330.587,-2295.35,-2316.78,-2411.02,0,-1964.77,-1986.2,-1733.31,-2050.93 0|0:1085:582,27,64,81,325:582:22740:27,64,81,325:1072,2520,3138,12981:-893.875,-980.828,-2842.13,-861.784,-2642.97,-2711.95,-811.303,-2592.49,-2473.44,-2656.35,0,-1781.19,-1662.14,-1611.66,-1771.6 0|0:478:275,26,21,44,108:275:10747:26,21,44,108:1012,833,1710,4355:-276.189,-276.916,-1152.6,-290.406,-1091.86,-1167.6,-218.473,-1019.93,-1033.42,-1088.74,0,-801.465,-814.956,-743.022,-851.012 0|0:366:191,23,15,24,111:191:7462:23,15,24,111:917,592,933,4448:-307.995,-289.976,-896.499,-316.786,-854.716,-925.717,-288.826,-826.756,-853.566,-895.047,0,-537.931,-564.742,-536.781,-580.034 dDocent_Contig_1748 166 . A G 4004.27 . AB=0.582474;ABP=14.4721;AC=5;AF=0.625;AN=8;AO=131;CIGAR=3M1X;DP=213;DPB=213;DPRA=0;EPP=270.367;EPPR=181.071;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.992366;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5175;QR=3170;RO=82;RPL=129;RPP=270.367;RPPR=181.071;RPR=2;RUN=1;SAF=0;SAP=287.473;SAR=131;SRF=0;SRP=181.071;SRR=82;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:71:26,45:26:1014:45:1784:-139.397,0,-70.1744 0|1:99:50,49:50:1917:49:1962:-146.976,0,-142.938 1|1:19:1,18:1:40:18:672:-56.7914,-1.72389,0 0|1:24:5,19:5:199:19:757:-61.2285,0,-11.064 dDocent_Contig_1749 33 . T C 7502.84 . AB=0.418239;ABP=39.939;AC=4;AF=0.5;AN=8;AO=266;CIGAR=1X;DP=636;DPB=636;DPRA=0;EPP=580.622;EPPR=806.455;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=10519;QR=14728;RO=370;RPL=0;RPP=580.622;RPPR=806.455;RPR=266;RUN=1;SAF=266;SAP=580.622;SAR=0;SRF=370;SRP=806.455;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:217:133,84:133:5335:84:3326:-234.086,0,-414.65 0/1:200:117,83:117:4662:83:3283:-235.33,0,-359.305 0/1:136:66,70:66:2622:70:2774:-208.831,0,-195.172 0/1:83:54,29:54:2109:29:1136:-77.5266,0,-165.005 dDocent_Contig_1751 13 . T C 55.9209 . AB=0.128205;ABP=96.662;AC=1;AF=0.125;AN=8;AO=37;CIGAR=1X;DP=745;DPB=745;DPRA=0;EPP=83.3548;EPPR=1443.93;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=59.4893;NS=4;NUMALT=1;ODDS=0;PAIRED=0.027027;PAIREDR=0.947368;PAO=0;PQA=0;PQR=0;PRO=0;QA=1260;QR=27881;RO=703;RPL=0;RPP=83.3548;RPPR=1529.56;RPR=37;RUN=1;SAF=37;SAP=83.3548;SAR=0;SRF=693;SRP=1443.93;SRR=10;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:244:237,7:237:9392:7:238:0,-51.7011,-821.32 0/0:236:232,4:232:9146:4:134:0,-58.6519,-809.371 0/0:187:166,16:166:6628:16:555:0,-4.90256,-544.06 0/1:78:68,10:68:2715:10:333:-6.81394,0,-220.891 dDocent_Contig_1752 77 . T G 29672.6 . AB=0.878897;ABP=1042.98;AC=5;AF=0.625;AN=8;AO=1035;CIGAR=1X;DP=1166;DPB=1166;DPRA=0;EPP=2250.48;EPPR=285.302;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=5.55112e-17;PAIRED=0.958454;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=36879;QR=4694;RO=130;RPL=1035;RPP=2250.48;RPPR=285.302;RPR=0;RUN=1;SAF=1035;SAP=2250.48;SAR=0;SRF=130;SRP=285.302;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:332:30,302:30:1072:302:10793:-874.432,-3.15167,0 0/1:364:48,315:48:1752:315:11367:-913.498,0,-48.6075 0/1:234:23,211:23:838:211:7531:-607.344,0,-5.30168 0/1:236:29,207:29:1032:207:7188:-575.957,0,-22.1502 dDocent_Contig_1753 80 . A G 8268.58 . AB=0.85;ABP=258.375;AC=5;AF=0.625;AN=8;AO=288;CIGAR=1X;DP=324;DPB=324;DPRA=0;EPP=628.394;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=10024;QR=1238;RO=35;RPL=288;RPP=628.394;RPPR=79.0118;RPR=0;RUN=1;SAF=288;SAP=628.394;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:118:19,98:19:666:98:3467:-276.654,0,-24.6809 1/1:84:0,84:0:0:84:2936:-264.468,-25.2865,0 0/1:56:8,48:8:279:48:1657:-132.548,0,-8.58787 0/1:66:8,58:8:293:58:1964:-157.155,0,-6.85356 dDocent_Contig_1754 107 . N T 373.275 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=12;CIGAR=1X;DP=12;DPB=12;DPRA=0;EPP=29.068;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=404;QR=0;RO=0;RPL=0;RPP=29.068;RPPR=0;RPR=12;RUN=1;SAF=0;SAP=29.068;SAR=12;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:9:0,9:0:0:9:301:-27.4157,-2.70927,0 1/1:3:0,3:0:0:3:103:-9.60997,-0.90309,0 dDocent_Contig_1755 21 . A C 152.92 . AB=0.461538;ABP=3.17734;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=101;DPB=101;DPRA=0.443182;EPP=16.0391;EPPR=209.3;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=0.989474;PAO=0;PQA=0;PQR=0;PRO=0;QA=223;QR=3493;RO=95;RPL=0;RPP=16.0391;RPPR=209.3;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=95;SRP=209.3;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:59:59,0:59:2193:0:0:0,-17.7608,-197.611 0/1:13:7,6:7:263:6:223:-16.5138,0,-20.1163 0/0:11:11,0:11:403:0:0:0,-3.31133,-36.6132 0/0:18:18,0:18:634:0:0:0,-5.41854,-57.3774 dDocent_Contig_1756 36 . T C 16710.6 . AB=0.837736;ABP=265.562;AC=6;AF=0.75;AN=8;AO=508;CIGAR=1X;DP=569;DPB=569;DPRA=0;EPP=1106.12;EPPR=135.47;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=20189;QR=2377;RO=61;RPL=0;RPP=1106.12;RPPR=135.47;RPR=508;RUN=1;SAF=508;SAP=1106.12;SAR=0;SRF=61;SRP=135.47;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:167:8,159:8:317:159:6337:-541.177,-21.3765,0 0/1:142:31,111:31:1227:111:4416:-354.637,0,-67.9568 1/1:137:10,127:10:378:127:5037:-418.852,-6.87977,0 0/1:123:12,111:12:455:111:4399:-358.838,0,-4.25951 dDocent_Contig_1757 121 . C A 4630.12 . AB=0.829268;ABP=118.84;AC=5;AF=0.625;AN=8;AO=161;CIGAR=1X;DP=182;DPB=182;DPRA=0;EPP=352.617;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5582;QR=717;RO=21;RPL=0;RPP=352.617;RPPR=48.6112;RPR=161;RUN=1;SAF=0;SAP=352.617;SAR=161;SRF=0;SRP=48.6112;SRR=21;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:35:8,27:8:276:27:924:-72.9326,0,-14.64 1/1:59:0,59:0:0:59:2034:-183.33,-17.7608,0 0/1:39:4,35:4:139:35:1240:-100.164,0,-1.11252 0/1:49:9,40:9:302:40:1384:-110.102,0,-12.7557 dDocent_Contig_1758 98 . N C 188.368 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=6;CIGAR=2X;DP=6;DPB=10.5;DPRA=0;EPP=16.0391;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=4;PQA=137;PQR=0;PRO=0;QA=206;QR=0;RO=0;RPL=6;RPP=16.0391;RPPR=0;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:3:0,3:0:0:3:105:-9.44962,-0.90309,0 1|1:3:0,3:0:0:3:101:-9.08454,-0.90309,0 .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. dDocent_Contig_1759 38 . C T 908.729 . AB=0.265306;ABP=73.3394;AC=4;AF=0.5;AN=8;AO=39;CIGAR=1X;DP=147;DPB=147;DPRA=0;EPP=87.6977;EPPR=237.529;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1546;QR=4371;RO=108;RPL=0;RPP=87.6977;RPPR=237.529;RPR=39;RUN=1;SAF=39;SAP=87.6977;SAR=0;SRF=108;SRP=237.529;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:51:46,5:46:1862:5:186:-1.74557,0,-152.427 0/1:54:28,26:28:1130:26:1040:-77.6363,0,-85.7251 0/1:33:28,5:28:1135:5:202:-8.6275,0,-92.4953 0/1:9:6,3:6:244:3:118:-8.29231,0,-19.6296 dDocent_Contig_1760 7 . T A 261.644 . AB=0.163636;ABP=219.21;AC=2;AF=0.25;AN=8;AO=45;CIGAR=1X2M1X;DP=332;DPB=332;DPRA=0;EPP=100.727;EPPR=626.223;GTI=0;LEN=1;MEANALT=1;MQM=30.0444;MQMR=58.7143;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.860627;PAO=0;PQA=0;PQR=0;PRO=0;QA=1719;QR=11034;RO=287;RPL=0;RPP=100.727;RPPR=626.223;RPR=45;RUN=1;SAF=45;SAP=100.727;SAR=0;SRF=287;SRP=626.223;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:105:85,20:85:3269:20:757:-19.68,0,-259.006 0|1:115:99,16:99:3809:16:614:-8.92802,0,-300.677 0|0:71:67,4:67:2583:4:156:0,-9.22838,-220.518 0|0:41:36,5:36:1373:5:192:0,-1.492,-112.147 dDocent_Contig_1761 39 . T C 513.353 . AB=0.258824;ABP=45.9544;AC=2;AF=0.25;AN=8;AO=26;CIGAR=1X;DP=187;DPB=187;DPRA=4.86111;EPP=59.4686;EPPR=352.617;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.962733;PAO=0;PQA=0;PQR=0;PRO=0;QA=1036;QR=6408;RO=161;RPL=0;RPP=59.4686;RPPR=352.617;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=161;SRP=352.617;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:68:51,17:51:2033:17:672:-40.3347,0,-162.691 0/0:90:86,4:86:3437:4:162:0,-12.126,-294.403 0/0:12:12,0:12:464:0:0:0,-3.61236,-42.1035 0/1:17:12,5:12:474:5:202:-13.4444,0,-37.8911 dDocent_Contig_1763 12 . T C 102.645 . AB=0.112069;ABP=154.639;AC=2;AF=0.25;AN=8;AO=13;CIGAR=1X;DP=213;DPB=213;DPRA=1.19588;EPP=31.2394;EPPR=437.305;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=521;QR=7872;RO=200;RPL=0;RPP=31.2394;RPPR=437.305;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=200;SRP=437.305;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:90:80,10:80:3137:10:407:-9.8979,0,-255.332 0/0:66:66,0:66:2608:0:0:0,-19.868,-234.848 0/0:31:31,0:31:1217:0:0:0,-9.33193,-109.795 0/1:26:23,3:23:910:3:114:-2.8047,0,-74.3807 dDocent_Contig_1764 121 . C T 77.2971 . AB=0.148936;ABP=103.637;AC=1;AF=0.125;AN=8;AO=14;CIGAR=1M1X10M1X4M;DP=117;DPB=116.118;DPRA=1.36232;EPP=33.4109;EPPR=157.185;GTI=0;LEN=1;MEANALT=4.66667;MQM=24.6429;MQMR=50.7887;NS=4;NUMALT=5;ODDS=1.38778e-17;PAIRED=1;PAIREDR=0.929577;PAO=0;PQA=0;PQR=0;PRO=0;QA=345;QR=2663;RO=71;RPL=0;RPP=33.4109;RPPR=157.185;RPR=14;RUN=1;SAF=0;SAP=33.4109;SAR=14;SRF=0;SRP=157.185;SRR=71;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:43:25,6,0,8,0,1:25:936:6,0,8,0,1:150,0,173,0,6:-3.84958,-1.29765,-68.4587,-11.3753,-70.2649,-80.3264,0,-58.9046,-68.9588,-66.5506,-11.3753,-70.2649,-80.3264,-68.9588,-80.3264,-11.365,-70.2516,-80.3118,-68.9462,-80.3118,-80.0108 0|0:32:14,5,2,4,2,5:14:528:5,2,4,2,5:121,72,138,12,143:-6.19801,-2.39226,-44.1012,-4.52367,-39.7285,-47.1428,-0.0191455,-35.2341,-37.3693,-42.0445,-10.3979,-45.5882,-47.7227,-43.228,-52.9981,0,-35.2132,-37.346,-32.8506,-43.2057,-41.7195 0|0:23:19,0,0,1,0,1:19:711:0,0,1,0,1:0,0,36,0,39:0,-5.71957,-60.8754,-5.71957,-60.8754,-60.8754,-2.88708,-58.0672,-58.0672,-57.7662,-5.71957,-60.8754,-60.8754,-58.0672,-60.8754,-2.70822,-57.8939,-57.8939,-55.0856,-57.8939,-57.5929 0|1:19:13,3,0,0,0,1:13:488:3,0,0,0,1:74,0,0,0,6:-1.03867,0,-32.3374,-4.95206,-33.2405,-38.1741,-4.95206,-33.2405,-38.1741,-38.1741,-4.95206,-33.2405,-38.1741,-38.1741,-38.1741,-4.96655,-33.2373,-38.1674,-38.1674,-38.1674,-37.8663 dDocent_Contig_1765 25 . C T 8036.54 . AB=0.344548;ABP=183.943;AC=4;AF=0.5;AN=8;AO=297;CIGAR=1X;DP=862;DPB=862;DPRA=0;EPP=647.938;EPPR=1210.35;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=11844;QR=22211;RO=556;RPL=0;RPP=647.938;RPPR=1210.35;RPR=297;RUN=1;SAF=297;SAP=647.938;SAR=0;SRF=556;SRP=1210.35;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:263:149,114:149:5968:114:4568:-331.866,0,-457.723 0/1:299:203,87:203:8040:87:3450:-222.845,0,-635.478 0/1:188:130,58:130:5225:58:2305:-151.017,0,-413.499 0/1:112:74,38:74:2978:38:1521:-103.416,0,-234.389 dDocent_Contig_1766 40 . C T 125.566 . AB=0.142857;ABP=80.5629;AC=2;AF=0.25;AN=8;AO=11;CIGAR=1X;DP=143;DPB=143;DPRA=3.63889;EPP=26.8965;EPPR=289.645;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=432;QR=5220;RO=132;RPL=0;RPP=26.8965;RPPR=289.645;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=132;SRP=289.645;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:61:60,1:60:2364:1:40:0,-14.3671,-208.927 0/1:41:34,7:34:1362:7:279:-13.1389,0,-110.499 0/1:29:26,3:26:1017:3:113:-1.80854,0,-83.0824 0/0:12:12,0:12:477:0:0:0,-3.61236,-43.2763 dDocent_Contig_1767 107 . N T 1256.63 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=40;CIGAR=1X;DP=40;DPB=40;DPRA=0;EPP=89.8692;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1380;QR=0;RO=0;RPL=0;RPP=89.8692;RPPR=0;RPR=40;RUN=1;SAF=0;SAP=89.8692;SAR=40;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:31:0,31:0:0:31:1071:-96.6992,-9.33193,0 1/1:4:0,4:0:0:4:136:-12.5757,-1.20412,0 1/1:5:0,5:0:0:5:173:-15.9102,-1.50515,0 ./.:.:.:.:.:.:.:. dDocent_Contig_1768 7 . G T 13629.3 . AB=0.888889;ABP=85.7675;AC=7;AF=0.875;AN=8;AO=407;CIGAR=1X;DP=419;DPB=419;DPRA=0;EPP=886.8;EPPR=29.068;GTI=0;LEN=1;MEANALT=1;MQM=59.9558;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=15552;QR=421;RO=12;RPL=0;RPP=886.8;RPPR=29.068;RPR=407;RUN=1;SAF=407;SAP=886.8;SAR=0;SRF=12;SRP=29.068;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:153:0,153:0:0:153:5865:-527.702,-46.0576,0 1/1:161:5,156:5:187:156:5953:-518.535,-31.2745,0 1/1:42:0,42:0:0:42:1615:-145.615,-12.6433,0 0/1:63:7,56:7:234:56:2119:-171.972,0,-2.41583 dDocent_Contig_1769 79 . G A 351.2 . AB=0.209091;ABP=83.868;AC=2;AF=0.25;AN=8;AO=23;CIGAR=1X;DP=155;DPB=155;DPRA=2.44444;EPP=52.9542;EPPR=289.645;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=778;QR=4501;RO=132;RPL=23;RPP=52.9542;RPPR=289.645;RPR=0;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=132;SRP=289.645;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:23:23,0:23:803:0:0:0,-6.92369,-72.5911 0/1:95:76,19:76:2574:19:640:-29.3187,0,-203.317 0/0:22:22,0:22:747:0:0:0,-6.62266,-67.5463 0/1:15:11,4:11:377:4:138:-8.24495,0,-29.7452 dDocent_Contig_1770 11 . A C 234.193 . AB=0.0967213;ABP=864.708;AC=3;AF=0.375;AN=8;AO=62;CIGAR=1X;DP=728;DPB=728;DPRA=0;EPP=137.642;EPPR=1436.18;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.998485;PAO=0;PQA=0;PQR=0;PRO=0;QA=2447;QR=26088;RO=660;RPL=0;RPP=137.642;RPPR=1436.18;RPR=62;RUN=1;SAF=62;SAP=137.642;SAR=0;SRF=660;SRP=1436.18;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:186:166,16:166:6589:16:627:-1.58395,0,-537.573 0/1:228:205,23:205:8113:23:920:-14.4733,0,-661.135 0/1:196:176,20:176:6942:20:777:-11.2432,0,-565.49 0/0:118:113,3:113:4444:3:123:0,-23.8552,-388.467 dDocent_Contig_1771 35 . C A 71.9619 . AB=0.142857;ABP=41.7866;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=193;DPB=193;DPRA=0.664557;EPP=13.8677;EPPR=411.247;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=203;QR=7498;RO=188;RPL=0;RPP=13.8677;RPPR=411.247;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=188;SRP=411.247;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:35:30,5:30:1207:5:203:-8.11701,0,-98.3652 0/0:43:43,0:43:1722:0:0:0,-12.9443,-155.199 0/0:40:40,0:40:1582:0:0:0,-12.0412,-142.62 0/0:75:75,0:75:2987:0:0:0,-22.5772,-268.918 dDocent_Contig_1772 47 . T C 462.766 . AB=0.233333;ABP=58.6;AC=1;AF=0.125;AN=8;AO=21;CIGAR=1X;DP=248;DPB=248;DPRA=1.70886;EPP=48.6112;EPPR=495.935;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=822;QR=8913;RO=227;RPL=0;RPP=48.6112;RPPR=495.935;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=227;SRP=495.935;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:90:69,21:69:2676:21:822:-47.1974,0,-213.876 0/0:52:52,0:52:2036:0:0:0,-15.6536,-183.436 0/0:68:68,0:68:2688:0:0:0,-20.47,-242.053 0/0:38:38,0:38:1513:0:0:0,-11.4391,-136.415 dDocent_Contig_1774 62 . T G 1866.4 . AB=0.273649;ABP=134.737;AC=4;AF=0.5;AN=8;AO=81;CIGAR=1X;DP=296;DPB=296;DPRA=0;EPP=178.9;EPPR=465.534;GTI=0;LEN=1;MEANALT=1.5;MQM=56.6667;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.985915;PAO=0;PQA=0;PQR=0;PRO=0;QA=3112;QR=7353;RO=213;RPL=81;RPP=178.9;RPPR=465.534;RPR=0;RUN=1;SAF=0;SAP=178.9;SAR=81;SRF=213;SRP=465.534;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:83:58,24:58:1996:24:967:-62.4414,0,-155.136 0/1:97:64,33:64:2246:33:1205:-79.2827,0,-173.16 0/1:76:59,17:59:2032:17:665:-37.2214,0,-160.243 0/1:40:32,7:32:1079:7:275:-13.1839,0,-85.517 dDocent_Contig_1775 177 . A G 1365.32 . AB=0.554217;ABP=5.12945;AC=4;AF=0.5;AN=8;AO=46;CIGAR=1X;DP=83;DPB=83;DPRA=0;EPP=102.898;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.945946;PAO=0;PQA=0;PQR=0;PRO=0;QA=1840;QR=1467;RO=37;RPL=46;RPP=102.898;RPPR=83.3548;RPR=0;RUN=1;SAF=0;SAP=102.898;SAR=46;SRF=0;SRP=83.3548;SRR=37;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:5,18:5:175:18:730:-59.1003,0,-9.16309 0/1:13:6,7:6:245:7:286:-22.2014,0,-18.5161 0/1:26:17,9:17:682:9:355:-24.4845,0,-53.8803 0/1:21:9,12:9:365:12:469:-36.2356,0,-26.8932 dDocent_Contig_1776 17 . G T 139.617 . AB=0.115942;ABP=179.812;AC=3;AF=0.375;AN=8;AO=18;CIGAR=1X;DP=170;DPB=170;DPRA=0;EPP=42.0968;EPPR=333.074;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=729;QR=6038;RO=152;RPL=0;RPP=42.0968;RPPR=333.074;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=152;SRP=333.074;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:54:49,5:49:1968:5:205:-2.57939,0,-161.057 0/0:32:30,2:30:1191:2:81:0,-1.94723,-99.7766 0/1:65:57,8:57:2241:8:323:-9.87164,0,-182.303 0/1:19:16,3:16:638:3:120:-5.46774,0,-52.033 dDocent_Contig_1777 21 . G A 1556.23 . AB=0.6;ABP=10.3933;AC=4;AF=0.5;AN=8;AO=51;CIGAR=1X;DP=85;DPB=85;DPRA=0;EPP=113.755;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2059;QR=1373;RO=34;RPL=0;RPP=113.755;RPPR=76.8404;RPR=51;RUN=1;SAF=51;SAP=113.755;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:8,16:8:327:16:651:-51.6984,0,-22.5754 0/1:25:17,8:17:687:8:324:-22.0034,0,-54.6344 0/1:22:6,16:6:244:16:638:-51.1295,0,-15.7162 0/1:14:3,11:3:115:11:446:-36.2812,0,-6.50968 dDocent_Contig_1778 12 . C A 669.715 . AB=0.27;ABP=48.9587;AC=1;AF=0.125;AN=8;AO=29;CIGAR=1X;DP=311;DPB=311;DPRA=0.523416;EPP=65.983;EPPR=613.194;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1170;QR=11313;RO=281;RPL=0;RPP=65.983;RPPR=613.194;RPR=29;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=281;SRP=613.194;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:121:120,0:120:4831:0:0:0,-36.1236,-434.257 0/1:100:73,27:73:2932:27:1089:-68.1934,0,-233.86 0/0:48:47,1:47:1883:1:40:0,-10.4538,-165.674 0/0:42:41,1:41:1667:1:41:0,-8.54869,-146.152 dDocent_Contig_1779 12 . C T 523.961 . AB=0.220183;ABP=77.1392;AC=1;AF=0.125;AN=8;AO=26;CIGAR=1X;DP=237;DPB=237;DPRA=1.39394;EPP=59.4686;EPPR=461.191;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1036;QR=8448;RO=211;RPL=0;RPP=59.4686;RPPR=461.191;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=211;SRP=461.191;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:34:34,0:34:1341:0:0:0,-10.235,-120.936 0/0:65:65,0:65:2613:0:0:0,-19.5669,-235.288 0/1:109:85,24:85:3425:24:957:-53.6178,0,-275.466 0/0:29:27,2:27:1069:2:79:0,-1.23263,-89.005 dDocent_Contig_1780 51 . C T 4040.92 . AB=0.369727;ABP=62.416;AC=4;AF=0.5;AN=8;AO=149;CIGAR=1X;DP=403;DPB=403;DPRA=0;EPP=326.56;EPPR=554.564;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.992126;PAO=0;PQA=0;PQR=0;PRO=0;QA=5888;QR=10176;RO=254;RPL=149;RPP=326.56;RPPR=554.564;RPR=0;RUN=1;SAF=149;SAP=326.56;SAR=0;SRF=254;SRP=554.564;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:110:78,32:78:3141:32:1265:-80.9965,0,-249.642 0/1:108:69,39:69:2740:39:1508:-103.449,0,-214.201 0/1:113:72,41:72:2897:41:1620:-112.018,0,-226.802 0/1:72:35,37:35:1398:37:1495:-113.118,0,-104.403 dDocent_Contig_1783 30 . C T 134.217 . AB=0.114286;ABP=183.925;AC=1;AF=0.125;AN=8;AO=16;CIGAR=1X;DP=357;DPB=357;DPRA=1.93548;EPP=37.7539;EPPR=743.482;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=624;QR=13778;RO=341;RPL=0;RPP=37.7539;RPPR=743.482;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=341;SRP=743.482;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:140:124,16:124:5033:16:624:-14.3425,0,-410.665 0/0:130:130,0:130:5246:0:0:0,-39.1339,-471.969 0/0:60:60,0:60:2418:0:0:0,-18.0618,-217.755 0/0:27:27,0:27:1081:0:0:0,-8.12781,-97.5703 dDocent_Contig_1786 20 . T C 64.6286 . AB=0;ABP=0;AC=2;AF=0.5;AN=4;AO=2;CIGAR=1X;DP=3;DPB=3;DPRA=2;EPP=7.35324;EPPR=5.18177;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=68;QR=35;RO=1;RPL=0;RPP=7.35324;RPPR=5.18177;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=5.18177;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 0/0:1:1,0:1:35:0:0:0,-0.30103,-3.49863 1/1:2:0,2:0:0:2:68:-6.45793,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_1787 42 . G A 722.838 . AB=0.157143;ABP=288.9;AC=2;AF=0.25;AN=8;AO=54;CIGAR=1X;DP=602;DPB=602;DPRA=0;EPP=120.27;EPPR=1175.67;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2166;QR=21311;RO=548;RPL=0;RPP=120.27;RPPR=1175.67;RPR=54;RUN=1;SAF=54;SAP=120.27;SAR=0;SRF=548;SRP=1192.98;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:188:184,4:184:7140:4:160:0,-41.8102,-627.535 0/1:180:153,27:153:5942:27:1083:-43.5728,0,-480.428 0/0:134:128,6:128:4982:6:246:0,-17.8179,-425.793 0/1:100:83,17:83:3247:17:677:-31.1547,0,-262.203 dDocent_Contig_1788 55 . C T 79.5427 . AB=0.0960699;ABP=327.546;AC=2;AF=0.25;AN=8;AO=28;CIGAR=1X;DP=398;DPB=398;DPRA=0;EPP=63.8115;EPPR=804.284;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1103;QR=14715;RO=369;RPL=28;RPP=63.8115;RPPR=804.284;RPR=0;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=369;SRP=804.284;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:117:105,12:105:4194:12:486:-8.87113,0,-342.202 0/0:104:99,5:99:3946:5:204:0,-12.5631,-336.386 0/1:112:101,10:101:4044:10:373:-0.0872396,0,-330.116 0/0:65:64,1:64:2531:1:40:0,-15.5713,-223.94 dDocent_Contig_1789 13 . T A 52.6497 . AB=0.2;ABP=14.7363;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X;DP=187;DPB=187;DPRA=0.465812;EPP=22.5536;EPPR=389.532;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=355;QR=7197;RO=178;RPL=0;RPP=22.5536;RPPR=389.532;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=178;SRP=389.532;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:78:78,0:78:3156:0:0:0,-23.4803,-284.093 0/0:63:58,5:58:2347:5:199:0,-0.677446,-193.089 0/0:31:30,1:30:1203:1:38:0,-5.53466,-104.743 0/1:15:12,3:12:491:3:118:-6.48613,0,-40.0255 dDocent_Contig_1791 11 . T C 1383.61 . AB=0.652174;ABP=16.8888;AC=4;AF=0.5;AN=8;AO=45;CIGAR=1X;DP=69;DPB=69;DPRA=0;EPP=100.727;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.977778;PAIREDR=0.958333;PAO=0;PQA=0;PQR=0;PRO=0;QA=1805;QR=962;RO=24;RPL=0;RPP=100.727;RPPR=55.1256;RPR=45;RUN=1;SAF=45;SAP=100.727;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:33:15,18:15:602:18:723:-55.4601,0,-44.5821 0/1:10:2,8:2:82:8:325:-26.6093,0,-4.76938 0/1:15:6,9:6:237:9:364:-28.6095,0,-17.1866 0/1:11:1,10:1:41:10:393:-32.4123,0,-0.783237 dDocent_Contig_1792 45 . T A 4675.15 . AB=0.59375;ABP=22.5536;AC=4;AF=0.5;AN=8;AO=152;CIGAR=1X;DP=256;DPB=256;DPRA=0;EPP=333.074;EPPR=209.637;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.973684;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6099;QR=4153;RO=103;RPL=0;RPP=333.074;RPPR=209.637;RPR=152;RUN=1;SAF=152;SAP=333.074;SAR=0;SRF=103;SRP=226.672;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:70:22,48:22:877:48:1911:-151.116,0,-58.1679 0/1:102:43,58:43:1745:58:2337:-179.982,0,-126.755 0/1:41:19,22:19:765:22:889:-67.9741,0,-56.8256 0/1:43:19,24:19:766:24:962:-73.9328,0,-56.3144 dDocent_Contig_1793 11 . C T 74.847 . AB=0.103774;ABP=147.557;AC=1;AF=0.125;AN=8;AO=17;CIGAR=1X;DP=363;DPB=363;DPRA=1.42;EPP=39.9253;EPPR=754.34;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.99711;PAO=0;PQA=0;PQR=0;PRO=0;QA=684;QR=13722;RO=346;RPL=0;RPP=39.9253;RPPR=754.34;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=346;SRP=754.34;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:106:95,11:95:3795:11:444:-8.40552,0,-309.645 0/0:107:101,6:101:3982:6:240:0,-10.2348,-336.399 0/0:111:111,0:111:4390:0:0:0,-33.4143,-395.05 0/0:39:39,0:39:1555:0:0:0,-11.7402,-140.19 dDocent_Contig_1794 80 . C T 139.016 . AB=0.163636;ABP=57.0602;AC=1;AF=0.125;AN=8;AO=11;CIGAR=1X;DP=181;DPB=181;DPRA=1.2625;EPP=26.8965;EPPR=369.989;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=416;QR=6501;RO=169;RPL=11;RPP=26.8965;RPPR=369.989;RPR=0;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=169;SRP=369.989;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:46:44,2:44:1678:2:68:0,-7.39097,-144.822 0/1:55:46,9:46:1781:9:348:-15.1234,0,-143.982 0/0:57:57,0:57:2207:0:0:0,-17.1587,-198.849 0/0:23:22,0:22:835:0:0:0,-6.62266,-75.3801 dDocent_Contig_1795 35 . A T 5583.75 . AB=0.852459;ABP=134.651;AC=6;AF=0.75;AN=8;AO=169;CIGAR=1X1M1X;DP=187;DPB=187;DPRA=0;EPP=369.989;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6629;QR=695;RO=18;RPL=0;RPP=369.989;RPPR=42.0968;RPR=169;RUN=1;SAF=169;SAP=369.989;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:53:9,44:9:343:44:1713:-138.445,0,-15.2718 1|1:40:0,40:0:0:40:1583:-142.709,-12.0412,0 0|1:69:9,60:9:352:60:2365:-192.247,0,-11.2706 1|1:25:0,25:0:0:25:968:-87.4176,-7.52575,0 dDocent_Contig_1796 131 . A G 75.8819 . AB=0.151515;ABP=37.8197;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=189;DPB=189;DPRA=0.672566;EPP=18.2106;EPPR=398.218;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=273;QR=7181;RO=182;RPL=0;RPP=18.2106;RPPR=398.218;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=398.218;SRR=182;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:85:85,0:85:3320:0:0:0,-25.5875,-298.855 0/0:43:41,2:41:1628:2:69:0,-6.39372,-140.204 0/1:33:28,5:28:1128:5:204:-8.81004,0,-91.8685 0/0:28:28,0:28:1105:0:0:0,-8.42884,-99.7317 dDocent_Contig_1797 12 . A G 1813.66 . AB=0.589744;ABP=8.46682;AC=5;AF=0.625;AN=8;AO=57;CIGAR=3M1X3M;DP=89;DPB=89;DPRA=0;EPP=126.784;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1.75;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2277;QR=783;RO=20;RPL=0;RPP=126.784;RPPR=46.4397;RPR=57;RUN=1;SAF=57;SAP=126.784;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:11:0,0,0,11:0:0:0,0,11:0,0,442:-40.1352,-40.1352,-40.1352,-40.1352,-40.1352,-40.1352,-3.31133,-3.31133,-3.31133,0 0|1:43:13,8,0,22:13:509:8,0,22:319,0,884:-68.9314,-46.5741,-86.0154,-72.8447,-88.4237,-114.695,0,-15.5747,-41.8489,-35.2263 0|1:16:2,2,0,12:2:80:2,0,12:80,0,488:-39.6564,-33.6692,-39.6564,-40.2584,-40.2584,-46.8479,0,-3.47436e-08,-6.59016,-2.9778 0|1:19:5,0,2,12:5:194:0,2,12:0,77,463:-36.5099,-38.015,-53.9545,-31.693,-47.6325,-47.0305,0,-15.941,-9.61973,-12.3286 dDocent_Contig_1798 56 . A T 166.635 . AB=0.25;ABP=20.3821;AC=2;AF=0.25;AN=8;AO=10;CIGAR=1X;DP=99;DPB=99;DPRA=0.804598;EPP=24.725;EPPR=196.271;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=391;QR=3360;RO=89;RPL=10;RPP=24.725;RPPR=196.271;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=89;SRP=196.271;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:38:36,2:36:1369:2:80:0,-3.84735,-115.876 0/0:29:29,0:29:1063:0:0:0,-8.72987,-95.9512 0/1:19:16,3:16:611:3:116:-5.09721,0,-49.6068 0/1:13:8,5:8:317:5:195:-14.0099,0,-24.9834 dDocent_Contig_1799 10 . T C 7445.53 . AB=0.0443182;ABP=1590.17;AC=4;AF=0.5;AN=8;AO=39;CIGAR=3M1X;DP=880;DPB=880;DPRA=0;EPP=71.2168;EPPR=632.117;GTI=0;LEN=1;MEANALT=6.75;MQM=47.4359;MQMR=59.0565;NS=4;NUMALT=3;ODDS=0;PAIRED=0.179487;PAIREDR=0.354167;PAO=0;PQA=0;PQR=0;PRO=0;QA=1550;QR=12771;RO=336;RPL=0;RPP=87.6977;RPPR=732.625;RPR=39;RUN=1;SAF=37;SAP=71.2168;SAR=2;SRF=324;SRP=632.117;SRR=12;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:294:129,85,55,13:129:4906:85,55,13:3220,1588,507:-216.321,0,-376.809,-138.579,-285.818,-524.375,-217.68,-364.924,-503.46,-616.133 0|1:246:80,87,53,7:80:3049:87,53,7:3329,1626,283:-244.904,0,-222.685,-147.485,-127.375,-380.375,-246.488,-226.376,-373.833,-493.236 0|1:198:62,62,40,16:62:2348:62,40,16:2392,1244,644:-172.33,0,-173.609,-98.0757,-99.3548,-278.286,-139.819,-141.098,-239.155,-327.263 0|1:142:65,45,20,3:65:2468:45,20,3:1730,605,116:-116.487,0,-187.888,-90.7334,-156.112,-286.104,-126.758,-192.139,-282.83,-327.255 dDocent_Contig_1800 31 . C T 3456.28 . AB=0.674847;ABP=46.2932;AC=4;AF=0.5;AN=8;AO=110;CIGAR=1X;DP=163;DPB=163;DPRA=0;EPP=241.872;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4434;QR=2138;RO=53;RPL=0;RPP=241.872;RPPR=118.098;RPR=110;RUN=1;SAF=110;SAP=241.872;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:64:14,50:14:564:50:2018:-162.533,0,-31.8356 0/1:50:20,30:20:807:30:1210:-94.1189,0,-57.8949 0/1:24:10,14:10:405:14:566:-44.0568,0,-29.5857 0/1:25:9,16:9:362:16:640:-50.4097,0,-25.4177 dDocent_Contig_1801 39 . A T 59.1833 . AB=0.153846;ABP=30.0702;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=148;DPB=148;DPRA=0.639344;EPP=11.6962;EPPR=315.702;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.9375;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.5625;PAO=0;PQA=0;PQR=0;PRO=0;QA=162;QR=5704;RO=144;RPL=0;RPP=11.6962;RPPR=315.702;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=144;SRP=315.702;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:67:67,0:67:2651:0:0:0,-20.169,-238.687 0/0:40:40,0:40:1589:0:0:0,-12.0412,-143.244 0/1:26:22,4:22:860:4:162:-7.14018,0,-69.8776 0/0:15:15,0:15:604:0:0:0,-4.51545,-54.6959 dDocent_Contig_1802 24 . C T 255.225 . AB=0.123656;ABP=231.832;AC=2;AF=0.25;AN=8;AO=23;CIGAR=1X;DP=387;DPB=387;DPRA=0.925373;EPP=52.9542;EPPR=793.426;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=925;QR=14605;RO=364;RPL=0;RPP=52.9542;RPPR=793.426;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=364;SRP=793.426;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:160:160,0:160:6426:0:0:0,-48.1648,-578.065 0/1:115:101,14:101:4068:14:561:-16.2145,0,-331.466 0/1:71:62,9:62:2498:9:364:-11.7516,0,-203.58 0/0:41:41,0:41:1613:0:0:0,-12.3422,-145.402 dDocent_Contig_1803 14 . C T 2735.42 . AB=0.153846;ABP=584.798;AC=1;AF=0.125;AN=8;AO=86;CIGAR=1X3M1X1M2X3M;DP=559;DPB=592.182;DPRA=0;EPP=189.757;EPPR=198.443;GTI=0;LEN=1;MEANALT=4.75;MQM=40;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3317;QR=3540;RO=90;RPL=0;RPP=189.757;RPPR=198.443;RPR=86;RUN=1;SAF=86;SAP=189.757;SAR=0;SRF=90;SRP=198.443;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:194:30,81,51,21:30:1181:81,51,21:1379,908,808:-69.5664,0,-72.8124,-25.8888,-44.5716,-107.728,-16.5895,-35.1933,-61.0782,-107.46 0|1:192:37,79,21,50:37:1463:79,21,50:1231,372,1931:-136.851,-81.199,-177.842,-126.456,-180.123,-240.566,0,-53.6827,-98.9275,-105.409 0|0:116:16,71,17,9:16:626:71,17,9:1118,306,347:-56.2963,0,-30.1473,-43.2451,-33.7352,-89.629,-34.4936,-24.9031,-68.131,-83.2863 0|0:57:7,28,16,6:7:270:28,16,6:375,288,231:-16.2918,0,-13.7836,-1.58098,-5.51762,-18.974,-0.650355,-4.46356,-6.04137,-21.0498 dDocent_Contig_1804 13 . A T 8796.69 . AB=0.0414788;ABP=2028.2;AC=0;AF=0;AN=8;AO=46;CIGAR=1X1M1X4M;DP=1109;DPB=1109;DPRA=0;EPP=102.898;EPPR=919.372;GTI=0;LEN=1;MEANALT=4.5;MQM=17.0652;MQMR=59.872;NS=4;NUMALT=4;ODDS=0;PAIRED=0;PAIREDR=0.995261;PAO=0;PQA=0;PQR=0;PRO=0;QA=785;QR=16716;RO=422;RPL=0;RPP=102.898;RPPR=919.372;RPR=46;RUN=1;SAF=46;SAP=102.898;SAR=0;SRF=422;SRP=919.372;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:369:145,10,64,13,136:145:5739:10,64,13,136:181,2531,376,4178:-260.68,-293.733,-763.08,-146.125,-607.901,-599.231,-276.934,-738.697,-591.104,-745.38,0,-461.79,-314.205,-444.992,-431.443 0|0:344:145,22,22,26,128:145:5757:22,22,26,128:358,888,624,3483:-200.931,-224.802,-692.167,-181.471,-635.692,-648.848,-203.276,-657.49,-614.17,-669.442,0,-454.266,-410.938,-432.743,-435.503 0|0:234:77,4,25,15,113:77:3047:4,25,15,113:76,992,369,3649:-247.876,-266.497,-516.087,-201.529,-447.773,-444.806,-246.209,-492.444,-427.485,-492.488,0,-246.278,-181.319,-225.998,-216.817 0|0:162:55,10,10,4,83:55:2173:10,10,4,83:170,389,102,2621:-175.671,-182.616,-355.301,-166.701,-332.79,-339.393,-185.335,-351.42,-335.511,-359.829,0,-166.175,-150.253,-168.884,-150.787 dDocent_Contig_1806 7 . T C 6016.76 . AB=0.718412;ABP=117.785;AC=4;AF=0.5;AN=8;AO=199;CIGAR=1X;DP=277;DPB=277;DPRA=0;EPP=435.133;EPPR=172.385;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7662;QR=2987;RO=78;RPL=0;RPP=435.133;RPPR=172.385;RPR=199;RUN=1;SAF=199;SAP=435.133;SAR=0;SRF=78;SRP=172.385;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:76:12,64:12:464:64:2462:-198.903,0,-19.2328 0/1:87:42,45:42:1614:45:1732:-129.947,0,-119.332 0/1:62:13,49:13:493:49:1885:-151.233,0,-26.0501 0/1:52:11,41:11:416:41:1583:-127.083,0,-22.1358 dDocent_Contig_1807 43 . C A 43.1551 . AB=0.101124;ABP=126.003;AC=1;AF=0.125;AN=8;AO=17;CIGAR=1X;DP=288;DPB=288;DPRA=0;EPP=39.9253;EPPR=571.936;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=0.984733;PAO=0;PQA=0;PQR=0;PRO=0;QA=664;QR=10427;RO=262;RPL=0;RPP=39.9253;RPPR=571.936;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=262;SRP=571.936;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:81:74,3:74:2943:3:122:0,-12.208,-253.601 0/1:89:78,9:78:3091:9:353:-5.53734,0,-251.684 0/0:67:64,2:64:2555:2:82:0,-12.4912,-222.296 0/0:51:46,3:46:1838:3:107:0,-5.11251,-155.657 dDocent_Contig_1808 73 . G A 15366.6 . AB=0.82243;ABP=99.6307;AC=7;AF=0.875;AN=8;AO=536;CIGAR=1X;DP=562;DPB=562;DPRA=0;EPP=1166.92;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=17635;QR=784;RO=25;RPL=536;RPP=1166.92;RPPR=57.2971;RPR=0;RUN=1;SAF=536;SAP=1166.92;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:170:0,169:0:0:169:5602:-504.011,-50.8741,0 0/1:107:19,88:19:589:88:2873:-226.615,0,-21.0982 1/1:142:6,136:6:195:136:4489:-386.354,-24.8755,0 1/1:143:0,143:0:0:143:4671:-420.598,-43.0473,0 dDocent_Contig_1810 76 . G A 100.944 . AB=0.184211;ABP=35.9253;AC=1;AF=0.125;AN=8;AO=14;CIGAR=1X;DP=361;DPB=361;DPRA=0;EPP=33.4109;EPPR=756.511;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.997118;PAO=0;PQA=0;PQR=0;PRO=0;QA=496;QR=11698;RO=347;RPL=14;RPP=33.4109;RPPR=756.511;RPR=0;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=347;SRP=756.511;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:130:126,4:126:4267:4:144:0,-25.8203,-370.917 0/0:83:82,1:82:2789:1:31:0,-21.886,-248.161 0/0:110:108,2:108:3590:2:72:0,-26.2766,-316.48 0/1:38:31,7:31:1052:7:249:-11.3163,0,-83.5459 dDocent_Contig_1811 98 . N A 96.1165 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.586;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=103;QR=0;RO=0;RPL=3;RPP=9.52472;RPPR=0;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:103:-9.61002,-0.90309,0 dDocent_Contig_1812 118 . A G 199.465 . AB=0.244444;ABP=54.064;AC=2;AF=0.25;AN=8;AO=33;CIGAR=1X;DP=192;DPB=192;DPRA=0;EPP=74.6689;EPPR=348.274;GTI=0;LEN=1;MEANALT=1;MQM=29.0606;MQMR=48.6164;NS=4;NUMALT=1;ODDS=0;PAIRED=0.30303;PAIREDR=0.779874;PAO=0;PQA=0;PQR=0;PRO=0;QA=1135;QR=5627;RO=159;RPL=0;RPP=74.6689;RPPR=348.274;RPR=33;RUN=1;SAF=0;SAP=74.6689;SAR=33;SRF=0;SRP=348.274;SRR=159;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:80:70,10:70:2483:10:333:0,-8.75622,-179.085 0/1:64:49,15:49:1707:15:528:-18.2179,0,-110.709 0/1:26:19,7:19:683:7:238:-4.17206,0,-53.9156 0/0:22:21,1:21:754:1:36:0,-4.92799,-64.8348 dDocent_Contig_1814 51 . C T 106.37 . AB=0.135593;ABP=71.062;AC=1;AF=0.125;AN=8;AO=10;CIGAR=1X;DP=194;DPB=194;DPRA=1.08602;EPP=24.725;EPPR=402.561;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=406;QR=7236;RO=184;RPL=10;RPP=24.725;RPPR=402.561;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=184;SRP=402.561;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:61:61,0:61:2468:0:0:0,-18.3628,-222.252 0/1:59:51,8:51:1997:8:325:-11.8589,0,-162.164 0/0:42:40,2:40:1556:2:81:0,-4.95753,-132.595 0/0:32:32,0:32:1215:0:0:0,-9.63296,-109.609 dDocent_Contig_1815 19 . T A 944.938 . AB=0.162242;ABP=338.922;AC=3;AF=0.375;AN=8;AO=62;CIGAR=1X;DP=455;DPB=455;DPRA=0;EPP=137.642;EPPR=854.227;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2499;QR=15768;RO=392;RPL=0;RPP=137.642;RPPR=854.227;RPR=62;RUN=1;SAF=62;SAP=137.642;SAR=0;SRF=392;SRP=854.227;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:116:109,7:109:4361:7:284:0,-8.98548,-366.481 0/1:163:134,28:134:5410:28:1122:-52.3837,0,-437.842 0/1:105:92,13:92:3704:13:523:-15.8076,0,-301.752 0/1:71:57,14:57:2293:14:570:-30.2691,0,-185.149 dDocent_Contig_1816 55 . A G 43.7196 . AB=0.133333;ABP=38.0434;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=110;DPB=110;DPRA=1.125;EPP=11.6962;EPPR=233.186;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.933962;PAO=0;PQA=0;PQR=0;PRO=0;QA=155;QR=4187;RO=106;RPL=4;RPP=11.6962;RPPR=233.186;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=106;SRP=233.186;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:26,4:26:1021:4:155:-5.29276,0,-83.1484 0/0:15:15,0:15:595:0:0:0,-4.51545,-53.8874 0/0:32:32,0:32:1280:0:0:0,-9.63296,-115.468 0/0:33:33,0:33:1291:0:0:0,-9.93399,-116.454 dDocent_Contig_1817 16 . A G 2075.39 . AB=0.0431461;ABP=4036.67;AC=0;AF=0;AN=8;AO=134;CIGAR=3M1X3M;DP=3491;DPB=3452.14;DPRA=0;EPP=260.281;EPPR=4988.74;GTI=0;LEN=1;MEANALT=18.75;MQM=59.291;MQMR=58.5238;NS=4;NUMALT=3;ODDS=0;PAIRED=0.462687;PAIREDR=0.521775;PAO=0;PQA=0;PQR=0;PRO=0;QA=5325;QR=95284;RO=2434;RPL=0;RPP=293.988;RPPR=5288.37;RPR=134;RUN=1;SAF=130;SAP=260.281;SAR=4;SRF=2399;SRP=4988.74;SRR=35;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:1266:921,74,38,82:921:36129:74,38,82:2861,1487,3215:0,-43.1295,-2936.96,-155.218,-2837.2,-3059.88,-13.5858,-2695.57,-2807.66,-2905 0|0:1180:829,95,50,98:829:32393:95,50,98:3614,1996,3843:-65.4499,-20.8843,-2633.53,-150.613,-2497.74,-2776.81,0,-2347.12,-2476.86,-2611.74 0|0:644:443,58,21,53:443:17295:58,21,53:2276,847,2072:-52.4511,0,-1394.82,-116.566,-1343.04,-1522.53,-16.0989,-1242.57,-1359.14,-1412.42 0|0:401:241,35,25,52:241:9467:35,25,52:1300,995,2043:-93.6044,-61.2385,-815.408,-84.2282,-744.021,-841.413,0,-659.792,-682.786,-749.056 dDocent_Contig_1818 70 . A T 2553.47 . AB=0.212219;ABP=450.445;AC=3;AF=0.375;AN=8;AO=141;CIGAR=1X;DP=854;DPB=854;DPRA=0;EPP=309.188;EPPR=1551.27;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5304;QR=26190;RO=713;RPL=141;RPP=309.188;RPPR=1551.27;RPR=0;RUN=1;SAF=141;SAP=309.188;SAR=0;SRF=713;SRP=1551.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:265:214,51:214:7766:51:1924:-93.6327,0,-619.147 0/0:232:223,9:223:8437:9:351:0,-37.8871,-727.164 0/1:206:172,34:172:6219:34:1290:-54.3747,0,-497.758 0/1:151:104,47:104:3768:47:1739:-111.306,0,-293.838 dDocent_Contig_1819 37 . G C 252.591 . AB=0.117371;ABP=273.873;AC=1;AF=0.125;AN=8;AO=33;CIGAR=2X;DP=502;DPB=502;DPRA=2.77444;EPP=74.6689;EPPR=1021.43;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.993603;PAO=0;PQA=0;PQR=0;PRO=0;QA=1315;QR=18536;RO=469;RPL=0;RPP=74.6689;RPPR=1021.43;RPR=33;RUN=1;SAF=33;SAP=74.6689;SAR=0;SRF=469;SRP=1021.43;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:213:188,25:188:7458:25:1000:-26.1799,0,-606.758 0|0:156:148,8:148:5861:8:315:0,-18.2457,-498.596 0|0:73:73,0:73:2862:0:0:0,-21.9752,-257.703 0|0:60:60,0:60:2355:0:0:0,-18.0618,-212.108 dDocent_Contig_1821 27 . T G 10608.3 . AB=0.0641026;ABP=260.469;AC=0;AF=0;AN=8;AO=10;CIGAR=2M1D5M1X3M1X8M;DP=436;DPB=424.143;DPRA=1.75281;EPP=24.725;EPPR=76.8404;GTI=0;LEN=1;MEANALT=7;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=392;QR=1311;RO=34;RPL=0;RPP=24.725;RPPR=76.8404;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:156:5,13,10,112:5:194:13,10,112:490,392,4345:-379.122,-340.995,-353.021,-348.39,-324.698,-361.319,-23.688,0,-7.389,-5.9126 0|0:119:19,6,0,81:19:743:6,0,81:235,0,3163:-254.265,-240.77,-300.053,-259.984,-301.859,-321.073,0,-41.879,-61.0938,-36.7104 0|0:72:7,2,0,58:7:260:2,0,58:79,0,2264:-184.014,-179.667,-200.339,-186.121,-200.941,-207.395,0,-14.8235,-21.2823,-3.82257 0|0:89:3,2,0,74:3:114:2,0,74:68,0,2865:-247.391,-242.799,-251.546,-248.294,-252.148,-257.643,-12.9127,-16.7779,-22.2762,0 dDocent_Contig_1822 31 . G T 653.92 . AB=0.294737;ABP=37.7767;AC=4;AF=0.5;AN=8;AO=28;CIGAR=1X;DP=95;DPB=95;DPRA=0;EPP=63.8115;EPPR=148.499;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1089;QR=2622;RO=67;RPL=0;RPP=63.8115;RPPR=148.499;RPR=28;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=67;SRP=148.499;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:37:28,9:28:1103:9:344:-20.1746,0,-88.4231 0/1:13:11,2:11:410:2:80:-3.67819,0,-33.3212 0/1:17:8,9:8:317:9:355:-27.1952,0,-23.779 0/1:28:20,8:20:792:8:310:-19.8328,0,-63.1705 dDocent_Contig_1823 56 . A T 485.784 . AB=0.227723;ABP=68.047;AC=3;AF=0.375;AN=8;AO=25;CIGAR=1X;DP=143;DPB=143;DPRA=0;EPP=57.2971;EPPR=259.244;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=977;QR=4590;RO=118;RPL=25;RPP=57.2971;RPPR=259.244;RPR=0;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=118;SRP=259.244;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:35:32,3:32:1245:3:116:-0.279459,0,-101.792 0/1:43:28,15:28:1056:15:598:-41.2118,0,-82.3854 0/0:42:40,2:40:1581:2:81:0,-4.95753,-134.845 0/1:23:18,5:18:708:5:182:-9.80414,0,-57.1219 dDocent_Contig_1825 32 . T C 115.77 . AB=0.272727;ABP=12.8806;AC=1;AF=0.125;AN=8;AO=10;CIGAR=1X;DP=142;DPB=142;DPRA=2.64103;EPP=24.725;EPPR=289.645;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=356;QR=5043;RO=132;RPL=0;RPP=24.725;RPPR=289.645;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=132;SRP=289.645;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:29:29,0:29:1122:0:0:0,-8.72987,-101.276 0/0:81:77,4:77:2928:4:144:0,-11.0718,-250.361 0/0:10:10,0:10:395:0:0:0,-3.0103,-35.9085 0/1:22:16,6:16:598:6:212:-12.7989,0,-47.5255 dDocent_Contig_1826 18 . T A 14260.2 . AB=0.511628;ABP=4.12129;AC=4;AF=0.5;AN=8;AO=484;CIGAR=1X;DP=946;DPB=946;DPRA=0;EPP=1054;EPPR=1001.89;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=19069;QR=18248;RO=460;RPL=0;RPP=1054;RPPR=1001.89;RPR=484;RUN=1;SAF=484;SAP=1054;SAR=0;SRF=460;SRP=1001.89;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:312:121,191:121:4780:191:7518:-582.347,0,-336.199 0/1:263:127,136:127:5011:136:5382:-405.062,0,-371.72 0/1:213:112,100:112:4480:100:3924:-289.244,0,-339.223 0/1:158:100,57:100:3977:57:2245:-154.857,0,-310.562 dDocent_Contig_1827 17 . C A 121.249 . AB=0.123711;ABP=122.307;AC=2;AF=0.25;AN=8;AO=12;CIGAR=1X;DP=149;DPB=149;DPRA=1.86538;EPP=29.068;EPPR=300.502;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=478;QR=5518;RO=137;RPL=0;RPP=29.068;RPPR=300.502;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=137;SRP=300.502;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:39:33,6:33:1312:6:241:-10.3261,0,-106.602 0/1:58:52,6:52:2098:6:237:-4.24227,0,-171.532 0/0:37:37,0:37:1507:0:0:0,-11.1381,-135.864 0/0:15:15,0:15:601:0:0:0,-4.51545,-54.4282 dDocent_Contig_1828 86 . C T 104.824 . AB=0.26087;ABP=14.4341;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=123;DPB=123;DPRA=0.947917;EPP=12.7819;EPPR=252.73;GTI=0;LEN=1;MEANALT=1;MQM=54.75;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=0.982609;PAO=0;PQA=0;PQR=0;PRO=0;QA=274;QR=3898;RO=115;RPL=8;RPP=20.3821;RPPR=252.73;RPR=0;RUN=1;SAF=7;SAP=12.7819;SAR=1;SRF=115;SRP=252.73;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:17,6:17:583:6:200:-11.4032,0,-45.8703 0/0:45:44,1:44:1482:1:40:0,-11.749,-131.869 0/0:32:32,0:32:1083:0:0:0,-9.63296,-97.7718 0/0:23:22,1:22:750:1:34:0,-3.52478,-64.4172 dDocent_Contig_1829 66 . T A 431.253 . AB=0.161491;ABP=163.254;AC=1;AF=0.125;AN=8;AO=30;CIGAR=1X;DP=454;DPB=454;DPRA=0.79602;EPP=68.1545;EPPR=923.715;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1188;QR=16737;RO=424;RPL=30;RPP=68.1545;RPPR=923.715;RPR=0;RUN=1;SAF=30;SAP=68.1545;SAR=0;SRF=424;SRP=923.715;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:134:134,0:134:5267:0:0:0,-40.338,-473.891 0/1:161:135,26:135:5327:26:1028:-44.3471,0,-430.835 0/0:86:85,1:85:3366:1:38:0,-22.0913,-299.191 0/0:73:70,3:70:2777:3:122:0,-10.6027,-238.678 dDocent_Contig_1830 36 . T C 3769.32 . AB=0.568182;ABP=11.8936;AC=4;AF=0.5;AN=8;AO=125;CIGAR=1X;DP=220;DPB=220;DPRA=0;EPP=257.351;EPPR=209.3;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.832;PAIREDR=0.968421;PAO=0;PQA=0;PQR=0;PRO=0;QA=4973;QR=3793;RO=95;RPL=0;RPP=274.444;RPPR=209.3;RPR=125;RUN=1;SAF=123;SAP=257.351;SAR=2;SRF=95;SRP=209.3;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:79:40,39:40:1594:39:1536:-114.696,0,-119.919 0/1:88:34,54:34:1358:54:2157:-167.81,0,-95.9847 0/1:33:16,17:16:645:17:680:-51.5958,0,-48.4504 0/1:20:5,15:5:196:15:600:-48.3185,0,-11.9939 dDocent_Contig_1831 107 . N C 164.944 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=6;CIGAR=1X;DP=6;DPB=6;DPRA=0;EPP=16.0391;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=7.66544;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=180;QR=0;RO=0;RPL=0;RPP=16.0391;RPPR=0;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:6:0,6:0:0:6:180:-16.4942,-1.80618,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_1832 7 . T A 1082.13 . AB=0.05;ABP=882.457;AC=1;AF=0.125;AN=8;AO=25;CIGAR=2X;DP=500;DPB=500;DPRA=0;EPP=57.2971;EPPR=871.599;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.96;PAIREDR=0.8975;PAO=0;PQA=0;PQR=0;PRO=0;QA=955;QR=15223;RO=400;RPL=0;RPP=57.2971;RPPR=871.599;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=400;SRP=871.599;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:161:130,15,13:130:4966:15,13:574,484:-7.97235,0,-402.943,-7.49894,-367.848,-411.037 0|0:194:168,3,23:168:6391:3,23:117,891:-22.6232,-63.5783,-586.841,0,-514.544,-517.239 0|0:98:74,4,20:74:2800:4,20:148,769:-40.8692,-51.0405,-279.368,0,-217.437,-223.523 0|0:47:28,3,16:28:1066:3,16:116,617:-42.238,-41.1384,-127.669,0,-77.903,-82.6154 dDocent_Contig_1833 21 . G T 545.01 . AB=0.1;ABP=128.087;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X2M1X4M;DP=150;DPB=156.375;DPRA=0;EPP=22.5536;EPPR=241.872;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=346;QR=4323;RO=110;RPL=0;RPP=22.5536;RPPR=241.872;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=110;SRP=241.872;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:41:34,7,0,0:34:1326:7,0,0:266,0,0:-11.9532,0,-107.273,-22.1882,-109.38,-131.187,-22.1882,-109.38,-131.187,-131.187 0|0:49:40,2,4,3:40:1558:2,4,3:80,152,120:-0.268329,-5.71627,-133.161,0,-121.444,-126.831,-2.43661,-123.895,-118.167,-129.582 0|0:35:18,0,6,11:18:719:0,6,11:0,235,427:-29.6202,-35.0388,-94.2709,-17.4032,-76.6317,-74.8256,0,-59.2503,-41.6149,-55.939 0|0:25:18,0,7,0:18:720:0,7,0:0,273,0:-16.8882,-22.3067,-81.6306,0,-59.7104,-57.6032,-22.3067,-81.6306,-59.7104,-81.6306 dDocent_Contig_1834 7 . T C 94.0789 . AB=0.148936;ABP=53.3238;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X;DP=258;DPB=258;DPRA=0.643939;EPP=22.5536;EPPR=543.707;GTI=0;LEN=1;MEANALT=1;MQM=59.4444;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.111111;PAIREDR=0.951807;PAO=0;PQA=0;PQR=0;PRO=0;QA=346;QR=9528;RO=249;RPL=0;RPP=22.5536;RPPR=543.707;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=249;SRP=543.707;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:47:40,7:40:1543:7:268:-10.3287,0,-124.993 0/0:88:88,0:88:3385:0:0:0,-26.4906,-304.788 0/0:61:60,1:60:2298:1:39:0,-14.4663,-203.142 0/0:62:61,1:61:2302:1:39:0,-14.7673,-203.504 dDocent_Contig_1835 13 . A G 345.316 . AB=0.149351;ABP=167.478;AC=1;AF=0.125;AN=8;AO=28;CIGAR=1X;DP=508;DPB=508;DPRA=0.953846;EPP=63.8115;EPPR=1045.32;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1107;QR=19051;RO=480;RPL=0;RPP=63.8115;RPPR=1045.32;RPR=28;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=480;SRP=1045.32;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:194:194,0:194:7718:0:0:0,-58.3998,-694.224 0/1:154:131,23:131:5168:23:909:-35.7535,0,-418.636 0/0:94:89,5:89:3504:5:198:0,-10.0999,-297.2 0/0:66:66,0:66:2661:0:0:0,-19.868,-239.606 dDocent_Contig_1836 1 . N G 293.866 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=8;CIGAR=1X;DP=8;DPB=8;DPRA=0;EPP=20.3821;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=44.75;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=0.5;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=318;QR=0;RO=0;RPL=0;RPP=20.3821;RPPR=0;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:4:0,4:0:0:4:159:-14.2418,-1.20412,0 1/1:3:0,3:0:0:3:120:-10.862,-0.90309,0 1/1:1:0,1:0:0:1:39:-3.80269,-0.30103,0 dDocent_Contig_1837 179 . A T 37.3024 . AB=0.133333;ABP=38.0434;AC=2;AF=0.25;AN=8;AO=4;CIGAR=1X;DP=60;DPB=60;DPRA=1;EPP=11.6962;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.928571;PAO=0;PQA=0;PQR=0;PRO=0;QA=161;QR=2176;RO=56;RPL=4;RPP=11.6962;RPPR=124.613;RPR=0;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=124.613;SRR=56;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:23:23,0:23:892:0:0:0,-6.92369,-80.5935 0/1:21:19,2:19:740:2:81:-1.3641,0,-60.6042 0/1:9:7,2:7:274:2:80:-4.88252,0,-22.3187 0/0:7:7,0:7:270:0:0:0,-2.10721,-24.6648 dDocent_Contig_1838 158 . A T 355.605 . AB=0.2;ABP=81.1833;AC=2;AF=0.25;AN=8;AO=26;CIGAR=1X;DP=203;DPB=203;DPRA=0;EPP=59.4686;EPPR=220.023;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=963;QR=6274;RO=177;RPL=0;RPP=59.4686;RPPR=220.023;RPR=26;RUN=1;SAF=0;SAP=59.4686;SAR=26;SRF=0;SRP=387.361;SRR=177;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:63:60,3:60:2163:3:110:0,-8.70408,-184.665 0/1:71:56,15:56:1993:15:565:-29.8158,0,-158.263 0/0:40:37,3:37:1265:3:104:0,-2.33823,-104.432 0/1:29:24,5:24:853:5:184:-8.18837,0,-68.3531 dDocent_Contig_1839 43 . G A 1299.42 . AB=0.366412;ABP=23.3161;AC=3;AF=0.375;AN=8;AO=48;CIGAR=1X;DP=206;DPB=206;DPRA=0.582222;EPP=107.241;EPPR=346.103;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1915;QR=6233;RO=158;RPL=0;RPP=107.241;RPPR=346.103;RPR=48;RUN=1;SAF=48;SAP=107.241;SAR=0;SRF=158;SRP=346.103;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:55:35,20:35:1367:20:794:-55.2196,0,-106.719 0/0:75:75,0:75:2958:0:0:0,-22.5772,-266.319 0/1:38:20,18:20:783:18:732:-54.765,0,-59.3484 0/1:38:28,10:28:1125:10:389:-23.9243,0,-90.0961 dDocent_Contig_1840 37 . C T 1702.09 . AB=0.6;ABP=11.2619;AC=4;AF=0.5;AN=8;AO=57;CIGAR=1X;DP=95;DPB=95;DPRA=0;EPP=126.784;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.964912;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2241;QR=1526;RO=38;RPL=0;RPP=126.784;RPPR=85.5263;RPR=57;RUN=1;SAF=57;SAP=126.784;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:2,23:2:82:23:921:-75.6649,0,-0.253928 0/1:29:14,15:14:570:15:599:-45.5191,0,-42.9123 0/1:22:11,11:11:434:11:412:-30.7924,0,-32.7867 0/1:19:11,8:11:440:8:309:-22.4478,0,-34.2354 dDocent_Contig_1841 13 . T C 1438.79 . AB=0.211538;ABP=228.509;AC=2;AF=0.25;AN=8;AO=66;CIGAR=1X;DP=593;DPB=593;DPRA=1.11032;EPP=146.327;EPPR=1147.38;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.998102;PAO=0;PQA=0;PQR=0;PRO=0;QA=2664;QR=21152;RO=527;RPL=0;RPP=146.327;RPPR=1147.38;RPR=66;RUN=1;SAF=66;SAP=146.327;SAR=0;SRF=527;SRP=1147.38;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:193:193,0:193:7766:0:0:0,-58.0988,-698.513 0/1:246:187,59:187:7473:59:2401:-142.169,0,-598.127 0/0:88:88,0:88:3529:0:0:0,-26.4906,-317.632 0/1:66:59,7:59:2384:7:263:-4.15279,0,-194.835 dDocent_Contig_1842 16 . G A 11352.4 . AB=0.466042;ABP=11.564;AC=4;AF=0.5;AN=8;AO=398;CIGAR=1X1M1X;DP=854;DPB=854;DPRA=0;EPP=867.256;EPPR=991.03;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.997802;PAO=0;PQA=0;PQR=0;PRO=0;QA=15530;QR=18019;RO=455;RPL=0;RPP=867.256;RPPR=991.03;RPR=398;RUN=1;SAF=398;SAP=867.256;SAR=0;SRF=455;SRP=991.03;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:304:156,147:156:6119:147:5699:-421.206,0,-458.895 0|1:273:146,127:146:5804:127:4986:-366.509,0,-440.001 0|1:170:90,80:90:3600:80:3124:-230.097,0,-272.86 0|1:107:63,44:63:2496:44:1721:-122.92,0,-192.574 dDocent_Contig_1843 28 . G A 121.988 . AB=0.16;ABP=53.2147;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=119;DPB=119;DPRA=2.17391;EPP=20.3821;EPPR=244.044;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=309;QR=4424;RO=111;RPL=0;RPP=20.3821;RPPR=244.044;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=111;SRP=244.044;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:50:42,8:42:1675:8:309:-13.1196,0,-135.927 0/0:48:48,0:48:1905:0:0:0,-14.4494,-171.654 0/0:10:10,0:10:399:0:0:0,-3.0103,-36.2685 0/0:11:11,0:11:445:0:0:0,-3.31133,-40.4046 dDocent_Contig_1844 21 . C G 1077.08 . AB=0.08;ABP=41.3151;AC=0;AF=0;AN=8;AO=2;CIGAR=1X3M1X;DP=103;DPB=103;DPRA=0;EPP=7.35324;EPPR=105.701;GTI=0;LEN=1;MEANALT=3;MQM=56.5;MQMR=55.1091;NS=4;NUMALT=3;ODDS=1.38778e-17;PAIRED=0;PAIREDR=0.454545;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=2164;RO=55;RPL=0;RPP=7.35324;RPPR=122.441;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=53;SRP=105.701;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:25:11,2,1,11:11:435:2,1,11:81,41,448:-33.6475,-30.2953,-58.6223,-33.5745,-55.8384,-62.2044,0,-22.2312,-25.516,-25.5939 0|0:36:24,0,3,9:24:942:0,3,9:0,114,356:-22.0839,-29.3086,-102.808,-19.9646,-93.4604,-92.5573,0,-73.5062,-64.1576,-70.7969 0|0:23:7,0,1,14:7:274:0,1,14:0,41,574:-45.2699,-47.3771,-67.1012,-43.993,-63.7162,-63.4152,0,-19.6944,-16.3042,-15.48 0|0:19:13,0,1,5:13:513:0,1,5:0,40,196:-12.1963,-16.1097,-58.3199,-12.8133,-55.0245,-54.7235,0,-42.2044,-38.909,-40.6993 dDocent_Contig_1845 24 . G A 4835.24 . AB=0.335394;ABP=155.279;AC=4;AF=0.5;AN=8;AO=217;CIGAR=1X;DP=647;DPB=647;DPRA=0;EPP=474.22;EPPR=936.743;GTI=0;LEN=1;MEANALT=1;MQM=59.9908;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7586;QR=17118;RO=430;RPL=0;RPP=474.22;RPPR=936.743;RPR=217;RUN=1;SAF=217;SAP=474.22;SAR=0;SRF=430;SRP=936.743;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:207:153,54:153:6076:54:1808:-100.682,0,-484.29 0/1:187:117,70:117:4693:70:2508:-169.66,0,-365.978 0/1:156:83,73:83:3290:73:2589:-186.274,0,-249.199 0/1:97:77,20:77:3059:20:681:-32.3971,0,-246.195 dDocent_Contig_1846 31 . C A 8075.5 . AB=0.890459;ABP=377.77;AC=4;AF=0.5;AN=8;AO=252;CIGAR=1X;DP=283;DPB=283;DPRA=0;EPP=550.221;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=0.928571;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=9973;QR=1240;RO=31;RPL=0;RPP=550.221;RPPR=70.3259;RPR=252;RUN=1;SAF=252;SAP=550.221;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:81:9,72:9:360:72:2851:-232.304,0,-8.37924 0/1:72:10,62:10:408:62:2459:-199.781,0,-15.4062 0/1:101:9,92:9:352:92:3638:-297.051,0,-1.63355 0/1:29:3,26:3:120:26:1025:-83.8161,0,-2.45782 dDocent_Contig_1847 14 . C T 97.0676 . AB=0.114754;ABP=317.553;AC=2;AF=0.25;AN=8;AO=38;CIGAR=1X;DP=409;DPB=409;DPRA=0;EPP=85.5263;EPPR=808.627;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.0161725;PAO=0;PQA=0;PQR=0;PRO=0;QA=1303;QR=14527;RO=371;RPL=0;RPP=85.5263;RPPR=808.627;RPR=38;RUN=1;SAF=38;SAP=85.5263;SAR=0;SRF=371;SRP=808.627;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:135:120,15:120:4719:15:489:-3.67792,0,-384.006 0/1:109:96,13:96:3756:13:455:-8.47039,0,-305.237 0/0:130:123,7:123:4775:7:250:0,-16.2878,-406.826 0/0:35:32,3:32:1277:3:109:0,-0.368308,-105.032 dDocent_Contig_1848 56 . T C 3649.5 . AB=0.0526316;ABP=630.566;AC=0;AF=0;AN=8;AO=19;CIGAR=1X3M1X;DP=511;DPB=511;DPRA=0;EPP=44.2683;EPPR=745.654;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=729;QR=13347;RO=342;RPL=19;RPP=44.2683;RPPR=745.654;RPR=0;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=342;SRP=745.654;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:174:103,11,58:103:4041:11,58:442,2282:-156.709,-151.289,-480.3,0,-295.915,-314.88 0|0:150:119,0,29:119:4637:0,29:0,1155:-59.3411,-95.1637,-476.259,0,-381.153,-372.423 0|0:115:77,5,32:77:3013:5,32:192,1288:-83.0314,-90.4549,-336.672,0,-232.02,-238.144 0|0:72:43,3,26:43:1656:3,26:95,1024:-71.3581,-76.6713,-211.716,0,-128.382,-128.19 dDocent_Contig_1849 18 . C T 1876.21 . AB=0.1917;ABP=420.757;AC=4;AF=0.5;AN=8;AO=97;CIGAR=1X;DP=506;DPB=506;DPRA=0;EPP=213.643;EPPR=888.971;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3824;QR=16274;RO=408;RPL=0;RPP=213.643;RPPR=888.971;RPR=97;RUN=1;SAF=97;SAP=213.643;SAR=0;SRF=408;SRP=888.971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:214:179,34:179:7091:34:1340:-56.5521,0,-573.547 0/1:152:116,36:116:4638:36:1449:-84.8952,0,-371.575 0/1:92:72,20:72:2902:20:775:-42.3671,0,-233.578 0/1:48:41,7:41:1643:7:260:-9.29565,0,-133.646 dDocent_Contig_1850 15 . T C 933.412 . AB=0.155508;ABP=480.27;AC=4;AF=0.5;AN=8;AO=72;CIGAR=1X;DP=463;DPB=463;DPRA=0;EPP=159.356;EPPR=849.885;GTI=0;LEN=1;MEANALT=1.25;MQM=51.2639;MQMR=59.7923;NS=4;NUMALT=1;ODDS=2.77556e-17;PAIRED=0.861111;PAIREDR=0.85641;PAO=0;PQA=0;PQR=0;PRO=0;QA=2878;QR=15506;RO=390;RPL=0;RPP=159.356;RPPR=849.885;RPR=72;RUN=1;SAF=72;SAP=159.356;SAR=0;SRF=390;SRP=849.885;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:126:108,17:108:4277:17:670:-15.2379,0,-346.957 0/1:157:133,24:133:5305:24:964:-27.951,0,-428.639 0/1:96:82,14:82:3265:14:563:-19.4705,0,-264.391 0/1:84:67,17:67:2659:17:681:-36.1711,0,-214.143 dDocent_Contig_1851 14 . A T 1196.73 . AB=0.0612245;ABP=166.89;AC=4;AF=0.5;AN=8;AO=6;CIGAR=1M1X4M;DP=235;DPB=239;DPRA=0;EPP=16.0391;EPPR=309.188;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=4;NUMALT=4;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=236;QR=5560;RO=141;RPL=0;RPP=16.0391;RPPR=309.188;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=141;SRP=309.188;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:72:59,6,7,0,0:59:2294:6,7,0,0:238,275,0,0:-4.85569,-3.02262,-189.711,0,-168.898,-186.384,-22.6165,-191.517,-188.491,-211.11,-22.6165,-191.517,-188.491,-211.11,-211.11 0|1:64:41,8,13,0,2:41:1628:8,13,0,2:322,521,0,78:-30.5829,-16.3855,-147.998,0,-107.481,-130.107,-42.9251,-150.407,-134.02,-176.946,-36.515,-143.996,-127.61,-170.535,-169.933 0|1:65:27,12,22,4,0:27:1078:12,22,4,0:473,882,149,0:-64.5447,-33.7594,-118.935,0,-49.8801,-82.1708,-60.4793,-110.354,-76.5999,-148.062,-72.6725,-122.548,-88.7934,-149.266,-161.461 0|1:34:14,9,7,0,4:14:560:9,7,0,4:357,264,0,158:-25.1787,0,-43.4302,-7.76566,-24.5115,-51.7908,-29.3931,-46.1395,-53.898,-75.5277,-16.3911,-33.1384,-40.8979,-62.5269,-61.3228 dDocent_Contig_1852 11 . A G 795.77 . AB=0.205405;ABP=142.466;AC=2;AF=0.25;AN=8;AO=42;CIGAR=1X;DP=333;DPB=333;DPRA=1.08974;EPP=94.2121;EPPR=634.909;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1682;QR=11621;RO=291;RPL=0;RPP=94.2121;RPPR=634.909;RPR=42;RUN=1;SAF=42;SAP=94.2121;SAR=0;SRF=291;SRP=634.909;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:117:91,26:91:3636:26:1045:-59.121,0,-292.038 0/1:68:56,12:56:2257:12:478:-22.8996,0,-182.82 0/0:78:78,0:78:3131:0:0:0,-23.4803,-281.861 0/0:70:66,4:66:2597:4:159:0,-6.38127,-219.18 dDocent_Contig_1853 9 . C A 1776.55 . AB=0.380117;ABP=24.3568;AC=4;AF=0.5;AN=8;AO=65;CIGAR=2X1M1X3M2X1M1X;DP=171;DPB=171;DPRA=0;EPP=144.156;EPPR=209.3;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2564;QR=3644;RO=95;RPL=0;RPP=144.156;RPPR=209.3;RPR=65;RUN=1;SAF=65;SAP=144.156;SAR=0;SRF=95;SRP=209.3;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:37:19,0,18:19:733:0,18:0,709:-53.0004,-58.7199,-118.911,0,-60.581,-55.1625 0|1:76:43,10,23:43:1637:10,23:390,917:-62.581,-43.4712,-174.722,0,-102.207,-127.342 0|1:31:19,0,12:19:736:0,12:0,472:-33.4998,-39.2194,-99.6799,0,-60.8511,-57.2388 0|1:27:14,1,12:14:538:1,12:40,466:-34.0636,-34.9821,-78.8448,0,-40.8553,-40.539 dDocent_Contig_1854 38 . G A 76.0491 . AB=0.125;ABP=90.9549;AC=1;AF=0.125;AN=8;AO=11;CIGAR=1X;DP=309;DPB=309;DPRA=0.878431;EPP=26.8965;EPPR=650.109;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.993289;PAO=0;PQA=0;PQR=0;PRO=0;QA=408;QR=11632;RO=298;RPL=0;RPP=26.8965;RPPR=650.109;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=298;SRP=650.109;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:85:85,0:85:3332:0:0:0,-25.5875,-299.951 0/0:94:93,1:93:3644:1:35:0,-24.7982,-324.506 0/1:72:63,9:63:2436:9:335:-8.82676,0,-197.719 0/0:58:57,1:57:2220:1:38:0,-13.6625,-196.167 dDocent_Contig_1855 36 . G T 8128.57 . AB=0.791277;ABP=239.565;AC=4;AF=0.5;AN=8;AO=254;CIGAR=1X;DP=321;DPB=321;DPRA=0;EPP=554.564;EPPR=148.499;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.992126;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=10160;QR=2695;RO=67;RPL=0;RPP=554.564;RPPR=148.499;RPR=254;RUN=1;SAF=254;SAP=554.564;SAR=0;SRF=67;SRP=148.499;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:148:35,113:35:1407:113:4513:-361.546,0,-82.3288 0/1:67:10,57:10:401:57:2290:-186.09,0,-16.2785 0/1:51:17,34:17:686:34:1361:-107.397,0,-46.7174 0/1:55:5,50:5:201:50:1996:-163.272,0,-1.91387 dDocent_Contig_1856 52 . G A 1536.15 . AB=0.376623;ABP=23.3714;AC=4;AF=0.5;AN=8;AO=58;CIGAR=1X;DP=154;DPB=154;DPRA=0;EPP=128.956;EPPR=211.472;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.989583;PAO=0;PQA=0;PQR=0;PRO=0;QA=2268;QR=3637;RO=96;RPL=58;RPP=128.956;RPPR=211.472;RPR=0;RUN=1;SAF=58;SAP=128.956;SAR=0;SRF=96;SRP=211.472;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:61:42,19:42:1600:19:755:-49.91,0,-125.874 0/1:38:24,14:24:912:14:553:-38.6714,0,-70.9448 0/1:39:22,17:22:815:17:639:-46.0822,0,-61.9098 0/1:16:8,8:8:310:8:321:-24.4411,0,-23.4392 dDocent_Contig_1857 37 . T A 7356.53 . AB=0.713147;ABP=102.059;AC=5;AF=0.625;AN=8;AO=230;CIGAR=1X;DP=302;DPB=302;DPRA=0;EPP=502.449;EPPR=159.356;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=9050;QR=2862;RO=72;RPL=0;RPP=502.449;RPPR=159.356;RPR=230;RUN=1;SAF=230;SAP=502.449;SAR=0;SRF=72;SRP=159.356;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:127:46,81:46:1822:81:3226:-252.176,0,-125.964 1/1:51:0,51:0:0:51:1996:-179.838,-15.3525,0 0/1:63:6,57:6:241:57:2241:-182.889,0,-3.1012 0/1:61:20,41:20:799:41:1587:-124.714,0,-53.8651 dDocent_Contig_1858 33 . C T 66.5111 . AB=0.181818;ABP=22.3561;AC=1;AF=0.125;AN=8;AO=4;CIGAR=18M1X3M;DP=94;DPB=94.1364;DPRA=1.1;EPP=11.6962;EPPR=189.757;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=156;QR=3384;RO=86;RPL=0;RPP=11.6962;RPPR=189.757;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=86;SRP=189.757;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:32:28,3,0:28:1097:3,0:119,0:-1.43156,0,-89.3803,-9.8604,-90.2834,-100.08 0|0:24:24,0,0:24:939:0,0:0,0:0,-7.22472,-84.8216,-7.22472,-84.8216,-84.8216 0|1:22:18,0,4:18:716:0,4:0,156:-7.79284,-13.2114,-72.1722,0,-59.3518,-58.1477 0|0:16:16,0,0:16:632:0,0:0,0:0,-4.81648,-57.2173,-4.81648,-57.2173,-57.2173 dDocent_Contig_1859 13 . G C 86.8966 . AB=0.181818;ABP=51.3749;AC=2;AF=0.25;AN=8;AO=19;CIGAR=1X;DP=140;DPB=140;DPRA=0;EPP=44.2683;EPPR=265.758;GTI=0;LEN=1;MEANALT=1;MQM=25.2632;MQMR=59.3554;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=757;QR=4786;RO=121;RPL=0;RPP=44.2683;RPPR=265.758;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=121;SRP=265.758;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:33:29,4:29:1146:4:157:-2.28946,0,-93.4795 0/0:41:37,4:37:1457:4:164:0,-2.4863,-121.435 0/0:44:39,5:39:1557:5:200:0,-7.72835,-134.673 0/1:22:16,6:16:626:6:236:-8.82568,0,-50.0473 dDocent_Contig_1860 12 . A C 106.938 . AB=0.0985915;ABP=301.114;AC=2;AF=0.25;AN=8;AO=21;CIGAR=1X;DP=454;DPB=454;DPRA=0.883817;EPP=48.6112;EPPR=943.258;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=850;QR=17265;RO=433;RPL=0;RPP=48.6112;RPPR=943.258;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=433;SRP=943.258;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:157:157,0:157:6267:0:0:0,-47.2617,-563.781 0/1:127:116,11:116:4612:11:442:-1.90245,0,-376.771 0/1:86:76,10:76:3022:10:408:-11.192,0,-246.184 0/0:84:84,0:84:3364:0:0:0,-25.2865,-302.805 dDocent_Contig_1861 98 . N T 203.256 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=7;CIGAR=1X;DP=7;DPB=7;DPRA=0;EPP=18.2106;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=216;QR=0;RO=0;RPL=7;RPP=18.2106;RPPR=0;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:52:-4.93894,-0.60206,0 1/1:5:0,5:0:0:5:164:-15.0838,-1.50515,0 ./.:.:.:.:.:.:.:. dDocent_Contig_1863 209 . N G 176.866 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=5;CIGAR=1X;DP=5;DPB=5;DPRA=0;EPP=13.8677;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=185;QR=0;RO=0;RPL=5;RPP=13.8677;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:105:-9.79159,-0.90309,0 1/1:2:0,2:0:0:2:80:-7.59157,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_1864 107 . N T 242.411 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=8;CIGAR=1X;DP=8;DPB=8;DPRA=0;EPP=20.3821;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=259;QR=0;RO=0;RPL=0;RPP=20.3821;RPPR=0;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:5:0,5:0:0:5:170:-15.6347,-1.50515,0 1/1:3:0,3:0:0:3:89:-8.30433,-0.90309,0 ./.:.:.:.:.:.:.:. dDocent_Contig_1865 16 . C A 321.756 . AB=0.137056;ABP=228.414;AC=2;AF=0.25;AN=8;AO=27;CIGAR=1X;DP=506;DPB=506;DPRA=0.63754;EPP=61.6401;EPPR=1040.97;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.993724;PAO=0;PQA=0;PQR=0;PRO=0;QA=1036;QR=19250;RO=478;RPL=0;RPP=61.6401;RPPR=1040.97;RPR=27;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=478;SRP=1040.97;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:139:139,0:139:5575:0:0:0,-41.8432,-501.554 0/0:170:169,0:169:6830:0:0:0,-50.8741,-614.068 0/1:125:106,19:106:4253:19:712:-26.7641,0,-345.084 0/1:72:64,8:64:2592:8:324:-7.85524,0,-211.723 dDocent_Contig_1866 45 . G A 282.371 . AB=0.197531;ABP=67.377;AC=3;AF=0.375;AN=8;AO=16;CIGAR=2X;DP=105;DPB=105;DPRA=1.125;EPP=37.7539;EPPR=196.271;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=615;QR=3359;RO=89;RPL=0;RPP=37.7539;RPPR=196.271;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=89;SRP=196.271;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:29:22,7:22:837:7:272:-16.1167,0,-66.9207 0|1:44:36,8:36:1328:8:304:-14.4739,0,-106.555 0|0:24:24,0:24:926:0:0:0,-7.22472,-83.6539 0|1:8:7,1:7:268:1:39:-1.48832,0,-22.0728 dDocent_Contig_1867 144 . C T 78.6259 . AB=0.263158;ABP=12.2676;AC=1;AF=0.125;AN=8;AO=5;CIGAR=2X;DP=128;DPB=128;DPRA=0.522936;EPP=13.8677;EPPR=267.93;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=161;QR=4125;RO=122;RPL=0;RPP=13.8677;RPPR=267.93;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=267.93;SRR=122;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:36:35,0:35:1195:0:0:0,-10.536,-107.472 0|0:51:51,0:51:1713:0:0:0,-15.3525,-154.429 0|1:19:14,5:14:476:5:161:-9.08443,0,-37.4399 0|0:22:22,0:22:741:0:0:0,-6.62266,-66.9951 dDocent_Contig_1868 12 . G C 97.8638 . AB=0.192308;ABP=24.391;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=284;DPB=284;DPRA=0.44898;EPP=20.3821;EPPR=602.337;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=324;QR=11029;RO=276;RPL=0;RPP=20.3821;RPPR=602.337;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=276;SRP=602.337;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:83:83,0:83:3316:0:0:0,-24.9855,-298.495 0/0:113:113,0:113:4521:0:0:0,-34.0164,-406.818 0/0:62:59,3:59:2365:3:119:0,-7.56884,-201.91 0/1:26:21,5:21:827:5:205:-11.0082,0,-66.9154 dDocent_Contig_1869 25 . T C 9661.28 . AB=0.560071;ABP=20.7504;AC=4;AF=0.5;AN=8;AO=317;CIGAR=1X;DP=566;DPB=566;DPRA=0;EPP=691.367;EPPR=541.535;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.835962;PAIREDR=0.935484;PAO=0;PQA=0;PQR=0;PRO=0;QA=12687;QR=9466;RO=248;RPL=0;RPP=691.367;RPPR=541.535;RPR=317;RUN=1;SAF=317;SAP=691.367;SAR=0;SRF=248;SRP=541.535;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:218:82,136:82:3126:136:5403:-420.488,0,-215.83 0/1:181:81,100:81:3073:100:4023:-307.555,0,-222.209 0/1:107:59,47:59:2261:47:1902:-139.068,0,-171.375 0/1:60:26,34:26:1006:34:1359:-104.507,0,-72.7807 dDocent_Contig_1870 24 . T A 353.897 . AB=0.222222;ABP=57.2971;AC=3;AF=0.375;AN=8;AO=18;CIGAR=1X2M1X;DP=106;DPB=106;DPRA=1.08;EPP=42.0968;EPPR=194.1;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=696;QR=3481;RO=88;RPL=0;RPP=42.0968;RPPR=194.1;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=88;SRP=194.1;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:44:39,5:39:1558:5:189:-4.12723,0,-127.22 0|0:25:25,0:25:983:0:0:0,-7.52575,-88.7727 0|1:23:13,10:13:508:10:390:-28.533,0,-39.1411 0|1:14:11,3:11:432:3:117:-6.69579,0,-35.0158 dDocent_Contig_1871 8 . A G 110.321 . AB=0.140625;ABP=74.8046;AC=2;AF=0.25;AN=8;AO=14;CIGAR=1X;DP=127;DPB=127;DPRA=0;EPP=33.4109;EPPR=248.387;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=528;QR=4343;RO=113;RPL=0;RPP=33.4109;RPPR=248.387;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=113;SRP=248.387;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:24,6:24:930:6:229:-11.9444,0,-74.9857 0/0:46:42,4:42:1612:4:147:0,-0.259814,-131.759 0/1:34:31,3:31:1193:3:113:-0.304388,0,-97.4322 0/0:17:16,1:16:608:1:39:0,-1.22095,-51.1609 dDocent_Contig_1872 22 . T C 488.615 . AB=0.193548;ABP=104.159;AC=2;AF=0.25;AN=8;AO=26;CIGAR=1X;DP=177;DPB=177;DPRA=0;EPP=59.4686;EPPR=330.903;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1059;QR=6030;RO=151;RPL=0;RPP=59.4686;RPPR=330.903;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=151;SRP=330.903;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:58:46,12:46:1842:12:489:-26.9016,0,-148.526 0/1:66:54,12:54:2178:12:488:-24.4035,0,-176.319 0/0:35:34,1:34:1329:1:41:0,-6.44148,-115.775 0/0:18:17,1:17:681:1:41:0,-1.32397,-57.5231 dDocent_Contig_1873 14 . C A 2306.5 . AB=0.199211;ABP=401.435;AC=3;AF=0.375;AN=8;AO=101;CIGAR=1X2M1X;DP=507;DPB=507;DPRA=0;EPP=222.329;EPPR=717.425;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3989;QR=13061;RO=329;RPL=0;RPP=222.329;RPPR=717.425;RPR=101;RUN=1;SAF=101;SAP=222.329;SAR=0;SRF=329;SRP=717.425;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:233:168,0,33,31:168:6687:0,33,31:0,1296,1237:-56.0093,-106.582,-657.177,0,-550.593,-540.659,-4.7108,-555.308,-448.724,-545.976 0|1:167:85,4,50,28:85:3363:4,50,28:152,1990,1131:-138.264,-151.387,-426.943,0,-264.294,-261.707,-70.6096,-334.906,-183.517,-338.942 0|1:71:50,2,15,4:50:1965:2,15,4:80,583,152:-32.854,-41.3141,-202.335,0,-155.034,-157.109,-35.4466,-190.477,-149.164,-195.863 0|0:36:26,2,3,5:26:1046:2,3,5:76,120,204:-9.01256,-10.6118,-96.2126,-6.95429,-86.9299,-92.2579,0,-79.9824,-76.3285,-84.7084 dDocent_Contig_1874 1 . N G 1280.28 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=36;CIGAR=1X;DP=36;DPB=36;DPRA=0;EPP=81.1833;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=0.194444;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1400;QR=0;RO=0;RPL=0;RPP=81.1833;RPPR=0;RPR=36;RUN=1;SAF=36;SAP=81.1833;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:14:0,14:0:0:14:555:-50.2915,-4.21442,0 1/1:6:0,6:0:0:6:231:-21.1552,-1.80618,0 1/1:13:0,13:0:0:13:494:-44.7914,-3.91339,0 1/1:3:0,3:0:0:3:120:-11.1873,-0.90309,0 dDocent_Contig_1875 10 . C T 6367.43 . AB=0.750943;ABP=147.958;AC=4;AF=0.5;AN=8;AO=199;CIGAR=1X;DP=265;DPB=265;DPRA=0;EPP=435.133;EPPR=146.327;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=8014;QR=2623;RO=66;RPL=0;RPP=435.133;RPPR=146.327;RPR=199;RUN=1;SAF=199;SAP=435.133;SAR=0;SRF=66;SRP=146.327;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:84:13,71:13:509:71:2848:-231.131,0,-20.8624 0/1:66:28,38:28:1104:38:1537:-118.696,0,-79.7758 0/1:68:11,57:11:440:57:2295:-186.237,0,-19.4838 0/1:47:14,33:14:570:33:1334:-106.169,0,-37.4936 dDocent_Contig_1876 45 . G T 361.58 . AB=0.161765;ABP=138.153;AC=2;AF=0.25;AN=8;AO=26;CIGAR=1X;DP=332;DPB=332;DPRA=0.62069;EPP=59.4686;EPPR=667.481;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=0.993464;PAO=0;PQA=0;PQR=0;PRO=0;QA=1033;QR=12152;RO=306;RPL=0;RPP=59.4686;RPPR=667.481;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=306;SRP=667.481;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:116:116,0:116:4594:0:0:0,-34.9195,-413.39 0/1:72:61,11:61:2444:11:443:-18.5506,0,-198.434 0/0:80:76,4:76:3022:4:157:0,-9.57598,-257.572 0/1:64:53,11:53:2092:11:433:-20.0511,0,-169.2 dDocent_Contig_1877 105 . N T 484.379 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=18;CIGAR=3X;DP=18;DPB=18;DPRA=0;EPP=42.0968;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=15.9832;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=535;QR=0;RO=0;RPL=0;RPP=42.0968;RPPR=0;RPR=18;RUN=1;SAF=0;SAP=42.0968;SAR=18;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:18:0,18:0:0:18:535:-48.4379,-5.41854,0 .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. dDocent_Contig_1878 17 . T C 2541.6 . AB=0.5;ABP=3.0103;AC=5;AF=0.625;AN=8;AO=78;CIGAR=1X;DP=123;DPB=123;DPRA=0;EPP=172.385;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3155;QR=1790;RO=45;RPL=0;RPP=172.385;RPPR=100.727;RPR=78;RUN=1;SAF=78;SAP=172.385;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:33:0,33:0:0:33:1323:-119.327,-9.93399,0 0/1:56:30,26:30:1184:26:1057:-78.559,0,-89.9784 0/1:18:7,11:7:284:11:449:-35.3473,0,-20.5152 0/1:16:8,8:8:322:8:326:-24.8934,0,-24.5319 dDocent_Contig_1879 16 . A G 1578.61 . AB=0.243056;ABP=168.163;AC=4;AF=0.5;AN=8;AO=70;CIGAR=1X;DP=288;DPB=288;DPRA=0;EPP=155.013;EPPR=476.391;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=0.885714;PAIREDR=0.986239;PAO=0;PQA=0;PQR=0;PRO=0;QA=2763;QR=8623;RO=218;RPL=0;RPP=155.013;RPPR=476.391;RPR=70;RUN=1;SAF=70;SAP=155.013;SAR=0;SRF=218;SRP=476.391;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:96:61,35:61:2415:35:1393:-96.7226,0,-188.607 0/1:105:96,9:96:3824:9:365:-1.6067,0,-312.561 0/1:62:50,12:50:1965:12:466:-23.6171,0,-158.382 0/1:25:11,14:11:419:14:539:-41.3223,0,-30.5277 dDocent_Contig_1880 7 . A T 3853.46 . AB=0.563025;ABP=11.2218;AC=4;AF=0.5;AN=8;AO=134;CIGAR=1X4M;DP=238;DPB=238;DPRA=0;EPP=293.988;EPPR=213.643;GTI=0;LEN=1;MEANALT=1.75;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=1.38778e-17;PAIRED=0.940299;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5115;QR=3733;RO=97;RPL=0;RPP=293.988;RPPR=213.643;RPR=134;RUN=1;SAF=134;SAP=293.988;SAR=0;SRF=97;SRP=213.643;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:62:27,4,31:27:1045:4,31:139,1172:-87.96,-84.7916,-169.435,0,-74.5829,-76.5457 0|1:75:34,2,39:34:1311:2,39:78,1495:-112.461,-116.284,-223.341,0,-101.242,-95.9137 0|1:56:23,0,33:23:879:0,33:0,1257:-96.5616,-103.485,-175.61,0,-72.5057,-62.5717 0|1:45:13,1,31:13:498:1,31:39,1191:-93.8528,-94.5601,-135.13,0,-37.6585,-31.5329 dDocent_Contig_1881 1 . N G 149.678 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=6.27915;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=162;QR=0;RO=0;RPL=0;RPP=11.6962;RPPR=0;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:4:0,4:0:0:4:162:-14.967,-1.20412,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_1882 37 . G T 389.783 . AB=0.4;ABP=6.05036;AC=2;AF=0.25;AN=8;AO=14;CIGAR=1X;DP=68;DPB=68;DPRA=1.06061;EPP=33.4109;EPPR=120.27;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.814815;PAO=0;PQA=0;PQR=0;PRO=0;QA=569;QR=2123;RO=54;RPL=0;RPP=33.4109;RPPR=120.27;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:25:25,0:25:987:0:0:0,-7.52575,-89.1236 0/1:12:9,3:9:340:3:122:-7.76013,0,-27.3325 0/1:23:12,11:12:475:11:447:-33.6618,0,-36.1762 0/0:8:8,0:8:321:0:0:0,-2.40824,-29.2579 dDocent_Contig_1883 18 . C T 1516.91 . AB=0.166348;ABP=508.723;AC=4;AF=0.5;AN=8;AO=87;CIGAR=1X;DP=523;DPB=523;DPRA=0;EPP=191.928;EPPR=949.772;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.997706;PAO=0;PQA=0;PQR=0;PRO=0;QA=3482;QR=17474;RO=436;RPL=0;RPP=191.928;RPPR=949.772;RPR=87;RUN=1;SAF=87;SAP=191.928;SAR=0;SRF=436;SRP=949.772;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:120:103,17:103:4119:17:694:-26.664,0,-334.552 0/1:159:123,36:123:4938:36:1431:-81.1809,0,-396.421 0/1:167:143,24:143:5727:24:958:-36.2463,0,-464.952 0/1:77:67,10:67:2690:10:399:-13.0891,0,-219.028 dDocent_Contig_1884 56 . A G 164.363 . AB=0.127273;ABP=135.746;AC=1;AF=0.125;AN=8;AO=14;CIGAR=1X;DP=350;DPB=350;DPRA=1.375;EPP=33.4109;EPPR=730.454;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.857143;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=557;QR=13301;RO=335;RPL=14;RPP=33.4109;RPPR=730.454;RPR=0;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=335;SRP=730.454;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:110:96,14:96:3793:14:557:-17.3571,0,-308.292 0/0:117:117,0:117:4670:0:0:0,-35.2205,-420.223 0/0:81:80,0:80:3153:0:0:0,-24.0824,-283.46 0/0:42:42,0:42:1685:0:0:0,-12.6433,-151.879 dDocent_Contig_1886 39 . G A 9351.58 . AB=0.762148;ABP=236.402;AC=4;AF=0.5;AN=8;AO=298;CIGAR=1X;DP=391;DPB=391;DPRA=0;EPP=650.109;EPPR=202.786;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=11756;QR=3663;RO=92;RPL=0;RPP=650.109;RPPR=202.786;RPR=298;RUN=1;SAF=298;SAP=650.109;SAR=0;SRF=92;SRP=202.786;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:142:27,115:27:1079:115:4509:-363.019,0,-54.6524 0/1:110:42,67:42:1664:67:2649:-205.321,0,-116.764 0/1:89:17,72:17:684:72:2853:-230.088,0,-35.0972 0/1:50:6,44:6:236:44:1745:-142.22,0,-6.55878 dDocent_Contig_1887 19 . T A 110.921 . AB=0.181818;ABP=32.0291;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=97;DPB=97;DPRA=1.54688;EPP=16.0391;EPPR=200.614;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=56.0989;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.571429;PAO=0;PQA=0;PQR=0;PRO=0;QA=243;QR=3644;RO=91;RPL=0;RPP=16.0391;RPPR=200.614;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=91;SRP=200.614;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:27:27,0:27:1076:0:0:0,-8.12781,-94.6377 0/0:24:24,0:24:971:0:0:0,-7.22472,-87.288 0/1:33:27,6:27:1075:6:243:-12.314,0,-85.2126 0/0:13:13,0:13:522:0:0:0,-3.91339,-47.3267 dDocent_Contig_1888 11 . C A 10212.3 . AB=0.621269;ABP=71.4765;AC=4;AF=0.5;AN=8;AO=333;CIGAR=1X;DP=536;DPB=536;DPRA=0;EPP=726.111;EPPR=441.648;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=13196;QR=7949;RO=202;RPL=0;RPP=726.111;RPPR=441.648;RPR=333;RUN=1;SAF=333;SAP=726.111;SAR=0;SRF=202;SRP=441.648;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:182:59,122:59:2304:122:4854:-382.178,0,-152.946 0/1:176:56,120:56:2230:120:4762:-375.496,0,-147.886 0/1:109:56,53:56:2219:53:2094:-155.828,0,-167.075 0/1:69:31,38:31:1196:38:1486:-113.22,0,-87.1509 dDocent_Contig_1890 32 . C G 4097.76 . AB=0.773585;ABP=71.9238;AC=5;AF=0.625;AN=8;AO=127;CIGAR=1X;DP=153;DPB=153;DPRA=0;EPP=278.787;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5023;QR=1036;RO=26;RPL=0;RPP=278.787;RPPR=59.4686;RPR=127;RUN=1;SAF=127;SAP=278.787;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:47:2,45:2:79:45:1802:-154.896,-6.65117,0 0/1:69:10,59:10:398:59:2356:-191.431,0,-15.4078 0/1:20:12,8:12:483:8:304:-21.6957,0,-37.7999 0/1:17:2,15:2:76:15:561:-45.6928,0,-2.09603 dDocent_Contig_1891 150 . T A 271.261 . AB=0.133333;ABP=195.692;AC=3;AF=0.375;AN=8;AO=22;CIGAR=1X;DP=204;DPB=204;DPRA=1.41026;EPP=50.7827;EPPR=398.218;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=885;QR=7117;RO=182;RPL=0;RPP=50.7827;RPPR=398.218;RPR=22;RUN=1;SAF=0;SAP=50.7827;SAR=22;SRF=0;SRP=398.218;SRR=182;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:64:55,9:55:2184:9:366:-14.039,0,-177.469 0/0:39:39,0:39:1514:0:0:0,-11.7402,-136.5 0/1:65:59,6:59:2326:6:246:-2.95317,0,-189.942 0/1:36:29,7:29:1093:7:273:-14.0965,0,-87.8064 dDocent_Contig_1892 13 . C T 15239.8 . AB=0.605295;ABP=83.036;AC=4;AF=0.5;AN=8;AO=503;CIGAR=1X;DP=831;DPB=831;DPRA=0;EPP=1095.26;EPPR=715.253;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=19777;QR=13040;RO=328;RPL=0;RPP=1095.26;RPPR=715.253;RPR=503;RUN=1;SAF=503;SAP=1095.26;SAR=0;SRF=328;SRP=715.253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:265:103,162:103:4087:162:6356:-492.059,0,-288.02 0/1:277:118,159:118:4698:159:6240:-478.034,0,-339.345 0/1:168:63,105:63:2504:105:4128:-320.939,0,-174.927 0/1:121:44,77:44:1751:77:3053:-238.442,0,-121.386 dDocent_Contig_1893 77 . T C 45.6981 . AB=0.125;ABP=51.8684;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X;DP=321;DPB=321;DPRA=0.528571;EPP=22.5536;EPPR=680.51;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.996795;PAO=0;PQA=0;PQR=0;PRO=0;QA=337;QR=12005;RO=312;RPL=9;RPP=22.5536;RPPR=680.51;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=312;SRP=680.51;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:80:80,0:80:3072:0:0:0,-24.0824,-276.635 0/0:130:130,0:130:5012:0:0:0,-39.1339,-451.093 0/0:71:67,4:67:2589:4:143:0,-8.15532,-219.981 0/1:40:35,5:35:1332:5:194:-5.79164,0,-108.127 dDocent_Contig_1894 127 . C G 45.6893 . AB=0.135135;ABP=45.7942;AC=2;AF=0.25;AN=8;AO=6;CIGAR=1X;DP=66;DPB=66;DPRA=0.960784;EPP=16.0391;EPPR=133.299;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=228;QR=2215;RO=60;RPL=0;RPP=16.0391;RPPR=133.299;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=133.299;SRR=60;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:26,3:26:926:3:117:-2.18051,0,-74.9148 0/0:12:11,1:11:427:1:35:0,-0.113731,-35.2865 0/0:17:17,0:17:642:0:0:0,-5.11751,-58.1136 0/1:8:6,2:6:220:2:76:-4.80643,0,-17.7444 dDocent_Contig_1895 7 . T A 605.815 . AB=0.409836;ABP=7.31765;AC=3;AF=0.375;AN=8;AO=27;CIGAR=1X;DP=112;DPB=112;DPRA=0;EPP=61.6401;EPPR=187.585;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=981;QR=3275;RO=85;RPL=0;RPP=61.6401;RPPR=187.585;RPR=27;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=85;SRP=187.585;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:51:49,2:49:1892:2:72:0,-8.51589,-163.688 0/1:35:15,20:15:579:20:724:-54.951,0,-41.9167 0/1:20:16,4:16:612:4:148:-7.66137,0,-49.3987 0/1:6:5,1:5:192:1:37:-1.89165,0,-15.8438 dDocent_Contig_1896 12 . C T 424.368 . AB=0.142857;ABP=227.913;AC=1;AF=0.125;AN=8;AO=30;CIGAR=1X;DP=632;DPB=632;DPRA=0.760446;EPP=68.1545;EPPR=1308.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1202;QR=24046;RO=601;RPL=0;RPP=68.1545;RPPR=1308.07;RPR=30;RUN=1;SAF=30;SAP=68.1545;SAR=0;SRF=601;SRP=1308.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:203:203,0:203:8183:0:0:0,-61.1091,-735.99 0/1:203:174,29:174:6947:29:1161:-43.6586,0,-563.794 0/0:156:155,0:155:6168:0:0:0,-46.6596,-554.623 0/0:70:69,1:69:2748:1:41:0,-16.9775,-243.339 dDocent_Contig_1897 30 . C G 494.713 . AB=0.176829;ABP=151.783;AC=4;AF=0.5;AN=8;AO=29;CIGAR=1X;DP=164;DPB=164;DPRA=0;EPP=65.983;EPPR=296.159;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1143;QR=5419;RO=135;RPL=0;RPP=65.983;RPPR=296.159;RPR=29;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=135;SRP=296.159;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:56:48,8:48:1941:8:315:-11.8551,0,-158.026 0/1:67:59,8:59:2367:8:312:-8.26988,0,-193.013 0/1:29:20,9:20:798:9:358:-23.8488,0,-63.4086 0/1:12:8,4:8:313:4:158:-10.987,0,-24.9189 dDocent_Contig_1899 178 . C T 40.7445 . AB=0.25;ABP=7.35324;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X;DP=59;DPB=59;DPRA=0.470588;EPP=7.35324;EPPR=126.784;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=78;QR=2128;RO=57;RPL=2;RPP=7.35324;RPPR=126.784;RPR=0;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=126.784;SRR=57;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:8:6,2:6:227:2:78:-4.99523,0,-18.3849 0/0:16:16,0:16:609:0:0:0,-4.81648,-55.1461 0/0:22:22,0:22:802:0:0:0,-6.62266,-72.4867 0/0:13:13,0:13:490:0:0:0,-3.91339,-44.4435 dDocent_Contig_1900 11 . A T 286.625 . AB=0.131429;ABP=209.499;AC=1;AF=0.125;AN=8;AO=32;CIGAR=1X;DP=573;DPB=573;DPRA=0;EPP=72.4974;EPPR=1018.54;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.9612;NS=4;NUMALT=1;ODDS=0;PAIRED=0.46875;PAIREDR=0.508318;PAO=0;PQA=0;PQR=0;PRO=0;QA=1279;QR=21586;RO=541;RPL=0;RPP=72.4974;RPPR=1177.78;RPR=32;RUN=1;SAF=32;SAP=72.4974;SAR=0;SRF=522;SRP=1018.54;SRR=19;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:181:177,4:177:7057:4:162:0,-39.5195,-619.827 0/1:175:152,23:152:6101:23:914:-29.8843,0,-496.12 0/0:153:149,4:149:5930:4:162:0,-31.0906,-518.523 0/0:64:63,1:63:2498:1:41:0,-15.1714,-220.869 dDocent_Contig_1901 11 . A C 201.235 . AB=0.264706;ABP=19.3602;AC=1;AF=0.125;AN=8;AO=13;CIGAR=1X;DP=122;DPB=122;DPRA=1.23077;EPP=31.2394;EPPR=239.701;GTI=0;LEN=1;MEANALT=1;MQM=56.4615;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.846154;PAIREDR=0.990826;PAO=0;PQA=0;PQR=0;PRO=0;QA=506;QR=4392;RO=109;RPL=0;RPP=31.2394;RPPR=239.701;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=109;SRP=239.701;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:26:26,0:26:1038:0:0:0,-7.82678,-93.7099 0/0:44:41,3:41:1651:3:118:0,-3.1286,-138.699 0/1:34:25,9:25:1009:9:347:-21.3452,0,-80.8694 0/0:18:17,1:17:694:1:41:0,-1.32397,-58.6928 dDocent_Contig_1903 22 . A G 258.473 . AB=0.19403;ABP=57.4916;AC=1;AF=0.125;AN=8;AO=17;CIGAR=1X;DP=224;DPB=224;DPRA=0.555556;EPP=39.9253;EPPR=452.505;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=55.285;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.874396;PAO=0;PQA=0;PQR=0;PRO=0;QA=677;QR=8118;RO=207;RPL=0;RPP=39.9253;RPPR=452.505;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=207;SRP=452.505;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:84:84,0:84:3283:0:0:0,-25.2865,-276.34 0/1:67:54,13:54:2128:13:521:-27.0684,0,-158.751 0/0:38:35,3:35:1380:3:116:0,-0.62236,-109.295 0/0:35:34,1:34:1327:1:40:0,-6.54037,-113.274 dDocent_Contig_1904 11 . A G 1048.25 . AB=0.0526316;ABP=69.0688;AC=3;AF=0.375;AN=8;AO=2;CIGAR=1X2M1X;DP=265;DPB=265;DPRA=0.44186;EPP=7.35324;EPPR=463.362;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=80;QR=8286;RO=212;RPL=0;RPP=7.35324;RPPR=463.362;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=212;SRP=463.362;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:86:81,5,0:81:3153:5,0:199,0:0,-7.59964,-265.613,-24.3834,-267.118,-283.505 0|1:86:54,32,0:54:2115:32,0:1246,0:-86.5267,0,-164.675,-102.782,-174.308,-276.7 0|1:55:47,8,0:47:1844:8,0:311,0:-11.7963,0,-149.638,-25.9447,-152.046,-177.602 0|1:38:30,6,2:30:1174:6,2:237,80:-10.4683,0,-94.7145,-12.9078,-89.93,-108.831 dDocent_Contig_1905 32 . T G 5790.16 . AB=0.78022;ABP=65.0762;AC=6;AF=0.75;AN=8;AO=171;CIGAR=1X;DP=191;DPB=191;DPRA=0;EPP=374.332;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6755;QR=789;RO=20;RPL=0;RPP=374.332;RPPR=46.4397;RPR=171;RUN=1;SAF=171;SAP=374.332;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:61:0,61:0:0:61:2423:-218.224,-18.3628,0 1/1:39:0,39:0:0:39:1544:-139.204,-11.7402,0 0/1:59:13,46:13:507:46:1824:-146.618,0,-28.2114 0/1:32:7,25:7:282:25:964:-77.4141,0,-16.1196 dDocent_Contig_1906 10 . A T 9922.54 . AB=0.491071;ABP=3.47562;AC=4;AF=0.5;AN=8;AO=330;CIGAR=1X;DP=672;DPB=672;DPRA=0;EPP=719.596;EPPR=745.654;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=13332;QR=13764;RO=342;RPL=0;RPP=719.596;RPPR=745.654;RPR=330;RUN=1;SAF=330;SAP=719.596;SAR=0;SRF=342;SRP=745.654;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:236:141,95:141:5671:95:3839:-274.451,0,-439.136 0/1:242:107,135:107:4312:135:5474:-419.606,0,-315.163 0/1:114:51,63:51:2046:63:2521:-192.71,0,-150.007 0/1:80:43,37:43:1735:37:1498:-110.977,0,-132.285 dDocent_Contig_1907 129 . A C 9743.37 . AB=0.877273;ABP=274.997;AC=5;AF=0.625;AN=8;AO=338;CIGAR=1X;DP=365;DPB=365;DPRA=0;EPP=736.968;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=11593;QR=933;RO=27;RPL=0;RPP=736.968;RPPR=61.6401;RPR=338;RUN=1;SAF=0;SAP=736.968;SAR=338;SRF=0;SRP=61.6401;SRR=27;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:145:0,145:0:0:145:4996:-449.807,-43.6494,0 0/1:92:11,81:11:366:81:2798:-224.377,0,-5.56261 0/1:78:11,67:11:388:67:2268:-180.903,0,-11.7772 0/1:50:5,45:5:179:45:1531:-123.027,0,-1.40889 dDocent_Contig_1908 52 . C T 229.664 . AB=0.153846;ABP=97.7199;AC=1;AF=0.125;AN=8;AO=16;CIGAR=1X;DP=329;DPB=329;DPRA=1.06918;EPP=37.7539;EPPR=682.681;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=648;QR=12435;RO=313;RPL=16;RPP=37.7539;RPPR=682.681;RPR=0;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=313;SRP=682.681;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:91:77,14:77:3064:14:566:-23.8873,0,-248.453 0/0:107:107,0:107:4246:0:0:0,-32.2102,-382.1 0/0:79:77,2:77:3069:2:82:0,-16.0017,-268.516 0/0:52:52,0:52:2056:0:0:0,-15.6536,-185.225 dDocent_Contig_1909 112 . G C 246.714 . AB=0.202532;ABP=63.7291;AC=2;AF=0.25;AN=8;AO=16;CIGAR=1X;DP=148;DPB=148;DPRA=1.14493;EPP=37.7539;EPPR=289.645;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=558;QR=4504;RO=132;RPL=0;RPP=37.7539;RPPR=289.645;RPR=16;RUN=1;SAF=0;SAP=37.7539;SAR=16;SRF=0;SRP=289.645;SRR=132;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:52:52,0:52:1791:0:0:0,-15.6536,-161.475 0/1:33:28,5:28:970:5:173:-5.97617,0,-77.68 0/1:46:35,11:35:1168:11:385:-21.1389,0,-91.5683 0/0:17:17,0:17:575:0:0:0,-5.11751,-52.0695 dDocent_Contig_1910 7 . T C 6190.65 . AB=0.348837;ABP=139.561;AC=4;AF=0.5;AN=8;AO=240;CIGAR=1X;DP=688;DPB=688;DPRA=0;EPP=524.164;EPPR=973.658;GTI=0;LEN=1;MEANALT=1.25;MQM=59.775;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=9264;QR=17132;RO=447;RPL=0;RPP=524.164;RPPR=973.658;RPR=240;RUN=1;SAF=240;SAP=524.164;SAR=0;SRF=447;SRP=973.658;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:208:165,43:165:6326:43:1668:-87.7654,0,-506.65 0/1:192:118,73:118:4532:73:2825:-193.684,0,-350.162 0/1:178:100,78:100:3840:78:3005:-217.025,0,-292.111 0/1:110:64,46:64:2434:46:1766:-126.08,0,-186.154 dDocent_Contig_1911 31 . C A 4197.24 . AB=0.594828;ABP=21.1309;AC=4;AF=0.5;AN=8;AO=138;CIGAR=1X;DP=232;DPB=232;DPRA=0;EPP=302.673;EPPR=207.129;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5489;QR=3752;RO=94;RPL=0;RPP=302.673;RPPR=207.129;RPR=138;RUN=1;SAF=138;SAP=302.673;SAR=0;SRF=94;SRP=207.129;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:77:53,24:53:2113:24:960:-63.523,0,-167.18 0/1:66:18,48:18:719:48:1882:-149.725,0,-45.1711 0/1:62:19,43:19:761:43:1723:-136.629,0,-50.1505 0/1:27:4,23:4:159:23:924:-75.3365,0,-6.56393 dDocent_Contig_1912 58 . C T 3838.38 . AB=0.482428;ABP=3.84975;AC=4;AF=0.5;AN=8;AO=151;CIGAR=1X4M;DP=313;DPB=316.8;DPRA=0;EPP=330.903;EPPR=265.758;GTI=0;LEN=1;MEANALT=4.25;MQM=39.6291;MQMR=30.9917;NS=4;NUMALT=3;ODDS=2.77556e-17;PAIRED=0.986755;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5627;QR=4760;RO=121;RPL=0;RPP=330.903;RPPR=265.758;RPR=151;RUN=1;SAF=151;SAP=330.903;SAR=0;SRF=121;SRP=265.758;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:105:43,4,8,49:43:1700:4,8,49:129,315,1852:-127.775,-131.374,-210.465,-128.021,-198.96,-205.899,0,-70.9777,-67.6185,-65.5787 0|1:55:26,3,1,23:26:1000:3,1,23:120,40,774:-48.6698,-47.4063,-119.597,-54.1355,-118.139,-126.925,0,-63.9806,-70.7069,-66.1433 0|1:101:34,0,6,55:34:1343:0,6,55:0,240,2134:-151.374,-161.609,-243.163,-143.455,-225.008,-223.201,0,-81.5356,-63.3742,-64.9789 0|1:52:18,5,4,24:18:717:5,4,24:196,154,867:-61.5089,-52.0016,-92.3553,-59.1499,-86.0778,-99.7987,0,-26.9279,-34.0822,-34.6382 dDocent_Contig_1914 138 . C T 249.118 . AB=0.282051;ABP=19.1015;AC=1;AF=0.125;AN=8;AO=12;CIGAR=1X;DP=111;DPB=111;DPRA=4.28571;EPP=29.068;EPPR=217.986;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=455;QR=3781;RO=99;RPL=0;RPP=29.068;RPPR=217.986;RPR=12;RUN=1;SAF=0;SAP=29.068;SAR=12;SRF=0;SRP=217.986;SRR=99;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:51:50,1:50:1929:1:38:0,-11.5553,-170.019 0/1:39:28,11:28:1028:11:417:-26.1337,0,-81.0514 0/0:10:10,0:10:389:0:0:0,-3.0103,-35.3653 0/0:11:11,0:11:435:0:0:0,-3.31133,-39.5018 dDocent_Contig_1915 98 . N C 187.852 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=6;CIGAR=1X;DP=6;DPB=6;DPRA=0;EPP=16.0391;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=7.66544;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=205;QR=0;RO=0;RPL=6;RPP=16.0391;RPPR=0;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:6:0,6:0:0:6:205:-18.785,-1.80618,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_1916 8 . A T 77.4142 . AB=0.25;ABP=11.6962;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=59;DPB=59;DPRA=1.11628;EPP=3.0103;EPPR=120.27;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=150;QR=2028;RO=54;RPL=0;RPP=11.6962;RPPR=120.27;RPR=4;RUN=1;SAF=2;SAP=3.0103;SAR=2;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:8:8,0:8:293:0:0:0,-2.40824,-26.7179 0/0:26:26,0:26:982:0:0:0,-7.82678,-88.6884 0/0:9:9,0:9:347:0:0:0,-2.70927,-31.5897 0/1:16:11,4:11:406:4:150:-8.96325,0,-31.9782 dDocent_Contig_1917 44 . C A 32.6534 . AB=0.181818;ABP=12.6832;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X;DP=41;DPB=41;DPRA=1.1;EPP=7.35324;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.846154;PAO=0;PQA=0;PQR=0;PRO=0;QA=79;QR=1546;RO=39;RPL=0;RPP=7.35324;RPPR=87.6977;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:9,2:9:341:2:79:-4.18591,0,-27.7271 0/0:9:9,0:9:359:0:0:0,-2.70927,-32.6743 0/0:11:11,0:11:441:0:0:0,-3.31133,-40.0448 0/0:10:10,0:10:405:0:0:0,-3.0103,-36.8104 dDocent_Contig_1918 107 . N C 54.1688 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=4.89285;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=57;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:57:-5.41363,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_1920 87 . T A 4977.34 . AB=0.69708;ABP=95.4485;AC=4;AF=0.5;AN=8;AO=191;CIGAR=1X;DP=274;DPB=274;DPRA=0;EPP=417.762;EPPR=183.243;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6495;QR=2857;RO=83;RPL=191;RPP=417.762;RPPR=183.243;RPR=0;RUN=1;SAF=191;SAP=417.762;SAR=0;SRF=83;SRP=183.243;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:93:17,76:17:589:76:2552:-201.941,0,-25.341 0/1:99:27,72:27:936:72:2485:-194.112,0,-54.7534 0/1:59:30,29:30:1019:29:971:-69.9327,0,-74.2562 0/1:23:9,14:9:313:14:487:-37.2375,0,-21.5834 dDocent_Contig_1921 9 . C T 2803.64 . AB=0.359477;ABP=55.4946;AC=4;AF=0.5;AN=8;AO=110;CIGAR=1X;DP=306;DPB=306;DPRA=0;EPP=241.872;EPPR=428.619;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.972727;PAIREDR=0.979592;PAO=0;PQA=0;PQR=0;PRO=0;QA=4186;QR=7571;RO=196;RPL=0;RPP=241.872;RPPR=428.619;RPR=110;RUN=1;SAF=110;SAP=241.872;SAR=0;SRF=196;SRP=428.619;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:103:62,41:62:2406:41:1551:-108.854,0,-185.737 0/1:102:74,28:74:2847:28:1065:-65.4475,0,-225.695 0/1:65:35,30:35:1354:30:1141:-83.4227,0,-102.575 0/1:36:25,11:25:964:11:429:-28.1286,0,-76.2365 dDocent_Contig_1923 20 . C T 373.88 . AB=0.262295;ABP=32.9481;AC=3;AF=0.375;AN=8;AO=16;CIGAR=1X;DP=71;DPB=71;DPRA=2.03333;EPP=37.7539;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=0.9375;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=650;QR=2203;RO=55;RPL=0;RPP=37.7539;RPPR=122.441;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:18,2:18:727:2:81:-1.66513,0,-59.7341 0/1:24:14,10:14:564:10:405:-29.5851,0,-43.8745 0/0:10:10,0:10:392:0:0:0,-3.0103,-35.6329 0/1:17:13,4:13:520:4:164:-10.0324,0,-42.0259 dDocent_Contig_1924 14 . A T 393.872 . AB=0.160494;ABP=165.201;AC=2;AF=0.25;AN=8;AO=26;CIGAR=1X;DP=257;DPB=257;DPRA=1.70526;EPP=59.4686;EPPR=504.62;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=999;QR=9038;RO=231;RPL=0;RPP=59.4686;RPPR=504.62;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=231;SRP=504.62;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:80:67,13:67:2612:13:501:-21.3514,0,-211.16 0/1:82:69,13:69:2691:13:498:-20.4795,0,-217.662 0/0:53:53,0:53:2078:0:0:0,-15.9546,-187.233 0/0:42:42,0:42:1657:0:0:0,-12.6433,-149.373 dDocent_Contig_1925 1 . N G 336.092 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=9;CIGAR=1X;DP=9;DPB=9;DPRA=0;EPP=22.5536;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=354;QR=0;RO=0;RPL=0;RPP=22.5536;RPPR=0;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:6:0,6:0:0:6:238:-21.7942,-1.80618,0 1/1:2:0,2:0:0:2:76:-7.21481,-0.60206,0 1/1:1:0,1:0:0:1:40:-3.99568,-0.30103,0 ./.:.:.:.:.:.:.:. dDocent_Contig_1926 7 . C T 6265.94 . AB=0.469008;ABP=7.04816;AC=4;AF=0.5;AN=8;AO=227;CIGAR=1X;DP=484;DPB=484;DPRA=0;EPP=495.935;EPPR=558.907;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=8633;QR=9829;RO=256;RPL=0;RPP=495.935;RPPR=558.907;RPR=227;RUN=1;SAF=227;SAP=495.935;SAR=0;SRF=256;SRP=558.907;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:181:111,70:111:4267:70:2675:-186.455,0,-329.605 0/1:111:38,73:38:1445:73:2781:-217.057,0,-96.9142 0/1:119:64,55:64:2458:55:2078:-151.425,0,-185.6 0/1:73:43,29:43:1659:29:1099:-77.1467,0,-127.508 dDocent_Contig_1928 66 . T C 1709.4 . AB=0.27551;ABP=131.703;AC=4;AF=0.5;AN=8;AO=81;CIGAR=1X;DP=294;DPB=294;DPRA=0;EPP=178.9;EPPR=463.362;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=2.77556e-17;PAIRED=1;PAIREDR=0.990566;PAO=0;PQA=0;PQR=0;PRO=0;QA=2927;QR=7718;RO=212;RPL=81;RPP=178.9;RPPR=463.362;RPR=0;RUN=1;SAF=81;SAP=178.9;SAR=0;SRF=212;SRP=463.362;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:77:66,10:66:2391:10:370:-10.6652,0,-192.469 0/1:86:61,25:61:2238:25:905:-55.8806,0,-175.783 0/1:81:53,28:53:1932:28:996:-65.5627,0,-149.767 0/1:50:32,18:32:1157:18:656:-44.3205,0,-89.3856 dDocent_Contig_1929 10 . T G 8425.24 . AB=0.64539;ABP=80.6751;AC=4;AF=0.5;AN=8;AO=273;CIGAR=1X;DP=423;DPB=423;DPRA=0;EPP=595.822;EPPR=326.56;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=10833;QR=5916;RO=149;RPL=0;RPP=595.822;RPPR=326.56;RPR=273;RUN=1;SAF=273;SAP=595.822;SAR=0;SRF=149;SRP=326.56;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:123:62,61:62:2484:61:2428:-181.649,0,-186.672 0/1:140:57,83:57:2260:83:3320:-256.704,0,-161.417 0/1:96:22,73:22:849:73:2900:-232.098,0,-47.7051 0/1:64:8,56:8:323:56:2185:-177.562,0,-10.173 dDocent_Contig_1930 88 . C A 107.289 . AB=0.2;ABP=34.2795;AC=1;AF=0.125;AN=8;AO=10;CIGAR=1X;DP=92;DPB=92;DPRA=2.28571;EPP=24.725;EPPR=181.071;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=328;QR=2778;RO=82;RPL=10;RPP=24.725;RPPR=181.071;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=82;SRP=181.071;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:18:18,0:18:599:0:0:0,-5.41854,-54.2243 0/0:24:22,2:22:764:2:65:0,-1.05143,-62.9081 0/1:40:32,8:32:1070:8:263:-11.9504,0,-84.5625 0/0:10:10,0:10:345:0:0:0,-3.0103,-31.3834 dDocent_Contig_1931 15 . C T 3653.76 . AB=0.366848;ABP=59.681;AC=4;AF=0.5;AN=8;AO=135;CIGAR=1X;DP=368;DPB=368;DPRA=0;EPP=296.159;EPPR=508.963;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5340;QR=9317;RO=233;RPL=0;RPP=296.159;RPPR=508.963;RPR=135;RUN=1;SAF=135;SAP=296.159;SAR=0;SRF=233;SRP=508.963;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:108:49,59:49:1928:59:2342:-178.429,0,-141.2 0/1:106:77,29:77:3107:29:1152:-72.0485,0,-247.778 0/1:109:76,33:76:3065:33:1287:-83.2814,0,-243.101 0/1:45:31,14:31:1217:14:559:-37.1066,0,-96.2558 dDocent_Contig_1932 200 . T C 64.2926 . AB=0.15625;ABP=35.8538;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=80;DPB=80;DPRA=2.07692;EPP=18.2106;EPPR=161.528;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=244;QR=2804;RO=73;RPL=7;RPP=18.2106;RPPR=161.528;RPR=0;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=161.528;SRR=73;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:22:20,2:20:773:2:56:0,-1.30594,-64.5818 0/0:12:12,0:12:462:0:0:0,-3.61236,-41.9266 0/1:32:27,5:27:1038:5:188:-7.65095,0,-84.0955 0/0:14:14,0:14:531:0:0:0,-4.21442,-48.1335 dDocent_Contig_1933 107 . N G 64.6112 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=4.89285;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=68;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:68:-6.45788,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_1934 9 . T C 314.17 . AB=0.183673;ABP=88.1852;AC=2;AF=0.25;AN=8;AO=18;CIGAR=1X;DP=157;DPB=157;DPRA=1.66102;EPP=42.0968;EPPR=296.222;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.9424;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.978417;PAO=0;PQA=0;PQR=0;PRO=0;QA=696;QR=5334;RO=139;RPL=0;RPP=42.0968;RPPR=304.845;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=138;SRP=296.222;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:44:38,6:38:1467:6:234:-8.18578,0,-119.06 0/1:54:42,12:42:1612:12:462:-25.675,0,-129.09 0/0:47:47,0:47:1792:0:0:0,-14.1484,-161.506 0/0:12:12,0:12:463:0:0:0,-3.61236,-42.0213 dDocent_Contig_1935 26 . C T 3432.07 . AB=0.492481;ABP=3.14091;AC=4;AF=0.5;AN=8;AO=131;CIGAR=1X;DP=266;DPB=266;DPRA=0;EPP=287.473;EPPR=296.159;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4751;QR=5325;RO=135;RPL=0;RPP=287.473;RPPR=296.159;RPR=131;RUN=1;SAF=131;SAP=287.473;SAR=0;SRF=135;SRP=296.159;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:132:62,70:62:2456:70:2536:-188.717,0,-181.444 0/1:88:44,44:44:1707:44:1579:-115.885,0,-127.353 0/1:25:16,9:16:647:9:338:-23.2437,0,-51.0383 0/1:21:13,8:13:515:8:298:-20.8518,0,-40.3727 dDocent_Contig_1936 52 . A G 137.662 . AB=0.163265;ABP=51.2702;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=153;DPB=153;DPRA=1.41346;EPP=20.3821;EPPR=317.874;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=323;QR=5720;RO=145;RPL=8;RPP=20.3821;RPPR=317.874;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=145;SRP=317.874;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:49:41,8:41:1646:8:323:-14.687,0,-133.621 0/0:59:59,0:59:2345:0:0:0,-17.7608,-211.214 0/0:30:30,0:30:1161:0:0:0,-9.0309,-104.766 0/0:15:15,0:15:568:0:0:0,-4.51545,-51.4419 dDocent_Contig_1937 1 . N G 146.928 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=6.27915;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=159;QR=0;RO=0;RPL=0;RPP=11.6962;RPPR=0;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:4:0,4:0:0:4:159:-14.692,-1.20412,0 ./.:.:.:.:.:.:.:. dDocent_Contig_1938 10 . G A 48.5728 . AB=0.142857;ABP=34.0313;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=108;DPB=108;DPRA=1.05;EPP=11.6962;EPPR=228.843;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=157;QR=4119;RO=104;RPL=0;RPP=11.6962;RPPR=228.843;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=104;SRP=228.843;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:31:31,0:31:1216:0:0:0,-9.33193,-109.708 0/0:43:43,0:43:1715:0:0:0,-12.9443,-154.572 0/1:28:24,4:24:953:4:157:-6.07908,0,-77.637 0/0:6:6,0:6:235:0:0:0,-1.80618,-21.519 dDocent_Contig_1940 9 . T C 3770.39 . AB=0.13438;ABP=668.326;AC=4;AF=0.5;AN=8;AO=77;CIGAR=2X8M1X5M1X6M1D1M1X2M2X;DP=573;DPB=557.7;DPRA=0;EPP=161.641;EPPR=504.62;GTI=0;LEN=1;MEANALT=7.5;MQM=54.2078;MQMR=60;NS=4;NUMALT=4;ODDS=0;PAIRED=0.987013;PAIREDR=0.991342;PAO=0;PQA=0;PQR=0;PRO=0;QA=2667;QR=9014;RO=231;RPL=0;RPP=170.214;RPPR=504.62;RPR=77;RUN=1;SAF=76;SAP=161.641;SAR=1;SRF=231;SRP=504.62;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:212:69,62,35,1,30:69:2687:62,35,1,30:2289,1337,39,1113:-166.425,0,-202.171,-77.4967,-111.139,-287.797,-183.99,-217.629,-295.127,-404.524,-96.1418,-129.783,-207.28,-313.771,-307.946 0|1:148:70,29,15,10,23:70:2736:29,15,10,23:1079,561,391,770:-67.2441,0,-216.224,-42.3747,-179.016,-262.809,-56.1651,-192.806,-235.177,-278.105,-27.0416,-163.677,-206.046,-219.836,-245.06 0|1:117:50,36,12,6,10:50:1937:36,12,6,10:1385,445,232,245:-98.6899,0,-148.319,-77.3288,-122.745,-232.852,-94.6825,-140.098,-217.407,-252.011,-96.0719,-141.483,-218.787,-236.139,-252.185 0|1:96:42,20,9,9,14:42:1654:20,9,9,14:766,315,346,539:-50.1693,0,-130.059,-37.2049,-110.471,-170.569,-34.4059,-107.674,-144.874,-167.774,-18.5588,-91.828,-129.028,-126.232,-150.423 dDocent_Contig_1941 158 . N G 443.613 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=12;CIGAR=1X;DP=12;DPB=12;DPRA=0;EPP=29.068;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=11.8243;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=489;QR=0;RO=0;RPL=12;RPP=29.068;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=29.068;SAR=12;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:12:0,12:0:0:12:489:-44.3613,-3.61236,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_1942 12 . T A 39.941 . AB=0.121212;ABP=44.1367;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=303;DPB=303;DPRA=0.366667;EPP=11.6962;EPPR=652.281;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.913;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=0.919732;PAO=0;PQA=0;PQR=0;PRO=0;QA=164;QR=12007;RO=299;RPL=0;RPP=11.6962;RPPR=652.281;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=299;SRP=652.281;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:106:106,0:106:4255:0:0:0,-31.9092,-382.89 0/0:104:104,0:104:4182:0:0:0,-31.3071,-376.282 0/0:60:60,0:60:2414:0:0:0,-18.0618,-217.408 0/1:33:29,4:29:1156:4:164:-5.21591,0,-94.3865 dDocent_Contig_1943 83 . C T 4337.86 . AB=0.485549;ABP=3.63789;AC=4;AF=0.5;AN=8;AO=168;CIGAR=2X;DP=346;DPB=346;DPRA=0;EPP=367.818;EPPR=387.361;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6026;QR=6331;RO=177;RPL=168;RPP=367.818;RPPR=387.361;RPR=0;RUN=1;SAF=168;SAP=367.818;SAR=0;SRF=177;SRP=387.361;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:99:67,32:67:2412:32:1143:-73.3779,0,-187.522 0|1:126:67,59:67:2376:59:2143:-155.2,0,-176.155 0|1:77:31,45:31:1107:45:1607:-121.664,0,-76.6884 0|1:44:12,32:12:436:32:1133:-89.0337,0,-26.3373 dDocent_Contig_1944 7 . T C 2502.49 . AB=0.194051;ABP=577.017;AC=4;AF=0.5;AN=8;AO=137;CIGAR=1X;DP=706;DPB=706;DPRA=0;EPP=300.502;EPPR=1234.24;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.992945;PAO=0;PQA=0;PQR=0;PRO=0;QA=5191;QR=21618;RO=567;RPL=0;RPP=300.502;RPPR=1234.24;RPR=137;RUN=1;SAF=137;SAP=300.502;SAR=0;SRF=567;SRP=1234.24;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:292:220,71:220:8421:71:2712:-156.312,0,-669.709 0/1:219:173,45:173:6573:45:1681:-85.5993,0,-525.532 0/1:126:114,12:114:4358:12:449:-2.82177,0,-354.357 0/1:69:60,9:60:2266:9:349:-10.9997,0,-183.39 dDocent_Contig_1945 107 . N G 622.613 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=20;CIGAR=1X;DP=20;DPB=20;DPRA=0;EPP=46.4397;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=58.2;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=675;QR=0;RO=0;RPL=0;RPP=46.4397;RPPR=0;RPR=20;RUN=1;SAF=0;SAP=46.4397;SAR=20;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1:0,1:0:0:1:35:-3.49863,-0.30103,0 1/1:3:0,3:0:0:3:105:-9.79616,-0.90309,0 1/1:13:0,13:0:0:13:438:-39.3114,-3.91339,0 1/1:3:0,3:0:0:3:97:-9.05057,-0.90309,0 dDocent_Contig_1947 7 . T G 83021.3 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=2868;CIGAR=1X;DP=2956;DPB=2956;DPRA=0;EPP=6230.79;EPPR=150.67;GTI=0;LEN=1;MEANALT=3;MQM=59.9993;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=93201;QR=922;RO=68;RPL=0;RPP=6230.79;RPPR=150.67;RPR=2868;RUN=1;SAF=2868;SAP=6230.79;SAR=0;SRF=68;SRP=150.67;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:940:22,912:22:298:912:30024:-2674.07,-254.371,0 1/1:876:15,855:15:181:855:27756:-2480.63,-245.608,0 1/1:596:14,576:14:202:576:18457:-1642.27,-159.404,0 1/1:544:17,525:17:241:525:16964:-1504.46,-141.565,0 dDocent_Contig_1948 98 . N A 164.644 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=5;CIGAR=2X;DP=5;DPB=6;DPRA=0;EPP=13.8677;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=172;QR=0;RO=0;RPL=5;RPP=13.8677;RPPR=0;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. 1|1:3:0,3:0:0:3:104:-9.70309,-0.90309,0 .:.:.:.:.:.:.:. 1|1:2:0,2:0:0:2:68:-6.45788,-0.60206,0 dDocent_Contig_1949 1 . N G 113.741 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.586;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:122:-11.3725,-0.90309,0 ./.:.:.:.:.:.:.:. dDocent_Contig_1950 98 . N C 426.277 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=15;CIGAR=1X;DP=15;DPB=15;DPRA=0;EPP=35.5824;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=464;QR=0;RO=0;RPL=15;RPP=35.5824;RPPR=0;RPR=0;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:52:-4.93967,-0.60206,0 1/1:13:0,13:0:0:13:412:-37.3854,-3.91339,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_1951 32 . A G 6735.48 . AB=0.531765;ABP=6.73501;AC=4;AF=0.5;AN=8;AO=226;CIGAR=1X;DP=425;DPB=425;DPRA=0;EPP=493.763;EPPR=435.133;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=8959;QR=7762;RO=199;RPL=0;RPP=493.763;RPPR=435.133;RPR=226;RUN=1;SAF=226;SAP=493.763;SAR=0;SRF=199;SRP=435.133;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:145:69,76:69:2704:76:2980:-224.646,0,-199.85 0/1:119:76,43:76:2968:43:1718:-119.016,0,-231.417 0/1:110:37,73:37:1419:73:2927:-230.406,0,-94.8593 0/1:51:17,34:17:671:34:1334:-104.969,0,-45.3691 dDocent_Contig_1952 50 . C T 9006.44 . AB=0.607843;ABP=54.5295;AC=4;AF=0.5;AN=8;AO=310;CIGAR=1X3M1X;DP=510;DPB=510;DPRA=0;EPP=676.167;EPPR=430.79;GTI=0;LEN=1;MEANALT=1.75;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=11765;QR=7699;RO=197;RPL=310;RPP=676.167;RPPR=430.79;RPR=0;RUN=1;SAF=310;SAP=676.167;SAR=0;SRF=197;SRP=430.79;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:127:76,50:76:2962:50:1918:-134.552,0,-228.399 0|1:176:56,120:56:2212:120:4581:-359.334,0,-146.285 0|1:138:39,97:39:1505:97:3678:-289.841,0,-94.4293 0|1:69:26,43:26:1020:43:1588:-122.406,0,-71.3309 dDocent_Contig_1953 11 . G A 3505.57 . AB=0.0625;ABP=136.013;AC=0;AF=0;AN=8;AO=5;CIGAR=1X3M1D9M;DP=366;DPB=365.571;DPRA=0;EPP=13.8677;EPPR=356.96;GTI=0;LEN=1;MEANALT=9;MQM=60;MQMR=60;NS=4;NUMALT=7;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=198;QR=6383;RO=163;RPL=0;RPP=13.8677;RPPR=356.96;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=163;SRP=356.96;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:104:43,0,1,3,10,1,44,1:43:1681:0,1,3,10,1,44,1:0,39,121,338,40,1705,16:-127.14,-140.084,-278.291,-136.878,-275.086,-274.785,-130.109,-268.317,-265.111,-267.414,-112.703,-250.908,-247.702,-240.933,-247.897,-136.789,-274.996,-271.79,-265.022,-247.612,-274.695,0,-138.233,-135.027,-128.257,-110.852,-134.937,-124.987,-138.949,-277.155,-273.949,-267.18,-249.771,-273.859,-137.097,-276.854 0|0:123:67,0,1,11,0,0,37,3:67:2626:0,1,11,0,0,37,3:0,36,432,0,0,1413,120:-95.7379,-115.907,-331.856,-112.97,-328.919,-328.618,-80.3743,-296.325,-293.388,-293.014,-115.907,-331.856,-328.919,-296.325,-331.856,-115.907,-331.856,-328.919,-296.325,-331.856,-331.856,0,-215.945,-213.008,-180.414,-215.945,-215.945,-204.807,-106.021,-321.971,-319.034,-286.44,-321.971,-321.971,-206.06,-321.068 0|0:80:30,5,3,3,0,0,29,5:30:1179:5,3,3,0,0,29,5:198,117,115,0,0,1106,200:-81.6787,-74.4124,-169.885,-81.0925,-161.773,-177.167,-81.272,-161.952,-168.632,-177.346,-90.7096,-171.39,-178.07,-178.249,-187.687,-90.7096,-171.39,-178.07,-178.249,-187.687,-187.687,0,-80.6767,-87.3566,-87.536,-96.9733,-96.9733,-88.2434,-74.2333,-154.914,-161.594,-161.773,-171.211,-171.211,-80.4977,-169.706 0|0:59:23,0,5,4,1,4,18,0:23:897:0,5,4,1,4,18,0:0,200,159,37,163,710,0:-51.4899,-58.4136,-132.141,-41.9376,-115.665,-114.16,-45.3222,-119.049,-102.574,-117.845,-55.3873,-129.114,-112.639,-116.023,-128.813,-44.9648,-118.693,-102.217,-105.601,-115.666,-117.488,0,-73.7261,-57.2499,-60.6345,-70.6997,-60.2772,-68.3076,-58.4136,-132.141,-115.665,-119.049,-129.114,-118.693,-73.7261,-132.141 dDocent_Contig_1954 9 . T G 4228.38 . AB=0.68599;ABP=65.2067;AC=4;AF=0.5;AN=8;AO=142;CIGAR=1X;DP=207;DPB=207;DPRA=0;EPP=311.359;EPPR=144.156;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5439;QR=2444;RO=65;RPL=0;RPP=311.359;RPPR=144.156;RPR=142;RUN=1;SAF=142;SAP=311.359;SAR=0;SRF=65;SRP=144.156;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:64:23,41:23:869:41:1575:-122.753,0,-59.2606 0/1:45:14,31:14:509:31:1182:-93.1299,0,-32.5937 0/1:63:15,48:15:578:48:1848:-147.602,0,-33.3978 0/1:35:13,22:13:488:22:834:-64.842,0,-33.7252 dDocent_Contig_1955 11 . A G 1606.62 . AB=0.176955;ABP=443.542;AC=4;AF=0.5;AN=8;AO=86;CIGAR=1X;DP=486;DPB=486;DPRA=0;EPP=189.757;EPPR=871.599;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3458;QR=16037;RO=400;RPL=0;RPP=189.757;RPPR=871.599;RPR=86;RUN=1;SAF=86;SAP=189.757;SAR=0;SRF=400;SRP=871.599;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:101:70,31:70:2829:31:1253:-82.6293,0,-224.297 0/1:182:165,17:165:6662:17:690:-7.64074,0,-544.473 0/1:112:92,20:92:3626:20:789:-37.6111,0,-292.659 0/1:91:73,18:73:2920:18:726:-38.2703,0,-235.499 dDocent_Contig_1956 8 . T A 7357.46 . AB=0.650919;ABP=78.3849;AC=4;AF=0.5;AN=8;AO=248;CIGAR=1X;DP=381;DPB=381;DPRA=0;EPP=541.535;EPPR=291.816;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=9501;QR=5093;RO=133;RPL=0;RPP=541.535;RPPR=291.816;RPR=248;RUN=1;SAF=248;SAP=541.535;SAR=0;SRF=133;SRP=291.816;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:111:50,61:50:1915:61:2333:-176.766,0,-139.181 0/1:133:54,79:54:2069:79:3023:-232.193,0,-146.404 0/1:97:17,80:17:660:80:3065:-246.812,0,-30.5372 0/1:40:12,28:12:449:28:1080:-85.4637,0,-28.711 dDocent_Contig_1957 20 . C A 241.138 . AB=0.184211;ABP=68.8402;AC=3;AF=0.375;AN=8;AO=14;CIGAR=1X;DP=82;DPB=82;DPRA=4.22222;EPP=33.4109;EPPR=150.67;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.714286;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=552;QR=2740;RO=68;RPL=0;RPP=33.4109;RPPR=150.67;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=68;SRP=150.67;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:20,4:20:806:4:152:-6.81989,0,-65.6297 0/1:31:23,8:23:918:8:318:-19.6529,0,-73.589 0/1:21:19,2:19:772:2:82:-1.45805,0,-63.4779 0/0:6:6,0:6:244:0:0:0,-1.80618,-22.3386 dDocent_Contig_1958 184 . G T 46.3687 . AB=0.173913;ABP=24.253;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=59;DPB=59;DPRA=1.91667;EPP=11.6962;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=135;QR=2190;RO=55;RPL=4;RPP=11.6962;RPPR=122.441;RPR=0;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=122.441;SRR=55;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:19,4:19:756:4:135:-5.55762,0,-61.4333 0/0:11:11,0:11:445:0:0:0,-3.31133,-40.4055 0/0:19:19,0:19:749:0:0:0,-5.71957,-67.733 0/0:6:6,0:6:240:0:0:0,-1.80618,-21.9751 dDocent_Contig_1961 11 . T C 4271.8 . AB=0.449848;ABP=10.1979;AC=4;AF=0.5;AN=8;AO=148;CIGAR=1X;DP=329;DPB=329;DPRA=0;EPP=324.388;EPPR=396.047;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5897;QR=7250;RO=181;RPL=0;RPP=324.388;RPPR=396.047;RPR=148;RUN=1;SAF=148;SAP=324.388;SAR=0;SRF=181;SRP=396.047;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:139:84,55:84:3382:55:2198:-156.149,0,-262.577 0/1:87:49,38:49:1956:38:1495:-108.601,0,-150.044 0/1:87:40,47:40:1595:47:1886:-143.752,0,-117.592 0/1:16:8,8:8:317:8:318:-24.1676,0,-24.0767 dDocent_Contig_1962 30 . C A 406.409 . AB=0.083871;ABP=236.142;AC=1;AF=0.125;AN=8;AO=13;CIGAR=2X;DP=155;DPB=155;DPRA=0;EPP=31.2394;EPPR=259.244;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0.983051;PAO=0;PQA=0;PQR=0;PRO=0;QA=514;QR=4711;RO=118;RPL=0;RPP=31.2394;RPPR=259.244;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=118;SRP=259.244;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:56:45,3,8:45:1801:3,8:117,321:-12.9106,-16.8425,-164.299,0,-138.753,-145.961 0|1:44:33,6,5:33:1308:6,5:240,199:-9.83681,0,-105.849,-3.38644,-91.2702,-109.535 0|0:35:26,3,6:26:1048:3,6:117,242:-12.1295,-10.3441,-95.8224,0,-76.7781,-84.5871 0|0:20:14,1,5:14:554:1,5:40,189:-11.2534,-12.1691,-57.4746,0,-42.2942,-44.0844 dDocent_Contig_1963 96 . C G 3856.7 . AB=0.745455;ABP=89.3559;AC=5;AF=0.625;AN=8;AO=149;CIGAR=1X;DP=192;DPB=192;DPRA=0;EPP=326.56;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=58.9302;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.813953;PAO=0;PQA=0;PQR=0;PRO=0;QA=4906;QR=1474;RO=43;RPL=149;RPP=326.56;RPPR=96.3836;RPR=0;RUN=1;SAF=149;SAP=326.56;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:86:11,75:11:382:75:2487:-198.196,0,-6.91491 0/1:50:22,28:22:746:28:921:-68.1408,0,-52.4032 1/1:27:1,26:1:34:26:839:-72.4112,-4.7289,0 0/1:29:9,20:9:312:20:659:-50.8887,0,-19.6863 dDocent_Contig_1964 45 . A C 190.093 . AB=0.0923077;ABP=96.8513;AC=3;AF=0.375;AN=8;AO=6;CIGAR=1X4M1X2M;DP=128;DPB=128;DPRA=0.77381;EPP=16.0391;EPPR=248.387;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=6.93889e-18;PAIRED=0;PAIREDR=0.840708;PAO=0;PQA=0;PQR=0;PRO=0;QA=221;QR=4349;RO=113;RPL=0;RPP=16.0391;RPPR=248.387;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=113;SRP=248.387;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:33:28,0,5:28:1092:0,5:0,181:-6.70185,-15.1307,-104.911,0,-90.1463,-88.6411 0|0:42:42,0,0:42:1626:0,0:0,0:0,-12.6433,-146.592,-12.6433,-146.592,-146.592 0|1:32:25,6,1:25:944:6,1:241,40:-12.3351,0,-75.5378,-16.5661,-74.0481,-93.6111 0|1:21:18,3,0:18:687:3,0:110,0:-3.93847,0,-55.8326,-9.35701,-56.7356,-65.7241 dDocent_Contig_1965 19 . A C 154.528 . AB=0.123077;ABP=163.432;AC=4;AF=0.5;AN=8;AO=16;CIGAR=1X;DP=130;DPB=130;DPRA=0;EPP=37.7539;EPPR=250.558;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=625;QR=4346;RO=114;RPL=0;RPP=37.7539;RPPR=250.558;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=114;SRP=250.558;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:47:40,7:40:1511:7:272:-10.6981,0,-122.11 0/1:58:53,5:53:2019:5:196:-0.555642,0,-164.48 0/1:13:10,3:10:385:3:119:-7.182,0,-31.0927 0/1:12:11,1:11:431:1:38:-0.184909,0,-35.5319 dDocent_Contig_1969 46 . A T 554.612 . AB=0;ABP=0;AC=0;AF=0;AN=8;AO=12;CIGAR=15M1X3M;DP=637;DPB=609.579;DPRA=1.8894;EPP=29.068;EPPR=1186.46;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=0.992661;PAO=0;PQA=0;PQR=0;PRO=0;QA=470;QR=21333;RO=545;RPL=0;RPP=29.068;RPPR=1186.46;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=545;SRP=1186.46;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:205:190,0,0,12:190:7431:0,0,12:0,0,470:0,-57.1957,-668.152,-57.1957,-668.152,-668.152,-18.5186,-629.508,-629.508,-625.895 0|0:215:153,36,14,0:153:6012:36,14,0:1263,521,0:-56.6831,0,-483.67,-60.1013,-451.872,-550.408,-102.741,-494.507,-554.623,-597.259 0|0:106:95,0,8,0:95:3700:0,8,0:0,310,0:0,-28.5978,-332.682,-3.14539,-307.218,-304.81,-28.5978,-332.682,-307.218,-332.682 0|0:111:107,0,0,0:107:4190:0,0,0:0,0,0:0,-32.2102,-376.804,-32.2102,-376.804,-376.804,-32.2102,-376.804,-376.804,-376.804 dDocent_Contig_1970 29 . A T 1127.06 . AB=0.191919;ABP=247.86;AC=4;AF=0.5;AN=8;AO=57;CIGAR=1X;DP=297;DPB=297;DPRA=0;EPP=126.784;EPPR=524.164;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2291;QR=9508;RO=240;RPL=0;RPP=126.784;RPPR=524.164;RPR=57;RUN=1;SAF=57;SAP=126.784;SAR=0;SRF=240;SRP=524.164;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:124:87,37:87:3420:37:1489:-96.9243,0,-270.52 0/1:89:77,12:77:3051:12:481:-16.8493,0,-247.877 0/1:42:38,4:38:1520:4:158:-1.9561,0,-124.401 0/1:42:38,4:38:1517:4:163:-2.41517,0,-124.114 dDocent_Contig_1971 126 . A G 198.508 . AB=0.266667;ABP=24.2907;AC=2;AF=0.25;AN=8;AO=12;CIGAR=1X;DP=100;DPB=100;DPRA=0.818182;EPP=29.068;EPPR=194.1;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=391;QR=2781;RO=88;RPL=0;RPP=29.068;RPPR=194.1;RPR=12;RUN=1;SAF=0;SAP=29.068;SAR=12;SRF=0;SRP=194.1;SRR=88;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:17,8:17:514:8:251:-15.3702,0,-39.0251 0/1:20:16,4:16:505:4:140:-6.92433,0,-39.7335 0/0:33:33,0:33:1049:0:0:0,-9.93399,-94.7018 0/0:22:22,0:22:713:0:0:0,-6.62266,-64.4727 dDocent_Contig_1972 135 . A T 6014.19 . AB=0.369637;ABP=92.4635;AC=4;AF=0.5;AN=8;AO=224;CIGAR=1X;DP=606;DPB=606;DPRA=0;EPP=489.42;EPPR=830.341;GTI=0;LEN=1;MEANALT=1.25;MQM=59.7054;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=8764;QR=15094;RO=381;RPL=0;RPP=489.42;RPPR=830.341;RPR=224;RUN=1;SAF=0;SAP=489.42;SAR=224;SRF=0;SRP=830.341;SRR=381;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:153:97,56:97:3837:56:2150:-147.615,0,-299.257 0/1:183:128,55:128:5123:55:2150:-138.577,0,-405.845 0/1:151:83,67:83:3254:67:2653:-193.35,0,-247.389 0/1:119:73,46:73:2880:46:1811:-127.367,0,-223.476 dDocent_Contig_1973 124 . A G 51.9894 . AB=0.153846;ABP=43.6001;AC=2;AF=0.25;AN=8;AO=6;CIGAR=1X;DP=73;DPB=73;DPRA=1.14706;EPP=16.0391;EPPR=148.499;GTI=0;LEN=1;MEANALT=1;MQM=55.5;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=208;QR=2350;RO=67;RPL=0;RPP=16.0391;RPPR=148.499;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=148.499;SRR=67;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:16,3:16:560:3:104:-3.95899,0,-45.0084 0/1:20:17,3:17:604:3:104:-3.68249,0,-48.6704 0/0:26:26,0:26:898:0:0:0,-7.82678,-81.1297 0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2673 dDocent_Contig_1974 81 . A C 6363.72 . AB=0.097561;ABP=233.716;AC=0;AF=0;AN=8;AO=16;CIGAR=2X;DP=481;DPB=481;DPRA=0;EPP=37.7539;EPPR=530.678;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=622;QR=9419;RO=243;RPL=16;RPP=37.7539;RPPR=530.678;RPR=0;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=243;SRP=530.678;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:164:82,16,66:82:3163:16,66:622,2586:-187.953,-161.529,-416.415,0,-208.594,-239.836 0|0:131:85,0,46:85:3313:0,46:0,1793:-122.159,-147.747,-420.024,0,-272.667,-258.819 0|0:104:42,0,62:42:1614:0,62:0,2432:-187.74,-200.383,-332.861,0,-132.865,-114.201 0|0:82:34,0,48:34:1329:0,48:0,1872:-144.01,-154.245,-263.496,0,-109.641,-95.1919 dDocent_Contig_1975 107 . N G 39.6176 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=21;MQMR=0;NS=1;NUMALT=1;ODDS=4.89285;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=72;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:72:-3.95847,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_1976 21 . C T 1241.06 . AB=0.351562;ABP=27.5072;AC=1;AF=0.125;AN=8;AO=45;CIGAR=1X;DP=295;DPB=295;DPRA=2.2994;EPP=100.727;EPPR=545.878;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1815;QR=10030;RO=250;RPL=0;RPP=100.727;RPPR=545.878;RPR=45;RUN=1;SAF=45;SAP=100.727;SAR=0;SRF=250;SRP=545.878;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:128:83,45:83:3319:45:1815:-125.027,0,-260.224 0/0:86:86,0:86:3452:0:0:0,-25.8886,-310.708 0/0:49:49,0:49:1981:0:0:0,-14.7505,-178.474 0/0:32:32,0:32:1278:0:0:0,-9.63296,-115.286 dDocent_Contig_1977 98 . N T 358.016 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=11;CIGAR=1X;DP=11;DPB=11;DPRA=0;EPP=26.8965;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=11.1312;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=394;QR=0;RO=0;RPL=11;RPP=26.8965;RPPR=0;RPR=0;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:11:0,11:0:0:11:394:-35.8016,-3.31133,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_1978 7 . T G 255.652 . AB=0.283333;ABP=27.4756;AC=1;AF=0.125;AN=8;AO=22;CIGAR=1X;DP=145;DPB=145;DPRA=1.96825;EPP=50.7827;EPPR=270.101;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=622;QR=4684;RO=123;RPL=0;RPP=50.7827;RPPR=270.101;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=123;SRP=270.101;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:60:43,17:43:1640:17:492:-26.486,0,-129.8 0/0:33:30,3:30:1143:3:74:0,-3.02869,-96.2656 0/0:31:29,2:29:1122:2:56:0,-4.01521,-95.9656 0/0:21:21,0:21:779:0:0:0,-6.32163,-70.4255 dDocent_Contig_1979 9 . T A 3747.54 . AB=0.317881;ABP=133.514;AC=4;AF=0.5;AN=8;AO=144;CIGAR=1X2M1X1M1X2M;DP=453;DPB=453;DPRA=0;EPP=315.702;EPPR=587.136;GTI=0;LEN=1;MEANALT=2.25;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5607;QR=10579;RO=269;RPL=0;RPP=315.702;RPPR=587.136;RPR=144;RUN=1;SAF=144;SAP=315.702;SAR=0;SRF=269;SRP=587.136;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:118:68,0,50:68:2680:0,50:0,1951:-140.286,-160.756,-381.244,0,-220.879,-205.828 0|1:169:100,26,42:100:3917:26,42:1007,1642:-104.893,-52.2757,-366.536,0,-239.369,-309.447 0|1:121:76,10,35:76:2997:10,35:387,1345:-87.5269,-78.6158,-322.194,0,-214.801,-236.053 0|1:45:25,2,17:25:985:2,17:67,669:-47.5377,-49.6434,-130.076,0,-75.6458,-75.95 dDocent_Contig_1980 86 . T C 419.671 . AB=0.225;ABP=81.8347;AC=3;AF=0.375;AN=8;AO=27;CIGAR=1X;DP=131;DPB=131;DPRA=3.63636;EPP=61.6401;EPPR=226.672;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=899;QR=3437;RO=103;RPL=27;RPP=61.6401;RPPR=226.672;RPR=0;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=103;SRP=226.672;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:47:33,13:33:1102:13:448:-26.6851,0,-85.5256 0/1:52:43,9:43:1426:9:286:-10.3954,0,-112.977 0/1:21:16,5:16:528:5:165:-8.8532,0,-41.5114 0/0:11:11,0:11:381:0:0:0,-3.31133,-34.6235 dDocent_Contig_1981 12 . C T 5165.83 . AB=0.0879121;ABP=539.913;AC=2;AF=0.25;AN=8;AO=32;CIGAR=1M1X;DP=364;DPB=364;DPRA=0;EPP=72.4974;EPPR=172.385;GTI=0;LEN=1;MEANALT=4.25;MQM=60;MQMR=60;NS=4;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=0.974359;PAO=0;PQA=0;PQR=0;PRO=0;QA=1305;QR=3111;RO=78;RPL=0;RPP=72.4974;RPPR=172.385;RPR=32;RUN=1;SAF=32;SAP=72.4974;SAR=0;SRF=78;SRP=172.385;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:61:20,19,1,19,2:20:797:19,1,19,2:765,41,775,76:-57.9241,-0.895881,-60.7991,-60.5605,-63.1344,-125.884,0,-2.57239,-62.2406,-59.9053,-57.7135,-60.2872,-119.953,-59.3934,-122.735 1|0:103:16,24,7,42,14:16:641:24,7,42,14:965,285,1693,563:-161.445,-86.739,-132.319,-142.751,-116.033,-193.449,-26.7179,0,-56.0121,-66.8798,-119.865,-93.1472,-149.159,-33.126,-168.456 1|0:114:15,22,13,60,3:15:589:22,13,60,3:880,530,2397,121:-216.952,-148.98,-190.794,-177.741,-153.689,-222.264,-24.0533,0,-28.76,-54.4266,-211.494,-187.442,-216.203,-62.514,-259.027 0|0:86:27,13,11,28,7:27:1084:13,11,28,7:516,449,1138,282:-85.7365,-51.3949,-136.799,-56.8166,-103.665,-142.824,0,-46.8489,-52.2706,-80.8901,-70.6215,-117.47,-122.892,-66.0758,-157.833 dDocent_Contig_1982 39 . A G 34.0502 . AB=0.114754;ABP=81.6461;AC=2;AF=0.25;AN=8;AO=7;CIGAR=1X;DP=166;DPB=166;DPRA=0.580952;EPP=18.2106;EPPR=348.274;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=249;QR=6301;RO=159;RPL=0;RPP=18.2106;RPPR=348.274;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=159;SRP=348.274;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:55:55,0:55:2177:0:0:0,-16.5566,-196.106 0/0:50:50,0:50:1990:0:0:0,-15.0515,-179.292 0/1:46:41,5:41:1610:5:201:-4.62314,0,-131.283 0/1:15:13,2:13:524:2:48:-0.0404431,0,-42.9895 dDocent_Contig_1983 1 . N G 110.966 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.586;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=119;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:119:-11.095,-0.90309,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_1984 1 . N G 77.8292 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=4.89285;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:82:-7.77968,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_1985 17 . C A 7529.04 . AB=0.397882;ABP=62.8818;AC=4;AF=0.5;AN=8;AO=263;CIGAR=1X2M1X;DP=661;DPB=661;DPRA=0;EPP=574.108;EPPR=736.968;GTI=0;LEN=1;MEANALT=2.25;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.991124;PAO=0;PQA=0;PQR=0;PRO=0;QA=10448;QR=13462;RO=338;RPL=0;RPP=574.108;RPPR=736.968;RPR=263;RUN=1;SAF=263;SAP=574.108;SAR=0;SRF=338;SRP=736.968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:218:130,77,10:130:5202:77,10:3059,389:-212.712,0,-405.358,-219.881,-396.573,-645.395 0|1:257:127,112,18:127:5065:112,18:4450,715:-328.12,0,-383.397,-307.491,-358.253,-719.184 0|1:135:57,55,23:57:2244:55,23:2188,906:-162.993,0,-168.036,-105.625,-110.065,-283.292 0|1:51:24,19,8:24:951:19,8:751,322:-54.5687,0,-72.5484,-35.2539,-51.7291,-111.119 dDocent_Contig_1987 121 . G A 66.8298 . AB=0.151515;ABP=37.8197;AC=2;AF=0.25;AN=8;AO=5;CIGAR=1X;DP=106;DPB=106;DPRA=0.452055;EPP=13.8677;EPPR=222.329;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=203;QR=3998;RO=101;RPL=0;RPP=13.8677;RPPR=222.329;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=222.329;SRR=101;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:46:46,0:46:1787:0:0:0,-13.8474,-161.033 0/0:27:27,0:27:1079:0:0:0,-8.12781,-97.3929 0/1:15:13,2:13:528:2:81:-3.17028,0,-43.3516 0/1:18:15,3:15:604:3:122:-5.95395,0,-49.2791 dDocent_Contig_1988 7 . T A 973.764 . AB=0.271605;ABP=76.4114;AC=4;AF=0.5;AN=8;AO=44;CIGAR=1X;DP=162;DPB=162;DPRA=0;EPP=98.5551;EPPR=257.073;GTI=0;LEN=1;MEANALT=1.25;MQM=59.4545;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.977273;PAIREDR=0.982906;PAO=0;PQA=0;PQR=0;PRO=0;QA=1675;QR=4496;RO=117;RPL=0;RPP=98.5551;RPPR=257.073;RPR=44;RUN=1;SAF=44;SAP=98.5551;SAR=0;SRF=117;SRP=257.073;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:16,15:16:616:15:567:-42.0372,0,-46.4475 0/1:54:44,9:44:1694:9:342:-14.7924,0,-136.376 0/1:36:29,7:29:1114:7:265:-12.9407,0,-89.7261 0/1:41:28,13:28:1072:13:501:-33.0956,0,-84.4433 dDocent_Contig_1989 31 . A C 156.066 . AB=0.269231;ABP=15.0369;AC=2;AF=0.25;AN=8;AO=7;CIGAR=1X;DP=67;DPB=67;DPRA=0.634146;EPP=18.2106;EPPR=133.299;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=279;QR=2364;RO=60;RPL=0;RPP=18.2106;RPPR=133.299;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:11,4:11:436:4:161:-10.3594,0,-35.0771 0/0:23:23,0:23:908:0:0:0,-6.92369,-82.0269 0/0:18:18,0:18:697:0:0:0,-5.41854,-63.0544 0/1:11:8,3:8:323:3:118:-7.69087,0,-26.1278 dDocent_Contig_1991 42 . C T 41.3821 . AB=0.129032;ABP=40.0654;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=229;DPB=229;DPRA=0.469697;EPP=11.6962;EPPR=491.592;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.986667;PAO=0;PQA=0;PQR=0;PRO=0;QA=159;QR=8539;RO=225;RPL=0;RPP=11.6962;RPPR=491.592;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=225;SRP=491.592;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:86:86,0:86:3275:0:0:0,-25.8886,-294.858 0/0:85:85,0:85:3199:0:0:0,-25.5875,-288.028 0/1:31:27,4:27:1036:4:159:-5.36002,0,-84.2103 0/0:27:27,0:27:1029:0:0:0,-8.12781,-92.9065 dDocent_Contig_1993 108 . T G 926.988 . AB=0.37037;ABP=22.7144;AC=4;AF=0.5;AN=8;AO=50;CIGAR=1X;DP=135;DPB=135;DPRA=0;EPP=111.584;EPPR=185.414;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1527;QR=2614;RO=84;RPL=0;RPP=111.584;RPPR=185.414;RPR=50;RUN=1;SAF=0;SAP=111.584;SAR=50;SRF=0;SRP=185.414;SRR=84;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:42:20,22:20:620:22:674:-48.3076,0,-43.4535 0/1:33:22,11:22:679:11:331:-20.1494,0,-51.4698 0/1:40:26,13:26:797:13:400:-24.47,0,-60.2015 0/1:20:16,4:16:518:4:122:-5.26131,0,-40.9105 dDocent_Contig_1994 19 . T C 5396.92 . AB=0.567308;ABP=15.2875;AC=4;AF=0.5;AN=8;AO=177;CIGAR=1X;DP=312;DPB=312;DPRA=0;EPP=387.361;EPPR=296.159;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.992593;PAO=0;PQA=0;PQR=0;PRO=0;QA=7092;QR=5435;RO=135;RPL=0;RPP=387.361;RPPR=296.159;RPR=177;RUN=1;SAF=177;SAP=387.361;SAR=0;SRF=135;SRP=296.159;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:101:31,70:31:1258:70:2815:-223.037,0,-83.0805 0/1:83:40,43:40:1584:43:1737:-131.559,0,-117.8 0/1:71:36,35:36:1459:35:1394:-104.336,0,-110.18 0/1:57:28,29:28:1134:29:1146:-86.2488,0,-85.1805 dDocent_Contig_1995 65 . A G 42.8085 . AB=0.153846;ABP=30.0702;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=131;DPB=131;DPRA=1.78723;EPP=16.0391;EPPR=274.444;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=221;QR=5007;RO=125;RPL=6;RPP=16.0391;RPPR=274.444;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=125;SRP=274.444;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:22,4:22:889:4:141:-5.20164,0,-72.4917 0/0:29:29,0:29:1152:0:0:0,-8.72987,-103.965 0/0:58:56,2:56:2241:2:80:0,-9.86795,-194.265 0/0:18:18,0:18:725:0:0:0,-5.41854,-65.5762 dDocent_Contig_1996 82 . T A 524.581 . AB=0.32;ABP=24.117;AC=2;AF=0.25;AN=8;AO=27;CIGAR=1X;DP=144;DPB=144;DPRA=1.32184;EPP=61.6401;EPPR=254.901;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=959;QR=4106;RO=116;RPL=27;RPP=61.6401;RPPR=254.901;RPR=0;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=116;SRP=254.901;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:29:29,0:29:1016:0:0:0,-8.72987,-91.7458 0/0:40:37,3:37:1306:3:108:0,-1.96603,-107.762 0/1:40:32,8:32:1136:8:283:-13.7712,0,-90.5047 0/1:35:18,16:18:648:16:568:-41.1306,0,-48.3306 dDocent_Contig_1997 97 . T G 8552.59 . AB=0.822785;ABP=145.998;AC=6;AF=0.75;AN=8;AO=298;CIGAR=1X;DP=329;DPB=329;DPRA=0;EPP=650.109;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.996644;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=10134;QR=1048;RO=31;RPL=298;RPP=650.109;RPPR=70.3259;RPR=0;RUN=1;SAF=298;SAP=650.109;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:104:22,82:22:758:82:2796:-220.588,0,-37.2325 1/1:92:1,91:1:12:91:3107:-278.675,-26.4948,0 1/1:79:2,77:2:70:77:2621:-229.501,-17.134,0 0/1:54:6,48:6:208:48:1610:-128.933,0,-2.80397 dDocent_Contig_1998 36 . C T 100.256 . AB=0.109091;ABP=149.012;AC=1;AF=0.125;AN=8;AO=12;CIGAR=1X;DP=291;DPB=291;DPRA=1.8232;EPP=29.068;EPPR=608.851;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=489;QR=11208;RO=279;RPL=0;RPP=29.068;RPPR=608.851;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=279;SRP=608.851;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:76:76,0:76:3064:0:0:0,-22.8783,-275.836 0/1:110:98,12:98:3947:12:489:-11.2474,0,-322.092 0/0:63:63,0:63:2525:0:0:0,-18.9649,-227.379 0/0:42:42,0:42:1672:0:0:0,-12.6433,-150.708 dDocent_Contig_1999 155 . A G 1435.24 . AB=0.402985;ABP=13.9649;AC=4;AF=0.5;AN=8;AO=54;CIGAR=1X;DP=134;DPB=134;DPRA=0;EPP=120.27;EPPR=176.728;GTI=0;LEN=1;MEANALT=1;MQM=46.8704;MQMR=46.575;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2134;QR=3199;RO=80;RPL=0;RPP=120.27;RPPR=176.728;RPR=54;RUN=1;SAF=0;SAP=120.27;SAR=54;SRF=0;SRP=176.728;SRR=80;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:35:25,10:25:1011:10:403:-25.3523,0,-75.8856 0/1:32:20,12:20:794:12:486:-33.5122,0,-60.7881 0/1:50:27,23:27:1074:23:906:-65.093,0,-80.0335 0/1:17:8,9:8:320:9:339:-25.0563,0,-23.4701 dDocent_Contig_2000 17 . T G 1994.45 . AB=0.492754;ABP=3.07324;AC=4;AF=0.5;AN=8;AO=68;CIGAR=1X;DP=138;DPB=138;DPRA=0;EPP=150.67;EPPR=155.013;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2724;QR=2816;RO=70;RPL=0;RPP=150.67;RPPR=155.013;RPR=68;RUN=1;SAF=68;SAP=150.67;SAR=0;SRF=70;SRP=155.013;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:57:28,29:28:1125:29:1166:-88.0574,0,-84.3713 0/1:36:24,12:24:971:12:480:-32.7134,0,-76.8521 0/1:26:9,17:9:353:17:672:-52.9827,0,-24.3027 0/1:19:9,10:9:367:10:406:-31.181,0,-27.6757 dDocent_Contig_2001 7 . T C 43.2172 . AB=0.108434;ABP=113.546;AC=2;AF=0.25;AN=8;AO=13;CIGAR=1X;DP=148;DPB=148;DPRA=3.19048;EPP=31.2394;EPPR=296.159;GTI=0;LEN=1;MEANALT=1;MQM=58.8462;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=494;QR=5127;RO=135;RPL=0;RPP=31.2394;RPPR=296.159;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=135;SRP=296.159;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:61:55,6:55:2106:6:228:-2.46519,0,-171.409 0/0:51:47,4:47:1792:4:149:0,-1.5802,-147.761 0/1:22:19,3:19:694:3:117:-4.28772,0,-56.1573 0/0:14:14,0:14:535:0:0:0,-4.21442,-48.4934 dDocent_Contig_2002 45 . C T 355.817 . AB=0.304348;ABP=18.305;AC=1;AF=0.125;AN=8;AO=20;CIGAR=1X;DP=167;DPB=167;DPRA=2.59649;EPP=46.4397;EPPR=322.217;GTI=0;LEN=1;MEANALT=1;MQM=59.3;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.993197;PAO=0;PQA=0;PQR=0;PRO=0;QA=773;QR=5931;RO=147;RPL=0;RPP=46.4397;RPPR=322.217;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=147;SRP=322.217;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:57:53,4:53:2145:4:132:0,-4.96386,-181.02 0/0:45:43,2:43:1743:2:82:0,-5.76667,-149.303 0/1:46:32,14:32:1278:14:559:-36.8035,0,-101.431 0/0:19:19,0:19:765:0:0:0,-5.71957,-69.1705 dDocent_Contig_2003 9 . C T 1154.81 . AB=0.210145;ABP=204.422;AC=3;AF=0.375;AN=8;AO=68;CIGAR=1X;DP=406;DPB=406;DPRA=0;EPP=150.67;EPPR=732.625;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2621;QR=12979;RO=336;RPL=0;RPP=150.67;RPPR=732.625;RPR=68;RUN=1;SAF=68;SAP=150.67;SAR=0;SRF=336;SRP=732.625;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:133:104,27:104:4005:27:1039:-53.9925,0,-320.712 0/1:77:63,14:63:2446:14:542:-25.9461,0,-197.16 0/0:130:120,10:120:4641:10:384:0,-4.21758,-382.808 0/1:66:49,17:49:1887:17:656:-39.5088,0,-150.206 dDocent_Contig_2004 40 . C A 82.6376 . AB=0.115385;ABP=136.639;AC=2;AF=0.25;AN=8;AO=12;CIGAR=1X;DP=189;DPB=189;DPRA=1.22353;EPP=29.068;EPPR=385.189;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=460;QR=6904;RO=176;RPL=0;RPP=29.068;RPPR=385.189;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=176;SRP=385.189;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:39:33,5:33:1295:5:181:-4.7934,0,-104.967 0/0:54:54,0:54:2126:0:0:0,-16.2556,-191.522 0/1:65:58,7:58:2288:7:279:-5.91399,0,-186.515 0/0:31:31,0:31:1195:0:0:0,-9.33193,-107.816 dDocent_Contig_2005 107 . N G 488.708 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=16;CIGAR=1X;DP=16;DPB=16;DPRA=0;EPP=37.7539;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=0.875;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=522;QR=0;RO=0;RPL=0;RPP=37.7539;RPPR=0;RPR=16;RUN=1;SAF=0;SAP=37.7539;SAR=16;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:4:0,4:0:0:4:105:-9.7099,-1.20412,0 1/1:4:0,4:0:0:4:137:-12.6682,-1.20412,0 1/1:4:0,4:0:0:4:140:-12.9449,-1.20412,0 1/1:4:0,4:0:0:4:140:-12.9449,-1.20412,0 dDocent_Contig_2006 70 . G T 85.3592 . AB=0.235294;ABP=13.3567;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=144;DPB=144;DPRA=0.401575;EPP=11.6962;EPPR=307.016;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=161;QR=5461;RO=140;RPL=4;RPP=11.6962;RPPR=307.016;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=140;SRP=307.016;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:51:51,0:51:1993:0:0:0,-15.3525,-179.583 0/0:50:50,0:50:1929:0:0:0,-15.0515,-173.816 0/0:26:26,0:26:1032:0:0:0,-7.82678,-93.1756 0/1:17:13,4:13:507:4:161:-9.75776,0,-40.8541 dDocent_Contig_2007 75 . A G 197.974 . AB=0.162162;ABP=76.3709;AC=2;AF=0.25;AN=8;AO=14;CIGAR=1X;DP=180;DPB=180;DPRA=0.604167;EPP=33.4109;EPPR=363.475;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=567;QR=6595;RO=166;RPL=14;RPP=33.4109;RPPR=363.475;RPR=0;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=166;SRP=363.475;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:44:35,9:35:1389:9:366:-20.0598,0,-112.026 0/0:64:64,0:64:2529:0:0:0,-19.2659,-227.761 0/0:42:40,2:40:1590:2:81:0,-4.95753,-135.655 0/1:30:27,3:27:1087:3:120:-2.15679,0,-89.0873 dDocent_Contig_2009 21 . G A 358.837 . AB=0.227848;ABP=53.8337;AC=4;AF=0.5;AN=8;AO=18;CIGAR=1X;DP=79;DPB=79;DPRA=0;EPP=42.0968;EPPR=135.47;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=702;QR=2358;RO=61;RPL=0;RPP=42.0968;RPPR=135.47;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=61;SRP=135.47;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:19,2:19:755:2:78:-1.08167,0,-61.9481 0/1:17:11,6:11:419:6:237:-16.5845,0,-32.9343 0/1:30:26,4:26:984:4:159:-5.66105,0,-79.813 0/1:11:5,6:5:200:6:228:-17.5671,0,-15.0671 dDocent_Contig_2010 56 . G A 69.4373 . AB=0.122807;ABP=73.4498;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=152;DPB=152;DPRA=1.8;EPP=18.2106;EPPR=317.874;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=274;QR=5784;RO=145;RPL=7;RPP=18.2106;RPPR=317.874;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=145;SRP=317.874;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:57:50,7:50:2015:7:274:-7.86455,0,-164.376 0/0:53:53,0:53:2119:0:0:0,-15.9546,-190.889 0/0:18:18,0:18:698:0:0:0,-5.41854,-63.1399 0/0:24:24,0:24:952:0:0:0,-7.22472,-85.9806 dDocent_Contig_2011 136 . G A 9180.91 . AB=0.541176;ABP=11.7728;AC=4;AF=0.5;AN=8;AO=322;CIGAR=1X;DP=595;DPB=595;DPRA=0;EPP=702.224;EPPR=595.822;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=12245;QR=9665;RO=273;RPL=0;RPP=702.224;RPPR=595.822;RPR=322;RUN=1;SAF=0;SAP=702.224;SAR=322;SRF=0;SRP=595.822;SRR=273;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:154:57,97:57:2003:97:3690:-285.858,0,-134.174 0/1:175:93,82:93:3284:82:3132:-229.36,0,-243.081 0/1:161:76,85:76:2690:85:3193:-239.051,0,-193.868 0/1:105:47,58:47:1688:58:2230:-169.313,0,-120.59 dDocent_Contig_2012 47 . G A 1939.61 . AB=0.299625;ABP=96.1234;AC=4;AF=0.5;AN=8;AO=80;CIGAR=1X;DP=267;DPB=267;DPRA=0;EPP=176.728;EPPR=409.076;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3095;QR=7144;RO=187;RPL=0;RPP=176.728;RPPR=409.076;RPR=80;RUN=1;SAF=80;SAP=176.728;SAR=0;SRF=187;SRP=409.076;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:96:53,43:53:2007:43:1673:-121.922,0,-151.959 0/1:103:75,28:75:2874:28:1083:-66.7598,0,-227.809 0/1:35:30,5:30:1147:5:181:-6.10239,0,-92.986 0/1:33:29,4:29:1116:4:158:-4.66666,0,-90.8003 dDocent_Contig_2013 98 . N G 982.322 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=32;CIGAR=1X;DP=32;DPB=32;DPRA=0;EPP=72.4974;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1069;QR=0;RO=0;RPL=32;RPP=72.4974;RPPR=0;RPR=0;RUN=1;SAF=32;SAP=72.4974;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:68:-6.45793,-0.60206,0 1/1:22:0,22:0:0:22:728:-65.8302,-6.62266,0 1/1:1:0,1:0:0:1:34:-3.39891,-0.30103,0 1/1:7:0,7:0:0:7:239:-21.8442,-2.10721,0 dDocent_Contig_2014 64 . T C 9295.94 . AB=0.588889;ABP=40.0701;AC=4;AF=0.5;AN=8;AO=318;CIGAR=1X;DP=540;DPB=540;DPRA=0;EPP=693.539;EPPR=485.077;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=2.77556e-17;PAIRED=0.996855;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=12189;QR=8474;RO=222;RPL=318;RPP=693.539;RPPR=485.077;RPR=0;RUN=1;SAF=318;SAP=693.539;SAR=0;SRF=222;SRP=485.077;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:225:97,128:97:3680:128:4909:-374.096,0,-263.589 0/1:142:63,79:63:2420:79:3018:-229.031,0,-175.26 0/1:107:35,72:35:1347:72:2753:-215.742,0,-89.3059 0/1:66:27,39:27:1027:39:1509:-116.214,0,-72.8714 dDocent_Contig_2015 12 . C T 1522.24 . AB=0.343195;ABP=39.103;AC=3;AF=0.375;AN=8;AO=58;CIGAR=1X2M1X;DP=182;DPB=182;DPRA=4.33333;EPP=128.956;EPPR=272.273;GTI=0;LEN=1;MEANALT=1;MQM=58.9655;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.965517;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2309;QR=4934;RO=124;RPL=0;RPP=128.956;RPPR=272.273;RPR=58;RUN=1;SAF=58;SAP=128.956;SAR=0;SRF=124;SRP=272.273;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:98:72,26:72:2857:26:1033:-62.827,0,-227.74 0|1:46:21,25:21:835:25:994:-75.1362,0,-61.6201 0|1:25:18,7:18:718:7:282:-18.2274,0,-57.4197 0|0:13:13,0:13:524:0:0:0,-3.91339,-47.5078 dDocent_Contig_2016 54 . A C 197.755 . AB=0.388889;ABP=4.9405;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=82;DPB=82;DPRA=0.84375;EPP=18.2106;EPPR=165.871;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.96;PAO=0;PQA=0;PQR=0;PRO=0;QA=286;QR=2945;RO=75;RPL=7;RPP=18.2106;RPPR=165.871;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=75;SRP=165.871;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:11,7:11:434:7:286:-20.6963,0,-33.9953 0/0:20:20,0:20:799:0:0:0,-6.0206,-72.2266 0/0:27:27,0:27:1055:0:0:0,-8.12781,-95.2468 0/0:17:17,0:17:657:0:0:0,-5.11751,-59.4594 dDocent_Contig_2017 7 . A T 4135.84 . AB=0.218077;ABP=484.189;AC=3;AF=0.375;AN=8;AO=152;CIGAR=3X;DP=697;DPB=697;DPRA=0;EPP=333.074;EPPR=923.715;GTI=0;LEN=1;MEANALT=2.25;MQM=60;MQMR=59.5495;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5782;QR=16051;RO=424;RPL=0;RPP=333.074;RPPR=923.715;RPR=152;RUN=1;SAF=152;SAP=333.074;SAR=0;SRF=424;SRP=923.715;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:286:183,72,31:183:6898:72,31:2714,1192:-167.317,0,-543.167,-124.542,-466.978,-680.057 0|0:258:143,46,69:143:5427:46,69:1761,2644:-173.953,-72.4821,-501.768,0,-298.614,-422.362 0|1:93:60,21,12:60:2280:21,12:801,463:-47.649,0,-180.658,-27.6856,-148.955,-211.057 0|1:60:38,13,8:38:1446:13,8:506,302:-30.154,0,-114.036,-16.8461,-93.1987,-132.38 dDocent_Contig_2018 84 . C T 440.261 . AB=0.289474;ABP=32.268;AC=3;AF=0.375;AN=8;AO=22;CIGAR=1X;DP=98;DPB=98;DPRA=1.15152;EPP=50.7827;EPPR=168.042;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=776;QR=2787;RO=76;RPL=22;RPP=50.7827;RPPR=168.042;RPR=0;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=76;SRP=168.042;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:22,5:22:806:5:185:-8.8822,0,-64.738 0/1:38:25,13:25:916:13:450:-29.3857,0,-71.3208 0/0:22:22,0:22:812:0:0:0,-6.62266,-73.4066 0/1:11:7,4:7:253:4:141:-9.72475,0,-19.8081 dDocent_Contig_2019 9 . T G 93396.6 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=3287;CIGAR=1X;DP=3512;DPB=3512;DPRA=0;EPP=7140.64;EPPR=441.648;GTI=0;LEN=1;MEANALT=2;MQM=38.0234;MQMR=42.9257;NS=4;NUMALT=1;ODDS=0;PAIRED=0.993307;PAIREDR=0.653465;PAO=0;PQA=0;PQR=0;PRO=0;QA=125462;QR=7744;RO=202;RPL=0;RPP=7140.64;RPPR=441.648;RPR=3287;RUN=1;SAF=3287;SAP=7140.64;SAR=0;SRF=202;SRP=441.648;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1220:77,1133:77:2948:1133:43289:-3167.21,-118.355,0 1/1:1159:94,1060:94:3612:1060:40467:-2913.86,-37.315,0 1/1:764:21,736:21:795:736:28045:-2172.02,-161.714,0 1/1:369:10,358:10:389:358:13661:-1085.86,-78.4731,0 dDocent_Contig_2020 8 . A T 2972.56 . AB=0.0347368;ABP=1789.23;AC=0;AF=0;AN=8;AO=33;CIGAR=2X;DP=950;DPB=950;DPRA=0;EPP=74.6689;EPPR=1290.75;GTI=0;LEN=1;MEANALT=4;MQM=11;MQMR=36.7188;NS=4;NUMALT=3;ODDS=0;PAIRED=0.393939;PAIREDR=0.748752;PAO=0;PQA=0;PQR=0;PRO=0;QA=1269;QR=23032;RO=601;RPL=0;RPP=74.6689;RPPR=1308.07;RPR=33;RUN=1;SAF=33;SAP=74.6689;SAR=0;SRF=599;SRP=1290.75;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:380:227,5,10,133:227:8697:5,10,133:191,390,5070:-178.128,-242.937,-759.881,-217.162,-732.092,-732.609,0,-514.918,-489.149,-478.407 0|0:311:196,23,16,70:196:7520:23,16,70:883,610,2708:-68.0407,-112.4,-535.631,-80.8384,-496.366,-506.21,0,-415.531,-383.997,-409.115 0|0:179:126,4,6,43:126:4815:4,6,43:156,234,1656:-39.7058,-76.1547,-344.25,-59.8077,-327.639,-327.322,0,-267.817,-251.489,-256.361 0|0:80:52,1,11,16:52:2000:1,11,16:39,427,591:-16.7877,-30.17,-148.572,0,-116.46,-115.421,-0.0755084,-116.461,-86.3183,-113.916 dDocent_Contig_2022 16 . T C 8802.83 . AB=0.233586;ABP=491.274;AC=4;AF=0.5;AN=8;AO=185;CIGAR=1X7M2I1M1X1M1X10M;DP=792;DPB=800.682;DPRA=0;EPP=404.733;EPPR=215.815;GTI=0;LEN=1;MEANALT=10;MQM=60;MQMR=60;NS=4;NUMALT=6;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7280;QR=3839;RO=98;RPL=0;RPP=404.733;RPPR=215.815;RPR=185;RUN=1;SAF=185;SAP=404.733;SAR=0;SRF=98;SRP=215.815;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:324:45,84,34,0,0,69,77:45:1765:84,34,0,0,69,77:3288,1310,0,0,2718,2971:-355.332,-98.8046,-218.666,-261.322,-136.397,-396.234,-368.878,-243.952,-406.469,-514.025,-368.878,-243.952,-406.469,-514.025,-514.025,-145.277,-20.3512,-182.869,-290.425,-290.425,-269.654,-124.926,0,-162.517,-270.073,-270.073,-46.4725,-246.894 1|0:251:42,66,19,8,1,48,50:42:1643:66,19,8,1,48,50:2556,705,318,40,1902,1927:-220.427,-23.1165,-138.337,-175.391,-100.526,-304.759,-206.888,-132.023,-284.296,-339.568,-229.775,-154.91,-307.184,-338.681,-364.563,-76.5155,-1.64963,-153.925,-185.422,-208.309,-197.155,-74.8653,0,-152.274,-183.771,-206.658,-53.3987,-194.902 1|0:113:8,15,11,11,0,45,20:8:317:15,11,11,0,45,20:581,427,422,0,1748,774:-178.683,-133.369,-154.947,-146.009,-124.38,-168.791,-146.457,-124.828,-137.468,-169.239,-181.092,-159.462,-172.102,-172.55,-207.185,-37.4773,-15.8487,-28.4887,-28.9366,-63.571,-50.0246,-117.52,-95.8911,-108.531,-108.979,-143.613,0,-137.593 1|0:104:3,20,20,4,6,23,21:3:114:20,20,4,6,23,21:775,755,153,225,912,810:-131.328,-68.5638,-71.8917,-70.3595,-16.0415,-73.6873,-119.676,-65.3575,-67.1532,-127.82,-113.804,-59.4857,-61.2815,-110.598,-121.346,-57.1586,-2.83913,-4.63561,-53.9523,-48.0804,-59.5835,-65.7246,-11.406,-13.2024,-62.5183,-56.6466,0,-68.7514 dDocent_Contig_2023 8 . A C 65.6905 . AB=0.18;ABP=47.4821;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X;DP=354;DPB=354;DPRA=0.493421;EPP=22.5536;EPPR=752.168;GTI=0;LEN=1;MEANALT=1;MQM=28.4444;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=337;QR=13236;RO=345;RPL=0;RPP=22.5536;RPPR=752.168;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=345;SRP=752.168;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:131:131,0:131:5025:0:0:0,-39.4349,-452.267 0/0:150:150,0:150:5772:0:0:0,-45.1545,-519.441 0/1:50:41,9:41:1558:9:337:-7.7909,0,-125.434 0/0:23:23,0:23:881:0:0:0,-6.92369,-79.61 dDocent_Contig_2024 11 . G A 14461 . AB=0.320866;ABP=144.601;AC=8;AF=1;AN=8;AO=163;CIGAR=2M1X1M;DP=508;DPB=659.5;DPRA=0;EPP=356.96;EPPR=46.4397;GTI=0;LEN=1;MEANALT=3.25;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6527;QR=791;RO=20;RPL=0;RPP=356.96;RPPR=46.4397;RPR=163;RUN=1;SAF=163;SAP=356.96;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:149:7,49,19,72:7:275:49,19,72:1908,763,2875:-368.845,-214.16,-222.029,-308.081,-173.908,-324.981,-134.177,0,-93.9223,-135.122 1|1:197:0,143,0,53:0:0:143,0,53:5694,0,2127:-644.253,-175.404,-132.357,-644.253,-175.404,-644.253,-469.005,0,-469.005,-453.051 1|1:69:7,41,0,21:7:278:41,0,21:1624,0,844:-178.222,-46.6676,-57.2112,-180.329,-69.5534,-203.216,-110.777,0,-133.664,-127.343 1|1:93:6,69,0,17:6:238:69,0,17:2740,0,681:-260.268,-36.5144,-35.3346,-262.074,-56.1057,-281.666,-205.971,0,-225.563,-220.445 dDocent_Contig_2026 113 . A G 186.175 . AB=0.3;ABP=13.4334;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X;DP=72;DPB=72;DPRA=2.14286;EPP=22.5536;EPPR=139.813;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=317;QR=2217;RO=63;RPL=0;RPP=22.5536;RPPR=139.813;RPR=9;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=139.813;SRR=63;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:12:12,0:12:431:0:0:0,-3.61236,-39.1307 0/1:30:21,9:21:731:9:317:-19.8394,0,-57.0792 0/0:23:23,0:23:807:0:0:0,-6.92369,-72.949 0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642 dDocent_Contig_2027 36 . T G 147.624 . AB=0.18;ABP=47.4821;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X;DP=181;DPB=181;DPRA=1.14504;EPP=22.5536;EPPR=376.504;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=341;QR=6840;RO=172;RPL=0;RPP=22.5536;RPPR=376.504;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=172;SRP=376.504;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:79:79,0:79:3163:0:0:0,-23.7814,-284.741 0/1:50:41,9:41:1612:9:341:-15.9842,0,-130.265 0/0:39:39,0:39:1547:0:0:0,-11.7402,-139.474 0/0:13:13,0:13:518:0:0:0,-3.91339,-46.9655 dDocent_Contig_2028 8 . T A 6954.22 . AB=0.878378;ABP=187.057;AC=6;AF=0.75;AN=8;AO=218;CIGAR=1X;DP=238;DPB=238;DPRA=0;EPP=476.391;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=8320;QR=770;RO=20;RPL=0;RPP=476.391;RPPR=46.4397;RPR=218;RUN=1;SAF=218;SAP=476.391;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:99:11,88:11:422:88:3355:-272.286,0,-8.53098 1/1:68:2,66:2:77:66:2504:-218.25,-13.1609,0 0/1:49:7,42:7:271:42:1614:-130.777,0,-10.006 1/1:22:0,22:0:0:22:847:-76.5528,-6.62266,0 dDocent_Contig_2029 52 . C G 369.312 . AB=0.565217;ABP=3.86001;AC=1;AF=0.125;AN=8;AO=13;CIGAR=1X;DP=67;DPB=67;DPRA=1.56818;EPP=31.2394;EPPR=120.27;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=497;QR=2060;RO=54;RPL=13;RPP=31.2394;RPPR=120.27;RPR=0;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:18:18,0:18:693:0:0:0,-5.41854,-62.7039 0/1:23:10,13:10:377:13:497:-38.153,0,-27.357 0/0:16:16,0:16:614:0:0:0,-4.81648,-55.5982 0/0:10:10,0:10:376:0:0:0,-3.0103,-34.1904 dDocent_Contig_2030 209 . N G 223.39 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=6;CIGAR=1X;DP=6;DPB=6;DPRA=0;EPP=16.0391;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=7.66544;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=244;QR=0;RO=0;RPL=6;RPP=16.0391;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:6:0,6:0:0:6:244:-22.3388,-1.80618,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_2031 7 . T C 1634.87 . AB=0.184959;ABP=427.154;AC=4;AF=0.5;AN=8;AO=91;CIGAR=1X;DP=492;DPB=492;DPRA=0;EPP=200.614;EPPR=814.031;GTI=0;LEN=1;MEANALT=1;MQM=59.3736;MQMR=57.2743;NS=4;NUMALT=1;ODDS=2.77556e-17;PAIRED=0.923077;PAIREDR=0.521197;PAO=0;PQA=0;PQR=0;PRO=0;QA=3511;QR=15379;RO=401;RPL=0;RPP=200.614;RPPR=873.771;RPR=91;RUN=1;SAF=91;SAP=200.614;SAR=0;SRF=394;SRP=814.031;SRR=7;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:201:166,35:166:6333:35:1348:-60.9653,0,-506.523 0/1:121:94,27:94:3609:27:1040:-57.4841,0,-278.225 0/1:90:73,17:73:2806:17:657:-32.3174,0,-219.884 0/1:80:68,12:68:2631:12:466:-18.2098,0,-207.301 dDocent_Contig_2032 13 . T A 102.181 . AB=0.171429;ABP=35.8306;AC=1;AF=0.125;AN=8;AO=6;CIGAR=2X;DP=108;DPB=108;DPRA=1.43836;EPP=16.0391;EPPR=224.5;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=240;QR=4088;RO=102;RPL=0;RPP=16.0391;RPPR=224.5;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=102;SRP=224.5;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:22:22,0:22:883:0:0:0,-6.62266,-79.78 0|0:34:34,0:34:1358:0:0:0,-10.235,-122.477 0|1:35:29,6:29:1166:6:240:-11.44,0,-94.6814 0|0:17:17,0:17:681:0:0:0,-5.11751,-61.6208 dDocent_Contig_2033 209 . N G 189.848 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=5;CIGAR=1X;DP=5;DPB=5;DPRA=0;EPP=13.8677;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=199;QR=0;RO=0;RPL=5;RPP=13.8677;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:122:-11.3725,-0.90309,0 ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:77:-7.30883,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_2034 16 . A C 159.604 . AB=0.210526;ABP=30.668;AC=2;AF=0.25;AN=8;AO=9;CIGAR=1X;DP=87;DPB=87;DPRA=0.782051;EPP=22.5536;EPPR=172.385;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=364;QR=3102;RO=78;RPL=0;RPP=22.5536;RPPR=172.385;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=78;SRP=172.385;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:26:26,0:26:1033:0:0:0,-7.82678,-93.2616 0/0:23:22,1:22:876:1:41:0,-2.82912,-75.0553 0/1:16:13,3:13:525:3:123:-6.64831,0,-42.7802 0/1:22:17,5:17:668:5:200:-11.7558,0,-53.8231 dDocent_Contig_2037 22 . G A 303.694 . AB=0.194805;ABP=65.3062;AC=1;AF=0.125;AN=8;AO=19;CIGAR=1X;DP=267;DPB=267;DPRA=1.60145;EPP=44.2683;EPPR=541.535;GTI=0;LEN=1;MEANALT=1;MQM=58.5263;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=767;QR=9958;RO=248;RPL=0;RPP=44.2683;RPPR=541.535;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=248;SRP=541.535;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:77:62,15:62:2478:15:611:-31.2902,0,-199.983 0/0:85:82,3:82:3313:3:116:0,-14.772,-287.392 0/0:59:58,1:58:2337:1:40:0,-13.7651,-206.486 0/0:46:46,0:46:1830:0:0:0,-13.8474,-164.907 dDocent_Contig_2039 133 . A G 48.4834 . AB=0.176471;ABP=18.4661;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=151;DPB=151;DPRA=0.380597;EPP=9.52472;EPPR=324.388;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=120;QR=5727;RO=148;RPL=0;RPP=9.52472;RPPR=324.388;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=324.388;SRR=148;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:38:38,0:38:1520:0:0:0,-11.4391,-137.044 0/0:71:71,0:71:2723:0:0:0,-21.3731,-245.225 0/0:25:25,0:25:941:0:0:0,-7.52575,-84.9854 0/1:17:14,3:14:543:3:120:-6.07018,0,-44.0945 dDocent_Contig_2040 14 . A G 26006.1 . AB=0.027451;ABP=497.604;AC=0;AF=0;AN=8;AO=20;CIGAR=1X2M1X;DP=876;DPB=876;DPRA=0;EPP=46.4397;EPPR=170.214;GTI=0;LEN=1;MEANALT=2.25;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.9;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=774;QR=3010;RO=77;RPL=0;RPP=46.4397;RPPR=170.214;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=77;SRP=170.214;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:245:20,1,224:20:775:1,224:37,8969:-736.609,-739.603,-802.968,-3.74733,-64.4045,0 0|0:255:45,7,203:45:1769:7,203:266,8099:-653.431,-645.163,-788.564,0,-123.708,-84.4119 0|0:230:7,3,219:7:272:3,219:116,8710:-758.569,-751.149,-772.596,-43.5292,-56.389,0 0|0:146:5,9,132:5:194:9,132:355,5232:-452.921,-425.217,-438.446,-23.7991,-10.5223,0 dDocent_Contig_2041 1 . N G 115.622 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=35;MQMR=0;NS=1;NUMALT=1;ODDS=6.27915;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=135;QR=0;RO=0;RPL=0;RPP=11.6962;RPPR=0;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:4:0,4:0:0:4:135:-11.5614,-1.20412,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_2042 29 . T C 19001.4 . AB=0.0238095;ABP=1822.91;AC=0;AF=0;AN=8;AO=22;CIGAR=1X1M1X;DP=1021;DPB=1024.33;DPRA=0;EPP=50.7827;EPPR=687.444;GTI=0;LEN=1;MEANALT=6.66667;MQM=46.6364;MQMR=59.5589;NS=4;NUMALT=2;ODDS=0;PAIRED=0.272727;PAIREDR=0.797583;PAO=0;PQA=0;PQR=0;PRO=0;QA=883;QR=13161;RO=331;RPL=0;RPP=50.7827;RPPR=653.96;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=327;SRP=687.444;SRR=4;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:327:90,17,205:90:3573:17,205:682,8081:-631.51,-605.017,-892.616,0,-239.146,-231.02 0|0:302:108,3,181:108:4286:3,181:121,7200:-555.564,-578.355,-930.267,0,-343.117,-298.351 0|0:295:105,2,174:105:4198:2,174:80,6873:-523.009,-548.131,-892.653,0,-338.646,-292.753 0|0:97:28,0,62:28:1104:0,62:0,2481:-195.548,-203.977,-294.806,0,-90.8306,-72.1668 dDocent_Contig_2043 35 . A C 726.221 . AB=0.35443;ABP=17.5509;AC=2;AF=0.25;AN=8;AO=30;CIGAR=1X1M1X2M5D1M;DP=137;DPB=123.364;DPRA=0;EPP=68.1545;EPPR=233.186;GTI=0;LEN=1;MEANALT=1.25;MQM=54.8667;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.766667;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1187;QR=4161;RO=106;RPL=0;RPP=68.1545;RPPR=233.186;RPR=30;RUN=1;SAF=30;SAP=68.1545;SAR=0;SRF=106;SRP=233.186;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:44:26,17:26:1034:17:674:-47.314,0,-80.0156 0|1:35:24,11:24:957:11:434:-27.7518,0,-75.9006 0|0:34:33,1:33:1275:1:39:0,-6.33846,-111.131 0|0:24:23,1:23:895:1:40:0,-3.22904,-76.8692 dDocent_Contig_2044 10 . T A 3664.13 . AB=0.0989011;ABP=130.173;AC=0;AF=0;AN=8;AO=9;CIGAR=1X1M1I2M;DP=205;DPB=238;DPRA=0;EPP=22.5536;EPPR=161.528;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=363;QR=2880;RO=73;RPL=0;RPP=22.5536;RPPR=161.528;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=73;SRP=161.528;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:91:34,9,48:34:1336:9,48:363,1850:-141.656,-121.966,-229.15,0,-79.9577,-95.4324 0|0:53:10,0,43:10:397:0,43:0,1685:-135.937,-138.948,-171.632,0,-33.0794,-20.1351 0|0:44:20,0,24:20:790:0,24:0,936:-71.2996,-77.3202,-142.331,0,-65.4033,-58.1786 0|0:17:9,0,8:9:357:0,8:0,303:-22.5103,-25.2196,-54.6163,0,-29.7835,-27.3753 dDocent_Contig_2046 68 . G A 97.9978 . AB=0.0789474;ABP=120.041;AC=4;AF=0.5;AN=8;AO=6;CIGAR=1M1X;DP=124;DPB=134;DPRA=0;EPP=16.0391;EPPR=237.529;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=231;QR=4284;RO=108;RPL=6;RPP=16.0391;RPPR=237.529;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=108;SRP=237.529;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:48:42,6,0:42:1687:6,0:239,0:-7.43594,0,-137.607,-20.0792,-139.413,-159.094 0|1:43:39,0,4:39:1529:0,4:0,152:-1.10523,-12.8454,-138.584,0,-126.12,-124.916 0|1:21:17,3,1:17:676:3,1:117,40:-4.49222,0,-54.7501,-6.31217,-52.358,-61.673 0|1:12:10,1,1:10:392:1,1:40,39:-0.289737,0,-31.934,-0.0991147,-29.0293,-32.0241 dDocent_Contig_2047 170 . A G 90.8372 . AB=0.172414;ABP=30.0414;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=71;DPB=71;DPRA=2.07143;EPP=13.8677;EPPR=144.156;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=204;QR=2227;RO=65;RPL=5;RPP=13.8677;RPPR=144.156;RPR=0;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=144.156;SRR=65;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:12:12,0:12:404:0:0:0,-3.61236,-36.6748 0/1:29:23,5:23:791:5:204:-10.1806,0,-62.9763 0/0:22:22,0:22:779:0:0:0,-6.62266,-70.4199 0/0:8:8,0:8:253:0:0:0,-2.40824,-23.0749 dDocent_Contig_2048 10 . T C 64.3577 . AB=0.16;ABP=28.1125;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X;DP=192;DPB=192;DPRA=0.68254;EPP=22.5536;EPPR=310.588;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.8852;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=0.928962;PAO=0;PQA=0;PQR=0;PRO=0;QA=366;QR=6899;RO=183;RPL=0;RPP=22.5536;RPPR=400.39;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=172;SRP=310.588;SRR=11;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:63:63,0:63:2395:0:0:0,-18.9649,-215.746 0/0:69:65,4:65:2430:4:162:0,-5.80432,-203.94 0/0:35:34,1:34:1291:1:41:0,-6.44148,-112.278 0/1:25:21,4:21:783:4:163:-7.53268,0,-63.2619 dDocent_Contig_2049 51 . A C 6532.94 . AB=0.815668;ABP=190.828;AC=5;AF=0.625;AN=8;AO=204;CIGAR=1X;DP=245;DPB=245;DPRA=0;EPP=445.991;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=8058;QR=1641;RO=41;RPL=204;RPP=445.991;RPPR=92.0407;RPR=0;RUN=1;SAF=204;SAP=445.991;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:80:11,69:11:442:69:2729:-221.647,0,-16.0525 0/1:84:17,67:17:684:67:2654:-213.706,0,-36.6043 0/1:53:12,41:12:477:41:1610:-129.188,0,-27.3271 1/1:28:1,27:1:38:27:1065:-92.3443,-4.63157,0 dDocent_Contig_2050 86 . G A 173.901 . AB=0.25;ABP=24.725;AC=3;AF=0.375;AN=8;AO=10;CIGAR=1X;DP=54;DPB=54;DPRA=0.952381;EPP=24.725;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.9;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=344;QR=1591;RO=44;RPL=10;RPP=24.725;RPPR=98.5551;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:14:14,0:14:495:0:0:0,-4.21442,-44.8841 0/1:17:12,5:12:441:5:163:-9.87218,0,-34.9173 0/1:11:10,1:10:367:1:37:-0.386499,0,-30.0669 0/1:12:8,4:8:288:4:144:-9.70126,0,-22.655 dDocent_Contig_2051 95 . C A 5655.95 . AB=0.661836;ABP=50.1008;AC=5;AF=0.625;AN=8;AO=215;CIGAR=1X;DP=293;DPB=293;DPRA=0;EPP=469.877;EPPR=172.385;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.995349;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7286;QR=2651;RO=78;RPL=215;RPP=469.877;RPPR=172.385;RPR=0;RUN=1;SAF=215;SAP=469.877;SAR=0;SRF=78;SRP=172.385;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:71:9,62:9:312:62:2101:-167.988,0,-7.04307 1/1:86:8,78:8:278:78:2676:-215.739,-0.530572,0 0/1:91:39,52:39:1321:52:1741:-129.576,0,-91.791 0/1:45:22,23:22:740:23:768:-55.8823,0,-53.3669 dDocent_Contig_2052 97 . C T 58.7533 . AB=0.181818;ABP=32.0291;AC=3;AF=0.375;AN=8;AO=10;CIGAR=1X;DP=74;DPB=74;DPRA=0;EPP=24.725;EPPR=133.434;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.953125;PAO=0;PQA=0;PQR=0;PRO=0;QA=326;QR=2190;RO=64;RPL=10;RPP=24.725;RPPR=141.985;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=63;SRP=133.434;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:11,2:11:384:2:55:-1.31027,0,-30.9822 0/0:41:37,4:37:1254:4:130:0,-0.320932,-101.139 0/1:10:9,1:9:312:1:35:-0.488329,0,-25.4059 0/1:10:7,3:7:240:3:106:-6.87886,0,-18.9248 dDocent_Contig_2053 104 . N A 191.513 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=6;CIGAR=4X;DP=6;DPB=6;DPRA=0;EPP=16.0391;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=7.37776;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=209;QR=0;RO=0;RPL=0;RPP=16.0391;RPPR=0;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. 1|1:6:0,6:0:0:6:209:-19.1511,-1.80618,0 .:.:.:.:.:.:.:. dDocent_Contig_2054 40 . C T 588.105 . AB=0.123874;ABP=548.598;AC=3;AF=0.375;AN=8;AO=69;CIGAR=1X1M1X;DP=698;DPB=698;DPRA=0;EPP=152.842;EPPR=1340.64;GTI=0;LEN=1;MEANALT=2.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2674;QR=23740;RO=616;RPL=0;RPP=152.842;RPPR=1340.64;RPR=69;RUN=1;SAF=69;SAP=152.842;SAR=0;SRF=616;SRP=1340.64;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:207:182,19:182:6974:19:736:-5.70516,0,-566.648 0|0:254:240,14:240:9259:14:538:0,-27.7,-784.197 0|1:130:103,23:103:3985:23:905:-43.4764,0,-320.432 0|1:107:91,13:91:3522:13:495:-13.2208,0,-285.415 dDocent_Contig_2055 36 . G T 529.525 . AB=0.514286;ABP=3.07234;AC=1;AF=0.125;AN=8;AO=18;CIGAR=1X;DP=207;DPB=207;DPRA=0.610465;EPP=42.0968;EPPR=413.419;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.994709;PAO=0;PQA=0;PQR=0;PRO=0;QA=714;QR=7513;RO=189;RPL=0;RPP=42.0968;RPPR=413.419;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=189;SRP=413.419;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:81:81,0:81:3183:0:0:0,-24.3834,-286.553 0/1:35:17,18:17:687:18:714:-54.0494,0,-51.6237 0/0:60:60,0:60:2407:0:0:0,-18.0618,-216.785 0/0:31:31,0:31:1236:0:0:0,-9.33193,-111.514 dDocent_Contig_2056 83 . C A 61.118 . AB=0.116883;ABP=101.178;AC=2;AF=0.25;AN=8;AO=11;CIGAR=1X;DP=154;DPB=154;DPRA=0.833333;EPP=26.8965;EPPR=313.531;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=419;QR=5474;RO=143;RPL=11;RPP=26.8965;RPPR=313.531;RPR=0;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=143;SRP=313.531;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:58:51,7:51:1967:7:263:-6.56885,0,-159.809 0/0:44:44,0:44:1698:0:0:0,-13.2453,-153.078 0/0:33:31,2:31:1187:2:78:0,-2.53052,-99.7222 0/1:19:17,2:17:622:2:78:-1.6839,0,-50.5846 dDocent_Contig_2057 18 . G A 914.455 . AB=0.313043;ABP=37.9238;AC=3;AF=0.375;AN=8;AO=36;CIGAR=1X;DP=129;DPB=129;DPRA=2.7381;EPP=81.1833;EPPR=204.957;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1429;QR=3684;RO=93;RPL=0;RPP=81.1833;RPPR=204.957;RPR=36;RUN=1;SAF=36;SAP=81.1833;SAR=0;SRF=93;SRP=204.957;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:14:14,0:14:530:0:0:0,-4.21442,-48.0237 0/1:49:37,12:37:1484:12:475:-28.3429,0,-119.052 0/1:50:31,19:31:1220:19:754:-53.1309,0,-95.018 0/1:16:11,5:11:450:5:200:-13.5634,0,-36.0393 dDocent_Contig_2058 10 . G A 39.6787 . AB=0.116279;ABP=58.0041;AC=1;AF=0.125;AN=8;AO=17;CIGAR=1X3M2X;DP=328;DPB=328;DPRA=1.22857;EPP=39.9253;EPPR=667.481;GTI=0;LEN=1;MEANALT=2.66667;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=672;QR=11358;RO=306;RPL=0;RPP=39.9253;RPPR=667.481;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=306;SRP=667.481;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:70:70,0:70:2612:0:0:0,-21.0721,-235.295 0|0:138:125,10:125:4639:10:396:0,-4.94608,-381.624 0|0:77:74,2:74:2731:2:79:0,-15.5789,-238.596 0|1:43:37,5:37:1376:5:197:-5.06473,0,-111.085 dDocent_Contig_2059 30 . G T 5472.51 . AB=0.371963;ABP=79.1904;AC=4;AF=0.5;AN=8;AO=199;CIGAR=1X;DP=535;DPB=535;DPRA=0;EPP=435.133;EPPR=732.625;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.994975;PAIREDR=0.946429;PAO=0;PQA=0;PQR=0;PRO=0;QA=7917;QR=13500;RO=336;RPL=0;RPP=435.133;RPPR=732.625;RPR=199;RUN=1;SAF=199;SAP=435.133;SAR=0;SRF=336;SRP=732.625;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:193:102,91:102:4094:91:3593:-265.291,0,-310.321 0/1:178:118,60:118:4760:60:2387:-161.397,0,-374.705 0/1:91:59,32:59:2386:32:1295:-89.4168,0,-187.49 0/1:73:57,16:57:2260:16:642:-36.1364,0,-181.58 dDocent_Contig_2060 18 . G T 367.274 . AB=0.311111;ABP=16.956;AC=1;AF=0.125;AN=8;AO=14;CIGAR=1X;DP=228;DPB=228;DPRA=0.737705;EPP=33.4109;EPPR=467.705;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.990654;PAO=0;PQA=0;PQR=0;PRO=0;QA=567;QR=8560;RO=214;RPL=0;RPP=33.4109;RPPR=467.705;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=214;SRP=467.705;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:50:50,0:50:2004:0:0:0,-15.0515,-180.549 0/1:45:31,14:31:1250:14:567:-37.8243,0,-99.2185 0/0:66:66,0:66:2640:0:0:0,-19.868,-237.723 0/0:67:67,0:67:2666:0:0:0,-20.169,-240.061 dDocent_Contig_2061 34 . T A 978.307 . AB=0.264;ABP=63.4815;AC=1;AF=0.125;AN=8;AO=33;CIGAR=1M1X4M9D2M1X1M1X2M1X;DP=375;DPB=370.957;DPRA=1.32275;EPP=74.6689;EPPR=615.366;GTI=0;LEN=1;MEANALT=8;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1258;QR=11044;RO=282;RPL=0;RPP=74.6689;RPPR=615.366;RPR=33;RUN=1;SAF=33;SAP=74.6689;SAR=0;SRF=282;SRP=615.366;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:125:65,33,0,20:65:2554:33,0,20:1258,0,784:-83.6357,0,-200.16,-103.203,-210.094,-313.284,-38.7242,-145.623,-248.814,-242.793 0|0:150:133,0,11,0:133:5196:0,11,0:0,428,0:0,-40.037,-467.227,-4.79757,-432.053,-428.741,-40.037,-467.227,-432.053,-467.227 0|0:61:45,0,10,1:45:1767:0,10,1:0,366,37:-16.3888,-29.9351,-175.297,0,-145.394,-142.383,-26.9067,-172.27,-142.367,-171.969 0|0:39:39,0,0,0:39:1527:0,0,0:0,0,0:0,-11.7402,-137.683,-11.7402,-137.683,-137.683,-11.7402,-137.683,-137.683,-137.683 dDocent_Contig_2062 28 . T C 4268.6 . AB=0.555556;ABP=9.76599;AC=4;AF=0.5;AN=8;AO=140;CIGAR=1X;DP=252;DPB=252;DPRA=0;EPP=307.016;EPPR=246.215;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5630;QR=4495;RO=112;RPL=0;RPP=307.016;RPPR=246.215;RPR=140;RUN=1;SAF=140;SAP=307.016;SAR=0;SRF=112;SRP=246.215;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:75:31,44:31:1242:44:1770:-136.936,0,-89.4695 0/1:70:33,37:33:1329:37:1478:-112.196,0,-98.7936 0/1:54:31,23:31:1238:23:928:-67.566,0,-95.435 0/1:53:17,36:17:686:36:1454:-115.151,0,-46.1145 dDocent_Contig_2063 50 . A G 62.3697 . AB=0.135135;ABP=45.7942;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=128;DPB=128;DPRA=0.684211;EPP=16.0391;EPPR=267.93;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.97541;PAO=0;PQA=0;PQR=0;PRO=0;QA=241;QR=4763;RO=122;RPL=6;RPP=16.0391;RPPR=267.93;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=122;SRP=267.93;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:34:34,0:34:1332:0:0:0,-10.235,-120.132 0/0:42:42,0:42:1585:0:0:0,-12.6433,-142.887 0/1:37:32,5:32:1285:5:201:-7.33257,0,-104.78 0/0:15:14,1:14:561:1:40:0,-0.519771,-46.8358 dDocent_Contig_2064 121 . G A 44.8486 . AB=0.214286;ABP=12.937;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=68;DPB=68;DPRA=1;EPP=11.6962;EPPR=141.985;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=58.75;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=140;QR=2164;RO=64;RPL=0;RPP=11.6962;RPPR=141.985;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=141.985;SRR=64;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:11,0:11:379:0:0:0,-3.31133,-34.4422 0/0:23:23,0:23:786:0:0:0,-6.92369,-71.0564 0/1:14:11,3:11:355:3:105:-5.58174,0,-28.0464 0/0:20:19,1:19:644:1:35:0,-2.52197,-52.9389 dDocent_Contig_2065 16 . T C 1185.14 . AB=0.148571;ABP=566.191;AC=3;AF=0.375;AN=8;AO=82;CIGAR=1X;DP=604;DPB=604;DPRA=0;EPP=181.071;EPPR=1136.52;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.414634;PAIREDR=0.570881;PAO=0;PQA=0;PQR=0;PRO=0;QA=3263;QR=19033;RO=522;RPL=0;RPP=181.071;RPPR=1136.52;RPR=82;RUN=1;SAF=82;SAP=181.071;SAR=0;SRF=522;SRP=1136.52;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:178:158,20:158:5746:20:788:-17.6564,0,-463.591 0/1:162:124,38:124:4516:38:1510:-87.3742,0,-357.757 0/1:185:165,20:165:6085:20:805:-17.0756,0,-491.931 0/0:79:75,4:75:2686:4:160:0,-8.99794,-227.169 dDocent_Contig_2066 66 . A G 77.2407 . AB=0.136364;ABP=53.5464;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X;DP=160;DPB=160;DPRA=1.85714;EPP=22.5536;EPPR=330.903;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=363;QR=5954;RO=151;RPL=9;RPP=22.5536;RPPR=330.903;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=151;SRP=330.903;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:34:34,0:34:1343:0:0:0,-10.235,-121.132 0/0:60:57,3:57:2258:3:122:0,-6.68931,-192.018 0/1:44:38,6:38:1505:6:241:-8.82098,0,-122.452 0/0:22:22,0:22:848:0:0:0,-6.62266,-76.6264 dDocent_Contig_2067 1 . N G 76.9006 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=4.60517;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:81:-7.68573,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_2068 28 . T G 1767.24 . AB=0.0551724;ABP=750.641;AC=3;AF=0.375;AN=8;AO=29;CIGAR=1X7M;DP=553;DPB=553;DPRA=0;EPP=65.983;EPPR=845.542;GTI=0;LEN=1;MEANALT=5.75;MQM=60;MQMR=60;NS=4;NUMALT=4;ODDS=0;PAIRED=0.896552;PAIREDR=0.948454;PAO=0;PQA=0;PQR=0;PRO=0;QA=1095;QR=15056;RO=388;RPL=0;RPP=65.983;RPPR=845.542;RPR=29;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=388;SRP=845.542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:187:114,11,39,13,0:114:4453:11,39,13,0:411,1454,483,0:-84.7125,-85.3762,-448.145,0,-332.43,-354.343,-79.5064,-411.934,-326.56,-441.673,-119.03,-451.457,-366.083,-445.587,-485.11 0|1:186:137,0,41,3,2:137:5294:0,41,3,2:0,1509,117,80:-82.1138,-123.355,-558.154,0,-434.777,-422.435,-113.736,-548.537,-425.159,-547.633,-116.764,-551.564,-428.187,-541.946,-550.962 0|0:118:99,0,9,5,0:99:3859:0,9,5,0:0,327,191,0:0,-29.802,-347,-3.10881,-320.297,-317.588,-14.1281,-331.328,-304.626,-329.823,-29.802,-347,-320.297,-331.328,-347 0|1:62:38,0,7,8,4:38:1450:0,7,8,4:0,266,304,159:-13.4895,-24.9287,-143.872,-3.11561,-122.057,-119.949,0,-118.941,-97.1257,-116.532,-11.8356,-130.78,-108.965,-105.849,-129.576 dDocent_Contig_2069 62 . C T 8402.49 . AB=0.0453515;ABP=794.79;AC=0;AF=0;AN=8;AO=20;CIGAR=3M1X3M1X;DP=441;DPB=443.75;DPRA=0;EPP=46.4397;EPPR=298.331;GTI=0;LEN=1;MEANALT=3.5;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=0.45;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=764;QR=5134;RO=136;RPL=20;RPP=46.4397;RPPR=298.331;RPR=0;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=136;SRP=298.331;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:103:43,0,8,52:43:1612:0,8,52:0,305,2094:-159.658,-172.602,-304.617,-147.589,-279.602,-277.194,0,-132.02,-107.004,-116.367 0|0:155:58,0,1,95:58:2204:0,1,95:0,40,3741:-290.277,-307.737,-488.471,-304.441,-485.176,-484.875,0,-180.74,-177.444,-152.142 0|0:103:18,7,8,68:18:675:7,8,68:275,301,2737:-220.167,-202.967,-256.141,-200.926,-233.588,-253.799,0,-32.6583,-30.62,-34.81 0|0:80:17,4,3,55:17:643:4,3,55:154,118,2189:-175.138,-167.611,-219.109,-170.549,-210.606,-222.347,0,-40.0663,-43.0035,-36.156 dDocent_Contig_2070 1 . N G 76.9006 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=4.60517;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:81:-7.68573,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_2071 117 . C T 111.68 . AB=0.157143;ABP=74.4828;AC=2;AF=0.25;AN=8;AO=18;CIGAR=1X;DP=211;DPB=211;DPRA=0.68599;EPP=42.0968;EPPR=422.104;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.989637;PAO=0;PQA=0;PQR=0;PRO=0;QA=604;QR=6490;RO=193;RPL=0;RPP=42.0968;RPPR=422.104;RPR=18;RUN=1;SAF=0;SAP=42.0968;SAR=18;SRF=0;SRP=422.104;SRR=193;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:69:69,0:69:2335:0:0:0,-20.7711,-210.414 0/0:72:65,7:65:2158:7:229:0,-0.744384,-173.555 0/1:43:38,5:38:1274:5:165:-2.23077,0,-102.013 0/1:27:21,6:21:723:6:210:-11.1147,0,-57.2629 dDocent_Contig_2072 1 . N G 817.177 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=23;CIGAR=1X;DP=23;DPB=23;DPRA=0;EPP=52.9542;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=0.130435;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=884;QR=0;RO=0;RPL=0;RPP=52.9542;RPPR=0;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:114:-10.6301,-0.90309,0 1/1:8:0,8:0:0:8:319:-29.0769,-2.40824,0 1/1:8:0,8:0:0:8:292:-26.6192,-2.40824,0 1/1:4:0,4:0:0:4:159:-14.692,-1.20412,0 dDocent_Contig_2073 29 . T A 8843.68 . AB=0.717557;ABP=164.578;AC=4;AF=0.5;AN=8;AO=282;CIGAR=1X;DP=393;DPB=393;DPRA=0;EPP=615.366;EPPR=244.044;GTI=0;LEN=1;MEANALT=1;MQM=58.6525;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=11197;QR=4436;RO=111;RPL=0;RPP=615.366;RPPR=244.044;RPR=282;RUN=1;SAF=282;SAP=615.366;SAR=0;SRF=111;SRP=244.044;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:151:47,104:47:1885:104:4097:-323.111,0,-124.4 0/1:107:34,73:34:1352:73:2902:-228.924,0,-89.7283 0/1:93:17,76:17:683:76:3028:-244.446,0,-33.8032 0/1:42:13,29:13:516:29:1170:-92.8764,0,-34.141 dDocent_Contig_2074 1 . N G 149.15 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=5.18177;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=0.25;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=148;QR=0;RO=0;RPL=0;RPP=11.6962;RPPR=0;RPR=4;RUN=1;SAF=1;SAP=5.18177;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:1:0,1:0:0:1:40:-3.99568,-0.30103,0 1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0 1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0 dDocent_Contig_2075 37 . G T 4448.73 . AB=0.801136;ABP=141.639;AC=4;AF=0.5;AN=8;AO=141;CIGAR=1X;DP=176;DPB=176;DPRA=0;EPP=309.188;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.985816;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5576;QR=1413;RO=35;RPL=0;RPP=309.188;RPPR=79.0118;RPR=141;RUN=1;SAF=141;SAP=309.188;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:52:16,36:16:642:36:1404:-110.958,0,-42.4614 0/1:53:6,47:6:242:47:1876:-153.092,0,-6.20273 0/1:58:11,47:11:448:47:1874:-151.407,0,-23.2162 0/1:13:2,11:2:81:11:422:-34.4048,0,-3.77234 dDocent_Contig_2076 34 . T C 9053.9 . AB=0.851852;ABP=119.144;AC=7;AF=0.875;AN=8;AO=271;CIGAR=1X;DP=295;DPB=295;DPRA=0;EPP=591.479;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=10757;QR=930;RO=24;RPL=0;RPP=591.479;RPPR=55.1256;RPR=271;RUN=1;SAF=271;SAP=591.479;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:83:6,77:6:246:77:3062:-253.148,-2.46537,0 0/1:108:16,92:16:606:92:3663:-297.177,0,-22.3467 1/1:80:2,78:2:78:78:3104:-272.033,-16.6791,0 1/1:24:0,24:0:0:24:928:-83.8263,-7.22472,0 dDocent_Contig_2077 149 . A T 152.529 . AB=0.318182;ABP=9.32731;AC=2;AF=0.25;AN=8;AO=7;CIGAR=1X;DP=53;DPB=53;DPRA=0.709677;EPP=18.2106;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=259;QR=1664;RO=46;RPL=0;RPP=18.2106;RPPR=102.898;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=102.898;SRR=46;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:8:8,0:8:298:0:0:0,-2.40824,-27.1755 0/1:16:10,6:10:363:6:222:-15.5216,0,-28.1988 0/0:23:23,0:23:822:0:0:0,-6.92369,-74.2998 0/1:6:5,1:5:181:1:37:-1.89165,0,-14.837 dDocent_Contig_2078 14 . G A 5788.63 . AB=0.497436;ABP=3.03257;AC=4;AF=0.5;AN=8;AO=194;CIGAR=2X;DP=390;DPB=390;DPRA=0;EPP=424.276;EPPR=428.619;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7783;QR=7830;RO=196;RPL=0;RPP=424.276;RPPR=428.619;RPR=194;RUN=1;SAF=194;SAP=424.276;SAR=0;SRF=196;SRP=428.619;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:175:107,68:107:4268:68:2742:-194.207,0,-331.403 0|1:101:31,70:31:1236:70:2807:-222.335,0,-81.1106 0|1:79:41,38:41:1644:38:1524:-113.622,0,-124.408 0|1:35:17,18:17:682:18:710:-53.6893,0,-51.175 dDocent_Contig_2079 10 . G C 3230.94 . AB=0.52093;ABP=3.82839;AC=4;AF=0.5;AN=8;AO=112;CIGAR=1X;DP=215;DPB=215;DPRA=0;EPP=246.215;EPPR=226.672;GTI=0;LEN=1;MEANALT=1;MQM=55.6696;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.848214;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4478;QR=4121;RO=103;RPL=0;RPP=246.215;RPPR=226.672;RPR=112;RUN=1;SAF=112;SAP=246.215;SAR=0;SRF=103;SRP=226.672;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:2,22:2:82:22:896:-72.3939,0,-0.554958 0/1:74:33,41:33:1317:41:1660:-118.792,0,-96.5175 0/1:76:49,27:49:1971:27:1067:-73.3893,0,-154.699 0/1:41:19,22:19:751:22:855:-62.6496,0,-55.5647 dDocent_Contig_2080 187 . A G 5550.68 . AB=0.419287;ABP=30.0012;AC=4;AF=0.5;AN=8;AO=200;CIGAR=1X;DP=477;DPB=477;DPRA=0;EPP=437.305;EPPR=602.337;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7811;QR=10536;RO=276;RPL=200;RPP=437.305;RPPR=602.337;RPR=0;RUN=1;SAF=0;SAP=437.305;SAR=200;SRF=0;SRP=602.337;SRR=276;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:203:124,79:124:4765:79:3060:-214.377,0,-367.752 0/1:158:57,100:57:2197:100:3953:-308.089,0,-150.272 0/1:70:56,14:56:2108:14:516:-25.686,0,-168.87 0/1:46:39,7:39:1466:7:282:-11.9052,0,-118.358 dDocent_Contig_2081 117 . G T 655.837 . AB=0.258621;ABP=91.0673;AC=4;AF=0.5;AN=8;AO=45;CIGAR=1X;DP=174;DPB=174;DPRA=0;EPP=100.727;EPPR=283.13;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=0.992248;PAO=0;PQA=0;PQR=0;PRO=0;QA=1353;QR=4248;RO=129;RPL=0;RPP=100.727;RPPR=283.13;RPR=45;RUN=1;SAF=0;SAP=100.727;SAR=45;SRF=0;SRP=283.13;SRR=129;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:77:63,14:63:2084:14:423:-15.1852,0,-164.651 0/1:57:46,11:46:1488:11:323:-12.1993,0,-117.043 0/1:23:7,16:7:241:16:483:-36.8386,0,-15.1027 0/1:17:13,4:13:435:4:124:-6.35024,0,-34.3552 dDocent_Contig_2082 16 . T A 476.514 . AB=0.192308;ABP=109.914;AC=3;AF=0.375;AN=8;AO=25;CIGAR=1X;DP=159;DPB=159;DPRA=1.49425;EPP=57.2971;EPPR=293.988;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=992;QR=5300;RO=134;RPL=0;RPP=57.2971;RPPR=293.988;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=134;SRP=293.988;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:49:43,6:43:1698:6:240:-7.22556,0,-138.293 0/1:62:48,14:48:1903:14:549:-31.0841,0,-152.813 0/0:29:29,0:29:1142:0:0:0,-8.72987,-103.06 0/1:19:14,5:14:557:5:203:-12.9335,0,-44.7526 dDocent_Contig_2083 9 . G T 8390.17 . AB=0.0311778;ABP=1656.3;AC=0;AF=0;AN=8;AO=27;CIGAR=1M1I3M1X;DP=866;DPB=935.2;DPRA=0;EPP=61.6401;EPPR=1127.83;GTI=0;LEN=1;MEANALT=2.75;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1034;QR=19704;RO=518;RPL=0;RPP=61.6401;RPPR=1127.83;RPR=27;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=518;SRP=1127.83;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:253:153,10,90:153:5846:10,90:381,3454:-237.462,-252.267,-728.933,0,-448.425,-452.585 0|0:241:147,6,87:147:5572:6,87:230,3336:-229.548,-254.922,-709.97,0,-437.976,-430.664 0|0:200:118,2,78:118:4489:2,78:77,2980:-208.98,-238.179,-605.759,0,-361.854,-344.696 0|0:172:100,9,63:100:3797:9,63:346,2414:-168.017,-169.714,-478.374,0,-282.961,-292.403 dDocent_Contig_2084 21 . T A 406.975 . AB=0.137097;ABP=286.703;AC=3;AF=0.375;AN=8;AO=36;CIGAR=1X;DP=279;DPB=279;DPRA=0;EPP=81.1833;EPPR=530.678;GTI=0;LEN=1;MEANALT=1;MQM=55.8889;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=0.888889;PAIREDR=0.983539;PAO=0;PQA=0;PQR=0;PRO=0;QA=1450;QR=9794;RO=243;RPL=0;RPP=81.1833;RPPR=530.678;RPR=36;RUN=1;SAF=36;SAP=81.1833;SAR=0;SRF=243;SRP=530.678;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:89:73,16:73:2944:16:653:-32.3107,0,-238.252 0/1:81:70,11:70:2806:11:444:-10.1216,0,-228.252 0/1:78:71,7:71:2878:7:277:-1.81742,0,-235.626 0/0:31:29,2:29:1166:2:76:0,-4.02004,-99.9045 dDocent_Contig_2085 98 . N A 241.672 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=8;CIGAR=1X;DP=8;DPB=8;DPRA=0;EPP=20.3821;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=258;QR=0;RO=0;RPL=8;RPP=20.3821;RPPR=0;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:6:0,6:0:0:6:192:-17.5955,-1.80618,0 1/1:2:0,2:0:0:2:66:-6.26836,-0.60206,0 dDocent_Contig_2087 51 . G T 4500.49 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=386;CIGAR=1X;DP=429;DPB=429;DPRA=0;EPP=841.199;EPPR=74.6689;GTI=0;LEN=1;MEANALT=2.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5299;QR=307;RO=33;RPL=386;RPP=841.199;RPPR=74.6689;RPR=0;RUN=1;SAF=386;SAP=841.199;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:136:5,128:5:43:128:1644:-144.134,-36.157,0 1/1:113:8,100:8:62:100:1320:-113.255,-26.9586,0 1/1:102:9,92:9:94:92:1417:-119.118,-21.9132,0 1/1:78:11,66:11:108:66:918:-72.9403,-13.4337,0 dDocent_Contig_2088 129 . A G 61.2594 . AB=0.152542;ABP=64.8789;AC=1;AF=0.125;AN=8;AO=16;CIGAR=1X;DP=207;DPB=207;DPRA=0.877193;EPP=37.7539;EPPR=413.419;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=59.5926;NS=4;NUMALT=1;ODDS=0;PAIRED=0.9375;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=485;QR=6187;RO=189;RPL=0;RPP=37.7539;RPPR=413.419;RPR=16;RUN=1;SAF=0;SAP=37.7539;SAR=16;SRF=0;SRP=413.419;SRR=189;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:59:50,9:50:1670:9:271:-6.92182,0,-132.159 0/0:57:56,0:56:1797:0:0:0,-16.8577,-161.928 0/0:54:48,5:48:1570:5:144:0,-2.81704,-128.374 0/0:37:35,2:35:1150:2:70:0,-4.49071,-97.1482 dDocent_Contig_2089 10 . C A 1161.17 . AB=0.043956;ABP=167.398;AC=0;AF=0;AN=8;AO=4;CIGAR=2X;DP=186;DPB=186;DPRA=0;EPP=11.6962;EPPR=276.616;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=0.896825;PAO=0;PQA=0;PQR=0;PRO=0;QA=154;QR=4973;RO=126;RPL=0;RPP=11.6962;RPPR=276.616;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=126;SRP=276.616;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:64:38,0,18,8:38:1511:0,18,8:0,721,318:-47.9592,-59.3983,-183.796,0,-124.399,-118.981,-33.2188,-157.616,-98.2189,-155.208 0|0:44:25,3,16,0:25:981:3,16,0:116,640,0:-45.2043,-43.2052,-122.973,0,-71.1539,-75.8637,-52.73,-123.876,-80.6802,-133.402 0|0:47:38,1,8,0:38:1485:1,8,0:38,323,0:-15.2092,-23.5345,-145.294,0,-118.965,-119.673,-26.6484,-145.595,-122.082,-148.711 0|0:31:25,0,6,0:25:996:0,6,0:0,241,0:-12.7339,-20.2596,-102.273,0,-82.4136,-80.6075,-20.2596,-102.273,-82.4136,-102.273 dDocent_Contig_2090 209 . N G 434.349 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=12;CIGAR=1X;DP=12;DPB=12;DPRA=0;EPP=29.068;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=471;QR=0;RO=0;RPL=12;RPP=29.068;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=29.068;SAR=12;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:8:0,8:0:0:8:312:-28.4413,-2.40824,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:4:0,4:0:0:4:159:-14.692,-1.20412,0 dDocent_Contig_2091 18 . T C 36.7256 . AB=0.2;ABP=10.8276;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X;DP=80;DPB=80;DPRA=0.428571;EPP=7.35324;EPPR=172.385;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=3139;RO=78;RPL=0;RPP=7.35324;RPPR=172.385;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=78;SRP=172.385;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:21:21,0:21:840:0:0:0,-6.32163,-75.9113 0/0:27:27,0:27:1087:0:0:0,-8.12781,-98.1143 0/0:22:22,0:22:889:0:0:0,-6.62266,-80.3174 0/1:10:8,2:8:323:2:82:-4.76938,0,-26.4283 dDocent_Contig_2092 55 . C T 1538.73 . AB=0.477273;ABP=3.40511;AC=5;AF=0.625;AN=8;AO=60;CIGAR=1X;DP=107;DPB=107;DPRA=0;EPP=133.299;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2072;QR=1821;RO=47;RPL=60;RPP=133.299;RPPR=105.07;RPR=0;RUN=1;SAF=60;SAP=133.299;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:33:13,20:13:512:20:699:-53.2886,0,-36.4892 1/1:19:1,18:1:38:18:653:-55.3012,-1.9223,0 0/1:28:13,15:13:505:15:487:-35.7066,0,-37.3627 0/1:27:20,7:20:766:7:233:-13.1679,0,-61.1351 dDocent_Contig_2093 153 . C T 38.277 . AB=0.108696;ABP=64.1892;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=117;DPB=117;DPRA=1.94366;EPP=13.8677;EPPR=246.215;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=201;QR=4418;RO=112;RPL=0;RPP=13.8677;RPPR=246.215;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=246.215;SRR=112;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:46:41,5:41:1605:5:201:-4.62351,0,-130.838 0/0:20:20,0:20:788:0:0:0,-6.0206,-71.2396 0/0:26:26,0:26:1042:0:0:0,-7.82678,-94.0693 0/0:25:25,0:25:983:0:0:0,-7.52575,-88.7709 dDocent_Contig_2094 1 . N G 218.454 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=6;CIGAR=1X;DP=6;DPB=6;DPRA=0;EPP=16.0391;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=231;QR=0;RO=0;RPL=0;RPP=16.0391;RPPR=0;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:4:0,4:0:0:4:153:-14.1388,-1.20412,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:78:-7.40278,-0.60206,0 dDocent_Contig_2095 15 . T C 8763.23 . AB=0.259553;ABP=699.524;AC=4;AF=0.5;AN=8;AO=360;CIGAR=1X;DP=1387;DPB=1387;DPRA=0;EPP=784.74;EPPR=2233.11;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.996105;PAO=0;PQA=0;PQR=0;PRO=0;QA=14431;QR=41132;RO=1027;RPL=0;RPP=784.74;RPPR=2233.11;RPR=360;RUN=1;SAF=360;SAP=784.74;SAR=0;SRF=1027;SRP=2233.11;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:459:337,122:337:13549:122:4917:-304.225,0,-1080.19 0/1:476:349,127:349:13988:127:5075:-313.325,0,-1114.56 0/1:302:238,64:238:9457:64:2551:-138.802,0,-759.63 0/1:150:103,47:103:4138:47:1888:-124.961,0,-327.231 dDocent_Contig_2096 82 . A G 32.9491 . AB=0.101266;ABP=112.106;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=193;DPB=193;DPRA=2.07895;EPP=20.3821;EPPR=404.733;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.994595;PAO=0;PQA=0;PQR=0;PRO=0;QA=309;QR=7040;RO=185;RPL=8;RPP=20.3821;RPPR=404.733;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=185;SRP=404.733;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:62:62,0:62:2364:0:0:0,-18.6639,-212.972 0/1:79:71,8:71:2687:8:309:-4.3916,0,-218.241 0/0:27:27,0:27:1033:0:0:0,-8.12781,-93.2789 0/0:25:25,0:25:956:0:0:0,-7.52575,-86.3552 dDocent_Contig_2097 25 . C T 4685.74 . AB=0;ABP=0;AC=6;AF=0.75;AN=8;AO=4;CIGAR=2M1X;DP=179;DPB=226.333;DPRA=1.72727;EPP=11.6962;EPPR=74.6689;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=160;QR=1300;RO=33;RPL=0;RPP=11.6962;RPPR=74.6689;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:33:0,33,0:0:0:33,0:1314,0:-118.531,-9.93399,0,-118.531,-9.93399,-118.531 1|1:57:3,50,4:3:112:50,4:1980,160:-167.949,-5.89436,0,-155.672,-1.85659,-163.635 0|1:59:22,37,0:22:867:37,0:1466,0:-114.435,0,-60.5834,-121.058,-71.7215,-192.385 0|1:30:8,22,0:8:321:22,0:873,0:-69.8533,0,-20.2274,-72.2615,-26.85,-98.7119 dDocent_Contig_2098 12 . T C 38.5546 . AB=0.0985915;ABP=102.378;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=320;DPB=320;DPRA=0.855422;EPP=18.2106;EPPR=682.681;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=285;QR=12563;RO=313;RPL=0;RPP=18.2106;RPPR=682.681;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=313;SRP=682.681;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:71:64,7:64:2557:7:285:-4.65128,0,-208.892 0/0:120:120,0:120:4822:0:0:0,-36.1236,-433.864 0/0:72:72,0:72:2908:0:0:0,-21.6742,-261.808 0/0:57:57,0:57:2276:0:0:0,-17.1587,-205.003 dDocent_Contig_2099 7 . T A 6525.99 . AB=0.404531;ABP=27.4727;AC=4;AF=0.5;AN=8;AO=125;CIGAR=1X1M1X;DP=309;DPB=309;DPRA=0;EPP=274.444;EPPR=107.241;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4784;QR=1816;RO=48;RPL=0;RPP=274.444;RPPR=107.241;RPR=125;RUN=1;SAF=125;SAP=274.444;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:96:19,33,44:19:730:33,44:1267,1689:-176.999,-78.7132,-128.707,-44.0775,0,-90.7597 1|0:128:20,58,50:20:743:58,50:2209,1928:-272.712,-97.5374,-140.875,-120.405,0,-166.153 1|0:43:6,22,15:6:227:22,15:849,578:-96.7797,-28.8608,-40.8447,-51.1238,0,-65.2152 1|0:42:3,12,27:3:116:12,27:459,1023:-111.099,-74.335,-80.2517,-28.1332,0,-29.5344 dDocent_Contig_2100 35 . A T 149.569 . AB=0.212121;ABP=26.7649;AC=2;AF=0.25;AN=8;AO=7;CIGAR=1X;DP=57;DPB=57;DPRA=1.375;EPP=18.2106;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=280;QR=1992;RO=50;RPL=0;RPP=18.2106;RPPR=111.584;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:15,6:15:592:6:241:-15.7445,0,-47.2936 0/0:14:14,0:14:561:0:0:0,-4.21442,-50.8292 0/1:12:11,1:11:435:1:39:-0.284205,0,-35.8878 0/0:10:10,0:10:404:0:0:0,-3.0103,-36.7204 dDocent_Contig_2101 9 . G A 42.8861 . AB=0.113208;ABP=71.8828;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=290;DPB=290;DPRA=0.670886;EPP=16.0391;EPPR=619.708;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.985915;PAO=0;PQA=0;PQR=0;PRO=0;QA=233;QR=10844;RO=284;RPL=0;RPP=16.0391;RPPR=619.708;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=284;SRP=619.708;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:54:54,0:54:2065:0:0:0,-16.2556,-186.082 0/0:157:157,0:157:5993:0:0:0,-47.2617,-539.319 0/0:26:26,0:26:989:0:0:0,-7.82678,-89.3218 0/1:53:47,6:47:1797:6:233:-5.38549,0,-146.03 dDocent_Contig_2103 98 . N A 1446.07 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=45;CIGAR=2X;DP=45;DPB=45;DPRA=0;EPP=100.727;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=4;NUMALT=1;ODDS=1.35525e-20;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1585;QR=0;RO=0;RPL=45;RPP=100.727;RPPR=0;RPR=0;RUN=1;SAF=45;SAP=100.727;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:1:0,1:0:0:1:36:-3.59827,-0.30103,0 1|1:7:0,7:0:0:7:247:-22.5731,-2.10721,0 1|1:14:0,14:0:0:14:492:-44.6117,-4.21442,0 1|1:23:0,23:0:0:23:810:-73.2199,-6.92369,0 dDocent_Contig_2105 43 . T C 1023.56 . AB=0.37931;ABP=14.0174;AC=2;AF=0.25;AN=8;AO=35;CIGAR=1M1X9M;DP=319;DPB=320.273;DPRA=0;EPP=79.0118;EPPR=589.308;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1370;QR=10579;RO=270;RPL=0;RPP=79.0118;RPPR=589.308;RPR=35;RUN=1;SAF=35;SAP=79.0118;SAR=0;SRF=270;SRP=589.308;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:110:96,14,0:96:3761:14,0:537,0:-15.5539,0,-305.436,-44.4528,-309.651,-353.719 0|0:122:120,0,2:120:4715:0,2:0,82:0,-36.1236,-423.913,-28.946,-417.145,-416.543 0|1:58:35,0,23:35:1367:0,23:0,890:-62.9464,-73.4825,-185.859,0,-112.764,-105.84 0|1:29:19,0,10:19:736:0,10:0,398:-27.4469,-33.1665,-93.6187,0,-60.8461,-57.8358 dDocent_Contig_2106 40 . C A 3560.77 . AB=0.545045;ABP=6.92286;AC=4;AF=0.5;AN=8;AO=121;CIGAR=1X;DP=222;DPB=222;DPRA=0;EPP=265.758;EPPR=222.329;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4742;QR=4041;RO=101;RPL=0;RPP=265.758;RPPR=222.329;RPR=121;RUN=1;SAF=121;SAP=265.758;SAR=0;SRF=101;SRP=222.329;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:63:34,29:34:1353:29:1130:-83.0212,0,-103.068 0/1:63:23,40:23:916:40:1598:-125.097,0,-63.7824 0/1:65:28,37:28:1128:37:1413:-107.852,0,-82.2352 0/1:31:16,15:16:644:15:601:-45.0965,0,-48.9631 dDocent_Contig_2107 17 . C T 1674.7 . AB=0.266409;ABP=125.761;AC=4;AF=0.5;AN=8;AO=69;CIGAR=1X;DP=259;DPB=259;DPRA=0;EPP=152.842;EPPR=415.59;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.936842;PAO=0;PQA=0;PQR=0;PRO=0;QA=2768;QR=7675;RO=190;RPL=0;RPP=152.842;RPPR=415.59;RPR=69;RUN=1;SAF=69;SAP=152.842;SAR=0;SRF=190;SRP=415.59;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:98:86,12:86:3465:12:484:-14.4107,0,-282.378 0/1:71:48,23:48:1945:23:913:-61.0969,0,-153.867 0/1:62:43,19:43:1747:19:774:-51.3151,0,-138.777 0/1:28:13,15:13:518:15:597:-45.6372,0,-38.5364 dDocent_Contig_2108 20 . A C 119.32 . AB=0.148148;ABP=61.0771;AC=1;AF=0.125;AN=8;AO=11;CIGAR=1X;DP=145;DPB=145;DPRA=1.96825;EPP=26.8965;EPPR=293.988;GTI=0;LEN=1;MEANALT=1;MQM=53.4545;MQMR=59.5373;NS=4;NUMALT=1;ODDS=0;PAIRED=0.636364;PAIREDR=0.962687;PAO=0;PQA=0;PQR=0;PRO=0;QA=450;QR=5336;RO=134;RPL=0;RPP=26.8965;RPPR=293.988;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=134;SRP=293.988;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:54:46,8:46:1826:8:328:-12.7279,0,-148.042 0/0:50:48,2:48:1897:2:81:0,-7.36577,-163.181 0/0:20:19,1:19:767:1:41:0,-1.92603,-65.2564 0/0:21:21,0:21:846:0:0:0,-6.32163,-76.3979 dDocent_Contig_2109 31 . A G 351.422 . AB=0.195402;ABP=73.1214;AC=1;AF=0.125;AN=8;AO=17;CIGAR=1X;DP=162;DPB=162;DPRA=3.48;EPP=39.9253;EPPR=309.248;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.8759;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.986207;PAO=0;PQA=0;PQR=0;PRO=0;QA=690;QR=5747;RO=145;RPL=0;RPP=39.9253;RPPR=317.874;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=144;SRP=309.248;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:47:47,0:47:1868:0:0:0,-14.1484,-168.333 0/1:87:70,17:70:2777:17:690:-36.2391,0,-223.791 0/0:11:11,0:11:441:0:0:0,-3.31133,-40.0461 0/0:17:17,0:17:661:0:0:0,-5.11751,-59.8155 dDocent_Contig_2110 71 . T C 133.62 . AB=0.166667;ABP=66.7068;AC=4;AF=0.5;AN=8;AO=11;CIGAR=1X;DP=66;DPB=66;DPRA=0;EPP=19.0002;EPPR=113.913;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.909091;PAIREDR=0.890909;PAO=0;PQA=0;PQR=0;PRO=0;QA=407;QR=2083;RO=55;RPL=11;RPP=26.8965;RPPR=122.441;RPR=0;RUN=1;SAF=10;SAP=19.0002;SAR=1;SRF=54;SRP=113.913;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:19,4:19:716:4:152:-7.12583,0,-57.8424 0/1:23:19,4:19:730:4:140:-6.01869,0,-59.0981 0/1:9:8,1:8:315:1:41:-1.3853,0,-26.0064 0/1:11:9,2:9:322:2:74:-3.71444,0,-26.0036 dDocent_Contig_2111 36 . A G 907.56 . AB=0.14128;ABP=509.328;AC=2;AF=0.25;AN=8;AO=94;CIGAR=1X;DP=925;DPB=925;DPRA=0;EPP=207.129;EPPR=1805.33;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.99759;PAO=0;PQA=0;PQR=0;PRO=0;QA=3737;QR=32137;RO=830;RPL=0;RPP=207.129;RPPR=1805.33;RPR=94;RUN=1;SAF=94;SAP=207.129;SAR=0;SRF=830;SRP=1805.33;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:393:335,58:335:12954:58:2299:-88.7632,0,-1046.83 0/0:340:317,22:317:12273:22:880:0,-22.8053,-1024.37 0/0:132:124,8:124:4821:8:315:0,-11.0221,-405.145 0/1:60:54,6:54:2089:6:243:-4.18638,0,-170.162 dDocent_Contig_2112 9 . A G 11556.2 . AB=0.362592;ABP=202.923;AC=4;AF=0.5;AN=8;AO=442;CIGAR=1X;DP=1219;DPB=1219;DPRA=0;EPP=936.92;EPPR=1690.24;GTI=0;LEN=1;MEANALT=1;MQM=59.7172;MQMR=59.8893;NS=4;NUMALT=1;ODDS=0;PAIRED=0.986425;PAIREDR=0.8713;PAO=0;PQA=0;PQR=0;PRO=0;QA=16985;QR=29680;RO=777;RPL=0;RPP=962.801;RPPR=1690.24;RPR=442;RUN=1;SAF=439;SAP=936.92;SAR=3;SRF=777;SRP=1690.24;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:392:259,133:259:9938:133:5091:-340.183,0,-775.899 0/1:454:276,178:276:10490:178:6872:-480.883,0,-807.056 0/1:234:155,79:155:5895:79:3052:-204.393,0,-460.059 0/1:139:87,52:87:3357:52:1970:-135.152,0,-260.418 dDocent_Contig_2113 13 . C T 6485.95 . AB=0.729537;ABP=131.606;AC=4;AF=0.5;AN=8;AO=205;CIGAR=1X;DP=281;DPB=281;DPRA=0;EPP=448.162;EPPR=165.871;GTI=0;LEN=1;MEANALT=1.25;MQM=59.7463;MQMR=49.2267;NS=4;NUMALT=1;ODDS=0;PAIRED=0.892683;PAIREDR=0.573333;PAO=0;PQA=0;PQR=0;PRO=0;QA=8197;QR=2993;RO=75;RPL=0;RPP=448.162;RPPR=165.871;RPR=205;RUN=1;SAF=205;SAP=448.162;SAR=0;SRF=75;SRP=165.871;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:80:15,64:15:606:64:2601:-209.929,0,-30.6865 0/1:109:27,82:27:1069:82:3246:-259.35,0,-53.3068 0/1:66:22,44:22:873:44:1761:-138.792,0,-38.2352 0/1:26:11,15:11:445:15:589:-45.5143,0,-30.6099 dDocent_Contig_2114 1 . N G 156.746 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0.75;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=162;QR=0;RO=0;RPL=0;RPP=11.6962;RPPR=0;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:122:-11.3725,-0.90309,0 ./.:.:.:.:.:.:.:. 1/1:1:0,1:0:0:1:40:-3.99568,-0.30103,0 ./.:.:.:.:.:.:.:. dDocent_Contig_2115 92 . A T 244.431 . AB=0.588235;ABP=4.1599;AC=1;AF=0.125;AN=8;AO=13;CIGAR=1X;DP=119;DPB=119;DPRA=1.03448;EPP=31.2394;EPPR=233.186;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.990566;PAO=0;PQA=0;PQR=0;PRO=0;QA=434;QR=3474;RO=106;RPL=13;RPP=31.2394;RPPR=233.186;RPR=0;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=106;SRP=233.186;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:29:29,0:29:987:0:0:0,-8.72987,-89.1402 0/0:41:40,1:40:1308:1:35:0,-8.8436,-114.509 0/0:32:30,2:30:993:2:62:0,-3.74402,-83.7836 0/1:17:7,10:7:186:10:337:-25.54,0,-11.8841 dDocent_Contig_2118 84 . T A 62.1884 . AB=0.134328;ABP=80.8268;AC=2;AF=0.25;AN=8;AO=9;CIGAR=1X;DP=152;DPB=152;DPRA=0.788235;EPP=22.5536;EPPR=313.531;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=310;QR=4881;RO=143;RPL=9;RPP=22.5536;RPPR=313.531;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=143;SRP=313.531;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:42:42,0:42:1434:0:0:0,-12.6433,-129.356 0/1:47:41,6:41:1398:6:205:-4.63658,0,-111.968 0/0:43:43,0:43:1475:0:0:0,-12.9443,-133.046 0/1:20:17,3:17:574:3:105:-3.77556,0,-45.9599 dDocent_Contig_2119 19 . T C 2425.47 . AB=0.32967;ABP=71.8054;AC=2;AF=0.25;AN=8;AO=97;CIGAR=1X;DP=390;DPB=390;DPRA=0;EPP=213.643;EPPR=639.252;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.976109;PAO=0;PQA=0;PQR=0;PRO=0;QA=3912;QR=11785;RO=293;RPL=0;RPP=213.643;RPPR=639.252;RPR=97;RUN=1;SAF=97;SAP=213.643;SAR=0;SRF=293;SRP=639.252;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:132:64,68:64:2580:68:2765:-209.208,0,-192.585 0/1:141:119,22:119:4790:22:863:-35.5324,0,-388.544 0/0:71:66,5:66:2653:5:205:0,-2.53812,-220.05 0/0:46:44,2:44:1762:2:79:0,-6.35014,-151.298 dDocent_Contig_2120 67 . A G 3554.8 . AB=0.722222;ABP=33.8935;AC=6;AF=0.75;AN=8;AO=110;CIGAR=1X;DP=131;DPB=131;DPRA=0;EPP=241.872;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4240;QR=804;RO=21;RPL=110;RPP=241.872;RPPR=48.6112;RPR=0;RUN=1;SAF=110;SAP=241.872;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:32:5,27:5:193:27:1024:-82.8128,0,-8.10837 0/1:40:15,25:15:577:25:935:-72.3996,0,-40.2152 1/1:45:0,45:0:0:45:1754:-158.084,-13.5464,0 1/1:14:1,13:1:34:13:527:-44.3773,-0.815509,0 dDocent_Contig_2121 8 . A T 977.501 . AB=0.0886076;ABP=235.275;AC=2;AF=0.25;AN=8;AO=14;CIGAR=1M1X2M4I1X25M;DP=228;DPB=223.567;DPRA=0;EPP=33.4109;EPPR=120.27;GTI=0;LEN=1;MEANALT=8.33333;MQM=60;MQMR=60;NS=4;NUMALT=6;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=548;QR=2013;RO=54;RPL=0;RPP=33.4109;RPPR=120.27;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:70:21,19,0,0,0,2,0:21:785:19,0,0,0,2,0:654,0,0,0,76,0:-44.5139,0,-58.5808,-50.8356,-64.3003,-115.129,-50.8356,-64.3003,-115.129,-115.129,-50.8356,-64.3003,-115.129,-115.129,-115.129,-44.6002,-58.0658,-108.895,-108.895,-108.895,-108.293,-50.8356,-64.3003,-115.129,-115.129,-115.129,-108.895,-115.129 0|0:83:17,7,16,0,3,0,4:17:632:7,16,0,3,0,4:230,432,0,119,0,132:-27.7432,-15.0552,-64.6797,0,-33.9254,-46.9114,-32.8607,-66.7869,-51.7279,-84.592,-23.0615,-56.9885,-41.9299,-74.7937,-73.8906,-32.8607,-66.7869,-51.7279,-84.592,-74.7937,-84.592,-22.1935,-56.1202,-41.0623,-73.9252,-64.1268,-73.9252,-72.721 0|1:46:8,3,0,0,4,0,0:8:294:3,0,0,4,0,0:79,0,0,153,0,0:-10.1531,-6.60724,-29.7467,-12.5614,-30.6498,-36.6046,-12.5614,-30.6498,-36.6046,-36.6046,0,-18.0905,-24.0451,-24.0451,-22.841,-12.5614,-30.6498,-36.6046,-36.6046,-24.0451,-36.6046,-12.5614,-30.6498,-36.6046,-36.6046,-24.0451,-36.6046,-36.6046 0|1:29:8,4,0,2,7,0,4:8:302:4,0,2,7,0,4:131,0,60,276,0,149:-20.3295,-12.5611,-36.1213,-22.7377,-37.3254,-47.5016,-18.4881,-33.0761,-43.2509,-42.6488,0,-14.6006,-24.7782,-20.528,-22.671,-22.7377,-37.3254,-47.5016,-43.2509,-24.7782,-47.5016,-10.5318,-25.1243,-35.3003,-31.0502,-12.572,-35.3003,-34.0962 dDocent_Contig_2122 160 . A G 1435.02 . AB=0.566667;ABP=4.16842;AC=6;AF=0.75;AN=8;AO=44;CIGAR=1X;DP=58;DPB=58;DPRA=0;EPP=81.9729;EPPR=33.4109;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1749;QR=551;RO=14;RPL=42;RPP=81.9729;RPPR=33.4109;RPR=2;RUN=1;SAF=0;SAP=98.5551;SAR=44;SRF=0;SRP=33.4109;SRR=14;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:12:0,12:0:0:12:474:-43.0084,-3.61236,0 0/1:13:5,8:5:201:8:325:-25.7062,0,-14.5571 0/1:17:8,9:8:309:9:350:-26.7368,0,-23.045 1/1:16:1,15:1:41:15:600:-50.2433,-0.721913,0 dDocent_Contig_2123 9 . G C 137.479 . 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AB=0.3;ABP=13.4334;AC=2;AF=0.25;AN=8;AO=9;CIGAR=1X;DP=48;DPB=48;DPRA=1.66667;EPP=22.5536;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=351;QR=1560;RO=39;RPL=9;RPP=22.5536;RPPR=87.6977;RPR=0;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=87.6977;SRR=39;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:8:8,0:8:325:0:0:0,-2.40824,-29.6194 0/1:16:14,2:14:571:2:82:-2.9632,0,-46.9154 0/0:10:10,0:10:381:0:0:0,-3.0103,-34.6366 0/1:14:7,7:7:283:7:269:-20.3572,0,-21.6292 dDocent_Contig_2125 12 . A T 98.8405 . AB=0.114943;ABP=115.053;AC=1;AF=0.125;AN=8;AO=14;CIGAR=1X;DP=282;DPB=282;DPRA=0.92;EPP=33.4109;EPPR=584.965;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=553;QR=10690;RO=268;RPL=0;RPP=33.4109;RPPR=584.965;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=268;SRP=584.965;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:75:75,0:75:2997:0:0:0,-22.5772,-269.81 0/0:75:72,3:72:2870:3:120:0,-11.3899,-247.213 0/1:87:77,10:77:3080:10:409:-10.981,0,-251.092 0/0:45:44,1:44:1743:1:24:0,-11.1465,-154.695 dDocent_Contig_2126 13 . T A 367.283 . AB=0.371429;ABP=8.03571;AC=1;AF=0.125;AN=8;AO=13;CIGAR=2M1X6M;DP=250;DPB=249.667;DPRA=0.488372;EPP=31.2394;EPPR=502.449;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=528;QR=9056;RO=230;RPL=0;RPP=31.2394;RPPR=502.449;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=230;SRP=502.449;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:144:142,0,0:142:5598:0,0:0,0:0,-42.7463,-503.455,-42.7463,-503.455,-503.455 0|1:35:19,2,13:19:756:2,13:82,528:-37.8252,-36.7762,-98.4186,0,-55.4698,-58.3256 0|0:36:35,0,0:35:1368:0,0:0,0:0,-10.536,-123.275,-10.536,-123.275,-123.275 0|0:35:34,0,0:34:1334:0,0:0,0:0,-10.235,-119.931,-10.235,-119.931,-119.931 dDocent_Contig_2128 38 . C T 439.879 . AB=0.109312;ABP=657.951;AC=3;AF=0.375;AN=8;AO=58;CIGAR=1X;DP=545;DPB=545;DPRA=0;EPP=128.956;EPPR=1058.35;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2330;QR=19425;RO=486;RPL=0;RPP=128.956;RPPR=1058.35;RPR=58;RUN=1;SAF=58;SAP=128.956;SAR=0;SRF=486;SRP=1058.35;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:173:152,21:152:6068:21:857:-25.3605,0,-493.811 0/1:198:179,18:179:7182:18:707:-4.5451,0,-586.63 0/1:123:108,15:108:4284:15:604:-17.6722,0,-348.488 0/0:51:47,4:47:1891:4:162:0,-0.385783,-155.425 dDocent_Contig_2129 1 . N G 76.9006 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=4.60517;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:81:-7.68573,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_2130 10 . G A 19328.2 . 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T G 8885.78 . AB=0.452663;ABP=16.1676;AC=4;AF=0.5;AN=8;AO=306;CIGAR=1X;DP=676;DPB=676;DPRA=0;EPP=667.481;EPPR=804.284;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=12187;QR=14676;RO=369;RPL=0;RPP=667.481;RPPR=804.284;RPR=306;RUN=1;SAF=306;SAP=667.481;SAR=0;SRF=369;SRP=804.284;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:195:125,70:125:4943:70:2762:-189.991,0,-386.066 0/1:222:108,114:108:4314:114:4544:-342.067,0,-321.376 0/1:139:71,68:71:2836:68:2701:-201.372,0,-213.503 0/1:120:65,54:65:2583:54:2180:-160.138,0,-196.371 dDocent_Contig_2133 7 . T A 616.042 . AB=0.191011;ABP=150.622;AC=3;AF=0.375;AN=8;AO=35;CIGAR=1X;DP=213;DPB=213;DPRA=0;EPP=79.0118;EPPR=387.361;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.6;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1345;QR=6724;RO=177;RPL=0;RPP=79.0118;RPPR=387.361;RPR=35;RUN=1;SAF=35;SAP=79.0118;SAR=0;SRF=177;SRP=387.361;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:35:34,1:34:1290:1:39:0,-6.63949,-112.493 0/1:88:71,17:71:2694:17:649:-32.2559,0,-216.155 0/1:60:46,13:46:1749:13:503:-27.7374,0,-139.799 0/1:30:26,4:26:991:4:154:-5.20256,0,-80.4688 dDocent_Contig_2134 22 . G T 6535.15 . AB=0.864583;ABP=113.846;AC=6;AF=0.75;AN=8;AO=206;CIGAR=1X;DP=226;DPB=226;DPRA=0;EPP=450.334;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.961165;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7867;QR=766;RO=20;RPL=0;RPP=450.334;RPPR=46.4397;RPR=206;RUN=1;SAF=206;SAP=450.334;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:92:7,85:7:266:85:3238:-267.239,-3.39718,0 0/1:66:8,58:8:306:58:2231:-181.115,0,-8.0218 1/1:38:0,38:0:0:38:1459:-131.578,-11.4391,0 0/1:30:5,25:5:194:25:939:-75.7774,0,-8.79671 dDocent_Contig_2135 8 . A G 193.508 . AB=0.159091;ABP=91.8433;AC=1;AF=0.125;AN=8;AO=14;CIGAR=1X;DP=261;DPB=261;DPRA=1.52601;EPP=33.4109;EPPR=539.364;GTI=0;LEN=1;MEANALT=1;MQM=57.5;MQMR=50.8866;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.995951;PAO=0;PQA=0;PQR=0;PRO=0;QA=532;QR=9468;RO=247;RPL=0;RPP=33.4109;RPPR=539.364;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=247;SRP=539.364;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:95:95,0:95:3624:0:0:0,-28.5978,-320.484 0/1:88:74,14:74:2838:14:532:-20.4477,0,-211.545 0/0:37:37,0:37:1423:0:0:0,-11.1381,-121.442 0/0:41:41,0:41:1583:0:0:0,-12.3422,-139.32 dDocent_Contig_2136 116 . G A 9247.94 . AB=0.774799;ABP=247.665;AC=5;AF=0.625;AN=8;AO=342;CIGAR=1X;DP=427;DPB=427;DPRA=0;EPP=745.654;EPPR=187.585;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=11591;QR=2792;RO=85;RPL=0;RPP=745.654;RPPR=187.585;RPR=342;RUN=1;SAF=0;SAP=745.654;SAR=342;SRF=0;SRP=187.585;SRR=85;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:151:28,123:28:950:123:4182:-331.13,0,-40.3537 0/1:143:41,102:41:1342:102:3480:-270.379,0,-78.0169 0/1:79:15,64:15:465:64:2152:-170.165,0,-18.3659 1/1:54:1,53:1:35:53:1777:-156.712,-12.757,0 dDocent_Contig_2137 20 . T G 1353.26 . AB=0.303371;ABP=62.7868;AC=3;AF=0.375;AN=8;AO=54;CIGAR=1X;DP=301;DPB=301;DPRA=0.482385;EPP=120.27;EPPR=539.364;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=0.995951;PAO=0;PQA=0;PQR=0;PRO=0;QA=2128;QR=9957;RO=247;RPL=0;RPP=120.27;RPPR=539.364;RPR=54;RUN=1;SAF=54;SAP=120.27;SAR=0;SRF=247;SRP=539.364;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:123:123,0:123:4923:0:0:0,-37.0267,-442.941 0/1:98:64,34:64:2599:34:1356:-92.7982,0,-204.525 0/1:51:34,17:34:1381:17:650:-43.4712,0,-109.189 0/1:29:26,3:26:1054:3:122:-2.64262,0,-86.4187 dDocent_Contig_2138 136 . A C 12417.1 . AB=0.462963;ABP=16.5217;AC=4;AF=0.5;AN=8;AO=525;CIGAR=1X;DP=1134;DPB=1134;DPRA=0;EPP=1143.03;EPPR=1318.92;GTI=0;LEN=1;MEANALT=1.75;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=5.55112e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=17635;QR=20653;RO=606;RPL=0;RPP=1143.03;RPPR=1318.92;RPR=525;RUN=1;SAF=0;SAP=1143.03;SAR=525;SRF=0;SRP=1318.92;SRR=606;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:333:180,152:180:6143:152:5087:-357.716,0,-452.719 0/1:349:182,167:182:6194:167:5663:-404.77,0,-452.539 0/1:224:136,87:136:4646:87:2915:-195.39,0,-351.128 0/1:228:108,119:108:3670:119:3970:-288.822,0,-261.827 dDocent_Contig_2139 36 . A C 210.147 . AB=0.538462;ABP=3.17734;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X;DP=88;DPB=88;DPRA=1.5;EPP=22.5536;EPPR=174.557;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=334;QR=3113;RO=79;RPL=0;RPP=22.5536;RPPR=174.557;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=79;SRP=174.557;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:43:42,1:42:1669:1:8:0,-12.1443,-149.635 0/0:16:15,1:15:576:1:41:0,-0.721913,-48.0744 0/0:16:16,0:16:632:0:0:0,-4.81648,-57.2077 0/1:13:6,7:6:236:7:285:-22.1108,0,-17.698 dDocent_Contig_2140 21 . T C 6371.19 . AB=0.375828;ABP=83.9012;AC=4;AF=0.5;AN=8;AO=227;CIGAR=1X;DP=604;DPB=604;DPRA=0;EPP=495.935;EPPR=819.484;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.951542;PAIREDR=0.960106;PAO=0;PQA=0;PQR=0;PRO=0;QA=9149;QR=15009;RO=376;RPL=0;RPP=495.935;RPPR=819.484;RPR=227;RUN=1;SAF=227;SAP=495.935;SAR=0;SRF=376;SRP=819.484;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:128:73,55:73:2925:55:2207:-160.268,0,-224.81 0/1:189:132,57:132:5276:57:2309:-151.065,0,-417.777 0/1:171:98,73:98:3942:73:2928:-212.13,0,-303.277 0/1:116:73,42:73:2866:42:1705:-118.645,0,-223.026 dDocent_Contig_2141 120 . C T 1159.75 . AB=0.484536;ABP=3.21178;AC=1;AF=0.125;AN=8;AO=56;CIGAR=1X;DP=256;DPB=256;DPRA=0;EPP=124.613;EPPR=437.305;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1935;QR=6695;RO=200;RPL=0;RPP=124.613;RPPR=437.305;RPR=56;RUN=1;SAF=0;SAP=124.613;SAR=56;SRF=0;SRP=437.305;SRR=200;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:85:81,4:81:2779:4:140:0,-12.6426,-237.417 0/1:97:50,47:50:1667:47:1622:-117.071,0,-121.109 0/0:47:44,3:44:1430:3:103:0,-4.53844,-119.373 0/0:27:25,2:25:819:2:70:0,-1.48041,-67.3637 dDocent_Contig_2143 8 . A G 370.136 . AB=0.130112;ABP=322.685;AC=2;AF=0.25;AN=8;AO=35;CIGAR=1X;DP=507;DPB=507;DPRA=1.13025;EPP=79.0118;EPPR=1027.95;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1328;QR=17982;RO=472;RPL=0;RPP=79.0118;RPPR=1027.95;RPR=35;RUN=1;SAF=35;SAP=79.0118;SAR=0;SRF=472;SRP=1027.95;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:136:136,0:136:5197:0:0:0,-40.9401,-467.734 0/1:151:132,19:132:4991:19:716:-19.3118,0,-403.757 0/1:118:102,16:102:3897:16:612:-19.8956,0,-315.312 0/0:102:102,0:102:3897:0:0:0,-30.7051,-350.829 dDocent_Contig_2144 9 . G C 12997.3 . AB=0.241245;ABP=301.93;AC=6;AF=0.75;AN=8;AO=124;CIGAR=1X6M;DP=514;DPB=514;DPRA=0;EPP=272.273;EPPR=120.27;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4709;QR=2092;RO=54;RPL=0;RPP=272.273;RPPR=120.27;RPR=124;RUN=1;SAF=124;SAP=272.273;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:136:33,82,20:33:1275:82,20:3201,756:-253.202,0,-80.0323,-201.171,-42.7531,-299.862 1|1:174:3,97,68:3:115:97,68:3807,2567:-513.12,-200.928,-181.167,-303.655,0,-292.623 1|1:151:10,108,31:10:392:108,31:4251,1192:-412.314,-65.6179,-65.3446,-317.466,0,-340.37 0|1:53:8,40,5:8:310:40,5:1563,194:-126.082,0,-13.426,-112.551,-9.52701,-136.513 dDocent_Contig_2145 32 . C A 10404.1 . AB=0.676171;ABP=135.373;AC=4;AF=0.5;AN=8;AO=332;CIGAR=1X;DP=491;DPB=491;DPRA=0;EPP=723.939;EPPR=348.274;GTI=0;LEN=1;MEANALT=1;MQM=59.2651;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=13265;QR=6377;RO=159;RPL=0;RPP=723.939;RPPR=348.274;RPR=332;RUN=1;SAF=332;SAP=723.939;SAR=0;SRF=159;SRP=348.274;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:225:69,156:69:2772:156:6281:-496.606,0,-181.854 0/1:175:48,127:48:1936:127:5045:-401.134,0,-121.753 0/1:64:38,26:38:1518:26:1030:-73.7104,0,-117.596 0/1:27:4,23:4:151:23:909:-73.9458,0,-5.82806 dDocent_Contig_2147 8 . C A 4134.5 . AB=0.0508475;ABP=106.394;AC=0;AF=0;AN=8;AO=3;CIGAR=1X3M1X;DP=241;DPB=244;DPRA=0;EPP=9.52472;EPPR=213.643;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=119;QR=3785;RO=97;RPL=0;RPP=9.52472;RPPR=213.643;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=97;SRP=213.643;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:59:22,3,33:22:863:3,33:119,1328:-102.827,-99.6543,-169.721,0,-61.175,-61.0375 0|0:63:24,0,36:24:948:0,36:0,1461:-113.315,-120.54,-198.548,0,-78.048,-67.211 0|0:69:26,0,43:26:1003:0,43:0,1686:-131.197,-139.024,-221.386,0,-82.7498,-69.8055 0|0:50:25,0,25:25:971:0,25:0,954:-71.1008,-78.6265,-158.415,0,-80.1729,-72.6471 dDocent_Contig_2148 88 . G A 231.749 . AB=0.289474;ABP=17.6392;AC=1;AF=0.125;AN=8;AO=12;CIGAR=1X;DP=93;DPB=93;DPRA=2;EPP=29.068;EPPR=178.9;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=427;QR=2805;RO=81;RPL=12;RPP=29.068;RPPR=178.9;RPR=0;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=81;SRP=178.9;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:17:17,0:17:589:0:0:0,-5.11751,-53.3369 0/1:38:27,11:27:929:11:393:-24.2718,0,-72.4851 0/0:24:23,1:23:799:1:34:0,-3.82581,-68.8312 0/0:14:14,0:14:488:0:0:0,-4.21442,-44.2517 dDocent_Contig_2149 38 . T C 100.258 . AB=0.2;ABP=26.4622;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=85;DPB=85;DPRA=1.23684;EPP=18.2106;EPPR=172.385;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.987179;PAO=0;PQA=0;PQR=0;PRO=0;QA=255;QR=3118;RO=78;RPL=0;RPP=18.2106;RPPR=172.385;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=78;SRP=172.385;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:22:22,0:22:898:0:0:0,-6.62266,-81.1241 0/0:16:16,0:16:634:0:0:0,-4.81648,-57.393 0/1:30:24,6:24:952:6:220:-11.1226,0,-76.952 0/0:17:16,1:16:634:1:35:0,-1.61888,-53.8937 dDocent_Contig_2150 16 . C A 2579.67 . AB=0.284457;ABP=140.615;AC=4;AF=0.5;AN=8;AO=97;CIGAR=2X2M2X6M1X2M;DP=341;DPB=341;DPRA=0;EPP=213.643;EPPR=348.274;GTI=0;LEN=1;MEANALT=4.75;MQM=58.3196;MQMR=60;NS=4;NUMALT=5;ODDS=0;PAIRED=0.773196;PAIREDR=0.924528;PAO=0;PQA=0;PQR=0;PRO=0;QA=3785;QR=6209;RO=159;RPL=0;RPP=213.643;RPPR=348.274;RPR=97;RUN=1;SAF=97;SAP=213.643;SAR=0;SRF=159;SRP=348.274;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:74:42,4,10,0,0,15:42:1649:4,10,0,0,15:110,350,0,0,604:-37.1079,-42.1527,-176.573,-21.3803,-149.406,-154.002,-49.7512,-177.777,-157.012,-185.385,-49.7512,-177.777,-157.012,-185.385,-185.385,0,-128.056,-107.29,-135.662,-135.662,-131.146 0|1:96:47,12,11,0,0,23:47:1844:12,11,0,0,23:395,386,0,0,912:-60.8737,-46.3535,-194.395,-43.633,-166.621,-191.985,-75.0221,-198.008,-195.297,-226.685,-75.0221,-198.008,-195.297,-226.685,-226.685,0,-123.013,-120.299,-151.688,-151.688,-144.764 0|1:85:31,10,3,6,7,27:31:1208:10,3,6,7,27:301,112,207,268,1031:-75.2002,-63.1741,-159.456,-75.3611,-153.297,-173.757,-69.3376,-147.273,-159.465,-166.829,-62.6398,-140.579,-152.771,-146.746,-159.834,0,-77.9641,-90.1516,-84.1281,-77.4312,-91.1944 0|1:86:39,4,3,8,0,32:39:1508:4,3,8,0,32:110,115,279,0,1238:-89.7745,-93.9102,-216.569,-92.0744,-208.334,-215.04,-80.5682,-196.825,-194.994,-202.025,-101.515,-217.773,-215.943,-204.433,-225.382,0,-116.303,-114.469,-102.962,-123.909,-114.276 dDocent_Contig_2151 209 . N G 146.93 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=159;QR=0;RO=0;RPL=4;RPP=11.6962;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:4:0,4:0:0:4:159:-14.692,-1.20412,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_2152 109 . G C 39.4604 . AB=0.142857;ABP=49.5419;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=251;DPB=251;DPRA=0.602871;EPP=16.0391;EPPR=535.021;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=193;QR=8192;RO=245;RPL=0;RPP=16.0391;RPPR=535.021;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=535.021;SRR=245;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:99:99,0:99:3310:0:0:0,-29.802,-298.129 0/0:90:90,0:90:3026:0:0:0,-27.0927,-272.583 0/1:42:36,6:36:1197:6:193:-5.0429,0,-95.3801 0/0:20:20,0:20:659:0:0:0,-6.0206,-59.6191 dDocent_Contig_2153 10 . T G 52881.1 . AB=0.801676;ABP=1134.99;AC=5;AF=0.625;AN=8;AO=1634;CIGAR=1X;DP=1957;DPB=1957;DPRA=0;EPP=3551.2;EPPR=700.053;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.999388;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=65160;QR=12843;RO=321;RPL=0;RPP=3551.2;RPPR=700.053;RPR=1634;RUN=1;SAF=1634;SAP=3551.2;SAR=0;SRF=321;SRP=700.053;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:768:181,586:181:7298:586:23410:-1873.59,0,-425.176 1/1:525:38,486:38:1512:486:19466:-1613.96,-21.5293,0 0/1:415:48,367:48:1902:367:14526:-1181.31,0,-46.4446 0/1:249:54,195:54:2131:195:7758:-622.847,0,-117.014 dDocent_Contig_2154 131 . A G 2461.3 . AB=0.429224;ABP=12.539;AC=4;AF=0.5;AN=8;AO=94;CIGAR=1X;DP=219;DPB=219;DPRA=0;EPP=207.129;EPPR=274.444;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3509;QR=4786;RO=125;RPL=0;RPP=207.129;RPPR=274.444;RPR=94;RUN=1;SAF=0;SAP=207.129;SAR=94;SRF=0;SRP=274.444;SRR=125;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:80:42,38:42:1604:38:1431:-104.982,0,-120.541 0/1:66:45,21:45:1728:21:800:-52.4561,0,-135.908 0/1:58:28,30:28:1064:30:1102:-82.0135,0,-78.6037 0/1:15:10,5:10:390:5:176:-11.6676,0,-30.9433 dDocent_Contig_2155 65 . G A 5157.33 . AB=0.83871;ABP=219.247;AC=4;AF=0.5;AN=8;AO=182;CIGAR=1X;DP=217;DPB=217;DPRA=0;EPP=398.218;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6499;QR=1267;RO=35;RPL=182;RPP=398.218;RPPR=79.0118;RPR=0;RUN=1;SAF=182;SAP=398.218;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:85:14,71:14:502:71:2539:-203.163,0,-19.9272 0/1:61:10,51:10:364:51:1780:-142.108,0,-14.7433 0/1:47:5,42:5:184:42:1518:-122.759,0,-2.77001 0/1:24:6,18:6:217:18:662:-52.6883,0,-12.6566 dDocent_Contig_2156 35 . T G 142.376 . AB=0.125;ABP=130.041;AC=3;AF=0.375;AN=8;AO=14;CIGAR=1X;DP=139;DPB=139;DPRA=0;EPP=33.4109;EPPR=274.444;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=559;QR=4950;RO=125;RPL=0;RPP=33.4109;RPPR=274.444;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=125;SRP=274.444;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:45:37,8:37:1486:8:313:-14.9865,0,-120.437 0/1:36:33,3:33:1300:3:123:-0.627708,0,-106.42 0/0:35:34,1:34:1335:1:41:0,-6.44148,-116.307 0/1:23:21,2:21:829:2:82:-0.855988,0,-68.0011 dDocent_Contig_2157 10 . T A 8858.22 . AB=0.0277778;ABP=839.751;AC=0;AF=0;AN=8;AO=12;CIGAR=1X2M1X;DP=755;DPB=782;DPRA=0;EPP=29.068;EPPR=697.881;GTI=0;LEN=1;MEANALT=6.5;MQM=60;MQMR=60;NS=4;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=0.959375;PAO=0;PQA=0;PQR=0;PRO=0;QA=484;QR=12792;RO=320;RPL=0;RPP=29.068;RPPR=697.881;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=320;SRP=697.881;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:216:88,11,5,20,80:88:3514:11,5,20,80:443,199,804,3225:-239.325,-229.303,-515.401,-249.43,-502.327,-537.335,-199.56,-452.457,-472.584,-482.949,0,-252.897,-273.024,-223.154,-265.327 0|0:261:133,0,23,10,91:133:5319:0,23,10,91:0,924,381,3686:-263.911,-303.948,-742.079,-227.808,-665.939,-659.015,-272.71,-710.84,-634.699,-707.829,0,-438.137,-361.996,-406.897,-410.743 0|0:216:68,1,22,24,98:68:2719:1,22,24,98:41,870,949,3942:-304.39,-321.476,-545.134,-253.266,-473.84,-470.602,-246.769,-467.343,-399.133,-463.503,0,-220.577,-152.367,-145.87,-194.46 0|0:62:31,0,0,3,28:31:1240:0,0,3,28:0,0,122,1123:-83.1858,-92.5177,-194.661,-92.5177,-194.661,-194.661,-82.4539,-184.597,-184.597,-183.694,0,-102.138,-102.138,-92.0738,-93.7088 dDocent_Contig_2158 73 . G A 17121.5 . AB=0.534259;ABP=14.0205;AC=4;AF=0.5;AN=8;AO=577;CIGAR=1X1M;DP=1080;DPB=1080;DPRA=0;EPP=1255.95;EPPR=749.997;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=22181;QR=13001;RO=344;RPL=577;RPP=1255.95;RPPR=749.997;RPR=0;RUN=1;SAF=577;SAP=1255.95;SAR=0;SRF=344;SRP=749.997;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:445:170,73,202:170:6461:73,202:2821,7780:-587.538,-407.023,-914.906,0,-298.164,-469.048 0|1:259:50,40,169:50:1879:40,169:1542,6502:-518.708,-407.145,-549.034,0,-27.3085,-103.054 0|1:243:93,27,123:93:3506:27,123:1022,4728:-360.1,-304.317,-583.497,0,-203.53,-250.283 0|1:133:31,19,83:31:1155:19,83:734,3171:-250.792,-199.844,-288.663,0,-34.2484,-69.5468 dDocent_Contig_2160 16 . G A 2229.99 . AB=0.181955;ABP=587.28;AC=3;AF=0.375;AN=8;AO=137;CIGAR=1X;DP=891;DPB=891;DPRA=0;EPP=300.502;EPPR=1640.3;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5370;QR=29996;RO=754;RPL=0;RPP=300.502;RPPR=1640.3;RPR=137;RUN=1;SAF=137;SAP=300.502;SAR=0;SRF=754;SRP=1640.3;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:249:216,33:216:8656:33:1304:-42.6613,0,-703.564 0/0:226:210,16:210:8352:16:636:0,-10.4599,-693.643 0/1:289:219,70:219:8703:70:2703:-156.406,0,-695.798 0/1:127:109,18:109:4285:18:727:-27.5239,0,-347.386 dDocent_Contig_2161 107 . N A 699.447 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=25;CIGAR=1X2M1X;DP=25;DPB=25;DPRA=0;EPP=57.2971;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=762;QR=0;RO=0;RPL=0;RPP=57.2971;RPPR=0;RPR=25;RUN=1;SAF=0;SAP=57.2971;SAR=25;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:13:0,13:0:0:13:401:-36.3892,-3.91339,0 1|1:8:0,8:0:0:8:244:-22.2587,-2.40824,0 1|1:4:0,4:0:0:4:117:-10.8192,-1.20412,0 .:.:.:.:.:.:.:. dDocent_Contig_2162 116 . G A 245.819 . AB=0.392857;ABP=5.80219;AC=1;AF=0.125;AN=8;AO=12;CIGAR=1X;DP=98;DPB=98;DPRA=3.9;EPP=29.068;EPPR=187.585;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=407;QR=2904;RO=85;RPL=0;RPP=29.068;RPPR=187.585;RPR=12;RUN=1;SAF=0;SAP=29.068;SAR=12;SRF=0;SRP=187.585;SRR=85;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:17,11:17:584:11:372:-25.3777,0,-44.4552 0/0:50:48,1:48:1639:1:35:0,-11.6017,-144.299 0/0:9:9,0:9:311:0:0:0,-2.70927,-28.3252 0/0:11:11,0:11:370:0:0:0,-3.31133,-33.6253 dDocent_Contig_2163 10 . T A 9214.61 . AB=0.563433;ABP=21.7433;AC=4;AF=0.5;AN=8;AO=302;CIGAR=1X;DP=536;DPB=536;DPRA=0;EPP=658.795;EPPR=511.135;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=12083;QR=9350;RO=234;RPL=0;RPP=658.795;RPPR=511.135;RPR=302;RUN=1;SAF=302;SAP=658.795;SAR=0;SRF=234;SRP=511.135;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:158:89,69:89:3566:69:2767:-201.58,0,-273.403 0/1:150:55,95:55:2210:95:3794:-296.308,0,-153.907 0/1:144:61,83:61:2423:83:3338:-257.111,0,-174.864 0/1:84:29,55:29:1151:55:2184:-171.452,0,-78.5848 dDocent_Contig_2164 28 . A G 4376.72 . AB=0.206691;ABP=1253.91;AC=4;AF=0.5;AN=8;AO=346;CIGAR=1X;DP=1674;DPB=1674;DPRA=0;EPP=754.34;EPPR=2886.73;GTI=0;LEN=1;MEANALT=1;MQM=36.8642;MQMR=52.3366;NS=4;NUMALT=1;ODDS=0;PAIRED=0.479769;PAIREDR=0.850151;PAO=0;PQA=0;PQR=0;PRO=0;QA=13706;QR=52743;RO=1328;RPL=0;RPP=754.34;RPPR=2886.73;RPR=346;RUN=1;SAF=346;SAP=754.34;SAR=0;SRF=1328;SRP=2886.73;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:521:404,117:404:16024:117:4631:-165.513,0,-1220.17 0/1:468:402,66:402:15969:66:2615:-50.5718,0,-1244.16 0/1:521:395,126:395:15707:126:4968:-180.624,0,-1217.26 0/1:164:127,37:127:5043:37:1492:-45.9529,0,-379.23 dDocent_Contig_2165 58 . A G 616.024 . AB=0.280899;ABP=40.1205;AC=1;AF=0.125;AN=8;AO=38;CIGAR=1X;DP=273;DPB=273;DPRA=0;EPP=85.5263;EPPR=513.306;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1491;QR=9313;RO=235;RPL=38;RPP=85.5263;RPPR=513.306;RPR=0;RUN=1;SAF=38;SAP=85.5263;SAR=0;SRF=235;SRP=513.306;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:99:91,8:91:3574:8:325:0,-0.182335,-292.071 0/1:89:64,25:64:2563:25:991:-62.6965,0,-204.005 0/0:57:53,4:53:2106:4:147:0,-3.57361,-176.137 0/0:28:27,1:27:1070:1:28:0,-5.62911,-93.7896 dDocent_Contig_2166 32 . A G 156.836 . AB=0.216216;ABP=28.8919;AC=2;AF=0.25;AN=8;AO=8;CIGAR=1X;DP=78;DPB=78;DPRA=0.902439;EPP=20.3821;EPPR=155.013;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=314;QR=2775;RO=70;RPL=0;RPP=20.3821;RPPR=155.013;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=70;SRP=155.013;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:31:31,0:31:1212:0:0:0,-9.33193,-109.344 0/1:26:21,5:21:844:5:196:-10.1863,0,-68.446 0/1:11:8,3:8:318:3:118:-7.69118,0,-25.6745 0/0:10:10,0:10:401:0:0:0,-3.0103,-36.4495 dDocent_Contig_2167 12 . A G 100.852 . AB=0.208333;ABP=20.744;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=84;DPB=84;DPRA=1.2;EPP=13.8677;EPPR=174.557;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.974684;PAO=0;PQA=0;PQR=0;PRO=0;QA=197;QR=3144;RO=79;RPL=0;RPP=13.8677;RPPR=174.557;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=79;SRP=174.557;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:19,5:19:771:5:197:-10.8811,0,-62.4845 0/0:20:20,0:20:799:0:0:0,-6.0206,-72.2253 0/0:20:20,0:20:777:0:0:0,-6.0206,-70.2406 0/0:20:20,0:20:797:0:0:0,-6.0206,-72.0481 dDocent_Contig_2168 8 . C A 13494.1 . AB=0.737342;ABP=157.625;AC=6;AF=0.75;AN=8;AO=430;CIGAR=1X;DP=523;DPB=523;DPRA=0;EPP=936.743;EPPR=202.786;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=16427;QR=3514;RO=92;RPL=0;RPP=936.743;RPPR=202.786;RPR=430;RUN=1;SAF=430;SAP=936.743;SAR=0;SRF=92;SRP=202.786;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:125:8,117:8:309:117:4495:-376.428,-9.45578,0 0/1:185:53,132:53:2025:132:5030:-397.027,0,-126.794 0/1:131:30,101:30:1141:101:3887:-310.495,0,-63.5541 1/1:82:1,80:1:39:80:3015:-267.653,-20.8467,0 dDocent_Contig_2169 13 . C T 16690.5 . AB=0.16129;ABP=1176.87;AC=7;AF=0.875;AN=8;AO=190;CIGAR=1X3M1X4M;DP=1178;DPB=1175.78;DPRA=0;EPP=415.59;EPPR=191.928;GTI=0;LEN=1;MEANALT=11.75;MQM=59.4105;MQMR=60;NS=4;NUMALT=6;ODDS=0;PAIRED=0;PAIREDR=0.965517;PAO=0;PQA=0;PQR=0;PRO=0;QA=7412;QR=3345;RO=87;RPL=0;RPP=415.59;RPPR=191.928;RPR=190;RUN=1;SAF=190;SAP=415.59;SAR=0;SRF=87;SRP=191.928;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:428:27,22,165,61,48,50,40:27:1045:22,165,61,48,50,40:859,6550,2396,1846,1942,1611:-641.636,-581.781,-660.995,-111.086,-128.941,-147.254,-452.842,-470.696,0,-520.316,-498.219,-516.073,-45.3782,-387.134,-569.607,-490.615,-508.47,-37.7744,-379.53,-424.908,-561.401,-516.983,-534.837,-64.1412,-405.898,-451.275,-443.672,-590.779 1|1:397:21,6,171,52,50,38,41:21:800:6,171,52,50,38,41:234,6768,2036,1944,1490,1617:-652.172,-640.171,-703.984,-101.784,-149.08,-115.927,-491.092,-538.388,0,-541.057,-498.746,-546.042,-7.65441,-396.963,-549.314,-536.027,-583.323,-44.9354,-434.244,-441.898,-590.207,-525.46,-572.756,-34.3681,-423.677,-431.331,-468.613,-578.737 1|1:228:27,0,52,50,47,20,16:27:1040:0,52,50,47,20,16:0,2055,1941,1820,777,613:-234.971,-243.099,-328.491,-74.021,-159.414,-143.76,-83.6861,-169.078,0,-154.027,-93.5986,-178.991,-9.91264,-19.5782,-164.843,-179.512,-264.905,-95.8268,-105.492,-115.404,-258.884,-192.801,-278.194,-109.116,-118.781,-128.693,-214.607,-273.377 1|0:125:12,0,27,27,16,31,4:12:460:0,27,27,16,31,4:0,1065,1039,621,1208,157:-145.26,-148.873,-186.625,-61.3971,-99.1495,-91.0217,-63.5729,-101.325,-13.8492,-93.1972,-97.8491,-135.601,-48.1255,-50.3015,-130.785,-49.7241,-87.4763,0,-2.17663,-36.4526,-78.1444,-135.96,-173.712,-86.2367,-88.4123,-122.689,-74.5636,-172.508 dDocent_Contig_2170 30 . A G 6442.68 . AB=0.541436;ABP=5.70964;AC=5;AF=0.625;AN=8;AO=197;CIGAR=1X;DP=282;DPB=282;DPRA=0;EPP=430.79;EPPR=185.414;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.988095;PAO=0;PQA=0;PQR=0;PRO=0;QA=7883;QR=3328;RO=84;RPL=0;RPP=430.79;RPPR=185.414;RPR=197;RUN=1;SAF=197;SAP=430.79;SAR=0;SRF=84;SRP=185.414;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:101:2,99:2:82:99:3962:-348.785,-22.6244,0 0/1:90:36,53:36:1424:53:2141:-165.663,0,-101.222 0/1:58:29,29:29:1138:29:1155:-86.773,0,-85.2379 0/1:33:17,16:17:684:16:625:-46.6391,0,-51.9559 dDocent_Contig_2171 32 . C T 8169.27 . AB=0.845188;ABP=250.367;AC=5;AF=0.625;AN=8;AO=248;CIGAR=1X;DP=287;DPB=287;DPRA=0;EPP=541.535;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=9986;QR=1567;RO=39;RPL=0;RPP=541.535;RPPR=87.6977;RPR=248;RUN=1;SAF=248;SAP=541.535;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:92:10,82:10:403:82:3309:-270.162,0,-8.93531 0/1:85:7,78:7:285:78:3131:-256.263,0,-0.436856 1/1:48:2,46:2:82:46:1853:-159.196,-6.66976,0 0/1:62:20,42:20:797:42:1693:-133.925,0,-53.3848 dDocent_Contig_2172 98 . N A 744.771 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=24;CIGAR=1X;DP=24;DPB=24;DPRA=0;EPP=55.1256;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=19.8544;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=824;QR=0;RO=0;RPL=24;RPP=55.1256;RPPR=0;RPR=0;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:24:0,24:0:0:24:824:-74.4771,-7.22472,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_2173 124 . G A 11336.9 . AB=0.851613;ABP=335.904;AC=6;AF=0.75;AN=8;AO=403;CIGAR=1X;DP=462;DPB=462;DPRA=0;EPP=878.114;EPPR=131.127;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=14088;QR=2045;RO=59;RPL=0;RPP=878.114;RPPR=131.127;RPR=403;RUN=1;SAF=0;SAP=878.114;SAR=403;SRF=0;SRP=131.127;SRR=59;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:129:15,114:15:529:114:3948:-316.66,0,-9.10853 0/1:181:31,150:31:1084:150:5301:-422.743,0,-43.3808 1/1:86:8,78:8:253:78:2693:-219.533,-2.81152,0 1/1:66:5,61:5:179:61:2146:-176.946,-3.40759,0 dDocent_Contig_2174 10 . G A 394.621 . AB=0.135135;ABP=259.714;AC=2;AF=0.25;AN=8;AO=33;CIGAR=1X;DP=354;DPB=354;DPRA=0;EPP=74.6689;EPPR=700.053;GTI=0;LEN=1;MEANALT=1;MQM=59.8485;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.939394;PAIREDR=0.94704;PAO=0;PQA=0;PQR=0;PRO=0;QA=1321;QR=12916;RO=321;RPL=0;RPP=74.6689;RPPR=700.053;RPR=33;RUN=1;SAF=33;SAP=74.6689;SAR=0;SRF=321;SRP=700.053;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:89:87,2:87:3519:2:82:0,-19.012,-308.946 0/1:126:111,15:111:4460:15:606:-16.9481,0,-363.391 0/1:96:81,15:81:3243:15:592:-24.7079,0,-263.022 0/0:43:42,1:42:1694:1:41:0,-8.84972,-148.586 dDocent_Contig_2175 29 . C T 1000.58 . AB=0.0612245;ABP=166.89;AC=0;AF=0;AN=8;AO=10;CIGAR=5M2D2M4D1M1X1M1X;DP=360;DPB=364.941;DPRA=0.739496;EPP=24.725;EPPR=637.08;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=394;QR=11472;RO=292;RPL=0;RPP=24.725;RPPR=637.08;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=292;SRP=637.08;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:98:70,6,22:70:2747:6,22:239,821:-46.1034,-47.4898,-271.611,0,-206.227,-219.285 0|0:119:111,0,0:111:4368:0,0:0,0:0,-33.4143,-392.772,-33.4143,-392.772,-392.772 0|0:65:41,0,22:41:1614:0,22:0,834:-56.1483,-68.4905,-201.282,0,-132.921,-126.299 0|0:78:70,4,2:70:2743:4,2:155,81:0,-8.30697,-232.718,-14.3767,-227.243,-239.374 dDocent_Contig_2176 20 . A G 229.14 . AB=0.155556;ABP=95.7563;AC=1;AF=0.125;AN=8;AO=23;CIGAR=1X;DP=252;DPB=252;DPRA=2.29167;EPP=52.9542;EPPR=500.277;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=902;QR=8870;RO=229;RPL=0;RPP=52.9542;RPPR=500.277;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=229;SRP=500.277;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:72:68,4:68:2645:4:159:0,-6.98333,-223.501 0/0:32:32,0:32:1221:0:0:0,-9.63296,-110.163 0/1:90:76,14:76:2950:14:564:-24.0105,0,-238.531 0/0:58:53,5:53:2054:5:179:0,-1.00724,-168.617 dDocent_Contig_2177 1 . N G 76.9006 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=4.60517;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:81:-7.68573,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_2178 23 . C G 2746.15 . AB=0.4;ABP=24.2907;AC=4;AF=0.5;AN=8;AO=98;CIGAR=1X;DP=245;DPB=245;DPRA=0;EPP=215.815;EPPR=322.217;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3913;QR=5952;RO=147;RPL=0;RPP=215.815;RPPR=322.217;RPR=98;RUN=1;SAF=98;SAP=215.815;SAR=0;SRF=147;SRP=322.217;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:69:36,33:36:1461:33:1309:-97.2983,0,-110.962 0/1:57:38,19:38:1545:19:753:-50.9319,0,-122.124 0/1:66:36,30:36:1451:30:1201:-88.4964,0,-110.97 0/1:53:37,16:37:1495:16:650:-42.8784,0,-118.837 dDocent_Contig_2179 10 . C A 255.935 . AB=0.2;ABP=49.9141;AC=1;AF=0.125;AN=8;AO=12;CIGAR=1X;DP=161;DPB=161;DPRA=1.78218;EPP=29.068;EPPR=326.56;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=490;QR=6002;RO=149;RPL=0;RPP=29.068;RPPR=326.56;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=149;SRP=326.56;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:60:48,12:48:1942:12:490:-26.3893,0,-156.902 0/0:60:60,0:60:2428:0:0:0,-18.0618,-218.658 0/0:26:26,0:26:1043:0:0:0,-7.82678,-94.1596 0/0:15:15,0:15:589:0:0:0,-4.51545,-53.3415 dDocent_Contig_2180 11 . T C 604.683 . AB=0.119675;ABP=622.408;AC=4;AF=0.5;AN=8;AO=59;CIGAR=1X;DP=493;DPB=493;DPRA=0;EPP=131.127;EPPR=943.258;GTI=0;LEN=1;MEANALT=1.25;MQM=59.7627;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.872979;PAO=0;PQA=0;PQR=0;PRO=0;QA=2362;QR=17328;RO=433;RPL=0;RPP=131.127;RPPR=943.258;RPR=59;RUN=1;SAF=59;SAP=131.127;SAR=0;SRF=433;SRP=943.258;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:199:174,25:174:6986:25:998:-30.1773,0,-568.484 0/1:169:150,18:150:6006:18:717:-13.9439,0,-489.397 0/1:96:85,11:85:3379:11:446:-11.5967,0,-275.257 0/1:29:24,5:24:957:5:201:-9.74014,0,-77.7027 dDocent_Contig_2182 115 . C T 249.253 . AB=0.588235;ABP=4.1599;AC=1;AF=0.125;AN=8;AO=11;CIGAR=1X;DP=60;DPB=60;DPRA=1.14286;EPP=26.8965;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=368;QR=1646;RO=49;RPL=0;RPP=26.8965;RPPR=109.412;RPR=11;RUN=1;SAF=0;SAP=26.8965;SAR=11;SRF=0;SRP=109.412;SRR=49;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:7,10:7:239:10:339:-25.7211,0,-16.7261 0/0:15:14,1:14:485:1:29:0,-1.61579,-41.0806 0/0:14:14,0:14:473:0:0:0,-4.21442,-42.893 0/0:14:14,0:14:449:0:0:0,-4.21442,-40.7165 dDocent_Contig_2183 176 . C T 837.606 . AB=0.367816;ABP=16.2139;AC=2;AF=0.25;AN=8;AO=32;CIGAR=1X;DP=134;DPB=134;DPRA=1.85106;EPP=72.4974;EPPR=224.5;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1239;QR=4057;RO=102;RPL=32;RPP=72.4974;RPPR=224.5;RPR=0;RUN=1;SAF=0;SAP=72.4974;SAR=32;SRF=0;SRP=224.5;SRR=102;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:21:21,0:21:837:0:0:0,-6.32163,-75.6413 0/1:47:20,27:20:801:27:1058:-81.3578,0,-58.2576 0/1:40:35,5:35:1372:5:181:-4.59658,0,-111.693 0/0:26:26,0:26:1047:0:0:0,-7.82678,-94.5177 dDocent_Contig_2184 37 . C A 4052.82 . AB=0.761905;ABP=103.105;AC=4;AF=0.5;AN=8;AO=128;CIGAR=1X;DP=168;DPB=168;DPRA=0;EPP=280.959;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5107;QR=1564;RO=40;RPL=0;RPP=280.959;RPPR=89.8692;RPR=128;RUN=1;SAF=128;SAP=280.959;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:65:22,43:22:861:43:1716:-135.096,0,-58.2336 0/1:52:5,47:5:185:47:1882:-153.935,0,-1.34983 0/1:29:9,20:9:361:20:797:-63.3203,0,-24.1236 0/1:22:4,18:4:157:18:712:-57.7853,0,-7.88563 dDocent_Contig_2185 7 . T C 36317.3 . AB=0.764437;ABP=1065.31;AC=4;AF=0.5;AN=8;AO=1337;CIGAR=1X;DP=1749;DPB=1749;DPRA=0;EPP=2906.27;EPPR=893.314;GTI=0;LEN=1;MEANALT=1.5;MQM=40.5707;MQMR=59.9341;NS=4;NUMALT=1;ODDS=0;PAIRED=0.365744;PAIREDR=0.202439;PAO=0;PQA=0;PQR=0;PRO=0;QA=51176;QR=15618;RO=410;RPL=0;RPP=2906.27;RPPR=893.314;RPR=1337;RUN=1;SAF=1337;SAP=2906.27;SAR=0;SRF=410;SRP=893.314;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:489:115,374:115:4348:374:14303:-998.556,0,-244.112 0/1:506:130,375:130:4979:375:14394:-1041.88,0,-295.996 0/1:476:94,382:94:3622:382:14637:-1034.1,0,-182.799 0/1:278:71,206:71:2669:206:7842:-562.19,0,-156.672 dDocent_Contig_2187 111 . G A 236.513 . AB=0.229508;ABP=41.7764;AC=2;AF=0.25;AN=8;AO=14;CIGAR=1X;DP=87;DPB=87;DPRA=2.34615;EPP=33.4109;EPPR=161.528;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=469;QR=2357;RO=73;RPL=0;RPP=33.4109;RPPR=161.528;RPR=14;RUN=1;SAF=0;SAP=33.4109;SAR=14;SRF=0;SRP=161.528;SRR=73;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:18,11:18:558:11:365:-24.4421,0,-41.783 0/0:14:14,0:14:472:0:0:0,-4.21442,-42.8015 0/1:32:29,3:29:919:3:104:-0.0701319,0,-73.3662 0/0:12:12,0:12:408:0:0:0,-3.61236,-37.0467 dDocent_Contig_2189 34 . T C 44.0555 . AB=0.0990099;ABP=144.07;AC=1;AF=0.125;AN=8;AO=33;CIGAR=1X;DP=624;DPB=624;DPRA=0;EPP=74.6689;EPPR=1286.35;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1327;QR=23464;RO=591;RPL=0;RPP=74.6689;RPPR=1286.35;RPR=33;RUN=1;SAF=33;SAP=74.6689;SAR=0;SRF=591;SRP=1286.35;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:230:221,9:221:8802:9:362:0,-36.2925,-758.749 0/0:168:160,8:160:6369:8:325:0,-20.9536,-543.332 0/0:125:119,6:119:4696:6:245:0,-15.1993,-400.146 0/1:101:91,10:91:3597:10:395:-5.50244,0,-293.371 dDocent_Contig_2190 126 . G C 2783.33 . AB=0.583333;ABP=13.8677;AC=4;AF=0.5;AN=8;AO=105;CIGAR=1X;DP=180;DPB=180;DPRA=0;EPP=231.015;EPPR=163.699;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3725;QR=2537;RO=74;RPL=0;RPP=231.015;RPPR=163.699;RPR=105;RUN=1;SAF=0;SAP=231.015;SAR=105;SRF=0;SRP=163.699;SRR=74;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:58:14,44:14:485:44:1532:-120.702,0,-26.517 0/1:70:42,28:42:1423:28:990:-68.3344,0,-107.276 0/1:42:17,24:17:593:24:870:-66.1487,0,-41.2197 0/1:10:1,9:1:36:9:333:-27.3119,0,-0.587975 dDocent_Contig_2191 87 . T C 184.984 . AB=0.3;ABP=13.4334;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X;DP=77;DPB=77;DPRA=1.91489;EPP=22.5536;EPPR=150.67;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=311;QR=2294;RO=68;RPL=9;RPP=22.5536;RPPR=150.67;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=68;SRP=150.67;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:21,9:21:704:9:311:-19.2943,0,-54.6436 0/0:19:19,0:19:654:0:0:0,-5.71957,-59.1831 0/0:15:15,0:15:515:0:0:0,-4.51545,-46.677 0/0:13:13,0:13:421:0:0:0,-3.91339,-38.201 dDocent_Contig_2192 7 . T G 42.6297 . AB=0.128205;ABP=49.8362;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=116;DPB=116;DPRA=1.51948;EPP=13.8677;EPPR=218.69;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.945946;PAO=0;PQA=0;PQR=0;PRO=0;QA=186;QR=4226;RO=111;RPL=0;RPP=13.8677;RPPR=244.044;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=108;SRP=218.69;SRR=3;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:44:44,0:44:1672:0:0:0,-13.2453,-150.742 0/1:39:34,5:34:1296:5:186:-5.35985,0,-105.189 0/0:11:11,0:11:418:0:0:0,-3.31133,-37.9704 0/0:22:22,0:22:840:0:0:0,-6.62266,-75.9203 dDocent_Contig_2193 22 . C T 3460.72 . AB=0.377246;ABP=46.7258;AC=4;AF=0.5;AN=8;AO=126;CIGAR=1X;DP=334;DPB=334;DPRA=0;EPP=276.616;EPPR=454.677;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5006;QR=8263;RO=208;RPL=0;RPP=276.616;RPPR=454.677;RPR=126;RUN=1;SAF=126;SAP=276.616;SAR=0;SRF=208;SRP=454.677;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:105:65,40:65:2613:40:1575:-110.374,0,-203.691 0/1:106:71,35:71:2856:35:1394:-93.799,0,-225.224 0/1:84:48,36:48:1853:36:1427:-103.392,0,-141.7 0/1:39:24,15:24:941:15:610:-43.4972,0,-73.2478 dDocent_Contig_2195 60 . C T 11309.6 . AB=0.890323;ABP=208.123;AC=6;AF=0.75;AN=8;AO=332;CIGAR=1X;DP=350;DPB=350;DPRA=0;EPP=723.939;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=0.843373;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=13152;QR=728;RO=18;RPL=332;RPP=723.939;RPPR=42.0968;RPR=0;RUN=1;SAF=332;SAP=723.939;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:107:10,97:10:405:97:3893:-318.154,0,-4.59983 1/1:131:1,130:1:41:130:5132:-457.647,-35.3404,0 1/1:64:0,64:0:0:64:2531:-227.93,-19.2659,0 0/1:48:7,41:7:282:41:1596:-129.422,0,-11.3032 dDocent_Contig_2196 7 . T C 150.061 . AB=0.119403;ABP=171.607;AC=1;AF=0.125;AN=8;AO=16;CIGAR=1X;DP=331;DPB=331;DPRA=2.04061;EPP=37.7539;EPPR=684.853;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=620;QR=12051;RO=314;RPL=0;RPP=37.7539;RPPR=684.853;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=314;SRP=684.853;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:134:118,16:118:4534:16:620:-15.802,0,-367.773 0/0:79:79,0:79:3024:0:0:0,-23.7814,-272.32 0/0:66:66,0:66:2530:0:0:0,-19.868,-227.899 0/0:52:51,0:51:1963:0:0:0,-15.3525,-176.803 dDocent_Contig_2197 22 . A C 9125.08 . AB=0.325624;ABP=288.514;AC=4;AF=0.5;AN=8;AO=352;CIGAR=1X2M1X;DP=1081;DPB=1081;DPRA=0;EPP=767.369;EPPR=1581.67;GTI=0;LEN=1;MEANALT=1.5;MQM=59.6705;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=13821;QR=28791;RO=727;RPL=0;RPP=767.369;RPPR=1581.67;RPR=352;RUN=1;SAF=352;SAP=767.369;SAR=0;SRF=727;SRP=1581.67;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:367:259,107:259:10291:107:4199:-266.468,0,-814.987 0|1:392:271,121:271:10691:121:4730:-307.341,0,-843.572 0|1:207:119,87:119:4693:87:3446:-247.903,0,-360.027 0|1:115:78,37:78:3116:37:1446:-95.7854,0,-245.912 dDocent_Contig_2198 14 . T C 3746.09 . AB=0.751553;ABP=91.5012;AC=4;AF=0.5;AN=8;AO=121;CIGAR=1X1M1X;DP=161;DPB=161;DPRA=0;EPP=265.758;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1.5;MQM=54.3802;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.991736;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4834;QR=1371;RO=36;RPL=0;RPP=265.758;RPPR=81.1833;RPR=121;RUN=1;SAF=121;SAP=265.758;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:59:18,41,0:18:683:41,0:1643,0:-126.775,0,-44.0357,-132.193,-56.3779,-188.188 0|1:25:5,18,2:5:189:18,2:721,75:-56.9143,0,-10.0751,-52.2793,-9.35241,-67.1652 0|1:58:10,46,0:10:390:46,0:1827,0:-144.266,0,-18.2062,-147.276,-32.0536,-179.333 0|1:19:3,16,0:3:109:16,0:643,0:-51.6434,0,-4.44743,-52.5465,-9.26391,-61.4422 dDocent_Contig_2199 94 . T C 31.2406 . AB=0.131579;ABP=47.8112;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=153;DPB=153;DPRA=0.991304;EPP=13.8677;EPPR=324.388;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.4;PAIREDR=0.918919;PAO=0;PQA=0;PQR=0;PRO=0;QA=167;QR=4966;RO=148;RPL=5;RPP=13.8677;RPPR=324.388;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=148;SRP=324.388;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:38:33,5:33:1109:5:167:-3.91962,0,-88.6711 0/0:64:64,0:64:2167:0:0:0,-19.2659,-195.297 0/0:19:19,0:19:624:0:0:0,-5.71957,-56.4692 0/0:32:32,0:32:1066:0:0:0,-9.63296,-96.2388 dDocent_Contig_2200 27 . A G 6339.71 . AB=0.841667;ABP=124.685;AC=6;AF=0.75;AN=8;AO=193;CIGAR=1X;DP=213;DPB=213;DPRA=0;EPP=422.104;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7506;QR=779;RO=20;RPL=0;RPP=422.104;RPPR=46.4397;RPR=193;RUN=1;SAF=193;SAP=422.104;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:81:10,71:10:394:71:2723:-220.818,0,-11.4292 1/1:54:0,54:0:0:54:2116:-190.629,-16.2556,0 0/1:39:9,30:9:344:30:1191:-95.727,0,-19.5726 1/1:39:1,38:1:41:38:1476:-128.99,-7.6456,0 dDocent_Contig_2201 116 . A T 4304.11 . AB=0.719745;ABP=68.8599;AC=5;AF=0.625;AN=8;AO=170;CIGAR=1X;DP=219;DPB=219;DPRA=0;EPP=372.161;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5480;QR=1567;RO=49;RPL=0;RPP=372.161;RPPR=109.412;RPR=170;RUN=1;SAF=0;SAP=372.161;SAR=170;SRF=0;SRP=109.412;SRR=49;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:82:17,65:17:561:65:2120:-166.383,0,-26.1198 1/1:62:5,57:5:142:57:1858:-154.432,-5.60338,0 0/1:49:19,30:19:595:30:944:-70.4983,0,-39.0983 0/1:26:8,18:8:269:18:558:-42.6895,0,-16.7117 dDocent_Contig_2202 9 . T C 11031.7 . AB=0.567608;ABP=29.7294;AC=4;AF=0.5;AN=8;AO=382;CIGAR=1X;DP=673;DPB=673;DPRA=0;EPP=832.513;EPPR=634.909;GTI=0;LEN=1;MEANALT=1;MQM=51.7775;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.927835;PAO=0;PQA=0;PQR=0;PRO=0;QA=14740;QR=11151;RO=291;RPL=0;RPP=832.513;RPPR=634.909;RPR=382;RUN=1;SAF=382;SAP=832.513;SAR=0;SRF=291;SRP=634.909;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:231:87,144:87:3333:144:5567:-425.559,0,-230.571 0/1:228:116,112:116:4463:112:4314:-314.402,0,-333.089 0/1:137:59,78:59:2252:78:3007:-226.531,0,-161.656 0/1:77:29,48:29:1103:48:1852:-141.672,0,-76.3906 dDocent_Contig_2203 9 . C T 181.064 . AB=0.123288;ABP=182.975;AC=1;AF=0.125;AN=8;AO=27;CIGAR=1X;DP=536;DPB=536;DPRA=1.23392;EPP=61.6401;EPPR=1106.12;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1048;QR=19569;RO=508;RPL=0;RPP=61.6401;RPPR=1106.12;RPR=27;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=508;SRP=1106.12;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:186:177,8:177:6803:8:311:0,-27.6904,-583.794 0/1:146:128,18:128:4942:18:698:-19.2033,0,-400.841 0/0:114:114,0:114:4417:0:0:0,-34.3174,-397.58 0/0:90:89,1:89:3407:1:39:0,-23.1961,-302.863 dDocent_Contig_2204 110 . A G 46.4467 . AB=0.222222;ABP=15.074;AC=2;AF=0.25;AN=8;AO=4;CIGAR=1X;DP=48;DPB=48;DPRA=0.6;EPP=11.6962;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=131;QR=1458;RO=44;RPL=0;RPP=11.6962;RPPR=98.5551;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=98.5551;SRR=44;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:19:19,0:19:636:0:0:0,-5.71957,-57.5551 0/0:11:11,0:11:338:0:0:0,-3.31133,-30.7169 0/1:7:6,1:6:206:1:35:-1.39142,0,-16.7695 0/1:11:8,3:8:278:3:96:-5.64595,0,-22.0466 dDocent_Contig_2205 169 . C T 4233.04 . AB=0.670588;ABP=45.9799;AC=5;AF=0.625;AN=8;AO=159;CIGAR=1M1X4M;DP=215;DPB=211;DPRA=0;EPP=348.274;EPPR=107.241;GTI=0;LEN=1;MEANALT=1.75;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5279;QR=1567;RO=48;RPL=159;RPP=348.274;RPPR=107.241;RPR=0;RUN=1;SAF=0;SAP=348.274;SAR=159;SRF=0;SRP=107.241;SRR=48;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:37:8,0,28:8:266:0,28:0,929:-72.7069,-75.1151,-96.6387,0,-21.4904,-13.0616 1|1:45:0,0,45:0:0:0,45:0,1492:-134.564,-134.564,-134.564,-13.5464,-13.5464,0 0|1:101:36,6,58:36:1181:6,58:193,1944:-146.615,-141.895,-235.501,0,-79.8607,-77.9584 0|1:32:4,0,28:4:120:0,28:0,914:-72.9263,-74.1304,-83.7204,0,-9.89318,-1.46434 dDocent_Contig_2207 72 . G T 308.334 . AB=0.257576;ABP=36.701;AC=1;AF=0.125;AN=8;AO=22;CIGAR=1X;DP=229;DPB=229;DPRA=1.2451;EPP=50.7827;EPPR=452.505;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=744;QR=6716;RO=207;RPL=22;RPP=50.7827;RPPR=452.505;RPR=0;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=207;SRP=452.505;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:61:61,0:61:1971:0:0:0,-18.3628,-177.653 0/0:41:41,0:41:1339:0:0:0,-12.3422,-120.798 0/1:66:49,17:49:1571:17:572:-31.9303,0,-121.801 0/0:61:56,5:56:1835:5:172:0,-2.54464,-149.605 dDocent_Contig_2208 41 . G A 396.298 . AB=0.21978;ABP=65.0762;AC=4;AF=0.5;AN=8;AO=20;CIGAR=1X;DP=91;DPB=91;DPRA=0;EPP=38.1882;EPPR=157.185;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.7;PAIREDR=0.760563;PAO=0;PQA=0;PQR=0;PRO=0;QA=774;QR=2865;RO=71;RPL=1;RPP=38.1882;RPPR=157.185;RPR=19;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=71;SRP=157.185;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:15,3:15:605:3:120:-5.76915,0,-49.3693 0/1:26:17,9:17:689:9:361:-25.0271,0,-54.5116 0/1:26:20,6:20:803:6:221:-12.4113,0,-64.7595 0/1:21:19,2:19:768:2:72:-0.514741,0,-63.1196 dDocent_Contig_2209 30 . G A 6188.61 . AB=0.168731;ABP=618.767;AC=4;AF=0.5;AN=8;AO=109;CIGAR=1X4M;DP=646;DPB=646;DPRA=0;EPP=239.701;EPPR=485.077;GTI=0;LEN=1;MEANALT=4.75;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=0.981651;PAIREDR=0.995495;PAO=0;PQA=0;PQR=0;PRO=0;QA=4296;QR=8750;RO=222;RPL=0;RPP=239.701;RPPR=485.077;RPR=109;RUN=1;SAF=109;SAP=239.701;SAR=0;SRF=222;SRP=485.077;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:204:66,33,73,27:66:2583:33,73,27:1304,2874,1080:-216.512,-129.081,-331.518,0,-105.07,-190.394,-147.417,-252.489,-123.406,-351.66 0|1:164:62,20,45,28:62:2461:20,45,28:796,1777,1112:-127.555,-80.6779,-277.252,0,-137.053,-189.047,-54.6752,-191.728,-111.05,-248.841 0|1:204:62,38,71,30:62:2453:38,71,30:1523,2811,1170:-212.678,-105.864,-296.306,0,-76.4024,-180.507,-135.187,-211.59,-105.725,-328.036 0|1:74:32,5,12,24:32:1253:5,12,24:201,478,934:-67.1052,-60.1728,-161.692,-37.3767,-123.837,-136.789,0,-86.4549,-63.6591,-95.7952 dDocent_Contig_2210 17 . G A 1776.75 . AB=0.512605;ABP=3.17453;AC=4;AF=0.5;AN=8;AO=61;CIGAR=1X;DP=119;DPB=119;DPRA=0;EPP=135.47;EPPR=128.956;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2413;QR=2293;RO=58;RPL=0;RPP=135.47;RPPR=128.956;RPR=61;RUN=1;SAF=61;SAP=135.47;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:13,16:13:513:16:643:-49.471,0,-37.7793 0/1:52:30,22:30:1190:22:872:-63.1348,0,-91.7078 0/1:26:10,16:10:394:16:637:-49.8356,0,-27.9875 0/1:12:5,7:5:196:7:261:-20.2235,0,-14.399 dDocent_Contig_2211 65 . A C 242.701 . AB=0.191176;ABP=59.3408;AC=2;AF=0.25;AN=8;AO=15;CIGAR=1X;DP=152;DPB=152;DPRA=1.77778;EPP=35.5824;EPPR=300.502;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=593;QR=5455;RO=137;RPL=15;RPP=35.5824;RPPR=300.502;RPR=0;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=137;SRP=300.502;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:24:24,0:24:956:0:0:0,-7.22472,-86.3425 0/0:60:58,2:58:2309:2:80:0,-10.47,-200.385 0/1:50:39,11:39:1547:11:435:-24.4519,0,-124.419 0/1:18:16,2:16:643:2:78:-1.98476,0,-52.786 dDocent_Contig_2212 1 . N G 1031.61 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=28;CIGAR=1X;DP=28;DPB=28;DPRA=0;EPP=63.8115;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=0.0357143;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1123;QR=0;RO=0;RPL=0;RPP=63.8115;RPPR=0;RPR=28;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:13:0,13:0:0:13:518:-46.9678,-3.91339,0 1/1:3:0,3:0:0:3:118:-11.0029,-0.90309,0 1/1:7:0,7:0:0:7:282:-25.7526,-2.10721,0 1/1:5:0,5:0:0:5:205:-18.835,-1.50515,0 dDocent_Contig_2213 16 . A G 944.731 . AB=0.121622;ABP=95.0338;AC=0;AF=0;AN=8;AO=9;CIGAR=3M1X5M;DP=132;DPB=98.5556;DPRA=0;EPP=22.5536;EPPR=176.728;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=340;QR=3002;RO=80;RPL=0;RPP=22.5536;RPPR=176.728;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=80;SRP=176.728;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:37:29,8,0:29:1082:8,0:275,0:-13.9408,0,-86.5476,-22.6707,-88.9559,-111.277 0|0:33:14,11,8:14:536:11,8:412,315:-29.5158,0,-40.6688,-7.80774,-18.0618,-49.3912 0|0:41:23,17,1:23:865:17,1:576,25:-39.8475,0,-65.8754,-44.8272,-69.0493,-115.42 0|0:21:14,7,0:14:519:7,0:246,0:-16.1586,0,-40.7271,-20.3731,-42.8343,-62.8497 dDocent_Contig_2214 10 . C A 13198.2 . AB=0.836364;ABP=57.0602;AC=7;AF=0.875;AN=8;AO=386;CIGAR=1X;DP=408;DPB=408;DPRA=0;EPP=841.199;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=15396;QR=892;RO=22;RPL=0;RPP=841.199;RPPR=50.7827;RPR=386;RUN=1;SAF=386;SAP=841.199;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:125:4,121:4:163:121:4832:-419.726,-22.5703,0 1/1:132:7,125:7:286:125:4954:-419.636,-13.6211,0 1/1:96:2,94:2:77:94:3754:-330.562,-21.59,0 0/1:55:9,46:9:366:46:1856:-150.689,0,-16.7485 dDocent_Contig_2215 1 . N G 111.901 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.29832;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=120;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:120:-11.1879,-0.90309,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_2217 39 . T G 2163.67 . AB=0.677966;ABP=35.472;AC=4;AF=0.5;AN=8;AO=80;CIGAR=1X;DP=118;DPB=118;DPRA=0;EPP=176.728;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.947368;PAO=0;PQA=0;PQR=0;PRO=0;QA=2840;QR=1401;RO=38;RPL=0;RPP=176.728;RPPR=85.5263;RPR=80;RUN=1;SAF=80;SAP=176.728;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:47:12,35:12:432:35:1264:-99.9081,0,-25.0672 0/1:44:11,33:11:409:33:1152:-90.7299,0,-23.9111 0/1:17:11,6:11:416:6:199:-13.1174,0,-32.6732 0/1:10:4,6:4:144:6:225:-17.6011,0,-10.3029 dDocent_Contig_2218 20 . A T 1068.98 . AB=0.114878;ABP=1371.17;AC=3;AF=0.375;AN=8;AO=166;CIGAR=1X;DP=1607;DPB=1607;DPRA=0;EPP=363.475;EPPR=3132.1;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.963855;PAIREDR=0.977099;PAO=0;PQA=0;PQR=0;PRO=0;QA=6505;QR=56609;RO=1441;RPL=0;RPP=363.475;RPPR=3132.1;RPR=166;RUN=1;SAF=166;SAP=363.475;SAR=0;SRF=1441;SRP=3132.1;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:575:503,72:503:19831:72:2824:-81.18,0,-1610.15 0/0:545:501,44:501:19649:44:1733:0,-7.86412,-1610.69 0/1:305:275,30:275:10797:30:1151:-12.049,0,-879.248 0/1:182:162,20:162:6332:20:797:-17.2608,0,-514.86 dDocent_Contig_2220 34 . C T 69.2867 . AB=0.116883;ABP=101.178;AC=2;AF=0.25;AN=8;AO=9;CIGAR=1X;DP=178;DPB=178;DPRA=0.762376;EPP=22.5536;EPPR=369.989;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.976331;PAO=0;PQA=0;PQR=0;PRO=0;QA=350;QR=6652;RO=169;RPL=0;RPP=22.5536;RPPR=369.989;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=169;SRP=369.989;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:69:69,0:69:2692:0:0:0,-20.7711,-242.406 0/1:53:48,5:48:1916:5:192:-1.69538,0,-156.688 0/0:32:32,0:32:1275:0:0:0,-9.63296,-115.021 0/1:24:20,4:20:769:4:158:-7.37555,0,-62.3004 dDocent_Contig_2221 18 . C A 1496.34 . AB=0.376712;ABP=22.2858;AC=3;AF=0.375;AN=8;AO=55;CIGAR=1X;DP=216;DPB=216;DPRA=0.695238;EPP=122.441;EPPR=352.617;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2180;QR=6515;RO=161;RPL=0;RPP=122.441;RPPR=352.617;RPR=55;RUN=1;SAF=55;SAP=122.441;SAR=0;SRF=161;SRP=352.617;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:89:49,40:49:1999:40:1579:-115.559,0,-153.296 0/0:70:70,0:70:2823:0:0:0,-21.0721,-254.164 0/1:29:24,5:24:965:5:198:-9.46639,0,-78.4197 0/1:28:18,10:18:728:10:403:-28.2001,0,-57.4158 dDocent_Contig_2222 1 . N G 66.5172 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=4.60517;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=70;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:70:-6.6474,-0.60206,0 dDocent_Contig_2223 79 . G C 184.976 . AB=0.14433;ABP=109.592;AC=1;AF=0.125;AN=8;AO=14;CIGAR=1X;DP=235;DPB=235;DPRA=2.1087;EPP=33.4109;EPPR=482.906;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=535;QR=8373;RO=221;RPL=14;RPP=33.4109;RPPR=482.906;RPR=0;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=221;SRP=482.906;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:97:83,14:83:3126:14:535:-19.2935,0,-252.296 0/0:66:66,0:66:2508:0:0:0,-19.868,-225.915 0/0:40:40,0:40:1512:0:0:0,-12.0412,-136.351 0/0:32:32,0:32:1227:0:0:0,-9.63296,-110.72 dDocent_Contig_2224 13 . A C 4141.5 . AB=0.480836;ABP=3.9258;AC=4;AF=0.5;AN=8;AO=138;CIGAR=1X;DP=287;DPB=287;DPRA=0;EPP=302.673;EPPR=326.56;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5606;QR=5979;RO=149;RPL=0;RPP=302.673;RPPR=326.56;RPR=138;RUN=1;SAF=138;SAP=302.673;SAR=0;SRF=149;SRP=326.56;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:77:47,30:47:1891:30:1216:-86.5317,0,-147.212 0/1:83:39,44:39:1573:44:1786:-135.96,0,-116.815 0/1:92:41,51:41:1634:51:2073:-159.048,0,-119.602 0/1:35:22,13:22:881:13:531:-37.6003,0,-69.0645 dDocent_Contig_2225 43 . G A 1827.57 . AB=0.301653;ABP=85.7057;AC=4;AF=0.5;AN=8;AO=73;CIGAR=1X;DP=242;DPB=242;DPRA=0;EPP=152.961;EPPR=344.394;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2881;QR=6596;RO=169;RPL=1;RPP=152.961;RPPR=344.394;RPR=72;RUN=1;SAF=73;SAP=161.528;SAR=0;SRF=169;SRP=369.989;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:54:39,15:39:1534:15:600:-38.0825,0,-122.056 0/1:81:52,29:52:2053:29:1134:-77.9626,0,-160.584 0/1:68:50,18:50:1915:18:707:-43.4868,0,-152.096 0/1:39:28,11:28:1094:11:440:-28.2153,0,-87.0119 dDocent_Contig_2226 1 . N G 75.0157 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=4.60517;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=79;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:79:-7.49724,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_2227 11 . A G 468.186 . AB=0.36;ABP=11.5225;AC=3;AF=0.375;AN=8;AO=19;CIGAR=1X;DP=86;DPB=86;DPRA=0;EPP=44.2683;EPPR=148.499;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=755;QR=2635;RO=67;RPL=0;RPP=44.2683;RPPR=148.499;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=67;SRP=148.499;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:36:35,1:35:1384:1:40:0,-6.8414,-120.821 0/1:14:9,5:9:351:5:200:-14.1651,0,-27.7298 0/1:22:11,11:11:432:11:439:-33.2427,0,-32.6114 0/1:14:12,2:12:468:2:76:-2.99984,0,-38.2519 dDocent_Contig_2228 22 . T A 1409.94 . AB=0.244813;ABP=139.327;AC=2;AF=0.25;AN=8;AO=63;CIGAR=1X;DP=500;DPB=500;DPRA=0;EPP=139.813;EPPR=951.944;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.997712;PAO=0;PQA=0;PQR=0;PRO=0;QA=2553;QR=17467;RO=437;RPL=0;RPP=139.813;RPPR=951.944;RPR=63;RUN=1;SAF=63;SAP=139.813;SAR=0;SRF=437;SRP=951.944;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:160:157,3:157:6273:3:121:0,-36.8846,-553.017 0/1:178:127,51:127:5128:51:2068:-132.714,0,-407.783 0/0:99:98,1:98:3904:1:41:0,-25.7074,-347.258 0/1:63:55,8:55:2162:8:323:-10.4739,0,-175.792 dDocent_Contig_2229 15 . C A 262.076 . AB=0.180723;ABP=76.5003;AC=3;AF=0.375;AN=8;AO=15;CIGAR=1X;DP=93;DPB=93;DPRA=2.76667;EPP=35.5824;EPPR=172.385;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=596;QR=3146;RO=78;RPL=0;RPP=35.5824;RPPR=172.385;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=78;SRP=172.385;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:37:33,4:33:1330:4:157:-3.36978,0,-108.821 0/1:29:26,3:26:1047:3:116:-2.08564,0,-85.7912 0/1:17:9,8:9:365:8:323:-24.3211,0,-28.0973 0/0:10:10,0:10:404:0:0:0,-3.0103,-36.7201 dDocent_Contig_2230 48 . T G 80.0235 . AB=0.119048;ABP=108.895;AC=2;AF=0.25;AN=8;AO=10;CIGAR=1X;DP=171;DPB=171;DPRA=0.965517;EPP=24.725;EPPR=343.985;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=386;QR=6053;RO=161;RPL=0;RPP=24.725;RPPR=343.985;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=161;SRP=352.617;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:63:63,0:63:2389:0:0:0,-18.9649,-215.208 0/1:34:29,5:29:1110:5:191:-7.32068,0,-89.9615 0/1:50:45,5:45:1674:5:195:-2.87186,0,-135.856 0/0:24:24,0:24:880:0:0:0,-7.22472,-79.5018 dDocent_Contig_2232 1 . N G 111.895 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.29832;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=120;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:120:-11.1873,-0.90309,0 ./.:.:.:.:.:.:.:. dDocent_Contig_2233 20 . C T 309.861 . AB=0.333333;ABP=12.42;AC=3;AF=0.375;AN=8;AO=13;CIGAR=1M1D3M1X;DP=46;DPB=43.8333;DPRA=1.85714;EPP=31.2394;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=57.5385;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=491;QR=1297;RO=33;RPL=0;RPP=31.2394;RPPR=74.6689;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:16:5,11:5:186:11:415:-31.7634,0,-12.2795 0|1:11:10,1:10:399:1:37:-0.386499,0,-32.9584 0|0:7:7,0:7:281:0:0:0,-2.10721,-25.6628 0|1:12:11,1:11:431:1:39:-0.284205,0,-35.5323 dDocent_Contig_2234 136 . A T 1032.11 . AB=0.378641;ABP=16.1867;AC=4;AF=0.5;AN=8;AO=39;CIGAR=1X;DP=103;DPB=103;DPRA=0;EPP=87.6977;EPPR=141.985;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1531;QR=2502;RO=64;RPL=0;RPP=87.6977;RPPR=141.985;RPR=39;RUN=1;SAF=0;SAP=87.6977;SAR=39;SRF=0;SRP=141.985;SRR=64;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:35:20,15:20:792:15:577:-41.721,0,-61.0575 0/1:25:18,7:18:719:7:264:-16.5895,0,-57.5101 0/1:23:14,9:14:523:9:366:-26.3813,0,-40.4695 0/1:20:12,8:12:468:8:324:-23.5086,0,-36.4485 dDocent_Contig_2235 8 . A C 85.1217 . AB=0.178571;ABP=28.1373;AC=2;AF=0.25;AN=8;AO=5;CIGAR=1X;DP=78;DPB=78;DPRA=0.56;EPP=13.8677;EPPR=159.356;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=195;QR=2754;RO=72;RPL=0;RPP=13.8677;RPPR=159.356;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=72;SRP=159.356;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:33:32,0:32:1236:0:0:0,-9.63296,-111.144 0/1:16:12,4:12:461:4:156:-9.60081,0,-37.0239 0/1:12:11,1:11:416:1:39:-0.284205,0,-34.1775 0/0:17:17,0:17:641:0:0:0,-5.11751,-58.0224 dDocent_Contig_2236 16 . T C 738.06 . AB=0.153846;ABP=314.199;AC=3;AF=0.375;AN=8;AO=56;CIGAR=1X;DP=456;DPB=456;DPRA=0;EPP=124.613;EPPR=871.599;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2255;QR=16132;RO=400;RPL=0;RPP=124.613;RPPR=871.599;RPR=56;RUN=1;SAF=56;SAP=124.613;SAR=0;SRF=400;SRP=871.599;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:157:147,10:147:5954:10:406:0,-10.3613,-498.702 0/1:147:118,29:118:4757:29:1179:-62.1326,0,-383.764 0/1:116:105,11:105:4226:11:424:-3.5814,0,-345.36 0/1:36:30,6:30:1195:6:246:-11.683,0,-96.9849 dDocent_Contig_2237 62 . T C 4382.54 . AB=0.542125;ABP=7.21802;AC=4;AF=0.5;AN=8;AO=148;CIGAR=1X;DP=273;DPB=273;DPRA=0;EPP=324.388;EPPR=274.444;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5827;QR=4623;RO=125;RPL=148;RPP=324.388;RPPR=274.444;RPR=0;RUN=1;SAF=148;SAP=324.388;SAR=0;SRF=125;SRP=274.444;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:103:27,76:27:1022:76:2981:-237.377,0,-61.2805 0/1:90:39,51:39:1473:51:2008:-153.813,0,-105.743 0/1:59:45,14:45:1608:14:551:-32.17,0,-127.215 0/1:21:14,7:14:520:7:287:-19.8836,0,-40.8159 dDocent_Contig_2238 7 . T C 166.949 . AB=0.188679;ABP=47.6279;AC=2;AF=0.25;AN=8;AO=16;CIGAR=1X1M1X;DP=157;DPB=157;DPRA=0;EPP=37.7539;EPPR=309.188;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.875;PAIREDR=0.929078;PAO=0;PQA=0;PQR=0;PRO=0;QA=606;QR=5361;RO=141;RPL=0;RPP=37.7539;RPPR=309.188;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=141;SRP=309.188;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:38:33,5:33:1250:5:190:-6.02816,0,-101.355 0|0:53:49,4:49:1865:4:150:0,-2.0889,-154.238 0|0:51:49,2:49:1865:2:77:0,-8.04339,-160.794 0|1:15:10,5:10:381:5:189:-12.8605,0,-30.1294 dDocent_Contig_2239 25 . T C 14857.7 . AB=0.55803;ABP=27.9606;AC=4;AF=0.5;AN=8;AO=476;CIGAR=2M1X;DP=853;DPB=853;DPRA=0;EPP=1036.63;EPPR=597.994;GTI=0;LEN=1;MEANALT=3.75;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=0.978992;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=19095;QR=10895;RO=274;RPL=0;RPP=1036.63;RPPR=597.994;RPR=476;RUN=1;SAF=476;SAP=1036.63;SAR=0;SRF=274;SRP=597.994;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:220:41,1,2,176:41:1636:1,2,176:40,80,7049:-568.34,-577.387,-711.814,-574.092,-705.525,-708.218,0,-131.433,-128.138,-81.7466 0|1:278:102,0,54,119:102:4062:0,54,119:0,2169,4802:-365.123,-395.828,-730.293,-217.1,-551.564,-535.309,0,-334.465,-155.735,-298.642 0|1:233:84,19,10,119:84:3337:19,10,119:745,403,4746:-365.544,-329.568,-598.565,-357.614,-571.068,-629.32,0,-213.46,-241.505,-238.9 0|1:122:47,3,10,62:47:1860:3,10,62:114,398,2498:-191.75,-196.551,-348.717,-173.129,-316.85,-323.187,0,-143.725,-120.302,-134.409 dDocent_Contig_2240 1 . N G 259.815 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=8;CIGAR=1X;DP=8;DPB=8;DPRA=0;EPP=3.0103;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=6.77626e-21;PAIRED=0.5;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=271;QR=0;RO=0;RPL=0;RPP=20.3821;RPPR=0;RPR=8;RUN=1;SAF=4;SAP=3.0103;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:4:0,4:0:0:4:153:-14.1407,-1.20412,0 1/1:1:0,1:0:0:1:34:-3.39891,-0.30103,0 1/1:3:0,3:0:0:3:84:-7.83677,-0.90309,0 ./.:.:.:.:.:.:.:. dDocent_Contig_2242 11 . A T 1620.19 . AB=0.169014;ABP=70.5706;AC=4;AF=0.5;AN=8;AO=12;CIGAR=1X2M1X;DP=139;DPB=139;DPRA=0;EPP=29.068;EPPR=155.013;GTI=0;LEN=1;MEANALT=2;MQM=39.3333;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0.871429;PAO=0;PQA=0;PQR=0;PRO=0;QA=469;QR=2759;RO=70;RPL=0;RPP=29.068;RPPR=155.013;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=70;SRP=155.013;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:59:30,29,0:30:1191:29,0:1146,0:-85.6549,0,-89.7118,-94.6858,-98.4417,-192.732 0|1:43:26,13,4:26:1020:13,4:523,153:-35.3011,0,-80.0029,-31.9223,-72.7036,-114.587 0|1:28:10,10,8:10:388:10,8:408,316:-30.6564,0,-28.8798,-9.68538,-7.90014,-39.1459 0|1:9:4,5,0:4:160:5,0:197,0:-15.3962,0,-12.0745,-16.6003,-13.5797,-29.7831 dDocent_Contig_2243 13 . C A 50.5952 . AB=0.106061;ABP=91.9749;AC=1;AF=0.125;AN=8;AO=17;CIGAR=1X;DP=644;DPB=644;DPRA=0.97546;EPP=39.9253;EPPR=1364.52;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=692;QR=25316;RO=627;RPL=0;RPP=39.9253;RPPR=1364.52;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=627;SRP=1364.52;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:252:242,10:242:9795:10:407:0,-38.869,-843.884 0/0:192:192,0:192:7749:0:0:0,-57.7978,-696.97 0/0:134:134,0:134:5387:0:0:0,-40.338,-484.646 0/1:66:59,7:59:2385:7:285:-6.15643,0,-194.923 dDocent_Contig_2245 36 . C T 43.7554 . AB=0.0952381;ABP=152.428;AC=1;AF=0.125;AN=8;AO=14;CIGAR=1X;DP=421;DPB=421;DPRA=0.527607;EPP=33.4109;EPPR=886.8;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=571;QR=16272;RO=407;RPL=0;RPP=33.4109;RPPR=886.8;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=407;SRP=886.8;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:163:163,0:163:6579:0:0:0,-49.0679,-591.791 0/0:106:104,2:104:4144:2:81:0,-24.2234,-365.225 0/1:105:95,10:95:3779:10:408:-5.47244,0,-308.507 0/0:47:45,2:45:1770:2:82:0,-6.36873,-151.728 dDocent_Contig_2246 170 . A C 13517.4 . AB=0.680851;ABP=56.4193;AC=7;AF=0.875;AN=8;AO=406;CIGAR=1X3M;DP=480;DPB=480;DPRA=0;EPP=884.628;EPPR=124.613;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=16084;QR=2184;RO=56;RPL=406;RPP=884.628;RPPR=124.613;RPR=0;RUN=1;SAF=0;SAP=884.628;SAR=406;SRF=0;SRP=124.613;SRR=56;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:188:44,15,128:44:1721:15,128:602,5020:-399.527,-363.168,-500.146,0,-91.8926,-102.968 1|1:135:7,0,127:7:267:0,127:0,5062:-431.062,-433.169,-455.071,-16.3444,-38.2308,0 1|1:89:5,0,84:5:196:0,84:0,3329:-281.65,-283.156,-299.274,-8.77645,-25.2865,0 1|1:68:0,0,67:0:0:0,67:0,2673:-240.297,-240.297,-240.297,-20.169,-20.169,0 dDocent_Contig_2247 98 . N A 89.3574 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0.333333;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=89;QR=0;RO=0;RPL=3;RPP=9.52472;RPPR=0;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:54:-5.12954,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:1:0,1:0:0:1:35:-3.49863,-0.30103,0 dDocent_Contig_2248 108 . T G 1815.97 . AB=0.692308;ABP=19.7139;AC=6;AF=0.75;AN=8;AO=66;CIGAR=1X;DP=82;DPB=82;DPRA=0;EPP=146.327;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2202;QR=508;RO=16;RPL=0;RPP=146.327;RPPR=37.7539;RPR=66;RUN=1;SAF=0;SAP=146.327;SAR=66;SRF=0;SRP=37.7539;SRR=16;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:16:0,16:0:0:16:554:-50.1877,-4.81648,0 0/1:34:9,25:9:299:25:831:-64.8604,0,-16.9989 0/1:18:7,11:7:209:11:358:-27.1171,0,-13.6851 1/1:14:0,14:0:0:14:459:-41.6256,-4.21442,0 dDocent_Contig_2249 12 . G C 110.245 . AB=0.227273;ABP=17.2236;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=131;DPB=131;DPRA=1.62;EPP=16.0391;EPPR=274.444;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.56;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.992;PAO=0;PQA=0;PQR=0;PRO=0;QA=241;QR=4988;RO=125;RPL=0;RPP=16.0391;RPPR=274.444;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=125;SRP=274.444;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:59:58,1:58:2313:1:37:0,-14.0629,-204.637 0/0:37:37,0:37:1481:0:0:0,-11.1381,-133.533 0/1:22:17,5:17:686:5:204:-12.1214,0,-52.188 0/0:13:13,0:13:508:0:0:0,-3.91339,-46.0586 dDocent_Contig_2250 19 . T G 7710.87 . AB=0.192521;ABP=1628.15;AC=4;AF=0.5;AN=8;AO=381;CIGAR=1X;DP=1979;DPB=1979;DPRA=0;EPP=804.489;EPPR=3224.74;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=59.9871;NS=4;NUMALT=1;ODDS=1.11022e-16;PAIRED=0.971129;PAIREDR=0.946348;PAO=0;PQA=0;PQR=0;PRO=0;QA=15089;QR=61663;RO=1547;RPL=0;RPP=830.341;RPPR=3362.28;RPR=381;RUN=1;SAF=378;SAP=804.489;SAR=3;SRF=1531;SRP=3224.74;SRR=16;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:722:545,150:545:21722:150:5922:-323.155,0,-1743.5 0/1:636:521,105:521:20760:105:4191:-188.306,0,-1677.76 0/1:438:342,88:342:13636:88:3464:-181.971,0,-1096.36 0/1:183:139,38:139:5545:38:1512:-82.6449,0,-445.193 dDocent_Contig_2251 154 . G T 141.687 . AB=0.225806;ABP=23.254;AC=2;AF=0.25;AN=8;AO=7;CIGAR=1X;DP=51;DPB=51;DPRA=1.55;EPP=18.2106;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=277;QR=1767;RO=44;RPL=0;RPP=18.2106;RPPR=98.5551;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=98.5551;SRR=44;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:11,4:11:447:4:158:-10.0839,0,-36.0704 0/0:14:14,0:14:563:0:0:0,-4.21442,-51.0135 0/1:16:13,3:13:514:3:119:-6.27853,0,-41.7879 0/0:6:6,0:6:243:0:0:0,-1.80618,-22.248 dDocent_Contig_2252 96 . A G 570.128 . AB=0.346667;ABP=18.3264;AC=3;AF=0.375;AN=8;AO=26;CIGAR=1X;DP=88;DPB=88;DPRA=1.92308;EPP=59.4686;EPPR=137.642;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=913;QR=2169;RO=62;RPL=26;RPP=59.4686;RPPR=137.642;RPR=0;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:37:21,16:21:717:16:573:-40.766,0,-53.7059 0/1:25:18,7:18:641:7:232:-13.6768,0,-50.4941 0/1:13:10,3:10:358:3:108:-6.16178,0,-28.6496 0/0:13:13,0:13:453:0:0:0,-3.91339,-41.1015 dDocent_Contig_2254 10 . T G 52.113 . AB=0.0932642;ABP=280.34;AC=1;AF=0.125;AN=8;AO=32;CIGAR=1X;DP=511;DPB=511;DPRA=4.67647;EPP=72.4974;EPPR=1030.12;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=59.9789;NS=4;NUMALT=1;ODDS=2.77556e-17;PAIRED=1;PAIREDR=0.978858;PAO=0;PQA=0;PQR=0;PRO=0;QA=1232;QR=18908;RO=473;RPL=0;RPP=72.4974;RPPR=1030.12;RPR=32;RUN=1;SAF=32;SAP=72.4974;SAR=0;SRF=473;SRP=1030.12;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:193:172,18:172:6907:18:703:-6.00715,0,-563.689 0/0:190:181,6:181:7219:6:244:0,-34.3533,-627.011 0/0:94:86,8:86:3424:8:285:0,-2.31271,-282.207 0/0:34:34,0:34:1358:0:0:0,-10.235,-122.474 dDocent_Contig_2255 42 . A T 48.2191 . AB=0.119048;ABP=55.9529;AC=1;AF=0.125;AN=8;AO=20;CIGAR=1X;DP=372;DPB=372;DPRA=0;EPP=46.4397;EPPR=767.369;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.8;PAIREDR=0.974432;PAO=0;PQA=0;PQR=0;PRO=0;QA=793;QR=14059;RO=352;RPL=0;RPP=46.4397;RPPR=767.369;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=352;SRP=767.369;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:109:103,6:103:4112:6:226:0,-12.1132,-349.353 0/0:133:127,6:127:5060:6:243:0,-17.789,-433.039 0/0:88:85,3:85:3400:3:122:0,-15.1181,-294.675 0/1:42:37,5:37:1487:5:202:-5.91882,0,-121.431 dDocent_Contig_2256 29 . C T 2529.05 . AB=0.29683;ABP=127.423;AC=4;AF=0.5;AN=8;AO=103;CIGAR=1X2M7D1M;DP=347;DPB=281.455;DPRA=0;EPP=226.672;EPPR=526.335;GTI=0;LEN=1;MEANALT=1.75;MQM=59.9515;MQMR=60;NS=4;NUMALT=1;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4010;QR=9425;RO=241;RPL=0;RPP=226.672;RPPR=526.335;RPR=103;RUN=1;SAF=103;SAP=226.672;SAR=0;SRF=241;SRP=526.335;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:102:83,19:83:3264:19:749:-37.0333,0,-263.157 0|1:116:69,45:69:2713:45:1755:-123.58,0,-209.712 0|1:89:65,23:65:2506:23:891:-53.634,0,-198.844 0|1:40:24,16:24:942:16:615:-43.6474,0,-73.0461 dDocent_Contig_2257 55 . T A 3299.76 . AB=0.633028;ABP=19.7645;AC=5;AF=0.625;AN=8;AO=109;CIGAR=1X;DP=152;DPB=152;DPRA=0;EPP=239.701;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4182;QR=1672;RO=43;RPL=109;RPP=239.701;RPPR=96.3836;RPR=0;RUN=1;SAF=109;SAP=239.701;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:55:24,31:24:940:31:1162:-88.3047,0,-68.3476 1/1:43:3,40:3:120:40:1554:-128.927,-1.75639,0 0/1:38:13,25:13:492:25:957:-74.9965,0,-33.1793 0/1:16:3,13:3:120:13:509:-41.3397,0,-6.37121 dDocent_Contig_2258 40 . T A 478.236 . AB=0.192593;ABP=113.82;AC=3;AF=0.375;AN=8;AO=27;CIGAR=1X;DP=177;DPB=177;DPRA=0;EPP=61.6401;EPPR=326.56;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1053;QR=5337;RO=149;RPL=0;RPP=61.6401;RPPR=326.56;RPR=27;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=149;SRP=326.56;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:32:25,7:25:895:7:285:-16.3914,0,-71.2308 0/1:50:37,12:37:1332:12:470:-27.5051,0,-105.033 0/1:53:46,7:46:1607:7:257:-7.51876,0,-128.938 0/0:42:41,1:41:1503:1:41:0,-8.54869,-131.453 dDocent_Contig_2260 8 . A T 114.081 . AB=0.170732;ABP=41.6201;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=131;DPB=131;DPRA=1.36667;EPP=18.2106;EPPR=272.273;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=272;QR=4734;RO=124;RPL=0;RPP=18.2106;RPPR=272.273;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=124;SRP=272.273;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:25:25,0:25:946:0:0:0,-7.52575,-85.4546 0/1:41:34,7:34:1302:7:272:-12.505,0,-105.127 0/0:37:37,0:37:1427:0:0:0,-11.1381,-128.71 0/0:28:28,0:28:1059:0:0:0,-8.42884,-95.617 dDocent_Contig_2261 7 . A T 5527.79 . AB=0.624585;ABP=43.5901;AC=4;AF=0.5;AN=8;AO=188;CIGAR=1X;DP=301;DPB=301;DPRA=0;EPP=411.247;EPPR=248.387;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.982301;PAO=0;PQA=0;PQR=0;PRO=0;QA=7193;QR=4342;RO=113;RPL=0;RPP=411.247;RPPR=248.387;RPR=188;RUN=1;SAF=188;SAP=411.247;SAR=0;SRF=113;SRP=248.387;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:123:40,83:40:1537:83:3169:-248.337,0,-101.576 0/1:83:30,53:30:1150:53:2046:-159.388,0,-78.8131 0/1:58:34,24:34:1306:24:903:-64.1247,0,-100.369 0/1:37:9,28:9:349:28:1075:-85.9186,0,-20.6326 dDocent_Contig_2262 15 . T C 1064.83 . AB=0.4;ABP=11.2619;AC=3;AF=0.375;AN=8;AO=38;CIGAR=1X;DP=122;DPB=122;DPRA=1.17284;EPP=85.5263;EPPR=185.414;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1529;QR=3350;RO=84;RPL=0;RPP=85.5263;RPPR=185.414;RPR=38;RUN=1;SAF=38;SAP=85.5263;SAR=0;SRF=84;SRP=185.414;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:28,3:28:1132:3:123:-2.13286,0,-92.8284 0/1:42:15,27:15:594:27:1083:-85.107,0,-41.1555 0/0:27:27,0:27:1068:0:0:0,-8.12781,-96.4055 0/1:22:14,8:14:556:8:323:-22.8157,0,-43.7557 dDocent_Contig_2263 22 . C A 4477.83 . AB=0.365243;ABP=324.308;AC=4;AF=0.5;AN=8;AO=744;CIGAR=1X;DP=2037;DPB=2037;DPRA=0;EPP=1618.59;EPPR=2685.6;GTI=0;LEN=1;MEANALT=2;MQM=15.9005;MQMR=20.8765;NS=4;NUMALT=1;ODDS=1.11022e-16;PAIRED=0;PAIREDR=0.102424;PAO=0;PQA=0;PQR=0;PRO=0;QA=29532;QR=51262;RO=1279;RPL=0;RPP=1618.59;RPPR=2780.32;RPR=744;RUN=1;SAF=744;SAP=1618.59;SAR=0;SRF=1268;SRP=2685.6;SRR=11;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:635:422,211:422:16976:211:8354:-120.151,0,-525.051 0/1:655:401,254:401:16084:254:10103:-166.775,0,-520.402 0/1:470:284,175:284:11295:175:6927:-100.769,0,-333.613 0/1:277:172,104:172:6907:104:4148:-65.0767,0,-186.838 dDocent_Contig_2264 19 . T C 7285.66 . AB=0.848485;ABP=977.672;AC=6;AF=0.75;AN=8;AO=1300;CIGAR=2M1X;DP=1497;DPB=1589.33;DPRA=0;EPP=2817.25;EPPR=111.584;GTI=0;LEN=1;MEANALT=3.5;MQM=6.63231;MQMR=22.66;NS=4;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=52245;QR=1996;RO=50;RPL=0;RPP=2825.92;RPPR=111.584;RPR=1300;RUN=1;SAF=1299;SAP=2817.25;SAR=1;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:368:24,11,332:24:947:11,332:438,13378:-155.693,-129.7,-168.519,-57.8996,-66.6889,0 0|1:523:11,52,451:11:441:52,451:2006,18119:-265.999,-116.734,-120.458,-133.313,0,-16.9074 0|1:401:15,47,333:15:608:47,333:1848,13390:-207.908,-71.7548,-82.62,-115.771,0,-40.5089 1|1:205:0,20,184:0:0:20,184:723,7358:-101.159,-46.6679,-40.6473,-55.3895,-0.681289,0 dDocent_Contig_2265 11 . C A 572.469 . AB=0.10119;ABP=467.188;AC=2;AF=0.25;AN=8;AO=39;CIGAR=1X1M;DP=488;DPB=488;DPRA=0;EPP=87.6977;EPPR=902;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=0.574879;PAO=0;PQA=0;PQR=0;PRO=0;QA=1573;QR=16518;RO=414;RPL=0;RPP=87.6977;RPPR=902;RPR=39;RUN=1;SAF=39;SAP=87.6977;SAR=0;SRF=414;SRP=902;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:134:105,10,2,17:105:4212:10,2,17:405,82,689:-25.2087,-23.4219,-367.441,-50.0484,-363.683,-396.477,0,-313.634,-340.261,-341.912 0|0:152:144,0,3,5:144:5719:0,3,5:0,123,200:0,-43.3483,-514.125,-33.1924,-503.972,-503.069,-26.8797,-497.65,-487.497,-496.145 0|1:153:133,0,5,15:133:5293:0,5,15:0,202,602:-9.56411,-49.6011,-485.393,-32.9472,-468.739,-467.234,0,-435.789,-419.136,-431.274 0|0:49:32,4,11,2:32:1294:4,11,2:164,434,82:-26.0659,-22.1595,-127.648,0,-93.1456,-103.371,-28.9294,-122.083,-99.9141,-135.018 dDocent_Contig_2266 15 . A C 138.633 . AB=0.25;ABP=16.0391;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=54;DPB=54;DPRA=2.4;EPP=16.0391;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=239;QR=1916;RO=48;RPL=0;RPP=16.0391;RPPR=107.241;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:18,6:18:721:6:239:-14.6592,0,-57.9894 0/0:13:13,0:13:515:0:0:0,-3.91339,-46.6942 0/0:7:7,0:7:285:0:0:0,-2.10721,-26.0244 0/0:10:10,0:10:395:0:0:0,-3.0103,-35.9045 dDocent_Contig_2268 1 . N G 76.9006 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=4.60517;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:81:-7.68573,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_2269 12 . A C 171.408 . AB=0.161765;ABP=70.5814;AC=2;AF=0.25;AN=8;AO=11;CIGAR=1X;DP=121;DPB=121;DPRA=1.28302;EPP=26.8965;EPPR=241.872;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.981818;PAO=0;PQA=0;PQR=0;PRO=0;QA=434;QR=4344;RO=110;RPL=0;RPP=26.8965;RPPR=241.872;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=110;SRP=241.872;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:41:41,0:41:1596:0:0:0,-12.3422,-143.878 0/1:38:33,5:33:1318:5:190:-6.02672,0,-107.438 0/1:30:24,6:24:960:6:244:-13.3079,0,-77.6715 0/0:12:12,0:12:470:0:0:0,-3.61236,-42.643 dDocent_Contig_2270 41 . A C 4450.16 . AB=0.626168;ABP=17.8047;AC=5;AF=0.625;AN=8;AO=144;CIGAR=1X;DP=191;DPB=191;DPRA=0;EPP=298.572;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=59.8611;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.958333;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5591;QR=1774;RO=47;RPL=0;RPP=315.702;RPPR=105.07;RPR=144;RUN=1;SAF=142;SAP=298.572;SAR=2;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:61:25,36:25:940:36:1377:-105.792,0,-66.5283 1/1:84:7,77:7:267:77:2986:-244.459,-0.898065,0 0/1:24:13,11:13:493:11:445:-33.1811,0,-37.4845 0/1:22:2,20:2:74:20:783:-64.168,0,-0.4022 dDocent_Contig_2271 26 . T C 11481.6 . AB=0.896552;ABP=399.117;AC=6;AF=0.75;AN=8;AO=356;CIGAR=1X;DP=392;DPB=392;DPRA=0;EPP=776.054;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=13992;QR=1341;RO=36;RPL=0;RPP=776.054;RPPR=81.1833;RPR=356;RUN=1;SAF=356;SAP=776.054;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:177:17,160:17:622:160:6206:-505.041,0,-3.02483 0/1:113:13,100:13:485:100:3988:-324.893,0,-9.97516 1/1:58:3,55:3:117:55:2160:-183.675,-6.54953,0 1/1:44:3,41:3:117:41:1638:-136.739,-2.33511,0 dDocent_Contig_2272 7 . T C 156.373 . AB=0.259259;ABP=30.1939;AC=1;AF=0.125;AN=8;AO=15;CIGAR=1X1M1X;DP=119;DPB=119;DPRA=1.2037;EPP=35.5824;EPPR=228.843;GTI=0;LEN=1;MEANALT=1;MQM=25.5333;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=573;QR=3984;RO=104;RPL=0;RPP=35.5824;RPPR=228.843;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=104;SRP=228.843;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:54:40,14:40:1532:14:535:-16.433,0,-121.9 0|0:44:44,0:44:1682:0:0:0,-13.2453,-151.645 0|0:11:10,1:10:384:1:38:0,-1.4167,-33.0217 0|0:10:10,0:10:386:0:0:0,-3.0103,-35.0972 dDocent_Contig_2273 9 . A C 63.2966 . AB=0.181818;ABP=22.3561;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=198;DPB=198;DPRA=0.935897;EPP=20.3821;EPPR=413.419;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=307;QR=7130;RO=189;RPL=0;RPP=20.3821;RPPR=413.419;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=189;SRP=413.419;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:52:52,0:52:1963:0:0:0,-15.6536,-176.92 0/0:81:80,1:80:3023:1:38:0,-20.5862,-268.454 0/0:43:39,3:39:1463:3:117:0,-2.12254,-121.042 0/1:22:18,4:18:681:4:152:-7.42654,0,-54.9997 dDocent_Contig_2274 23 . G A 9725.22 . AB=0.665094;ABP=53.2;AC=6;AF=0.75;AN=8;AO=303;CIGAR=1X;DP=397;DPB=397;DPRA=0;EPP=652.309;EPPR=173.864;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=43.5532;NS=4;NUMALT=1;ODDS=0;PAIRED=0.970297;PAIREDR=0.0319149;PAO=0;PQA=0;PQR=0;PRO=0;QA=11943;QR=3649;RO=94;RPL=0;RPP=660.966;RPPR=207.129;RPR=303;RUN=1;SAF=302;SAP=652.309;SAR=1;SRF=90;SRP=173.864;SRR=4;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:94:11,83:11:440:83:3272:-282.832,-16.5785,0 0/1:115:47,68:47:1836:68:2685:-207.15,0,-109.206 0/1:97:24,73:24:912:73:2866:-228.85,0,-43.8647 1/1:91:12,79:12:461:79:3120:-255.883,-2.39572,0 dDocent_Contig_2275 98 . N A 6701.52 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=220;CIGAR=1X;DP=220;DPB=220;DPRA=0;EPP=480.734;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=7427;QR=0;RO=0;RPL=220;RPP=480.734;RPPR=0;RPR=0;RUN=1;SAF=220;SAP=480.734;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:64:0,64:0:0:64:2162:-194.851,-19.2659,0 1/1:52:0,52:0:0:52:1742:-157.06,-15.6536,0 1/1:64:0,64:0:0:64:2144:-193.23,-19.2659,0 1/1:40:0,40:0:0:40:1379:-124.409,-12.0412,0 dDocent_Contig_2276 9 . A T 334.419 . AB=0.148148;ABP=177.211;AC=2;AF=0.25;AN=8;AO=24;CIGAR=1X;DP=257;DPB=257;DPRA=1.70526;EPP=55.1256;EPPR=508.963;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=930;QR=8921;RO=233;RPL=0;RPP=55.1256;RPPR=508.963;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=233;SRP=508.963;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:73:73,0:73:2784:0:0:0,-21.9752,-250.743 0/1:129:110,19:110:4219:19:737:-27.8284,0,-340.953 0/1:33:28,5:28:1078:5:193:-7.80737,0,-87.3911 0/0:22:22,0:22:840:0:0:0,-6.62266,-75.9226 dDocent_Contig_2277 151 . A G 130.461 . AB=0.26087;ABP=14.4341;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=83;DPB=83;DPRA=1.15;EPP=16.0391;EPPR=170.214;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=230;QR=2928;RO=77;RPL=0;RPP=16.0391;RPPR=170.214;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=170.214;SRR=77;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:28:28,0:28:1076:0:0:0,-8.42884,-97.1451 0/1:23:17,6:17:651:6:230:-14.143,0,-52.0019 0/0:14:14,0:14:546:0:0:0,-4.21442,-49.4857 0/0:18:18,0:18:655:0:0:0,-5.41854,-59.2738 dDocent_Contig_2278 15 . A G 6336.82 . AB=0.531609;ABP=6.03039;AC=5;AF=0.625;AN=8;AO=185;CIGAR=1X1M;DP=348;DPB=348;DPRA=0;EPP=404.733;EPPR=189.757;GTI=0;LEN=1;MEANALT=2.25;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7387;QR=3396;RO=86;RPL=0;RPP=404.733;RPPR=189.757;RPR=185;RUN=1;SAF=185;SAP=404.733;SAR=0;SRF=86;SRP=189.757;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:124:32,27,65:32:1251:27,65:1075,2597:-204.264,-125.385,-220.089,0,-14.3147,-83.264 1|1:155:28,45,82:28:1112:45,82:1794,3265:-316.586,-177.285,-255.275,-56.1946,0,-123.047 0|1:44:17,2,25:17:675:2,25:79,1010:-78.156,-76.7733,-131.735,0,-49.0674,-48.0424 0|1:25:9,2,13:9:358:2,13:82,515:-39.6646,-35.6041,-64.4791,0,-22.6977,-25.5543 dDocent_Contig_2279 47 . T C 333.047 . AB=0.169643;ABP=109.18;AC=3;AF=0.375;AN=8;AO=23;CIGAR=1X;DP=177;DPB=177;DPRA=0;EPP=52.9542;EPPR=337.417;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=934;QR=6134;RO=154;RPL=0;RPP=52.9542;RPPR=337.417;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=154;SRP=337.417;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:65:61,4:61:2437:4:162:0,-4.59999,-204.506 0/1:31:27,4:27:1084:4:162:-5.63503,0,-88.5121 0/1:47:41,6:41:1616:6:246:-8.37171,0,-131.526 0/1:34:25,9:25:997:9:364:-22.8897,0,-79.7915 dDocent_Contig_2280 13 . G A 176.088 . AB=0.125984;ABP=157.322;AC=2;AF=0.25;AN=8;AO=22;CIGAR=1X;DP=252;DPB=252;DPRA=0;EPP=50.7827;EPPR=502.449;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.986957;PAO=0;PQA=0;PQR=0;PRO=0;QA=868;QR=9041;RO=230;RPL=0;RPP=50.7827;RPPR=502.449;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=230;SRP=502.449;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:84:79,5:79:3112:5:190:0,-7.82271,-262.708 0/1:81:74,7:74:2924:7:280:-1.18776,0,-238.881 0/0:41:40,1:40:1596:1:41:0,-8.24766,-139.787 0/1:46:37,9:37:1409:9:357:-18.6435,0,-113.214 dDocent_Contig_2281 21 . C T 164.267 . AB=0.142857;ABP=26.2761;AC=1;AF=0.125;AN=8;AO=3;CIGAR=5M1X1M;DP=199;DPB=194.429;DPRA=0.362069;EPP=9.52472;EPPR=393.875;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=123;QR=7074;RO=180;RPL=0;RPP=9.52472;RPPR=393.875;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=180;SRP=393.875;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:65:63,2,0:63:2502:2,0:81,0:0,-11.8812,-217.645,-18.9649,-218.247,-224.926 0|0:51:48,3,0:48:1889:3,0:120,0:0,-4.16463,-159.039,-14.4494,-159.942,-169.828 0|0:62:53,9,0:53:2060:9,0:351,0:-13.2817,0,-166.946,-29.2363,-169.655,-198.502 0|1:21:16,2,3:16:623:2,3:81,123:-5.33873,-3.47802,-54.0575,0,-44.5041,-50.2819 dDocent_Contig_2282 183 . T C 467.645 . AB=0.162791;ABP=172.89;AC=1;AF=0.125;AN=8;AO=28;CIGAR=1X;DP=542;DPB=542;DPRA=1.39459;EPP=63.8115;EPPR=1119.15;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1104;QR=20302;RO=514;RPL=28;RPP=63.8115;RPPR=1119.15;RPR=0;RUN=1;SAF=0;SAP=63.8115;SAR=28;SRF=0;SRP=1119.15;SRR=514;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:198:198,0:198:7794:0:0:0,-59.6039,-701.068 0/1:172:144,28:144:5681:28:1104:-47.8614,0,-459.326 0/0:87:87,0:87:3447:0:0:0,-26.1896,-310.269 0/0:85:85,0:85:3380:0:0:0,-25.5875,-304.25 dDocent_Contig_2283 118 . C T 1778.96 . AB=0.507246;ABP=3.07324;AC=4;AF=0.5;AN=8;AO=70;CIGAR=1X;DP=138;DPB=138;DPRA=0;EPP=155.013;EPPR=150.67;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2479;QR=2270;RO=68;RPL=0;RPP=155.013;RPPR=150.67;RPR=70;RUN=1;SAF=0;SAP=155.013;SAR=70;SRF=0;SRP=150.67;SRR=68;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:14,22:14:479:22:785:-60.1374,0,-32.5998 0/1:64:39,25:39:1281:25:884:-60.6126,0,-96.312 0/1:29:11,18:11:380:18:632:-48.4767,0,-25.803 0/1:9:4,5:4:130:5:178:-13.6594,0,-9.3118 dDocent_Contig_2284 14 . A G 23381.3 . AB=0.656151;ABP=204.423;AC=8;AF=1;AN=8;AO=624;CIGAR=1M1X4M;DP=951;DPB=951;DPRA=0;EPP=1358.01;EPPR=70.3259;GTI=0;LEN=1;MEANALT=9.25;MQM=53.2244;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.932692;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=24398;QR=1226;RO=31;RPL=0;RPP=1358.01;RPPR=70.3259;RPR=624;RUN=1;SAF=624;SAP=1358.01;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:429:13,99,257:13:514:99,257:3828,10105:-1014.39,-776.016,-788.513,-199.972,0,-164.911 1|1:307:5,56,222:5:197:56,222:2147,8627:-816.677,-676.689,-676.039,-125.277,0,-74.6603 1|1:145:8,30,98:8:316:30,98:1181,3829:-347.045,-279.854,-296.827,-43.5526,0,-40.0702 1|1:70:5,15,47:5:199:15,47:587,1837:-165.013,-130.82,-142.692,-19.2514,0,-21.5076 dDocent_Contig_2285 119 . T A 38.8942 . AB=0.103448;ABP=280.285;AC=2;AF=0.25;AN=8;AO=25;CIGAR=1X;DP=267;DPB=267;DPRA=0;EPP=13.5202;EPPR=396.587;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.908714;PAO=0;PQA=0;PQR=0;PRO=0;QA=879;QR=8309;RO=241;RPL=0;RPP=57.2971;RPPR=526.335;RPR=25;RUN=1;SAF=18;SAP=13.5202;SAR=7;SRF=16;SRP=396.587;SRR=225;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:144:130,14:130:4458:14:519:-3.7018,0,-358.041 0/1:59:51,7:51:1769:7:218:-2.36941,0,-141.957 0/0:41:38,3:38:1322:3:103:0,-2.73342,-109.667 0/0:23:22,1:22:760:1:39:0,-3.02713,-64.8216 dDocent_Contig_2286 12 . G A 66.8694 . AB=0.272727;ABP=7.94546;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=56;DPB=56;DPRA=0.733333;EPP=9.52472;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=119;QR=2030;RO=53;RPL=0;RPP=9.52472;RPPR=118.098;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:18:18,0:18:686:0:0:0,-5.41854,-62.0712 0/0:14:14,0:14:530:0:0:0,-4.21442,-48.039 0/0:13:13,0:13:508:0:0:0,-3.91339,-46.0687 0/1:11:8,3:8:306:3:119:-7.78385,0,-24.5876 dDocent_Contig_2287 73 . T C 61.062 . AB=0.12;ABP=128.435;AC=2;AF=0.25;AN=8;AO=14;CIGAR=1X;DP=152;DPB=152;DPRA=3.5641;EPP=33.4109;EPPR=302.673;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.971014;PAO=0;PQA=0;PQR=0;PRO=0;QA=482;QR=4512;RO=138;RPL=14;RPP=33.4109;RPPR=302.673;RPR=0;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=138;SRP=302.673;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:28,3:28:900:3:105:-0.464232,0,-71.9653 0/0:39:37,2:37:1181:2:70:0,-5.09277,-99.9323 0/1:69:60,9:60:2012:9:307:-7.19064,0,-160.586 0/0:13:13,0:13:419:0:0:0,-3.91339,-38.0201 dDocent_Contig_2288 94 . A C 99.8441 . AB=0.294118;ABP=9.26925;AC=1;AF=0.125;AN=8;AO=5;CIGAR=3X3M1X;DP=79;DPB=79.2857;DPRA=0.822581;EPP=13.8677;EPPR=163.699;GTI=0;LEN=1;MEANALT=1;MQM=57.2;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=0;PAIREDR=0.945946;PAO=1;PQA=7;PQR=34;PRO=1;QA=173;QR=2619;RO=74;RPL=0;RPP=13.8677;RPPR=163.699;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=163.699;SRR=74;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:17:12,5:12:427:5:173:-10.7803,0,-33.6511 0|0:15:15,0:15:528:0:0:0,-4.51545,-47.7642 0|0:22:22,0:22:779:0:0:0,-6.62266,-70.4336 0|0:25:25,0:25:885:0:0:0,-7.52575,-79.6286 dDocent_Contig_2289 8 . T A 55132.3 . AB=0;ABP=0;AC=0;AF=0;AN=8;AO=66;CIGAR=1X2M1D5M;DP=1979;DPB=1969.22;DPRA=0;EPP=146.327;EPPR=148.499;GTI=0;LEN=1;MEANALT=10;MQM=25.1212;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0.985075;PAO=0;PQA=0;PQR=0;PRO=0;QA=1654;QR=2595;RO=67;RPL=0;RPP=146.327;RPPR=148.499;RPR=66;RUN=1;SAF=66;SAP=146.327;SAR=0;SRF=67;SRP=148.499;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:661:19,2,576:19:736:2,576:50,21920:-1904.69,-1907.05,-1966.91,-112.927,-170.04,0 0|0:539:21,16,444:21:819:16,444:420,17018:-1456.75,-1434.42,-1496.93,-66.3246,-105.023,0 0|0:519:17,36,430:17:657:36,430:897,16425:-1418.02,-1362.74,-1405.87,-75.4657,-69.1054,0 0|0:260:10,12,223:10:383:12,223:287,8535:-733.171,-717.21,-745.028,-35.6641,-48.1875,0 dDocent_Contig_2290 7 . C T 4685.98 . AB=0.337568;ABP=129.283;AC=4;AF=0.5;AN=8;AO=186;CIGAR=1X;DP=551;DPB=551;DPRA=0;EPP=406.904;EPPR=793.426;GTI=0;LEN=1;MEANALT=1.25;MQM=59.9247;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7093;QR=14004;RO=364;RPL=0;RPP=406.904;RPPR=793.426;RPR=186;RUN=1;SAF=186;SAP=406.904;SAR=0;SRF=364;SRP=793.426;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:110:90,20:90:3480:20:763:-35.8777,0,-280.212 0/1:139:92,47:92:3537:47:1809:-121.217,0,-276.603 0/1:166:109,57:109:4182:57:2167:-145.282,0,-326.491 0/1:136:73,62:73:2805:62:2354:-171.212,0,-211.767 dDocent_Contig_2291 82 . A C 3527.07 . AB=0.503597;ABP=3.04154;AC=4;AF=0.5;AN=8;AO=140;CIGAR=1X9M;DP=278;DPB=278;DPRA=0;EPP=307.016;EPPR=270.101;GTI=0;LEN=1;MEANALT=3.25;MQM=60;MQMR=60;NS=4;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4822;QR=4157;RO=123;RPL=140;RPP=307.016;RPPR=270.101;RPR=0;RUN=1;SAF=140;SAP=307.016;SAR=0;SRF=123;SRP=270.101;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:135:73,0,0,56,0:73:2460:0,0,56,0:0,0,1942,0:-135.907,-157.882,-357.23,-157.882,-357.23,-357.23,0,-199.368,-199.368,-182.511,-157.882,-357.23,-357.23,-199.368,-357.23 0|1:91:34,0,0,56,0:34:1149:0,0,56,0:0,0,1932,0:-146.768,-157.003,-250.142,-157.003,-250.142,-250.142,0,-93.1779,-93.1779,-76.3202,-157.003,-250.142,-250.142,-93.1779,-250.142 0|1:38:15,2,2,17,0:15:514:2,2,17,0:70,69,578,0:-42.3997,-41.2177,-82.3505,-41.3079,-77.3462,-82.4406,0,-36.0625,-36.1528,-36.6426,-46.9151,-82.9526,-83.0426,-41.7601,-88.6489 1|0:14:1,0,0,11,2:1:34:0,0,11,2:0,0,370,70:-32.6112,-32.9122,-35.6703,-32.9122,-35.6703,-35.6703,-2.94745,-5.70212,-5.70212,-2.39079,-27.2147,-29.9729,-29.9729,0,-29.3709 dDocent_Contig_2292 31 . C G 42.7894 . AB=0.15;ABP=24.2907;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=118;DPB=118;DPRA=0.612245;EPP=9.52472;EPPR=250.558;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=119;QR=4505;RO=114;RPL=0;RPP=9.52472;RPPR=250.558;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=114;SRP=250.558;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:17,3:17:684:3:119:-5.07479,0,-55.8698 0/0:47:46,0:46:1792:0:0:0,-13.8474,-161.108 0/0:35:35,0:35:1396:0:0:0,-10.536,-125.897 0/0:16:16,0:16:633:0:0:0,-4.81648,-57.2993 dDocent_Contig_2293 16 . G A 1365.05 . AB=0.533333;ABP=3.73412;AC=5;AF=0.625;AN=8;AO=46;CIGAR=1X;DP=81;DPB=81;DPRA=0;EPP=102.898;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.956522;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1792;QR=1302;RO=35;RPL=0;RPP=102.898;RPPR=79.0118;RPR=46;RUN=1;SAF=46;SAP=102.898;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:43:23,20:23:852:20:788:-58.2979,0,-64.0495 0/1:11:3,8:3:116:8:298:-23.861,0,-7.50607 0/1:21:9,12:9:334:12:471:-36.4168,0,-24.0857 1/1:6:0,6:0:0:6:235:-21.5214,-1.80618,0 dDocent_Contig_2294 15 . T C 116.592 . AB=0.148148;ABP=61.0771;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=117;DPB=117;DPRA=2.57143;EPP=20.3821;EPPR=239.701;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=315;QR=4345;RO=109;RPL=0;RPP=20.3821;RPPR=239.701;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=109;SRP=239.701;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:54:46,8:46:1839:8:315:-12.4551,0,-149.456 0/0:12:12,0:12:490:0:0:0,-3.61236,-44.4511 0/0:35:35,0:35:1408:0:0:0,-10.536,-126.974 0/0:16:16,0:16:608:0:0:0,-4.81648,-55.0493 dDocent_Contig_2296 9 . A G 923.608 . AB=0.238889;ABP=109.605;AC=3;AF=0.375;AN=8;AO=48;CIGAR=1X;DP=249;DPB=249;DPRA=0;EPP=107.241;EPPR=439.476;GTI=0;LEN=1;MEANALT=1;MQM=58.3333;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.916667;PAIREDR=0.995025;PAO=0;PQA=0;PQR=0;PRO=0;QA=1856;QR=7640;RO=201;RPL=0;RPP=107.241;RPPR=439.476;RPR=48;RUN=1;SAF=48;SAP=107.241;SAR=0;SRF=201;SRP=439.476;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:65:53,12:53:2017:12:459:-22.0647,0,-162.194 0/1:74:55,19:55:2097:19:736:-43.9379,0,-166.679 0/0:69:64,5:64:2420:5:195:0,-2.89108,-200.13 0/1:41:29,12:29:1106:12:466:-29.9499,0,-87.5012 dDocent_Contig_2297 209 . N G 75.959 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=4.60517;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=80;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:80:-7.59157,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_2298 7 . A T 9581.81 . AB=0.766667;ABP=188.309;AC=5;AF=0.625;AN=8;AO=313;CIGAR=1X;DP=391;DPB=391;DPRA=0;EPP=682.681;EPPR=172.385;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=11966;QR=2961;RO=78;RPL=0;RPP=682.681;RPPR=172.385;RPR=313;RUN=1;SAF=313;SAP=682.681;SAR=0;SRF=78;SRP=172.385;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:121:20,101:20:768:101:3873:-312.25,0,-33.0227 1/1:91:8,83:8:280:83:3193:-261.989,-1.8638,0 0/1:133:37,96:37:1419:96:3649:-288.496,0,-87.9552 0/1:46:13,33:13:494:33:1251:-99.0377,0,-30.958 dDocent_Contig_2299 47 . G T 671.679 . AB=0.159091;ABP=269.509;AC=1;AF=0.125;AN=8;AO=55;CIGAR=1X;DP=864;DPB=864;DPRA=0;EPP=122.441;EPPR=1718.65;GTI=0;LEN=1;MEANALT=1.75;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.986352;PAO=0;PQA=0;PQR=0;PRO=0;QA=2146;QR=31708;RO=806;RPL=0;RPP=122.441;RPPR=1718.65;RPR=55;RUN=1;SAF=55;SAP=122.441;SAR=0;SRF=806;SRP=1753.22;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:292:281,9:281:11100:9:344:0,-56.2588,-967.004 0/1:264:222,42:222:8688:42:1639:-68.2648,0,-701.964 0/0:172:170,2:170:6678:2:81:0,-44.0914,-593.061 0/0:136:133,2:133:5242:2:82:0,-33.2688,-463.871 dDocent_Contig_2300 107 . N A 982.724 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=33;CIGAR=1X;DP=33;DPB=33;DPRA=0;EPP=74.6689;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1070;QR=0;RO=0;RPL=0;RPP=74.6689;RPPR=0;RPR=33;RUN=1;SAF=0;SAP=74.6689;SAR=33;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:12:0,12:0:0:12:374:-33.9615,-3.61236,0 1/1:18:0,18:0:0:18:595:-53.8624,-5.41854,0 1/1:1:0,1:0:0:1:31:-3.09945,-0.30103,0 1/1:2:0,2:0:0:2:70:-6.6474,-0.60206,0 dDocent_Contig_2301 98 . N A 93.7085 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=94;QR=0;RO=0;RPL=3;RPP=9.52472;RPPR=0;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1:0,1:0:0:1:27:-2.69978,-0.30103,0 1/1:2:0,2:0:0:2:67:-6.36314,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_2302 97 . C T 223.332 . AB=0.22807;ABP=39.6206;AC=1;AF=0.125;AN=8;AO=19;CIGAR=1X;DP=214;DPB=214;DPRA=1.93151;EPP=44.2683;EPPR=426.447;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=651;QR=6661;RO=195;RPL=19;RPP=44.2683;RPPR=426.447;RPR=0;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=195;SRP=426.447;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:57:44,13:44:1502:13:444:-23.1291,0,-118.313 0/0:84:78,6:78:2676:6:207:0,-6.31834,-222.129 0/0:50:50,0:50:1693:0:0:0,-15.0515,-152.655 0/0:23:23,0:23:790:0:0:0,-6.92369,-71.4178 dDocent_Contig_2304 15 . C T 39.7756 . AB=0.142857;ABP=26.2761;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X2M1X1M1X;DP=66;DPB=66;DPRA=1.4;EPP=9.52472;EPPR=137.642;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.951613;PAO=0;PQA=0;PQR=0;PRO=0;QA=119;QR=2473;RO=62;RPL=0;RPP=9.52472;RPPR=137.642;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:21:18,3:18:720:3:119:-4.77338,0,-58.8072 0|0:19:18,0:18:719:0:0:0,-5.41854,-64.6574 0|0:17:17,0:17:675:0:0:0,-5.11751,-61.0831 0|0:9:9,0:9:359:0:0:0,-2.70927,-32.6741 dDocent_Contig_2305 7 . T A 730.481 . AB=0.206704;ABP=136.756;AC=2;AF=0.25;AN=8;AO=37;CIGAR=1X;DP=331;DPB=331;DPRA=1.17763;EPP=83.3548;EPPR=641.423;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1416;QR=11318;RO=294;RPL=0;RPP=83.3548;RPPR=641.423;RPR=37;RUN=1;SAF=37;SAP=83.3548;SAR=0;SRF=294;SRP=641.423;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:87:58,29:58:2244:29:1108:-73.8335,0,-175.988 0/1:92:84,8:84:3236:8:308:-0.38747,0,-263.692 0/0:79:79,0:79:3039:0:0:0,-23.7814,-273.671 0/0:73:73,0:73:2799:0:0:0,-21.9752,-252.092 dDocent_Contig_2307 23 . T A 34228 . AB=0.867733;ABP=1619.22;AC=4;AF=0.5;AN=8;AO=1194;CIGAR=1X2M1X;DP=1376;DPB=1376;DPRA=0;EPP=2595.75;EPPR=376.504;GTI=0;LEN=1;MEANALT=3;MQM=39.9523;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.991625;PAIREDR=0.453488;PAO=0;PQA=0;PQR=0;PRO=0;QA=46678;QR=6753;RO=172;RPL=0;RPP=2595.75;RPPR=376.504;RPR=1194;RUN=1;SAF=1194;SAP=2595.75;SAR=0;SRF=172;SRP=376.504;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:241:51,190:51:2015:190:7455:-533.731,0,-109.012 0|1:505:56,445:56:2184:445:17428:-1286.82,0,-45.6115 0|1:364:38,325:38:1496:325:12697:-953.663,0,-25.3287 0|1:266:27,234:27:1058:234:9098:-653.572,0,-16.5763 dDocent_Contig_2309 56 . G T 651.665 . AB=0.203704;ABP=126.543;AC=3;AF=0.375;AN=8;AO=33;CIGAR=1X;DP=240;DPB=240;DPRA=0.692308;EPP=74.6689;EPPR=452.505;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1294;QR=8196;RO=207;RPL=33;RPP=74.6689;RPPR=452.505;RPR=0;RUN=1;SAF=33;SAP=74.6689;SAR=0;SRF=207;SRP=452.505;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:75:52,23:52:2051:23:889:-57.7331,0,-162.207 0/0:78:78,0:78:3069:0:0:0,-23.4803,-276.302 0/1:38:34,4:34:1364:4:161:-3.43576,0,-111.578 0/1:49:43,6:43:1712:6:244:-7.58836,0,-139.555 dDocent_Contig_2310 7 . T C 884.292 . AB=0.204225;ABP=110.911;AC=2;AF=0.25;AN=8;AO=29;CIGAR=3X;DP=162;DPB=162;DPRA=0;EPP=65.983;EPPR=254.901;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1091;QR=4416;RO=116;RPL=0;RPP=65.983;RPPR=254.901;RPR=29;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=116;SRP=254.901;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:66:50,3,12:50:1905:3,12:112,459:-22.6165,-28.4997,-183.864,0,-147.103,-152.66 0|1:48:29,18,0:29:1099:18,0:671,0:-46.4447,0,-84.9495,-55.1745,-90.3681,-145.295 0|1:28:20,8,0:20:759:8,0:308,0:-19.6533,0,-60.2088,-25.6739,-62.617,-87.9078 0|0:20:17,0,3:17:653:0,3:0,115:-4.70443,-9.82194,-63.4286,0,-53.9898,-53.0867 dDocent_Contig_2311 11 . T C 396.217 . AB=0.176471;ABP=126.656;AC=4;AF=0.5;AN=8;AO=24;CIGAR=1X;DP=136;DPB=136;DPRA=0;EPP=55.1256;EPPR=246.215;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=932;QR=4504;RO=112;RPL=0;RPP=55.1256;RPPR=246.215;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=112;SRP=246.215;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:56:42,14:42:1683:14:547:-32.7091,0,-134.824 0/1:50:45,5:45:1827:5:187:-2.13422,0,-149.578 0/1:21:17,4:17:678:4:158:-8.27703,0,-55.025 0/1:9:8,1:8:316:1:40:-1.28641,0,-26.0951 dDocent_Contig_2312 27 . C A 120.438 . 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N G 283.513 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=8;CIGAR=1X;DP=8;DPB=8;DPRA=0;EPP=20.3821;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=8.76405;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=311;QR=0;RO=0;RPL=0;RPP=20.3821;RPPR=0;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:8:0,8:0:0:8:311:-28.3512,-2.40824,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_2318 24 . A T 3609.69 . AB=0.455516;ABP=7.84009;AC=4;AF=0.5;AN=8;AO=128;CIGAR=1X;DP=281;DPB=281;DPRA=0;EPP=280.959;EPPR=335.246;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=0.90625;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4994;QR=6048;RO=153;RPL=0;RPP=280.959;RPPR=335.246;RPR=128;RUN=1;SAF=128;SAP=280.959;SAR=0;SRF=153;SRP=335.246;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:87:36,51:36:1424:51:1958:-150.231,0,-102.227 0/1:88:65,23:65:2558:23:889:-53.8295,0,-203.873 0/1:57:19,38:19:762:38:1521:-119.975,0,-51.7446 0/1:49:33,16:33:1304:16:626:-41.9236,0,-102.881 dDocent_Contig_2319 31 . C G 1293.99 . AB=0.368421;ABP=23.0107;AC=4;AF=0.5;AN=8;AO=49;CIGAR=1X;DP=133;DPB=133;DPRA=0;EPP=109.412;EPPR=183.243;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1924;QR=3308;RO=83;RPL=0;RPP=109.412;RPPR=183.243;RPR=49;RUN=1;SAF=49;SAP=109.412;SAR=0;SRF=83;SRP=183.243;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:47:41,6:41:1648:6:217:-5.72845,0,-134.399 0/1:43:28,14:28:1110:14:563:-37.9689,0,-87.1411 0/1:23:8,15:8:314:15:592:-46.6948,0,-21.6975 0/1:20:6,14:6:236:14:552:-43.9969,0,-15.5891 dDocent_Contig_2320 7 . A T 9458.43 . AB=0.274083;ABP=389.582;AC=3;AF=0.375;AN=8;AO=239;CIGAR=1X3M1X2M1X4M1D2M1X4M2D4M;DP=872;DPB=848.154;DPRA=0;EPP=521.992;EPPR=695.71;GTI=0;LEN=1;MEANALT=8.5;MQM=59.9833;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0.666667;PQA=24;PQR=24;PRO=0.666667;QA=8866;QR=12403;RO=319;RPL=0;RPP=521.992;RPPR=695.71;RPR=239;RUN=1;SAF=239;SAP=521.992;SAR=0;SRF=319;SRP=695.71;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:275:41,93,119:41:1610:93,119:3429,4589:-512.413,-244.381,-348.81,-147.952,0,-244.559 0|1:254:109,74,56:109:4240:74,56:2760,2137:-193.113,0,-326.173,-50.6214,-173.152,-382.215 0|1:210:94,56,49:94:3665:56,49:2077,1900:-141.616,0,-284.392,-13.8278,-145.171,-300.335 0|0:133:75,16,40:75:2888:16,40:600,1538:-103.691,-77.1308,-309.435,0,-187.998,-225.094 dDocent_Contig_2321 100 . T C 552.437 . AB=0.408163;ABP=6.59988;AC=1;AF=0.125;AN=8;AO=22;CIGAR=1X;DP=144;DPB=144;DPRA=0.822785;EPP=50.7827;EPPR=267.93;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=832;QR=4612;RO=122;RPL=0;RPP=50.7827;RPPR=267.93;RPR=22;RUN=1;SAF=0;SAP=50.7827;SAR=22;SRF=0;SRP=267.93;SRR=122;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:49:29,20:29:1103:20:783:-56.0366,0,-84.8217 0/0:61:61,0:61:2308:0:0:0,-18.3628,-207.932 0/0:18:18,0:18:675:0:0:0,-5.41854,-61.0751 0/0:16:14,2:14:526:2:49:0,-0.166643,-43.0309 dDocent_Contig_2322 58 . C T 490.615 . AB=0.171975;ABP=149.744;AC=2;AF=0.25;AN=8;AO=36;CIGAR=1X;DP=329;DPB=329;DPRA=0;EPP=81.1833;EPPR=639.252;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.8225;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.993174;PAO=0;PQA=0;PQR=0;PRO=0;QA=1451;QR=11708;RO=293;RPL=36;RPP=81.1833;RPPR=639.252;RPR=0;RUN=1;SAF=36;SAP=81.1833;SAR=0;SRF=293;SRP=639.252;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:62:51,11:51:2026:11:438:-21.1097,0,-163.87 0/0:94:89,5:89:3550:5:201:0,-9.82681,-301.05 0/1:95:79,16:79:3144:16:649:-30.1456,0,-254.439 0/0:78:74,4:74:2988:4:163:0,-8.42191,-252.546 dDocent_Contig_2323 202 . C T 35.5428 . AB=0.133333;ABP=38.0434;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=315;DPB=315;DPRA=0.315789;EPP=11.6962;EPPR=678.338;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=148;QR=11350;RO=311;RPL=4;RPP=11.6962;RPPR=678.338;RPR=0;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=678.338;SRR=311;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:112:112,0:112:4111:0:0:0,-33.7154,-370.146 0/0:93:93,0:93:3388:0:0:0,-27.9958,-305.116 0/0:80:80,0:80:2927:0:0:0,-24.0824,-263.642 0/1:30:26,4:26:924:4:148:-4.65107,0,-74.4355 dDocent_Contig_2325 61 . A T 816.133 . AB=0.174419;ABP=240.559;AC=4;AF=0.5;AN=8;AO=45;CIGAR=1X;DP=258;DPB=258;DPRA=0;EPP=100.727;EPPR=465.534;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1802;QR=8514;RO=213;RPL=45;RPP=100.727;RPPR=465.534;RPR=0;RUN=1;SAF=45;SAP=100.727;SAR=0;SRF=213;SRP=465.534;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:64:46,18:46:1838:18:718:-45.6784,0,-146.368 0/1:118:102,16:102:4083:16:648:-23.1322,0,-331.925 0/1:41:33,8:33:1306:8:315:-16.371,0,-105.466 0/1:35:32,3:32:1287:3:121:-0.744147,0,-105.561 dDocent_Contig_2326 98 . N G 367.949 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=14;CIGAR=1X;DP=14;DPB=14;DPRA=0;EPP=33.4109;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=6.77626e-21;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=396;QR=0;RO=0;RPL=14;RPP=33.4109;RPPR=0;RPR=0;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:86:-8.02409,-0.90309,0 1/1:10:0,10:0:0:10:305:-27.7469,-3.0103,0 ./.:.:.:.:.:.:.:. 1/1:1:0,1:0:0:1:5:-0.499999,-0.30103,0 dDocent_Contig_2327 22 . T G 437.912 . AB=0.135246;ABP=284.981;AC=2;AF=0.25;AN=8;AO=34;CIGAR=1X;DP=515;DPB=515;DPRA=0.858796;EPP=76.8404;EPPR=1045.32;GTI=0;LEN=1;MEANALT=1.33333;MQM=59.4706;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=0.997917;PAO=0;PQA=0;PQR=0;PRO=0;QA=1355;QR=19172;RO=480;RPL=0;RPP=76.8404;RPPR=1045.32;RPR=34;RUN=1;SAF=34;SAP=76.8404;SAR=0;SRF=480;SRP=1045.32;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:144:144,0:144:5751:0:0:0,-43.3483,-517.375 0/0:127:126,1:126:5016:1:34:0,-34.8319,-447.921 0/1:151:131,20:131:5260:20:795:-26.4099,0,-427.774 0/1:93:79,13:79:3145:13:526:-19.5751,0,-255.173 dDocent_Contig_2328 20 . G A 41.7146 . AB=0.129032;ABP=40.0654;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=279;DPB=279;DPRA=0.765823;EPP=13.8677;EPPR=597.994;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.99635;PAO=0;PQA=0;PQR=0;PRO=0;QA=198;QR=10993;RO=274;RPL=0;RPP=13.8677;RPPR=597.994;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=274;SRP=597.994;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:107:107,0:107:4295:0:0:0,-32.2102,-386.487 0/0:51:51,0:51:2041:0:0:0,-15.3525,-183.873 0/0:90:89,1:89:3576:1:40:0,-23.097,-317.85 0/1:31:27,4:27:1081:4:158:-5.26834,0,-88.2434 dDocent_Contig_2330 14 . G A 3501.65 . AB=0.656977;ABP=39.8243;AC=4;AF=0.5;AN=8;AO=113;CIGAR=1X;DP=172;DPB=172;DPRA=0;EPP=248.387;EPPR=131.127;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4509;QR=2337;RO=59;RPL=0;RPP=248.387;RPPR=131.127;RPR=113;RUN=1;SAF=113;SAP=248.387;SAR=0;SRF=59;SRP=131.127;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:55:12,43:12:476:43:1714:-137.924,0,-26.6316 0/1:47:11,36:11:420:36:1451:-116.689,0,-23.9963 0/1:44:24,20:24:956:20:804:-59.4316,0,-73.0987 0/1:26:12,14:12:485:14:540:-41.1109,0,-36.1747 dDocent_Contig_2331 77 . A G 6906.29 . AB=0.756458;ABP=157.826;AC=5;AF=0.625;AN=8;AO=252;CIGAR=1X;DP=318;DPB=318;DPRA=0;EPP=550.221;EPPR=146.327;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=8608;QR=2381;RO=66;RPL=252;RPP=550.221;RPPR=146.327;RPR=0;RUN=1;SAF=252;SAP=550.221;SAR=0;SRF=66;SRP=146.327;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:81:41,40:41:1469:40:1375:-99.6649,0,-108.115 0/1:151:19,132:19:700:132:4531:-362.528,0,-17.8767 1/1:47:0,47:0:0:47:1578:-142.306,-14.1484,0 0/1:39:6,33:6:212:33:1124:-89.7211,0,-7.68391 dDocent_Contig_2332 44 . T G 1318.09 . AB=0.424779;ABP=8.56389;AC=4;AF=0.5;AN=8;AO=48;CIGAR=1X;DP=113;DPB=113;DPRA=0;EPP=98.736;EPPR=144.156;GTI=0;LEN=1;MEANALT=1;MQM=59.3958;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1875;QR=2615;RO=65;RPL=47;RPP=98.736;RPPR=144.156;RPR=1;RUN=1;SAF=48;SAP=107.241;SAR=0;SRF=65;SRP=144.156;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:39:27,12:27:1089:12:470:-30.8828,0,-86.5543 0/1:39:13,26:13:523:26:1034:-81.6113,0,-35.6763 0/1:11:10,1:10:403:1:40:-0.276254,0,-33.3162 0/1:24:15,9:15:600:9:331:-22.899,0,-47.1094 dDocent_Contig_2333 98 . N G 66.5172 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=4.60517;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=70;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:70:-6.6474,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_2334 87 . C T 4942.01 . AB=0.464435;ABP=8.26181;AC=4;AF=0.5;AN=8;AO=222;CIGAR=1X;DP=478;DPB=478;DPRA=0;EPP=485.077;EPPR=558.907;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7133;QR=8574;RO=256;RPL=222;RPP=485.077;RPPR=558.907;RPR=0;RUN=1;SAF=222;SAP=485.077;SAR=0;SRF=256;SRP=558.907;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:213:112,101:112:3736:101:3291:-232.312,0,-272.34 0/1:138:63,75:63:2131:75:2345:-169.767,0,-150.518 0/1:75:51,24:51:1691:24:782:-48.109,0,-129.896 0/1:52:30,22:30:1016:22:715:-49.0023,0,-76.0949 dDocent_Contig_2336 8 . C A 40775.8 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=1236;CIGAR=1X;DP=1279;DPB=1279;DPRA=0;EPP=2669.61;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1.25;MQM=58.2063;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.911003;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=47337;QR=1620;RO=42;RPL=0;RPP=2686.95;RPPR=94.2121;RPR=1236;RUN=1;SAF=1234;SAP=2669.61;SAR=2;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:552:14,537:14:546:537:20548:-1781.03,-116.771,0 1/1:405:20,385:20:763:385:14757:-1248.52,-52.92,0 1/1:221:1,220:1:39:220:8453:-752.802,-62.6311,0 1/1:101:7,94:7:272:94:3579:-294.616,-5.5568,0 dDocent_Contig_2338 14 . T A 5445.44 . AB=0.353765;ABP=109.07;AC=4;AF=0.5;AN=8;AO=202;CIGAR=1X;DP=571;DPB=571;DPRA=0;EPP=441.648;EPPR=804.284;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=8007;QR=14678;RO=369;RPL=0;RPP=441.648;RPPR=804.284;RPR=202;RUN=1;SAF=202;SAP=441.648;SAR=0;SRF=369;SRP=804.284;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:213:156,57:156:6231:57:2247:-138.285,0,-496.437 0/1:187:107,80:107:4252:80:3174:-229.445,0,-326.365 0/1:107:65,42:65:2576:42:1668:-118.145,0,-199.774 0/1:64:41,23:41:1619:23:918:-63.6591,0,-126.689 dDocent_Contig_2340 12 . C T 116.95 . AB=0.206897;ABP=24.6501;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=193;DPB=193;DPRA=0.530488;EPP=16.0391;EPPR=406.904;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.709677;PAO=0;PQA=0;PQR=0;PRO=0;QA=235;QR=7383;RO=186;RPL=0;RPP=16.0391;RPPR=406.904;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=186;SRP=406.904;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:82:81,0:81:3226:0:0:0,-24.3834,-290.238 0/0:59:59,0:59:2325:0:0:0,-17.7608,-209.414 0/1:29:23,6:23:902:6:235:-12.7919,0,-72.7559 0/0:23:23,0:23:930:0:0:0,-6.92369,-83.9988 dDocent_Contig_2341 209 . N G 435.68 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=12;CIGAR=1X;DP=12;DPB=12;DPRA=0;EPP=29.068;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=466;QR=0;RO=0;RPL=12;RPP=29.068;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=29.068;SAR=12;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1:0,1:0:0:1:41:-4.09457,-0.30103,0 1/1:8:0,8:0:0:8:306:-27.8977,-2.40824,0 1/1:3:0,3:0:0:3:119:-11.095,-0.90309,0 ./.:.:.:.:.:.:.:. dDocent_Contig_2342 21 . C G 151.096 . AB=0.109756;ABP=219.946;AC=1;AF=0.125;AN=8;AO=26;CIGAR=1X;DP=525;DPB=525;DPRA=0;EPP=59.4686;EPPR=1077.89;GTI=0;LEN=1;MEANALT=1.5;MQM=49.7692;MQMR=48;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.662626;PAO=0;PQA=0;PQR=0;PRO=0;QA=1050;QR=19954;RO=495;RPL=0;RPP=59.4686;RPPR=1077.89;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=495;SRP=1077.89;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:164:146,18:146:5897:18:730:-15.9053,0,-411.13 0/0:166:162,1:162:6531:1:36:0,-48.0426,-490.575 0/0:129:127,2:127:5107:2:79:0,-31.3755,-388.321 0/0:66:60,5:60:2419:5:205:0,-1.22938,-182.438 dDocent_Contig_2343 153 . C T 42.2932 . AB=0.112903;ABP=83.705;AC=1;AF=0.125;AN=8;AO=11;CIGAR=1X;DP=212;DPB=212;DPRA=1.13889;EPP=26.8965;EPPR=439.476;GTI=0;LEN=1;MEANALT=1;MQM=40;MQMR=40;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=419;QR=7824;RO=201;RPL=0;RPP=26.8965;RPPR=439.476;RPR=11;RUN=1;SAF=0;SAP=26.8965;SAR=11;SRF=0;SRP=439.476;SRR=201;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:62:55,7:55:2159:7:281:-5.0214,0,-161.579 0/0:73:72,1:72:2774:1:38:0,-18.3876,-228.084 0/0:48:48,0:48:1889:0:0:0,-14.4494,-158.08 0/0:29:26,3:26:1002:3:100:0,-0.0596264,-75.8098 dDocent_Contig_2344 25 . A T 75.1406 . AB=0.130435;ABP=57.5803;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=168;DPB=168;DPRA=1.13115;EPP=16.0391;EPPR=354.789;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=242;QR=6433;RO=162;RPL=0;RPP=16.0391;RPPR=354.789;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=162;SRP=354.789;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:46:40,6:40:1576:6:242:-8.30994,0,-128.237 0/0:37:37,0:37:1477:0:0:0,-11.1381,-133.173 0/0:62:62,0:62:2478:0:0:0,-18.6639,-223.166 0/0:23:23,0:23:902:0:0:0,-6.92369,-81.4837 dDocent_Contig_2345 9 . G A 1446.68 . AB=0.538462;ABP=4.34659;AC=4;AF=0.5;AN=8;AO=56;CIGAR=1X;DP=104;DPB=104;DPRA=0;EPP=124.613;EPPR=98.736;GTI=0;LEN=1;MEANALT=1;MQM=39.8393;MQMR=59.7917;NS=4;NUMALT=1;ODDS=0;PAIRED=0.0714286;PAIREDR=0.979167;PAO=0;PQA=0;PQR=0;PRO=0;QA=2111;QR=1846;RO=48;RPL=0;RPP=124.613;RPPR=107.241;RPR=56;RUN=1;SAF=56;SAP=124.613;SAR=0;SRF=47;SRP=98.736;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:34:18,16:18:691:16:586:-39.7597,0,-52.2807 0/1:31:17,14:17:648:14:536:-36.3485,0,-49.3243 0/1:28:12,16:12:468:16:613:-43.7845,0,-34.0437 0/1:11:1,10:1:39:10:376:-28.9362,0,-0.585234 dDocent_Contig_2346 57 . T C 791.593 . AB=0.4125;ABP=8.33041;AC=2;AF=0.25;AN=8;AO=34;CIGAR=1X;DP=106;DPB=106;DPRA=4.71429;EPP=76.8404;EPPR=159.356;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1201;QR=2240;RO=72;RPL=34;RPP=76.8404;RPPR=159.356;RPR=0;RUN=1;SAF=34;SAP=76.8404;SAR=0;SRF=72;SRP=159.356;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:19:18,1:18:560:1:37:0,-2.02174,-47.0001 0/1:63:33,30:33:991:30:1051:-75.931,0,-70.5041 0/1:17:14,3:14:468:3:113:-5.42203,0,-37.3224 0/0:7:7,0:7:221:0:0:0,-2.10721,-20.201 dDocent_Contig_2347 139 . T C 247.693 . AB=0.473684;ABP=3.12459;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X;DP=86;DPB=86;DPRA=0.850746;EPP=22.5536;EPPR=170.214;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=58.5584;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.961039;PAO=0;PQA=0;PQR=0;PRO=0;QA=347;QR=2936;RO=77;RPL=0;RPP=22.5536;RPPR=170.214;RPR=9;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=170.214;SRR=77;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:8:8,0:8:288:0:0:0,-2.40824,-23.9144 0/0:49:49,0:49:1908:0:0:0,-14.7505,-171.93 0/0:10:10,0:10:383:0:0:0,-3.0103,-34.8181 0/1:19:10,9:10:357:9:347:-25.8662,0,-26.7425 dDocent_Contig_2348 27 . G A 11963.9 . AB=0.4777;ABP=6.69059;AC=4;AF=0.5;AN=8;AO=407;CIGAR=1X;DP=852;DPB=852;DPRA=0;EPP=886.8;EPPR=958.458;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=16187;QR=17473;RO=440;RPL=0;RPP=886.8;RPPR=958.458;RPR=407;RUN=1;SAF=407;SAP=886.8;SAR=0;SRF=440;SRP=958.458;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:279:129,145:129:5164:145:5785:-437.58,0,-381.752 0/1:305:161,144:161:6357:144:5723:-423.062,0,-480.073 0/1:185:90,95:90:3595:95:3764:-283.07,0,-267.884 0/1:83:60,23:60:2357:23:915:-57.6703,0,-187.305 dDocent_Contig_2349 17 . G C 289.361 . AB=0.255319;ABP=27.4509;AC=1;AF=0.125;AN=8;AO=13;CIGAR=1X;DP=536;DPB=536;DPRA=0.6;EPP=31.2394;EPPR=1138.69;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=524;QR=20482;RO=523;RPL=0;RPP=31.2394;RPPR=1138.69;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=523;SRP=1138.69;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:168:168,0:168:6579:0:0:0,-50.573,-591.866 0/0:167:167,0:167:6541:0:0:0,-50.272,-588.462 0/0:154:153,1:153:5975:1:37:0,-42.6608,-533.869 0/1:47:35,12:35:1387:12:487:-30.033,0,-110.942 dDocent_Contig_2350 73 . T C 125.975 . AB=0.16;ABP=53.2147;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=150;DPB=150;DPRA=1.5;EPP=20.3821;EPPR=309.188;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=312;QR=5321;RO=141;RPL=8;RPP=20.3821;RPPR=309.188;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=141;SRP=309.188;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:50:42,8:42:1564:8:312:-13.3934,0,-125.979 0/0:49:48,0:48:1833:0:0:0,-14.4494,-164.972 0/0:41:41,0:41:1553:0:0:0,-12.3422,-140.038 0/0:10:10,0:10:371:0:0:0,-3.0103,-33.7384 dDocent_Contig_2351 136 . C T 252.341 . AB=0.305556;ABP=14.8328;AC=2;AF=0.25;AN=8;AO=11;CIGAR=1X;DP=51;DPB=51;DPRA=2.4;EPP=26.8965;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.975;PAO=0;PQA=0;PQR=0;PRO=0;QA=417;QR=1465;RO=40;RPL=0;RPP=26.8965;RPPR=89.8692;RPR=11;RUN=1;SAF=0;SAP=26.8965;SAR=11;SRF=0;SRP=89.8692;SRR=40;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:8:8,0:8:301:0:0:0,-2.40824,-27.4459 0/1:17:9,8:9:336:8:300:-22.2371,0,-25.4733 0/1:19:16,3:16:559:3:117:-5.19081,0,-44.9035 0/0:7:7,0:7:269:0:0:0,-2.10721,-24.5745 dDocent_Contig_2352 17 . A T 524.088 . AB=0.4;ABP=3.44459;AC=5;AF=0.833333;AN=6;AO=16;CIGAR=1M1I1X2M1X2M8I2M1X;DP=19;DPB=33.4;DPRA=0;EPP=37.7539;EPPR=7.35324;GTI=0;LEN=1;MEANALT=1.33333;MQM=41.75;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=630;QR=79;RO=2;RPL=0;RPP=37.7539;RPPR=7.35324;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=2;SRP=7.35324;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. 1|1:12:0,12:0:0:12:470:-40.6148,-3.61236,0 1|1:2:0,2:0:0:2:80:-7.19639,-0.60206,0 0|1:5:2,2:2:79:2:80:-5.51696,0,-5.8956 dDocent_Contig_2354 26 . G A 167.014 . AB=0.133333;ABP=143.143;AC=2;AF=0.25;AN=8;AO=16;CIGAR=1X;DP=220;DPB=220;DPRA=1.2;EPP=37.7539;EPPR=445.991;GTI=0;LEN=1;MEANALT=1;MQM=53.75;MQMR=59.6029;NS=4;NUMALT=1;ODDS=0;PAIRED=0.8125;PAIREDR=0.941176;PAO=0;PQA=0;PQR=0;PRO=0;QA=644;QR=7912;RO=204;RPL=0;RPP=37.7539;RPPR=445.991;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=204;SRP=445.991;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:36:36,0:36:1402:0:0:0,-10.8371,-126.435 0/1:64:58,6:58:2282:6:242:-2.8914,0,-186.192 0/0:64:64,0:64:2502:0:0:0,-19.2659,-225.33 0/1:56:46,10:46:1726:10:402:-16.0004,0,-138.473 dDocent_Contig_2355 22 . A G 89.6391 . AB=0.107843;ABP=139.26;AC=1;AF=0.125;AN=8;AO=13;CIGAR=1X;DP=256;DPB=256;DPRA=0.979487;EPP=31.2394;EPPR=530.678;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.9753;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=526;QR=9699;RO=243;RPL=0;RPP=31.2394;RPPR=530.678;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=243;SRP=530.678;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:65:65,0:65:2596:0:0:0,-19.5669,-233.773 0/1:102:91,11:91:3617:11:449:-10.0608,0,-294.838 0/0:56:55,1:55:2197:1:36:0,-13.2594,-194.303 0/0:33:32,1:32:1289:1:41:0,-5.83942,-112.181 dDocent_Contig_2356 7 . A T 4842.28 . AB=0.209223;ABP=862.997;AC=4;AF=0.5;AN=8;AO=245;CIGAR=1X;DP=1171;DPB=1171;DPRA=0;EPP=535.021;EPPR=2011.62;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=5.55112e-17;PAIRED=1;PAIREDR=0.997838;PAO=0;PQA=0;PQR=0;PRO=0;QA=9341;QR=35268;RO=925;RPL=0;RPP=535.021;RPPR=2011.62;RPR=245;RUN=1;SAF=245;SAP=535.021;SAR=0;SRF=925;SRP=2011.62;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:314:266,48:266:10076:48:1805:-68.1731,0,-811.978 0/1:429:348,81:348:13308:81:3101:-150.103,0,-1068.01 0/1:251:173,78:173:6602:78:2994:-194.066,0,-518.535 0/1:177:138,38:138:5282:38:1441:-76.8752,0,-422.297 dDocent_Contig_2357 1 . N G 149.68 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=162;QR=0;RO=0;RPL=0;RPP=11.6962;RPPR=0;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:4:0,4:0:0:4:162:-14.967,-1.20412,0 ./.:.:.:.:.:.:.:. dDocent_Contig_2358 13 . T C 112.61 . AB=0.152174;ABP=51.3492;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=127;DPB=127;DPRA=1.7037;EPP=18.2106;EPPR=263.587;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=287;QR=4803;RO=120;RPL=0;RPP=18.2106;RPPR=263.587;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=120;SRP=263.587;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:51:51,0:51:2046:0:0:0,-15.3525,-184.323 0/1:46:39,7:39:1550:7:287:-12.3579,0,-125.892 0/0:22:22,0:22:892:0:0:0,-6.62266,-80.5866 0/0:8:8,0:8:315:0:0:0,-2.40824,-28.7132 dDocent_Contig_2359 81 . G A 1893.2 . AB=0.55303;ABP=6.23461;AC=4;AF=0.5;AN=8;AO=73;CIGAR=1X;DP=132;DPB=132;DPRA=0;EPP=161.528;EPPR=131.127;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.917808;PAIREDR=0.79661;PAO=0;PQA=0;PQR=0;PRO=0;QA=2586;QR=2072;RO=59;RPL=73;RPP=161.528;RPPR=131.127;RPR=0;RUN=1;SAF=73;SAP=161.528;SAR=0;SRF=59;SRP=131.127;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:47:17,30:17:591:30:1064:-81.9191,0,-39.3608 0/1:46:25,21:25:906:21:725:-51.715,0,-68.0103 0/1:15:6,9:6:189:9:325:-25.0801,0,-12.8017 0/1:24:11,13:11:386:13:472:-35.5957,0,-27.8481 dDocent_Contig_2360 82 . G A 232.473 . AB=0.244444;ABP=28.5372;AC=3;AF=0.375;AN=8;AO=12;CIGAR=1X;DP=61;DPB=61;DPRA=0;EPP=29.068;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=476;QR=1972;RO=49;RPL=12;RPP=29.068;RPPR=109.412;RPR=0;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:6,6:6:245:6:238:-18.1809,0,-18.8171 0/1:13:11,2:11:438:2:78:-3.48991,0,-35.8609 0/0:16:15,1:15:605:1:40:0,-0.820801,-50.7907 0/1:20:17,3:17:684:3:120:-5.16671,0,-55.8679 dDocent_Contig_2361 13 . T G 5335.28 . AB=0.692623;ABP=81.6461;AC=4;AF=0.5;AN=8;AO=169;CIGAR=1X;DP=244;DPB=244;DPRA=0;EPP=344.394;EPPR=165.871;GTI=0;LEN=1;MEANALT=1;MQM=59.9645;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=0.976331;PAIREDR=0.986667;PAO=0;PQA=0;PQR=0;PRO=0;QA=6790;QR=3021;RO=75;RPL=0;RPP=369.989;RPPR=165.871;RPR=169;RUN=1;SAF=166;SAP=344.394;SAR=3;SRF=75;SRP=165.871;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:69:26,43:26:1042:43:1722:-134.416,0,-73.2991 0/1:76:18,58:18:718:58:2334:-187.334,0,-42.0613 0/1:71:23,48:23:934:48:1937:-153.149,0,-62.9888 0/1:28:8,20:8:327:20:797:-63.6177,0,-21.3713 dDocent_Contig_2362 28 . G T 129.165 . AB=0.111111;ABP=168.525;AC=1;AF=0.125;AN=8;AO=18;CIGAR=1X;DP=409;DPB=409;DPRA=1.21081;EPP=42.0968;EPPR=852.056;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.994885;PAO=0;PQA=0;PQR=0;PRO=0;QA=731;QR=15693;RO=391;RPL=0;RPP=42.0968;RPPR=852.056;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=391;SRP=852.056;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:126:112,14:112:4482:14:570:-13.7124,0,-365.377 0/0:154:154,0:154:6191:0:0:0,-46.3586,-556.922 0/0:98:94,4:94:3779:4:161:0,-14.626,-325.234 0/0:31:31,0:31:1241:0:0:0,-9.33193,-111.955 dDocent_Contig_2363 9 . T A 2245.37 . AB=0.688073;ABP=36.4988;AC=4;AF=0.5;AN=8;AO=75;CIGAR=1X;DP=109;DPB=109;DPRA=0;EPP=165.871;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2893;QR=1320;RO=34;RPL=0;RPP=165.871;RPPR=76.8404;RPR=75;RUN=1;SAF=75;SAP=165.871;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:34:17,17:17:659:17:662:-49.6821,0,-49.4116 0/1:38:11,27:11:427:27:1041:-82.5586,0,-27.3458 0/1:22:2,20:2:78:20:766:-62.6448,0,-0.780812 0/1:15:4,11:4:156:11:424:-33.9987,0,-9.90184 dDocent_Contig_2365 14 . A G 2462.82 . AB=0.262712;ABP=118.43;AC=3;AF=0.375;AN=8;AO=62;CIGAR=1X1M2X1M1X2M1X2M1X;DP=236;DPB=235.5;DPRA=0;EPP=137.642;EPPR=200.614;GTI=0;LEN=1;MEANALT=4.25;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2366;QR=3524;RO=91;RPL=0;RPP=137.642;RPPR=200.614;RPR=62;RUN=1;SAF=62;SAP=137.642;SAR=0;SRF=91;SRP=200.614;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:89:43,0,9,29:43:1667:0,9,29:0,353,1076:-75.0922,-88.0364,-224.992,-58.9997,-195.96,-193.251,0,-136.964,-107.931,-128.234 1|0:56:15,0,16,23:15:564:0,16,23:0,601,875:-70.2832,-74.7986,-120.999,-25.5674,-71.7666,-66.9501,-3.03188,-49.2325,0,-42.3088 0|1:66:27,0,26,12:27:1071:0,26,12:0,1003,467:-74.2394,-82.3672,-170.536,0,-88.173,-80.3463,-43.9872,-132.158,-49.7962,-128.546 0|1:25:6,2,11,5:6:222:2,11,5:78,409,194:-31.6565,-27.0498,-44.6049,0,-11.738,-14.8399,-17.5202,-29.2644,-2.20795,-34.1726 dDocent_Contig_2366 11 . A T 140.644 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=6;CIGAR=1X;DP=6;DPB=6;DPRA=0;EPP=16.0391;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=26;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=190;QR=0;RO=0;RPL=0;RPP=16.0391;RPPR=0;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:93:-6.51119,-0.90309,0 1/1:3:0,3:0:0:3:97:-7.25003,-0.90309,0 ./.:.:.:.:.:.:.:. dDocent_Contig_2367 47 . T G 40.4629 . AB=0.142857;ABP=26.2761;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=190;DPB=190;DPRA=0.372781;EPP=9.52472;EPPR=409.076;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=123;QR=7359;RO=187;RPL=0;RPP=9.52472;RPPR=409.076;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=187;SRP=409.076;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:85:85,0:85:3364:0:0:0,-25.5875,-302.825 0/0:66:66,0:66:2628:0:0:0,-19.868,-236.651 0/1:21:18,3:18:706:3:123:-5.14316,0,-57.5451 0/0:18:18,0:18:661:0:0:0,-5.41854,-59.8028 dDocent_Contig_2368 209 . N G 198.548 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=5;CIGAR=1X;DP=5;DPB=5;DPRA=0;EPP=13.8677;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=202;QR=0;RO=0;RPL=5;RPP=13.8677;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:79:-7.49763,-0.60206,0 ./.:.:.:.:.:.:.:. 1/1:1:0,1:0:0:1:41:-4.09457,-0.30103,0 1/1:2:0,2:0:0:2:82:-7.77968,-0.60206,0 dDocent_Contig_2369 31 . T C 163.689 . AB=0.0693642;ABP=281.674;AC=2;AF=0.25;AN=8;AO=15;CIGAR=1X3M;DP=238;DPB=238;DPRA=2.84;EPP=35.5824;EPPR=435.176;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.995074;PAO=0;PQA=0;PQR=0;PRO=0;QA=599;QR=7882;RO=203;RPL=0;RPP=35.5824;RPPR=443.819;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=202;SRP=435.176;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:53:46,5,2:46:1797:5,2:195,79:-2.17615,0,-146.216,-9.52114,-141.22,-156.645 0|1:120:95,14,10:95:3696:14,10:547,397:-16.3677,0,-299.507,-12.2803,-271.038,-312.997 0|0:40:37,0,3:37:1435:0,3:0,123:0,-11.1381,-129.009,-0.576411,-118.855,-117.952 0|0:25:25,0,0:25:954:0,0:0,0:0,-7.52575,-86.1644,-7.52575,-86.1644,-86.1644 dDocent_Contig_2370 54 . T C 116.935 . AB=0.150943;ABP=59.0998;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=123;DPB=123;DPRA=2.27143;EPP=20.3821;EPPR=252.73;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=312;QR=4534;RO=115;RPL=8;RPP=20.3821;RPPR=252.73;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=115;SRP=252.73;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:53:45,8:45:1768:8:312:-12.4893,0,-143.395 0/0:15:15,0:15:592:0:0:0,-4.51545,-53.6202 0/0:42:42,0:42:1658:0:0:0,-12.6433,-149.463 0/0:13:13,0:13:516:0:0:0,-3.91339,-46.7877 dDocent_Contig_2371 7 . G T 457.84 . AB=0.173184;ABP=169.073;AC=2;AF=0.25;AN=8;AO=40;CIGAR=1X;DP=341;DPB=341;DPRA=0;EPP=89.8692;EPPR=654.452;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1356;QR=9170;RO=300;RPL=0;RPP=89.8692;RPPR=654.452;RPR=40;RUN=1;SAF=40;SAP=89.8692;SAR=0;SRF=300;SRP=654.452;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:87:84,2:84:2586:2:22:0,-23.9086,-230.856 0/1:129:103,26:103:3152:26:949:-46.8723,0,-245.012 0/0:75:68,7:68:2062:7:218:0,-2.65787,-165.884 0/1:50:45,5:45:1370:5:167:-0.299853,0,-108.499 dDocent_Contig_2372 71 . C T 17379.1 . AB=0.74228;ABP=432.312;AC=4;AF=0.5;AN=8;AO=625;CIGAR=1X;DP=842;DPB=842;DPRA=0;EPP=1360.18;EPPR=472.048;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=22174;QR=7660;RO=216;RPL=625;RPP=1360.18;RPPR=472.048;RPR=0;RUN=1;SAF=625;SAP=1360.18;SAR=0;SRF=216;SRP=472.048;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:267:76,191:76:2703:191:6709:-523.505,0,-163.141 0/1:204:52,151:52:1856:151:5396:-424.588,0,-106.134 0/1:206:39,167:39:1393:167:5920:-470.89,0,-63.6575 0/1:165:49,116:49:1708:116:4149:-323.921,0,-104.331 dDocent_Contig_2373 19 . T C 195.449 . AB=0.153846;ABP=84.19;AC=1;AF=0.125;AN=8;AO=16;CIGAR=1X;DP=279;DPB=279;DPRA=0.843882;EPP=37.7539;EPPR=574.108;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=604;QR=9904;RO=263;RPL=0;RPP=37.7539;RPPR=574.108;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=263;SRP=574.108;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:78:66,12:66:2487:12:483:-20.3407,0,-200.558 0/0:79:79,0:79:2976:0:0:0,-23.7814,-268.005 0/0:87:86,1:86:3249:1:27:0,-23.4898,-289.864 0/0:35:32,3:32:1192:3:94:0,-1.76931,-98.8077 dDocent_Contig_2374 52 . C T 41.9229 . AB=0.123596;ABP=112.535;AC=1;AF=0.125;AN=8;AO=15;CIGAR=1X;DP=210;DPB=210;DPRA=2.5;EPP=35.5824;EPPR=426.447;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=479;QR=7520;RO=195;RPL=15;RPP=35.5824;RPPR=426.447;RPR=0;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=195;SRP=426.447;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:28:28,0:28:1089:0:0:0,-8.42884,-98.3002 0/1:89:78,11:78:2993:11:353:-5.28917,0,-242.707 0/0:61:57,4:57:2211:4:126:0,-6.71327,-187.527 0/0:32:32,0:32:1227:0:0:0,-9.63296,-110.714 dDocent_Contig_2375 15 . C A 290.226 . AB=0.132184;ABP=207.478;AC=2;AF=0.25;AN=8;AO=29;CIGAR=1X;DP=326;DPB=326;DPRA=2.38333;EPP=65.983;EPPR=647.938;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.996633;PAO=0;PQA=0;PQR=0;PRO=0;QA=1163;QR=11931;RO=297;RPL=0;RPP=65.983;RPPR=647.938;RPR=29;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=297;SRP=647.938;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:110:96,14:96:3867:14:559:-17.5384,0,-314.896 0/0:112:106,6:106:4252:6:242:0,-11.558,-360.475 0/1:64:55,9:55:2208:9:362:-13.6781,0,-179.613 0/0:40:40,0:40:1604:0:0:0,-12.0412,-144.593 dDocent_Contig_2376 14 . G A 184.497 . AB=0.164179;ABP=68.6406;AC=1;AF=0.125;AN=8;AO=13;CIGAR=1X;DP=341;DPB=341;DPRA=1.14286;EPP=31.2394;EPPR=715.253;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=499;QR=12993;RO=328;RPL=0;RPP=31.2394;RPPR=715.253;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=328;SRP=715.253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:67:56,11:56:2226:11:434:-19.2456,0,-180.344 0/0:150:149,1:149:5870:1:38:0,-41.3572,-524.33 0/0:77:77,0:77:3064:0:0:0,-23.1793,-275.845 0/0:47:46,1:46:1833:1:27:0,-11.4486,-162.479 dDocent_Contig_2377 70 . A G 365.207 . AB=0.306122;ABP=19.0083;AC=3;AF=0.375;AN=8;AO=15;CIGAR=1X;DP=59;DPB=59;DPRA=1.63333;EPP=35.5824;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=597;QR=1766;RO=44;RPL=15;RPP=35.5824;RPPR=98.5551;RPR=0;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:14,5:14:569:5:197:-12.3845,0,-45.8329 0/0:10:10,0:10:402:0:0:0,-3.0103,-36.5399 0/1:16:11,5:11:434:5:200:-13.5629,0,-34.5983 0/1:14:9,5:9:361:5:200:-14.1651,0,-28.6391 dDocent_Contig_2378 17 . A T 49.3062 . AB=0.133333;ABP=38.0434;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=150;DPB=150;DPRA=0.75;EPP=11.6962;EPPR=320.045;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=0.993151;PAO=0;PQA=0;PQR=0;PRO=0;QA=163;QR=5806;RO=146;RPL=0;RPP=11.6962;RPPR=320.045;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=146;SRP=320.045;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:39:39,0:39:1563:0:0:0,-11.7402,-140.906 0/0:49:49,0:49:1939:0:0:0,-14.7505,-174.709 0/0:32:32,0:32:1288:0:0:0,-9.63296,-116.185 0/1:30:26,4:26:1016:4:163:-6.02753,0,-82.6969 dDocent_Contig_2379 18 . A T 1239.2 . AB=0.167453;ABP=410.284;AC=3;AF=0.375;AN=8;AO=82;CIGAR=1X;DP=591;DPB=591;DPRA=0;EPP=181.071;EPPR=1108.29;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3268;QR=20379;RO=509;RPL=0;RPP=181.071;RPPR=1108.29;RPR=82;RUN=1;SAF=82;SAP=181.071;SAR=0;SRF=509;SRP=1108.29;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:217:180,37:180:7218:37:1488:-68.8382,0,-583.927 0/0:167:156,11:156:6207:11:443:0,-10.0463,-518.161 0/1:135:109,26:109:4390:26:1017:-51.1804,0,-354.398 0/1:72:64,8:64:2564:8:320:-7.49301,0,-209.213 dDocent_Contig_2380 147 . C T 10000 . AB=0.713675;ABP=95.8083;AC=5;AF=0.625;AN=8;AO=307;CIGAR=1X;DP=375;DPB=375;DPRA=0;EPP=669.652;EPPR=150.67;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=11966;QR=2638;RO=68;RPL=0;RPP=669.652;RPPR=150.67;RPR=307;RUN=1;SAF=0;SAP=669.652;SAR=307;SRF=0;SRP=150.67;SRR=68;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:141:1,140:1:33:140:5479:-489.658,-39.1461,0 0/1:123:43,80:43:1681:80:3134:-245.126,0,-114.498 0/1:68:16,52:16:606:52:1986:-158.467,0,-34.395 0/1:43:8,35:8:318:35:1367:-110.345,0,-16.0418 dDocent_Contig_2381 7 . T G 3067.12 . AB=0.738095;ABP=85.7331;AC=4;AF=0.5;AN=8;AO=124;CIGAR=1X;DP=168;DPB=168;DPRA=0;EPP=272.273;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=59.4758;MQMR=59.5;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.204545;PAO=0;PQA=0;PQR=0;PRO=0;QA=4015;QR=1494;RO=44;RPL=0;RPP=272.273;RPPR=98.5551;RPR=124;RUN=1;SAF=124;SAP=272.273;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:55:17,38:17:611:38:1237:-95.039,0,-38.5246 0/1:46:11,35:11:369:35:1084:-83.8773,0,-19.6718 0/1:35:7,28:7:224:28:944:-74.633,0,-9.92885 0/1:32:9,23:9:290:23:750:-58.1528,0,-16.7719 dDocent_Contig_2382 14 . G T 3169.05 . AB=0.105263;ABP=80.1547;AC=0;AF=0;AN=8;AO=6;CIGAR=2X2M1X;DP=216;DPB=216;DPRA=0;EPP=16.0391;EPPR=189.757;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=231;QR=3325;RO=86;RPL=0;RPP=16.0391;RPPR=189.757;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=86;SRP=189.757;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:67:55,0,11,1:55:2127:0,11,1:0,431,40:-18.8735,-35.4302,-210.134,0,-174.695,-171.384,-32.1344,-206.838,-171.4,-206.537 0|0:57:9,0,44,3:9:347:0,44,3:0,1722,121:-138.854,-141.563,-170.056,0,-28.4828,-15.2375,-131.588,-160.082,-18.505,-159.179 0|0:57:13,6,31,5:13:504:6,31,5:231,1218,202:-96.2683,-81.2161,-120.817,0,-22.4422,-32.0762,-83.5269,-105.968,-24.751,-123.429 0|0:35:9,0,22,4:9:347:0,22,4:0,859,158:-67.899,-70.6082,-99.1017,0,-28.4884,-21.8657,-57.6063,-86.0997,-15.4842,-84.8956 dDocent_Contig_2383 11 . T C 330.388 . AB=0;ABP=0;AC=0;AF=0;AN=8;AO=4;CIGAR=2X;DP=417;DPB=417;DPRA=0.429066;EPP=11.6962;EPPR=828.17;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=160;QR=14455;RO=380;RPL=0;RPP=11.6962;RPPR=828.17;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=380;SRP=828.17;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:66:47,0,15,4:47:1778:0,15,4:0,584,160:-33.8347,-47.9831,-193.708,0,-145.715,-141.199,-34.8011,-180.527,-132.533,-179.323 0|0:172:166,0,3,3:166:6324:0,3,3:0,116,123:0,-49.971,-568.658,-40.455,-559.13,-558.227,-39.8072,-558.505,-548.977,-557.602 0|0:117:115,0,0,2:115:4378:0,0,2:0,0,78:0,-34.6184,-393.662,-34.6184,-393.662,-393.662,-27.8172,-387.25,-387.25,-386.648 0|0:62:52,4,0,3:52:1975:4,0,3:160,0,123:0,-2.47409,-163.193,-15.6536,-164.398,-177.579,-5.4975,-154.244,-167.425,-166.522 dDocent_Contig_2384 36 . T A 236.178 . AB=0.181818;ABP=70.7208;AC=2;AF=0.25;AN=8;AO=16;CIGAR=1X;DP=123;DPB=123;DPRA=1.71667;EPP=37.7539;EPPR=235.358;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=608;QR=4241;RO=107;RPL=0;RPP=37.7539;RPPR=235.358;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=107;SRP=235.358;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:26:24,2:24:961:2:76:0,-0.611969,-79.577 0/1:35:32,3:32:1274:3:121:-0.744147,0,-104.395 0/1:42:31,11:31:1222:11:411:-24.6903,0,-97.615 0/0:20:20,0:20:784:0:0:0,-6.0206,-70.8813 dDocent_Contig_2385 19 . G C 1754.31 . AB=0.234043;ABP=205.142;AC=4;AF=0.5;AN=8;AO=77;CIGAR=1X;DP=329;DPB=329;DPRA=0;EPP=170.214;EPPR=550.221;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.980159;PAO=0;PQA=0;PQR=0;PRO=0;QA=3091;QR=10018;RO=252;RPL=0;RPP=170.214;RPPR=550.221;RPR=77;RUN=1;SAF=77;SAP=170.214;SAR=0;SRF=252;SRP=550.221;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:122:93,29:93:3710:29:1172:-69.0303,0,-297.19 0/1:105:77,28:77:3101:28:1119:-69.3769,0,-247.553 0/1:66:55,11:55:2158:11:438:-19.9059,0,-174.518 0/1:36:27,9:27:1049:9:362:-22.1075,0,-83.8598 dDocent_Contig_2386 7 . G C 1994.28 . AB=0.194595;ABP=452.646;AC=4;AF=0.5;AN=8;AO=108;CIGAR=1X;DP=555;DPB=555;DPRA=0;EPP=237.529;EPPR=936.743;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=59.9535;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.990698;PAO=0;PQA=0;PQR=0;PRO=0;QA=4066;QR=13509;RO=430;RPL=0;RPP=237.529;RPPR=936.743;RPR=108;RUN=1;SAF=108;SAP=237.529;SAR=0;SRF=430;SRP=936.743;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:162:115,39:115:3593:39:1449:-84.1197,0,-276.99 0/1:131:110,18:110:3541:18:699:-24.5397,0,-280.174 0/1:145:104,38:104:3148:38:1441:-87.0409,0,-240.566 0/1:117:101,13:101:3227:13:477:-8.71741,0,-256.074 dDocent_Contig_2387 53 . A T 145.405 . AB=0.205882;ABP=28.557;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X;DP=108;DPB=108;DPRA=1.63415;EPP=22.5536;EPPR=217.986;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.666667;PAIREDR=0.959596;PAO=0;PQA=0;PQR=0;PRO=0;QA=362;QR=3898;RO=99;RPL=9;RPP=22.5536;RPPR=217.986;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=99;SRP=217.986;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:34:27,7:27:1080:7:280:-15.3362,0,-87.252 0/0:35:35,0:35:1379:0:0:0,-10.536,-124.37 0/0:33:31,2:31:1194:2:82:0,-2.15431,-99.9654 0/0:6:6,0:6:245:0:0:0,-1.80618,-22.4295 dDocent_Contig_2389 79 . G A 7489.43 . AB=0.819876;ABP=289.186;AC=4;AF=0.5;AN=8;AO=264;CIGAR=1X;DP=322;DPB=322;DPRA=0;EPP=576.279;EPPR=126.784;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=9433;QR=2053;RO=57;RPL=264;RPP=576.279;RPPR=126.784;RPR=0;RUN=1;SAF=264;SAP=576.279;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:75:10,65:10:370:65:2272:-182.141,0,-11.073 0/1:88:8,80:8:295:80:2886:-233.47,0,-0.411789 0/1:92:20,72:20:720:72:2587:-205.369,0,-37.4287 0/1:67:19,47:19:668:47:1688:-131.956,0,-40.2007 dDocent_Contig_2390 129 . T C 91.1941 . AB=0.263158;ABP=12.2676;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=61;DPB=61;DPRA=1.35714;EPP=13.8677;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=170;QR=1912;RO=56;RPL=0;RPP=13.8677;RPPR=124.613;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=124.613;SRR=56;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:14,5:14:463:5:170:-9.91527,0,-36.2682 0/0:8:8,0:8:279:0:0:0,-2.40824,-25.449 0/0:22:22,0:22:754:0:0:0,-6.62266,-68.1788 0/0:12:12,0:12:416:0:0:0,-3.61236,-37.7727 dDocent_Contig_2391 56 . T C 4264.23 . AB=0.688995;ABP=67.8532;AC=4;AF=0.5;AN=8;AO=144;CIGAR=1X;DP=209;DPB=209;DPRA=0;EPP=315.702;EPPR=144.156;GTI=0;LEN=1;MEANALT=1;MQM=59.7153;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.993056;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5501;QR=2491;RO=65;RPL=144;RPP=315.702;RPPR=144.156;RPR=0;RUN=1;SAF=144;SAP=315.702;SAR=0;SRF=65;SRP=144.156;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:92:12,80:12:462:80:3059:-245.887,0,-14.2359 0/1:50:21,29:21:800:29:1100:-84.2477,0,-57.2711 0/1:29:10,19:10:387:19:722:-56.578,0,-26.4577 0/1:38:22,16:22:842:16:620:-44.7003,0,-64.6635 dDocent_Contig_2392 42 . A G 33.342 . 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AB=0.149425;ABP=95.8844;AC=2;AF=0.25;AN=8;AO=22;CIGAR=1X;DP=306;DPB=306;DPRA=0;EPP=50.7827;EPPR=619.708;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=850;QR=11316;RO=284;RPL=0;RPP=50.7827;RPPR=619.708;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=284;SRP=619.708;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:115:114,1:114:4578:1:25:0,-32.1186,-409.438 0/0:104:96,8:96:3775:8:312:0,-2.86528,-311.322 0/1:60:51,9:51:2035:9:360:-14.7021,0,-165.277 0/1:27:23,4:23:928:4:153:-6.01162,0,-75.6964 dDocent_Contig_2404 15 . T A 1986.13 . AB=0.117647;ABP=391.576;AC=1;AF=0.125;AN=8;AO=36;CIGAR=1X3M1X;DP=359;DPB=359;DPRA=0;EPP=81.1833;EPPR=498.106;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1380;QR=8938;RO=228;RPL=0;RPP=81.1833;RPPR=498.106;RPR=36;RUN=1;SAF=36;SAP=81.1833;SAR=0;SRF=228;SRP=498.106;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:160:108,26,26:108:4242:26,26:1011,1048:-50.6029,0,-341.105,-15.9133,-281.711,-356.963 0|0:53:28,0,25:28:1101:0,25:0,961:-62.9399,-71.3688,-161.954,0,-90.9547,-83.429 0|0:65:30,3,31:30:1183:3,31:110,1185:-71.1531,-71.1894,-167.651,0,-88.3896,-88.0462 0|0:81:62,7,12:62:2412:7,12:259,458:-18.9064,-16.3914,-212.501,0,-177.046,-194.615 dDocent_Contig_2405 23 . G A 2186.8 . AB=0.286667;ABP=121.602;AC=4;AF=0.5;AN=8;AO=86;CIGAR=1X;DP=300;DPB=300;DPRA=0;EPP=189.757;EPPR=467.705;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=0.976636;PAO=0;PQA=0;PQR=0;PRO=0;QA=3475;QR=8641;RO=214;RPL=0;RPP=189.757;RPPR=467.705;RPR=86;RUN=1;SAF=86;SAP=189.757;SAR=0;SRF=214;SRP=467.705;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:78:66,12:66:2659:12:484:-20.4307,0,-215.942 0/1:79:38,41:38:1538:41:1656:-125.48,0,-114.872 0/1:100:72,28:72:2906:28:1136:-72.4165,0,-231.525 0/1:43:38,5:38:1538:5:199:-5.34315,0,-125.712 dDocent_Contig_2408 35 . A T 10335.1 . AB=0.872414;ABP=352.363;AC=5;AF=0.625;AN=8;AO=319;CIGAR=1X;DP=361;DPB=361;DPRA=0;EPP=695.71;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.99373;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=12690;QR=1679;RO=42;RPL=0;RPP=695.71;RPPR=94.2121;RPR=319;RUN=1;SAF=319;SAP=695.71;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:129:15,114:15:603:114:4546:-370.244,0,-15.7744 0/1:88:8,80:8:319:80:3180:-259.787,0,-2.58592 1/1:71:5,66:5:196:66:2624:-218.281,-3.36008,0 0/1:73:14,59:14:561:59:2340:-188.787,0,-28.8572 dDocent_Contig_2409 14 . C A 1708.85 . AB=0.221662;ABP=270.156;AC=2;AF=0.25;AN=8;AO=91;CIGAR=1X;DP=519;DPB=519;DPRA=2.4127;EPP=200.614;EPPR=932.4;GTI=0;LEN=1;MEANALT=1;MQM=41.8791;MQMR=57.8692;NS=4;NUMALT=1;ODDS=0;PAIRED=0.0659341;PAIREDR=0.810748;PAO=0;PQA=0;PQR=0;PRO=0;QA=3669;QR=17024;RO=428;RPL=0;RPP=200.614;RPPR=932.4;RPR=91;RUN=1;SAF=91;SAP=200.614;SAR=0;SRF=428;SRP=932.4;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:262:207,55:207:8273:55:2225:-99.1908,0,-663.665 0/1:135:102,33:102:4022:33:1326:-73.8877,0,-319.843 0/0:63:63,0:63:2508:0:0:0,-18.9649,-224.553 0/0:59:56,3:56:2221:3:118:0,-7.29402,-189.525 dDocent_Contig_2410 33 . C A 15482.1 . AB=0.59408;ABP=39.3744;AC=8;AF=1;AN=8;AO=435;CIGAR=2M1X5M;DP=639;DPB=687;DPRA=0;EPP=947.601;EPPR=79.0118;GTI=0;LEN=1;MEANALT=4.75;MQM=60;MQMR=60;NS=4;NUMALT=5;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=17294;QR=1377;RO=35;RPL=0;RPP=947.601;RPPR=79.0118;RPR=435;RUN=1;SAF=435;SAP=947.601;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:166:8,4,0,0,0,154:8:317:4,0,0,0,154:161,0,0,0,6135:-523.028,-512.167,-537.055,-525.436,-538.259,-551.528,-525.436,-538.259,-551.528,-551.528,-525.436,-538.259,-551.528,-551.528,-551.528,-20.2709,-33.0872,-46.3586,-46.3586,-46.3586,0 1|1:148:1,0,5,0,17,124:1:36:0,5,0,17,124:0,196,0,660,4938:-457.614,-457.915,-460.852,-441.798,-444.735,-443.23,-457.915,-460.852,-444.735,-460.852,-403.689,-406.626,-390.509,-406.626,-401.508,-51.3168,-54.2535,-38.1325,-54.2535,0,-16.9258 1|1:170:11,5,18,26,16,93:11:432:5,18,26,16,93:183,716,1007,620,3689:-347.527,-335.887,-369.911,-291.887,-312.464,-321.998,-268.118,-288.695,-244.695,-295.82,-299.91,-320.487,-276.487,-252.718,-330.622,-47.1918,-67.7704,-23.7675,0,-31.792,-54.7257 1|1:155:15,21,12,16,21,64:15:592:21,12,16,21,64:832,475,614,822,2532:-223.615,-159.648,-202.038,-189.036,-169.266,-234.135,-177.737,-157.967,-187.355,-221.632,-160.544,-140.774,-170.162,-158.863,-202.934,-19.7709,0,-29.3885,-18.0906,-0.896631,-49.2168 dDocent_Contig_2413 116 . T C 4102.78 . AB=0.078125;ABP=200.886;AC=1;AF=0.125;AN=8;AO=10;CIGAR=1X2M1X3M2I6M;DP=583;DPB=619.615;DPRA=0;EPP=24.725;EPPR=693.539;GTI=0;LEN=1;MEANALT=5;MQM=60;MQMR=60;NS=4;NUMALT=5;ODDS=5.55112e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=332;QR=10945;RO=318;RPL=0;RPP=24.725;RPPR=693.539;RPR=10;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=693.539;SRR=318;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:128:71,22,10,21,0,3:71:2466:22,10,21,0,3:771,332,710,0,101:-41.3714,0,-193.868,-35.8878,-173.633,-233.363,-5.19275,-142.938,-178.821,-199.357,-62.7446,-200.491,-236.373,-205.678,-263.231,-54.5609,-192.307,-228.19,-197.495,-255.047,-254.144 0|0:121:80,5,0,20,0,16:80:2750:5,0,20,0,16:177,0,711,0,543:-33.865,-43.5286,-265.348,-57.9474,-266.853,-281.272,0,-208.91,-223.328,-217.308,-57.9474,-266.853,-281.272,-223.328,-281.272,-13.9171,-222.818,-237.236,-179.293,-237.236,-232.42 0|0:157:70,9,0,61,11,6:70:2406:9,0,61,11,6:315,0,2135,391,199:-152.635,-148.078,-340.756,-173.707,-343.465,-369.094,0,-169.757,-195.387,-177.024,-141.843,-311.601,-337.231,-163.522,-333.919,-157.611,-327.368,-352.997,-179.29,-321.133,-351.191 0|0:177:97,2,0,76,1,1:97:3323:2,0,76,1,1:71,0,2662,35,35:-187.396,-210.811,-479.968,-216.596,-480.57,-486.355,0,-263.968,-269.754,-246.875,-213.748,-477.722,-483.507,-266.906,-483.206,-213.748,-477.722,-483.507,-266.906,-480.659,-483.206 dDocent_Contig_2414 21 . T A 19688.8 . AB=0.854902;ABP=281.989;AC=6;AF=0.75;AN=8;AO=598;CIGAR=1X;DP=650;DPB=650;DPRA=0;EPP=1301.55;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=59.7759;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.994983;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=23446;QR=2053;RO=52;RPL=0;RPP=1301.55;RPPR=115.927;RPR=598;RUN=1;SAF=598;SAP=1301.55;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:211:2,209:2:81:209:8267:-731.085,-55.8316,0 1/1:184:13,171:13:523:171:6713:-556.526,-7.97288,0 0/1:115:20,95:20:787:95:3703:-296.982,0,-36.5325 0/1:140:17,123:17:662:123:4763:-386.481,0,-17.7598 dDocent_Contig_2415 99 . N C 273.249 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=9;CIGAR=2X;DP=9;DPB=9;DPRA=0;EPP=22.5536;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=9.4572;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=300;QR=0;RO=0;RPL=9;RPP=22.5536;RPPR=0;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. 1|1:9:0,9:0:0:9:300:-27.3249,-2.70927,0 .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. dDocent_Contig_2417 29 . T C 174.407 . AB=0.163934;ABP=62.8504;AC=1;AF=0.125;AN=8;AO=13;CIGAR=1X;DP=358;DPB=358;DPRA=0.61991;EPP=31.2394;EPPR=752.168;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.3275;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.97971;PAO=0;PQA=0;PQR=0;PRO=0;QA=528;QR=13222;RO=345;RPL=0;RPP=31.2394;RPPR=752.168;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=345;SRP=752.168;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:126:126,0:126:4819:0:0:0,-37.9298,-428.669 0/0:95:95,0:95:3665:0:0:0,-28.5978,-327.887 0/0:76:73,3:73:2783:3:122:0,-11.5058,-238.226 0/1:61:51,10:51:1955:10:406:-18.5376,0,-157.81 dDocent_Contig_2418 106 . N T 127.122 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=5;CIGAR=2X;DP=5;DPB=5;DPRA=0;EPP=13.8677;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=132;QR=0;RO=0;RPL=0;RPP=13.8677;RPPR=0;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:2:0,2:0:0:2:54:-5.12954,-0.60206,0 .:.:.:.:.:.:.:. 1|1:3:0,3:0:0:3:78:-7.27834,-0.90309,0 .:.:.:.:.:.:.:. dDocent_Contig_2419 14 . C T 79.9293 . AB=0.117647;ABP=89.3583;AC=1;AF=0.125;AN=8;AO=12;CIGAR=1X;DP=177;DPB=177;DPRA=1.45455;EPP=29.068;EPPR=361.303;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=471;QR=6601;RO=165;RPL=0;RPP=29.068;RPPR=361.303;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=165;SRP=361.303;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:68:60,8:60:2386:8:321:-8.78696,0,-194.428 0/0:41:40,1:40:1602:1:41:0,-8.24766,-140.319 0/0:35:32,3:32:1296:3:109:0,-0.370322,-106.736 0/0:33:33,0:33:1317:0:0:0,-9.93399,-118.791 dDocent_Contig_2420 11 . G C 66.3294 . AB=0;ABP=0;AC=1;AF=0.125;AN=8;AO=19;CIGAR=2M3X;DP=503;DPB=506.4;DPRA=2.60135;EPP=44.2683;EPPR=1012.74;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.997849;PAO=0;PQA=0;PQR=0;PRO=0;QA=739;QR=15878;RO=465;RPL=0;RPP=44.2683;RPPR=1012.74;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=465;SRP=1012.74;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:236:213,11,11:213:7383:11,11:394,424:0,-32.0124,-628.659,-29.2917,-597.153,-625.962 0|0:149:140,0,8:140:4685:0,8:0,315:0,-42.1442,-421.391,-16.2361,-395.474,-393.066 0|0:74:74,0,0:74:2576:0,0:0,0:0,-22.2762,-232.068,-22.2762,-232.068,-232.068 0|1:44:38,6,0:38:1234:6,0:229,0:-7.72985,0,-98.0855,-19.169,-99.8917,-118.687 dDocent_Contig_2422 27 . C T 76.9006 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=4.60517;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:81:-7.68573,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_2423 1 . N G 67.4638 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=4.60517;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=71;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:71:-6.74206,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_2424 98 . N T 929.275 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=29;CIGAR=1X;DP=29;DPB=29;DPRA=0;EPP=65.983;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=0.965517;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1016;QR=0;RO=0;RPL=29;RPP=65.983;RPPR=0;RPR=0;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:104:-9.70302,-0.90309,0 1/1:11:0,11:0:0:11:382:-34.714,-3.31133,0 1/1:15:0,15:0:0:15:530:-48.0327,-4.51545,0 ./.:.:.:.:.:.:.:. dDocent_Contig_2425 37 . G A 11894.5 . AB=0.72973;ABP=121.737;AC=6;AF=0.75;AN=8;AO=368;CIGAR=1X;DP=452;DPB=452;DPRA=0;EPP=802.112;EPPR=185.414;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=14641;QR=3268;RO=84;RPL=0;RPP=802.112;RPPR=185.414;RPR=368;RUN=1;SAF=368;SAP=802.112;SAR=0;SRF=84;SRP=185.414;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:166:38,128:38:1523:128:5133:-411.857,0,-87.3423 1/1:151:12,139:12:448:139:5496:-453.817,-4.80694,0 0/1:93:32,61:32:1218:61:2422:-190.135,0,-81.8927 1/1:42:2,40:2:79:40:1590:-135.835,-5.14602,0 dDocent_Contig_2426 18 . G A 20191.9 . AB=0.806993;ABP=588.309;AC=7;AF=0.875;AN=8;AO=577;CIGAR=1X3M;DP=715;DPB=715;DPRA=0;EPP=1255.95;EPPR=135.47;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=23046;QR=2437;RO=61;RPL=0;RPP=1255.95;RPPR=135.47;RPR=577;RUN=1;SAF=577;SAP=1255.95;SAR=0;SRF=61;SRP=135.47;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:235:30,0,204:30:1198:0,204:0,8175:-664.419,-673.45,-772.121,0,-98.6608,-37.2507 1|1:220:11,33,176:11:444:33,176:1283,7004:-642.147,-540.046,-566.714,-68.7972,0,-52.4213 1|1:173:20,29,124:20:795:29,124:1154,4923:-428.781,-339.783,-396.505,-29.5668,0,-57.6914 1|1:87:0,14,73:0:0:14,73:556,2944:-288.837,-243.065,-238.851,-46.1694,0,-24.1943 dDocent_Contig_2427 40 . A G 97.9679 . AB=0.171429;ABP=35.8306;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=126;DPB=126;DPRA=1.15385;EPP=16.0391;EPPR=263.587;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=234;QR=4674;RO=120;RPL=0;RPP=16.0391;RPPR=263.587;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=120;SRP=263.587;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:31:31,0:31:1197:0:0:0,-9.33193,-108.003 0/0:36:36,0:36:1373:0:0:0,-10.8371,-123.836 0/1:35:29,6:29:1159:6:234:-10.8937,0,-94.0558 0/0:24:24,0:24:945:0:0:0,-7.22472,-85.3559 dDocent_Contig_2428 182 . A G 6314.83 . AB=0.305128;ABP=131.651;AC=3;AF=0.375;AN=8;AO=119;CIGAR=1X1M1X;DP=390;DPB=390;DPRA=0;EPP=261.416;EPPR=220.158;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4758;QR=3913;RO=100;RPL=119;RPP=261.416;RPPR=220.158;RPR=0;RUN=1;SAF=0;SAP=261.416;SAR=119;SRF=0;SRP=220.158;SRR=100;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:132:21,38,73:21:818:38,73:1526,2823:-284.002,-164.574,-220.36,-58.5317,0,-103.776 1|0:80:19,28,33:19:755:28,33:1110,1321:-132.307,-46.6624,-100.392,-29.2056,0,-81.4311 1|0:121:33,39,49:33:1280:39,49:1567,1969:-176.297,-57.1023,-150.512,-23.9866,0,-114.385 0|0:57:27,14,16:27:1060:14,16:555,632:-43.8674,-6.31386,-89.275,0,-41.4925,-82.358 dDocent_Contig_2429 32 . G A 81.0706 . AB=0.126984;ABP=79.1497;AC=1;AF=0.125;AN=8;AO=10;CIGAR=1X;DP=210;DPB=210;DPRA=0.75;EPP=24.725;EPPR=437.305;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=383;QR=7990;RO=200;RPL=0;RPP=24.725;RPPR=437.305;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=200;SRP=437.305;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:68:68,0:68:2710:0:0:0,-20.47,-244.007 0/0:52:52,0:52:2094:0:0:0,-15.6536,-188.64 0/1:63:55,8:55:2189:8:309:-9.20363,0,-178.218 0/0:27:25,2:25:997:2:74:0,-1.10204,-83.001 dDocent_Contig_2430 164 . G T 95.4687 . AB=0.185185;ABP=26.2531;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=127;DPB=127;DPRA=0.5875;EPP=16.0391;EPPR=248.674;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=241;QR=4781;RO=121;RPL=6;RPP=16.0391;RPPR=248.674;RPR=0;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=265.758;SRR=121;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:22,5:22:873:5:201:-10.3427,0,-70.754 0/0:38:38,0:38:1522:0:0:0,-11.4391,-137.216 0/0:42:42,0:42:1660:0:0:0,-12.6433,-149.628 0/0:20:19,1:19:726:1:40:0,-2.02492,-61.6506 dDocent_Contig_2431 9 . C G 2427.05 . AB=0.290323;ABP=156.905;AC=4;AF=0.5;AN=8;AO=117;CIGAR=1X;DP=403;DPB=403;DPRA=0;EPP=257.073;EPPR=624.051;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.991453;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4087;QR=9897;RO=286;RPL=0;RPP=257.073;RPPR=624.051;RPR=117;RUN=1;SAF=117;SAP=257.073;SAR=0;SRF=286;SRP=624.051;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:148:126,22:126:4288:22:773:-25.3275,0,-341.489 0/1:94:58,36:58:2075:36:1202:-80.158,0,-158.69 0/1:84:61,23:61:2060:23:800:-47.0215,0,-160.346 0/1:77:41,36:41:1474:36:1312:-95.1881,0,-109.758 dDocent_Contig_2432 1 . N G 76.9006 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=4.60517;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:81:-7.68573,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_2433 9 . G T 100.807 . AB=0.136364;ABP=78.8144;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X;DP=201;DPB=201;DPRA=1.46667;EPP=22.5536;EPPR=419.933;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.994792;PAO=0;PQA=0;PQR=0;PRO=0;QA=341;QR=6689;RO=192;RPL=0;RPP=22.5536;RPPR=419.933;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=192;SRP=419.933;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:41:41,0:41:1355:0:0:0,-12.3422,-122.217 0/0:40:40,0:40:1389:0:0:0,-12.0412,-125.293 0/0:54:54,0:54:1984:0:0:0,-16.2556,-178.808 0/1:66:57,9:57:1961:9:341:-11.1777,0,-156.866 dDocent_Contig_2434 94 . A C 2016.49 . AB=0.696629;ABP=32.8985;AC=5;AF=0.625;AN=8;AO=76;CIGAR=1X;DP=103;DPB=103;DPRA=0;EPP=168.042;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2564;QR=934;RO=27;RPL=76;RPP=168.042;RPPR=61.6401;RPR=0;RUN=1;SAF=76;SAP=168.042;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:44:13,31:13:452:31:1050:-81.5613,0,-27.767 1/1:14:0,14:0:0:14:474:-42.9845,-4.21442,0 0/1:23:8,15:8:275:15:503:-38.6669,0,-18.1613 0/1:22:6,16:6:207:16:537:-42.0277,0,-12.3454 dDocent_Contig_2436 11 . G C 102.204 . AB=0.333333;ABP=6.62942;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=51;DPB=51;DPRA=1.25;EPP=13.8677;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=41.6;MQMR=60;NS=4;NUMALT=1;ODDS=8.67362e-19;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=178;QR=1694;RO=46;RPL=0;RPP=13.8677;RPPR=102.898;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:8:8,0:8:295:0:0:0,-2.40824,-26.9 0/0:9:9,0:9:329:0:0:0,-2.70927,-29.9491 0/1:15:10,5:10:366:5:178:-11.3173,0,-28.7612 0/0:19:19,0:19:704:0:0:0,-5.71957,-63.6684 dDocent_Contig_2437 40 . T G 24701.8 . AB=0.785965;ABP=205.445;AC=6;AF=0.75;AN=8;AO=747;CIGAR=1X;DP=844;DPB=844;DPRA=0;EPP=1625.1;EPPR=211.472;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=29314;QR=2350;RO=96;RPL=0;RPP=1625.1;RPPR=211.472;RPR=747;RUN=1;SAF=747;SAP=1625.1;SAR=0;SRF=96;SRP=211.472;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:313:16,296:16:423:296:11663:-1010.56,-55.8911,0 1/1:246:19,227:19:447:227:8945:-764.097,-33.5923,0 0/1:168:32,136:32:776:136:5295:-425.872,0,-19.4989 0/1:117:29,88:29:704:88:3411:-271.847,0,-28.3745 dDocent_Contig_2438 8 . A T 1739.03 . AB=0.30605;ABP=94.8226;AC=4;AF=0.5;AN=8;AO=86;CIGAR=1X;DP=281;DPB=281;DPRA=0;EPP=189.757;EPPR=426.447;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2914;QR=6724;RO=195;RPL=0;RPP=189.757;RPPR=426.447;RPR=86;RUN=1;SAF=86;SAP=189.757;SAR=0;SRF=195;SRP=426.447;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:106:75,31:75:2640:31:1025:-60.624,0,-205.892 0/1:91:71,20:71:2416:20:692:-35.196,0,-190.265 0/1:54:31,23:31:1060:23:768:-53.1589,0,-79.4341 0/1:30:18,12:18:608:12:429:-29.9141,0,-45.996 dDocent_Contig_2439 98 . N G 158.669 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=6;CIGAR=1X;DP=6;DPB=6;DPRA=0;EPP=16.0391;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=159;QR=0;RO=0;RPL=6;RPP=16.0391;RPPR=0;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1:0,1:0:0:1:7:-0.699998,-0.30103,0 1/1:1:0,1:0:0:1:20:-1.99996,-0.30103,0 1/1:2:0,2:0:0:2:68:-6.45788,-0.60206,0 1/1:2:0,2:0:0:2:64:-6.07866,-0.60206,0 dDocent_Contig_2440 142 . C T 1264.87 . AB=0.317204;ABP=56.9936;AC=4;AF=0.5;AN=8;AO=59;CIGAR=1X;DP=186;DPB=186;DPRA=0;EPP=131.127;EPPR=276.616;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.952381;PAO=0;PQA=0;PQR=0;PRO=0;QA=2066;QR=4307;RO=126;RPL=0;RPP=131.127;RPPR=276.616;RPR=59;RUN=1;SAF=0;SAP=131.127;SAR=59;SRF=0;SRP=276.616;SRR=126;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:83:73,10:73:2485:10:329:-4.94077,0,-198.925 0/1:41:21,19:21:719:19:673:-48.7722,0,-52.9053 0/1:34:18,16:18:616:16:563:-40.7655,0,-45.527 0/1:28:14,14:14:487:14:501:-36.9981,0,-35.7324 dDocent_Contig_2441 21 . T G 3097.8 . AB=0.285412;ABP=192.195;AC=4;AF=0.5;AN=8;AO=135;CIGAR=1X;DP=473;DPB=473;DPRA=0;EPP=296.159;EPPR=734.797;GTI=0;LEN=1;MEANALT=1.25;MQM=59.9704;MQMR=59.9169;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.994065;PAO=0;PQA=0;PQR=0;PRO=0;QA=5068;QR=12325;RO=337;RPL=0;RPP=296.159;RPPR=734.797;RPR=135;RUN=1;SAF=135;SAP=296.159;SAR=0;SRF=337;SRP=734.797;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:132:72,60:72:2589:60:2261:-163.965,0,-193.494 0/1:134:107,27:107:3922:27:1013:-51.1346,0,-312.671 0/1:133:109,24:109:4006:24:917:-42.8066,0,-320.641 0/1:74:49,24:49:1808:24:877:-56.8636,0,-140.613 dDocent_Contig_2442 22 . A T 5875.29 . AB=0.521164;ABP=4.48093;AC=4;AF=0.5;AN=8;AO=197;CIGAR=1X;DP=378;DPB=378;DPRA=0;EPP=430.79;EPPR=396.047;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7839;QR=7228;RO=181;RPL=0;RPP=430.79;RPPR=396.047;RPR=197;RUN=1;SAF=197;SAP=430.79;SAR=0;SRF=181;SRP=396.047;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:108:26,82:26:1040:82:3245:-259.61,0,-61.3797 0/1:127:84,43:84:3376:43:1725:-117.242,0,-265.654 0/1:73:36,37:36:1442:37:1471:-110.663,0,-108.053 0/1:70:35,35:35:1370:35:1398:-105.004,0,-102.491 dDocent_Contig_2443 30 . G T 333.863 . AB=0.18;ABP=91.9538;AC=1;AF=0.125;AN=8;AO=20;CIGAR=1X;DP=273;DPB=273;DPRA=0.93617;EPP=46.4397;EPPR=550.221;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=795;QR=9889;RO=252;RPL=0;RPP=46.4397;RPPR=550.221;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=252;SRP=550.221;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:97:96,0:96:3761:0:0:0,-28.8989,-338.444 0/1:100:82,18:82:3208:18:714:-34.4832,0,-258.705 0/0:44:44,0:44:1714:0:0:0,-13.2453,-154.494 0/0:32:30,2:30:1206:2:81:0,-1.94723,-101.13 dDocent_Contig_2444 23 . C A 3889.12 . AB=0.782609;ABP=50.8771;AC=6;AF=0.75;AN=8;AO=114;CIGAR=1X;DP=129;DPB=129;DPRA=0;EPP=250.558;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4564;QR=603;RO=15;RPL=0;RPP=250.558;RPPR=35.5824;RPR=114;RUN=1;SAF=114;SAP=250.558;SAR=0;SRF=15;SRP=35.5824;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:34:8,26:8:322:26:1050:-84.5536,0,-19.1133 0/1:35:7,28:7:281:28:1130:-91.4453,0,-15.1261 1/1:44:0,44:0:0:44:1746:-157.355,-13.2453,0 1/1:16:0,16:0:0:16:638:-57.7521,-4.81648,0 dDocent_Contig_2445 44 . T C 49.2304 . AB=0.113208;ABP=71.8828;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=196;DPB=196;DPRA=1.11189;EPP=16.0391;EPPR=415.59;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=240;QR=7517;RO=190;RPL=0;RPP=16.0391;RPPR=415.59;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=190;SRP=415.59;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:49:49,0:49:1934:0:0:0,-14.7505,-174.264 0/1:53:47,6:47:1872:6:240:-6.01995,0,-152.733 0/0:49:49,0:49:1928:0:0:0,-14.7505,-173.723 0/0:45:45,0:45:1783:0:0:0,-13.5463,-160.687 dDocent_Contig_2446 9 . G T 35.2837 . AB=0.128205;ABP=49.8362;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=178;DPB=178;DPRA=0.841727;EPP=13.8677;EPPR=361.504;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=0.907514;PAO=0;PQA=0;PQR=0;PRO=0;QA=178;QR=5881;RO=173;RPL=0;RPP=13.8677;RPPR=378.675;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=171;SRP=361.504;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:27:27,0:27:914:0:0:0,-8.12781,-82.5594 0/0:48:48,0:48:1631:0:0:0,-14.4494,-147.049 0/0:64:64,0:64:2181:0:0:0,-19.2659,-196.525 0/1:39:34,5:34:1155:5:178:-4.62515,0,-92.491 dDocent_Contig_2447 7 . G T 3515.54 . AB=0.0462963;ABP=196.11;AC=0;AF=0;AN=8;AO=5;CIGAR=1X4M;DP=179;DPB=179.2;DPRA=1.58824;EPP=13.8677;EPPR=89.8692;GTI=0;LEN=1;MEANALT=4.5;MQM=60;MQMR=60;NS=4;NUMALT=4;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=111;QR=1337;RO=40;RPL=0;RPP=13.8677;RPPR=89.8692;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:37:7,3,0,0,27:7:214:3,0,0,27:93,0,0,1017:-81.2732,-75.9216,-92.1496,-83.3804,-93.0527,-100.514,-83.3804,-93.0527,-100.514,-100.514,0,-9.67582,-17.1426,-17.1426,-9.01475 0|0:39:20,1,4,0,13:20:687:1,4,0,13:31,72,0,498:-34.9783,-38.5111,-93.999,-35.764,-89.0454,-90.3285,-40.9989,-94.3001,-91.5326,-96.7879,0,-53.4075,-50.6465,-55.896,-51.9826 0|0:69:12,2,1,5,46:12:401:2,1,5,46:60,39,155,1737:-138.761,-137.579,-169.428,-139.168,-166.824,-171.318,-129.942,-157.597,-159.186,-160.887,0,-27.6621,-29.2476,-20.0257,-18.6085 0|0:34:1,2,0,0,30:1:35:2,0,0,30:61,0,0,1148:-100.133,-95.5512,-97.7959,-100.434,-98.3979,-103.281,-100.434,-98.3979,-103.281,-103.281,-6.17402,-4.16136,-9.0309,-9.0309,0 dDocent_Contig_2448 23 . C A 11130.9 . AB=0.550193;ABP=14.3456;AC=5;AF=0.625;AN=8;AO=285;CIGAR=1X4M;DP=518;DPB=518;DPRA=0;EPP=621.88;EPPR=235.358;GTI=0;LEN=1;MEANALT=2.25;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.989474;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=11340;QR=4241;RO=107;RPL=0;RPP=621.88;RPPR=235.358;RPR=285;RUN=1;SAF=285;SAP=621.88;SAR=0;SRF=107;SRP=235.358;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:156:21,46,89:21:830:46,89:1807,3534:-364.903,-222.611,-277.065,-80.3116,0,-121.822 0|1:115:35,61,19:35:1382:61,19:2407,750:-187.505,0,-95.3484,-136.33,-52.0005,-244.322 0|1:157:34,9,113:34:1354:9,113:362,4511:-361.267,-341.668,-450.45,0,-81.6536,-77.4718 0|1:90:17,9,64:17:675:9,64:361,2545:-204.405,-179.778,-232.637,0,-25.8204,-36.3002 dDocent_Contig_2449 54 . C G 326.014 . AB=0.276923;ABP=31.1058;AC=4;AF=0.5;AN=8;AO=18;CIGAR=1X;DP=65;DPB=65;DPRA=0;EPP=42.0968;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=620;QR=1614;RO=47;RPL=18;RPP=42.0968;RPPR=105.07;RPR=0;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:8,5:8:276:5:171:-11.8132,0,-21.2625 0/1:21:17,4:17:578:4:136:-6.25406,0,-46.0189 0/1:12:9,3:9:311:3:105:-6.1838,0,-24.7129 0/1:19:13,6:13:449:6:208:-13.34,0,-35.021 dDocent_Contig_2450 209 . N G 157.735 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=163;QR=0;RO=0;RPL=4;RPP=11.6962;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:122:-11.3725,-0.90309,0 ./.:.:.:.:.:.:.:. 1/1:1:0,1:0:0:1:41:-4.09457,-0.30103,0 dDocent_Contig_2451 113 . C A 4493.81 . AB=0.0419162;ABP=307.394;AC=0;AF=0;AN=8;AO=7;CIGAR=2X;DP=286;DPB=286;DPRA=0;EPP=18.2106;EPPR=209.3;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=231;QR=2478;RO=95;RPL=0;RPP=18.2106;RPPR=209.3;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=209.3;SRR=95;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:84:39,6,39:39:1005:6,39:196,1247:-88.7054,-84.6157,-161.478,0,-62.8019,-66.8999 0|0:62:8,0,54:8:221:0,54:0,1742:-138.387,-140.795,-158.268,0,-17.7549,-1.49924 0|0:57:28,0,29:28:706:0,29:0,934:-67.1966,-75.6254,-130.697,0,-55.3577,-46.6278 0|0:83:20,1,62:20:546:1,62:35,2053:-160.003,-163.176,-205.974,0,-40.1889,-24.3764 dDocent_Contig_2452 172 . C T 449.637 . AB=0.12987;ABP=369.51;AC=2;AF=0.25;AN=8;AO=55;CIGAR=1X;DP=677;DPB=677;DPRA=0.835924;EPP=122.441;EPPR=1340.65;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.998387;PAO=0;PQA=0;PQR=0;PRO=0;QA=2120;QR=24324;RO=620;RPL=55;RPP=122.441;RPPR=1349.32;RPR=0;RUN=1;SAF=0;SAP=122.441;SAR=55;SRF=1;SRP=1340.65;SRR=619;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:193:193,0:193:7557:0:0:0,-58.0988,-679.774 0/0:176:161,15:161:6322:15:574:0,-0.999241,-516.77 0/1:141:119,21:119:4659:21:790:-29.1728,0,-377.028 0/1:167:147,19:147:5786:19:756:-17.9842,0,-470.176 dDocent_Contig_2453 40 . A T 222.355 . AB=0.210526;ABP=44.4969;AC=2;AF=0.25;AN=8;AO=13;CIGAR=1X;DP=93;DPB=93;DPRA=1.38889;EPP=31.2394;EPPR=176.728;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=489;QR=3081;RO=80;RPL=0;RPP=31.2394;RPPR=176.728;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=80;SRP=176.728;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:38:31,7:31:1203:7:258:-12.1338,0,-97.117 0/0:18:17,1:17:654:1:35:0,-1.91991,-55.6941 0/0:18:18,0:18:708:0:0:0,-5.41854,-64.0476 0/1:19:14,5:14:516:5:196:-12.2955,0,-41.0488 dDocent_Contig_2454 18 . C G 4398.29 . AB=0.192937;ABP=953.837;AC=4;AF=0.5;AN=8;AO=224;CIGAR=1X;DP=1161;DPB=1161;DPRA=0;EPP=489.42;EPPR=2035.51;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=8816;QR=37399;RO=936;RPL=0;RPP=489.42;RPPR=2035.51;RPR=224;RUN=1;SAF=224;SAP=489.42;SAR=0;SRF=936;SRP=2035.51;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:366:281,85:281:11231:85:3368:-192.989,0,-899.837 0/1:347:272,75:272:10872:75:2946:-160.783,0,-873.266 0/1:257:211,45:211:8454:45:1769:-82.2647,0,-683.203 0/1:191:172,19:172:6842:19:733:-8.78194,0,-557.959 dDocent_Contig_2455 98 . N A 1078.52 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=35;CIGAR=2X;DP=35;DPB=35;DPRA=0;EPP=79.0118;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=4;NUMALT=1;ODDS=1.35525e-20;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1177;QR=0;RO=0;RPL=35;RPP=79.0118;RPPR=0;RPR=0;RUN=1;SAF=35;SAP=79.0118;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:7:0,7:0:0:7:244:-22.3,-2.10721,0 1|1:21:0,21:0:0:21:701:-63.4029,-6.32163,0 1|1:2:0,2:0:0:2:70:-6.6474,-0.60206,0 1|1:5:0,5:0:0:5:162:-14.8988,-1.50515,0 dDocent_Contig_2456 12 . C T 375.732 . AB=0.195876;ABP=80.9371;AC=3;AF=0.375;AN=8;AO=19;CIGAR=1X;DP=173;DPB=173;DPRA=0.425439;EPP=44.2683;EPPR=337.417;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=769;QR=6083;RO=154;RPL=0;RPP=44.2683;RPPR=337.417;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=154;SRP=337.417;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:76:76,0:76:2999:0:0:0,-22.8783,-270.012 0/1:40:35,5:35:1387:5:201:-6.42932,0,-113.048 0/1:38:26,12:26:1024:12:486:-32.6525,0,-81.0127 0/1:19:17,2:17:673:2:82:-2.06011,0,-55.1793 dDocent_Contig_2457 14 . T G 925.977 . AB=0.0322581;ABP=179.74;AC=0;AF=0;AN=8;AO=6;CIGAR=2M1X9M;DP=266;DPB=266.667;DPRA=0;EPP=16.0391;EPPR=419.933;GTI=0;LEN=1;MEANALT=3.33333;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=194;QR=7468;RO=192;RPL=0;RPP=16.0391;RPPR=419.933;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=192;SRP=419.933;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:93:49,25,13,3:49:1915:25,13,3:880,472,84:-56.8825,0,-149.942,-33.0891,-118.933,-186.642,-64.9853,-150.819,-183.906,-221.539 0|0:89:66,2,19,0:66:2577:2,19,0:76,706,0:-37.909,-51.5434,-262.804,0,-205.63,-206.143,-57.777,-263.406,-211.863,-269.639 0|0:50:45,1,3,1:45:1719:1,3,1:36,101,39:0,-10.6069,-151.365,-5.38797,-143.488,-145.522,-10.331,-148.46,-143.219,-151.096 0|0:34:32,0,0,2:32:1257:0,0,2:0,0,71:0,-9.63296,-113.058,-9.63296,-113.058,-113.058,-3.49312,-107.275,-107.275,-106.673 dDocent_Contig_2458 136 . A G 37.8526 . AB=0.176471;ABP=18.4661;AC=2;AF=0.25;AN=8;AO=3;CIGAR=1X1M1X;DP=83;DPB=83;DPRA=0.257576;EPP=9.52472;EPPR=176.728;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=114;QR=3100;RO=80;RPL=0;RPP=9.52472;RPPR=176.728;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=176.728;SRR=80;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:31:31,0:31:1206:0:0:0,-9.33193,-108.819 0|0:35:35,0:35:1342:0:0:0,-10.536,-121.051 0|1:9:7,2:7:276:2:75:-4.41032,0,-22.4987 0|1:8:7,1:7:276:1:39:-1.48832,0,-22.7983 dDocent_Contig_2459 90 . T C 3228.62 . AB=0.332599;ABP=113.516;AC=4;AF=0.5;AN=8;AO=151;CIGAR=1X;DP=454;DPB=454;DPRA=0;EPP=330.903;EPPR=660.966;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.741722;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5148;QR=10497;RO=303;RPL=151;RPP=330.903;RPPR=660.966;RPR=0;RUN=1;SAF=151;SAP=330.903;SAR=0;SRF=303;SRP=660.966;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:141:94,47:94:3261:47:1599:-101.754,0,-251.268 0/1:156:100,56:100:3468:56:1922:-126.3,0,-265.375 0/1:97:66,31:66:2278:31:1035:-64.2514,0,-176.08 0/1:60:43,17:43:1490:17:592:-35.5461,0,-116.327 dDocent_Contig_2460 10 . C T 1043.23 . AB=0.25;ABP=109.412;AC=4;AF=0.5;AN=8;AO=49;CIGAR=1X;DP=196;DPB=196;DPRA=0;EPP=109.412;EPPR=313.59;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.986395;PAO=0;PQA=0;PQR=0;PRO=0;QA=1855;QR=5539;RO=147;RPL=0;RPP=109.412;RPPR=322.217;RPR=49;RUN=1;SAF=49;SAP=109.412;SAR=0;SRF=146;SRP=313.59;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:40:27,13:27:1034:13:513:-34.4766,0,-81.3173 0/1:55:45,10:45:1647:10:356:-15.8148,0,-131.906 0/1:49:40,9:40:1502:9:350:-17.1068,0,-120.68 0/1:52:35,17:35:1356:17:636:-41.9148,0,-106.656 dDocent_Contig_2461 23 . A C 2369.05 . AB=0.728155;ABP=49.581;AC=4;AF=0.5;AN=8;AO=75;CIGAR=1X;DP=103;DPB=103;DPRA=0;EPP=165.871;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3018;QR=1097;RO=28;RPL=0;RPP=165.871;RPPR=63.8115;RPR=75;RUN=1;SAF=75;SAP=165.871;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:37:5,32:5:200:32:1299:-106.031,0,-7.24031 0/1:22:13,9:13:490:9:364:-26.5017,0,-37.8039 0/1:25:3,22:3:120:22:878:-71.804,0,-3.66156 0/1:19:7,12:7:287:12:477:-37.5567,0,-20.4857 dDocent_Contig_2462 31 . T C 200.166 . AB=0.243243;ABP=24.1968;AC=2;AF=0.25;AN=8;AO=11;CIGAR=1X;DP=108;DPB=108;DPRA=0.827957;EPP=26.8965;EPPR=213.643;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=444;QR=3836;RO=97;RPL=0;RPP=26.8965;RPPR=213.643;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=97;SRP=213.643;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:8:5,3:5:205:3:122:-8.96425,0,-16.4268 0/0:31:31,0:31:1234:0:0:0,-9.33193,-111.336 0/0:40:38,2:38:1487:2:82:0,-4.26152,-126.307 0/1:29:23,6:23:910:6:240:-13.2462,0,-73.4781 dDocent_Contig_2463 13 . C T 3031.12 . AB=0.81746;ABP=113.307;AC=4;AF=0.5;AN=8;AO=103;CIGAR=1X2M1X;DP=126;DPB=126;DPRA=0;EPP=226.672;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3831;QR=862;RO=22;RPL=0;RPP=226.672;RPPR=50.7827;RPR=103;RUN=1;SAF=103;SAP=226.672;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:40:6,34:6:234:34:1276:-103.094,0,-9.38758 0|1:26:3,23:3:121:23:831:-67.2741,0,-3.45342 0|1:18:2,15:2:73:15:574:-46.4851,0,-1.42373 0|1:42:11,31:11:434:31:1150:-91.1563,0,-26.7719 dDocent_Contig_2464 1 . N G 75.9611 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=4.60517;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=80;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:80:-7.59179,-0.60206,0 dDocent_Contig_2465 21 . G C 1794.16 . AB=0.17301;ABP=539.807;AC=4;AF=0.5;AN=8;AO=100;CIGAR=1X;DP=578;DPB=578;DPRA=0;EPP=220.158;EPPR=1040.97;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.96;PAIREDR=0.997908;PAO=0;PQA=0;PQR=0;PRO=0;QA=3969;QR=18816;RO=478;RPL=0;RPP=220.158;RPPR=1040.97;RPR=100;RUN=1;SAF=100;SAP=220.158;SAR=0;SRF=478;SRP=1040.97;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:175:148,27:148:5853:27:1057:-42.7392,0,-473.894 0/1:158:133,25:133:5198:25:988:-41.6559,0,-420.142 0/1:126:111,15:111:4381:15:608:-17.1285,0,-356.331 0/1:119:86,33:86:3384:33:1316:-82.8826,0,-268.804 dDocent_Contig_2466 117 . G T 502.309 . AB=0.645161;ABP=8.68415;AC=3;AF=0.375;AN=8;AO=20;CIGAR=1X;DP=54;DPB=54;DPRA=0.449275;EPP=46.4397;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=684;QR=1122;RO=34;RPL=0;RPP=46.4397;RPPR=76.8404;RPR=20;RUN=1;SAF=0;SAP=46.4397;SAR=20;SRF=0;SRP=76.8404;SRR=34;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:23:23,0:23:770:0:0:0,-6.92369,-69.6139 0/1:18:2,16:2:66:16:547:-44.1367,0,-0.849816 0/1:10:8,2:8:253:2:68:-3.44763,0,-20.07 0/1:3:1,2:1:33:2:69:-5.64957,0,-2.39604 dDocent_Contig_2467 132 . C T 123.546 . AB=0.169231;ABP=64.7803;AC=2;AF=0.25;AN=8;AO=11;CIGAR=1X;DP=89;DPB=89;DPRA=2.70833;EPP=26.8965;EPPR=172.385;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=360;QR=2469;RO=78;RPL=0;RPP=26.8965;RPPR=172.385;RPR=11;RUN=1;SAF=0;SAP=26.8965;SAR=11;SRF=0;SRP=172.385;SRR=78;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:50:45,5:45:1441:5:164:-0.0324527,0,-114.928 0/1:15:9,6:9:286:6:196:-13.4468,0,-21.5365 0/0:17:17,0:17:529:0:0:0,-5.11751,-47.91 0/0:7:7,0:7:213:0:0:0,-2.10721,-19.4702 dDocent_Contig_2468 55 . C A 17159.6 . AB=0.0909091;ABP=162.91;AC=1;AF=0.125;AN=8;AO=10;CIGAR=1X3M1X;DP=521;DPB=521;DPRA=0.80292;EPP=24.725;EPPR=31.2394;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=398;QR=508;RO=13;RPL=10;RPP=24.725;RPPR=31.2394;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=13;SRP=31.2394;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:167:0,0,165:0:0:0,165:0,6543:-588.296,-588.296,-588.296,-49.67,-49.67,0 0|0:143:0,0,142:0:0:0,142:0,5640:-506.997,-506.997,-506.997,-42.7463,-42.7463,0 0|0:101:6,0,95:6:227:0,95:0,3767:-318.26,-320.066,-338.671,-9.61382,-28.5979,0 1|0:110:7,10,92:7:281:10,92:398,3597:-303.207,-272.542,-292.687,-9.61556,0,-5.07873 dDocent_Contig_2469 148 . G A 8174.48 . AB=0.541502;ABP=10.5804;AC=4;AF=0.5;AN=8;AO=274;CIGAR=1X;DP=506;DPB=506;DPRA=0;EPP=597.994;EPPR=504.62;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=10824;QR=9258;RO=231;RPL=0;RPP=597.994;RPPR=504.62;RPR=274;RUN=1;SAF=0;SAP=597.994;SAR=274;SRF=0;SRP=504.62;SRR=231;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:179:101,78:101:4078:78:3127:-227.622,0,-313.089 0/1:138:43,95:43:1740:95:3714:-292.742,0,-115.272 0/1:109:57,51:57:2269:51:1998:-147.314,0,-171.674 0/1:80:30,50:30:1171:50:1985:-154.76,0,-81.5748 dDocent_Contig_2470 44 . A T 374.617 . AB=0.220779;ABP=55.1538;AC=2;AF=0.25;AN=8;AO=18;CIGAR=1X;DP=145;DPB=145;DPRA=1.17708;EPP=42.0968;EPPR=278.787;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=731;QR=5013;RO=127;RPL=0;RPP=42.0968;RPPR=278.787;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=127;SRP=278.787;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:32:22,10:22:885:10:404:-27.0871,0,-70.3249 0/1:45:38,7:38:1488:7:286:-12.5685,0,-120.625 0/0:36:35,1:35:1403:1:41:0,-6.74251,-122.43 0/0:32:32,0:32:1237:0:0:0,-9.63296,-111.597 dDocent_Contig_2471 105 . N A 132.223 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=4;CIGAR=3X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=143;QR=0;RO=0;RPL=0;RPP=11.6962;RPPR=0;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. 1|1:4:0,4:0:0:4:143:-13.2212,-1.20412,0 dDocent_Contig_2472 24 . T A 7189.48 . AB=0.491443;ABP=3.27045;AC=6;AF=0.75;AN=8;AO=201;CIGAR=1X3M;DP=409;DPB=409;DPRA=0;EPP=439.476;EPPR=235.358;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.925234;PAO=0;PQA=0;PQR=0;PRO=0;QA=7885;QR=4109;RO=107;RPL=0;RPP=439.476;RPPR=235.358;RPR=201;RUN=1;SAF=201;SAP=439.476;SAR=0;SRF=107;SRP=235.358;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:131:22,37,71:22:848:37,71:1434,2789:-270.918,-159.743,-218.232,-48.1721,0,-96.4265 0|1:88:25,10,52:25:949:10,52:395,2058:-161.865,-136.887,-211.687,0,-45.312,-62.169 1|1:93:16,35,42:16:608:35,42:1334,1610:-186.856,-82.2567,-121.574,-59.5634,0,-96.7744 0|1:97:44,17,36:44:1704:17,36:667,1428:-104.298,-62.6928,-197.547,0,-85.1192,-129.136 dDocent_Contig_2473 27 . C T 7321.64 . AB=0.68314;ABP=103.226;AC=4;AF=0.5;AN=8;AO=235;CIGAR=1X;DP=344;DPB=344;DPRA=0;EPP=513.306;EPPR=239.701;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=9334;QR=4309;RO=109;RPL=0;RPP=513.306;RPPR=239.701;RPR=235;RUN=1;SAF=235;SAP=513.306;SAR=0;SRF=109;SRP=239.701;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:95:26,69:26:1003:69:2751:-219.114,0,-61.9618 0/1:106:33,73:33:1321:73:2904:-229.557,0,-87.2416 0/1:87:35,52:35:1403:52:2080:-161.197,0,-100.334 0/1:56:15,41:15:582:41:1599:-127.286,0,-35.8505 dDocent_Contig_2474 155 . T G 27688.4 . AB=0.85941;ABP=497.815;AC=6;AF=0.75;AN=8;AO=805;CIGAR=1X;DP=868;DPB=868;DPRA=0;EPP=1742.37;EPPR=139.813;GTI=0;LEN=1;MEANALT=1;MQM=59.9913;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.877019;PAIREDR=0.952381;PAO=0;PQA=0;PQR=0;PRO=0;QA=32331;QR=2542;RO=63;RPL=805;RPP=1751.05;RPPR=139.813;RPR=0;RUN=1;SAF=1;SAP=1742.37;SAR=804;SRF=0;SRP=139.813;SRR=63;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:196:38,158:38:1532:158:6403:-516.962,0,-79.1161 1/1:166:1,165:1:41:165:6625:-591.844,-45.8764,0 1/1:261:0,261:0:0:261:10393:-934.666,-78.5688,0 0/1:245:24,221:24:969:221:8910:-727.563,0,-13.7565 dDocent_Contig_2475 9 . C A 55.2097 . AB=0.137931;ABP=69.053;AC=1;AF=0.125;AN=8;AO=32;CIGAR=1X;DP=620;DPB=620;DPRA=0;EPP=72.4974;EPPR=1279.84;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.981293;PAO=0;PQA=0;PQR=0;PRO=0;QA=1107;QR=20620;RO=588;RPL=0;RPP=72.4974;RPPR=1279.84;RPR=32;RUN=1;SAF=32;SAP=72.4974;SAR=0;SRF=588;SRP=1279.84;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:238:223,15:223:7820:15:500:0,-26.3341,-658.394 0/0:212:205,7:205:7207:7:269:0,-39.2437,-623.992 0/0:112:110,2:110:3919:2:74:0,-26.6895,-345.815 0/1:58:50,8:50:1674:8:264:-6.61788,0,-133.446 dDocent_Contig_2476 12 . C T 567.74 . AB=0.179245;ABP=192.461;AC=2;AF=0.25;AN=8;AO=38;CIGAR=1X;DP=371;DPB=371;DPRA=1.33333;EPP=85.5263;EPPR=726.111;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.996997;PAO=0;PQA=0;PQR=0;PRO=0;QA=1357;QR=13068;RO=333;RPL=0;RPP=85.5263;RPPR=726.111;RPR=38;RUN=1;SAF=38;SAP=85.5263;SAR=0;SRF=333;SRP=726.111;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:70:70,0:70:2764:0:0:0,-21.0721,-248.892 0/1:123:95,28:95:3750:28:989:-52.2916,0,-300.505 0/1:89:79,10:79:3030:10:368:-6.67614,0,-246.014 0/0:89:89,0:89:3524:0:0:0,-26.7917,-317.213 dDocent_Contig_2477 59 . C T 52.8733 . AB=0.113208;ABP=71.8828;AC=1;AF=0.125;AN=8;AO=8;CIGAR=2X;DP=215;DPB=215;DPRA=0.791667;EPP=20.3821;EPPR=448.162;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.990244;PAO=0;PQA=0;PQR=0;PRO=0;QA=325;QR=7941;RO=205;RPL=8;RPP=20.3821;RPPR=448.162;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=205;SRP=448.162;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:78:77,0:77:3014:0:0:0,-23.1793,-271.045 0|0:42:40,2:40:1578:2:81:0,-4.95753,-134.58 0|1:53:47,6:47:1806:6:244:-6.38424,0,-146.813 0|0:42:41,0:41:1543:0:0:0,-12.3422,-139.038 dDocent_Contig_2479 119 . G A 7025.25 . AB=0.848485;ABP=72.629;AC=7;AF=0.875;AN=8;AO=235;CIGAR=1X;DP=256;DPB=256;DPRA=0;EPP=513.306;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=8387;QR=678;RO=19;RPL=0;RPP=513.306;RPPR=44.2683;RPR=235;RUN=1;SAF=0;SAP=513.306;SAR=235;SRF=0;SRP=44.2683;SRR=19;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:66:9,56:9:320:56:2005:-161.08,0,-9.47721 1/1:112:8,103:8:287:103:3702:-307.197,-7.59754,0 1/1:50:0,50:0:0:50:1764:-159.035,-15.0515,0 1/1:28:2,26:2:71:26:916:-76.0089,-1.68678,0 dDocent_Contig_2480 19 . G A 1042.21 . AB=0.306569;ABP=47.5334;AC=4;AF=0.5;AN=8;AO=42;CIGAR=1X;DP=137;DPB=137;DPRA=0;EPP=94.2121;EPPR=209.3;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.738095;PAIREDR=0.536842;PAO=0;PQA=0;PQR=0;PRO=0;QA=1656;QR=3695;RO=95;RPL=0;RPP=94.2121;RPPR=209.3;RPR=42;RUN=1;SAF=42;SAP=94.2121;SAR=0;SRF=95;SRP=209.3;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:44:30,14:30:1167:14:561:-37.5885,0,-92.0731 0/1:25:17,8:17:679:8:311:-20.8259,0,-53.9164 0/1:34:28,6:28:1087:6:238:-11.556,0,-87.8865 0/1:34:20,14:20:762:14:546:-39.2406,0,-58.661 dDocent_Contig_2481 41 . G T 59.6873 . AB=0.214286;ABP=12.937;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=114;DPB=114;DPRA=1.03571;EPP=16.0391;EPPR=237.529;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=244;QR=4254;RO=108;RPL=0;RPP=16.0391;RPPR=237.529;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=108;SRP=237.529;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:32:32,0:32:1280:0:0:0,-9.63296,-115.466 0/0:44:41,3:41:1605:3:123:0,-1.78053,-133.217 0/0:24:24,0:24:961:0:0:0,-7.22472,-86.7853 0/1:14:11,3:11:408:3:121:-7.06557,0,-32.8413 dDocent_Contig_2482 16 . G A 1040.77 . AB=0.15677;ABP=433.803;AC=3;AF=0.375;AN=8;AO=89;CIGAR=1X;DP=702;DPB=702;DPRA=0;EPP=196.271;EPPR=1325.45;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.8858;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.980424;PAO=0;PQA=0;PQR=0;PRO=0;QA=3506;QR=23800;RO=613;RPL=0;RPP=196.271;RPPR=1334.12;RPR=89;RUN=1;SAF=89;SAP=196.271;SAR=0;SRF=612;SRP=1325.45;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:281:258,23:258:10072:23:912:0,-2.20193,-823.506 0/1:141:115,26:115:4456:26:1019:-49.564,0,-358.563 0/1:177:151,26:151:5904:26:1015:-38.369,0,-477.831 0/1:103:89,14:89:3368:14:560:-19.7355,0,-272.2 dDocent_Contig_2483 32 . A G 9265.87 . AB=0.764706;ABP=147.86;AC=5;AF=0.625;AN=8;AO=288;CIGAR=1X;DP=344;DPB=344;DPRA=0;EPP=628.394;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=11125;QR=2151;RO=56;RPL=0;RPP=628.394;RPPR=124.613;RPR=288;RUN=1;SAF=288;SAP=628.394;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:65:20,45:20:775:45:1782:-141.035,0,-50.5027 1/1:106:0,106:0:0:106:4103:-369.301,-31.9092,0 0/1:86:19,67:19:736:67:2558:-204.49,0,-40.6731 0/1:87:17,70:17:640:70:2682:-215.352,0,-31.737 dDocent_Contig_2484 67 . A T 4759.44 . AB=0.676136;ABP=50.4372;AC=5;AF=0.625;AN=8;AO=149;CIGAR=1X;DP=206;DPB=206;DPRA=0;EPP=326.56;EPPR=126.784;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5906;QR=2273;RO=57;RPL=149;RPP=326.56;RPPR=126.784;RPR=0;RUN=1;SAF=149;SAP=326.56;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:54:20,34:20:793:34:1342:-104.79,0,-55.4357 0/1:63:28,35:28:1120:35:1360:-103.684,0,-82.12 0/1:59:9,50:9:360:50:1995:-161.981,0,-15.0025 1/1:30:0,30:0:0:30:1209:-109.08,-9.0309,0 dDocent_Contig_2485 79 . A G 13461.1 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=473;CIGAR=1X;DP=506;DPB=506;DPRA=0;EPP=1030.12;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=16088;QR=1132;RO=32;RPL=473;RPP=1030.12;RPPR=72.4974;RPR=0;RUN=1;SAF=473;SAP=1030.12;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:132:11,121:11:390:121:4113:-334.94,-4.29673,0 1/1:181:12,168:12:426:168:5722:-476.454,-15.876,0 1/1:116:3,113:3:106:113:3831:-335.117,-25.0303,0 1/1:77:6,71:6:210:71:2422:-199,-3.93739,0 dDocent_Contig_2486 54 . G T 183.329 . AB=0.144231;ABP=117.347;AC=1;AF=0.125;AN=8;AO=19;CIGAR=1X;DP=271;DPB=271;DPRA=1.01493;EPP=44.2683;EPPR=550.221;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.996032;PAO=0;PQA=0;PQR=0;PRO=0;QA=713;QR=10039;RO=252;RPL=19;RPP=44.2683;RPPR=550.221;RPR=0;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=252;SRP=550.221;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:67:67,0:67:2669:0:0:0,-20.169,-240.334 0/1:104:89,15:89:3530:15:560:-19.4298,0,-286.418 0/0:54:52,2:52:2092:2:77:0,-8.94648,-181.153 0/0:46:44,2:44:1748:2:76:0,-6.63271,-150.318 dDocent_Contig_2487 56 . G C 271.322 . AB=0.140244;ABP=187.374;AC=3;AF=0.375;AN=8;AO=30;CIGAR=1X;DP=249;DPB=249;DPRA=0;EPP=68.1545;EPPR=478.563;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1138;QR=8432;RO=219;RPL=30;RPP=68.1545;RPPR=478.563;RPR=0;RUN=1;SAF=30;SAP=68.1545;SAR=0;SRF=219;SRP=478.563;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:85:78,7:78:2989:7:261:0,-1.74331,-245.322 0/1:66:60,6:60:2346:6:233:-1.46918,0,-191.461 0/1:56:46,10:46:1756:10:375:-17.2418,0,-141.43 0/1:42:35,7:35:1341:7:269:-11.9294,0,-108.324 dDocent_Contig_2488 8 . T A 83.1492 . AB=0.18;ABP=47.4821;AC=3;AF=0.375;AN=8;AO=9;CIGAR=1X2M1X1M2X1M1X;DP=65;DPB=65;DPRA=1.11111;EPP=22.5536;EPPR=120.27;GTI=0;LEN=1;MEANALT=1;MQM=34;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=330;QR=1991;RO=54;RPL=0;RPP=22.5536;RPPR=120.27;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:12:10,2:10:375:2:75:-2.54187,0,-30.4881 0|0:15:13,0:13:473:0:0:0,-3.91339,-42.5617 0|1:19:15,4:15:546:4:147:-6.16981,0,-43.752 0|1:19:16,3:16:597:3:108:-3.18554,0,-48.3444 dDocent_Contig_2489 30 . A G 2922.61 . AB=0.28934;ABP=78.9457;AC=5;AF=0.625;AN=8;AO=98;CIGAR=1X;DP=238;DPB=238;DPRA=0;EPP=215.815;EPPR=307.016;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3933;QR=5430;RO=140;RPL=0;RPP=215.815;RPPR=307.016;RPR=98;RUN=1;SAF=98;SAP=215.815;SAR=0;SRF=140;SRP=307.016;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:41:0,41:0:0:41:1641:-147.911,-12.3422,0 0/1:55:46,9:46:1810:9:362:-16.3871,0,-146.569 0/1:80:62,18:62:2392:18:725:-41.4933,0,-191.366 0/1:62:32,30:32:1228:30:1205:-90.061,0,-92.1272 dDocent_Contig_2490 8 . T A 1118.05 . AB=0.0567164;ABP=574.782;AC=1;AF=0.125;AN=8;AO=25;CIGAR=2X4M1X2M3X;DP=456;DPB=455.917;DPRA=0;EPP=57.2971;EPPR=597.994;GTI=0;LEN=1;MEANALT=7.25;MQM=57;MQMR=60;NS=4;NUMALT=5;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=961;QR=9882;RO=274;RPL=0;RPP=57.2971;RPPR=597.994;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=274;SRP=597.994;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:150:87,5,9,4,20,18:87:3079:5,9,4,20,18:199,344,154,759,713:-36.0491,-45.8504,-295.097,-34.0114,-268.375,-282.053,-49.6041,-283.967,-272.128,-299.151,0,-234.363,-222.523,-238.116,-244.73,-3.54728,-237.914,-226.075,-241.668,-192.062,-248.884 0|1:120:74,12,7,13,10,3:74:2683:12,7,13,10,3:469,268,499,376,121:-18.6518,-2.36562,-217.791,-18.9341,-199.409,-235.863,0,-180.475,-197.042,-215.123,-10.1262,-190.6,-207.167,-188.233,-226.151,-30.9521,-211.428,-227.995,-209.061,-219.186,-249.086 0|0:121:86,5,7,6,6,8:86:3150:5,7,6,6,8:191,271,230,240,314:0,-10.2163,-266.139,-3.62229,-245.38,-258.944,-7.02425,-248.781,-242.188,-262.646,-6.11245,-247.872,-241.279,-244.68,-261.737,-0.0605386,-241.82,-235.228,-238.628,-237.719,-255.083 0|0:65:27,1,7,2,22,4:27:970:1,7,2,22,4:40,272,78,839,145:-60.6913,-65.5235,-144.338,-46.4658,-122.285,-123.473,-62.413,-138.232,-119.174,-140.926,0,-75.814,-56.7541,-72.7032,-72.4872,-56.9855,-132.803,-113.745,-129.693,-67.2746,-134.895 dDocent_Contig_2491 7 . A G 9244.43 . AB=0.791667;ABP=286.749;AC=5;AF=0.625;AN=8;AO=338;CIGAR=2X1M1X1M1X1M1X;DP=419;DPB=419;DPRA=0;EPP=736.968;EPPR=135.47;GTI=0;LEN=1;MEANALT=3.25;MQM=57.8373;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.952663;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=11879;QR=2392;RO=61;RPL=0;RPP=736.968;RPPR=135.47;RPR=338;RUN=1;SAF=338;SAP=736.968;SAR=0;SRF=61;SRP=135.47;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:168:16,141:16:627:141:4937:-391.279,0,-9.16143 0|1:98:20,74:20:784:74:2627:-198.159,0,-42.2856 0|1:118:25,89:25:981:89:3134:-241.571,0,-53.9449 1|1:35:0,34:0:0:34:1181:-97.0263,-10.235,0 dDocent_Contig_2495 54 . G T 139.402 . AB=0.133333;ABP=108.11;AC=2;AF=0.25;AN=8;AO=17;CIGAR=1X;DP=188;DPB=188;DPRA=0;EPP=39.9253;EPPR=374.332;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=0.988304;PAO=0;PQA=0;PQR=0;PRO=0;QA=648;QR=6574;RO=171;RPL=17;RPP=39.9253;RPPR=374.332;RPR=0;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=171;SRP=374.332;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:54:53,1:53:1987:1:39:0,-12.3591,-175.143 0/0:44:40,4:40:1565:4:137:0,-0.58022,-128.435 0/1:47:40,7:40:1537:7:273:-10.7891,0,-124.435 0/1:43:38,5:38:1485:5:199:-5.34377,0,-120.961 dDocent_Contig_2496 44 . T C 10630.4 . AB=0.63197;ABP=84.3961;AC=4;AF=0.5;AN=8;AO=340;CIGAR=1X;DP=538;DPB=538;DPRA=0;EPP=741.311;EPPR=415.766;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.959596;PAO=0;PQA=0;PQR=0;PRO=0;QA=13665;QR=7923;RO=198;RPL=0;RPP=741.311;RPPR=424.32;RPR=340;RUN=1;SAF=340;SAP=741.311;SAR=0;SRF=197;SRP=424.32;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:251:101,150:101:4045:150:5988:-463.126,0,-288.464 0/1:138:56,82:56:2237:82:3340:-259.085,0,-159.954 0/1:99:31,68:31:1238:68:2731:-216.098,0,-81.8876 0/1:50:10,40:10:403:40:1606:-129.717,0,-21.5786 dDocent_Contig_2497 42 . T C 4064.9 . AB=0.619469;ABP=17.0192;AC=5;AF=0.625;AN=8;AO=127;CIGAR=1X;DP=174;DPB=174;DPRA=0;EPP=270.17;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5090;QR=1872;RO=47;RPL=1;RPP=270.17;RPPR=105.07;RPR=126;RUN=1;SAF=127;SAP=278.787;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:61:4,57:4:163:57:2286:-190.837,-3.3044,0 0/1:47:12,35:12:480:35:1394:-111.559,0,-29.4021 0/1:32:12,20:12:485:20:805:-63.1337,0,-34.3667 0/1:34:19,15:19:744:15:605:-44.5516,0,-57.0369 dDocent_Contig_2498 19 . C T 2707.29 . AB=0.257036;ABP=276.302;AC=4;AF=0.5;AN=8;AO=137;CIGAR=1X;DP=533;DPB=533;DPRA=0;EPP=300.502;EPPR=860.742;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4831;QR=15783;RO=395;RPL=0;RPP=300.502;RPPR=860.742;RPR=137;RUN=1;SAF=137;SAP=300.502;SAR=0;SRF=395;SRP=860.742;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:177:143,34:143:5761:34:1209:-55.8243,0,-464.988 0/1:179:127,51:127:5101:51:1733:-102.538,0,-405.258 0/1:92:59,33:59:2328:33:1188:-79.5253,0,-181.994 0/1:85:66,19:66:2593:19:701:-37.8315,0,-207.908 dDocent_Contig_2499 43 . A C 24112 . AB=0.815296;ABP=601.4;AC=5;AF=0.625;AN=8;AO=776;CIGAR=1X;DP=919;DPB=919;DPRA=0;EPP=1688.07;EPPR=302.735;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=29748;QR=5505;RO=142;RPL=0;RPP=1688.07;RPPR=302.735;RPR=776;RUN=1;SAF=776;SAP=1688.07;SAR=0;SRF=142;SRP=311.359;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:290:38,251:38:1485:251:9536:-770.391,0,-46.5093 1/1:226:15,211:15:582:211:8117:-677.463,-15.316,0 0/1:225:51,174:51:1963:174:6702:-535.246,0,-109.143 0/1:178:38,140:38:1475:140:5393:-431.693,0,-79.42 dDocent_Contig_2500 12 . C T 431.523 . AB=0.168919;ABP=143.921;AC=1;AF=0.125;AN=8;AO=25;CIGAR=1X;DP=406;DPB=406;DPRA=1.72093;EPP=57.2971;EPPR=828.17;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=980;QR=15139;RO=380;RPL=0;RPP=57.2971;RPPR=828.17;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=380;SRP=828.17;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:148:123,25:123:4902:25:980:-43.9481,0,-396.529 0/0:126:125,0:125:4965:0:0:0,-37.6287,-446.344 0/0:78:78,0:78:3108:0:0:0,-23.4803,-279.801 0/0:54:54,0:54:2164:0:0:0,-16.2556,-194.931 dDocent_Contig_2501 60 . G A 3494.07 . AB=0.62069;ABP=28.6936;AC=4;AF=0.5;AN=8;AO=126;CIGAR=1X4M;DP=203;DPB=203;DPRA=0;EPP=259.52;EPPR=131.127;GTI=0;LEN=1;MEANALT=2.25;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.968254;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4554;QR=2018;RO=59;RPL=126;RPP=276.616;RPPR=131.127;RPR=0;RUN=1;SAF=124;SAP=259.52;SAR=2;SRF=59;SRP=131.127;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:23:6,4,13:6:211:4,13:125,470:-36.5959,-28.3715,-44.3402,0,-7.17297,-13.286 0|1:37:11,0,26:11:371:0,26:0,928:-72.6958,-76.0071,-106.068,0,-30.4042,-22.5775 0|1:75:17,9,47:17:590:9,47:310,1703:-133.959,-113.899,-159.15,0,-22.7962,-33.8313 0|1:68:25,3,40:25:846:3,40:104,1453:-111.146,-110.219,-177.893,0,-60.1242,-56.5372 dDocent_Contig_2502 23 . G A 3712.93 . AB=0.685484;ABP=40.0654;AC=5;AF=0.625;AN=8;AO=118;CIGAR=1X;DP=159;DPB=159;DPRA=0;EPP=259.244;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=0.838983;PAIREDR=0.902439;PAO=0;PQA=0;PQR=0;PRO=0;QA=4651;QR=1605;RO=41;RPL=0;RPP=259.244;RPPR=92.0407;RPR=118;RUN=1;SAF=118;SAP=259.244;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:44:17,27:17:680:27:1043:-80.9144,0,-48.2845 0/1:57:13,44:13:495:44:1750:-140.567,0,-27.7283 1/1:35:2,33:2:79:33:1310:-110.673,-3.03881,0 0/1:23:9,14:9:351:14:548:-42.7305,0,-25.0237 dDocent_Contig_2503 28 . C T 11078.9 . AB=0.767059;ABP=266.29;AC=5;AF=0.625;AN=8;AO=395;CIGAR=1X;DP=498;DPB=498;DPRA=0;EPP=860.742;EPPR=224.5;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=13925;QR=4106;RO=102;RPL=0;RPP=860.742;RPPR=224.5;RPR=395;RUN=1;SAF=395;SAP=860.742;SAR=0;SRF=102;SRP=224.5;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:204:41,163:41:1654:163:5791:-459.855,0,-87.6714 0/1:164:42,121:42:1683:121:4286:-336.747,0,-102.538 1/1:73:4,69:4:160:69:2421:-203.337,-7.19139,0 0/1:57:15,42:15:609:42:1427:-111.546,0,-37.9889 dDocent_Contig_2504 53 . T G 51.4318 . AB=0.0990099;ABP=285.13;AC=3;AF=0.375;AN=8;AO=23;CIGAR=1X;DP=280;DPB=280;DPRA=0;EPP=52.9542;EPPR=558.907;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.869565;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=863;QR=9722;RO=256;RPL=23;RPP=52.9542;RPPR=558.907;RPR=0;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=256;SRP=558.907;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:109:99,10:99:3767:10:363:-0.197816,0,-306.306 0/0:78:75,3:75:2864:3:116:0,-12.6626,-247.109 0/1:61:53,7:53:2000:7:268:-6.17238,0,-161.936 0/1:32:29,3:29:1091:3:116:-1.18458,0,-88.858 dDocent_Contig_2505 7 . G A 10778 . AB=0.522161;ABP=6.09006;AC=4;AF=0.5;AN=8;AO=377;CIGAR=1X;DP=722;DPB=722;DPRA=0;EPP=821.655;EPPR=726.111;GTI=0;LEN=1;MEANALT=1.75;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=14405;QR=10837;RO=333;RPL=0;RPP=821.655;RPPR=726.111;RPR=377;RUN=1;SAF=377;SAP=821.655;SAR=0;SRF=333;SRP=726.111;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:214:126,83:126:4077:83:3189:-224.093,0,-304.003 0/1:178:76,99:76:2354:99:3789:-288.323,0,-159.274 0/1:184:83,97:83:2816:97:3693:-278.146,0,-199.302 0/1:146:48,98:48:1590:98:3734:-292.227,0,-99.4072 dDocent_Contig_2507 123 . A G 881.302 . AB=0.233645;ABP=134.882;AC=3;AF=0.375;AN=8;AO=54;CIGAR=1X;DP=287;DPB=287;DPRA=0;EPP=120.27;EPPR=508.963;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1864;QR=7990;RO=233;RPL=0;RPP=120.27;RPPR=508.963;RPR=54;RUN=1;SAF=0;SAP=120.27;SAR=54;SRF=0;SRP=508.963;SRR=233;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:113:82,31:82:2844:31:1061:-61.7806,0,-222.194 0/1:77:62,15:62:2092:15:523:-24.2212,0,-165.369 0/0:73:69,4:69:2366:4:140:0,-9.03026,-200.261 0/1:24:20,4:20:688:4:140:-5.72021,0,-55.0161 dDocent_Contig_2508 74 . C T 149.724 . AB=0.205128;ABP=32.4644;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=187;DPB=187;DPRA=0.790541;EPP=20.3821;EPPR=391.704;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=305;QR=6760;RO=179;RPL=8;RPP=20.3821;RPPR=391.704;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=179;SRP=391.704;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:39:39,0:39:1481:0:0:0,-11.7402,-133.564 0/0:72:72,0:72:2748:0:0:0,-21.6742,-247.503 0/1:39:31,8:31:1172:8:305:-16.0693,0,-94.0393 0/0:37:37,0:37:1359:0:0:0,-11.1381,-122.608 dDocent_Contig_2509 13 . T C 9020.27 . AB=0.444755;ABP=21.9644;AC=4;AF=0.5;AN=8;AO=318;CIGAR=1X;DP=715;DPB=715;DPRA=0;EPP=693.539;EPPR=865.085;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.9773;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.997481;PAO=0;PQA=0;PQR=0;PRO=0;QA=12465;QR=15687;RO=397;RPL=0;RPP=693.539;RPPR=865.085;RPR=318;RUN=1;SAF=318;SAP=693.539;SAR=0;SRF=397;SRP=865.085;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:212:66,146:66:2611:146:5703:-449.315,0,-171.306 0/1:144:89,55:89:3536:55:2173:-152.407,0,-274.93 0/1:207:145,62:145:5718:62:2422:-155.833,0,-452.14 0/1:152:97,55:97:3822:55:2167:-149.461,0,-298.203 dDocent_Contig_2510 94 . T C 6768.94 . AB=0.788732;ABP=105.834;AC=6;AF=0.75;AN=8;AO=238;CIGAR=1X;DP=270;DPB=270;DPRA=0;EPP=519.821;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.978992;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=8082;QR=1110;RO=32;RPL=238;RPP=519.821;RPPR=72.4974;RPR=0;RUN=1;SAF=238;SAP=519.821;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:57:17,40:17:589:40:1343:-104.006,0,-36.178 1/1:78:0,78:0:0:78:2636:-237.498,-23.4803,0 0/1:85:13,72:13:451:72:2474:-197.336,0,-15.3341 1/1:50:2,48:2:70:48:1629:-140.248,-8.4041,0 dDocent_Contig_2511 11 . A C 135.51 . AB=0.169811;ABP=53.2;AC=2;AF=0.25;AN=8;AO=9;CIGAR=1X;DP=140;DPB=140;DPRA=0.609195;EPP=22.5536;EPPR=287.473;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=344;QR=5063;RO=131;RPL=0;RPP=22.5536;RPPR=287.473;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=131;SRP=287.473;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:70:70,0:70:2719:0:0:0,-21.0721,-244.858 0/1:36:32,4:32:1217:4:151:-3.11971,0,-98.9719 0/1:17:12,5:12:463:5:193:-12.623,0,-36.8997 0/0:17:17,0:17:664:0:0:0,-5.11751,-60.0867 dDocent_Contig_2512 56 . G A 276.7 . AB=0.444444;ABP=3.73412;AC=1;AF=0.125;AN=8;AO=12;CIGAR=2X;DP=66;DPB=66;DPRA=2.07692;EPP=29.068;EPPR=120.27;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.925926;PAO=0;PQA=0;PQR=0;PRO=0;QA=403;QR=1813;RO=54;RPL=12;RPP=29.068;RPPR=120.27;RPR=0;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:27:15,12:15:521:12:403:-28.4659,0,-39.0918 0|0:11:11,0:11:355:0:0:0,-3.31133,-32.261 0|0:21:21,0:21:697:0:0:0,-6.32163,-63.0426 0|0:7:7,0:7:240:0:0:0,-2.10721,-21.9353 dDocent_Contig_2513 107 . N A 568.389 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=18;CIGAR=1X2M1D5M;DP=18;DPB=16;DPRA=0;EPP=42.0968;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=610;QR=0;RO=0;RPL=0;RPP=42.0968;RPPR=0;RPR=18;RUN=1;SAF=0;SAP=42.0968;SAR=18;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:3:0,3:0:0:3:102:-9.5168,-0.90309,0 1|1:5:0,5:0:0:5:168:-15.4511,-1.50515,0 1|1:6:0,6:0:0:6:206:-18.8768,-1.80618,0 1|1:4:0,4:0:0:4:134:-12.3912,-1.20412,0 dDocent_Contig_2514 72 . G T 79.5614 . AB=0.15;ABP=45.5712;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=119;DPB=119;DPRA=1.51899;EPP=16.0391;EPPR=248.387;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=227;QR=4000;RO=113;RPL=6;RPP=16.0391;RPPR=248.387;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=113;SRP=248.387;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:40:34,6:34:1238:6:227:-8.75202,0,-99.676 0/0:25:25,0:25:868:0:0:0,-7.52575,-78.4331 0/0:32:32,0:32:1141:0:0:0,-9.63296,-102.987 0/0:22:22,0:22:753:0:0:0,-6.62266,-68.076 dDocent_Contig_2515 209 . N G 117.013 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=118;QR=0;RO=0;RPL=3;RPP=9.52472;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:79:-7.49724,-0.60206,0 ./.:.:.:.:.:.:.:. 1/1:1:0,1:0:0:1:39:-3.89656,-0.30103,0 ./.:.:.:.:.:.:.:. dDocent_Contig_2516 7 . A G 1578.5 . AB=0.171913;ABP=775.287;AC=3;AF=0.375;AN=8;AO=162;CIGAR=1X1M;DP=1156;DPB=1156;DPRA=0;EPP=354.789;EPPR=1942.14;GTI=0;LEN=1;MEANALT=4.5;MQM=60;MQMR=59.9832;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4860;QR=33682;RO=893;RPL=0;RPP=354.789;RPPR=1942.14;RPR=162;RUN=1;SAF=162;SAP=354.789;SAR=0;SRF=893;SRP=1942.14;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:330:291,16,20:291:11052:16,20:514,576:0,-46.1594,-947.759,-41.8151,-906.785,-942.187 0|1:312:235,7,64:235:8788:7,64:249,1904:-81.3138,-131.76,-849.323,0,-699.435,-700.457 0|1:317:239,29,42:239:8993:29,42:927,1300:-32.3562,-29.6312,-757.704,0,-662.148,-724.161 0|1:197:128,29,36:128:4849:29,36:979,1080:-47.7717,-6.95708,-395.839,0,-318.267,-386.752 dDocent_Contig_2517 18 . C A 759.957 . AB=0.15047;ABP=341.522;AC=1;AF=0.125;AN=8;AO=85;CIGAR=1X;DP=1098;DPB=1098;DPRA=0;EPP=187.585;EPPR=2202.71;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.8174;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3414;QR=40722;RO=1013;RPL=0;RPP=187.585;RPPR=2202.71;RPR=85;RUN=1;SAF=85;SAP=187.585;SAR=0;SRF=1013;SRP=2202.71;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:319:271,48:271:10884:48:1918:-76.7916,0,-882.778 0/0:272:262,10:262:10519:10:401:0,-45.4311,-908.214 0/0:288:271,17:271:10874:17:690:0,-24.2674,-914.655 0/0:219:209,10:209:8445:10:405:0,-29.1157,-722.723 dDocent_Contig_2518 107 . N A 131.903 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=5.18177;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=53.75;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0.75;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=138;QR=0;RO=0;RPL=0;RPP=11.6962;RPPR=0;RPR=4;RUN=1;SAF=1;SAP=5.18177;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1:0,1:0:0:1:33:-3.08764,-0.30103,0 1/1:3:0,3:0:0:3:105:-9.79609,-0.90309,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_2519 8 . G C 42.6155 . AB=0.1875;ABP=16.582;AC=2;AF=0.25;AN=8;AO=3;CIGAR=1X;DP=53;DPB=53;DPRA=0.432432;EPP=9.52472;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.333333;PAIREDR=0.9;PAO=0;PQA=0;PQR=0;PRO=0;QA=117;QR=1654;RO=50;RPL=0;RPP=9.52472;RPPR=111.584;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:11,0:11:383:0:0:0,-3.31133,-34.7953 0/0:26:26,0:26:856:0:0:0,-7.82678,-77.3285 0/1:7:5,2:5:162:2:78:-5.29626,0,-12.7912 0/1:9:8,1:8:253:1:39:-1.18729,0,-20.3685 dDocent_Contig_2520 46 . T G 41.8513 . AB=0.157895;ABP=22.325;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=70;DPB=70;DPRA=1.11765;EPP=9.52472;EPPR=148.499;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=118;QR=2679;RO=67;RPL=3;RPP=9.52472;RPPR=148.499;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=67;SRP=148.499;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:21:21,0:21:840:0:0:0,-6.32163,-75.9142 0/1:19:16,3:16:650:3:118:-5.28201,0,-53.1134 0/0:17:17,0:17:677:0:0:0,-5.11751,-61.2603 0/0:13:13,0:13:512:0:0:0,-3.91339,-46.4276 dDocent_Contig_2521 18 . C G 116.622 . AB=0.3;ABP=9.95901;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=112;DPB=112;DPRA=1.11321;EPP=3.0103;EPPR=228.843;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=285;QR=4158;RO=104;RPL=0;RPP=20.3821;RPPR=228.843;RPR=8;RUN=1;SAF=4;SAP=3.0103;SAR=4;SRF=104;SRP=228.843;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:40:40,0:40:1603:0:0:0,-12.0412,-144.508 0/0:39:37,2:37:1487:2:80:0,-4.14859,-126.484 0/0:13:13,0:13:521:0:0:0,-3.91339,-47.2331 0/1:20:14,6:14:547:6:205:-12.7591,0,-43.5461 dDocent_Contig_2522 48 . A G 550.59 . AB=0.154867;ABP=236.838;AC=1;AF=0.125;AN=8;AO=56;CIGAR=1X;DP=775;DPB=775;DPRA=1.59453;EPP=116.082;EPPR=105.402;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.982143;PAIREDR=0.980501;PAO=0;PQA=0;PQR=0;PRO=0;QA=2203;QR=27796;RO=718;RPL=1;RPP=116.082;RPPR=105.402;RPR=55;RUN=1;SAF=56;SAP=124.613;SAR=0;SRF=718;SRP=1562.13;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:227:210,17:210:8122:17:668:0,-7.88859,-670.227 0/1:226:191,35:191:7426:35:1377:-56.1559,0,-600.035 0/0:188:183,4:183:7057:4:158:0,-41.8436,-620.383 0/0:134:134,0:134:5191:0:0:0,-40.338,-467.126 dDocent_Contig_2525 36 . G A 75.2236 . AB=0.113924;ABP=105.289;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X;DP=332;DPB=332;DPRA=0.936759;EPP=22.5536;EPPR=704.396;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=356;QR=12746;RO=323;RPL=0;RPP=22.5536;RPPR=704.396;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=323;SRP=704.396;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:98:98,0:98:3843:0:0:0,-29.5009,-345.872 0/1:79:70,9:70:2797:9:356:-8.61927,0,-228.068 0/0:95:95,0:95:3749:0:0:0,-28.5978,-337.436 0/0:60:60,0:60:2357:0:0:0,-18.0618,-212.293 dDocent_Contig_2526 20 . C A 367.906 . AB=0.143713;ABP=187.143;AC=1;AF=0.125;AN=8;AO=25;CIGAR=1X;DP=450;DPB=450;DPRA=1.1028;EPP=57.2971;EPPR=923.715;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1001;QR=16951;RO=424;RPL=0;RPP=57.2971;RPPR=923.715;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=424;SRP=923.715;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:167:142,24:142:5704:24:974:-37.5864,0,-462.78 0/0:117:117,0:117:4640:0:0:0,-35.2205,-417.526 0/0:97:97,0:97:3877:0:0:0,-29.1999,-348.927 0/0:69:68,1:68:2730:1:27:0,-18.0713,-243.105 dDocent_Contig_2527 14 . C A 933.754 . AB=0.225131;ABP=128.353;AC=4;AF=0.5;AN=8;AO=43;CIGAR=1X;DP=191;DPB=191;DPRA=0;EPP=96.3836;EPPR=322.217;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1717;QR=5923;RO=147;RPL=0;RPP=96.3836;RPPR=322.217;RPR=43;RUN=1;SAF=43;SAP=96.3836;SAR=0;SRF=147;SRP=322.217;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:59:42,17:42:1691:17:677:-43.4972,0,-134.651 0/1:59:50,8:50:2017:8:316:-10.9546,0,-163.867 0/1:45:36,9:36:1447:9:362:-19.3978,0,-116.935 0/1:28:19,9:19:768:9:362:-24.5155,0,-61.0124 dDocent_Contig_2528 36 . G A 4982.92 . AB=0.699115;ABP=41.9239;AC=5;AF=0.625;AN=8;AO=152;CIGAR=1X;DP=186;DPB=186;DPRA=0;EPP=333.074;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5943;QR=1355;RO=34;RPL=0;RPP=333.074;RPPR=76.8404;RPR=152;RUN=1;SAF=152;SAP=333.074;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:73:0,73:0:0:73:2839:-255.651,-21.9752,0 0/1:63:15,48:15:605:48:1885:-150.902,0,-35.8241 0/1:36:12,24:12:468:24:938:-73.8829,0,-31.6298 0/1:14:7,7:7:282:7:281:-21.4476,0,-21.538 dDocent_Contig_2529 54 . C T 1452.75 . AB=0.381944;ABP=20.4424;AC=3;AF=0.375;AN=8;AO=56;CIGAR=1X;DP=195;DPB=195;DPRA=0;EPP=124.613;EPPR=304.845;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2166;QR=5565;RO=139;RPL=56;RPP=124.613;RPPR=304.845;RPR=0;RUN=1;SAF=56;SAP=124.613;SAR=0;SRF=139;SRP=304.845;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:69:24,45:24:941:45:1733:-135.418,0,-64.2145 0/0:51:50,1:50:2014:1:41:0,-11.258,-177.354 0/1:34:29,5:29:1163:5:200:-8.1434,0,-94.7157 0/1:41:36,5:36:1447:5:192:-5.3053,0,-118.134 dDocent_Contig_2531 17 . G A 70.5089 . AB=0.107843;ABP=139.26;AC=3;AF=0.375;AN=8;AO=11;CIGAR=1X;DP=113;DPB=113;DPRA=3.09091;EPP=26.8965;EPPR=224.5;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.980392;PAO=0;PQA=0;PQR=0;PRO=0;QA=437;QR=4049;RO=102;RPL=0;RPP=26.8965;RPPR=224.5;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=102;SRP=224.5;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:22,2:22:854:2:82:-0.554958,0,-69.9487 0/1:58:52,6:52:2080:6:233:-3.87714,0,-169.923 0/1:20:17,3:17:679:3:122:-5.35189,0,-55.4179 0/0:11:11,0:11:436:0:0:0,-3.31133,-39.5926 dDocent_Contig_2532 18 . T A 16154.6 . 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AB=0.214123;ABP=314.639;AC=4;AF=0.5;AN=8;AO=94;CIGAR=1X;DP=439;DPB=439;DPRA=0;EPP=207.129;EPPR=749.997;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3051;QR=11075;RO=344;RPL=0;RPP=207.129;RPPR=749.997;RPR=94;RUN=1;SAF=0;SAP=207.129;SAR=94;SRF=0;SRP=749.997;SRR=344;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:155:133,21:133:4309:21:705:-17.3247,0,-341.583 0/1:75:66,9:66:2124:9:305:-5.20239,0,-168.85 0/1:120:73,47:73:2295:47:1509:-99.96,0,-170.681 0/1:89:72,17:72:2347:17:532:-21.3862,0,-184.697 dDocent_Contig_2536 32 . A G 2217.31 . 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AB=0.419786;ABP=23.9122;AC=4;AF=0.5;AN=8;AO=157;CIGAR=1X2M2X1M1X3M3D7M3D4M;DP=374;DPB=318.889;DPRA=0;EPP=343.931;EPPR=44.2683;GTI=0;LEN=1;MEANALT=6.75;MQM=57.7834;MQMR=60;NS=4;NUMALT=5;ODDS=1.11022e-16;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5539;QR=709;RO=19;RPL=0;RPP=343.931;RPPR=44.2683;RPR=157;RUN=1;SAF=157;SAP=343.931;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:86:0,38,0,16,12,15:0:0:38,0,16,12,15:1293,0,593,460,592:-152.191,-48.7163,-37.2772,-152.191,-48.7163,-152.191,-103.672,-0.200826,-103.672,-98.8552,-114.44,-10.9657,-114.44,-65.9184,-110.828,-103.477,0,-103.477,-54.9541,-65.7228,-98.9615 1|0:83:6,35,5,10,12,12:6:226:35,5,10,12,12:1230,184,374,458,463:-117.24,-19.4981,-27.4825,-104.001,-22.9739,-121.017,-88.4193,-7.39325,-91.8949,-103.93,-81.4702,-0.443367,-84.9458,-69.3643,-96.3794,-81.0274,0,-84.5031,-68.9215,-61.9721,-95.9367 1|0:122:13,42,6,29,4,27:13:483:42,6,29,4,27:1517,219,1075,150,1046:-168.277,-48.4214,-75.3075,-154.3,-70.0611,-192.024,-84.237,0,-105.877,-115.037,-159.905,-75.6655,-181.545,-111.482,-198.231,-86.2718,-2.03155,-107.912,-37.8473,-113.517,-117.675 1|0:83:0,42,1,22,0,15:0:0:42,1,22,0,15:1499,39,809,0,568:-188.319,-66.1465,-53.5033,-185.113,-62.94,-184.812,-122.174,0,-118.968,-115.552,-188.319,-66.1465,-185.113,-122.174,-188.319,-141.763,-19.5861,-138.557,-75.6157,-141.763,-137.247 dDocent_Contig_2538 4 . T C 134.103 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=4;CIGAR=7I1X2M1X;DP=4;DPB=11;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=138;QR=0;RO=0;RPL=0;RPP=11.6962;RPPR=0;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:2:0,2:0:0:2:67:-6.36284,-0.60206,0 .:.:.:.:.:.:.:. 1|1:2:0,2:0:0:2:71:-6.74206,-0.60206,0 .:.:.:.:.:.:.:. dDocent_Contig_2539 7 . G A 204.951 . AB=0.116822;ABP=275.926;AC=1;AF=0.125;AN=8;AO=25;CIGAR=1X;DP=931;DPB=931;DPRA=0.895397;EPP=57.2971;EPPR=1913.91;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=59.9977;NS=4;NUMALT=1;ODDS=0;PAIRED=0.56;PAIREDR=0.518182;PAO=0;PQA=0;PQR=0;PRO=0;QA=928;QR=28284;RO=880;RPL=0;RPP=57.2971;RPPR=1913.91;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=880;SRP=1913.91;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:264:258,0:258:8354:0:0:0,-77.6657,-751.663 0/0:208:203,0:203:6605:0:0:0,-61.1091,-594.32 0/0:245:238,0:238:7519:0:0:0,-71.6451,-676.556 0/1:214:181,25:181:5806:25:928:-21.592,0,-460.381 dDocent_Contig_2540 10 . G A 343.814 . AB=0.238806;ABP=42.7126;AC=1;AF=0.125;AN=8;AO=19;CIGAR=2X;DP=215;DPB=215;DPRA=1.10784;EPP=44.2683;EPPR=363.508;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=59.2642;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.911917;PAO=0;PQA=0;PQR=0;PRO=0;QA=715;QR=6692;RO=193;RPL=0;RPP=44.2683;RPPR=422.104;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=186;SRP=363.508;SRR=7;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:79:79,0:79:2736:0:0:0,-23.7814,-246.464 0|1:67:48,16:48:1698:16:607:-35.4783,0,-133.627 0|0:46:43,3:43:1457:3:108:0,-3.77494,-121.298 0|0:23:23,0:23:801:0:0:0,-6.92369,-71.8005 dDocent_Contig_2542 131 . C G 4587.04 . AB=0.322034;ABP=181.549;AC=4;AF=0.5;AN=8;AO=209;CIGAR=1X;DP=649;DPB=649;DPRA=0;EPP=456.848;EPPR=958.458;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7310;QR=14977;RO=440;RPL=0;RPP=456.848;RPPR=958.458;RPR=209;RUN=1;SAF=0;SAP=456.848;SAR=209;SRF=0;SRP=958.458;SRR=440;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:251:227,24:227:7722:24:855:-1.71291,0,-619.511 0/1:159:100,59:100:3433:59:2078:-139.428,0,-261.339 0/1:148:55,93:55:1876:93:3250:-248.169,0,-124.569 0/1:91:58,33:58:1946:33:1127:-74.3351,0,-148.022 dDocent_Contig_2543 68 . C T 159.906 . AB=0.207547;ABP=42.3836;AC=2;AF=0.25;AN=8;AO=11;CIGAR=1X;DP=84;DPB=84;DPRA=1.70968;EPP=26.8965;EPPR=161.528;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=372;QR=2505;RO=73;RPL=11;RPP=26.8965;RPPR=161.528;RPR=0;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=73;SRP=161.528;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:16,3:16:551:3:98:-3.42448,0,-44.1966 0/0:7:7,0:7:240:0:0:0,-2.10721,-21.9352 0/1:34:26,8:26:886:8:274:-14.7589,0,-69.8176 0/0:24:24,0:24:828:0:0:0,-7.22472,-74.8376 dDocent_Contig_2546 10 . C T 240.759 . AB=0.423077;ABP=4.34659;AC=1;AF=0.125;AN=8;AO=11;CIGAR=1X;DP=89;DPB=89;DPRA=1.2381;EPP=26.8965;EPPR=172.385;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=360;QR=2971;RO=78;RPL=0;RPP=26.8965;RPPR=172.385;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=78;SRP=172.385;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:15,11:15:588:11:360:-24.8718,0,-45.4339 0/0:13:13,0:13:504:0:0:0,-3.91339,-45.704 0/0:33:33,0:33:1221:0:0:0,-9.93399,-110.158 0/0:17:17,0:17:658:0:0:0,-5.11751,-59.5512 dDocent_Contig_2547 14 . T A 37.926 . AB=0.109375;ABP=87.8334;AC=1;AF=0.125;AN=8;AO=10;CIGAR=1X3M6I2M;DP=305;DPB=317;DPRA=0.876984;EPP=24.725;EPPR=630.566;GTI=0;LEN=1;MEANALT=2;MQM=55.4;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=381;QR=11351;RO=289;RPL=0;RPP=24.725;RPPR=630.566;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=289;SRP=630.566;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:73:71,1:71:2807:1:37:0,-18.3543,-249.096 0|0:84:82,0:82:3219:0:0:0,-24.6845,-289.523 0|0:84:80,2:80:3141:2:79:0,-17.5823,-275.306 0|1:64:56,7:56:2184:7:265:-4.88944,0,-177.525 dDocent_Contig_2548 91 . T A 639.337 . AB=0.481481;ABP=3.17115;AC=2;AF=0.25;AN=8;AO=26;CIGAR=1X;DP=89;DPB=89;DPRA=1.54286;EPP=59.4686;EPPR=139.813;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.692308;PAIREDR=0.825397;PAO=0;PQA=0;PQR=0;PRO=0;QA=908;QR=2231;RO=63;RPL=26;RPP=59.4686;RPPR=139.813;RPR=0;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=63;SRP=139.813;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:34:17,17:17:596:17:595:-43.6418,0,-43.7332 0/0:21:21,0:21:749:0:0:0,-6.32163,-67.7361 0/1:20:11,9:11:387:9:313:-22.4857,0,-29.1463 0/0:14:14,0:14:499:0:0:0,-4.21442,-45.246 dDocent_Contig_2549 28 . C A 842.235 . AB=0.261194;ABP=69.3861;AC=2;AF=0.25;AN=8;AO=48;CIGAR=1M1D1X;DP=329;DPB=313;DPRA=0;EPP=107.241;EPPR=608.851;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.953405;PAO=0;PQA=0;PQR=0;PRO=0;QA=1901;QR=11152;RO=279;RPL=0;RPP=107.241;RPPR=608.851;RPR=48;RUN=1;SAF=48;SAP=107.241;SAR=0;SRF=279;SRP=608.851;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:112:79,33:79:3165:33:1316:-84.9878,0,-251.2 0|0:118:109,7:109:4368:7:267:0,-10.9354,-368.67 0|0:77:71,6:71:2822:6:239:0,-1.29502,-232.205 0|1:22:20,2:20:797:2:79:-0.874584,0,-65.4271 dDocent_Contig_2550 43 . C T 193.032 . AB=0.186441;ABP=53.3958;AC=2;AF=0.25;AN=8;AO=11;CIGAR=1X;DP=187;DPB=187;DPRA=0.460938;EPP=7.94546;EPPR=385.189;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=0.454545;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=428;QR=6933;RO=176;RPL=6;RPP=3.20771;RPPR=385.189;RPR=5;RUN=1;SAF=8;SAP=7.94546;SAR=3;SRF=176;SRP=385.189;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:55:55,0:55:2152:0:0:0,-16.5566,-193.869 0/0:73:73,0:73:2890:0:0:0,-21.9752,-260.216 0/1:40:34,6:34:1336:6:240:-9.93425,0,-108.465 0/1:19:14,5:14:555:5:188:-11.5628,0,-44.5733 dDocent_Contig_2551 19 . C A 20259 . AB=0.793427;ABP=162.303;AC=7;AF=0.875;AN=8;AO=643;CIGAR=1X;DP=695;DPB=695;DPRA=0;EPP=1399.27;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.5521;PAIREDR=0.865385;PAO=0;PQA=0;PQR=0;PRO=0;QA=23550;QR=2010;RO=52;RPL=0;RPP=1399.27;RPPR=115.927;RPR=643;RUN=1;SAF=643;SAP=1399.27;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:213:44,169:44:1694:169:6166:-490.843,0,-88.5961 1/1:182:0,182:0:0:182:6667:-600.012,-54.7875,0 1/1:173:0,173:0:0:173:6336:-570.243,-52.0782,0 1/1:127:8,119:8:316:119:4381:-365.597,-9.42433,0 dDocent_Contig_2552 64 . T C 40.9399 . AB=0.157895;ABP=22.325;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=69;DPB=69;DPRA=1.14;EPP=9.52472;EPPR=146.327;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=117;QR=2538;RO=66;RPL=3;RPP=9.52472;RPPR=146.327;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=66;SRP=146.327;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:7:7,0:7:267:0:0:0,-2.10721,-24.3921 0/1:19:16,3:16:615:3:117:-5.19081,0,-49.9699 0/0:35:35,0:35:1344:0:0:0,-10.536,-121.245 0/0:8:8,0:8:312:0:0:0,-2.40824,-28.4449 dDocent_Contig_2553 1 . N G 75.9611 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=4.60517;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=80;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:80:-7.59179,-0.60206,0 dDocent_Contig_2554 7 . A G 360.78 . AB=0.14375;ABP=355.766;AC=3;AF=0.375;AN=8;AO=58;CIGAR=1X;DP=489;DPB=489;DPRA=0;EPP=128.956;EPPR=936.743;GTI=0;LEN=1;MEANALT=1.25;MQM=55.6379;MQMR=58.6279;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.427907;PAO=0;PQA=0;PQR=0;PRO=0;QA=1886;QR=16274;RO=430;RPL=0;RPP=128.956;RPPR=936.743;RPR=58;RUN=1;SAF=58;SAP=128.956;SAR=0;SRF=430;SRP=936.743;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:204:174,29:174:6592:29:961:-25.4242,0,-525.693 0/0:169:157,12:157:5928:12:385:0,-15.9362,-497.974 0/1:59:51,8:51:1919:8:299:-9.47813,0,-155.148 0/1:57:48,9:48:1835:9:241:-4.76734,0,-148.194 dDocent_Contig_2555 39 . G A 810.417 . AB=0.21164;ABP=139.514;AC=3;AF=0.375;AN=8;AO=42;CIGAR=1X;DP=234;DPB=234;DPRA=0;EPP=94.2121;EPPR=419.933;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.953125;PAO=0;PQA=0;PQR=0;PRO=0;QA=1636;QR=7247;RO=192;RPL=0;RPP=94.2121;RPPR=419.933;RPR=42;RUN=1;SAF=42;SAP=94.2121;SAR=0;SRF=192;SRP=419.933;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:76:61,15:61:2263:15:585:-30.1138,0,-180.99 0/1:91:70,21:70:2656:21:821:-46.817,0,-211.833 0/0:45:43,2:43:1635:2:75:0,-6.42625,-140.29 0/1:22:18,4:18:693:4:155:-7.70261,0,-56.0777 dDocent_Contig_2556 130 . A G 91.1116 . AB=0.109091;ABP=149.012;AC=2;AF=0.25;AN=8;AO=12;CIGAR=1X;DP=138;DPB=138;DPRA=3.92857;EPP=29.068;EPPR=274.444;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=485;QR=4444;RO=125;RPL=0;RPP=29.068;RPPR=274.444;RPR=12;RUN=1;SAF=0;SAP=29.068;SAR=12;SRF=0;SRP=274.444;SRR=125;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:55:48,7:48:1741:7:280:-9.01255,0,-140.387 0/1:55:50,5:50:1740:5:205:-2.27836,0,-140.293 0/0:12:11,0:11:418:0:0:0,-3.31133,-37.5638 0/0:16:16,0:16:545:0:0:0,-4.81648,-49.3596 dDocent_Contig_2557 136 . T C 5151.26 . AB=0.585915;ABP=25.771;AC=4;AF=0.5;AN=8;AO=208;CIGAR=1X;DP=355;DPB=355;DPRA=0;EPP=454.677;EPPR=322.217;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6954;QR=5071;RO=147;RPL=0;RPP=454.677;RPPR=322.217;RPR=208;RUN=1;SAF=0;SAP=454.677;SAR=208;SRF=0;SRP=322.217;SRR=147;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:130:39,91:39:1393:91:3052:-235.787,0,-86.5157 0/1:113:69,44:69:2338:44:1453:-97.0402,0,-176.665 0/1:70:30,40:30:1024:40:1328:-98.7391,0,-71.3899 0/1:42:9,33:9:316:33:1121:-88.5494,0,-16.1361 dDocent_Contig_2558 123 . G T 337.349 . AB=0.176;ABP=116.987;AC=1;AF=0.125;AN=8;AO=23;CIGAR=1X3M2X;DP=221;DPB=221;DPRA=0;EPP=52.9542;EPPR=398.218;GTI=0;LEN=1;MEANALT=3;MQM=36.913;MQMR=55.1099;NS=4;NUMALT=2;ODDS=1.38778e-17;PAIRED=0;PAIREDR=0.467033;PAO=0;PQA=0;PQR=0;PRO=0;QA=859;QR=6366;RO=182;RPL=0;RPP=52.9542;RPPR=398.218;RPR=23;RUN=1;SAF=0;SAP=52.9542;SAR=23;SRF=0;SRP=398.218;SRR=182;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:101:74,19,3:74:2588:19,3:710,105:-30.0812,0,-199.674,-43.8118,-196.85,-248.283 0|0:65:63,1,0:63:2211:1,0:38,0:0,-16.0321,-192.991,-18.9649,-193.292,-196.093 0|0:31:27,0,4:27:926:0,4:0,144:-3.98169,-12.1095,-83.4976,0,-71.7438,-70.5397 0|0:24:18,3,3:18:641:3,3:111,106:-3.22159,-0.408903,-44.2448,0,-36.5089,-43.8484 dDocent_Contig_2559 90 . G A 5299.35 . AB=0.757576;ABP=98.0945;AC=5;AF=0.625;AN=8;AO=195;CIGAR=1X;DP=237;DPB=237;DPRA=0;EPP=426.447;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6539;QR=1373;RO=42;RPL=195;RPP=426.447;RPPR=94.2121;RPR=0;RUN=1;SAF=195;SAP=426.447;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:72:2,70:2:68:70:2327:-203.232,-15.2163,0 0/1:62:13,49:13:437:49:1663:-131.294,0,-20.9895 0/1:46:18,28:18:590:28:952:-72.1433,0,-39.5609 0/1:57:9,48:9:278:48:1597:-126.858,0,-8.16327 dDocent_Contig_2560 25 . C T 2995.01 . AB=0.356913;ABP=58.3165;AC=4;AF=0.5;AN=8;AO=111;CIGAR=1X;DP=311;DPB=311;DPRA=0;EPP=244.044;EPPR=437.305;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4411;QR=8015;RO=200;RPL=0;RPP=244.044;RPPR=437.305;RPR=111;RUN=1;SAF=111;SAP=244.044;SAR=0;SRF=200;SRP=437.305;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:98:80,18:80:3190:18:702:-34.0049,0,-257.662 0/1:108:63,45:63:2533:45:1814:-130.957,0,-195.593 0/1:69:41,28:41:1649:28:1107:-79.1379,0,-127.861 0/1:36:16,20:16:643:20:788:-60.3907,0,-47.365 dDocent_Contig_2562 7 . A G 2855.74 . AB=0.294444;ABP=201.193;AC=3;AF=0.375;AN=8;AO=168;CIGAR=1X;DP=620;DPB=620;DPRA=0;EPP=367.818;EPPR=978.001;GTI=0;LEN=1;MEANALT=1.75;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5248;QR=16992;RO=449;RPL=0;RPP=367.818;RPPR=978.001;RPR=168;RUN=1;SAF=168;SAP=367.818;SAR=0;SRF=449;SRP=978.001;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:235:161,73:161:6081:73:2377:-143.319,0,-476.419 0/1:188:138,49:138:5232:49:1534:-81.8989,0,-414.497 0/1:117:79,37:79:2979:37:1097:-63.9475,0,-233.248 0/0:80:71,9:71:2700:9:240:0,-2.22668,-221.339 dDocent_Contig_2563 171 . C A 195.767 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=6;CIGAR=1X1M1X;DP=6;DPB=7.33333;DPRA=0;EPP=16.0391;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=47;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=208;QR=0;RO=0;RPL=6;RPP=16.0391;RPPR=0;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. 1|1:3:0,3:0:0:3:105:-9.72562,-0.90309,0 .:.:.:.:.:.:.:. 1|1:3:0,3:0:0:3:103:-9.54793,-0.90309,0 dDocent_Contig_2564 138 . C A 2634.01 . AB=0.69403;ABP=46.8287;AC=4;AF=0.5;AN=8;AO=93;CIGAR=1X;DP=134;DPB=134;DPRA=0;EPP=187.959;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=59.8925;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=0.956989;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3416;QR=1462;RO=41;RPL=0;RPP=204.957;RPPR=92.0407;RPR=93;RUN=1;SAF=2;SAP=187.959;SAR=91;SRF=0;SRP=92.0407;SRR=41;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:46:15,31:15:546:31:1134:-88.5027,0,-35.6301 0/1:34:19,15:19:657:15:526:-37.4238,0,-49.2121 0/1:36:5,31:5:185:31:1171:-94.8391,0,-6.17293 0/1:18:2,16:2:74:16:585:-47.5629,0,-1.60734 dDocent_Contig_2565 12 . G A 5535.63 . AB=0.8;ABP=46.0055;AC=7;AF=0.875;AN=8;AO=169;CIGAR=1X;DP=186;DPB=186;DPRA=0;EPP=369.989;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6567;QR=657;RO=17;RPL=0;RPP=369.989;RPPR=39.9253;RPR=169;RUN=1;SAF=169;SAP=369.989;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:55:11,44:11:427:44:1706:-137.216,0,-22.2242 1/1:77:6,71:6:230:71:2763:-227.732,-2.11229,0 1/1:31:0,31:0:0:31:1199:-108.189,-9.33193,0 1/1:23:0,23:0:0:23:899:-81.2206,-6.92369,0 dDocent_Contig_2566 30 . C T 141.245 . AB=0.103604;ABP=305.999;AC=2;AF=0.25;AN=8;AO=24;CIGAR=1X;DP=416;DPB=416;DPRA=0.872464;EPP=55.1256;EPPR=854.227;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=0.97449;PAO=0;PQA=0;PQR=0;PRO=0;QA=957;QR=15460;RO=392;RPL=0;RPP=55.1256;RPPR=854.227;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=392;SRP=854.227;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:155:139,16:139:5499:16:635:-10.8251,0,-448.082 0/0:115:115,0:115:4566:0:0:0,-34.6184,-410.873 0/0:79:78,1:78:3055:1:41:0,-19.6868,-270.942 0/1:67:60,7:60:2340:7:281:-5.49317,0,-190.597 dDocent_Contig_2568 8 . G C 1670.29 . AB=0.368421;ABP=34.4395;AC=4;AF=0.5;AN=8;AO=77;CIGAR=1X;DP=209;DPB=209;DPRA=0;EPP=170.214;EPPR=289.645;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=0.984848;PAO=0;PQA=0;PQR=0;PRO=0;QA=2597;QR=4529;RO=132;RPL=0;RPP=170.214;RPPR=289.645;RPR=77;RUN=1;SAF=77;SAP=170.214;SAR=0;SRF=132;SRP=289.645;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:54:30,24:30:1090:24:781:-54.3315,0,-82.1449 0/1:42:33,9:33:1176:9:304:-15.0377,0,-93.4857 0/1:64:37,27:37:1247:27:984:-69.596,0,-93.2381 0/1:49:32,17:32:1016:17:528:-33.0531,0,-76.9649 dDocent_Contig_2569 190 . T C 47.4972 . AB=0.113636;ABP=117.111;AC=2;AF=0.25;AN=8;AO=10;CIGAR=1X;DP=172;DPB=172;DPRA=1.04762;EPP=24.725;EPPR=354.789;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=365;QR=6405;RO=162;RPL=10;RPP=24.725;RPPR=354.789;RPR=0;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=354.789;SRR=162;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:40:40,0:40:1571:0:0:0,-12.0412,-141.618 0/1:52:46,6:46:1802:6:234:-5.77287,0,-146.738 0/1:36:32,4:32:1269:4:131:-1.2674,0,-103.638 0/0:44:44,0:44:1763:0:0:0,-13.2453,-158.887 dDocent_Contig_2570 18 . A G 133.05 . AB=0.166667;ABP=49.335;AC=2;AF=0.25;AN=8;AO=8;CIGAR=1X;DP=82;DPB=82;DPRA=1.41176;EPP=20.3821;EPPR=163.699;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=324;QR=2908;RO=74;RPL=0;RPP=20.3821;RPPR=163.699;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=74;SRP=163.699;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:24,6:24:938:6:242:-13.126,0,-75.6909 0/0:20:20,0:20:788:0:0:0,-6.0206,-71.2387 0/1:18:16,2:16:625:2:82:-2.36114,0,-51.1611 0/0:14:14,0:14:557:0:0:0,-4.21442,-50.4701 dDocent_Contig_2571 11 . T A 2409.13 . AB=0.260341;ABP=208.053;AC=4;AF=0.5;AN=8;AO=107;CIGAR=1X;DP=411;DPB=411;DPRA=0;EPP=235.358;EPPR=663.138;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.986842;PAO=0;PQA=0;PQR=0;PRO=0;QA=4094;QR=11777;RO=304;RPL=0;RPP=235.358;RPPR=663.138;RPR=107;RUN=1;SAF=107;SAP=235.358;SAR=0;SRF=304;SRP=663.138;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:127:87,40:87:3285:40:1517:-98.5486,0,-257.527 0/1:128:102,26:102:3973:26:999:-51.672,0,-319.055 0/1:82:62,20:62:2422:20:735:-41.7739,0,-193.463 0/1:74:53,21:53:2097:21:843:-53.908,0,-166.65 dDocent_Contig_2572 13 . T C 2215.38 . AB=0.301695;ABP=103.774;AC=4;AF=0.5;AN=8;AO=89;CIGAR=1X;DP=295;DPB=295;DPRA=0;EPP=196.271;EPPR=448.162;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3490;QR=7858;RO=205;RPL=0;RPP=196.271;RPPR=448.162;RPR=89;RUN=1;SAF=89;SAP=196.271;SAR=0;SRF=205;SRP=448.162;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:78:50,28:50:1905:28:1111:-76.7977,0,-148.19 0/1:64:50,14:50:1908:14:535:-29.2211,0,-152.663 0/1:105:71,33:71:2728:33:1297:-85.3849,0,-214.055 0/1:48:34,14:34:1317:14:547:-35.1239,0,-104.356 dDocent_Contig_2573 119 . T C 532.159 . AB=0.163717;ABP=225;AC=1;AF=0.125;AN=8;AO=46;CIGAR=1X;DP=1081;DPB=1081;DPRA=1.51453;EPP=4.70971;EPPR=56.0509;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.0869565;PAIREDR=0.135266;PAO=0;PQA=0;PQR=0;PRO=0;QA=1685;QR=38291;RO=1035;RPL=46;RPP=102.898;RPPR=2250.48;RPR=0;RUN=1;SAF=20;SAP=4.70971;SAR=26;SRF=438;SRP=56.0509;SRR=597;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:226:189,37:189:6933:37:1353:-54.0118,0,-555.823 0/0:195:195,0:195:7189:0:0:0,-58.7008,-646.836 0/0:326:319,7:319:11682:7:265:0,-73.9324,-1026.71 0/0:334:332,2:332:12487:2:67:0,-94.181,-1116.82 dDocent_Contig_2574 121 . A G 544.343 . AB=0.316456;ABP=26.1269;AC=3;AF=0.375;AN=8;AO=26;CIGAR=5M1X;DP=91;DPB=89.6667;DPRA=0;EPP=59.4686;EPPR=126.784;GTI=0;LEN=1;MEANALT=1.75;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=885;QR=1920;RO=57;RPL=0;RPP=59.4686;RPPR=126.784;RPR=26;RUN=1;SAF=0;SAP=59.4686;SAR=26;SRF=0;SRP=126.784;SRR=57;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:41:21,3,17:21:707:3,17:105,581:-40.8257,-38.6029,-94.9836,0,-48.7301,-52.1575 0|1:30:20,3,7:20:659:3,7:104,235:-13.007,-10.5709,-62.9337,0,-44.7999,-51.1484 0|1:8:5,2,1:5:175:2,1:70,35:-4.19032,0,-13.6366,-2.84774,-11.3909,-16.7854 0|0:12:11,0,1:11:379:0,1:0,34:0,-3.31133,-34.102,-0.213449,-31.3444,-31.0434 dDocent_Contig_2575 18 . T C 421.02 . AB=0.347826;ABP=12.2627;AC=2;AF=0.25;AN=8;AO=16;CIGAR=1M1D1X1M1X;DP=125;DPB=121.8;DPRA=0.582278;EPP=37.7539;EPPR=237.529;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=638;QR=4229;RO=108;RPL=0;RPP=37.7539;RPPR=237.529;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=108;SRP=237.529;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:50:50,0:50:1954:0:0:0,-15.0515,-176.081 0|1:31:19,12:19:747:12:484:-34.5795,0,-58.2268 0|0:29:28,0:28:1098:0:0:0,-8.42884,-98.9401 0|1:15:11,4:11:430:4:154:-9.71634,0,-34.5397 dDocent_Contig_2577 31 . G A 13466 . AB=0.899791;ABP=668.002;AC=1;AF=0.125;AN=8;AO=432;CIGAR=1X;DP=744;DPB=744;DPRA=3.30058;EPP=941.086;EPPR=680.51;GTI=0;LEN=1;MEANALT=1;MQM=59.9167;MQMR=60;NS=4;NUMALT=1;ODDS=2.77556e-17;PAIRED=0;PAIREDR=0.929487;PAO=0;PQA=0;PQR=0;PRO=0;QA=16616;QR=12255;RO=312;RPL=0;RPP=941.086;RPPR=680.51;RPR=432;RUN=1;SAF=432;SAP=941.086;SAR=0;SRF=312;SRP=680.51;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:90:90,0:90:3532:0:0:0,-27.0927,-317.929 0/0:92:91,1:91:3566:1:24:0,-25.2949,-318.576 0/0:83:83,0:83:3289:0:0:0,-24.9855,-296.081 0/1:479:48,431:48:1868:431:16592:-1347.7,0,-24.1441 dDocent_Contig_2578 55 . G A 96.2413 . AB=0.217391;ABP=18.9659;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=70;DPB=70;DPRA=1.46809;EPP=13.8677;EPPR=144.156;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=192;QR=2510;RO=65;RPL=5;RPP=13.8677;RPPR=144.156;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=65;SRP=144.156;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:10:10,0:10:373:0:0:0,-3.0103,-33.9104 0/1:23:18,5:18:716:5:192:-10.721,0,-57.843 0/0:28:28,0:28:1090:0:0:0,-8.42884,-98.3887 0/0:9:9,0:9:331:0:0:0,-2.70927,-30.1342 dDocent_Contig_2579 21 . A G 3543.71 . AB=0.362117;ABP=62.2933;AC=4;AF=0.5;AN=8;AO=130;CIGAR=1X;DP=359;DPB=359;DPRA=0;EPP=285.302;EPPR=500.277;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.9869;PAO=0;PQA=0;PQR=0;PRO=0;QA=5182;QR=9129;RO=229;RPL=0;RPP=285.302;RPPR=500.277;RPR=130;RUN=1;SAF=130;SAP=285.302;SAR=0;SRF=229;SRP=500.277;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:135:69,66:69:2715:66:2593:-192.855,0,-203.829 0/1:100:73,27:73:2939:27:1091:-68.3709,0,-234.495 0/1:67:45,22:45:1809:22:888:-60.0565,0,-142.85 0/1:57:42,15:42:1666:15:610:-38.0785,0,-133.008 dDocent_Contig_2580 63 . T C 73.1631 . AB=0.122807;ABP=73.4498;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=258;DPB=258;DPRA=0.850746;EPP=18.2106;EPPR=548.05;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=280;QR=9936;RO=251;RPL=7;RPP=18.2106;RPPR=548.05;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=251;SRP=548.05;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:79:79,0:79:3137:0:0:0,-23.7814,-282.41 0/0:79:79,0:79:3119:0:0:0,-23.7814,-280.787 0/1:57:50,7:50:1989:7:280:-8.41322,0,-162.043 0/0:43:43,0:43:1691:0:0:0,-12.9443,-152.41 dDocent_Contig_2581 12 . C T 7843.77 . AB=0.526523;ABP=6.12033;AC=4;AF=0.5;AN=8;AO=268;CIGAR=1X;DP=509;DPB=509;DPRA=0;EPP=584.965;EPPR=526.335;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.995851;PAO=0;PQA=0;PQR=0;PRO=0;QA=10467;QR=9467;RO=241;RPL=0;RPP=584.965;RPPR=526.335;RPR=268;RUN=1;SAF=268;SAP=584.965;SAR=0;SRF=241;SRP=526.335;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:203:100,103:100:3901:103:4056:-303.926,0,-289.984 0/1:118:39,79:39:1535:79:3068:-240.697,0,-102.867 0/1:128:78,50:78:3092:50:1935:-135.826,0,-239.84 0/1:60:24,36:24:939:36:1408:-108.917,0,-66.7491 dDocent_Contig_2582 71 . A C 301.673 . AB=0.219178;ABP=53.0137;AC=3;AF=0.375;AN=8;AO=16;CIGAR=1X;DP=80;DPB=80;DPRA=3.47619;EPP=37.7539;EPPR=141.985;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=607;QR=2493;RO=64;RPL=16;RPP=37.7539;RPPR=141.985;RPR=0;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=64;SRP=141.985;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:23,4:23:906:4:160:-6.65562,0,-73.7176 0/1:28:19,9:19:733:9:325:-21.1494,0,-57.8594 0/1:18:15,3:15:584:3:122:-5.95395,0,-47.4748 0/0:7:7,0:7:270:0:0:0,-2.10721,-24.6614 dDocent_Contig_2583 8 . G A 9103.89 . AB=0.242857;ABP=445.246;AC=5;AF=0.625;AN=8;AO=187;CIGAR=1M1X;DP=770;DPB=934.5;DPRA=0;EPP=409.076;EPPR=502.449;GTI=0;LEN=1;MEANALT=4.5;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=1.11022e-16;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6179;QR=7485;RO=230;RPL=0;RPP=409.076;RPPR=502.449;RPR=187;RUN=1;SAF=187;SAP=409.076;SAR=0;SRF=230;SRP=502.449;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:247:65,82,90:65:2200:82,90:2879,2928:-272.665,-57.9539,-211.609,-55.9451,0,-207.184 0|1:215:73,95,40:73:2313:95,40:3281,1334:-244.56,0,-157.501,-158.582,-78.1364,-332.632 0|1:193:50,101,36:50:1650:101,36:3486,1205:-268.107,0,-102.975,-185.611,-35.8251,-308.146 0|1:115:42,51,21:42:1322:51,21:1757,712:-130.047,0,-90.915,-84.9706,-48.5382,-184.917 dDocent_Contig_2584 37 . G A 1579.46 . AB=0.321053;ABP=55.8571;AC=4;AF=0.5;AN=8;AO=61;CIGAR=1X;DP=190;DPB=190;DPRA=0;EPP=135.47;EPPR=283.13;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.984496;PAO=0;PQA=0;PQR=0;PRO=0;QA=2431;QR=5181;RO=129;RPL=0;RPP=135.47;RPPR=283.13;RPR=61;RUN=1;SAF=61;SAP=135.47;SAR=0;SRF=129;SRP=283.13;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:66:44,22:44:1757:22:855:-57.3881,0,-138.481 0/1:52:34,18:34:1364:18:733:-50.6401,0,-107.36 0/1:47:40,7:40:1612:7:277:-11.1508,0,-131.161 0/1:25:11,14:11:448:14:566:-43.7565,0,-33.1502 dDocent_Contig_2585 140 . G T 21303 . AB=0.695833;ABP=162.903;AC=6;AF=0.75;AN=8;AO=656;CIGAR=2X;DP=814;DPB=814;DPRA=0;EPP=1418.82;EPPR=318.372;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.92378;PAIREDR=0.917197;PAO=0;PQA=0;PQR=0;PRO=0;QA=25799;QR=6250;RO=157;RPL=655;RPP=1418.82;RPPR=318.372;RPR=1;RUN=1;SAF=0;SAP=1427.5;SAR=656;SRF=0;SRP=343.931;SRR=157;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:242:119,123:119:4723:123:4789:-358.115,0,-352.143 1|1:151:0,151:0:0:151:5971:-537.221,-45.4555,0 0|1:238:26,211:26:1039:211:8285:-673.83,0,-22.3692 1|1:183:12,171:12:488:171:6754:-563.332,-10.8176,0 dDocent_Contig_2586 44 . C T 3043.98 . AB=0.180667;ABP=772.709;AC=4;AF=0.5;AN=8;AO=157;CIGAR=1X3M1X;DP=869;DPB=869;DPRA=0;EPP=343.931;EPPR=113.487;GTI=0;LEN=1;MEANALT=2.75;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6244;QR=26882;RO=680;RPL=157;RPP=343.931;RPPR=113.487;RPR=0;RUN=1;SAF=157;SAP=343.931;SAR=0;SRF=680;SRP=1479.61;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:362:304,49,8:304:12023:49,8:1952,327:-69.2184,0,-974.649,-133.746,-962.416,-1120.75 0|1:254:178,75,1:178:7009:75,1:2978,41:-191.565,0,-553.969,-241.764,-573.162,-818.023 0|1:135:104,17,13:104:4158:17,13:677,516:-24.4472,0,-337.393,-13.2769,-300.036,-351.87 0|1:118:94,16,7:94:3692:16,7:637,276:-24.1573,0,-298.821,-29.7475,-280.93,-331.276 dDocent_Contig_2587 27 . C T 122.588 . AB=0.189189;ABP=34.0565;AC=2;AF=0.25;AN=8;AO=7;CIGAR=1X;DP=182;DPB=182;DPRA=0.255172;EPP=5.80219;EPPR=380.846;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.428571;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=278;QR=6933;RO=174;RPL=0;RPP=18.2106;RPPR=380.846;RPR=7;RUN=1;SAF=5;SAP=5.80219;SAR=2;SRF=174;SRP=380.846;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:56:55,0:55:2192:0:0:0,-16.5566,-197.074 0/0:89:89,0:89:3544:0:0:0,-26.7917,-319.007 0/1:17:12,5:12:479:5:200:-13.2618,0,-38.3428 0/1:20:18,2:18:718:2:78:-1.3827,0,-58.9269 dDocent_Contig_2588 43 . T A 7214.83 . AB=0.642857;ABP=62.5707;AC=5;AF=0.625;AN=8;AO=216;CIGAR=1X3M;DP=336;DPB=336;DPRA=0;EPP=472.048;EPPR=194.462;GTI=0;LEN=1;MEANALT=2.25;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.958333;PAO=0;PQA=0;PQR=0;PRO=0;QA=8569;QR=3793;RO=96;RPL=0;RPP=472.048;RPPR=162.614;RPR=216;RUN=1;SAF=216;SAP=472.048;SAR=0;SRF=92;SRP=178.176;SRR=4;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:76:0,15,61:0:0:15,61:600,2415:-248.563,-199.138,-194.623,-49.8236,0,-31.4608 0|1:67:46,5,15:46:1820:5,15:203,591:-34.7725,-31.8738,-180.152,0,-133.037,-145.265 0|1:90:24,0,65:24:947:0,65:0,2581:-205.47,-212.694,-290.611,0,-78.1414,-58.5745 0|1:103:26,2,75:26:1026:2,75:82,2982:-237.668,-238.726,-322.542,0,-77.635,-61.827 dDocent_Contig_2589 49 . C T 54234.9 . AB=0.887988;ABP=1777.33;AC=5;AF=0.625;AN=8;AO=1665;CIGAR=1X;DP=1817;DPB=1817;DPRA=0;EPP=3618.51;EPPR=326.56;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=64888;QR=5948;RO=149;RPL=0;RPP=3618.51;RPPR=326.56;RPR=1665;RUN=1;SAF=1665;SAP=3618.51;SAR=0;SRF=149;SRP=326.56;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:512:72,438:72:2858:438:17099:-1383.8,0,-103.396 0/1:370:33,336:33:1318:336:13075:-1064.43,0,-7.40277 0/1:475:44,431:44:1772:431:16783:-1366.33,0,-16.7035 1/1:460:0,460:0:0:460:17931:-1612.52,-138.474,0 dDocent_Contig_2590 7 . G T 828.819 . AB=0.142857;ABP=258.934;AC=1;AF=0.125;AN=8;AO=49;CIGAR=1X4M;DP=597;DPB=597;DPRA=0;EPP=109.412;EPPR=1075.72;GTI=0;LEN=1;MEANALT=3.5;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1441;QR=17388;RO=494;RPL=0;RPP=109.412;RPPR=1075.72;RPR=49;RUN=1;SAF=49;SAP=109.412;SAR=0;SRF=494;SRP=1075.72;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:146:136,0,7:136:4800:0,7:0,139:0,-40.9401,-431.841,-30.639,-421.452,-419.344 0|1:231:153,41,33:153:5385:41,33:1583,1113:-83.9788,0,-425.984,-39.8898,-348.164,-468.247 0|0:86:79,4,3:79:2724:4,3:156,89:0,-10.9046,-230.994,-16.7206,-225.099,-237.022 0|0:134:126,0,6:126:4479:0,6:0,100:0,-37.9298,-403.023,-30.7903,-395.841,-394.035 dDocent_Contig_2591 21 . G A 134.77 . AB=0.121212;ABP=126.389;AC=2;AF=0.25;AN=8;AO=12;CIGAR=1X;DP=179;DPB=179;DPRA=1.2375;EPP=29.068;EPPR=365.646;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.833333;PAIREDR=0.976048;PAO=0;PQA=0;PQR=0;PRO=0;QA=486;QR=6555;RO=167;RPL=0;RPP=29.068;RPPR=365.646;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=167;SRP=365.646;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:39:39,0:39:1565:0:0:0,-11.7402,-141.087 0/1:50:42,8:42:1603:8:325:-14.5681,0,-129.452 0/1:49:45,4:45:1763:4:161:-0.124428,0,-144.144 0/0:41:41,0:41:1624:0:0:0,-12.3422,-146.393 dDocent_Contig_2592 107 . N A 104.503 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=113;QR=0;RO=0;RPL=0;RPP=11.6962;RPPR=0;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:4:0,4:0:0:4:113:-10.4492,-1.20412,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_2593 107 . N G 202.03 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=7;CIGAR=1X;DP=7;DPB=7;DPRA=0;EPP=18.2106;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=216;QR=0;RO=0;RPL=0;RPP=18.2106;RPPR=0;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1:0,1:0:0:1:10:-0.999996,-0.30103,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:6:0,6:0:0:6:206:-18.8766,-1.80618,0 dDocent_Contig_2594 7 . G T 2412.66 . AB=0;ABP=0;AC=0;AF=0;AN=8;AO=3;CIGAR=1X1M1X;DP=102;DPB=102;DPRA=0;EPP=9.52472;EPPR=39.9253;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=78;QR=546;RO=17;RPL=0;RPP=9.52472;RPPR=39.9253;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:30:0,2,28:0:0:2,28:52,1018:-91.6537,-87.5829,-86.9809,-8.42884,-4.09123,0 0|0:27:10,0,17:10:310:0,17:0,582:-44.5573,-47.5676,-72.4361,0,-25.1903,-20.0728 0|0:28:1,1,26:1:38:1,26:26,872:-75.0296,-73.2946,-76.1117,-4.6504,-5.84784,0 0|0:17:6,0,11:6:198:0,11:0,411:-32.2192,-34.0254,-50.0139,0,-16.3337,-13.0223 dDocent_Contig_2595 9 . C T 2827.84 . AB=0.530806;ABP=4.74954;AC=4;AF=0.5;AN=8;AO=112;CIGAR=1M1X;DP=211;DPB=211;DPRA=0;EPP=246.215;EPPR=215.815;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.991071;PAIREDR=0.979592;PAO=0;PQA=0;PQR=0;PRO=0;QA=3891;QR=3379;RO=98;RPL=0;RPP=246.215;RPPR=215.815;RPR=112;RUN=1;SAF=112;SAP=246.215;SAR=0;SRF=98;SRP=215.815;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:53:24,28:24:798:28:980:-72.4791,0,-56.093 0|1:62:34,28:34:1126:28:996:-71.2752,0,-82.9487 0|1:47:22,25:22:804:25:891:-66.3379,0,-58.529 0|1:49:18,31:18:651:31:1024:-77.6813,0,-44.1654 dDocent_Contig_2597 98 . N T 146.664 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=5;CIGAR=2X;DP=5;DPB=165;DPRA=0;EPP=13.8677;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=1;PAIREDR=0;PAO=83;PQA=2679;PQR=0;PRO=0;QA=163;QR=0;RO=0;RPL=5;RPP=13.8677;RPPR=0;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:5:0,5:0:0:5:163:-14.6659,-1.50515,0 .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. dDocent_Contig_2598 36 . C G 739.255 . AB=0.326087;ABP=27.1797;AC=4;AF=0.5;AN=8;AO=30;CIGAR=1X2M1X;DP=92;DPB=92;DPRA=0;EPP=68.1545;EPPR=133.299;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.8;PAIREDR=0.916667;PAO=0;PQA=0;PQR=0;PRO=0;QA=1169;QR=2364;RO=60;RPL=0;RPP=68.1545;RPPR=133.299;RPR=30;RUN=1;SAF=30;SAP=68.1545;SAR=0;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:32:16,15:16:619:15:571:-41.9929,0,-46.3095 0|1:19:8,10:8:314:10:399:-30.4517,0,-22.8032 0|1:21:19,2:19:769:2:81:-1.3641,0,-63.2089 0|1:20:17,3:17:662:3:118:-4.98229,0,-53.8902 dDocent_Contig_2599 8 . C T 148.17 . AB=0.25641;ABP=23.1103;AC=1;AF=0.125;AN=8;AO=11;CIGAR=1X;DP=201;DPB=201;DPRA=0.348993;EPP=26.8965;EPPR=415.59;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=341;QR=6501;RO=190;RPL=0;RPP=26.8965;RPPR=415.59;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=190;SRP=415.59;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:63:63,0:63:2126:0:0:0,-18.9649,-191.568 0/0:86:86,0:86:2970:0:0:0,-25.8886,-267.479 0/1:39:29,10:29:1018:10:304:-15.9112,0,-80.1744 0/0:13:12,1:12:387:1:37:0,-0.215561,-31.4369 dDocent_Contig_2600 55 . C A 178.281 . AB=0.1625;ABP=82.1605;AC=1;AF=0.125;AN=8;AO=13;CIGAR=1X;DP=208;DPB=208;DPRA=1.875;EPP=31.2394;EPPR=426.447;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=471;QR=7652;RO=195;RPL=13;RPP=31.2394;RPPR=426.447;RPR=0;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=195;SRP=426.447;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:80:67,13:67:2617:13:471:-18.624,0,-211.577 0/0:74:74,0:74:2927:0:0:0,-22.2762,-263.532 0/0:26:26,0:26:986:0:0:0,-7.82678,-89.0231 0/0:28:28,0:28:1122:0:0:0,-8.42884,-101.26 dDocent_Contig_2601 13 . C G 13375.4 . AB=0.512994;ABP=4.30828;AC=4;AF=0.5;AN=8;AO=454;CIGAR=1X;DP=885;DPB=885;DPRA=0;EPP=988.859;EPPR=938.915;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.99768;PAO=0;PQA=0;PQR=0;PRO=0;QA=17879;QR=17101;RO=431;RPL=0;RPP=988.859;RPPR=938.915;RPR=454;RUN=1;SAF=454;SAP=988.859;SAR=0;SRF=431;SRP=938.915;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:211:128,83:128:5069:83:3294:-233.003,0,-392.581 0/1:178:60,118:60:2366:118:4664:-366.121,0,-159.512 0/1:284:129,155:129:5131:155:6085:-461.956,0,-376.171 0/1:212:114,98:114:4535:98:3836:-281.446,0,-344.267 dDocent_Contig_2602 30 . G A 1365.42 . AB=0.186842;ABP=326.697;AC=3;AF=0.375;AN=8;AO=74;CIGAR=1X;DP=428;DPB=428;DPRA=0;EPP=163.699;EPPR=771.712;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2937;QR=14065;RO=354;RPL=0;RPP=163.699;RPPR=771.712;RPR=74;RUN=1;SAF=74;SAP=163.699;SAR=0;SRF=354;SRP=771.712;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:154:134,20:134:5324:20:796:-25.5991,0,-432.66 0/1:159:127,32:127:5072:32:1280:-67.6044,0,-408.491 0/0:48:45,3:45:1784:3:119:0,-3.35494,-149.682 0/1:67:48,19:48:1885:19:742:-46.9306,0,-149.684 dDocent_Contig_2603 9 . A T 19188.9 . AB=0.373606;ABP=152.317;AC=4;AF=0.5;AN=8;AO=402;CIGAR=1X1M1X;DP=1076;DPB=1076;DPRA=0;EPP=875.942;EPPR=467.705;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.948598;PAO=0;PQA=0;PQR=0;PRO=0;QA=14640;QR=7777;RO=214;RPL=0;RPP=875.942;RPPR=467.705;RPR=402;RUN=1;SAF=402;SAP=875.942;SAR=0;SRF=214;SRP=467.705;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:277:52,94,131:52:1854:94,131:3482,4975:-525.985,-256.802,-379.586,-133.767,0,-245.414 1|0:269:39,94,134:39:1445:94,134:3468,5119:-573.554,-301.723,-391.627,-165.373,0,-243.239 1|0:263:72,104,87:72:2611:104,87:3700,3311:-338.18,-58.3992,-240.219,-88.3265,0,-275.274 1|0:267:51,110,104:51:1867:110,104:3990,4000:-486.164,-175.805,-295.235,-173.17,0,-294.413 dDocent_Contig_2604 9 . T C 14399.4 . AB=0.322466;ABP=464.852;AC=4;AF=0.5;AN=8;AO=544;CIGAR=1X1M1X3M;DP=1687;DPB=1687;DPRA=0;EPP=1184.29;EPPR=1388.41;GTI=0;LEN=1;MEANALT=4.75;MQM=59.9283;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.996324;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=20025;QR=24082;RO=638;RPL=0;RPP=1184.29;RPPR=1388.41;RPR=544;RUN=1;SAF=544;SAP=1184.29;SAR=0;SRF=638;SRP=1388.41;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:498:187,136,174:187:6993:136,174:5068,6416:-468.256,-110.411,-642.052,0,-158.444,-520.2 0|1:488:159,153,162:159:6027:153,162:5724,5957:-439.085,-18.2296,-466.294,0,-25.4051,-445.352 0|1:372:158,86,110:158:5984:86,110:3178,4072:-285.466,-73.1046,-537.78,0,-230.644,-457.452 0|1:329:134,95,98:134:5078:95,98:3551,3580:-252.124,-2.13295,-389.851,0,-125.99,-386.811 dDocent_Contig_2605 9 . T A 1977.95 . AB=0.397129;ABP=22.2211;AC=4;AF=0.5;AN=8;AO=83;CIGAR=1X;DP=209;DPB=209;DPRA=0;EPP=183.243;EPPR=276.616;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2938;QR=4517;RO=126;RPL=0;RPP=183.243;RPPR=276.616;RPR=83;RUN=1;SAF=83;SAP=183.243;SAR=0;SRF=126;SRP=276.616;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:94:50,44:50:1822:44:1511:-107.959,0,-135.938 0/1:45:34,11:34:1224:11:409:-23.6086,0,-96.8976 0/1:33:25,8:25:855:8:302:-17.6024,0,-67.3151 0/1:37:17,20:17:616:20:716:-53.6151,0,-44.6265 dDocent_Contig_2607 36 . T C 124.491 . AB=0.119266;ABP=140.251;AC=2;AF=0.25;AN=8;AO=13;CIGAR=1X;DP=214;DPB=214;DPRA=1.0381;EPP=31.2394;EPPR=439.476;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=519;QR=7791;RO=201;RPL=0;RPP=31.2394;RPPR=439.476;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=201;SRP=439.476;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:42:42,0:42:1622:0:0:0,-12.6433,-146.23 0/0:63:63,0:63:2461:0:0:0,-18.9649,-221.66 0/1:64:56,8:56:2173:8:322:-10.0828,0,-176.502 0/1:45:40,5:40:1535:5:197:-4.56005,0,-124.86 dDocent_Contig_2608 112 . T A 92.2511 . AB=0.238095;ABP=15.5221;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=197;DPB=197;DPRA=0.357955;EPP=13.8677;EPPR=419.933;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=181;QR=6698;RO=192;RPL=0;RPP=13.8677;RPPR=419.933;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=419.933;SRR=192;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:102:102,0:102:3564:0:0:0,-30.7051,-320.963 0/0:51:51,0:51:1777:0:0:0,-15.3525,-160.207 0/0:23:23,0:23:820:0:0:0,-6.92369,-74.1226 0/1:21:16,5:16:537:5:181:-10.322,0,-42.3237 dDocent_Contig_2609 35 . G T 115.122 . AB=0.206897;ABP=24.6501;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=71;DPB=71;DPRA=2.07143;EPP=16.0391;EPPR=144.156;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=233;QR=2551;RO=65;RPL=0;RPP=16.0391;RPPR=144.156;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=65;SRP=144.156;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:14:14,0:14:563:0:0:0,-4.21442,-51.0137 0/0:11:11,0:11:438:0:0:0,-3.31133,-39.7746 0/0:17:17,0:17:652:0:0:0,-5.11751,-59.008 0/1:29:23,6:23:898:6:233:-12.6091,0,-72.3913 dDocent_Contig_2610 187 . C T 35.5254 . AB=0.157895;ABP=22.325;AC=2;AF=0.25;AN=8;AO=3;CIGAR=1X;DP=100;DPB=100;DPRA=0.234568;EPP=9.52472;EPPR=213.643;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=118;QR=3738;RO=97;RPL=3;RPP=9.52472;RPPR=213.643;RPR=0;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=213.643;SRR=97;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:67:67,0:67:2617:0:0:0,-20.169,-235.667 0/1:9:7,2:7:274:2:77:-4.59956,0,-22.3183 0/1:10:9,1:9:347:1:41:-1.08427,0,-28.5732 0/0:14:14,0:14:500:0:0:0,-4.21442,-45.3134 dDocent_Contig_2611 91 . T C 162.77 . AB=0.225;ABP=29.2851;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X;DP=112;DPB=112;DPRA=1.66667;EPP=22.5536;EPPR=226.672;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=323;QR=3611;RO=103;RPL=9;RPP=22.5536;RPPR=226.672;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=103;SRP=226.672;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:25:25,0:25:880:0:0:0,-7.52575,-79.5157 0/1:40:31,9:31:1082:9:323:-17.3739,0,-85.6476 0/0:34:34,0:34:1209:0:0:0,-10.235,-109.117 0/0:13:13,0:13:440:0:0:0,-3.91339,-39.9206 dDocent_Contig_2612 7 . A G 3451.64 . AB=0.687204;ABP=67.2385;AC=4;AF=0.5;AN=8;AO=145;CIGAR=1X;DP=211;DPB=211;DPRA=0;EPP=317.874;EPPR=135.47;GTI=0;LEN=1;MEANALT=1.75;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.931034;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4574;QR=2270;RO=61;RPL=0;RPP=317.874;RPPR=135.47;RPR=145;RUN=1;SAF=145;SAP=317.874;SAR=0;SRF=61;SRP=135.47;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:69:24,42:24:902:42:1324:-99.4218,0,-61.4905 0/1:46:14,31:14:519:31:958:-72.6404,0,-33.1988 0/1:55:10,44:10:364:44:1381:-108.165,0,-16.7167 0/1:41:13,28:13:485:28:911:-69.9265,0,-31.6512 dDocent_Contig_2613 46 . A G 449.933 . AB=0.254902;ABP=56.2327;AC=3;AF=0.375;AN=8;AO=27;CIGAR=1X;DP=120;DPB=120;DPRA=0;EPP=61.6401;EPPR=202.786;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.888889;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=902;QR=3061;RO=92;RPL=0;RPP=61.6401;RPPR=202.786;RPR=27;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=92;SRP=202.786;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:50:41,9:41:1362:9:301:-12.3641,0,-107.82 0/1:35:19,15:19:614:15:494:-34.4528,0,-45.2477 0/0:18:17,1:17:566:1:35:0,-1.91991,-47.7556 0/1:17:15,2:15:519:2:72:-1.71913,0,-41.9212 dDocent_Contig_2614 21 . C T 5232.68 . AB=0.290323;ABP=275.285;AC=3;AF=0.375;AN=8;AO=223;CIGAR=1X;DP=912;DPB=912;DPRA=0;EPP=487.249;EPPR=1499.15;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.995516;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=8873;QR=27235;RO=689;RPL=0;RPP=487.249;RPPR=1499.15;RPR=223;RUN=1;SAF=223;SAP=487.249;SAR=0;SRF=689;SRP=1499.15;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:328:243,85:243:9596:85:3397:-207.041,0,-764.345 0/1:221:137,84:137:5450:84:3332:-233.401,0,-423.817 0/0:199:183,16:183:7265:16:638:0,-2.14899,-595.767 0/1:164:126,38:126:4924:38:1506:-86.4178,0,-393.704 dDocent_Contig_2615 26 . G A 121.065 . AB=0.0978723;ABP=333.083;AC=1;AF=0.125;AN=8;AO=31;CIGAR=1X;DP=815;DPB=815;DPRA=1.07427;EPP=70.3259;EPPR=1705.44;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.998724;PAO=0;PQA=0;PQR=0;PRO=0;QA=1251;QR=30554;RO=784;RPL=0;RPP=70.3259;RPPR=1705.44;RPR=31;RUN=1;SAF=31;SAP=70.3259;SAR=0;SRF=784;SRP=1705.44;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:235:212,23:212:8271:23:926:-12.9024,0,-673.281 0/0:190:184,6:184:7236:6:243:0,-34.9477,-628.685 0/0:197:195,2:195:7591:2:82:0,-51.5232,-675.081 0/0:193:193,0:193:7456:0:0:0,-58.0988,-670.746 dDocent_Contig_2616 113 . C A 3542.99 . AB=0.448795;ABP=10.5712;AC=4;AF=0.5;AN=8;AO=149;CIGAR=1X;DP=332;DPB=332;DPRA=0;EPP=326.56;EPPR=398.218;GTI=0;LEN=1;MEANALT=1.25;MQM=59.8322;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5087;QR=6058;RO=182;RPL=0;RPP=326.56;RPPR=398.218;RPR=149;RUN=1;SAF=0;SAP=326.56;SAR=149;SRF=0;SRP=398.218;SRR=182;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:140:68,72:68:2274:72:2491:-182.308,0,-162.783 0/1:47:32,15:32:1102:15:500:-31.1683,0,-85.3399 0/1:68:29,39:29:904:39:1329:-99.4359,0,-61.1745 0/1:77:53,23:53:1778:23:767:-46.3762,0,-137.347 dDocent_Contig_2617 11 . G A 564.259 . AB=0.210145;ABP=103.716;AC=4;AF=0.5;AN=8;AO=29;CIGAR=2X;DP=138;DPB=138;DPRA=0;EPP=65.983;EPPR=237.529;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1129;QR=3973;RO=108;RPL=0;RPP=65.983;RPPR=237.529;RPR=29;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=108;SRP=237.529;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:44:35,8:35:1315:8:318:-15.6352,0,-105.283 0|1:48:40,8:40:1458:8:310:-13.8129,0,-117.034 0|1:28:19,9:19:697:9:349:-23.3376,0,-54.6202 0|1:18:14,4:14:503:4:152:-8.62993,0,-40.1813 dDocent_Contig_2618 53 . G A 712.109 . AB=0.272;ABP=59.4512;AC=3;AF=0.375;AN=8;AO=37;CIGAR=1X;DP=167;DPB=167;DPRA=0;EPP=83.3548;EPPR=283.13;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1305;QR=4900;RO=129;RPL=37;RPP=83.3548;RPPR=283.13;RPR=0;RUN=1;SAF=37;SAP=83.3548;SAR=0;SRF=129;SRP=283.13;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:42:39,3:39:1490:3:80:0,-5.18006,-126.914 0/1:52:47,5:47:1791:5:175:-0.438364,0,-145.787 0/1:40:29,11:29:1088:11:397:-24.0252,0,-86.1839 0/1:33:14,18:14:531:18:653:-49.3678,0,-38.4003 dDocent_Contig_2619 7 . A G 826.862 . AB=0.259669;ABP=93.8162;AC=3;AF=0.375;AN=8;AO=54;CIGAR=1X1M;DP=249;DPB=249;DPRA=0;EPP=120.27;EPPR=409.076;GTI=0;LEN=1;MEANALT=1.75;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1734;QR=7168;RO=187;RPL=0;RPP=120.27;RPPR=409.076;RPR=54;RUN=1;SAF=54;SAP=120.27;SAR=0;SRF=187;SRP=409.076;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:69:43,0,26:43:1652:0,26:0,848:-55.8281,-68.7724,-204.423,0,-135.999,-128.172 0|1:32:15,6,10:15:561:6,10:201,300:-19.4606,-7.68534,-51.8708,0,-29.7214,-42.9773 0|1:80:68,1,11:68:2610:1,11:39,387:-10.9893,-28.2503,-242.22,0,-211.031,-210.925 0|0:68:61,0,7:61:2345:0,7:0,199:0,-18.3628,-210.97,-2.28194,-195.183,-193.076 dDocent_Contig_2620 97 . C T 39.7502 . AB=0.137931;ABP=69.053;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X;DP=212;DPB=212;DPRA=2.21212;EPP=22.5536;EPPR=443.819;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.333333;PAIREDR=0.995074;PAO=0;PQA=0;PQR=0;PRO=0;QA=276;QR=6672;RO=203;RPL=9;RPP=22.5536;RPPR=443.819;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=203;SRP=443.819;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:88:87,1:87:2859:1:29:0,-23.591,-254.661 0/0:43:43,0:43:1443:0:0:0,-12.9443,-130.165 0/1:58:50,8:50:1645:8:247:-5.07188,0,-130.876 0/0:23:23,0:23:725:0:0:0,-6.92369,-65.5463 dDocent_Contig_2621 9 . G A 140.31 . AB=0.318182;ABP=9.32731;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=87;DPB=87;DPRA=1.01538;EPP=18.2106;EPPR=168.151;GTI=0;LEN=1;MEANALT=1;MQM=59;MQMR=59.8125;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=0;PAIREDR=0.6375;PAO=0;PQA=0;PQR=0;PRO=0;QA=238;QR=2977;RO=80;RPL=0;RPP=18.2106;RPPR=176.728;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=79;SRP=168.151;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:27:27,0:27:998:0:0:0,-8.12781,-90.1283 0/0:21:21,0:21:793:0:0:0,-6.32163,-71.6582 0/1:22:15,7:15:568:7:238:-15.128,0,-44.8379 0/0:17:17,0:17:618:0:0:0,-5.11751,-55.9447 dDocent_Contig_2622 9 . A C 4475.86 . AB=0.168937;ABP=352.393;AC=5;AF=0.625;AN=8;AO=62;CIGAR=1X2M;DP=367;DPB=367;DPRA=0;EPP=137.642;EPPR=307.016;GTI=0;LEN=1;MEANALT=2.25;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=5.55112e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2208;QR=5199;RO=140;RPL=0;RPP=137.642;RPPR=307.016;RPR=62;RUN=1;SAF=62;SAP=137.642;SAR=0;SRF=140;SRP=307.016;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:56:29,0,5,22:29:1114:0,5,22:0,183,784:-55.1528,-63.8827,-155.337,-48.9289,-140.385,-138.88,0,-91.4561,-76.5068,-84.8334 0|1:113:46,33,21,13:46:1727:33,21,13:1224,765,466:-86.2988,0,-131.527,-37.6707,-78.9862,-172.806,-62.1497,-103.465,-141.132,-199.693 0|1:136:52,0,72,12:52:1933:0,72,12:0,2685,424:-204.153,-219.806,-377.987,0,-158.195,-136.521,-185.287,-343.466,-123.676,-339.854 1|1:62:13,0,34,15:13:425:0,34,15:0,1244,534:-106.972,-110.885,-145.191,-9.22813,-43.528,-33.293,-67.3757,-101.678,0,-97.1629 dDocent_Contig_2623 1 . N G 42.7804 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=4.60517;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=45;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:45:-4.27369,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_2624 18 . C T 377.56 . AB=0;ABP=0;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X2M1X3M;DP=269;DPB=269;DPRA=0.955224;EPP=11.6962;EPPR=513.306;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=156;QR=9082;RO=235;RPL=0;RPP=11.6962;RPPR=513.306;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=235;SRP=513.306;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:71:53,17,0:53:2075:17,0:663,0:-38.5519,0,-165.511,-54.5065,-170.629,-225.126 0|0:88:81,6,0:81:3124:6,0:227,0:0,-5.78432,-260.497,-24.3834,-262.304,-280.912 0|0:46:45,0,0:45:1727:0,0:0,0:0,-13.5463,-155.264,-13.5463,-155.264,-155.264 0|0:64:56,4,4:56:2156:4,4:156,156:0,-4.03462,-179.843,-4.0347,-168.224,-179.843 dDocent_Contig_2626 76 . A C 6736.71 . AB=0.0566038;ABP=93.5156;AC=0;AF=0;AN=8;AO=6;CIGAR=3M1X21M;DP=386;DPB=372.68;DPRA=0.691589;EPP=16.0391;EPPR=141.985;GTI=0;LEN=1;MEANALT=8.5;MQM=60;MQMR=60;NS=4;NUMALT=4;ODDS=5.55112e-17;PAIRED=1;PAIREDR=1;PAO=0.2;PQA=7.4;PQR=7.4;PRO=0.2;QA=221;QR=2202;RO=64;RPL=6;RPP=16.0391;RPPR=141.985;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=64;SRP=141.985;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:131:39,47,14,14,0:39:1335:47,14,14,0:1682,506,517,0:-125.449,0,-94.2394,-95.8816,-67.0773,-200.041,-94.8935,-66.0891,-161.961,-199.053,-137.189,-108.388,-204.255,-203.268,-245.561 0|0:107:8,92,2,0,0:8:275:92,2,0,0:3243,74,0,0:-267.042,-5.31113,0,-263.395,-21.6299,-285.126,-269.45,-27.6948,-285.728,-291.783,-269.45,-27.6948,-285.728,-291.783,-291.783 0|0:95:7,71,0,3,3:7:242:71,0,3,3:2481,0,99,110:-201.47,-1.67878,0,-203.577,-21.3731,-223.243,-195.574,-13.3618,-215.239,-214.336,-194.584,-12.3684,-214.25,-206.247,-213.347 0|0:53:10,30,7,1,3:10:350:30,7,1,3:1044,243,36,111:-81.904,0,-19.4629,-65.1586,-8.73185,-91.5317,-81.9763,-25.555,-90.701,-110.155,-75.8307,-19.4065,-84.5557,-101.373,-103.408 dDocent_Contig_2627 18 . G A 48886.2 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=1422;CIGAR=1X;DP=1484;DPB=1484;DPRA=0;EPP=3090.84;EPPR=137.642;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=56824;QR=2454;RO=62;RPL=0;RPP=3090.84;RPPR=137.642;RPR=1422;RUN=1;SAF=1422;SAP=3090.84;SAR=0;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:421:28,393:28:1121:393:15700:-1310.56,-25.5589,0 1/1:355:0,355:0:0:355:14196:-1276.53,-106.866,0 1/1:344:6,338:6:210:338:13509:-1195.57,-84.3224,0 1/1:364:28,336:28:1123:336:13419:-1105.35,-8.22235,0 dDocent_Contig_2628 224 . T C 90.1253 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=2X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=40;MQMR=0;NS=1;NUMALT=1;ODDS=5.29832;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=99;QR=0;RO=0;RPL=3;RPP=9.52472;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. 1|1:3:0,3:0:0:3:99:-9.01037,-0.90309,0 .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. dDocent_Contig_2629 10 . G A 7650.05 . AB=0.862319;ABP=160.363;AC=6;AF=0.75;AN=8;AO=243;CIGAR=2M1X;DP=265;DPB=265;DPRA=0;EPP=530.678;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=9056;QR=693;RO=19;RPL=0;RPP=530.678;RPPR=44.2683;RPR=243;RUN=1;SAF=243;SAP=530.678;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:51:0,51:0:0:51:1908:-171.938,-15.3525,0 1|1:76:2,73:2:77:73:2687:-234.667,-15.6429,0 0|1:74:8,64:8:290:64:2365:-191.014,0,-4.42638 0|1:64:9,55:9:326:55:2096:-169.58,0,-10.4183 dDocent_Contig_2630 7 . A G 12834 . AB=0.474328;ABP=10.0344;AC=4;AF=0.5;AN=8;AO=582;CIGAR=1X;DP=1227;DPB=1227;DPRA=0;EPP=1266.81;EPPR=1364.52;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=5.55112e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=18360;QR=23908;RO=627;RPL=0;RPP=1266.81;RPPR=1364.52;RPR=582;RUN=1;SAF=582;SAP=1266.81;SAR=0;SRF=627;SRP=1364.52;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:389:217,170:217:8221:170:5472:-375.931,0,-623.072 0/1:336:152,177:152:5829:177:5401:-386.999,0,-425.397 0/1:233:121,106:121:4642:106:3383:-236.171,0,-349.36 0/1:269:137,129:137:5216:129:4104:-289.293,0,-389.257 dDocent_Contig_2631 107 . N C 99.7964 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=100;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1:0,1:0:0:1:35:-3.49863,-0.30103,0 ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:65:-6.17345,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_2632 29 . G A 4256.29 . AB=0.582645;ABP=17.3671;AC=4;AF=0.5;AN=8;AO=141;CIGAR=1X;DP=242;DPB=242;DPRA=0;EPP=309.188;EPPR=222.329;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5583;QR=4020;RO=101;RPL=0;RPP=309.188;RPPR=222.329;RPR=141;RUN=1;SAF=141;SAP=309.188;SAR=0;SRF=101;SRP=222.329;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:85:14,71:14:563:71:2799:-226.419,0,-25.4257 0/1:78:42,36:42:1682:36:1452:-107.447,0,-128.121 0/1:46:33,13:33:1300:13:495:-31.0402,0,-103.418 0/1:33:12,21:12:475:21:837:-65.7117,0,-33.1654 dDocent_Contig_2633 209 . N G 70.2834 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=4.60517;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=74;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:74:-7.02402,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_2634 15 . G A 1548.38 . AB=0.244019;ABP=121.963;AC=4;AF=0.5;AN=8;AO=51;CIGAR=1X1M;DP=209;DPB=209;DPRA=0;EPP=113.755;EPPR=257.073;GTI=0;LEN=1;MEANALT=2;MQM=56.8235;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.901961;PAIREDR=0.65812;PAO=0;PQA=0;PQR=0;PRO=0;QA=2040;QR=4661;RO=117;RPL=0;RPP=113.755;RPPR=257.073;RPR=51;RUN=1;SAF=51;SAP=113.755;SAR=0;SRF=117;SRP=257.073;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:60:27,7,26:27:1073:7,26:286,1045:-76.5106,-61.0361,-147.264,0,-64.7238,-80.4989 0|1:50:27,14,9:27:1070:14,9:551,356:-37.1955,0,-83.8543,-16.1807,-58.9268,-101.54 0|1:59:37,12,10:37:1484:12,10:481,401:-28.4892,0,-118.657,-6.58931,-89.2311,-125.848 0|1:40:26,8,6:26:1034:8,6:310,238:-17.6323,0,-82.7233,-5.86364,-65.5402,-89.196 dDocent_Contig_2635 19 . G C 5587.13 . AB=0.0104167;ABP=202.876;AC=0;AF=0;AN=8;AO=3;CIGAR=1M1X4M1X;DP=222;DPB=211.714;DPRA=0;EPP=9.52472;EPPR=59.4686;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=120;QR=1013;RO=26;RPL=0;RPP=9.52472;RPPR=59.4686;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:37:1,2,0,34:1:40:2,0,34:82,0,1315:-114.612,-108.143,-110.837,-114.913,-111.439,-118.208,-6.94324,-3.46027,-10.235,0 0|0:39:7,0,9,23:7:261:0,9,23:0,360,916:-81.6359,-83.7431,-105.1,-54.0877,-75.4433,-72.734,-8.32053,-29.6702,0,-22.7465 0|0:50:9,0,3,38:9:356:0,3,38:0,121,1523:-122.76,-125.47,-154.767,-115.495,-144.793,-143.89,0,-29.293,-19.3168,-17.8538 0|0:96:9,1,6,76:9:356:1,6,76:38,236,2991:-243.297,-242.89,-271.888,-226.595,-252.778,-254.088,0,-26.1846,-9.8897,-6.42216 dDocent_Contig_2636 73 . T A 141.231 . AB=0.216216;ABP=28.8919;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=139;DPB=139;DPRA=1.08824;EPP=20.3821;EPPR=285.302;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=289;QR=4109;RO=130;RPL=8;RPP=20.3821;RPPR=285.302;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=130;SRP=285.302;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:46:46,0:46:1430:0:0:0,-13.8474,-128.978 0/0:22:21,0:21:633:0:0:0,-6.32163,-56.9185 0/1:37:29,8:29:953:8:289:-15.22,0,-74.9352 0/0:34:34,0:34:1093:0:0:0,-10.235,-98.6637 dDocent_Contig_2637 7 . A G 8954.11 . AB=0.432173;ABP=36.2967;AC=4;AF=0.5;AN=8;AO=360;CIGAR=1X3M1X;DP=833;DPB=833;DPRA=0;EPP=784.74;EPPR=995.373;GTI=0;LEN=1;MEANALT=2.75;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.997812;PAO=0;PQA=0;PQR=0;PRO=0;QA=12740;QR=17534;RO=457;RPL=0;RPP=784.74;RPPR=995.373;RPR=360;RUN=1;SAF=360;SAP=784.74;SAR=0;SRF=457;SRP=995.373;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:222:141,77:141:5417:77:2747:-181.473,0,-421.558 0|1:174:76,92:76:2901:92:3297:-246.013,0,-210.372 0|1:228:139,83:139:5337:83:2920:-195.844,0,-413.166 0|1:209:101,108:101:3879:108:3776:-277.071,0,-286.297 dDocent_Contig_2638 25 . G A 2682.38 . AB=0.429204;ABP=12.8492;AC=4;AF=0.5;AN=8;AO=97;CIGAR=1X;DP=226;DPB=226;DPRA=0;EPP=213.643;EPPR=283.13;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3778;QR=5065;RO=129;RPL=0;RPP=213.643;RPPR=283.13;RPR=97;RUN=1;SAF=97;SAP=213.643;SAR=0;SRF=129;SRP=283.13;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:49:25,24:25:976:24:922:-68.5397,0,-73.391 0/1:85:29,56:29:1120:56:2184:-171.175,0,-75.5059 0/1:53:43,10:43:1696:10:395:-19.9538,0,-136.917 0/1:39:32,7:32:1273:7:277:-13.559,0,-103.106 dDocent_Contig_2639 8 . C A 967.694 . AB=0.0701754;ABP=94.4788;AC=0;AF=0;AN=8;AO=4;CIGAR=1X1M2X3M1X;DP=182;DPB=200;DPRA=0;EPP=11.6962;EPPR=283.13;GTI=0;LEN=1;MEANALT=2;MQM=7;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=132;QR=4847;RO=129;RPL=0;RPP=11.6962;RPPR=283.13;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=129;SRP=283.13;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:41:28,0,12:28:1069:0,12:0,457:-29.0489,-37.4777,-125.179,0,-87.702,-84.0896 0|0:33:27,0,6:27:1032:0,6:0,217:-9.94204,-18.0698,-102.764,0,-85.0592,-83.2531 0|0:57:42,4,11:42:1558:4,11:132,373:-17.7936,-29.2003,-155.488,0,-126.459,-124.43 0|0:51:32,0,18:32:1188:0,18:0,667:-44.9745,-54.6075,-151.817,0,-97.2565,-91.838 dDocent_Contig_2640 36 . A G 532.342 . AB=0.38;ABP=9.26414;AC=1;AF=0.125;AN=8;AO=21;CIGAR=1X;DP=154;DPB=154;DPRA=1.61017;EPP=48.6112;EPPR=291.816;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.984962;PAO=0;PQA=0;PQR=0;PRO=0;QA=845;QR=5229;RO=133;RPL=0;RPP=48.6112;RPPR=291.816;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=133;SRP=291.816;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:50:31,19:31:1198:19:764:-54.0301,0,-93.0426 0/0:42:42,0:42:1669:0:0:0,-12.6433,-150.44 0/0:45:43,2:43:1705:2:81:0,-5.86062,-145.995 0/0:17:17,0:17:657:0:0:0,-5.11751,-59.4507 dDocent_Contig_2641 32 . T C 6620.74 . AB=0.772388;ABP=175.723;AC=4;AF=0.5;AN=8;AO=207;CIGAR=1X2M;DP=268;DPB=268;DPRA=0;EPP=452.505;EPPR=113.755;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=8271;QR=2036;RO=51;RPL=0;RPP=452.505;RPPR=113.755;RPR=207;RUN=1;SAF=207;SAP=452.505;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:30:6,0,24:6:236:0,24:0,968:-78.3873,-80.1935,-99.6048,0,-19.8063,-12.5815 0|1:61:14,0,47:14:563:0,47:0,1876:-150.681,-154.896,-201.293,0,-46.7985,-32.6501 0|1:99:13,0,86:13:518:0,86:0,3430:-278.941,-282.855,-325.511,0,-43.054,-17.1655 0|1:78:18,10,50:18:719:10,50:390,1997:-159.053,-132.42,-188.629,0,-27.1754,-44.1742 dDocent_Contig_2642 28 . A G 314.168 . AB=0.217391;ABP=50.8771;AC=2;AF=0.25;AN=8;AO=16;CIGAR=1X;DP=136;DPB=136;DPRA=1;EPP=37.7539;EPPR=263.587;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=637;QR=4731;RO=120;RPL=0;RPP=37.7539;RPPR=263.587;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=120;SRP=263.587;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:34:34,0:34:1342:0:0:0,-10.235,-121.041 0/1:28:25,3:25:986:3:120:-2.75847,0,-80.607 0/1:41:29,12:29:1156:12:476:-30.8475,0,-91.9737 0/0:33:32,1:32:1247:1:41:0,-5.83942,-108.399 dDocent_Contig_2643 22 . A T 358.421 . AB=0.125506;ABP=303.895;AC=2;AF=0.25;AN=8;AO=34;CIGAR=1X;DP=698;DPB=698;DPRA=0.503597;EPP=76.8404;EPPR=1444.87;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.956325;PAO=0;PQA=0;PQR=0;PRO=0;QA=1355;QR=26339;RO=664;RPL=0;RPP=76.8404;RPPR=1444.87;RPR=34;RUN=1;SAF=34;SAP=76.8404;SAR=0;SRF=664;SRP=1444.87;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:278:278,0:278:11041:0:0:0,-83.6863,-992.94 0/0:173:170,3:170:6713:3:123:0,-40.6134,-592.41 0/1:142:130,12:130:5162:12:474:-0.260891,0,-421.701 0/1:105:86,19:86:3423:19:758:-36.9312,0,-276.489 dDocent_Contig_2644 64 . A T 595.576 . AB=0.219178;ABP=103.017;AC=2;AF=0.25;AN=8;AO=34;CIGAR=1X;DP=242;DPB=242;DPRA=1.18868;EPP=76.8404;EPPR=452.505;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.966184;PAO=0;PQA=0;PQR=0;PRO=0;QA=1243;QR=7434;RO=207;RPL=34;RPP=76.8404;RPPR=452.505;RPR=0;RUN=1;SAF=34;SAP=76.8404;SAR=0;SRF=207;SRP=452.505;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:49:32,17:32:1155:17:623:-41.6546,0,-89.5052 0/1:97:82,15:82:2919:15:544:-20.0969,0,-233.723 0/0:43:40,2:40:1450:2:76:0,-5.60849,-123.668 0/0:53:53,0:53:1910:0:0:0,-15.9546,-172.171 dDocent_Contig_2645 31 . A T 101.981 . AB=0.122222;ABP=114.576;AC=2;AF=0.25;AN=8;AO=11;CIGAR=1X;DP=191;DPB=191;DPRA=0.891089;EPP=26.8965;EPPR=393.875;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=430;QR=7069;RO=180;RPL=0;RPP=26.8965;RPPR=393.875;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=180;SRP=393.875;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:60:60,0:60:2364:0:0:0,-18.0618,-212.931 0/1:71:62,9:62:2460:9:350:-10.4847,0,-200.18 0/0:41:41,0:41:1581:0:0:0,-12.3422,-142.521 0/1:19:17,2:17:664:2:80:-1.87222,0,-54.3714 dDocent_Contig_2646 20 . T A 70.8011 . AB=0.3;ABP=6.48466;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=110;DPB=110;DPRA=1.55814;EPP=18.2106;EPPR=226.672;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=279;QR=4118;RO=103;RPL=0;RPP=18.2106;RPPR=226.672;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=103;SRP=226.672;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:57:53,4:53:2118:4:159:0,-2.46675,-176.112 0/1:10:7,3:7:285:3:120:-8.17701,0,-23.0139 0/0:19:19,0:19:770:0:0:0,-5.71957,-69.6195 0/0:24:24,0:24:945:0:0:0,-7.22472,-85.3443 dDocent_Contig_2647 17 . C A 93.3721 . AB=0.333333;ABP=5.9056;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=102;DPB=102;DPRA=0.4;EPP=11.6962;EPPR=215.815;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=152;QR=3877;RO=98;RPL=0;RPP=11.6962;RPPR=215.815;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=98;SRP=215.815;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:34:34,0:34:1363:0:0:0,-10.235,-122.926 0/0:25:25,0:25:1004:0:0:0,-7.52575,-90.6533 0/1:12:8,4:8:313:4:152:-10.4341,0,-24.9169 0/0:31:31,0:31:1197:0:0:0,-9.33193,-107.993 dDocent_Contig_2648 24 . T A 146.801 . AB=0.241379;ABP=19.8579;AC=2;AF=0.25;AN=8;AO=7;CIGAR=1X;DP=60;DPB=60;DPRA=0.935484;EPP=18.2106;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=276;QR=2093;RO=53;RPL=0;RPP=18.2106;RPPR=118.098;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:14:14,0:14:558:0:0:0,-4.21442,-50.5626 0/0:17:17,0:17:650:0:0:0,-5.11751,-58.8238 0/1:16:12,4:12:482:4:157:-9.69195,0,-38.9142 0/1:13:10,3:10:403:3:119:-7.182,0,-32.7161 dDocent_Contig_2649 15 . T G 234.344 . AB=0.178082;ABP=68.7196;AC=2;AF=0.25;AN=8;AO=16;CIGAR=1X;DP=141;DPB=141;DPRA=1.1828;EPP=37.7539;EPPR=274.444;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=627;QR=4979;RO=125;RPL=0;RPP=37.7539;RPPR=274.444;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=125;SRP=274.444;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:31:31,0:31:1205:0:0:0,-9.33193,-108.73 0/1:37:34,3:34:1368:3:121:-0.141876,0,-112.235 0/1:36:26,10:26:1029:10:389:-24.5228,0,-82.0647 0/0:37:34,3:34:1377:3:117:0,-0.228823,-113.274 dDocent_Contig_2650 28 . A G 59.8003 . AB=0.117647;ABP=67.7713;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=263;DPB=263;DPRA=0.721698;EPP=16.0391;EPPR=561.079;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=58.8911;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.906615;PAO=0;PQA=0;PQR=0;PRO=0;QA=245;QR=10292;RO=257;RPL=0;RPP=16.0391;RPPR=561.079;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=257;SRP=561.079;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:119:119,0:119:4753:0:0:0,-35.8226,-424.455 0/0:43:43,0:43:1720:0:0:0,-12.9443,-153.911 0/0:50:50,0:50:2011:0:0:0,-15.0515,-179.028 0/1:51:45,6:45:1808:6:245:-7.07694,0,-146.598 dDocent_Contig_2651 28 . C G 45.6912 . AB=0.0982659;ABP=245.525;AC=1;AF=0.125;AN=8;AO=23;CIGAR=1X;DP=761;DPB=761;DPRA=0.997375;EPP=52.9542;EPPR=1603.39;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=0.998643;PAO=0;PQA=0;PQR=0;PRO=0;QA=875;QR=29515;RO=737;RPL=0;RPP=52.9542;RPPR=1603.39;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=737;SRP=1603.39;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:205:205,0:205:8183:0:0:0,-61.7111,-735.997 0/0:207:201,6:201:8070:6:237:0,-40.6104,-704.133 0/1:173:156,17:156:6256:17:638:-5.66601,0,-510.683 0/0:176:175,0:175:7006:0:0:0,-52.6802,-629.787 dDocent_Contig_2652 14 . T C 2658.03 . AB=0.559748;ABP=7.9405;AC=4;AF=0.5;AN=8;AO=89;CIGAR=2X;DP=159;DPB=159;DPRA=0;EPP=196.271;EPPR=155.013;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.528571;PAO=0;PQA=0;PQR=0;PRO=0;QA=3527;QR=2780;RO=70;RPL=0;RPP=196.271;RPPR=155.013;RPR=89;RUN=1;SAF=89;SAP=196.271;SAR=0;SRF=70;SRP=155.013;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:34:18,16:18:725:16:630:-46.7966,0,-55.3409 0|1:64:24,40:24:944:40:1601:-125.06,0,-65.9996 0|1:24:10,14:10:398:14:553:-42.886,0,-28.9538 0|1:37:18,19:18:713:19:743:-56.0503,0,-53.3569 dDocent_Contig_2653 34 . A T 7911.69 . AB=0.462963;ABP=10.0877;AC=4;AF=0.5;AN=8;AO=275;CIGAR=1X;DP=594;DPB=594;DPRA=0;EPP=600.165;EPPR=695.71;GTI=0;LEN=1;MEANALT=1;MQM=58.6982;MQMR=59.9781;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=10849;QR=12545;RO=319;RPL=0;RPP=600.165;RPPR=695.71;RPR=275;RUN=1;SAF=275;SAP=600.165;SAR=0;SRF=319;SRP=695.71;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:164:115,49:115:4472:49:1965:-127.287,0,-353.071 0/1:111:50,61:50:2001:61:2390:-181.54,0,-146.872 0/1:118:59,59:59:2320:59:2305:-171.736,0,-173.449 0/1:201:95,106:95:3752:106:4189:-315.595,0,-277.199 dDocent_Contig_2654 39 . T A 1461.42 . AB=0.265487;ABP=110.969;AC=3;AF=0.375;AN=8;AO=60;CIGAR=1X;DP=260;DPB=260;DPRA=2.21569;EPP=133.299;EPPR=437.305;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2409;QR=7949;RO=200;RPL=0;RPP=133.299;RPPR=437.305;RPR=60;RUN=1;SAF=60;SAP=133.299;SAR=0;SRF=200;SRP=437.305;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:61:42,19:42:1670:19:769:-51.1677,0,-132.157 0/0:34:34,0:34:1359:0:0:0,-10.235,-122.571 0/1:90:61,29:61:2420:29:1153:-76.9618,0,-190.863 0/1:75:63,12:63:2500:12:487:-21.6038,0,-202.566 dDocent_Contig_2655 7 . T G 22287.1 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=791;CIGAR=1X;DP=817;DPB=817;DPRA=0;EPP=1720.64;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1.75;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=25087;QR=325;RO=23;RPL=0;RPP=1720.64;RPPR=52.9542;RPR=791;RUN=1;SAF=791;SAP=1720.64;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:274:5,268:5:97:268:8292:-737.282,-73.5178,0 1/1:197:3,193:3:33:193:6299:-563.827,-56.0919,0 1/1:157:8,149:8:96:149:4742:-418.133,-38.5018,0 1/1:189:7,181:7:99:181:5754:-508.863,-47.6563,0 dDocent_Contig_2656 13 . A G 89.311 . AB=0.192308;ABP=24.391;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=177;DPB=177;DPRA=0.669811;EPP=20.3821;EPPR=369.989;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.751479;PAO=0;PQA=0;PQR=0;PRO=0;QA=311;QR=6612;RO=169;RPL=0;RPP=20.3821;RPPR=369.989;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=169;SRP=369.989;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:21,5:21:831:5:191:-9.72696,0,-67.2798 0/0:42:42,0:42:1604:0:0:0,-12.6433,-144.586 0/0:45:42,3:42:1650:3:120:0,-2.35866,-137.545 0/0:64:64,0:64:2527:0:0:0,-19.2659,-227.578 dDocent_Contig_2657 107 . N A 8331.57 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=315;CIGAR=1X;DP=317;DPB=317;DPRA=0;EPP=687.024;EPPR=0;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=9244;QR=0;RO=0;RPL=0;RPP=687.024;RPPR=0;RPR=315;RUN=1;SAF=0;SAP=687.024;SAR=315;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:92:0,92:0:0:92:2692:-242.526,-27.6948,0 1/1:90:0,89:0:0:89:2626:-236.243,-26.7917,0 1/1:95:0,94:0:0:94:2814:-253.445,-28.2968,0 1/1:40:0,40:0:0:40:1112:-100.341,-12.0412,0 dDocent_Contig_2658 8 . A G 1774.04 . AB=0.553719;ABP=6.04318;AC=4;AF=0.5;AN=8;AO=67;CIGAR=3X1M1X;DP=121;DPB=121;DPRA=0;EPP=148.499;EPPR=118.098;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2418;QR=1881;RO=53;RPL=0;RPP=148.499;RPPR=118.098;RPR=67;RUN=1;SAF=67;SAP=148.499;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:28:13,15:13:432:15:552:-41.5834,0,-30.7614 0|1:47:20,26:20:721:26:931:-69.8485,0,-50.9707 0|1:19:7,12:7:264:12:447:-34.851,0,-18.399 0|1:27:13,14:13:464:14:488:-36.1103,0,-33.9605 dDocent_Contig_2659 23 . G A 98.9941 . AB=0.166667;ABP=37.7539;AC=2;AF=0.25;AN=8;AO=6;CIGAR=1X;DP=94;DPB=94;DPRA=0.62069;EPP=16.0391;EPPR=191.928;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=246;QR=3466;RO=87;RPL=0;RPP=16.0391;RPPR=191.928;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=87;SRP=191.928;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:18,4:18:723:4:164:-8.52724,0,-58.7702 0/0:43:42,0:42:1672:0:0:0,-12.6433,-150.363 0/1:14:12,2:12:475:2:82:-3.56526,0,-38.8848 0/0:15:15,0:15:596:0:0:0,-4.51545,-53.9762 dDocent_Contig_2660 107 . N A 280.523 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=9;CIGAR=1X;DP=9;DPB=9;DPRA=0;EPP=22.5536;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=9.4572;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=308;QR=0;RO=0;RPL=0;RPP=22.5536;RPPR=0;RPR=9;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:9:0,9:0:0:9:308:-28.0523,-2.70927,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_2661 39 . A T 191.598 . AB=0.123188;ABP=173.203;AC=2;AF=0.25;AN=8;AO=21;CIGAR=1X;DP=239;DPB=239;DPRA=1.29252;EPP=48.6112;EPPR=476.391;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=849;QR=8598;RO=218;RPL=0;RPP=48.6112;RPPR=476.391;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=218;SRP=476.391;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:93:80,13:80:3168:13:528:-19.8713,0,-257.212 0/0:52:48,4:48:1929:4:160:0,-0.870133,-159.026 0/0:49:49,0:49:1886:0:0:0,-14.7505,-169.951 0/1:45:41,4:41:1615:4:161:-1.32855,0,-132.036 dDocent_Contig_2662 109 . G A 860.067 . AB=0.288591;ABP=60.8531;AC=2;AF=0.25;AN=8;AO=50;CIGAR=1X;DP=316;DPB=316;DPRA=0.891473;EPP=111.584;EPPR=580.622;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1715;QR=9106;RO=266;RPL=0;RPP=111.584;RPPR=580.622;RPR=50;RUN=1;SAF=0;SAP=111.584;SAR=50;SRF=0;SRP=580.622;SRR=266;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:113:74,39:74:2525:39:1331:-86.072,0,-193.491 0/0:86:86,0:86:2967:0:0:0,-25.8886,-267.275 0/0:81:74,7:74:2513:7:244:0,-2.08337,-204.126 0/1:36:32,4:32:1101:4:140:-2.10785,0,-88.5606 dDocent_Contig_2664 13 . C A 290.109 . AB=0.107981;ABP=571.651;AC=3;AF=0.375;AN=8;AO=59;CIGAR=1X;DP=604;DPB=604;DPRA=0;EPP=131.127;EPPR=1186.46;GTI=0;LEN=1;MEANALT=1;MQM=59.8983;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2288;QR=21516;RO=545;RPL=0;RPP=131.127;RPPR=1186.46;RPR=59;RUN=1;SAF=59;SAP=131.127;SAR=0;SRF=545;SRP=1186.46;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:161:142,19:142:5627:19:742:-18.6331,0,-457.806 0/0:178:165,13:165:6492:13:512:0,-7.16453,-537.635 0/1:188:169,19:169:6657:19:719:-8.43551,0,-542.291 0/1:77:69,8:69:2740:8:315:-5.53405,0,-223.553 dDocent_Contig_2665 63 . C T 2768.23 . AB=0.422414;ABP=15.1406;AC=4;AF=0.5;AN=8;AO=98;CIGAR=1X;DP=232;DPB=232;DPRA=0;EPP=215.815;EPPR=293.988;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3894;QR=5295;RO=134;RPL=98;RPP=215.815;RPPR=293.988;RPR=0;RUN=1;SAF=98;SAP=215.815;SAR=0;SRF=134;SRP=293.988;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:85:56,29:56:2179:29:1117:-75.2184,0,-170.699 0/1:81:39,42:39:1545:42:1689:-127.851,0,-114.907 0/1:43:23,20:23:930:20:805:-59.8238,0,-71.0585 0/1:23:16,7:16:641:7:283:-18.9193,0,-51.0999 dDocent_Contig_2666 89 . T A 60.8637 . AB=0.133333;ABP=73.0765;AC=2;AF=0.25;AN=8;AO=8;CIGAR=1X1M1X;DP=148;DPB=148;DPRA=0.681818;EPP=20.3821;EPPR=302.673;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=278;QR=4746;RO=138;RPL=8;RPP=20.3821;RPPR=302.673;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=138;SRP=302.673;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:51:44,7:44:1519:7:243:-6.8563,0,-121.652 0|0:56:54,0:54:1845:0:0:0,-16.2556,-165.983 0|0:32:32,0:32:1104:0:0:0,-9.63296,-99.6687 0|1:9:8,1:8:278:1:35:-0.789359,0,-22.6487 dDocent_Contig_2667 18 . C T 222.173 . AB=0.162791;ABP=87.9502;AC=3;AF=0.375;AN=8;AO=17;CIGAR=1X1M6D3M1X;DP=139;DPB=130.5;DPRA=0;EPP=39.9253;EPPR=254.901;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=661;QR=4352;RO=116;RPL=0;RPP=39.9253;RPPR=254.901;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=116;SRP=254.901;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:53:47,3,3:47:1759:3,3:114,33:0,-4.66414,-148.05,-12.2164,-146.902,-155.349 0|1:41:33,7,1:33:1243:7,1:274,11:-12.8421,0,-100.001,-22.1223,-101.427,-123.658 0|1:33:26,6,1:26:979:6,1:233,11:-11.5574,0,-78.6657,-18.7349,-79.7928,-98.6399 0|1:12:10,1,1:10:371:1,1:40,11:-0.429566,0,-30.2926,-2.89568,-29.9283,-32.925 dDocent_Contig_2668 119 . G A 6131.73 . AB=0.532468;ABP=4.42035;AC=6;AF=0.75;AN=8;AO=213;CIGAR=1X;DP=290;DPB=290;DPRA=0;EPP=465.534;EPPR=170.214;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7495;QR=2564;RO=77;RPL=0;RPP=465.534;RPPR=170.214;RPR=213;RUN=1;SAF=0;SAP=465.534;SAR=213;SRF=0;SRP=170.214;SRR=77;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:118:64,54:64:2136:54:1903:-136.026,0,-156.984 1/1:111:4,107:4:129:107:3789:-329.283,-21.4855,0 0/1:36:8,28:8:279:28:950:-74.9671,0,-14.6119 1/1:25:1,24:1:20:24:853:-75.091,-5.52579,0 dDocent_Contig_2671 77 . G A 1676.46 . AB=0.149733;ABP=202.286;AC=1;AF=0.125;AN=8;AO=28;CIGAR=8M1X7M;DP=340;DPB=351.812;DPRA=0;EPP=63.8115;EPPR=376.504;GTI=0;LEN=1;MEANALT=7;MQM=60;MQMR=60;NS=4;NUMALT=5;ODDS=5.55112e-17;PAIRED=1;PAIREDR=1;PAO=0.166667;PQA=0.833333;PQR=0.833333;PRO=0.166667;QA=924;QR=5377;RO=172;RPL=28;RPP=63.8115;RPPR=376.504;RPR=0;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=172;SRP=376.504;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:97:44,5,16,0,10,20:44:1387:5,16,0,10,20:155,486,0,292,667:-40.7577,-41.5611,-151.616,-15.0926,-114.21,-121.835,-54.003,-153.121,-126.652,-165.563,-30.7436,-129.86,-103.391,-142.302,-139.291,0,-99.1267,-72.6566,-111.569,-88.3075,-105.548 0|0:105:61,0,28,3,0,0:61:1919:0,28,3,0,0:0,864,94,0,0:-50.9815,-69.3443,-223.669,0,-154.355,-145.926,-61.7873,-216.113,-146.8,-215.21,-69.3443,-223.669,-154.355,-216.113,-223.669,-69.3443,-223.669,-154.355,-216.113,-223.669,-223.669 0|0:90:37,0,25,8,5,8:37:1157:0,25,8,5,8:0,753,223,119,257:-49.1159,-60.254,-153.239,0,-93.0056,-85.4799,-42.5938,-135.581,-75.3473,-133.173,-51.054,-144.039,-83.8058,-126.381,-142.534,-39.5301,-132.521,-72.2852,-114.863,-123.32,-130.113 0|0:48:30,0,16,1,0,0:30:914:0,16,1,0,0:0,506,33,0,0:-31.7803,-40.8112,-114.023,0,-73.3043,-68.4878,-38.1415,-111.354,-70.6351,-111.053,-40.8112,-114.023,-73.3043,-111.354,-114.023,-40.8112,-114.023,-73.3043,-111.354,-114.023,-114.023 dDocent_Contig_2674 46 . A T 37.5786 . AB=0.105263;ABP=28.7251;AC=1;AF=0.125;AN=8;AO=2;CIGAR=2X;DP=108;DPB=108;DPRA=0.5;EPP=7.35324;EPPR=224.5;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=4039;RO=102;RPL=2;RPP=7.35324;RPPR=224.5;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=102;SRP=224.5;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:19:17,2,0:17:672:2,0:82,0:-2.06011,0,-55.0886,-7.17762,-55.6907,-62.4604 0|0:49:49,0,0:49:1942:0,0:0,0:0,-14.7505,-174.991,-14.7505,-174.991,-174.991 0|0:27:25,0,2:25:1002:0,2:0,82:0,-7.52575,-90.0699,-0.348132,-83.3011,-82.699 0|0:13:11,0,2:11:423:0,2:0,82:-3.86629,-7.17762,-41.8769,0,-35.1048,-34.5028 dDocent_Contig_2675 185 . A T 131.027 . AB=0.140845;ABP=82.5596;AC=2;AF=0.25;AN=8;AO=10;CIGAR=1X;DP=167;DPB=167;DPRA=0.739583;EPP=24.725;EPPR=343.931;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=399;QR=6210;RO=157;RPL=10;RPP=24.725;RPPR=343.931;RPR=0;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=343.931;SRR=157;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:59:53,6:53:2098:6:235:-3.75849,0,-171.243 0/0:73:73,0:73:2872:0:0:0,-21.9752,-258.587 0/0:23:23,0:23:918:0:0:0,-6.92369,-82.9223 0/1:12:8,4:8:322:4:164:-11.5375,0,-25.7349 dDocent_Contig_2676 18 . C T 440.846 . AB=0.201835;ABP=87.1798;AC=3;AF=0.375;AN=8;AO=26;CIGAR=1X;DP=192;DPB=192;DPRA=0;EPP=59.4686;EPPR=363.475;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1044;QR=6599;RO=166;RPL=0;RPP=59.4686;RPPR=363.475;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=166;SRP=363.475;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:83:79,4:79:3150:4:162:0,-10.0185,-268.607 0/1:57:49,8:49:1928:8:322:-12.1885,0,-156.559 0/1:35:27,8:27:1082:8:318:-18.448,0,-87.1326 0/1:17:11,6:11:439:6:242:-17.0398,0,-34.7484 dDocent_Contig_2677 37 . T C 4218.99 . AB=0.443452;ABP=12.3425;AC=4;AF=0.5;AN=8;AO=149;CIGAR=1X;DP=336;DPB=336;DPRA=0;EPP=326.56;EPPR=409.076;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.979866;PAIREDR=0.909091;PAO=0;PQA=0;PQR=0;PRO=0;QA=5856;QR=7276;RO=187;RPL=0;RPP=326.56;RPPR=409.076;RPR=149;RUN=1;SAF=149;SAP=326.56;SAR=0;SRF=187;SRP=409.076;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:95:72,23:72:2829:23:924:-54.8673,0,-226.135 0/1:111:66,45:66:2529:45:1714:-121.062,0,-194.364 0/1:79:30,49:30:1173:49:1953:-152.191,0,-82.0713 0/1:51:19,32:19:745:32:1265:-98.7691,0,-52.021 dDocent_Contig_2678 31 . T A 2994.97 . AB=0.389286;ABP=32.8215;AC=4;AF=0.5;AN=8;AO=109;CIGAR=1X;DP=280;DPB=280;DPRA=0;EPP=239.701;EPPR=374.332;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4307;QR=6794;RO=171;RPL=0;RPP=239.701;RPPR=374.332;RPR=109;RUN=1;SAF=109;SAP=239.701;SAR=0;SRF=171;SRP=374.332;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:81:65,16:65:2602:16:649:-34.3605,0,-209.928 0/1:108:52,56:52:2075:56:2226:-168.002,0,-154.425 0/1:55:32,23:32:1263:23:869:-61.9503,0,-97.3879 0/1:36:22,14:22:854:14:563:-40.174,0,-66.3296 dDocent_Contig_2679 98 . N A 67.4638 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=11X;DP=2;DPB=2.09091;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=4.60517;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=71;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. 1|1:2:0,2:0:0:2:71:-6.74206,-0.60206,0 .:.:.:.:.:.:.:. dDocent_Contig_2680 108 . C T 45.0764 . AB=0.137255;ABP=61.2994;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=120;DPB=120;DPRA=2.21739;EPP=18.2106;EPPR=248.387;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=226;QR=3653;RO=113;RPL=0;RPP=18.2106;RPPR=248.387;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=248.387;SRR=113;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:51:44,7:44:1434:7:226:-5.3033,0,-113.992 0/0:58:58,0:58:1873:0:0:0,-17.4597,-168.838 0/0:6:6,0:6:192:0:0:0,-1.80618,-17.5956 0/0:5:5,0:5:154:0:0:0,-1.50515,-14.1639 dDocent_Contig_2681 7 . A G 116.387 . AB=0.151163;ABP=93.9091;AC=2;AF=0.25;AN=8;AO=34;CIGAR=1X;DP=382;DPB=382;DPRA=0;EPP=76.8404;EPPR=758.683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1091;QR=13312;RO=348;RPL=0;RPP=76.8404;RPPR=758.683;RPR=34;RUN=1;SAF=34;SAP=76.8404;SAR=0;SRF=348;SRP=758.683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:155:143,12:143:5478:12:386:0,-11.6156,-457.959 0/0:141:132,9:132:5045:9:271:0,-17.7651,-429.38 0/1:44:36,8:36:1364:8:244:-9.00842,0,-109.798 0/1:42:37,5:37:1425:5:190:-4.82404,0,-115.886 dDocent_Contig_2682 8 . A C 115.425 . AB=0;ABP=0;AC=0;AF=0;AN=8;AO=3;CIGAR=1X1M1X3M4D1M;DP=212;DPB=210.182;DPRA=0.367089;EPP=9.52472;EPPR=428.619;GTI=0;LEN=1;MEANALT=1.5;MQM=19;MQMR=60;NS=4;NUMALT=2;ODDS=6.93889e-18;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=97;QR=7305;RO=196;RPL=0;RPP=9.52472;RPPR=428.619;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=196;SRP=428.619;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:75:65,0,10:65:2416:0,10:0,384:-12.3384,-31.9053,-229.612,0,-198.089,-195.079 0|0:79:77,0,0:77:2883:0,0:0,0:0,-23.1793,-259.467,-23.1793,-259.467,-259.467 0|0:36:34,1,0:34:1274:1,0:39,0:0,-8.91999,-112.964,-10.235,-113.265,-114.665 0|0:22:20,2,0:20:732:2,0:58,0:0,-3.25666,-62.8346,-6.0206,-63.4367,-66.0063 dDocent_Contig_2683 15 . T G 44.4018 . AB=0.109091;ABP=76.0113;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=140;DPB=140;DPRA=4.38462;EPP=18.2106;EPPR=291.816;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=278;QR=5300;RO=133;RPL=0;RPP=18.2106;RPPR=291.816;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=133;SRP=291.816;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:55:49,6:49:1953:6:238:-5.23601,0,-159.403 0/0:59:58,1:58:2303:1:40:0,-13.7651,-203.437 0/0:19:19,0:19:762:0:0:0,-5.71957,-68.9027 0/0:7:7,0:7:282:0:0:0,-2.10721,-25.7526 dDocent_Contig_2684 15 . A G 940.394 . AB=0.177083;ABP=263.858;AC=3;AF=0.375;AN=8;AO=62;CIGAR=3X;DP=429;DPB=429;DPRA=0;EPP=137.642;EPPR=799.941;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.983651;PAO=0;PQA=0;PQR=0;PRO=0;QA=2471;QR=14642;RO=367;RPL=0;RPP=137.642;RPPR=799.941;RPR=62;RUN=1;SAF=62;SAP=137.642;SAR=0;SRF=367;SRP=799.941;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:141:130,11:130:5179:11:434:0,-3.03194,-426.582 0|1:174:141,33:141:5655:33:1315:-66.239,0,-456.387 0|1:83:71,12:71:2831:12:480:-18.5666,0,-229.921 0|1:31:25,6:25:977:6:242:-12.8256,0,-78.8977 dDocent_Contig_2685 85 . C T 4468.88 . AB=0.752;ABP=71.9589;AC=5;AF=0.625;AN=8;AO=155;CIGAR=1X;DP=191;DPB=191;DPRA=0;EPP=339.589;EPPR=72.7387;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.861111;PAO=0;PQA=0;PQR=0;PRO=0;QA=5584;QR=1269;RO=36;RPL=155;RPP=339.589;RPPR=81.1833;RPR=0;RUN=1;SAF=155;SAP=339.589;SAR=0;SRF=35;SRP=72.7387;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:45:9,36:9:331:36:1298:-103.573,0,-16.5939 1/1:66:5,61:5:170:61:2184:-181.183,-4.23465,0 0/1:45:14,31:14:485:31:1118:-87.382,0,-30.4287 0/1:35:8,27:8:283:27:984:-78.341,0,-15.2759 dDocent_Contig_2686 107 . N A 103.539 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=104;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:70:-6.6474,-0.60206,0 1/1:1:0,1:0:0:1:34:-3.39891,-0.30103,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_2687 41 . T G 8034.7 . AB=0.793548;ABP=119.023;AC=6;AF=0.75;AN=8;AO=248;CIGAR=1X;DP=289;DPB=289;DPRA=0;EPP=541.535;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.979839;PAIREDR=0.97561;PAO=0;PQA=0;PQR=0;PRO=0;QA=9819;QR=1613;RO=41;RPL=0;RPP=541.535;RPPR=92.0407;RPR=248;RUN=1;SAF=248;SAP=541.535;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:93:23,70:23:900:70:2824:-226.261,0,-53.3074 0/1:62:9,53:9:366:53:2102:-170.707,0,-14.6413 1/1:78:6,72:6:226:72:2781:-229.714,-2.7862,0 1/1:56:3,53:3:121:53:2112:-178.981,-5.57748,0 dDocent_Contig_2688 19 . G A 40.5418 . AB=0.121212;ABP=44.1367;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=120;DPB=120;DPRA=1.13793;EPP=11.6962;EPPR=254.901;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=160;QR=4636;RO=116;RPL=0;RPP=11.6962;RPPR=254.901;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=116;SRP=254.901;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:33:29,4:29:1146:4:160:-4.85002,0,-93.485 0/0:33:33,0:33:1321:0:0:0,-9.93399,-119.154 0/0:26:26,0:26:1043:0:0:0,-7.82678,-94.1626 0/0:28:28,0:28:1126:0:0:0,-8.42884,-101.62 dDocent_Contig_2689 7 . G A 77.2083 . AB=0.114583;ABP=126.875;AC=1;AF=0.125;AN=8;AO=12;CIGAR=1X;DP=211;DPB=211;DPRA=1.31868;EPP=29.068;EPPR=430.79;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.406091;PAO=0;PQA=0;PQR=0;PRO=0;QA=447;QR=6304;RO=197;RPL=0;RPP=29.068;RPPR=430.79;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=197;SRP=430.79;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:96:84,11:84:2660:11:410:-8.51671,0,-210.886 0/0:56:55,0:55:1756:0:0:0,-16.5566,-158.161 0/0:35:35,0:35:1227:0:0:0,-10.536,-110.709 0/0:24:23,1:23:661:1:37:0,-3.52689,-56.0517 dDocent_Contig_2690 27 . G A 1545.5 . AB=0.217391;ABP=242.344;AC=4;AF=0.5;AN=8;AO=75;CIGAR=2X;DP=345;DPB=345;DPRA=0;EPP=165.871;EPPR=589.308;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2912;QR=10263;RO=270;RPL=0;RPP=165.871;RPPR=589.308;RPR=75;RUN=1;SAF=75;SAP=165.871;SAR=0;SRF=270;SRP=589.308;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:148:101,47:101:3874:47:1827:-120.117,0,-304.181 0|1:118:106,12:106:4008:12:455:-5.77459,0,-325.269 0|1:45:35,10:35:1294:10:397:-22.5432,0,-103.185 0|1:34:28,6:28:1087:6:233:-11.1044,0,-87.8983 dDocent_Contig_2693 7 . G T 6088.94 . AB=0.0303951;ABP=633.206;AC=0;AF=0;AN=8;AO=10;CIGAR=1X3M1X;DP=371;DPB=371;DPRA=0;EPP=24.725;EPPR=313.531;GTI=0;LEN=1;MEANALT=4;MQM=52.9;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.7;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=328;QR=5033;RO=143;RPL=0;RPP=24.725;RPPR=313.531;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=143;SRP=313.531;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:126:58,2,64:58:2034:2,64:64,2383:-177.634,-189.938,-354.824,0,-160.406,-146.296 0|0:143:47,5,87:47:1680:5,87:173,3327:-258.899,-260.828,-396.276,0,-124.82,-110.851 0|0:60:23,3,33:23:782:3,33:91,1269:-97.3562,-97.0001,-159.502,0,-56.2091,-53.5577 0|0:42:15,0,27:15:537:0,27:0,1026:-79.995,-84.5105,-128.286,0,-44.1415,-36.0137 dDocent_Contig_2694 7 . G A 432.035 . AB=0.168831;ABP=149.712;AC=1;AF=0.125;AN=8;AO=29;CIGAR=1X;DP=417;DPB=417;DPRA=1.04412;EPP=65.983;EPPR=819.484;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1110;QR=12012;RO=376;RPL=0;RPP=65.983;RPPR=819.484;RPR=29;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=376;SRP=819.484;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:132:126,0:126:4103:0:0:0,-37.9298,-369.154 0/1:154:124,26:124:3925:26:993:-44.3004,0,-308.037 0/0:72:71,0:71:2299:0:0:0,-21.3731,-206.802 0/0:59:55,3:55:1685:3:117:0,-6.90917,-140.984 dDocent_Contig_2695 48 . G A 207.266 . AB=0.135135;ABP=131.362;AC=1;AF=0.125;AN=8;AO=18;CIGAR=1X;DP=427;DPB=427;DPRA=2.20833;EPP=42.0968;EPPR=891.143;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=728;QR=16165;RO=409;RPL=0;RPP=42.0968;RPPR=891.143;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=409;SRP=891.143;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:149:147,2:147:5803:2:80:0,-37.2617,-514.503 0/0:111:110,1:110:4341:1:38:0,-29.6171,-386.859 0/1:111:96,15:96:3773:15:610:-21.8235,0,-306.18 0/0:56:56,0:56:2248:0:0:0,-16.8577,-202.486 dDocent_Contig_2696 17 . A G 516.831 . AB=0.30137;ABP=28.0269;AC=2;AF=0.25;AN=8;AO=26;CIGAR=1X;DP=151;DPB=151;DPRA=2.18333;EPP=59.4686;EPPR=274.444;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=991;QR=4679;RO=125;RPL=0;RPP=59.4686;RPPR=274.444;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=125;SRP=274.444;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:59:41,18:41:1505:18:677:-43.4907,0,-117.942 0/0:58:54,4:54:2029:4:156:0,-3.0433,-168.402 0/0:20:20,0:20:767:0:0:0,-6.0206,-69.3529 0/1:14:10,4:10:378:4:158:-10.3862,0,-30.152 dDocent_Contig_2697 16 . A G 871.794 . AB=0.183267;ABP=221.723;AC=4;AF=0.5;AN=8;AO=46;CIGAR=1X;DP=251;DPB=251;DPRA=0;EPP=102.898;EPPR=448.162;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.956098;PAO=0;PQA=0;PQR=0;PRO=0;QA=1848;QR=7960;RO=205;RPL=0;RPP=102.898;RPPR=448.162;RPR=46;RUN=1;SAF=46;SAP=102.898;SAR=0;SRF=205;SRP=448.162;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:64:53,11:53:2029:11:445:-21.1404,0,-163.536 0/1:70:60,10:60:2355:10:390:-14.3799,0,-191.037 0/1:80:60,20:60:2372:20:810:-49.1339,0,-189.568 0/1:37:32,5:32:1204:5:203:-7.51495,0,-97.4879 dDocent_Contig_2698 53 . C T 99.7197 . AB=0.11215;ABP=142.817;AC=1;AF=0.125;AN=8;AO=12;CIGAR=1X;DP=293;DPB=293;DPRA=1.72581;EPP=29.068;EPPR=613.194;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=477;QR=11083;RO=281;RPL=12;RPP=29.068;RPPR=613.194;RPR=0;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=281;SRP=613.194;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:98:98,0:98:3909:0:0:0,-29.5009,-351.807 0/1:107:95,12:95:3720:12:477:-11.0689,0,-302.604 0/0:60:60,0:60:2334:0:0:0,-18.0618,-210.218 0/0:28:28,0:28:1120:0:0:0,-8.42884,-101.081 dDocent_Contig_2700 54 . G C 131.231 . AB=0.112583;ABP=199.866;AC=3;AF=0.375;AN=8;AO=17;CIGAR=1X;DP=264;DPB=264;DPRA=0.445428;EPP=39.9253;EPPR=539.364;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=678;QR=9880;RO=247;RPL=17;RPP=39.9253;RPPR=539.364;RPR=0;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=247;SRP=539.364;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:113:113,0:113:4536:0:0:0,-34.0164,-408.16 0/1:78:71,7:71:2848:7:282:-2.27175,0,-232.944 0/1:44:37,7:37:1458:7:273:-11.6891,0,-118.224 0/1:29:26,3:26:1038:3:123:-2.73492,0,-84.9852 dDocent_Contig_2702 11 . T C 819.098 . AB=0.208955;ABP=150.897;AC=3;AF=0.375;AN=8;AO=43;CIGAR=1X;DP=298;DPB=298;DPRA=0;EPP=96.3836;EPPR=556.736;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1652;QR=9609;RO=255;RPL=0;RPP=96.3836;RPPR=556.736;RPR=43;RUN=1;SAF=43;SAP=96.3836;SAR=0;SRF=255;SRP=556.736;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:97:96,1:96:3591:1:41:0,-25.1053,-319.188 0/1:42:37,5:37:1416:5:196:-5.37158,0,-115.061 0/1:95:71,24:71:2692:24:896:-52.338,0,-213.839 0/1:64:51,13:51:1910:13:519:-27.792,0,-152.86 dDocent_Contig_2703 200 . C T 1675.65 . AB=0.459259;ABP=4.95658;AC=4;AF=0.5;AN=8;AO=62;CIGAR=1X;DP=135;DPB=135;DPRA=0;EPP=137.642;EPPR=161.528;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2354;QR=2759;RO=73;RPL=62;RPP=137.642;RPPR=161.528;RPR=0;RUN=1;SAF=0;SAP=137.642;SAR=62;SRF=0;SRP=161.528;SRR=73;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:52:25,27:25:992:27:1032:-77.53,0,-73.9304 0/1:34:16,18:16:584:18:687:-51.9219,0,-42.6534 0/1:33:24,9:24:884:9:347:-21.6546,0,-69.9399 0/1:16:8,8:8:299:8:288:-21.448,0,-22.4464 dDocent_Contig_2704 41 . G A 595.953 . AB=0.152263;ABP=258.234;AC=2;AF=0.25;AN=8;AO=39;CIGAR=1X;DP=502;DPB=502;DPRA=0.812785;EPP=87.6977;EPPR=1008.4;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=0.99784;PAO=0;PQA=0;PQR=0;PRO=0;QA=1574;QR=18272;RO=463;RPL=0;RPP=87.6977;RPPR=1008.4;RPR=39;RUN=1;SAF=39;SAP=87.6977;SAR=0;SRF=463;SRP=1008.4;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:166:136,30:136:5359:30:1215:-59.6501,0,-432.195 0/0:146:146,0:146:5775:0:0:0,-43.9504,-519.578 0/0:113:111,2:111:4386:2:82:0,-26.2367,-386.919 0/1:77:70,7:70:2752:7:277:-2.11884,0,-224.628 dDocent_Contig_2705 107 . N A 65.5698 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=4.60517;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=69;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:69:-6.55266,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_2706 53 . C G 393.737 . AB=0.147959;ABP=213.998;AC=2;AF=0.25;AN=8;AO=29;CIGAR=1X;DP=360;DPB=360;DPRA=1.19512;EPP=65.983;EPPR=429.596;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1110;QR=12513;RO=331;RPL=29;RPP=65.983;RPPR=429.596;RPR=0;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=331;SRP=721.768;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:107:107,0:107:4046:0:0:0,-32.2102,-364.195 0/1:140:118,22:118:4476:22:838:-33.5807,0,-360.709 0/0:57:57,0:57:2136:0:0:0,-17.1587,-192.439 0/1:56:49,7:49:1855:7:272:-7.98679,0,-150.311 dDocent_Contig_2707 17 . G A 1931.62 . AB=0.155894;ABP=814.489;AC=2;AF=0.25;AN=8;AO=125;CIGAR=1X;DP=1194;DPB=1194;DPRA=1.94095;EPP=274.444;EPPR=2322.14;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4886;QR=42394;RO=1068;RPL=0;RPP=274.444;RPPR=2322.14;RPR=125;RUN=1;SAF=125;SAP=274.444;SAR=0;SRF=1068;SRP=2322.14;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:415:349,65:349:13904:65:2541:-104.094,0,-1125.62 0/1:374:316,58:316:12578:58:2263:-91.2618,0,-1018.54 0/0:230:228,2:228:9025:2:82:0,-61.4572,-803.973 0/0:175:175,0:175:6887:0:0:0,-52.6802,-619.554 dDocent_Contig_2708 1 . N G 112.824 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.29832;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=121;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:121:-11.2802,-0.90309,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_2710 21 . T C 337.301 . AB=0.216867;ABP=60.8029;AC=2;AF=0.25;AN=8;AO=18;CIGAR=1X;DP=117;DPB=117;DPRA=2.44118;EPP=42.0968;EPPR=217.986;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.944444;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=669;QR=3897;RO=99;RPL=0;RPP=42.0968;RPPR=217.986;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=99;SRP=217.986;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:50:37,13:37:1456:13:477:-28.2095,0,-116.251 0/1:33:28,5:28:1104:5:192:-7.71436,0,-89.721 0/0:23:23,0:23:911:0:0:0,-6.92369,-82.3021 0/0:11:11,0:11:426:0:0:0,-3.31133,-38.6922 dDocent_Contig_2711 13 . T G 15721.3 . AB=0.253831;ABP=793.075;AC=2;AF=0.25;AN=8;AO=381;CIGAR=1X2M1X;DP=1501;DPB=1501;DPRA=0;EPP=830.341;EPPR=1470.93;GTI=0;LEN=1;MEANALT=3.25;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=14398;QR=26476;RO=676;RPL=0;RPP=830.341;RPPR=1470.93;RPR=381;RUN=1;SAF=381;SAP=830.341;SAR=0;SRF=676;SRP=1470.93;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:417:189,84,144:189:7349:84,144:3172,5741:-415.872,-212.804,-791.386,0,-343.914,-560.533 0|0:396:166,56,173:166:6571:56,173:2153,6858:-514.498,-387.724,-911.657,0,-364.053,-488.721 0|1:390:204,118,67:204:8018:118,67:4418,2581:-300.379,0,-623.966,-149.902,-447.607,-789.226 0|1:298:117,123,55:117:4538:123,55:4655,2167:-346.374,0,-335.785,-203.325,-194.545,-559.584 dDocent_Contig_2713 1 . N G 245.704 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=7;CIGAR=1X;DP=7;DPB=7;DPRA=0;EPP=18.2106;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=8.07091;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=269;QR=0;RO=0;RPL=0;RPP=18.2106;RPPR=0;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:7:0,7:0:0:7:269:-24.5703,-2.10721,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_2714 7 . A G 23001.4 . AB=0.828269;ABP=711.561;AC=5;AF=0.625;AN=8;AO=876;CIGAR=1X;DP=1034;DPB=1034;DPRA=0;EPP=1905.22;EPPR=296.159;GTI=0;LEN=1;MEANALT=2.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=28745;QR=5089;RO=135;RPL=0;RPP=1905.22;RPPR=296.159;RPR=876;RUN=1;SAF=876;SAP=1905.22;SAR=0;SRF=135;SRP=296.159;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:422:48,368:48:1788:368:12059:-959.693,0,-35.7799 1/1:277:17,249:17:648:249:8381:-695.624,-21.643,0 0/1:198:51,144:51:1926:144:4562:-351.855,0,-114.732 0/1:137:19,115:19:727:115:3743:-296.562,0,-25.275 dDocent_Contig_2715 21 . G C 198.155 . AB=0.155844;ABP=82.2267;AC=1;AF=0.125;AN=8;AO=35;CIGAR=1X;DP=417;DPB=417;DPRA=0;EPP=79.0118;EPPR=806.66;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.7251;NS=4;NUMALT=1;ODDS=0;PAIRED=0.942857;PAIREDR=0.992147;PAO=0;PQA=0;PQR=0;PRO=0;QA=1407;QR=15273;RO=382;RPL=0;RPP=79.0118;RPPR=832.513;RPR=35;RUN=1;SAF=35;SAP=79.0118;SAR=0;SRF=379;SRP=806.66;SRR=3;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:191:178,13:178:7137:13:518:0,-10.53,-593.991 0/0:129:120,9:120:4777:9:363:0,-5.79879,-396.809 0/1:77:65,12:65:2590:12:486:-20.9123,0,-208.182 0/0:20:19,1:19:769:1:40:0,-2.02492,-65.534 dDocent_Contig_2717 209 . N G 264.51 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=7;CIGAR=1X;DP=7;DPB=7;DPRA=0;EPP=18.2106;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=282;QR=0;RO=0;RPL=7;RPP=18.2106;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:5:0,5:0:0:5:204:-18.744,-1.50515,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:78:-7.40347,-0.60206,0 dDocent_Contig_2718 21 . C A 6384.49 . AB=0.678808;ABP=86.878;AC=4;AF=0.5;AN=8;AO=205;CIGAR=1X;DP=302;DPB=302;DPRA=0;EPP=448.162;EPPR=213.643;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=8151;QR=3874;RO=97;RPL=0;RPP=448.162;RPPR=213.643;RPR=205;RUN=1;SAF=205;SAP=448.162;SAR=0;SRF=97;SRP=213.643;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:122:59,63:59:2352:63:2522:-190.392,0,-175.112 0/1:89:26,63:26:1045:63:2503:-198.617,0,-67.5494 0/1:68:8,60:8:319:60:2366:-192.632,0,-8.60629 0/1:23:4,19:4:158:19:760:-61.7985,0,-7.67621 dDocent_Contig_2719 30 . T G 133.071 . AB=0.179487;ABP=37.8095;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X;DP=122;DPB=122;DPRA=2.57143;EPP=22.5536;EPPR=248.387;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=365;QR=4494;RO=113;RPL=0;RPP=22.5536;RPPR=248.387;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=113;SRP=248.387;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:39:32,7:32:1265:7:283:-14.1028,0,-102.385 0/0:50:49,1:49:1964:1:41:0,-10.9569,-172.862 0/0:19:18,1:18:718:1:41:0,-1.625,-60.8526 0/0:14:14,0:14:547:0:0:0,-4.21442,-49.5654 dDocent_Contig_2720 198 . C T 37.0995 . AB=0.25;ABP=7.35324;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=69;DPB=69;DPRA=1.02941;EPP=11.6962;EPPR=144.156;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=150;QR=2402;RO=65;RPL=4;RPP=11.6962;RPPR=144.156;RPR=0;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=144.156;SRR=65;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:27:25,2:25:926:2:74:0,-1.10238,-76.6223 0/0:17:17,0:17:636:0:0:0,-5.11751,-57.5719 0/0:17:17,0:17:612:0:0:0,-5.11751,-55.3976 0/1:8:6,2:6:228:2:76:-4.80643,0,-18.476 dDocent_Contig_2722 22 . G C 6150.14 . AB=0.571429;ABP=13.8677;AC=5;AF=0.625;AN=8;AO=198;CIGAR=1X;DP=309;DPB=309;DPRA=0;EPP=432.962;EPPR=241.872;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7885;QR=4325;RO=110;RPL=0;RPP=432.962;RPPR=241.872;RPR=198;RUN=1;SAF=198;SAP=432.962;SAR=0;SRF=110;SRP=241.872;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:97:60,37:60:2354:37:1459:-102.349,0,-182.82 0/1:97:21,76:21:827:76:3054:-245.739,0,-45.5447 1/1:64:5,58:5:197:58:2308:-189.826,-0.993123,0 0/1:51:24,27:24:947:27:1064:-80.6917,0,-70.1803 dDocent_Contig_2723 7 . G A 10674.8 . AB=0.0848214;ABP=338.386;AC=0;AF=0;AN=8;AO=19;CIGAR=1X2M1X3M;DP=474;DPB=474;DPRA=0;EPP=44.2683;EPPR=100.727;GTI=0;LEN=1;MEANALT=6;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=5.55112e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=731;QR=1654;RO=45;RPL=0;RPP=44.2683;RPPR=100.727;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:141:11,0,48,78:11:408:0,48,78:0,1865,2959:-359.151,-362.463,-395.844,-209.218,-242.6,-228.15,-119.889,-153.269,0,-129.789 0|0:176:7,13,81,64:7:259:13,81,64:503,3120,2437:-432.732,-393.521,-410.794,-178.679,-158.545,-175.482,-234.989,-214.856,0,-236.91 0|0:109:22,0,55,28:22:808:0,55,28:0,2130,1065:-189.646,-196.269,-262.313,-21.295,-87.3386,-70.7819,-108.939,-174.982,0,-166.553 0|0:48:5,6,21,13:5:179:6,21,13:228,826,478:-90.9443,-73.7501,-86.5347,-24.4873,-20.3749,-32.7588,-53.3836,-49.2738,0,-64.0601 dDocent_Contig_2724 59 . C T 7668.59 . AB=0.82866;ABP=304.182;AC=4;AF=0.5;AN=8;AO=266;CIGAR=1X;DP=321;DPB=321;DPRA=0;EPP=580.622;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=9639;QR=1966;RO=55;RPL=266;RPP=580.622;RPPR=122.441;RPR=0;RUN=1;SAF=266;SAP=580.622;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:120:21,99:21:768:99:3586:-286.8,0,-33.3232 0/1:111:18,93:18:611:93:3379:-270.888,0,-21.888 0/1:58:8,50:8:291:50:1794:-144.27,0,-9.07859 0/1:32:8,24:8:296:24:880:-69.8894,0,-17.3612 dDocent_Contig_2725 44 . A G 6486.67 . AB=0.859259;ABP=154.354;AC=5;AF=0.625;AN=8;AO=198;CIGAR=1X;DP=221;DPB=221;DPRA=0;EPP=432.962;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7847;QR=899;RO=23;RPL=0;RPP=432.962;RPPR=52.9542;RPR=198;RUN=1;SAF=198;SAP=432.962;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:86:4,82:4:153:82:3252:-278.608,-11.7479,0 0/1:56:7,49:7:273:49:1942:-158.127,0,-8.07712 0/1:50:7,43:7:276:43:1704:-138.54,0,-10.1575 0/1:29:5,24:5:197:24:949:-76.9838,0,-9.37595 dDocent_Contig_2726 19 . A T 48.489 . AB=0.104478;ABP=94.0501;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=234;DPB=234;DPRA=1.20359;EPP=18.2106;EPPR=495.935;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.977974;PAO=0;PQA=0;PQR=0;PRO=0;QA=286;QR=9160;RO=227;RPL=0;RPP=18.2106;RPPR=495.935;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=227;SRP=495.935;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:59:59,0:59:2377:0:0:0,-17.7608,-214.076 0/0:69:69,0:69:2802:0:0:0,-20.7711,-252.273 0/1:67:60,7:60:2407:7:286:-5.94581,0,-196.607 0/0:39:39,0:39:1574:0:0:0,-11.7402,-141.894 dDocent_Contig_2728 18 . C T 82.8043 . AB=0.127273;ABP=69.3784;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=146;DPB=146;DPRA=1.47458;EPP=20.3821;EPPR=302.673;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=325;QR=5434;RO=138;RPL=0;RPP=20.3821;RPPR=302.673;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=138;SRP=302.673;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:42:42,0:42:1651:0:0:0,-12.6433,-148.817 0/1:55:48,7:48:1883:7:284:-9.37734,0,-153.112 0/0:32:31,1:31:1220:1:41:0,-5.53839,-105.976 0/0:17:17,0:17:680:0:0:0,-5.11751,-61.5319 dDocent_Contig_2729 21 . G A 1121.4 . AB=0.0571429;ABP=62.6327;AC=0;AF=0;AN=8;AO=2;CIGAR=1X2M1X1M1X3M1X12M;DP=122;DPB=129.182;DPRA=0;EPP=7.35324;EPPR=89.8692;GTI=0;LEN=1;MEANALT=8;MQM=37;MQMR=60;NS=4;NUMALT=6;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=71;QR=1563;RO=40;RPL=0;RPP=7.35324;RPPR=89.8692;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:32:10,0,14,0,0,0,7:10:394:0,14,0,0,0,7:0,540,0,0,0,271:-41.3567,-44.367,-76.7891,0,-32.4398,-28.2254,-44.367,-76.7891,-32.4398,-76.7891,-44.367,-76.7891,-32.4398,-76.7891,-76.7891,-44.367,-76.7891,-32.4398,-76.7891,-76.7891,-76.7891,-22.1007,-54.5273,-10.1721,-54.5273,-54.5273,-54.5273,-52.4201 0|0:35:18,0,3,6,2,1,2:18:706:0,3,6,2,1,2:0,117,227,71,40,80:-13.1874,-18.6059,-76.6739,-8.98618,-67.056,-66.1529,0,-58.0687,-48.4508,-56.2625,-13.2541,-71.319,-61.7013,-52.7146,-70.7169,-15.3096,-73.3785,-63.7604,-54.7732,-68.0236,-73.0774,-12.0131,-70.083,-60.4649,-51.4776,-64.7281,-66.7874,-69.4809 0|0:43:5,4,5,12,0,12,4:5:190:4,5,12,0,12,4:159,196,469,0,418,156:-55.1714,-43.5831,-57.9607,-40.5559,-43.0439,-54.6325,-18.3831,-20.8707,-17.8434,-30.3531,-56.6766,-59.1648,-56.1376,-33.9654,-72.258,-22.7087,-25.1957,-22.169,0,-38.2881,-34.6757,-43.8521,-46.3402,-43.313,-21.14,-59.4337,-25.4649,-58.2296 0|0:12:7,3,1,0,0,1,0:7:273:3,1,0,0,1,0:115,40,0,0,9,0:-7.41434,0,-21.6503,-6.20851,-19.253,-28.399,-9.52155,-22.5534,-28.7,-31.9984,-9.52155,-22.5534,-28.7,-31.9984,-31.9984,-9.07202,-22.0778,-28.2181,-31.5143,-31.5143,-31.2133,-9.52155,-22.5534,-28.7,-31.9984,-31.9984,-31.5143,-31.9984 dDocent_Contig_2730 38 . A T 5028.44 . AB=0.738351;ABP=140.685;AC=4;AF=0.5;AN=8;AO=206;CIGAR=1X;DP=279;DPB=279;DPRA=0;EPP=450.334;EPPR=161.528;GTI=0;LEN=1;MEANALT=1;MQM=33.6505;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=0.990291;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=8100;QR=2905;RO=73;RPL=0;RPP=450.334;RPPR=161.528;RPR=206;RUN=1;SAF=206;SAP=450.334;SAR=0;SRF=73;SRP=161.528;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:94:25,69:25:1005:69:2701:-167.953,0,-62.4492 0/1:83:20,63:20:803:63:2517:-161.252,0,-47.6029 0/1:72:23,49:23:907:49:1935:-118.456,0,-60.2599 0/1:30:5,25:5:190:25:947:-60.1719,0,-8.43465 dDocent_Contig_2731 69 . A G 4171.27 . AB=0.854545;ABP=123.112;AC=6;AF=0.75;AN=8;AO=128;CIGAR=1X;DP=144;DPB=144;DPRA=0;EPP=280.959;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.976562;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5012;QR=584;RO=16;RPL=128;RPP=280.959;RPPR=37.7539;RPR=0;RUN=1;SAF=128;SAP=280.959;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:44:10,34:10:354:34:1333:-106.994,0,-18.946 0/1:66:6,60:6:230:60:2356:-192.342,0,-1.19867 1/1:13:0,13:0:0:13:490:-44.4358,-3.91339,0 1/1:21:0,21:0:0:21:833:-75.2864,-6.32163,0 dDocent_Contig_2732 28 . T A 9509.56 . 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AB=0.0560345;ABP=400.203;AC=6;AF=0.75;AN=8;AO=13;CIGAR=1X6M;DP=330;DPB=323.286;DPRA=0;EPP=31.2394;EPPR=107.241;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=4;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=521;QR=1881;RO=48;RPL=0;RPP=31.2394;RPPR=107.241;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:98:19,14,0,65,0:19:744:14,0,65,0:552,0,2509,0:-200.3,-160.603,-217.566,-206.02,-221.781,-267.197,0,-15.7586,-61.1751,-41.6081,-206.02,-221.781,-267.197,-61.1751,-267.197 1|1:87:18,25,0,36,8:18:711:25,0,36,8:959,0,1386,323:-128.555,-55.2707,-106.255,-133.973,-113.781,-192.484,-20.187,0,-78.6976,-67.8606,-107.344,-87.1513,-165.854,-52.0676,-163.446 1|1:90:0,8,0,79,3:0:0:8,0,79,3:319,0,3082,120:-279.577,-253.305,-250.896,-279.577,-253.305,-279.577,-26.2703,0,-26.2703,-2.48897,-269.691,-243.419,-269.691,-16.385,-268.788 0|1:55:11,0,4,38,2:11:426:0,4,38,2:0,155,1503,78:-120.387,-123.698,-158.69,-110.966,-145.957,-144.753,0,-34.9924,-22.2595,-23.5533,-117.287,-152.279,-139.546,-28.581,-151.677 dDocent_Contig_2740 26 . 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AB=0.607843;ABP=13.3141;AC=4;AF=0.5;AN=8;AO=62;CIGAR=1X;DP=102;DPB=102;DPRA=0;EPP=137.642;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.596774;PAIREDR=0.775;PAO=0;PQA=0;PQR=0;PRO=0;QA=2066;QR=1273;RO=40;RPL=62;RPP=137.642;RPPR=89.8692;RPR=0;RUN=1;SAF=62;SAP=137.642;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:14,17:14:433:17:575:-42.7388,0,-29.9375 0/1:23:5,18:5:163:18:584:-45.9452,0,-8.06819 0/1:27:14,13:14:464:13:441:-31.8885,0,-33.9514 0/1:21:7,14:7:213:14:466:-35.9384,0,-13.1493 dDocent_Contig_2742 37 . G C 4448.21 . AB=0.812865;ABP=148.397;AC=4;AF=0.5;AN=8;AO=139;CIGAR=1X;DP=171;DPB=171;DPRA=0;EPP=304.845;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5549;QR=1217;RO=31;RPL=0;RPP=304.845;RPPR=70.3259;RPR=139;RUN=1;SAF=139;SAP=304.845;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:79:18,60:18:702:60:2403:-192.842,0,-39.919 0/1:66:10,56:10:396:56:2223:-180.376,0,-16.1292 0/1:11:1,10:1:41:10:400:-33.0472,0,-0.783237 0/1:15:2,13:2:78:13:523:-42.9019,0,-2.88733 dDocent_Contig_2743 17 . A T 72.8967 . AB=0.119048;ABP=108.895;AC=1;AF=0.125;AN=8;AO=15;CIGAR=1X;DP=216;DPB=216;DPRA=3.09524;EPP=35.5824;EPPR=437.305;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=59.12;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=0.98;PAO=0;PQA=0;PQR=0;PRO=0;QA=548;QR=7893;RO=200;RPL=0;RPP=35.5824;RPPR=437.305;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=200;SRP=437.305;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:84:73,10:73:2873:10:365:-8.08555,0,-225.036 0/0:74:70,4:70:2761:4:147:0,-8.68772,-235.031 0/0:37:36,1:36:1418:1:36:0,-7.53983,-124.277 0/0:21:21,0:21:841:0:0:0,-6.32163,-76.0058 dDocent_Contig_2744 14 . T C 8798.49 . AB=0.349078;ABP=174.737;AC=4;AF=0.5;AN=8;AO=303;CIGAR=4M1X;DP=868;DPB=868;DPRA=0;EPP=660.966;EPPR=747.825;GTI=0;LEN=1;MEANALT=3.5;MQM=59.5446;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=12018;QR=13068;RO=343;RPL=0;RPP=660.966;RPPR=747.825;RPR=303;RUN=1;SAF=303;SAP=660.966;SAR=0;SRF=343;SRP=747.825;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:188:63,11,38,74:63:2378:11,38,74:378,1449,2885:-217.84,-206.113,-397.674,-117.96,-282.141,-301.394,0,-164.187,-76.0308,-172.603 0|1:190:82,0,54,53:82:3131:0,54,53:0,1956,2127:-150.567,-175.252,-432.115,-15.6286,-272.48,-256.225,0,-256.875,-97.2401,-240.92 0|1:312:136,8,67,101:136:5208:8,67,101:292,2359,4031:-290.24,-307.325,-732.294,-139.226,-542.74,-546.426,0,-403.54,-235.434,-396.991 0|1:178:62,5,36,75:62:2351:5,36,75:178,1340,2975:-226.191,-230.35,-421.59,-135.197,-313.434,-317.103,0,-178.249,-83.0914,-170.177 dDocent_Contig_2745 69 . G A 1371.08 . AB=0.328283;ABP=53.7219;AC=3;AF=0.375;AN=8;AO=74;CIGAR=1X;DP=317;DPB=317;DPRA=0;EPP=163.699;EPPR=530.678;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2518;QR=8319;RO=243;RPL=74;RPP=163.699;RPPR=530.678;RPR=0;RUN=1;SAF=74;SAP=163.699;SAR=0;SRF=243;SRP=530.678;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:119:110,9:110:3767:9:303:0,-8.2255,-311.655 0/1:99:61,38:61:2089:38:1311:-88.4904,0,-158.484 0/1:58:36,22:36:1231:22:731:-48.6404,0,-93.6324 0/1:41:36,5:36:1232:5:173:-3.56798,0,-98.8408 dDocent_Contig_2746 17 . T A 109.599 . AB=0.227273;ABP=17.2236;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=82;DPB=82;DPRA=1.1;EPP=13.8677;EPPR=170.214;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=200;QR=2955;RO=77;RPL=0;RPP=13.8677;RPPR=170.214;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=77;SRP=170.214;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:17,5:17:645:5:200:-11.7558,0,-51.7564 0/0:30:30,0:30:1127:0:0:0,-9.0309,-101.716 0/0:16:16,0:16:624:0:0:0,-4.81648,-56.4986 0/0:14:14,0:14:559:0:0:0,-4.21442,-50.6542 dDocent_Contig_2747 12 . T C 39.9877 . AB=0.0956522;ABP=166.324;AC=1;AF=0.125;AN=8;AO=11;CIGAR=1X;DP=408;DPB=408;DPRA=1.17747;EPP=26.8965;EPPR=865.085;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=434;QR=15508;RO=397;RPL=0;RPP=26.8965;RPPR=865.085;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=397;SRP=865.085;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:115:104,11:104:4049:11:434:-4.79461,0,-329.811 0/0:130:130,0:130:5117:0:0:0,-39.1339,-460.426 0/0:129:129,0:129:5043:0:0:0,-38.8329,-453.779 0/0:34:34,0:34:1299:0:0:0,-10.235,-117.181 dDocent_Contig_2749 31 . C T 3082.32 . AB=0.3325;ABP=100.488;AC=4;AF=0.5;AN=8;AO=133;CIGAR=1X;DP=400;DPB=400;DPRA=0;EPP=291.816;EPPR=582.793;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4805;QR=10497;RO=267;RPL=0;RPP=291.816;RPPR=582.793;RPR=133;RUN=1;SAF=133;SAP=291.816;SAR=0;SRF=267;SRP=582.793;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:142:89,53:89:3508:53:1928:-131.029,0,-273.017 0/1:120:71,49:71:2840:49:1755:-122.088,0,-219.583 0/1:94:79,15:79:3038:15:548:-21.3577,0,-245.213 0/1:44:28,16:28:1111:16:574:-38.7473,0,-87.0259 dDocent_Contig_2750 98 . N C 235.36 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=8;CIGAR=1X;DP=8;DPB=8;DPRA=0;EPP=20.3821;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=8.76405;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=258;QR=0;RO=0;RPL=8;RPP=20.3821;RPPR=0;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:8:0,8:0:0:8:258:-23.536,-2.40824,0 dDocent_Contig_2751 98 . N A 72.1147 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=71;QR=0;RO=0;RPL=3;RPP=9.52472;RPPR=0;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:39:-3.70448,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:1:0,1:0:0:1:32:-3.19931,-0.30103,0 dDocent_Contig_2752 7 . G A 6047.84 . AB=0.132353;ABP=82.8438;AC=0;AF=0;AN=8;AO=9;CIGAR=2X1M1X;DP=251;DPB=251;DPRA=1.56322;EPP=22.5536;EPPR=63.8115;GTI=0;LEN=1;MEANALT=5;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=346;QR=963;RO=28;RPL=0;RPP=22.5536;RPPR=63.8115;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:96:13,80,0:13:448:80,0:2859,0:-229.221,0,-12.3548,-233.134,-36.4372,-269.52 0|0:68:12,44,9:12:417:44,9:1568,346:-124.18,0,-20.6551,-99.3805,-5.47136,-130.57 0|0:58:3,54,0:3:98:54,0:1894,0:-161.573,-8.31415,0,-162.476,-16.2556,-170.388 0|0:29:0,29,0:0:0:29,0:1019,0:-92.0044,-8.72987,0,-92.0044,-8.72987,-92.0044 dDocent_Contig_2753 18 . G T 6533.05 . AB=0.417745;ABP=34.8037;AC=4;AF=0.5;AN=8;AO=226;CIGAR=1X;DP=541;DPB=541;DPRA=0;EPP=493.763;EPPR=687.024;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.873;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=9117;QR=12477;RO=315;RPL=0;RPP=493.763;RPPR=687.024;RPR=226;RUN=1;SAF=226;SAP=493.763;SAR=0;SRF=315;SRP=687.024;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:173:96,77:96:3793:77:3100:-226.992,0,-289.208 0/1:172:103,69:103:4100:69:2797:-200.048,0,-317.198 0/1:132:83,49:83:3280:49:1969:-137.666,0,-255.532 0/1:64:33,31:33:1304:31:1251:-93.5898,0,-98.3562 dDocent_Contig_2754 9 . A T 2803.49 . AB=0.0742857;ABP=278.489;AC=0;AF=0;AN=8;AO=13;CIGAR=1X1M1X2M;DP=175;DPB=175;DPRA=0;EPP=31.2394;EPPR=59.4686;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=4;NUMALT=4;ODDS=0;PAIRED=0.538462;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=475;QR=996;RO=26;RPL=0;RPP=31.2394;RPPR=59.4686;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:85:15,1,10,11,47:15:574:1,10,11,47:38,358,400,1528:-118.769,-120.167,-166.977,-94.0903,-138.086,-138.193,-90.6207,-134.617,-108.541,-134.423,0,-43.9951,-17.9257,-14.4558,-32.9634 0|0:20:0,3,0,10,6:0:0:3,0,10,6:116,0,380,199:-47.2967,-37.7625,-36.8595,-47.2967,-37.7625,-47.2967,-16.1069,-6.55266,-16.1069,-13.0966,-31.2076,-21.6726,-31.2076,0,-29.4014 0|0:48:3,6,0,15,23:3:114:6,0,15,23:210,0,572,783:-100.185,-84.0057,-91.5508,-101.088,-93.357,-110.439,-54.1501,-46.4192,-63.5032,-58.9877,-37.5916,-29.8659,-46.9425,0,-40.0188 0|0:22:8,3,0,3,8:8:308:3,0,3,8:111,0,112,266:-19.089,-12.4106,-36.8143,-21.4972,-37.7174,-46.7996,-12.3205,-28.545,-37.6277,-36.7246,0,-16.2186,-25.297,-16.1285,-22.8888 dDocent_Contig_2756 14 . G A 1610.92 . AB=0.240132;ABP=181.328;AC=4;AF=0.5;AN=8;AO=73;CIGAR=1X;DP=304;DPB=304;DPRA=0;EPP=161.528;EPPR=502.449;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2849;QR=8945;RO=230;RPL=0;RPP=161.528;RPPR=502.449;RPR=73;RUN=1;SAF=73;SAP=161.528;SAR=0;SRF=230;SRP=502.449;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:111:81,30:81:3147:30:1188:-73.7879,0,-249.926 0/1:99:68,31:68:2665:31:1196:-78.1184,0,-210.192 0/1:67:58,8:58:2258:8:319:-8.80912,0,-183.14 0/1:27:23,4:23:875:4:146:-5.36666,0,-70.9249 dDocent_Contig_2757 7 . C G 7757.46 . AB=0.779817;ABP=77.1392;AC=6;AF=0.75;AN=8;AO=294;CIGAR=1X;DP=339;DPB=339;DPRA=0;EPP=641.423;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1.75;MQM=59.7381;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.986395;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=9552;QR=1350;RO=36;RPL=0;RPP=641.423;RPPR=81.1833;RPR=294;RUN=1;SAF=294;SAP=641.423;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:110:6,98:6:232:98:3182:-265.13,-10.3962,0 1/1:120:9,111:9:319:111:3624:-297.266,-7.08232,0 0/1:72:10,59:10:387:59:1912:-151.334,0,-14.1812 0/1:37:11,26:11:412:26:834:-64.2093,0,-26.2858 dDocent_Contig_2759 46 . G T 233.633 . AB=0.144144;ABP=125.102;AC=1;AF=0.125;AN=8;AO=16;CIGAR=1X;DP=315;DPB=315;DPRA=1.63235;EPP=37.7539;EPPR=438.939;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=636;QR=11826;RO=299;RPL=0;RPP=37.7539;RPPR=438.939;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=299;SRP=652.281;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:111:95,16:95:3775:16:636:-24.1592,0,-306.353 0/0:105:105,0:105:4169:0:0:0,-31.6081,-375.182 0/0:64:64,0:64:2520:0:0:0,-19.2659,-226.956 0/0:35:35,0:35:1362:0:0:0,-10.536,-122.838 dDocent_Contig_2761 10 . A T 11309.4 . AB=0.107623;ABP=599.435;AC=1;AF=0.125;AN=8;AO=48;CIGAR=1X3M1X;DP=446;DPB=446;DPRA=0;EPP=107.241;EPPR=137.642;GTI=0;LEN=1;MEANALT=2.25;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=5.55112e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1818;QR=2389;RO=62;RPL=0;RPP=107.241;RPPR=137.642;RPR=48;RUN=1;SAF=48;SAP=107.241;SAR=0;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:149:17,36,96:17:657:36,96:1357,3805:-365.278,-259.217,-302.336,-57.2172,0,-82.2794 0|0:142:24,5,113:24:927:5,113:195,4494:-362.765,-353.962,-428.585,0,-60.0982,-42.1097 0|0:96:10,4,80:10:378:4,80:149,3219:-262.293,-253.109,-282.885,0,-18.8009,-6.91509 0|0:59:11,3,45:11:427:3,45:117,1807:-145.594,-139.288,-173.464,0,-25.4624,-21.5339 dDocent_Contig_2763 18 . G A 271.253 . AB=0.161616;ABP=101.472;AC=1;AF=0.125;AN=8;AO=19;CIGAR=1X;DP=322;DPB=322;DPRA=0.808989;EPP=44.2683;EPPR=660.966;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=761;QR=12018;RO=303;RPL=0;RPP=44.2683;RPPR=660.966;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=303;SRP=660.966;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:107:107,0:107:4215:0:0:0,-32.2102,-379.322 0/0:71:71,0:71:2835:0:0:0,-21.3731,-255.25 0/1:99:83,16:83:3297:16:641:-28.2222,0,-266.996 0/0:45:42,3:42:1671:3:120:0,-2.35904,-139.425 dDocent_Contig_2764 22 . A T 2376.63 . AB=0.592308;ABP=12.6316;AC=4;AF=0.5;AN=8;AO=77;CIGAR=1X2M1D5M;DP=130;DPB=119.111;DPRA=0;EPP=170.214;EPPR=68.1545;GTI=0;LEN=1;MEANALT=2.25;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=0.922078;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3055;QR=1187;RO=30;RPL=0;RPP=170.214;RPPR=68.1545;RPR=77;RUN=1;SAF=77;SAP=170.214;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:34:9,16,7,2:9:362:16,7,2:635,276,82:-49.5621,0,-25.0195,-29.5652,-7.13222,-57.293,-45.5022,-23.0665,-52.6312,-74.7355 0|1:54:8,38,8,0:8:314:38,8,0:1508,314,0:-121.73,0,-14.3851,-98.3168,-0.00182089,-121.732,-124.138,-25.8242,-124.14,-149.962 0|1:26:9,15,2,0:9:350:15,2,0:597,69,0:-46.4944,0,-24.2808,-43.6041,-23.1985,-71.7593,-49.2037,-28.7963,-72.3613,-77.9633 0|1:16:4,8,4,0:4:161:8,4,0:315,160,0:-24.7041,0,-10.8621,-12.7269,-0.0923586,-24.7948,-25.9082,-13.2704,-25.9989,-39.179 dDocent_Contig_2765 134 . C T 89.9723 . AB=0.363636;ABP=4.78696;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=116;DPB=116;DPRA=0.314286;EPP=11.6962;EPPR=246.215;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=145;QR=3954;RO=112;RPL=0;RPP=11.6962;RPPR=246.215;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=246.215;SRR=112;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:33:33,0:33:1155:0:0:0,-9.93399,-104.255 0/0:29:29,0:29:1025:0:0:0,-8.72987,-92.5605 0/0:43:43,0:43:1518:0:0:0,-12.9443,-136.907 0/1:11:7,4:7:256:4:145:-10.0941,0,-20.0816 dDocent_Contig_2766 31 . G A 149.43 . AB=0.151515;ABP=72.629;AC=1;AF=0.125;AN=8;AO=10;CIGAR=1X;DP=150;DPB=150;DPRA=2.35714;EPP=24.725;EPPR=307.016;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.978571;PAO=0;PQA=0;PQR=0;PRO=0;QA=395;QR=5531;RO=140;RPL=0;RPP=24.725;RPPR=307.016;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=140;SRP=307.016;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:24:24,0:24:977:0:0:0,-7.22472,-88.2262 0/0:35:35,0:35:1322:0:0:0,-10.536,-119.243 0/1:66:56,10:56:2231:10:395:-16.0399,0,-181.096 0/0:25:25,0:25:1001:0:0:0,-7.52575,-90.3873 dDocent_Contig_2767 15 . A G 795.055 . AB=0.263158;ABP=67.8116;AC=3;AF=0.375;AN=8;AO=35;CIGAR=1X;DP=173;DPB=173;DPRA=1.10833;EPP=79.0118;EPPR=300.502;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.942857;PAIREDR=0.927007;PAO=0;PQA=0;PQR=0;PRO=0;QA=1358;QR=5397;RO=137;RPL=0;RPP=79.0118;RPPR=300.502;RPR=35;RUN=1;SAF=35;SAP=79.0118;SAR=0;SRF=137;SRP=300.502;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:40:40,0:40:1575:0:0:0,-12.0412,-141.996 0/1:66:41,25:41:1610:25:986:-69.1739,0,-125.27 0/1:24:19,5:19:756:5:180:-9.31774,0,-61.137 0/1:43:37,5:37:1456:5:192:-4.60549,0,-118.252 dDocent_Contig_2768 21 . T C 13861.8 . AB=0.900585;ABP=241.352;AC=6;AF=0.75;AN=8;AO=411;CIGAR=1X;DP=438;DPB=438;DPRA=0;EPP=895.485;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=16417;QR=1091;RO=27;RPL=0;RPP=895.485;RPPR=61.6401;RPR=411;RUN=1;SAF=411;SAP=895.485;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:149:3,146:3:122:146:5836:-513.651,-33.481,0 1/1:118:7,111:7:287:111:4435:-372.883,-9.31631,0 0/1:82:9,73:9:363:73:2927:-238.836,0,-8.34872 0/1:89:8,81:8:319:81:3219:-262.985,0,-2.28428 dDocent_Contig_2769 109 . A T 213.137 . AB=0.134529;ABP=261.727;AC=4;AF=0.5;AN=8;AO=30;CIGAR=1X;DP=223;DPB=223;DPRA=0;EPP=68.1545;EPPR=417.762;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=0.9;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1015;QR=6474;RO=191;RPL=0;RPP=68.1545;RPPR=417.762;RPR=30;RUN=1;SAF=0;SAP=68.1545;SAR=30;SRF=0;SRP=417.762;SRR=191;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:92:79,12:79:2724:12:413:-9.75773,0,-217.665 0/1:56:48,7:48:1629:7:242:-5.45662,0,-130.259 0/1:35:28,7:28:939:7:221:-9.66382,0,-74.2773 0/1:40:36,4:36:1182:4:139:-0.811489,0,-94.627 dDocent_Contig_2770 15 . T C 11701 . AB=0.829885;ABP=414.187;AC=4;AF=0.5;AN=8;AO=361;CIGAR=1X;DP=435;DPB=435;DPRA=0;EPP=786.912;EPPR=163.699;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.869806;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=14511;QR=2930;RO=74;RPL=0;RPP=786.912;RPPR=163.699;RPR=361;RUN=1;SAF=361;SAP=786.912;SAR=0;SRF=74;SRP=163.699;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:131:24,107:24:957:107:4302:-347.69,0,-46.993 0/1:132:23,109:23:913:109:4379:-354.302,0,-42.7361 0/1:121:20,101:20:775:101:4078:-330.556,0,-33.6362 0/1:51:7,44:7:285:44:1752:-142.542,0,-10.6719 dDocent_Contig_2771 9 . T C 98.9736 . AB=0.0965517;ABP=208.012;AC=2;AF=0.25;AN=8;AO=17;CIGAR=2M2X;DP=261;DPB=261;DPRA=4.24561;EPP=39.9253;EPPR=472.048;GTI=0;LEN=1;MEANALT=3;MQM=59.0588;MQMR=60;NS=4;NUMALT=4;ODDS=0;PAIRED=0.882353;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=672;QR=8241;RO=216;RPL=0;RPP=39.9253;RPPR=472.048;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=216;SRP=472.048;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:109:81,1,10,10,7:81:3078:1,10,10,7:39,395,363,282:-8.12671,-29.3041,-281.419,0,-249.214,-249.409,-2.88583,-252.085,-222.785,-252.281,-9.26135,-258.476,-229.175,-232.047,-259.574 0|0:97:87,7,3,0,0:87:3332:7,3,0,0:267,119,0,0:0,-4.87536,-276.203,-16.3863,-268.514,-288.941,-26.1896,-278.31,-289.844,-299.641,-26.1896,-278.31,-289.844,-299.641,-299.641 0|1:36:30,1,4,0,0:30:1146:1,4,0,0:39,158,0,0:-3.96397,-9.7872,-103.517,0,-90.8474,-92.8495,-12.9949,-103.818,-94.0536,-107.024,-12.9949,-103.818,-94.0536,-107.024,-107.024 0|0:19:18,1,0,0,0:18:685:1,0,0,0:39,0,0,0:0,-1.82301,-58.0857,-5.41854,-58.3867,-61.5931,-5.41854,-58.3867,-61.5931,-61.5931,-5.41854,-58.3867,-61.5931,-61.5931,-61.5931 dDocent_Contig_2772 40 . T C 1662.98 . AB=0.265385;ABP=127.319;AC=1;AF=0.125;AN=8;AO=126;CIGAR=1X;DP=1134;DPB=1134;DPRA=0;EPP=276.616;EPPR=2191.85;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.999008;PAO=0;PQA=0;PQR=0;PRO=0;QA=4959;QR=39493;RO=1008;RPL=0;RPP=276.616;RPPR=2191.85;RPR=126;RUN=1;SAF=126;SAP=276.616;SAR=0;SRF=1008;SRP=2191.85;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:372:346,26:346:13558:26:984:0,-23.1277,-1130.51 0/0:263:249,14:249:9775:14:562:0,-28.2471,-828.313 0/1:260:191,69:191:7481:69:2728:-167.395,0,-594.735 0/0:239:222,17:222:8679:17:685:0,-9.96501,-718.712 dDocent_Contig_2773 209 . N G 157.735 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=163;QR=0;RO=0;RPL=4;RPP=11.6962;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1:0,1:0:0:1:41:-4.09457,-0.30103,0 1/1:3:0,3:0:0:3:122:-11.3725,-0.90309,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_2774 50 . A C 225.373 . AB=0.22;ABP=37.059;AC=1;AF=0.125;AN=8;AO=13;CIGAR=1X;DP=175;DPB=175;DPRA=1.30263;EPP=31.2394;EPPR=354.789;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=508;QR=6407;RO=162;RPL=13;RPP=31.2394;RPPR=354.789;RPR=0;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=162;SRP=354.789;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:66:66,0:66:2609:0:0:0,-19.868,-234.944 0/1:50:39,11:39:1530:11:426:-23.6342,0,-122.891 0/0:49:47,2:47:1867:2:82:0,-6.97079,-160.454 0/0:10:10,0:10:401:0:0:0,-3.0103,-36.4493 dDocent_Contig_2775 187 . T C 77.2988 . AB=0.107843;ABP=139.26;AC=1;AF=0.125;AN=8;AO=11;CIGAR=1X;DP=249;DPB=249;DPRA=2.08163;EPP=26.8965;EPPR=519.821;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=432;QR=9511;RO=238;RPL=11;RPP=26.8965;RPPR=519.821;RPR=0;RUN=1;SAF=0;SAP=26.8965;SAR=11;SRF=0;SRP=519.821;SRR=238;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:102:91,11:91:3676:11:432:-8.52576,0,-300.135 0/0:76:76,0:76:3001:0:0:0,-22.8783,-270.182 0/0:44:44,0:44:1743:0:0:0,-13.2453,-157.082 0/0:27:27,0:27:1091:0:0:0,-8.12781,-98.4754 dDocent_Contig_2778 17 . T G 1502.33 . AB=0.341317;ABP=39.5352;AC=3;AF=0.375;AN=8;AO=62;CIGAR=1X;DP=238;DPB=238;DPRA=0;EPP=137.642;EPPR=385.189;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2460;QR=7066;RO=176;RPL=0;RPP=137.642;RPPR=385.189;RPR=62;RUN=1;SAF=62;SAP=137.642;SAR=0;SRF=176;SRP=385.189;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:71:66,5:66:2660:5:203:0,-2.72007,-220.862 0/1:86:57,29:57:2292:29:1148:-77.712,0,-180.549 0/1:57:36,21:36:1426:21:822:-57.1319,0,-111.427 0/1:24:17,7:17:688:7:287:-18.9805,0,-55.0235 dDocent_Contig_2782 91 . T C 46985.6 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=1538;CIGAR=1X3M2D1M2X;DP=1570;DPB=7624.22;DPRA=0;EPP=3342.73;EPPR=0;GTI=0;LEN=1;MEANALT=3.5;MQM=59.8088;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=0.912874;PAIREDR=0;PAO=19156;PQA=655941;PQR=233430;PRO=7052;QA=52225;QR=0;RO=0;RPL=1538;RPP=3342.73;RPPR=0;RPR=0;RUN=1;SAF=1538;SAP=3342.73;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:514:0,497:0:0:497:16924:-1522.63,-149.612,0 1|1:404:0,399:0:0:399:13514:-1215.75,-120.111,0 1|1:456:0,448:0:0:448:15176:-1365,-134.861,0 1|1:196:0,194:0:0:194:6611:-594.583,-58.3998,0 dDocent_Contig_2787 8 . T A 38.2212 . AB=0.0986842;ABP=215.643;AC=1;AF=0.125;AN=8;AO=15;CIGAR=1X;DP=435;DPB=435;DPRA=1.61131;EPP=35.5824;EPPR=915.029;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=556;QR=16141;RO=420;RPL=0;RPP=35.5824;RPPR=915.029;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=420;SRP=915.029;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:152:137,15:137:5260:15:556:-4.61793,0,-427.642 0/0:135:135,0:135:5191:0:0:0,-40.639,-467.187 0/0:78:78,0:78:3002:0:0:0,-23.4803,-270.343 0/0:70:70,0:70:2688:0:0:0,-21.0721,-242.105 dDocent_Contig_2788 13 . T A 3742.81 . AB=0.326389;ABP=116.108;AC=4;AF=0.5;AN=8;AO=141;CIGAR=1X;DP=432;DPB=432;DPRA=0;EPP=309.188;EPPR=634.909;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5648;QR=11674;RO=291;RPL=0;RPP=309.188;RPPR=634.909;RPR=141;RUN=1;SAF=141;SAP=309.188;SAR=0;SRF=291;SRP=634.909;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:121:89,32:89:3599:32:1284:-79.4016,0,-287.496 0/1:117:75,42:75:3014:42:1688:-116.918,0,-236.118 0/1:116:77,39:77:3096:39:1568:-106.429,0,-243.787 0/1:78:50,28:50:1965:28:1108:-76.5223,0,-153.572 dDocent_Contig_2789 8 . T A 4814.96 . AB=0.63035;ABP=40.9392;AC=4;AF=0.5;AN=8;AO=162;CIGAR=1X;DP=257;DPB=257;DPRA=0;EPP=354.789;EPPR=209.3;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6253;QR=3627;RO=95;RPL=0;RPP=354.789;RPPR=209.3;RPR=162;RUN=1;SAF=162;SAP=354.789;SAR=0;SRF=95;SRP=209.3;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:72:7,65:7:268:65:2511:-204.514,0,-2.80924 0/1:62:29,33:29:1100:33:1272:-96.1065,0,-80.6358 0/1:79:41,38:41:1571:38:1464:-108.256,0,-117.876 0/1:44:18,26:18:688:26:1006:-77.6054,0,-49.006 dDocent_Contig_2790 107 . N C 149.919 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=5;CIGAR=1X;DP=5;DPB=5;DPRA=0;EPP=13.8677;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=163;QR=0;RO=0;RPL=0;RPP=13.8677;RPPR=0;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:5:0,5:0:0:5:163:-14.9913,-1.50515,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_2792 11 . T G 6212.33 . AB=0.796791;ABP=146.084;AC=5;AF=0.625;AN=8;AO=191;CIGAR=1X;DP=229;DPB=229;DPRA=0;EPP=417.762;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7559;QR=1513;RO=38;RPL=0;RPP=417.762;RPPR=85.5263;RPR=191;RUN=1;SAF=191;SAP=417.762;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:51:20,31:20:805:31:1237:-96.2488,0,-57.4112 0/1:78:9,69:9:358:69:2737:-222.964,0,-9.10069 1/1:42:0,42:0:0:42:1645:-148.279,-12.6433,0 0/1:58:9,49:9:350:49:1940:-157.333,0,-14.3938 dDocent_Contig_2793 16 . A G 59.1715 . AB=0.0943396;ABP=230.277;AC=1;AF=0.125;AN=8;AO=18;CIGAR=1X;DP=636;DPB=636;DPRA=0.652713;EPP=42.0968;EPPR=1344.98;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.9984;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=727;QR=24667;RO=618;RPL=0;RPP=42.0968;RPPR=1344.98;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=618;SRP=1344.98;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:215:215,0:215:8607:0:0:0,-64.7214,-774.12 0/1:159:144,15:144:5759:15:606:-7.01406,0,-470.241 0/0:173:171,2:171:6840:2:80:0,-44.4866,-607.689 0/0:89:88,1:88:3461:1:41:0,-22.6971,-307.446 dDocent_Contig_2794 20 . G A 6833.61 . AB=0.598446;ABP=35.5036;AC=4;AF=0.5;AN=8;AO=231;CIGAR=1X;DP=386;DPB=386;DPRA=0;EPP=504.62;EPPR=339.589;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.7097;NS=4;NUMALT=1;ODDS=2.77556e-17;PAIRED=0.961039;PAIREDR=0.993548;PAO=0;PQA=0;PQR=0;PRO=0;QA=8931;QR=6067;RO=155;RPL=0;RPP=504.62;RPPR=339.589;RPR=231;RUN=1;SAF=231;SAP=504.62;SAR=0;SRF=155;SRP=339.589;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:104:37,67:37:1460:67:2580:-201.053,0,-100.348 0/1:176:83,93:83:3222:93:3606:-271.63,0,-234.924 0/1:63:17,46:17:668:46:1808:-143.982,0,-41.4854 0/1:43:18,25:18:717:25:937:-71.6854,0,-51.9137 dDocent_Contig_2795 17 . T C 288.443 . AB=0.181818;ABP=80.3937;AC=3;AF=0.375;AN=8;AO=18;CIGAR=1X;DP=130;DPB=130;DPRA=0;EPP=42.0968;EPPR=246.215;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.555556;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=724;QR=4468;RO=112;RPL=0;RPP=42.0968;RPPR=246.215;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=112;SRP=246.215;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:18,3:18:722:3:123:-5.14316,0,-58.9828 0/1:56:46,10:46:1835:10:396:-19.1395,0,-148.494 0/0:42:40,2:40:1588:2:82:0,-4.86358,-135.374 0/1:11:8,3:8:323:3:123:-8.15346,0,-26.1278 dDocent_Contig_2796 18 . G A 375.505 . AB=0.0936073;ABP=1887.97;AC=2;AF=0.25;AN=8;AO=193;CIGAR=1X;DP=2273;DPB=2273;DPRA=0;EPP=422.104;EPPR=4519.67;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.998558;PAO=0;PQA=0;PQR=0;PRO=0;QA=7563;QR=80699;RO=2080;RPL=0;RPP=422.104;RPPR=4519.67;RPR=193;RUN=1;SAF=193;SAP=422.104;SAR=0;SRF=2080;SRP=4519.67;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:766:690,76:690:27014:76:2958:-35.7456,0,-2198.45 0/0:676:630,46:630:24386:46:1799:0,-41.3637,-2030.69 0/1:548:501,47:501:19261:47:1875:-3.99809,0,-1567.15 0/0:283:259,24:259:10038:24:931:0,-1.09778,-818.801 dDocent_Contig_2797 1 . N G 306.355 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=8;CIGAR=1X;DP=8;DPB=8;DPRA=0;EPP=20.3821;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=6.77626e-21;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=322;QR=0;RO=0;RPL=0;RPP=20.3821;RPPR=0;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:1:0,1:0:0:1:41:-4.09457,-0.30103,0 1/1:4:0,4:0:0:4:164:-15.1499,-1.20412,0 1/1:3:0,3:0:0:3:117:-10.9099,-0.90309,0 dDocent_Contig_2798 12 . A G 16962.5 . AB=0.0487805;ABP=293.034;AC=0;AF=0;AN=8;AO=8;CIGAR=1M6I1M1X3M;DP=630;DPB=678.167;DPRA=0;EPP=20.3821;EPPR=100.727;GTI=0;LEN=1;MEANALT=3.5;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=321;QR=1786;RO=45;RPL=0;RPP=20.3821;RPPR=100.727;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:222:18,0,101,101:18:710:0,101,101:0,3934,4002:-588.8,-594.219,-652.634,-270.94,-329.355,-298.951,-264.861,-323.277,0,-292.873 0|0:244:13,0,80,150:13:521:0,80,150:0,3070,6025:-701.543,-705.456,-748.38,-453.533,-496.456,-472.374,-208.992,-251.918,0,-206.764 0|0:112:13,6,36,56:13:514:6,36,56:239,1413,2235:-254.043,-238.275,-278.769,-141.759,-164.378,-173.222,-73.8952,-96.5145,0,-99.3386 0|0:52:1,2,23,26:1:41:2,23,26:82,914,1036:-156.855,-150.387,-153.17,-81.9124,-78.5279,-78.3732,-71.8487,-68.4642,0,-67.4065 dDocent_Contig_2799 42 . T C 41.2913 . AB=0.137931;ABP=36.0317;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=79;DPB=79;DPRA=1.74;EPP=11.6962;EPPR=157.301;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=58.9867;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.973333;PAO=0;PQA=0;PQR=0;PRO=0;QA=151;QR=2990;RO=75;RPL=0;RPP=11.6962;RPPR=148.962;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=74;SRP=157.301;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:26:26,0:26:1042:0:0:0,-7.82678,-94.0717 0/0:11:11,0:11:436:0:0:0,-3.31133,-39.5915 0/1:29:25,4:25:1002:4:151:-5.226,0,-78.6608 0/0:13:13,0:13:510:0:0:0,-3.91339,-46.2426 dDocent_Contig_2801 20 . C T 94.8213 . AB=0.140351;ABP=67.0497;AC=2;AF=0.25;AN=8;AO=10;CIGAR=1X;DP=98;DPB=98;DPRA=2.17949;EPP=24.725;EPPR=194.1;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=390;QR=3497;RO=88;RPL=0;RPP=24.725;RPPR=194.1;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=88;SRP=194.1;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:40:35,5:35:1367:5:195:-5.88283,0,-111.237 0/0:28:26,2:26:1038:2:78:0,-1.02554,-86.3079 0/0:13:13,0:13:525:0:0:0,-3.91339,-47.5972 0/1:17:14,3:14:567:3:117:-5.7927,0,-46.2551 dDocent_Contig_2802 66 . T C 706.351 . AB=0.143646;ABP=402.297;AC=3;AF=0.375;AN=8;AO=55;CIGAR=1X;DP=499;DPB=499;DPRA=0;EPP=122.441;EPPR=967.144;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2146;QR=17193;RO=444;RPL=55;RPP=122.441;RPPR=967.144;RPR=0;RUN=1;SAF=55;SAP=122.441;SAR=0;SRF=444;SRP=967.144;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:137:134,3:134:5174:3:122:0,-29.8686,-454.199 0/1:158:130,28:130:5023:28:1091:-50.9189,0,-404.409 0/1:119:103,16:103:4001:16:635:-21.6623,0,-324.265 0/1:85:77,8:77:2995:8:298:-1.57943,0,-244.071 dDocent_Contig_2803 72 . C T 53.3789 . AB=0.125;ABP=61.6401;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=125;DPB=125;DPRA=1.87013;EPP=16.0391;EPPR=261.416;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=228;QR=4421;RO=119;RPL=6;RPP=16.0391;RPPR=261.416;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=119;SRP=261.416;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:33:33,0:33:1229:0:0:0,-9.93399,-110.905 0/1:48:42,6:42:1582:6:228:-6.4348,0,-128.204 0/0:26:26,0:26:966:0:0:0,-7.82678,-87.2518 0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2904 dDocent_Contig_2804 23 . A G 60.7451 . AB=0.136364;ABP=53.5464;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=211;DPB=211;DPRA=0.790419;EPP=16.0391;EPPR=448.162;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=223;QR=7994;RO=205;RPL=0;RPP=16.0391;RPPR=448.162;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=205;SRP=448.162;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:67:67,0:67:2621:0:0:0,-20.169,-236.036 0/0:69:69,0:69:2699:0:0:0,-20.7711,-243.046 0/1:44:38,6:38:1459:6:223:-7.17142,0,-118.306 0/0:31:31,0:31:1215:0:0:0,-9.33193,-109.632 dDocent_Contig_2805 12 . T C 8254.06 . AB=0.820084;ABP=215.696;AC=5;AF=0.625;AN=8;AO=255;CIGAR=1X;DP=302;DPB=302;DPRA=0;EPP=556.736;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=10171;QR=1886;RO=47;RPL=0;RPP=556.736;RPPR=105.07;RPR=255;RUN=1;SAF=255;SAP=556.736;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:128:22,106:22:875:106:4219:-341.135,0,-40.5244 0/1:79:18,61:18:729:61:2432:-195.241,0,-42.1534 1/1:63:4,59:4:163:59:2364:-197.853,-3.90646,0 0/1:32:3,29:3:119:29:1156:-94.6831,0,-1.46205 dDocent_Contig_2806 25 . C A 37.4753 . AB=0.0963855;ABP=120.453;AC=1;AF=0.125;AN=8;AO=12;CIGAR=1X;DP=242;DPB=242;DPRA=1.81395;EPP=29.068;EPPR=502.449;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=487;QR=9268;RO=230;RPL=0;RPP=29.068;RPPR=502.449;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=230;SRP=502.449;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:83:75,8:75:3032:8:324:-4.54333,0,-247.966 0/0:73:69,4:69:2790:4:163:0,-6.91676,-236.141 0/0:60:60,0:60:2438:0:0:0,-18.0618,-219.553 0/0:26:26,0:26:1008:0:0:0,-7.82678,-91.0124 dDocent_Contig_2807 180 . T C 5391.81 . AB=0.402041;ABP=43.8517;AC=4;AF=0.5;AN=8;AO=197;CIGAR=1X;DP=490;DPB=490;DPRA=0;EPP=430.79;EPPR=639.252;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7676;QR=11371;RO=293;RPL=197;RPP=430.79;RPPR=639.252;RPR=0;RUN=1;SAF=0;SAP=430.79;SAR=197;SRF=0;SRP=639.252;SRR=293;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:147:83,64:83:3223:64:2483:-179.374,0,-245.903 0/1:135:82,53:82:3189:53:2059:-144.864,0,-246.451 0/1:151:100,51:100:3874:51:1991:-133.939,0,-303.214 0/1:57:28,29:28:1085:29:1143:-85.9934,0,-80.7794 dDocent_Contig_2808 14 . G A 2517.28 . AB=0.377049;ABP=35.0484;AC=3;AF=0.375;AN=8;AO=92;CIGAR=1X;DP=332;DPB=332;DPRA=0.924242;EPP=202.786;EPPR=524.164;GTI=0;LEN=1;MEANALT=1;MQM=57.5217;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3652;QR=9520;RO=240;RPL=0;RPP=202.786;RPPR=524.164;RPR=92;RUN=1;SAF=92;SAP=202.786;SAR=0;SRF=240;SRP=524.164;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:88:88,0:88:3524:0:0:0,-26.4906,-317.188 0/1:87:70,17:70:2735:17:676:-34.9662,0,-220.073 0/1:84:30,54:30:1203:54:2142:-167.064,0,-83.2528 0/1:73:52,21:52:2058:21:834:-53.2894,0,-163.428 dDocent_Contig_2809 9 . C T 8720.8 . AB=0.431193;ABP=16.4575;AC=4;AF=0.5;AN=8;AO=141;CIGAR=1X1M1X;DP=327;DPB=327;DPRA=0;EPP=309.188;EPPR=63.8115;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=5539;QR=1094;RO=28;RPL=0;RPP=309.188;RPPR=63.8115;RPR=141;RUN=1;SAF=141;SAP=309.188;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:99:11,41,47:11:425:41,47:1623,1879:-250.141,-119.874,-142.432,-98.6875,0,-119.44 1|0:94:10,34,50:10:392:34,50:1334,2008:-239.923,-133.231,-155.23,-77.4712,0,-94.6549 1|0:78:1,39,38:1:40:39,38:1523,1525:-247.238,-122.35,-113.905,-121.89,0,-113.746 1|0:56:6,27,23:6:237:27,23:1059,900:-139.766,-54.4832,-65.8586,-67.5835,0,-80.1627 dDocent_Contig_2810 7 . T C 8355.4 . AB=0.727273;ABP=91.8433;AC=7;AF=0.875;AN=8;AO=253;CIGAR=1X2M;DP=310;DPB=310;DPRA=0;EPP=552.393;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1.75;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.881423;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=9664;QR=1321;RO=35;RPL=0;RPP=552.393;RPPR=79.0118;RPR=253;RUN=1;SAF=253;SAP=552.393;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:87:0,3,84:0:0:3,84:117,3208:-288.486,-278.975,-278.072,-25.2865,-15.3906,0 1|1:111:7,14,85:7:269:14,85:537,3228:-284.382,-242.621,-260.49,-21.7843,0,-18.2812 0|1:87:28,0,59:28:1052:0,59:0,2263:-177.702,-186.131,-272.312,0,-86.5596,-68.7988 1|1:25:0,0,25:0:0:0,25:0,965:-87.1639,-87.1639,-87.1639,-7.52575,-7.52575,0 dDocent_Contig_2811 18 . G A 2494.93 . AB=0.231429;ABP=222.292;AC=3;AF=0.375;AN=8;AO=81;CIGAR=1M1X;DP=350;DPB=350;DPRA=0;EPP=161.957;EPPR=463.362;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=0.962963;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3252;QR=8480;RO=212;RPL=0;RPP=178.9;RPPR=463.362;RPR=81;RUN=1;SAF=79;SAP=161.957;SAR=2;SRF=212;SRP=463.362;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:134:66,0,48,20:66:2615:0,48,20:0,1934,791:-139.537,-159.405,-374.625,0,-215.222,-200.773,-94.319,-309.537,-150.134,-303.516 0|0:109:65,11,9,24:65:2616:11,9,24:443,365,971:-60.4916,-43.5472,-255.829,-49.958,-229.04,-262.842,0,-179.082,-185.493,-208.369 0|1:72:52,0,18,2:52:2085:0,18,2:0,708,82:-42.5605,-58.2141,-229.993,0,-171.766,-166.347,-51.4443,-223.224,-164.997,-222.622 0|1:35:29,0,6,0:29:1164:0,6,0:0,245,0:-11.8934,-20.6233,-116.528,0,-96.3115,-94.5053,-20.6233,-116.528,-96.3115,-116.528 dDocent_Contig_2812 98 . N T 657.788 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=21;CIGAR=1X;DP=21;DPB=21;DPRA=0;EPP=48.6112;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=721;QR=0;RO=0;RPL=21;RPP=48.6112;RPPR=0;RPR=0;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1:0,1:0:0:1:26:-2.59983,-0.30103,0 1/1:20:0,20:0:0:20:695:-62.873,-6.0206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_2813 1 . N G 179.235 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=5;CIGAR=1X;DP=5;DPB=5;DPRA=0;EPP=13.8677;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=195;QR=0;RO=0;RPL=0;RPP=13.8677;RPPR=0;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:5:0,5:0:0:5:195:-17.923,-1.50515,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_2814 17 . A G 12942.7 . AB=0.764103;ABP=239.289;AC=5;AF=0.625;AN=8;AO=400;CIGAR=1X;DP=495;DPB=495;DPRA=0;EPP=871.599;EPPR=209.3;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=15852;QR=3784;RO=95;RPL=0;RPP=871.599;RPPR=209.3;RPR=400;RUN=1;SAF=400;SAP=871.599;SAR=0;SRF=95;SRP=209.3;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:128:15,113:15:606:113:4463:-363.085,0,-16.3466 0/1:212:65,147:65:2587:147:5833:-460.94,0,-169.155 1/1:105:3,102:3:122:102:4056:-353.649,-20.2357,0 0/1:50:12,38:12:469:38:1500:-120.192,0,-27.5051 dDocent_Contig_2815 38 . A G 19072.2 . AB=0.0666667;ABP=345.524;AC=0;AF=0;AN=8;AO=14;CIGAR=1M2D2M1X10M;DP=863;DPB=814.5;DPRA=0;EPP=33.4109;EPPR=241.872;GTI=0;LEN=1;MEANALT=5.5;MQM=60;MQMR=60;NS=4;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=553;QR=4319;RO=110;RPL=0;RPP=33.4109;RPPR=241.872;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=110;SRP=241.872;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:422:40,0,323,25,11:40:1579:0,323,25,11:0,12279,967,428:-994.839,-1006.88,-1136.81,0,-129.939,-32.7061,-927.459,-1057.39,-50.5148,-1049.86,-971.706,-1101.63,-94.7631,-1022.21,-1098.32 0|0:231:44,0,150,9,13:44:1718:0,150,9,13:0,5583,357,482:-443.623,-456.868,-598.101,0,-141.235,-96.0806,-427.481,-568.715,-111.848,-566.006,-417.436,-558.67,-101.806,-529.283,-554.756 0|0:94:9,8,72,1,0:9:348:8,72,1,0:313,2688,35,0:-217.35,-194.321,-220.496,0,-2.84425,-6.91671,-217.212,-220.056,-25.7442,-245.493,-220.059,-222.904,-28.5909,-245.794,-248.641 0|0:116:17,6,88,0,0:17:674:6,88,0,0:240,3203,0,0:-256.395,-241.74,-295.419,0,-35.7246,-29.0085,-261.512,-297.225,-55.4991,-316.997,-261.512,-297.225,-55.4991,-316.997,-316.997 dDocent_Contig_2816 46 . C T 3738.11 . AB=0.841463;ABP=86.0559;AC=6;AF=0.75;AN=8;AO=113;CIGAR=1X;DP=128;DPB=128;DPRA=0;EPP=248.387;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4525;QR=612;RO=15;RPL=0;RPP=248.387;RPPR=35.5824;RPR=113;RUN=1;SAF=113;SAP=248.387;SAR=0;SRF=15;SRP=35.5824;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:39:6,33:6:246:33:1335:-108.667,0,-10.7799 0/1:43:7,36:7:285:36:1444:-117.264,0,-13.0801 1/1:27:2,25:2:81:25:992:-81.8917,-0.442076,0 1/1:19:0,19:0:0:19:754:-68.1808,-5.71957,0 dDocent_Contig_2817 7 . C A 153.531 . AB=0.15942;ABP=72.5289;AC=2;AF=0.25;AN=8;AO=20;CIGAR=1X;DP=196;DPB=196;DPRA=0;EPP=46.4397;EPPR=385.189;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.8;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=736;QR=6735;RO=176;RPL=0;RPP=46.4397;RPPR=385.189;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=176;SRP=385.189;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:66:61,5:61:2356:5:193:0,-2.12662,-194.507 0/1:41:37,4:37:1413:4:143:-0.87724,0,-115.106 0/0:61:57,4:57:2159:4:128:0,-6.53237,-182.708 0/1:28:21,7:21:807:7:272:-16.4184,0,-64.5272 dDocent_Contig_2818 8 . T G 531.419 . AB=0.0666667;ABP=51.9408;AC=0;AF=0;AN=8;AO=2;CIGAR=2M3X1M2X1M1X1M2I4M;DP=78;DPB=78.2;DPRA=0;EPP=7.35324;EPPR=74.6689;GTI=0;LEN=1;MEANALT=5;MQM=60;MQMR=60;NS=4;NUMALT=7;ODDS=0;PAIRED=1;PAIREDR=0.969697;PAO=0;PQA=0;PQR=0;PRO=0;QA=78;QR=1295;RO=33;RPL=0;RPP=7.35324;RPPR=74.6689;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:30:9,3,2,2,0,3,0,11:9:350:3,2,2,0,3,0,11:115,78,75,0,123,0,440:-33.5382,-26.8192,-54.6742,-29.8363,-49.1659,-57.993,-30.1063,-49.4356,-52.4532,-58.2625,-36.2475,-55.5773,-58.595,-58.8646,-65.0065,-26.0929,-45.4232,-48.4409,-48.7105,-54.8525,-53.9494,-36.2475,-55.5773,-58.595,-58.8646,-65.0065,-54.8525,-65.0065,0,-19.331,-22.3484,-22.6186,-28.7601,-18.6041,-28.7601,-25.4488 0|0:7:5,0,0,0,0,2,0,0:5:192:0,0,0,0,2,0,0:0,0,0,0,81,0,0:-5.57852,-7.08367,-22.8296,-7.08367,-22.8296,-22.8296,-7.08367,-22.8296,-22.8296,-22.8296,-7.08367,-22.8296,-22.8296,-22.8296,-22.8296,0,-16.1445,-16.1445,-16.1445,-16.1445,-15.5424,-7.08367,-22.8296,-22.8296,-22.8296,-22.8296,-16.1445,-22.8296,-7.08367,-22.8296,-22.8296,-22.8296,-22.8296,-16.1445,-22.8296,-22.8296 0|0:16:8,0,0,4,0,2,0,0:8:319:0,0,4,0,2,0,0:0,0,160,0,81,0,0:-10.7696,-13.1779,-39.4474,-13.1779,-39.4474,-39.4474,0,-26.2673,-26.2673,-25.0632,-13.1779,-39.4474,-39.4474,-26.2673,-39.4474,-6.49787,-32.7677,-32.7677,-19.5873,-32.7677,-32.1656,-13.1779,-39.4474,-39.4474,-26.2673,-39.4474,-32.7677,-39.4474,-13.1779,-39.4474,-39.4474,-26.2673,-39.4474,-32.7677,-39.4474,-39.4474 0|0:25:11,0,0,2,2,4,3,3:11:434:0,0,2,2,4,3,3:0,0,77,79,142,116,122:-8.2407,-11.552,-47.2675,-11.552,-47.2675,-47.2675,-5.22957,-40.9457,-40.9457,-40.3436,-5.04942,-40.7663,-40.7663,-34.4444,-40.1643,0,-35.7106,-35.7106,-29.3895,-29.21,-34.5065,-2.02271,-37.7394,-37.7394,-31.4176,-31.2382,-26.1836,-36.8363,-1.48233,-37.2018,-37.2018,-30.8797,-30.7002,-25.6454,-27.6733,-36.2987 dDocent_Contig_2819 9 . T C 7725.61 . AB=0.53507;ABP=8.34107;AC=4;AF=0.5;AN=8;AO=267;CIGAR=1X;DP=499;DPB=499;DPRA=0;EPP=582.793;EPPR=506.792;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.952586;PAO=0;PQA=0;PQR=0;PRO=0;QA=10300;QR=8858;RO=232;RPL=0;RPP=582.793;RPPR=506.792;RPR=267;RUN=1;SAF=267;SAP=582.793;SAR=0;SRF=232;SRP=506.792;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:159:87,72:87:3343:72:2781:-202.6,0,-253.144 0/1:176:67,109:67:2570:109:4198:-324.91,0,-178.51 0/1:101:47,54:47:1763:54:2089:-157.832,0,-128.517 0/1:63:31,32:31:1182:32:1232:-92.208,0,-87.7117 dDocent_Contig_2820 98 . N C 47.5407 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=4.60517;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=50;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:50:-4.74974,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_2821 32 . T A 58.2888 . AB=0.101852;ABP=151.716;AC=2;AF=0.25;AN=8;AO=13;CIGAR=1X;DP=243;DPB=243;DPRA=0.679167;EPP=31.2394;EPPR=502.449;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=513;QR=9181;RO=230;RPL=0;RPP=31.2394;RPPR=502.449;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=230;SRP=502.449;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:80:80,0:80:3180:0:0:0,-24.0824,-286.281 0/1:81:73,8:73:2915:8:325:-5.23621,0,-238.072 0/0:55:53,2:53:2127:2:71:0,-9.81722,-184.868 0/1:27:24,3:24:959:3:117:-2.78202,0,-78.4795 dDocent_Contig_2822 16 . C T 82.3553 . AB=0.142857;ABP=49.5419;AC=1;AF=0.125;AN=8;AO=10;CIGAR=1X;DP=200;DPB=200;DPRA=0.941748;EPP=24.725;EPPR=415.59;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=398;QR=7562;RO=190;RPL=0;RPP=24.725;RPPR=415.59;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=190;SRP=415.59;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:89:89,0:89:3533:0:0:0,-26.7917,-317.997 0/0:55:51,4:51:2034:4:158:0,-1.95689,-168.652 0/1:42:36,6:36:1435:6:240:-9.33239,0,-116.76 0/0:14:14,0:14:560:0:0:0,-4.21442,-50.7427 dDocent_Contig_2823 163 . C G 48.5719 . AB=0.166667;ABP=20.3821;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=51;DPB=51;DPRA=1.63636;EPP=9.52472;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=1853;RO=48;RPL=3;RPP=9.52472;RPPR=107.241;RPR=0;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=107.241;SRR=48;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5,0:5:199:0:0:0,-1.50515,-18.2887 0/0:17:17,0:17:645:0:0:0,-5.11751,-58.3732 0/0:11:11,0:11:419:0:0:0,-3.31133,-38.0588 0/1:18:15,3:15:590:3:122:-5.95395,0,-48.0221 dDocent_Contig_2824 7 . C T 31.4242 . AB=0.15;ABP=24.2907;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=331;DPB=331;DPRA=0.192926;EPP=9.52472;EPPR=715.253;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=110;QR=12604;RO=328;RPL=0;RPP=9.52472;RPPR=715.253;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=328;SRP=715.253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:108:108,0:108:4160:0:0:0,-32.5112,-374.476 0/0:138:138,0:138:5284:0:0:0,-41.5421,-475.55 0/0:65:65,0:65:2497:0:0:0,-19.5669,-224.926 0/1:20:17,3:17:663:3:110:-4.23901,0,-53.9865 dDocent_Contig_2825 7 . C T 2518.8 . AB=0.385827;ABP=31.7695;AC=4;AF=0.5;AN=8;AO=98;CIGAR=1X3M1X;DP=254;DPB=254;DPRA=0;EPP=117.877;EPPR=337.417;GTI=0;LEN=1;MEANALT=1.5;MQM=58.0918;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.765306;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3691;QR=5942;RO=154;RPL=0;RPP=215.815;RPPR=337.417;RPR=98;RUN=1;SAF=85;SAP=117.877;SAR=13;SRF=154;SRP=337.417;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:74:40,34:40:1543:34:1286:-93.4027,0,-116.865 0|1:73:43,30:43:1652:30:1148:-81.6335,0,-126.967 0|1:68:45,21:45:1740:21:766:-49.0564,0,-136.77 0|1:39:26,13:26:1007:13:491:-32.7768,0,-79.2006 dDocent_Contig_2826 15 . C A 102.161 . AB=0.116279;ABP=112.998;AC=1;AF=0.125;AN=8;AO=10;CIGAR=1X;DP=240;DPB=240;DPRA=1.67532;EPP=24.725;EPPR=502.449;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.973913;PAO=0;PQA=0;PQR=0;PRO=0;QA=406;QR=9240;RO=230;RPL=0;RPP=24.725;RPPR=502.449;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=230;SRP=502.449;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:86:76,10:76:3052:10:406:-11.012,0,-248.872 0/0:63:63,0:63:2529:0:0:0,-18.9649,-227.74 0/0:42:42,0:42:1675:0:0:0,-12.6433,-150.972 0/0:49:49,0:49:1984:0:0:0,-14.7505,-178.746 dDocent_Contig_2827 7 . C T 93.2669 . AB=0.132075;ABP=65.3275;AC=0;AF=0;AN=8;AO=7;CIGAR=1X3M1X2M1X;DP=218;DPB=218;DPRA=0.828125;EPP=18.2106;EPPR=383.018;GTI=0;LEN=1;MEANALT=4;MQM=34;MQMR=60;NS=4;NUMALT=4;ODDS=0;PAIRED=0;PAIREDR=0.977143;PAO=0;PQA=0;PQR=0;PRO=0;QA=273;QR=6818;RO=175;RPL=0;RPP=18.2106;RPPR=383.018;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=175;SRP=383.018;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:64:57,6,0,0,1:57:2209:6,0,0,1:102,0,0,41:0,-11.613,-191.252,-17.1587,-193.058,-198.811,-17.1587,-193.058,-198.811,-198.811,-13.7362,-189.674,-195.427,-195.427,-195.126 0|0:66:52,7,0,6,0:52:2031:7,0,6,0:143,0,240,0:-2.69186,-9.5664,-174.438,-18.3454,-176.545,-185.402,0,-158.275,-167.129,-165.323,-18.3454,-176.545,-185.402,-167.129,-185.402 0|0:53:37,1,7,2,6:37:1446:1,7,2,6:21,273,82,240:-8.65894,-18.4889,-137.085,-1.28328,-118.862,-118.07,-13.4715,-131.065,-113.856,-131.779,0,-117.615,-100.406,-112.609,-117.124 0|0:35:29,3,0,0,3:29:1132:3,0,0,3:45,0,0,122:-1.47616,-7.996,-100.133,-10.206,-101.036,-103.366,-10.206,-101.036,-103.366,-103.366,0,-90.9717,-93.2993,-93.2993,-92.3962 dDocent_Contig_2828 44 . A G 11604.2 . AB=0.709302;ABP=101.181;AC=6;AF=0.75;AN=8;AO=372;CIGAR=1X;DP=459;DPB=459;DPRA=0;EPP=802.135;EPPR=191.928;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.994624;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=14231;QR=3335;RO=87;RPL=2;RPP=793.52;RPPR=191.928;RPR=370;RUN=1;SAF=371;SAP=802.135;SAR=1;SRF=87;SRP=191.928;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:131:48,83:48:1854:83:3203:-248.963,0,-127.657 0/1:127:27,100:27:1035:100:3811:-304.821,0,-55.2196 1/1:130:9,121:9:327:121:4609:-385.033,-9.36043,0 1/1:71:3,68:3:119:68:2608:-223.795,-10.2781,0 dDocent_Contig_2829 60 . G C 679.904 . AB=0.272;ABP=59.4512;AC=4;AF=0.5;AN=8;AO=34;CIGAR=1X;DP=125;DPB=125;DPRA=0;EPP=76.8404;EPPR=200.614;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1212;QR=3178;RO=91;RPL=34;RPP=76.8404;RPPR=200.614;RPR=0;RUN=1;SAF=34;SAP=76.8404;SAR=0;SRF=91;SRP=200.614;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:52:27,25:27:920:25:878:-63.6739,0,-67.4399 0/1:39:35,4:35:1243:4:147:-1.84909,0,-100.421 0/1:19:17,2:17:602:2:75:-1.40002,0,-48.7861 0/1:15:12,3:12:413:3:112:-5.93085,0,-32.9808 dDocent_Contig_2830 10 . G A 5872.93 . AB=0.0460526;ABP=275.073;AC=0;AF=0;AN=8;AO=7;CIGAR=1X1M1X;DP=314;DPB=314;DPRA=0;EPP=18.2106;EPPR=250.558;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=277;QR=4428;RO=114;RPL=0;RPP=18.2106;RPPR=250.558;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=114;SRP=250.558;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:130:36,0,94:36:1392:0,94:0,3690:-293.003,-303.84,-418.171,0,-114.719,-86.4222 0|0:113:40,4,69:40:1553:4,69:159,2723:-212.003,-210.953,-337.347,0,-114.5,-106.821 0|0:39:19,3,17:19:748:3,17:118,679:-50.2112,-46.2255,-106.851,0,-51.8259,-56.4145 0|0:32:19,0,13:19:735:0,13:0,515:-37.0652,-42.7848,-103.149,0,-60.7562,-56.8428 dDocent_Contig_2831 21 . G A 34.5134 . AB=0.133333;ABP=38.0434;AC=2;AF=0.25;AN=8;AO=5;CIGAR=1X;DP=94;DPB=94;DPRA=0.513514;EPP=13.8677;EPPR=196.271;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=197;QR=3457;RO=89;RPL=0;RPP=13.8677;RPPR=196.271;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=89;SRP=196.271;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:27:26,1:26:1014:1:41:0,-4.03324,-87.4554 0/0:37:37,0:37:1428:0:0:0,-11.1381,-128.78 0/1:19:17,2:17:666:2:74:-1.30445,0,-54.5497 0/1:11:9,2:9:349:2:82:-4.46835,0,-28.4504 dDocent_Contig_2832 12 . G C 385.142 . AB=0.171429;ABP=167.112;AC=3;AF=0.375;AN=8;AO=30;CIGAR=1X;DP=219;DPB=219;DPRA=1.32576;EPP=68.1545;EPPR=413.419;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1042;QR=7365;RO=189;RPL=0;RPP=68.1545;RPPR=413.419;RPR=30;RUN=1;SAF=0;SAP=68.1545;SAR=30;SRF=189;SRP=413.419;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:67:52,15:52:2023:15:522:-27.1411,0,-162.104 0/1:65:57,8:57:2244:8:275:-5.51787,0,-182.577 0/1:43:36,7:36:1432:7:245:-9.44694,0,-116.196 0/0:44:44,0:44:1666:0:0:0,-13.2453,-150.18 dDocent_Contig_2833 11 . A T 55.903 . AB=0.3;ABP=6.48466;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X1M1X;DP=34;DPB=34;DPRA=1.25;EPP=9.52472;EPPR=68.1545;GTI=0;LEN=1;MEANALT=2;MQM=44;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.966667;PAO=0;PQA=0;PQR=0;PRO=0;QA=107;QR=1181;RO=30;RPL=0;RPP=9.52472;RPPR=68.1545;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:10:10,0:10:392:0:0:0,-3.0103,-35.6349 0|0:6:6,0:6:235:0:0:0,-1.80618,-21.52 0|1:10:6,3:6:239:3:107:-6.68712,0,-18.7672 0|0:8:8,0:8:315:0:0:0,-2.40824,-28.7136 dDocent_Contig_2834 14 . G T 74.0545 . AB=0.12069;ABP=75.4926;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=123;DPB=123;DPRA=2.67692;EPP=18.2106;EPPR=254.901;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=281;QR=4566;RO=116;RPL=0;RPP=18.2106;RPPR=254.901;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=116;SRP=254.901;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:58:51,7:51:1987:7:281:-8.20133,0,-161.565 0/0:38:38,0:38:1490:0:0:0,-11.4391,-134.346 0/0:16:16,0:16:643:0:0:0,-4.81648,-58.2023 0/0:11:11,0:11:446:0:0:0,-3.31133,-40.4951 dDocent_Contig_2835 10 . G A 6214.97 . AB=0.734513;ABP=110.969;AC=5;AF=0.625;AN=8;AO=196;CIGAR=1X;DP=258;DPB=258;DPRA=0;EPP=428.619;EPPR=137.642;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=58.5;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=0.870968;PAO=0;PQA=0;PQR=0;PRO=0;QA=7778;QR=2448;RO=62;RPL=0;RPP=428.619;RPPR=137.642;RPR=196;RUN=1;SAF=196;SAP=428.619;SAR=0;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:79:14,65:14:550:65:2581:-208.64,0,-26.06 0/1:82:22,60:22:867:60:2409:-192.276,0,-50.3387 0/1:65:24,41:24:950:41:1611:-125.65,0,-66.2336 1/1:32:2,30:2:81:30:1177:-98.5225,-1.94723,0 dDocent_Contig_2836 86 . G T 68.6892 . AB=0.162162;ABP=39.6906;AC=2;AF=0.25;AN=8;AO=7;CIGAR=1X;DP=63;DPB=63;DPRA=3.16667;EPP=18.2106;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=248;QR=1914;RO=56;RPL=7;RPP=18.2106;RPPR=124.613;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:20:19,1:19:649:1:35:0,-2.52197,-55.232 0/1:28:23,5:23:782:5:178:-7.93981,0,-62.2658 0/1:9:8,1:8:273:1:35:-0.789359,0,-22.1932 0/0:6:6,0:6:210:0:0:0,-1.80618,-19.2425 dDocent_Contig_2837 79 . C T 44.8485 . AB=0.2;ABP=14.7363;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=98;DPB=98;DPRA=0.542169;EPP=9.52472;EPPR=209.3;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=105;QR=3249;RO=95;RPL=3;RPP=9.52472;RPPR=209.3;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=95;SRP=209.3;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:12,3:12:418:3:105:-5.28071,0,-33.4384 0/0:44:44,0:44:1494:0:0:0,-13.2453,-134.754 0/0:21:21,0:21:724:0:0:0,-6.32163,-65.4809 0/0:18:18,0:18:613:0:0:0,-5.41854,-55.4913 dDocent_Contig_2838 98 . N T 599.895 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=19;CIGAR=3X;DP=19;DPB=19.3333;DPRA=0;EPP=44.2683;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=1;PQA=25;PQR=0;PRO=0;QA=653;QR=0;RO=0;RPL=19;RPP=44.2683;RPPR=0;RPR=0;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:16:0,16:0:0:16:548:-49.6453,-4.81648,0 .:.:.:.:.:.:.:. 1|1:2:0,2:0:0:2:70:-6.36412,-0.60206,0 1|1:1:0,1:0:0:1:35:-3.49863,-0.30103,0 dDocent_Contig_2839 16 . G T 78.3723 . AB=0.111111;ABP=121.235;AC=2;AF=0.25;AN=8;AO=12;CIGAR=1X;DP=195;DPB=195;DPRA=0;EPP=29.068;EPPR=400.39;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.7541;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.743169;PAO=0;PQA=0;PQR=0;PRO=0;QA=483;QR=7267;RO=183;RPL=0;RPP=29.068;RPPR=400.39;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=183;SRP=400.39;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:79:78,1:78:3096:1:39:0,-19.8848,-274.813 0/1:31:27,4:27:1088:4:163:-5.7265,0,-88.7595 0/1:59:53,6:53:2101:6:241:-4.30442,0,-171.478 0/0:26:25,1:25:982:1:40:0,-3.8311,-84.6799 dDocent_Contig_2840 196 . A G 47.0782 . AB=0.142857;ABP=34.0313;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=124;DPB=124;DPRA=0.878788;EPP=16.0391;EPPR=259.244;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.983051;PAO=0;PQA=0;PQR=0;PRO=0;QA=232;QR=4539;RO=118;RPL=6;RPP=16.0391;RPPR=259.244;RPR=0;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=259.244;SRR=118;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:44:44,0:44:1684:0:0:0,-13.2453,-151.818 0/1:28:24,4:24:925:4:154:-5.80462,0,-75.1374 0/0:30:28,2:28:1088:2:78:0,-1.62743,-90.8187 0/0:22:22,0:22:842:0:0:0,-6.62266,-76.0986 dDocent_Contig_2841 7 . C A 324.206 . AB=0.268657;ABP=34.1563;AC=2;AF=0.25;AN=8;AO=23;CIGAR=1X1M1X;DP=140;DPB=140;DPRA=0;EPP=52.9542;EPPR=257.073;GTI=0;LEN=1;MEANALT=1;MQM=36.7826;MQMR=59.8034;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.991453;PAO=0;PQA=0;PQR=0;PRO=0;QA=870;QR=4490;RO=117;RPL=0;RPP=52.9542;RPPR=257.073;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=117;SRP=257.073;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:55:51,4:51:1964:4:150:0,-3.74931,-164.193 0|1:32:24,8:24:925:8:299:-14.4016,0,-73.9346 0|0:18:17,1:17:644:1:39:0,-1.57003,-54.0736 0|1:35:25,10:25:957:10:382:-20.2127,0,-75.9094 dDocent_Contig_2842 52 . T C 443.545 . AB=0.190751;ABP=146.717;AC=3;AF=0.375;AN=8;AO=36;CIGAR=1X;DP=233;DPB=233;DPRA=0;EPP=81.1833;EPPR=426.447;GTI=0;LEN=1;MEANALT=1.25;MQM=53.9444;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.888889;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1330;QR=7482;RO=195;RPL=36;RPP=81.1833;RPPR=426.447;RPR=0;RUN=1;SAF=36;SAP=81.1833;SAR=0;SRF=195;SRP=426.447;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:78:69,9:69:2644:9:328:-4.37791,0,-214.669 0/0:60:57,3:57:2187:3:110:0,-7.80219,-186.794 0/1:61:44,15:44:1697:15:552:-22.8483,0,-135.076 0/1:34:25,9:25:954:9:340:-20.7199,0,-75.9372 dDocent_Contig_2843 15 . C T 56.412 . AB=0.1;ABP=141.985;AC=1;AF=0.125;AN=8;AO=10;CIGAR=1X;DP=275;DPB=275;DPRA=1.71429;EPP=24.725;EPPR=578.45;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=402;QR=10621;RO=265;RPL=0;RPP=24.725;RPPR=578.45;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=265;SRP=578.45;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:100:90,10:90:3599:10:402:-6.43708,0,-293.839 0/0:70:70,0:70:2803:0:0:0,-21.0721,-252.369 0/0:64:64,0:64:2580:0:0:0,-19.2659,-232.325 0/0:41:41,0:41:1639:0:0:0,-12.3422,-147.744 dDocent_Contig_2845 15 . G A 972.128 . AB=0.193416;ABP=201.401;AC=4;AF=0.5;AN=8;AO=47;CIGAR=1X3M1I4M1X1M;DP=243;DPB=249.5;DPRA=0;EPP=105.07;EPPR=317.874;GTI=0;LEN=1;MEANALT=5;MQM=52.1277;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=0.978723;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1792;QR=5635;RO=145;RPL=0;RPP=105.07;RPPR=317.874;RPR=47;RUN=1;SAF=47;SAP=105.07;SAR=0;SRF=145;SRP=317.874;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:93:41,27,16,4:41:1599:27,16,4:1035,593,56:-72.0213,0,-123.34,-35.8797,-82.9884,-162.516,-81.2105,-128.311,-164.174,-211.445 0|1:64:43,9,4,5:43:1664:9,4,5:332,159,66:-13.8289,0,-134.062,-13.7305,-123.745,-149.275,-23.598,-133.557,-147.263,-158.782 0|1:67:45,9,6,2:45:1745:9,6,2:345,233,12:-14.5334,0,-140.698,-9.05519,-124.394,-150.648,-28.0702,-143.378,-152.425,-170.834 0|1:19:16,2,1,0:16:627:2,1,0:80,39,0:-1.77561,0,-50.9607,-3.38943,-48.357,-54.6425,-6.59209,-51.5628,-54.9435,-58.1492 dDocent_Contig_2846 107 . N A 471.691 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=16;CIGAR=1X;DP=16;DPB=16;DPRA=0;EPP=37.7539;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=507;QR=0;RO=0;RPL=0;RPP=37.7539;RPPR=0;RPR=16;RUN=1;SAF=0;SAP=37.7539;SAR=16;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:5:0,5:0:0:5:167:-15.3596,-1.50515,0 1/1:4:0,4:0:0:4:119:-11.0055,-1.20412,0 1/1:7:0,7:0:0:7:221:-20.2016,-2.10721,0 ./.:.:.:.:.:.:.:. dDocent_Contig_2847 8 . T A 72.3272 . AB=0.210526;ABP=16.8392;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=77;DPB=77;DPRA=0.982759;EPP=11.6962;EPPR=161.528;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=152;QR=2789;RO=73;RPL=0;RPP=11.6962;RPPR=161.528;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=73;SRP=161.528;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:23:23,0:23:872:0:0:0,-6.92369,-78.7982 0/0:18:18,0:18:693:0:0:0,-5.41854,-62.7038 0/1:19:15,4:15:574:4:152:-8.32963,0,-46.282 0/0:17:17,0:17:650:0:0:0,-5.11751,-58.8355 dDocent_Contig_2848 18 . G T 142.701 . AB=0.139241;ABP=92.3155;AC=2;AF=0.25;AN=8;AO=17;CIGAR=1X;DP=217;DPB=217;DPRA=0;EPP=39.9253;EPPR=437.305;GTI=0;LEN=1;MEANALT=1;MQM=57.4118;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.941176;PAIREDR=0.915;PAO=0;PQA=0;PQR=0;PRO=0;QA=676;QR=7910;RO=200;RPL=0;RPP=39.9253;RPPR=437.305;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=200;SRP=437.305;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:75:70,5:70:2774:5:202:0,-4.01517,-231.21 0/0:63:62,1:62:2446:1:35:0,-16.8817,-218.21 0/1:54:47,7:47:1835:7:286:-9.85079,0,-149.103 0/1:25:21,4:21:855:4:153:-6.6131,0,-69.7336 dDocent_Contig_2849 12 . G A 2233.59 . AB=0.201923;ABP=243.793;AC=2;AF=0.25;AN=8;AO=63;CIGAR=1X2M1X;DP=312;DPB=312;DPRA=0;EPP=139.813;EPPR=385.189;GTI=0;LEN=1;MEANALT=2.25;MQM=57.9683;MQMR=60;NS=4;NUMALT=2;ODDS=5.55112e-17;PAIRED=0.222222;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2491;QR=6946;RO=176;RPL=0;RPP=139.813;RPPR=385.189;RPR=63;RUN=1;SAF=63;SAP=139.813;SAR=0;SRF=176;SRP=385.189;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:105:78,19,8:78:3058:19,8:754,316:-38.5891,0,-245.731,-36.0685,-225.449,-285.109 0|1:96:47,27,22:47:1864:27,22:1067,871:-70.5689,0,-145.307,-13.0314,-81.7551,-159.852 0|0:68:24,12,31:24:956:12,31:477,1200:-91.3235,-59.274,-134.382,0,-39.4455,-69.3849 0|0:43:27,5,11:27:1068:5,11:193,437:-27.8676,-21.0075,-107.386,0,-72.9159,-84.5974 dDocent_Contig_2850 65 . C T 105.283 . AB=0.181818;ABP=32.0291;AC=2;AF=0.25;AN=8;AO=6;CIGAR=1X;DP=77;DPB=77;DPRA=0.75;EPP=16.0391;EPPR=157.185;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=243;QR=2803;RO=71;RPL=6;RPP=16.0391;RPPR=157.185;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=71;SRP=157.185;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:20:20,0:20:791:0:0:0,-6.0206,-71.5119 0/1:17:13,4:13:513:4:162:-9.84924,0,-41.3978 0/1:16:14,2:14:551:2:81:-2.86925,0,-45.1186 0/0:24:24,0:24:948:0:0:0,-7.22472,-85.6278 dDocent_Contig_2851 14 . T A 1004.82 . AB=0.376238;ABP=16.4476;AC=4;AF=0.5;AN=8;AO=38;CIGAR=1X;DP=101;DPB=101;DPRA=0;EPP=85.5263;EPPR=139.813;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1494;QR=2504;RO=63;RPL=0;RPP=85.5263;RPPR=139.813;RPR=38;RUN=1;SAF=38;SAP=85.5263;SAR=0;SRF=63;SRP=139.813;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:14,8:14:565:8:323:-22.8154,0,-44.5702 0/1:37:20,17:20:787:17:672:-49.6704,0,-60.0051 0/1:16:10,6:10:385:6:236:-16.7932,0,-30.1809 0/1:26:19,7:19:767:7:263:-16.1926,0,-61.519 dDocent_Contig_2852 10 . G A 515.873 . AB=0.232323;ABP=64.6231;AC=3;AF=0.375;AN=8;AO=23;CIGAR=1X;DP=110;DPB=110;DPRA=3;EPP=52.9542;EPPR=191.928;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.782609;PAIREDR=0.965517;PAO=0;PQA=0;PQR=0;PRO=0;QA=931;QR=3477;RO=87;RPL=0;RPP=52.9542;RPPR=191.928;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=87;SRP=191.928;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:11,0:11:445:0:0:0,-3.31133,-40.4046 0/1:22:16,6:16:625:6:246:-15.8975,0,-49.9586 0/1:33:30,3:30:1217:3:123:-1.5308,0,-99.8662 0/1:44:30,14:30:1190:14:562:-37.6774,0,-94.1311 dDocent_Contig_2853 12 . T C 5621.44 . AB=0.628866;ABP=44.9846;AC=4;AF=0.5;AN=8;AO=183;CIGAR=1X;DP=291;DPB=291;DPRA=0;EPP=400.39;EPPR=235.358;GTI=0;LEN=1;MEANALT=1.25;MQM=58.2568;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=0.994536;PAIREDR=0.925234;PAO=0;PQA=0;PQR=0;PRO=0;QA=7362;QR=4272;RO=107;RPL=0;RPP=400.39;RPPR=235.358;RPR=183;RUN=1;SAF=183;SAP=400.39;SAR=0;SRF=107;SRP=235.358;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:69:25,44:25:985:44:1775:-137.69,0,-68.1719 0/1:88:36,52:36:1439:52:2094:-159.716,0,-103.266 0/1:76:18,58:18:731:58:2323:-181.719,0,-43.2363 0/1:58:28,29:28:1117:29:1170:-88.0089,0,-83.249 dDocent_Contig_2854 66 . T C 36.1731 . AB=0.108696;ABP=64.1892;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X;DP=339;DPB=339;DPRA=0.883333;EPP=22.5536;EPPR=719.596;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=360;QR=13053;RO=330;RPL=9;RPP=22.5536;RPPR=719.596;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=330;SRP=719.596;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:151:151,0:151:5955:0:0:0,-45.4555,-535.751 0/0:113:109,4:109:4336:4:158:0,-19.4161,-375.606 0/1:46:41,5:41:1613:5:202:-4.71411,0,-131.56 0/0:29:29,0:29:1149:0:0:0,-8.72987,-103.69 dDocent_Contig_2855 132 . A G 6633.18 . AB=0.748252;ABP=79.5585;AC=5;AF=0.625;AN=8;AO=237;CIGAR=1X;DP=278;DPB=278;DPRA=0;EPP=517.649;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=8059;QR=1444;RO=41;RPL=0;RPP=517.649;RPPR=92.0407;RPR=237;RUN=1;SAF=0;SAP=517.649;SAR=237;SRF=0;SRP=92.0407;SRR=41;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:71:18,53:18:633:53:1816:-142.351,0,-35.9225 1/1:135:5,130:5:179:130:4403:-380.008,-24.1787,0 0/1:51:14,37:14:498:37:1253:-97.7167,0,-29.8031 0/1:21:4,17:4:134:17:587:-46.834,0,-6.06842 dDocent_Contig_2856 8 . C T 7219.2 . AB=0.596577;ABP=36.1452;AC=4;AF=0.5;AN=8;AO=244;CIGAR=1X;DP=409;DPB=409;DPRA=0;EPP=532.85;EPPR=361.303;GTI=0;LEN=1;MEANALT=1;MQM=59.709;MQMR=57.3818;NS=4;NUMALT=1;ODDS=2.77556e-17;PAIRED=0.983607;PAIREDR=0.927273;PAO=0;PQA=0;PQR=0;PRO=0;QA=9441;QR=6368;RO=165;RPL=0;RPP=532.85;RPPR=361.303;RPR=244;RUN=1;SAF=244;SAP=532.85;SAR=0;SRF=165;SRP=361.303;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:169:66,103:66:2543:103:3983:-307.193,0,-170.987 0/1:111:50,61:50:1945:61:2367:-179.822,0,-132.141 0/1:82:32,50:32:1236:50:1930:-149.255,0,-86.8485 0/1:47:17,30:17:644:30:1161:-90.6405,0,-39.4371 dDocent_Contig_2857 9 . T C 4503.35 . AB=0.0319149;ABP=1434.15;AC=0;AF=0;AN=8;AO=24;CIGAR=1M1X1M;DP=752;DPB=752;DPRA=0;EPP=55.1256;EPPR=670.923;GTI=0;LEN=1;MEANALT=7;MQM=60;MQMR=59.8925;NS=4;NUMALT=5;ODDS=0;PAIRED=0.958333;PAIREDR=0.943284;PAO=0;PQA=0;PQR=0;PRO=0;QA=923;QR=12876;RO=335;RPL=0;RPP=55.1256;RPPR=730.454;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=328;SRP=670.923;SRR=7;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:233:118,12,6,4,48,32:118:4544:12,6,4,48,32:461,234,155,1858,1282:-117.102,-119.709,-489.194,-133.388,-473.571,-504.683,-139.889,-480.072,-493.755,-511.786,0,-340.184,-353.866,-360.367,-358.652,-47.0021,-387.189,-400.871,-407.372,-267.482,-410.473 0|0:236:69,12,6,5,50,73:69:2652:12,6,5,50,73:460,232,193,1881,2912:-219.014,-210.653,-423.394,-220.729,-407.95,-435.278,-223.934,-411.156,-421.233,-438.785,-87.2939,-274.515,-284.592,-287.797,-288.596,0,-187.228,-197.304,-200.51,-63.8666,-194.386 0|0:173:95,6,3,10,29,24:95:3641:6,3,10,29,24:233,116,388,1108,956:-62.2099,-88.8597,-385.877,-81.2785,-378.155,-379.213,-58.9241,-355.803,-348.235,-354.753,0,-296.886,-289.317,-266.964,-290.116,-12.0744,-308.963,-301.394,-279.041,-220.123,-303.698 0|0:110:53,4,9,7,10,22:53:2039:4,9,7,10,22:156,341,258,379,885:-56.9981,-68.1465,-234.346,-44.9938,-207.593,-209.696,-51.8571,-214.455,-191.31,-217.161,-41.8778,-204.477,-181.332,-188.194,-206.28,0,-162.611,-139.465,-146.328,-136.349,-160.801 dDocent_Contig_2858 13 . G C 17607.7 . AB=0.290984;ABP=95.6005;AC=8;AF=1;AN=8;AO=71;CIGAR=2X1M1X2M1X1M1X;DP=563;DPB=563;DPRA=0.76489;EPP=157.185;EPPR=42.0968;GTI=0;LEN=1;MEANALT=3;MQM=59.8028;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2813;QR=712;RO=18;RPL=0;RPP=157.185;RPPR=42.0968;RPR=71;RUN=1;SAF=71;SAP=157.185;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:178:10,162,0:10:394:162,0:6425,0:-542.218,-16.3512,0,-545.228,-48.7669,-577.641 1|1:136:8,73,51:8:318:73,51:2892,2026:-376.189,-140.571,-144.778,-211.843,0,-222.673 1|1:141:0,139,0:0:0:139,0:5526,0:-496.824,-41.8432,0,-496.824,-41.8432,-496.824 1|1:108:0,87,20:0:0:87,20:3439,787:-347.736,-64.7426,-38.553,-282.997,0,-276.977 dDocent_Contig_2859 10 . T G 8156.51 . AB=0.718085;ABP=80.6751;AC=5;AF=0.625;AN=8;AO=244;CIGAR=1X;DP=297;DPB=297;DPRA=0;EPP=532.85;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=9725;QR=2141;RO=53;RPL=0;RPP=532.85;RPPR=118.098;RPR=244;RUN=1;SAF=244;SAP=532.85;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:109:0,109:0:0:109:4348:-391.268,-32.8123,0 0/1:55:15,40:15:611:40:1601:-127.766,0,-38.7708 0/1:79:20,59:20:813:59:2344:-187.337,0,-49.7033 0/1:54:18,36:18:717:36:1432:-112.871,0,-48.5979 dDocent_Contig_2860 17 . T C 4646.21 . AB=0.0394737;ABP=703.024;AC=4;AF=0.5;AN=8;AO=15;CIGAR=3X6M1X;DP=658;DPB=658;DPRA=0;EPP=35.5824;EPPR=884.628;GTI=0;LEN=1;MEANALT=4;MQM=57.9333;MQMR=60;NS=4;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=593;QR=15855;RO=406;RPL=0;RPP=35.5824;RPPR=884.628;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=406;SRP=884.628;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:278:204,18,34,18,0:204:7947:18,34,18,0:696,1319,696,0:-46.9456,-51.1914,-698.899,0,-595.962,-642.892,-51.2349,-647.197,-596.006,-698.943,-108.356,-704.318,-653.127,-704.361,-761.482 0|1:114:73,35,0,0,2:73:2884:35,0,0,2:1337,0,0,80:-87.7094,0,-226.795,-109.685,-237.331,-347.016,-109.685,-237.331,-347.016,-347.016,-103.098,-230.746,-340.43,-340.43,-339.828 0|1:154:65,77,2,0,9:65:2549:77,2,0,9:2996,78,0,357:-226.629,0,-186.433,-239.785,-203.2,-448.798,-246.196,-209.612,-449.4,-455.812,-216.827,-180.243,-420.031,-426.443,-423.733 0|1:112:64,40,0,0,4:64:2475:40,0,0,4:1553,0,0,156:-108.326,0,-191.225,-127.592,-203.266,-330.86,-127.592,-203.266,-330.86,-330.86,-114.778,-190.452,-318.046,-318.046,-316.842 dDocent_Contig_2861 209 . N G 142.323 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=154;QR=0;RO=0;RPL=4;RPP=11.6962;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:4:0,4:0:0:4:154:-14.2312,-1.20412,0 ./.:.:.:.:.:.:.:. dDocent_Contig_2862 134 . A G 32.9968 . AB=0.4;ABP=3.87889;AC=2;AF=0.25;AN=8;AO=5;CIGAR=1X1M1X2M1X6M;DP=74;DPB=74;DPRA=0.320513;EPP=13.8677;EPPR=144.156;GTI=0;LEN=1;MEANALT=1.5;MQM=22.6;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=113;QR=2159;RO=65;RPL=0;RPP=13.8677;RPPR=144.156;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=144.156;SRR=65;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:15:13,0,1:13:441:0,1:0,21:0,-3.91339,-39.7503,-2.66871,-38.4412,-38.1402 0|0:39:38,0,0:38:1260:0,0:0,0:0,-11.4391,-113.397,-11.4391,-113.397,-113.397 0|1:10:6,0,4:6:205:0,4:0,92:-4.38992,-6.1961,-22.9187,0,-16.9792,-15.7751 0|1:10:8,2,0:8:253:2,0:61,0:-0.173136,0,-20.0693,-2.58138,-20.6714,-23.0555 dDocent_Contig_2863 9 . T G 2852.63 . AB=0.4375;ABP=11.1533;AC=4;AF=0.5;AN=8;AO=105;CIGAR=1X;DP=240;DPB=240;DPRA=0;EPP=231.015;EPPR=296.159;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.933333;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4014;QR=5145;RO=135;RPL=0;RPP=231.015;RPPR=296.159;RPR=105;RUN=1;SAF=105;SAP=231.015;SAR=0;SRF=135;SRP=296.159;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:64:27,37:27:1018:37:1402:-107.194,0,-72.657 0/1:60:37,23:37:1401:23:890:-62.3573,0,-108.31 0/1:82:48,34:48:1853:34:1301:-92.6933,0,-142.332 0/1:34:23,11:23:873:11:421:-28.0081,0,-68.6519 dDocent_Contig_2866 18 . A G 284.211 . AB=0.130682;ABP=211.521;AC=2;AF=0.25;AN=8;AO=23;CIGAR=1X;DP=325;DPB=325;DPRA=1.18121;EPP=52.9542;EPPR=632.996;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=58.0166;NS=4;NUMALT=1;ODDS=0;PAIRED=0.826087;PAIREDR=0.910596;PAO=0;PQA=0;PQR=0;PRO=0;QA=921;QR=12090;RO=302;RPL=0;RPP=52.9542;RPPR=658.795;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=299;SRP=632.996;SRR=3;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:106:106,0:106:4235:0:0:0,-31.9092,-371.448 0/1:90:77,13:77:3092:13:517:-19.7835,0,-248.202 0/1:86:76,10:76:3042:10:404:-10.8315,0,-242.88 0/0:43:43,0:43:1721:0:0:0,-12.9443,-153.957 dDocent_Contig_2867 22 . C T 7784.82 . AB=0.629108;ABP=33.8493;AC=5;AF=0.625;AN=8;AO=236;CIGAR=1X;DP=316;DPB=316;DPRA=0;EPP=515.478;EPPR=176.728;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=9441;QR=3218;RO=80;RPL=0;RPP=515.478;RPPR=176.728;RPR=236;RUN=1;SAF=236;SAP=515.478;SAR=0;SRF=80;SRP=176.728;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:103:1,102:1:41:102:4062:-361.466,-26.9115,0 0/1:122:23,99:23:912:99:3988:-322.162,0,-45.6582 0/1:60:43,17:43:1738:17:681:-43.5567,0,-138.571 0/1:31:13,18:13:527:18:710:-54.8886,0,-38.4441 dDocent_Contig_2868 11 . T A 7330.6 . AB=0.385524;ABP=80.0703;AC=4;AF=0.5;AN=8;AO=261;CIGAR=1X;DP=677;DPB=677;DPRA=0;EPP=569.765;EPPR=904.171;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.996169;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=10460;QR=16637;RO=415;RPL=0;RPP=569.765;RPPR=904.171;RPR=261;RUN=1;SAF=261;SAP=569.765;SAR=0;SRF=415;SRP=904.171;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:199:134,65:134:5394:65:2603:-174.483,0,-425.377 0/1:177:104,72:104:4184:72:2891:-206.967,0,-323.194 0/1:169:108,61:108:4297:61:2412:-166.354,0,-335.802 0/1:132:69,63:69:2762:63:2554:-190.247,0,-208.953 dDocent_Contig_2869 7 . C T 661.966 . AB=0.184466;ABP=181.155;AC=3;AF=0.375;AN=8;AO=44;CIGAR=1X;DP=284;DPB=284;DPRA=0;EPP=98.5551;EPPR=521.992;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.979079;PAO=0;PQA=0;PQR=0;PRO=0;QA=1670;QR=9126;RO=239;RPL=0;RPP=98.5551;RPPR=521.992;RPR=44;RUN=1;SAF=44;SAP=98.5551;SAR=0;SRF=239;SRP=521.992;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:78:72,6:72:2739:6:228:0,-2.59688,-225.813 0/1:96:74,22:74:2840:22:839:-46.9336,0,-226.879 0/1:79:71,7:71:2703:7:265:-0.54316,0,-219.817 0/1:31:22,9:22:844:9:338:-21.4419,0,-66.95 dDocent_Contig_2872 11 . T A 255.585 . AB=0.111969;ABP=341.735;AC=1;AF=0.125;AN=8;AO=44;CIGAR=1X;DP=823;DPB=823;DPRA=0;EPP=98.5551;EPPR=1690.24;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=52.2613;NS=4;NUMALT=1;ODDS=2.77556e-17;PAIRED=1;PAIREDR=0.893179;PAO=0;PQA=0;PQR=0;PRO=0;QA=1760;QR=31001;RO=777;RPL=0;RPP=98.5551;RPPR=1690.24;RPR=44;RUN=1;SAF=44;SAP=98.5551;SAR=0;SRF=777;SRP=1690.24;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:290:285,5:285:11359:5:198:0,-69.1037,-880.865 0/1:259:228,29:228:9139:29:1157:-26.6554,0,-698.721 0/0:190:181,9:181:7207:9:365:0,-23.9808,-519.087 0/0:84:83,1:83:3296:1:40:0,-21.2908,-255.747 dDocent_Contig_2874 13 . T C 378.469 . AB=0.0882029;ABP=1338.95;AC=2;AF=0.25;AN=8;AO=114;CIGAR=1X3M;DP=1564;DPB=1564;DPRA=0;EPP=250.558;EPPR=2869.35;GTI=0;LEN=1;MEANALT=4.75;MQM=59.5263;MQMR=59.9545;NS=4;NUMALT=2;ODDS=0;PAIRED=0.833333;PAIREDR=0.861364;PAO=0;PQA=0;PQR=0;PRO=0;QA=4595;QR=52420;RO=1320;RPL=0;RPP=250.558;RPPR=2869.35;RPR=114;RUN=1;SAF=114;SAP=250.558;SAR=0;SRF=1320;SRP=2869.35;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:451:375,22,39:375:14862:22,39:874,1583:-17.6151,-59.2129,-1275.83,0,-1151.96,-1211.51 0|1:456:382,26,41:382:15208:26,41:1011,1671:-22.4256,-54.8991,-1299.16,0,-1169.58,-1239.76 0|0:464:384,32,28:384:15252:32,28:1263,1104:0,-11.6829,-1257.63,-24.7721,-1176.44,-1271.92 0|0:193:179,7,6:179:7098:7,6:283,237:0,-30.5485,-612.69,-34.3874,-595.296,-616.823 dDocent_Contig_2875 123 . G A 182.605 . AB=0.142012;ABP=191.132;AC=1;AF=0.125;AN=8;AO=74;CIGAR=1X;DP=1042;DPB=1042;DPRA=0;EPP=163.699;EPPR=2105;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2437;QR=32801;RO=968;RPL=0;RPP=163.699;RPPR=2105;RPR=74;RUN=1;SAF=0;SAP=163.699;SAR=74;SRF=0;SRP=2105;SRR=968;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:346:320,26:320:10819:26:841:0,-28.1687,-897.716 0/0:277:268,9:268:9171:9:313:0,-54.8783,-796.93 0/0:250:235,15:235:7920:15:506:0,-29.3952,-667.029 0/1:169:145,24:145:4891:24:777:-19.3574,0,-389.498 dDocent_Contig_2876 109 . T C 152.731 . AB=0.203704;ABP=44.1879;AC=1;AF=0.125;AN=8;AO=26;CIGAR=1X;DP=330;DPB=330;DPRA=0;EPP=59.4686;EPPR=663.138;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=877;QR=10263;RO=304;RPL=0;RPP=59.4686;RPPR=663.138;RPR=26;RUN=1;SAF=0;SAP=59.4686;SAR=26;SRF=0;SRP=663.138;SRR=304;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:103:98,5:98:3329:5:170:0,-15.3714,-284.207 0/0:95:88,7:88:2990:7:243:0,-6.38896,-247.134 0/0:78:75,3:75:2518:3:105:0,-13.6842,-217.084 0/1:54:43,11:43:1426:11:359:-16.37,0,-112.374 dDocent_Contig_2877 30 . G A 233.892 . AB=0.149533;ABP=117.165;AC=3;AF=0.375;AN=8;AO=16;CIGAR=1X;DP=118;DPB=118;DPRA=3.24242;EPP=37.7539;EPPR=224.5;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=645;QR=4044;RO=102;RPL=0;RPP=37.7539;RPPR=224.5;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=102;SRP=224.5;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:32:27,5:27:1087:5:203:-9.01989,0,-88.4862 0/1:37:33,4:33:1320:4:163:-3.92032,0,-107.928 0/1:38:31,7:31:1225:7:279:-14.0404,0,-99.0867 0/0:11:11,0:11:412:0:0:0,-3.31133,-37.4179 dDocent_Contig_2878 8 . T G 197.448 . AB=0.171053;ABP=74.4403;AC=3;AF=0.375;AN=8;AO=14;CIGAR=1X3M1X;DP=106;DPB=106;DPRA=0;EPP=33.4109;EPPR=202.786;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.869565;PAO=0;PQA=0;PQR=0;PRO=0;QA=538;QR=3553;RO=92;RPL=0;RPP=33.4109;RPPR=202.786;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=92;SRP=202.786;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:30:29,1:29:1112:1:37:0,-5.33307,-96.68 0|1:27:24,3:24:919:3:115:-2.59708,0,-74.8919 0|1:29:23,6:23:896:6:231:-12.4279,0,-72.2225 0|1:20:16,4:16:626:4:155:-8.30484,0,-50.6563 dDocent_Contig_2879 107 . N A 45.7423 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=59.3333;MQMR=0;NS=1;NUMALT=1;ODDS=5.29832;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=49;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:49:-4.57205,-0.90309,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_2880 92 . C T 2688.03 . AB=0.65873;ABP=30.5846;AC=5;AF=0.625;AN=8;AO=100;CIGAR=1X;DP=143;DPB=143;DPRA=0;EPP=220.158;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3434;QR=1496;RO=43;RPL=100;RPP=220.158;RPPR=96.3836;RPR=0;RUN=1;SAF=100;SAP=220.158;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:55:26,29:26:906:29:1004:-74.1162,0,-65.3004 0/1:35:4,31:4:140:31:1068:-85.8928,0,-2.40888 0/1:36:13,23:13:450:23:801:-61.5736,0,-29.9942 1/1:17:0,17:0:0:17:561:-50.8013,-5.11751,0 dDocent_Contig_2881 42 . G T 4517.66 . AB=0.0933333;ABP=326.212;AC=1;AF=0.125;AN=8;AO=21;CIGAR=1X1M1X3M1X;DP=225;DPB=225;DPRA=0;EPP=48.6112;EPPR=94.2121;GTI=0;LEN=1;MEANALT=3.5;MQM=60;MQMR=60;NS=4;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=818;QR=1654;RO=42;RPL=0;RPP=48.6112;RPPR=94.2121;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:77:15,5,3,5,49:15:591:5,3,5,49:196,119,203,1909:-151.536,-139.933,-187.05,-146.255,-178.759,-193.975,-139.308,-171.812,-178.135,-186.426,0,-32.5016,-38.8232,-31.8748,-33.8689 0|0:60:13,2,0,0,44:13:513:2,0,0,44:80,0,0,1724:-137.295,-134.618,-176.227,-141.208,-176.829,-183.419,-141.208,-176.829,-183.419,-183.419,0,-35.6255,-42.2166,-42.2166,-28.9713 1|0:55:4,10,6,1,34:4:155:10,6,1,34:390,232,40,1350:-128.717,-97.8638,-107.587,-110.868,-91.5444,-121.795,-126.626,-107.302,-120.306,-139.058,-19.3255,0,-13.0062,-28.7632,-21.8238 0|0:33:10,4,6,0,13:10:395:4,6,0,13:152,228,0,513:-39.2074,-29.7537,-61.0558,-23.5238,-43.5662,-54.2235,-42.2177,-62.2599,-56.0297,-74.7242,0,-20.0481,-13.8183,-32.5119,-28.5985 dDocent_Contig_2882 107 . N C 951.325 . AB=0.75;ABP=7.35324;AC=8;AF=1;AN=8;AO=40;CIGAR=1X4M;DP=42;DPB=42;DPRA=0;EPP=89.8692;EPPR=0;GTI=0;LEN=1;MEANALT=1.25;MQM=37.725;MQMR=0;NS=4;NUMALT=2;ODDS=4.33681e-19;PAIRED=0.075;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1110;QR=0;RO=0;RPL=0;RPP=89.8692;RPPR=0;RPR=40;RUN=1;SAF=0;SAP=89.8692;SAR=40;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:2:0,0,2:0:0:0,2:0,63:-5.98277,-5.98277,-5.98277,-0.60206,-0.60206,0 1|1:28:0,0,28:0:0:0,28:0,749:-62.7513,-62.7513,-62.7513,-8.42884,-8.42884,0 1|1:8:0,2,6:0:0:2,6:69,167:-15.5698,-13.1511,-12.5491,-2.61359,0,-0.807411 1|1:4:0,0,4:0:0:0,4:0,131:-11.0044,-11.0044,-11.0044,-1.20412,-1.20412,0 dDocent_Contig_2883 27 . A G 137.58 . AB=0.212121;ABP=26.7649;AC=2;AF=0.25;AN=8;AO=10;CIGAR=1X;DP=113;DPB=113;DPRA=0.657895;EPP=24.725;EPPR=226.672;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=0.990291;PAO=0;PQA=0;PQR=0;PRO=0;QA=397;QR=4134;RO=103;RPL=0;RPP=24.725;RPPR=226.672;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=103;SRP=226.672;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:38:38,0:38:1519:0:0:0,-11.4391,-136.952 0/1:21:16,5:16:637:5:197:-11.7843,0,-51.3399 0/0:42:39,3:39:1579:3:118:0,-1.64054,-131.336 0/1:12:10,2:10:399:2:82:-4.16732,0,-32.6559 dDocent_Contig_2884 149 . G T 164.254 . AB=0.352941;ABP=6.20364;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=83;DPB=83;DPRA=0.772727;EPP=16.0391;EPPR=170.214;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=244;QR=3058;RO=77;RPL=0;RPP=16.0391;RPPR=170.214;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=170.214;SRR=77;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:11,6:11:444:6:244:-17.2213,0,-35.1978 0/0:17:17,0:17:675:0:0:0,-5.11751,-61.0782 0/0:29:29,0:29:1148:0:0:0,-8.72987,-103.597 0/0:20:20,0:20:791:0:0:0,-6.0206,-71.4983 dDocent_Contig_2886 198 . A T 134.578 . AB=0.163934;ABP=62.8504;AC=2;AF=0.25;AN=8;AO=10;CIGAR=1X;DP=128;DPB=128;DPRA=0.910448;EPP=24.725;EPPR=259.244;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=370;QR=4434;RO=118;RPL=10;RPP=24.725;RPPR=259.244;RPR=0;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=259.244;SRR=118;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:54:54,0:54:2055:0:0:0,-16.2556,-185.187 0/1:46:41,5:41:1514:5:193:-3.89411,0,-122.679 0/0:13:13,0:13:487:0:0:0,-3.91339,-44.1707 0/1:15:10,5:10:378:5:177:-11.7571,0,-29.8563 dDocent_Contig_2887 14 . A G 3218.13 . AB=0.752941;ABP=50.2462;AC=6;AF=0.75;AN=8;AO=93;CIGAR=1X4M;DP=116;DPB=116;DPRA=0;EPP=204.957;EPPR=33.4109;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3731;QR=558;RO=14;RPL=0;RPP=204.957;RPPR=33.4109;RPR=93;RUN=1;SAF=93;SAP=204.957;SAR=0;SRF=14;SRP=33.4109;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:29:0,4,23:0:0:4,23:159,932:-89.9484,-76.8586,-75.6545,-13.0891,0,-6.16541 1|1:31:0,1,29:0:0:1,29:40,1172:-105.355,-102.06,-101.759,-8.72987,-5.43479,0 0|1:31:7,0,24:7:278:0,24:0,943:-75.8368,-77.944,-100.831,0,-23.2826,-16.0579 0|1:25:7,1,17:7:280:1,17:40,684:-54.2644,-53.0767,-75.8403,0,-19.7703,-17.9479 dDocent_Contig_2888 34 . G A 293.445 . AB=0.354839;ABP=8.68415;AC=1;AF=0.125;AN=8;AO=11;CIGAR=1X;DP=120;DPB=120;DPRA=1.04494;EPP=26.8965;EPPR=239.701;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=438;QR=4211;RO=109;RPL=0;RPP=26.8965;RPPR=239.701;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=109;SRP=239.701;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:46:46,0:46:1766:0:0:0,-13.8474,-159.175 0/1:31:20,11:20:788:11:438:-30.4414,0,-61.9111 0/0:20:20,0:20:782:0:0:0,-6.0206,-70.7016 0/0:23:23,0:23:875:0:0:0,-6.92369,-79.0558 dDocent_Contig_2889 44 . T C 89.328 . AB=0.192308;ABP=24.391;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=82;DPB=82;DPRA=1.39286;EPP=13.8677;EPPR=170.214;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=191;QR=3085;RO=77;RPL=0;RPP=13.8677;RPPR=170.214;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=77;SRP=170.214;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:21,5:21:836:5:191:-9.72861,0,-67.723 0/0:23:23,0:23:921:0:0:0,-6.92369,-83.1873 0/0:27:27,0:27:1084:0:0:0,-8.12781,-97.8488 0/0:6:6,0:6:244:0:0:0,-1.80618,-22.3386 dDocent_Contig_2890 14 . G T 74.3033 . AB=0.173913;ABP=24.253;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=102;DPB=102;DPRA=0.873418;EPP=11.6962;EPPR=215.815;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.836735;PAO=0;PQA=0;PQR=0;PRO=0;QA=164;QR=3833;RO=98;RPL=0;RPP=11.6962;RPPR=215.815;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=98;SRP=215.815;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:19,4:19:735:4:164:-8.22621,0,-59.5444 0/0:29:29,0:29:1160:0:0:0,-8.72987,-104.683 0/0:31:31,0:31:1192:0:0:0,-9.33193,-107.561 0/0:19:19,0:19:746:0:0:0,-5.71957,-67.4636 dDocent_Contig_2891 1 . N G 75.0195 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=4.60517;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=79;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:79:-7.49763,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_2894 10 . C T 328.746 . AB=0.207792;ABP=60.1172;AC=3;AF=0.375;AN=8;AO=16;CIGAR=1X;DP=136;DPB=136;DPRA=0.435028;EPP=37.7539;EPPR=263.587;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.983333;PAO=0;PQA=0;PQR=0;PRO=0;QA=650;QR=4860;RO=120;RPL=0;RPP=37.7539;RPPR=263.587;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=120;SRP=263.587;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:16,3:16:647:3:123:-5.74522,0,-52.8443 0/0:59:59,0:59:2385:0:0:0,-17.7608,-214.796 0/1:40:35,5:35:1420:5:202:-6.52067,0,-116.006 0/1:18:10,8:10:408:8:325:-24.2005,0,-31.662 dDocent_Contig_2895 56 . T C 3505.59 . AB=0.732143;ABP=55.4358;AC=6;AF=0.75;AN=8;AO=103;CIGAR=1X3M;DP=133;DPB=133;DPRA=0;EPP=226.672;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1.75;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4010;QR=607;RO=16;RPL=103;RPP=226.672;RPPR=37.7539;RPR=0;RUN=1;SAF=103;SAP=226.672;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:34:11,5,18:11:423:5,18:198,706:-54.7435,-41.757,-74.9759,0,-18.4185,-29.3006 0|1:47:5,2,40:5:184:2,40:81,1579:-128.409,-123.234,-137.674,0,-8.32859,-2.97705 1|1:31:0,7,24:0:0:7,24:272,914:-97.6898,-75.3385,-73.2313,-22.7378,0,-15.513 1|1:21:0,0,21:0:0:0,21:0,811:-73.3055,-73.3055,-73.3055,-6.32163,-6.32163,0 dDocent_Contig_2896 47 . A C 319.812 . AB=0.157143;ABP=145.955;AC=3;AF=0.375;AN=8;AO=22;CIGAR=1X;DP=164;DPB=164;DPRA=1.94444;EPP=50.7827;EPPR=311.359;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.908451;PAO=0;PQA=0;PQR=0;PRO=0;QA=850;QR=5643;RO=142;RPL=0;RPP=50.7827;RPPR=311.359;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=142;SRP=311.359;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:15,11:15:590:11:431:-31.3132,0,-45.6115 0/0:24:24,0:24:969:0:0:0,-7.22472,-87.5062 0/1:70:63,7:63:2483:7:261:-2.76962,0,-202.545 0/1:44:40,4:40:1601:4:158:-1.35404,0,-131.08 dDocent_Contig_2897 69 . G A 9207.62 . AB=0.875;ABP=90.9549;AC=7;AF=0.875;AN=8;AO=308;CIGAR=1X;DP=327;DPB=327;DPRA=0;EPP=671.824;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=10766;QR=606;RO=18;RPL=308;RPP=671.824;RPPR=42.0968;RPR=0;RUN=1;SAF=308;SAP=671.824;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:68:0,68:0:0:68:2352:-211.937,-20.47,0 0/1:72:9,63:9:313:63:2204:-176.952,0,-6.83284 1/1:91:9,81:9:293:81:2853:-230.318,-0.762696,0 1/1:96:0,96:0:0:96:3357:-302.349,-28.8989,0 dDocent_Contig_2898 10 . T C 2195.87 . AB=0.6875;ABP=17.6677;AC=5;AF=0.625;AN=8;AO=65;CIGAR=1X;DP=80;DPB=80;DPRA=0;EPP=144.156;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2612;QR=607;RO=15;RPL=0;RPP=144.156;RPPR=35.5824;RPR=65;RUN=1;SAF=65;SAP=144.156;SAR=0;SRF=15;SRP=35.5824;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:32:0,32:0:0:32:1279:-115.373,-9.63296,0 0/1:13:1,12:1:41:12:488:-40.3577,0,-0.181177 0/1:16:7,9:7:279:9:355:-27.4928,0,-20.6615 0/1:19:7,12:7:287:12:490:-38.7314,0,-20.4857 dDocent_Contig_2899 8 . G T 3089.42 . AB=0.689076;ABP=39.9618;AC=5;AF=0.625;AN=8;AO=101;CIGAR=1X;DP=139;DPB=139;DPRA=0;EPP=222.329;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3900;QR=1464;RO=38;RPL=0;RPP=222.329;RPPR=85.5263;RPR=101;RUN=1;SAF=101;SAP=222.329;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:42:9,33:9:349:33:1270:-101.948,0,-19.1275 0/1:55:23,32:23:884:32:1232:-94.6167,0,-63.3231 0/1:22:5,17:5:192:17:660:-53.1146,0,-11.0273 1/1:20:1,19:1:39:19:738:-62.8545,-2.12404,0 dDocent_Contig_2900 21 . T A 44.8687 . AB=0.0983607;ABP=173.951;AC=2;AF=0.25;AN=8;AO=13;CIGAR=1X;DP=234;DPB=234;DPRA=0.496454;EPP=31.2394;EPPR=482.906;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=512;QR=8868;RO=221;RPL=0;RPP=31.2394;RPPR=482.906;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=221;SRP=482.906;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:67:60,7:60:2420:7:278:-5.22135,0,-197.776 0/0:94:94,0:94:3763:0:0:0,-28.2968,-338.68 0/1:55:50,5:50:2002:5:193:-1.17998,0,-163.815 0/0:18:17,1:17:683:1:41:0,-1.32397,-57.7059 dDocent_Contig_2901 28 . T A 3165.86 . AB=0.59322;ABP=16.3704;AC=4;AF=0.5;AN=8;AO=105;CIGAR=1X;DP=177;DPB=177;DPRA=0;EPP=231.015;EPPR=159.356;GTI=0;LEN=1;MEANALT=1;MQM=59.981;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4152;QR=2838;RO=72;RPL=0;RPP=231.015;RPPR=159.356;RPR=105;RUN=1;SAF=105;SAP=231.015;SAR=0;SRF=72;SRP=159.356;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:51:27,24:27:1071:24:944:-69.9126,0,-81.3306 0/1:43:16,27:16:612:27:1074:-84.0011,0,-42.4619 0/1:50:20,30:20:791:30:1192:-92.5086,0,-56.459 0/1:33:9,24:9:364:24:942:-75.1531,0,-23.1904 dDocent_Contig_2902 15 . G C 4894.28 . AB=0.839744;ABP=159.412;AC=5;AF=0.625;AN=8;AO=152;CIGAR=1X;DP=177;DPB=177;DPRA=0;EPP=333.074;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.993421;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5989;QR=958;RO=25;RPL=0;RPP=333.074;RPPR=57.2971;RPR=152;RUN=1;SAF=152;SAP=333.074;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:76:11,65:11:399:65:2592:-210.541,0,-13.3589 0/1:48:10,38:10:400:38:1518:-122.411,0,-21.9099 0/1:32:4,28:4:159:28:1051:-85.2324,0,-5.05848 1/1:21:0,21:0:0:21:828:-74.8356,-6.32163,0 dDocent_Contig_2903 34 . T A 7853.09 . AB=0.745098;ABP=56.2327;AC=7;AF=0.875;AN=8;AO=247;CIGAR=1X;DP=288;DPB=288;DPRA=0;EPP=539.364;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=9584;QR=1460;RO=40;RPL=0;RPP=539.364;RPPR=89.8692;RPR=247;RUN=1;SAF=247;SAP=539.364;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:102:26,76:26:956:76:2973:-236.975,0,-55.6429 1/1:76:6,70:6:215:70:2740:-227.032,-3.17985,0 1/1:78:7,70:7:254:70:2693:-219.304,-0.374787,0 1/1:32:1,31:1:35:31:1178:-102.792,-6.13433,0 dDocent_Contig_2904 34 . A T 407.706 . AB=0.213483;ABP=66.471;AC=2;AF=0.25;AN=8;AO=19;CIGAR=2X;DP=197;DPB=197;DPRA=0.824074;EPP=44.2683;EPPR=389.532;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=767;QR=7028;RO=178;RPL=0;RPP=44.2683;RPPR=389.532;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=178;SRP=389.532;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:61:45,16:45:1795:16:647:-40.2013,0,-143.409 0|0:76:76,0:76:2988:0:0:0,-22.8783,-269.027 0|0:32:32,0:32:1270:0:0:0,-9.63296,-114.575 0|1:28:25,3:25:975:3:120:-2.75847,0,-79.6222 dDocent_Contig_2905 10 . T C 303.724 . AB=0.190476;ABP=72.911;AC=1;AF=0.125;AN=8;AO=17;CIGAR=1X;DP=191;DPB=191;DPRA=1.80882;EPP=39.9253;EPPR=380.846;GTI=0;LEN=1;MEANALT=1;MQM=59.0588;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=666;QR=6957;RO=174;RPL=0;RPP=39.9253;RPPR=380.846;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=174;SRP=380.846;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:39:38,1:38:1511:1:39:0,-7.84875,-132.345 0/1:84:68,16:68:2741:16:627:-31.4693,0,-221.514 0/0:46:46,0:46:1821:0:0:0,-13.8474,-164.106 0/0:22:22,0:22:884:0:0:0,-6.62266,-79.8679 dDocent_Contig_2906 11 . T A 7003.53 . AB=0.708108;ABP=72.6031;AC=6;AF=0.75;AN=8;AO=210;CIGAR=1X;DP=264;DPB=264;DPRA=0;EPP=459.02;EPPR=120.27;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=8417;QR=2168;RO=54;RPL=0;RPP=459.02;RPPR=120.27;RPR=210;RUN=1;SAF=210;SAP=459.02;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:100:20,80:20:791:80:3214:-259.214,0,-41.4016 0/1:85:34,51:34:1377:51:2053:-159.363,0,-98.5937 1/1:41:0,41:0:0:41:1618:-145.853,-12.3422,0 1/1:38:0,38:0:0:38:1532:-138.118,-11.4391,0 dDocent_Contig_2907 34 . G A 55.1495 . AB=0.125;ABP=51.8684;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=184;DPB=184;DPRA=0.833333;EPP=13.8677;EPPR=391.704;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.994413;PAO=0;PQA=0;PQR=0;PRO=0;QA=203;QR=7107;RO=179;RPL=0;RPP=13.8677;RPPR=391.704;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=179;SRP=391.704;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:42:42,0:42:1634:0:0:0,-12.6433,-147.291 0/1:40:35,5:35:1408:5:203:-6.61186,0,-114.931 0/0:60:60,0:60:2381:0:0:0,-18.0618,-214.448 0/0:42:42,0:42:1684:0:0:0,-12.6433,-151.779 dDocent_Contig_2908 46 . A G 67.9999 . AB=0.151515;ABP=37.8197;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X;DP=210;DPB=210;DPRA=1.06667;EPP=14.8328;EPPR=439.476;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=0.777778;PAIREDR=0.955224;PAO=0;PQA=0;PQR=0;PRO=0;QA=340;QR=7890;RO=201;RPL=2;RPP=9.04217;RPPR=439.476;RPR=7;RUN=1;SAF=8;SAP=14.8328;SAR=1;SRF=201;SRP=439.476;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:83:81,2:81:3177:2:75:0,-17.8667,-278.904 0/0:50:50,0:50:1965:0:0:0,-15.0515,-177.048 0/0:44:42,2:42:1641:2:71:0,-6.50494,-141.188 0/1:33:28,5:28:1107:5:194:-7.8969,0,-89.9831 dDocent_Contig_2909 73 . G A 5922.28 . AB=0.442935;ABP=13.4192;AC=5;AF=0.625;AN=8;AO=214;CIGAR=1X3M;DP=423;DPB=423;DPRA=0;EPP=467.705;EPPR=409.076;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7823;QR=6889;RO=187;RPL=214;RPP=467.705;RPPR=409.076;RPR=0;RUN=1;SAF=214;SAP=467.705;SAR=0;SRF=187;SRP=409.076;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:166:88,19,59:88:3252:19,59:708,2161:-150.103,-118.634,-378.907,0,-208.029,-248.227 1|1:55:1,3,51:1:38:3,51:116,1878:-165.463,-156.235,-158.448,-12.2377,-5.8193,0 0|1:116:61,0,55:61:2236:0,55:0,2047:-149.551,-167.914,-350.656,0,-183.111,-166.555 0|1:86:37,0,49:37:1363:0,49:0,1737:-130.704,-141.842,-253.299,0,-111.819,-97.0686 dDocent_Contig_2910 79 . A G 279.609 . AB=0.351351;ABP=10.1116;AC=1;AF=0.125;AN=8;AO=14;CIGAR=1X;DP=73;DPB=73;DPRA=2.65;EPP=33.4109;EPPR=131.127;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=476;QR=2027;RO=59;RPL=14;RPP=33.4109;RPPR=131.127;RPR=0;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=59;SRP=131.127;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:16:15,1:15:513:1:33:0,-1.51734,-43.1956 0/1:37:24,13:24:827:13:443:-29.0577,0,-63.6095 0/0:8:8,0:8:272:0:0:0,-2.40824,-24.8114 0/0:12:12,0:12:415:0:0:0,-3.61236,-37.6817 dDocent_Contig_2911 151 . G A 123.199 . AB=0.178082;ABP=68.7196;AC=1;AF=0.125;AN=8;AO=14;CIGAR=1X;DP=202;DPB=202;DPRA=1.26966;EPP=33.4109;EPPR=411.247;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=422;QR=6041;RO=188;RPL=0;RPP=33.4109;RPPR=411.247;RPR=14;RUN=1;SAF=0;SAP=33.4109;SAR=14;SRF=0;SRP=411.247;SRR=188;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:64:64,0:64:2112:0:0:0,-19.2659,-190.353 0/1:73:60,13:60:1919:13:390:-13.4168,0,-151.006 0/0:40:39,1:39:1217:1:32:0,-8.84189,-106.614 0/0:25:25,0:25:793:0:0:0,-7.52575,-71.6675 dDocent_Contig_2912 109 . T G 34.8111 . AB=0.142857;ABP=41.7866;AC=2;AF=0.25;AN=8;AO=7;CIGAR=1X;DP=89;DPB=89;DPRA=0.655556;EPP=18.2106;EPPR=181.071;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.97561;PAO=0;PQA=0;PQR=0;PRO=0;QA=240;QR=2859;RO=82;RPL=0;RPP=18.2106;RPPR=181.071;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=181.071;SRR=82;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:24:22,2:22:778:2:68:0,-0.766844,-63.8859 0/1:19:16,3:16:555:3:103:-3.89045,0,-44.558 0/0:30:30,0:30:1046:0:0:0,-9.0309,-94.4515 0/1:16:14,2:14:480:2:69:-1.73618,0,-38.7094 dDocent_Contig_2913 94 . T C 4984.53 . AB=0.755814;ABP=51.8937;AC=6;AF=0.75;AN=8;AO=183;CIGAR=1X;DP=209;DPB=209;DPRA=0;EPP=400.39;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6002;QR=861;RO=26;RPL=183;RPP=400.39;RPPR=59.4686;RPR=0;RUN=1;SAF=183;SAP=400.39;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:65:0,65:0:0:65:2107:-189.901,-19.567,0 1/1:58:5,53:5:161:53:1731:-141.266,-2.6524,0 0/1:57:9,48:9:298:48:1598:-126.952,0,-9.98478 0/1:29:12,17:12:402:17:566:-42.5284,0,-27.7737 dDocent_Contig_2914 10 . T C 10608.1 . AB=0.610413;ABP=61.9909;AC=4;AF=0.5;AN=8;AO=340;CIGAR=1X;DP=557;DPB=557;DPRA=0;EPP=741.311;EPPR=474.22;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=13704;QR=8731;RO=217;RPL=0;RPP=741.311;RPPR=474.22;RPR=340;RUN=1;SAF=340;SAP=741.311;SAR=0;SRF=217;SRP=474.22;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:235:104,131:104:4194:131:5290:-405.177,0,-306.661 0/1:156:69,87:69:2774:87:3506:-268.601,0,-202.804 0/1:104:28,76:28:1120:76:3053:-243.538,0,-69.7752 0/1:62:16,46:16:643:46:1855:-148.487,0,-39.539 dDocent_Contig_2915 9 . G T 37715.6 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=1134;CIGAR=1X;DP=1173;DPB=1173;DPRA=0;EPP=2465.46;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1.75;MQM=59.8466;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=43348;QR=1376;RO=36;RPL=0;RPP=2465.46;RPPR=81.1833;RPR=1134;RUN=1;SAF=1134;SAP=2465.46;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:448:6,441:6:234:441:16906:-1496.88,-113.51,0 1/1:303:5,297:5:186:297:11338:-1002.22,-74.114,0 1/1:265:14,251:14:539:251:9579:-812.508,-30.9175,0 1/1:157:11,145:11:417:145:5525:-459.351,-9.4692,0 dDocent_Contig_2916 30 . T A 56.4842 . AB=0.142857;ABP=41.7866;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=273;DPB=273;DPRA=0.358209;EPP=20.3821;EPPR=578.45;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=291;QR=10533;RO=265;RPL=0;RPP=20.3821;RPPR=578.45;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=265;SRP=578.45;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:104:104,0:104:4149:0:0:0,-31.3071,-373.374 0/0:97:97,0:97:3839:0:0:0,-29.1999,-345.508 0/0:37:34,3:34:1345:3:103:0,-1.532,-111.706 0/1:35:30,5:30:1200:5:188:-6.7452,0,-97.7386 dDocent_Contig_2917 176 . G A 320.962 . AB=0.363636;ABP=8.34028;AC=1;AF=0.125;AN=8;AO=12;CIGAR=1X;DP=104;DPB=104;DPRA=1.39437;EPP=29.068;EPPR=202.786;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=472;QR=3618;RO=92;RPL=12;RPP=29.068;RPPR=202.786;RPR=0;RUN=1;SAF=0;SAP=29.068;SAR=12;SRF=0;SRP=202.786;SRR=92;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:33:21,12:21:814:12:472:-32.892,0,-63.6318 0/0:33:33,0:33:1305:0:0:0,-9.93399,-117.709 0/0:10:10,0:10:410:0:0:0,-3.0103,-37.2606 0/0:28:28,0:28:1089:0:0:0,-8.42884,-98.2949 dDocent_Contig_2918 125 . T G 2040.32 . AB=0.576389;ABP=10.3089;AC=4;AF=0.5;AN=8;AO=83;CIGAR=1X4M;DP=144;DPB=144;DPRA=0;EPP=183.243;EPPR=128.956;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2786;QR=1988;RO=58;RPL=0;RPP=183.243;RPPR=128.956;RPR=83;RUN=1;SAF=0;SAP=183.243;SAR=83;SRF=0;SRP=128.956;SRR=58;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:59:33,0,26:33:1137:0,26:0,894:-63.0139,-72.9478,-165.304,0,-92.7006,-84.8738 0|1:39:15,0,23:15:511:0,23:0,737:-54.9825,-59.498,-100.965,0,-41.5891,-34.6654 0|1:34:8,2,24:8:270:2,24:67,806:-62.888,-59.9727,-81.2538,0,-16.5668,-14.6646 0|1:12:2,0,10:2:70:0,10:0,349:-28.1344,-28.7365,-34.4321,0,-6.04534,-3.03504 dDocent_Contig_2919 111 . T C 13127.9 . AB=0.865854;ABP=193.676;AC=7;AF=0.875;AN=8;AO=469;CIGAR=1X;DP=502;DPB=502;DPRA=0;EPP=1021.43;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=15469;QR=1060;RO=33;RPL=0;RPP=1021.43;RPPR=74.6689;RPR=469;RUN=1;SAF=0;SAP=1021.43;SAR=469;SRF=0;SRP=74.6689;SRR=33;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:207:5,202:5:155:202:6689:-587.887,-48.0574,0 0/1:164:22,142:22:732:142:4680:-372.021,0,-16.8218 1/1:71:6,65:6:173:65:2108:-174.127,-5.5193,0 1/1:60:0,60:0:0:60:1992:-179.552,-18.0618,0 dDocent_Contig_2920 66 . C A 93.2359 . AB=0.100503;ABP=278.875;AC=1;AF=0.125;AN=8;AO=28;CIGAR=1X;DP=719;DPB=719;DPRA=0.690883;EPP=63.8115;EPPR=1449.66;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.984058;PAO=0;PQA=0;PQR=0;PRO=0;QA=1098;QR=27015;RO=690;RPL=28;RPP=63.8115;RPPR=1501.33;RPR=0;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=684;SRP=1449.66;SRR=6;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:234:234,0:234:9220:0:0:0,-70.441,-829.291 0/0:130:127,3:127:4972:3:122:0,-27.7614,-436.016 0/1:199:178,20:178:6959:20:779:-10.4205,0,-566.04 0/0:156:151,5:151:5864:5:197:0,-28.8552,-509.48 dDocent_Contig_2921 7 . C T 15173.1 . AB=0.0362416;ABP=1394.74;AC=0;AF=0;AN=8;AO=27;CIGAR=1X5M;DP=745;DPB=745;DPRA=0;EPP=61.6401;EPPR=275.43;GTI=0;LEN=1;MEANALT=6;MQM=60;MQMR=59.4894;NS=4;NUMALT=3;ODDS=0;PAIRED=0.62963;PAIREDR=0.503546;PAO=0;PQA=0;PQR=0;PRO=0;QA=1029;QR=5454;RO=141;RPL=0;RPP=61.6401;RPPR=309.188;RPR=27;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=137;SRP=275.43;SRR=4;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:271:57,16,3,185:57:2210:16,3,185:632,117,7296:-563.86,-544.715,-721.462,-571.4,-716.661,-752.062,0,-145.315,-171.989,-125.917 0|0:153:17,15,2,115:17:661:15,2,115:588,78,4611:-352.654,-318.334,-368.138,-351.36,-366.241,-405.078,0,-14.9198,-47.9283,-19.7233 0|0:198:31,11,16,132:31:1193:11,16,132:426,614,5258:-401.696,-395.375,-489.498,-360.628,-442.411,-453.248,0,-81.8362,-47.0596,-57.7353 0|0:123:36,6,6,67:36:1390:6,6,67:235,220,2668:-204.091,-197.833,-310.182,-196.95,-294.01,-309.3,0,-97.0781,-96.1945,-94.0036 dDocent_Contig_2922 25 . T C 7902.24 . AB=0.723757;ABP=81.7232;AC=5;AF=0.625;AN=8;AO=235;CIGAR=1X;DP=285;DPB=285;DPRA=0;EPP=513.306;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=0.991489;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=9419;QR=2014;RO=50;RPL=0;RPP=513.306;RPPR=111.584;RPR=235;RUN=1;SAF=235;SAP=513.306;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:104:0,104:0:0:104:4185:-376.595,-31.3071,0 0/1:77:12,65:12:488:65:2584:-209.511,0,-21.0911 0/1:44:13,31:13:521:31:1256:-100.06,0,-33.9914 0/1:60:25,35:25:1005:35:1394:-107.65,0,-72.6825 dDocent_Contig_2923 4 . T C 126.341 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=4;CIGAR=2I1X2M1X;DP=7;DPB=9.5;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=135;QR=0;RO=0;RPL=0;RPP=11.6962;RPPR=0;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. 1|1:5:0,3:0:0:3:101:-9.22851,-0.90309,0 1|1:2:0,1:0:0:1:34:-3.09897,-0.30103,0 .:.:.:.:.:.:.:. dDocent_Contig_2925 1 . N G 893.288 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=31;CIGAR=1X;DP=31;DPB=31;DPRA=0;EPP=40.0654;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=0.0967742;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=972;QR=0;RO=0;RPL=0;RPP=70.3259;RPPR=0;RPR=31;RUN=1;SAF=4;SAP=40.0654;SAR=27;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:9:0,9:0:0:9:324:-29.5019,-2.70927,0 1/1:12:0,12:0:0:12:364:-33.0517,-3.61236,0 1/1:9:0,9:0:0:9:250:-22.772,-2.70927,0 1/1:1:0,1:0:0:1:34:-3.39891,-0.30103,0 dDocent_Contig_2926 60 . A G 198.715 . AB=0.137097;ABP=144.856;AC=1;AF=0.125;AN=8;AO=17;CIGAR=1X;DP=330;DPB=330;DPRA=1.80583;EPP=39.9253;EPPR=682.681;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=644;QR=11670;RO=313;RPL=17;RPP=39.9253;RPPR=682.681;RPR=0;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=313;SRP=682.681;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:111:111,0:111:4139:0:0:0,-33.4143,-372.611 0/1:124:107,17:107:4002:17:644:-20.9684,0,-322.96 0/0:70:70,0:70:2596:0:0:0,-21.0721,-233.833 0/0:25:25,0:25:933:0:0:0,-7.52575,-84.2806 dDocent_Contig_2927 16 . T C 71.7798 . AB=0.136364;ABP=53.5464;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=214;DPB=214;DPRA=1.14;EPP=20.3821;EPPR=448.162;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=314;QR=7503;RO=205;RPL=0;RPP=20.3821;RPPR=448.162;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=205;SRP=448.162;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:68:67,0:67:2462:0:0:0,-20.169,-221.483 0/0:70:68,2:68:2484:2:79:0,-13.5749,-216.267 0/1:44:38,6:38:1402:6:235:-8.27489,0,-113.218 0/0:32:32,0:32:1155:0:0:0,-9.63296,-104.233 dDocent_Contig_2928 7 . C A 57.0703 . AB=0.153846;ABP=30.0702;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=97;DPB=97;DPRA=1.09859;EPP=11.6962;EPPR=202.786;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=154;QR=3513;RO=92;RPL=0;RPP=11.6962;RPPR=202.786;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=92;SRP=202.786;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:21,4:21:809:4:154:-6.5029,0,-65.44 0/0:33:33,0:33:1239:0:0:0,-9.93399,-111.798 0/0:19:19,0:19:734:0:0:0,-5.71957,-66.3914 0/0:19:19,0:19:731:0:0:0,-5.71957,-66.1211 dDocent_Contig_2929 9 . T C 230.18 . AB=0.143885;ABP=156.123;AC=3;AF=0.375;AN=8;AO=27;CIGAR=1X;DP=225;DPB=225;DPRA=0;EPP=61.6401;EPPR=432.962;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1017;QR=7584;RO=198;RPL=0;RPP=61.6401;RPPR=432.962;RPR=27;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=198;SRP=432.962;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:86:79,7:79:3008:7:273:0,-0.950567,-245.945 0/1:64:57,7:57:2196:7:271:-5.49039,0,-178.597 0/1:50:40,10:40:1536:10:382:-19.6827,0,-123.46 0/1:25:22,3:22:844:3:91:-0.963538,0,-68.7563 dDocent_Contig_2930 42 . C T 6923.21 . AB=0.046875;ABP=231.286;AC=0;AF=0;AN=8;AO=6;CIGAR=1X3M2D8M1X2M1X2M1D5M1X6M;DP=445;DPB=450.03;DPRA=0;EPP=16.0391;EPPR=165.871;GTI=0;LEN=1;MEANALT=8.5;MQM=60;MQMR=60;NS=4;NUMALT=5;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=201;QR=2759;RO=75;RPL=6;RPP=16.0391;RPPR=165.871;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=75;SRP=165.871;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:163:52,0,60,0,35,5:52:1913:0,60,0,35,5:0,2068,0,1321,189:-152.317,-167.971,-324.392,0,-156.418,-138.356,-167.971,-324.392,-156.418,-324.392,-59.7231,-216.15,-48.176,-216.15,-205.614,-152.479,-308.901,-140.927,-308.901,-200.658,-307.395 0|0:154:19,0,63,10,53,1:19:699:0,63,10,53,1:0,2173,278,2045,41:-281.591,-287.31,-344.466,-110.792,-167.947,-148.982,-265.311,-322.466,-145.953,-319.456,-119.376,-176.537,0,-154.538,-160.582,-283.926,-341.081,-164.563,-319.081,-173.152,-340.78 0|0:80:3,5,32,0,25,7:3:110:5,32,0,25,7:166,1082,0,961,260:-156.732,-144.206,-151.693,-69.9275,-65.4921,-69.2874,-157.635,-153.198,-78.9203,-166.627,-78.7363,-74.2997,0,-87.7303,-80.2045,-136.358,-131.922,-57.6422,-145.351,-66.4496,-143.244 0|0:48:1,1,13,0,24,5:1:37:1,13,0,24,5:35,425,0,922,201:-106.671,-104.125,-106.851,-72.6651,-72.845,-71.7785,-106.972,-107.152,-75.6919,-109.999,-31.2723,-31.4524,0,-34.3004,-27.0757,-90.4034,-90.5832,-59.1237,-93.4307,-17.7212,-91.9255 dDocent_Contig_2931 23 . G A 816.158 . AB=0.309091;ABP=55.2441;AC=2;AF=0.25;AN=8;AO=51;CIGAR=1X1M1X;DP=667;DPB=667;DPRA=0.988024;EPP=4.07475;EPPR=1245.09;GTI=0;LEN=1;MEANALT=2;MQM=28.0588;MQMR=60;NS=4;NUMALT=2;ODDS=2.77556e-17;PAIRED=0;PAIREDR=0.979021;PAO=0;PQA=0;PQR=0;PRO=0;QA=1909;QR=22586;RO=572;RPL=0;RPP=113.755;RPPR=1245.09;RPR=51;RUN=1;SAF=28;SAP=4.07475;SAR=23;SRF=572;SRP=1245.09;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:197:187,9,0:187:7387:9,0:347,0:0,-27.8204,-632.925,-56.2926,-635.635,-664.128 0|1:168:149,17,0:149:5876:17,0:640,0:-7.55638,0,-478.297,-52.4098,-483.414,-535.848 0|0:137:126,4,0:126:5022:4,0:157,0:0,-24.985,-437.415,-37.9298,-438.619,-451.532 0|1:165:110,4,51:110:4301:4,51:150,1909:-76.2533,-97.0723,-449.521,0,-341.301,-338.235 dDocent_Contig_2932 5 . G A 1364.96 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=43;CIGAR=1X1M1X;DP=43;DPB=43;DPRA=0;EPP=96.3836;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=40.093;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=0.930233;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1573;QR=0;RO=0;RPL=0;RPP=96.3836;RPPR=0;RPR=43;RUN=1;SAF=43;SAP=96.3836;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:12:0,12:0:0:12:439:-37.3154,-3.61236,0 1|1:6:0,6:0:0:6:222:-19.2171,-1.80618,0 1|1:20:0,20:0:0:20:731:-63.4108,-6.0206,0 1|1:5:0,5:0:0:5:181:-15.9499,-1.50515,0 dDocent_Contig_2933 28 . C A 5783.41 . AB=0.625828;ABP=44.5415;AC=4;AF=0.5;AN=8;AO=189;CIGAR=1X;DP=302;DPB=302;DPRA=0;EPP=413.419;EPPR=248.387;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7482;QR=4517;RO=113;RPL=0;RPP=413.419;RPPR=248.387;RPR=189;RUN=1;SAF=189;SAP=413.419;SAR=0;SRF=113;SRP=248.387;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:77:15,62:15:598:62:2453:-197.749,0,-30.9777 0/1:107:61,46:61:2433:46:1808:-130.737,0,-186.897 0/1:82:24,58:24:966:58:2302:-182.667,0,-62.5551 0/1:36:13,23:13:520:23:919:-72.1786,0,-36.3082 dDocent_Contig_2934 52 . G A 68.8048 . AB=0.166667;ABP=31.9633;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=108;DPB=108;DPRA=1.15385;EPP=13.8677;EPPR=226.672;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=185;QR=4087;RO=103;RPL=5;RPP=13.8677;RPPR=226.672;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=103;SRP=226.672;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:34:34,0:34:1357:0:0:0,-10.235,-122.395 0/1:30:25,5:25:1004:5:185:-7.97739,0,-81.6263 0/0:27:27,0:27:1081:0:0:0,-8.12781,-97.5827 0/0:17:17,0:17:645:0:0:0,-5.11751,-58.3717 dDocent_Contig_2936 27 . T C 4316.73 . AB=0.550388;ABP=8.69989;AC=4;AF=0.5;AN=8;AO=142;CIGAR=1X;DP=258;DPB=258;DPRA=0;EPP=311.359;EPPR=254.901;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.978873;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5704;QR=4681;RO=116;RPL=0;RPP=311.359;RPPR=254.901;RPR=142;RUN=1;SAF=142;SAP=311.359;SAR=0;SRF=116;SRP=254.901;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:104:51,53:51:2059:53:2119:-159.566,0,-154.185 0/1:85:30,55:30:1213:55:2215:-173.915,0,-83.8551 0/1:40:19,21:19:760:21:856:-65.308,0,-56.6777 0/1:29:16,13:16:649:13:514:-37.8741,0,-50.0135 dDocent_Contig_2937 16 . T G 1781.54 . AB=0.360215;ABP=34.5784;AC=4;AF=0.5;AN=8;AO=67;CIGAR=1X;DP=186;DPB=186;DPRA=0;EPP=148.499;EPPR=261.416;GTI=0;LEN=1;MEANALT=1;MQM=52.5224;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2661;QR=4775;RO=119;RPL=0;RPP=148.499;RPPR=261.416;RPR=67;RUN=1;SAF=67;SAP=148.499;SAR=0;SRF=119;SRP=261.416;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:72:49,23:49:1955:23:920:-60.5062,0,-154.471 0/1:56:36,20:36:1445:20:787:-53.9753,0,-113.441 0/1:35:19,16:19:764:16:632:-46.3798,0,-58.5438 0/1:23:15,8:15:611:8:322:-22.2829,0,-48.4036 dDocent_Contig_2938 46 . C A 6132.8 . AB=0.723247;ABP=120.326;AC=4;AF=0.5;AN=8;AO=196;CIGAR=1X;DP=271;DPB=271;DPRA=0;EPP=402.96;EPPR=165.871;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.984694;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7767;QR=3006;RO=75;RPL=3;RPP=402.96;RPPR=165.871;RPR=193;RUN=1;SAF=196;SAP=428.619;SAR=0;SRF=75;SRP=165.871;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:79:18,61:18:710:61:2387:-191.208,0,-40.4324 0/1:101:22,79:22:889:79:3156:-253.709,0,-49.9135 0/1:29:3,26:3:116:26:1032:-84.4381,0,-2.08712 0/1:62:32,30:32:1291:30:1192:-88.8931,0,-97.7886 dDocent_Contig_2939 58 . T A 596.43 . AB=0.284091;ABP=38.6422;AC=3;AF=0.375;AN=8;AO=25;CIGAR=1X;DP=112;DPB=112;DPRA=1.22222;EPP=57.2971;EPPR=191.928;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=985;QR=3347;RO=87;RPL=25;RPP=57.2971;RPPR=191.928;RPR=0;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=87;SRP=191.928;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:47:30,17:30:1169:17:675:-46.9329,0,-91.3418 0/0:24:24,0:24:924:0:0:0,-7.22472,-83.4603 0/1:22:18,4:18:690:4:149:-7.14657,0,-55.7999 0/1:19:15,4:15:564:4:161:-9.15533,0,-45.3693 dDocent_Contig_2940 88 . A T 359.422 . AB=0.28125;ABP=29.6108;AC=1;AF=0.125;AN=8;AO=21;CIGAR=1X;DP=186;DPB=186;DPRA=1.26829;EPP=48.6112;EPPR=359.132;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=727;QR=5564;RO=164;RPL=21;RPP=48.6112;RPPR=359.132;RPR=0;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=164;SRP=359.132;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:57:57,0:57:1926:0:0:0,-17.1587,-173.621 0/1:64:46,18:46:1556:18:622:-37.039,0,-121.064 0/0:40:36,3:36:1223:3:105:0,-2.08397,-100.638 0/0:25:25,0:25:859:0:0:0,-7.52575,-77.6259 dDocent_Contig_2941 1 . N G 107.425 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=108;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0 ./.:.:.:.:.:.:.:. 1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0 ./.:.:.:.:.:.:.:. dDocent_Contig_2942 10 . A T 1572.78 . AB=0.195046;ABP=263.916;AC=4;AF=0.5;AN=8;AO=63;CIGAR=3M1X3M;DP=323;DPB=323;DPRA=0;EPP=139.813;EPPR=448.162;GTI=0;LEN=1;MEANALT=3.75;MQM=60;MQMR=59.8439;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=0.97561;PAO=0;PQA=0;PQR=0;PRO=0;QA=2518;QR=8001;RO=205;RPL=0;RPP=139.813;RPPR=448.162;RPR=63;RUN=1;SAF=63;SAP=139.813;SAR=0;SRF=205;SRP=448.162;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:123:72,4,5,34:72:2829:4,5,34:152,199,1347:-89.2279,-99.0882,-330.588,-94.5131,-315.405,-325.714,0,-220.932,-216.359,-222.511 0|1:88:66,11,6,5:66:2586:11,6,5:424,234,205:-13.5766,0,-209.311,-14.208,-193.388,-225.037,-16.5169,-195.701,-209.922,-227.652 0|1:79:45,14,4,16:45:1730:14,4,16:541,155,651:-40.1667,-10.5809,-148.373,-41.0344,-139.908,-181.844,0,-98.882,-129.344,-137.207 0|1:33:22,0,2,8:22:856:0,2,8:0,80,315:-19.2968,-25.9195,-96.245,-19.3271,-89.6541,-89.052,0,-70.3344,-63.7432,-67.9262 dDocent_Contig_2943 80 . T C 478.578 . AB=0.388889;ABP=8.80089;AC=1;AF=0.125;AN=8;AO=23;CIGAR=1X;DP=314;DPB=314;DPRA=0.635802;EPP=52.9542;EPPR=632.737;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.993103;PAO=0;PQA=0;PQR=0;PRO=0;QA=790;QR=10415;RO=290;RPL=23;RPP=52.9542;RPPR=632.737;RPR=0;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=290;SRP=632.737;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:108:108,0:108:3888:0:0:0,-32.5112,-350.107 0/0:110:108,1:108:3858:1:35:0,-29.6635,-343.903 0/1:54:33,21:33:1191:21:721:-48.9547,0,-91.2411 0/0:42:41,1:41:1478:1:34:0,-9.24435,-129.914 dDocent_Contig_2944 46 . G A 122.531 . AB=0.140625;ABP=74.8046;AC=1;AF=0.125;AN=8;AO=14;CIGAR=1X;DP=188;DPB=188;DPRA=1.625;EPP=33.4109;EPPR=380.846;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=559;QR=6901;RO=174;RPL=0;RPP=33.4109;RPPR=380.846;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=174;SRP=380.846;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:64:55,9:55:2166:9:355:-13.0453,0,-175.857 0/0:54:52,2:52:2083:2:82:0,-8.47594,-179.869 0/0:38:35,3:35:1396:3:122:0,-0.066647,-114.526 0/0:32:32,0:32:1256:0:0:0,-9.63296,-113.311 dDocent_Contig_2945 44 . C G 97.5867 . AB=0.150943;ABP=59.0998;AC=1;AF=0.125;AN=8;AO=10;CIGAR=1X;DP=155;DPB=155;DPRA=1.65385;EPP=24.725;EPPR=317.874;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=368;QR=5473;RO=145;RPL=0;RPP=24.725;RPPR=317.874;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=145;SRP=317.874;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:34:33,1:33:1192:1:35:0,-6.73639,-104.054 0/1:53:45,8:45:1713:8:294:-10.8556,0,-138.47 0/0:42:41,1:41:1562:1:39:0,-8.74669,-136.942 0/0:26:26,0:26:1006:0:0:0,-7.82678,-90.8475 dDocent_Contig_2946 29 . T C 85.3279 . AB=0.119048;ABP=108.895;AC=1;AF=0.125;AN=8;AO=12;CIGAR=1X;DP=189;DPB=189;DPRA=1.52;EPP=29.068;EPPR=385.189;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=461;QR=6631;RO=176;RPL=0;RPP=29.068;RPPR=385.189;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=176;SRP=385.189;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:84:73,10:73:2726:10:382:-9.32855,0,-220.108 0/0:50:50,0:50:1910:0:0:0,-15.0515,-172.128 0/0:25:25,0:25:948:0:0:0,-7.52575,-85.6305 0/0:30:28,2:28:1047:2:79:0,-1.53366,-87.0245 dDocent_Contig_2947 16 . C T 320.9 . AB=0.0462963;ABP=196.11;AC=1;AF=0.125;AN=8;AO=5;CIGAR=3M1X4M;DP=236;DPB=250.25;DPRA=0;EPP=13.8677;EPPR=337.417;GTI=0;LEN=1;MEANALT=5;MQM=60;MQMR=58.6364;NS=4;NUMALT=6;ODDS=0;PAIRED=0;PAIREDR=0.811688;PAO=0;PQA=0;PQR=0;PRO=0;QA=200;QR=6011;RO=154;RPL=0;RPP=13.8677;RPPR=337.417;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=154;SRP=337.417;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:84:53,0,7,1,8,5,1:53:2063:0,7,1,8,5,1:0,279,40,311,180,39:-9.59989,-25.5545,-187.185,-2.57558,-164.207,-162.1,-22.3866,-184.017,-161.039,-183.716,0,-161.629,-138.651,-158.461,-159.221,-10.8796,-172.505,-149.528,-169.337,-146.95,-171,-22.3486,-183.979,-161.001,-180.811,-158.423,-169.299,-183.678 0|0:81:55,0,5,6,2,0,0:55:2141:0,5,6,2,0,0:0,202,224,73,0,0:-1.78019,-18.3368,-194.286,-1.67691,-177.632,-176.127,0,-175.95,-159.295,-174.143,-12.3739,-188.323,-171.668,-169.986,-187.721,-18.3368,-194.286,-177.632,-175.95,-188.323,-194.286,-18.3368,-194.286,-177.632,-175.95,-188.323,-194.286,-194.286 0|0:47:26,5,3,3,0,8,0:26:1031:5,3,3,0,8,0:193,118,109,0,314,0:-18.0039,-9.97956,-93.3534,-16.1303,-85.1599,-100.106,-16.9336,-85.9605,-92.111,-100.906,-25.8307,-94.8585,-101.009,-101.809,-110.708,0,-69.0342,-75.1846,-75.9854,-84.8833,-82.4751,-25.8307,-94.8585,-101.009,-101.809,-110.708,-84.8833,-110.708 0|1:24:20,0,0,0,0,0,4:20:776:0,0,0,0,0,4:0,0,0,0,0,161:-7.65055,-13.6712,-77.415,-13.6712,-77.415,-77.415,-13.6712,-77.415,-77.415,-77.415,-13.6712,-77.415,-77.415,-77.415,-77.415,-13.6712,-77.415,-77.415,-77.415,-77.415,-77.415,0,-64.1435,-64.1435,-64.1435,-64.1435,-64.1435,-62.9394 dDocent_Contig_2948 70 . C T 15496.3 . AB=0.492424;ABP=3.53672;AC=4;AF=0.5;AN=8;AO=520;CIGAR=1X;DP=1056;DPB=1056;DPRA=0;EPP=1132.18;EPPR=1125.66;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=20757;QR=20425;RO=517;RPL=520;RPP=1132.18;RPPR=1125.66;RPR=0;RUN=1;SAF=520;SAP=1132.18;SAR=0;SRF=517;SRP=1125.66;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:362:177,169:177:7038:169:6759:-503.46,0,-528.544 0/1:270:133,134:133:5264:134:5388:-403.981,0,-392.848 0/1:229:108,121:108:4261:121:4843:-366.834,0,-314.512 0/1:195:99,96:99:3862:96:3767:-280.342,0,-288.892 dDocent_Contig_2949 1 . N G 110.972 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.29832;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=119;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:119:-11.095,-0.90309,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_2950 95 . T A 278.965 . AB=0.222222;ABP=51.2652;AC=1;AF=0.125;AN=8;AO=16;CIGAR=1X;DP=286;DPB=286;DPRA=1.00935;EPP=37.7539;EPPR=589.308;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=556;QR=9438;RO=270;RPL=16;RPP=37.7539;RPPR=589.308;RPR=0;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=270;SRP=589.308;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:72:56,16:56:1992:16:556:-28.6923,0,-157.878 0/0:73:73,0:73:2603:0:0:0,-21.9752,-234.518 0/0:91:91,0:91:3120:0:0:0,-27.3937,-281.017 0/0:50:50,0:50:1723:0:0:0,-15.0515,-155.346 dDocent_Contig_2951 23 . A G 332.524 . AB=0.254237;ABP=33.963;AC=4;AF=0.5;AN=8;AO=15;CIGAR=1X;DP=59;DPB=59;DPRA=0;EPP=35.5824;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=605;QR=1767;RO=44;RPL=0;RPP=35.5824;RPPR=98.5551;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:19,3:19:767:3:120:-4.56465,0,-62.7283 0/1:20:13,7:13:513:7:280:-19.5505,0,-40.4937 0/1:8:6,2:6:242:2:82:-5.37144,0,-19.7487 0/1:9:6,3:6:245:3:123:-8.75552,0,-19.7202 dDocent_Contig_2954 88 . C A 97.8762 . AB=0.294118;ABP=9.26925;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=64;DPB=64;DPRA=1.08511;EPP=13.8677;EPPR=131.127;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=174;QR=2027;RO=59;RPL=5;RPP=13.8677;RPPR=131.127;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=59;SRP=131.127;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:33:33,0:33:1126:0:0:0,-9.93399,-101.646 0/1:17:12,5:12:414:5:174:-10.8844,0,-32.4739 0/0:8:8,0:8:278:0:0:0,-2.40824,-25.358 0/0:6:6,0:6:209:0:0:0,-1.80618,-19.1511 dDocent_Contig_2955 64 . G A 2641.42 . AB=0.262411;ABP=210.409;AC=3;AF=0.375;AN=8;AO=122;CIGAR=1X;DP=564;DPB=564;DPRA=0;EPP=267.93;EPPR=960.63;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.988662;PAO=0;PQA=0;PQR=0;PRO=0;QA=4816;QR=17361;RO=441;RPL=122;RPP=267.93;RPPR=960.63;RPR=0;RUN=1;SAF=122;SAP=267.93;SAR=0;SRF=441;SRP=960.63;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:141:130,11:130:5139:11:434:0,-3.0336,-422.996 0/1:161:107,54:107:4196:54:2138:-144.135,0,-329.152 0/1:143:104,38:104:4106:38:1494:-91.6004,0,-326.428 0/1:119:100,19:100:3920:19:750:-31.9987,0,-316.987 dDocent_Contig_2956 90 . T G 87.8892 . AB=0.147059;ABP=76.5849;AC=2;AF=0.25;AN=8;AO=10;CIGAR=1X;DP=121;DPB=121;DPRA=1.28302;EPP=24.725;EPPR=244.044;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.927928;PAO=0;PQA=0;PQR=0;PRO=0;QA=342;QR=3708;RO=111;RPL=10;RPP=24.725;RPPR=244.044;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=111;SRP=244.044;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:18:18,0:18:611:0:0:0,-5.41854,-55.3101 0/0:35:35,0:35:1159:0:0:0,-10.536,-104.606 0/1:40:34,6:34:1116:6:206:-6.83552,0,-88.695 0/1:28:24,4:24:822:4:136:-4.14702,0,-65.8675 dDocent_Contig_2957 7 . A C 12656.9 . AB=0.18747;ABP=1749.86;AC=4;AF=0.5;AN=8;AO=386;CIGAR=2X1M;DP=2059;DPB=2085;DPRA=0;EPP=841.199;EPPR=2313.46;GTI=0;LEN=1;MEANALT=6.75;MQM=58.943;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.994819;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=14732;QR=40566;RO=1064;RPL=0;RPP=841.199;RPPR=2313.46;RPR=386;RUN=1;SAF=386;SAP=841.199;SAR=0;SRF=1064;SRP=2313.46;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:659:349,153,128:349:13304:153,128:5849,4907:-366.496,0,-1045.32,-68.937,-688.767,-1121.79 0|1:610:298,168,113:298:11356:168,113:6408,4332:-432.425,0,-880.974,-166.628,-576.044,-1064.16 0|1:515:275,124,76:275:10479:124,76:4732,2883:-300.965,0,-822.281,-148.205,-624.066,-984.936 0|1:275:142,29,69:142:5427:29,69:1109,2610:-170.793,-122.779,-559.356,0,-354.549,-424.537 dDocent_Contig_2958 8 . C T 448.376 . AB=0.230088;ABP=74.5152;AC=3;AF=0.375;AN=8;AO=36;CIGAR=1X;DP=233;DPB=233;DPRA=0;EPP=81.1833;EPPR=428.619;GTI=0;LEN=1;MEANALT=1.25;MQM=39.8333;MQMR=28.3724;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1390;QR=7490;RO=196;RPL=0;RPP=81.1833;RPPR=428.619;RPR=36;RUN=1;SAF=36;SAP=81.1833;SAR=0;SRF=196;SRP=428.619;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:120:110,10:110:4224:10:387:0,-4.84067,-225.906 0/1:49:41,7:41:1563:7:262:-4.29608,0,-62.9952 0/1:46:30,16:30:1127:16:624:-38.9657,0,-53.2375 0/1:18:15,3:15:576:3:117:-5.16737,0,-27.3091 dDocent_Contig_2960 127 . A G 7274.75 . AB=0.856574;ABP=280.206;AC=6;AF=0.75;AN=8;AO=252;CIGAR=1X4M;DP=289;DPB=289;DPRA=0;EPP=550.221;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1.75;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=8511;QR=757;RO=22;RPL=0;RPP=550.221;RPPR=50.7827;RPR=252;RUN=1;SAF=0;SAP=550.221;SAR=252;SRF=0;SRP=50.7827;SRR=22;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:96:0,13,83:0:0:13,83:444,2789:-262.303,-226.27,-222.356,-36.374,0,-11.3885 0|1:100:15,0,84:15:516:0,84:0,2855:-227.046,-231.562,-273.47,0,-41.9024,-16.6159 0|1:55:7,0,48:7:241:0,48:0,1591:-126.915,-129.022,-148.599,0,-19.9192,-5.46975 1|1:38:0,0,37:0:0:0,37:0,1276:-114.802,-114.802,-114.802,-11.1381,-11.1381,0 dDocent_Contig_2962 11 . T A 742.266 . AB=0.329545;ABP=25.2185;AC=3;AF=0.375;AN=8;AO=30;CIGAR=2X;DP=122;DPB=122;DPRA=0;EPP=68.1545;EPPR=202.786;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1187;QR=3614;RO=92;RPL=0;RPP=68.1545;RPPR=202.786;RPR=30;RUN=1;SAF=30;SAP=68.1545;SAR=0;SRF=92;SRP=202.786;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:14:8,6:8:310:6:244:-18.1244,0,-24.0473 0|1:41:23,18:23:899:18:708:-51.7057,0,-68.8818 0|0:34:33,1:33:1305:1:40:0,-6.23934,-113.731 0|1:33:28,5:28:1100:5:195:-7.98826,0,-89.3624 dDocent_Contig_2963 77 . C T 169.61 . AB=0.222222;ABP=27.1378;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=155;DPB=155;DPRA=0.907563;EPP=20.3821;EPPR=322.217;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.993197;PAO=0;PQA=0;PQR=0;PRO=0;QA=317;QR=5853;RO=147;RPL=8;RPP=20.3821;RPPR=322.217;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=147;SRP=322.217;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:60:60,0:60:2399:0:0:0,-18.0618,-216.057 0/0:47:47,0:47:1889:0:0:0,-14.1484,-170.212 0/0:12:12,0:12:488:0:0:0,-3.61236,-44.2713 0/1:36:28,8:28:1077:8:317:-18.0579,0,-86.3742 dDocent_Contig_2965 123 . G A 37.6977 . AB=0.122449;ABP=63.6786;AC=2;AF=0.25;AN=8;AO=6;CIGAR=1X;DP=70;DPB=70;DPRA=2.33333;EPP=16.0391;EPPR=141.985;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=222;QR=2268;RO=64;RPL=0;RPP=16.0391;RPPR=141.985;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=141.985;SRR=64;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:21,3:21:754:3:111:-3.1292,0,-60.9595 0/1:25:22,3:22:768:3:111:-2.82817,0,-61.906 0/0:16:16,0:16:578:0:0:0,-4.81648,-52.3527 0/0:5:5,0:5:168:0:0:0,-1.50515,-15.45 dDocent_Contig_2966 9 . G A 197.388 . AB=0.137405;ABP=152.61;AC=2;AF=0.25;AN=8;AO=22;CIGAR=1X;DP=251;DPB=251;DPRA=0;EPP=50.7827;EPPR=500.277;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=821;QR=8656;RO=229;RPL=0;RPP=50.7827;RPPR=500.277;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=229;SRP=500.277;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:42:39,3:39:1452:3:117:0,-1.73288,-120.041 0/1:73:61,12:61:2292:12:449:-18.7806,0,-184.515 0/1:58:52,6:52:1972:6:225:-3.15004,0,-160.252 0/0:78:77,1:77:2940:1:30:0,-20.4808,-261.768 dDocent_Contig_2967 40 . C T 60.1348 . AB=0.235294;ABP=13.3567;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=99;DPB=99;DPRA=0.621951;EPP=11.6962;EPPR=209.3;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=129;QR=3743;RO=95;RPL=0;RPP=11.6962;RPPR=209.3;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=95;SRP=209.3;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:13,4:13:509:4:129:-6.80922,0,-41.0357 0/0:54:54,0:54:2128:0:0:0,-16.2556,-191.699 0/0:23:23,0:23:904:0:0:0,-6.92369,-81.6657 0/0:5:5,0:5:202:0:0:0,-1.50515,-18.5621 dDocent_Contig_2968 107 . N T 968.69 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=31;CIGAR=1X;DP=32;DPB=32;DPRA=0;EPP=70.3259;EPPR=0;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1056;QR=0;RO=0;RPL=0;RPP=70.3259;RPPR=0;RPR=31;RUN=1;SAF=0;SAP=70.3259;SAR=31;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:23:0,22:0:0:22:746:-67.3741,-6.62266,0 1/1:1:0,1:0:0:1:30:-2.99957,-0.30103,0 1/1:6:0,6:0:0:6:210:-19.2425,-1.80618,0 1/1:2:0,2:0:0:2:70:-6.6474,-0.60206,0 dDocent_Contig_2970 7 . A C 2128.31 . AB=0.39801;ABP=21.1707;AC=4;AF=0.5;AN=8;AO=80;CIGAR=1X;DP=201;DPB=201;DPRA=0;EPP=176.728;EPPR=265.758;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3078;QR=4571;RO=121;RPL=0;RPP=176.728;RPPR=265.758;RPR=80;RUN=1;SAF=80;SAP=176.728;SAR=0;SRF=121;SRP=265.758;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:69:27,42:27:1032:42:1617:-125.025,0,-72.4174 0/1:43:27,16:27:997:16:622:-43.3759,0,-77.0874 0/1:52:40,12:40:1505:12:450:-25.19,0,-120.073 0/1:37:27,10:27:1037:10:389:-24.2303,0,-82.4982 dDocent_Contig_2971 16 . C T 6027.04 . AB=0.334802;ABP=164.436;AC=4;AF=0.5;AN=8;AO=228;CIGAR=1X;DP=681;DPB=681;DPRA=0;EPP=498.106;EPPR=986.687;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=9022;QR=18103;RO=453;RPL=0;RPP=498.106;RPPR=986.687;RPR=228;RUN=1;SAF=228;SAP=498.106;SAR=0;SRF=453;SRP=986.687;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:235:143,92:143:5688:92:3638:-256.718,0,-441.005 0/1:171:103,68:103:4137:68:2673:-189.239,0,-320.825 0/1:173:126,47:126:5025:47:1870:-116.437,0,-400.064 0/1:102:81,21:81:3253:21:841:-45.3003,0,-262.122 dDocent_Contig_2972 1 . N G 422.519 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=12;CIGAR=1X;DP=12;DPB=12;DPRA=0;EPP=29.068;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0.333333;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=458;QR=0;RO=0;RPL=0;RPP=29.068;RPPR=0;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:6:0,6:0:0:6:228:-20.8843,-1.80618,0 ./.:.:.:.:.:.:.:. 1/1:6:0,6:0:0:6:230:-21.0663,-1.80618,0 ./.:.:.:.:.:.:.:. dDocent_Contig_2973 40 . G A 9372.58 . AB=0.813433;ABP=231.696;AC=5;AF=0.625;AN=8;AO=291;CIGAR=1X;DP=345;DPB=345;DPRA=0;EPP=634.909;EPPR=113.755;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=53.8627;NS=4;NUMALT=1;ODDS=0;PAIRED=0.199313;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=11388;QR=2017;RO=51;RPL=0;RPP=634.909;RPPR=113.755;RPR=291;RUN=1;SAF=291;SAP=634.909;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:113:20,93:20:778:93:3659:-295.34,0,-33.2473 0/1:106:25,81:25:1002:81:3161:-252.677,0,-44.2124 1/1:77:1,73:1:39:73:2866:-254.165,-18.7655,0 0/1:49:5,44:5:198:44:1702:-138.666,0,-3.4464 dDocent_Contig_2975 88 . G A 68.2837 . AB=0.163265;ABP=51.2702;AC=2;AF=0.25;AN=8;AO=10;CIGAR=1X;DP=111;DPB=111;DPRA=2.13333;EPP=24.725;EPPR=222.329;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=308;QR=3307;RO=101;RPL=10;RPP=24.725;RPPR=222.329;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=101;SRP=222.329;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:47:45,2:45:1462:2:51:0,-9.30372,-127.025 0/1:16:13,3:13:435:3:101:-4.60729,0,-34.655 0/1:33:28,5:28:919:5:156:-4.41473,0,-73.0815 0/0:15:15,0:15:491:0:0:0,-4.51545,-44.5054 dDocent_Contig_2976 22 . A G 227.418 . AB=0.15;ABP=109.412;AC=3;AF=0.375;AN=8;AO=15;CIGAR=1X;DP=180;DPB=180;DPRA=0.416667;EPP=35.5824;EPPR=359.132;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=607;QR=6494;RO=164;RPL=0;RPP=35.5824;RPPR=359.132;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=164;SRP=359.132;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:80:79,0:79:3105:0:0:0,-23.7814,-279.123 0/1:48:41,7:41:1650:7:281:-11.2116,0,-134.278 0/1:29:23,6:23:895:6:245:-13.6996,0,-72.1222 0/1:23:21,2:21:844:2:81:-0.762044,0,-69.3502 dDocent_Contig_2977 16 . G A 77.5569 . AB=0.113402;ABP=128.933;AC=1;AF=0.125;AN=8;AO=16;CIGAR=2X;DP=257;DPB=257;DPRA=1.98198;EPP=37.7539;EPPR=524.164;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=614;QR=9273;RO=240;RPL=0;RPP=37.7539;RPPR=524.164;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=240;SRP=524.164;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:101:97,4:97:3775:4:153:0,-16.2628,-325.674 0|1:97:85,11:85:3314:11:420:-8.85259,0,-269.054 0|0:37:37,0:37:1400:0:0:0,-11.1381,-126.262 0|0:22:21,1:21:784:1:41:0,-2.52809,-66.7771 dDocent_Contig_2978 98 . N A 46.5802 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=4.60517;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=49;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:49:-4.65369,-0.60206,0 dDocent_Contig_2979 1 . N G 116.114 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=117;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:1:0,1:0:0:1:40:-3.99568,-0.30103,0 1/1:2:0,2:0:0:2:77:-7.3082,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_2980 115 . G A 573.23 . AB=0.176955;ABP=223.276;AC=4;AF=0.5;AN=8;AO=43;CIGAR=1X1M2I2M;DP=243;DPB=264.5;DPRA=0;EPP=96.3836;EPPR=437.305;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.976744;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1483;QR=6763;RO=200;RPL=0;RPP=96.3836;RPPR=437.305;RPR=43;RUN=1;SAF=0;SAP=96.3836;SAR=43;SRF=0;SRP=437.305;SRR=200;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:100:72,28:72:2446:28:969:-57.4177,0,-190.3 0|1:90:81,9:81:2745:9:311:-1.23259,0,-220.21 0|1:34:30,4:30:1018:4:132:-1.97106,0,-81.6915 0|1:19:17,2:17:554:2:71:-1.02249,0,-44.4504 dDocent_Contig_2981 14 . G A 3749.08 . AB=0.359173;ABP=69.6751;AC=4;AF=0.5;AN=8;AO=139;CIGAR=1X;DP=387;DPB=387;DPRA=0;EPP=304.845;EPPR=541.535;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.991935;PAO=0;PQA=0;PQR=0;PRO=0;QA=5504;QR=9775;RO=248;RPL=0;RPP=304.845;RPPR=541.535;RPR=139;RUN=1;SAF=139;SAP=304.845;SAR=0;SRF=248;SRP=541.535;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:99:76,23:76:2922:23:913:-52.6747,0,-233.278 0/1:76:34,42:34:1352:42:1628:-123.876,0,-99.0628 0/1:122:70,52:70:2783:52:2083:-150.931,0,-213.859 0/1:90:68,22:68:2718:22:880:-52.416,0,-217.648 dDocent_Contig_2982 22 . A T 262.937 . AB=0.182927;ABP=74.6159;AC=1;AF=0.125;AN=8;AO=29;CIGAR=1X;DP=417;DPB=417;DPRA=0;EPP=65.983;EPPR=843.37;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=0.981912;PAO=0;PQA=0;PQR=0;PRO=0;QA=1141;QR=15388;RO=387;RPL=0;RPP=65.983;RPPR=843.37;RPR=29;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=387;SRP=843.37;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:140:131,8:131:5228:8:325:0,-12.6328,-440.762 0/1:82:67,15:67:2640:15:575:-27.3906,0,-213.047 0/0:129:125,4:125:4989:4:160:0,-24.0494,-434.104 0/0:66:64,2:64:2531:2:81:0,-12.1822,-220.25 dDocent_Contig_2983 7 . A C 2382.19 . AB=0.469945;ABP=4.44608;AC=4;AF=0.5;AN=8;AO=86;CIGAR=1X;DP=183;DPB=183;DPRA=0;EPP=189.757;EPPR=213.643;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3300;QR=3716;RO=97;RPL=0;RPP=189.757;RPPR=213.643;RPR=86;RUN=1;SAF=86;SAP=189.757;SAR=0;SRF=97;SRP=213.643;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:51:38,13:38:1464:13:504:-30.3564,0,-116.684 0/1:39:5,34:5:183:34:1297:-105.277,0,-5.0846 0/1:39:24,15:24:918:15:581:-40.8929,0,-71.1976 0/1:54:30,24:30:1151:24:918:-66.682,0,-87.6352 dDocent_Contig_2985 58 . G T 945.972 . AB=0.184028;ABP=252.76;AC=4;AF=0.5;AN=8;AO=53;CIGAR=1X;DP=288;DPB=288;DPRA=0;EPP=118.098;EPPR=513.306;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=0.924528;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2048;QR=9254;RO=235;RPL=53;RPP=118.098;RPPR=513.306;RPR=0;RUN=1;SAF=53;SAP=118.098;SAR=0;SRF=235;SRP=513.306;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:87:67,20:67:2619:20:751:-41.7055,0,-209.669 0/1:90:72,18:72:2865:18:704:-36.5934,0,-230.876 0/1:76:64,12:64:2507:12:471:-19.8612,0,-202.903 0/1:35:32,3:32:1263:3:122:-0.836443,0,-103.407 dDocent_Contig_2986 193 . A G 472.668 . AB=0.207207;ABP=85.6632;AC=2;AF=0.25;AN=8;AO=28;CIGAR=1X;DP=200;DPB=200;DPRA=0;EPP=63.8115;EPPR=376.504;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1110;QR=6641;RO=172;RPL=28;RPP=63.8115;RPPR=376.504;RPR=0;RUN=1;SAF=0;SAP=63.8115;SAR=28;SRF=0;SRP=376.504;SRR=172;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:72:58,14:58:2246:14:555:-28.6181,0,-180.654 0/0:64:60,4:60:2323:4:156:0,-4.84948,-194.828 0/1:39:30,9:30:1161:9:358:-20.8425,0,-93.0304 0/0:25:24,1:24:911:1:41:0,-3.43118,-78.2038 dDocent_Contig_2987 17 . A T 382.168 . AB=0.146739;ABP=202.455;AC=3;AF=0.375;AN=8;AO=28;CIGAR=1M1D1M1X3M1X;DP=250;DPB=247.125;DPRA=0;EPP=63.8115;EPPR=465.534;GTI=0;LEN=1;MEANALT=2;MQM=56.75;MQMR=56.615;NS=4;NUMALT=1;ODDS=0;PAIRED=0.964286;PAIREDR=0.981221;PAO=0;PQA=0;PQR=0;PRO=0;QA=1097;QR=8390;RO=213;RPL=0;RPP=63.8115;RPPR=465.534;RPR=28;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=213;SRP=465.534;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:74:64,6:64:2522:6:238:-0.370379,0,-202.653 0|0:66:63,1:63:2478:1:39:0,-15.7556,-217.774 0|1:65:51,11:51:2008:11:426:-18.4018,0,-160.909 0|1:45:35,10:35:1382:10:394:-21.9987,0,-110.819 dDocent_Contig_2989 165 . G A 126.481 . AB=0.294118;ABP=9.26925;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=46;DPB=46;DPRA=1.75862;EPP=13.8677;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=202;QR=1608;RO=41;RPL=5;RPP=13.8677;RPPR=92.0407;RPR=0;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=92.0407;SRR=41;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:12,5:12:473:5:202:-13.444,0,-37.7988 0/0:10:10,0:10:388:0:0:0,-3.0103,-35.2734 0/0:7:7,0:7:259:0:0:0,-2.10721,-23.6571 0/0:12:12,0:12:488:0:0:0,-3.61236,-44.2715 dDocent_Contig_2990 8 . C T 4526.74 . AB=0.693467;ABP=67.7071;AC=4;AF=0.5;AN=8;AO=138;CIGAR=2X;DP=199;DPB=199;DPRA=0;EPP=302.673;EPPR=70.3259;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5243;QR=1189;RO=31;RPL=0;RPP=302.673;RPPR=70.3259;RPR=138;RUN=1;SAF=138;SAP=302.673;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:75:11,64,0,0:11:419:64,0,0:2422,0,0:-195.618,0,-15.4845,-198.93,-34.7504,-233.3,-198.93,-34.7504,-233.3,-233.3 0|1:64:15,46,2,1:15:580:46,2,1:1752,78,39:-139.186,0,-33.7911,-137.289,-41.2263,-184.329,-140.495,-44.4324,-181.726,-187.836 1|0:38:0,21,12,5:0:0:21,12,5:798,443,195:-101.661,-36.2139,-29.8923,-65.4362,0,-61.8239,-85.6295,-20.1784,-49.4049,-84.1244 1|0:22:5,7,5,5:5:190:7,5,5:271,194,189:-21.1215,-0.362506,-13.8358,-6.68523,0,-20.7606,-7.13688,-0.45248,-6.77504,-21.211 dDocent_Contig_2991 7 . C A 459.533 . AB=0.339623;ABP=14.851;AC=1;AF=0.125;AN=8;AO=19;CIGAR=1X;DP=168;DPB=168;DPRA=1;EPP=44.2683;EPPR=326.56;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=731;QR=5730;RO=149;RPL=0;RPP=44.2683;RPPR=326.56;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=149;SRP=326.56;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:53:35,18:35:1348:18:693:-46.7492,0,-105.65 0/0:57:57,0:57:2204:0:0:0,-17.1587,-198.578 0/0:27:27,0:27:1040:0:0:0,-8.12781,-93.909 0/0:31:30,1:30:1138:1:38:0,-5.53466,-98.9185 dDocent_Contig_2994 26 . C T 194.283 . AB=0.180328;ABP=57.1547;AC=2;AF=0.25;AN=8;AO=15;CIGAR=1X;DP=154;DPB=154;DPRA=0;EPP=35.5824;EPPR=304.845;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=0.533333;PAIREDR=0.532374;PAO=0;PQA=0;PQR=0;PRO=0;QA=599;QR=5527;RO=139;RPL=0;RPP=35.5824;RPPR=304.845;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=139;SRP=304.845;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:43:36,7:36:1428:7:282:-12.8083,0,-115.826 0/0:62:59,3:59:2351:3:122:0,-7.29137,-200.369 0/0:31:30,1:30:1181:1:41:0,-5.23736,-102.475 0/1:18:14,4:14:567:4:154:-8.81383,0,-45.9539 dDocent_Contig_2995 98 . N C 2882.17 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=96;CIGAR=1X;DP=96;DPB=96;DPRA=0;EPP=211.472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=4;NUMALT=1;ODDS=1.35525e-20;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=3181;QR=0;RO=0;RPL=96;RPP=211.472;RPPR=0;RPR=0;RUN=1;SAF=96;SAP=211.472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:29:0,29:0:0:29:950:-85.7995,-8.72987,0 1/1:45:0,45:0:0:45:1505:-135.741,-13.5464,0 1/1:13:0,13:0:0:13:427:-38.7452,-3.91339,0 1/1:9:0,9:0:0:9:299:-27.2331,-2.70927,0 dDocent_Contig_2997 14 . C A 2199.19 . AB=0.229167;ABP=278.244;AC=4;AF=0.5;AN=8;AO=99;CIGAR=1X;DP=432;DPB=432;DPRA=0;EPP=217.986;EPPR=726.111;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3931;QR=13381;RO=333;RPL=0;RPP=217.986;RPPR=726.111;RPR=99;RUN=1;SAF=99;SAP=217.986;SAR=0;SRF=333;SRP=726.111;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:218:162,56:162:6535:56:2237:-135.871,0,-522.222 0/1:124:108,16:108:4325:16:629:-19.6114,0,-351.863 0/1:65:45,20:45:1817:20:802:-52.9291,0,-144.167 0/1:25:18,7:18:704:7:263:-16.4969,0,-56.161 dDocent_Contig_2998 9 . A G 1478.47 . AB=0.314433;ABP=61.0356;AC=4;AF=0.5;AN=8;AO=61;CIGAR=1X;DP=194;DPB=194;DPRA=0;EPP=135.47;EPPR=291.816;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2332;QR=5104;RO=133;RPL=0;RPP=135.47;RPPR=291.816;RPR=61;RUN=1;SAF=61;SAP=135.47;SAR=0;SRF=133;SRP=291.816;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:62:53,9:53:2037:9:341:-12.3816,0,-164.902 0/1:44:32,12:32:1213:12:462:-28.6857,0,-96.2198 0/1:65:40,25:40:1551:25:957:-66.8735,0,-120.292 0/1:23:8,15:8:303:15:572:-44.8955,0,-20.7048 dDocent_Contig_2999 20 . C T 41.1645 . AB=0.166667;ABP=20.3821;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=103;DPB=103;DPRA=0.938272;EPP=18.2106;EPPR=211.472;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=267;QR=3679;RO=96;RPL=0;RPP=18.2106;RPPR=211.472;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=96;SRP=211.472;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:27:27,0:27:1031:0:0:0,-8.12781,-93.0904 0/0:29:27,2:27:1054:2:80:0,-1.13808,-87.5665 0/0:29:27,2:27:1016:2:73:0,-1.79877,-84.8021 0/1:18:15,3:15:578:3:114:-5.21294,0,-46.9382 dDocent_Contig_3000 77 . T C 14190.7 . AB=0.881226;ABP=332.483;AC=6;AF=0.75;AN=8;AO=450;CIGAR=2X;DP=492;DPB=492;DPRA=0;EPP=980.173;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=17021;QR=1446;RO=41;RPL=450;RPP=980.173;RPPR=92.0407;RPR=0;RUN=1;SAF=450;SAP=980.173;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:89:0,89:0:0:89:3380:-304.347,-26.7917,0 0|1:167:16,151:16:572:151:5726:-465.043,0,-1.53963 1|1:142:10,131:10:357:131:4932:-411.455,-10.2158,0 0|1:94:15,79:15:517:79:2983:-240.348,0,-18.5575 dDocent_Contig_3001 107 . N G 66.5172 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=4.60517;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=70;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:70:-6.6474,-0.60206,0 dDocent_Contig_3002 98 . N A 151.429 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=5;CIGAR=2X;DP=5;DPB=9;DPRA=0;EPP=13.8677;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=4;PQA=136;PQR=0;PRO=0;QA=165;QR=0;RO=0;RPL=5;RPP=13.8677;RPPR=0;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. 1|1:4:0,4:0:0:4:130:-11.6831,-1.20412,0 1|1:1:0,1:0:0:1:35:-3.15375,-0.30103,0 .:.:.:.:.:.:.:. dDocent_Contig_3004 7 . C T 280.701 . AB=0.47619;ABP=3.1137;AC=1;AF=0.125;AN=8;AO=10;CIGAR=1X;DP=47;DPB=47;DPRA=2.42308;EPP=24.725;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=387;QR=1417;RO=37;RPL=0;RPP=24.725;RPPR=83.3548;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:11,10:11:426:10:387:-28.8659,0,-32.3731 0/0:8:8,0:8:293:0:0:0,-2.40824,-26.7178 0/0:12:12,0:12:464:0:0:0,-3.61236,-42.1115 0/0:6:6,0:6:234:0:0:0,-1.80618,-21.4311 dDocent_Contig_3005 107 . N G 64.2299 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=47;MQMR=0;NS=1;NUMALT=1;ODDS=4.60517;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=68;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:68:-6.41867,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_3006 32 . A G 23109.8 . AB=0.024;ABP=1971.02;AC=0;AF=0;AN=8;AO=24;CIGAR=1X1M1X;DP=1000;DPB=1000;DPRA=0;EPP=55.1256;EPPR=139.813;GTI=0;LEN=1;MEANALT=6.5;MQM=60;MQMR=60;NS=4;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=902;QR=2478;RO=63;RPL=0;RPP=55.1256;RPPR=139.813;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=63;SRP=139.813;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:357:18,4,30,18,275:18:710:4,30,18,275:155,1180,708,10516:-895.939,-888.624,-945.838,-804.295,-849.979,-853.682,-843.118,-888.801,-804.472,-896.117,-38.6465,-84.3317,0,-38.8243,-14.2824 0|0:326:26,3,33,35,211:26:1020:3,33,35,211:121,1287,1367,8250:-698.877,-696.729,-779.706,-600.922,-674.827,-674.867,-594.33,-668.235,-572.428,-667.673,-28.4934,-102.398,-6.59208,0,-48.8556 0|0:207:14,14,25,11,132:14:549:14,25,11,132:508,969,430,4978:-438.099,-400.851,-441.783,-362.713,-366.397,-400.334,-406.96,-410.644,-372.506,-448.795,-34.4539,-38.1417,0,-44.2472,-39.8651 0|0:110:5,3,23,7,71:5:199:3,23,7,71:118,870,284,2792:-283.052,-274.851,-290.334,-213.257,-219.938,-222.72,-261.134,-267.815,-206.221,-275.413,-54.9031,-61.5844,0,-47.8649,-49.9174 dDocent_Contig_3008 27 . C G 3246.38 . AB=0.299087;ABP=156.58;AC=4;AF=0.5;AN=8;AO=131;CIGAR=2X;DP=438;DPB=438;DPRA=0;EPP=287.473;EPPR=669.652;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5115;QR=12082;RO=307;RPL=0;RPP=287.473;RPPR=669.652;RPR=131;RUN=1;SAF=131;SAP=287.473;SAR=0;SRF=307;SRP=669.652;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:124:57,67:57:2253:67:2602:-197.027,0,-165.627 0|1:182:164,18:164:6470:18:704:-8.90244,0,-527.281 0|1:70:48,22:48:1907:22:866:-57.185,0,-150.77 0|1:62:38,24:38:1452:24:943:-66.5131,0,-112.271 dDocent_Contig_3009 26 . T C 559.946 . AB=0.508929;ABP=3.08785;AC=7;AF=0.875;AN=8;AO=239;CIGAR=1X;DP=425;DPB=425;DPRA=0;EPP=521.992;EPPR=404.733;GTI=0;LEN=1;MEANALT=1.25;MQM=8.24268;MQMR=7.17838;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=9516;QR=7436;RO=185;RPL=0;RPP=521.992;RPPR=404.733;RPR=239;RUN=1;SAF=239;SAP=521.992;SAR=0;SRF=185;SRP=404.733;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:116:53,63:53:2094:63:2527:-11.7273,-1.49126,0 0/1:112:55,57:55:2218:57:2244:-10.2705,0,-0.99605 1/1:138:57,81:57:2318:81:3231:-20.3115,-2.82303,0 1/1:59:20,38:20:806:38:1514:-14.0381,-4.8628,0 dDocent_Contig_3010 107 . N A 67.4638 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=4.60517;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=71;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:71:-6.74206,-0.60206,0 dDocent_Contig_3011 61 . G C 7266.76 . AB=0.522293;ABP=5.04346;AC=4;AF=0.5;AN=8;AO=246;CIGAR=1X;DP=471;DPB=471;DPRA=0;EPP=537.193;EPPR=489.42;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=9696;QR=8769;RO=224;RPL=246;RPP=537.193;RPPR=489.42;RPR=0;RUN=1;SAF=246;SAP=537.193;SAR=0;SRF=224;SRP=489.42;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:154:86,67:86:3347:67:2623:-190.057,0,-255.149 0/1:139:61,78:61:2368:78:3074:-234.905,0,-171.437 0/1:99:51,48:51:2011:48:1893:-140.768,0,-151.381 0/1:79:26,53:26:1043:53:2106:-165.936,0,-70.3764 dDocent_Contig_3012 17 . A G 941.594 . AB=0.117647;ABP=24.5973;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X1M1X;DP=100;DPB=100;DPRA=0;EPP=7.35324;EPPR=141.985;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=75;QR=2523;RO=64;RPL=0;RPP=7.35324;RPPR=141.985;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=64;SRP=141.985;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:28:16,0,12:16:632:0,12:0,479:-35.0322,-39.8487,-91.8524,0,-52.4007,-48.7883 0|0:33:22,0,11:22:871:0,11:0,432:-29.298,-35.9207,-107.61,0,-72.0827,-68.7714 0|0:22:11,0,11:11:422:0,11:0,434:-32.7906,-36.102,-70.7302,0,-35.0169,-31.7056 0|1:17:15,2,0:15:598:2,0:75,0:-2.00208,0,-49.0423,-6.51753,-49.6443,-55.7844 dDocent_Contig_3013 119 . T G 1877.78 . AB=0.555556;ABP=4.45795;AC=5;AF=0.625;AN=8;AO=62;CIGAR=1X;DP=86;DPB=86;DPRA=0;EPP=137.642;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2292;QR=895;RO=24;RPL=0;RPP=137.642;RPPR=55.1256;RPR=62;RUN=1;SAF=0;SAP=137.642;SAR=62;SRF=0;SRP=55.1256;SRR=24;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:6,7:6:211:7:267:-20.4792,0,-15.4175 0/1:25:12,13:12:455:13:498:-37.6404,0,-33.7729 1/1:32:0,32:0:0:32:1158:-104.51,-9.63296,0 0/1:16:6,10:6:229:10:369:-28.7397,0,-16.159 dDocent_Contig_3014 19 . T C 17582.5 . AB=0.210843;ABP=485.234;AC=3;AF=0.375;AN=8;AO=140;CIGAR=9M1X1M1X10M;DP=664;DPB=626.909;DPRA=0;EPP=307.016;EPPR=68.1545;GTI=0;LEN=1;MEANALT=5.5;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5521;QR=1173;RO=30;RPL=0;RPP=307.016;RPPR=68.1545;RPR=140;RUN=1;SAF=140;SAP=307.016;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:201:0,0,66,131:0:0:0,66,131:0,2600,5005:-624.603,-624.603,-624.603,-410.711,-410.711,-390.843,-213.957,-213.957,0,-174.522 1|0:194:22,0,41,127:22:859:0,41,127:0,1610,4821:-450.485,-457.108,-527.722,-324.705,-395.32,-382.977,-61.799,-132.416,0,-94.1848 1|0:149:8,16,22,99:8:314:16,22,99:641,884,3738:-350.966,-300.564,-321.573,-280.525,-253.54,-299.728,-47.0272,-20.0407,0,-43.0493 0|0:120:0,22,11,85:0:0:22,11,85:857,427,3251:-337.186,-266.763,-260.14,-302.106,-231.683,-298.794,-70.4236,0,-35.3441,-44.836 dDocent_Contig_3015 52 . T G 211.057 . AB=0.169014;ABP=70.5706;AC=2;AF=0.25;AN=8;AO=15;CIGAR=1X;DP=138;DPB=138;DPRA=0;EPP=35.5824;EPPR=270.101;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=0.99187;PAO=0;PQA=0;PQR=0;PRO=0;QA=610;QR=4934;RO=123;RPL=15;RPP=35.5824;RPPR=270.101;RPR=0;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=123;SRP=270.101;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:52:43,9:43:1721:9:368:-17.8318,0,-139.455 0/0:23:22,1:22:880:1:41:0,-2.82912,-75.4118 0/0:44:42,2:42:1684:2:81:0,-5.55959,-144.1 0/1:19:16,3:16:649:3:120:-5.46774,0,-53.0238 dDocent_Contig_3016 1 . N G 377.3 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=10;CIGAR=1X;DP=10;DPB=10;DPRA=0;EPP=24.725;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=401;QR=0;RO=0;RPL=0;RPP=24.725;RPPR=0;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:120:-11.1877,-0.90309,0 1/1:6:0,6:0:0:6:241:-22.0658,-1.80618,0 1/1:1:0,1:0:0:1:40:-3.99568,-0.30103,0 ./.:.:.:.:.:.:.:. dDocent_Contig_3018 15 . T G 10510.9 . AB=0.793269;ABP=313.781;AC=4;AF=0.5;AN=8;AO=330;CIGAR=1X;DP=416;DPB=416;DPRA=0;EPP=719.596;EPPR=189.757;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=13123;QR=3449;RO=86;RPL=0;RPP=719.596;RPPR=189.757;RPR=330;RUN=1;SAF=330;SAP=719.596;SAR=0;SRF=86;SRP=189.757;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:128:15,113:15:598:113:4487:-365.233,0,-15.6234 0/1:115:30,85:30:1202:85:3379:-269.541,0,-73.8357 0/1:124:35,89:35:1413:89:3564:-283.46,0,-90.0922 0/1:49:6,43:6:236:43:1693:-137.847,0,-6.86039 dDocent_Contig_3020 51 . T C 117.301 . AB=0.241379;ABP=19.8579;AC=3;AF=0.375;AN=8;AO=7;CIGAR=1X;DP=34;DPB=34;DPRA=1.93333;EPP=18.2106;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=254;QR=1080;RO=27;RPL=7;RPP=18.2106;RPPR=61.6401;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:10,5:10:403:5:175:-11.5681,0,-32.1141 0/1:7:6,1:6:238:1:41:-1.98736,0,-19.6846 0/1:7:6,1:6:239:1:38:-1.69006,0,-19.7772 0/0:5:5,0:5:200:0:0:0,-1.50515,-18.379 dDocent_Contig_3021 108 . G A 94.2866 . AB=0.18;ABP=47.4821;AC=2;AF=0.25;AN=8;AO=9;CIGAR=1X;DP=133;DPB=133;DPRA=0.60241;EPP=22.5536;EPPR=272.273;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=289;QR=4092;RO=124;RPL=0;RPP=22.5536;RPPR=272.273;RPR=9;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=272.273;SRR=124;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:29,7:29:962:7:219:-9.1796,0,-76.041 0/0:55:55,0:55:1810:0:0:0,-16.5566,-163.167 0/0:28:28,0:28:916:0:0:0,-8.42884,-82.7415 0/1:14:12,2:12:404:2:70:-2.43298,0,-32.4686 dDocent_Contig_3022 22 . G A 32083.2 . AB=0.457429;ABP=21.8684;AC=8;AF=1;AN=8;AO=548;CIGAR=3X;DP=1198;DPB=1198;DPRA=0;EPP=1192.98;EPPR=224.5;GTI=0;LEN=1;MEANALT=2.25;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=1.11022e-16;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=21829;QR=3934;RO=102;RPL=0;RPP=1192.98;RPPR=224.5;RPR=548;RUN=1;SAF=548;SAP=1192.98;SAR=0;SRF=102;SRP=224.5;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:330:17,157,156:17:639:157,156:6089,6234:-956.213,-461.14,-466.221,-447.864,0,-453.246 1|1:357:36,165,155:36:1410:165,155:6525,6163:-917.578,-391.47,-457.732,-421.019,0,-490.292 1|1:303:25,140,138:25:967:140,138:5534,5520:-823.127,-375.287,-412.567,-375.95,0,-413.833 1|1:208:24,85,99:24:918:85,99:3366,3912:-516.388,-246.583,-296.314,-201.722,0,-247.238 dDocent_Contig_3023 9 . G C 9843.59 . AB=0.896907;ABP=135.739;AC=7;AF=0.875;AN=8;AO=296;CIGAR=1X2M;DP=315;DPB=315;DPRA=0;EPP=645.766;EPPR=31.2394;GTI=0;LEN=1;MEANALT=1.75;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=11402;QR=503;RO=13;RPL=0;RPP=645.766;RPPR=31.2394;RPR=296;RUN=1;SAF=296;SAP=645.766;SAR=0;SRF=13;SRP=31.2394;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:125:0,2,123:0:0:2,123:79,4738:-426.051,-419.55,-418.948,-37.0267,-30.1311,0 1|1:93:6,0,86:6:235:0,86:0,3343:-279.496,-281.303,-300.627,-6.43441,-25.8886,0 0|1:73:7,0,66:7:268:0,66:0,2520:-205.019,-207.126,-229.12,0,-22.3764,-2.5084 1|1:24:0,3,21:0:0:3,21:120,801:-75.978,-66.0904,-65.1874,-10.2848,0,-3.96318 dDocent_Contig_3024 23 . A G 9229.93 . AB=0.0304348;ABP=443.498;AC=4;AF=0.5;AN=8;AO=7;CIGAR=1M6I7M1X11M2X;DP=395;DPB=458.818;DPRA=0;EPP=18.2106;EPPR=68.1545;GTI=0;LEN=1;MEANALT=7;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0.5;PQA=13.5;PQR=4;PRO=0.5;QA=238;QR=1176;RO=30;RPL=0;RPP=18.2106;RPPR=68.1545;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:122:8,32,1,77:8:315:32,1,77:1111,34,2918:-301.214,-213.342,-229.626,-300.864,-236.501,-326.479,-64.38,0,-87.5478,-67.1265 1|0:108:4,41,6,50:4:152:41,6,50:1437,204,1914:-260.329,-144.633,-144.756,-244.987,-140.554,-255.646,-104.46,0,-100.381,-101.877 1|0:112:12,20,0,76:12:470:20,0,76:702,0,2802:-243.938,-190.43,-223.06,-247.55,-229.08,-286.201,-18.4452,0,-57.1054,-34.2271 1|0:53:6,20,0,27:6:239:20,0,27:759,0,1000:-122.502,-62.0738,-75.7389,-124.309,-81.7595,-143.992,-42.5201,0,-62.2045,-54.0766 dDocent_Contig_3026 68 . G C 420.42 . AB=0.272727;ABP=17.8158;AC=2;AF=0.25;AN=8;AO=9;CIGAR=1M1D4M1X1M;DP=83;DPB=80.75;DPRA=0.785714;EPP=22.5536;EPPR=144.156;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=355;QR=2472;RO=65;RPL=9;RPP=22.5536;RPPR=144.156;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=65;SRP=144.156;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:29:20,0,9:20:746:0,9:0,347:-22.8599,-28.8805,-89.9369,0,-61.4377,-58.7284 0|0:21:21,0,0:21:804:0,0:0,0:0,-6.32163,-72.6811,-6.32163,-72.6811,-72.6811 0|1:20:13,7,0:13:503:7,0:276,0:-19.1889,0,-39.5953,-23.1023,-41.7025,-64.4135 0|1:13:11,2,0:11:419:2,0:79,0:-3.58424,0,-34.1462,-6.89557,-34.7483,-41.2514 dDocent_Contig_3027 189 . C T 3007.61 . AB=0.330435;ABP=89.1705;AC=4;AF=0.5;AN=8;AO=114;CIGAR=1X;DP=345;DPB=345;DPRA=0;EPP=250.558;EPPR=504.62;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4539;QR=9217;RO=231;RPL=114;RPP=250.558;RPPR=504.62;RPR=0;RUN=1;SAF=0;SAP=250.558;SAR=114;SRF=0;SRP=504.62;SRR=231;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:118:79,39:79:3152:39:1555:-104.662,0,-248.227 0/1:113:95,18:95:3787:18:706:-29.8433,0,-306.819 0/1:76:36,40:36:1434:40:1618:-122.969,0,-106.431 0/1:38:21,17:21:844:17:660:-48.2766,0,-64.834 dDocent_Contig_3028 7 . C A 85.351 . AB=0.75;ABP=5.18177;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X1M1X2M1X1M5I2M;DP=20;DPB=21.6667;DPRA=0.75;EPP=9.52472;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=4.33681e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=116;QR=648;RO=17;RPL=0;RPP=9.52472;RPPR=39.9253;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:8:8,0:8:303:0:0:0,-2.40824,-27.628 0|1:4:1,3:1:34:3:116:-9.61287,0,-2.19479 0|0:7:7,0:7:272:0:0:0,-2.10721,-24.8468 0|0:1:1,0:1:39:0:0:0,-0.30103,-3.89656 dDocent_Contig_3029 38 . A G 12580.7 . AB=0.0680272;ABP=479.523;AC=0;AF=0;AN=8;AO=20;CIGAR=2X3M;DP=499;DPB=499;DPRA=0;EPP=46.4397;EPPR=113.755;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=786;QR=1958;RO=51;RPL=0;RPP=46.4397;RPPR=113.755;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:158:30,16,15,97:30:1162:16,15,97:617,586,3844:-307.352,-265.722,-356.355,-268.209,-312.997,-359.143,0,-44.7894,-47.2752,-66.2509 0|0:136:0,13,0,123:0:0:13,0,123:512,0,4863:-442.658,-400.537,-396.624,-442.658,-400.537,-442.658,-42.5144,0,-42.5144,-5.48771 0|0:136:13,17,5,101:13:491:17,5,101:674,200,4032:-343.409,-291.844,-326.963,-330.847,-315.605,-369.579,-15.2537,0,-39.0083,-25.0812 0|0:69:8,15,0,46:8:305:15,0,46:588,0,1808:-169.638,-123.698,-144.198,-172.046,-148.713,-197.062,-23.342,0,-48.3553,-34.5079 dDocent_Contig_3030 1 . N G 621.668 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=19;CIGAR=1X;DP=19;DPB=19;DPRA=0;EPP=22.325;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=674;QR=0;RO=0;RPL=0;RPP=44.2683;RPPR=0;RPR=19;RUN=1;SAF=3;SAP=22.325;SAR=16;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:7:0,7:0:0:7:240:-21.9352,-2.10721,0 ./.:.:.:.:.:.:.:. 1/1:8:0,8:0:0:8:294:-26.8091,-2.40824,0 1/1:4:0,4:0:0:4:140:-12.9449,-1.20412,0 dDocent_Contig_3031 169 . N G 479.568 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=14;CIGAR=1X;DP=14;DPB=14;DPRA=0;EPP=5.49198;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=0.357143;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=516;QR=0;RO=0;RPL=14;RPP=33.4109;RPPR=0;RPR=0;RUN=1;SAF=5;SAP=5.49198;SAR=9;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:6:0,6:0:0:6:228:-20.8829,-1.80618,0 1/1:3:0,3:0:0:3:90:-8.39828,-0.90309,0 1/1:5:0,5:0:0:5:198:-18.1975,-1.50515,0 ./.:.:.:.:.:.:.:. dDocent_Contig_3032 107 . N A 35.2841 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=33;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:1:0,1:0:0:1:15:-1.49999,-0.30103,0 1/1:2:0,2:0:0:2:18:-1.70999,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_3035 13 . A G 3483.37 . AB=0.466667;ABP=4.02365;AC=6;AF=0.75;AN=8;AO=115;CIGAR=1X3M;DP=176;DPB=176;DPRA=0;EPP=252.73;EPPR=122.441;GTI=0;LEN=1;MEANALT=1.75;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4241;QR=2059;RO=55;RPL=0;RPP=252.73;RPPR=122.441;RPR=115;RUN=1;SAF=115;SAP=252.73;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:38:0,2,36:0:0:2,36:74,1346:-121.06,-115.007,-114.405,-10.8371,-4.41326,0 0|1:64:41,1,22:41:1555:1,22:38,816:-54.4182,-63.6435,-190.853,0,-124.387,-120.881 0|1:41:14,0,27:14:504:0,27:0,964:-74.7206,-78.935,-120.055,0,-41.4785,-33.3507 1|1:33:0,3,30:0:0:3,30:94,1115:-100.332,-92.7821,-91.879,-9.0309,-1.16278,0 dDocent_Contig_3036 1 . N G 834.571 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=23;CIGAR=1X;DP=23;DPB=23;DPRA=0;EPP=52.9542;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=904;QR=0;RO=0;RPL=0;RPP=52.9542;RPPR=0;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:11:0,11:0:0:11:425:-38.5963,-3.31133,0 1/1:4:0,4:0:0:4:162:-14.967,-1.20412,0 1/1:4:0,4:0:0:4:156:-14.4157,-1.20412,0 1/1:4:0,4:0:0:4:161:-14.8753,-1.20412,0 dDocent_Contig_3037 17 . G C 4800.11 . AB=0.489489;ABP=3.32983;AC=4;AF=0.5;AN=8;AO=163;CIGAR=2X;DP=333;DPB=333;DPRA=0;EPP=356.96;EPPR=369.989;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.988166;PAO=0;PQA=0;PQR=0;PRO=0;QA=6490;QR=6528;RO=169;RPL=0;RPP=356.96;RPPR=369.989;RPR=163;RUN=1;SAF=163;SAP=356.96;SAR=0;SRF=169;SRP=369.989;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:118:41,77:41:1585:77:3057:-239.701,0,-107.383 0|1:100:70,30:70:2670:30:1201:-78.2618,0,-210.363 0|1:63:38,24:38:1483:24:953:-67.314,0,-114.977 0|1:52:20,32:20:790:32:1279:-99.724,0,-55.7704 dDocent_Contig_3038 15 . G A 3120.38 . AB=0.46696;ABP=5.16264;AC=4;AF=0.5;AN=8;AO=106;CIGAR=1X;DP=227;DPB=227;DPRA=0;EPP=233.186;EPPR=265.758;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.915094;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4269;QR=4802;RO=121;RPL=0;RPP=233.186;RPPR=265.758;RPR=106;RUN=1;SAF=106;SAP=233.186;SAR=0;SRF=121;SRP=265.758;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:97:59,38:59:2341:38:1513:-107.211,0,-181.653 0/1:46:27,19:27:1068:19:770:-55.7727,0,-82.5617 0/1:49:23,26:23:920:26:1057:-80.6669,0,-68.3541 0/1:35:12,23:12:473:23:929:-73.377,0,-32.3822 dDocent_Contig_3039 22 . C G 13373.4 . AB=0.491342;ABP=3.61192;AC=4;AF=0.5;AN=8;AO=454;CIGAR=1X3M;DP=924;DPB=924;DPRA=0;EPP=988.859;EPPR=973.658;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=17940;QR=17762;RO=447;RPL=0;RPP=988.859;RPPR=973.658;RPR=454;RUN=1;SAF=454;SAP=988.859;SAR=0;SRF=447;SRP=973.658;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:272:138,20,113:138:5473:20,113:786,4514:-330.236,-307.13,-751.598,0,-385.845,-416.477 0|1:301:150,0,151:150:5954:0,151:0,5963:-445.847,-491.002,-981.12,0,-490.514,-445.058 0|1:211:86,0,123:86:3437:0,123:0,4796:-368.24,-394.129,-677.233,0,-283.095,-246.068 0|1:140:73,0,67:73:2898:0,67:0,2667:-198.004,-219.979,-458.546,0,-238.964,-218.795 dDocent_Contig_3040 128 . C G 1000.13 . AB=0.465116;ABP=3.91929;AC=2;AF=0.25;AN=8;AO=40;CIGAR=1X;DP=165;DPB=165;DPRA=1.08861;EPP=89.8692;EPPR=274.444;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1416;QR=4228;RO=125;RPL=0;RPP=89.8692;RPPR=274.444;RPR=40;RUN=1;SAF=0;SAP=89.8692;SAR=40;SRF=0;SRP=274.444;SRR=125;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:67:32,35:32:1066:35:1237:-91.4659,0,-76.0674 0/0:24:24,0:24:822:0:0:0,-7.22472,-74.2916 0/0:55:55,0:55:1897:0:0:0,-16.5566,-171.005 0/1:19:14,5:14:443:5:179:-10.7408,0,-34.4518 dDocent_Contig_3041 1 . N G 526.374 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=14;CIGAR=1X;DP=14;DPB=14;DPRA=0;EPP=33.4109;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=561;QR=0;RO=0;RPL=0;RPP=33.4109;RPPR=0;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:81:-7.68573,-0.60206,0 1/1:5:0,5:0:0:5:202:-18.5621,-1.50515,0 1/1:5:0,5:0:0:5:199:-18.2874,-1.50515,0 1/1:2:0,2:0:0:2:79:-7.49763,-0.60206,0 dDocent_Contig_3042 65 . G A 10306.6 . AB=0.742138;ABP=83.983;AC=6;AF=0.75;AN=8;AO=321;CIGAR=1X;DP=371;DPB=371;DPRA=0;EPP=700.053;EPPR=109.412;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=12315;QR=1907;RO=49;RPL=321;RPP=700.053;RPPR=109.412;RPR=0;RUN=1;SAF=321;SAP=700.053;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:70:0,70:0:0:70:2619:-235.883,-21.0721,0 1/1:142:8,133:8:309:133:5097:-430.552,-14.3873,0 0/1:91:23,68:23:903:68:2652:-211.444,0,-54.1888 0/1:68:18,50:18:695:50:1947:-154.973,0,-42.4045 dDocent_Contig_3045 12 . T C 2812.6 . AB=0.394422;ABP=27.3118;AC=4;AF=0.5;AN=8;AO=99;CIGAR=1X;DP=251;DPB=251;DPRA=0;EPP=217.986;EPPR=333.074;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=0.993421;PAO=0;PQA=0;PQR=0;PRO=0;QA=4007;QR=5897;RO=152;RPL=0;RPP=217.986;RPPR=333.074;RPR=99;RUN=1;SAF=99;SAP=217.986;SAR=0;SRF=152;SRP=333.074;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:99:76,23:76:2964:23:935:-54.6485,0,-237.079 0/1:81:41,40:41:1585:40:1615:-121.195,0,-118.522 0/1:40:11,29:11:421:29:1170:-93.5332,0,-26.1984 0/1:31:24,7:24:927:7:287:-16.8733,0,-74.4078 dDocent_Contig_3046 7 . C T 479.779 . AB=0.175758;ABP=153.684;AC=3;AF=0.375;AN=8;AO=31;CIGAR=1X;DP=218;DPB=218;DPRA=0;EPP=70.3259;EPPR=409.076;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.516129;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1186;QR=7191;RO=187;RPL=0;RPP=70.3259;RPPR=409.076;RPR=31;RUN=1;SAF=31;SAP=70.3259;SAR=0;SRF=187;SRP=409.076;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:67:61,6:61:2329:6:231:-0.9889,0,-189.655 0/0:53:51,2:51:1970:2:78:0,-8.55112,-170.135 0/1:56:42,14:42:1613:14:528:-31.0036,0,-128.579 0/1:42:33,9:33:1279:9:349:-19.1276,0,-102.757 dDocent_Contig_3047 7 . C T 287.659 . AB=0.217391;ABP=50.8771;AC=3;AF=0.375;AN=8;AO=16;CIGAR=1X;DP=97;DPB=97;DPRA=0;EPP=37.7539;EPPR=178.9;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.125;PAIREDR=0.987654;PAO=0;PQA=0;PQR=0;PRO=0;QA=617;QR=3079;RO=81;RPL=0;RPP=37.7539;RPPR=178.9;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=81;SRP=178.9;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:28:27,1:27:1034:1:39:0,-4.53228,-89.4697 0/1:23:18,5:18:669:5:195:-11.0005,0,-53.6125 0/1:27:20,7:20:772:7:270:-16.5377,0,-61.6803 0/1:19:16,3:16:604:3:113:-4.8194,0,-48.9734 dDocent_Contig_3048 96 . C G 244.966 . AB=0.150259;ABP=208.063;AC=3;AF=0.375;AN=8;AO=31;CIGAR=1X;DP=224;DPB=224;DPRA=0;EPP=70.3259;EPPR=422.104;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1016;QR=6848;RO=193;RPL=31;RPP=70.3259;RPPR=422.104;RPR=0;RUN=1;SAF=31;SAP=70.3259;SAR=0;SRF=193;SRP=422.104;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:68:59,9:59:2101:9:310:-7.7643,0,-168.89 0/1:72:59,13:59:2091:13:406:-15.1653,0,-166.785 0/1:53:46,7:46:1637:7:231:-5.15875,0,-131.664 0/0:31:29,2:29:1019:2:69:0,-2.77927,-85.469 dDocent_Contig_3049 16 . A G 4277.97 . AB=0.102267;ABP=2730.47;AC=0;AF=0;AN=8;AO=203;CIGAR=1X2M1X;DP=1985;DPB=1985;DPRA=0;EPP=443.819;EPPR=2802.04;GTI=0;LEN=1;MEANALT=9;MQM=51.5813;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=0.615764;PAIREDR=0.982157;PAO=0;PQA=0;PQR=0;PRO=0;QA=7795;QR=50450;RO=1289;RPL=0;RPP=443.819;RPPR=2802.04;RPR=203;RUN=1;SAF=203;SAP=443.819;SAR=0;SRF=1289;SRP=2802.04;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:526:354,51,68,15:354:13831:51,68,15:1960,2678,600:-113.74,-65.7591,-1187.41,0,-982.467,-1116.54,-170.882,-1153.34,-1087.59,-1303.37 0|0:514:328,53,62,31:328:12826:53,62,31:2010,2457,1237:-103.485,-47.2139,-1085.72,0,-899.455,-1035.81,-100.354,-999.806,-952.603,-1145.49 0|0:635:397,77,77,11:397:15552:77,77,11:2999,3018,432:-128.649,-12.2816,-1267.89,0,-1042.91,-1255.61,-212.63,-1255.54,-1243.26,-1488.11 0|0:310:210,22,46,10:210:8241:22,46,10:826,1824,397:-86.9132,-85.091,-756.203,0,-612.702,-663.898,-117.448,-730.145,-645.065,-792.179 dDocent_Contig_3050 159 . G A 56.7006 . AB=0.115385;ABP=103.232;AC=2;AF=0.25;AN=8;AO=11;CIGAR=1X;DP=170;DPB=170;DPRA=0.847222;EPP=26.8965;EPPR=348.274;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=415;QR=6255;RO=159;RPL=11;RPP=26.8965;RPPR=348.274;RPR=0;RUN=1;SAF=0;SAP=26.8965;SAR=11;SRF=0;SRP=348.274;SRR=159;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:62:55,7:55:2150:7:267:-5.72889,0,-175.022 0/0:48:48,0:48:1915:0:0:0,-14.4494,-172.555 0/0:44:42,2:42:1650:2:75:0,-6.12522,-141.609 0/1:16:14,2:14:540:2:73:-2.11462,0,-44.1116 dDocent_Contig_3051 26 . T A 5749.63 . AB=0.523288;ABP=4.72963;AC=4;AF=0.5;AN=8;AO=191;CIGAR=1X;DP=365;DPB=365;DPRA=0;EPP=417.762;EPPR=378.675;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7657;QR=6924;RO=173;RPL=0;RPP=417.762;RPPR=378.675;RPR=191;RUN=1;SAF=191;SAP=417.762;SAR=0;SRF=173;SRP=378.675;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:110:57,53:57:2293:53:2118:-157.687,0,-173.41 0/1:114:39,75:39:1560:75:3010:-236.672,0,-106.32 0/1:88:53,35:53:2122:35:1409:-100.574,0,-164.669 0/1:53:24,28:24:949:28:1120:-85.0196,0,-69.6497 dDocent_Contig_3052 13 . T G 3453.35 . AB=0.48374;ABP=3.57524;AC=4;AF=0.5;AN=8;AO=119;CIGAR=1X;DP=246;DPB=246;DPRA=0;EPP=261.416;EPPR=278.787;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.983193;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4703;QR=5112;RO=127;RPL=0;RPP=261.416;RPPR=278.787;RPR=119;RUN=1;SAF=119;SAP=261.416;SAR=0;SRF=127;SRP=278.787;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:92:44,48:44:1768:48:1892:-142.794,0,-131.64 0/1:74:43,31:43:1734:31:1250:-90.4912,0,-133.999 0/1:42:25,17:25:1001:17:668:-47.8059,0,-77.7448 0/1:38:15,23:15:609:23:893:-69.2336,0,-43.7084 dDocent_Contig_3053 107 . N C 398.858 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=13;CIGAR=1X;DP=13;DPB=13;DPRA=0;EPP=31.2394;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=48.3846;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=430;QR=0;RO=0;RPL=0;RPP=31.2394;RPPR=0;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:7:0,7:0:0:7:232:-21.104,-2.10721,0 1/1:3:0,3:0:0:3:102:-9.36903,-0.90309,0 ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:96:-8.93411,-0.90309,0 dDocent_Contig_3054 47 . C T 173.61 . AB=0.243243;ABP=24.1968;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X;DP=106;DPB=106;DPRA=1.6087;EPP=22.5536;EPPR=213.643;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=325;QR=3446;RO=97;RPL=0;RPP=22.5536;RPPR=213.643;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=97;SRP=213.643;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:26:26,0:26:941:0:0:0,-7.82678,-85.0068 0/1:37:28,9:28:986:9:325:-18.4579,0,-77.9062 0/0:23:23,0:23:826:0:0:0,-6.92369,-74.6612 0/0:20:20,0:20:693:0:0:0,-6.0206,-62.6882 dDocent_Contig_3055 10 . C T 203.227 . AB=0.111111;ABP=298.572;AC=2;AF=0.25;AN=8;AO=31;CIGAR=1X;DP=467;DPB=467;DPRA=0;EPP=70.3259;EPPR=949.772;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.990826;PAO=0;PQA=0;PQR=0;PRO=0;QA=1238;QR=17574;RO=436;RPL=0;RPP=70.3259;RPPR=949.772;RPR=31;RUN=1;SAF=31;SAP=70.3259;SAR=0;SRF=436;SRP=949.772;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:179:163,16:163:6606:16:635:-3.59982,0,-540.318 0/0:126:121,5:121:4859:5:202:0,-19.3683,-418.617 0/0:116:115,1:115:4619:1:41:0,-30.8249,-411.522 0/1:46:37,9:37:1490:9:360:-18.916,0,-120.492 dDocent_Contig_3056 26 . A G 36.1768 . AB=0.106383;ABP=66.2602;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=190;DPB=190;DPRA=1.77778;EPP=18.2106;EPPR=400.39;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.972678;PAO=0;PQA=0;PQR=0;PRO=0;QA=280;QR=7249;RO=183;RPL=0;RPP=18.2106;RPPR=400.39;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=183;SRP=400.39;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:47:42,5:42:1690:5:202:-4.41346,0,-138.176 0/0:45:44,1:44:1747:1:40:0,-9.55067,-153.459 0/0:68:67,1:67:2625:1:38:0,-16.6728,-232.579 0/0:30:30,0:30:1187:0:0:0,-9.0309,-107.106 dDocent_Contig_3057 33 . T C 679.037 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=19;CIGAR=1X;DP=19;DPB=19;DPRA=0;EPP=44.2683;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=55.1053;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=764;QR=0;RO=0;RPL=0;RPP=44.2683;RPPR=0;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:16:0,16:0:0:16:641:-56.1517,-4.81648,0 ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:123:-11.4498,-0.90309,0 dDocent_Contig_3058 7 . A C 8157.72 . AB=0.344156;ABP=197.935;AC=4;AF=0.5;AN=8;AO=318;CIGAR=1X;DP=924;DPB=924;DPRA=0;EPP=693.539;EPPR=1318.92;GTI=0;LEN=1;MEANALT=1;MQM=59.9151;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.996855;PAIREDR=0.99835;PAO=0;PQA=0;PQR=0;PRO=0;QA=12204;QR=23206;RO=606;RPL=0;RPP=693.539;RPPR=1318.92;RPR=318;RUN=1;SAF=318;SAP=693.539;SAR=0;SRF=606;SRP=1318.92;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:337:214,123:214:8181:123:4716:-322.944,0,-634.632 0/1:279:180,99:180:6918:99:3807:-258.749,0,-538.509 0/1:193:127,66:127:4848:66:2540:-170.7,0,-378.254 0/1:115:85,30:85:3259:30:1141:-68.3701,0,-258.84 dDocent_Contig_3059 113 . G A 198.096 . AB=0.3125;ABP=12.7819;AC=2;AF=0.25;AN=8;AO=10;CIGAR=1X;DP=79;DPB=79;DPRA=0.680851;EPP=24.725;EPPR=152.842;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=344;QR=2299;RO=69;RPL=0;RPP=24.725;RPPR=152.842;RPR=10;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=152.842;SRR=69;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:15,7:15:503:7:241:-15.4038,0,-38.9682 0/1:10:7,3:7:228:3:103:-6.59967,0,-17.8283 0/0:26:26,0:26:855:0:0:0,-7.82678,-77.2515 0/0:21:21,0:21:713:0:0:0,-6.32163,-64.4856 dDocent_Contig_3060 70 . C T 723.156 . AB=0.0769231;ABP=83.8559;AC=0;AF=0;AN=8;AO=4;CIGAR=1M2I1M1X;DP=80;DPB=103.333;DPRA=2.36364;EPP=11.6962;EPPR=100.727;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=154;QR=1690;RO=45;RPL=4;RPP=11.6962;RPPR=100.727;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:25:11,3,11:11:414:3,11:115,362:-25.9021,-19.7631,-52.8061,0,-24.4768,-30.6057 0|0:27:15,1,11:15:565:1,11:39,403:-28.4012,-29.7088,-75.7123,0,-43.0795,-42.9748 0|0:17:9,0,8:9:334:0,8:0,293:-21.6039,-24.3132,-51.6457,0,-27.7008,-25.2926 0|0:11:10,0,1:10:377:0,1:0,18:0,-3.0103,-34.085,-1.51136,-32.7839,-32.4829 dDocent_Contig_3061 99 . N A 1768.07 . AB=0.355932;ABP=13.6468;AC=8;AF=1;AN=8;AO=22;CIGAR=2X;DP=67;DPB=93.5;DPRA=0;EPP=50.7827;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=0;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0;PAO=7;PQA=213;PQR=0;PRO=0;QA=723;QR=0;RO=0;RPL=22;RPP=50.7827;RPPR=0;RPR=0;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:17:0,2,15:0:0:2,15:67,490:-44.9966,-39.57,-38.9679,-5.42689,0,-0.911444 1|1:34:0,29,5:0:0:29,5:969,173:-92.5199,-14.064,-5.33415,-78.4592,0,-76.954 1|1:8:0,7,1:0:0:7,1:225,25:-20.2436,-2.10721,0,-18.3,-0.169066,-17.999 1|1:8:0,7,1:0:0:7,1:230,35:-21.4386,-2.84991,-0.742702,-18.5896,0,-18.2886 dDocent_Contig_3064 21 . T C 54204 . AB=0.657413;ABP=390.631;AC=4;AF=0.5;AN=8;AO=1184;CIGAR=2X;DP=1801;DPB=1801;DPRA=0;EPP=2574.03;EPPR=111.584;GTI=0;LEN=1;MEANALT=4;MQM=59.9189;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.991554;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=47078;QR=2015;RO=50;RPL=0;RPP=2574.03;RPPR=111.584;RPR=1184;RUN=1;SAF=1184;SAP=2574.03;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:621:19,411,177:19:770:411,177:16320,7081:-1857.39,-519.715,-459.488,-1279.9,0,-1290.11 1|0:439:21,272,136:21:840:272,136:10777,5458:-1260.92,-380.511,-367.824,-817.54,0,-845.794 1|0:475:5,334,127:5:203:334,127:13300,5056:-1492.98,-399.54,-315.738,-1078.2,0,-1056.71 1|0:266:5,167,86:5:202:167,86:6681,3424:-814.101,-265.272,-231.653,-533.68,0,-524.444 dDocent_Contig_3065 63 . C G 114.115 . AB=0.230769;ABP=19.3799;AC=2;AF=0.25;AN=8;AO=6;CIGAR=1X;DP=41;DPB=41;DPRA=1.73333;EPP=16.0391;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.7714;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=225;QR=1358;RO=35;RPL=6;RPP=16.0391;RPPR=79.0118;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:9:9,0:9:353:0:0:0,-2.70927,-32.1294 0/1:15:10,5:10:404:5:185:-12.4878,0,-32.2044 0/1:11:10,1:10:369:1:40:-0.684349,0,-30.2296 0/0:6:6,0:6:232:0:0:0,-1.80618,-21.2464 dDocent_Contig_3066 192 . A G 61.9044 . AB=0.117647;ABP=67.7713;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=79;DPB=79;DPRA=5.46429;EPP=16.0391;EPPR=161.528;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=244;QR=2893;RO=73;RPL=6;RPP=16.0391;RPPR=161.528;RPR=0;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=161.528;SRR=73;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:51:45,6:45:1782:6:244:-6.9863,0,-145.24 0/0:9:9,0:9:358:0:0:0,-2.70927,-32.5796 0/0:8:8,0:8:317:0:0:0,-2.40824,-28.8936 0/0:11:11,0:11:436:0:0:0,-3.31133,-39.5905 dDocent_Contig_3067 57 . G A 9985.77 . AB=0.821782;ABP=366.356;AC=4;AF=0.5;AN=8;AO=332;CIGAR=1X3M;DP=404;DPB=404;DPRA=0;EPP=723.939;EPPR=120.27;GTI=0;LEN=1;MEANALT=1.75;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=12447;QR=2000;RO=54;RPL=332;RPP=723.939;RPPR=120.27;RPR=0;RUN=1;SAF=332;SAP=723.939;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:109:12,8,89:12:438:8,89:297,3281:-264.675,-243.982,-277.357,0,-11.4723,-8.98847 0|1:91:17,0,74:17:630:0,74:0,2802:-224.969,-230.086,-281.63,0,-51.9156,-29.6393 0|1:115:13,0,101:13:486:0,101:0,3801:-307.504,-311.417,-351.215,0,-39.7927,-9.38869 0|1:89:12,9,68:12:446:9,68:334,2563:-206.419,-182.701,-216.493,0,-9.17182,-16.0328 dDocent_Contig_3068 23 . G T 559.918 . AB=0.219298;ABP=81.0309;AC=1;AF=0.125;AN=8;AO=25;CIGAR=1X;DP=318;DPB=318;DPRA=1.67647;EPP=57.2971;EPPR=639.252;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1009;QR=11630;RO=293;RPL=0;RPP=57.2971;RPPR=639.252;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=293;SRP=639.252;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:114:89,25:89:3537:25:1009:-56.7877,0,-284.05 0/0:102:102,0:102:4044:0:0:0,-30.7051,-363.934 0/0:65:65,0:65:2584:0:0:0,-19.5669,-232.697 0/0:37:37,0:37:1465:0:0:0,-11.1381,-132.091 dDocent_Contig_3070 75 . C A 57.5355 . AB=0.162162;ABP=39.6906;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=125;DPB=125;DPRA=1.26136;EPP=16.0391;EPPR=261.416;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=193;QR=4747;RO=119;RPL=6;RPP=16.0391;RPPR=261.416;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=119;SRP=261.416;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:37:31,6:31:1223:6:193:-6.54943,0,-99.1952 0/0:31:31,0:31:1248:0:0:0,-9.33193,-112.59 0/0:47:47,0:47:1870:0:0:0,-14.1484,-168.508 0/0:10:10,0:10:406:0:0:0,-3.0103,-36.9 dDocent_Contig_3072 118 . C T 4056.09 . AB=0.676724;ABP=65.9456;AC=4;AF=0.5;AN=8;AO=157;CIGAR=1X;DP=232;DPB=232;DPRA=0;EPP=343.931;EPPR=165.871;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5325;QR=2603;RO=75;RPL=0;RPP=343.931;RPPR=165.871;RPR=157;RUN=1;SAF=0;SAP=343.931;SAR=157;SRF=0;SRP=165.871;SRR=75;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:86:16,70:16:519:70:2366:-187.315,0,-21.1259 0/1:71:39,32:39:1377:32:1092:-77.2109,0,-102.854 0/1:46:15,31:15:527:31:1051:-81.0485,0,-33.9131 0/1:29:5,24:5:180:24:816:-65.0242,0,-7.82219 dDocent_Contig_3073 5 . T G 33.7435 . AB=0.131579;ABP=47.8112;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X1M1X;DP=117;DPB=117;DPRA=1.44304;EPP=13.8677;EPPR=246.215;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=0;PAIREDR=0.839286;PAO=0;PQA=0;PQR=0;PRO=0;QA=173;QR=4324;RO=112;RPL=0;RPP=13.8677;RPPR=246.215;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=112;SRP=246.215;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:38:38,0:38:1464:0:0:0,-11.4391,-132.038 0|1:38:33,5:33:1277:5:173:-4.47107,0,-103.781 0|0:27:27,0:27:1046:0:0:0,-8.12781,-94.448 0|0:14:14,0:14:537:0:0:0,-4.21442,-48.6753 dDocent_Contig_3074 85 . T C 227.769 . AB=0.282051;ABP=19.1015;AC=2;AF=0.25;AN=8;AO=11;CIGAR=1X;DP=74;DPB=74;DPRA=1.11429;EPP=26.8965;EPPR=139.813;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.2381;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.984127;PAO=0;PQA=0;PQR=0;PRO=0;QA=400;QR=2294;RO=63;RPL=11;RPP=26.8965;RPPR=139.813;RPR=0;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=63;SRP=139.813;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:20:20,0:20:729:0:0:0,-6.0206,-63.6765 0/0:15:15,0:15:552:0:0:0,-4.51545,-50.0196 0/1:26:17,9:17:608:9:327:-21.9502,0,-47.2219 0/1:13:11,2:11:405:2:73:-3.01791,0,-32.8838 dDocent_Contig_3075 105 . C T 2018.45 . AB=0.409091;ABP=17.2236;AC=4;AF=0.5;AN=8;AO=81;CIGAR=1X1M;DP=198;DPB=198;DPRA=0;EPP=178.9;EPPR=244.044;GTI=0;LEN=1;MEANALT=1.75;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.925926;PAIREDR=0.891892;PAO=0;PQA=0;PQR=0;PRO=0;QA=2934;QR=4008;RO=111;RPL=0;RPP=178.9;RPPR=244.044;RPR=81;RUN=1;SAF=0;SAP=178.9;SAR=81;SRF=0;SRP=244.044;SRR=111;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:60:38,2,19:38:1370:2,19:74,688:-44.7203,-50.1047,-161.299,0,-105.734,-106.069 0|1:44:17,3,24:17:622:3,24:109,876:-66.4537,-62.6696,-112.599,0,-41.9326,-43.6094 0|1:66:41,0,25:41:1468:0,25:0,895:-60.9984,-73.3406,-193.051,0,-120.068,-112.543 0|1:28:15,0,13:15:548:0,13:0,475:-34.6627,-39.1781,-83.956,0,-45.143,-41.2296 dDocent_Contig_3077 12 . A G 581.955 . AB=0.184358;ABP=157.913;AC=4;AF=0.5;AN=8;AO=33;CIGAR=1X;DP=179;DPB=179;DPRA=0;EPP=74.6689;EPPR=320.045;GTI=0;LEN=1;MEANALT=1;MQM=57.6667;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1286;QR=5765;RO=146;RPL=0;RPP=74.6689;RPPR=320.045;RPR=33;RUN=1;SAF=33;SAP=74.6689;SAR=0;SRF=146;SRP=320.045;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:59:48,11:48:1899:11:414:-19.7732,0,-153.361 0/1:41:34,7:34:1335:7:275:-12.758,0,-108.06 0/1:52:42,10:42:1665:10:402:-20.8772,0,-134.428 0/1:27:22,5:22:866:5:195:-9.77682,0,-70.1212 dDocent_Contig_3078 1 . N G 75.9611 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=4.60517;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=80;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:80:-7.59179,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_3079 34 . T G 3706.21 . AB=0.401198;ABP=31.3305;AC=4;AF=0.5;AN=8;AO=134;CIGAR=1X;DP=334;DPB=334;DPRA=0;EPP=293.988;EPPR=437.305;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=0.895522;PAIREDR=0.985;PAO=0;PQA=0;PQR=0;PRO=0;QA=5279;QR=7892;RO=200;RPL=0;RPP=293.988;RPPR=437.305;RPR=134;RUN=1;SAF=134;SAP=293.988;SAR=0;SRF=200;SRP=437.305;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:81:49,32:49:1967:32:1249:-88.2909,0,-152.843 0/1:119:76,43:76:3001:43:1712:-118.482,0,-234.384 0/1:86:46,40:46:1808:40:1570:-115.648,0,-137.057 0/1:48:29,19:29:1116:19:748:-53.19,0,-86.2783 dDocent_Contig_3080 26 . T A 3881.96 . AB=0.218362;ABP=558.315;AC=4;AF=0.5;AN=8;AO=176;CIGAR=1X;DP=806;DPB=806;DPRA=0;EPP=385.189;EPPR=1371.04;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.9968;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7055;QR=25151;RO=630;RPL=0;RPP=385.189;RPPR=1371.04;RPR=176;RUN=1;SAF=176;SAP=385.189;SAR=0;SRF=630;SRP=1371.04;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:287:208,79:208:8254:79:3175:-199.421,0,-655.996 0/1:196:155,41:155:6196:41:1626:-87.5709,0,-498.396 0/1:191:164,27:164:6586:27:1082:-40.173,0,-534.933 0/1:132:103,29:103:4115:29:1172:-66.0211,0,-330.578 dDocent_Contig_3081 182 . T C 214.611 . AB=0.25;ABP=22.5536;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X;DP=131;DPB=131;DPRA=1.13684;EPP=22.5536;EPPR=267.93;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=367;QR=4854;RO=122;RPL=9;RPP=22.5536;RPPR=267.93;RPR=0;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=267.93;SRR=122;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:63:63,0:63:2491:0:0:0,-18.9649,-224.326 0/1:36:27,9:27:1075:9:367:-22.558,0,-86.2026 0/0:23:23,0:23:931:0:0:0,-6.92369,-84.0922 0/0:9:9,0:9:357:0:0:0,-2.70927,-32.4909 dDocent_Contig_3082 31 . C T 268.922 . AB=0.183908;ABP=78.5126;AC=2;AF=0.25;AN=8;AO=16;CIGAR=1X;DP=174;DPB=174;DPRA=1;EPP=37.7539;EPPR=346.103;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.9494;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.962025;PAO=0;PQA=0;PQR=0;PRO=0;QA=606;QR=6345;RO=158;RPL=0;RPP=37.7539;RPPR=346.103;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=158;SRP=346.103;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:63:63,0:63:2528:0:0:0,-18.9649,-227.653 0/1:70:56,14:56:2260:14:530:-26.968,0,-182.462 0/0:24:24,0:24:959:0:0:0,-7.22472,-86.6096 0/1:17:15,2:15:598:2:76:-2.09675,0,-49.0411 dDocent_Contig_3084 26 . T G 3143.64 . AB=0.719178;ABP=63.9305;AC=4;AF=0.5;AN=8;AO=105;CIGAR=1X1M1X;DP=146;DPB=146;DPRA=0;EPP=231.015;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1.25;MQM=56.8;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=4166;QR=1558;RO=39;RPL=0;RPP=231.015;RPPR=87.6977;RPR=105;RUN=1;SAF=105;SAP=231.015;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:37:6,31,0:6:239:31,0:1214,0:-98.3868,0,-10.7451,-100.193,-20.077,-119.873 0|1:42:8,34,0:8:319:34,0:1362,0:-105.557,0,-16.4337,-107.965,-26.6687,-134.238 0|1:36:10,26,0:10:392:26,0:1035,0:-75.8075,0,-24.7974,-78.8178,-32.6242,-111.057 0|1:31:15,14,2:15:608:14,2:555,78:-39.6019,0,-45.9372,-37.7055,-43.7423,-87.2526 dDocent_Contig_3085 9 . T C 5918.04 . AB=0.584302;ABP=24.2453;AC=4;AF=0.5;AN=8;AO=201;CIGAR=1X;DP=344;DPB=344;DPRA=0;EPP=439.476;EPPR=313.531;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7771;QR=5491;RO=143;RPL=0;RPP=439.476;RPPR=313.531;RPR=201;RUN=1;SAF=201;SAP=439.476;SAR=0;SRF=143;SRP=313.531;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:131:59,72:59:2274:72:2787:-211.57,0,-165.44 0/1:48:28,20:28:1069:20:770:-55.1788,0,-82.0668 0/1:112:33,79:33:1260:79:3046:-240.583,0,-79.9713 0/1:53:23,30:23:888:30:1168:-89.4626,0,-64.2855 dDocent_Contig_3086 48 . G T 122.503 . AB=0.126316;ABP=118.235;AC=2;AF=0.25;AN=8;AO=15;CIGAR=1X;DP=161;DPB=161;DPRA=0;EPP=35.5824;EPPR=320.045;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.986301;PAO=0;PQA=0;PQR=0;PRO=0;QA=590;QR=5831;RO=146;RPL=0;RPP=35.5824;RPPR=320.045;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=146;SRP=320.045;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:55:47,8:47:1882:8:324:-12.9725,0,-153.028 0/0:34:33,1:33:1332:1:40:0,-6.23934,-116.145 0/1:40:36,4:36:1418:4:144:-1.26662,0,-115.83 0/0:32:30,2:30:1199:2:82:0,-1.85328,-100.407 dDocent_Contig_3087 19 . C T 57.2527 . AB=0.0958904;ABP=210.103;AC=2;AF=0.25;AN=8;AO=17;CIGAR=1X;DP=277;DPB=277;DPRA=7.36111;EPP=39.9253;EPPR=567.593;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.588235;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=691;QR=10386;RO=260;RPL=0;RPP=39.9253;RPPR=567.593;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=260;SRP=567.593;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:119:116,3:116:4681:3:123:0,-24.3578,-409.711 0/1:75:68,7:68:2704:7:281:-3.08472,0,-220.897 0/1:71:64,7:64:2518:7:287:-4.8321,0,-205.382 0/0:12:12,0:12:483:0:0:0,-3.61236,-43.8214 dDocent_Contig_3088 155 . A C 1455.18 . AB=0.256849;ABP=152.961;AC=4;AF=0.5;AN=8;AO=75;CIGAR=1X;DP=292;DPB=292;DPRA=0;EPP=165.871;EPPR=474.22;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2635;QR=8037;RO=217;RPL=0;RPP=165.871;RPPR=474.22;RPR=75;RUN=1;SAF=0;SAP=165.871;SAR=75;SRF=0;SRP=474.22;SRR=217;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:89:53,36:53:1917:36:1278:-88.5113,0,-145.967 0/1:84:66,18:66:2434:18:626:-31.3704,0,-193.98 0/1:63:54,9:54:2026:9:320:-10.1715,0,-163.609 0/1:56:44,12:44:1660:12:411:-20.4549,0,-132.793 dDocent_Contig_3089 47 . T A 754.89 . AB=0.283186;ABP=49.1493;AC=4;AF=0.5;AN=8;AO=32;CIGAR=1X;DP=113;DPB=113;DPRA=0;EPP=72.4974;EPPR=178.9;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.9375;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1256;QR=3207;RO=81;RPL=0;RPP=72.4974;RPPR=178.9;RPR=32;RUN=1;SAF=32;SAP=72.4974;SAR=0;SRF=81;SRP=178.9;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:39:32,7:32:1295:7:276:-13.4687,0,-105.072 0/1:39:22,17:22:858:17:668:-48.7135,0,-65.7888 0/1:24:19,5:19:731:5:195:-10.6979,0,-58.8755 0/1:11:8,3:8:323:3:117:-7.59858,0,-26.127 dDocent_Contig_3090 10 . C T 4340 . AB=0.709845;ABP=76.8291;AC=4;AF=0.5;AN=8;AO=137;CIGAR=1X;DP=193;DPB=193;DPRA=0;EPP=300.502;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.946429;PAO=0;PQA=0;PQR=0;PRO=0;QA=5512;QR=2249;RO=56;RPL=0;RPP=300.502;RPPR=124.613;RPR=137;RUN=1;SAF=137;SAP=300.502;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:72:20,52:20:785:52:2095:-167.05,0,-49.2931 0/1:53:9,44:9:366:44:1754:-142.114,0,-17.3504 0/1:34:9,25:9:363:25:1016:-81.4976,0,-22.7982 0/1:34:18,16:18:735:16:647:-48.3273,0,-56.2376 dDocent_Contig_3091 54 . G T 372.14 . AB=0.183486;ABP=97.8578;AC=3;AF=0.375;AN=8;AO=20;CIGAR=1X;DP=118;DPB=118;DPRA=4.03704;EPP=46.4397;EPPR=215.815;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=805;QR=3868;RO=98;RPL=20;RPP=46.4397;RPPR=215.815;RPR=0;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=98;SRP=215.815;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:61:53,8:53:2097:8:327:-11.4373,0,-170.548 0/1:18:9,9:9:362:9:364:-27.7058,0,-27.5251 0/1:30:27,3:27:1049:3:114:-1.59919,0,-85.6624 0/0:9:9,0:9:360:0:0:0,-2.70927,-32.7606 dDocent_Contig_3092 186 . T C 505.65 . AB=0.239583;ABP=59.5591;AC=3;AF=0.375;AN=8;AO=23;CIGAR=1X1M10D3M1X;DP=131;DPB=116.625;DPRA=0.914286;EPP=52.9542;EPPR=235.358;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=911;QR=4193;RO=107;RPL=23;RPP=52.9542;RPPR=235.358;RPR=0;RUN=1;SAF=0;SAP=52.9542;SAR=23;SRF=0;SRP=235.358;SRR=107;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:35:35,0:35:1368:0:0:0,-10.536,-123.392 0|1:61:44,16:44:1715:16:633:-38.9028,0,-136.183 0|1:21:16,5:16:630:5:198:-11.8754,0,-50.7149 0|1:14:12,2:12:480:2:80:-3.37737,0,-39.3383 dDocent_Contig_3093 19 . T C 17604.6 . AB=0.915344;ABP=286.209;AC=7;AF=0.875;AN=8;AO=524;CIGAR=1X;DP=558;DPB=558;DPRA=0;EPP=1140.86;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=20946;QR=1372;RO=34;RPL=0;RPP=1140.86;RPPR=76.8404;RPR=524;RUN=1;SAF=524;SAP=1140.86;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:194:13,181:13:525:181:7212:-601.142,-10.8028,0 0/1:189:16,173:16:645:173:6943:-567.646,0,-1.48765 1/1:115:2,113:2:79:113:4529:-400.034,-27.1208,0 1/1:60:3,57:3:123:57:2262:-192.286,-6.59701,0 dDocent_Contig_3094 50 . T A 99.1132 . AB=0.192308;ABP=24.391;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=150;DPB=150;DPRA=0.629032;EPP=13.8677;EPPR=317.874;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.2;PAIREDR=0.675862;PAO=0;PQA=0;PQR=0;PRO=0;QA=205;QR=5768;RO=145;RPL=5;RPP=13.8677;RPPR=317.874;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=145;SRP=317.874;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:61:61,0:61:2420:0:0:0,-18.3628,-217.946 0/0:39:39,0:39:1566:0:0:0,-11.7402,-141.176 0/1:26:21,5:21:823:5:205:-11.0082,0,-66.5567 0/0:24:24,0:24:959:0:0:0,-7.22472,-86.61 dDocent_Contig_3096 31 . C T 59.5973 . AB=0.125;ABP=61.6401;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=167;DPB=167;DPRA=1.21008;EPP=16.0391;EPPR=350.446;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=54.2375;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=233;QR=6218;RO=160;RPL=0;RPP=16.0391;RPPR=350.446;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=160;SRP=350.446;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:58:58,0:58:2253:0:0:0,-17.4597,-175.484 0/1:48:41,6:41:1569:6:233:-7.05664,0,-107.648 0/0:37:37,0:37:1450:0:0:0,-11.1381,-127.961 0/0:24:24,0:24:946:0:0:0,-7.22472,-85.4454 dDocent_Contig_3115 14 . C T 4640.53 . AB=0.0714286;ABP=70.0157;AC=0;AF=0;AN=8;AO=3;CIGAR=2X;DP=194;DPB=194;DPRA=0;EPP=9.52472;EPPR=98.5551;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.977273;PAO=0;PQA=0;PQR=0;PRO=0;QA=120;QR=1718;RO=44;RPL=0;RPP=9.52472;RPPR=98.5551;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:42:12,3,27:12:481:3,27:120,1079:-85.2551,-78.9822,-117.707,0,-29.7426,-31.4999 0|0:52:8,0,44:8:290:0,44:0,1757:-142.693,-145.102,-168.765,0,-24.0306,-10.7853 0|0:50:12,0,38:12:483:0,38:0,1509:-121,-124.613,-164.42,0,-40.2076,-28.7685 0|0:50:12,0,38:12:464:0,38:0,1499:-120.094,-123.706,-161.806,0,-38.4878,-27.0486 dDocent_Contig_3116 10 . T C 1798.89 . AB=0.129562;ABP=1309.35;AC=4;AF=0.5;AN=8;AO=142;CIGAR=1X;DP=1096;DPB=1096;DPRA=0;EPP=311.359;EPPR=2074.59;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.964789;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=5709;QR=38080;RO=954;RPL=0;RPP=311.359;RPPR=2074.59;RPR=142;RUN=1;SAF=142;SAP=311.359;SAR=0;SRF=954;SRP=2074.59;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:331:282,49:282:11228:49:1967:-77.582,0,-910.111 0/1:278:244,34:244:9773:34:1380:-40.7646,0,-795.245 0/1:254:227,27:227:9039:27:1083:-21.2955,0,-736.524 0/1:233:201,32:201:8040:32:1279:-45.237,0,-653.02 dDocent_Contig_3118 10 . T C 309.602 . AB=0.173469;ABP=93.769;AC=1;AF=0.125;AN=8;AO=32;CIGAR=1X;DP=376;DPB=376;DPRA=0;EPP=72.4974;EPPR=749.997;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.991279;PAO=0;PQA=0;PQR=0;PRO=0;QA=1285;QR=13759;RO=344;RPL=0;RPP=72.4974;RPPR=749.997;RPR=32;RUN=1;SAF=32;SAP=72.4974;SAR=0;SRF=344;SRP=749.997;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:98:81,17:81:3248:17:677:-31.7554,0,-262.876 0/0:154:147,7:147:5874:7:285:0,-20.3342,-502.425 0/0:71:67,4:67:2677:4:159:0,-6.68138,-226.361 0/0:53:49,4:49:1960:4:164:0,-0.804691,-161.442 dDocent_Contig_3119 119 . C A 46.9416 . AB=0.121212;ABP=85.263;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X;DP=244;DPB=244;DPRA=0.98374;EPP=22.5536;EPPR=511.135;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.974359;PAO=0;PQA=0;PQR=0;PRO=0;QA=313;QR=7594;RO=234;RPL=0;RPP=22.5536;RPPR=511.135;RPR=9;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=511.135;SRR=234;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:66:58,8:58:1912:8:278:-5.49003,0,-152.487 0/0:66:66,0:66:2100:0:0:0,-19.868,-189.257 0/0:57:56,0:56:1826:0:0:0,-16.8577,-164.537 0/0:55:54,1:54:1756:1:35:0,-13.058,-154.814 dDocent_Contig_3120 137 . T A 171.058 . AB=0.153846;ABP=84.19;AC=4;AF=0.5;AN=8;AO=12;CIGAR=1X;DP=78;DPB=78;DPRA=0;EPP=29.068;EPPR=146.327;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=488;QR=2632;RO=66;RPL=0;RPP=29.068;RPPR=146.327;RPR=12;RUN=1;SAF=0;SAP=29.068;SAR=12;SRF=0;SRP=146.327;SRR=66;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:16,4:16:649:4:163:-9.03783,0,-52.7231 0/1:22:19,3:19:755:3:120:-4.56465,0,-61.6459 0/1:15:12,3:12:483:3:123:-6.94934,0,-39.3058 0/1:21:19,2:19:745:2:82:-1.45805,0,-61.0474 dDocent_Contig_3121 16 . C T 3420.59 . AB=0.152455;ABP=409.031;AC=1;AF=0.125;AN=8;AO=59;CIGAR=3M1I3M1X5M;DP=501;DPB=516.75;DPRA=0;EPP=131.127;EPPR=530.678;GTI=0;LEN=1;MEANALT=5;MQM=57.8644;MQMR=60;NS=4;NUMALT=4;ODDS=0;PAIRED=0.949153;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2342;QR=9513;RO=243;RPL=0;RPP=131.127;RPPR=530.678;RPR=59;RUN=1;SAF=59;SAP=131.127;SAR=0;SRF=243;SRP=530.678;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:114:68,0,16,0,28:68:2672:0,16,0,28:0,590,0,1043:-64.9144,-85.3844,-305.172,-37.1578,-256.949,-252.133,-85.3844,-305.172,-256.949,-305.172,0,-219.801,-171.579,-219.801,-211.372 0|0:167:67,0,19,20,61:67:2634:0,19,20,61:0,736,788,2339:-171.79,-191.959,-408.616,-131.498,-348.155,-342.436,-127.278,-343.936,-283.475,-337.915,0,-216.656,-156.196,-151.976,-198.293 0|0:127:64,8,9,18,23:64:2510:8,9,18,23:293,346,711,893:-54.1076,-49.4412,-253.452,-45.2256,-227.712,-248.936,-15.356,-197.845,-193.63,-216.36,0,-182.489,-178.274,-148.407,-199.498 0|1:93:44,0,6,21,22:44:1697:0,6,21,22:0,239,843,836:-56.2243,-69.4696,-208.81,-49.7876,-189.128,-187.322,0,-139.344,-119.661,-133.022,-0.919508,-140.253,-120.571,-70.7866,-133.63 dDocent_Contig_3123 50 . G A 11416.6 . AB=0.460819;ABP=14.4112;AC=4;AF=0.5;AN=8;AO=394;CIGAR=1X;DP=855;DPB=855;DPRA=0;EPP=858.57;EPPR=1004.06;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=15600;QR=18193;RO=461;RPL=394;RPP=858.57;RPPR=1004.06;RPR=0;RUN=1;SAF=394;SAP=858.57;SAR=0;SRF=461;SRP=1004.06;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:318:176,142:176:6937:142:5645:-412.155,0,-528.318 0/1:262:165,97:165:6466:97:3848:-267.468,0,-502.839 0/1:162:51,111:51:2038:111:4369:-344.395,0,-134.846 0/1:113:69,44:69:2752:44:1738:-122.629,0,-213.773 dDocent_Contig_3125 34 . G T 680.23 . AB=0.097561;ABP=118.363;AC=0;AF=0;AN=8;AO=8;CIGAR=1M3D2M1X3M1X2M;DP=104;DPB=94.3077;DPRA=0;EPP=20.3821;EPPR=133.299;GTI=0;LEN=1;MEANALT=3.33333;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=0.966667;PAO=0;PQA=0;PQR=0;PRO=0;QA=300;QR=2237;RO=60;RPL=0;RPP=20.3821;RPPR=133.299;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:37:26,3,7,1:26:973:3,7,1:109,228,40:-10.5503,-9.46869,-88.2732,0,-70.7797,-77.572,-15.0763,-85.8802,-76.3833,-94.4798 0|0:22:12,0,2,8:12:444:0,2,8:0,72,314:-22.2377,-25.85,-62.1619,-19.9817,-56.2888,-55.6867,0,-36.329,-30.4556,-33.9208 0|0:29:13,4,1,9:13:491:4,1,9:152,38,339:-23.8822,-15.3232,-54.3759,-24.6777,-52.4629,-64.6295,0,-27.8003,-37.1526,-37.5607 0|0:16:9,1,0,6:9:329:1,0,6:39,0,232:-16.3425,-15.8454,-42.4124,-19.0517,-42.7135,-45.9203,0,-23.6505,-26.8588,-25.0526 dDocent_Contig_3126 39 . A G 14600.1 . AB=0.695716;ABP=228.256;AC=4;AF=0.5;AN=8;AO=471;CIGAR=1X;DP=677;DPB=677;DPRA=0;EPP=1025.77;EPPR=450.334;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=18545;QR=8150;RO=206;RPL=0;RPP=1025.77;RPPR=450.334;RPR=471;RUN=1;SAF=471;SAP=1025.77;SAR=0;SRF=206;SRP=450.334;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:231:77,154:77:3031:154:6117:-480.769,0,-203.337 0/1:195:57,138:57:2243:138:5362:-423.764,0,-143.345 0/1:151:46,105:46:1832:105:4134:-326.586,0,-119.635 0/1:100:26,74:26:1044:74:2932:-233.881,0,-64.1502 dDocent_Contig_3127 65 . G A 31.3454 . AB=0.104167;ABP=68.3354;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=112;DPB=112;DPRA=2.25;EPP=13.8677;EPPR=235.358;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=200;QR=4194;RO=107;RPL=5;RPP=13.8677;RPPR=235.358;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=107;SRP=235.358;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:48:43,5:43:1671:5:200:-3.9301,0,-136.157 0/0:31:31,0:31:1205:0:0:0,-9.33193,-108.726 0/0:23:23,0:23:917:0:0:0,-6.92369,-82.8377 0/0:10:10,0:10:401:0:0:0,-3.0103,-36.4467 dDocent_Contig_3128 60 . G A 2634.42 . AB=0.384058;ABP=35.2362;AC=4;AF=0.5;AN=8;AO=106;CIGAR=1X;DP=276;DPB=276;DPRA=0;EPP=233.186;EPPR=372.161;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.988235;PAO=0;PQA=0;PQR=0;PRO=0;QA=3892;QR=6424;RO=170;RPL=106;RPP=233.186;RPPR=372.161;RPR=0;RUN=1;SAF=106;SAP=233.186;SAR=0;SRF=170;SRP=372.161;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:77:50,27:50:1867:27:1006:-67.6612,0,-145.095 0/1:68:41,27:41:1566:27:1010:-70.7336,0,-120.738 0/1:92:48,44:48:1809:44:1567:-113.604,0,-135.372 0/1:39:31,8:31:1182:8:309:-16.4329,0,-94.937 dDocent_Contig_3129 49 . T C 45.1887 . AB=0.137931;ABP=36.0317;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=109;DPB=109;DPRA=1.0875;EPP=11.6962;EPPR=231.015;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=152;QR=3767;RO=105;RPL=0;RPP=11.6962;RPPR=231.015;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=105;SRP=231.015;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:25,4:25:901:4:152:-5.31474,0,-72.6697 0/0:43:43,0:43:1543:0:0:0,-12.9443,-139.149 0/0:17:17,0:17:613:0:0:0,-5.11751,-55.491 0/0:20:20,0:20:710:0:0:0,-6.0206,-64.2168 dDocent_Contig_3130 181 . A G 39.4335 . AB=0.135135;ABP=45.7942;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X;DP=267;DPB=267;DPRA=0.885845;EPP=22.5536;EPPR=563.25;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=340;QR=10364;RO=258;RPL=9;RPP=22.5536;RPPR=563.25;RPR=0;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=563.25;SRR=258;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:73:73,0:73:2925:0:0:0,-21.9752,-263.337 0/0:121:118,3:118:4768:3:123:0,-24.9598,-417.538 0/0:36:35,1:35:1383:1:41:0,-6.74251,-120.628 0/1:37:32,5:32:1288:5:176:-5.04021,0,-105.045 dDocent_Contig_3131 19 . G A 34.2563 . AB=0.114286;ABP=48.239;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=171;DPB=171;DPRA=1.12821;EPP=20.3821;EPPR=356.96;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.981595;PAO=0;PQA=0;PQR=0;PRO=0;QA=317;QR=6448;RO=163;RPL=0;RPP=20.3821;RPPR=356.96;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=163;SRP=356.96;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:50:48,2:48:1887:2:79:0,-7.55426,-162.537 0/0:39:39,0:39:1545:0:0:0,-11.7402,-139.291 0/0:47:45,2:45:1782:2:75:0,-7.02961,-153.48 0/1:35:31,4:31:1234:4:163:-4.52238,0,-100.794 dDocent_Contig_3133 1 . N G 249.83 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=7;CIGAR=1X;DP=7;DPB=7;DPRA=0;EPP=18.2106;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=266;QR=0;RO=0;RPL=0;RPP=18.2106;RPPR=0;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:121:-11.2802,-0.90309,0 ./.:.:.:.:.:.:.:. 1/1:4:0,4:0:0:4:145:-13.4002,-1.20412,0 ./.:.:.:.:.:.:.:. dDocent_Contig_3134 16 . C A 228.575 . AB=0.321429;ABP=10.7656;AC=2;AF=0.25;AN=8;AO=9;CIGAR=1X;DP=55;DPB=55;DPRA=1.03704;EPP=22.5536;EPPR=100.727;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=364;QR=1817;RO=45;RPL=0;RPP=22.5536;RPPR=100.727;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:23:23,0:23:922:0:0:0,-6.92369,-83.2861 0/1:19:12,6:12:487:6:243:-16.4803,0,-38.4176 0/1:9:6,3:6:246:3:121:-8.57072,0,-19.8108 0/0:4:4,0:4:162:0:0:0,-1.20412,-14.967 dDocent_Contig_3135 11 . C T 2626.28 . AB=0.448276;ABP=7.72764;AC=4;AF=0.5;AN=8;AO=91;CIGAR=1X;DP=203;DPB=203;DPRA=0;EPP=200.614;EPPR=246.215;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3639;QR=4393;RO=112;RPL=0;RPP=200.614;RPPR=246.215;RPR=91;RUN=1;SAF=91;SAP=200.614;SAR=0;SRF=112;SRP=246.215;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:59:20,39:20:801:39:1565:-123.321,0,-54.6466 0/1:64:30,34:30:1150:34:1343:-101.86,0,-84.5133 0/1:44:32,12:32:1280:12:486:-30.8442,0,-102.224 0/1:36:30,6:30:1162:6:245:-11.5924,0,-94.0173 dDocent_Contig_3136 17 . A G 74.337 . AB=0.109756;ABP=111.478;AC=1;AF=0.125;AN=8;AO=15;CIGAR=1X;DP=229;DPB=229;DPRA=2.29885;EPP=35.5824;EPPR=467.705;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.8;PAIREDR=0.901869;PAO=0;PQA=0;PQR=0;PRO=0;QA=598;QR=8553;RO=214;RPL=0;RPP=35.5824;RPPR=467.705;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=214;SRP=467.705;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:84:80,4:80:3198:4:153:0,-11.1462,-273.747 0/1:82:73,9:73:2914:9:365:-8.5306,0,-237.674 0/0:34:32,2:32:1284:2:80:0,-2.64323,-108.232 0/0:29:29,0:29:1157:0:0:0,-8.72987,-104.411 dDocent_Contig_3138 30 . A T 124.965 . AB=0.118644;ABP=152.069;AC=1;AF=0.125;AN=8;AO=15;CIGAR=1X;DP=460;DPB=460;DPRA=0.974249;EPP=35.5824;EPPR=969.316;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=583;QR=17285;RO=445;RPL=0;RPP=35.5824;RPPR=969.316;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=445;SRP=969.316;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:147:147,0:147:5734:0:0:0,-44.2514,-515.899 0/0:109:108,1:108:4197:1:41:0,-28.7177,-373.626 0/1:118:104,14:104:4067:14:542:-13.5934,0,-330.507 0/0:86:86,0:86:3287:0:0:0,-25.8886,-295.912 dDocent_Contig_3139 98 . N T 207.483 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=7;CIGAR=1X;DP=7;DPB=7;DPRA=0;EPP=18.2106;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=8.07091;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=227;QR=0;RO=0;RPL=7;RPP=18.2106;RPPR=0;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:7:0,7:0:0:7:227:-20.7482,-2.10721,0 dDocent_Contig_3140 13 . C A 2353.87 . AB=0.21161;ABP=388.768;AC=4;AF=0.5;AN=8;AO=113;CIGAR=1X;DP=534;DPB=534;DPRA=0;EPP=248.387;EPPR=904.171;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4433;QR=16532;RO=415;RPL=0;RPP=248.387;RPPR=904.171;RPR=113;RUN=1;SAF=113;SAP=248.387;SAR=0;SRF=415;SRP=904.171;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:165:141,24:141:5686:24:940:-35.2322,0,-461.847 0/1:165:115,46:115:4598:46:1791:-112.543,0,-364.872 0/1:119:92,25:92:3599:25:988:-53.6061,0,-288.349 0/1:85:67,18:67:2649:18:714:-38.9956,0,-212.955 dDocent_Contig_3142 1 . N G 117.905 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=119;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:81:-7.68573,-0.60206,0 ./.:.:.:.:.:.:.:. 1/1:1:0,1:0:0:1:38:-3.79727,-0.30103,0 ./.:.:.:.:.:.:.:. dDocent_Contig_3143 61 . T A 246.064 . AB=0.588235;ABP=4.1599;AC=1;AF=0.125;AN=8;AO=10;CIGAR=1X;DP=51;DPB=51;DPRA=1.5;EPP=24.725;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=339;QR=1632;RO=41;RPL=10;RPP=24.725;RPPR=92.0407;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:11,0:11:435:0:0:0,-3.31133,-39.5036 0/1:17:7,10:7:279:10:339:-25.7033,0,-20.3634 0/0:13:13,0:13:517:0:0:0,-3.91339,-46.8787 0/0:10:10,0:10:401:0:0:0,-3.0103,-36.4495 dDocent_Contig_3144 1 . N T 728.409 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=20;CIGAR=1X;DP=20;DPB=20;DPRA=0;EPP=46.4397;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=798;QR=0;RO=0;RPL=0;RPP=46.4397;RPPR=0;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:15:0,15:0:0:15:595:-53.8866,-4.51545,0 ./.:.:.:.:.:.:.:. 1/1:5:0,5:0:0:5:203:-18.6531,-1.50515,0 ./.:.:.:.:.:.:.:. dDocent_Contig_3145 131 . G T 78.7202 . AB=0.192308;ABP=24.391;AC=2;AF=0.25;AN=8;AO=5;CIGAR=2X;DP=89;DPB=89;DPRA=0.412698;EPP=6.91895;EPPR=176.728;GTI=0;LEN=1;MEANALT=2.5;MQM=56;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.1375;PAO=0;PQA=0;PQR=0;PRO=0;QA=187;QR=3057;RO=80;RPL=0;RPP=13.8677;RPPR=176.728;RPR=5;RUN=1;SAF=1;SAP=6.91895;SAR=4;SRF=0;SRP=176.728;SRR=80;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:33:33,0:33:1273:0:0:0,-9.93399,-114.858 0|0:30:29,0:29:1095:0:0:0,-8.72987,-98.4464 0|1:15:12,2:12:458:2:74:-2.65487,0,-37.279 0|1:11:6,3:6:231:3:113:-7.405,0,-18.097 dDocent_Contig_3146 47 . G A 979.04 . AB=0.317073;ABP=38.7602;AC=4;AF=0.5;AN=8;AO=39;CIGAR=1X;DP=123;DPB=123;DPRA=0;EPP=87.6977;EPPR=185.414;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1539;QR=3322;RO=84;RPL=0;RPP=87.6977;RPPR=185.414;RPR=39;RUN=1;SAF=39;SAP=87.6977;SAR=0;SRF=84;SRP=185.414;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:22,6:22:884:6:220:-11.7164,0,-71.4374 0/1:30:20,10:20:812:10:400:-27.3284,0,-64.3648 0/1:40:28,12:28:1079:12:479:-31.4189,0,-85.3549 0/1:25:14,11:14:547:11:440:-32.43,0,-42.0426 dDocent_Contig_3147 16 . A T 305.444 . AB=0.245283;ABP=32.8783;AC=1;AF=0.125;AN=8;AO=15;CIGAR=1X;DP=258;DPB=258;DPRA=1.38889;EPP=35.5824;EPPR=530.678;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.995885;PAO=0;PQA=0;PQR=0;PRO=0;QA=596;QR=9687;RO=243;RPL=0;RPP=35.5824;RPPR=530.678;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=243;SRP=530.678;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:68:68,0:68:2729:0:0:0,-20.47,-245.728 0/1:53:40,13:40:1591:13:525:-31.6413,0,-127.475 0/0:97:95,2:95:3754:2:71:0,-22.4595,-331.14 0/0:40:40,0:40:1613:0:0:0,-12.0412,-145.396 dDocent_Contig_3148 130 . C A 71.0581 . AB=0.2;ABP=22.5536;AC=1;AF=0.125;AN=8;AO=6;CIGAR=2X;DP=59;DPB=59;DPRA=1.80952;EPP=16.0391;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=206;QR=1728;RO=53;RPL=0;RPP=16.0391;RPPR=118.098;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=118.098;SRR=53;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:15:15,0:15:496:0:0:0,-4.51545,-44.9573 0|0:6:6,0:6:195:0:0:0,-1.80618,-17.8694 0|0:13:12,1:12:391:1:35:0,-0.414761,-32.0073 0|1:25:20,5:20:646:5:171:-8.20098,0,-50.9204 dDocent_Contig_3149 98 . N G 323.956 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=10;CIGAR=2X;DP=10;DPB=10;DPRA=0;EPP=24.725;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=349;QR=0;RO=0;RPL=10;RPP=24.725;RPPR=0;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:8:0,8:0:0:8:280:-25.5397,-2.40824,0 .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. 1|1:2:0,2:0:0:2:69:-6.55266,-0.60206,0 dDocent_Contig_3150 18 . G T 11681.2 . AB=0.878788;ABP=249.769;AC=6;AF=0.75;AN=8;AO=366;CIGAR=1X2M3X2M2X;DP=392;DPB=391.9;DPRA=0;EPP=797.769;EPPR=50.7827;GTI=0;LEN=1;MEANALT=2;MQM=47.5765;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.0191257;PAIREDR=0.909091;PAO=0;PQA=0;PQR=0;PRO=0;QA=13839;QR=840;RO=22;RPL=0;RPP=797.769;RPPR=50.7827;RPR=366;RUN=1;SAF=366;SAP=797.769;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:105:0,105:0:0:105:4009:-355.963,-31.6082,0 1|1:89:0,87:0:0:87:3232:-286.56,-26.1896,0 0|1:91:8,82:8:310:82:3092:-247.484,0,-0.771174 0|1:107:14,92:14:530:92:3506:-279.655,0,-15.872 dDocent_Contig_3151 43 . G T 519.739 . AB=0.15942;ABP=211.566;AC=1;AF=0.125;AN=8;AO=40;CIGAR=1X;DP=725;DPB=725;DPRA=1.11988;EPP=89.8692;EPPR=1488.3;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.675;PAIREDR=0.650585;PAO=0;PQA=0;PQR=0;PRO=0;QA=1561;QR=26962;RO=684;RPL=0;RPP=89.8692;RPPR=1488.3;RPR=40;RUN=1;SAF=40;SAP=89.8692;SAR=0;SRF=684;SRP=1488.3;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:195:195,0:195:7728:0:0:0,-58.7008,-695.157 0/0:176:168,7:168:6602:7:282:0,-27.3357,-568.184 0/1:207:174,33:174:6872:33:1279:-53.0708,0,-555.891 0/0:147:147,0:147:5760:0:0:0,-44.2514,-518.25 dDocent_Contig_3152 35 . A G 5645.35 . AB=0.59306;ABP=26.8554;AC=4;AF=0.5;AN=8;AO=188;CIGAR=1X;DP=317;DPB=317;DPRA=0;EPP=411.247;EPPR=283.13;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7379;QR=5107;RO=129;RPL=0;RPP=411.247;RPPR=283.13;RPR=188;RUN=1;SAF=188;SAP=411.247;SAR=0;SRF=129;SRP=283.13;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:66:21,45:21:803:45:1808:-143.065,0,-52.7135 0/1:91:47,44:47:1873:44:1751:-130.415,0,-141.388 0/1:109:55,54:55:2197:54:2115:-157.724,0,-165.094 0/1:51:6,45:6:234:45:1705:-138.32,0,-6.07613 dDocent_Contig_3153 18 . G A 4507.43 . AB=0.645022;ABP=45.2083;AC=4;AF=0.5;AN=8;AO=149;CIGAR=1X;DP=231;DPB=231;DPRA=0;EPP=326.56;EPPR=181.071;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.987805;PAO=0;PQA=0;PQR=0;PRO=0;QA=5825;QR=3180;RO=82;RPL=0;RPP=326.56;RPPR=181.071;RPR=149;RUN=1;SAF=149;SAP=326.56;SAR=0;SRF=82;SRP=181.071;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:97:24,73:24:932:73:2854:-227.789,0,-54.9799 0/1:91:48,43:48:1853:43:1691:-125.034,0,-139.595 0/1:25:7,18:7:282:18:679:-53.8992,0,-18.2274 0/1:18:3,15:3:113:15:601:-49.0105,0,-5.12027 dDocent_Contig_3154 8 . T C 238.993 . AB=0.25;ABP=26.8965;AC=1;AF=0.125;AN=8;AO=11;CIGAR=3X;DP=805;DPB=805;DPRA=0.173456;EPP=26.8965;EPPR=1727.16;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.983627;PAO=0;PQA=0;PQR=0;PRO=0;QA=421;QR=30392;RO=794;RPL=0;RPP=26.8965;RPPR=1727.16;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=794;SRP=1727.16;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:488:488,0:488:18733:0:0:0,-146.903,-1684.98 0|0:239:239,0:239:9121:0:0:0,-71.9462,-820.625 0|0:34:34,0:34:1306:0:0:0,-10.235,-117.829 0|1:44:33,11:33:1232:11:421:-24.9962,0,-97.928 dDocent_Contig_3155 7 . C T 90.971 . AB=0.171429;ABP=35.8306;AC=2;AF=0.25;AN=8;AO=6;CIGAR=1X1M1X;DP=48;DPB=48;DPRA=2.69231;EPP=8.80089;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=0.666667;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=225;QR=1616;RO=42;RPL=0;RPP=16.0391;RPPR=94.2121;RPR=6;RUN=1;SAF=5;SAP=8.80089;SAR=1;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:24:19,5:19:731:5:186:-9.87648,0,-58.8969 0|0:7:7,0:7:271:0:0:0,-2.10721,-24.7564 0|1:11:10,1:10:384:1:39:-0.585235,0,-31.6046 0|0:6:6,0:6:230:0:0:0,-1.80618,-21.0667 dDocent_Contig_3156 13 . C T 576.57 . AB=0.326531;ABP=15.8176;AC=2;AF=0.25;AN=8;AO=18;CIGAR=1M1X;DP=83;DPB=83;DPRA=0;EPP=42.0968;EPPR=124.613;GTI=0;LEN=1;MEANALT=1.5;MQM=55.6667;MQMR=59.5357;NS=4;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=0.964286;PAO=0;PQA=0;PQR=0;PRO=0;QA=710;QR=2221;RO=56;RPL=0;RPP=42.0968;RPPR=124.613;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:34:32,0,2,0:32:1261:0,2,0:0,81,0:0,-9.63296,-113.354,-2.55167,-106.676,-106.074,-9.63296,-113.354,-106.676,-113.354 0|0:16:6,3,1,6:6:233:3,1,6:123,40,240:-17.9643,-9.92616,-28.1597,-16.4812,-25.7731,-35.3177,0,-9.28841,-15.8457,-17.3295 0|1:12:9,0,3,0:9:365:0,3,0:0,101,0:-5.7334,-8.44267,-38.5128,0,-30.4215,-29.5184,-8.44267,-38.5128,-30.4215,-38.5128 0|1:21:9,0,12,0:9:362:0,12,0:0,488,0:-37.5511,-40.2604,-70.0258,0,-30.167,-26.5547,-40.2604,-70.0258,-30.167,-70.0258 dDocent_Contig_3157 92 . G A 425.417 . AB=0.275862;ABP=40.9736;AC=2;AF=0.25;AN=8;AO=24;CIGAR=1X;DP=235;DPB=235;DPRA=0.587838;EPP=55.1256;EPPR=461.191;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=780;QR=7163;RO=211;RPL=24;RPP=55.1256;RPPR=461.191;RPR=0;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=211;SRP=461.191;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:89:89,0:89:3008:0:0:0,-26.7917,-270.959 0/0:59:59,0:59:1978:0:0:0,-17.7608,-178.292 0/1:27:24,3:24:833:3:103:-1.48221,0,-67.1612 0/1:60:39,21:39:1344:21:677:-43.172,0,-103.198 dDocent_Contig_3158 21 . A G 816.062 . AB=0.169611;ABP=271.329;AC=3;AF=0.375;AN=8;AO=48;CIGAR=1X;DP=355;DPB=355;DPRA=1.31019;EPP=107.241;EPPR=669.652;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1882;QR=12038;RO=307;RPL=0;RPP=107.241;RPPR=669.652;RPR=48;RUN=1;SAF=48;SAP=107.241;SAR=0;SRF=307;SRP=669.652;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:72:72,0:72:2822:0:0:0,-21.6742,-254.113 0/1:64:43,21:43:1692:21:820:-54.8539,0,-133.247 0/1:129:111,18:111:4357:18:710:-25.3961,0,-353.284 0/1:90:81,9:81:3167:9:352:-4.94799,0,-258.031 dDocent_Contig_3159 19 . C T 185.318 . AB=0.169231;ABP=64.7803;AC=2;AF=0.25;AN=8;AO=11;CIGAR=1X;DP=105;DPB=105;DPRA=1.625;EPP=26.8965;EPPR=207.129;GTI=0;LEN=1;MEANALT=1;MQM=56.2727;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.818182;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=448;QR=3796;RO=94;RPL=0;RPP=26.8965;RPPR=207.129;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=94;SRP=207.129;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:38:31,7:31:1249:7:284:-13.8617,0,-101.24 0/0:23:23,0:23:937:0:0:0,-6.92369,-84.6287 0/1:27:23,4:23:923:4:164:-6.86392,0,-75.2431 0/0:17:17,0:17:687:0:0:0,-5.11751,-62.159 dDocent_Contig_3162 22 . T C 5425.12 . AB=0.832536;ABP=203.752;AC=4;AF=0.5;AN=8;AO=174;CIGAR=1X;DP=209;DPB=209;DPRA=0;EPP=380.846;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=58.069;MQMR=44.4286;NS=4;NUMALT=1;ODDS=0;PAIRED=0.862069;PAIREDR=0.457143;PAO=0;PQA=0;PQR=0;PRO=0;QA=6954;QR=1412;RO=35;RPL=0;RPP=380.846;RPPR=79.0118;RPR=174;RUN=1;SAF=174;SAP=380.846;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:65:9,56:9:365:56:2234:-175.532,0,-9.28134 0/1:52:11,41:11:443:41:1647:-132.801,0,-21.2054 0/1:53:8,45:8:318:45:1796:-135.716,0,-6.80215 0/1:39:7,32:7:286:32:1277:-103.453,0,-6.51902 dDocent_Contig_3163 23 . C T 286.373 . AB=0.195122;ABP=69.2137;AC=2;AF=0.25;AN=8;AO=20;CIGAR=1X;DP=167;DPB=167;DPRA=0;EPP=46.4397;EPPR=322.217;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=739;QR=5748;RO=147;RPL=0;RPP=46.4397;RPPR=322.217;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=147;SRP=322.217;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:62:49,13:49:1912:13:500:-26.6841,0,-153.621 0/0:47:46,1:46:1809:1:37:0,-10.4506,-159.334 0/0:38:35,3:35:1353:3:93:0,-2.76439,-113.354 0/1:20:17,3:17:674:3:109:-4.1469,0,-54.9693 dDocent_Contig_3164 7 . C T 988.367 . AB=0.0727273;ABP=177.439;AC=0;AF=0;AN=8;AO=11;CIGAR=3X5M1X5M1X1M;DP=225;DPB=226.5;DPRA=0;EPP=26.8965;EPPR=313.59;GTI=0;LEN=1;MEANALT=5;MQM=60;MQMR=60;NS=4;NUMALT=4;ODDS=2.77556e-17;PAIRED=1;PAIREDR=0.986395;PAO=4;PQA=147;PQR=0;PRO=0;QA=413;QR=5763;RO=147;RPL=0;RPP=26.8965;RPPR=322.217;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=146;SRP=313.59;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:72:62,4,0,0,3:62:2434:4,0,0,3:153,0,0,109:0,-6.09144,-205.121,-18.6639,-206.325,-218.881,-18.6639,-206.325,-218.881,-218.881,-9.75877,-197.425,-209.98,-209.98,-209.077 0|0:71:31,9,1,23,4:31:1213:9,1,23,4:332,37,886,153:-63.4412,-45.619,-142.659,-69.7459,-142.341,-169.192,0,-72.617,-96.7421,-92.8454,-60.2156,-132.813,-156.937,-87.2126,-158.76 0|0:39:26,3,2,4,4:26:1016:3,2,4,4:109,78,158,151:-5.18108,-4.11256,-86.7366,-6.59458,-81.2279,-89.5244,0,-74.6371,-77.1237,-82.3315,-0.633087,-75.2646,-77.7512,-71.1603,-82.9589 0|0:43:28,1,0,13,0:28:1100:1,0,13,0:39,0,513,0:-33.7816,-39.0049,-129.178,-42.2104,-129.479,-132.685,0,-87.2682,-90.474,-86.5606,-42.2104,-129.479,-132.685,-90.474,-132.685 dDocent_Contig_3165 13 . A G 301.928 . AB=0.27381;ABP=40.3389;AC=2;AF=0.25;AN=8;AO=28;CIGAR=1X;DP=123;DPB=123;DPRA=0;EPP=63.8115;EPPR=209.3;GTI=0;LEN=1;MEANALT=1;MQM=34.9286;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1115;QR=3756;RO=95;RPL=0;RPP=63.8115;RPPR=209.3;RPR=28;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=95;SRP=209.3;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:43:29,14:29:1133:14:559:-15.7848,0,-89.299 0/1:41:32,9:32:1271:9:353:-16.6018,0,-102.313 0/0:21:19,2:19:739:2:81:0,-5.18185,-65.6929 0/0:18:15,3:15:613:3:122:0,-3.73885,-53.8271 dDocent_Contig_3166 107 . N A 339.536 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=11;CIGAR=1X;DP=11;DPB=11;DPRA=0;EPP=26.8965;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=361;QR=0;RO=0;RPL=0;RPP=26.8965;RPPR=0;RPR=11;RUN=1;SAF=0;SAP=26.8965;SAR=11;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:102:-9.51695,-0.90309,0 1/1:2:0,2:0:0:2:67:-6.36304,-0.60206,0 ./.:.:.:.:.:.:.:. 1/1:6:0,6:0:0:6:192:-17.5942,-1.80618,0 dDocent_Contig_3167 8 . T C 51.0225 . AB=0.148148;ABP=32.0437;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X;DP=108;DPB=108;DPRA=2.06667;EPP=22.5536;EPPR=217.986;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=350;QR=3811;RO=99;RPL=0;RPP=22.5536;RPPR=217.986;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=99;SRP=217.986;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:50:46,4:46:1783:4:156:0,-0.634211,-146.304 0/1:27:23,4:23:872:4:155:-6.19763,0,-70.6688 0/0:16:15,1:15:577:1:39:0,-0.919915,-48.3749 0/0:15:15,0:15:579:0:0:0,-4.51545,-52.4524 dDocent_Contig_3168 65 . T C 40.7887 . AB=0.129032;ABP=40.0654;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=222;DPB=222;DPRA=0.486911;EPP=11.6962;EPPR=476.391;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.995413;PAO=0;PQA=0;PQR=0;PRO=0;QA=157;QR=8556;RO=218;RPL=4;RPP=11.6962;RPPR=476.391;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=218;SRP=476.391;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:113:113,0:113:4441:0:0:0,-34.0164,-399.641 0/0:38:38,0:38:1486:0:0:0,-11.4391,-133.991 0/0:40:40,0:40:1590:0:0:0,-12.0412,-143.331 0/1:31:27,4:27:1039:4:157:-5.17575,0,-84.4641 dDocent_Contig_3169 107 . N T 1983.33 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=66;CIGAR=1X;DP=66;DPB=66;DPRA=0;EPP=146.327;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=2182;QR=0;RO=0;RPL=0;RPP=146.327;RPPR=0;RPR=66;RUN=1;SAF=0;SAP=146.327;SAR=66;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:16:0,16:0:0:16:514:-46.5677,-4.81648,0 1/1:24:0,24:0:0:24:794:-71.7675,-7.22472,0 1/1:11:0,11:0:0:11:353:-32.0795,-3.31133,0 1/1:15:0,15:0:0:15:521:-47.2197,-4.51545,0 dDocent_Contig_3170 136 . G T 7504.26 . AB=0.758621;ABP=53.5532;AC=6;AF=0.75;AN=8;AO=222;CIGAR=1X;DP=247;DPB=247;DPRA=0;EPP=485.077;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=8808;QR=982;RO=25;RPL=0;RPP=485.077;RPPR=57.2971;RPR=222;RUN=1;SAF=0;SAP=485.077;SAR=222;SRF=0;SRP=57.2971;SRR=25;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:88:4,84:4:158:84:3346:-286.595,-11.8907,0 1/1:72:0,72:0:0:72:2859:-257.424,-21.6742,0 0/1:40:11,29:11:435:29:1120:-89.0327,0,-27.4613 0/1:47:10,37:10:389:37:1483:-119.568,0,-21.2128 dDocent_Contig_3171 35 . C T 3417.87 . AB=0.222543;ABP=465.722;AC=4;AF=0.5;AN=8;AO=154;CIGAR=1X;DP=692;DPB=692;DPRA=0;EPP=337.417;EPPR=1171.26;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6157;QR=21609;RO=538;RPL=0;RPP=337.417;RPPR=1171.26;RPR=154;RUN=1;SAF=154;SAP=337.417;SAR=0;SRF=538;SRP=1171.26;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:186:169,17:169:6830:17:684:-5.89856,0,-558.36 0/1:203:144,59:144:5757:59:2345:-150.101,0,-456.816 0/1:181:136,45:136:5446:45:1812:-108.803,0,-435.473 0/1:122:89,33:89:3576:33:1316:-81.9748,0,-285.136 dDocent_Contig_3172 10 . A T 177.03 . AB=0.122951;ABP=153.661;AC=2;AF=0.25;AN=8;AO=15;CIGAR=1X;DP=205;DPB=205;DPRA=1.46988;EPP=35.5824;EPPR=415.59;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.9737;NS=4;NUMALT=1;ODDS=0;PAIRED=0.2;PAIREDR=0.684211;PAO=0;PQA=0;PQR=0;PRO=0;QA=609;QR=7548;RO=190;RPL=0;RPP=35.5824;RPPR=415.59;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=190;SRP=415.59;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:74:63,11:63:2519:11:449:-18.4897,0,-204.572 0/1:48:44,4:44:1734:4:160:-0.333477,0,-141.821 0/0:46:46,0:46:1841:0:0:0,-13.8474,-165.895 0/0:37:37,0:37:1454:0:0:0,-11.1381,-131.106 dDocent_Contig_3173 100 . N C 310.944 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=10;CIGAR=3X;DP=10;DPB=10;DPRA=0;EPP=24.725;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=6.77626e-21;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=328;QR=0;RO=0;RPL=10;RPP=24.725;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:5:0,5:0:0:5:165:-15.176,-1.50515,0 1|1:1:0,1:0:0:1:32:-3.19931,-0.30103,0 1|1:4:0,4:0:0:4:131:-12.1144,-1.20412,0 .:.:.:.:.:.:.:. dDocent_Contig_3174 160 . C T 365.816 . AB=0.333333;ABP=13.1438;AC=1;AF=0.125;AN=8;AO=14;CIGAR=1X;DP=73;DPB=73;DPRA=4.06452;EPP=33.4109;EPPR=106.394;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=552;QR=2354;RO=59;RPL=14;RPP=33.4109;RPPR=106.394;RPR=0;RUN=1;SAF=0;SAP=33.4109;SAR=14;SRF=0;SRP=131.127;SRR=59;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:42:28,14:28:1124:14:552:-37.3775,0,-88.7993 0/0:10:10,0:10:403:0:0:0,-3.0103,-36.6297 0/0:10:10,0:10:381:0:0:0,-3.0103,-34.633 0/0:11:11,0:11:446:0:0:0,-3.31133,-40.4956 dDocent_Contig_3175 148 . C A 141.652 . AB=0.272727;ABP=12.8806;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=144;DPB=144;DPRA=0.540984;EPP=16.0391;EPPR=302.673;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=239;QR=5436;RO=138;RPL=0;RPP=16.0391;RPPR=302.673;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=302.673;SRR=138;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:55:55,0:55:2190:0:0:0,-16.5566,-197.269 0/0:47:47,0:47:1827:0:0:0,-14.1484,-164.644 0/0:20:20,0:20:807:0:0:0,-6.0206,-72.9458 0/1:22:16,6:16:612:6:239:-15.2621,0,-48.783 dDocent_Contig_3176 58 . T G 228.15 . AB=0.181818;ABP=12.6832;AC=1;AF=0.125;AN=8;AO=2;CIGAR=7M1X14M;DP=100;DPB=92.7273;DPRA=0.255814;EPP=7.35324;EPPR=189.757;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=3307;RO=86;RPL=2;RPP=7.35324;RPPR=189.757;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=86;SRP=189.757;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:24:16,8,0,0:16:618:8,0,0:304,0,0:-20.4929,0,-48.7312,-25.3094,-51.1395,-76.0671,-25.3094,-51.1395,-76.0671,-76.0671 0|0:43:41,0,0,2:41:1569:0,0,2:0,0,80:0,-12.3422,-141.072,-12.3422,-141.072,-141.072,-5.3525,-134.481,-134.481,-133.879 0|0:22:20,0,0,2:20:764:0,0,2:0,0,81:-1.06307,-7.08367,-69.7459,-7.08367,-69.7459,-69.7459,0,-63.0647,-63.0647,-62.4627 0|1:11:9,0,2,0:9:356:0,2,0:0,82,0:-4.46835,-7.17762,-36.4647,0,-29.6939,-29.0919,-7.17762,-36.4647,-29.6939,-36.4647 dDocent_Contig_3177 1 . N G 77.84 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=4.60517;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:82:-7.77968,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_3178 28 . G A 33.8244 . AB=0.105263;ABP=80.1547;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=268;DPB=268;DPRA=0.810427;EPP=16.0391;EPPR=571.936;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.992366;PAO=0;PQA=0;PQR=0;PRO=0;QA=233;QR=10446;RO=262;RPL=0;RPP=16.0391;RPPR=571.936;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=262;SRP=571.936;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:57:51,6:51:2001:6:233:-4.17814,0,-163.127 0/0:116:116,0:116:4648:0:0:0,-34.9195,-418.231 0/0:54:54,0:54:2175:0:0:0,-16.2556,-195.917 0/0:41:41,0:41:1622:0:0:0,-12.3422,-146.197 dDocent_Contig_3179 69 . A T 437.621 . AB=0.101266;ABP=112.106;AC=4;AF=0.5;AN=8;AO=8;CIGAR=1X4M;DP=158;DPB=158;DPRA=0;EPP=20.3821;EPPR=263.587;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=302;QR=4585;RO=120;RPL=8;RPP=20.3821;RPPR=263.587;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=120;SRP=263.587;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:50:41,8,0:41:1582:8,0:297,0:-12.2214,0,-127.802,-24.5636,-130.21,-154.514 0|1:54:37,12,5:37:1391:12,5:402,191:-21.3791,0,-110.33,-16.8321,-98.2703,-129.305 0|1:29:24,5,0:24:923:5,0:186,0:-8.37152,0,-74.6535,-15.5962,-76.1586,-91.381 0|1:25:18,4,3:18:689:4,3:149,111:-6.77968,0,-55.3415,-3.12067,-47.4688,-58.7606 dDocent_Contig_3180 8 . T G 2562.2 . AB=0.353147;ABP=56.5834;AC=4;AF=0.5;AN=8;AO=101;CIGAR=1X;DP=286;DPB=286;DPRA=0;EPP=222.329;EPPR=404.733;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3845;QR=7045;RO=185;RPL=0;RPP=222.329;RPPR=404.733;RPR=101;RUN=1;SAF=101;SAP=222.329;SAR=0;SRF=185;SRP=404.733;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:90:53,37:53:2024:37:1397:-98.9171,0,-155.299 0/1:105:65,40:65:2494:40:1524:-105.824,0,-193.052 0/1:48:36,12:36:1342:12:461:-27.3915,0,-106.608 0/1:43:31,12:31:1185:12:463:-29.0772,0,-94.0031 dDocent_Contig_3181 41 . C A 3270.13 . AB=0.393939;ABP=32.0291;AC=4;AF=0.5;AN=8;AO=117;CIGAR=1X;DP=297;DPB=297;DPRA=0;EPP=257.073;EPPR=393.875;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4670;QR=7203;RO=180;RPL=0;RPP=257.073;RPPR=393.875;RPR=117;RUN=1;SAF=117;SAP=257.073;SAR=0;SRF=180;SRP=393.875;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:98:74,24:74:2976:24:963:-57.4662,0,-238.424 0/1:77:31,46:31:1247:46:1836:-142.272,0,-89.3169 0/1:65:44,21:44:1761:21:844:-56.7039,0,-139.139 0/1:57:31,26:31:1219:26:1027:-75.5604,0,-92.8146 dDocent_Contig_3183 8 . T C 260.187 . AB=0.244898;ABP=30.7077;AC=1;AF=0.125;AN=8;AO=22;CIGAR=1X2M1X2M1X;DP=768;DPB=768;DPRA=0;EPP=50.7827;EPPR=1612.07;GTI=0;LEN=1;MEANALT=2.25;MQM=53.4545;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.545455;PAIREDR=0.977058;PAO=0;PQA=0;PQR=0;PRO=0;QA=835;QR=28164;RO=741;RPL=0;RPP=50.7827;RPPR=1612.07;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=741;SRP=1612.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:474:466,5:466:17796:5:184:0,-125.465,-1584.13 0|0:216:211,4:211:7978:4:147:0,-51.4246,-704.442 0|1:49:37,12:37:1391:12:464:-27.1156,0,-110.72 0|0:29:27,1:27:999:1:40:0,-4.82777,-86.2247 dDocent_Contig_3185 68 . T G 7387.74 . AB=0.713068;ABP=141.812;AC=4;AF=0.5;AN=8;AO=251;CIGAR=1X;DP=352;DPB=352;DPRA=0;EPP=548.05;EPPR=220.158;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=9433;QR=3761;RO=100;RPL=251;RPP=548.05;RPPR=220.158;RPR=0;RUN=1;SAF=251;SAP=548.05;SAR=0;SRF=100;SRP=220.158;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:79:24,55:24:903:55:2047:-160.677,0,-57.8047 0/1:86:12,74:12:456:74:2778:-224.313,0,-15.4995 0/1:108:33,74:33:1230:74:2769:-216.793,0,-78.3844 0/1:79:31,48:31:1172:48:1839:-141.98,0,-81.9943 dDocent_Contig_3186 12 . C G 84.3506 . AB=0.103774;ABP=147.557;AC=1;AF=0.125;AN=8;AO=21;CIGAR=4M1X2M;DP=348;DPB=345.571;DPRA=0;EPP=48.6112;EPPR=673.995;GTI=0;LEN=1;MEANALT=2.25;MQM=56.9524;MQMR=56.0518;NS=4;NUMALT=2;ODDS=0;PAIRED=0.761905;PAIREDR=0.980583;PAO=0;PQA=0;PQR=0;PRO=0;QA=840;QR=12035;RO=309;RPL=0;RPP=48.6112;RPPR=673.995;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=309;SRP=673.995;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:104:95,5,4:95:3690:5,4:175,162:0,-14.3925,-313.07,-15.2152,-301.216,-314.246 0|0:116:107,3,5:107:4175:3,5:107,202:0,-23.5045,-363.508,-15.5633,-347.785,-354.999 0|1:106:87,8,11:87:3400:8,11:303,435:-9.53196,-10.8885,-282.43,0,-249.124,-270.652 0|0:22:20,1,1:20:770:1,1:39,41:0,-2.82462,-64.3754,-2.62662,-61.2908,-64.1963 dDocent_Contig_3187 86 . A G 1193.65 . AB=0.383562;ABP=20.2036;AC=3;AF=0.375;AN=8;AO=65;CIGAR=1X;DP=237;DPB=237;DPRA=0;EPP=144.156;EPPR=376.504;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2130;QR=5572;RO=172;RPL=65;RPP=144.156;RPPR=376.504;RPR=0;RUN=1;SAF=65;SAP=144.156;SAR=0;SRF=172;SRP=376.504;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:91:82,9:82:2682:9:286:0,-1.34375,-215.579 0/1:55:17,38:17:518:38:1256:-96.7758,0,-30.3548 0/1:54:48,6:48:1583:6:203:-2.34669,0,-126.496 0/1:37:25,12:25:789:12:385:-23.8219,0,-60.1644 dDocent_Contig_3188 86 . G A 174.615 . AB=0.161616;ABP=101.472;AC=2;AF=0.25;AN=8;AO=16;CIGAR=1X;DP=164;DPB=164;DPRA=1.52308;EPP=37.7539;EPPR=322.217;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=542;QR=4961;RO=147;RPL=16;RPP=37.7539;RPPR=322.217;RPR=0;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=147;SRP=322.217;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:44:43,0:43:1452:0:0:0,-12.9443,-130.625 0/1:64:52,12:52:1750:12:402:-17.2361,0,-138.518 0/0:21:21,0:21:710:0:0:0,-6.32163,-64.2167 0/1:35:31,4:31:1049:4:140:-2.40881,0,-84.1808 dDocent_Contig_3189 16 . A G 477.19 . AB=0.183099;ABP=126.876;AC=4;AF=0.5;AN=8;AO=26;CIGAR=1X;DP=142;DPB=142;DPRA=0;EPP=59.4686;EPPR=254.901;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1044;QR=4557;RO=116;RPL=0;RPP=59.4686;RPPR=254.901;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=116;SRP=254.901;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:32:27,5:27:1061:5:201:-8.83756,0,-86.1354 0/1:37:31,6:31:1238:6:243:-11.1101,0,-100.556 0/1:51:40,11:40:1555:11:441:-24.6929,0,-124.837 0/1:22:18,4:18:703:4:159:-8.06817,0,-56.9723 dDocent_Contig_3190 13 . G A 19270.5 . AB=0.476812;ABP=9.45548;AC=4;AF=0.5;AN=8;AO=658;CIGAR=1X;DP=1380;DPB=1380;DPRA=0;EPP=1431.84;EPPR=1568.64;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=26096;QR=28717;RO=721;RPL=0;RPP=1431.84;RPPR=1568.64;RPR=658;RUN=1;SAF=658;SAP=1431.84;SAR=0;SRF=721;SRP=1568.64;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:458:238,219:238:9517:219:8676:-642.366,0,-717.961 0/1:323:157,166:157:6253:166:6620:-498.291,0,-465.294 0/1:353:175,178:175:6967:178:7057:-528.54,0,-520.451 0/1:246:151,95:151:5980:95:3743:-262.843,0,-463.927 dDocent_Contig_3191 9 . G A 1397.43 . AB=0.452174;ABP=5.29507;AC=4;AF=0.5;AN=8;AO=52;CIGAR=1X;DP=115;DPB=115;DPRA=0;EPP=115.927;EPPR=139.813;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1965;QR=2412;RO=63;RPL=0;RPP=115.927;RPPR=139.813;RPR=52;RUN=1;SAF=52;SAP=115.927;SAR=0;SRF=63;SRP=139.813;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:55:36,19:36:1384:19:695:-46.3147,0,-108.285 0/1:28:14,14:14:536:14:541:-40.6072,0,-40.1558 0/1:20:12,8:12:453:8:302:-21.5163,0,-35.0951 0/1:12:1,11:1:39:11:427:-35.1726,0,-0.284204 dDocent_Contig_3192 67 . T A 9262.11 . AB=0.783699;ABP=226.018;AC=5;AF=0.625;AN=8;AO=296;CIGAR=1X;DP=369;DPB=369;DPRA=0;EPP=645.766;EPPR=161.528;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=11558;QR=2819;RO=73;RPL=296;RPP=645.766;RPPR=161.528;RPR=0;RUN=1;SAF=296;SAP=645.766;SAR=0;SRF=73;SRP=161.528;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:134:33,101:33:1264:101:3939:-314.193,0,-73.6773 0/1:109:24,85:24:943:85:3352:-268.946,0,-52.3603 0/1:76:12,64:12:451:64:2492:-201.567,0,-18.0474 1/1:50:4,46:4:161:46:1775:-145.094,-0.176016,0 dDocent_Contig_3193 47 . A T 4098.61 . AB=0.459807;ABP=7.37419;AC=4;AF=0.5;AN=8;AO=143;CIGAR=1X;DP=311;DPB=311;DPRA=0;EPP=313.531;EPPR=367.818;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5638;QR=6525;RO=168;RPL=0;RPP=313.531;RPPR=367.818;RPR=143;RUN=1;SAF=143;SAP=313.531;SAR=0;SRF=168;SRP=367.818;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:113:60,53:60:2324:53:2076:-153.022,0,-175.338 0/1:86:41,45:41:1598:45:1776:-134.181,0,-118.184 0/1:74:52,22:52:2019:22:881:-57.3261,0,-159.649 0/1:38:15,23:15:584:23:905:-70.3217,0,-41.4561 dDocent_Contig_3194 20 . C A 18086.7 . AB=0.848714;ABP=701.17;AC=4;AF=0.5;AN=8;AO=561;CIGAR=1X;DP=661;DPB=661;DPRA=0;EPP=1221.21;EPPR=217.986;GTI=0;LEN=1;MEANALT=1.25;MQM=59.9893;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.996435;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=22371;QR=3938;RO=99;RPL=0;RPP=1221.21;RPPR=217.986;RPR=561;RUN=1;SAF=561;SAP=1221.21;SAR=0;SRF=99;SRP=217.986;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:196:21,175:21:837:175:6987:-569.503,0,-16.6393 0/1:177:19,158:19:760:158:6318:-515.056,0,-15.4353 0/1:144:24,119:24:935:119:4694:-379.027,0,-41.0777 0/1:144:35,109:35:1406:109:4372:-350.073,0,-83.4449 dDocent_Contig_3195 17 . T C 1922.14 . AB=0.278388;ABP=119.466;AC=2;AF=0.25;AN=8;AO=79;CIGAR=1X;DP=432;DPB=432;DPRA=1.19858;EPP=174.557;EPPR=769.54;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3191;QR=14071;RO=353;RPL=0;RPP=174.557;RPPR=769.54;RPR=79;RUN=1;SAF=79;SAP=174.557;SAR=0;SRF=353;SRP=769.54;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:128:91,37:91:3643:37:1494:-96.1654,0,-289.353 0/1:145:106,39:106:4236:39:1574:-98.2422,0,-337.549 0/0:94:94,0:94:3755:0:0:0,-28.2968,-337.953 0/0:65:62,3:62:2437:3:123:0,-8.10216,-208.019 dDocent_Contig_3197 14 . C T 52.8674 . AB=0.111111;ABP=85.7675;AC=2;AF=0.25;AN=8;AO=12;CIGAR=1X;DP=195;DPB=195;DPRA=0.622549;EPP=29.068;EPPR=400.39;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=0.989071;PAO=0;PQA=0;PQR=0;PRO=0;QA=488;QR=7385;RO=183;RPL=0;RPP=29.068;RPPR=400.39;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=183;SRP=400.39;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:64:59,5:59:2380:5:203:0,-0.612864,-195.694 0/0:68:68,0:68:2755:0:0:0,-20.47,-248.05 0/1:45:40,5:40:1603:5:203:-5.10671,0,-130.956 0/1:18:16,2:16:647:2:82:-2.36114,0,-53.1422 dDocent_Contig_3199 134 . A G 2964.34 . AB=0.57377;ABP=5.89373;AC=6;AF=0.75;AN=8;AO=106;CIGAR=1X;DP=137;DPB=137;DPRA=0;EPP=233.186;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3680;QR=1038;RO=31;RPL=0;RPP=233.186;RPPR=70.3259;RPR=106;RUN=1;SAF=0;SAP=233.186;SAR=106;SRF=0;SRP=70.3259;SRR=31;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:71:5,66:5:168:66:2305:-192.259,-5.92231,0 0/1:28:10,18:10:332:18:609:-46.6959,0,-21.7722 0/1:33:16,17:16:538:17:590:-43.4872,0,-38.8042 1/1:5:0,5:0:0:5:176:-16.1852,-1.50515,0 dDocent_Contig_3200 8 . G A 4703.93 . AB=0.613636;ABP=32.6213;AC=4;AF=0.5;AN=8;AO=162;CIGAR=1X;DP=264;DPB=264;DPRA=0;EPP=354.789;EPPR=224.5;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.981481;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6153;QR=3886;RO=102;RPL=0;RPP=354.789;RPPR=224.5;RPR=162;RUN=1;SAF=162;SAP=354.789;SAR=0;SRF=102;SRP=224.5;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:63:21,42:21:807:42:1584:-123.861,0,-53.9897 0/1:82:37,45:37:1420:45:1711:-129.566,0,-103.396 0/1:86:34,52:34:1288:52:1981:-152.639,0,-90.3233 0/1:33:10,23:10:371:23:877:-69.3167,0,-23.8017 dDocent_Contig_3201 98 . N A 188.065 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=9;CIGAR=1X;DP=9;DPB=9;DPRA=0;EPP=22.5536;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=201;QR=0;RO=0;RPL=9;RPP=22.5536;RPPR=0;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1:0,1:0:0:1:18:-1.79997,-0.30103,0 ./.:.:.:.:.:.:.:. 1/1:8:0,8:0:0:8:183:-16.6978,-2.40824,0 ./.:.:.:.:.:.:.:. dDocent_Contig_3202 20 . G C 253.761 . AB=0.428571;ABP=3.94093;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1M2I1M1X2M1X;DP=80;DPB=83;DPRA=1.0678;EPP=22.5536;EPPR=157.185;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=357;QR=2777;RO=71;RPL=0;RPP=22.5536;RPPR=157.185;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=71;SRP=157.185;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:21:12,9:12:467:9:357:-26.172,0,-36.0578 0|0:22:22,0:22:855:0:0:0,-6.62266,-77.2636 0|0:26:26,0:26:1023:0:0:0,-7.82678,-92.3714 0|0:11:11,0:11:432:0:0:0,-3.31133,-39.2352 dDocent_Contig_3203 116 . T C 12675.8 . AB=0.610526;ABP=33.2509;AC=6;AF=0.75;AN=8;AO=468;CIGAR=1X3M1X;DP=599;DPB=599;DPRA=0;EPP=1019.26;EPPR=283.13;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=15676;QR=4322;RO=129;RPL=0;RPP=1019.26;RPPR=283.13;RPR=468;RUN=1;SAF=0;SAP=1019.26;SAR=468;SRF=0;SRP=283.13;SRR=129;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:177:15,162:15:497:162:5406:-441.663,-8.23511,0 0|1:137:73,63:73:2463:63:2148:-152.316,0,-180.653 0|1:148:37,111:37:1242:111:3742:-292.45,0,-67.5257 1|1:137:4,132:4:120:132:4380:-383.341,-29.9994,0 dDocent_Contig_3204 23 . A T 522.419 . AB=0.187919;ABP=129.058;AC=4;AF=0.5;AN=8;AO=28;CIGAR=2M1X10M1X;DP=149;DPB=149.286;DPRA=0;EPP=63.8115;EPPR=248.461;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0.982906;PAO=0;PQA=0;PQR=0;PRO=0;QA=1109;QR=4576;RO=117;RPL=0;RPP=63.8115;RPPR=257.073;RPR=28;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=116;SRP=248.461;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:49:39,6,4:39:1527:6,4:244,163:-8.38582,0,-123.735,-6.67834,-112.093,-131.017 0|1:49:43,6,0:43:1685:6,0:237,0:-6.95253,0,-137.14,-19.8968,-138.946,-158.449 0|1:29:20,9,0:20:788:9,0:353,0:-23.397,0,-62.5131,-29.4176,-65.2223,-94.2476 0|1:22:15,7,0:15:576:7,0:275,0:-18.4963,0,-45.5559,-23.0117,-47.6631,-70.2851 dDocent_Contig_3205 21 . T C 18589.4 . AB=0.859031;ABP=257.168;AC=7;AF=0.875;AN=8;AO=562;CIGAR=1X1M1X;DP=616;DPB=616;DPRA=0;EPP=1223.38;EPPR=118.098;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=22277;QR=2091;RO=53;RPL=0;RPP=1223.38;RPPR=118.098;RPR=562;RUN=1;SAF=562;SAP=1223.38;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:227:32,195:32:1256:195:7753:-629.076,0,-44.9806 1|1:147:8,139:8:324:139:5506:-465.867,-14.722,0 1|1:173:12,160:12:471:160:6353:-528.804,-9.43844,0 1|1:69:1,68:1:40:68:2665:-235.991,-16.7754,0 dDocent_Contig_3206 16 . G C 4802.28 . AB=0.647059;ABP=47.7171;AC=4;AF=0.5;AN=8;AO=154;CIGAR=1X;DP=238;DPB=238;DPRA=0;EPP=337.417;EPPR=185.414;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6177;QR=3331;RO=84;RPL=0;RPP=337.417;RPPR=185.414;RPR=154;RUN=1;SAF=154;SAP=337.417;SAR=0;SRF=84;SRP=185.414;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:65:13,52:13:526:52:2099:-169.519,0,-28.1198 0/1:68:44,24:44:1744:24:936:-64.0604,0,-136.712 0/1:55:19,36:19:746:36:1460:-115.086,0,-50.9086 0/1:50:8,42:8:315:42:1682:-136.553,0,-13.6616 dDocent_Contig_3207 14 . T G 4452.62 . AB=0.48503;ABP=3.33537;AC=5;AF=0.625;AN=8;AO=141;CIGAR=1X;DP=229;DPB=229;DPRA=0;EPP=309.188;EPPR=194.1;GTI=0;LEN=1;MEANALT=1;MQM=59.9574;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5620;QR=3524;RO=88;RPL=0;RPP=309.188;RPPR=194.1;RPR=141;RUN=1;SAF=141;SAP=309.188;SAR=0;SRF=88;SRP=194.1;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:90:62,28:62:2480:28:1120:-73.9864,0,-196.245 1/1:62:2,60:2:81:60:2386:-207.208,-10.9781,0 0/1:45:5,40:5:205:40:1585:-129.336,0,-5.28866 0/1:32:19,13:19:758:13:529:-38.3237,0,-58.908 dDocent_Contig_3208 209 . N G 150.27 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=155;QR=0;RO=0;RPL=4;RPP=11.6962;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:1:0,1:0:0:1:40:-3.99568,-0.30103,0 ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:115:-10.7249,-0.90309,0 dDocent_Contig_3209 35 . C A 4596.42 . AB=0.475219;ABP=4.83991;AC=4;AF=0.5;AN=8;AO=163;CIGAR=1X;DP=343;DPB=343;DPRA=0;EPP=356.96;EPPR=393.875;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6299;QR=7103;RO=180;RPL=0;RPP=356.96;RPPR=393.875;RPR=163;RUN=1;SAF=163;SAP=356.96;SAR=0;SRF=180;SRP=393.875;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:143:82,61:82:3217:61:2358:-169.349,0,-246.539 0/1:116:54,62:54:2133:62:2387:-180.084,0,-157.224 0/1:52:27,25:27:1074:25:980:-72.8413,0,-81.2986 0/1:32:17,15:17:679:15:574:-42.357,0,-51.8087 dDocent_Contig_3210 8 . G T 4819.85 . AB=0.0512445;ABP=1197.7;AC=0;AF=0;AN=8;AO=35;CIGAR=1X3M1X;DP=683;DPB=683;DPRA=0;EPP=79.0118;EPPR=846.565;GTI=0;LEN=1;MEANALT=5.5;MQM=54.2857;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.914286;PAIREDR=0.966346;PAO=0;PQA=0;PQR=0;PRO=0;QA=1351;QR=15838;RO=416;RPL=0;RPP=79.0118;RPPR=906.343;RPR=35;RUN=1;SAF=35;SAP=79.0118;SAR=0;SRF=409;SRP=846.565;SRR=7;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:222:123,14,73:123:4678:14,73:544,2914:-200.759,-195.519,-574.951,0,-341.392,-361.686 0|0:242:161,4,59:161:6183:4,59:157,2281:-138.862,-174.415,-680.733,0,-494.613,-489.765 0|0:128:81,9,33:81:3056:9,33:345,1256:-75.063,-71.1282,-318.87,0,-222.125,-240.507 0|0:91:51,8,28:51:1921:8,28:305,1085:-72.2909,-62.6226,-217.61,0,-132.373,-148.966 dDocent_Contig_3211 7 . T C 11955.6 . AB=0.754319;ABP=295.701;AC=4;AF=0.5;AN=8;AO=393;CIGAR=1X;DP=521;DPB=521;DPRA=0;EPP=856.399;EPPR=278.787;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.994911;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=15076;QR=4799;RO=127;RPL=0;RPP=856.399;RPPR=278.787;RPR=393;RUN=1;SAF=393;SAP=856.399;SAR=0;SRF=127;SRP=278.787;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:118:38,80:38:1449:80:3073:-241.205,0,-95.1642 0/1:206:45,160:45:1678:160:6174:-493.697,0,-89.394 0/1:121:28,93:28:1071:93:3552:-283.374,0,-60.2713 0/1:76:16,60:16:601:60:2277:-182.273,0,-31.5442 dDocent_Contig_3212 25 . T A 491.301 . AB=0.0555556;ABP=95.6598;AC=0;AF=0;AN=8;AO=3;CIGAR=1X1M1X;DP=117;DPB=117;DPRA=3.6;EPP=9.52472;EPPR=200.614;GTI=0;LEN=1;MEANALT=2;MQM=54;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=119;QR=3623;RO=91;RPL=0;RPP=9.52472;RPPR=200.614;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=91;SRP=200.614;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:54:35,3,16:35:1386:3,16:119,629:-41.1989,-41.9737,-155.146,0,-104.313,-109.257 0|0:35:31,0,4:31:1235:0,4:0,159:-4.15591,-13.4878,-115.184,0,-102.093,-100.889 0|0:15:15,0,0:15:606:0,0:0,0:0,-4.51545,-54.8773,-4.51545,-54.8773,-54.8773 0|0:13:10,0,3:10:396:0,3:0,121:-7.36681,-10.3771,-42.9634,0,-32.9875,-32.0844 dDocent_Contig_3213 30 . C T 694.454 . AB=0.307692;ABP=32.2417;AC=3;AF=0.375;AN=8;AO=30;CIGAR=1X;DP=120;DPB=120;DPRA=0;EPP=68.1545;EPPR=189.853;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.977778;PAO=0;PQA=0;PQR=0;PRO=0;QA=1185;QR=3506;RO=90;RPL=0;RPP=68.1545;RPPR=198.443;RPR=30;RUN=1;SAF=30;SAP=68.1545;SAR=0;SRF=89;SRP=189.853;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:29:27,2:27:1043:2:81:0,-1.04414,-86.4597 0/1:30:12,18:12:475:18:717:-55.8257,0,-34.0683 0/1:43:37,6:37:1430:6:224:-7.57116,0,-116.009 0/1:18:14,4:14:558:4:163:-9.63989,0,-45.1418 dDocent_Contig_3215 34 . G T 7123.65 . AB=0.750831;ABP=167.501;AC=4;AF=0.5;AN=8;AO=226;CIGAR=1X;DP=301;DPB=301;DPRA=0;EPP=493.763;EPPR=148.962;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.973333;PAO=0;PQA=0;PQR=0;PRO=0;QA=8970;QR=2947;RO=75;RPL=0;RPP=493.763;RPPR=165.871;RPR=226;RUN=1;SAF=226;SAP=493.763;SAR=0;SRF=73;SRP=148.962;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:92:39,53:39:1571:53:2096:-161.119,0,-113.931 0/1:100:18,82:18:702:82:3232:-260.843,0,-33.4009 0/1:77:11,66:11:429:66:2636:-214.192,0,-15.7784 0/1:32:7,25:7:245:25:1006:-81.201,0,-12.7502 dDocent_Contig_3216 56 . C T 110.343 . AB=0.181818;ABP=32.0291;AC=1;AF=0.125;AN=8;AO=12;CIGAR=1X;DP=366;DPB=366;DPRA=0;EPP=29.068;EPPR=771.712;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=481;QR=13982;RO=354;RPL=12;RPP=29.068;RPPR=771.712;RPR=0;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=354;SRP=771.712;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:95:93,2:93:3725:2:80:0,-21.0061,-327.668 0/0:147:145,2:145:5724:2:78:0,-36.8481,-507.583 0/0:91:89,2:89:3525:2:82:0,-19.6141,-309.516 0/1:33:27,6:27:1008:6:241:-12.1312,0,-81.066 dDocent_Contig_3217 15 . C T 35548.9 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=1094;CIGAR=1X;DP=1124;DPB=1124;DPRA=0;EPP=2378.6;EPPR=65.983;GTI=0;LEN=1;MEANALT=1.25;MQM=58.7806;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.952468;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=40979;QR=1164;RO=29;RPL=0;RPP=2378.6;RPPR=65.983;RPR=1094;RUN=1;SAF=1094;SAP=2378.6;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:315:6,309:6:245:309:11622:-1017.46,-72.395,0 1/1:286:0,286:0:0:286:10624:-949.578,-86.0946,0 1/1:306:6,300:6:238:300:11134:-972.922,-70.3214,0 1/1:217:17,199:17:681:199:7599:-614.325,-3.8004,0 dDocent_Contig_3219 13 . T G 1982.59 . AB=0.201172;ABP=400.135;AC=3;AF=0.375;AN=8;AO=105;CIGAR=1X;DP=652;DPB=652;DPRA=0;EPP=231.015;EPPR=1190.81;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4025;QR=21259;RO=547;RPL=0;RPP=231.015;RPPR=1190.81;RPR=105;RUN=1;SAF=105;SAP=231.015;SAR=0;SRF=547;SRP=1190.81;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:151:128,23:128:4930:23:875:-33.6113,0,-398.192 0/1:174:119,55:119:4651:55:2111:-137.823,0,-366.175 0/1:187:162,25:162:6288:25:960:-30.4168,0,-509.437 0/0:140:138,2:138:5390:2:79:0,-34.6466,-477.502 dDocent_Contig_3221 91 . T C 9162.35 . AB=0.791367;ABP=208.004;AC=5;AF=0.625;AN=8;AO=330;CIGAR=1X;DP=388;DPB=388;DPRA=0;EPP=719.596;EPPR=128.956;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.99697;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=11139;QR=1954;RO=58;RPL=330;RPP=719.596;RPPR=128.956;RPR=0;RUN=1;SAF=330;SAP=719.596;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:110:0,110:0:0:110:3673:-330.793,-33.1133,0 0/1:72:22,50:22:748:50:1652:-127.287,0,-45.9633 0/1:110:21,89:21:706:89:3022:-239.113,0,-30.7418 0/1:96:15,81:15:500:81:2792:-222.634,0,-16.4197 dDocent_Contig_3222 125 . T G 4374.45 . AB=0.759494;ABP=49.2159;AC=6;AF=0.75;AN=8;AO=154;CIGAR=1X;DP=173;DPB=173;DPRA=0;EPP=337.417;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5136;QR=556;RO=19;RPL=0;RPP=337.417;RPPR=44.2683;RPR=154;RUN=1;SAF=0;SAP=337.417;SAR=154;SRF=0;SRP=44.2683;SRR=19;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:44:11,33:11:327:33:1071:-83.4382,0,-16.4736 1/1:39:0,39:0:0:39:1326:-119.639,-11.7402,0 1/1:55:0,55:0:0:55:1822:-164.255,-16.5567,0 0/1:35:8,27:8:229:27:917:-72.3058,0,-10.3541 dDocent_Contig_3223 11 . G A 353.231 . AB=0.118421;ABP=99.1265;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1M3D2M1X1M;DP=202;DPB=191.125;DPRA=1.33333;EPP=22.5536;EPPR=374.332;GTI=0;LEN=1;MEANALT=3;MQM=59.7778;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=344;QR=6529;RO=171;RPL=0;RPP=22.5536;RPPR=374.332;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=171;SRP=374.332;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:57:56,0,1:56:2146:0,1:0,37:0,-16.8577,-192.998,-13.4609,-189.971,-189.67 0|1:76:63,9,3:63:2408:9,3:344,104:-9.2781,0,-194.895,-19.7987,-189.154,-216.476 0|0:41:29,0,12:29:1111:0,12:0,412:-24.8348,-33.5646,-124.775,0,-91.5637,-87.9514 0|0:28:23,0,4:23:864:0,4:0,144:-4.80195,-11.7256,-82.5122,0,-70.765,-69.5609 dDocent_Contig_3224 1 . N G 75.0157 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=4.60517;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=79;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:79:-7.49724,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_3225 7 . C T 46.2559 . AB=0.1875;ABP=16.582;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=97;DPB=97;DPRA=1.25581;EPP=11.6962;EPPR=204.957;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=146;QR=3550;RO=93;RPL=0;RPP=11.6962;RPPR=204.957;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=93;SRP=204.957;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:38:37,1:37:1413:1:33:0,-8.14,-124.154 0/0:29:29,0:29:1124:0:0:0,-8.72987,-101.462 0/1:16:13,3:13:495:3:113:-5.72249,0,-40.0798 0/0:14:14,0:14:518:0:0:0,-4.21442,-46.9543 dDocent_Contig_3226 107 . N C 389.031 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=13;CIGAR=1X;DP=13;DPB=13;DPRA=0;EPP=31.2394;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=6.77626e-21;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=418;QR=0;RO=0;RPL=0;RPP=31.2394;RPPR=0;RPR=13;RUN=1;SAF=0;SAP=31.2394;SAR=13;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:8:0,8:0:0:8:273:-24.9029,-2.40824,0 ./.:.:.:.:.:.:.:. 1/1:1:0,1:0:0:1:14:-1.39999,-0.30103,0 1/1:4:0,4:0:0:4:131:-12.1142,-1.20412,0 dDocent_Contig_3227 1 . N G 155.071 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=5;CIGAR=1X;DP=5;DPB=5;DPRA=0;EPP=13.8677;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=41.6;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=183;QR=0;RO=0;RPL=0;RPP=13.8677;RPPR=0;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:103:-7.6158,-0.90309,0 1/1:2:0,2:0:0:2:80:-7.58703,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_3230 76 . T C 3418.67 . AB=0.608333;ABP=15.2429;AC=5;AF=0.625;AN=8;AO=126;CIGAR=1X;DP=177;DPB=177;DPRA=0;EPP=276.616;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4359;QR=1793;RO=51;RPL=126;RPP=276.616;RPPR=113.755;RPR=0;RUN=1;SAF=126;SAP=276.616;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:57:4,53:4:129:53:1808:-151.069,-5.23105,0 0/1:54:13,41:13:463:41:1454:-114.9,0,-25.7516 0/1:42:18,24:18:640:24:843:-63.5461,0,-45.2863 0/1:24:16,8:16:561:8:254:-15.9434,0,-43.5945 dDocent_Contig_3231 22 . G C 144.783 . AB=0.155172;ABP=62.913;AC=1;AF=0.125;AN=8;AO=14;CIGAR=1X;DP=190;DPB=190;DPRA=0;EPP=33.4109;EPPR=385.189;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=0.971591;PAO=0;PQA=0;PQR=0;PRO=0;QA=549;QR=7016;RO=176;RPL=0;RPP=33.4109;RPPR=385.189;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=176;SRP=385.189;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:54:52,2:52:2097:2:82:0,-8.47594,-181.127 0/0:55:54,1:54:2133:1:40:0,-12.561,-188.159 0/1:58:49,9:49:1938:9:363:-15.5745,0,-157.163 0/0:23:21,2:21:848:2:64:0,-0.845136,-70.5522 dDocent_Contig_3232 24 . T C 34767 . AB=0.878378;ABP=555.151;AC=6;AF=0.75;AN=8;AO=1041;CIGAR=1X;DP=1130;DPB=1130;DPRA=0;EPP=2263.51;EPPR=196.271;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=41568;QR=3558;RO=89;RPL=0;RPP=2263.51;RPPR=196.271;RPR=1041;RUN=1;SAF=1041;SAP=2263.51;SAR=0;SRF=89;SRP=196.271;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:353:28,325:28:1119:325:13020:-1069.82,-5.26908,0 1/1:333:7,326:7:271:326:13076:-1151.07,-75.4938,0 0/1:267:33,234:33:1326:234:9253:-751.834,0,-39.2252 0/1:177:21,156:21:842:156:6219:-506.167,0,-22.8106 dDocent_Contig_3234 21 . T G 219.547 . AB=0.227273;ABP=31.4368;AC=1;AF=0.125;AN=8;AO=24;CIGAR=1X;DP=310;DPB=310;DPRA=0;EPP=55.1256;EPPR=624.051;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=949;QR=10689;RO=286;RPL=0;RPP=55.1256;RPPR=624.051;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=286;SRP=624.051;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:44:34,10:34:1272:10:396:-22.7506,0,-101.528 0/0:77:74,3:74:2732:3:120:0,-11.992,-234.887 0/0:107:99,8:99:3739:8:314:0,-3.58868,-307.995 0/0:82:79,3:79:2946:3:119:0,-13.5894,-254.215 dDocent_Contig_3235 150 . G T 2380.76 . AB=0.474286;ABP=4.01538;AC=4;AF=0.5;AN=8;AO=83;CIGAR=1X;DP=175;DPB=175;DPRA=0;EPP=183.243;EPPR=202.786;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3272;QR=3608;RO=92;RPL=0;RPP=183.243;RPPR=202.786;RPR=83;RUN=1;SAF=0;SAP=183.243;SAR=83;SRF=0;SRP=202.786;SRR=92;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:56:35,21:35:1361:21:811:-56.448,0,-105.883 0/1:64:31,33:31:1222:33:1300:-98.0024,0,-90.9873 0/1:42:22,20:22:870:20:801:-59.7654,0,-65.9649 0/1:13:4,9:4:155:9:360:-28.8495,0,-10.4115 dDocent_Contig_3236 129 . T A 30.578 . AB=0.15;ABP=24.2907;AC=2;AF=0.25;AN=8;AO=3;CIGAR=1X3M1X2M1X;DP=43;DPB=43;DPRA=0.869565;EPP=9.52472;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=117;QR=1553;RO=40;RPL=0;RPP=9.52472;RPPR=89.8692;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=89.8692;SRR=40;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:9:8,1:8:312:1:39:-1.18729,0,-25.7341 0|0:15:15,0:15:582:0:0:0,-4.51545,-52.7194 0|0:8:8,0:8:312:0:0:0,-2.40824,-28.4443 0|1:11:9,2:9:347:2:78:-4.09214,0,-28.2775 dDocent_Contig_3237 29 . A C 20621.2 . AB=0.857143;ABP=406.284;AC=7;AF=0.875;AN=8;AO=620;CIGAR=1X1M;DP=698;DPB=698;DPRA=0;EPP=1349.32;EPPR=133.299;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=24566;QR=2328;RO=60;RPL=0;RPP=1349.32;RPPR=133.299;RPR=620;RUN=1;SAF=620;SAP=1349.32;SAR=0;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:232:18,0,213:18:685:0,213:0,8452:-698.278,-703.697,-759.878,-7.96452,-64.1194,0 0|1:226:34,0,192:34:1331:0,192:0,7620:-617.408,-627.643,-737.083,0,-109.832,-52.0343 1|1:138:2,15,120:2:78:15,120:597,4729:-431.179,-382.625,-384.521,-42.7514,0,-13.0387 1|1:102:6,1,95:6:234:1,95:41,3765:-317.453,-315.875,-334.808,-9.38026,-25.2109,0 dDocent_Contig_3238 22 . T C 4138.52 . AB=0.486111;ABP=3.49285;AC=4;AF=0.5;AN=8;AO=140;CIGAR=1X;DP=288;DPB=288;DPRA=0;EPP=307.016;EPPR=324.388;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5606;QR=5941;RO=148;RPL=0;RPP=307.016;RPPR=324.388;RPR=140;RUN=1;SAF=140;SAP=307.016;SAR=0;SRF=148;SRP=324.388;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:80:42,38:42:1671:38:1519:-112.865,0,-126.532 0/1:89:59,30:59:2367:30:1178:-79.5002,0,-186.389 0/1:67:26,41:26:1046:41:1662:-129.629,0,-74.2586 0/1:52:21,31:21:857:31:1247:-96.8464,0,-61.7853 dDocent_Contig_3239 8 . G A 291.426 . AB=0.387097;ABP=6.44263;AC=1;AF=0.125;AN=8;AO=12;CIGAR=1X;DP=144;DPB=144;DPRA=0.823009;EPP=29.068;EPPR=289.645;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=436;QR=5075;RO=132;RPL=0;RPP=29.068;RPPR=289.645;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=132;SRP=289.645;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:55:55,0:55:2117:0:0:0,-16.5566,-190.759 0/0:38:38,0:38:1471:0:0:0,-11.4391,-132.665 0/1:31:19,12:19:721:12:436:-30.2395,0,-55.8838 0/0:20:20,0:20:766:0:0:0,-6.0206,-69.2675 dDocent_Contig_3241 29 . A G 14857 . AB=0.705797;ABP=256.84;AC=4;AF=0.5;AN=8;AO=487;CIGAR=1X;DP=690;DPB=690;DPRA=0;EPP=1043.22;EPPR=424.276;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.991786;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=18848;QR=7634;RO=194;RPL=0;RPP=1060.52;RPPR=424.276;RPR=487;RUN=1;SAF=485;SAP=1043.22;SAR=2;SRF=194;SRP=424.276;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:223:63,151:63:2466:151:5847:-461.245,0,-157.297 0/1:174:43,131:43:1686:131:5028:-400.046,0,-99.5893 0/1:173:62,111:62:2455:111:4318:-336.522,0,-169.016 0/1:120:26,94:26:1027:94:3655:-292.872,0,-56.6025 dDocent_Contig_3243 8 . G C 12350.3 . AB=0.65047;ABP=128.479;AC=4;AF=0.5;AN=8;AO=415;CIGAR=1X;DP=638;DPB=638;DPRA=0;EPP=904.171;EPPR=487.249;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.995181;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=15908;QR=8453;RO=223;RPL=0;RPP=904.171;RPPR=487.249;RPR=415;RUN=1;SAF=415;SAP=904.171;SAR=0;SRF=223;SRP=487.249;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:209:68,141:68:2572:141:5387:-421.908,0,-168.76 0/1:169:23,146:23:872:146:5624:-455.25,0,-27.9231 0/1:146:60,86:60:2273:86:3296:-252.827,0,-160.844 0/1:114:72,42:72:2736:42:1601:-110.034,0,-212.11 dDocent_Contig_3244 107 . N A 34.2435 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=4.60517;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=36;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:36:-3.41987,-0.60206,0 dDocent_Contig_3245 8 . G A 1935.13 . AB=0.0581395;ABP=1023.91;AC=0;AF=0;AN=8;AO=35;CIGAR=1X2M1X;DP=602;DPB=602;DPRA=0;EPP=79.0118;EPPR=938.915;GTI=0;LEN=1;MEANALT=4.75;MQM=46.8857;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.4;PAIREDR=0.993039;PAO=0;PQA=0;PQR=0;PRO=0;QA=1351;QR=16611;RO=431;RPL=0;RPP=79.0118;RPPR=938.915;RPR=35;RUN=1;SAF=35;SAP=79.0118;SAR=0;SRF=431;SRP=938.915;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:193:118,23,47:118:4568:23,47:885,1871:-118.542,-85.4734,-453.778,0,-306.653,-361.101 0|0:174:125,8,23:125:4842:8,23:311,875:-34.1168,-48.752,-444.104,0,-374.767,-390.84 0|0:153:129,1,14:129:4948:1,14:36,562:-7.49381,-43.4466,-449.251,0,-403.243,-401.91 0|0:82:59,3,17:59:2253:3,17:119,681:-38.3494,-46.7423,-230.667,0,-175.465,-179.718 dDocent_Contig_3246 21 . A G 201.734 . AB=0.133333;ABP=143.143;AC=1;AF=0.125;AN=8;AO=34;CIGAR=1X;DP=563;DPB=563;DPRA=0.609715;EPP=76.8404;EPPR=1149.55;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1345;QR=20736;RO=528;RPL=0;RPP=76.8404;RPPR=1149.55;RPR=34;RUN=1;SAF=34;SAP=76.8404;SAR=0;SRF=528;SRP=1149.55;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:163:151,12:151:5902:12:477:0,-5.78602,-487.736 0/0:199:198,0:198:7795:0:0:0,-59.6039,-700.82 0/1:120:104,16:104:4092:16:634:-21.2703,0,-332.168 0/0:81:75,6:75:2947:6:234:0,-2.95563,-243.903 dDocent_Contig_3247 8 . C G 1094.78 . AB=0.187919;ABP=255.105;AC=3;AF=0.375;AN=8;AO=56;CIGAR=1M1X1M1X1M;DP=298;DPB=294.4;DPRA=0;EPP=124.613;EPPR=448.162;GTI=0;LEN=1;MEANALT=2.75;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2099;QR=7826;RO=205;RPL=0;RPP=124.613;RPPR=448.162;RPR=56;RUN=1;SAF=56;SAP=124.613;SAR=0;SRF=205;SRP=448.162;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:61:44,8,0,9:44:1670:8,0,9:294,0,345:-15.0789,-4.29693,-138.824,-28.3242,-141.232,-165.265,0,-112.915,-136.948,-134.239 0|1:100:83,16,0,0:83:3170:16,0,0:609,0,0:-24.9374,0,-255.244,-49.9229,-260.06,-310.01,-49.9229,-260.06,-310.01,-310.01 0|1:106:66,22,15,2:66:2531:22,15,2:821,565,71:-47.3437,0,-201.129,-20.9094,-161.454,-224.145,-61.4278,-201.968,-222.877,-268.573 0|1:31:12,10,3,6:12:455:10,3,6:375,112,216:-27.1079,0,-34.3056,-21.5499,-28.1461,-57.9585,-13.1055,-19.7016,-41.2459,-48.609 dDocent_Contig_3250 46 . G C 293.593 . AB=0.129518;ABP=398.82;AC=2;AF=0.25;AN=8;AO=66;CIGAR=1X;DP=720;DPB=720;DPRA=0;EPP=121.454;EPPR=485.726;GTI=0;LEN=1;MEANALT=1.25;MQM=47.7576;MQMR=59.9847;NS=4;NUMALT=1;ODDS=0;PAIRED=0.757576;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2602;QR=25760;RO=653;RPL=63;RPP=121.454;RPPR=485.726;RPR=3;RUN=1;SAF=66;SAP=146.327;SAR=0;SRF=653;SRP=1420.98;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:288:272,15:272:10751:15:569:0,-50.2935,-930.405 0/1:224:198,26:198:7815:26:1032:-7.42229,0,-635.521 0/1:108:91,17:91:3580:17:685:-24.1308,0,-289.716 0/0:100:92,8:92:3614:8:316:0,-4.03508,-299.241 dDocent_Contig_3251 63 . T G 28950.6 . AB=0.7056;ABP=232.488;AC=6;AF=0.75;AN=8;AO=974;CIGAR=1X;DP=1173;DPB=1173;DPRA=0;EPP=2118.02;EPPR=435.133;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.696099;PAIREDR=0.678392;PAO=0;PQA=0;PQR=0;PRO=0;QA=34835;QR=7197;RO=199;RPL=566;RPP=58.666;RPPR=8.78271;RPR=408;RUN=1;SAF=566;SAP=58.666;SAR=408;SRF=111;SRP=8.78271;SRR=88;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:329:141,188:141:5091:188:6736:-507.209,0,-359.253 1/1:253:0,253:0:0:253:9079:-817.001,-76.1606,0 1/1:295:15,280:15:545:280:9927:-843.892,-39.419,0 0/1:296:43,253:43:1561:253:9093:-729.151,0,-51.664 dDocent_Contig_3252 13 . G A 85.9287 . AB=0.114286;ABP=138.696;AC=2;AF=0.25;AN=8;AO=12;CIGAR=1X;DP=242;DPB=242;DPRA=0.766423;EPP=29.068;EPPR=502.449;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.995652;PAO=0;PQA=0;PQR=0;PRO=0;QA=463;QR=8761;RO=230;RPL=0;RPP=29.068;RPPR=502.449;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=230;SRP=502.449;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:75:75,0:75:2858:0:0:0,-22.5772,-257.392 0/1:37:32,5:32:1209:5:182:-5.59436,0,-97.9672 0/1:68:61,7:61:2328:7:281:-5.1923,0,-189.263 0/0:62:62,0:62:2366:0:0:0,-18.6639,-213.15 dDocent_Contig_3253 18 . C A 3187.97 . AB=0.137931;ABP=69.053;AC=0;AF=0;AN=8;AO=8;CIGAR=2X;DP=163;DPB=163;DPRA=1.65714;EPP=20.3821;EPPR=118.098;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=304;QR=2042;RO=53;RPL=0;RPP=20.3821;RPPR=118.098;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:36:13,0,23:13:492:0,23:0,924:-72.6267,-76.5401,-116.855,0,-40.7014,-33.7777 0|0:34:12,0,22:12:485:0,22:0,877:-69.0023,-72.6146,-112.602,0,-40.3892,-33.7666 0|0:58:26,8,24:26:986:8,24:304,956:-70.9063,-53.8164,-132.227,0,-55.9072,-73.6039 0|0:35:2,0,33:2:79:0,33:0,1301:-109.854,-110.456,-116.957,-3.03842,-9.93399,0 dDocent_Contig_3254 17 . G T 94.8707 . AB=0.140351;ABP=67.0497;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=140;DPB=140;DPRA=2.06024;EPP=20.3821;EPPR=289.645;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=301;QR=5288;RO=132;RPL=0;RPP=20.3821;RPPR=289.645;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=132;SRP=289.645;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:57:49,8:49:1960:8:301:-10.2829,0,-159.435 0/0:49:49,0:49:1978:0:0:0,-14.7505,-178.209 0/0:25:25,0:25:992:0:0:0,-7.52575,-89.5749 0/0:9:9,0:9:358:0:0:0,-2.70927,-32.581 dDocent_Contig_3255 87 . G T 19708.5 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=1474;CIGAR=1X;DP=1755;DPB=1755;DPRA=0;EPP=3203.76;EPPR=548.05;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.812076;PAIREDR=0.824701;PAO=0;PQA=0;PQR=0;PRO=0;QA=24007;QR=2118;RO=251;RPL=1474;RPP=3203.76;RPPR=548.05;RPR=0;RUN=1;SAF=1474;SAP=3203.76;SAR=0;SRF=251;SRP=548.05;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:392:53,331:53:407:331:5383:-447.906,-78.9797,0 1/1:473:73,389:73:638:389:6387:-517.461,-81.6862,0 1/1:438:62,370:62:485:370:6141:-509.108,-86.388,0 1/1:452:63,384:63:588:384:6096:-495.769,-81.6305,0 dDocent_Contig_3256 13 . T C 14722.5 . AB=0.840102;ABP=398.858;AC=5;AF=0.625;AN=8;AO=450;CIGAR=1X;DP=522;DPB=522;DPRA=0;EPP=980.173;EPPR=159.356;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.972222;PAO=0;PQA=0;PQR=0;PRO=0;QA=18089;QR=2902;RO=72;RPL=0;RPP=980.173;RPPR=159.356;RPR=450;RUN=1;SAF=450;SAP=980.173;SAR=0;SRF=72;SRP=159.356;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:150:20,130:20:814:130:5274:-429.324,0,-28.4198 0/1:159:33,126:33:1323:126:5092:-410.254,0,-71.4619 1/1:128:9,119:9:365:119:4735:-392.848,-5.31678,0 0/1:85:10,75:10:400:75:2988:-243.418,0,-10.7709 dDocent_Contig_3257 98 . N T 14182.8 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=462;CIGAR=3X;DP=462;DPB=479;DPRA=0;EPP=1006.23;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=51;PQA=1642;PQR=0;PRO=0;QA=15746;QR=0;RO=0;RPL=462;RPP=1006.23;RPPR=0;RPR=0;RUN=1;SAF=462;SAP=1006.23;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:140:0,140:0:0:140:4757:-427.996,-42.1442,0 1|1:129:0,129:0:0:129:4429:-398.811,-38.8329,0 1|1:101:0,101:0:0:101:3441:-309.923,-30.404,0 1|1:92:0,92:0:0:92:3119:-280.953,-27.6948,0 dDocent_Contig_3258 66 . T A 4585.67 . AB=0.631579;ABP=43.0111;AC=4;AF=0.5;AN=8;AO=168;CIGAR=1M3I1X;DP=266;DPB=518;DPRA=0;EPP=367.818;EPPR=202.786;GTI=0;LEN=1;MEANALT=1.75;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6015;QR=3228;RO=92;RPL=168;RPP=367.818;RPPR=202.786;RPR=0;RUN=1;SAF=168;SAP=367.818;SAR=0;SRF=92;SRP=202.786;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:70:7,59:7:254:59:2129:-171.651,0,-2.98684 0|1:75:42,33:42:1475:33:1176:-83.5669,0,-110.458 0|1:87:36,49:36:1259:49:1728:-129.874,0,-87.6843 0|1:34:7,27:7:240:27:982:-78.461,0,-11.6997 dDocent_Contig_3259 8 . G A 138.316 . AB=0.163793;ABP=116.9;AC=2;AF=0.25;AN=8;AO=34;CIGAR=1X;DP=299;DPB=299;DPRA=0;EPP=76.8404;EPPR=578.45;GTI=0;LEN=1;MEANALT=1;MQM=32.7353;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=0.0882353;PAIREDR=0.992453;PAO=0;PQA=0;PQR=0;PRO=0;QA=1277;QR=10087;RO=265;RPL=0;RPP=76.8404;RPPR=578.45;RPR=34;RUN=1;SAF=34;SAP=76.8404;SAR=0;SRF=265;SRP=578.45;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:151:138,13:138:5251:13:476:0,-9.90217,-437.046 0/1:67:58,9:58:2190:9:343:-5.34654,0,-177.158 0/1:49:39,10:39:1493:10:380:-10.6789,0,-119.893 0/0:32:30,2:30:1153:2:78:0,-4.46736,-98.9031 dDocent_Contig_3261 106 . N A 907.35 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=29;CIGAR=2X;DP=29;DPB=29;DPRA=0;EPP=65.983;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=987;QR=0;RO=0;RPL=0;RPP=65.983;RPPR=0;RPR=29;RUN=1;SAF=0;SAP=65.983;SAR=29;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:9:0,9:0:0:9:314:-28.5967,-2.70927,0 1|1:12:0,12:0:0:12:416:-37.7722,-3.61236,0 1|1:4:0,4:0:0:4:118:-10.9109,-1.20412,0 1|1:4:0,4:0:0:4:139:-12.8526,-1.20412,0 dDocent_Contig_3262 72 . C T 1650.6 . AB=0.6;ABP=11.6962;AC=4;AF=0.5;AN=8;AO=60;CIGAR=1X;DP=100;DPB=100;DPRA=0;EPP=133.299;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.983333;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2209;QR=1462;RO=40;RPL=60;RPP=133.299;RPPR=89.8692;RPR=0;RUN=1;SAF=60;SAP=133.299;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:14,17:14:516:17:625:-47.2503,0,-37.4461 0/1:19:7,12:7:259:12:449:-35.0301,0,-17.9417 0/1:24:3,21:3:114:21:765:-61.9478,0,-3.4075 0/1:26:16,10:16:573:10:370:-25.8201,0,-44.0733 dDocent_Contig_3263 13 . A T 209.993 . AB=0.25641;ABP=23.1103;AC=2;AF=0.25;AN=8;AO=10;CIGAR=1X3M1X;DP=90;DPB=90;DPRA=0.764706;EPP=24.725;EPPR=176.728;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.925;PAO=0;PQA=0;PQR=0;PRO=0;QA=380;QR=3167;RO=80;RPL=0;RPP=24.725;RPPR=176.728;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=80;SRP=176.728;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:15:8,7:8:319:7:265:-19.6925,0,-24.5624 0|0:41:41,0:41:1632:0:0:0,-12.3422,-147.119 0|1:24:21,3:21:816:3:115:-3.49976,0,-66.5322 0|0:10:10,0:10:400:0:0:0,-3.0103,-36.3601 dDocent_Contig_3265 56 . A G 2575.06 . AB=0.488889;ABP=3.20332;AC=4;AF=0.5;AN=8;AO=88;CIGAR=1X;DP=180;DPB=180;DPRA=0;EPP=194.1;EPPR=202.786;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.988636;PAIREDR=0.956522;PAO=0;PQA=0;PQR=0;PRO=0;QA=3505;QR=3649;RO=92;RPL=88;RPP=194.1;RPPR=202.786;RPR=0;RUN=1;SAF=88;SAP=194.1;SAR=0;SRF=92;SRP=202.786;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:63:33,30:33:1321:30:1196:-88.9519,0,-100.19 0/1:59:34,25:34:1351:25:1006:-73.0741,0,-104.092 0/1:38:17,21:17:664:21:834:-63.9332,0,-48.6371 0/1:20:8,12:8:313:12:469:-36.537,0,-22.5119 dDocent_Contig_3266 64 . A C 8360.11 . AB=0.797297;ABP=173.442;AC=5;AF=0.625;AN=8;AO=252;CIGAR=1X;DP=297;DPB=297;DPRA=0;EPP=550.221;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=10065;QR=1794;RO=45;RPL=252;RPP=550.221;RPPR=100.727;RPR=0;RUN=1;SAF=252;SAP=550.221;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:75:0,75:0:0:75:2984:-268.654,-22.5773,0 0/1:122:29,93:29:1147:93:3716:-297.724,0,-66.79 0/1:45:11,34:11:446:34:1376:-110.549,0,-26.9493 0/1:55:5,50:5:201:50:1989:-162.644,0,-1.91387 dDocent_Contig_3267 26 . T C 4649.86 . AB=0.509804;ABP=3.26577;AC=4;AF=0.5;AN=8;AO=156;CIGAR=1X;DP=306;DPB=306;DPRA=0;EPP=341.76;EPPR=328.731;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6235;QR=6012;RO=150;RPL=0;RPP=341.76;RPPR=328.731;RPR=156;RUN=1;SAF=156;SAP=341.76;SAR=0;SRF=150;SRP=328.731;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:118:60,58:60:2404:58:2310:-172.526,0,-180.985 0/1:103:45,58:45:1808:58:2325:-178.399,0,-131.919 0/1:61:33,28:33:1321:28:1119:-82.6338,0,-100.785 0/1:24:12,12:12:479:12:481:-36.4166,0,-36.2325 dDocent_Contig_3268 64 . G A 6431.39 . AB=0.716216;ABP=63.1073;AC=5;AF=0.625;AN=8;AO=201;CIGAR=1X;DP=249;DPB=249;DPRA=0;EPP=439.476;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7898;QR=1844;RO=48;RPL=201;RPP=439.476;RPPR=107.241;RPR=0;RUN=1;SAF=201;SAP=439.476;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:72:30,42:30:1156:42:1657:-127.695,0,-82.6393 1/1:101:6,95:6:222:95:3779:-319.79,-10.0702,0 0/1:38:4,34:4:155:34:1303:-106.087,0,-2.88433 0/1:38:8,30:8:311:30:1159:-93.1543,0,-16.9098 dDocent_Contig_3271 7 . C A 2390.09 . AB=0.0555556;ABP=95.6598;AC=0;AF=0;AN=8;AO=3;CIGAR=1X1M1X1M1X2M1X;DP=539;DPB=539.5;DPRA=0;EPP=9.52472;EPPR=632.767;GTI=0;LEN=1;MEANALT=8;MQM=23;MQMR=59.983;NS=4;NUMALT=5;ODDS=0;PAIRED=0;PAIREDR=0.938776;PAO=0;PQA=0;PQR=0;PRO=0;QA=118;QR=11473;RO=294;RPL=0;RPP=9.52472;RPPR=641.423;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=293;SRP=632.767;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:195:105,0,10,39,10,8:105:4076:0,10,39,10,8:0,380,1506,389,305:-91.5413,-123.149,-458.054,-92.0555,-426.96,-423.95,0,-334.912,-303.819,-323.171,-91.1824,-426.088,-394.995,-302.946,-423.078,-98.1281,-433.033,-401.94,-309.891,-401.067,-430.625 0|0:187:101,0,6,40,3,9:101:3955:0,6,40,3,9:0,225,1478,121,343:-88.5677,-118.972,-444.199,-100.542,-425.771,-423.965,0,-325.232,-306.804,-313.191,-108.996,-434.225,-415.796,-315.257,-433.322,-90.8337,-416.063,-397.635,-297.096,-406.089,-413.354 0|0:103:60,0,6,17,0,8:60:2348:0,6,17,0,8:0,232,651,0,296:-35.0878,-53.1496,-246.229,-34.0882,-227.172,-225.366,0,-193.095,-174.038,-187.977,-53.1496,-246.229,-227.172,-193.095,-246.229,-28.9333,-222.016,-202.959,-168.882,-222.016,-219.608 0|0:54:28,3,3,12,0,0:28:1094:3,3,12,0,0:118,116,454,0,0:-28.802,-31.9681,-121.006,-27.6993,-112.381,-116.749,0,-84.695,-80.4345,-86.3512,-37.2308,-121.909,-117.652,-89.9636,-127.181,-37.2308,-121.909,-117.652,-89.9636,-127.181,-127.181 dDocent_Contig_3272 170 . T C 351.852 . AB=0.152778;ABP=153.807;AC=1;AF=0.125;AN=8;AO=22;CIGAR=1X;DP=300;DPB=300;DPRA=2.76923;EPP=50.7827;EPPR=606.68;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=878;QR=10731;RO=278;RPL=22;RPP=50.7827;RPPR=606.68;RPR=0;RUN=1;SAF=0;SAP=50.7827;SAR=22;SRF=0;SRP=606.68;SRR=278;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:144:122,22:122:4737:22:878:-35.9811,0,-382.918 0/0:63:63,0:63:2434:0:0:0,-18.9649,-219.215 0/0:43:43,0:43:1630:0:0:0,-12.9443,-146.93 0/0:50:50,0:50:1930:0:0:0,-15.0515,-173.902 dDocent_Contig_3273 27 . T A 141.2 . AB=0.2;ABP=30.3709;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=114;DPB=114;DPRA=1.32911;EPP=18.2106;EPPR=235.358;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=282;QR=4139;RO=107;RPL=0;RPP=18.2106;RPPR=235.358;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=107;SRP=235.358;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:19:19,0:19:747:0:0:0,-5.71957,-67.5554 0/1:35:28,7:28:1112:7:282:-15.2169,0,-89.8366 0/0:40:40,0:40:1529:0:0:0,-12.0412,-137.872 0/0:20:20,0:20:751:0:0:0,-6.0206,-67.9037 dDocent_Contig_3274 173 . G A 272.777 . AB=0.189189;ABP=65.1027;AC=1;AF=0.125;AN=8;AO=17;CIGAR=1X;DP=228;DPB=228;DPRA=2.2;EPP=39.9253;EPPR=461.191;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=681;QR=8413;RO=211;RPL=17;RPP=39.9253;RPPR=461.191;RPR=0;RUN=1;SAF=0;SAP=39.9253;SAR=17;SRF=0;SRP=461.191;SRR=211;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:76:75,1:75:2994:1:41:0,-18.7837,-265.437 0/1:74:60,14:60:2359:14:559:-28.3746,0,-190.176 0/0:48:46,2:46:1852:2:81:0,-6.76371,-159.195 0/0:30:30,0:30:1208:0:0:0,-9.0309,-108.993 dDocent_Contig_3275 56 . T C 7104.37 . AB=0.690821;ABP=68.4797;AC=5;AF=0.625;AN=8;AO=223;CIGAR=1X;DP=293;DPB=293;DPRA=0;EPP=487.249;EPPR=155.013;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=8833;QR=2635;RO=70;RPL=223;RPP=487.249;RPPR=155.013;RPR=0;RUN=1;SAF=223;SAP=487.249;SAR=0;SRF=70;SRP=155.013;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:104:33,71:33:1237:71:2789:-219.825,0,-80.3063 1/1:86:6,80:6:211:80:3217:-270.267,-6.56113,0 0/1:58:14,44:14:536:44:1730:-138.465,0,-31.1237 0/1:45:17,28:17:651:28:1097:-85.4723,0,-45.3791 dDocent_Contig_3276 107 . N G 38.8088 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=40;MQMR=0;NS=1;NUMALT=1;ODDS=4.60517;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=42;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:42:-3.8765,-0.60206,0 dDocent_Contig_3277 107 . N T 319.624 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=13;CIGAR=1X;DP=14;DPB=14;DPRA=0;EPP=31.2394;EPPR=0;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=0;NS=4;NUMALT=1;ODDS=2.1684e-19;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=337;QR=0;RO=0;RPL=0;RPP=31.2394;RPPR=0;RPR=13;RUN=1;SAF=0;SAP=31.2394;SAR=13;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,2:0:0:2:68:-6.28463,-0.60206,0 1/1:5:0,5:0:0:5:90:-8.27921,-1.50515,0 1/1:5:0,5:0:0:5:150:-13.797,-1.50515,0 1/1:1:0,1:0:0:1:29:-2.89966,-0.30103,0 dDocent_Contig_3278 10 . C T 3011.58 . AB=0.543478;ABP=6.03148;AC=4;AF=0.5;AN=8;AO=100;CIGAR=1X;DP=184;DPB=184;DPRA=0;EPP=220.158;EPPR=183.243;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4005;QR=3333;RO=83;RPL=0;RPP=220.158;RPPR=183.243;RPR=100;RUN=1;SAF=100;SAP=220.158;SAR=0;SRF=83;SRP=183.243;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:82:36,45:36:1451:45:1794:-136.89,0,-106.052 0/1:62:27,35:27:1091:35:1396:-107.23,0,-79.811 0/1:26:12,14:12:470:14:572:-43.9948,0,-34.816 0/1:14:8,6:8:321:6:243:-18.0335,0,-25.043 dDocent_Contig_3279 61 . G A 7054.64 . AB=0.765957;ABP=118.514;AC=5;AF=0.625;AN=8;AO=226;CIGAR=1X;DP=270;DPB=270;DPRA=0;EPP=493.763;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=0.986726;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=8497;QR=1692;RO=44;RPL=226;RPP=493.763;RPPR=98.5551;RPR=0;RUN=1;SAF=226;SAP=493.763;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:97:26,71:26:1003:71:2643:-208.868,0,-61.3815 1/1:82:0,82:0:0:82:3063:-275.832,-24.6845,0 0/1:49:8,41:8:303:41:1567:-126.549,0,-12.867 0/1:42:10,32:10:386:32:1224:-97.8078,0,-22.4537 dDocent_Contig_3280 22 . C G 133.33 . AB=0.142857;ABP=88.3181;AC=2;AF=0.25;AN=8;AO=11;CIGAR=1X;DP=159;DPB=159;DPRA=0.939024;EPP=26.8965;EPPR=324.388;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.986486;PAO=0;PQA=0;PQR=0;PRO=0;QA=422;QR=5836;RO=148;RPL=0;RPP=26.8965;RPPR=324.388;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=148;SRP=324.388;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:68:68,0:68:2668:0:0:0,-20.47,-240.246 0/0:14:14,0:14:557:0:0:0,-4.21442,-50.4715 0/1:31:26,5:26:1023:5:188:-7.94636,0,-83.0342 0/1:46:40,6:40:1588:6:234:-7.58042,0,-129.309 dDocent_Contig_3281 13 . A G 61.7487 . AB=0.111111;ABP=85.7675;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=179;DPB=179;DPRA=0.772277;EPP=20.3821;EPPR=374.332;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=325;QR=6838;RO=171;RPL=0;RPP=20.3821;RPPR=374.332;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=171;SRP=374.332;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:63:56,7:56:2213:7:284:-6.9691,0,-180.369 0/0:69:69,0:69:2772:0:0:0,-20.7711,-249.57 0/0:32:32,0:32:1285:0:0:0,-9.63296,-115.916 0/0:15:14,1:14:568:1:41:0,-0.420883,-47.3676 dDocent_Contig_3282 37 . T C 6726.57 . AB=0.801282;ABP=126.005;AC=5;AF=0.625;AN=8;AO=209;CIGAR=1X;DP=247;DPB=247;DPRA=0;EPP=456.848;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=8319;QR=1527;RO=38;RPL=0;RPP=456.848;RPPR=85.5263;RPR=209;RUN=1;SAF=209;SAP=456.848;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:91:7,84:7:287:84:3354:-275.705,-1.1885,0 0/1:73:16,57:16:647:57:2223:-178.245,0,-36.5878 0/1:45:5,40:5:199:40:1623:-132.747,0,-4.7415 0/1:38:10,28:10:394:28:1119:-89.5513,0,-24.3753 dDocent_Contig_3283 145 . A G 2234.72 . AB=0.632911;ABP=15.1321;AC=5;AF=0.625;AN=8;AO=82;CIGAR=1X;DP=111;DPB=111;DPRA=0;EPP=181.071;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2773;QR=964;RO=29;RPL=0;RPP=181.071;RPPR=65.983;RPR=82;RUN=1;SAF=0;SAP=181.071;SAR=82;SRF=0;SRP=65.983;SRR=29;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:38:16,22:16:540:22:759:-57.1908,0,-37.4808 1/1:32:0,32:0:0:32:1066:-96.2404,-9.63296,0 0/1:28:11,17:11:355:17:566:-42.8259,0,-23.8319 0/1:13:2,11:2:69:11:382:-30.8008,0,-2.63927 dDocent_Contig_3284 38 . A T 7064.14 . AB=0.857923;ABP=206.642;AC=5;AF=0.625;AN=8;AO=215;CIGAR=1X;DP=241;DPB=241;DPRA=0;EPP=469.877;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=8493;QR=995;RO=26;RPL=0;RPP=469.877;RPPR=59.4686;RPR=215;RUN=1;SAF=215;SAP=469.877;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:102:14,88:14:526:88:3502:-284.511,0,-16.9631 0/1:60:7,53:7:274:53:2082:-169.505,0,-6.96539 1/1:58:0,58:0:0:58:2276:-205.007,-17.4597,0 0/1:21:5,16:5:195:16:633:-50.9828,0,-11.5996 dDocent_Contig_3285 20 . A T 13787 . AB=0.851562;ABP=277.837;AC=6;AF=0.75;AN=8;AO=421;CIGAR=1X;DP=469;DPB=469;DPRA=0;EPP=917.2;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=59.905;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.997625;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=16634;QR=1924;RO=48;RPL=0;RPP=917.2;RPPR=107.241;RPR=421;RUN=1;SAF=421;SAP=917.2;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:152:25,127:25:992:127:4989:-403.147,0,-43.8216 1/1:101:5,96:5:202:96:3825:-325.69,-11.8425,0 1/1:112:5,107:5:203:107:4230:-360.215,-15.0623,0 0/1:104:13,91:13:527:91:3590:-291.838,0,-16.4691 dDocent_Contig_3286 17 . A G 1724.07 . AB=0.387879;ABP=21.0269;AC=3;AF=0.375;AN=8;AO=67;CIGAR=1X;DP=221;DPB=221;DPRA=0;EPP=148.499;EPPR=337.417;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.9545;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=0.993506;PAO=0;PQA=0;PQR=0;PRO=0;QA=2617;QR=5948;RO=154;RPL=0;RPP=148.499;RPPR=337.417;RPR=67;RUN=1;SAF=67;SAP=148.499;SAR=0;SRF=154;SRP=337.417;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:56:53,3:53:2042:3:120:0,-5.67037,-172.796 0/1:87:56,31:56:2143:31:1197:-81.8175,0,-166.878 0/1:47:22,25:22:863:25:984:-74.7089,0,-63.8243 0/1:31:23,8:23:900:8:316:-19.4727,0,-71.9711 dDocent_Contig_3288 29 . G C 103.105 . AB=0.142857;ABP=57.2971;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X;DP=183;DPB=183;DPRA=1.34615;EPP=22.5536;EPPR=380.846;GTI=0;LEN=1;MEANALT=1;MQM=51;MQMR=59.1724;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=0;PAIREDR=0.683908;PAO=0;PQA=0;PQR=0;PRO=0;QA=367;QR=6922;RO=174;RPL=0;RPP=22.5536;RPPR=380.846;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=174;SRP=380.846;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:49:42,7:42:1693:7:285:-11.1063,0,-137.842 0/0:56:54,2:54:2139:2:82:0,-9.30102,-185.134 0/0:54:54,0:54:2141:0:0:0,-16.2556,-192.872 0/0:24:24,0:24:949:0:0:0,-7.22472,-78.2202 dDocent_Contig_3289 12 . T C 535.923 . AB=0.164179;ABP=199.901;AC=3;AF=0.375;AN=8;AO=35;CIGAR=1X;DP=259;DPB=259;DPRA=0;EPP=70.5741;EPPR=480.773;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.9598;NS=4;NUMALT=1;ODDS=0;PAIRED=0.942857;PAIREDR=0.977679;PAO=0;PQA=0;PQR=0;PRO=0;QA=1370;QR=7945;RO=224;RPL=0;RPP=79.0118;RPPR=489.42;RPR=35;RUN=1;SAF=34;SAP=70.5741;SAR=1;SRF=223;SRP=480.773;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:93:78,15:78:2820:15:585:-24.9864,0,-226.017 0/1:53:44,9:44:1568:9:365:-17.2605,0,-125.443 0/1:55:46,9:46:1634:9:346:-14.9372,0,-130.775 0/0:58:56,2:56:1923:2:74:0,-10.4343,-166.303 dDocent_Contig_3290 40 . A G 4028.94 . AB=0.707965;ABP=87.9091;AC=4;AF=0.5;AN=8;AO=160;CIGAR=1X;DP=226;DPB=226;DPRA=0;EPP=350.446;EPPR=144.156;GTI=0;LEN=1;MEANALT=1.25;MQM=59.6437;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.225;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5274;QR=2227;RO=65;RPL=0;RPP=350.446;RPPR=144.156;RPR=160;RUN=1;SAF=0;SAP=350.446;SAR=160;SRF=0;SRP=144.156;SRR=65;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:109:36,73:36:1228:73:2432:-186.313,0,-78.009 0/1:48:16,31:16:558:31:978:-74.0095,0,-36.2487 0/1:25:5,20:5:175:20:645:-50.8259,0,-8.56794 0/1:44:8,36:8:266:36:1219:-96.7344,0,-11.0192 dDocent_Contig_3291 8 . C T 32.0283 . AB=0.121212;ABP=44.1367;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=138;DPB=138;DPRA=1.22581;EPP=16.0391;EPPR=289.645;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=231;QR=5063;RO=132;RPL=0;RPP=16.0391;RPPR=289.645;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=132;SRP=289.645;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:50:50,0:50:1907:0:0:0,-15.0515,-171.869 0/1:33:29,4:29:1124:4:154:-4.29947,0,-91.5279 0/0:43:41,2:41:1569:2:77:0,-5.63515,-134.17 0/0:12:12,0:12:463:0:0:0,-3.61236,-42.0215 dDocent_Contig_3292 31 . A T 75.6826 . AB=0.333333;ABP=5.18177;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=107;DPB=107;DPRA=0.507042;EPP=13.8677;EPPR=224.5;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=204;QR=4111;RO=102;RPL=0;RPP=13.8677;RPPR=224.5;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=102;SRP=224.5;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:27:25,2:25:1008:2:82:0,-0.348132,-83.2367 0/0:38:38,0:38:1528:0:0:0,-11.4391,-137.758 0/0:33:33,0:33:1332:0:0:0,-9.93399,-120.139 0/1:9:6,3:6:243:3:122:-8.66322,0,-19.5389 dDocent_Contig_3293 24 . T C 700.221 . AB=0.153846;ABP=30.0702;AC=0;AF=0;AN=8;AO=4;CIGAR=2M1X9M;DP=145;DPB=164.25;DPRA=0;EPP=11.6962;EPPR=207.129;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=4;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=0.93617;PAO=0;PQA=0;PQR=0;PRO=0;QA=140;QR=3711;RO=94;RPL=0;RPP=11.6962;RPPR=207.129;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=94;SRP=207.129;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:26:13,0,0,8,4:13:511:0,0,8,4:0,0,281,140:-18.9784,-22.8918,-64.9548,-22.8918,-64.9548,-64.9548,0,-42.0994,-42.0994,-39.6912,-11.5015,-53.5748,-53.5748,-30.7221,-52.3707 0|0:46:32,4,0,10,0:32:1258:4,0,10,0:151,0,397,0:-23.0633,-20.3255,-122.589,-32.6963,-123.793,-136.168,0,-91.1097,-103.484,-100.474,-32.6963,-123.793,-136.168,-103.484,-136.168 0|0:45:30,0,8,7,0:30:1194:0,8,7,0:0,299,282,0:-15.43,-24.4609,-122.782,0,-98.3101,-95.9019,-1.20377,-99.5369,-75.0656,-97.4297,-24.4609,-122.782,-98.3101,-99.5369,-122.782 0|0:28:19,0,1,7,0:19:748:0,1,7,0:0,40,282,0:-17.5333,-23.2529,-84.7798,-19.9578,-81.4846,-81.1835,0,-61.5344,-58.239,-59.4272,-23.2529,-84.7798,-81.4846,-61.5344,-84.7798 dDocent_Contig_3294 29 . G A 5816.19 . AB=0.478469;ABP=4.69345;AC=4;AF=0.5;AN=8;AO=200;CIGAR=1X;DP=418;DPB=418;DPRA=0;EPP=411.638;EPPR=476.391;GTI=0;LEN=1;MEANALT=1;MQM=59.025;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.91;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7939;QR=8599;RO=218;RPL=0;RPP=437.305;RPPR=476.391;RPR=200;RUN=1;SAF=197;SAP=411.638;SAR=3;SRF=218;SRP=476.391;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:157:85,72:85:3382:72:2852:-209.512,0,-257.169 0/1:111:52,59:52:2035:59:2338:-174.443,0,-149.929 0/1:100:58,42:58:2274:42:1674:-120.772,0,-174.73 0/1:50:23,27:23:908:27:1075:-81.8808,0,-66.9761 dDocent_Contig_3295 30 . T C 7456.34 . AB=0.361559;ABP=126.866;AC=4;AF=0.5;AN=8;AO=269;CIGAR=1X;DP=744;DPB=744;DPRA=0;EPP=587.136;EPPR=1034.46;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=10824;QR=18981;RO=475;RPL=0;RPP=587.136;RPPR=1034.46;RPR=269;RUN=1;SAF=269;SAP=587.136;SAR=0;SRF=475;SRP=1034.46;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:263:144,119:144:5753:119:4780:-350.92,0,-438.398 0/1:235:170,65:170:6821:65:2624:-165.537,0,-542.828 0/1:175:108,67:108:4303:67:2707:-191.056,0,-334.531 0/1:71:53,18:53:2104:18:713:-43.1103,0,-168.172 dDocent_Contig_3296 53 . T C 8020.4 . AB=0.804487;ABP=254.261;AC=4;AF=0.5;AN=8;AO=251;CIGAR=1X;DP=312;DPB=312;DPRA=0;EPP=548.05;EPPR=135.47;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=10004;QR=2411;RO=61;RPL=251;RPP=548.05;RPPR=135.47;RPR=0;RUN=1;SAF=251;SAP=548.05;SAR=0;SRF=61;SRP=135.47;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:114:14,100:14:540:100:3999:-325.572,0,-14.6195 0/1:70:35,35:35:1401:35:1379:-103.293,0,-105.274 0/1:88:8,80:8:319:80:3191:-260.769,0,-2.58481 0/1:40:4,36:4:151:36:1435:-117.357,0,-1.91193 dDocent_Contig_3297 41 . T C 84.6409 . AB=0.153846;ABP=43.6001;AC=2;AF=0.25;AN=8;AO=7;CIGAR=1X;DP=63;DPB=63;DPRA=2.66667;EPP=18.2106;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=281;QR=2243;RO=56;RPL=0;RPP=18.2106;RPPR=124.613;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:16,2:16:629:2:78:-1.98493,0,-51.5264 0/0:17:16,1:16:652:1:41:0,-1.02294,-54.9182 0/1:21:17,4:17:679:4:162:-8.64533,0,-55.1142 0/0:7:7,0:7:283:0:0:0,-2.10721,-25.843 dDocent_Contig_3298 113 . A G 2035.1 . AB=0.535484;ABP=4.70545;AC=4;AF=0.5;AN=8;AO=83;CIGAR=1X;DP=155;DPB=155;DPRA=0;EPP=183.243;EPPR=159.356;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2821;QR=2511;RO=72;RPL=0;RPP=183.243;RPPR=159.356;RPR=83;RUN=1;SAF=0;SAP=183.243;SAR=83;SRF=0;SRP=159.356;SRR=72;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:63:25,38:25:868:38:1294:-97.7944,0,-59.4691 0/1:43:27,16:27:951:16:540:-35.9764,0,-72.9603 0/1:32:16,16:16:556:16:546:-39.8308,0,-40.7339 0/1:17:4,13:4:136:13:441:-34.8982,0,-7.45771 dDocent_Contig_3299 15 . G A 73.715 . AB=0.127273;ABP=69.3784;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=206;DPB=206;DPRA=1.09272;EPP=18.2106;EPPR=147.32;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.773869;PAO=0;PQA=0;PQR=0;PRO=0;QA=274;QR=7744;RO=199;RPL=0;RPP=18.2106;RPPR=435.133;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=157;SRP=147.32;SRR=42;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:75:75,0:75:2963:0:0:0,-22.5772,-266.784 0/0:50:50,0:50:1923:0:0:0,-15.0515,-173.29 0/1:55:48,7:48:1871:7:274:-8.46841,0,-152.056 0/0:26:26,0:26:987:0:0:0,-7.82678,-89.1212 dDocent_Contig_3300 164 . A G 2940.27 . AB=0.620915;ABP=22.44;AC=4;AF=0.5;AN=8;AO=95;CIGAR=1X;DP=153;DPB=153;DPRA=0;EPP=200.706;EPPR=128.956;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3821;QR=2330;RO=58;RPL=94;RPP=200.706;RPPR=128.956;RPR=1;RUN=1;SAF=0;SAP=209.3;SAR=95;SRF=0;SRP=128.956;SRR=58;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:39:10,29:10:403:29:1160:-92.9405,0,-24.8888 0/1:55:14,41:14:557:41:1663:-133.332,0,-33.9157 0/1:42:26,16:26:1044:16:648:-46.0106,0,-81.6083 0/1:17:8,9:8:326:9:350:-26.7337,0,-24.5924 dDocent_Contig_3301 62 . T G 5463.87 . AB=0.558824;ABP=9.14152;AC=5;AF=0.625;AN=8;AO=184;CIGAR=1X;DP=275;DPB=275;DPRA=0;EPP=402.561;EPPR=198.443;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6817;QR=2917;RO=90;RPL=184;RPP=402.561;RPPR=198.443;RPR=0;RUN=1;SAF=184;SAP=402.561;SAR=0;SRF=90;SRP=198.443;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:71:33,38:33:1094:38:1435:-108.054,0,-77.3741 0/1:101:44,56:44:1423:56:2068:-156.173,0,-98.1628 1/1:71:1,70:1:34:70:2547:-226.028,-17.9742,0 0/1:32:12,20:12:366:20:767:-59.7243,0,-23.5964 dDocent_Contig_3302 8 . C A 273.31 . AB=0.333333;ABP=10.9724;AC=1;AF=0.125;AN=8;AO=11;CIGAR=1X;DP=120;DPB=120;DPRA=1.13793;EPP=26.8965;EPPR=239.701;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.990826;PAO=0;PQA=0;PQR=0;PRO=0;QA=419;QR=4209;RO=109;RPL=0;RPP=26.8965;RPPR=239.701;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=109;SRP=239.701;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:33:22,11:22:842:11:419:-28.1269,0,-66.167 0/0:55:55,0:55:2125:0:0:0,-16.5566,-191.476 0/0:25:25,0:25:970:0:0:0,-7.52575,-87.6133 0/0:7:7,0:7:272:0:0:0,-2.10721,-24.8472 dDocent_Contig_3303 56 . G A 48.1238 . AB=0.128205;ABP=49.8362;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=119;DPB=119;DPRA=1.4625;EPP=13.8677;EPPR=250.558;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=192;QR=4338;RO=114;RPL=5;RPP=13.8677;RPPR=250.558;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=114;SRP=250.558;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:35:35,0:35:1324:0:0:0,-10.536,-119.429 0/1:39:34,5:34:1261:5:192:-5.90927,0,-102.022 0/0:37:37,0:37:1434:0:0:0,-11.1381,-129.329 0/0:8:8,0:8:319:0:0:0,-2.40824,-29.0776 dDocent_Contig_3304 12 . C A 5806.64 . AB=0.156352;ABP=317.916;AC=6;AF=0.75;AN=8;AO=48;CIGAR=1X3M;DP=307;DPB=307;DPRA=0;EPP=107.241;EPPR=107.241;GTI=0;LEN=1;MEANALT=3.25;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1914;QR=1878;RO=48;RPL=0;RPP=107.241;RPPR=107.241;RPR=48;RUN=1;SAF=48;SAP=107.241;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:126:6,23,73,24:6:230:23,73,24:915,2890,957:-295.974,-222.444,-234.397,-59.9356,-3.47446,-56.8356,-218.97,-162.511,0,-230.622 1|1:86:11,11,47,16:11:438:11,47,16:425,1882,634:-167.844,-136.259,-169.015,-16.1122,-17.286,-38.0338,-118.976,-120.148,0,-150.228 0|1:55:23,11,18,3:23:897:11,18,3:439,720,122:-52.3837,-23.1519,-93.5677,0,-37.568,-68.3077,-49.2435,-86.815,-63.6619,-122.069 0|1:40:8,5,22,5:8:313:5,22,5:200,873,201:-69.4523,-55.3852,-79.6144,0,-9.25521,-19.1088,-55.2955,-64.5542,-9.16504,-79.5247 dDocent_Contig_3305 108 . T C 72.8834 . AB=0.307692;ABP=7.18621;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=83;DPB=83;DPRA=0.557143;EPP=11.6962;EPPR=174.557;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=133;QR=2757;RO=79;RPL=0;RPP=11.6962;RPPR=174.557;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=174.557;SRR=79;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:22:22,0:22:758:0:0:0,-6.62266,-68.5348 0/0:31:31,0:31:1083:0:0:0,-9.33193,-97.7787 0/0:17:17,0:17:596:0:0:0,-5.11751,-53.968 0/1:13:9,4:9:320:4:133:-8.38525,0,-25.2293 dDocent_Contig_3306 39 . C T 459.301 . AB=0.283582;ABP=30.2671;AC=2;AF=0.25;AN=8;AO=20;CIGAR=1X;DP=127;DPB=127;DPRA=1.17857;EPP=46.4397;EPPR=235.358;GTI=0;LEN=1;MEANALT=1;MQM=59.6;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.242991;PAO=0;PQA=0;PQR=0;PRO=0;QA=791;QR=4276;RO=107;RPL=0;RPP=46.4397;RPPR=235.358;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=107;SRP=235.358;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:28:28,0:28:1129:0:0:0,-8.42884,-101.89 0/1:36:30,6:30:1176:6:244:-11.5017,0,-95.2769 0/1:31:18,13:18:718:13:507:-36.6222,0,-55.6141 0/0:32:31,1:31:1253:1:40:0,-5.63728,-109.042 dDocent_Contig_3307 66 . C G 5582.16 . AB=0.226586;ABP=217.934;AC=3;AF=0.375;AN=8;AO=75;CIGAR=1X2M1X;DP=331;DPB=331;DPRA=0;EPP=165.871;EPPR=159.356;GTI=0;LEN=1;MEANALT=2.25;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.946667;PAIREDR=0.986111;PAO=0;PQA=0;PQR=0;PRO=0;QA=2610;QR=2531;RO=72;RPL=0;RPP=165.871;RPPR=159.356;RPR=75;RUN=1;SAF=0;SAP=165.871;SAR=75;SRF=0;SRP=159.356;SRR=72;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:106:21,8,77:21:745:8,77:281,2792:-221.647,-205.098,-263.387,0,-37.8311,-37.5221 1|0:95:20,31,43:20:688:31,43:1052,1583:-152.866,-73.5884,-120.123,-29.4312,0,-72.362 1|0:88:22,24,42:22:777:24,42:859,1515:-123.787,-60.3624,-116.412,-6.77661,0,-57.4077 1|0:42:9,12,21:9:321:12,21:418,735:-64.906,-33.6248,-56.1822,-7.81498,0,-27.6646 dDocent_Contig_3308 35 . G A 292.511 . AB=0.211268;ABP=54.4222;AC=2;AF=0.25;AN=8;AO=19;CIGAR=1X;DP=146;DPB=146;DPRA=0;EPP=44.2683;EPPR=278.787;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=743;QR=4923;RO=127;RPL=0;RPP=44.2683;RPPR=278.787;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=127;SRP=278.787;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:55:52,3:52:2061:3:123:0,-5.09186,-174.213 0/1:48:39,9:39:1500:9:360:-18.314,0,-120.791 0/1:23:17,6:17:644:6:219:-13.1309,0,-51.3581 0/0:20:19,1:19:718:1:41:0,-1.92603,-60.8392 dDocent_Contig_3309 17 . T C 36.726 . AB=0.2;ABP=10.8276;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X;DP=43;DPB=43;DPRA=0.909091;EPP=7.35324;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=1594;RO=41;RPL=0;RPP=7.35324;RPPR=92.0407;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:10:10,0:10:378:0:0:0,-3.0103,-34.3695 0/0:16:16,0:16:629:0:0:0,-4.81648,-56.9486 0/0:7:7,0:7:273:0:0:0,-2.10721,-24.9378 0/1:10:8,2:8:314:2:82:-4.76938,0,-25.6155 dDocent_Contig_3310 106 . N G 691.075 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=22;CIGAR=2X;DP=22;DPB=23.5;DPRA=0;EPP=50.7827;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=3;PQA=104;PQR=0;PRO=0;QA=750;QR=0;RO=0;RPL=0;RPP=50.7827;RPPR=0;RPR=22;RUN=1;SAF=0;SAP=50.7827;SAR=22;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:4:0,4:0:0:4:139:-12.8527,-1.20412,0 1|1:8:0,8:0:0:8:264:-24.0821,-2.40824,0 1|1:9:0,9:0:0:9:312:-28.0695,-2.70927,0 1|1:1:0,1:0:0:1:35:-3.49863,-0.30103,0 dDocent_Contig_3311 156 . C T 30.6851 . AB=0.3;ABP=9.95901;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X;DP=62;DPB=62;DPRA=2.61905;EPP=22.5536;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=18;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=353;QR=2033;RO=53;RPL=0;RPP=22.5536;RPPR=118.098;RPR=9;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=118.098;SRR=53;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:14,6:14:505:6:236:-3.86125,0,-39.7511 0/0:12:10,2:10:398:2:78:0,-0.198954,-32.7632 0/0:23:22,1:22:861:1:39:0,-5.12707,-76.0097 0/0:7:7,0:7:269:0:0:0,-2.10721,-24.5721 dDocent_Contig_3312 19 . G A 70.381 . AB=0.173913;ABP=24.253;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=170;DPB=170;DPRA=0.827957;EPP=20.3821;EPPR=354.789;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=326;QR=6466;RO=162;RPL=0;RPP=20.3821;RPPR=354.789;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=162;SRP=354.789;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:62:62,0:62:2465:0:0:0,-18.6639,-221.992 0/0:54:50,4:50:2010:4:163:0,-1.19719,-166.033 0/0:31:31,0:31:1237:0:0:0,-9.33193,-111.599 0/1:23:19,4:19:754:4:163:-8.13474,0,-61.2558 dDocent_Contig_3313 160 . A G 201.417 . AB=0.2;ABP=53.8228;AC=2;AF=0.25;AN=8;AO=14;CIGAR=1X;DP=180;DPB=180;DPRA=0.634409;EPP=33.4109;EPPR=363.475;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=480;QR=4873;RO=166;RPL=14;RPP=33.4109;RPPR=363.475;RPR=0;RUN=1;SAF=0;SAP=33.4109;SAR=14;SRF=0;SRP=363.475;SRR=166;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:53:52,1:52:1548:1:22:0,-13.7547,-137.386 0/0:62:62,0:62:1828:0:0:0,-18.6639,-164.774 0/1:39:32,7:32:893:7:238:-10.0079,0,-68.8914 0/1:26:20,6:20:604:6:220:-12.3276,0,-46.8229 dDocent_Contig_3314 98 . N G 415.068 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=14;CIGAR=1X;DP=14;DPB=14;DPRA=0;EPP=33.4109;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=4;NUMALT=1;ODDS=1.35525e-20;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=440;QR=0;RO=0;RPL=14;RPP=33.4109;RPPR=0;RPR=0;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:7:0,7:0:0:7:200:-18.2824,-2.10721,0 1/1:3:0,3:0:0:3:103:-9.61002,-0.90309,0 1/1:3:0,3:0:0:3:103:-9.61002,-0.90309,0 1/1:1:0,1:0:0:1:34:-3.39891,-0.30103,0 dDocent_Contig_3324 118 . T C 2799.73 . AB=0.618497;ABP=24.11;AC=4;AF=0.5;AN=8;AO=107;CIGAR=1X;DP=173;DPB=173;DPRA=0;EPP=235.358;EPPR=146.327;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3731;QR=2285;RO=66;RPL=0;RPP=235.358;RPPR=146.327;RPR=107;RUN=1;SAF=0;SAP=235.358;SAR=107;SRF=0;SRP=146.327;SRR=66;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:44:11,33:11:384:33:1151:-90.646,0,-21.6497 0/1:55:27,28:27:912:28:976:-71.5933,0,-65.8302 0/1:51:25,26:25:883:26:908:-66.6828,0,-64.4351 0/1:23:3,20:3:106:20:696:-56.038,0,-2.96541 dDocent_Contig_3325 18 . T A 60.8485 . AB=0.230769;ABP=11.1951;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=41;DPB=41;DPRA=1.39286;EPP=9.52472;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=0.973684;PAO=0;PQA=0;PQR=0;PRO=0;QA=119;QR=1537;RO=38;RPL=0;RPP=9.52472;RPPR=85.5263;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:12:12,0:12:487:0:0:0,-3.61236,-44.1815 0/1:13:10,3:10:409:3:119:-7.18162,0,-33.2572 0/0:11:11,0:11:437:0:0:0,-3.31133,-39.6806 0/0:5:5,0:5:204:0:0:0,-1.50515,-18.744 dDocent_Contig_3327 22 . A G 1594.23 . AB=0.41791;ABP=10.8535;AC=4;AF=0.5;AN=8;AO=56;CIGAR=1X;DP=134;DPB=134;DPRA=0;EPP=124.613;EPPR=170.214;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.922078;PAO=0;PQA=0;PQR=0;PRO=0;QA=2261;QR=3089;RO=77;RPL=0;RPP=124.613;RPPR=170.214;RPR=56;RUN=1;SAF=56;SAP=124.613;SAR=0;SRF=77;SRP=170.214;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:44:23,21:23:919:21:839:-62.5772,0,-69.7658 0/1:32:17,15:17:674:15:607:-45.334,0,-51.3543 0/1:34:20,14:20:809:14:573:-41.6763,0,-62.8904 0/1:24:17,6:17:687:6:242:-14.8251,0,-54.8258 dDocent_Contig_3328 107 . N T 25759.1 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=943;CIGAR=1X;DP=947;DPB=947;DPRA=0;EPP=2050.71;EPPR=0;GTI=0;LEN=1;MEANALT=1.75;MQM=60;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=0.996819;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=28610;QR=0;RO=0;RPL=0;RPP=2050.71;RPPR=0;RPR=943;RUN=1;SAF=0;SAP=2050.71;SAR=943;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:325:0,324:0:0:324:9974:-897.69,-97.5337,0 1/1:241:0,241:0:0:241:7190:-647.237,-72.5482,0 1/1:182:0,180:0:0:180:5483:-493.598,-54.1854,0 1/1:199:0,198:0:0:198:5963:-536.78,-59.6039,0 dDocent_Contig_3329 7 . C T 4885.03 . AB=0.122449;ABP=549.025;AC=0;AF=0;AN=8;AO=54;CIGAR=1X2M1X;DP=441;DPB=441;DPRA=0;EPP=120.27;EPPR=396.047;GTI=0;LEN=1;MEANALT=4;MQM=41.4815;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=0.759259;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2083;QR=6910;RO=181;RPL=0;RPP=120.27;RPPR=396.047;RPR=54;RUN=1;SAF=54;SAP=120.27;SAR=0;SRF=181;SRP=396.047;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:139:51,14,64,10:51:1949:14,64,10:533,2484,398:-188.807,-170.603,-326.307,0,-126.412,-140.702,-178.399,-304.761,-134.207,-335.31 0|0:138:60,19,48,11:60:2294:19,48,11:736,1848,443:-133.708,-111.5,-294.008,0,-148.001,-173.827,-116.476,-264.439,-152.984,-301.41 0|0:104:46,14,35,6:46:1757:14,35,6:541,1342,235:-96.3251,-68.5674,-208.52,0,-102.581,-133.65,-94.1512,-196.712,-128.164,-236.51 0|0:60:24,7,26,2:24:910:7,26,2:273,997,79:-74.6528,-59.5861,-132.1,0,-52.3618,-66.8279,-81.5983,-133.922,-74.3764,-155.607 dDocent_Contig_3331 107 . N A 1210.13 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=45;CIGAR=1X;DP=47;DPB=47;DPRA=0;EPP=100.727;EPPR=0;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1330;QR=0;RO=0;RPL=0;RPP=100.727;RPPR=0;RPR=45;RUN=1;SAF=0;SAP=100.727;SAR=45;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:11:0,11:0:0:11:336:-30.537,-3.31133,0 1/1:15:0,14:0:0:14:414:-37.4523,-4.21442,0 1/1:11:0,11:0:0:11:330:-29.9914,-3.31133,0 1/1:10:0,9:0:0:9:250:-22.4303,-2.70927,0 dDocent_Contig_3332 1 . N G 106.314 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.29832;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=114;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:114:-10.6292,-0.90309,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_3334 9 . T G 284.683 . AB=0.106383;ABP=66.2602;AC=0;AF=0;AN=8;AO=5;CIGAR=4M1X1M;DP=139;DPB=135.667;DPRA=1.74074;EPP=13.8677;EPPR=250.558;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=193;QR=4390;RO=114;RPL=0;RPP=13.8677;RPPR=250.558;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=114;SRP=250.558;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:45:40,4,0:40:1544:4,0:154,0:-0.599476,0,-125.597,-12.6407,-126.801,-139.446 0|0:47:31,11,5:31:1192:11,5:427,193:-25.7554,0,-94.5496,-19.2374,-82.0102,-115.592 0|0:27:26,1,0:26:1001:1,0:39,0:0,-4.23125,-86.5051,-7.82678,-86.8061,-90.0122 0|0:20:17,3,0:17:653:3,0:117,0:-4.88978,0,-53.0865,-10.0073,-53.9896,-63.6081 dDocent_Contig_3336 25 . G T 511.437 . AB=0.108911;ABP=137.19;AC=1;AF=0.125;AN=8;AO=11;CIGAR=7M1X5M;DP=304;DPB=301.923;DPRA=2.43373;EPP=26.8965;EPPR=576.279;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=436;QR=10385;RO=264;RPL=0;RPP=26.8965;RPPR=576.279;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=264;SRP=576.279;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:120:96,23,0:96:3773:23,0:881,0:-43.5601,0,-303.597,-72.459,-310.521,-382.804 0|1:101:87,0,11:87:3406:0,11:0,436:-9.7743,-35.9639,-316.028,0,-280.141,-276.83 0|0:57:57,0,0:57:2249:0,0:0,0:0,-17.1587,-202.599,-17.1587,-202.599,-202.599 0|0:26:24,2,0:24:957:2,0:81,0:0,-0.141046,-78.7514,-7.22472,-79.3535,-86.0331 dDocent_Contig_3337 8 . C A 551.321 . AB=0.134703;ABP=510.679;AC=2;AF=0.25;AN=8;AO=110;CIGAR=1X;DP=1116;DPB=1116;DPRA=0;EPP=233.265;EPPR=1402.78;GTI=0;LEN=1;MEANALT=2;MQM=38.2818;MQMR=51.3988;NS=4;NUMALT=1;ODDS=5.55112e-17;PAIRED=0;PAIREDR=0.639059;PAO=0;PQA=0;PQR=0;PRO=0;QA=4163;QR=37267;RO=978;RPL=0;RPP=241.872;RPPR=2126.71;RPR=110;RUN=1;SAF=109;SAP=233.265;SAR=1;SRF=886;SRP=1402.78;SRR=92;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:377:348,25:348:13279:25:961:0,-32.8349,-1041.43 0/1:258:209,40:209:7951:40:1531:-51.4294,0,-596.279 0/0:301:262,26:262:9930:26:964:0,-8.02536,-727.342 0/1:180:159,19:159:6107:19:707:-5.89651,0,-457.457 dDocent_Contig_3338 8 . T C 9697.13 . AB=0.649123;ABP=14.02;AC=7;AF=0.875;AN=8;AO=305;CIGAR=1X;DP=345;DPB=345;DPRA=0;EPP=665.309;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.97377;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=11753;QR=1532;RO=40;RPL=0;RPP=665.309;RPPR=89.8692;RPR=305;RUN=1;SAF=305;SAP=665.309;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:77:6,71:6:234:71:2751:-226.337,-1.74821,0 1/1:93:6,87:6:228:87:3366:-282.185,-7.11108,0 1/1:118:8,110:8:312:110:4232:-352.505,-7.07662,0 0/1:57:20,37:20:758:37:1404:-109.482,0,-51.3877 dDocent_Contig_3339 11 . A T 78.8775 . AB=0.129032;ABP=77.1206;AC=2;AF=0.25;AN=8;AO=9;CIGAR=1X;DP=127;DPB=127;DPRA=0.810811;EPP=22.5536;EPPR=259.244;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.991525;PAO=0;PQA=0;PQR=0;PRO=0;QA=352;QR=4718;RO=118;RPL=0;RPP=22.5536;RPPR=259.244;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=118;SRP=259.244;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:34:29,5:29:1152:5:189:-7.13483,0,-93.7292 0/1:28:25,3:25:999:3:122:-2.94365,0,-81.7764 0/0:37:37,0:37:1488:0:0:0,-11.1381,-134.165 0/0:28:27,1:27:1079:1:41:0,-4.33427,-93.3058 dDocent_Contig_3340 160 . A G 143.876 . AB=0.190476;ABP=37.9607;AC=3;AF=0.375;AN=8;AO=8;CIGAR=1X;DP=52;DPB=52;DPRA=1.4;EPP=20.3821;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=327;QR=1757;RO=44;RPL=8;RPP=20.3821;RPPR=98.5551;RPR=0;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=98.5551;SRR=44;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:15,2:15:606:2:81:-2.56822,0,-49.7605 0/1:11:8,3:8:324:3:123:-8.15346,0,-26.2181 0/0:10:10,0:10:381:0:0:0,-3.0103,-34.6368 0/1:14:11,3:11:446:3:123:-7.25037,0,-36.2812 dDocent_Contig_3341 113 . C T 240.636 . AB=0.423077;ABP=4.34659;AC=1;AF=0.125;AN=8;AO=12;CIGAR=1X;DP=131;DPB=131;DPRA=0.898551;EPP=29.068;EPPR=261.416;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=398;QR=3975;RO=119;RPL=0;RPP=29.068;RPPR=261.416;RPR=12;RUN=1;SAF=0;SAP=29.068;SAR=12;SRF=0;SRP=261.416;SRR=119;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:28:28,0:28:968:0:0:0,-8.42884,-87.4335 0/0:41:41,0:41:1349:0:0:0,-12.3422,-121.698 0/0:36:35,1:35:1145:1:35:0,-7.33845,-99.8416 0/1:26:15,11:15:513:11:363:-25.1605,0,-38.6689 dDocent_Contig_3342 53 . A G 577.162 . AB=0.276596;ABP=43.7601;AC=4;AF=0.5;AN=8;AO=26;CIGAR=1X;DP=94;DPB=94;DPRA=0;EPP=59.4686;EPPR=150.67;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=995;QR=2692;RO=68;RPL=26;RPP=59.4686;RPPR=150.67;RPR=0;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=68;SRP=150.67;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:43:35,8:35:1376:8:298:-14.2217,0,-111.156 0/1:23:18,5:18:725:5:194:-10.9066,0,-58.6517 0/1:18:9,9:9:356:9:339:-25.4381,0,-26.9828 0/1:10:6,4:6:235:4:164:-12.1396,0,-18.5097 dDocent_Contig_3343 118 . A G 213.114 . AB=0.220339;ABP=43.0905;AC=2;AF=0.25;AN=8;AO=14;CIGAR=1X;DP=110;DPB=110;DPRA=2.48718;EPP=33.4109;EPPR=211.472;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=486;QR=3327;RO=96;RPL=0;RPP=33.4109;RPPR=211.472;RPR=14;RUN=1;SAF=0;SAP=33.4109;SAR=14;SRF=0;SRP=211.472;SRR=96;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:38:37,1:37:1280:1:35:0,-7.94051,-112 0/1:33:24,9:24:816:9:314:-18.6639,0,-63.8169 0/1:26:22,4:22:770:4:137:-4.84128,0,-61.7948 0/0:13:13,0:13:461:0:0:0,-3.91339,-41.8264 dDocent_Contig_3344 28 . T G 331.079 . AB=0.52381;ABP=3.1137;AC=1;AF=0.125;AN=8;AO=11;CIGAR=1X;DP=51;DPB=51;DPRA=2.1;EPP=26.8965;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=443;QR=1551;RO=40;RPL=0;RPP=26.8965;RPPR=89.8692;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:10,11:10:377:11:443:-33.9038,0,-27.9577 0/0:13:13,0:13:509:0:0:0,-3.91339,-46.1554 0/0:8:8,0:8:307:0:0:0,-2.40824,-27.9898 0/0:9:9,0:9:358:0:0:0,-2.70927,-32.5832 dDocent_Contig_3345 107 . A G 150.854 . AB=0;ABP=0;AC=2;AF=0.25;AN=8;AO=4;CIGAR=1X;DP=24;DPB=24;DPRA=0.6;EPP=11.6962;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=160;QR=798;RO=20;RPL=0;RPP=11.6962;RPPR=46.4397;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=46.4397;SRR=20;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:7:7,0:7:277:0:0:0,-2.10721,-25.3001 1/1:4:0,4:0:0:4:160:-14.784,-1.20412,0 0/0:6:6,0:6:242:0:0:0,-1.80618,-22.1575 0/0:7:7,0:7:279:0:0:0,-2.10721,-25.4814 dDocent_Contig_3346 57 . C T 1765.2 . AB=0.666667;ABP=24.0012;AC=4;AF=0.5;AN=8;AO=58;CIGAR=1X;DP=87;DPB=87;DPRA=0;EPP=128.956;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=59.431;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2299;QR=1167;RO=29;RPL=58;RPP=128.956;RPPR=65.983;RPR=0;RUN=1;SAF=58;SAP=128.956;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:35:12,23:12:488:23:916:-71.6496,0,-33.7349 0/1:14:4,10:4:163:10:383:-30.6027,0,-10.844 0/1:22:4,18:4:156:18:720:-58.5026,0,-7.79378 0/1:16:9,7:9:360:7:280:-20.7551,0,-27.9464 dDocent_Contig_3347 8 . C G 73.0844 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=2;CIGAR=1X2M1X1M4I2M1I1M1X4M1I2M;DP=18;DPB=18.8;DPRA=0.857143;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=74;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:6:0,0:0:0:0:0:0,0,0 1|1:6:0,0:0:0:0:0:0,0,0 1|1:2:0,0:0:0:0:0:0,0,0 1|1:4:0,2:0:0:2:74:-6.69938,-0.60206,0 dDocent_Contig_3348 7 . C T 239.497 . AB=0.116592;ABP=287.746;AC=1;AF=0.125;AN=8;AO=52;CIGAR=1X;DP=713;DPB=713;DPRA=0;EPP=115.927;EPPR=1418.81;GTI=0;LEN=1;MEANALT=1.75;MQM=58.1154;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.673077;PAIREDR=0.958589;PAO=0;PQA=0;PQR=0;PRO=0;QA=1976;QR=24948;RO=652;RPL=0;RPP=115.927;RPPR=1418.81;RPR=52;RUN=1;SAF=52;SAP=115.927;SAR=0;SRF=652;SRP=1418.81;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:223:192,26:192:7375:26:1005:-24.7456,0,-597.589 0/0:259:243,16:243:9304:16:613:0,-22.8266,-781.926 0/0:146:138,7:138:5270:7:251:0,-21.1451,-451.411 0/0:85:79,3:79:2999:3:107:0,-15.0812,-260.09 dDocent_Contig_3349 9 . G A 34.4749 . AB=0.0625;ABP=56.2114;AC=0;AF=0;AN=8;AO=3;CIGAR=4M1X3M;DP=119;DPB=118.5;DPRA=1.16364;EPP=9.52472;EPPR=246.215;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=112;QR=4284;RO=112;RPL=0;RPP=9.52472;RPPR=246.215;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=112;SRP=246.215;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:36:36,0,0:36:1393:0,0:0,0:0,-10.8371,-125.652,-10.8371,-125.652,-125.652 0|0:32:26,4,2:26:986:4,2:151,77:-4.54425,0,-79.6333,-6.04615,-74.5146,-86.2883 0|0:32:31,0,1:31:1178:0,1:0,35:0,-9.33193,-105.966,-6.13433,-103.119,-102.818 0|0:19:19,0,0:19:727:0,0:0,0:0,-5.71957,-65.7598,-5.71957,-65.7598,-65.7598 dDocent_Contig_3350 98 . N A 298.591 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=10;CIGAR=1X;DP=10;DPB=10;DPRA=0;EPP=24.725;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=4;NUMALT=1;ODDS=1.35525e-20;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=310;QR=0;RO=0;RPL=10;RPP=24.725;RPPR=0;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:86:-8.02484,-0.90309,0 1/1:2:0,2:0:0:2:68:-6.45788,-0.60206,0 1/1:4:0,4:0:0:4:123:-11.375,-1.20412,0 1/1:1:0,1:0:0:1:33:-3.29913,-0.30103,0 dDocent_Contig_3351 76 . G A 41.8383 . AB=0.2;ABP=14.7363;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=93;DPB=93;DPRA=0.576923;EPP=9.52472;EPPR=198.443;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=105;QR=3063;RO=90;RPL=3;RPP=9.52472;RPPR=198.443;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=90;SRP=198.443;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:45:45,0:45:1585:0:0:0,-13.5463,-142.927 0/1:15:12,3:12:403:3:105:-5.28071,0,-32.0787 0/0:21:21,0:21:679:0:0:0,-6.32163,-61.414 0/0:12:12,0:12:396:0:0:0,-3.61236,-35.9584 dDocent_Contig_3352 8 . C G 77.5702 . AB=0.0888889;ABP=69.0713;AC=0;AF=0;AN=8;AO=7;CIGAR=1X1M1X;DP=215;DPB=215;DPRA=1.3587;EPP=18.2106;EPPR=406.904;GTI=0;LEN=1;MEANALT=3;MQM=34.5714;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=244;QR=7075;RO=186;RPL=0;RPP=18.2106;RPPR=406.904;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=186;SRP=406.904;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:45:34,4,7:34:1283:4,7:139,238:-8.15788,-7.69233,-111.676,0,-94.4928,-103.079 0|0:80:71,3,4:71:2710:3,4:105,132:0,-14.5098,-235.995,-10.6862,-226.229,-231.896 0|0:44:39,0,5:39:1473:0,5:0,163:-1.74688,-13.487,-134.26,0,-121.105,-119.6 0|0:46:42,0,3:42:1609:0,3:0,102:0,-12.6433,-144.722,-4.40661,-136.45,-135.547 dDocent_Contig_3354 41 . G A 7772.12 . AB=0.370886;ABP=117.4;AC=4;AF=0.5;AN=8;AO=293;CIGAR=1X;DP=790;DPB=790;DPRA=0;EPP=104.462;EPPR=939.623;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.996587;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=11328;QR=19425;RO=497;RPL=88;RPP=104.462;RPPR=939.623;RPR=205;RUN=1;SAF=293;SAP=639.252;SAR=0;SRF=497;SRP=1082.23;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:306:180,126:180:7061:126:4878:-346.844,0,-543.073 0/1:257:165,92:165:6465:92:3575:-244.449,0,-504.234 0/1:165:117,48:117:4566:48:1901:-121.634,0,-361.218 0/1:62:35,27:35:1333:27:974:-69.2759,0,-101.56 dDocent_Contig_3355 9 . T G 3679.98 . 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AB=0.194915;ABP=98.4079;AC=3;AF=0.375;AN=8;AO=24;CIGAR=1X;DP=134;DPB=134;DPRA=0;EPP=55.1256;EPPR=241.872;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.6;PAO=0;PQA=0;PQR=0;PRO=0;QA=930;QR=4314;RO=110;RPL=0;RPP=55.1256;RPPR=241.872;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=110;SRP=241.872;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:62:48,14:48:1895:14:527:-29.0898,0,-152.1 0/1:38:31,7:31:1219:7:283:-14.4039,0,-98.5488 0/1:18:16,2:16:627:2:80:-2.17304,0,-51.3446 0/0:16:15,1:15:573:1:40:0,-0.820801,-47.9074 dDocent_Contig_3357 150 . G A 195.09 . 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AB=0;ABP=0;AC=6;AF=1;AN=6;AO=7;CIGAR=1X;DP=7;DPB=7;DPRA=0;EPP=18.2106;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=6.77626e-21;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=266;QR=0;RO=0;RPL=0;RPP=18.2106;RPPR=0;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:4:0,4:0:0:4:148:-13.6783,-1.20412,0 ./.:.:.:.:.:.:.:. 1/1:1:0,1:0:0:1:40:-3.99568,-0.30103,0 1/1:2:0,2:0:0:2:78:-7.4033,-0.60206,0 dDocent_Contig_3374 9 . C A 130.769 . AB=0.147059;ABP=76.5849;AC=1;AF=0.125;AN=8;AO=14;CIGAR=1X;DP=222;DPB=222;DPRA=1.33684;EPP=33.4109;EPPR=452.505;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.980676;PAO=0;PQA=0;PQR=0;PRO=0;QA=537;QR=7942;RO=207;RPL=0;RPP=33.4109;RPPR=452.505;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=207;SRP=452.505;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:59:54,4:54:2073:4:156:0,-3.42416,-172.386 0/0:63:63,0:63:2389:0:0:0,-18.9649,-215.218 0/1:68:58,10:58:2240:10:381:-14.1738,0,-181.348 0/0:32:32,0:32:1240:0:0:0,-9.63296,-111.893 dDocent_Contig_3375 21 . T A 459.404 . AB=0.414634;ABP=5.60547;AC=2;AF=0.25;AN=8;AO=20;CIGAR=1X;DP=122;DPB=122;DPRA=0;EPP=46.4397;EPPR=224.5;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=779;QR=4094;RO=102;RPL=0;RPP=46.4397;RPPR=224.5;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=102;SRP=224.5;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:52:51,1:51:2044:1:36:0,-12.0553,-180.544 0/0:29:27,2:27:1085:2:79:0,-1.23263,-90.438 0/1:24:16,8:16:646:8:323:-22.2139,0,-51.2492 0/1:17:8,9:8:319:9:341:-25.9201,0,-23.9596 dDocent_Contig_3376 1 . N G 111.901 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.29832;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=120;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:120:-11.1879,-0.90309,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_3377 9 . C T 153.454 . AB=0.169492;ABP=58.9901;AC=2;AF=0.25;AN=8;AO=11;CIGAR=1X;DP=136;DPB=136;DPRA=0.674074;EPP=26.8965;EPPR=274.444;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.818182;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=423;QR=4775;RO=125;RPL=0;RPP=26.8965;RPPR=274.444;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=125;SRP=274.444;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:22,5:22:845:5:194:-9.70503,0,-68.2451 0/0:32:31,1:31:1189:1:39:0,-5.7364,-103.409 0/0:45:45,0:45:1712:0:0:0,-13.5463,-154.34 0/1:32:27,5:27:1029:5:190:-7.83421,0,-83.2843 dDocent_Contig_3378 38 . G C 8057.05 . AB=0.780186;ABP=223.257;AC=4;AF=0.5;AN=8;AO=252;CIGAR=1X;DP=323;DPB=323;DPRA=0;EPP=550.221;EPPR=157.185;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.996032;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=10082;QR=2815;RO=71;RPL=0;RPP=550.221;RPPR=157.185;RPR=252;RUN=1;SAF=252;SAP=550.221;SAR=0;SRF=71;SRP=157.185;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:105:19,86:19:772:86:3440:-278.038,0,-38.1912 0/1:105:25,80:25:987:80:3205:-256.908,0,-57.5195 0/1:57:12,45:12:482:45:1790:-144.152,0,-26.5726 0/1:56:15,41:15:574:41:1647:-131.597,0,-35.131 dDocent_Contig_3379 17 . C G 948.217 . AB=0.0694444;ABP=118.943;AC=0;AF=0;AN=8;AO=14;CIGAR=1X2M1X1M1X;DP=394;DPB=394;DPRA=0;EPP=33.4109;EPPR=665.309;GTI=0;LEN=1;MEANALT=4;MQM=24;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0.681967;PAO=0;PQA=0;PQR=0;PRO=0;QA=552;QR=11965;RO=305;RPL=0;RPP=33.4109;RPPR=665.309;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=305;SRP=665.309;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:87:70,8,7:70:2727:8,7:318,257:0,-6.33475,-228.067,-2.09875,-211.533,-224.2 0|0:133:88,0,42:88:3476:0,42:0,1641:-95.0309,-121.522,-407.572,0,-286.086,-273.443 0|0:102:88,1,6:88:3410:1,6:39,237:0,-24.6479,-304.537,-8.99782,-287.394,-287.434 0|0:72:59,5,7:59:2352:5,7:195,266:-1.95549,-10.5269,-202.75,0,-184.587,-191.701 dDocent_Contig_3380 108 . G A 4642.1 . AB=0.814433;ABP=169.609;AC=5;AF=0.625;AN=8;AO=187;CIGAR=1X;DP=223;DPB=223;DPRA=0;EPP=409.076;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5832;QR=1139;RO=35;RPL=0;RPP=409.076;RPPR=79.0118;RPR=187;RUN=1;SAF=0;SAP=409.076;SAR=187;SRF=0;SRP=79.0118;SRR=35;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:53:12,40:12:401:40:1259:-97.8607,0,-20.6692 0/1:86:16,70:16:511:70:2131:-166.151,0,-20.4093 0/1:55:7,48:7:227:48:1534:-121.781,0,-4.19234 1/1:29:0,29:0:0:29:908:-82.0089,-8.72987,0 dDocent_Contig_3381 38 . T G 248.187 . AB=0.1875;ABP=70.8688;AC=2;AF=0.25;AN=8;AO=17;CIGAR=1X3M;DP=125;DPB=125;DPRA=1.98148;EPP=39.9253;EPPR=228.843;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=592;QR=3509;RO=104;RPL=0;RPP=39.9253;RPPR=228.843;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=104;SRP=228.843;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:19:12,4,3:12:420:4,3:134,100:-7.24073,0,-32.9818,-2.75947,-26.0949,-36.0402 0|1:61:49,0,12:49:1645:0,12:0,420:-19.7714,-34.5219,-167.758,0,-133.584,-129.971 0|0:27:25,0,2:25:833:0,2:0,72:0,-7.52575,-74.919,-1.29109,-69.0421,-68.4401 0|0:18:18,0,0:18:611:0,0:0,0:0,-5.41854,-55.3109,-5.41854,-55.3109,-55.3109 dDocent_Contig_3382 133 . C T 2035.5 . AB=0.196507;ABP=552.639;AC=4;AF=0.5;AN=8;AO=135;CIGAR=1X2M1X;DP=687;DPB=687;DPRA=0;EPP=296.159;EPPR=1192.98;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4596;QR=18549;RO=548;RPL=0;RPP=296.159;RPPR=1192.98;RPR=135;RUN=1;SAF=0;SAP=296.159;SAR=135;SRF=0;SRP=1192.98;SRR=548;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:270:233,35:233:7923:35:1161:-23.9042,0,-632.282 0|1:160:137,22:137:4546:22:760:-20.6021,0,-361.221 0|1:135:92,43:92:3151:43:1474:-92.3158,0,-243.19 0|1:122:86,35:86:2929:35:1201:-71.7179,0,-227.184 dDocent_Contig_3383 121 . C T 4329.36 . AB=0.493113;ABP=3.15985;AC=4;AF=0.5;AN=8;AO=179;CIGAR=1X;DP=363;DPB=363;DPRA=0;EPP=391.704;EPPR=402.561;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6067;QR=5995;RO=184;RPL=0;RPP=391.704;RPPR=402.561;RPR=179;RUN=1;SAF=0;SAP=391.704;SAR=179;SRF=0;SRP=402.561;SRR=184;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:135:63,72:63:2047:72:2406:-176.16,0,-143.857 0/1:124:59,65:59:1974:65:2230:-163.645,0,-140.607 0/1:58:31,27:31:961:27:914:-65.1094,0,-69.3123 0/1:46:31,15:31:1013:15:517:-33.0105,0,-77.6207 dDocent_Contig_3384 13 . G A 126.385 . AB=0.130435;ABP=112.15;AC=3;AF=0.375;AN=8;AO=15;CIGAR=1X;DP=165;DPB=165;DPRA=0;EPP=35.5824;EPPR=328.731;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.8;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=594;QR=5967;RO=150;RPL=0;RPP=35.5824;RPPR=328.731;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=150;SRP=328.731;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:73:70,3:70:2792:3:119:0,-10.8802,-240.304 0/1:54:49,5:49:1944:5:199:-2.03274,0,-158.907 0/1:22:17,5:17:670:5:195:-11.3003,0,-54.0086 0/1:16:14,2:14:561:2:81:-2.86925,0,-46.0159 dDocent_Contig_3385 8 . A C 9301.35 . AB=0.41687;ABP=52.11;AC=4;AF=0.5;AN=8;AO=341;CIGAR=1X;DP=818;DPB=818;DPRA=0;EPP=743.482;EPPR=1036.63;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=13121;QR=18186;RO=476;RPL=0;RPP=743.482;RPPR=1036.63;RPR=341;RUN=1;SAF=341;SAP=743.482;SAR=0;SRF=476;SRP=1036.63;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:225:137,88:137:5230:88:3403:-238.668,0,-402.973 0/1:211:114,96:114:4359:96:3691:-268.694,0,-328.776 0/1:253:157,96:157:6014:96:3675:-254.705,0,-465.046 0/1:129:68,61:68:2583:61:2352:-173.058,0,-193.831 dDocent_Contig_3386 13 . C T 9154.34 . AB=0.183099;ABP=64.9431;AC=1;AF=0.125;AN=8;AO=13;CIGAR=1X1M1X;DP=320;DPB=320;DPRA=0.910256;EPP=31.2394;EPPR=76.8404;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=510;QR=1336;RO=34;RPL=0;RPP=31.2394;RPPR=76.8404;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:71:4,13,54:4:161:13,54:510,2155:-204.932,-164.197,-173.554,-28.6608,0,-25.6768 0|0:78:6,0,72:6:242:0,72:0,2861:-235.386,-237.192,-257.141,-1.32281,-21.6742,0 0|0:113:11,0,102:11:438:0,102:0,4078:-332.932,-336.243,-372.307,0,-36.4617,-5.75667 0|0:58:13,0,45:13:495:0,45:0,1812:-145.775,-149.689,-190.279,0,-40.9757,-27.4294 dDocent_Contig_3387 23 . G A 445.366 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=13;CIGAR=1X1M1X;DP=13;DPB=13;DPRA=0;EPP=31.2394;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=40.9231;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=508;QR=0;RO=0;RPL=0;RPP=31.2394;RPPR=0;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:6:0,6:0:0:6:227:-19.7084,-1.80618,0 1|1:3:0,3:0:0:3:121:-10.4945,-0.90309,0 1|1:4:0,4:0:0:4:160:-13.8554,-1.20412,0 .:.:.:.:.:.:.:. dDocent_Contig_3389 7 . C T 1803.41 . AB=0.409639;ABP=14.7833;AC=4;AF=0.5;AN=8;AO=68;CIGAR=2M1X6M;DP=166;DPB=166.556;DPRA=0;EPP=150.67;EPPR=198.443;GTI=0;LEN=1;MEANALT=2.25;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=2586;QR=3487;RO=90;RPL=0;RPP=150.67;RPPR=198.443;RPR=68;RUN=1;SAF=68;SAP=150.67;SAR=0;SRF=90;SRP=198.443;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:55:34,3,18:34:1320:3,18:117,694:-46.7513,-47.3705,-154.932,0,-98.8457,-103.043 0|1:32:23,1,7:23:891:1,7:39,263:-14.603,-18.3205,-91.2232,0,-69.9817,-71.0797 0|1:42:14,1,25:14:542:1,25:39,951:-73.7634,-74.7717,-118.997,0,-41.3057,-36.9859 0|1:37:19,0,18:19:734:0,18:0,678:-50.2134,-55.933,-116.223,0,-60.6714,-55.2528 dDocent_Contig_3390 48 . T C 96.2634 . AB=0.0526316;ABP=69.0688;AC=0;AF=0;AN=8;AO=6;CIGAR=3M1X2M1X;DP=141;DPB=141;DPRA=3.93939;EPP=16.0391;EPPR=265.758;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=211;QR=4761;RO=121;RPL=6;RPP=16.0391;RPPR=265.758;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=121;SRP=265.758;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:38:36,0,2,0:36:1421:0,2,0:0,77,0:0,-10.8371,-127.769,-4.13031,-121.447,-120.845,-10.8371,-127.769,-121.447,-127.769 0|0:54:44,4,2,4:44:1749:4,2,4:147,74,139:0,-1.22459,-144.055,-7.18878,-139.206,-150.617,-1.95502,-133.964,-139.925,-144.773 0|0:38:30,0,2,6:30:1191:0,2,6:0,60,239:-10.7229,-19.7538,-117.819,-14.982,-113.028,-112.426,0,-98.1376,-93.3473,-96.3314 0|0:11:11,0,0,0:11:400:0,0,0:0,0,0:0,-3.31133,-36.3344,-3.31133,-36.3344,-36.3344,-3.31133,-36.3344,-36.3344,-36.3344 dDocent_Contig_3392 8 . G C 15250.4 . AB=0.116883;ABP=101.178;AC=7;AF=0.875;AN=8;AO=14;CIGAR=2M1I1M1X3M2X;DP=547;DPB=603.667;DPRA=0.728477;EPP=33.4109;EPPR=118.098;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=541;QR=2035;RO=53;RPL=0;RPP=33.4109;RPPR=118.098;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:151:9,140,0:9:350:140,0:5365,0:-450.986,-13.3856,0,-453.696,-42.1442,-482.459 0|1:176:32,144,0:32:1227:144,0:5521,0:-443.896,0,-57.7417,-453.529,-101.09,-554.236 1|1:143:8,128,5:8:306:128,5:4924,196:-415.302,-13.401,0,-401.591,-22.3998,-425.197 1|1:77:4,64,9:4:152:64,9:2465,345:-217.054,-15.852,-9.05084,-189.944,0,-199.7 dDocent_Contig_3394 8 . C T 977.442 . AB=0.175824;ABP=86.0751;AC=1;AF=0.125;AN=8;AO=16;CIGAR=1X3M1X2M1X3M1X2M2X;DP=103;DPB=103;DPRA=0;EPP=37.7539;EPPR=98.5551;GTI=0;LEN=1;MEANALT=4.33333;MQM=60;MQMR=60;NS=4;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=619;QR=1709;RO=44;RPL=0;RPP=37.7539;RPPR=98.5551;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:45:17,9,3,16,0:17:667:9,3,16,0:346,123,614,0:-45.2687,-21.9824,-74.1304,-40.2312,-66.6856,-94.1866,0,-26.4544,-44.7017,-50.0395,-50.3862,-76.8396,-95.0896,-54.856,-105.243 0|0:28:8,3,13,1,1:8:314:3,13,1,1:120,518,32,37:-40.2542,-32.7756,-57.6971,0,-15.9428,-21.9183,-40.0878,-56.0248,-23.258,-65.6097,-39.6366,-55.574,-22.8058,-62.8847,-65.1592 0|0:12:9,0,3,0,0:9:343:0,3,0,0:0,121,0,0:-7.66763,-10.3769,-38.4923,0,-28.5128,-27.6097,-10.3769,-38.4923,-28.5128,-38.4923,-10.3769,-38.4923,-28.5128,-38.4923,-38.4923 0|1:18:10,4,1,1,2:10:385:4,1,1,2:153,41,31,82:-9.5434,0,-30.4054,-9.16589,-28.2236,-40.4773,-10.0757,-29.1268,-38.2944,-41.3787,-5.77685,-24.8373,-34.0066,-34.9088,-36.7905 dDocent_Contig_3395 1 . N G 13081.9 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=372;CIGAR=1X;DP=372;DPB=372;DPRA=0;EPP=810.798;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=59.8763;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=0.900538;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=14531;QR=0;RO=0;RPL=0;RPP=810.798;RPPR=0;RPR=372;RUN=1;SAF=372;SAP=810.798;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:87:0,87:0:0:87:3374:-303.56,-26.1896,0 1/1:112:0,112:0:0:112:4373:-393.307,-33.7154,0 1/1:103:0,103:0:0:103:4067:-366.044,-31.0061,0 1/1:70:0,70:0:0:70:2717:-244.68,-21.0721,0 dDocent_Contig_3396 98 . N C 2210.82 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=74;CIGAR=1X;DP=74;DPB=74;DPRA=0;EPP=163.699;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=2436;QR=0;RO=0;RPL=74;RPP=163.699;RPPR=0;RPR=0;RUN=1;SAF=74;SAP=163.699;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:18:0,18:0:0:18:537:-48.615,-5.41854,0 1/1:20:0,20:0:0:20:674:-60.9756,-6.0206,0 1/1:25:0,25:0:0:25:855:-77.2646,-7.52575,0 1/1:11:0,11:0:0:11:370:-33.6251,-3.31133,0 dDocent_Contig_3397 8 . C T 59.1356 . AB=0.107527;ABP=127.438;AC=1;AF=0.125;AN=8;AO=24;CIGAR=1X;DP=657;DPB=657;DPRA=0;EPP=55.1256;EPPR=1377.55;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=0.902054;PAO=0;PQA=0;PQR=0;PRO=0;QA=922;QR=24389;RO=633;RPL=0;RPP=55.1256;RPPR=1377.55;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=633;SRP=1377.55;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:225:218,7:218:8419:7:265:0,-43.5215,-733.25 0/0:198:195,3:195:7499:3:117:0,-48.6936,-663.832 0/0:141:137,4:137:5281:4:155:0,-28.1198,-460.955 0/1:93:83,10:83:3190:10:385:-7.01047,0,-259.256 dDocent_Contig_3398 27 . T C 396.459 . AB=0.243243;ABP=45.3834;AC=2;AF=0.25;AN=8;AO=18;CIGAR=1X;DP=131;DPB=131;DPRA=1.29825;EPP=42.0968;EPPR=248.387;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=704;QR=4542;RO=113;RPL=0;RPP=42.0968;RPPR=248.387;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=113;SRP=248.387;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:38:38,0:38:1521:0:0:0,-11.4391,-137.129 0/1:30:16,14:16:647:14:540:-39.9026,0,-49.5326 0/1:44:40,4:40:1606:4:164:-1.90458,0,-131.528 0/0:19:19,0:19:768:0:0:0,-5.71957,-69.4396 dDocent_Contig_3399 28 . G A 865.144 . AB=0.128107;ABP=631.288;AC=3;AF=0.375;AN=8;AO=69;CIGAR=1X2M;DP=631;DPB=631;DPRA=0;EPP=152.842;EPPR=1188.63;GTI=0;LEN=1;MEANALT=2.25;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.246377;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2782;QR=21105;RO=546;RPL=0;RPP=152.842;RPPR=1188.63;RPR=69;RUN=1;SAF=69;SAP=152.842;SAR=0;SRF=546;SRP=1188.63;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:222:195,1,26:195:7528:1,26:41,1040:-26.9806,-82.5215,-700.378,0,-615.01,-610.344 0|1:189:145,12,31:145:5623:12,31:475,1258:-60.1069,-64.7157,-523.024,0,-422.885,-452.597 0|1:112:101,0,10:101:3968:0,10:0,402:-3.01602,-33.42,-359.796,0,-326.667,-323.657 0|0:108:105,0,2:105:3986:0,2:0,82:0,-31.6081,-358.499,-24.6203,-351.73,-351.128 dDocent_Contig_3401 41 . T G 12089.6 . AB=0.383681;ABP=138.396;AC=3;AF=0.375;AN=8;AO=465;CIGAR=1X;DP=1403;DPB=1403;DPRA=0;EPP=1012.74;EPPR=2022.52;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.765591;PAIREDR=0.80597;PAO=0;PQA=0;PQR=0;PRO=0;QA=18166;QR=36721;RO=938;RPL=0;RPP=1012.74;RPPR=2039.85;RPR=465;RUN=1;SAF=465;SAP=1012.74;SAR=0;SRF=936;SRP=2022.52;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:435:285,150:285:11194:150:5888:-398.811,0,-875.847 0/1:364:156,208:156:6067:208:8120:-620.858,0,-436.272 0/1:353:269,84:269:10537:84:3323:-192.88,0,-841.462 0/0:251:228,23:228:8923:23:835:0,-0.115366,-727.202 dDocent_Contig_3402 120 . C T 81.4345 . AB=0.148148;ABP=61.0771;AC=2;AF=0.25;AN=8;AO=8;CIGAR=1X;DP=95;DPB=95;DPRA=1.31707;EPP=20.3821;EPPR=191.928;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=287;QR=3032;RO=87;RPL=0;RPP=20.3821;RPPR=191.928;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=191.928;SRR=87;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:27:27,0:27:961:0:0:0,-8.12781,-86.8069 0/1:26:21,5:21:702:5:179:-8.63361,0,-55.6605 0/1:28:25,3:25:884:3:108:-1.64633,0,-71.45 0/0:14:14,0:14:485:0:0:0,-4.21442,-43.9797 dDocent_Contig_3403 15 . C T 35.1074 . AB=0.113636;ABP=60.0608;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=147;DPB=147;DPRA=1.28155;EPP=13.8677;EPPR=311.359;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=191;QR=5699;RO=142;RPL=0;RPP=13.8677;RPPR=311.359;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=142;SRP=311.359;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:44:39,5:39:1560:5:191:-4.30649,0,-127.388 0/0:52:52,0:52:2108:0:0:0,-15.6536,-189.892 0/0:32:32,0:32:1272:0:0:0,-9.63296,-114.746 0/0:19:19,0:19:759:0:0:0,-5.71957,-68.6294 dDocent_Contig_3404 20 . C A 6581.94 . AB=0.42344;ABP=29.9423;AC=4;AF=0.5;AN=8;AO=224;CIGAR=1X3M1D1X10M;DP=529;DPB=515;DPRA=0;EPP=489.42;EPPR=500.277;GTI=0;LEN=1;MEANALT=4.25;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=8893;QR=8987;RO=229;RPL=0;RPP=489.42;RPPR=500.277;RPR=224;RUN=1;SAF=224;SAP=489.42;SAR=0;SRF=229;SRP=500.277;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:186:61,86,16,18:61:2386:86,16,18:3425,649,687:-263.673,0,-170.285,-228.511,-142.648,-419.863,-225.686,-139.824,-368.329,-416.434 0|1:209:95,91,5,15:95:3738:91,5,15:3601,197,573:-267.758,0,-280.098,-280.149,-291.284,-586.13,-249.347,-260.482,-540.625,-552.317 0|1:89:54,31,4,0:54:2125:31,4,0:1225,156,0:-84.5524,0,-165.47,-87.9852,-161.979,-261.579,-100.808,-174.802,-262.783,-275.606 0|1:45:19,16,9,0:19:738:16,9,0:642,326,0:-47.2003,0,-55.8352,-26.3281,-34.0549,-84.2485,-52.9199,-60.6517,-86.9578,-113.556 dDocent_Contig_3405 158 . C T 238.189 . AB=0.344828;ABP=9.07545;AC=2;AF=0.25;AN=8;AO=10;CIGAR=1X;DP=64;DPB=64;DPRA=0.828571;EPP=24.725;EPPR=120.27;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=372;QR=1933;RO=54;RPL=10;RPP=24.725;RPPR=120.27;RPR=0;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=120.27;SRR=54;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:23:23,0:23:841:0:0:0,-6.92369,-76.0019 0/1:18:9,9:9:310:9:333:-24.8994,0,-22.8068 0/1:11:10,1:10:376:1:39:-0.585235,0,-30.8798 0/0:12:12,0:12:406:0:0:0,-3.61236,-36.8555 dDocent_Contig_3406 10 . A G 169.491 . AB=0.28;ABP=13.5202;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=134;DPB=134;DPRA=0.688073;EPP=18.2106;EPPR=278.787;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=280;QR=5060;RO=127;RPL=0;RPP=18.2106;RPPR=278.787;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=127;SRP=278.787;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:29:29,0:29:1133:0:0:0,-8.72987,-102.249 0/0:46:46,0:46:1844:0:0:0,-13.8474,-166.164 0/0:34:34,0:34:1357:0:0:0,-10.235,-122.388 0/1:25:18,7:18:726:7:280:-18.046,0,-58.1395 dDocent_Contig_3407 87 . T C 5623.23 . AB=0.157025;ABP=373.901;AC=4;AF=0.5;AN=8;AO=57;CIGAR=1X3M1X;DP=363;DPB=363;DPRA=0;EPP=126.784;EPPR=107.241;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1870;QR=1593;RO=48;RPL=57;RPP=126.784;RPPR=107.241;RPR=0;RUN=1;SAF=57;SAP=126.784;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:133:25,68,6,32:25:830:68,6,32:2275,201,1119:-200.588,-23.8995,-70.5807,-191.835,-74.772,-257.181,-117.072,0,-167.946,-174.592 1|0:66:3,15,19,29:3:103:15,19,29:494,603,1022:-122.486,-83.46,-87.3085,-74.8601,-43.2997,-77.5042,-40.1643,-8.59511,0,-39.7998 1|0:99:20,20,21,37:20:660:20,21,37:660,695,1282:-101.034,-53.6948,-101.034,-50.8461,-50.8461,-97.8842,-2.84897,-2.84899,0,-45.0733 1|0:65:0,40,11,13:0:0:40,11,13:1342,371,427:-143.205,-34.5001,-22.4589,-113.135,-4.42592,-109.824,-108.704,0,-78.6348,-104.791 dDocent_Contig_3408 178 . T C 2599.65 . AB=0.445498;ABP=8.45442;AC=4;AF=0.5;AN=8;AO=94;CIGAR=1X;DP=211;DPB=211;DPRA=0;EPP=207.129;EPPR=257.073;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3636;QR=4451;RO=117;RPL=94;RPP=207.129;RPPR=257.073;RPR=0;RUN=1;SAF=0;SAP=207.129;SAR=94;SRF=0;SRP=257.073;SRR=117;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:46:20,26:20:710:26:1022:-78.4326,0,-50.3519 0/1:56:39,17:39:1495:17:652:-42.1498,0,-117.951 0/1:53:31,22:31:1191:22:876:-63.1993,0,-91.5218 0/1:56:27,29:27:1055:29:1086:-81.1732,0,-78.3904 dDocent_Contig_3409 98 . N G 66.5172 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=2X;DP=2;DPB=2.5;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=4.60517;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=70;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. 1|1:2:0,2:0:0:2:70:-6.6474,-0.60206,0 .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. dDocent_Contig_3410 31 . T C 1267.06 . AB=0.196429;ABP=271.963;AC=4;AF=0.5;AN=8;AO=66;CIGAR=1X3M1X;DP=336;DPB=336;DPRA=0;EPP=146.327;EPPR=587.136;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.681818;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2561;QR=10576;RO=269;RPL=0;RPP=146.327;RPPR=587.136;RPR=66;RUN=1;SAF=66;SAP=146.327;SAR=0;SRF=269;SRP=587.136;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:129:101,28:101:3955:28:1064:-57.2232,0,-317.155 0|1:75:60,15:60:2366:15:600:-31.7634,0,-190.537 0|1:72:53,18:53:2071:18:697:-41.3022,0,-164.845 0|1:60:55,5:55:2184:5:200:-0.318116,0,-178.69 dDocent_Contig_3411 8 . C T 46.0811 . AB=0.105263;ABP=131.584;AC=2;AF=0.25;AN=8;AO=13;CIGAR=1X;DP=226;DPB=226;DPRA=0.988304;EPP=31.2394;EPPR=465.534;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=0.981221;PAO=0;PQA=0;PQR=0;PRO=0;QA=502;QR=8216;RO=213;RPL=0;RPP=31.2394;RPPR=465.534;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=213;SRP=465.534;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:57:57,0:57:2196:0:0:0,-17.1587,-197.859 0/1:61:55,6:55:2127:6:229:-2.61291,0,-173.293 0/0:74:71,3:71:2736:3:117:0,-11.3658,-235.512 0/1:34:30,4:30:1157:4:156:-4.18227,0,-94.1947 dDocent_Contig_3412 1 . N G 75.0195 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=4.60517;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=79;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:79:-7.49763,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_3413 56 . G A 10135.9 . AB=0;ABP=0;AC=0;AF=0;AN=8;AO=6;CIGAR=2X;DP=339;DPB=339;DPRA=1.11111;EPP=16.0391;EPPR=26.1727;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=1.38778e-17;PAIRED=1;PAIREDR=0.708333;PAO=0;PQA=0;PQR=0;PRO=0;QA=243;QR=906;RO=24;RPL=6;RPP=16.0391;RPPR=55.1256;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=20;SRP=26.1727;SRR=4;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:117:4,0,113:4:158:0,113:0,4443:-385.227,-386.431,-399.433,-20.62,-34.0164,0 0|0:105:7,6,92:7:280:6,92:243,3592:-297.757,-279.826,-301.085,-4.63314,-7.65498,0 0|0:72:7,0,65:7:233:0,65:0,2544:-207.818,-209.926,-228.767,-0.387186,-19.567,0 0|0:45:6,0,39:6:235:0,39:0,1521:-123.581,-125.387,-144.712,0,-19.7156,-7.97544 dDocent_Contig_3414 16 . T C 1403.67 . AB=0.228571;ABP=182.188;AC=4;AF=0.5;AN=8;AO=64;CIGAR=1X;DP=280;DPB=280;DPRA=0;EPP=141.985;EPPR=472.048;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=0.916667;PAO=0;PQA=0;PQR=0;PRO=0;QA=2537;QR=8447;RO=216;RPL=0;RPP=141.985;RPPR=472.048;RPR=64;RUN=1;SAF=64;SAP=141.985;SAR=0;SRF=216;SRP=472.048;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:48:43,5:43:1668:5:190:-3.01274,0,-135.902 0/1:110:72,38:72:2857:38:1517:-103.658,0,-224.129 0/1:81:65,16:65:2522:16:631:-32.7369,0,-202.755 0/1:41:36,5:36:1400:5:199:-5.94633,0,-113.918 dDocent_Contig_3415 12 . C A 439.064 . AB=0.164557;ABP=157.432;AC=3;AF=0.375;AN=8;AO=32;CIGAR=1X;DP=232;DPB=232;DPRA=0;EPP=72.4974;EPPR=437.305;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1281;QR=8052;RO=200;RPL=0;RPP=72.4974;RPPR=437.305;RPR=32;RUN=1;SAF=32;SAP=72.4974;SAR=0;SRF=200;SRP=437.305;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:67:59,8:59:2368:8:325:-9.45062,0,-193.096 0/1:51:38,13:38:1522:13:514:-31.2526,0,-121.863 0/0:74:68,6:68:2748:6:237:0,-0.574205,-225.72 0/1:40:35,5:35:1414:5:205:-6.79381,0,-115.468 dDocent_Contig_3416 21 . T C 6328.58 . AB=0.114125;ABP=1385.57;AC=2;AF=0.25;AN=8;AO=122;CIGAR=1X4M;DP=1234;DPB=1234;DPRA=0;EPP=267.93;EPPR=1466.58;GTI=0;LEN=1;MEANALT=3.66667;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=0.989614;PAO=0;PQA=0;PQR=0;PRO=0;QA=4901;QR=26079;RO=674;RPL=0;RPP=267.93;RPPR=1466.58;RPR=122;RUN=1;SAF=122;SAP=267.93;SAR=0;SRF=674;SRP=1466.58;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:446:274,50,57,65:274:10591:50,57,65:1922,2302,2622:-133.649,-58.3769,-913.165,-26.3579,-738.444,-879.045,0,-712.086,-680.072,-850.279 0|0:308:165,49,40,53:165:6391:49,40,53:1880,1605,2118:-124.77,-20.1572,-530.404,-42.1999,-412.916,-555.162,0,-370.717,-392.764,-509.049 0|1:315:151,96,25,42:151:5879:96,25,42:3749,994,1683:-262.716,0,-454.254,-226.335,-401.316,-701.967,-169.518,-344.499,-570.839,-640.033 0|1:165:84,44,0,36:84:3218:44,0,36:1731,0,1456:-116.713,0,-250.823,-141.999,-264.069,-406.075,-21.9509,-144.019,-286.028,-275.191 dDocent_Contig_3418 17 . C A 3083.77 . AB=0.704225;ABP=28.7315;AC=6;AF=0.75;AN=8;AO=94;CIGAR=2X;DP=117;DPB=117;DPRA=0;EPP=207.129;EPPR=44.2683;GTI=0;LEN=1;MEANALT=2;MQM=59.8298;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.234043;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3685;QR=726;RO=19;RPL=0;RPP=207.129;RPPR=44.2683;RPR=94;RUN=1;SAF=94;SAP=207.129;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:44:10,33:10:368:33:1298:-103.75,0,-20.1178 1|1:30:0,29:0:0:29:1138:-102.355,-8.72987,0 0|1:27:9,17:9:358:17:659:-51.4029,0,-24.3479 1|1:16:0,15:0:0:15:590:-53.0627,-4.51545,0 dDocent_Contig_3419 77 . A T 252.255 . AB=0.261905;ABP=23.691;AC=1;AF=0.125;AN=8;AO=11;CIGAR=1X;DP=139;DPB=139;DPRA=1.29897;EPP=26.8965;EPPR=280.959;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.992188;PAO=0;PQA=0;PQR=0;PRO=0;QA=429;QR=4818;RO=128;RPL=11;RPP=26.8965;RPPR=280.959;RPR=0;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=128;SRP=280.959;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:50:50,0:50:1868:0:0:0,-15.0515,-168.366 0/1:42:31,11:31:1150:11:429:-26.3224,0,-91.1503 0/0:24:24,0:24:921:0:0:0,-7.22472,-83.2063 0/0:23:23,0:23:879:0:0:0,-6.92369,-79.4304 dDocent_Contig_3420 31 . A G 70.8214 . AB=0.181818;ABP=22.3561;AC=2;AF=0.25;AN=8;AO=4;CIGAR=1X;DP=77;DPB=77;DPRA=0.4;EPP=11.6962;EPPR=161.528;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=164;QR=2883;RO=73;RPL=0;RPP=11.6962;RPPR=161.528;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=73;SRP=161.528;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:33:33,0:33:1324:0:0:0,-9.93399,-119.418 0/0:22:22,0:22:879:0:0:0,-6.62266,-79.4215 0/1:11:8,3:8:323:3:123:-8.15346,0,-26.1276 0/1:11:10,1:10:357:1:41:-0.783237,0,-29.1418 dDocent_Contig_3421 7 . T C 5590.11 . AB=0.735632;ABP=86.924;AC=5;AF=0.625;AN=8;AO=177;CIGAR=1X;DP=223;DPB=223;DPRA=0;EPP=387.361;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6808;QR=1742;RO=46;RPL=0;RPP=387.361;RPPR=102.898;RPR=177;RUN=1;SAF=177;SAP=387.361;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:86:30,56:30:1137:56:2168:-169.453,0,-76.7364 0/1:64:14,50:14:527:50:1917:-153.51,0,-28.505 1/1:49:0,49:0:0:49:1870:-168.547,-14.7505,0 0/1:24:2,22:2:78:22:853:-69.8676,0,-0.178752 dDocent_Contig_3422 9 . T A 5664.54 . AB=0.622951;ABP=43.0579;AC=4;AF=0.5;AN=8;AO=190;CIGAR=1X2M1X;DP=305;DPB=305;DPRA=0;EPP=415.59;EPPR=252.73;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7359;QR=4414;RO=115;RPL=0;RPP=415.59;RPPR=252.73;RPR=190;RUN=1;SAF=190;SAP=415.59;SAR=0;SRF=115;SRP=252.73;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:113:35,78:35:1321:78:3041:-239.805,0,-85.1513 0|1:98:44,54:44:1702:54:2069:-156.933,0,-123.931 0|1:67:27,40:27:1040:40:1548:-119.412,0,-73.7356 0|1:27:9,18:9:351:18:701:-55.2933,0,-23.8234 dDocent_Contig_3423 21 . G A 30.7478 . AB=0.125;ABP=32.3252;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=86;DPB=86;DPRA=1.16129;EPP=9.52472;EPPR=183.243;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=119;QR=3268;RO=83;RPL=0;RPP=9.52472;RPPR=183.243;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=83;SRP=183.243;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:21,3:21:841:3:119:-3.87029,0,-68.7797 0/0:29:29,0:29:1151:0:0:0,-8.72987,-103.871 0/0:17:17,0:17:680:0:0:0,-5.11751,-61.5304 0/0:16:16,0:16:596:0:0:0,-4.81648,-53.9531 dDocent_Contig_3424 7 . T C 470.01 . AB=0.244444;ABP=54.064;AC=3;AF=0.375;AN=8;AO=22;CIGAR=1X;DP=94;DPB=94;DPRA=7.5;EPP=50.7827;EPPR=159.356;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.0138889;PAO=0;PQA=0;PQR=0;PRO=0;QA=851;QR=2748;RO=72;RPL=0;RPP=50.7827;RPPR=159.356;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=72;SRP=159.356;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:43:37,6:37:1409:6:231:-8.21362,0,-114.146 0/1:34:26,8:26:996:8:310:-18.0287,0,-79.7174 0/1:13:5,8:5:188:8:310:-24.3502,0,-13.3709 0/0:4:4,0:4:155:0:0:0,-1.20412,-14.3254 dDocent_Contig_3425 9 . T A 6352.19 . AB=0.397329;ABP=57.8554;AC=4;AF=0.5;AN=8;AO=238;CIGAR=1X;DP=599;DPB=599;DPRA=0;EPP=519.821;EPPR=763.026;GTI=0;LEN=1;MEANALT=1.75;MQM=58.7563;MQMR=59.9457;NS=4;NUMALT=1;ODDS=0;PAIRED=0.987395;PAIREDR=0.98;PAO=0;PQA=0;PQR=0;PRO=0;QA=9106;QR=13405;RO=350;RPL=0;RPP=519.821;RPPR=763.026;RPR=238;RUN=1;SAF=238;SAP=519.821;SAR=0;SRF=350;SRP=763.026;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:138:83,54:83:3137:54:2066:-144.087,0,-240.857 0/1:184:107,68:107:4149:68:2590:-180.195,0,-320.408 0/1:170:102,67:102:3892:67:2565:-178.307,0,-299.111 0/1:107:58,49:58:2227:49:1885:-137.62,0,-168.437 dDocent_Contig_3426 14 . T C 8171.9 . AB=0.66838;ABP=98.8063;AC=4;AF=0.5;AN=8;AO=260;CIGAR=1X;DP=389;DPB=389;DPRA=0;EPP=567.593;EPPR=283.13;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.984496;PAO=0;PQA=0;PQR=0;PRO=0;QA=10431;QR=4923;RO=129;RPL=0;RPP=567.593;RPPR=283.13;RPR=260;RUN=1;SAF=260;SAP=567.593;SAR=0;SRF=129;SRP=283.13;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:89:43,46:43:1641:46:1853:-140.181,0,-121.16 0/1:125:28,97:28:1080:97:3894:-312.808,0,-59.8726 0/1:102:47,55:47:1786:55:2205:-167.915,0,-130.275 0/1:73:11,62:11:416:62:2479:-201.276,0,-15.8144 dDocent_Contig_3427 26 . G T 218.347 . AB=0.238095;ABP=28.0339;AC=2;AF=0.25;AN=8;AO=10;CIGAR=1X;DP=67;DPB=67;DPRA=1.68;EPP=24.725;EPPR=126.784;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=399;QR=2293;RO=57;RPL=0;RPP=24.725;RPPR=126.784;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:9:9,0:9:360:0:0:0,-2.70927,-32.7629 0/1:21:14,7:14:554:7:276:-18.8853,0,-43.877 0/1:21:18,3:18:732:3:123:-5.14316,0,-59.8821 0/0:16:16,0:16:647:0:0:0,-4.81648,-58.5639 dDocent_Contig_3428 59 . C T 15917 . AB=0.50219;ABP=3.03883;AC=8;AF=1;AN=8;AO=344;CIGAR=1X1M;DP=685;DPB=685;DPRA=0;EPP=749.997;EPPR=157.185;GTI=0;LEN=1;MEANALT=2.75;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=5.55112e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=12524;QR=2720;RO=71;RPL=344;RPP=749.997;RPPR=157.185;RPR=0;RUN=1;SAF=344;SAP=749.997;SAR=0;SRF=71;SRP=157.185;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:243:38,106,98:38:1504:106,98:3995,3530:-480.101,-164.173,-256.049,-203.565,0,-297.845 1|1:145:3,34,107:3:107:34,107:1247,3982:-418.211,-317.198,-315.682,-93.1978,0,-69.7064 1|1:186:8,86,91:8:265:86,91:3199,3308:-508.165,-248.76,-244.291,-240.451,0,-234.476 1|1:111:22,41,48:22:844:41,48:1553,1704:-190.21,-69.5072,-126.436,-58.0484,0,-112.862 dDocent_Contig_3429 53 . G A 77.8672 . AB=0.076087;ABP=146.611;AC=2;AF=0.25;AN=8;AO=7;CIGAR=19M1D7M1X5M;DP=123;DPB=124.758;DPRA=0.989247;EPP=18.2106;EPPR=211.472;GTI=0;LEN=1;MEANALT=3.66667;MQM=60;MQMR=60;NS=4;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=268;QR=3705;RO=96;RPL=0;RPP=18.2106;RPPR=211.472;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=96;SRP=211.472;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:46:33,4,0,3,3:33:1267:4,0,3,3:153,0,111,118:-2.6314,0,-102.818,-12.5654,-104.022,-116.578,-3.48352,-94.9438,-107.499,-106.596,-2.84851,-94.314,-106.87,-97.7915,-105.967 0|1:26:21,0,3,2,0:21:796:0,3,2,0:0,113,79,0:-2.92749,-9.24912,-74.5044,0,-65.2448,-64.3417,-2.74088,-68.0022,-58.7424,-67.4001,-9.24912,-74.5044,-65.2448,-68.0022,-74.5044 0|0:31:29,0,0,0,2:29:1141:0,0,0,2:0,0,0,78:0,-8.72987,-102.593,-8.72987,-102.593,-102.593,-8.72987,-102.593,-102.593,-102.593,-1.92863,-96.1818,-96.1818,-96.1818,-95.5798 0|0:20:13,1,0,2,3:13:501:1,0,2,3:38,0,78,118:-5.80966,-6.6051,-47.4516,-9.72305,-47.7526,-50.8691,-3.30404,-41.3399,-44.4564,-43.8544,0,-38.0435,-41.1602,-34.747,-40.2571 dDocent_Contig_3430 1 . N G 113.747 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.29832;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:122:-11.3725,-0.90309,0 ./.:.:.:.:.:.:.:. dDocent_Contig_3432 48 . T C 54.3233 . AB=0.108108;ABP=101.724;AC=1;AF=0.125;AN=8;AO=14;CIGAR=1X;DP=273;DPB=273;DPRA=1.33333;EPP=33.4109;EPPR=565.422;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.942085;PAO=0;PQA=0;PQR=0;PRO=0;QA=558;QR=10297;RO=259;RPL=0;RPP=33.4109;RPPR=565.422;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=259;SRP=565.422;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:82:76,6:76:3035:6:242:0,-2.52714,-251.073 0/0:61:61,0:61:2414:0:0:0,-18.3628,-217.41 0/1:74:66,8:66:2638:8:316:-6.52922,0,-215.273 0/0:56:56,0:56:2210:0:0:0,-16.8577,-199.078 dDocent_Contig_3433 33 . G C 4054.4 . AB=0.106667;ABP=103.796;AC=5;AF=0.625;AN=8;AO=8;CIGAR=2M1X;DP=181;DPB=223.333;DPRA=0;EPP=20.3821;EPPR=102.898;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=321;QR=1788;RO=46;RPL=0;RPP=20.3821;RPPR=102.898;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:57:24,33,0:24:918:33,0:1296,0:-99.7606,0,-65.7673,-106.985,-75.7013,-182.3 1|1:45:0,41,4:0:0:41,4:1592,159:-144.284,-13.4876,-1.14539,-131.193,0,-129.989 0|1:30:10,16,4:10:391:16,4:638,162:-49.5264,0,-27.3199,-39.1771,-18.7741,-70.1163 0|1:49:12,37,0:12:479:37,0:1456,0:-116.55,0,-28.7122,-120.162,-39.8503,-159.615 dDocent_Contig_3434 12 . T C 4284.07 . AB=0.0801282;ABP=480.762;AC=4;AF=0.5;AN=8;AO=25;CIGAR=1X2M1X3M;DP=312;DPB=312;DPRA=0;EPP=57.2971;EPPR=298.331;GTI=0;LEN=1;MEANALT=2.75;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.977941;PAO=0;PQA=0;PQR=0;PRO=0;QA=971;QR=5275;RO=136;RPL=0;RPP=57.2971;RPPR=298.331;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=136;SRP=298.331;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:101:46,45,8:46:1765:45,8:1739,296:-128.985,0,-131.322,-118.622,-120.658,-261.072 0|1:90:44,40,5:44:1727:40,5:1567,193:-115.608,0,-129.996,-113.004,-126.188,-253.532 0|1:87:31,50,6:31:1190:50,6:1960,244:-151.831,0,-82.6011,-141.035,-77.5224,-236.898 0|1:34:15,13,6:15:593:13,6:505,238:-36.9732,0,-44.8868,-21.894,-29.2077,-68.8926 dDocent_Contig_3437 12 . T A 5110.92 . AB=0.620301;ABP=36.4477;AC=4;AF=0.5;AN=8;AO=165;CIGAR=1X;DP=266;DPB=266;DPRA=0;EPP=361.303;EPPR=222.329;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6614;QR=4068;RO=101;RPL=0;RPP=361.303;RPPR=222.329;RPR=165;RUN=1;SAF=165;SAP=361.303;SAR=0;SRF=101;SRP=222.329;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:87:30,57:30:1209:57:2303:-181.232,0,-82.8943 0/1:81:37,44:37:1489:44:1766:-134.77,0,-109.872 0/1:48:23,25:23:920:25:997:-75.5738,0,-68.655 0/1:50:11,39:11:450:39:1548:-124.506,0,-25.8043 dDocent_Contig_3438 87 . C T 6284.84 . AB=0.555785;ABP=16.093;AC=4;AF=0.5;AN=8;AO=269;CIGAR=1X;DP=484;DPB=484;DPRA=0;EPP=587.136;EPPR=469.877;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=8646;QR=7179;RO=215;RPL=269;RPP=587.136;RPPR=469.877;RPR=0;RUN=1;SAF=269;SAP=587.136;SAR=0;SRF=215;SRP=469.877;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:178:75,103:75:2507:103:3318:-245.269,0,-172.306 0/1:136:64,72:64:2124:72:2354:-171.179,0,-150.487 0/1:120:49,71:49:1662:71:2257:-167.258,0,-113.744 0/1:50:27,23:27:886:23:717:-49.7687,0,-64.9889 dDocent_Contig_3439 132 . A C 8340.27 . AB=0.582397;ABP=34.5007;AC=4;AF=0.5;AN=8;AO=311;CIGAR=1X;DP=534;DPB=534;DPRA=0;EPP=678.338;EPPR=485.077;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=11096;QR=7443;RO=222;RPL=0;RPP=678.338;RPPR=485.077;RPR=311;RUN=1;SAF=0;SAP=678.338;SAR=311;SRF=0;SRP=485.077;SRR=222;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:199:80,118:80:2655:118:4224:-320.638,0,-179.517 0/1:179:68,111:68:2273:111:3968:-303.407,0,-150.942 0/1:61:19,42:19:650:42:1487:-115.752,0,-40.454 0/1:95:55,40:55:1865:40:1417:-99.2195,0,-139.525 dDocent_Contig_3440 10 . C A 12989.6 . AB=0.0839161;ABP=433.083;AC=1;AF=0.125;AN=8;AO=24;CIGAR=2X;DP=428;DPB=428;DPRA=0.671362;EPP=55.1256;EPPR=65.983;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.965517;PAO=0;PQA=0;PQR=0;PRO=0;QA=953;QR=1177;RO=29;RPL=0;RPP=55.1256;RPPR=65.983;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:142:0,0,142:0:0:0,142:0,5651:-508.396,-508.396,-508.396,-42.7463,-42.7463,0 1|0:156:3,14,139:3:120:14,139:558,5602:-496.892,-451.845,-457.516,-36.0634,0,-4.10549 0|0:73:18,6,47:18:731:6,47:233,1881:-149.527,-135.805,-194.29,0,-41.1611,-46.1503 0|0:57:8,4,45:8:326:4,45:162,1821:-147.735,-136.785,-162.476,0,-13.539,-13.3499 dDocent_Contig_3441 10 . C A 426.718 . AB=0;ABP=0;AC=0;AF=0;AN=8;AO=3;CIGAR=2X;DP=139;DPB=139;DPRA=1.82143;EPP=9.52472;EPPR=250.558;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=121;QR=4546;RO=114;RPL=0;RPP=9.52472;RPPR=250.558;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=114;SRP=250.558;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:51:34,0,16:34:1366:0,16:0,650:-43.3726,-53.6076,-166.164,0,-112.552,-107.735 0|0:51:46,3,2:46:1837:3,2:121,81:0,-3.87433,-154.254,-7.16756,-148.478,-157.85 0|0:28:26,0,2:26:1035:0,2:0,81:0,-7.82678,-93.0368,-0.743106,-86.3571,-85.7551 0|0:9:8,0,1:8:308:0,1:0,41:-1.3853,-3.79354,-29.057,0,-25.6701,-25.3691 dDocent_Contig_3442 17 . C G 6104.11 . AB=0.608696;ABP=10.0912;AC=6;AF=0.75;AN=8;AO=177;CIGAR=1X;DP=204;DPB=204;DPRA=0;EPP=387.361;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.1111;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.777778;PAO=0;PQA=0;PQR=0;PRO=0;QA=7028;QR=1089;RO=27;RPL=0;RPP=387.361;RPPR=61.6401;RPR=177;RUN=1;SAF=177;SAP=387.361;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:66:0,66:0:0:66:2564:-230.887,-19.868,0 1/1:69:0,69:0:0:69:2765:-248.959,-20.7711,0 0/1:39:19,20:19:764:20:807:-61.2033,0,-57.2621 0/1:30:8,22:8:325:22:892:-71.5555,0,-20.5887 dDocent_Contig_3443 98 . N G 432.714 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=22;CIGAR=1X;DP=23;DPB=23;DPRA=0;EPP=50.7827;EPPR=0;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=466;QR=0;RO=0;RPL=22;RPP=50.7827;RPPR=0;RPR=0;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:8:0,7:0:0:7:163:-14.8092,-2.10721,0 1/1:6:0,6:0:0:6:145:-13.2886,-1.80618,0 1/1:5:0,5:0:0:5:85:-7.819,-1.50515,0 1/1:4:0,4:0:0:4:73:-6.75206,-1.20412,0 dDocent_Contig_3444 209 . N G 429.26 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=12;CIGAR=1X;DP=12;DPB=12;DPRA=0;EPP=3.0103;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=0.25;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=459;QR=0;RO=0;RPL=12;RPP=29.068;RPPR=0;RPR=0;RUN=1;SAF=6;SAP=3.0103;SAR=6;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1:0,1:0:0:1:40:-3.99568,-0.30103,0 1/1:3:0,3:0:0:3:118:-11.0022,-0.90309,0 1/1:8:0,8:0:0:8:301:-27.4473,-2.40824,0 ./.:.:.:.:.:.:.:. dDocent_Contig_3445 28 . A T 19225.9 . AB=0.499613;ABP=3.01198;AC=4;AF=0.5;AN=8;AO=645;CIGAR=1X1M1X;DP=1291;DPB=1291;DPRA=0;EPP=1403.61;EPPR=1329.78;GTI=0;LEN=1;MEANALT=2.75;MQM=59.986;MQMR=58.5712;NS=4;NUMALT=2;ODDS=0;PAIRED=0.99845;PAIREDR=0.996727;PAO=0;PQA=0;PQR=0;PRO=0;QA=25647;QR=24074;RO=611;RPL=0;RPP=1403.61;RPPR=1329.78;RPR=645;RUN=1;SAF=645;SAP=1403.61;SAR=0;SRF=611;SRP=1329.78;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:479:277,191,1:277:10894:191,1:7643,40:-546.212,0,-838.562,-626.303,-892.764,-1522.06 0|1:283:92,170,16:92:3636:170,16:6755,607:-528.386,0,-248.037,-506.331,-249.463,-800.712 0|1:272:126,144,0:126:4998:144,0:5708,0:-431.873,0,-345.999,-469.803,-389.347,-859.168 0|1:257:116,140,1:116:4546:140,1:5541,37:-421.108,0,-316.355,-453,-355.473,-811.184 dDocent_Contig_3447 28 . G A 107.791 . AB=0.148936;ABP=53.3238;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=143;DPB=143;DPRA=1.42373;EPP=20.3821;EPPR=296.159;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=326;QR=5340;RO=135;RPL=0;RPP=20.3821;RPPR=296.159;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=135;SRP=296.159;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:34:34,0:34:1342:0:0:0,-10.235,-121.047 0/0:37:36,1:36:1439:1:41:0,-7.04354,-125.667 0/1:47:40,7:40:1557:7:285:-11.876,0,-126.226 0/0:25:25,0:25:1002:0:0:0,-7.52575,-90.4781 dDocent_Contig_3448 47 . G T 156.587 . AB=0.132075;ABP=127.645;AC=1;AF=0.125;AN=8;AO=18;CIGAR=1X;DP=416;DPB=416;DPRA=1.27907;EPP=42.0968;EPPR=418.624;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=700;QR=15609;RO=398;RPL=0;RPP=42.0968;RPPR=418.624;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=398;SRP=867.256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:166:164,2:164:6456:2:81:0,-42.2852,-573.115 0/1:106:92,14:92:3590:14:537:-16.7556,0,-291.229 0/0:86:86,0:86:3369:0:0:0,-25.8886,-303.282 0/0:58:56,2:56:2194:2:82:0,-9.68006,-189.858 dDocent_Contig_3449 42 . T C 158.578 . AB=0.28;ABP=13.5202;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X2M1X;DP=82;DPB=82;DPRA=1.21622;EPP=20.3821;EPPR=163.699;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=308;QR=2682;RO=74;RPL=0;RPP=20.3821;RPPR=163.699;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=74;SRP=163.699;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:20:19,1:19:671:1:40:0,-2.02492,-56.7109 0|1:25:18,7:18:661:7:268:-16.9546,0,-52.2926 0|0:22:22,0:22:795:0:0:0,-6.62266,-71.8644 0|0:15:15,0:15:555:0:0:0,-4.51545,-50.2881 dDocent_Contig_3454 88 . A T 66.6256 . AB=0.235294;ABP=13.3567;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=69;DPB=69;DPRA=0.916667;EPP=13.8677;EPPR=141.985;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.5938;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.953125;PAO=0;PQA=0;PQR=0;PRO=0;QA=169;QR=2208;RO=64;RPL=5;RPP=13.8677;RPPR=141.985;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=64;SRP=141.985;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:13,4:13:451:4:136:-7.45831,0,-35.8041 0/0:21:21,0:21:726:0:0:0,-6.32163,-65.6327 0/0:15:15,0:15:513:0:0:0,-4.51545,-46.4957 0/0:16:15,1:15:518:1:33:0,-1.51734,-43.6492 dDocent_Contig_3455 37 . G A 6149.68 . AB=0.792308;ABP=99.4905;AC=6;AF=0.75;AN=8;AO=188;CIGAR=1X;DP=221;DPB=221;DPRA=0;EPP=411.247;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7538;QR=1332;RO=33;RPL=0;RPP=411.247;RPPR=74.6689;RPR=188;RUN=1;SAF=188;SAP=411.247;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:37:2,35:2:82:35:1423:-120.536,-3.35843,0 0/1:67:15,52:15:611:52:2088:-167.931,0,-35.1585 1/1:54:4,50:4:164:50:1977:-162.98,-1.10572,0 0/1:63:12,51:12:475:51:2050:-165.715,0,-24.134 dDocent_Contig_3456 127 . C T 1004.35 . AB=0.208955;ABP=200.193;AC=3;AF=0.375;AN=8;AO=66;CIGAR=2X3M1X2M1X;DP=391;DPB=391;DPRA=0;EPP=146.327;EPPR=704.396;GTI=0;LEN=1;MEANALT=1.5;MQM=59.8788;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.787879;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2416;QR=11566;RO=323;RPL=0;RPP=146.327;RPPR=704.396;RPR=66;RUN=1;SAF=0;SAP=146.327;SAR=66;SRF=0;SRP=704.396;SRR=323;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:108:93,13:93:3368:13:480:-11.246,0,-271.022 0|0:123:113,10:113:4041:10:377:0,-2.74301,-329.579 0|1:89:61,28:61:2187:28:1020:-65.313,0,-170.294 0|1:71:56,15:56:1970:15:539:-27.4676,0,-156.194 dDocent_Contig_3457 32 . T A 453.674 . AB=0.432432;ABP=4.47751;AC=2;AF=0.25;AN=8;AO=16;CIGAR=1X;DP=63;DPB=63;DPRA=1.42308;EPP=37.7539;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=644;QR=1892;RO=47;RPL=0;RPP=37.7539;RPPR=105.07;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:12,14:12:479:14:563:-43.1867,0,-35.6326 0/0:14:14,0:14:569:0:0:0,-4.21442,-51.5519 0/0:12:12,0:12:476:0:0:0,-3.61236,-43.1877 0/1:11:9,2:9:368:2:81:-4.3744,0,-30.174 dDocent_Contig_3458 30 . G T 7418.11 . AB=0.105263;ABP=285.873;AC=1;AF=0.125;AN=8;AO=22;CIGAR=1M1D1X2M1X;DP=315;DPB=272.167;DPRA=0.657233;EPP=50.7827;EPPR=128.956;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=847;QR=2200;RO=58;RPL=0;RPP=50.7827;RPPR=128.956;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:106:7,0,99:7:268:0,99:0,3784:-316.155,-318.262,-340.255,-7.42648,-29.802,0 0|0:109:35,4,70:35:1323:4,70:158,2726:-213.493,-211.027,-318.265,0,-95.4276,-87.359 0|0:74:16,14,44:16:609:14,44:535,1729:-137.404,-98.3331,-144.068,0,-6.06143,-36.7062 1|0:26:0,4,21:0:0:4,21:154,798:-78.3517,-65.7045,-64.5004,-12.8722,0,-6.5506 dDocent_Contig_3460 12 . C A 139.824 . AB=0.155172;ABP=62.913;AC=2;AF=0.25;AN=8;AO=10;CIGAR=1X;DP=93;DPB=93;DPRA=2.25;EPP=24.725;EPPR=183.243;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=405;QR=3360;RO=83;RPL=0;RPP=24.725;RPPR=183.243;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=83;SRP=183.243;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:12:12,0:12:471:0:0:0,-3.61236,-42.7375 0/1:24:18,6:18:736:6:243:-15.0235,0,-59.3376 0/0:23:22,1:22:895:1:40:0,-2.92801,-76.8599 0/1:34:31,3:31:1258:3:122:-1.13747,0,-103.25 dDocent_Contig_3461 1 . N G 167.06 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=10;CIGAR=1X;DP=10;DPB=10;DPRA=0;EPP=24.725;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=20.1;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=0.9;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=342;QR=0;RO=0;RPL=0;RPP=24.725;RPPR=0;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:4:0,4:0:0:4:142:-6.08541,-1.20412,0 1/1:3:0,3:0:0:3:98:-4.17917,-0.90309,0 1/1:3:0,3:0:0:3:102:-5.96249,-0.90309,0 dDocent_Contig_3462 47 . G A 314.283 . AB=0.241935;ABP=38.8746;AC=2;AF=0.25;AN=8;AO=15;CIGAR=1X;DP=141;DPB=141;DPRA=0.78481;EPP=35.5824;EPPR=276.616;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=573;QR=5034;RO=126;RPL=0;RPP=35.5824;RPPR=276.616;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=126;SRP=276.616;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:33:33,0:33:1306:0:0:0,-9.93399,-117.801 0/0:46:46,0:46:1855:0:0:0,-13.8474,-167.154 0/1:33:26,7:26:1038:7:277:-15.3648,0,-83.7769 0/1:29:21,8:21:835:8:296:-18.2573,0,-66.7354 dDocent_Contig_3464 75 . C T 1178.55 . AB=0.251064;ABP=129.501;AC=4;AF=0.5;AN=8;AO=59;CIGAR=1X;DP=235;DPB=235;DPRA=0;EPP=131.127;EPPR=385.189;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.982955;PAO=0;PQA=0;PQR=0;PRO=0;QA=2136;QR=6324;RO=176;RPL=59;RPP=131.127;RPPR=385.189;RPR=0;RUN=1;SAF=59;SAP=131.127;SAR=0;SRF=176;SRP=385.189;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:55:38,17:38:1345:17:600:-37.7693,0,-104.784 0/1:55:38,17:38:1370:17:620:-39.5777,0,-107.038 0/1:88:74,14:74:2671:14:516:-20.2912,0,-214.134 0/1:37:26,11:26:938:11:400:-25.2065,0,-73.5974 dDocent_Contig_3465 150 . T G 6310.44 . AB=0.708333;ABP=111.584;AC=4;AF=0.5;AN=8;AO=204;CIGAR=1X;DP=288;DPB=288;DPRA=0;EPP=445.991;EPPR=185.414;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=8022;QR=3285;RO=84;RPL=0;RPP=445.991;RPPR=185.414;RPR=204;RUN=1;SAF=0;SAP=445.991;SAR=204;SRF=0;SRP=185.414;SRR=84;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:118:37,81:37:1426:81:3208:-253.262,0,-93.0765 0/1:76:12,64:12:476:64:2523:-204.333,0,-20.3122 0/1:27:3,24:3:123:24:931:-75.9545,0,-3.33698 0/1:67:32,35:32:1260:35:1360:-102.483,0,-93.5049 dDocent_Contig_3467 12 . T C 79.794 . AB=0.125;ABP=71.4117;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1M1D1X1M1X;DP=253;DPB=251.6;DPRA=0.852792;EPP=18.2106;EPPR=537.193;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=284;QR=9542;RO=246;RPL=0;RPP=18.2106;RPPR=537.193;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=246;SRP=537.193;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:89:89,0:89:3473:0:0:0,-26.7917,-312.662 0|0:69:69,0:69:2670:0:0:0,-20.7711,-240.47 0|1:56:49,7:49:1892:7:284:-9.07631,0,-153.658 0|0:39:39,0:39:1507:0:0:0,-11.7402,-135.895 dDocent_Contig_3468 36 . T C 4813.19 . AB=0.0846154;ABP=392.673;AC=0;AF=0;AN=8;AO=22;CIGAR=1X2M1X2M1X3M1X1M1X2M1X3M1X1M1X2M1X2M2X;DP=260;DPB=260;DPRA=0;EPP=50.7827;EPPR=163.699;GTI=0;LEN=1;MEANALT=3.75;MQM=15.7273;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=840;QR=2843;RO=74;RPL=22;RPP=50.7827;RPPR=163.699;RPR=0;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=74;SRP=163.699;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:99:35,4,60:35:1337:4,60:153,2377:-185.333,-191.876,-300.355,0,-105.917,-91.8391 0|0:70:18,12,37:18:695:12,37:457,1444:-113.395,-105.229,-158.692,0,-43.6182,-46.0353 0|0:67:18,2,44:18:692:2,44:78,1737:-137.69,-140.843,-197.048,0,-54.707,-43.7187 0|0:24:3,4,16:3:119:4,16:152,617:-49.8903,-46.2903,-54.8838,0,-5.43927,-5.05027 dDocent_Contig_3469 40 . G C 3636.19 . AB=0.213508;ABP=330.24;AC=2;AF=0.25;AN=8;AO=98;CIGAR=1X2M1X;DP=459;DPB=459;DPRA=0;EPP=215.815;EPPR=519.821;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3903;QR=9405;RO=238;RPL=0;RPP=215.815;RPPR=519.821;RPR=98;RUN=1;SAF=98;SAP=215.815;SAR=0;SRF=238;SRP=519.821;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:207:115,51,41:115:4544:51,41:2035,1640:-132.971,0,-358.555,-32.4999,-238.817,-394.066 0|0:147:67,29,51:67:2653:29,51:1147,2027:-146.709,-72.4876,-282.103,0,-123.955,-202.994 0|0:53:25,7,21:25:989:7,21:282,845:-62.1109,-46.3935,-125.673,0,-58.14,-75.0629 0|1:52:31,11,10:31:1219:11,10:439,406:-26.8175,0,-96.9422,-2.6619,-66.7662,-99.9104 dDocent_Contig_3470 70 . G C 5513.62 . AB=0.702194;ABP=116.288;AC=4;AF=0.5;AN=8;AO=224;CIGAR=1X;DP=319;DPB=319;DPRA=0;EPP=489.42;EPPR=209.3;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7229;QR=3129;RO=95;RPL=224;RPP=489.42;RPPR=209.3;RPR=0;RUN=1;SAF=224;SAP=489.42;SAR=0;SRF=95;SRP=209.3;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:79:8,71:8:269:71:2307:-184.116,0,-0.756481 0/1:109:66,43:66:2214:43:1336:-87.7076,0,-166.718 0/1:70:12,58:12:370:58:1882:-148.583,0,-12.5271 0/1:61:9,52:9:276:52:1704:-135.281,0,-6.77598 dDocent_Contig_3471 97 . G T 44.8707 . AB=0.173913;ABP=24.253;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=53;DPB=53;DPRA=2.3;EPP=11.6962;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=132;QR=1585;RO=49;RPL=4;RPP=11.6962;RPPR=109.412;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:19,4:19:621:4:132:-5.28289,0,-49.277 0/0:7:7,0:7:221:0:0:0,-2.10721,-20.2003 0/0:12:12,0:12:380:0:0:0,-3.61236,-34.506 0/0:11:11,0:11:363:0:0:0,-3.31133,-32.9902 dDocent_Contig_3472 25 . G C 984.798 . AB=0.316667;ABP=38.0434;AC=3;AF=0.375;AN=8;AO=47;CIGAR=1X;DP=230;DPB=230;DPRA=0;EPP=105.07;EPPR=400.39;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1886;QR=7291;RO=183;RPL=0;RPP=105.07;RPPR=400.39;RPR=47;RUN=1;SAF=47;SAP=105.07;SAR=0;SRF=183;SRP=400.39;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:110:101,9:101:4022:9:362:0,-0.169318,-329.018 0/1:63:49,14:49:1959:14:569:-32.587,0,-157.541 0/1:35:17,18:17:672:18:714:-54.038,0,-50.2751 0/1:22:16,6:16:638:6:241:-15.4436,0,-51.1315 dDocent_Contig_3473 49 . G A 6790.78 . AB=0.8;ABP=81.1833;AC=6;AF=0.75;AN=8;AO=200;CIGAR=1X1M;DP=223;DPB=223;DPRA=0;EPP=437.305;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7901;QR=740;RO=19;RPL=200;RPP=437.305;RPPR=44.2683;RPR=0;RUN=1;SAF=200;SAP=437.305;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:84:0,0,84:0:0:0,84:0,3286:-295.814,-295.814,-295.814,-25.2865,-25.2865,0 0|1:46:5,0,41:5:199:0,41:0,1646:-134.523,-136.028,-152.413,0,-16.7832,-4.44097 0|1:54:14,0,39:14:541:0,39:0,1552:-123.556,-127.77,-172.196,0,-44.407,-32.6668 1|1:39:0,3,36:0:0:3,36:122,1417:-127.377,-117.313,-116.41,-10.8371,-0.367678,0 dDocent_Contig_3474 119 . T A 2130.56 . AB=0.494118;ABP=3.06139;AC=4;AF=0.5;AN=8;AO=84;CIGAR=1X;DP=170;DPB=170;DPRA=0;EPP=185.414;EPPR=183.243;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=58.747;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.951807;PAO=0;PQA=0;PQR=0;PRO=0;QA=2970;QR=2849;RO=83;RPL=0;RPP=185.414;RPPR=183.243;RPR=84;RUN=1;SAF=0;SAP=185.414;SAR=84;SRF=0;SRP=183.243;SRR=83;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:77:27,47:27:931:47:1675:-128.493,0,-61.5561 0/1:35:27,8:27:932:8:276:-14.6384,0,-73.6581 0/1:24:11,13:11:370:13:459:-34.4203,0,-26.3955 0/1:34:18,16:18:616:16:560:-40.4938,0,-42.6037 dDocent_Contig_3475 54 . T C 651.432 . AB=0.226562;ABP=86.137;AC=1;AF=0.125;AN=8;AO=38;CIGAR=1X;DP=458;DPB=458;DPRA=0.559454;EPP=85.5263;EPPR=910.686;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1523;QR=16754;RO=418;RPL=38;RPP=85.5263;RPPR=910.686;RPR=0;RUN=1;SAF=38;SAP=85.5263;SAR=0;SRF=418;SRP=910.686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:171:171,0:171:6847:0:0:0,-51.4761,-615.906 0/1:128:99,29:99:3987:29:1161:-66.2374,0,-320.273 0/0:97:92,4:92:3720:4:160:0,-14.499,-320.012 0/0:62:56,5:56:2200:5:202:0,-0.209427,-179.605 dDocent_Contig_3476 39 . T A 52.403 . AB=0.10084;ABP=167.695;AC=1;AF=0.125;AN=8;AO=19;CIGAR=1X2M1X;DP=396;DPB=396;DPRA=1.98246;EPP=44.2683;EPPR=799.941;GTI=0;LEN=1;MEANALT=2.66667;MQM=59.2632;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.210526;PAIREDR=0.844687;PAO=0;PQA=0;PQR=0;PRO=0;QA=736;QR=14187;RO=367;RPL=0;RPP=44.2683;RPPR=799.941;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=367;SRP=799.941;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:116:108,4:108:4248:4:157:0,-19.5887,-367.823 0|0:104:98,3:98:3700:3:120:0,-19.6173,-321.884 0|1:119:104,12:104:4027:12:459:-6.33721,0,-327.167 0|0:57:57,0:57:2212:0:0:0,-17.1587,-199.277 dDocent_Contig_3477 12 . T A 4064.59 . AB=0.715847;ABP=77.0658;AC=4;AF=0.5;AN=8;AO=131;CIGAR=1X;DP=183;DPB=183;DPRA=0;EPP=287.473;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=59.9771;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.862595;PAIREDR=0.961538;PAO=0;PQA=0;PQR=0;PRO=0;QA=5172;QR=2065;RO=52;RPL=0;RPP=287.473;RPPR=115.927;RPR=131;RUN=1;SAF=131;SAP=287.473;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:48:9,39:9:366:39:1559:-126.098,0,-18.8551 0/1:52:25,27:25:993:27:1057:-79.7623,0,-74.009 0/1:58:11,47:11:436:47:1871:-151.143,0,-22.1343 0/1:25:7,18:7:270:18:685:-54.4452,0,-17.1371 dDocent_Contig_3478 9 . A G 4615.49 . AB=0.471976;ABP=5.32269;AC=4;AF=0.5;AN=8;AO=160;CIGAR=2X3M1X2M1X;DP=339;DPB=339;DPRA=0;EPP=350.446;EPPR=304.845;GTI=0;LEN=1;MEANALT=3.75;MQM=59.725;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6196;QR=5453;RO=139;RPL=0;RPP=350.446;RPPR=304.845;RPR=160;RUN=1;SAF=160;SAP=350.446;SAR=0;SRF=139;SRP=304.845;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:103:30,56,3,9:30:1187:56,3,9:2161,121,362:-168.426,0,-80.8358,-167.482,-87.7187,-264.273,-147.621,-67.8584,-235.342,-242.607 0|1:84:39,40,5,0:39:1526:40,5,0:1559,199,0:-116.394,0,-113.421,-111.747,-109.075,-235.71,-128.134,-125.462,-237.215,-253.602 0|1:88:42,34,1,7:42:1646:34,1,7:1316,40,280:-94.869,0,-125.12,-104.217,-132.06,-239.273,-84.4467,-112.291,-216.51,-217.698 0|1:64:28,30,0,3:28:1094:30,0,3:1160,0,123:-86.8505,0,-80.9117,-95.2793,-89.9426,-185.218,-85.1249,-79.7884,-175.065,-174.161 dDocent_Contig_3479 78 . A C 36.2965 . AB=0.0116279;ABP=181.172;AC=0;AF=0;AN=8;AO=18;CIGAR=4M1X4M;DP=355;DPB=353.444;DPRA=0;EPP=42.0968;EPPR=695.71;GTI=0;LEN=1;MEANALT=2.75;MQM=41.4444;MQMR=60;NS=4;NUMALT=3;ODDS=1.38778e-17;PAIRED=1;PAIREDR=0.984326;PAO=0;PQA=0;PQR=0;PRO=0;QA=541;QR=10778;RO=319;RPL=18;RPP=42.0968;RPPR=695.71;RPR=0;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=319;SRP=695.71;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:154:143,0,0,10:143:4844:0,0,10:0,0,312:0,-43.0473,-435.843,-43.0473,-435.843,-435.843,-18.4571,-411.216,-411.216,-408.205 0|0:86:75,0,10,1:75:2544:0,10,1:0,337,35:-4.72646,-27.3037,-233.612,0,-206.302,-203.292,-24.5116,-230.82,-203.511,-230.519 0|0:56:50,0,1,5:50:1688:0,1,5:0,35,124:0,-15.0515,-151.948,-12.1838,-149.1,-148.799,-6.30384,-143.11,-140.262,-141.605 0|0:59:51,3,0,2:51:1702:3,0,2:105,0,70:0,-6.77616,-143.719,-15.3525,-144.622,-153.167,-9.75322,-139.039,-147.583,-146.981 dDocent_Contig_3480 11 . A T 157.745 . AB=0.125;ABP=130.041;AC=3;AF=0.375;AN=8;AO=14;CIGAR=6M1X;DP=132;DPB=131;DPRA=0;EPP=33.4109;EPPR=244.044;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=542;QR=4259;RO=111;RPL=0;RPP=33.4109;RPPR=244.044;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=111;SRP=244.044;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:51:42,5,4:42:1616:5,4:193,156:-3.2051,0,-131.167,-3.02538,-119.851,-134.497 0|1:33:24,2,7:24:917:2,7:78,267:-14.6679,-15.4789,-90.1165,0,-68.8194,-73.1246 0|1:20:18,0,2:18:686:0,2:0,78:-1.3827,-6.80124,-63.0676,0,-56.6551,-56.053 0|0:28:27,0,1:27:1040:0,1:0,41:0,-8.12781,-93.5,-4.33427,-90.115,-89.814 dDocent_Contig_3481 18 . C T 224.81 . AB=0.166667;ABP=78.288;AC=1;AF=0.125;AN=8;AO=19;CIGAR=1X2M1X;DP=313;DPB=313;DPRA=0.776596;EPP=44.2683;EPPR=639.252;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.9795;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.993174;PAO=0;PQA=0;PQR=0;PRO=0;QA=757;QR=11419;RO=293;RPL=0;RPP=44.2683;RPPR=639.252;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=293;SRP=639.252;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:82:78,4:78:3051:4:158:0,-10.0842,-260.103 0|0:94:93,0:93:3600:0:0:0,-27.9958,-323.744 0|1:78:65,13:65:2537:13:519:-23.5779,0,-205.013 0|0:59:57,2:57:2231:2:80:0,-10.169,-193.385 dDocent_Contig_3482 21 . A G 587.282 . AB=0.25974;ABP=41.6174;AC=3;AF=0.375;AN=8;AO=24;CIGAR=1X1M;DP=163;DPB=163;DPRA=0;EPP=55.1256;EPPR=289.645;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=965;QR=5211;RO=132;RPL=0;RPP=55.1256;RPPR=289.645;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=132;SRP=289.645;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:52:47,0,4:47:1874:0,4:0,156:0,-14.1484,-168.479,-1.3423,-155.658,-154.454 0|1:44:27,0,17:27:1056:0,17:0,688:-49.0031,-57.1309,-143.937,0,-87.2048,-82.0873 0|1:33:30,0,3:30:1186:0,3:0,121:-1.34621,-10.3771,-107.956,0,-97.9812,-97.0781 0|1:34:28,6,0:28:1095:6,0:241,0:-11.8317,0,-88.6019,-20.2605,-90.408,-110.269 dDocent_Contig_3483 23 . G T 2560.67 . AB=0.236559;ABP=283.317;AC=4;AF=0.5;AN=8;AO=110;CIGAR=1X;DP=465;DPB=465;DPRA=0;EPP=241.872;EPPR=773.883;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.997183;PAO=0;PQA=0;PQR=0;PRO=0;QA=4434;QR=14210;RO=355;RPL=0;RPP=241.872;RPPR=773.883;RPR=110;RUN=1;SAF=110;SAP=241.872;SAR=0;SRF=355;SRP=773.883;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:198:168,30:168:6703:30:1220:-50.4653,0,-543.372 0/1:121:66,55:66:2640:55:2202:-161.926,0,-201.293 0/1:72:66,6:66:2655:6:243:-0.573437,0,-217.396 0/1:74:55,19:55:2212:19:769:-47.2512,0,-176.972 dDocent_Contig_3484 98 . N G 42.7804 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=4.60517;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=45;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:45:-4.27369,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_3485 77 . T G 8399.82 . AB=0.788462;ABP=40.5935;AC=7;AF=0.875;AN=8;AO=312;CIGAR=1X;DP=341;DPB=341;DPRA=0;EPP=680.51;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=10101;QR=944;RO=28;RPL=312;RPP=680.51;RPPR=63.8115;RPR=0;RUN=1;SAF=312;SAP=680.51;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:110:4,106:4:137:106:3451:-298.148,-20.4452,0 1/1:139:10,128:10:346:128:4181:-345.023,-10.4171,0 0/1:52:11,41:11:359:41:1315:-102.983,0,-16.9726 1/1:40:3,37:3:102:37:1154:-94.6245,-2.5244,0 dDocent_Contig_3486 34 . G A 8038.25 . AB=0.55123;ABP=14.1346;AC=4;AF=0.5;AN=8;AO=269;CIGAR=1X;DP=488;DPB=488;DPRA=0;EPP=587.136;EPPR=478.563;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.945205;PAO=0;PQA=0;PQR=0;PRO=0;QA=10613;QR=8712;RO=219;RPL=0;RPP=587.136;RPPR=478.563;RPR=269;RUN=1;SAF=269;SAP=587.136;SAR=0;SRF=219;SRP=478.563;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:138:65,73:65:2587:73:2879:-217.679,0,-191.418 0/1:176:68,108:68:2697:108:4285:-332.644,0,-189.865 0/1:126:63,63:63:2508:63:2455:-183.181,0,-187.933 0/1:48:23,25:23:920:25:994:-75.3112,0,-68.6566 dDocent_Contig_3487 7 . C T 718.593 . AB=0.307692;ABP=48.9453;AC=2;AF=0.25;AN=8;AO=47;CIGAR=2X;DP=222;DPB=222;DPRA=3.0303;EPP=105.07;EPPR=376.504;GTI=0;LEN=1;MEANALT=1.33333;MQM=30;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1813;QR=6603;RO=172;RPL=0;RPP=105.07;RPPR=376.504;RPR=47;RUN=1;SAF=47;SAP=105.07;SAR=0;SRF=172;SRP=376.504;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:83:51,32,0:51:1968:32,0:1232,0:-60.0095,0,-152.375,-75.362,-162.008,-237.041 0|1:60:48,12,0:48:1828:12,0:465,0:-14.0437,0,-146.709,-28.4931,-150.321,-178.503 0|0:57:51,3,3:51:1959:3,3:116,113:0,-8.34665,-168.267,-6.05206,-159.911,-166.05 0|0:22:22,0,0:22:848:0,0:0,0:0,-6.62266,-76.6427,-6.62266,-76.6427,-76.6427 dDocent_Contig_3488 12 . C G 2456.32 . AB=0.618321;ABP=18.94;AC=4;AF=0.5;AN=8;AO=81;CIGAR=1X;DP=131;DPB=131;DPRA=0;EPP=178.9;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3209;QR=2012;RO=50;RPL=0;RPP=178.9;RPPR=111.584;RPR=81;RUN=1;SAF=81;SAP=178.9;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:47:23,24:23:914:24:958:-72.3715,0,-68.4125 0/1:19:6,13:6:245:13:508:-40.3387,0,-16.7099 0/1:41:14,27:14:569:27:1059:-83.2465,0,-39.21 0/1:24:7,17:7:284:17:684:-54.665,0,-18.7091 dDocent_Contig_3489 34 . A C 1188.26 . AB=0.546667;ABP=4.429;AC=4;AF=0.5;AN=8;AO=41;CIGAR=1X;DP=75;DPB=75;DPRA=0;EPP=92.0407;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1611;QR=1359;RO=34;RPL=0;RPP=92.0407;RPPR=76.8404;RPR=41;RUN=1;SAF=41;SAP=92.0407;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:6,20:6:239:20:803:-64.7571,0,-14.0571 0/1:15:5,10:5:192:10:380:-30.0284,0,-13.1318 0/1:23:15,8:15:607:8:306:-20.9695,0,-48.0446 0/1:11:8,3:8:321:3:122:-8.06116,0,-25.9468 dDocent_Contig_3490 134 . C A 101.723 . AB=0.108597;ABP=297.083;AC=2;AF=0.25;AN=8;AO=26;CIGAR=1X;DP=438;DPB=438;DPRA=1.51477;EPP=59.4686;EPPR=897.657;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=939;QR=13795;RO=412;RPL=0;RPP=59.4686;RPPR=897.657;RPR=26;RUN=1;SAF=0;SAP=59.4686;SAR=26;SRF=0;SRP=897.657;SRR=412;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:144:129,15:129:4330:15:544:-5.94911,0,-346.552 0/0:138:136,2:136:4594:2:70:0,-34.8948,-407.007 0/0:79:79,0:79:2669:0:0:0,-23.7814,-240.465 0/1:77:68,9:68:2202:9:325:-6.41702,0,-175.262 dDocent_Contig_3491 170 . C A 2665.09 . AB=0.497297;ABP=3.02204;AC=4;AF=0.5;AN=8;AO=92;CIGAR=1X;DP=185;DPB=185;DPRA=0;EPP=202.786;EPPR=204.957;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3622;QR=3631;RO=93;RPL=92;RPP=202.786;RPPR=204.957;RPR=0;RUN=1;SAF=0;SAP=202.786;SAR=92;SRF=0;SRP=204.957;SRR=93;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:5,22:5:197:22:842:-67.9566,0,-9.9754 0/1:80:49,31:49:1918:31:1237:-87.5176,0,-148.744 0/1:38:24,14:24:916:14:551:-38.4908,0,-71.3014 0/1:40:15,25:15:600:25:992:-77.5341,0,-42.2958 dDocent_Contig_3492 30 . A G 4410.19 . AB=0.652778;ABP=46.8017;AC=3;AF=0.375;AN=8;AO=141;CIGAR=1X;DP=223;DPB=223;DPRA=10.2857;EPP=309.188;EPPR=181.071;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5656;QR=3261;RO=82;RPL=0;RPP=309.188;RPPR=181.071;RPR=141;RUN=1;SAF=141;SAP=309.188;SAR=0;SRF=82;SRP=181.071;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:91:45,46:45:1772:46:1845:-138.862,0,-132.304 0/1:95:13,82:13:526:82:3295:-267.993,0,-19.0891 0/0:7:7,0:7:276:0:0:0,-2.10721,-25.2073 0/1:30:17,13:17:687:13:516:-37.7552,0,-53.1277 dDocent_Contig_3493 8 . C A 134.099 . AB=0.144928;ABP=78.5712;AC=1;AF=0.125;AN=8;AO=10;CIGAR=1X;DP=212;DPB=212;DPRA=1.44755;EPP=24.725;EPPR=441.648;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=388;QR=7796;RO=202;RPL=0;RPP=24.725;RPPR=441.648;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=202;SRP=441.648;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:87:87,0:87:3345:0:0:0,-26.1896,-301.186 0/1:69:59,10:59:2285:10:388:-14.5068,0,-185.092 0/0:43:43,0:43:1671:0:0:0,-12.9443,-150.649 0/0:13:13,0:13:495:0:0:0,-3.91339,-44.8956 dDocent_Contig_3494 39 . G A 345.131 . AB=0.25;ABP=35.5824;AC=3;AF=0.375;AN=8;AO=15;CIGAR=1X;DP=80;DPB=80;DPRA=1;EPP=35.5824;EPPR=144.156;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.969231;PAO=0;PQA=0;PQR=0;PRO=0;QA=601;QR=2569;RO=65;RPL=0;RPP=35.5824;RPPR=144.156;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=65;SRP=144.156;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:13,7:13:522:7:280:-19.5512,0,-41.3066 0/1:12:11,1:11:429:1:41:-0.482207,0,-35.3448 0/1:28:21,7:21:808:7:280:-17.1427,0,-64.5978 0/0:20:20,0:20:810:0:0:0,-6.0206,-73.2156 dDocent_Contig_3495 26 . T A 3682.26 . AB=0.336562;ABP=98.8337;AC=4;AF=0.5;AN=8;AO=139;CIGAR=1X;DP=413;DPB=413;DPRA=0;EPP=304.845;EPPR=597.994;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.989051;PAO=0;PQA=0;PQR=0;PRO=0;QA=5517;QR=10898;RO=274;RPL=0;RPP=304.845;RPPR=597.994;RPR=139;RUN=1;SAF=139;SAP=304.845;SAR=0;SRF=274;SRP=597.994;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:147:110,37:110:4405:37:1462:-87.5667,0,-352.133 0/1:79:30,49:30:1186:49:1967:-153.444,0,-83.2402 0/1:122:83,39:83:3282:39:1524:-100.672,0,-258.727 0/1:65:51,14:51:2025:14:564:-31.5331,0,-162.87 dDocent_Contig_3496 62 . G T 130.406 . AB=0.333333;ABP=6.62942;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=65;DPB=65;DPRA=0.9;EPP=13.8677;EPPR=133.299;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=203;QR=2324;RO=60;RPL=5;RPP=13.8677;RPPR=133.299;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:33:33,0:33:1266:0:0:0,-9.93399,-114.219 0/1:15:10,5:10:388:5:203:-14.1374,0,-30.7609 0/0:5:5,0:5:199:0:0:0,-1.50515,-18.2881 0/0:12:12,0:12:471:0:0:0,-3.61236,-42.7409 dDocent_Contig_3497 13 . A G 905.972 . AB=0.0384615;ABP=243.543;AC=0;AF=0;AN=8;AO=5;CIGAR=2M1D3M1X14M;DP=240;DPB=232.857;DPRA=0;EPP=3.44459;EPPR=142.112;GTI=0;LEN=1;MEANALT=16.5;MQM=26.6;MQMR=59.6029;NS=4;NUMALT=9;ODDS=0;PAIRED=0;PAIREDR=0.955882;PAO=0;PQA=0;PQR=0;PRO=0;QA=133;QR=2613;RO=68;RPL=0;RPP=13.8677;RPPR=150.67;RPR=5;RUN=1;SAF=2;SAP=3.44459;SAR=3;SRF=67;SRP=142.112;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:77:21,4,1,4,7,2,0,8,2,0:21:823:4,1,4,7,2,0,8,2,0:96,25,77,224,74,0,270,60,0:-13.9451,-13.9122,-80.4309,-18.5884,-79.9573,-86.009,-15.3961,-76.7658,-81.4403,-81.9139,-4.10204,-65.4771,-70.1518,-66.9603,-69.7223,-14.7468,-76.1173,-80.7923,-77.6004,-66.3116,-81.8681,-20.2667,-81.635,-86.31,-83.118,-71.8296,-82.4701,-87.9879,0,-61.3772,-66.052,-62.8605,-51.571,-62.2118,-67.7298,-65.3216,-16.0091,-77.379,-82.0538,-78.862,-67.5734,-78.2139,-83.7317,-63.4736,-83.1296,-20.2667,-81.635,-86.31,-83.118,-71.8296,-82.4701,-87.9879,-67.7298,-83.7317,-87.9879 0|0:77:30,4,0,0,0,0,9,20,5,0:30:1150:4,0,0,0,0,9,20,5,0:112,0,0,0,0,267,706,135,0:-44.3073,-45.5483,-138.628,-53.3382,-139.832,-147.621,-53.3382,-139.832,-147.621,-147.621,-53.3382,-139.832,-147.621,-147.621,-147.621,-53.3382,-139.832,-147.621,-147.621,-147.621,-147.621,-32.145,-118.645,-126.433,-126.433,-126.433,-126.433,-123.724,0,-86.524,-94.3119,-94.3119,-94.3119,-94.3119,-73.1256,-88.2913,-44.0511,-130.545,-138.334,-138.334,-138.334,-138.334,-117.148,-85.0271,-136.829,-53.3382,-139.832,-147.621,-147.621,-147.621,-147.621,-126.433,-94.3119,-138.334,-147.621 0|0:53:11,0,4,2,2,3,5,13,0,4:11:425:0,4,2,2,3,5,13,0,4:0,108,60,32,108,156,409,0,140:-26.5921,-29.9034,-64.8337,-22.472,-57.4038,-56.1996,-25.6466,-60.578,-53.1483,-59.9759,-28.1638,-63.0937,-55.6644,-58.8382,-62.4916,-21.7816,-56.7146,-49.2847,-52.4588,-54.9748,-55.8115,-17.5371,-52.4715,-45.0418,-48.2157,-50.732,-44.3519,-50.9663,0,-34.9417,-27.5132,-30.6862,-33.2038,-26.8216,-22.5787,-31.0283,-29.9034,-64.8337,-57.4038,-60.578,-63.0937,-56.7146,-52.4715,-34.9417,-64.8337,-19.0818,-54.0158,-46.586,-49.76,-52.2762,-45.8963,-41.653,-24.1225,-54.0158,-52.8117 0|0:33:6,0,0,3,0,1,2,5,7,0:6:215:0,0,3,0,1,2,5,7,0:0,0,90,0,37,66,162,155,0:-10.7422,-12.5484,-30.0961,-12.5484,-30.0961,-30.0961,-6.16242,-23.7122,-23.7122,-22.8091,-12.5484,-30.0961,-30.0961,-23.7122,-30.0961,-9.78724,-27.3361,-27.3361,-20.952,-27.3361,-27.0351,-7.44963,-24.9994,-24.9994,-18.6152,-24.9994,-22.2391,-24.3973,0,-17.5535,-17.5535,-11.1689,-17.5535,-14.7928,-12.4558,-16.0483,-2.60262,-20.1497,-20.1497,-13.769,-20.1497,-17.39,-15.0541,-7.61045,-18.0424,-12.5484,-30.0961,-30.0961,-23.7122,-30.0961,-27.3361,-24.9994,-17.5535,-20.1497,-30.0961 dDocent_Contig_3498 209 . N G 71.2194 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=40;MQMR=0;NS=1;NUMALT=1;ODDS=4.60517;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:82:-7.11762,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_3499 26 . A G 2836.9 . AB=0.261161;ABP=224.985;AC=4;AF=0.5;AN=8;AO=117;CIGAR=1X;DP=448;DPB=448;DPRA=0;EPP=257.073;EPPR=721.768;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.864;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.984894;PAO=0;PQA=0;PQR=0;PRO=0;QA=4679;QR=13204;RO=331;RPL=0;RPP=257.073;RPPR=721.768;RPR=117;RUN=1;SAF=117;SAP=257.073;SAR=0;SRF=331;SRP=721.768;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:164:101,63:101:3997:63:2520:-177.56,0,-310.266 0/1:107:91,16:91:3654:16:650:-26.6231,0,-296.613 0/1:115:82,33:82:3285:33:1305:-83.0935,0,-261.09 0/1:62:57,5:57:2268:5:204:-0.0801727,0,-185.626 dDocent_Contig_3500 107 . N G 92.4631 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=2X1I2M;DP=3;DPB=3.75;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=40;MQMR=0;NS=1;NUMALT=1;ODDS=5.29832;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=102;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. 1|1:3:0,3:0:0:3:102:-9.24414,-0.90309,0 dDocent_Contig_3501 8 . T A 7538.41 . AB=0.650485;ABP=84.0505;AC=4;AF=0.5;AN=8;AO=268;CIGAR=1X;DP=412;DPB=412;DPRA=0;EPP=584.965;EPPR=315.702;GTI=0;LEN=1;MEANALT=1;MQM=54.2164;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.80597;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=10232;QR=5498;RO=144;RPL=0;RPP=584.965;RPPR=315.702;RPR=268;RUN=1;SAF=268;SAP=584.965;SAR=0;SRF=144;SRP=315.702;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:178:81,97:81:3078:97:3655:-264.63,0,-223.599 0/1:135:33,102:33:1257:102:3929:-295.362,0,-72.7808 0/1:62:18,44:18:698:44:1686:-124.374,0,-44.4905 0/1:37:12,25:12:465:25:962:-74.4644,0,-31.0639 dDocent_Contig_3503 72 . A G 129.548 . AB=0.134615;ABP=123.611;AC=2;AF=0.25;AN=8;AO=14;CIGAR=1X;DP=164;DPB=164;DPRA=1.73333;EPP=33.4109;EPPR=328.731;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=498;QR=5703;RO=150;RPL=14;RPP=33.4109;RPPR=328.731;RPR=0;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=150;SRP=328.731;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:44:40,4:40:1490:4:145:-0.159484,0,-121.109 0/1:60:50,10:50:1923:10:353:-14.0455,0,-155.245 0/0:44:44,0:44:1694:0:0:0,-13.2453,-152.694 0/0:16:16,0:16:596:0:0:0,-4.81648,-53.969 dDocent_Contig_3504 1 . N G 297.691 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=8;CIGAR=1X;DP=8;DPB=8;DPRA=0;EPP=20.3821;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=313;QR=0;RO=0;RPL=0;RPP=20.3821;RPPR=0;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:5:0,5:0:0:5:198:-18.197,-1.50515,0 ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:80:-7.59179,-0.60206,0 1/1:1:0,1:0:0:1:35:-3.49863,-0.30103,0 dDocent_Contig_3505 65 . C A 88.7832 . AB=0.118421;ABP=99.1265;AC=1;AF=0.125;AN=8;AO=16;CIGAR=1X;DP=232;DPB=232;DPRA=3.53333;EPP=37.7539;EPPR=472.048;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=55.5139;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.912037;PAO=0;PQA=0;PQR=0;PRO=0;QA=603;QR=8402;RO=216;RPL=16;RPP=37.7539;RPPR=472.048;RPR=0;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=216;SRP=472.048;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:96:90,6:90:3527:6:204:0,-10.2169,-289.252 0/1:76:67,9:67:2609:9:361:-9.97523,0,-199.461 0/0:40:39,1:39:1481:1:38:0,-8.24393,-104.947 0/0:20:20,0:20:785:0:0:0,-6.0206,-70.9681 dDocent_Contig_3506 55 . T A 140.97 . AB=0.110092;ABP=146.945;AC=1;AF=0.125;AN=8;AO=12;CIGAR=1X1M1X;DP=153;DPB=153;DPRA=2.47727;EPP=29.068;EPPR=280.959;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=445;QR=5024;RO=128;RPL=12;RPP=29.068;RPPR=280.959;RPR=0;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=128;SRP=280.959;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:63:54,7,2:54:2141:7,2:255,79:-4.54914,0,-174.118,-14.297,-169.724,-189.947 0|0:27:25,0,2:25:975:0,2:0,67:0,-7.52575,-87.7104,-1.76476,-82.2884,-81.6864 0|0:46:33,5,8:33:1275:5,8:190,268:-11.7415,-6.0759,-109.309,0,-89.1214,-102.295 0|0:17:16,0,1:16:633:0,1:0,35:0,-4.81648,-56.9492,-1.61888,-54.1042,-53.8031 dDocent_Contig_3507 26 . T C 34742 . AB=0.334901;ABP=909.32;AC=4;AF=0.5;AN=8;AO=1282;CIGAR=1X;DP=3828;DPB=3828;DPRA=0;EPP=2786.84;EPPR=5490.32;GTI=0;LEN=1;MEANALT=1.75;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=2.22045e-16;PAIRED=0.969579;PAIREDR=0.992877;PAO=0;PQA=0;PQR=0;PRO=0;QA=51455;QR=101545;RO=2527;RPL=0;RPP=2786.84;RPPR=5490.32;RPR=1282;RUN=1;SAF=1282;SAP=2786.84;SAR=0;SRF=2527;SRP=5490.32;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:1015:682,325:682:27451:325:13096:-874.095,0,-2164.53 0/1:1148:724,416:724:29172:416:16744:-1161.96,0,-2279.12 0/1:1072:681,388:681:27326:388:15500:-1071.53,0,-2134.56 0/1:593:440,153:440:17596:153:6115:-371.6,0,-1403.66 dDocent_Contig_3509 25 . A T 1036.66 . AB=0.307692;ABP=44.7694;AC=2;AF=0.25;AN=8;AO=40;CIGAR=1X;DP=240;DPB=240;DPRA=1.18182;EPP=89.8692;EPPR=437.305;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1592;QR=7953;RO=200;RPL=0;RPP=89.8692;RPPR=437.305;RPR=40;RUN=1;SAF=40;SAP=89.8692;SAR=0;SRF=200;SRP=437.305;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:82:82,0:82:3271:0:0:0,-24.6845,-294.445 0/1:92:55,37:55:2181:37:1469:-104.758,0,-168.768 0/1:38:35,3:35:1383:3:123:-0.0256485,0,-113.288 0/0:28:28,0:28:1118:0:0:0,-8.42884,-100.903 dDocent_Contig_3510 15 . T G 936.207 . AB=0.618182;ABP=23.0273;AC=4;AF=0.5;AN=8;AO=102;CIGAR=1X;DP=165;DPB=165;DPRA=0;EPP=224.5;EPPR=139.813;GTI=0;LEN=1;MEANALT=1;MQM=16.1765;MQMR=59.5714;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=4029;QR=2470;RO=63;RPL=0;RPP=224.5;RPPR=139.813;RPR=102;RUN=1;SAF=102;SAP=224.5;SAR=0;SRF=63;SRP=139.813;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:45:12,33:12:475:33:1285:-33.2744,0,-28.7718 0/1:48:16,32:16:630:32:1275:-32.5095,0,-42.5826 0/1:44:22,22:22:864:22:888:-19.1785,0,-64.8257 0/1:28:13,15:13:501:15:581:-13.6481,0,-36.9981 dDocent_Contig_3511 136 . C T 445.168 . AB=0.220779;ABP=55.1538;AC=3;AF=0.375;AN=8;AO=17;CIGAR=1X3M2X;DP=77;DPB=77;DPRA=0;EPP=39.9253;EPPR=120.27;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=6.93889e-18;PAIRED=0;PAIREDR=0.87037;PAO=0;PQA=0;PQR=0;PRO=0;QA=668;QR=2121;RO=54;RPL=0;RPP=39.9253;RPPR=120.27;RPR=17;RUN=1;SAF=0;SAP=39.9253;SAR=17;SRF=0;SRP=120.27;SRR=54;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:14:11,0,3:11:434:0,3:0,118:-6.7883,-10.0996,-45.8106,0,-36.1042,-35.2011 0|1:23:14,0,8:14:555:0,8:0,317:-21.936,-26.1504,-71.8381,0,-45.7449,-43.3367 0|1:25:21,0,4:21:827:0,4:0,155:-6.79898,-13.1206,-81.16,0,-68.4276,-67.2235 0|0:15:8,5,2:8:305:5,2:199,78:-13.9833,0,-23.5061,-9.98217,-18.5979,-34.3881 dDocent_Contig_3513 25 . C T 7364.64 . AB=0.538462;ABP=8.85657;AC=4;AF=0.5;AN=8;AO=245;CIGAR=1X3M1X;DP=455;DPB=455;DPRA=0;EPP=535.021;EPPR=454.677;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.980769;PAO=0;PQA=0;PQR=0;PRO=0;QA=9751;QR=8217;RO=208;RPL=0;RPP=535.021;RPPR=454.677;RPR=245;RUN=1;SAF=245;SAP=535.021;SAR=0;SRF=208;SRP=454.677;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:160:63,97:63:2504:97:3845:-297.908,0,-177.346 0|1:143:60,83:60:2370:83:3321:-255.907,0,-170.417 0|1:102:65,37:65:2558:37:1474:-102.209,0,-199.674 0|1:50:20,28:20:785:28:1111:-85.4306,0,-56.1221 dDocent_Contig_3514 11 . G A 179.231 . AB=0.115854;ABP=213.219;AC=3;AF=0.375;AN=8;AO=19;CIGAR=1X;DP=186;DPB=186;DPRA=2.48485;EPP=44.2683;EPPR=365.646;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=764;QR=6654;RO=167;RPL=0;RPP=44.2683;RPPR=365.646;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=167;SRP=365.646;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:60:55,5:55:2176:5:201:-0.408718,0,-177.953 0/1:61:54,7:54:2183:7:282:-7.38865,0,-178.272 0/1:43:36,7:36:1425:7:281:-12.7173,0,-115.548 0/0:22:22,0:22:870:0:0:0,-6.62266,-78.6011 dDocent_Contig_3515 12 . G C 101.324 . AB=0.166667;ABP=37.7539;AC=1;AF=0.125;AN=8;AO=10;CIGAR=1X;DP=149;DPB=149;DPRA=0.77037;EPP=24.725;EPPR=304.845;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.647482;PAO=0;PQA=0;PQR=0;PRO=0;QA=404;QR=5516;RO=139;RPL=0;RPP=24.725;RPPR=304.845;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=139;SRP=304.845;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:45:45,0:45:1790:0:0:0,-13.5463,-161.32 0/0:43:40,3:40:1590:3:122:0,-1.5718,-131.964 0/1:36:30,6:30:1201:6:241:-11.2292,0,-97.5208 0/0:25:24,1:24:935:1:41:0,-3.43118,-80.3553 dDocent_Contig_3516 72 . A G 69.48 . AB=0.135135;ABP=88.5781;AC=1;AF=0.125;AN=8;AO=10;CIGAR=1X;DP=194;DPB=194;DPRA=1.85;EPP=24.725;EPPR=402.561;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=330;QR=6010;RO=184;RPL=10;RPP=24.725;RPPR=402.561;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=184;SRP=402.561;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:74:64,10:64:2144:10:330:-7.74388,0,-170.951 0/0:34:34,0:34:1130:0:0:0,-10.235,-101.998 0/0:65:65,0:65:2078:0:0:0,-19.5669,-187.287 0/0:21:21,0:21:658:0:0:0,-6.32163,-59.519 dDocent_Contig_3517 1 . N G 76.9006 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=4.60517;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:81:-7.68573,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_3518 29 . G A 4873.71 . AB=0.743902;ABP=87.7507;AC=5;AF=0.625;AN=8;AO=155;CIGAR=2X;DP=197;DPB=197;DPRA=0;EPP=339.589;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=58.6429;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5992;QR=1591;RO=42;RPL=0;RPP=339.589;RPPR=94.2121;RPR=155;RUN=1;SAF=155;SAP=339.589;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:33:0,33:0:0:33:1266:-114.219,-9.93399,0 0|1:90:11,79:11:418:79:3045:-247.091,0,-10.8782 0|1:50:18,32:18:678:32:1247:-97.4632,0,-46.1582 0|1:24:13,11:13:495:11:434:-32.19,0,-37.6702 dDocent_Contig_3519 32 . C A 584.101 . AB=0.265957;ABP=47.7334;AC=2;AF=0.25;AN=8;AO=29;CIGAR=1X;DP=235;DPB=235;DPRA=0.890625;EPP=65.983;EPPR=450.334;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1142;QR=8197;RO=206;RPL=0;RPP=65.983;RPPR=450.334;RPR=29;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=206;SRP=450.334;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:70:48,22:48:1933:22:858:-56.456,0,-153.095 0/0:77:73,4:73:2903:4:162:0,-8.21235,-246.402 0/0:64:64,0:64:2512:0:0:0,-19.2659,-226.209 0/1:24:21,3:21:849:3:122:-4.14777,0,-69.498 dDocent_Contig_3520 41 . G A 4463.02 . AB=0.341365;ABP=111.863;AC=4;AF=0.5;AN=8;AO=170;CIGAR=1X;DP=498;DPB=498;DPRA=0;EPP=372.161;EPPR=715.253;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6670;QR=13118;RO=328;RPL=0;RPP=372.161;RPPR=715.253;RPR=170;RUN=1;SAF=170;SAP=372.161;SAR=0;SRF=328;SRP=715.253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:151:114,37:114:4565:37:1442:-84.5755,0,-365.31 0/1:158:86,72:86:3464:72:2842:-208.343,0,-264.225 0/1:134:84,50:84:3330:50:1985:-138.511,0,-259.409 0/1:55:44,11:44:1759:11:401:-19.8625,0,-141.972 dDocent_Contig_3521 59 . T C 4116.08 . AB=0.161585;ABP=329.287;AC=2;AF=0.25;AN=8;AO=53;CIGAR=1X24M;DP=328;DPB=330.48;DPRA=0;EPP=118.098;EPPR=135.47;GTI=0;LEN=1;MEANALT=7;MQM=60;MQMR=60;NS=4;NUMALT=6;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=15.5;PRO=0.5;QA=2053;QR=2177;RO=61;RPL=53;RPP=118.098;RPPR=135.47;RPR=0;RUN=1;SAF=53;SAP=118.098;SAR=0;SRF=61;SRP=135.47;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:148:18,65,8,3,10,10,25:18:632:65,8,3,10,10,25:2164,317,96,317,333,992:-199.939,-30.2397,-62.1091,-179.261,-55.5787,-228.291,-197.623,-73.943,-222.965,-248.158,-179.848,-56.1697,-205.19,-223.552,-228.275,-178.408,-54.7288,-203.75,-222.112,-204.337,-226.836,-123.687,0,-149.03,-167.393,-149.617,-148.177,-167.601 0|0:104:20,54,0,6,0,0,13:20:719:54,0,6,0,0,13:1820,0,208,0,0,478:-141.477,0,-42.418,-147.497,-58.6736,-206.161,-130.589,-41.7653,-189.254,-187.447,-147.497,-58.6736,-206.161,-189.254,-206.161,-147.497,-58.6736,-206.161,-189.254,-206.161,-206.161,-108.43,-19.6024,-167.096,-150.188,-167.096,-167.096,-163.183 0|1:51:17,9,6,0,6,0,12:17:612:9,6,0,6,0,12:307,235,0,186,0,462:-32.8244,-13.0379,-60.2607,-18.611,-43.6412,-66.7424,-37.9419,-62.97,-68.5486,-87.8771,-23.024,-48.0502,-53.6268,-72.9549,-71.1487,-37.9419,-62.97,-68.5486,-87.8771,-72.9549,-87.8771,0,-25.033,-30.6092,-49.9405,-35.0195,-49.9405,-46.3282 0|0:25:6,16,0,0,0,0,3:6:214:16,0,0,0,0,3:545,0,0,0,0,121:-42.358,0,-12.5977,-44.1642,-17.4142,-61.6107,-44.1642,-17.4142,-61.6107,-61.6107,-44.1642,-17.4142,-61.6107,-61.6107,-61.6107,-44.1642,-17.4142,-61.6107,-61.6107,-61.6107,-61.6107,-34.1801,-7.42447,-51.6295,-51.6295,-51.6295,-51.6295,-50.7264 dDocent_Contig_3522 98 . N T 805.648 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=28;CIGAR=1X;DP=28;DPB=28;DPRA=0;EPP=63.8115;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=55.6786;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=0.821429;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=900;QR=0;RO=0;RPL=28;RPP=63.8115;RPPR=0;RPR=0;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:7:0,7:0:0:7:221:-20.1978,-2.10721,0 1/1:5:0,5:0:0:5:154:-14.1623,-1.50515,0 1/1:10:0,10:0:0:10:333:-30.293,-3.0103,0 1/1:6:0,6:0:0:6:192:-15.3095,-1.80618,0 dDocent_Contig_3523 27 . C T 1221.49 . AB=0.204861;ABP=220.912;AC=4;AF=0.5;AN=8;AO=59;CIGAR=1X;DP=288;DPB=288;DPRA=0;EPP=131.127;EPPR=500.277;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=0.983051;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2361;QR=9171;RO=229;RPL=0;RPP=131.127;RPPR=500.277;RPR=59;RUN=1;SAF=59;SAP=131.127;SAR=0;SRF=229;SRP=500.277;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:113:97,16:97:3872:16:623:-22.378,0,-314.464 0/1:121:101,20:101:4057:20:813:-37.0598,0,-328.665 0/1:36:21,15:21:838:15:600:-43.4995,0,-64.8926 0/1:18:10,8:10:404:8:325:-24.2011,0,-31.3015 dDocent_Contig_3524 22 . A G 631.725 . AB=0.165919;ABP=219.194;AC=2;AF=0.25;AN=8;AO=38;CIGAR=1X;DP=292;DPB=292;DPRA=1.87879;EPP=85.5263;EPPR=554.564;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.992126;PAO=0;PQA=0;PQR=0;PRO=0;QA=1500;QR=10124;RO=254;RPL=0;RPP=85.5263;RPPR=554.564;RPR=38;RUN=1;SAF=38;SAP=85.5263;SAR=0;SRF=254;SRP=554.564;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:115:91,24:91:3646:24:939:-50.1908,0,-293.537 0/1:108:95,13:95:3794:13:526:-15.1756,0,-308.957 0/0:44:44,0:44:1739:0:0:0,-13.2453,-156.733 0/0:25:24,1:24:945:1:35:0,-4.02712,-81.8527 dDocent_Contig_3525 23 . G A 6919.31 . AB=0.528345;ABP=6.08778;AC=4;AF=0.5;AN=8;AO=233;CIGAR=1X;DP=441;DPB=441;DPRA=0;EPP=508.963;EPPR=454.677;GTI=0;LEN=1;MEANALT=1;MQM=59.691;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.987124;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=9229;QR=8177;RO=208;RPL=0;RPP=508.963;RPPR=454.677;RPR=233;RUN=1;SAF=233;SAP=508.963;SAR=0;SRF=208;SRP=454.677;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:104:64,40:64:2564:40:1579:-111.039,0,-199.586 0/1:185:79,106:79:3092:106:4203:-322.004,0,-222.679 0/1:92:31,61:31:1213:61:2397:-187.705,0,-81.7407 0/1:60:34,26:34:1308:26:1050:-76.1731,0,-99.9207 dDocent_Contig_3526 16 . T A 4219.79 . AB=0.733333;ABP=59.7581;AC=5;AF=0.625;AN=8;AO=133;CIGAR=1X;DP=168;DPB=168;DPRA=0;EPP=291.816;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1.5;MQM=59.9774;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.984962;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5198;QR=1224;RO=33;RPL=0;RPP=291.816;RPPR=74.6689;RPR=133;RUN=1;SAF=133;SAP=291.816;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:52:13,38:13:480:38:1491:-118.821,0,-27.9155 1/1:48:2,45:2:76:45:1742:-149.785,-7.33328,0 0/1:42:8,34:8:299:34:1356:-109.654,0,-14.6224 0/1:26:10,16:10:369:16:609:-47.311,0,-25.7309 dDocent_Contig_3527 22 . T C 5592.75 . AB=0.560976;ABP=13.6028;AC=4;AF=0.5;AN=8;AO=184;CIGAR=1X;DP=328;DPB=328;DPRA=0;EPP=402.561;EPPR=315.702;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7358;QR=5709;RO=144;RPL=0;RPP=402.561;RPPR=315.702;RPR=184;RUN=1;SAF=184;SAP=402.561;SAR=0;SRF=144;SRP=315.702;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:137:81,56:81:3222:56:2249:-161.33,0,-248.804 0/1:105:36,69:36:1410:69:2796:-220.125,0,-95.5375 0/1:56:17,39:17:669:39:1569:-124.583,0,-43.6788 0/1:30:10,20:10:408:20:744:-58.2258,0,-28.0497 dDocent_Contig_3528 84 . T A 499.061 . AB=0.229508;ABP=80.5425;AC=3;AF=0.375;AN=8;AO=29;CIGAR=1X;DP=177;DPB=177;DPRA=0;EPP=65.983;EPPR=324.388;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1028;QR=5353;RO=148;RPL=29;RPP=65.983;RPPR=324.388;RPR=0;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=148;SRP=324.388;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:73:58,15:58:2122:15:532:-26.2357,0,-169.264 0/0:55:54,1:54:1947:1:37:0,-12.8588,-171.802 0/1:35:24,11:24:865:11:385:-24.4465,0,-67.6333 0/1:14:12,2:12:419:2:74:-2.81146,0,-33.827 dDocent_Contig_3529 30 . G A 16308.1 . AB=0.664987;ABP=190.741;AC=4;AF=0.5;AN=8;AO=528;CIGAR=1X;DP=794;DPB=794;DPRA=0;EPP=1149.55;EPPR=580.622;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=20837;QR=10539;RO=266;RPL=0;RPP=1149.55;RPPR=580.622;RPR=528;RUN=1;SAF=528;SAP=1149.55;SAR=0;SRF=266;SRP=580.622;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:301:116,185:116:4575:185:7209:-557.884,0,-321.102 0/1:243:65,178:65:2585:178:7111:-566.502,0,-159.639 0/1:152:48,104:48:1905:104:4112:-324.313,0,-125.905 0/1:98:37,61:37:1474:61:2405:-187.1,0,-103.41 dDocent_Contig_3531 19 . T C 981.862 . AB=0.256098;ABP=87.7507;AC=3;AF=0.375;AN=8;AO=42;CIGAR=2X;DP=171;DPB=171;DPRA=7.80952;EPP=94.2121;EPPR=283.13;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1668;QR=5095;RO=129;RPL=0;RPP=94.2121;RPPR=283.13;RPR=42;RUN=1;SAF=42;SAP=94.2121;SAR=0;SRF=129;SRP=283.13;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:80:51,29:51:2006:29:1153:-79.97,0,-156.659 0|1:65:57,8:57:2257:8:315:-9.14802,0,-183.737 0|1:19:14,5:14:555:5:200:-12.66,0,-44.5743 0|0:7:7,0:7:277:0:0:0,-2.10721,-25.2977 dDocent_Contig_3532 16 . T A 587.333 . AB=0.146953;ABP=305.063;AC=2;AF=0.25;AN=8;AO=43;CIGAR=1X;DP=478;DPB=478;DPRA=2.0098;EPP=96.3836;EPPR=947.601;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1682;QR=17207;RO=435;RPL=0;RPP=96.3836;RPPR=947.601;RPR=43;RUN=1;SAF=43;SAP=96.3836;SAR=0;SRF=435;SRP=947.601;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:174:148,26:148:5873:26:1018:-39.5456,0,-476.006 0/0:131:129,2:129:5110:2:79:0,-31.9373,-452.301 0/1:105:90,15:90:3538:15:585:-21.3815,0,-286.878 0/0:68:68,0:68:2686:0:0:0,-20.47,-241.881 dDocent_Contig_3533 14 . A T 167.855 . AB=0.204545;ABP=36.372;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X;DP=269;DPB=269;DPRA=0.586667;EPP=22.5536;EPPR=565.422;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.6988;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.988417;PAO=0;PQA=0;PQR=0;PRO=0;QA=342;QR=10195;RO=259;RPL=0;RPP=22.5536;RPPR=565.422;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=259;SRP=565.422;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:79:79,0:79:3096:0:0:0,-23.7814,-278.036 0/0:117:116,0:116:4565:0:0:0,-34.9195,-410.403 0/1:44:35,9:35:1384:9:342:-17.8824,0,-110.175 0/0:29:29,0:29:1150:0:0:0,-8.72987,-103.78 dDocent_Contig_3534 98 . N G 118.19 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=0;RO=0;RPL=4;RPP=11.6962;RPPR=0;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1:0,1:0:0:1:19:-1.89997,-0.30103,0 1/1:3:0,3:0:0:3:103:-9.60997,-0.90309,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_3535 68 . G C 133.006 . AB=0.194444;ABP=32.2045;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=107;DPB=107;DPRA=1.52113;EPP=18.2106;EPPR=220.158;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=273;QR=3987;RO=100;RPL=7;RPP=18.2106;RPPR=220.158;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=100;SRP=220.158;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:29,7:29:1154:7:273:-14.0965,0,-93.3055 0/0:25:25,0:25:987:0:0:0,-7.52575,-89.1307 0/0:30:30,0:30:1213:0:0:0,-9.0309,-109.442 0/0:16:16,0:16:633:0:0:0,-4.81648,-57.3042 dDocent_Contig_3537 9 . C T 3598.1 . AB=0.39645;ABP=34.4902;AC=4;AF=0.5;AN=8;AO=134;CIGAR=1X;DP=338;DPB=338;DPRA=0;EPP=293.988;EPPR=445.991;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.970588;PAO=0;PQA=0;PQR=0;PRO=0;QA=5171;QR=7860;RO=204;RPL=0;RPP=293.988;RPPR=445.991;RPR=134;RUN=1;SAF=134;SAP=293.988;SAR=0;SRF=204;SRP=445.991;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:81:28,53:28:1083:53:2044:-159.809,0,-73.3916 0/1:160:111,49:111:4288:49:1888:-122,0,-337.817 0/1:62:47,15:47:1815:15:580:-33.8786,0,-144.936 0/1:35:18,17:18:674:17:659:-49.1111,0,-50.4525 dDocent_Contig_3538 60 . C A 2216.07 . AB=0.32197;ABP=75.6888;AC=4;AF=0.5;AN=8;AO=85;CIGAR=1X;DP=264;DPB=264;DPRA=0;EPP=187.585;EPPR=391.704;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3387;QR=7110;RO=179;RPL=85;RPP=187.585;RPPR=391.704;RPR=0;RUN=1;SAF=85;SAP=187.585;SAR=0;SRF=179;SRP=391.704;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:79:50,29:50:1981:29:1164:-81.258,0,-154.701 0/1:89:59,30:59:2351:30:1188:-80.4051,0,-184.951 0/1:62:52,10:52:2047:10:393:-17.0573,0,-165.755 0/1:34:18,16:18:731:16:642:-47.8762,0,-55.8796 dDocent_Contig_3539 49 . A G 100.211 . AB=0.125;ABP=90.9549;AC=1;AF=0.125;AN=8;AO=10;CIGAR=1X;DP=171;DPB=171;DPRA=1.03571;EPP=24.725;EPPR=352.617;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=398;QR=6446;RO=161;RPL=0;RPP=24.725;RPPR=352.617;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=161;SRP=352.617;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:72:63,9:63:2513:9:357:-10.8153,0,-204.632 0/0:38:38,0:38:1520:0:0:0,-11.4391,-137.038 0/0:46:46,0:46:1858:0:0:0,-13.8474,-167.423 0/0:15:14,1:14:555:1:41:0,-0.420883,-46.1967 dDocent_Contig_3540 8 . T A 1291.57 . AB=0.411765;ABP=11.0575;AC=4;AF=0.5;AN=8;AO=49;CIGAR=1X;DP=119;DPB=119;DPRA=0;EPP=109.412;EPPR=155.013;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1873;QR=2709;RO=70;RPL=0;RPP=109.412;RPPR=155.013;RPR=49;RUN=1;SAF=49;SAP=109.412;SAR=0;SRF=70;SRP=155.013;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:35:27,8:27:1048:8:308:-17.5463,0,-84.0913 0/1:27:9,18:9:348:18:683:-53.6747,0,-23.5525 0/1:38:20,18:20:772:18:689:-50.9036,0,-58.369 0/1:19:14,5:14:541:5:193:-12.0219,0,-43.3162 dDocent_Contig_3541 18 . T A 416.115 . AB=0.2;ABP=85.092;AC=1;AF=0.125;AN=8;AO=24;CIGAR=1X;DP=378;DPB=378;DPRA=1.64336;EPP=55.1256;EPPR=769.54;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=0.994334;PAO=0;PQA=0;PQR=0;PRO=0;QA=940;QR=14111;RO=353;RPL=0;RPP=55.1256;RPPR=769.54;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=353;SRP=769.54;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:105:84,21:84:3353:21:819:-42.4073,0,-270.208 0/0:130:126,3:126:5083:3:121:0,-27.9531,-446.04 0/0:102:102,0:102:4029:0:0:0,-30.7051,-362.607 0/0:41:41,0:41:1646:0:0:0,-12.3422,-148.367 dDocent_Contig_3542 28 . A T 3123.54 . AB=0.682432;ABP=45.7942;AC=4;AF=0.5;AN=8;AO=101;CIGAR=1X;DP=148;DPB=148;DPRA=0;EPP=222.329;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4008;QR=1879;RO=47;RPL=0;RPP=222.329;RPPR=105.07;RPR=101;RUN=1;SAF=101;SAP=222.329;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:55:23,32:23:917:32:1273:-98.2804,0,-66.28 0/1:49:14,35:14:559:35:1385:-110.15,0,-35.9016 0/1:25:7,18:7:282:18:713:-56.9694,0,-18.2263 0/1:19:3,16:3:121:16:637:-51.9439,0,-5.56063 dDocent_Contig_3543 12 . C T 84.5164 . AB=0.222222;ABP=15.074;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=78;DPB=78;DPRA=0.9;EPP=11.6962;EPPR=163.699;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=162;QR=2711;RO=74;RPL=0;RPP=11.6962;RPPR=163.699;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=74;SRP=163.699;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:26:26,0:26:963:0:0:0,-7.82678,-86.9821 0/0:29:29,0:29:1058:0:0:0,-8.72987,-95.5274 0/1:18:14,4:14:509:4:162:-9.54842,0,-40.7277 0/0:5:5,0:5:181:0:0:0,-1.50515,-16.6428 dDocent_Contig_3544 18 . G C 94.2155 . AB=0.14;ABP=59.2949;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X;DP=164;DPB=164;DPRA=1.32323;EPP=22.5536;EPPR=339.589;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=348;QR=6172;RO=155;RPL=0;RPP=22.5536;RPPR=339.589;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=155;SRP=339.589;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:55:54,1:54:2158:1:41:0,-12.4621,-190.299 0/0:26:25,1:25:1001:1:27:0,-5.127,-87.6873 0/1:50:43,7:43:1691:7:280:-10.5185,0,-137.356 0/0:33:33,0:33:1322:0:0:0,-9.93399,-119.243 dDocent_Contig_3545 1 . N G 60.4488 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=21.6667;MQMR=0;NS=1;NUMALT=1;ODDS=5.29832;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=117;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:117:-6.04271,-0.90309,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_3548 58 . C A 342.6 . AB=0.1875;ABP=98.0122;AC=1;AF=0.125;AN=8;AO=25;CIGAR=1X;DP=303;DPB=303;DPRA=1.65789;EPP=57.2971;EPPR=606.68;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=916;QR=10706;RO=278;RPL=25;RPP=57.2971;RPPR=606.68;RPR=0;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=278;SRP=606.68;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:68:68,0:68:2603:0:0:0,-20.47,-234.438 0/1:112:91,21:91:3521:21:764:-35.3569,0,-283.244 0/0:77:73,4:73:2811:4:152:0,-9.13105,-239.078 0/0:46:46,0:46:1771:0:0:0,-13.8474,-159.626 dDocent_Contig_3549 16 . C T 2851.65 . AB=0.611842;ABP=19.5249;AC=4;AF=0.5;AN=8;AO=93;CIGAR=2X;DP=152;DPB=152;DPRA=0;EPP=204.957;EPPR=122.441;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3711;QR=2211;RO=55;RPL=0;RPP=204.957;RPPR=122.441;RPR=93;RUN=1;SAF=93;SAP=204.957;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:70:22,45:22:886:45:1788:-140.562,0,-59.4708 0|1:37:18,18:18:726:18:713:-53.5608,0,-54.7309 0|1:20:10,10:10:398:10:404:-30.6998,0,-30.1568 0|1:25:5,20:5:201:20:806:-65.3324,0,-10.9451 dDocent_Contig_3551 34 . G A 67.563 . AB=0.133333;ABP=73.0765;AC=2;AF=0.25;AN=8;AO=20;CIGAR=1X;DP=305;DPB=305;DPRA=0;EPP=38.1882;EPPR=621.88;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=714;QR=11439;RO=285;RPL=0;RPP=46.4397;RPPR=621.88;RPR=20;RUN=1;SAF=1;SAP=38.1882;SAR=19;SRF=285;SRP=621.88;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:151:143,8:143:5759:8:291:0,-18.9164,-491.542 0/0:94:90,4:90:3602:4:142:0,-15.1675,-311.071 0/1:28:23,5:23:924:5:177:-7.84814,0,-75.0351 0/1:32:29,3:29:1154:3:104:-0.0698455,0,-94.5063 dDocent_Contig_3552 110 . C T 47.4998 . AB=0.125;ABP=81.1833;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=167;DPB=167;DPRA=1.86408;EPP=20.3821;EPPR=348.274;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=272;QR=5127;RO=159;RPL=0;RPP=20.3821;RPPR=348.274;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=348.274;SRR=159;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:64:56,8:56:1785:8:272:-5.54586,0,-141.653 0/0:30:30,0:30:971:0:0:0,-9.0309,-87.6867 0/0:37:37,0:37:1231:0:0:0,-11.1381,-111.088 0/0:36:36,0:36:1140:0:0:0,-10.8371,-102.884 dDocent_Contig_3554 11 . T C 329.206 . AB=0.183673;ABP=88.1852;AC=2;AF=0.25;AN=8;AO=19;CIGAR=1X;DP=178;DPB=178;DPRA=0.689655;EPP=44.2683;EPPR=348.274;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=751;QR=6139;RO=159;RPL=0;RPP=44.2683;RPPR=348.274;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=159;SRP=348.274;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:67:55,12:55:2102:12:474:-22.835,0,-169.221 0/0:58:58,0:58:2258:0:0:0,-17.4597,-203.418 0/0:22:21,1:21:795:1:41:0,-2.52809,-67.7691 0/1:31:25,6:25:984:6:236:-12.2794,0,-79.5322 dDocent_Contig_3555 15 . C A 2653.49 . AB=0.226236;ABP=345.426;AC=4;AF=0.5;AN=8;AO=119;CIGAR=1X;DP=526;DPB=526;DPRA=0;EPP=261.416;EPPR=886.8;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4751;QR=16329;RO=407;RPL=0;RPP=261.416;RPPR=886.8;RPR=119;RUN=1;SAF=119;SAP=261.416;SAR=0;SRF=407;SRP=886.8;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:177:141,36:141:5650:36:1456:-78.0035,0,-455.011 0/1:182:124,58:124:4989:58:2310:-153.269,0,-394.088 0/1:100:89,11:89:3578:11:423:-8.31338,0,-291.933 0/1:67:53,14:53:2112:14:562:-30.7531,0,-170.097 dDocent_Contig_3557 51 . A C 457.77 . 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T G 2983.29 . AB=0.431452;ABP=13.1322;AC=4;AF=0.5;AN=8;AO=107;CIGAR=1X;DP=248;DPB=248;DPRA=0;EPP=235.358;EPPR=309.188;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4187;QR=5685;RO=141;RPL=0;RPP=235.358;RPPR=309.188;RPR=107;RUN=1;SAF=107;SAP=235.358;SAR=0;SRF=141;SRP=309.188;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:98:52,46:52:2089:46:1811:-133.703,0,-158.69 0/1:48:26,22:26:1058:22:817:-59.3774,0,-81.0576 0/1:47:22,25:22:883:25:1009:-76.9548,0,-65.6275 0/1:55:41,14:41:1655:14:550:-33.2833,0,-132.616 dDocent_Contig_3563 130 . A G 2037.96 . 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AB=0.203704;ABP=44.1879;AC=1;AF=0.125;AN=8;AO=23;CIGAR=1X;DP=461;DPB=461;DPRA=0;EPP=52.9542;EPPR=954.115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=924;QR=17203;RO=438;RPL=0;RPP=52.9542;RPPR=954.115;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=438;SRP=954.115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:145:142,3:142:5545:3:122:0,-32.2769,-487.531 0/0:128:126,2:126:4959:2:82:0,-30.7522,-438.428 0/0:134:127,7:127:5013:7:277:0,-15.0417,-425.779 0/1:54:43,11:43:1686:11:443:-23.9697,0,-135.714 dDocent_Contig_3566 58 . A T 369.956 . 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AB=0.211268;ABP=54.4222;AC=3;AF=0.375;AN=8;AO=15;CIGAR=1X;DP=89;DPB=89;DPRA=1.31481;EPP=35.5824;EPPR=163.699;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.972973;PAO=0;PQA=0;PQR=0;PRO=0;QA=514;QR=2679;RO=74;RPL=0;RPP=35.5824;RPPR=163.699;RPR=15;RUN=1;SAF=0;SAP=35.5824;SAR=15;SRF=0;SRP=163.699;SRR=74;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:18:18,0:18:652:0:0:0,-5.41854,-59.0107 0/1:38:27,11:27:980:11:374:-22.5494,0,-77.0762 0/1:22:19,3:19:697:3:105:-3.1735,0,-56.4388 0/1:11:10,1:10:350:1:35:-0.187299,0,-28.5245 dDocent_Contig_3568 21 . A G 431.919 . AB=0.171233;ABP=140.081;AC=4;AF=0.5;AN=8;AO=25;CIGAR=1X;DP=146;DPB=146;DPRA=0;EPP=57.2971;EPPR=265.758;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=57.6281;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.950413;PAO=0;PQA=0;PQR=0;PRO=0;QA=1007;QR=4838;RO=121;RPL=0;RPP=57.2971;RPPR=265.758;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=121;SRP=265.758;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:56:49,7:49:1961:7:279:-8.62256,0,-154.225 0/1:46:41,5:41:1635:5:201:-4.62351,0,-124.068 0/1:27:17,10:17:678:10:406:-28.7728,0,-53.2203 0/1:17:14,3:14:564:3:121:-6.16269,0,-45.9855 dDocent_Contig_3569 28 . G A 2198.38 . AB=0.256983;ABP=186.651;AC=4;AF=0.5;AN=8;AO=92;CIGAR=1X;DP=358;DPB=358;DPRA=0;EPP=202.786;EPPR=580.622;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.956522;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3682;QR=10581;RO=266;RPL=0;RPP=202.786;RPPR=580.622;RPR=92;RUN=1;SAF=92;SAP=202.786;SAR=0;SRF=266;SRP=580.622;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:124:107,17:107:4273:17:678:-24.0216,0,-347.197 0/1:128:101,27:101:3999:27:1088:-59.6727,0,-321.372 0/1:72:36,36:36:1428:36:1432:-107.458,0,-107.099 0/1:34:22,12:22:881:12:484:-33.6755,0,-69.3627 dDocent_Contig_3570 16 . G C 9194.25 . AB=0.715328;ABP=168.534;AC=4;AF=0.5;AN=8;AO=294;CIGAR=1X;DP=411;DPB=411;DPRA=0;EPP=641.423;EPPR=257.073;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.996599;PAIREDR=0.982906;PAO=0;PQA=0;PQR=0;PRO=0;QA=11642;QR=4622;RO=117;RPL=0;RPP=641.423;RPPR=257.073;RPR=294;RUN=1;SAF=294;SAP=641.423;SAR=0;SRF=117;SRP=257.073;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:126:34,92:34:1337:92:3732:-297.94,0,-82.6643 0/1:143:45,98:45:1774:98:3873:-305.517,0,-116.83 0/1:91:29,62:29:1157:62:2426:-191.092,0,-77.017 0/1:51:9,42:9:354:42:1611:-129.865,0,-16.8681 dDocent_Contig_3571 25 . G A 54.4746 . AB=0.147059;ABP=39.7976;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X1M1X2M1X;DP=108;DPB=108;DPRA=1.37838;EPP=13.8677;EPPR=224.5;GTI=0;LEN=1;MEANALT=1;MQM=40;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.813725;PAO=0;PQA=0;PQR=0;PRO=0;QA=191;QR=3962;RO=102;RPL=0;RPP=13.8677;RPPR=224.5;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=102;SRP=224.5;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:34:29,5:29:1149:5:191:-6.24333,0,-93.4639 0|0:29:29,0:29:1118:0:0:0,-8.72987,-100.912 0|0:26:26,0:26:991:0:0:0,-7.82678,-89.4943 0|0:19:18,0:18:704:0:0:0,-5.41854,-63.2919 dDocent_Contig_3572 85 . T A 794.455 . AB=0.271429;ABP=66.5414;AC=2;AF=0.25;AN=8;AO=41;CIGAR=1X;DP=303;DPB=303;DPRA=0.560472;EPP=92.0407;EPPR=571.936;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1479;QR=9570;RO=262;RPL=41;RPP=92.0407;RPPR=571.936;RPR=0;RUN=1;SAF=41;SAP=92.0407;SAR=0;SRF=262;SRP=571.936;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:113:113,0:113:4135:0:0:0,-34.0164,-372.307 0/1:124:90,34:90:3264:34:1220:-72.7738,0,-256.632 0/0:50:47,3:47:1727:3:111:0,-4.69758,-145.355 0/1:16:12,4:12:444:4:148:-8.86549,0,-35.4899 dDocent_Contig_3573 41 . A C 787.493 . AB=0.236111;ABP=90.1105;AC=1;AF=0.125;AN=8;AO=34;CIGAR=1X;DP=449;DPB=449;DPRA=1.41639;EPP=76.8404;EPPR=904.171;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1366;QR=16429;RO=415;RPL=0;RPP=76.8404;RPPR=904.171;RPR=34;RUN=1;SAF=34;SAP=76.8404;SAR=0;SRF=415;SRP=904.171;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:136:136,0:136:5405:0:0:0,-40.9401,-486.299 0/1:144:110,34:110:4313:34:1366:-79.8462,0,-344.789 0/0:104:104,0:104:4150:0:0:0,-31.3071,-373.475 0/0:65:65,0:65:2561:0:0:0,-19.5669,-230.637 dDocent_Contig_3574 66 . T A 151.487 . AB=0.12963;ABP=131.69;AC=1;AF=0.125;AN=8;AO=15;CIGAR=1X;DP=273;DPB=273;DPRA=2.5;EPP=35.5824;EPPR=563.25;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=576;QR=10001;RO=258;RPL=15;RPP=35.5824;RPPR=563.25;RPR=0;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=258;SRP=563.25;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:87:86,1:86:3367:1:38:0,-22.3923,-299.311 0/1:108:94,14:94:3601:14:538:-16.2456,0,-291.642 0/0:44:44,0:44:1715:0:0:0,-13.2453,-154.581 0/0:34:34,0:34:1318:0:0:0,-10.235,-118.891 dDocent_Contig_3575 12 . G A 7968.14 . AB=0.600917;ABP=41.5788;AC=4;AF=0.5;AN=8;AO=262;CIGAR=1X;DP=436;DPB=436;DPRA=0;EPP=571.936;EPPR=380.846;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.954198;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=10361;QR=6922;RO=174;RPL=0;RPP=571.936;RPPR=380.846;RPR=262;RUN=1;SAF=262;SAP=571.936;SAR=0;SRF=174;SRP=380.846;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:119:52,67:52:2053:67:2659:-203.62,0,-149.137 0/1:127:44,83:44:1754:83:3312:-259.916,0,-119.851 0/1:125:56,69:56:2231:69:2692:-204.785,0,-163.324 0/1:65:22,43:22:884:43:1698:-133.483,0,-60.3029 dDocent_Contig_3576 93 . T G 4508.04 . AB=0.336538;ABP=147.831;AC=4;AF=0.5;AN=8;AO=210;CIGAR=1X;DP=624;DPB=624;DPRA=0;EPP=459.02;EPPR=902;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.997585;PAO=0;PQA=0;PQR=0;PRO=0;QA=7139;QR=13398;RO=414;RPL=210;RPP=459.02;RPPR=902;RPR=0;RUN=1;SAF=210;SAP=459.02;SAR=0;SRF=414;SRP=902;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:168:107,61:107:3409:61:2041:-133.387,0,-256.469 0/1:183:123,60:123:4066:60:2068:-131.307,0,-311.075 0/1:161:100,61:100:3145:61:2091:-139.998,0,-234.822 0/1:112:84,28:84:2778:28:939:-51.1006,0,-216.563 dDocent_Contig_3577 9 . T C 168.12 . AB=0.222222;ABP=27.1378;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=104;DPB=104;DPRA=1.58824;EPP=20.3821;EPPR=211.472;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=312;QR=3681;RO=96;RPL=0;RPP=20.3821;RPPR=211.472;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=96;SRP=211.472;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:28,8:28:1056:8:312:-17.6078,0,-84.5058 0/0:27:27,0:27:1050:0:0:0,-8.12781,-94.8068 0/0:31:31,0:31:1187:0:0:0,-9.33193,-107.127 0/0:10:10,0:10:388:0:0:0,-3.0103,-35.2779 dDocent_Contig_3579 1 . N G 77.84 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=4.60517;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:82:-7.77968,-0.60206,0 dDocent_Contig_3581 98 . N G 3986.41 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=129;CIGAR=1X;DP=129;DPB=129;DPRA=0;EPP=283.13;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=4409;QR=0;RO=0;RPL=129;RPP=283.13;RPPR=0;RPR=0;RUN=1;SAF=129;SAP=283.13;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:36:0,36:0:0:36:1238:-111.724,-10.8371,0 1/1:40:0,40:0:0:40:1353:-122.066,-12.0412,0 1/1:37:0,37:0:0:37:1268:-114.422,-11.1381,0 1/1:16:0,16:0:0:16:550:-49.8261,-4.81648,0 dDocent_Contig_3582 59 . A T 3406.17 . AB=0.449438;ABP=8.93915;AC=5;AF=0.625;AN=8;AO=120;CIGAR=1X1M1X4M;DP=267;DPB=265.143;DPRA=0;EPP=263.587;EPPR=289.645;GTI=0;LEN=1;MEANALT=1.75;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.966667;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4470;QR=4931;RO=132;RPL=120;RPP=263.587;RPPR=289.645;RPR=0;RUN=1;SAF=120;SAP=263.587;SAR=0;SRF=132;SRP=289.645;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:50:7,13,30:7:258:13,30:488,1149:-111.076,-73.2111,-90.3935,-18.8831,0,-30.9484 0|1:88:50,0,37:50:1879:0,37:0,1383:-98.3949,-113.446,-267.389,0,-154.149,-143.011 0|1:80:50,0,29:50:1852:0,29:0,1044:-70.1096,-85.1611,-236.686,0,-151.528,-142.798 0|1:49:25,0,24:25:942:0,24:0,894:-66.0255,-73.5512,-150.746,0,-77.5687,-70.344 dDocent_Contig_3583 1 . N G 119.937 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=121;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1:0,1:0:0:1:41:-4.09457,-0.30103,0 ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:80:-7.59157,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_3584 14 . C T 3961.58 . AB=0.68984;ABP=61.5472;AC=4;AF=0.5;AN=8;AO=129;CIGAR=1X;DP=187;DPB=187;DPRA=0;EPP=283.13;EPPR=128.956;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5071;QR=2307;RO=58;RPL=0;RPP=283.13;RPPR=128.956;RPR=129;RUN=1;SAF=129;SAP=283.13;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:86:29,57:29:1174:57:2249:-176.686,0,-80.0461 0/1:59:16,43:16:630:43:1720:-137.262,0,-39.2695 0/1:28:11,17:11:426:17:642:-49.6711,0,-30.251 0/1:14:2,12:2:77:12:460:-37.5259,0,-3.09378 dDocent_Contig_3585 83 . C A 8849.72 . AB=0.727273;ABP=72.1026;AC=6;AF=0.75;AN=8;AO=314;CIGAR=1X;DP=372;DPB=372;DPRA=0;EPP=684.853;EPPR=128.956;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=10924;QR=2009;RO=58;RPL=314;RPP=684.853;RPPR=128.956;RPR=0;RUN=1;SAF=314;SAP=684.853;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:101:6,95:6:199:95:3302:-279.168,-12.1692,0 1/1:117:10,107:10:356:107:3732:-303.706,-2.83905,0 0/1:94:32,62:32:1150:62:2154:-165.83,0,-75.5133 0/1:60:10,50:10:304:50:1736:-138.463,0,-9.59204 dDocent_Contig_3586 15 . T C 342.715 . AB=0.188889;ABP=78.674;AC=1;AF=0.125;AN=8;AO=17;CIGAR=1X;DP=266;DPB=266;DPRA=1.53409;EPP=39.9253;EPPR=543.707;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=0.987952;PAO=0;PQA=0;PQR=0;PRO=0;QA=687;QR=9953;RO=249;RPL=0;RPP=39.9253;RPPR=543.707;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=249;SRP=543.707;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:90:73,17:73:2930:17:687:-35.0674,0,-236.693 0/0:79:79,0:79:3140:0:0:0,-23.7814,-282.666 0/0:62:62,0:62:2482:0:0:0,-18.6639,-223.517 0/0:35:35,0:35:1401:0:0:0,-10.536,-126.339 dDocent_Contig_3587 83 . C T 5257.09 . AB=0.828571;ABP=68.6508;AC=6;AF=0.75;AN=8;AO=171;CIGAR=1X;DP=183;DPB=183;DPRA=0;EPP=374.332;EPPR=29.068;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6087;QR=430;RO=12;RPL=171;RPP=374.332;RPPR=29.068;RPR=0;RUN=1;SAF=171;SAP=374.332;SAR=0;SRF=12;SRP=29.068;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:60:0,60:0:0:60:2131:-192.045,-18.0618,0 1/1:53:0,53:0:0:53:1874:-168.93,-15.9546,0 0/1:39:7,32:7:247:32:1147:-91.7958,0,-10.831 0/1:31:5,26:5:183:26:935:-75.1314,0,-7.4949 dDocent_Contig_3588 20 . C T 1602.38 . AB=0.133333;ABP=90.593;AC=4;AF=0.5;AN=8;AO=23;CIGAR=2X;DP=116;DPB=116;DPRA=0;EPP=52.9542;EPPR=85.5263;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=872;QR=1489;RO=38;RPL=0;RPP=52.9542;RPPR=85.5263;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:13:0,0,13,0:0:0:0,13,0:0,485,0:-43.9879,-43.9879,-43.9879,-3.91339,-3.91339,0,-43.9879,-43.9879,-3.91339,-43.9879 1|1:7:0,1,6,0:0:0:1,6,0:40,229,0:-22.4666,-19.169,-18.8679,-3.69465,0,-1.88847,-22.4666,-19.169,-3.69465,-22.4666 0|0:68:23,17,4,24:23:900:17,4,24:679,158,937:-70.0849,-21.0859,-89.9608,-64.0068,-82.0762,-136.794,0,-18.066,-60.9867,-66.7638 0|0:28:15,3,0,10:15:589:3,0,10:120,0,387:-27.2562,-21.8836,-69.4243,-31.7717,-70.3274,-80.2135,0,-38.548,-48.4343,-45.424 dDocent_Contig_3589 55 . T G 10156.6 . AB=0.0432277;ABP=631.855;AC=0;AF=0;AN=8;AO=17;CIGAR=1M1D2M1X2M;DP=468;DPB=703;DPRA=0;EPP=39.9253;EPPR=128.956;GTI=0;LEN=1;MEANALT=3.5;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=623;QR=2210;RO=58;RPL=17;RPP=39.9253;RPPR=128.956;RPR=0;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:142:33,4,62,43:33:1283:4,62,43:141,2282,1547:-197.367,-195.823,-300.057,-20.7378,-114.705,-107.518,-81.108,-175.07,0,-173.603 0|0:155:14,9,109,21:14:506:9,109,21:326,4061,741:-347.213,-324.816,-363.395,-19.0332,-33.7123,-27.514,-291.103,-305.78,0,-326.07 0|0:121:6,2,107,5:6:230:2,107,5:79,4037,155:-342.358,-337.663,-355.938,-13.3149,-25.7032,0,-331.731,-344.107,-19.8006,-349.103 0|0:50:5,2,43,0:5:191:2,43,0:77,1632,0:-132.304,-127.487,-142.556,0,-9.34499,-2.72396,-133.81,-143.158,-15.6682,-149.48 dDocent_Contig_3590 56 . A G 3094.92 . AB=0.710744;ABP=49.688;AC=5;AF=0.625;AN=8;AO=99;CIGAR=1X6M;DP=135;DPB=133.714;DPRA=0;EPP=217.986;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3909;QR=1295;RO=33;RPL=99;RPP=217.986;RPPR=74.6689;RPR=0;RUN=1;SAF=99;SAP=217.986;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:48:8,0,40:8:312:0,40:0,1596:-129.422,-131.83,-157.474,0,-26.0358,-13.9946 0|1:35:9,0,26:9:357:0,26:0,1043:-83.6248,-86.3341,-115.721,0,-29.7842,-21.9574 0|1:38:15,3,20:15:586:3,20:113,777:-59.3257,-54.5837,-101.856,0,-38.9294,-42.1654 1|1:14:1,0,13:1:40:0,13:0,493:-40.7088,-41.0098,-44.3064,-0.218741,-3.91339,0 dDocent_Contig_3591 7 . T C 5792.11 . AB=0.764706;ABP=44.396;AC=6;AF=0.75;AN=8;AO=174;CIGAR=1X;DP=190;DPB=190;DPRA=0;EPP=380.846;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.798851;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6676;QR=606;RO=16;RPL=0;RPP=380.846;RPPR=37.7539;RPR=174;RUN=1;SAF=174;SAP=380.846;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:56:0,56:0:0:56:2148:-193.542,-16.8577,0 1/1:66:0,66:0:0:66:2523:-227.26,-19.868,0 0/1:39:8,31:8:302:31:1193:-95.9269,0,-15.7956 0/1:29:8,21:8:304:21:812:-64.6757,0,-18.9885 dDocent_Contig_3592 79 . G T 65.3345 . AB=0.146341;ABP=47.552;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X;DP=168;DPB=168;DPRA=4.33333;EPP=22.5536;EPPR=348.274;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=329;QR=5794;RO=159;RPL=9;RPP=22.5536;RPPR=348.274;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=159;SRP=348.274;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:54:53,1:53:1948:1:37:0,-12.5578,-171.89 0/0:61:59,2:59:2147:2:74:0,-11.337,-186.461 0/1:41:35,6:35:1255:6:218:-7.63036,0,-100.907 0/0:12:12,0:12:444:0:0:0,-3.61236,-40.3063 dDocent_Contig_3593 199 . G T 27460.1 . AB=0.618257;ABP=32.2846;AC=7;AF=0.875;AN=8;AO=840;CIGAR=1X;DP=954;DPB=954;DPRA=0;EPP=1827.05;EPPR=248.387;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.966667;PAIREDR=0.938053;PAO=0;PQA=0;PQR=0;PRO=0;QA=32149;QR=4285;RO=113;RPL=840;RPP=1827.05;RPPR=248.387;RPR=0;RUN=1;SAF=0;SAP=1827.05;SAR=840;SRF=0;SRP=248.387;SRR=113;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:241:92,149:92:3479:149:5748:-444.722,0,-240.69 1/1:220:0,220:0:0:220:8396:-755.419,-66.2266,0 1/1:255:9,245:9:351:245:9369:-810.968,-44.8994,0 1/1:238:12,226:12:455:226:8636:-735.693,-30.3478,0 dDocent_Contig_3594 7 . C A 46.9474 . AB=0.125;ABP=51.8684;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=214;DPB=214;DPRA=1.51765;EPP=20.3821;EPPR=450.334;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=311;QR=7921;RO=206;RPL=0;RPP=20.3821;RPPR=450.334;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=206;SRP=450.334;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:65:65,0:65:2512:0:0:0,-19.5669,-226.278 0/0:89:86,3:86:3302:3:117:0,-15.8813,-286.408 0/1:40:35,5:35:1350:5:194:-5.79164,0,-109.743 0/0:20:20,0:20:757:0:0:0,-6.0206,-68.4541 dDocent_Contig_3595 98 . N T 952.285 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=31;CIGAR=1X;DP=31;DPB=31;DPRA=0;EPP=70.3259;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1037;QR=0;RO=0;RPL=31;RPP=70.3259;RPPR=0;RPR=0;RUN=1;SAF=31;SAP=70.3259;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:12:0,12:0:0:12:401:-36.4132,-3.61236,0 1/1:3:0,3:0:0:3:101:-9.42373,-0.90309,0 1/1:12:0,12:0:0:12:410:-37.229,-3.61236,0 1/1:4:0,4:0:0:4:125:-11.5597,-1.20412,0 dDocent_Contig_3596 23 . A G 10765.2 . AB=0.898876;ABP=248.997;AC=6;AF=0.75;AN=8;AO=317;CIGAR=1X;DP=336;DPB=336;DPRA=0;EPP=691.367;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=12582;QR=724;RO=18;RPL=0;RPP=691.367;RPPR=42.0968;RPR=317;RUN=1;SAF=317;SAP=691.367;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:106:0,105:0:0:105:4202:-377.747,-31.6082,0 0/1:83:9,74:9:364:74:2930:-238.82,0,-8.13926 0/1:95:9,86:9:360:86:3378:-275.482,0,-4.16482 1/1:52:0,52:0:0:52:2072:-186.66,-15.6536,0 dDocent_Contig_3597 40 . A G 6538.38 . AB=0.06;ABP=339.328;AC=0;AF=0;AN=8;AO=13;CIGAR=1X3M1X1M1X;DP=272;DPB=272;DPRA=0;EPP=31.2394;EPPR=120.27;GTI=0;LEN=1;MEANALT=2.66667;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=498;QR=2131;RO=54;RPL=0;RPP=31.2394;RPPR=120.27;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:90:15,3,70:15:587:3,70:113,2818:-227.74,-222.997,-270.357,0,-39.0098,-27.1951 0|0:110:24,9,77:24:951:9,77:345,3081:-246.571,-225.482,-301.049,0,-49.9739,-55.1067 0|0:44:15,0,29:15:593:0,29:0,1108:-86.7507,-91.2662,-140.072,0,-49.196,-40.4661 0|0:28:0,1,27:0:0:1,27:40,1072:-96.3669,-93.0717,-92.7707,-8.12781,-4.43316,0 dDocent_Contig_3598 24 . G T 2494.17 . AB=0.245455;ABP=64.917;AC=1;AF=0.125;AN=8;AO=27;CIGAR=2M1X;DP=492;DPB=499;DPRA=0;EPP=61.6401;EPPR=758.683;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1044;QR=13826;RO=348;RPL=0;RPP=61.6401;RPPR=758.683;RPR=27;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=348;SRP=758.683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:110:72,0,11,27:72:2861:0,11,27:0,432,1044:-64.0461,-85.7202,-321.263,-50.1949,-285.74,-282.429,0,-235.541,-200.018,-227.414 0|0:173:108,12,53,0:108:4259:12,53,0:474,2107,0:-140.95,-134.462,-481.242,0,-311.394,-334.439,-173.462,-484.855,-350.394,-523.854 0|0:127:102,7,17,0:102:4067:7,17,0:271,679,0:-25.2237,-33.6771,-366.476,0,-312.661,-329.798,-55.9287,-368.583,-334.915,-390.838 0|0:82:66,2,14,0:66:2639:2,14,0:79,537,0:-24.1869,-37.5529,-254.334,0,-210.874,-213.16,-44.0549,-254.936,-217.375,-261.437 dDocent_Contig_3599 35 . C T 1356.39 . AB=0.75;ABP=35.5824;AC=2;AF=0.25;AN=8;AO=45;CIGAR=1X;DP=131;DPB=131;DPRA=0.84507;EPP=100.727;EPPR=189.757;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1725;QR=3247;RO=86;RPL=0;RPP=100.727;RPPR=189.757;RPR=45;RUN=1;SAF=45;SAP=100.727;SAR=0;SRF=86;SRP=189.757;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:53:10,43:10:376:43:1647:-132.537,0,-18.237 0/1:7:5,2:5:192:2:78:-5.29609,0,-15.5428 0/0:58:58,0:58:2186:0:0:0,-17.4597,-196.96 0/0:13:13,0:13:493:0:0:0,-3.91339,-44.71 dDocent_Contig_3601 41 . C T 54.9114 . AB=0.122449;ABP=63.6786;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=197;DPB=197;DPRA=0.993243;EPP=16.0391;EPPR=417.762;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=233;QR=7531;RO=191;RPL=0;RPP=16.0391;RPPR=417.762;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=191;SRP=417.762;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:57:57,0:57:2261:0:0:0,-17.1587,-203.669 0/0:66:66,0:66:2598:0:0:0,-19.868,-233.962 0/1:49:43,6:43:1691:6:233:-6.58805,0,-137.676 0/0:25:25,0:25:981:0:0:0,-7.52575,-88.5925 dDocent_Contig_3602 8 . A G 155.747 . AB=0.169231;ABP=64.7803;AC=2;AF=0.25;AN=8;AO=20;CIGAR=1X;DP=198;DPB=198;DPRA=0;EPP=46.4397;EPPR=389.532;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=750;QR=6839;RO=178;RPL=0;RPP=46.4397;RPPR=389.532;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=178;SRP=389.532;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:45:38,7:38:1434:7:265:-10.6637,0,-115.787 0/0:84:78,6:78:3019:6:226:0,-4.58496,-251.164 0/0:49:46,3:46:1783:3:117:0,-3.84009,-149.812 0/1:20:16,4:16:603:4:142:-7.10474,0,-48.5841 dDocent_Contig_3603 98 . N A 280.284 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=9;CIGAR=1X;DP=9;DPB=9;DPRA=0;EPP=22.5536;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=301;QR=0;RO=0;RPL=9;RPP=22.5536;RPPR=0;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:60:-5.69857,-0.60206,0 1/1:7:0,7:0:0:7:241:-22.0265,-2.10721,0 ./.:.:.:.:.:.:.:. dDocent_Contig_3604 15 . C A 3660.43 . AB=0.10625;ABP=218.475;AC=1;AF=0.125;AN=8;AO=17;CIGAR=1M2X;DP=160;DPB=165.333;DPRA=0;EPP=39.9253;EPPR=50.7827;GTI=0;LEN=1;MEANALT=2.75;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=678;QR=868;RO=22;RPL=0;RPP=39.9253;RPPR=50.7827;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:60:6,0,7,47:6:234:0,7,47:0,280,1856:-154.736,-156.542,-175.774,-133.477,-152.709,-150.602,-3.84185,-23.0699,0,-8.92145 0|0:44:4,1,4,35:4:159:1,4,35:41,157,1406:-114.658,-112.478,-125.267,-102.952,-112.657,-114.837,0,-9.70519,-0.182567,-2.55487 0|0:40:10,4,4,22:10:395:4,4,22:149,163,877:-69.2146,-60.0328,-91.3313,-58.7759,-79.087,-90.0758,0,-20.3167,-19.0553,-25.8841 0|0:16:2,3,2,9:2:80:3,2,9:118,78,362:-32.3509,-23.2477,-28.9348,-26.5433,-23.4286,-32.5314,-3.11354,0,-3.29658,-6.9967 dDocent_Contig_3605 209 . N G 113.747 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.29832;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=0;RO=0;RPL=3;RPP=9.52472;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:122:-11.3725,-0.90309,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_3606 28 . A G 68.767 . AB=0.0992366;ABP=185.762;AC=1;AF=0.125;AN=8;AO=13;CIGAR=1X;DP=376;DPB=376;DPRA=1.60408;EPP=31.2394;EPPR=776.054;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=514;QR=14165;RO=356;RPL=0;RPP=31.2394;RPPR=776.054;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=356;SRP=776.054;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:131:131,0:131:5232:0:0:0,-39.4349,-470.746 0/1:131:114,13:114:4544:13:514:-7.97361,0,-370.25 0/0:59:58,0:58:2293:0:0:0,-17.4597,-206.171 0/0:55:53,0:53:2096:0:0:0,-15.9546,-188.429 dDocent_Contig_3607 73 . T C 241.048 . AB=0.428571;ABP=3.94093;AC=1;AF=0.125;AN=8;AO=10;CIGAR=1X;DP=75;DPB=75;DPRA=1.5;EPP=24.725;EPPR=144.156;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=381;QR=2519;RO=65;RPL=10;RPP=24.725;RPPR=144.156;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=65;SRP=144.156;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:12,9:12:465:9:343:-24.9007,0,-35.8795 0/0:16:16,0:16:624:0:0:0,-4.81648,-56.4932 0/0:14:14,0:14:522:0:0:0,-4.21442,-47.3097 0/0:24:23,1:23:908:1:38:0,-3.42745,-78.2341 dDocent_Contig_3608 13 . T A 7897.2 . AB=0.735294;ABP=166.509;AC=4;AF=0.5;AN=8;AO=250;CIGAR=1X;DP=340;DPB=340;DPRA=0;EPP=545.878;EPPR=198.443;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=9961;QR=3615;RO=90;RPL=0;RPP=545.878;RPPR=198.443;RPR=250;RUN=1;SAF=250;SAP=545.878;SAR=0;SRF=90;SRP=198.443;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:112:47,65:47:1876:65:2606:-200.956,0,-135.333 0/1:107:11,96:11:443:96:3809:-310.609,0,-8.01402 0/1:58:9,49:9:367:49:1966:-159.673,0,-15.9355 0/1:63:23,40:23:929:40:1580:-123.473,0,-64.9482 dDocent_Contig_3609 13 . C A 194.263 . AB=0.204082;ABP=40.2799;AC=1;AF=0.125;AN=8;AO=13;CIGAR=1X;DP=117;DPB=117;DPRA=3.17857;EPP=31.2394;EPPR=228.843;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=510;QR=4200;RO=104;RPL=0;RPP=31.2394;RPPR=228.843;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=104;SRP=228.843;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:20:20,0:20:810:0:0:0,-6.0206,-73.2151 0/0:40:37,3:37:1498:3:122:0,-0.668707,-123.687 0/1:49:39,10:39:1575:10:388:-20.5222,0,-127.232 0/0:8:8,0:8:317:0:0:0,-2.40824,-28.8929 dDocent_Contig_3610 17 . T C 4716.89 . AB=0.401914;ABP=37.9409;AC=4;AF=0.5;AN=8;AO=168;CIGAR=1X1M;DP=418;DPB=418;DPRA=0;EPP=367.818;EPPR=476.391;GTI=0;LEN=1;MEANALT=1.75;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6586;QR=8625;RO=218;RPL=0;RPP=367.818;RPPR=476.391;RPR=168;RUN=1;SAF=168;SAP=367.818;SAR=0;SRF=218;SRP=476.391;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:135:95,0,40:95:3768:0,40:0,1514:-95.8682,-124.466,-434.633,0,-310.551,-298.509 0|1:126:44,22,60:44:1726:22,60:860,2396:-184.086,-126.64,-261.938,0,-71.2313,-123.862 0|1:104:51,8,43:51:2015:8,43:309,1685:-123.191,-113.17,-276.568,0,-140.435,-152.864 0|1:53:28,0,25:28:1116:0,25:0,991:-73.533,-81.9618,-173.862,0,-92.2975,-84.7718 dDocent_Contig_3611 1 . N G 687.396 . AB=0.6;ABP=3.87889;AC=6;AF=1;AN=6;AO=16;CIGAR=1X4M;DP=20;DPB=20;DPRA=0;EPP=37.7539;EPPR=0;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=0;NS=3;NUMALT=2;ODDS=0;PAIRED=0.875;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=635;QR=0;RO=0;RPL=0;RPP=37.7539;RPPR=0;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:3:0,0,3:0:0:0,3:0,121:-11.28,-11.28,-11.28,-0.90309,-0.90309,0 1|1:10:0,4,6:0:0:4,6:160,238:-33.1696,-19.9879,-18.7838,-13.5799,0,-11.7737 1|1:7:0,0,7:0:0:0,7:0,276:-25.2093,-25.2093,-25.2093,-2.10721,-2.10721,0 .:.:.:.:.:.:.:. dDocent_Contig_3612 19 . T C 1426.45 . AB=0.374101;ABP=22.1474;AC=4;AF=0.5;AN=8;AO=52;CIGAR=1X;DP=139;DPB=139;DPRA=0;EPP=115.927;EPPR=191.928;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=0.988506;PAO=0;PQA=0;PQR=0;PRO=0;QA=2090;QR=3469;RO=87;RPL=0;RPP=115.927;RPPR=191.928;RPR=52;RUN=1;SAF=52;SAP=115.927;SAR=0;SRF=87;SRP=191.928;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:41:28,13:28:1119:13:517:-34.533,0,-88.6508 0/1:66:52,14:52:2066:14:567:-31.5043,0,-166.25 0/1:21:4,17:4:163:17:693:-56.3764,0,-8.7368 0/1:11:3,8:3:121:8:313:-25.2211,0,-7.96887 dDocent_Contig_3613 40 . T G 33.9637 . AB=0.102941;ABP=96.1281;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=276;DPB=276;DPRA=0.703704;EPP=20.3821;EPPR=576.311;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.6418;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.977612;PAO=0;PQA=0;PQR=0;PRO=0;QA=310;QR=10654;RO=268;RPL=0;RPP=20.3821;RPPR=584.965;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=267;SRP=576.311;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:68:61,7:61:2432:7:270:-4.19207,0,-198.334 0/0:95:95,0:95:3769:0:0:0,-28.5978,-338.441 0/0:67:67,0:67:2661:0:0:0,-20.169,-239.064 0/0:46:45,1:45:1792:1:40:0,-9.8517,-157.493 dDocent_Contig_3615 15 . G A 8559.34 . AB=0.46395;ABP=10.2122;AC=4;AF=0.5;AN=8;AO=296;CIGAR=1X2M1X;DP=638;DPB=638;DPRA=0;EPP=645.766;EPPR=743.482;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=11696;QR=13326;RO=341;RPL=0;RPP=645.766;RPPR=743.482;RPR=296;RUN=1;SAF=296;SAP=645.766;SAR=0;SRF=341;SRP=743.482;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:271:136,134:136:5320:134:5291:-394.396,0,-397.035 0|1:174:87,87:87:3391:87:3483:-261.139,0,-252.902 0|1:122:72,50:72:2830:50:1944:-138.447,0,-218.12 0|1:71:46,25:46:1785:25:978:-66.9426,0,-139.513 dDocent_Contig_3616 123 . A G 6207.97 . AB=0.777397;ABP=198.175;AC=5;AF=0.625;AN=8;AO=227;CIGAR=1X4M;DP=292;DPB=292;DPRA=0;EPP=495.935;EPPR=96.3836;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7551;QR=1420;RO=43;RPL=0;RPP=495.935;RPPR=96.3836;RPR=227;RUN=1;SAF=0;SAP=495.935;SAR=227;SRF=0;SRP=96.3836;SRR=43;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:80:24,0,56:24:778:0,56:0,1925:-149.449,-156.674,-219.442,0,-63.0983,-46.2406 1|1:124:4,14,102:4:137:14,102:458,3393:-299.304,-263.515,-270.423,-25.9093,0,-6.33533 0|1:46:11,0,33:11:370:0,33:0,1022:-78.8269,-82.1383,-112.124,0,-30.1098,-20.1758 0|1:42:4,2,36:4:135:2,36:69,1211:-96.9031,-92.501,-102.841,0,-5.32873,-0.0998702 dDocent_Contig_3617 19 . G C 215.847 . AB=0.129496;ABP=168.745;AC=1;AF=0.125;AN=8;AO=27;CIGAR=1X;DP=421;DPB=421;DPRA=0.669048;EPP=61.6401;EPPR=858.57;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1072;QR=15750;RO=394;RPL=0;RPP=61.6401;RPPR=858.57;RPR=27;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=394;SRP=858.57;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:139:121,18:121:4823:18:710:-22.3806,0,-392.126 0/0:140:140,0:140:5582:0:0:0,-42.1442,-502.203 0/0:89:83,6:83:3347:6:241:0,-4.72499,-279.206 0/0:53:50,3:50:1998:3:121:0,-4.6746,-168.732 dDocent_Contig_3618 43 . G A 1595.56 . AB=0.364198;ABP=28.9607;AC=4;AF=0.5;AN=8;AO=59;CIGAR=1X;DP=162;DPB=162;DPRA=0;EPP=131.127;EPPR=226.672;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2355;QR=4121;RO=103;RPL=0;RPP=131.127;RPPR=226.672;RPR=59;RUN=1;SAF=59;SAP=131.127;SAR=0;SRF=103;SRP=226.672;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:61:38,23:38:1507:23:919:-64.6535,0,-117.506 0/1:43:26,17:26:1045:17:673:-47.9569,0,-81.3983 0/1:46:33,13:33:1327:13:519:-33.2093,0,-105.843 0/1:12:6,6:6:242:6:244:-18.7265,0,-18.545 dDocent_Contig_3619 107 . N T 94.6813 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=40;MQMR=0;NS=1;NUMALT=1;ODDS=5.29832;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=105;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:105:-9.46597,-0.90309,0 ./.:.:.:.:.:.:.:. dDocent_Contig_3620 19 . C T 1170.81 . AB=0.171958;ABP=356.328;AC=3;AF=0.375;AN=8;AO=67;CIGAR=1X;DP=519;DPB=519;DPRA=0;EPP=148.499;EPPR=982.344;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2673;QR=17964;RO=451;RPL=0;RPP=148.499;RPPR=982.344;RPR=67;RUN=1;SAF=67;SAP=148.499;SAR=0;SRF=451;SRP=982.344;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:182:155,26:155:6183:26:1037:-38.7295,0,-501.326 0/1:141:108,33:108:4281:33:1319:-76.5242,0,-342.811 0/0:141:139,2:139:5526:2:77:0,-35.137,-489.856 0/1:55:49,6:49:1974:6:240:-5.4188,0,-161.297 dDocent_Contig_3621 21 . G T 3793.31 . AB=0.616352;ABP=21.7068;AC=5;AF=0.625;AN=8;AO=121;CIGAR=1X;DP=183;DPB=183;DPRA=0;EPP=265.758;EPPR=137.642;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.935484;PAO=0;PQA=0;PQR=0;PRO=0;QA=4819;QR=2473;RO=62;RPL=0;RPP=265.758;RPPR=137.642;RPR=121;RUN=1;SAF=121;SAP=265.758;SAR=0;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:58:28,30:28:1123:30:1217:-92.3412,0,-83.893 0/1:34:14,20:14:551:20:809:-62.8906,0,-39.6917 0/1:67:19,48:19:759:48:1913:-152.198,0,-48.4626 1/1:24:1,23:1:40:23:880:-75.4931,-3.22904,0 dDocent_Contig_3622 36 . A T 4543.68 . AB=0.492063;ABP=3.18264;AC=4;AF=0.5;AN=8;AO=155;CIGAR=1X;DP=315;DPB=315;DPRA=0;EPP=339.589;EPPR=350.446;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6147;QR=6405;RO=160;RPL=0;RPP=339.589;RPPR=350.446;RPR=155;RUN=1;SAF=155;SAP=339.589;SAR=0;SRF=160;SRP=350.446;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:78:65,13:65:2602:13:524:-24.0266,0,-210.829 0/1:120:47,73:47:1876:73:2866:-221.913,0,-132.922 0/1:66:28,38:28:1129:38:1511:-116.359,0,-82.0228 0/1:51:20,31:20:798:31:1246:-97.0594,0,-56.7845 dDocent_Contig_3623 8 . C A 3113.59 . AB=0.429043;ABP=16.2613;AC=4;AF=0.5;AN=8;AO=130;CIGAR=1X;DP=303;DPB=303;DPRA=0;EPP=285.302;EPPR=376.504;GTI=0;LEN=1;MEANALT=1.25;MQM=37.6308;MQMR=59.6744;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.674419;PAO=0;PQA=0;PQR=0;PRO=0;QA=4954;QR=6637;RO=172;RPL=0;RPP=285.302;RPPR=376.504;RPR=130;RUN=1;SAF=130;SAP=285.302;SAR=0;SRF=172;SRP=376.504;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:109:68,41:68:2643:41:1556:-94.723,0,-205.241 0/1:106:70,36:70:2693:36:1382:-82.276,0,-210.432 0/1:56:27,29:27:1039:29:1107:-74.8599,0,-76.9589 0/1:32:7,24:7:262:24:909:-64.4893,0,-14.2166 dDocent_Contig_3624 34 . C A 1140 . AB=0.376068;ABP=18.6189;AC=4;AF=0.5;AN=8;AO=44;CIGAR=1X;DP=117;DPB=117;DPRA=0;EPP=98.5551;EPPR=161.528;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.159091;PAIREDR=0.753425;PAO=0;PQA=0;PQR=0;PRO=0;QA=1694;QR=2927;RO=73;RPL=0;RPP=98.5551;RPPR=161.528;RPR=44;RUN=1;SAF=44;SAP=98.5551;SAR=0;SRF=73;SRP=161.528;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:61:42,19:42:1672:19:721:-46.8469,0,-132.345 0/1:27:10,17:10:408:17:664:-51.9639,0,-28.9528 0/1:20:13,7:13:524:7:271:-18.7312,0,-41.487 0/1:9:8,1:8:323:1:38:-1.088,0,-26.7297 dDocent_Contig_3625 14 . C T 2965.89 . AB=0.232394;ABP=356.318;AC=4;AF=0.5;AN=8;AO=132;CIGAR=1X;DP=568;DPB=568;DPRA=0;EPP=289.645;EPPR=949.772;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5239;QR=17414;RO=436;RPL=0;RPP=289.645;RPPR=949.772;RPR=132;RUN=1;SAF=132;SAP=289.645;SAR=0;SRF=436;SRP=949.772;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:225:157,68:157:6258:68:2691:-174.585,0,-495.227 0/1:187:166,21:166:6629:21:819:-17.7252,0,-540.013 0/1:112:87,25:87:3476:25:999:-56.4897,0,-279.157 0/1:44:26,18:26:1051:18:730:-52.7786,0,-81.6339 dDocent_Contig_3626 160 . C A 4440.92 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=313;CIGAR=1X;DP=355;DPB=355;DPRA=0;EPP=674.023;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.99361;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5237;QR=313;RO=39;RPL=312;RPP=674.023;RPPR=87.6977;RPR=1;RUN=1;SAF=0;SAP=682.681;SAR=313;SRF=0;SRP=87.6977;SRR=39;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:122:13,107:13:100:107:1619:-136.778,-27.1176,0 1/1:133:12,120:12:97:120:2061:-176.84,-30.996,0 1/1:60:9,51:9:63:51:908:-76.155,-12.3218,0 1/1:40:5,35:5:53:35:649:-53.7171,-7.16524,0 dDocent_Contig_3627 93 . T A 415.48 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=13;CIGAR=2D3M2X;DP=13;DPB=9.42857;DPRA=0;EPP=31.2394;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=1;PQA=0;PQR=0;PRO=0;QA=445;QR=0;RO=0;RPL=13;RPP=31.2394;RPPR=0;RPR=0;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:8:0,8:0:0:8:276:-25.176,-2.40824,0 1|1:2:0,2:0:0:2:69:-6.4377,-0.60206,0 1|1:3:0,3:0:0:3:100:-9.33066,-0.90309,0 .:.:.:.:.:.:.:. dDocent_Contig_3628 8 . A T 4352.93 . AB=0.0980392;ABP=217.731;AC=1;AF=0.125;AN=8;AO=15;CIGAR=1M1D1M1X2M1X3M;DP=224;DPB=204.7;DPRA=0;EPP=35.5824;EPPR=70.3259;GTI=0;LEN=1;MEANALT=4.66667;MQM=60;MQMR=60;NS=4;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=572;QR=1199;RO=31;RPL=0;RPP=35.5824;RPPR=70.3259;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:71:4,0,13,7,47:4:154:0,13,7,47:0,499,270,1800:-174.832,-176.036,-188.681,-135.076,-147.72,-143.807,-153.863,-166.508,-125.547,-164.401,-28.3148,-40.9596,0,-18.7862,-26.8112 1|0:68:2,10,4,8,41:2:78:10,4,8,41:386,153,310,1562:-152.824,-121.724,-125.126,-140.871,-115.581,-146.079,-127.957,-102.667,-121.814,-131.961,-25.2932,0,-19.1499,-6.23371,-19.3637 0|0:48:11,4,9,0,24:11:429:4,9,0,24:155,346,0,866:-67.3377,-57.9127,-91.9776,-42.2385,-64.773,-74.7996,-70.6491,-93.1817,-77.5089,-105.917,0,-22.5313,-6.86143,-35.2654,-28.0407 0|0:37:14,1,4,2,16:14:538:1,4,2,16:31,156,77,604:-45.2886,-47.0176,-90.8826,-36.6769,-78.3591,-79.6413,-43.1799,-84.8611,-74.5227,-86.7454,0,-41.6844,-31.3439,-37.8466,-39.3528 dDocent_Contig_3629 46 . T A 32.9616 . AB=0.0963855;ABP=120.453;AC=1;AF=0.125;AN=8;AO=17;CIGAR=1X;DP=257;DPB=257;DPRA=0;EPP=39.9253;EPPR=524.164;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.979167;PAO=0;PQA=0;PQR=0;PRO=0;QA=673;QR=9562;RO=240;RPL=0;RPP=39.9253;RPPR=524.164;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=240;SRP=524.164;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:83:75,8:75:2981:8:319:-4.09158,0,-243.39 0/0:66:64,2:64:2551:2:71:0,-13.1286,-222.983 0/0:67:63,4:63:2519:4:164:0,-5.01911,-211.691 0/0:41:38,3:38:1511:3:119:0,-1.24722,-125.136 dDocent_Contig_3630 7 . C T 1814.62 . AB=0.0482759;ABP=774.003;AC=0;AF=0;AN=8;AO=21;CIGAR=2M1X2M;DP=435;DPB=417.2;DPRA=0;EPP=48.6112;EPPR=652.281;GTI=0;LEN=1;MEANALT=3.25;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=0.989967;PAO=0;PQA=0;PQR=0;PRO=0;QA=815;QR=11454;RO=299;RPL=0;RPP=48.6112;RPPR=652.281;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=299;SRP=652.281;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:146:77,43,8,17:77:2950:43,8,17:1618,311,661:-109.382,0,-229.164,-107.002,-216.55,-346.708,-78.2371,-187.786,-294.794,-315.235 0|0:122:95,21,6,0:95:3625:21,6,0:797,232,0:-36.7508,0,-291.078,-46.2905,-278.343,-341.89,-65.3486,-297.399,-343.696,-362.753 0|0:115:86,19,5,4:86:3302:19,5,4:727,194,156:-33.7851,0,-265.358,-43.7309,-255.137,-313.291,-46.8477,-258.254,-301.973,-316.709 0|0:52:41,6,2,3:41:1577:6,2,3:230,78,115:-6.534,0,-127.667,-12.4633,-123.061,-141.336,-9.43791,-120.034,-132.5,-138.009 dDocent_Contig_3632 92 . C T 11221 . AB=0.631356;ABP=38.3795;AC=6;AF=0.75;AN=8;AO=380;CIGAR=1X;DP=467;DPB=467;DPRA=0;EPP=828.17;EPPR=189.757;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=13272;QR=2972;RO=86;RPL=380;RPP=828.17;RPPR=189.757;RPR=0;RUN=1;SAF=380;SAP=828.17;SAR=0;SRF=86;SRP=189.757;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:154:0,154:0:0:154:5349:-481.555,-46.3586,0 0/1:143:74,68:74:2557:68:2384:-171.734,0,-187.304 1/1:77:0,77:0:0:77:2719:-244.957,-23.1793,0 0/1:93:12,81:12:415:81:2820:-226.045,0,-9.68623 dDocent_Contig_3633 15 . C T 366.166 . AB=0.236111;ABP=46.5604;AC=2;AF=0.25;AN=8;AO=21;CIGAR=1X;DP=129;DPB=129;DPRA=0;EPP=48.6112;EPPR=237.529;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=823;QR=4297;RO=108;RPL=0;RPP=48.6112;RPPR=237.529;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=108;SRP=237.529;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:14,11:14:563:11:424:-30.9803,0,-43.4872 0/1:47:41,6:41:1603:6:240:-7.82613,0,-130.348 0/0:37:34,3:34:1370:3:119:0,-0.0430954,-112.462 0/0:20:19,1:19:761:1:40:0,-2.02492,-64.8174 dDocent_Contig_3634 36 . C A 42.7455 . AB=0.25;ABP=7.35324;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X;DP=131;DPB=131;DPRA=0.195122;EPP=7.35324;EPPR=280.959;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.929688;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=5143;RO=128;RPL=0;RPP=7.35324;RPPR=280.959;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=128;SRP=280.959;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:44:44,0:44:1763:0:0:0,-13.2453,-158.881 0/0:65:65,0:65:2621:0:0:0,-19.5669,-236.012 0/0:14:13,0:13:518:0:0:0,-3.91339,-46.5651 0/1:8:6,2:6:241:2:82:-5.37144,0,-19.6581 dDocent_Contig_3635 143 . C A 5160.21 . 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T A 857.118 . AB=0.04;ABP=94.907;AC=0;AF=0;AN=8;AO=2;CIGAR=3M2I1X4M1X5M2X1M1X1M1I2M;DP=174;DPB=175.143;DPRA=0;EPP=7.35324;EPPR=135.47;GTI=0;LEN=1;MEANALT=12;MQM=45;MQMR=60;NS=4;NUMALT=6;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0.285714;PQA=0;PQR=0;PRO=0.285714;QA=77;QR=2402;RO=61;RPL=0;RPP=7.35324;RPPR=135.47;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=61;SRP=135.47;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:50:13,5,3,2,0,10,2:13:506:5,3,2,0,10,2:194,114,80,0,364,77:-25.2482,-13.6268,-53.712,-19.8715,-45.9275,-60.5582,-22.5697,-48.6258,-54.8701,-63.5577,-29.1615,-55.2171,-61.4613,-64.1598,-70.7509,0,-26.0557,-32.2998,-34.9978,-41.589,-38.5787,-22.992,-49.0478,-55.292,-57.9904,-64.5816,-35.4199,-63.9796 0|0:59:23,7,0,0,1,13,0:23:906:7,0,0,1,13,0:267,0,0,37,474,0:-30.9395,-16.4732,-88.925,-37.8631,-91.0322,-112.417,-37.8631,-91.0322,-112.417,-112.417,-34.8488,-88.0184,-109.403,-109.403,-109.102,0,-53.1768,-74.5616,-74.5616,-71.5479,-70.6482,-37.8631,-91.0322,-112.417,-112.417,-109.403,-74.5616,-112.417 0|0:48:22,1,0,0,0,10,0:22:871:1,0,0,0,10,0:39,0,0,0,343,0:-20.8101,-24.3099,-95.7224,-27.4328,-96.0235,-99.1451,-27.4328,-96.0235,-99.1451,-99.1451,-27.4328,-96.0235,-99.1451,-99.1451,-99.1451,0,-68.5951,-71.7166,-71.7166,-71.7166,-68.7063,-27.4328,-96.0235,-99.1451,-99.1451,-99.1451,-71.7166,-99.1451 0|0:17:3,1,0,0,2,5,0:3:119:1,0,0,2,5,0:38,0,0,79,182,0:-13.7037,-11.5576,-21.0606,-14.6068,-21.3617,-24.4102,-14.6068,-21.3617,-24.4102,-24.4102,-8.1464,-14.9031,-17.952,-17.952,-17.3499,0,-6.75827,-9.80691,-9.80691,-3.34708,-8.30176,-14.6068,-21.3617,-24.4102,-24.4102,-17.952,-9.80691,-24.4102 dDocent_Contig_3639 173 . T A 55.4044 . AB=0.135135;ABP=45.7942;AC=2;AF=0.25;AN=8;AO=8;CIGAR=1X;DP=156;DPB=156;DPRA=0.647799;EPP=20.3821;EPPR=324.388;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=323;QR=5942;RO=148;RPL=8;RPP=20.3821;RPPR=324.388;RPR=0;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=324.388;SRR=148;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:66:63,3:63:2524:3:122:0,-8.49549,-215.917 0/0:53:53,0:53:2134:0:0:0,-15.9546,-192.232 0/1:24:21,3:21:844:3:121:-4.05527,0,-69.0488 0/1:13:11,2:11:440:2:80:-3.67819,0,-36.0405 dDocent_Contig_3640 21 . A G 510.718 . AB=0.234694;ABP=62.9252;AC=2;AF=0.25;AN=8;AO=26;CIGAR=1X;DP=147;DPB=147;DPRA=0;EPP=59.4686;EPPR=263.587;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1032;QR=4668;RO=120;RPL=0;RPP=59.4686;RPPR=263.587;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=120;SRP=263.587;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:62:47,14:47:1841:14:547:-31.0681,0,-147.42 0/0:18:17,1:17:664:1:41:0,-1.32397,-55.9933 0/0:31:29,2:29:1130:2:81:0,-1.6462,-94.2987 0/1:36:27,9:27:1033:9:363:-22.1972,0,-82.4254 dDocent_Contig_3641 1 . N G 74.0762 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=4.60517;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=78;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:78:-7.4033,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_3642 30 . C T 43.7801 . AB=0.142857;ABP=26.2761;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X3M1I3M1X4M1X;DP=113;DPB=114;DPRA=0.552632;EPP=9.52472;EPPR=220.158;GTI=0;LEN=1;MEANALT=2;MQM=40;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=116;QR=3932;RO=100;RPL=0;RPP=9.52472;RPPR=220.158;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=100;SRP=220.158;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:46:43,0,3:43:1698:0,3:0,116:0,-12.9443,-152.745,-5.14234,-145.26,-144.356 0|0:30:28,0,2:28:1098:0,2:0,80:0,-8.42884,-98.7457,-2.00282,-92.691,-92.0889 0|0:16:14,0,2:14:553:0,2:0,79:-2.16138,-6.3758,-51.9051,0,-45.9,-45.2979 0|1:21:15,3,3:15:583:3,3:116,122:-4.38722,0,-47.0636,-1.3398,-40.3922,-48.3635 dDocent_Contig_3643 14 . T A 6312.24 . AB=0.794393;ABP=164.105;AC=5;AF=0.625;AN=8;AO=198;CIGAR=2X;DP=244;DPB=244;DPRA=0;EPP=432.962;EPPR=100.727;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7848;QR=1784;RO=45;RPL=0;RPP=432.962;RPPR=100.727;RPR=198;RUN=1;SAF=198;SAP=432.962;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:59:17,42:17:679:42:1669:-132.682,0,-43.6791 0|1:68:12,55:12:478:55:2203:-177.863,0,-22.7936 0|1:87:14,73:14:545:73:2884:-233.48,0,-23.2 1|1:30:2,28:2:82:28:1092:-90.7918,-1.25122,0 dDocent_Contig_3644 28 . G A 7240.42 . AB=0.819742;ABP=209.915;AC=5;AF=0.625;AN=8;AO=227;CIGAR=1X;DP=272;DPB=272;DPRA=0;EPP=495.935;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1.25;MQM=59.9559;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.991189;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=8941;QR=1729;RO=44;RPL=0;RPP=495.935;RPPR=98.5551;RPR=227;RUN=1;SAF=227;SAP=495.935;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:61:6,55:6:239:55:2103:-171.072,0,-3.52109 0/1:110:20,90:20:781:90:3584:-289.484,0,-37.4951 0/1:62:16,46:16:628:46:1824:-145.711,0,-38.187 1/1:39:2,36:2:81:36:1430:-121.366,-3.95491,0 dDocent_Contig_3645 17 . G A 169.735 . AB=0.178571;ABP=53.2644;AC=2;AF=0.25;AN=8;AO=10;CIGAR=1X;DP=103;DPB=103;DPRA=1.19149;EPP=24.725;EPPR=204.957;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=392;QR=3703;RO=93;RPL=0;RPP=24.725;RPPR=204.957;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=93;SRP=204.957;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:30:30,0:30:1190:0:0:0,-9.0309,-107.374 0/1:22:17,5:17:681:5:192:-11.023,0,-54.9959 0/1:34:29,5:29:1155:5:200:-8.14431,0,-93.9952 0/0:17:17,0:17:677:0:0:0,-5.11751,-61.2597 dDocent_Contig_3646 17 . A G 7615.28 . AB=0.769231;ABP=68.4885;AC=6;AF=0.75;AN=8;AO=238;CIGAR=1X2M1X2M1X;DP=274;DPB=274;DPRA=0;EPP=519.821;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1.75;MQM=59.6849;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=9236;QR=1266;RO=33;RPL=0;RPP=519.821;RPPR=74.6689;RPR=238;RUN=1;SAF=238;SAP=519.821;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:94:6,87:6:228:87:3403:-285.486,-7.49193,0 1|1:76:4,71:4:161:71:2748:-231.379,-8.10183,0 0|1:65:8,56:8:313:56:2148:-173.955,0,-8.94897 0|1:39:15,24:15:564:24:937:-72.9024,0,-39.3469 dDocent_Contig_3647 22 . T A 5542.62 . AB=0.654412;ABP=59.3408;AC=4;AF=0.5;AN=8;AO=178;CIGAR=1X;DP=272;DPB=272;DPRA=0;EPP=389.532;EPPR=204.957;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7112;QR=3740;RO=93;RPL=0;RPP=389.532;RPPR=204.957;RPR=178;RUN=1;SAF=178;SAP=389.532;SAR=0;SRF=93;SRP=204.957;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:78:32,46:32:1286:46:1868:-144.835,0,-92.5188 0/1:83:37,46:37:1492:46:1806:-137.77,0,-109.537 0/1:76:16,59:16:639:59:2354:-189.336,0,-35.1484 0/1:35:8,27:8:323:27:1084:-87.3111,0,-18.9025 dDocent_Contig_3649 15 . A G 2767.51 . AB=0.330159;ABP=81.9347;AC=4;AF=0.5;AN=8;AO=104;CIGAR=1X;DP=315;DPB=315;DPRA=0;EPP=228.843;EPPR=461.191;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4171;QR=8416;RO=211;RPL=0;RPP=228.843;RPPR=461.191;RPR=104;RUN=1;SAF=104;SAP=228.843;SAR=0;SRF=211;SRP=461.191;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:92:58,34:58:2317:34:1363:-95.2363,0,-180.992 0/1:111:70,41:70:2794:41:1649:-115.225,0,-218.148 0/1:73:52,21:52:2059:21:835:-53.4903,0,-163.52 0/1:39:31,8:31:1246:8:324:-17.7887,0,-100.665 dDocent_Contig_3650 107 . N A 295.404 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=10;CIGAR=1X;DP=10;DPB=10;DPRA=0;EPP=24.725;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=40;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=314;QR=0;RO=0;RPL=0;RPP=24.725;RPPR=0;RPR=10;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:5:0,5:0:0:5:163:-14.658,-1.50515,0 1/1:1:0,1:0:0:1:31:-3.04854,-0.30103,0 1/1:1:0,1:0:0:1:30:-2.95865,-0.30103,0 1/1:3:0,3:0:0:3:90:-8.26791,-0.90309,0 dDocent_Contig_3651 108 . T G 53.0028 . AB=0.112179;ABP=410.607;AC=2;AF=0.25;AN=8;AO=48;CIGAR=1X;DP=627;DPB=627;DPRA=0;EPP=107.241;EPPR=1260.29;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.9724;NS=4;NUMALT=1;ODDS=0;PAIRED=0.729167;PAIREDR=0.411054;PAO=0;PQA=0;PQR=0;PRO=0;QA=1537;QR=18360;RO=579;RPL=0;RPP=107.241;RPPR=1260.29;RPR=48;RUN=1;SAF=0;SAP=107.241;SAR=48;SRF=0;SRP=1260.29;SRR=579;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:160:155,5:155:4918:5:158:0,-33.6326,-428.277 0/0:155:147,8:147:4586:8:260:0,-22.9418,-389.211 0/1:176:157,19:157:4948:19:597:-1.04847,0,-392.527 0/1:136:120,16:120:3908:16:522:-6.35116,0,-311.005 dDocent_Contig_3652 7 . C A 6746.8 . 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T A 4861.98 . AB=0.57554;ABP=16.789;AC=4;AF=0.5;AN=8;AO=160;CIGAR=1X1M1X;DP=278;DPB=278;DPRA=0;EPP=350.446;EPPR=259.244;GTI=0;LEN=1;MEANALT=1;MQM=59.675;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.99375;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6385;QR=4671;RO=118;RPL=0;RPP=350.446;RPPR=259.244;RPR=160;RUN=1;SAF=160;SAP=350.446;SAR=0;SRF=118;SRP=259.244;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:91:37,54:37:1441:54:2128:-163.608,0,-102.555 0|1:100:39,61:39:1562:61:2449:-190.449,0,-110.715 0|1:39:14,25:14:556:25:1001:-78.632,0,-38.6401 0|1:48:28,20:28:1112:20:807:-58.4978,0,-85.9203 dDocent_Contig_3654 98 . N C 1277.29 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=41;CIGAR=1X;DP=41;DPB=41;DPRA=0;EPP=92.0407;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=0.97561;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1398;QR=0;RO=0;RPL=41;RPP=92.0407;RPPR=0;RPR=0;RUN=1;SAF=41;SAP=92.0407;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1:0,1:0:0:1:35:-3.49863,-0.30103,0 1/1:19:0,19:0:0:19:661:-59.8153,-5.71957,0 1/1:6:0,6:0:0:6:186:-17.044,-1.80618,0 1/1:15:0,15:0:0:15:516:-46.7672,-4.51545,0 dDocent_Contig_3655 134 . G T 861.963 . AB=0.18612;ABP=274.28;AC=4;AF=0.5;AN=8;AO=59;CIGAR=1X;DP=317;DPB=317;DPRA=0;EPP=131.127;EPPR=563.25;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2059;QR=9121;RO=258;RPL=0;RPP=131.127;RPPR=563.25;RPR=59;RUN=1;SAF=0;SAP=131.127;SAR=59;SRF=0;SRP=563.25;SRR=258;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:91:74,17:74:2610:17:583:-25.3986,0,-207.742 0/1:85:74,11:74:2658:11:365:-7.58047,0,-213.873 0/1:91:70,21:70:2463:21:762:-41.513,0,-194.523 0/1:50:40,10:40:1390:10:349:-16.6939,0,-110.339 dDocent_Contig_3657 15 . A T 114.397 . AB=0.162791;ABP=45.4803;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=79;DPB=79;DPRA=3.58333;EPP=18.2106;EPPR=159.356;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=279;QR=2901;RO=72;RPL=0;RPP=18.2106;RPPR=159.356;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=72;SRP=159.356;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:17:17,0:17:693:0:0:0,-5.11751,-62.698 0/1:43:36,7:36:1440:7:279:-12.5366,0,-116.905 0/0:8:8,0:8:322:0:0:0,-2.40824,-29.3481 0/0:11:11,0:11:446:0:0:0,-3.31133,-40.4956 dDocent_Contig_3659 9 . T G 8544.08 . AB=0.658314;ABP=98.5798;AC=4;AF=0.5;AN=8;AO=289;CIGAR=1X;DP=439;DPB=439;DPRA=0;EPP=630.566;EPPR=328.731;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.972318;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=11009;QR=5749;RO=150;RPL=0;RPP=630.566;RPPR=328.731;RPR=289;RUN=1;SAF=289;SAP=630.566;SAR=0;SRF=150;SRP=328.731;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:121:46,75:46:1781:75:2864:-221.515,0,-124.117 0/1:86:26,60:26:998:60:2270:-178.624,0,-64.2419 0/1:107:30,77:30:1165:77:2947:-233.193,0,-72.9379 0/1:125:48,77:48:1805:77:2928:-226.066,0,-125.074 dDocent_Contig_3660 62 . T C 249.509 . AB=0.23913;ABP=30.2009;AC=2;AF=0.25;AN=8;AO=11;CIGAR=1X;DP=105;DPB=105;DPRA=0.779661;EPP=26.8965;EPPR=207.129;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=447;QR=3702;RO=94;RPL=11;RPP=26.8965;RPPR=207.129;RPR=0;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=94;SRP=207.129;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:24:24,0:24:907:0:0:0,-7.22472,-81.9211 0/1:30:22,8:22:871:8:325:-20.5887,0,-69.6689 0/0:35:35,0:35:1400:0:0:0,-10.536,-126.254 0/1:16:13,3:13:524:3:122:-6.55601,0,-42.6899 dDocent_Contig_3662 97 . A G 200.09 . 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AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.29832;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=93;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:93:-8.67801,-0.90309,0 dDocent_Contig_3665 15 . G T 442.693 . 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G A 278.381 . AB=0.189873;ABP=69.0066;AC=2;AF=0.25;AN=8;AO=16;CIGAR=1X;DP=124;DPB=124;DPRA=1.84211;EPP=37.7539;EPPR=237.529;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.990741;PAO=0;PQA=0;PQR=0;PRO=0;QA=630;QR=4227;RO=108;RPL=0;RPP=37.7539;RPPR=237.529;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=108;SRP=237.529;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:56:45,11:45:1742:11:442:-23.2772,0,-140.138 0/0:26:25,1:25:977:1:40:0,-3.8311,-84.2267 0/1:23:19,4:19:763:4:148:-6.75466,0,-62.0688 0/0:19:19,0:19:745:0:0:0,-5.71957,-67.3738 dDocent_Contig_3668 9 . G A 4339.16 . 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AB=0.287234;ABP=39.9715;AC=2;AF=0.25;AN=8;AO=32;CIGAR=1X;DP=228;DPB=228;DPRA=2.04167;EPP=72.4974;EPPR=428.619;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1290;QR=7890;RO=196;RPL=0;RPP=72.4974;RPPR=428.619;RPR=32;RUN=1;SAF=32;SAP=72.4974;SAR=0;SRF=196;SRP=428.619;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:102:97,5:97:3919:5:196:0,-12.6922,-334.677 0/1:72:47,25:47:1873:25:1012:-69.6968,0,-147.103 0/1:22:20,2:20:809:2:82:-1.15702,0,-66.5027 0/0:32:32,0:32:1289:0:0:0,-9.63296,-116.273 dDocent_Contig_3670 61 . G A 6225.12 . AB=0.811321;ABP=136.863;AC=6;AF=0.75;AN=8;AO=189;CIGAR=1X;DP=219;DPB=219;DPRA=0;EPP=413.419;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7464;QR=1166;RO=30;RPL=189;RPP=413.419;RPPR=68.1545;RPR=0;RUN=1;SAF=189;SAP=413.419;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:47:0,47:0:0:47:1885:-169.857,-14.1484,0 0/1:125:25,100:25:965:100:3939:-316.876,0,-49.5141 0/1:34:5,29:5:201:29:1153:-93.8141,0,-8.23566 1/1:13:0,13:0:0:13:487:-44.1582,-3.91339,0 dDocent_Contig_3671 22 . A G 263.108 . AB=0.0241546;ABP=410.125;AC=0;AF=0;AN=8;AO=23;CIGAR=2M1X8M;DP=642;DPB=636.636;DPRA=1.27569;EPP=52.9542;EPPR=1245.09;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=892;QR=22336;RO=572;RPL=0;RPP=52.9542;RPPR=1245.09;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=572;SRP=1245.09;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:163:157,0,6:157:6101:0,6:0,241:0,-47.2617,-548.557,-27.0018,-528.698,-526.892 0|0:207:163,25,5:163:6386:25,5:934,197:-27.4061,0,-517.627,-60.2643,-508.947,-583.897 0|0:139:125,0,12:125:4887:0,12:0,454:0,-37.6287,-439.416,-0.411522,-402.203,-398.59 0|0:133:127,3,0:127:4962:3,0:116,0:0,-28.7077,-435.718,-38.2308,-436.622,-446.15 dDocent_Contig_3672 89 . T C 1928.67 . AB=0.542254;ABP=5.21236;AC=4;AF=0.5;AN=8;AO=77;CIGAR=1X;DP=142;DPB=142;DPRA=0;EPP=170.214;EPPR=144.156;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.896104;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2659;QR=2230;RO=65;RPL=77;RPP=170.214;RPPR=144.156;RPR=0;RUN=1;SAF=77;SAP=170.214;SAR=0;SRF=65;SRP=144.156;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:48:27,21:27:920:21:714:-50.1275,0,-68.6613 0/1:46:23,23:23:800:23:797:-58.2021,0,-58.4732 0/1:23:8,15:8:278:15:521:-40.2959,0,-18.4343 0/1:25:7,18:7:232:18:627:-49.231,0,-13.6788 dDocent_Contig_3673 150 . T C 28461.2 . AB=0.847682;ABP=954.288;AC=5;AF=0.625;AN=8;AO=968;CIGAR=1X;DP=1107;DPB=1107;DPRA=0;EPP=2105;EPPR=304.845;GTI=0;LEN=1;MEANALT=1;MQM=39.9804;MQMR=46.4029;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.985612;PAO=0;PQA=0;PQR=0;PRO=0;QA=37473;QR=5423;RO=139;RPL=0;RPP=2105;RPPR=304.845;RPR=968;RUN=1;SAF=0;SAP=2105;SAR=968;SRF=0;SRP=304.845;SRR=139;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:289:39,250:39:1517:250:9632:-716.825,0,-44.4844 0/1:334:61,273:61:2365:273:10687:-790.292,0,-105.766 0/1:283:38,245:38:1503:245:9464:-704.459,0,-47.7829 1/1:201:1,200:1:38:200:7690:-638.14,-56.7585,0 dDocent_Contig_3674 24 . T C 7637.39 . AB=0.0441696;ABP=1024.51;AC=0;AF=0;AN=8;AO=25;CIGAR=1M6D4M1X6M1I3M;DP=566;DPB=454.857;DPRA=0;EPP=57.2971;EPPR=267.93;GTI=0;LEN=1;MEANALT=9;MQM=56.52;MQMR=60;NS=4;NUMALT=7;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=932;QR=4750;RO=122;RPL=0;RPP=57.2971;RPPR=267.93;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=122;SRP=267.93;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:212:83,12,3,1,7,0,26,69:83:3224:12,3,1,7,0,26,69:460,116,36,236,0,987,2524:-181.234,-168.468,-429.767,-196.692,-423.851,-460.7,-203.282,-430.442,-458.665,-467.892,-187.112,-414.271,-442.494,-449.085,-449.915,-206.22,-433.379,-461.603,-468.193,-452.022,-471.131,-125.285,-352.446,-380.67,-387.26,-371.089,-390.198,-382.371,0,-227.159,-255.382,-261.973,-245.803,-264.911,-183.979,-244.139 0|0:172:16,8,2,0,9,0,75,56:16:631:8,2,0,9,0,75,56:298,80,0,350,0,2854,2081:-347.617,-328.039,-377.55,-345.843,-373.368,-397.16,-352.434,-379.959,-397.762,-404.353,-323.733,-351.258,-369.062,-375.653,-372.943,-352.434,-379.959,-397.762,-404.353,-375.653,-404.353,-118.369,-145.897,-163.7,-170.291,-141.59,-170.291,-147.713,-182.141,-209.667,-227.47,-234.061,-205.36,-234.061,0,-217.203 0|0:125:10,23,5,7,7,0,22,44:10:385:23,5,7,7,0,22,44:855,195,250,265,0,822,1602:-166.171,-99.2151,-123.902,-153.151,-114.795,-183.256,-148.803,-110.447,-164.383,-178.305,-147.528,-109.172,-163.108,-158.76,-177.031,-169.181,-130.825,-184.761,-180.413,-179.138,-200.791,-101.888,-63.5325,-117.468,-113.12,-111.846,-133.498,-126.876,-38.3545,0,-53.9345,-49.5871,-48.3121,-69.9647,-2.67287,-56.7194 0|0:57:13,1,6,0,2,5,25,4:13:510:1,6,0,2,5,25,4:39,244,0,81,200,947,150:-73.7058,-74.4133,-116.057,-57.4897,-96.2289,-97.6287,-77.6192,-116.358,-99.4349,-119.564,-70.9475,-109.686,-92.7632,-112.892,-112.29,-61.1427,-99.8816,-82.9585,-103.088,-96.416,-101.582,0,-38.7357,-21.8123,-41.9414,-35.2699,-25.4656,-34.4156,-65.3334,-104.072,-87.1488,-107.277,-100.606,-90.8015,-29.6572,-106.073 dDocent_Contig_3676 33 . C T 4691.1 . AB=0.478916;ABP=4.29225;AC=4;AF=0.5;AN=8;AO=159;CIGAR=1X;DP=332;DPB=332;DPRA=0;EPP=348.274;EPPR=378.675;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6368;QR=6914;RO=173;RPL=0;RPP=348.274;RPPR=378.675;RPR=159;RUN=1;SAF=159;SAP=348.274;SAR=0;SRF=173;SRP=378.675;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:156:73,83:73:2911:83:3336:-253.326,0,-215.12 0/1:105:72,33:72:2883:33:1328:-88.1734,0,-227.967 0/1:46:22,24:22:882:24:948:-71.7662,0,-65.8404 0/1:25:6,19:6:238:19:756:-60.834,0,-14.2682 dDocent_Contig_3677 11 . G A 11431.8 . AB=0.658407;ABP=126.154;AC=4;AF=0.5;AN=8;AO=372;CIGAR=1X;DP=565;DPB=565;DPRA=0;EPP=810.798;EPPR=422.104;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.984456;PAO=0;PQA=0;PQR=0;PRO=0;QA=14645;QR=7610;RO=193;RPL=0;RPP=810.798;RPPR=422.104;RPR=372;RUN=1;SAF=372;SAP=810.798;SAR=0;SRF=193;SRP=422.104;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:157:50,107:50:1977:107:4188:-329.661,0,-130.872 0/1:215:70,145:70:2754:145:5723:-450.202,0,-183.278 0/1:113:40,73:40:1580:73:2897:-226.833,0,-108.433 0/1:80:33,47:33:1299:47:1837:-141.468,0,-93.1018 dDocent_Contig_3679 26 . T A 287.964 . AB=0.178571;ABP=78.3914;AC=1;AF=0.125;AN=8;AO=15;CIGAR=1X;DP=271;DPB=271;DPRA=1.34759;EPP=35.5824;EPPR=558.907;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.996094;PAO=0;PQA=0;PQR=0;PRO=0;QA=606;QR=10232;RO=256;RPL=0;RPP=35.5824;RPPR=558.907;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=256;SRP=558.907;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:84:69,15:69:2755:15:606:-29.5923,0,-222.775 0/0:80:80,0:80:3206:0:0:0,-24.0824,-288.606 0/0:70:70,0:70:2802:0:0:0,-21.0721,-252.29 0/0:37:37,0:37:1469:0:0:0,-11.1381,-132.454 dDocent_Contig_3680 69 . G A 5360.88 . AB=0.795349;ABP=165.911;AC=4;AF=0.5;AN=8;AO=171;CIGAR=1X;DP=215;DPB=215;DPRA=0;EPP=374.332;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6721;QR=1717;RO=44;RPL=171;RPP=374.332;RPPR=98.5551;RPR=0;RUN=1;SAF=171;SAP=374.332;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:37:8,29:8:316:29:1115:-89.4951,0,-17.6669 0/1:91:23,68:23:894:68:2692:-215.015,0,-53.3787 0/1:54:8,46:8:315:46:1836:-149.193,0,-12.4596 0/1:33:5,28:5:192:28:1078:-87.3743,0,-7.71436 dDocent_Contig_3681 46 . G C 32.3538 . AB=0.15;ABP=24.2907;AC=1;AF=0.125;AN=8;AO=12;CIGAR=1X;DP=224;DPB=224;DPRA=0.649123;EPP=29.068;EPPR=456.848;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=469;QR=8243;RO=209;RPL=0;RPP=29.068;RPPR=456.848;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=209;SRP=456.848;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:99:91,8:91:3591:8:317:0,-0.905953,-294.34 0/0:76:73,0:73:2895:0:0:0,-21.9752,-260.343 0/0:29:28,1:28:1103:1:41:0,-4.6353,-95.4619 0/1:20:17,3:17:654:3:111:-4.3315,0,-53.1575 dDocent_Contig_3682 98 . N A 198.769 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=8;CIGAR=1X;DP=8;DPB=8;DPRA=0;EPP=20.3821;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=207;QR=0;RO=0;RPL=8;RPP=20.3821;RPPR=0;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:4:0,4:0:0:4:106:-9.80248,-1.20412,0 1/1:2:0,2:0:0:2:57:-5.41422,-0.60206,0 1/1:2:0,2:0:0:2:44:-4.17984,-0.60206,0 dDocent_Contig_3683 78 . A G 76.311 . AB=0.112676;ABP=95.5273;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=191;DPB=191;DPRA=1.775;EPP=20.3821;EPPR=400.39;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.89071;PAO=0;PQA=0;PQR=0;PRO=0;QA=327;QR=7224;RO=183;RPL=8;RPP=20.3821;RPPR=400.39;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=183;SRP=400.39;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:71:63,8:63:2488:8:327:-8.42698,0,-202.7 0/0:63:63,0:63:2491:0:0:0,-18.9649,-224.342 0/0:38:38,0:38:1485:0:0:0,-11.4391,-133.894 0/0:19:19,0:19:760:0:0:0,-5.71957,-68.7212 dDocent_Contig_3684 107 . N C 264.149 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=9;CIGAR=1X;DP=9;DPB=9;DPRA=0;EPP=22.5536;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=9.4572;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=290;QR=0;RO=0;RPL=0;RPP=22.5536;RPPR=0;RPR=9;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:9:0,9:0:0:9:290:-26.4149,-2.70927,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_3686 82 . A C 136.013 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=140;QR=0;RO=0;RPL=0;RPP=11.6962;RPPR=0;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1:0,1:0:0:1:35:-3.49863,-0.30103,0 ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:105:-9.79616,-0.90309,0 ./.:.:.:.:.:.:.:. dDocent_Contig_3687 22 . T C 2109.93 . AB=0.334728;ABP=59.7139;AC=4;AF=0.5;AN=8;AO=80;CIGAR=1X;DP=239;DPB=239;DPRA=0;EPP=176.728;EPPR=348.274;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3185;QR=6246;RO=159;RPL=0;RPP=176.728;RPPR=348.274;RPR=80;RUN=1;SAF=80;SAP=176.728;SAR=0;SRF=159;SRP=348.274;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:97:62,35:62:2455:35:1391:-96.2528,0,-191.915 0/1:77:49,28:49:1930:28:1121:-77.9985,0,-150.741 0/1:30:21,9:21:825:9:357:-23.4621,0,-65.5402 0/1:35:27,8:27:1036:8:316:-18.2696,0,-83.0035 dDocent_Contig_3688 1 . N G 77.84 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=4.60517;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:82:-7.77968,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_3689 42 . T C 4632 . AB=0.787611;ABP=84.2003;AC=5;AF=0.625;AN=8;AO=139;CIGAR=1X;DP=163;DPB=163;DPRA=0;EPP=304.845;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.877698;PAIREDR=0.958333;PAO=0;PQA=0;PQR=0;PRO=0;QA=5553;QR=969;RO=24;RPL=0;RPP=304.845;RPPR=55.1256;RPR=139;RUN=1;SAF=139;SAP=304.845;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:38:10,28:10:401:28:1123:-89.9137,0,-25.0104 1/1:50:0,50:0:0:50:1988:-179.11,-15.0515,0 0/1:54:5,49:5:201:49:1961:-160.433,0,-2.21527 0/1:21:9,12:9:367:12:481:-37.3185,0,-27.0736 dDocent_Contig_3691 9 . C G 9108.09 . AB=0.761702;ABP=142.807;AC=6;AF=0.75;AN=8;AO=288;CIGAR=1X;DP=344;DPB=344;DPRA=0;EPP=628.394;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=10922;QR=2164;RO=56;RPL=0;RPP=628.394;RPPR=124.613;RPR=288;RUN=1;SAF=288;SAP=628.394;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:129:22,107:22:850:107:4026:-323.615,0,-37.9887 0/1:106:34,72:34:1314:72:2746:-215.415,0,-86.6384 1/1:71:0,71:0:0:71:2711:-244.182,-21.3731,0 1/1:38:0,38:0:0:38:1439:-129.791,-11.4391,0 dDocent_Contig_3692 10 . A G 2441.31 . AB=0.50303;ABP=3.02346;AC=4;AF=0.5;AN=8;AO=83;CIGAR=1X;DP=165;DPB=165;DPRA=0;EPP=183.243;EPPR=181.071;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3306;QR=3270;RO=82;RPL=0;RPP=183.243;RPPR=181.071;RPR=83;RUN=1;SAF=83;SAP=183.243;SAR=0;SRF=82;SRP=181.071;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:75:46,29:46:1835:29:1160:-82.1009,0,-142.78 0/1:57:19,38:19:764:38:1497:-117.805,0,-51.9232 0/1:18:11,7:11:442:7:286:-20.6963,0,-34.7168 0/1:15:6,9:6:229:9:363:-28.5186,0,-16.4542 dDocent_Contig_3693 181 . T A 83.5372 . AB=0.117647;ABP=89.3583;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=139;DPB=139;DPRA=2.87324;EPP=20.3821;EPPR=287.473;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=325;QR=5094;RO=131;RPL=8;RPP=20.3821;RPPR=287.473;RPR=0;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=287.473;SRR=131;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:68:60,8:60:2379:8:325:-9.14959,0,-193.808 0/0:26:26,0:26:1018:0:0:0,-7.82678,-91.9189 0/0:32:32,0:32:1190:0:0:0,-9.63296,-107.367 0/0:13:13,0:13:507:0:0:0,-3.91339,-45.9705 dDocent_Contig_3694 7 . T C 15813.8 . AB=0.884615;ABP=270.268;AC=6;AF=0.75;AN=8;AO=481;CIGAR=1X;DP=509;DPB=509;DPRA=0;EPP=1047.49;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1.25;MQM=59.9397;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.997921;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=18418;QR=1030;RO=27;RPL=0;RPP=1047.49;RPPR=61.6401;RPR=481;RUN=1;SAF=481;SAP=1047.49;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:142:15,127:15:568:127:4879:-395.614,0,-8.71423 1/1:181:0,181:0:0:181:6934:-623.941,-54.4864,0 1/1:120:3,116:3:117:116:4430:-387.91,-25.1296,0 0/1:66:9,57:9:345:57:2175:-176.109,0,-11.5403 dDocent_Contig_3695 1 . N G 76.9006 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=4.60517;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:81:-7.68573,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_3696 9 . A G 9970.44 . AB=0.516176;ABP=4.55588;AC=4;AF=0.5;AN=8;AO=351;CIGAR=1X;DP=680;DPB=680;DPRA=0;EPP=765.197;EPPR=717.425;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=13402;QR=12575;RO=329;RPL=0;RPP=765.197;RPPR=717.425;RPR=351;RUN=1;SAF=351;SAP=765.197;SAR=0;SRF=329;SRP=717.425;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:160:94,66:94:3621:66:2504:-177.398,0,-277.843 0/1:244:157,87:157:5989:87:3296:-223.327,0,-465.518 0/1:164:29,135:29:1103:135:5179:-416.749,0,-50.2034 0/1:112:49,63:49:1862:63:2423:-184.56,0,-134.11 dDocent_Contig_3697 14 . C A 84.6902 . AB=0.102041;ABP=205.223;AC=2;AF=0.25;AN=8;AO=24;CIGAR=1X;DP=342;DPB=342;DPRA=1.05691;EPP=55.1256;EPPR=693.539;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=945;QR=12665;RO=318;RPL=0;RPP=55.1256;RPPR=693.539;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=318;SRP=693.539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:115:103,12:103:4100:12:483:-9.20314,0,-334.357 0/0:113:104,9:104:4154:9:346:0,-2.52452,-342.334 0/0:82:82,0:82:3254:0:0:0,-24.6845,-292.925 0/1:32:29,3:29:1157:3:116:-1.18406,0,-94.77 dDocent_Contig_3700 1 . N A 63.6481 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=58.5;MQMR=0;NS=1;NUMALT=1;ODDS=4.60517;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=67;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:67:-6.36048,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_3701 74 . T C 129.742 . AB=0.352941;ABP=6.20364;AC=2;AF=0.25;AN=8;AO=7;CIGAR=1X;DP=51;DPB=51;DPRA=0.8;EPP=18.2106;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=256;QR=1601;RO=44;RPL=7;RPP=18.2106;RPPR=98.5551;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:19:18,1:18:648:1:39:0,-1.82301,-54.7537 0/0:15:15,0:15:548:0:0:0,-4.51545,-49.6581 0/1:6:5,1:5:183:1:35:-1.69245,0,-15.0206 0/1:11:6,5:6:222:5:182:-13.4237,0,-17.0267 dDocent_Contig_3702 9 . G T 505.406 . AB=0.282051;ABP=35.1926;AC=2;AF=0.25;AN=8;AO=24;CIGAR=1X;DP=126;DPB=126;DPRA=2.29167;EPP=55.1256;EPPR=224.5;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.980392;PAO=0;PQA=0;PQR=0;PRO=0;QA=901;QR=3878;RO=102;RPL=0;RPP=55.1256;RPPR=224.5;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=102;SRP=224.5;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:32:30,2:30:1131:2:62:0,-3.74515,-96.2011 0/1:30:21,9:21:792:9:350:-22.8305,0,-62.5689 0/1:48:35,13:35:1347:13:489:-29.9039,0,-107.062 0/0:16:16,0:16:608:0:0:0,-4.81648,-55.0571 dDocent_Contig_3703 18 . T A 5489.84 . AB=0.685039;ABP=78.5502;AC=4;AF=0.5;AN=8;AO=174;CIGAR=1X;DP=254;DPB=254;DPRA=0;EPP=380.846;EPPR=174.557;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6994;QR=3180;RO=79;RPL=0;RPP=380.846;RPPR=174.557;RPR=174;RUN=1;SAF=174;SAP=380.846;SAR=0;SRF=79;SRP=174.557;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:53:17,36:17:677:36:1432:-113.174,0,-45.3055 0/1:105:15,89:15:606:89:3596:-292.164,0,-23.3764 0/1:62:32,30:32:1302:30:1197:-89.3406,0,-98.7748 0/1:34:15,19:15:595:19:769:-59.2951,0,-43.6504 dDocent_Contig_3704 28 . G A 926.094 . AB=0.276316;ABP=69.0688;AC=4;AF=0.5;AN=8;AO=42;CIGAR=1X;DP=152;DPB=152;DPRA=0;EPP=94.2121;EPPR=241.872;GTI=0;LEN=1;MEANALT=1;MQM=45.7143;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.190476;PAIREDR=0.845455;PAO=0;PQA=0;PQR=0;PRO=0;QA=1655;QR=4345;RO=110;RPL=0;RPP=94.2121;RPPR=241.872;RPR=42;RUN=1;SAF=42;SAP=94.2121;SAR=0;SRF=110;SRP=241.872;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:58:41,17:41:1634:17:679:-40.4991,0,-129.831 0/1:28:21,7:21:828:7:261:-14.2714,0,-66.4031 0/1:45:37,8:37:1450:8:320:-14.2746,0,-117.203 0/1:21:11,10:11:433:10:395:-28.5541,0,-32.9987 dDocent_Contig_3705 39 . A T 69.0287 . AB=0.101562;ABP=179.51;AC=2;AF=0.25;AN=8;AO=14;CIGAR=1M1D2M1X1M1X;DP=225;DPB=223;DPRA=2.34524;EPP=33.4109;EPPR=456.848;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=0;PAIREDR=0.937799;PAO=0;PQA=0;PQR=0;PRO=0;QA=555;QR=8219;RO=209;RPL=0;RPP=33.4109;RPPR=456.848;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=209;SRP=456.848;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:58:52,6:52:2052:6:239:-4.42415,0,-167.427 0|0:69:68,1:68:2674:1:36:0,-17.1728,-237.216 0|1:70:62,7:62:2427:7:280:-4.67237,0,-197.743 0|0:28:27,0:27:1066:0:0:0,-8.12781,-95.9063 dDocent_Contig_3706 11 . T A 5427.03 . AB=0.494505;ABP=3.10575;AC=4;AF=0.5;AN=8;AO=180;CIGAR=1X;DP=364;DPB=364;DPRA=0;EPP=393.875;EPPR=402.561;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7294;QR=7380;RO=184;RPL=0;RPP=393.875;RPPR=402.561;RPR=180;RUN=1;SAF=180;SAP=393.875;SAR=0;SRF=184;SRP=402.561;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:108:60,48:60:2407:48:1949:-143.087,0,-184.268 0/1:95:46,49:46:1853:49:1994:-151.043,0,-138.373 0/1:118:50,68:50:1990:68:2745:-211.63,0,-143.775 0/1:43:28,15:28:1130:15:606:-41.9332,0,-89.037 dDocent_Contig_3707 9 . G A 1613.27 . AB=0.166667;ABP=587.86;AC=4;AF=0.5;AN=8;AO=101;CIGAR=1X;DP=606;DPB=606;DPRA=0;EPP=222.329;EPPR=1099.6;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3861;QR=19255;RO=505;RPL=0;RPP=222.329;RPPR=1099.6;RPR=101;RUN=1;SAF=101;SAP=222.329;SAR=0;SRF=505;SRP=1099.6;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:218:176,42:176:6695:42:1604:-79.0039,0,-536.823 0/1:224:189,35:189:7191:35:1339:-53.3623,0,-579.633 0/1:108:91,17:91:3487:17:649:-26.2341,0,-281.447 0/1:56:49,7:49:1882:7:269:-7.71651,0,-152.768 dDocent_Contig_3708 14 . G A 85.7904 . AB=0.178571;ABP=28.1373;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=369;DPB=369;DPRA=0.246334;EPP=13.8677;EPPR=793.426;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=197;QR=14397;RO=364;RPL=0;RPP=13.8677;RPPR=793.426;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=364;SRP=793.426;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:166:166,0:166:6663:0:0:0,-49.971,-599.364 0/0:95:95,0:95:3745:0:0:0,-28.5978,-337.062 0/0:80:80,0:80:3110:0:0:0,-24.0824,-279.979 0/1:28:23,5:23:879:5:197:-9.67595,0,-70.978 dDocent_Contig_3709 88 . G A 143.559 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=6;CIGAR=1X2M1D4M;DP=6;DPB=5.25;DPRA=0;EPP=16.0391;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=34.8333;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=0.5;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=153;QR=0;RO=0;RPL=0;RPP=16.0391;RPPR=0;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:4:0,4:0:0:4:79:-6.48341,-1.20412,0 1|1:1:0,1:0:0:1:37:-3.69783,-0.30103,0 1|1:1:0,1:0:0:1:37:-3.69142,-0.30103,0 .:.:.:.:.:.:.:. dDocent_Contig_3710 178 . G A 5242.09 . AB=0.862319;ABP=160.363;AC=5;AF=0.625;AN=8;AO=159;CIGAR=1X;DP=179;DPB=179;DPRA=0;EPP=348.274;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6359;QR=810;RO=20;RPL=159;RPP=348.274;RPPR=46.4397;RPR=0;RUN=1;SAF=0;SAP=348.274;SAR=159;SRF=0;SRP=46.4397;SRR=20;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:51:5,46:5:201:46:1835:-150.005,0,-3.11799 0/1:44:7,37:7:286:37:1472:-119.478,0,-12.8695 0/1:43:7,36:7:284:36:1457:-118.43,0,-12.9897 1/1:41:1,40:1:39:40:1595:-139.885,-8.44567,0 dDocent_Contig_3711 106 . N G 165.336 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=6;CIGAR=2X;DP=6;DPB=6;DPRA=0;EPP=16.0391;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=169;QR=0;RO=0;RPL=0;RPP=16.0391;RPPR=0;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. 1|1:2:0,2:0:0:2:53:-5.03457,-0.60206,0 1|1:2:0,2:0:0:2:50:-4.74932,-0.60206,0 1|1:2:0,2:0:0:2:66:-6.26831,-0.60206,0 dDocent_Contig_3713 11 . A T 108.277 . AB=0.163265;ABP=51.2702;AC=3;AF=0.375;AN=8;AO=8;CIGAR=1X;DP=65;DPB=65;DPRA=1.02083;EPP=20.3821;EPPR=126.784;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=311;QR=2294;RO=57;RPL=0;RPP=20.3821;RPPR=126.784;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:16:16,0:16:641:0:0:0,-4.81648,-58.0249 0/1:21:17,4:17:685:4:151:-7.6315,0,-55.6569 0/1:21:18,3:18:725:3:120:-4.86568,0,-59.2538 0/1:7:6,1:6:243:1:40:-1.88847,0,-20.141 dDocent_Contig_3714 17 . C G 31.7683 . AB=0.101852;ABP=151.716;AC=1;AF=0.125;AN=8;AO=11;CIGAR=1X;DP=288;DPB=288;DPRA=1.8;EPP=26.8965;EPPR=595.854;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.99639;PAO=0;PQA=0;PQR=0;PRO=0;QA=405;QR=10935;RO=277;RPL=0;RPP=26.8965;RPPR=604.508;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=276;SRP=595.854;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:66:66,0:66:2621:0:0:0,-19.868,-236.022 0/1:108:97,11:97:3875:11:405:-4.27345,0,-316.237 0/0:67:67,0:67:2620:0:0:0,-20.169,-235.953 0/0:47:47,0:47:1819:0:0:0,-14.1484,-163.909 dDocent_Contig_3715 47 . T C 3177.63 . AB=0.618421;ABP=12.2676;AC=6;AF=0.75;AN=8;AO=99;CIGAR=1X;DP=128;DPB=128;DPRA=0;EPP=217.986;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3796;QR=1137;RO=29;RPL=0;RPP=217.986;RPPR=65.983;RPR=99;RUN=1;SAF=99;SAP=217.986;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:37:11,26:11:433:26:1020:-80.961,0,-28.1847 0/1:39:18,21:18:704:21:807:-61.2033,0,-51.9425 1/1:32:0,32:0:0:32:1233:-111.245,-9.63296,0 1/1:20:0,20:0:0:20:736:-66.5471,-6.0206,0 dDocent_Contig_3716 24 . G A 12394.1 . AB=0.866438;ABP=343.575;AC=5;AF=0.625;AN=8;AO=373;CIGAR=1X;DP=416;DPB=416;DPRA=0;EPP=812.97;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=14949;QR=1712;RO=43;RPL=0;RPP=812.97;RPPR=96.3836;RPR=373;RUN=1;SAF=373;SAP=812.97;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:124:4,120:4:157:120:4789:-416.395,-22.8205,0 0/1:140:13,127:13:505:127:5115:-418.056,0,-3.6409 0/1:104:17,87:17:684:87:3514:-284.972,0,-30.5833 0/1:48:9,39:9:366:39:1531:-123.582,0,-18.8555 dDocent_Contig_3717 139 . A G 5541.83 . AB=0.571429;ABP=22.2433;AC=4;AF=0.5;AN=8;AO=248;CIGAR=2X;DP=434;DPB=434;DPRA=0;EPP=541.535;EPPR=404.733;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=59.9027;NS=4;NUMALT=1;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7653;QR=6875;RO=185;RPL=0;RPP=541.535;RPPR=404.733;RPR=248;RUN=1;SAF=0;SAP=541.535;SAR=248;SRF=0;SRP=404.733;SRR=185;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:132:56,76:56:2045:76:2322:-169.49,0,-144.549 0|1:135:74,60:74:2774:60:1920:-132.44,0,-209.239 0|1:114:41,73:41:1527:73:2132:-157.801,0,-103.389 0|1:53:14,39:14:529:39:1279:-99.4417,0,-31.9971 dDocent_Contig_3718 13 . T C 2047.55 . AB=0.0196078;ABP=514.158;AC=0;AF=0;AN=8;AO=5;CIGAR=1X3M2X2M1X;DP=374;DPB=374;DPRA=0;EPP=13.8677;EPPR=530.678;GTI=0;LEN=1;MEANALT=4.33333;MQM=60;MQMR=60;NS=4;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=201;QR=9613;RO=243;RPL=0;RPP=13.8677;RPPR=530.678;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=243;SRP=530.678;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:119:82,0,1,2,33:82:3237:0,1,2,33:0,40,81,1317:-83.8358,-108.52,-374.858,-105.225,-371.563,-371.262,-101.84,-368.178,-364.883,-367.576,0,-266.397,-263.102,-259.717,-256.463 0|0:119:82,4,0,1,32:82:3235:4,0,1,32:154,0,41,1283:-81.0294,-93.0732,-358.028,-105.714,-359.232,-371.874,-102.33,-355.848,-368.49,-368.189,0,-253.526,-266.168,-262.784,-256.535 0|0:88:49,14,1,9,14:49:1952:14,1,9,14:547,41,358,561:-31.4718,-1.25541,-157.785,-42.8378,-158.615,-203.281,-16.7468,-132.525,-174.108,-174.783,0,-115.781,-157.364,-131.273,-156.533 0|0:48:30,4,3,4,7:30:1189:4,3,4,7:160,120,163,273:-13.402,-9.25193,-105.916,-12.5472,-97.2343,-109.512,-8.98281,-93.6714,-96.9666,-105.648,0,-84.6832,-87.9784,-84.4154,-95.7565 dDocent_Contig_3721 14 . C T 1524.66 . AB=0.415385;ABP=11.0949;AC=4;AF=0.5;AN=8;AO=54;CIGAR=1X;DP=130;DPB=130;DPRA=0;EPP=120.27;EPPR=168.042;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.851852;PAIREDR=0.921053;PAO=0;PQA=0;PQR=0;PRO=0;QA=2169;QR=3078;RO=76;RPL=0;RPP=120.27;RPPR=168.042;RPR=54;RUN=1;SAF=54;SAP=120.27;SAR=0;SRF=76;SRP=168.042;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:38:24,14:24:980:14:560:-39.3036,0,-77.0547 0/1:49:28,21:28:1125:21:840:-61.1613,0,-86.7798 0/1:28:16,12:16:651:12:486:-35.6624,0,-50.4932 0/1:15:8,7:8:322:7:283:-21.3281,0,-24.8324 dDocent_Contig_3722 189 . T C 61.0061 . AB=0.101796;ABP=233.017;AC=1;AF=0.125;AN=8;AO=29;CIGAR=1X;DP=481;DPB=481;DPRA=0;EPP=65.983;EPPR=984.516;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1122;QR=17674;RO=452;RPL=29;RPP=65.983;RPPR=984.516;RPR=0;RUN=1;SAF=0;SAP=65.983;SAR=29;SRF=0;SRP=984.516;SRR=452;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:149:147,2:147:5792:2:81:0,-37.1677,-513.411 0/1:167:150,17:150:5835:17:635:-7.19751,0,-474.706 0/0:117:110,7:110:4251:7:285:0,-9.1961,-356.553 0/0:48:45,3:45:1796:3:121:0,-3.16924,-150.577 dDocent_Contig_3724 53 . T C 5317.17 . AB=0.53869;ABP=7.3791;AC=4;AF=0.5;AN=8;AO=181;CIGAR=1X;DP=336;DPB=336;DPRA=0;EPP=396.047;EPPR=339.589;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7078;QR=6175;RO=155;RPL=181;RPP=396.047;RPPR=339.589;RPR=0;RUN=1;SAF=181;SAP=396.047;SAR=0;SRF=155;SRP=339.589;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:123:69,54:69:2781:54:2135:-155.3,0,-213.369 0/1:103:28,75:28:1126:75:2977:-237.009,0,-70.6173 0/1:68:47,21:47:1832:21:814:-53.1014,0,-144.629 0/1:42:11,31:11:436:31:1152:-91.2962,0,-26.951 dDocent_Contig_3725 12 . T C 11316.9 . AB=0.86692;ABP=310.558;AC=5;AF=0.625;AN=8;AO=338;CIGAR=1X;DP=373;DPB=373;DPRA=0;EPP=736.968;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=13492;QR=1415;RO=35;RPL=0;RPP=736.968;RPPR=79.0118;RPR=338;RUN=1;SAF=338;SAP=736.968;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:130:15,115:15:609:115:4592:-374.072,0,-16.0137 1/1:110:0,110:0:0:110:4413:-397.098,-33.1133,0 0/1:70:7,63:7:286:63:2531:-206.85,0,-5.04272 0/1:63:13,50:13:520:50:1956:-157.266,0,-28.18 dDocent_Contig_3726 9 . G A 7585.57 . AB=0.612293;ABP=49.3402;AC=4;AF=0.5;AN=8;AO=259;CIGAR=2X;DP=423;DPB=423;DPRA=0;EPP=565.422;EPPR=359.132;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.993902;PAO=0;PQA=0;PQR=0;PRO=0;QA=9890;QR=6246;RO=164;RPL=0;RPP=565.422;RPPR=359.132;RPR=259;RUN=1;SAF=259;SAP=565.422;SAR=0;SRF=164;SRP=359.132;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:177:68,109:68:2609:109:4141:-319.481,0,-181.713 0|1:140:41,99:41:1563:99:3817:-301.481,0,-98.7914 0|1:67:36,31:36:1375:31:1171:-85.5119,0,-103.864 0|1:39:19,20:19:699:20:761:-57.0732,0,-51.4933 dDocent_Contig_3727 34 . T A 1103.92 . AB=0.283019;ABP=68.0316;AC=3;AF=0.375;AN=8;AO=45;CIGAR=1X;DP=223;DPB=223;DPRA=0.828125;EPP=100.727;EPPR=389.532;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1787;QR=7049;RO=178;RPL=0;RPP=100.727;RPPR=389.532;RPR=45;RUN=1;SAF=45;SAP=100.727;SAR=0;SRF=178;SRP=389.532;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:64:64,0:64:2549:0:0:0,-19.2659,-229.552 0/1:39:34,5:34:1348:5:201:-6.73072,0,-109.842 0/1:70:47,23:47:1830:23:917:-61.7646,0,-143.854 0/1:50:33,17:33:1322:17:669:-45.4886,0,-104.192 dDocent_Contig_3728 56 . T C 3424.67 . AB=0.629213;ABP=28.824;AC=4;AF=0.5;AN=8;AO=112;CIGAR=1X;DP=178;DPB=178;DPRA=0;EPP=237.607;EPPR=144.156;GTI=0;LEN=1;MEANALT=1.25;MQM=59.3036;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=0.955357;PAIREDR=0.984615;PAO=0;PQA=0;PQR=0;PRO=0;QA=4450;QR=2459;RO=65;RPL=112;RPP=246.215;RPPR=144.156;RPR=0;RUN=1;SAF=111;SAP=237.607;SAR=1;SRF=65;SRP=144.156;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:63:31,31:31:1173:31:1231:-91.8044,0,-87.0487 0/1:70:22,48:22:836:48:1895:-149.479,0,-54.4916 0/1:27:8,19:8:300:19:760:-60.5925,0,-19.2277 0/1:18:4,14:4:150:14:564:-45.5813,0,-8.44726 dDocent_Contig_3729 105 . N C 717.009 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=23;CIGAR=3X;DP=23;DPB=23;DPRA=0;EPP=52.9542;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=786;QR=0;RO=0;RPL=0;RPP=52.9542;RPPR=0;RPR=23;RUN=1;SAF=0;SAP=52.9542;SAR=23;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:10:0,10:0:0:10:345:-31.3838,-3.0103,0 1|1:13:0,13:0:0:13:441:-40.0161,-3.91339,0 .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. dDocent_Contig_3730 7 . T C 3227.35 . AB=0.0533333;ABP=132.98;AC=8;AF=1;AN=8;AO=4;CIGAR=1X7M;DP=234;DPB=234;DPRA=0;EPP=11.6962;EPPR=131.127;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=4;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=152;QR=2312;RO=59;RPL=0;RPP=11.6962;RPPR=131.127;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=59;SRP=131.127;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:123:35,46,41,0,0:35:1374:46,41,0,0:1800,1573,0,0:-153.563,-16.095,-115.26,-34.9915,0,-135.658,-164.099,-129.107,-148,-277.108,-164.099,-129.107,-148,-277.108,-277.108 1|1:75:16,28,26,0,4:16:623:28,26,0,4:1096,1002,0,152:-116.379,-31.0731,-73.8479,-38.92,0,-82.2951,-121.196,-82.2768,-90.1219,-172.398,-108.731,-69.8116,-77.657,-159.933,-158.729 1|1:26:8,9,9,0,0:8:315:9,9,0,0:346,350,0,0:-28.8385,-2.84425,-26.0517,-2.48097,0,-25.6905,-31.2467,-28.761,-28.3998,-57.1634,-31.2467,-28.761,-28.3998,-57.1634,-57.1634 1|1:10:0,7,1,2,0:0:0:7,1,2,0:274,39,78,0:-28.9425,-6.41176,-4.30455,-25.7367,-3.20588,-25.4357,-22.531,0,-19.3253,-21.9289,-28.9425,-6.41176,-25.7367,-22.531,-28.9425 dDocent_Contig_3731 28 . G T 285.164 . AB=0.128492;ABP=217.598;AC=2;AF=0.25;AN=8;AO=28;CIGAR=1X;DP=284;DPB=284;DPRA=0;EPP=63.8115;EPPR=552.393;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.428571;PAIREDR=0.980237;PAO=0;PQA=0;PQR=0;PRO=0;QA=1136;QR=10036;RO=253;RPL=0;RPP=63.8115;RPPR=552.393;RPR=28;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=253;SRP=552.393;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:79:73,3:73:2865:3:122:0,-11.9004,-246.6 0/1:131:113,18:113:4501:18:727:-26.3207,0,-365.597 0/1:48:43,5:43:1695:5:205:-4.38557,0,-138.329 0/0:26:24,2:24:975:2:82:0,-0.0471021,-80.2672 dDocent_Contig_3732 74 . T C 3544.02 . AB=0.698925;ABP=66.9403;AC=4;AF=0.5;AN=8;AO=130;CIGAR=1X;DP=186;DPB=186;DPRA=0;EPP=276.683;EPPR=107.861;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.961538;PAIREDR=0.839286;PAO=0;PQA=0;PQR=0;PRO=0;QA=4602;QR=2000;RO=56;RPL=130;RPP=285.302;RPPR=124.613;RPR=0;RUN=1;SAF=129;SAP=276.683;SAR=1;SRF=54;SRP=107.861;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:44:10,34:10:358:34:1212:-96.1361,0,-19.3127 0/1:61:20,41:20:708:41:1469:-114.138,0,-45.6794 0/1:48:21,27:21:762:27:962:-72.4416,0,-54.4574 0/1:33:5,28:5:172:28:959:-76.6766,0,-5.88192 dDocent_Contig_3733 107 . N C 53.2299 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=52;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:45:-4.27477,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:1:0,1:0:0:1:7:-0.699998,-0.30103,0 dDocent_Contig_3734 7 . C T 954.252 . AB=0.428571;ABP=6.73282;AC=1;AF=0.125;AN=8;AO=36;CIGAR=1X;DP=232;DPB=232;DPRA=1.7027;EPP=81.1833;EPPR=417.762;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1346;QR=7346;RO=191;RPL=0;RPP=81.1833;RPPR=417.762;RPR=36;RUN=1;SAF=36;SAP=81.1833;SAR=0;SRF=191;SRP=417.762;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:34:34,0:34:1319:0:0:0,-10.235,-118.997 0/1:84:46,36:46:1772:36:1346:-96.5221,0,-134.833 0/0:59:58,0:58:2210:0:0:0,-17.4597,-198.854 0/0:55:53,0:53:2045:0:0:0,-15.9546,-183.909 dDocent_Contig_3736 26 . T A 1539.48 . AB=0.3625;ABP=29.2851;AC=4;AF=0.5;AN=8;AO=58;CIGAR=1X;DP=160;DPB=160;DPRA=0;EPP=128.956;EPPR=222.329;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2287;QR=3895;RO=101;RPL=0;RPP=128.956;RPPR=222.329;RPR=58;RUN=1;SAF=58;SAP=128.956;SAR=0;SRF=101;SRP=222.329;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:39:28,11:28:1111:11:425:-26.8617,0,-88.5325 0/1:54:33,21:33:1251:21:817:-57.5822,0,-96.6012 0/1:38:29,8:29:1109:8:323:-17.9181,0,-88.5745 0/1:29:11,18:11:424:18:722:-56.5754,0,-29.7748 dDocent_Contig_3739 89 . C A 441.24 . AB=0.232143;ABP=72.8076;AC=2;AF=0.25;AN=8;AO=32;CIGAR=1X;DP=349;DPB=349;DPRA=0;EPP=72.4974;EPPR=691.367;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1079;QR=10888;RO=317;RPL=32;RPP=72.4974;RPPR=691.367;RPR=0;RUN=1;SAF=32;SAP=72.4974;SAR=0;SRF=317;SRP=691.367;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:130:129,1:129:4454:1:35:0,-35.6353,-397.558 0/0:107:102,5:102:3494:5:162:0,-17.3108,-299.789 0/1:69:61,8:61:2081:8:282:-4.95065,0,-166.792 0/1:43:25,18:25:859:18:600:-41.3672,0,-64.6798 dDocent_Contig_3740 18 . G A 3311.27 . AB=0.75;ABP=79.0118;AC=4;AF=0.5;AN=8;AO=105;CIGAR=1X;DP=140;DPB=140;DPRA=0;EPP=231.015;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4190;QR=1394;RO=35;RPL=0;RPP=231.015;RPPR=79.0118;RPR=105;RUN=1;SAF=105;SAP=231.015;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:51:13,38:13:518:38:1520:-121.689,0,-31.6111 0/1:31:7,24:7:275:24:962:-77.5463,0,-15.7844 0/1:31:7,24:7:286:24:944:-75.9279,0,-16.7829 0/1:27:8,19:8:315:19:764:-60.9535,0,-20.5838 dDocent_Contig_3741 26 . C A 221.793 . AB=0.140496;ABP=138.844;AC=4;AF=0.5;AN=8;AO=17;CIGAR=1X;DP=121;DPB=121;DPRA=0;EPP=39.9253;EPPR=228.843;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=679;QR=4046;RO=104;RPL=0;RPP=39.9253;RPPR=228.843;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=104;SRP=228.843;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:34:30,4:30:1179:4:162:-4.73194,0,-96.1603 0/1:26:23,3:23:862:3:119:-3.26861,0,-70.0501 0/1:37:29,8:29:1129:8:317:-17.7567,0,-90.7579 0/1:24:22,2:22:876:2:81:-0.461014,0,-71.9265 dDocent_Contig_3742 82 . G A 194.201 . AB=0.142857;ABP=158.115;AC=2;AF=0.25;AN=8;AO=21;CIGAR=1X;DP=298;DPB=298;DPRA=0.940171;EPP=48.6112;EPPR=604.508;GTI=0;LEN=1;MEANALT=1;MQM=59.5714;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.619048;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=738;QR=9505;RO=277;RPL=21;RPP=48.6112;RPPR=604.508;RPR=0;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=277;SRP=604.508;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:58:48,10:48:1639:10:353:-14.6497,0,-130.335 0/0:78:78,0:78:2672:0:0:0,-23.4803,-240.728 0/1:82:72,10:72:2471:10:348:-6.96421,0,-197.965 0/0:80:79,1:79:2723:1:37:0,-20.3846,-241.621 dDocent_Contig_3743 47 . T C 194.818 . AB=0.126761;ABP=174.832;AC=1;AF=0.125;AN=8;AO=60;CIGAR=1X;DP=806;DPB=806;DPRA=0;EPP=133.299;EPPR=1614.25;GTI=0;LEN=1;MEANALT=1;MQM=59.5667;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.95;PAIREDR=0.997319;PAO=0;PQA=0;PQR=0;PRO=0;QA=2356;QR=29357;RO=746;RPL=0;RPP=133.299;RPPR=1614.25;RPR=60;RUN=1;SAF=60;SAP=133.299;SAR=0;SRF=746;SRP=1622.93;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:300:285,15:285:11219:15:582:0,-37.594,-956.304 0/0:287:263,24:263:10330:24:945:0,-1.04111,-843.732 0/1:142:124,18:124:4874:18:707:-20.5784,0,-395.829 0/0:77:74,3:74:2934:3:122:0,-11.8068,-252.788 dDocent_Contig_3744 160 . C T 137.55 . AB=0.15873;ABP=66.7413;AC=1;AF=0.125;AN=8;AO=10;CIGAR=1X;DP=382;DPB=382;DPRA=0.592476;EPP=24.725;EPPR=776.428;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=372;QR=14619;RO=372;RPL=10;RPP=24.725;RPPR=776.428;RPR=0;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=810.798;SRR=372;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:127:127,0:127:5041:0:0:0,-38.2308,-453.575 0/0:76:76,0:76:2944:0:0:0,-22.8783,-265.059 0/0:116:116,0:116:4528:0:0:0,-34.9195,-407.462 0/1:63:53,10:53:2106:10:372:-14.8519,0,-170.755 dDocent_Contig_3745 35 . T C 13748.1 . AB=0.830739;ABP=491.38;AC=5;AF=0.625;AN=8;AO=427;CIGAR=7M1X4M;DP=514;DPB=510;DPRA=0;EPP=930.229;EPPR=111.584;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=0.969555;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=16749;QR=1867;RO=50;RPL=0;RPP=930.229;RPPR=111.584;RPR=427;RUN=1;SAF=427;SAP=930.229;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:179:20,0,0,159:20:757:0,0,159:0,0,6242:-507.67,-513.69,-575.74,-513.69,-575.74,-575.74,0,-62.429,-62.429,-14.5652 1|1:172:11,12,16,132:11:416:12,16,132:479,624,5127:-435.074,-398.934,-429.419,-387.097,-381.743,-416.378,-17.194,-11.834,0,-11.5524 0|1:94:10,0,4,77:10:362:0,4,77:0,160,3022:-245.558,-248.568,-278.112,-235.387,-264.931,-263.727,0,-29.5704,-16.3733,-6.39108 0|1:69:9,0,1,59:9:332:0,1,59:0,41,2358:-191.496,-194.205,-221.35,-190.821,-217.966,-217.665,0,-27.1121,-23.724,-9.35135 dDocent_Contig_3746 9 . C A 49.3661 . AB=0.173913;ABP=24.253;AC=2;AF=0.25;AN=8;AO=4;CIGAR=1X;DP=44;DPB=44;DPRA=1.09524;EPP=11.6962;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=148;QR=1509;RO=40;RPL=0;RPP=11.6962;RPPR=89.8692;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:11,2:11:410:2:74:-3.11249,0,-33.3326 0/0:12:12,0:12:460:0:0:0,-3.61236,-41.7498 0/0:9:9,0:9:347:0:0:0,-2.70927,-31.5897 0/1:10:8,2:8:292:2:74:-4.01558,0,-23.6163 dDocent_Contig_3747 24 . T A 2761.15 . AB=0.519553;ABP=3.60473;AC=4;AF=0.5;AN=8;AO=93;CIGAR=1X;DP=179;DPB=179;DPRA=0;EPP=204.957;EPPR=189.757;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3709;QR=3433;RO=86;RPL=0;RPP=204.957;RPPR=189.757;RPR=93;RUN=1;SAF=93;SAP=204.957;SAR=0;SRF=86;SRP=189.757;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:82:49,33:49:1940:33:1327:-95.007,0,-150.116 0/1:70:25,45:25:1014:45:1807:-141.767,0,-70.4794 0/1:18:7,11:7:283:11:419:-32.625,0,-20.4248 0/1:9:5,4:5:196:4:156:-11.7057,0,-15.3036 dDocent_Contig_3748 62 . T A 168.984 . AB=0.192308;ABP=45.7716;AC=1;AF=0.125;AN=8;AO=10;CIGAR=1X;DP=113;DPB=113;DPRA=2.55738;EPP=24.725;EPPR=226.672;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.301;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.980583;PAO=0;PQA=0;PQR=0;PRO=0;QA=370;QR=3740;RO=103;RPL=10;RPP=24.725;RPPR=226.672;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=103;SRP=226.672;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:31:31,0:31:1100:0:0:0,-9.33193,-99.2942 0/1:52:42,10:42:1506:10:370:-17.9953,0,-118.395 0/0:13:13,0:13:496:0:0:0,-3.91339,-44.9868 0/0:17:17,0:17:638:0:0:0,-5.11751,-57.753 dDocent_Contig_3749 248 . T A 40.8363 . AB=0.4;ABP=3.44459;AC=1;AF=0.125;AN=8;AO=2;CIGAR=2I2M1X2M1X2M2X2M1X;DP=29;DPB=31.3846;DPRA=0.625;EPP=7.35324;EPPR=59.4686;GTI=0;LEN=1;MEANALT=2;MQM=40;MQMR=57.8846;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.923077;PAO=2;PQA=66;PQR=386;PRO=10;QA=74;QR=1009;RO=26;RPL=2;RPP=7.35324;RPPR=51.1168;RPR=0;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=1;SRP=51.1168;SRR=25;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:9:9,0:9:351:0:0:0,-2.70927,-28.4083 0|0:12:12,0:12:471:0:0:0,-3.61236,-42.4221 0|1:5:2,2:2:80:2:74:-5.17995,0,-6.06117 0|0:3:3,0:3:107:0:0:0,-0.90309,-9.98081 dDocent_Contig_3750 8 . A G 575.32 . AB=0.107914;ABP=188.617;AC=1;AF=0.125;AN=8;AO=15;CIGAR=3M1X7M;DP=171;DPB=171.364;DPRA=0;EPP=35.5824;EPPR=252.73;GTI=0;LEN=1;MEANALT=3.66667;MQM=60;MQMR=60;NS=4;NUMALT=5;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=578;QR=4461;RO=115;RPL=0;RPP=35.5824;RPPR=252.73;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=115;SRP=252.73;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:65:47,0,2,2,11,0:47:1822:0,2,2,11,0:0,80,76,422,0:-20.4966,-34.645,-184.335,-28.0523,-177.745,-177.143,-28.4124,-178.103,-171.512,-177.501,0,-149.698,-143.107,-143.466,-146.387,-34.645,-184.335,-177.745,-178.103,-149.698,-184.335 0|0:52:33,0,0,9,3,7:33:1273:0,0,9,3,7:0,0,342,117,280:-18.1026,-28.0366,-132.571,-28.0366,-132.571,-132.571,0,-104.527,-104.527,-101.818,-18.4187,-122.953,-122.953,-94.9096,-122.05,-4.96558,-109.504,-109.504,-81.4605,-99.8859,-107.397 0|0:32:22,2,3,0,0,5:22:854:2,3,0,0,5:72,117,0,0,199:-9.77136,-10.5311,-80.0933,-6.77596,-71.0782,-76.043,-16.394,-80.6954,-76.9461,-86.5635,-16.394,-80.6954,-76.9461,-86.5635,-86.5635,0,-64.3097,-60.5599,-70.1776,-70.1776,-68.6724 0|0:22:13,0,6,1,1,1:13:512:0,6,1,1,1:0,221,41,39,33:-14.1511,-18.0645,-60.2001,0,-42.1362,-40.33,-14.6756,-56.8148,-38.7509,-56.5138,-14.8562,-56.994,-38.9304,-53.6086,-56.693,-15.4026,-57.5357,-39.4732,-54.1505,-54.3297,-57.2347 dDocent_Contig_3751 43 . T C 38.9895 . AB=0.0989011;ABP=130.173;AC=2;AF=0.25;AN=8;AO=11;CIGAR=1X;DP=300;DPB=300;DPRA=0;EPP=26.8965;EPPR=630.566;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=434;QR=11505;RO=289;RPL=0;RPP=26.8965;RPPR=630.566;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=289;SRP=630.566;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:133:132,1:132:5254:1:41:0,-35.9424,-468.617 0/1:47:42,5:42:1668:5:201:-4.32227,0,-136.206 0/0:76:75,1:75:3005:1:30:0,-19.8787,-267.53 0/1:44:40,4:40:1578:4:162:-1.72164,0,-129.008 dDocent_Contig_3752 23 . C G 144.554 . AB=0.125;ABP=120.27;AC=1;AF=0.125;AN=8;AO=33;CIGAR=1X;DP=670;DPB=670;DPRA=0.860963;EPP=74.6689;EPPR=1386.24;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1341;QR=25562;RO=637;RPL=0;RPP=74.6689;RPPR=1386.24;RPR=33;RUN=1;SAF=33;SAP=74.6689;SAR=0;SRF=637;SRP=1386.24;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:187:187,0:187:7510:0:0:0,-56.2926,-675.491 0/0:259:248,11:248:9950:11:447:0,-37.3807,-854.241 0/0:128:118,10:118:4720:10:404:0,-1.81178,-387.963 0/1:96:84,12:84:3382:12:490:-15.5523,0,-275.519 dDocent_Contig_3753 1 . N G 109.121 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.29832;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=117;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:117:-10.9099,-0.90309,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_3754 1 . N G 77.84 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=4.60517;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:82:-7.77968,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_3755 24 . A T 10023.7 . AB=0.492063;ABP=3.38945;AC=4;AF=0.5;AN=8;AO=341;CIGAR=1X;DP=693;DPB=693;DPRA=0;EPP=743.482;EPPR=767.369;GTI=0;LEN=1;MEANALT=1;MQM=59.9355;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.997067;PAIREDR=0.96875;PAO=0;PQA=0;PQR=0;PRO=0;QA=13513;QR=13980;RO=352;RPL=0;RPP=743.482;RPPR=767.369;RPR=341;RUN=1;SAF=341;SAP=743.482;SAR=0;SRF=352;SRP=767.369;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:249:123,126:123:4908:126:4966:-371.47,0,-366.662 0/1:211:96,115:96:3790:115:4589:-349.411,0,-277.614 0/1:120:56,64:56:2223:64:2554:-193.875,0,-164.125 0/1:113:77,36:77:3059:36:1404:-92.5982,0,-241.39 dDocent_Contig_3756 17 . C T 24267.6 . AB=0.902857;ABP=249.702;AC=7;AF=0.875;AN=8;AO=703;CIGAR=1X;DP=729;DPB=729;DPRA=0;EPP=1529.56;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=27948;QR=1052;RO=26;RPL=0;RPP=1529.56;RPPR=59.4686;RPR=703;RUN=1;SAF=703;SAP=1529.56;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:239:0,239:0:0:239:9485:-853.081,-71.9462,0 1/1:225:3,222:3:123:222:8839:-783.53,-56.267,0 0/1:175:17,158:17:685:158:6277:-511.988,0,-9.29946 1/1:90:6,84:6:244:84:3347:-278.956,-4.75388,0 dDocent_Contig_3757 7 . A C 3789.93 . AB=0.542857;ABP=6.91895;AC=4;AF=0.5;AN=8;AO=133;CIGAR=1X4M;DP=245;DPB=245;DPRA=0;EPP=291.816;EPPR=226.672;GTI=0;LEN=1;MEANALT=2.25;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5060;QR=3912;RO=103;RPL=0;RPP=291.816;RPPR=226.672;RPR=133;RUN=1;SAF=133;SAP=291.816;SAR=0;SRF=103;SRP=226.672;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:84:43,2,39:43:1638:2,39:77,1499:-110.115,-116.737,-250.493,0,-128.034,-122.616 0|1:92:38,2,51:38:1431:2,51:77,1932:-146.947,-152.063,-268.713,0,-110.921,-101.892 0|1:48:18,1,29:18:699:1,29:38,1097:-84.5003,-86.8022,-143.942,0,-54.3291,-48.7153 0|1:21:4,3,14:4:144:3,14:116,532:-42.4197,-34.0944,-44.9343,0,-2.19258,-7.51782 dDocent_Contig_3758 13 . T C 27946.3 . AB=0.872549;ABP=617.835;AC=6;AF=0.75;AN=8;AO=854;CIGAR=1X;DP=951;DPB=951;DPRA=0;EPP=1857.45;EPPR=213.643;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=34050;QR=3737;RO=97;RPL=0;RPP=1857.45;RPPR=213.643;RPR=854;RUN=1;SAF=854;SAP=1857.45;SAR=0;SRF=97;SRP=213.643;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:288:45,243:45:1731:243:9689:-784.71,0,-69.3402 1/1:307:24,283:24:925:283:11271:-930.045,-8.85545,0 0/1:222:20,202:20:767:202:8101:-661.799,0,-2.52145 1/1:134:8,126:8:314:126:4989:-420.263,-11.713,0 dDocent_Contig_3759 192 . C A 188.762 . AB=0.214286;ABP=32.7905;AC=2;AF=0.25;AN=8;AO=9;CIGAR=1X;DP=86;DPB=86;DPRA=0.954545;EPP=22.5536;EPPR=170.214;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=366;QR=3099;RO=77;RPL=9;RPP=22.5536;RPPR=170.214;RPR=0;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=170.214;SRR=77;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:11,6:11:449:6:243:-17.1307,0,-35.6484 0/0:11:11,0:11:438:0:0:0,-3.31133,-39.7753 0/1:25:22,3:22:891:3:123:-3.93904,0,-72.9711 0/0:33:33,0:33:1321:0:0:0,-9.93399,-119.154 dDocent_Contig_3760 72 . C A 45.2792 . AB=0.25;ABP=9.52472;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=60;DPB=60;DPRA=0.75;EPP=9.52472;EPPR=126.784;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=99;QR=1856;RO=57;RPL=3;RPP=9.52472;RPPR=126.784;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:12:12,0:12:380:0:0:0,-3.61236,-34.5047 0/1:12:9,3:9:277:3:99:-5.62482,0,-21.6193 0/0:17:17,0:17:589:0:0:0,-5.11751,-53.3354 0/0:19:19,0:19:610:0:0:0,-5.71957,-55.2052 dDocent_Contig_3761 155 . A C 2095.3 . AB=0.418994;ABP=13.2126;AC=4;AF=0.5;AN=8;AO=75;CIGAR=1X;DP=179;DPB=179;DPRA=0;EPP=165.871;EPPR=228.843;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2968;QR=3767;RO=104;RPL=0;RPP=165.871;RPPR=228.843;RPR=75;RUN=1;SAF=0;SAP=165.871;SAR=75;SRF=0;SRP=228.843;SRR=104;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:63:37,26:37:1364:26:1034:-74.3893,0,-104.081 0/1:52:36,16:36:1286:16:641:-42.3698,0,-100.373 0/1:53:27,26:27:990:26:1021:-76.2275,0,-73.4511 0/1:11:4,7:4:127:7:272:-21.5328,0,-8.42854 dDocent_Contig_3762 20 . A T 2107.45 . AB=0.361502;ABP=38.4981;AC=2;AF=0.25;AN=8;AO=88;CIGAR=1X;DP=363;DPB=363;DPRA=0;EPP=194.1;EPPR=600.165;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.6945;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.992727;PAO=0;PQA=0;PQR=0;PRO=0;QA=3513;QR=10914;RO=275;RPL=0;RPP=194.1;RPPR=600.165;RPR=88;RUN=1;SAF=88;SAP=194.1;SAR=0;SRF=275;SRP=600.165;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:101:94,7:94:3777:7:283:0,-4.56086,-310.216 0/1:104:79,25:79:3131:25:1006:-59.5282,0,-250.563 0/1:109:57,52:57:2232:52:2067:-153.408,0,-168.24 0/0:49:45,4:45:1774:4:157:0,-0.241667,-145.368 dDocent_Contig_3763 77 . C T 249.187 . AB=0.233766;ABP=50.4161;AC=3;AF=0.375;AN=8;AO=18;CIGAR=1X;DP=84;DPB=84;DPRA=3.66667;EPP=42.0968;EPPR=146.327;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=564;QR=2240;RO=66;RPL=18;RPP=42.0968;RPPR=146.327;RPR=0;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=66;SRP=146.327;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:51:39,12:39:1319:12:377:-18.8829,0,-103.654 0/1:11:9,2:9:305:2:60:-2.38764,0,-24.4678 0/1:15:11,4:11:373:4:127:-7.22891,0,-29.3819 0/0:7:7,0:7:243:0:0:0,-2.10721,-22.2088 dDocent_Contig_3764 50 . C A 5154.99 . AB=0.334465;ABP=143.197;AC=4;AF=0.5;AN=8;AO=197;CIGAR=1X;DP=589;DPB=589;DPRA=0;EPP=430.79;EPPR=854.227;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.994898;PAO=0;PQA=0;PQR=0;PRO=0;QA=7744;QR=15389;RO=392;RPL=197;RPP=430.79;RPPR=854.227;RPR=0;RUN=1;SAF=197;SAP=430.79;SAR=0;SRF=392;SRP=854.227;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:170:104,66:104:4106:66:2592:-182.248,0,-318.353 0/1:194:125,69:125:4849:69:2721:-186.627,0,-377.93 0/1:127:93,34:93:3708:34:1338:-82.4553,0,-295.509 0/1:98:70,28:70:2726:28:1093:-69.1584,0,-215.972 dDocent_Contig_3766 98 . N A 95.0174 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=2X;DP=3;DPB=11.5;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=39;MQMR=0;NS=1;NUMALT=1;ODDS=5.29832;PAIRED=0;PAIREDR=0;PAO=3;PQA=101;PQR=0;PRO=0;QA=113;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:3:0,3:0:0:3:113:-9.49957,-0.90309,0 .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. dDocent_Contig_3767 11 . C G 665.193 . AB=0.15625;ABP=265.758;AC=1;AF=0.125;AN=8;AO=73;CIGAR=1X;DP=1067;DPB=1067;DPRA=0;EPP=161.528;EPPR=2161.45;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2926;QR=39612;RO=994;RPL=0;RPP=161.528;RPPR=2161.45;RPR=73;RUN=1;SAF=73;SAP=161.528;SAR=0;SRF=994;SRP=2161.45;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:346:337,9:337:13467:9:352:0,-72.1165,-1178.95 0/0:256:248,8:248:9913:8:325:0,-47.4446,-861.897 0/1:256:216,40:216:8581:40:1605:-67.6162,0,-694.728 0/0:209:193,16:193:7651:16:644:0,-4.6217,-629.906 dDocent_Contig_3768 74 . T C 2579.9 . AB=0.791304;ABP=87.7733;AC=4;AF=0.5;AN=8;AO=91;CIGAR=1X;DP=115;DPB=115;DPRA=0;EPP=123.3;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.835165;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3290;QR=835;RO=23;RPL=91;RPP=200.614;RPPR=52.9542;RPR=0;RUN=1;SAF=81;SAP=123.3;SAR=10;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:45:6,39:6:214:39:1418:-114.365,0,-6.06104 0/1:36:10,26:10:368:26:935:-73.6252,0,-22.6319 0/1:14:2,12:2:73:12:434:-35.1869,0,-2.71688 0/1:20:5,14:5:180:14:503:-39.7974,0,-10.7135 dDocent_Contig_3769 13 . T A 254.112 . AB=0.178218;ABP=93.8466;AC=3;AF=0.375;AN=8;AO=18;CIGAR=1X;DP=127;DPB=127;DPRA=1.29487;EPP=42.0968;EPPR=237.529;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.833333;PAIREDR=0.861111;PAO=0;PQA=0;PQR=0;PRO=0;QA=647;QR=4257;RO=108;RPL=0;RPP=42.0968;RPPR=237.529;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=108;SRP=237.529;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:23,4:23:904:4:116:-2.4731,0,-73.452 0/1:45:35,10:35:1376:10:382:-21.1784,0,-110.559 0/1:28:24,4:24:940:4:149:-5.34243,0,-76.4737 0/0:26:26,0:26:1037:0:0:0,-7.82678,-93.6262 dDocent_Contig_3770 10 . C T 136.086 . AB=0.189189;ABP=34.0565;AC=1;AF=0.125;AN=8;AO=17;CIGAR=1X;DP=449;DPB=449;DPRA=0.835938;EPP=39.9253;EPPR=941.086;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=655;QR=17216;RO=432;RPL=0;RPP=39.9253;RPPR=941.086;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=432;SRP=941.086;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:142:141,1:141:5639:1:41:0,-38.6517,-503.234 0/0:128:128,0:128:5109:0:0:0,-38.5318,-459.685 0/0:142:133,9:133:5279:9:331:0,-12.6234,-444.856 0/1:37:30,7:30:1189:7:283:-14.7055,0,-96.1526 dDocent_Contig_3771 143 . A G 351.578 . AB=0.459459;ABP=3.5385;AC=1;AF=0.125;AN=8;AO=18;CIGAR=1X;DP=107;DPB=107;DPRA=1.05769;EPP=42.0968;EPPR=196.271;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=554;QR=2813;RO=89;RPL=0;RPP=42.0968;RPPR=196.271;RPR=18;RUN=1;SAF=0;SAP=42.0968;SAR=18;SRF=0;SRP=196.271;SRR=89;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:37:20,17:20:618:17:520:-35.9536,0,-44.7776 0/0:43:43,0:43:1362:0:0:0,-12.9443,-122.865 0/0:18:17,1:17:558:1:34:0,-2.01963,-47.1357 0/0:9:9,0:9:275:0:0:0,-2.70927,-25.0495 dDocent_Contig_3772 64 . G C 357.391 . AB=0.342105;ABP=11.239;AC=1;AF=0.125;AN=8;AO=16;CIGAR=1X;DP=173;DPB=173;DPRA=1.21795;EPP=37.7539;EPPR=341.76;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=649;QR=6063;RO=156;RPL=16;RPP=37.7539;RPPR=341.76;RPR=0;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=156;SRP=341.76;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:38:24,13:24:898:13:527:-36.5349,0,-69.8761 0/0:57:54,3:54:2089:3:122:0,-5.78622,-176.811 0/0:65:65,0:65:2545:0:0:0,-19.5669,-229.2 0/0:13:13,0:13:531:0:0:0,-3.91339,-48.1364 dDocent_Contig_3773 27 . A G 1641.73 . AB=0.379747;ABP=22.8559;AC=4;AF=0.5;AN=8;AO=60;CIGAR=1X;DP=158;DPB=158;DPRA=0;EPP=133.299;EPPR=215.815;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.989796;PAO=0;PQA=0;PQR=0;PRO=0;QA=2393;QR=3922;RO=98;RPL=0;RPP=133.299;RPPR=215.815;RPR=60;RUN=1;SAF=60;SAP=133.299;SAR=0;SRF=98;SRP=215.815;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:42:29,13:29:1167:13:520:-34.5026,0,-92.6649 0/1:43:37,6:37:1494:6:242:-9.21215,0,-121.756 0/1:42:22,20:22:858:20:795:-59.226,0,-64.8856 0/1:31:10,21:10:403:21:836:-66.2218,0,-27.2981 dDocent_Contig_3774 34 . A G 3586.11 . AB=0.464419;ABP=5.94626;AC=4;AF=0.5;AN=8;AO=124;CIGAR=1X;DP=267;DPB=267;DPRA=0;EPP=272.273;EPPR=313.531;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4921;QR=5655;RO=143;RPL=0;RPP=272.273;RPPR=313.531;RPR=124;RUN=1;SAF=124;SAP=272.273;SAR=0;SRF=143;SRP=313.531;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:97:49,48:49:1928:48:1918:-143.622,0,-144.517 0/1:94:52,42:52:2067:42:1651:-120.515,0,-157.926 0/1:61:34,27:34:1338:27:1070:-78.2276,0,-102.327 0/1:15:8,7:8:322:7:282:-21.2369,0,-24.8327 dDocent_Contig_3775 19 . T C 7116.73 . AB=0.87747;ABP=316.123;AC=4;AF=0.5;AN=8;AO=222;CIGAR=1X;DP=253;DPB=253;DPRA=0;EPP=485.077;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=8801;QR=1155;RO=31;RPL=0;RPP=485.077;RPPR=70.3259;RPR=222;RUN=1;SAF=222;SAP=485.077;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:74:12,62:12:426:62:2473:-200.442,0,-16.3901 0/1:71:7,64:7:272:64:2547:-207.994,0,-3.4738 0/1:86:8,78:8:306:78:3069:-250.418,0,-2.00919 0/1:22:4,18:4:151:18:712:-57.7817,0,-7.3343 dDocent_Contig_3776 28 . A C 1089.77 . AB=0.0526316;ABP=69.0688;AC=0;AF=0;AN=8;AO=2;CIGAR=7M1X7M;DP=128;DPB=128.133;DPRA=0;EPP=7.35324;EPPR=137.642;GTI=0;LEN=1;MEANALT=6;MQM=60;MQMR=60;NS=4;NUMALT=5;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=2421;RO=62;RPL=0;RPP=7.35324;RPPR=137.642;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:31:12,0,2,12,4,0:12:475:0,2,12,4,0:0,80,467,145,0:-34.7651,-38.3775,-77.4763,-31.7857,-70.8855,-70.2834,0,-39.105,-32.5136,-35.4926,-26.5498,-65.6465,-59.0558,-27.2784,-64.4424,-38.3775,-77.4763,-70.8855,-39.105,-65.6465,-77.4763 0|0:31:13,2,0,4,12,0:13:493:2,0,4,12,0:82,0,164,466,0:-34.3623,-31.5058,-71.3178,-38.2757,-71.9198,-78.6894,-24.7353,-58.3799,-65.15,-63.9459,0,-33.629,-40.3996,-26.8577,-36.7873,-38.2757,-71.9198,-78.6894,-65.15,-40.3996,-78.6894 0|0:38:17,0,0,5,11,2:17:669:0,0,5,11,2:0,0,203,407,82:-28.1653,-33.2828,-88.3239,-33.2828,-88.3239,-88.3239,-16.5311,-71.5783,-71.5783,-70.0732,0,-55.0409,-55.0409,-38.2948,-51.7295,-26.511,-81.5543,-81.5543,-64.8083,-48.271,-80.9523 0|0:28:20,0,1,0,7,0:20:784:0,1,0,7,0:0,41,0,276,0:-16.674,-22.6946,-87.1649,-19.3085,-83.7802,-83.4791,-22.6946,-87.1649,-83.7802,-87.1649,0,-64.4563,-61.0714,-64.4563,-62.3491,-22.6946,-87.1649,-83.7802,-87.1649,-64.4563,-87.1649 dDocent_Contig_3777 26 . T G 295.506 . AB=0.225806;ABP=43.4978;AC=1;AF=0.125;AN=8;AO=20;CIGAR=1X;DP=227;DPB=227;DPRA=0;EPP=46.4397;EPPR=452.505;GTI=0;LEN=1;MEANALT=1;MQM=49.55;MQMR=55.401;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.961353;PAO=0;PQA=0;PQR=0;PRO=0;QA=793;QR=8196;RO=207;RPL=0;RPP=46.4397;RPPR=452.505;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=207;SRP=452.505;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:62:48,14:48:1903:14:547:-30.3465,0,-145.211 0/0:77:74,3:74:2934:3:123:0,-11.8435,-248.479 0/0:47:45,2:45:1757:2:82:0,-6.45625,-147.211 0/0:41:40,1:40:1602:1:41:0,-8.29372,-139.668 dDocent_Contig_3778 148 . C T 6682.54 . AB=0.757042;ABP=165.993;AC=4;AF=0.5;AN=8;AO=215;CIGAR=1X;DP=284;DPB=284;DPRA=0;EPP=469.877;EPPR=152.842;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=8422;QR=2724;RO=69;RPL=0;RPP=469.877;RPPR=152.842;RPR=215;RUN=1;SAF=0;SAP=469.877;SAR=215;SRF=0;SRP=152.842;SRR=69;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:82:20,62:20:790:62:2406:-192.016,0,-46.7355 0/1:79:26,53:26:1045:53:2080:-163.602,0,-70.5596 0/1:85:19,66:19:726:66:2598:-208.378,0,-40.0693 0/1:38:4,34:4:163:34:1338:-109.247,0,-3.61929 dDocent_Contig_3779 1 . N G 292.323 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=8;CIGAR=1X;DP=8;DPB=8;DPRA=0;EPP=20.3821;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=313;QR=0;RO=0;RPL=0;RPP=20.3821;RPPR=0;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:6:0,6:0:0:6:233:-21.3372,-1.80618,0 ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:80:-7.59179,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_3780 107 . N A 726.571 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=25;CIGAR=1X;DP=25;DPB=25;DPRA=0;EPP=57.2971;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=798;QR=0;RO=0;RPL=0;RPP=57.2971;RPPR=0;RPR=25;RUN=1;SAF=0;SAP=57.2971;SAR=25;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:24:0,24:0:0:24:775:-70.0507,-7.22472,0 ./.:.:.:.:.:.:.:. 1/1:1:0,1:0:0:1:23:-2.29991,-0.30103,0 ./.:.:.:.:.:.:.:. dDocent_Contig_3781 12 . G A 362.612 . AB=0.102113;ABP=784.068;AC=2;AF=0.25;AN=8;AO=63;CIGAR=1X;DP=713;DPB=713;DPRA=0;EPP=139.813;EPPR=1412.3;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=2.77556e-17;PAIRED=1;PAIREDR=0.995378;PAO=0;PQA=0;PQR=0;PRO=0;QA=2524;QR=25907;RO=649;RPL=0;RPP=139.813;RPPR=1412.3;RPR=63;RUN=1;SAF=63;SAP=139.813;SAR=0;SRF=649;SRP=1412.3;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:292:257,34:257:10271:34:1363:-34.9314,0,-835.705 0/1:276:252,24:252:10059:24:959:-3.52287,0,-821.567 0/0:96:93,3:93:3728:3:120:0,-17.711,-324.334 0/0:49:47,2:47:1849:2:82:0,-6.97079,-158.832 dDocent_Contig_3782 119 . A T 6178.74 . AB=0.269682;ABP=553.153;AC=4;AF=0.5;AN=8;AO=322;CIGAR=1X;DP=1194;DPB=1194;DPRA=0;EPP=702.224;EPPR=1894.36;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=10903;QR=29758;RO=871;RPL=0;RPP=702.224;RPPR=1894.36;RPR=322;RUN=1;SAF=0;SAP=702.224;SAR=322;SRF=0;SRP=1894.36;SRR=871;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:371:327,43:327:11152:43:1468:-20.7509,0,-891.991 0/1:353:215,138:215:7326:138:4700:-316.924,0,-553.178 0/1:280:194,86:194:6640:86:2844:-171.911,0,-513.434 0/1:190:135,55:135:4640:55:1891:-113.277,0,-360.593 dDocent_Contig_3783 33 . C T 4040.62 . AB=0.546875;ABP=7.89611;AC=4;AF=0.5;AN=8;AO=140;CIGAR=1X;DP=256;DPB=256;DPRA=0;EPP=307.016;EPPR=254.901;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5389;QR=4431;RO=116;RPL=0;RPP=307.016;RPPR=254.901;RPR=140;RUN=1;SAF=140;SAP=307.016;SAR=0;SRF=116;SRP=254.901;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:87:15,72:15:583:72:2794:-225.426,0,-26.6219 0/1:69:58,11:58:2218:11:427:-18.0123,0,-179.054 0/1:64:28,36:28:1076:36:1363:-103.684,0,-77.8774 0/1:36:15,21:15:554:21:805:-61.9286,0,-39.3552 dDocent_Contig_3784 10 . A C 3457.53 . AB=0.333333;ABP=99.2789;AC=4;AF=0.5;AN=8;AO=133;CIGAR=1X;DP=399;DPB=399;DPRA=0;EPP=291.816;EPPR=580.622;GTI=0;LEN=1;MEANALT=1;MQM=59.9248;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.992481;PAIREDR=0.996241;PAO=0;PQA=0;PQR=0;PRO=0;QA=5220;QR=10608;RO=266;RPL=0;RPP=291.816;RPPR=580.622;RPR=133;RUN=1;SAF=133;SAP=291.816;SAR=0;SRF=266;SRP=580.622;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:133:88,45:88:3513:45:1761:-118.655,0,-276.175 0/1:141:89,52:89:3516:52:2027:-140.185,0,-274.031 0/1:93:68,25:68:2733:25:1001:-62.3929,0,-218.082 0/1:32:21,11:21:846:11:431:-29.5089,0,-66.8195 dDocent_Contig_3785 108 . A T 372.865 . AB=0.231481;ABP=70.6476;AC=3;AF=0.375;AN=8;AO=25;CIGAR=1X;DP=120;DPB=120;DPRA=3;EPP=57.2971;EPPR=209.3;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=805;QR=3301;RO=95;RPL=0;RPP=57.2971;RPPR=209.3;RPR=25;RUN=1;SAF=0;SAP=57.2971;SAR=25;SRF=0;SRP=209.3;SRR=95;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:31,5:31:1075:5:170:-4.79791,0,-86.2233 0/1:26:22,4:22:768:4:117:-2.99318,0,-61.6155 0/1:46:30,16:30:1040:16:518:-33.0844,0,-80.0641 0/0:12:12,0:12:418:0:0:0,-3.61236,-37.9539 dDocent_Contig_3786 16 . T G 1812.56 . AB=0.044843;ABP=404.285;AC=4;AF=0.5;AN=8;AO=10;CIGAR=2X;DP=285;DPB=285;DPRA=0;EPP=24.725;EPPR=435.133;GTI=0;LEN=1;MEANALT=2;MQM=38.4;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.994975;PAO=0;PQA=0;PQR=0;PRO=0;QA=376;QR=7973;RO=199;RPL=0;RPP=24.725;RPPR=435.133;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=199;SRP=435.133;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:112:94,12,6:94:3792:12,6:475,236:-10.9014,0,-309.116,-28.1655,-301.654,-338.94 0|1:75:47,25,3:47:1867:25,3:994,100:-64.149,0,-146.228,-70.2127,-145.668,-223.014 0|1:62:34,28,0:34:1366:28,0:1126,0:-82.8999,0,-104.528,-93.135,-112.956,-205.69 0|1:36:24,11,1:24:948:11,1:432,40:-28.2956,0,-74.6833,-32.2246,-74.6993,-109.925 dDocent_Contig_3787 69 . T A 6516.1 . AB=0.456835;ABP=12.0086;AC=4;AF=0.5;AN=8;AO=254;CIGAR=1X;DP=556;DPB=556;DPRA=0;EPP=554.564;EPPR=658.795;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=9144;QR=10938;RO=302;RPL=254;RPP=554.564;RPPR=658.795;RPR=0;RUN=1;SAF=254;SAP=554.564;SAR=0;SRF=302;SRP=658.795;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:163:86,77:86:3108:77:2778:-201.182,0,-230.863 0/1:156:98,58:98:3544:58:2100:-142.299,0,-272.191 0/1:169:97,72:97:3524:72:2583:-181.837,0,-266.476 0/1:68:21,47:21:762:47:1683:-131.281,0,-48.4349 dDocent_Contig_3788 20 . C A 48.1641 . AB=0.107692;ABP=89.9026;AC=1;AF=0.125;AN=8;AO=36;CIGAR=1X;DP=484;DPB=484;DPRA=0;EPP=81.1833;EPPR=975.83;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1397;QR=17773;RO=448;RPL=0;RPP=81.1833;RPPR=975.83;RPR=36;RUN=1;SAF=36;SAP=81.1833;SAR=0;SRF=448;SRP=975.83;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:164:150,14:150:5957:14:520:0,-2.23759,-488.8 0/0:158:149,9:149:5941:9:361:0,-14.7103,-501.612 0/0:97:91,6:91:3597:6:237:0,-7.49789,-302.051 0/1:65:58,7:58:2278:7:279:-5.91329,0,-185.627 dDocent_Contig_3789 28 . A G 4580.82 . AB=0.637681;ABP=14.3712;AC=6;AF=0.75;AN=8;AO=136;CIGAR=1X;DP=161;DPB=161;DPRA=0;EPP=298.331;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5334;QR=1000;RO=25;RPL=0;RPP=298.331;RPPR=57.2971;RPR=136;RUN=1;SAF=136;SAP=298.331;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:39:9,30:9:349:30:1205:-96.9849,0,-20.0235 1/1:82:0,82:0:0:82:3231:-290.841,-24.6845,0 1/1:10:0,10:0:0:10:367:-33.3615,-3.0103,0 0/1:30:16,14:16:651:14:531:-39.088,0,-49.8922 dDocent_Contig_3791 27 . T C 54.6724 . AB=0.148148;ABP=32.0437;AC=1;AF=0.125;AN=8;AO=6;CIGAR=2X;DP=158;DPB=158;DPRA=1.43077;EPP=16.0391;EPPR=333.074;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=238;QR=6015;RO=152;RPL=0;RPP=16.0391;RPPR=333.074;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=152;SRP=333.074;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:66:64,2:64:2543:2:79:0,-12.3707,-221.509 0|0:42:42,0:42:1626:0:0:0,-12.6433,-146.565 0|1:27:23,4:23:925:4:159:-6.56414,0,-75.4239 0|0:23:23,0:23:921:0:0:0,-6.92369,-83.195 dDocent_Contig_3792 212 . C G 55.5296 . AB=0.25;ABP=9.52472;AC=1;AF=0.125;AN=8;AO=3;CIGAR=10I3M2X;DP=24;DPB=31;DPRA=3;EPP=9.52472;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=110;QR=767;RO=20;RPL=3;RPP=9.52472;RPPR=46.4397;RPR=0;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=46.4397;SRR=20;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:5:5,0:5:188:0:0:0,-1.50515,-17.2834 0|1:12:9,3:9:354:3:110:-6.64864,0,-28.6101 0|0:4:3,0:3:108:0:0:0,-0.90309,-9.69218 0|0:3:3,0:3:117:0:0:0,-0.90309,-10.9104 dDocent_Contig_3794 14 . G A 8404.09 . AB=0.0638889;ABP=597.728;AC=4;AF=0.5;AN=8;AO=23;CIGAR=1X1M;DP=558;DPB=558;DPRA=0;EPP=52.9542;EPPR=320.045;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=0.986301;PAO=0;PQA=0;PQR=0;PRO=0;QA=930;QR=5631;RO=146;RPL=0;RPP=52.9542;RPPR=320.045;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=146;SRP=320.045;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:177:47,58,51,21:47:1802:58,51,21:2323,2066,849:-199.688,-22.4883,-152.906,-43.4754,0,-176.002,-143.839,-100.367,-121.356,-285.397 1|0:183:35,89,57,2:35:1346:89,57,2:3570,2273,81:-360.196,-76.6953,-160.392,-183.558,0,-276.888,-364.053,-180.504,-287.367,-473.942 0|1:115:45,46,24,0:45:1751:46,24,0:1852,973,0:-138.8,0,-130.036,-72.1063,-63.639,-208.769,-152.346,-143.883,-215.994,-296.234 0|1:83:19,46,18,0:19:732:46,18,0:1850,717,0:-146.706,0,-46.2479,-93.3872,-1.04956,-148.066,-152.425,-60.0952,-153.484,-212.524 dDocent_Contig_3795 14 . C T 1783.05 . AB=0.320755;ABP=62.1727;AC=4;AF=0.5;AN=8;AO=68;CIGAR=1X;DP=212;DPB=212;DPRA=0;EPP=150.67;EPPR=315.702;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.986111;PAO=0;PQA=0;PQR=0;PRO=0;QA=2731;QR=5737;RO=144;RPL=0;RPP=150.67;RPPR=315.702;RPR=68;RUN=1;SAF=68;SAP=150.67;SAR=0;SRF=144;SRP=315.702;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:84:53,31:53:2123:31:1231:-85.7767,0,-165.958 0/1:65:55,10:55:2201:10:407:-17.4236,0,-178.698 0/1:36:20,16:20:789:16:647:-47.7264,0,-60.4858 0/1:27:16,11:16:624:11:446:-32.3678,0,-48.3634 dDocent_Contig_3796 209 . N G 244.284 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=7;CIGAR=1X;DP=7;DPB=7;DPRA=0;EPP=18.2106;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=40;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=282;QR=0;RO=0;RPL=7;RPP=18.2106;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:121:-10.4012,-0.90309,0 1/1:4:0,4:0:0:4:161:-13.7245,-1.20412,0 ./.:.:.:.:.:.:.:. dDocent_Contig_3797 10 . T A 37106.2 . AB=0.701723;ABP=597.863;AC=4;AF=0.5;AN=8;AO=1181;CIGAR=1X;DP=1683;DPB=1683;DPRA=0;EPP=2280.7;EPPR=894.594;GTI=0;LEN=1;MEANALT=1;MQM=58.9644;MQMR=58.5159;NS=4;NUMALT=1;ODDS=0;PAIRED=0.943268;PAIREDR=0.910359;PAO=0;PQA=0;PQR=0;PRO=0;QA=47162;QR=19846;RO=502;RPL=0;RPP=2567.52;RPPR=1093.09;RPR=1181;RUN=1;SAF=1147;SAP=2280.7;SAR=34;SRF=478;SRP=894.594;SRR=24;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:670:182,488:182:7184:488:19493:-1546.31,0,-437.563 0/1:642:222,420:222:8786:420:16852:-1312.74,0,-586.592 0/1:259:77,182:77:3046:182:7183:-564.071,0,-194.54 0/1:112:21,91:21:830:91:3634:-292.493,0,-41.2942 dDocent_Contig_3799 22 . C A 4300.57 . AB=0.0345168;ABP=1911.37;AC=0;AF=0;AN=8;AO=35;CIGAR=2X2M1D1M1X;DP=1014;DPB=1005.71;DPRA=0;EPP=79.0118;EPPR=1455.73;GTI=0;LEN=1;MEANALT=6.25;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1365;QR=25888;RO=669;RPL=0;RPP=79.0118;RPPR=1455.73;RPR=35;RUN=1;SAF=35;SAP=79.0118;SAR=0;SRF=669;SRP=1455.73;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:309:213,17,41,28:213:8226:17,41,28:670,1631,1109:-70.1736,-79.1694,-749.577,0,-620.403,-663.184,-43.0222,-663.424,-584.256,-710.119 0|0:318:232,12,14,51:232:8985:12,14,51:464,564,2039:-98.1128,-129.844,-864.283,-121.464,-821.408,-855.303,0,-699.944,-691.566,-722.701 0|0:240:130,4,25,71:130:5067:4,25,71:153,985,2846:-195.339,-221.919,-637.179,-153.446,-557.354,-562.383,0,-403.912,-335.438,-395.094 0|0:147:94,2,17,31:94:3610:2,17,31:78,679,1213:-71.4212,-93.3066,-388.998,-43.7922,-333.675,-334.969,0,-289.877,-240.363,-286.956 dDocent_Contig_3800 177 . G A 60.6817 . AB=0.16;ABP=28.1125;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=179;DPB=179;DPRA=0.487013;EPP=11.6962;EPPR=383.018;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=159;QR=6901;RO=175;RPL=4;RPP=11.6962;RPPR=383.018;RPR=0;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=383.018;SRR=175;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:54:54,0:54:2131:0:0:0,-16.2556,-191.972 0/0:76:76,0:76:2985:0:0:0,-22.8783,-268.76 0/0:24:24,0:24:942:0:0:0,-7.22472,-85.0814 0/1:25:21,4:21:843:4:159:-7.16508,0,-68.6547 dDocent_Contig_3801 41 . G C 2409.37 . AB=0.352941;ABP=50.9104;AC=4;AF=0.5;AN=8;AO=90;CIGAR=1X;DP=255;DPB=255;DPRA=0;EPP=189.853;EPPR=359.132;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3573;QR=6382;RO=164;RPL=1;RPP=189.853;RPPR=359.132;RPR=89;RUN=1;SAF=90;SAP=198.443;SAR=0;SRF=164;SRP=359.132;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:64:39,24:39:1504:24:957:-67.0646,0,-116.24 0/1:96:70,26:70:2717:26:1030:-64.0921,0,-215.761 0/1:59:43,16:43:1698:16:641:-40.2644,0,-135.286 0/1:36:12,24:12:463:24:945:-74.5055,0,-31.1744 dDocent_Contig_3802 25 . A G 294.841 . AB=0.526316;ABP=3.12459;AC=1;AF=0.125;AN=8;AO=11;CIGAR=1X3M1X;DP=50;DPB=50;DPRA=2.33333;EPP=26.8965;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=436;QR=1469;RO=38;RPL=0;RPP=26.8965;RPPR=85.5263;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:19:9,10:9:346:10:396:-30.2793,0,-25.7788 0|0:8:7,0:7:269:0:0:0,-2.10721,-24.1755 0|0:16:15,1:15:580:1:40:0,-0.820801,-48.5444 0|0:7:7,0:7:274:0:0:0,-2.10721,-25.028 dDocent_Contig_3804 11 . A T 4289.79 . AB=0.646512;ABP=43.0967;AC=4;AF=0.5;AN=8;AO=139;CIGAR=1X;DP=215;DPB=215;DPRA=0;EPP=304.845;EPPR=168.042;GTI=0;LEN=1;MEANALT=1;MQM=59.4101;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.985612;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5571;QR=3060;RO=76;RPL=0;RPP=304.845;RPPR=168.042;RPR=139;RUN=1;SAF=139;SAP=304.845;SAR=0;SRF=76;SRP=168.042;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:105:26,79:26:1056:79:3173:-250.332,0,-63.7198 0/1:66:34,32:34:1377:32:1297:-97.1229,0,-104.314 0/1:23:10,13:10:385:13:495:-37.9578,0,-28.0795 0/1:21:6,15:6:242:15:606:-48.5559,0,-15.8359 dDocent_Contig_3805 48 . G A 409.646 . AB=0.184874;ABP=105.653;AC=1;AF=0.125;AN=8;AO=25;CIGAR=1X;DP=322;DPB=322;DPRA=1.14667;EPP=57.2971;EPPR=639.281;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.9832;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=985;QR=11846;RO=297;RPL=0;RPP=57.2971;RPPR=639.281;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=297;SRP=647.938;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:107:107,0:107:4256:0:0:0,-32.2102,-383.004 0/1:119:97,22:97:3888:22:862:-42.0615,0,-314.095 0/0:53:50,3:50:1969:3:123:0,-4.4898,-165.936 0/0:43:43,0:43:1733:0:0:0,-12.9443,-156.188 dDocent_Contig_3807 1 . N G 1151.99 . AB=0.4;ABP=3.44459;AC=8;AF=1;AN=8;AO=32;CIGAR=1X4M;DP=35;DPB=35;DPRA=0;EPP=72.4974;EPPR=0;GTI=0;LEN=1;MEANALT=1.25;MQM=59.75;MQMR=0;NS=4;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1182;QR=0;RO=0;RPL=0;RPP=72.4974;RPPR=0;RPR=32;RUN=1;SAF=0;SAP=72.4974;SAR=32;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:10:0,0,10:0:0:0,10:0,368:-33.4691,-33.4691,-33.4691,-3.0103,-3.0103,0 1|1:10:0,0,10:0:0:0,10:0,370:-33.6456,-33.6456,-33.6456,-3.0103,-3.0103,0 1|1:10:0,0,10:0:0:0,10:0,370:-33.6502,-33.6502,-33.6502,-3.0103,-3.0103,0 1|1:5:0,3,2:0:0:3,2:108,74:-15.2301,-6.42382,-5.52073,-9.17208,0,-8.57002 dDocent_Contig_3808 17 . A G 4757.22 . AB=0.577465;ABP=17.813;AC=4;AF=0.5;AN=8;AO=164;CIGAR=1X3M1X;DP=284;DPB=284;DPRA=0;EPP=359.132;EPPR=259.244;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=0.993902;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6281;QR=4594;RO=118;RPL=0;RPP=359.132;RPPR=259.244;RPR=164;RUN=1;SAF=164;SAP=359.132;SAR=0;SRF=118;SRP=259.244;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:55:24,31:24:936:31:1189:-90.7469,0,-67.9949 0|1:90:47,42:47:1832:42:1604:-117.494,0,-137.989 0|1:75:17,58:17:667:58:2206:-176.178,0,-37.7875 0|1:64:30,33:30:1159:33:1282:-96.2925,0,-85.228 dDocent_Contig_3809 28 . C T 6331.85 . AB=0.691781;ABP=96.2944;AC=4;AF=0.5;AN=8;AO=202;CIGAR=1X;DP=292;DPB=292;DPRA=0;EPP=441.648;EPPR=198.443;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=8059;QR=3602;RO=90;RPL=0;RPP=441.648;RPPR=198.443;RPR=202;RUN=1;SAF=202;SAP=441.648;SAR=0;SRF=90;SRP=198.443;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:110:38,72:38:1518:72:2876:-225.827,0,-103.748 0/1:85:18,67:18:731:67:2675:-215.287,0,-40.5258 0/1:57:21,36:21:831:36:1421:-110.985,0,-57.9419 0/1:40:13,27:13:522:27:1087:-86.0759,0,-35.2854 dDocent_Contig_3810 11 . G A 289.041 . AB=0.0810811;ABP=115.809;AC=0;AF=0;AN=8;AO=6;CIGAR=1X2M1X3M1X5M;DP=130;DPB=130;DPRA=0;EPP=16.0391;EPPR=213.643;GTI=0;LEN=1;MEANALT=2.5;MQM=55.3333;MQMR=60;NS=4;NUMALT=4;ODDS=0;PAIRED=0.333333;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=238;QR=3787;RO=97;RPL=0;RPP=16.0391;RPPR=213.643;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=97;SRP=213.643;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:30:25,0,0,0,4:25:968:0,0,0,4:0,0,0,163:-6.16716,-13.6929,-93.2425,-13.6929,-93.2425,-93.2425,-13.6929,-93.2425,-93.2425,-93.2425,0,-79.7911,-79.7911,-79.7911,-78.5869 0|0:45:37,0,4,0,4:37:1452:0,4,0,4:0,158,0,162:-2.22573,-13.3638,-132.774,-0.423181,-119.828,-118.624,-13.3638,-132.774,-119.828,-132.774,0,-119.415,-106.469,-119.415,-118.211 0|0:29:21,0,2,2,4:21:820:0,2,2,4:0,80,75,161:-6.95494,-13.2766,-80.6821,-6.68474,-74.0914,-73.4893,-7.14037,-74.5406,-67.9498,-73.9385,0,-67.4113,-60.8203,-61.2698,-66.2072 0|0:26:14,2,0,2,7:14:547:2,0,2,7:79,0,78,276:-18.4923,-16.2058,-60.5699,-22.7067,-61.172,-67.6731,-16.2961,-54.7606,-61.2618,-60.6597,0,-38.4635,-44.9648,-38.5535,-42.8576 dDocent_Contig_3811 79 . G A 10136 . AB=0.868687;ABP=236.784;AC=6;AF=0.75;AN=8;AO=351;CIGAR=1X;DP=379;DPB=379;DPRA=0;EPP=765.197;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=11981;QR=919;RO=27;RPL=351;RPP=765.197;RPPR=61.6401;RPR=0;RUN=1;SAF=351;SAP=765.197;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:134:0,133:0:0:133:4572:-411.313,-40.037,0 0/1:114:13,101:13:435:101:3478:-278.932,0,-5.15453 0/1:84:13,71:13:449:71:2374:-188.632,0,-15.4541 1/1:47:1,46:1:35:46:1557:-136.92,-10.6498,0 dDocent_Contig_3813 10 . A T 77.5984 . AB=0.102804;ABP=149.635;AC=1;AF=0.125;AN=8;AO=16;CIGAR=1X;DP=314;DPB=314;DPRA=0;EPP=37.7539;EPPR=650.109;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=653;QR=11899;RO=298;RPL=0;RPP=37.7539;RPPR=650.109;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=298;SRP=650.109;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:107:96,11:96:3847:11:449:-8.55567,0,-314.009 0/0:120:119,1:119:4772:1:41:0,-32.029,-425.275 0/0:55:53,2:53:2074:2:82:0,-8.77697,-179.061 0/0:32:30,2:30:1206:2:81:0,-1.94723,-101.128 dDocent_Contig_3814 7 . T C 1875.04 . AB=0.675325;ABP=23.5688;AC=5;AF=0.625;AN=8;AO=61;CIGAR=2M1X;DP=86;DPB=84.6667;DPRA=0;EPP=135.47;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2356;QR=811;RO=21;RPL=0;RPP=135.47;RPPR=48.6112;RPR=61;RUN=1;SAF=61;SAP=135.47;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:13:3,0,10:3:117:0,10:0,389:-31.455,-32.3581,-41.9759,0,-10.0073,-6.99699 0|1:27:9,1,17:9:347:1,17:18,650:-50.8556,-52.6268,-80.8222,0,-27.7898,-23.5993 0|1:37:9,3,25:9:347:3,25:94,969:-77.1049,-76.4583,-104.05,0,-25.3413,-21.1393 1|1:9:0,0,9:0:0:0,9:0,348:-31.6803,-31.6803,-31.6803,-2.70927,-2.70927,0 dDocent_Contig_3815 55 . T A 200.254 . AB=0.157895;ABP=60.9543;AC=1;AF=0.125;AN=8;AO=10;CIGAR=2M1X1M;DP=313;DPB=322;DPRA=0.791209;EPP=24.725;EPPR=589.308;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=361;QR=10595;RO=270;RPL=10;RPP=24.725;RPPR=589.308;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=270;SRP=589.308;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:87:79,7,1,0:79:3108:7,1,0:199,8,0:0,-7.81071,-261.665,-23.3879,-263.358,-278.84,-23.7814,-263.773,-279.141,-279.556 0|0:91:82,2,0,7:82:3248:2,0,7:82,0,281:0,-17.9144,-284.642,-24.6845,-285.244,-292.012,-1.53669,-262.089,-268.858,-266.75 0|0:78:67,3,0,8:67:2619:3,0,8:118,0,316:-5.83513,-16.2981,-230.706,-26.0041,-231.609,-241.315,0,-205.605,-215.312,-212.904 0|1:57:42,6,9,0:42:1620:6,9,0:236,353,0:-16.3839,-9.61461,-140.821,0,-113.598,-130.302,-29.0272,-142.627,-133.012,-162.04 dDocent_Contig_3816 63 . G T 229.817 . AB=0.5;ABP=3.0103;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=67;DPB=67;DPRA=0.941176;EPP=20.3821;EPPR=131.127;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=317;QR=2264;RO=59;RPL=8;RPP=20.3821;RPPR=131.127;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=59;SRP=131.127;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:6:6,0:6:219:0:0:0,-1.80618,-20.0612 0/1:16:8,8:8:298:8:317:-24.0785,0,-22.3494 0/0:32:32,0:32:1238:0:0:0,-9.63296,-111.686 0/0:13:13,0:13:509:0:0:0,-3.91339,-46.1512 dDocent_Contig_3817 39 . G A 7614.56 . AB=0.806667;ABP=248.068;AC=4;AF=0.5;AN=8;AO=242;CIGAR=1X;DP=300;DPB=300;DPRA=0;EPP=528.507;EPPR=126.784;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=9510;QR=2287;RO=57;RPL=0;RPP=528.507;RPPR=126.784;RPR=242;RUN=1;SAF=242;SAP=528.507;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:102:11,91:11:440:91:3596:-292.974,0,-9.25008 0/1:87:18,68:18:727:68:2706:-217.695,0,-39.7697 0/1:64:18,46:18:723:46:1762:-139.528,0,-46.1288 0/1:47:10,37:10:397:37:1446:-116.249,0,-21.9393 dDocent_Contig_3818 12 . A T 43834 . AB=0.622123;ABP=351.997;AC=4;AF=0.5;AN=8;AO=1676;CIGAR=1X;DP=2694;DPB=2694;DPRA=0;EPP=3581.85;EPPR=2209.23;GTI=0;LEN=1;MEANALT=1.25;MQM=48.4302;MQMR=54.6585;NS=4;NUMALT=1;ODDS=0;PAIRED=0.108592;PAIREDR=0.0610236;PAO=0;PQA=0;PQR=0;PRO=0;QA=66842;QR=38549;RO=1016;RPL=0;RPP=3642.4;RPPR=2209.23;RPR=1676;RUN=1;SAF=1669;SAP=3581.85;SAR=7;SRF=1016;SRP=2209.23;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:833:327,506:327:12320:506:20194:-1328.12,0,-803.988 0/1:785:292,493:292:10991:493:19659:-1346.26,0,-700.019 0/1:785:293,490:293:11246:490:19545:-1225.36,0,-711.332 0/1:291:104,187:104:3992:187:7444:-488.656,0,-259.898 dDocent_Contig_3819 61 . T A 4354.19 . AB=0.317254;ABP=159.36;AC=4;AF=0.5;AN=8;AO=171;CIGAR=1X;DP=539;DPB=539;DPRA=0;EPP=374.332;EPPR=802.112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6686;QR=14572;RO=368;RPL=171;RPP=374.332;RPPR=802.112;RPR=0;RUN=1;SAF=171;SAP=374.332;SAR=0;SRF=368;SRP=802.112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:194:108,86:108:4286:86:3321:-240.556,0,-327.304 0/1:220:170,50:170:6726:50:1965:-110.827,0,-538.82 0/1:62:44,18:44:1714:18:728:-47.1815,0,-135.82 0/1:63:46,17:46:1846:17:672:-41.8438,0,-147.384 dDocent_Contig_3820 11 . A T 83.2929 . AB=0.101351;ABP=207.305;AC=3;AF=0.375;AN=8;AO=15;CIGAR=1X;DP=175;DPB=175;DPRA=1.82716;EPP=35.5824;EPPR=350.446;GTI=0;LEN=1;MEANALT=1;MQM=58.5333;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.666667;PAIREDR=0.9875;PAO=0;PQA=0;PQR=0;PRO=0;QA=601;QR=6187;RO=160;RPL=0;RPP=35.5824;RPPR=350.446;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=160;SRP=350.446;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:39:34,5:34:1285:5:194:-6.08836,0,-104.169 0/1:59:53,6:53:2051:6:244:-4.43026,0,-167.016 0/1:50:46,4:46:1795:4:163:-0.00692765,0,-146.726 0/0:27:27,0:27:1056:0:0:0,-8.12781,-95.3265 dDocent_Contig_3821 70 . C T 1958.91 . AB=0.653846;ABP=24.391;AC=4;AF=0.5;AN=8;AO=68;CIGAR=1X;DP=104;DPB=104;DPRA=0;EPP=150.67;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2565;QR=1376;RO=36;RPL=68;RPP=150.67;RPPR=81.1833;RPR=0;RUN=1;SAF=68;SAP=150.67;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:39:13,26:13:507:26:988:-77.491,0,-34.2393 0/1:25:7,18:7:263:18:685:-54.4577,0,-16.5023 0/1:27:11,16:11:415:16:582:-44.5819,0,-29.5709 0/1:13:5,8:5:191:8:310:-24.3502,0,-13.6451 dDocent_Contig_3822 15 . T C 160.353 . AB=0.0931315;ABP=1238.15;AC=1;AF=0.125;AN=8;AO=199;CIGAR=1X;DP=3317;DPB=3317;DPRA=0;EPP=435.133;EPPR=6771.49;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=59.9528;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.999679;PAO=0;PQA=0;PQR=0;PRO=0;QA=7661;QR=113589;RO=3117;RPL=0;RPP=435.133;RPPR=6771.49;RPR=199;RUN=1;SAF=199;SAP=435.133;SAR=0;SRF=3117;SRP=6771.49;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:999:969,30:969:35389:30:1186:0,-193.708,-3076.12 0/0:1046:972,74:972:35563:74:2841:0,-59.0594,-2943.04 0/1:859:778,80:778:28206:80:3060:-17.1322,0,-2278.84 0/0:413:398,15:398:14431:15:574:0,-72.3317,-1246.28 dDocent_Contig_3823 38 . T C 284.588 . AB=0.434783;ABP=3.86001;AC=1;AF=0.125;AN=8;AO=10;CIGAR=1X;DP=93;DPB=93;DPRA=0.985714;EPP=24.725;EPPR=183.243;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.987952;PAO=0;PQA=0;PQR=0;PRO=0;QA=398;QR=3343;RO=83;RPL=0;RPP=24.725;RPPR=183.243;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=83;SRP=183.243;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:13,10:13:524:10:398:-29.2547,0,-40.5836 0/0:36:36,0:36:1436:0:0:0,-10.8371,-129.489 0/0:23:23,0:23:935:0:0:0,-6.92369,-84.4508 0/0:11:11,0:11:448:0:0:0,-3.31133,-40.676 dDocent_Contig_3824 17 . C T 301.111 . AB=0.233333;ABP=40.0701;AC=2;AF=0.25;AN=8;AO=14;CIGAR=3X2M1X;DP=90;DPB=90;DPRA=2;EPP=33.4109;EPPR=165.871;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.92;PAO=0;PQA=0;PQR=0;PRO=0;QA=551;QR=2931;RO=75;RPL=0;RPP=33.4109;RPPR=165.871;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=75;SRP=165.871;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:40:33,6:33:1281:6:236:-9.60994,0,-103.583 0|1:20:12,8:12:470:8:315:-22.695,0,-36.6294 0|0:12:12,0:12:470:0:0:0,-3.61236,-42.6499 0|0:18:18,0:18:710:0:0:0,-5.41854,-64.2297 dDocent_Contig_3825 10 . A C 203.518 . AB=0.235294;ABP=34.0496;AC=2;AF=0.25;AN=8;AO=13;CIGAR=1X;DP=97;DPB=97;DPRA=1.28333;EPP=31.2394;EPPR=152.325;GTI=0;LEN=1;MEANALT=1;MQM=33.7692;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.702381;PAO=0;PQA=0;PQR=0;PRO=0;QA=519;QR=3372;RO=84;RPL=0;RPP=31.2394;RPPR=185.414;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=80;SRP=152.325;SRR=4;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:20,5:20:804:5:202:-8.41312,0,-65.1513 0/1:26:19,7:19:763:7:276:-14.1325,0,-61.1609 0/0:26:25,1:25:997:1:41:0,-7.12692,-89.3263 0/0:20:20,0:20:808:0:0:0,-6.0206,-73.0364 dDocent_Contig_3827 26 . G C 198.558 . AB=0.1875;ABP=16.582;AC=3;AF=0.5;AN=6;AO=7;CIGAR=1X;DP=31;DPB=31;DPRA=0.909091;EPP=18.2106;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=276;QR=892;RO=24;RPL=0;RPP=18.2106;RPPR=55.1256;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 0/0:11:11,0:11:411:0:0:0,-3.31133,-37.329 0/1:16:13,3:13:481:3:112:-5.62631,0,-38.8032 1/1:4:0,4:0:0:4:164:-15.1499,-1.20412,0 dDocent_Contig_3828 17 . T A 8056.78 . AB=0.436817;ABP=25.2366;AC=4;AF=0.5;AN=8;AO=280;CIGAR=1X2M1X;DP=641;DPB=641;DPRA=0;EPP=611.023;EPPR=778.226;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.996429;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=11146;QR=14198;RO=357;RPL=0;RPP=611.023;RPPR=778.226;RPR=280;RUN=1;SAF=280;SAP=611.023;SAR=0;SRF=357;SRP=778.226;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:187:117,69:117:4679:69:2764:-192.48,0,-364.631 0|1:191:102,87:102:4043:87:3446:-252.91,0,-306.581 0|1:160:71,88:71:2829:88:3508:-267.506,0,-206.464 0|1:103:67,36:67:2647:36:1428:-97.7714,0,-207.363 dDocent_Contig_3829 64 . A G 187.222 . AB=0.204545;ABP=36.372;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X;DP=106;DPB=106;DPRA=2.12903;EPP=22.5536;EPPR=213.643;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=360;QR=3847;RO=97;RPL=9;RPP=22.5536;RPPR=213.643;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=97;SRP=213.643;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:44:35,9:35:1377:9:360:-19.5181,0,-110.947 0/0:27:27,0:27:1079:0:0:0,-8.12781,-97.3985 0/0:19:19,0:19:752:0:0:0,-5.71957,-68.0035 0/0:16:16,0:16:639:0:0:0,-4.81648,-57.8454 dDocent_Contig_3830 8 . A C 3886.53 . AB=0.646766;ABP=40.6167;AC=4;AF=0.5;AN=8;AO=130;CIGAR=1M1D1X5M;DP=201;DPB=183.375;DPRA=0;EPP=285.302;EPPR=133.299;GTI=0;LEN=1;MEANALT=2.25;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5013;QR=2327;RO=60;RPL=0;RPP=285.302;RPPR=133.299;RPR=130;RUN=1;SAF=130;SAP=285.302;SAR=0;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:60:21,37,1:21:821:37,1:1434,39:-111.484,0,-56.3599,-114.599,-64.2922,-181.801 0|1:51:15,31,5:15:578:31,5:1189,190:-93.0791,0,-38.1335,-82.0127,-31.8844,-127.97 0|1:65:19,43,3:19:732:43,3:1654,103:-130.114,0,-47.1975,-127.472,-51.7838,-186.675 0|1:25:5,19,1:5:196:19,1:736,38:-58.9665,0,-10.4089,-57.3555,-13.014,-73.174 dDocent_Contig_3831 8 . A C 32.013 . AB=0.2;ABP=10.8276;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=110;DPB=110;DPRA=0.833333;EPP=11.6962;EPPR=231.015;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=156;QR=3998;RO=105;RPL=0;RPP=11.6962;RPPR=231.015;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=105;SRP=231.015;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:30:30,0:30:1141:0:0:0,-9.0309,-102.99 0/0:30:30,0:30:1142:0:0:0,-9.0309,-103.08 0/0:40:38,2:38:1450:2:78:0,-4.63773,-123.374 0/1:10:7,2:7:265:2:78:-4.29794,0,-21.1042 dDocent_Contig_3832 1 . N G 77.84 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=4.60517;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:82:-7.77968,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_3833 1 . N G 75.9611 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=4.60517;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=80;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:80:-7.59179,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_3834 25 . T C 3515.64 . AB=0.664706;ABP=43.0676;AC=4;AF=0.5;AN=8;AO=113;CIGAR=1X;DP=170;DPB=170;DPRA=0;EPP=248.387;EPPR=126.784;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.964602;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4518;QR=2269;RO=57;RPL=0;RPP=248.387;RPPR=126.784;RPR=113;RUN=1;SAF=113;SAP=248.387;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:45:24,21:24:950:21:839:-62.2738,0,-72.2492 0/1:35:14,21:14:571:21:841:-65.4637,0,-41.1958 0/1:51:12,39:12:466:39:1578:-126.9,0,-26.9322 0/1:39:7,32:7:282:32:1260:-101.917,0,-14.0119 dDocent_Contig_3835 106 . N C 1279.84 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=42;CIGAR=2X;DP=43;DPB=43;DPRA=0;EPP=94.2121;EPPR=0;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1405;QR=0;RO=0;RPL=0;RPP=94.2121;RPPR=0;RPR=42;RUN=1;SAF=0;SAP=94.2121;SAR=42;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:20:0,20:0:0:20:677:-61.2476,-6.0206,0 1|1:13:0,12:0:0:12:409:-36.7894,-3.61236,0 1|1:6:0,6:0:0:6:183:-16.769,-1.80618,0 1|1:4:0,4:0:0:4:136:-12.5758,-1.20412,0 dDocent_Contig_3836 10 . T C 78.7686 . AB=0.130435;ABP=57.5803;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=166;DPB=166;DPRA=1.51515;EPP=20.3821;EPPR=346.103;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=328;QR=6346;RO=158;RPL=0;RPP=20.3821;RPPR=346.103;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=158;SRP=346.103;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:46:40,6:40:1601:6:246:-8.67274,0,-130.476 0/0:54:52,2:52:2088:2:82:0,-8.47594,-180.32 0/0:37:37,0:37:1487:0:0:0,-11.1381,-134.075 0/0:29:29,0:29:1170:0:0:0,-8.72987,-105.577 dDocent_Contig_3837 23 . C T 341.758 . AB=0.144654;ABP=177.397;AC=1;AF=0.125;AN=8;AO=29;CIGAR=1X;DP=394;DPB=394;DPRA=2.24183;EPP=65.983;EPPR=795.598;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1163;QR=14494;RO=365;RPL=0;RPP=65.983;RPPR=795.598;RPR=29;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=365;SRP=795.598;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:159:136,23:136:5389:23:917:-34.9716,0,-436.996 0/0:106:103,3:103:4093:3:123:0,-20.4444,-356.881 0/0:78:75,3:75:2965:3:123:0,-12.0156,-255.489 0/0:51:51,0:51:2047:0:0:0,-15.3525,-184.416 dDocent_Contig_3838 9 . A T 250.537 . AB=0.208955;ABP=52.306;AC=3;AF=0.375;AN=8;AO=14;CIGAR=1X;DP=88;DPB=88;DPRA=1.06349;EPP=33.4109;EPPR=163.699;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=530;QR=2820;RO=74;RPL=0;RPP=33.4109;RPPR=163.699;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=74;SRP=163.699;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:21:21,0:21:793:0:0:0,-6.32163,-71.6917 0/1:28:23,5:23:886:5:181:-8.2121,0,-71.6311 0/1:17:15,2:15:572:2:77:-2.19163,0,-46.7031 0/1:22:15,7:15:569:7:272:-18.2246,0,-44.9273 dDocent_Contig_3839 17 . G T 317.747 . AB=0.28;ABP=24.0302;AC=3;AF=0.375;AN=8;AO=15;CIGAR=1X3M1X;DP=69;DPB=70.6;DPRA=0;EPP=35.5824;EPPR=115.927;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=586;QR=1974;RO=52;RPL=0;RPP=35.5824;RPPR=115.927;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:19:13,2,4:13:486:2,4:69,160:-9.3034,-7.62941,-46.7997,0,-34.2153,-38.6129 0|0:19:18,0,1:18:698:0,1:0,41:0,-5.41854,-62.7404,-1.625,-59.3552,-59.0542 0|1:22:14,0,8:14:523:0,8:0,306:-21.2745,-25.489,-68.2979,0,-43.1878,-40.7796 0|1:9:7,0,2:7:267:0,2:0,79:-4.78836,-6.89557,-28.7865,0,-22.2825,-21.6805 dDocent_Contig_3840 26 . T C 312.576 . AB=0.127962;ABP=256.682;AC=3;AF=0.375;AN=8;AO=33;CIGAR=1X;DP=306;DPB=306;DPRA=0;EPP=74.6689;EPPR=593.651;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1306;QR=10733;RO=272;RPL=0;RPP=74.6689;RPPR=593.651;RPR=33;RUN=1;SAF=33;SAP=74.6689;SAR=0;SRF=272;SRP=593.651;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:95:89,6:89:3512:6:224:0,-8.085,-295.608 0/1:108:94,14:94:3739:14:558:-18.0526,0,-304 0/1:58:51,7:51:1972:7:283:-8.38384,0,-160.219 0/1:45:38,6:38:1510:6:241:-8.41287,0,-122.491 dDocent_Contig_3841 29 . C T 4564.57 . AB=0.738462;ABP=99.3235;AC=4;AF=0.5;AN=8;AO=144;CIGAR=1X;DP=195;DPB=195;DPRA=0;EPP=315.702;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=59.2361;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5782;QR=2025;RO=51;RPL=0;RPP=315.702;RPPR=113.755;RPR=144;RUN=1;SAF=144;SAP=315.702;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:78:28,50:28:1124:50:2020:-158.496,0,-77.9639 0/1:66:13,53:13:495:53:2128:-170.617,0,-25.0095 0/1:27:7,20:7:285:20:794:-63.6483,0,-17.8966 0/1:24:3,21:3:121:21:840:-68.6851,0,-4.05548 dDocent_Contig_3842 30 . C A 145.447 . AB=0.119658;ABP=150.021;AC=2;AF=0.25;AN=8;AO=23;CIGAR=1X;DP=273;DPB=273;DPRA=0;EPP=52.9542;EPPR=545.878;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=935;QR=9966;RO=250;RPL=0;RPP=52.9542;RPPR=545.878;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=250;SRP=545.878;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:86:80,6:80:3212:6:246:0,-3.36846,-266.609 0/1:84:74,10:74:2915:10:406:-11.6141,0,-237.157 0/0:70:67,3:67:2668:3:120:0,-9.88441,-229.052 0/1:33:29,4:29:1171:4:163:-5.12444,0,-95.7319 dDocent_Contig_3843 1 . N G 146.934 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=159;QR=0;RO=0;RPL=0;RPP=11.6962;RPPR=0;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:4:0,4:0:0:4:159:-14.6923,-1.20412,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_3845 49 . G A 91.9309 . AB=0.125;ABP=90.9549;AC=2;AF=0.25;AN=8;AO=11;CIGAR=1X;DP=215;DPB=215;DPRA=0.413194;EPP=26.8965;EPPR=445.991;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=440;QR=8039;RO=204;RPL=0;RPP=26.8965;RPPR=445.991;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=204;SRP=445.991;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:96:96,0:96:3751:0:0:0,-28.8989,-337.628 0/0:47:45,2:45:1784:2:81:0,-6.46268,-153.09 0/1:59:53,6:53:2110:6:244:-4.57785,0,-172.323 0/1:13:10,3:10:394:3:115:-6.80899,0,-31.9027 dDocent_Contig_3846 23 . G A 320.41 . AB=0.227273;ABP=45.6501;AC=2;AF=0.25;AN=8;AO=15;CIGAR=1X;DP=141;DPB=141;DPRA=0.88;EPP=35.5824;EPPR=276.616;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=593;QR=5049;RO=126;RPL=0;RPP=35.5824;RPPR=276.616;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=126;SRP=276.616;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:50:50,0:50:1991:0:0:0,-15.0515,-179.373 0/1:37:30,7:30:1204:7:280:-14.4334,0,-97.498 0/1:29:21,8:21:845:8:313:-19.8014,0,-67.6298 0/0:25:25,0:25:1009:0:0:0,-7.52575,-91.1034 dDocent_Contig_3847 26 . C A 264.484 . AB=0.154472;ABP=130.562;AC=4;AF=0.5;AN=8;AO=19;CIGAR=1X;DP=123;DPB=123;DPRA=0;EPP=44.2683;EPPR=228.843;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=744;QR=4164;RO=104;RPL=0;RPP=44.2683;RPPR=228.843;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=104;SRP=228.843;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:41:35,6:35:1391:6:236:-9.26914,0,-113.105 0/1:38:32,6:32:1272:6:228:-9.44339,0,-103.308 0/1:29:25,4:25:1019:4:161:-6.14561,0,-83.2704 0/1:15:12,3:12:482:3:119:-6.57994,0,-39.2123 dDocent_Contig_3848 173 . T C 2652.73 . AB=0.619718;ABP=20.6879;AC=4;AF=0.5;AN=8;AO=88;CIGAR=1X;DP=142;DPB=142;DPRA=0;EPP=194.1;EPPR=120.27;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3464;QR=2135;RO=54;RPL=88;RPP=194.1;RPPR=120.27;RPR=0;RUN=1;SAF=0;SAP=194.1;SAR=88;SRF=0;SRP=120.27;SRR=54;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:43:14,29:14:560:29:1141:-90.0362,0,-37.7986 0/1:45:21,24:21:825:24:963:-73.4249,0,-61.0144 0/1:38:15,23:15:587:23:876:-67.706,0,-41.7247 0/1:16:4,12:4:163:12:484:-39.0951,0,-10.2419 dDocent_Contig_3849 30 . A G 7884.56 . AB=0.853107;ABP=194.701;AC=6;AF=0.75;AN=8;AO=249;CIGAR=1X;DP=282;DPB=282;DPRA=0;EPP=543.707;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=9644;QR=1271;RO=33;RPL=0;RPP=543.707;RPPR=74.6689;RPR=249;RUN=1;SAF=249;SAP=543.707;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:92:9,83:9:344:83:3208:-261.15,0,-3.61979 0/1:85:17,68:17:660:68:2637:-211.913,0,-34.1454 1/1:65:5,60:5:188:60:2317:-191.443,-2.284,0 1/1:40:2,38:2:79:38:1482:-126.144,-4.54396,0 dDocent_Contig_3850 12 . T G 1167.57 . AB=0.340741;ABP=32.7514;AC=4;AF=0.5;AN=8;AO=46;CIGAR=1X;DP=135;DPB=135;DPRA=0;EPP=102.898;EPPR=196.271;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.956522;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1789;QR=3450;RO=89;RPL=0;RPP=102.898;RPPR=196.271;RPR=46;RUN=1;SAF=46;SAP=102.898;SAR=0;SRF=89;SRP=196.271;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:24,5:24:946:5:192:-8.91578,0,-76.7207 0/1:33:24,9:24:915:9:348:-21.7416,0,-72.7211 0/1:51:32,19:32:1239:19:759:-53.2789,0,-96.4383 0/1:22:9,13:9:350:13:490:-37.8101,0,-25.2368 dDocent_Contig_3851 98 . N T 228.468 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=7;CIGAR=1X;DP=7;DPB=7;DPRA=0;EPP=18.2106;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=8.07091;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=250;QR=0;RO=0;RPL=7;RPP=18.2106;RPPR=0;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:7:0,7:0:0:7:250:-22.8467,-2.10721,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_3852 104 . N T 112.316 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=4;CIGAR=4X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=115;QR=0;RO=0;RPL=0;RPP=11.6962;RPPR=0;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:1:0,1:0:0:1:29:-2.89966,-0.30103,0 1|1:3:0,3:0:0:3:86:-8.02529,-0.90309,0 .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. dDocent_Contig_3853 12 . G T 165.53 . AB=0.117284;ABP=209.113;AC=1;AF=0.125;AN=8;AO=19;CIGAR=1X;DP=616;DPB=616;DPRA=1.07048;EPP=44.2683;EPPR=1299.38;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.998325;PAO=0;PQA=0;PQR=0;PRO=0;QA=731;QR=23514;RO=597;RPL=0;RPP=44.2683;RPPR=1299.38;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=597;SRP=1299.38;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:162:143,19:143:5634:19:731:-17.3489,0,-458.129 0/0:179:179,0:179:6987:0:0:0,-53.8844,-628.529 0/0:169:169,0:169:6668:0:0:0,-50.8741,-599.862 0/0:106:106,0:106:4225:0:0:0,-31.9092,-380.215 dDocent_Contig_3854 70 . G A 13751.6 . AB=0.813472;ABP=167.738;AC=6;AF=0.75;AN=8;AO=440;CIGAR=1X;DP=486;DPB=486;DPRA=0;EPP=958.458;EPPR=100.727;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=16281;QR=1667;RO=45;RPL=440;RPP=958.458;RPPR=100.727;RPR=0;RUN=1;SAF=440;SAP=958.458;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:143:5,137:5:172:137:5125:-445.45,-27.3146,0 1/1:150:4,146:4:156:146:5437:-474.898,-30.7372,0 0/1:107:24,83:24:908:83:3080:-245.152,0,-49.8261 0/1:86:12,74:12:431:74:2639:-211.858,0,-13.239 dDocent_Contig_3855 209 . N G 374.959 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=10;CIGAR=1X;DP=10;DPB=10;DPRA=0;EPP=24.725;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=397;QR=0;RO=0;RPL=10;RPP=24.725;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:82:-7.77968,-0.60206,0 1/1:5:0,5:0:0:5:194:-17.8322,-1.50515,0 1/1:3:0,3:0:0:3:121:-11.2802,-0.90309,0 ./.:.:.:.:.:.:.:. dDocent_Contig_3856 167 . T C 3866.27 . AB=0.0561798;ABP=155.282;AC=0;AF=0;AN=8;AO=5;CIGAR=7M1X3M;DP=187;DPB=199.182;DPRA=0;EPP=13.8677;EPPR=105.07;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=197;QR=1814;RO=47;RPL=5;RPP=13.8677;RPPR=105.07;RPR=0;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=105.07;SRR=47;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:89:33,50,5:33:1283:50,5:1808,197:-137.612,0,-90.4208,-131.335,-89.2633,-235.273 0|0:60:6,54,0:6:234:54,0:2006,0:-162.68,0,-3.36914,-164.486,-19.6248,-183.723 0|0:20:5,14,0:5:194:14,0:537,0:-42.6718,0,-11.8232,-44.1769,-16.0376,-60.1195 0|0:18:3,15,0:3:103:15,0:597,0:-48.652,0,-4.1908,-49.5551,-8.70625,-57.9091 dDocent_Contig_3857 17 . T C 375.823 . AB=0.340909;ABP=12.6832;AC=2;AF=0.25;AN=8;AO=17;CIGAR=1X;DP=177;DPB=177;DPRA=0.307971;EPP=39.9253;EPPR=350.446;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=659;QR=6384;RO=160;RPL=0;RPP=39.9253;RPPR=350.446;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=160;SRP=350.446;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:92:92,0:92:3675:0:0:0,-27.6948,-330.756 0/0:41:39,2:39:1562:2:78:0,-4.93876,-133.408 0/1:31:19,12:19:750:12:464:-32.7792,0,-58.4849 0/1:13:10,3:10:397:3:117:-6.99699,0,-32.1717 dDocent_Contig_3858 8 . C A 16686.9 . AB=0.043043;ABP=1814.89;AC=4;AF=0.5;AN=8;AO=43;CIGAR=1M1X4M1X2M2X;DP=999;DPB=929.182;DPRA=0;EPP=96.3836;EPPR=257.073;GTI=0;LEN=1;MEANALT=8.75;MQM=37.3488;MQMR=59.9145;NS=4;NUMALT=4;ODDS=0;PAIRED=0.0232558;PAIREDR=0.897436;PAO=0;PQA=0;PQR=0;PRO=0;QA=1561;QR=4589;RO=117;RPL=0;RPP=96.3836;RPPR=257.073;RPR=43;RUN=1;SAF=43;SAP=96.3836;SAR=0;SRF=117;SRP=257.073;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:292:31,4,178,9,51:31:1218:4,178,9,51:152,6235,333,1010:-478.188,-475.893,-574.879,0,-88.5985,-46.6451,-462.461,-551.025,-75.1647,-559.943,-425.654,-514.216,-38.409,-500.786,-510.49 0|1:310:31,23,201,12,31:31:1219:23,201,12,31:852,7395,389,625:-575.502,-519.063,-612.418,0,-34.5268,-39.8041,-556.333,-590.841,-71.8084,-652.999,-546.202,-580.71,-61.7076,-617.979,-637.146 0|1:246:16,11,162,8,30:16:627:11,162,8,30:424,5604,305,574:-431.997,-404.374,-452.626,0,-19.1346,-2.81718,-413.74,-432.864,-28.5048,-462.896,-402.244,-421.367,-17.058,-430.734,-444.775 0|1:151:39,3,72,14,15:39:1525:3,72,14,15:103,2533,534,262:-187.989,-191.779,-316.271,0,-117.492,-103.768,-158.746,-276.194,-84.4568,-279.93,-184.689,-302.129,-110.417,-269.101,-305.563 dDocent_Contig_3860 11 . G C 109.61 . AB=0.227273;ABP=17.2236;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=91;DPB=91;DPRA=0.956522;EPP=13.8677;EPPR=189.757;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.2;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=200;QR=3465;RO=86;RPL=0;RPP=13.8677;RPPR=189.757;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=86;SRP=189.757;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:17,5:17:690:5:200:-11.7569,0,-55.806 0/0:35:35,0:35:1417:0:0:0,-10.536,-127.779 0/0:10:10,0:10:406:0:0:0,-3.0103,-36.9004 0/0:24:24,0:24:952:0:0:0,-7.22472,-85.9784 dDocent_Contig_3861 89 . A T 199.311 . AB=0.166667;ABP=101.45;AC=1;AF=0.125;AN=8;AO=22;CIGAR=1X;DP=254;DPB=254;DPRA=5.71429;EPP=50.7827;EPPR=506.792;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=719;QR=8198;RO=232;RPL=22;RPP=50.7827;RPPR=506.792;RPR=0;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=232;SRP=506.792;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:102:85,17:85:3011:17:568:-20.7269,0,-240.518 0/0:99:97,2:97:3434:2:44:0,-25.6236,-305.098 0/0:39:36,3:36:1281:3:107:0,-1.758,-105.612 0/0:14:14,0:14:472:0:0:0,-4.21442,-42.7977 dDocent_Contig_3862 22 . A G 327.703 . AB=0.302326;ABP=17.6046;AC=2;AF=0.25;AN=8;AO=14;CIGAR=1X;DP=137;DPB=137;DPRA=0.728682;EPP=33.4109;EPPR=270.101;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.99187;PAO=0;PQA=0;PQR=0;PRO=0;QA=565;QR=4922;RO=123;RPL=0;RPP=33.4109;RPPR=270.101;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=123;SRP=270.101;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:43:43,0:43:1737:0:0:0,-12.9443,-156.546 0/0:51:50,1:50:1985:1:41:0,-11.258,-174.754 0/1:28:19,9:19:752:9:362:-24.5128,0,-59.5724 0/1:15:11,4:11:448:4:162:-10.4513,0,-36.1603 dDocent_Contig_3863 107 . N G 72.0534 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=35.3333;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0.333333;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=95;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1:0,1:0:0:1:34:-2.26696,-0.30103,0 1/1:2:0,2:0:0:2:61:-4.62972,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_3864 11 . C A 226.534 . AB=0.22;ABP=37.059;AC=2;AF=0.25;AN=8;AO=11;CIGAR=1X;DP=88;DPB=88;DPRA=1.31579;EPP=26.8965;EPPR=170.214;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.974026;PAO=0;PQA=0;PQR=0;PRO=0;QA=435;QR=3126;RO=77;RPL=0;RPP=26.8965;RPPR=170.214;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=77;SRP=170.214;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:37:28,9:28:1136:9:356:-21.2627,0,-91.3814 0/0:11:11,0:11:447:0:0:0,-3.31133,-40.5855 0/0:27:27,0:27:1093:0:0:0,-8.12781,-98.6524 0/1:13:11,2:11:450:2:79:-3.58385,0,-36.9424 dDocent_Contig_3865 38 . T C 85.6286 . AB=0.170732;ABP=41.6201;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=243;DPB=243;DPRA=0.608911;EPP=18.2106;EPPR=504.657;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.991489;PAO=0;PQA=0;PQR=0;PRO=0;QA=242;QR=8708;RO=235;RPL=0;RPP=18.2106;RPPR=513.306;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=234;SRP=504.657;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:78:78,0:78:2891:0:0:0,-23.4803,-260.378 0/0:73:73,0:73:2713:0:0:0,-21.9752,-244.368 0/0:51:51,0:51:1877:0:0:0,-15.3525,-169.18 0/1:41:33,7:33:1227:7:242:-9.65977,0,-98.2714 dDocent_Contig_3866 145 . C T 1986.15 . AB=0.57554;ABP=9.89965;AC=4;AF=0.5;AN=8;AO=80;CIGAR=1X;DP=139;DPB=139;DPRA=0;EPP=176.728;EPPR=131.127;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.975;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2713;QR=2037;RO=59;RPL=0;RPP=176.728;RPPR=131.127;RPR=80;RUN=1;SAF=0;SAP=176.728;SAR=80;SRF=0;SRP=131.127;SRR=59;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:43:17,26:17:593:26:906:-68.913,0,-40.7539 0/1:22:4,18:4:123:18:604:-48.0543,0,-4.75101 0/1:58:27,31:27:938:31:1029:-75.4515,0,-67.276 0/1:16:11,5:11:383:5:174:-11.1855,0,-29.9885 dDocent_Contig_3867 52 . G C 131.027 . AB=0.16129;ABP=64.7922;AC=1;AF=0.125;AN=8;AO=14;CIGAR=1X;DP=246;DPB=246;DPRA=1.92857;EPP=33.4109;EPPR=506.792;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.5;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.982759;PAO=0;PQA=0;PQR=0;PRO=0;QA=490;QR=8272;RO=232;RPL=14;RPP=33.4109;RPPR=506.792;RPR=0;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=232;SRP=506.792;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:62:52,10:52:1815:10:358:-13.8986,0,-141.986 0/0:100:96,4:96:3433:4:132:0,-17.8984,-296.953 0/0:55:55,0:55:1979:0:0:0,-16.5566,-178.369 0/0:29:29,0:29:1045:0:0:0,-8.72987,-94.3589 dDocent_Contig_3868 15 . G A 5563.08 . AB=0.494792;ABP=3.10078;AC=4;AF=0.5;AN=8;AO=190;CIGAR=1X;DP=384;DPB=384;DPRA=0;EPP=415.59;EPPR=424.276;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7512;QR=7632;RO=194;RPL=0;RPP=415.59;RPPR=424.276;RPR=190;RUN=1;SAF=190;SAP=415.59;SAR=0;SRF=194;SRP=424.276;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:90:41,49:41:1632:49:1912:-145.185,0,-120.023 0/1:151:76,75:76:2987:75:2960:-221.029,0,-223.48 0/1:90:51,39:51:1994:39:1557:-113.281,0,-152.572 0/1:53:26,27:26:1019:27:1083:-81.8027,0,-76.0481 dDocent_Contig_3869 18 . C T 136.09 . AB=0.123188;ABP=173.203;AC=2;AF=0.25;AN=8;AO=17;CIGAR=1X;DP=326;DPB=326;DPRA=0.734043;EPP=39.9253;EPPR=673.995;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=622;QR=12389;RO=309;RPL=0;RPP=39.9253;RPPR=673.995;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=309;SRP=673.995;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:77:77,0:77:3104:0:0:0,-23.1793,-279.427 0/0:111:111,0:111:4432:0:0:0,-33.4143,-398.819 0/1:94:81,13:81:3245:13:474:-14.6942,0,-263.814 0/1:44:40,4:40:1608:4:148:-0.436543,0,-131.709 dDocent_Contig_3871 47 . C T 9863.34 . AB=0.196203;ABP=636.311;AC=4;AF=0.5;AN=8;AO=155;CIGAR=1X2M;DP=790;DPB=790;DPRA=0;EPP=339.589;EPPR=650.109;GTI=0;LEN=1;MEANALT=2.75;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6054;QR=11625;RO=298;RPL=0;RPP=339.589;RPPR=650.109;RPR=155;RUN=1;SAF=155;SAP=339.589;SAR=0;SRF=298;SRP=650.109;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:244:82,102,59:82:3221:102,59:4022,2301:-306.22,0,-234.203,-141.783,-75.7862,-388.928 0|1:236:105,91,40:105:4096:91,40:3560,1573:-261.074,0,-309.276,-163.297,-207.285,-487.927 0|1:190:75,83,31:75:2918:83,31:3264,1203:-245.902,0,-214.805,-169.657,-140.967,-400.113 0|1:120:36,58,25:36:1390:58,25:2296,977:-178.127,0,-96.6896,-108.647,-33.8281,-215.268 dDocent_Contig_3872 107 . N A 191.513 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=6;CIGAR=1X;DP=6;DPB=6;DPRA=0;EPP=16.0391;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=7.37776;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=209;QR=0;RO=0;RPL=0;RPP=16.0391;RPPR=0;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:6:0,6:0:0:6:209:-19.1511,-1.80618,0 dDocent_Contig_3873 32 . C T 1694.29 . AB=0.225806;ABP=245.935;AC=4;AF=0.5;AN=8;AO=84;CIGAR=1X;DP=372;DPB=372;DPRA=0;EPP=185.414;EPPR=628.394;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.986111;PAO=0;PQA=0;PQR=0;PRO=0;QA=3168;QR=11354;RO=288;RPL=0;RPP=185.414;RPPR=628.394;RPR=84;RUN=1;SAF=84;SAP=185.414;SAR=0;SRF=288;SRP=628.394;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:106:88,18:88:3470:18:670:-28.7177,0,-280.419 0/1:93:73,20:73:2842:20:753:-40.0987,0,-227.88 0/1:91:62,29:62:2462:29:1101:-71.9981,0,-194.331 0/1:82:65,17:65:2580:17:644:-33.6044,0,-207.636 dDocent_Contig_3874 119 . G A 142.502 . AB=0.15;ABP=109.412;AC=3;AF=0.375;AN=8;AO=15;CIGAR=1X3M1X;DP=142;DPB=142;DPRA=0.793651;EPP=35.5824;EPPR=278.787;GTI=0;LEN=1;MEANALT=1;MQM=50;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=523;QR=4306;RO=127;RPL=0;RPP=35.5824;RPPR=278.787;RPR=15;RUN=1;SAF=0;SAP=35.5824;SAR=15;SRF=0;SRP=278.787;SRR=127;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:47:41,6:41:1402:6:207:-4.75662,0,-112.328 0|0:42:42,0:42:1397:0:0:0,-12.6433,-126.019 0|1:28:22,6:22:762:6:210:-10.7462,0,-60.4718 0|1:25:22,3:22:745:3:106:-2.32653,0,-59.8393 dDocent_Contig_3875 20 . C G 11171.7 . AB=0.77971;ABP=237.46;AC=5;AF=0.625;AN=8;AO=347;CIGAR=1X;DP=425;DPB=425;DPRA=0;EPP=756.511;EPPR=172.385;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=13689;QR=3149;RO=78;RPL=0;RPP=756.511;RPPR=172.385;RPR=347;RUN=1;SAF=347;SAP=756.511;SAR=0;SRF=78;SRP=172.385;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:127:19,108:19:767:108:4263:-345.406,0,-31.1196 0/1:143:28,115:28:1135:115:4498:-361.719,0,-59.382 0/1:75:29,46:29:1167:46:1813:-140.806,0,-82.7308 1/1:80:2,78:2:80:78:3115:-272.834,-16.4908,0 dDocent_Contig_3876 8 . A T 339.406 . AB=0.123636;ABP=341.357;AC=1;AF=0.125;AN=8;AO=81;CIGAR=1X;DP=1074;DPB=1074;DPRA=0;EPP=178.9;EPPR=2120.2;GTI=0;LEN=1;MEANALT=2.5;MQM=59.5309;MQMR=59.0695;NS=4;NUMALT=1;ODDS=5.55112e-17;PAIRED=0;PAIREDR=0.150153;PAO=0;PQA=0;PQR=0;PRO=0;QA=3099;QR=37392;RO=979;RPL=0;RPP=178.9;RPPR=2128.88;RPR=81;RUN=1;SAF=81;SAP=178.9;SAR=0;SRF=978;SRP=2120.2;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:355:327,24:327:12523:24:925:0,-22.4542,-1042.18 0/0:308:293,14:293:11172:14:529:0,-44.7272,-954.445 0/1:275:237,34:237:9046:34:1298:-35.0375,0,-731.376 0/0:136:122,9:122:4651:9:347:0,-8.23191,-386.527 dDocent_Contig_3877 44 . C T 156.162 . AB=0.0784314;ABP=81.7368;AC=0;AF=0;AN=8;AO=5;CIGAR=1X1M1X3M;DP=225;DPB=225;DPRA=0.472826;EPP=13.8677;EPPR=426.447;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=185;QR=7696;RO=195;RPL=0;RPP=13.8677;RPPR=426.447;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=195;SRP=426.447;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:51:32,4,8,7:32:1289:4,8,7:145,316,278:-16.3747,-14.1768,-119.219,0,-94.4208,-103.847,-3.11773,-97.5384,-83.37,-107.266 0|0:36:35,1,0,0:35:1390:1,0,0:40,0,0:0,-6.8414,-121.366,-10.536,-121.667,-124.962,-10.536,-121.667,-124.962,-124.962 0|0:92:87,0,3,1:87:3396:0,3,1:0,121,40:0,-26.1896,-305.327,-16.2136,-295.353,-294.45,-22.895,-302.032,-292.058,-301.731 0|0:46:41,0,4,0:41:1621:0,4,0:0,161,0:-0.952692,-13.2949,-146.69,0,-133.42,-132.216,-13.2949,-146.69,-133.42,-146.69 dDocent_Contig_3878 82 . C T 23975.8 . AB=0.771355;ABP=744.273;AC=4;AF=0.5;AN=8;AO=894;CIGAR=1X;DP=1159;DPB=1159;DPRA=0;EPP=1866.92;EPPR=552.393;GTI=0;LEN=1;MEANALT=2;MQM=59.4541;MQMR=59.9802;NS=4;NUMALT=1;ODDS=0;PAIRED=0.963087;PAIREDR=0.948617;PAO=0;PQA=0;PQR=0;PRO=0;QA=30826;QR=8768;RO=253;RPL=894;RPP=1944.31;RPPR=552.393;RPR=0;RUN=1;SAF=885;SAP=1866.92;SAR=9;SRF=253;SRP=552.393;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:408:97,307:97:3366:307:10714:-822.819,0,-181.203 0/1:319:88,228:88:3042:228:7823:-608.662,0,-178.542 0/1:293:42,247:42:1456:247:8439:-666.269,0,-43.9887 0/1:139:26,112:26:904:112:3850:-304.819,0,-39.785 dDocent_Contig_3879 130 . T C 839.446 . AB=0.200787;ABP=200.529;AC=3;AF=0.375;AN=8;AO=53;CIGAR=1X;DP=382;DPB=382;DPRA=0;EPP=118.098;EPPR=715.253;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1886;QR=11776;RO=328;RPL=0;RPP=118.098;RPPR=715.253;RPR=53;RUN=1;SAF=0;SAP=118.098;SAR=53;SRF=0;SRP=715.253;SRR=328;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:113:90,22:90:3257:22:760:-34.6279,0,-259.237 0/0:128:126,2:126:4541:2:74:0,-31.506,-401.79 0/1:84:65,19:65:2286:19:691:-37.2336,0,-180.689 0/1:57:47,10:47:1692:10:361:-15.6748,0,-135.395 dDocent_Contig_3880 107 . N G 54.4318 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=4.60517;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=59;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:3:0,2:0:0:2:59:-5.43886,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_3881 1 . N G 76.9006 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=4.60517;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:81:-7.68573,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_3882 46 . T A 308.929 . AB=0.233333;ABP=40.0701;AC=2;AF=0.25;AN=8;AO=15;CIGAR=1X;DP=114;DPB=114;DPRA=3.46667;EPP=35.5824;EPPR=217.986;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.933333;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=600;QR=3953;RO=99;RPL=15;RPP=35.5824;RPPR=217.986;RPR=0;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=99;SRP=217.986;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:40:29,11:29:1151:11:437:-27.6426,0,-91.8271 0/0:44:43,1:43:1718:1:40:0,-9.24964,-150.845 0/1:20:17,3:17:686:3:123:-5.44419,0,-56.0494 0/0:10:10,0:10:398:0:0:0,-3.0103,-36.177 dDocent_Contig_3883 13 . T A 29987.8 . AB=0.900763;ABP=368.514;AC=7;AF=0.875;AN=8;AO=894;CIGAR=1X;DP=942;DPB=942;DPRA=0;EPP=1944.31;EPPR=105.07;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=35010;QR=1745;RO=47;RPL=0;RPP=1944.31;RPPR=105.07;RPR=894;RUN=1;SAF=894;SAP=1944.31;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:262:26,236:26:970:236:9305:-758.097,0,-8.73469 1/1:247:12,235:12:437:235:9160:-784.298,-34.6867,0 1/1:255:6,249:6:223:249:9722:-854.077,-56.3353,0 1/1:178:3,174:3:115:174:6823:-603.099,-42.9527,0 dDocent_Contig_3884 16 . C G 5448.51 . AB=0.829268;ABP=196.059;AC=4;AF=0.5;AN=8;AO=170;CIGAR=1X;DP=205;DPB=205;DPRA=0;EPP=372.161;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.857143;PAO=0;PQA=0;PQR=0;PRO=0;QA=6785;QR=1394;RO=35;RPL=0;RPP=372.161;RPPR=79.0118;RPR=170;RUN=1;SAF=170;SAP=372.161;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:86:8,78:8:313:78:3099:-253.105,0,-2.64282 0/1:61:15,46:15:595:46:1854:-148.697,0,-35.5202 0/1:42:6,36:6:243:36:1426:-115.948,0,-9.60492 0/1:16:6,10:6:243:10:406:-32.0841,0,-17.4311 dDocent_Contig_3885 14 . T C 2468.77 . AB=0.250597;ABP=229.388;AC=4;AF=0.5;AN=8;AO=105;CIGAR=1X;DP=419;DPB=419;DPRA=0;EPP=231.015;EPPR=684.853;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4187;QR=12449;RO=314;RPL=0;RPP=231.015;RPPR=684.853;RPR=105;RUN=1;SAF=105;SAP=231.015;SAR=0;SRF=314;SRP=684.853;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:119:95,24:95:3749:24:966:-51.4182,0,-301.611 0/1:178:127,51:127:5048:51:2026:-128.948,0,-400.625 0/1:78:56,22:56:2244:22:870:-55.1267,0,-178.647 0/1:44:36,8:36:1408:8:325:-16.3743,0,-113.729 dDocent_Contig_3886 97 . T A 831.87 . AB=0.471429;ABP=3.50664;AC=4;AF=0.5;AN=8;AO=33;CIGAR=1X2M1X;DP=70;DPB=81.75;DPRA=0;EPP=74.6689;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=59.8485;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.939394;PAIREDR=0.837838;PAO=47;PQA=1578;PQR=0;PRO=0;QA=1214;QR=1389;RO=37;RPL=0;RPP=74.6689;RPPR=83.3548;RPR=33;RUN=1;SAF=0;SAP=74.6689;SAR=33;SRF=0;SRP=83.3548;SRR=37;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:20:12,8:12:454:8:285:-19.6243,0,-34.83 0|1:22:6,16:6:226:16:606:-47.8957,0,-13.7144 0|1:17:10,7:10:376:7:252:-17.5563,0,-28.7151 0|1:11:9,2:9:333:2:71:-3.09834,0,-26.6876 dDocent_Contig_3887 60 . C G 6934.41 . AB=0.255627;ABP=648.28;AC=4;AF=0.5;AN=8;AO=318;CIGAR=1X;DP=1244;DPB=1244;DPRA=0;EPP=693.539;EPPR=2011.62;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=11911;QR=35028;RO=925;RPL=318;RPP=693.539;RPPR=2011.62;RPR=0;RUN=1;SAF=318;SAP=693.539;SAR=0;SRF=925;SRP=2011.62;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:418:303,114:303:11534:114:4226:-254.83,0,-912.005 0/1:353:269,84:269:10182:84:3162:-178.471,0,-809.78 0/1:289:211,78:211:7990:78:2953:-178.945,0,-631.906 0/1:184:142,42:142:5322:42:1570:-86.1837,0,-423.604 dDocent_Contig_3888 9 . A T 937.434 . AB=0.485294;ABP=3.13803;AC=1;AF=0.125;AN=8;AO=40;CIGAR=1X;DP=296;DPB=296;DPRA=1.11429;EPP=89.8692;EPPR=558.907;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1540;QR=9773;RO=256;RPL=0;RPP=89.8692;RPPR=558.907;RPR=40;RUN=1;SAF=40;SAP=89.8692;SAR=0;SRF=256;SRP=558.907;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:106:106,0:106:4070:0:0:0,-31.9092,-366.386 0/1:68:35,33:35:1343:33:1278:-94.8403,0,-100.684 0/0:88:81,7:81:3085:7:262:0,-2.55338,-253.877 0/0:34:34,0:34:1275:0:0:0,-10.235,-115.039 dDocent_Contig_3889 57 . G A 1408.73 . AB=0.251046;ABP=131.672;AC=3;AF=0.375;AN=8;AO=60;CIGAR=1X;DP=273;DPB=273;DPRA=2.34314;EPP=133.299;EPPR=465.534;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2394;QR=8441;RO=213;RPL=60;RPP=133.299;RPPR=465.534;RPR=0;RUN=1;SAF=60;SAP=133.299;SAR=0;SRF=213;SRP=465.534;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:111:65,46:65:2565:46:1837:-132.129,0,-197.56 0/1:79:70,9:70:2792:9:360:-8.98007,0,-227.607 0/1:49:44,5:44:1720:5:197:-3.35481,0,-140.261 0/0:34:34,0:34:1364:0:0:0,-10.235,-123.016 dDocent_Contig_3890 11 . A T 4162.2 . AB=0.453216;ABP=9.51202;AC=4;AF=0.5;AN=8;AO=155;CIGAR=1X;DP=342;DPB=342;DPRA=0;EPP=339.589;EPPR=409.076;GTI=0;LEN=1;MEANALT=1;MQM=59.9097;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.967914;PAO=0;PQA=0;PQR=0;PRO=0;QA=5812;QR=7464;RO=187;RPL=0;RPP=339.589;RPPR=409.076;RPR=155;RUN=1;SAF=155;SAP=339.589;SAR=0;SRF=187;SRP=409.076;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:71:48,23:48:1915:23:852:-55.6231,0,-151.177 0/1:88:42,46:42:1680:46:1718:-128.361,0,-124.936 0/1:126:69,57:69:2742:57:2145:-155.352,0,-208.977 0/1:57:28,29:28:1127:29:1097:-81.8739,0,-84.5557 dDocent_Contig_3891 30 . G T 59.4883 . AB=0.102804;ABP=149.635;AC=2;AF=0.25;AN=8;AO=11;CIGAR=1X;DP=207;DPB=207;DPRA=1.07;EPP=26.8965;EPPR=428.619;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.989796;PAO=0;PQA=0;PQR=0;PRO=0;QA=440;QR=7816;RO=196;RPL=0;RPP=26.8965;RPPR=428.619;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=196;SRP=428.619;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:40:40,0:40:1583:0:0:0,-12.0412,-142.705 0/0:60:60,0:60:2399:0:0:0,-18.0618,-216.062 0/1:57:51,6:51:2030:6:235:-4.35858,0,-165.731 0/1:50:45,5:45:1804:5:205:-3.78351,0,-147.521 dDocent_Contig_3892 72 . T C 302.538 . AB=0.243902;ABP=49.7234;AC=2;AF=0.25;AN=8;AO=22;CIGAR=1X;DP=189;DPB=189;DPRA=0.553991;EPP=50.7827;EPPR=365.646;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=688;QR=5038;RO=167;RPL=22;RPP=50.7827;RPPR=365.646;RPR=0;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=167;SRP=365.646;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:71:71,0:71:2099:0:0:0,-21.3731,-189.165 0/1:53:39,14:39:1232:14:438:-23.7651,0,-95.2122 0/0:36:34,2:34:1028:2:60:0,-5.13799,-87.1068 0/1:29:23,6:23:679:6:190:-8.68254,0,-52.6649 dDocent_Contig_3893 13 . T A 4521.29 . AB=0.586777;ABP=10.9245;AC=6;AF=0.75;AN=8;AO=147;CIGAR=1X;DP=197;DPB=197;DPRA=0;EPP=322.217;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.993197;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5440;QR=1872;RO=50;RPL=0;RPP=322.217;RPPR=111.584;RPR=147;RUN=1;SAF=147;SAP=322.217;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:49:0,49:0:0:49:1828:-164.783,-14.7505,0 1/1:27:0,27:0:0:27:989:-89.319,-8.12781,0 0/1:77:42,35:42:1582:35:1302:-94.2891,0,-119.466 0/1:44:8,36:8:290:36:1321:-105.931,0,-13.2027 dDocent_Contig_3894 55 . C G 30.2123 . AB=0.119048;ABP=55.9529;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=161;DPB=161;DPRA=1.05882;EPP=13.8677;EPPR=341.76;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=50.6603;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.769231;PAO=0;PQA=0;PQR=0;PRO=0;QA=179;QR=5570;RO=156;RPL=5;RPP=13.8677;RPPR=341.76;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=156;SRP=341.76;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:42:37,5:37:1327:5:179:-3.81669,0,-94.6256 0/0:38:38,0:38:1364:0:0:0,-11.4391,-110.13 0/0:55:55,0:55:1963:0:0:0,-16.5566,-150.754 0/0:26:26,0:26:916:0:0:0,-7.82678,-77.1392 dDocent_Contig_3895 25 . G A 13463.5 . AB=0.494041;ABP=3.29497;AC=4;AF=0.5;AN=8;AO=456;CIGAR=1X;DP=923;DPB=923;DPRA=0;EPP=993.202;EPPR=1017.09;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=18105;QR=18406;RO=467;RPL=0;RPP=993.202;RPPR=1017.09;RPR=456;RUN=1;SAF=456;SAP=993.202;SAR=0;SRF=467;SRP=1017.09;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:251:135,116:135:5406:116:4602:-338.542,0,-410.82 0/1:288:138,150:138:5427:150:5975:-450.844,0,-401.573 0/1:239:122,117:122:4763:117:4665:-347.829,0,-356.643 0/1:145:72,73:72:2810:73:2863:-214.126,0,-209.371 dDocent_Contig_3896 33 . G A 73.6039 . AB=0.114286;ABP=93.4676;AC=1;AF=0.125;AN=8;AO=10;CIGAR=1X;DP=254;DPB=254;DPRA=0.895522;EPP=24.725;EPPR=532.85;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=404;QR=9693;RO=244;RPL=0;RPP=24.725;RPPR=532.85;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=244;SRP=532.85;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:73:73,0:73:2892:0:0:0,-21.9752,-260.373 0/1:70:62,8:62:2482:8:324:-8.4573,0,-202.449 0/0:50:48,2:48:1909:2:80:0,-7.45992,-164.421 0/0:61:61,0:61:2410:0:0:0,-18.3628,-217.051 dDocent_Contig_3897 177 . C A 40.4629 . AB=0.142857;ABP=26.2761;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=72;DPB=72;DPRA=1.23529;EPP=9.52472;EPPR=152.842;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=123;QR=2710;RO=69;RPL=3;RPP=9.52472;RPPR=152.842;RPR=0;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=152.842;SRR=69;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:10:10,0:10:400:0:0:0,-3.0103,-36.3575 0/0:17:17,0:17:674:0:0:0,-5.11751,-60.9898 0/0:24:24,0:24:933:0:0:0,-7.22472,-84.2715 0/1:21:18,3:18:703:3:123:-5.14316,0,-57.273 dDocent_Contig_3898 57 . C A 201.882 . AB=0.183333;ABP=55.2704;AC=2;AF=0.25;AN=8;AO=12;CIGAR=1X;DP=119;DPB=119;DPRA=0.710526;EPP=29.068;EPPR=235.358;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=482;QR=4288;RO=107;RPL=12;RPP=29.068;RPPR=235.358;RPR=0;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=107;SRP=235.358;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:38:38,0:38:1517:0:0:0,-11.4391,-136.767 0/1:27:24,3:24:968:3:118:-2.87377,0,-79.2913 0/1:33:25,8:25:1006:8:323:-19.5046,0,-80.9021 0/0:21:20,1:20:797:1:41:0,-2.22706,-67.9496 dDocent_Contig_3899 50 . T A 1666.3 . AB=0.207317;ABP=64.0234;AC=1;AF=0.125;AN=8;AO=17;CIGAR=3X;DP=118;DPB=118;DPRA=0;EPP=39.9253;EPPR=83.3548;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=667;QR=1466;RO=37;RPL=17;RPP=39.9253;RPPR=83.3548;RPR=0;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:50:16,12,4,18:16:643:12,4,18:467,163,711:-53.6857,-20.1258,-69.5021,-45.0531,-59.6662,-96.8389,0,-14.6168,-39.5421,-47.5722 1|0:32:4,5,2,21:4:162:5,2,21:200,61,846:-71.6641,-56.3924,-68.2472,-67.9883,-64.8726,-80.7449,-3.11771,0,-11.6184,-10.166 0|0:18:9,0,0,9:9:361:0,0,9:0,0,344:-25.8917,-28.6009,-58.3545,-28.6009,-58.3545,-58.3545,0,-30.1448,-30.1448,-27.4355 0|0:18:8,0,3,7:8:300:0,3,7:0,123,277:-20.3779,-22.7861,-47.3439,-12.6296,-37.1875,-36.2844,0,-24.5435,-14.3818,-22.4363 dDocent_Contig_3900 68 . A G 82.9339 . AB=0.121212;ABP=85.263;AC=1;AF=0.125;AN=8;AO=13;CIGAR=1X;DP=295;DPB=295;DPRA=1.52137;EPP=31.2394;EPPR=615.366;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=524;QR=11088;RO=282;RPL=13;RPP=31.2394;RPPR=615.366;RPR=0;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=282;SRP=615.366;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:97:97,0:97:3814:0:0:0,-29.1999,-343.275 0/0:112:107,5:107:4218:5:203:0,-15.0623,-360.928 0/1:66:58,8:58:2300:8:321:-9.3903,0,-187.3 0/0:20:20,0:20:756:0:0:0,-6.0206,-68.3474 dDocent_Contig_3901 121 . A T 1792.98 . AB=0.35743;ABP=46.9717;AC=4;AF=0.5;AN=8;AO=89;CIGAR=1X;DP=249;DPB=249;DPRA=0;EPP=196.271;EPPR=350.446;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2867;QR=5406;RO=160;RPL=0;RPP=196.271;RPPR=350.446;RPR=89;RUN=1;SAF=0;SAP=196.271;SAR=89;SRF=0;SRP=350.446;SRR=160;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:72:55,17:55:1861:17:527:-26.0517,0,-146.095 0/1:95:50,45:50:1693:45:1438:-101.1,0,-124.058 0/1:51:32,19:32:1057:19:638:-42.3843,0,-80.0756 0/1:31:23,8:23:795:8:264:-14.751,0,-62.5375 dDocent_Contig_3902 8 . A G 3121.33 . AB=0.601093;ABP=19.2548;AC=4;AF=0.5;AN=8;AO=110;CIGAR=1X;DP=183;DPB=183;DPRA=0;EPP=94.2911;EPPR=128.688;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.274;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=0.627273;PAIREDR=0.712329;PAO=0;PQA=0;PQR=0;PRO=0;QA=4122;QR=2758;RO=73;RPL=0;RPP=241.872;RPPR=161.528;RPR=110;RUN=1;SAF=89;SAP=94.2911;SAR=21;SRF=69;SRP=128.688;SRR=4;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:40:16,24:16:613:24:895:-68.8222,0,-43.4682 0/1:59:20,39:20:737:39:1458:-113.739,0,-48.8907 0/1:57:20,37:20:769:37:1383:-107.593,0,-52.3797 0/1:27:17,10:17:639:10:386:-26.9688,0,-47.1814 dDocent_Contig_3903 86 . A T 216.673 . AB=0.173913;ABP=87.981;AC=1;AF=0.125;AN=8;AO=17;CIGAR=1X;DP=312;DPB=312;DPRA=0.743017;EPP=39.9253;EPPR=643.595;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=592;QR=9769;RO=295;RPL=17;RPP=39.9253;RPPR=643.595;RPR=0;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=295;SRP=643.595;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:72:72,0:72:2390:0:0:0,-21.6742,-215.366 0/0:107:107,0:107:3556:0:0:0,-32.2102,-320.272 0/1:92:76,16:76:2500:16:557:-22.7643,0,-197.564 0/0:41:40,1:40:1323:1:35:0,-8.8436,-115.866 dDocent_Contig_3904 10 . G A 129.246 . AB=0;ABP=0;AC=0;AF=0;AN=8;AO=3;CIGAR=1X2M1X3M1X;DP=89;DPB=89;DPRA=0;EPP=9.52472;EPPR=172.385;GTI=0;LEN=1;MEANALT=1;MQM=50.3333;MQMR=60;NS=4;NUMALT=3;ODDS=3.46945e-18;PAIRED=0.666667;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=116;QR=3012;RO=78;RPL=0;RPP=9.52472;RPPR=172.385;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=78;SRP=172.385;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:32:30,2,0,0:30:1146:2,0,0:78,0,0:0,-2.22966,-96.0341,-9.0309,-96.6361,-103.048,-9.0309,-96.6361,-103.048,-103.048 0|0:30:24,0,0,6:24:929:0,0,6:0,0,221:-11.2146,-18.4393,-94.7665,-18.4393,-94.7665,-94.7665,0,-76.6991,-76.6991,-74.8929 0|0:16:15,1,0,0:15:586:1,0,0:38,0,0:0,-1.79543,-50.0615,-4.51545,-50.3625,-52.7749,-4.51545,-50.3625,-52.7749,-52.7749 0|0:11:9,0,2,0:9:351:0,2,0:0,76,0:-3.90334,-6.61261,-35.4732,0,-29.2421,-28.64,-6.61261,-35.4732,-29.2421,-35.4732 dDocent_Contig_3905 1 . N G 75.0157 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=4.60517;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=79;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:79:-7.49724,-0.60206,0 dDocent_Contig_3906 63 . T G 5267.77 . AB=0.720149;ABP=115.83;AC=4;AF=0.5;AN=8;AO=193;CIGAR=1X;DP=268;DPB=268;DPRA=0;EPP=413.464;EPPR=165.871;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.989637;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6793;QR=2734;RO=75;RPL=193;RPP=422.104;RPPR=165.871;RPR=0;RUN=1;SAF=192;SAP=413.464;SAR=1;SRF=75;SRP=165.871;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:124:31,93:31:1085:93:3208:-251.58,0,-60.6045 0/1:92:36,56:36:1370:56:1992:-151.84,0,-95.8836 0/1:34:5,29:5:177:29:1065:-85.9214,0,-6.03755 0/1:18:3,15:3:102:15:528:-42.4252,0,-4.09705 dDocent_Contig_3908 190 . T A 34.1187 . AB=0.142857;ABP=26.2761;AC=2;AF=0.25;AN=8;AO=3;CIGAR=1X;DP=112;DPB=112;DPRA=0.230769;EPP=9.52472;EPPR=239.701;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=123;QR=4391;RO=109;RPL=3;RPP=9.52472;RPPR=239.701;RPR=0;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=239.701;SRR=109;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:81:81,0:81:3271:0:0:0,-24.3834,-294.432 0/1:13:11,2:11:448:2:82:-3.86629,0,-36.7626 0/1:8:7,1:7:284:1:41:-1.68633,0,-23.5252 0/0:10:10,0:10:388:0:0:0,-3.0103,-35.2693 dDocent_Contig_3909 8 . A G 104.12 . AB=0.131579;ABP=92.6121;AC=1;AF=0.125;AN=8;AO=15;CIGAR=1X;DP=204;DPB=204;DPRA=1.3252;EPP=35.5824;EPPR=413.419;GTI=0;LEN=1;MEANALT=1;MQM=49.7333;MQMR=58.9259;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.756614;PAO=0;PQA=0;PQR=0;PRO=0;QA=575;QR=7224;RO=189;RPL=0;RPP=35.5824;RPPR=413.419;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=189;SRP=413.419;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:61:58,3:58:2224:3:116:0,-7.58042,-189.553 0/1:76:66,10:66:2522:10:383:-11.508,0,-204.033 0/0:41:41,0:41:1559:0:0:0,-12.3422,-140.329 0/0:26:24,2:24:919:2:76:0,-0.687226,-75.8875 dDocent_Contig_3910 9 . C A 147.034 . AB=0.08;ABP=41.3151;AC=0;AF=0;AN=8;AO=2;CIGAR=3M1X1M1I3M5I1M2X3M;DP=75;DPB=89.8571;DPRA=1.47059;EPP=7.35324;EPPR=92.2337;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=59.0222;NS=4;NUMALT=6;ODDS=0;PAIRED=1;PAIREDR=0.911111;PAO=0;PQA=0;PQR=0;PRO=0;QA=79;QR=1742;RO=45;RPL=0;RPP=7.35324;RPPR=100.727;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=44;SRP=92.2337;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:25:14,0,5,2,0,2,2:14:540:0,5,2,0,2,2:0,198,79,0,63,45:-12.1212,-16.3356,-60.6989,0,-44.3955,-42.8904,-9.82453,-54.1958,-37.891,-53.5937,-16.3356,-60.6989,-44.3955,-54.1958,-60.6989,-11.3412,-55.7012,-39.3985,-49.1983,-55.7012,-55.0991,-12.9165,-57.2648,-40.9641,-50.7626,-57.2648,-52.2687,-56.6627 0|0:20:13,0,0,0,2,0,0:13:501:0,0,0,2,0,0:0,0,0,65,0,0:-1.31415,-5.22754,-46.3731,-5.22754,-46.3731,-46.3731,-5.22754,-46.3731,-46.3731,-46.3731,0,-41.1328,-41.1328,-41.1328,-40.5308,-5.22754,-46.3731,-46.3731,-46.3731,-41.1328,-46.3731,-5.22754,-46.3731,-46.3731,-46.3731,-41.1328,-46.3731,-46.3731 0|0:17:12,0,0,0,0,0,0:12:465:0,0,0,0,0,0:0,0,0,0,0,0:0,-3.61236,-39.6365,-3.61236,-39.6365,-39.6365,-3.61236,-39.6365,-39.6365,-39.6365,-3.61236,-39.6365,-39.6365,-39.6365,-39.6365,-3.61236,-39.6365,-39.6365,-39.6365,-39.6365,-39.6365,-3.61236,-39.6365,-39.6365,-39.6365,-39.6365,-39.6365,-39.6365 0|0:13:6,2,0,0,0,0,0:6:236:2,0,0,0,0,0:79,0,0,0,0,0:-4.69463,0,-18.8103,-6.50081,-19.4123,-25.9134,-6.50081,-19.4123,-25.9134,-25.9134,-6.50081,-19.4123,-25.9134,-25.9134,-25.9134,-6.50081,-19.4123,-25.9134,-25.9134,-25.9134,-25.9134,-6.50081,-19.4123,-25.9134,-25.9134,-25.9134,-25.9134,-25.9134 dDocent_Contig_3911 73 . C G 243.374 . AB=0.354839;ABP=8.68415;AC=3;AF=0.375;AN=8;AO=11;CIGAR=1X;DP=39;DPB=39;DPRA=1.29167;EPP=26.8965;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=401;QR=1109;RO=28;RPL=11;RPP=26.8965;RPPR=63.8115;RPR=0;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:8:8,0:8:315:0:0:0,-2.40824,-28.7161 0/1:15:8,7:8:314:7:244:-17.7746,0,-24.1099 0/1:8:7,1:7:278:1:40:-1.58744,0,-22.9829 0/1:8:5,3:5:202:3:117:-8.50197,0,-16.1536 dDocent_Contig_3912 15 . T C 8551.42 . AB=0.229462;ABP=227.422;AC=4;AF=0.5;AN=8;AO=81;CIGAR=2X;DP=353;DPB=353;DPRA=0;EPP=178.9;EPPR=100.727;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=5.55112e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3232;QR=1814;RO=45;RPL=0;RPP=178.9;RPPR=100.727;RPR=81;RUN=1;SAF=81;SAP=178.9;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:109:18,30,61:18:722:30,61:1190,2475:-237.149,-144.628,-195.08,-38.4532,0,-79.5765 1|0:134:18,18,98:18:726:18,98:733,3955:-321.226,-266.176,-320.601,-0.628517,0,-30.9692 1|0:75:7,27,41:7:284:27,41:1064,1658:-198.679,-113.269,-128.563,-64.088,0,-75.1697 1|0:35:2,6,27:2:82:6,27:245,1094:-103.053,-83.4389,-88.4012,-13.4457,0,-12.0864 dDocent_Contig_3913 13 . A G 875.011 . AB=0.3875;ABP=11.8048;AC=1;AF=0.125;AN=8;AO=34;CIGAR=1X;DP=251;DPB=251;DPRA=0.596296;EPP=76.8404;EPPR=474.22;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1372;QR=8652;RO=217;RPL=0;RPP=76.8404;RPPR=474.22;RPR=34;RUN=1;SAF=34;SAP=76.8404;SAR=0;SRF=217;SRP=474.22;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:90:90,0:90:3601:0:0:0,-27.0927,-324.101 0/1:80:49,31:49:1939:31:1249:-88.598,0,-150.626 0/0:57:55,2:55:2176:2:82:0,-9.37903,-188.228 0/0:24:23,1:23:936:1:41:0,-3.13015,-80.4464 dDocent_Contig_3914 20 . C T 6397.27 . AB=0.287894;ABP=387.136;AC=4;AF=0.5;AN=8;AO=283;CIGAR=1X;DP=983;DPB=983;DPRA=0;EPP=525.706;EPPR=668.941;GTI=0;LEN=1;MEANALT=1.5;MQM=46.9435;MQMR=47.9511;NS=4;NUMALT=1;ODDS=0;PAIRED=0.95053;PAIREDR=0.83046;PAO=0;PQA=0;PQR=0;PRO=0;QA=11198;QR=27029;RO=696;RPL=0;RPP=617.537;RPPR=1514.36;RPR=283;RUN=1;SAF=272;SAP=525.706;SAR=11;SRF=579;SRP=668.941;SRR=117;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:284:196,85:196:7471:85:3371:-199.661,0,-489.725 0/1:324:237,86:237:9322:86:3434:-181.133,0,-693.078 0/1:261:187,74:187:7314:74:2900:-170.559,0,-541.912 0/1:114:76,38:76:2922:38:1493:-93.3634,0,-181.493 dDocent_Contig_3915 10 . G C 2324.89 . AB=0.52349;ABP=3.72441;AC=4;AF=0.5;AN=8;AO=78;CIGAR=1X;DP=149;DPB=149;DPRA=0;EPP=172.385;EPPR=157.185;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.987179;PAIREDR=0.971831;PAO=0;PQA=0;PQR=0;PRO=0;QA=3123;QR=2848;RO=71;RPL=0;RPP=172.385;RPPR=157.185;RPR=78;RUN=1;SAF=78;SAP=172.385;SAR=0;SRF=71;SRP=157.185;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:32:14,18:14:556:18:728:-56.2124,0,-40.746 0/1:36:18,18:18:722:18:690:-51.578,0,-54.4688 0/1:42:20,22:20:807:22:890:-67.7643,0,-60.3022 0/1:39:19,20:19:763:20:815:-61.924,0,-57.2513 dDocent_Contig_3916 16 . C T 136.152 . AB=0.155844;ABP=82.2267;AC=1;AF=0.125;AN=8;AO=13;CIGAR=1X;DP=177;DPB=177;DPRA=1.76562;EPP=31.2394;EPPR=359.132;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=448;QR=6404;RO=164;RPL=0;RPP=31.2394;RPPR=359.132;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=164;SRP=359.132;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:77:65,12:65:2578:12:414:-14.4111,0,-208.981 0/0:49:49,0:49:1917:0:0:0,-14.7505,-172.739 0/0:36:35,1:35:1319:1:34:0,-7.43817,-115.568 0/0:15:15,0:15:590:0:0:0,-4.51545,-53.4349 dDocent_Contig_3917 11 . A G 6277.26 . AB=0.478842;ABP=4.75618;AC=4;AF=0.5;AN=8;AO=215;CIGAR=2X;DP=449;DPB=449;DPRA=0;EPP=469.877;EPPR=511.135;GTI=0;LEN=1;MEANALT=1;MQM=59.6651;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=8547;QR=9319;RO=234;RPL=0;RPP=469.877;RPPR=511.135;RPR=215;RUN=1;SAF=215;SAP=469.877;SAR=0;SRF=234;SRP=511.135;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:155:97,58:97:3869:58:2302:-158.79,0,-301.555 0|1:115:69,46:69:2750:46:1830:-130.112,0,-213.001 0|1:117:53,64:53:2106:64:2568:-196.029,0,-154.51 0|1:62:15,47:15:594:47:1847:-147.785,0,-35.1362 dDocent_Contig_3918 40 . C G 6330.23 . AB=0.764331;ABP=98.2923;AC=6;AF=0.75;AN=8;AO=191;CIGAR=1X;DP=228;DPB=228;DPRA=0;EPP=417.762;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7574;QR=1448;RO=37;RPL=0;RPP=417.762;RPPR=83.3548;RPR=191;RUN=1;SAF=191;SAP=417.762;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:74:11,63:11:436:63:2510:-203.771,0,-17.3169 0/1:83:26,57:26:1012:57:2266:-179.12,0,-66.384 1/1:42:0,42:0:0:42:1673:-150.798,-12.6433,0 1/1:29:0,29:0:0:29:1125:-101.528,-8.72987,0 dDocent_Contig_3920 12 . T C 6975.12 . AB=0.174;ABP=464.561;AC=1;AF=0.125;AN=8;AO=87;CIGAR=3M1X;DP=500;DPB=504.5;DPRA=0;EPP=191.928;EPPR=335.246;GTI=0;LEN=1;MEANALT=3.25;MQM=59.2069;MQMR=60;NS=4;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3470;QR=5971;RO=153;RPL=0;RPP=191.928;RPPR=335.246;RPR=87;RUN=1;SAF=87;SAP=191.928;SAR=0;SRF=153;SRP=335.246;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:155:41,0,82,11,21:41:1588:0,82,11,21:0,3134,428,851:-244.8,-257.142,-387.588,0,-130.439,-105.755,-221.967,-352.413,-95.2646,-349.102,-187.013,-317.46,-60.309,-282.285,-311.139 0|0:159:64,3,64,0,28:64:2487:3,64,0,28:118,2412,0,1098:-178.375,-187.955,-391.409,0,-194.666,-185.085,-197.641,-392.312,-204.351,-401.997,-107.388,-302.061,-114.101,-311.746,-303.318 0|1:99:19,1,58,0,21:19:758:1,58,0,21:39,2194,0,854:-182.035,-184.555,-246.685,-7.92502,-67.1513,-52.8905,-187.755,-246.986,-70.3502,-250.185,-117.401,-176.635,0,-179.834,-173.513 0|0:87:29,5,34,2,17:29:1138:5,34,2,17:204,1293,78,667:-97.2921,-89.2384,-181.327,0,-76.8064,-83.3544,-99.6101,-176.42,-87.1778,-192.601,-51.1804,-127.992,-38.7509,-138.363,-139.657 dDocent_Contig_3921 7 . C A 7686.03 . AB=0.0359712;ABP=522.945;AC=0;AF=0;AN=8;AO=10;CIGAR=1X3M1X;DP=388;DPB=388;DPRA=0;EPP=24.725;EPPR=152.842;GTI=0;LEN=1;MEANALT=3;MQM=59.7;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=381;QR=2656;RO=69;RPL=0;RPP=24.725;RPPR=152.842;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=69;SRP=152.842;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:163:38,1,65,59:38:1471:1,65,59:39,2581,2341:-272.875,-281.109,-401.645,-71.8553,-189.485,-173.124,-91.6294,-209.259,0,-194.704 0|0:110:11,0,60,38:11:414:0,60,38:0,2404,1526:-286.584,-289.896,-323.814,-91.8478,-125.764,-107.702,-164.155,-198.073,0,-186.634 0|0:76:16,4,34,22:16:616:4,34,22:153,1347,889:-128.762,-121.025,-170.396,-22.7288,-60.7475,-63.0663,-60.284,-98.3053,0,-104.237 0|0:39:4,5,25,5:4:155:5,25,5:189,1000,205:-85.3666,-71.0832,-82.3105,-4.19792,-1.44712,-9.40449,-69.6484,-66.8935,0,-80.8764 dDocent_Contig_3922 35 . T A 57.8382 . AB=0.214286;ABP=12.937;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=61;DPB=61;DPRA=0.893617;EPP=9.52472;EPPR=128.956;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=55.6034;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.862069;PAO=0;PQA=0;PQR=0;PRO=0;QA=119;QR=2297;RO=58;RPL=0;RPP=9.52472;RPPR=128.956;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:23:23,0:23:915:0:0:0,-6.92369,-80.0373 0/0:19:19,0:19:746:0:0:0,-5.71957,-64.0192 0/1:14:11,3:11:435:3:119:-6.88059,0,-33.713 0/0:5:5,0:5:201:0:0:0,-1.50515,-18.4709 dDocent_Contig_3923 13 . A C 3287.01 . AB=0.588542;ABP=16.0844;AC=4;AF=0.5;AN=8;AO=113;CIGAR=1X;DP=192;DPB=192;DPRA=0;EPP=248.387;EPPR=174.557;GTI=0;LEN=1;MEANALT=1;MQM=52.5487;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.982301;PAIREDR=0.987342;PAO=0;PQA=0;PQR=0;PRO=0;QA=4564;QR=3129;RO=79;RPL=0;RPP=248.387;RPPR=174.557;RPR=113;RUN=1;SAF=113;SAP=248.387;SAR=0;SRF=79;SRP=174.557;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:44:25,19:25:994:19:772:-56.3975,0,-76.5035 0/1:61:22,39:22:872:39:1572:-110.141,0,-60.4263 0/1:58:23,35:23:900:35:1403:-102.181,0,-63.8486 0/1:29:9,20:9:363:20:817:-64.9714,0,-24.3042 dDocent_Contig_3924 21 . G T 5822.48 . AB=0.0681818;ABP=216.802;AC=0;AF=0;AN=8;AO=9;CIGAR=6M1X4M;DP=366;DPB=262.364;DPRA=0;EPP=22.5536;EPPR=202.786;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=361;QR=3594;RO=92;RPL=0;RPP=22.5536;RPPR=202.786;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=92;SRP=202.786;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:105:34,50,0,21:34:1331:50,0,21:2001,0,825:-151.556,0,-94.3819,-161.791,-109.433,-271.225,-93.943,-41.5844,-203.377,-197.055 0|0:132:35,65,9,23:35:1363:65,9,23:2551,361,913:-185.012,0,-92.4443,-165.802,-82.2665,-275.112,-120.392,-36.8597,-202.668,-225.49 0|0:79:10,49,0,20:10:384:49,0,20:1892,0,807:-177.932,-35.0243,-51.7863,-180.942,-66.5368,-212.462,-114.407,0,-145.929,-139.909 0|0:50:13,26,0,11:13:516:26,0,11:1032,0,424:-72.7382,0,-34.6578,-76.6516,-42.4845,-119.137,-41.8343,-7.67963,-84.3245,-81.0131 dDocent_Contig_3925 125 . C A 2313.93 . AB=0.691729;ABP=45.4765;AC=4;AF=0.5;AN=8;AO=92;CIGAR=1X1M1X;DP=133;DPB=133;DPRA=0;EPP=202.786;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3045;QR=1293;RO=39;RPL=0;RPP=202.786;RPPR=87.6977;RPR=92;RUN=1;SAF=0;SAP=202.786;SAR=92;SRF=0;SRP=87.6977;SRR=39;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:37:12,24:12:414:24:802:-61.3033,0,-26.405 0|1:41:4,37:4:138:37:1234:-99.0152,0,-0.418219 0|1:29:14,14:14:431:14:474:-34.4485,0,-30.5522 0|1:26:9,17:9:310:17:535:-40.6242,0,-20.4076 dDocent_Contig_3926 12 . T A 7246.39 . AB=0.656338;ABP=78.3757;AC=4;AF=0.5;AN=8;AO=233;CIGAR=1X;DP=355;DPB=355;DPRA=0;EPP=508.963;EPPR=267.93;GTI=0;LEN=1;MEANALT=1;MQM=58.9056;MQMR=60;NS=4;NUMALT=1;ODDS=2.77556e-17;PAIRED=0.982833;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=9381;QR=4941;RO=122;RPL=0;RPP=508.963;RPPR=267.93;RPR=233;RUN=1;SAF=233;SAP=508.963;SAR=0;SRF=122;SRP=267.93;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:80:31,49:31:1260:49:1957:-152.24,0,-89.5811 0/1:85:11,74:11:444:74:2974:-239.022,0,-14.7277 0/1:115:49,66:49:1978:66:2662:-199.82,0,-143.584 0/1:75:31,44:31:1259:44:1788:-138.547,0,-90.9977 dDocent_Contig_3927 44 . A T 245.812 . AB=0.154639;ABP=103.502;AC=1;AF=0.125;AN=8;AO=18;CIGAR=1X;DP=345;DPB=345;DPRA=0.666667;EPP=42.0968;EPPR=704.422;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=0.88685;PAO=0;PQA=0;PQR=0;PRO=0;QA=728;QR=13067;RO=327;RPL=0;RPP=42.0968;RPPR=704.422;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=327;SRP=713.082;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:152:152,0:152:6054:0:0:0,-45.7566,-544.629 0/1:97:82,15:82:3288:15:606:-25.6776,0,-266.773 0/0:41:38,3:38:1532:3:122:0,-0.969737,-126.744 0/0:55:55,0:55:2193:0:0:0,-16.5566,-197.542 dDocent_Contig_3928 137 . C T 282.218 . AB=0.161017;ABP=120.785;AC=3;AF=0.375;AN=8;AO=23;CIGAR=1X;DP=191;DPB=191;DPRA=0;EPP=52.9542;EPPR=367.818;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=883;QR=6640;RO=168;RPL=0;RPP=52.9542;RPPR=367.818;RPR=23;RUN=1;SAF=0;SAP=52.9542;SAR=23;SRF=0;SRP=367.818;SRR=168;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:37:34,3:34:1365:3:121:-0.142087,0,-111.969 0/0:73:69,4:69:2730:4:161:0,-7.10029,-230.943 0/1:54:44,10:44:1695:10:362:-16.653,0,-136.517 0/1:27:21,6:21:850:6:239:-13.7566,0,-68.6838 dDocent_Contig_3929 1 . N G 154.762 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=160;QR=0;RO=0;RPL=0;RPP=11.6962;RPPR=0;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1:0,1:0:0:1:38:-3.79727,-0.30103,0 1/1:3:0,3:0:0:3:122:-11.3725,-0.90309,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_3930 203 . G T 3039.73 . AB=0.356742;ABP=66.471;AC=4;AF=0.5;AN=8;AO=127;CIGAR=1X;DP=356;DPB=356;DPRA=0;EPP=278.787;EPPR=500.277;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4610;QR=8385;RO=229;RPL=127;RPP=278.787;RPPR=500.277;RPR=0;RUN=1;SAF=0;SAP=278.787;SAR=127;SRF=0;SRP=500.277;SRR=229;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:81:70,11:70:2567:11:405:-12.4138,0,-206.878 0/1:123:77,46:77:2842:46:1648:-111.573,0,-218.965 0/1:98:57,41:57:2094:41:1493:-105.159,0,-159.211 0/1:54:25,29:25:882:29:1064:-79.8168,0,-63.4296 dDocent_Contig_3931 107 . N A 187.884 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=6;CIGAR=1X;DP=6;DPB=6;DPRA=0;EPP=16.0391;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=198;QR=0;RO=0;RPL=0;RPP=16.0391;RPPR=0;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:5:0,5:0:0:5:164:-15.0838,-1.50515,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:1:0,1:0:0:1:34:-3.39891,-0.30103,0 dDocent_Contig_3932 20 . C T 191.967 . AB=0.158537;ABP=86.0559;AC=2;AF=0.25;AN=8;AO=15;CIGAR=1X;DP=312;DPB=312;DPRA=0;EPP=35.5824;EPPR=647.938;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=586;QR=11842;RO=297;RPL=0;RPP=35.5824;RPPR=647.938;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=297;SRP=647.938;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:120:119,1:119:4771:1:41:0,-32.029,-425.204 0/0:110:109,1:109:4313:1:41:0,-29.0187,-384.032 0/1:53:44,9:44:1770:9:359:-16.7187,0,-143.561 0/1:29:25,4:25:988:4:145:-4.6717,0,-80.4917 dDocent_Contig_3933 25 . T G 9545.45 . AB=0.87156;ABP=133.717;AC=7;AF=0.875;AN=8;AO=283;CIGAR=1X;DP=304;DPB=304;DPRA=0;EPP=617.537;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=11259;QR=831;RO=21;RPL=0;RPP=617.537;RPPR=48.6112;RPR=283;RUN=1;SAF=283;SAP=617.537;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:109:14,95:14:555:95:3769:-306.414,0,-17.4801 1/1:105:0,105:0:0:105:4175:-375.719,-31.6082,0 1/1:62:5,57:5:198:57:2265:-185.819,-0.466857,0 1/1:28:2,26:2:78:26:1050:-87.388,-1.02554,0 dDocent_Contig_3936 49 . A C 34.2973 . AB=0.121212;ABP=85.263;AC=1;AF=0.125;AN=8;AO=10;CIGAR=1X;DP=251;DPB=251;DPRA=1.32407;EPP=24.725;EPPR=526.335;GTI=0;LEN=1;MEANALT=1;MQM=40;MQMR=38.0456;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.995851;PAO=0;PQA=0;PQR=0;PRO=0;QA=345;QR=8310;RO=241;RPL=0;RPP=24.725;RPPR=526.335;RPR=10;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=526.335;SRR=241;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:35:35,0:35:1222:0:0:0,-10.536,-101.293 0/1:66:58,8:58:1992:8:276:-4.52648,0,-139.566 0/0:73:73,0:73:2545:0:0:0,-21.9752,-204.152 0/0:77:75,2:75:2551:2:69:0,-16.8301,-196.773 dDocent_Contig_3952 9 . A G 3425.21 . AB=0.147208;ABP=428.95;AC=1;AF=0.125;AN=8;AO=58;CIGAR=3M1X7M2X3M1X1M;DP=394;DPB=393.389;DPRA=0;EPP=128.956;EPPR=183.243;GTI=0;LEN=1;MEANALT=7.5;MQM=28.7414;MQMR=35.9759;NS=4;NUMALT=6;ODDS=0;PAIRED=0.344828;PAIREDR=0.915663;PAO=0;PQA=0;PQR=0;PRO=0;QA=1486;QR=3271;RO=83;RPL=0;RPP=128.956;RPPR=183.243;RPR=58;RUN=1;SAF=58;SAP=128.956;SAR=0;SRF=83;SRP=183.243;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:101:8,4,52,0,25,8,0:8:316:4,52,0,25,8,0:158,1559,0,585,312,0:-143.607,-133.08,-143.985,-27.4764,-26.6408,-23.9316,-146.015,-145.189,-39.5852,-158.124,-106.43,-105.599,0,-118.535,-111.01,-134.778,-133.95,-28.3484,-146.886,-107.301,-144.478,-146.015,-145.189,-39.5852,-158.124,-118.535,-146.886,-158.124 0|0:106:22,6,39,4,14,9,11:22:870:6,39,4,14,9,11:214,915,114,411,354,375:-56.3962,-46.3619,-107.633,0,-46.4234,-51.3369,-54.5073,-100.928,-54.5686,-116.378,-33.1917,-79.6155,-33.2627,-87.7597,-92.0558,-48.4065,-94.8276,-48.4743,-102.971,-81.6598,-108.772,-34.7451,-81.1693,-34.8107,-89.3135,-68.0005,-83.2131,-94.513 0|0:121:36,1,46,8,10,16,0:36:1411:1,46,8,10,16,0:10,1437,190,258,637,0:-99.3977,-109.889,-202.297,0,-92.3686,-78.8661,-96.6833,-189.044,-79.1644,-186.982,-91.7377,-184.099,-74.2192,-170.892,-181.434,-60.5205,-152.891,-42.9986,-139.683,-134.738,-148.42,-110.235,-202.598,-92.7135,-189.39,-184.445,-153.237,-202.944 0|0:66:17,0,20,3,9,9,0:17:674:0,20,3,9,9,0:0,680,93,232,363,0:-48.1097,-53.2273,-105.202,0,-51.9972,-45.9766,-46.0339,-98.0102,-44.8047,-97.1071,-36.2748,-88.2508,-35.0487,-81.0595,-85.5415,-30.681,-82.6616,-29.4536,-75.4697,-65.7119,-79.9523,-53.2273,-105.202,-51.9972,-98.0102,-88.2508,-82.6616,-105.202 dDocent_Contig_3956 20 . G A 4440.97 . AB=0.70098;ABP=74.5837;AC=4;AF=0.5;AN=8;AO=143;CIGAR=1X;DP=204;DPB=204;DPRA=0;EPP=313.531;EPPR=135.47;GTI=0;LEN=1;MEANALT=1;MQM=59.951;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5661;QR=2399;RO=61;RPL=0;RPP=313.531;RPPR=135.47;RPR=143;RUN=1;SAF=143;SAP=313.531;SAR=0;SRF=61;SRP=135.47;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:77:22,55:22:877:55:2165:-171.856,0,-56.0583 0/1:67:22,45:22:838:45:1788:-140.966,0,-55.5601 0/1:40:13,27:13:525:27:1074:-84.9048,0,-35.5555 0/1:20:4,16:4:159:16:634:-51.3597,0,-8.67135 dDocent_Contig_3957 11 . A G 51.8752 . AB=0.105263;ABP=131.584;AC=1;AF=0.125;AN=8;AO=10;CIGAR=1X;DP=402;DPB=402;DPRA=0.928339;EPP=3.0103;EPPR=854.227;GTI=0;LEN=1;MEANALT=1;MQM=57.6;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.928571;PAO=0;PQA=0;PQR=0;PRO=0;QA=384;QR=15627;RO=392;RPL=0;RPP=24.725;RPPR=854.227;RPR=10;RUN=1;SAF=5;SAP=3.0103;SAR=5;SRF=392;SRP=854.227;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:114:114,0:114:4539:0:0:0,-34.3174,-408.442 0/0:114:114,0:114:4575:0:0:0,-34.3174,-411.671 0/0:79:79,0:79:3132:0:0:0,-23.7814,-281.962 0/1:95:85,10:85:3381:10:384:-6.28443,0,-275.742 dDocent_Contig_3958 16 . C T 3765.5 . AB=0.670391;ABP=48.1502;AC=4;AF=0.5;AN=8;AO=120;CIGAR=1X;DP=179;DPB=179;DPRA=0;EPP=263.587;EPPR=131.127;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=0.983333;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4826;QR=2374;RO=59;RPL=0;RPP=263.587;RPPR=131.127;RPR=120;RUN=1;SAF=120;SAP=263.587;SAR=0;SRF=59;SRP=131.127;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:58:8,50:8:325:50:2014:-163.985,0,-12.1599 0/1:48:28,20:28:1131:20:807:-58.4957,0,-87.621 0/1:42:16,26:16:633:26:1048:-81.9638,0,-44.6604 0/1:31:7,24:7:285:24:957:-77.0945,0,-16.6925 dDocent_Contig_3959 26 . A C 13671.7 . AB=0.880503;ABP=202.963;AC=6;AF=0.75;AN=8;AO=408;CIGAR=1X;DP=437;DPB=437;DPRA=0;EPP=888.971;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.97549;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=16163;QR=1173;RO=29;RPL=0;RPP=888.971;RPPR=65.983;RPR=408;RUN=1;SAF=408;SAP=888.971;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:152:1,151:1:41:151:5942:-530.489,-41.662,0 0/1:113:11,102:11:441:102:4059:-331.278,0,-6.02915 1/1:126:9,117:9:366:117:4662:-386.2,-4.62462,0 0/1:46:8,38:8:325:38:1500:-121.393,0,-15.7723 dDocent_Contig_3961 34 . T C 30.7861 . AB=0.0285714;ABP=138.138;AC=2;AF=0.25;AN=8;AO=6;CIGAR=1X4M1X;DP=184;DPB=181.667;DPRA=1.89394;EPP=16.0391;EPPR=343.931;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=4;NUMALT=4;ODDS=0;PAIRED=0.833333;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=221;QR=6180;RO=157;RPL=0;RPP=16.0391;RPPR=343.931;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=157;SRP=343.931;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:55:48,3,0,0,4:48:1889:3,0,0,4:123,0,0,161:0,-4.29402,-158.767,-14.4494,-159.67,-169.824,-14.4494,-159.67,-169.824,-169.824,-1.18435,-146.4,-156.554,-156.554,-155.35 0|0:33:28,2,0,2,0:28:1116:2,0,2,0:81,0,80,0:0,-1.70509,-93.0999,-8.42884,-93.7019,-100.382,-1.79739,-87.111,-93.7912,-93.1892,-8.42884,-93.7019,-100.382,-93.7912,-100.382 0|1:70:61,6,0,0,2:61:2401:6,0,0,2:239,0,0,60:-1.35916,0,-195.741,-19.722,-197.548,-217.229,-19.722,-197.548,-217.229,-217.229,-14.9512,-192.758,-212.439,-212.439,-211.837 0|1:26:20,3,3,0,0:20:774:3,3,0,0:122,118,0,0:-4.04925,0,-62.665,-0.369985,-53.8608,-63.0235,-10.0698,-63.568,-63.9265,-73.6334,-10.0698,-63.568,-63.9265,-73.6334,-73.6334 dDocent_Contig_3962 36 . C G 8202.76 . AB=0.808824;ABP=59.3408;AC=7;AF=0.875;AN=8;AO=242;CIGAR=1X;DP=262;DPB=262;DPRA=0;EPP=528.507;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=9588;QR=757;RO=19;RPL=0;RPP=528.507;RPPR=44.2683;RPR=242;RUN=1;SAF=242;SAP=528.507;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:95:0,95:0:0:95:3735:-336.177,-28.5979,0 0/1:68:13,55:13:521:55:2196:-177.347,0,-26.7662 1/1:68:5,63:5:196:63:2504:-207.499,-2.45557,0 1/1:31:1,29:1:40:29:1153:-100.049,-5.43973,0 dDocent_Contig_3963 25 . A T 871.519 . AB=0.299145;ABP=44.0084;AC=1;AF=0.125;AN=8;AO=38;CIGAR=1X;DP=347;DPB=347;DPRA=0.971591;EPP=85.5263;EPPR=673.995;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.944984;PAO=0;PQA=0;PQR=0;PRO=0;QA=1492;QR=12169;RO=309;RPL=0;RPP=85.5263;RPPR=673.995;RPR=38;RUN=1;SAF=38;SAP=85.5263;SAR=0;SRF=309;SRP=673.995;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:89:89,0:89:3494:0:0:0,-26.7917,-314.52 0/1:117:82,35:82:3209:35:1369:-88.2488,0,-253.681 0/0:87:87,0:87:3449:0:0:0,-26.1896,-310.471 0/0:54:51,3:51:2017:3:123:0,-4.79083,-170.272 dDocent_Contig_3964 42 . A G 4080.44 . AB=0.726415;ABP=50.2091;AC=5;AF=0.625;AN=8;AO=130;CIGAR=1X;DP=161;DPB=161;DPRA=0;EPP=285.302;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5000;QR=1212;RO=31;RPL=0;RPP=285.302;RPPR=70.3259;RPR=130;RUN=1;SAF=130;SAP=285.302;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:42:17,25:17:657:25:972:-75.1433,0,-46.8213 1/1:55:2,53:2:80:53:2026:-174.976,-8.96486,0 0/1:41:8,33:8:315:33:1263:-101.608,0,-16.3734 0/1:23:4,19:4:160:19:739:-59.9084,0,-7.86011 dDocent_Contig_3965 14 . G C 5046.63 . AB=0.461749;ABP=7.66176;AC=4;AF=0.5;AN=8;AO=169;CIGAR=1X12M;DP=366;DPB=341.077;DPRA=0;EPP=369.989;EPPR=343.931;GTI=0;LEN=1;MEANALT=2.75;MQM=60;MQMR=59.9936;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6760;QR=6136;RO=157;RPL=0;RPP=369.989;RPPR=343.931;RPR=169;RUN=1;SAF=169;SAP=369.989;SAR=0;SRF=157;SRP=343.931;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:114:38,15,60:38:1482:15,60:590,2393:-185.625,-148.534,-265.833,0,-73.2829,-103.752 0|1:140:48,18,73:48:1891:18,73:705,2927:-226.698,-183.179,-333.329,0,-97.6033,-133.598 0|1:55:44,0,9:44:1707:0,9:0,357:-16.2199,-29.4653,-169.709,0,-140.321,-137.611 0|1:57:27,3,27:27:1056:3,27:118,1083:-81.1098,-79.5317,-165.446,0,-77.1138,-78.6929 dDocent_Contig_3966 80 . G A 1681.8 . AB=0.353535;ABP=39.9034;AC=4;AF=0.5;AN=8;AO=70;CIGAR=1X;DP=198;DPB=198;DPRA=0;EPP=155.013;EPPR=278.787;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2572;QR=4613;RO=127;RPL=70;RPP=155.013;RPPR=278.787;RPR=0;RUN=1;SAF=70;SAP=155.013;SAR=0;SRF=127;SRP=278.787;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:56:24,31:24:861:31:1130:-85.1211,0,-60.9204 0/1:64:48,16:48:1752:16:571:-32.4457,0,-138.691 0/1:45:29,16:29:1053:16:614:-42.0529,0,-81.534 0/1:33:26,7:26:947:7:257:-13.55,0,-75.6132 dDocent_Contig_3967 107 . N A 166.977 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=5;CIGAR=1X;DP=5;DPB=5;DPRA=0;EPP=13.8677;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=169;QR=0;RO=0;RPL=0;RPP=13.8677;RPPR=0;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:66:-6.26818,-0.60206,0 1/1:1:0,1:0:0:1:33:-3.29913,-0.30103,0 1/1:2:0,2:0:0:2:70:-6.6474,-0.60206,0 dDocent_Contig_3968 55 . T C 4498.78 . AB=0.680851;ABP=43.067;AC=5;AF=0.625;AN=8;AO=143;CIGAR=1X;DP=190;DPB=190;DPRA=0;EPP=313.531;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.944056;PAIREDR=0.957447;PAO=0;PQA=0;PQR=0;PRO=0;QA=5582;QR=1788;RO=47;RPL=143;RPP=313.531;RPPR=105.07;RPR=0;RUN=1;SAF=143;SAP=313.531;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:54:17,37:17:642:37:1450:-114.496,0,-41.847 0/1:52:17,35:17:648:35:1356:-106.648,0,-42.981 1/1:49:2,47:2:79:47:1820:-156.52,-7.25323,0 0/1:35:11,24:11:419:24:956:-75.8058,0,-27.5228 dDocent_Contig_3969 151 . T C 80.4269 . AB=0.25;ABP=11.6962;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=73;DPB=73;DPRA=0.825;EPP=13.8677;EPPR=150.67;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=192;QR=2682;RO=68;RPL=0;RPP=13.8677;RPPR=150.67;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=150.67;SRR=68;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:19:19,0:19:740:0:0:0,-5.71957,-66.9231 0/0:21:21,0:21:813:0:0:0,-6.32163,-73.4882 0/0:17:16,1:16:642:1:41:0,-1.02294,-54.0181 0/1:16:12,4:12:487:4:151:-9.13919,0,-39.3652 dDocent_Contig_3970 57 . A C 343.615 . AB=0.188889;ABP=78.674;AC=1;AF=0.125;AN=8;AO=18;CIGAR=1X;DP=216;DPB=216;DPRA=1.7;EPP=42.0968;EPPR=432.962;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=729;QR=7710;RO=198;RPL=18;RPP=42.0968;RPPR=432.962;RPR=0;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=198;SRP=432.962;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:90:73,17:73:2865:17:688:-35.1574,0,-230.88 0/0:67:67,0:67:2590:0:0:0,-20.169,-233.245 0/0:46:45,1:45:1743:1:41:0,-9.75281,-153.001 0/0:13:13,0:13:512:0:0:0,-3.91339,-46.4253 dDocent_Contig_3971 107 . N T 945.778 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=30;CIGAR=1X;DP=30;DPB=30;DPRA=0;EPP=68.1545;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1033;QR=0;RO=0;RPL=0;RPP=68.1545;RPPR=0;RPR=30;RUN=1;SAF=0;SAP=68.1545;SAR=30;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:15:0,15:0:0:15:512:-46.4044,-4.51545,0 1/1:1:0,1:0:0:1:35:-3.49863,-0.30103,0 ./.:.:.:.:.:.:.:. 1/1:14:0,14:0:0:14:486:-44.0705,-4.21442,0 dDocent_Contig_3972 114 . A C 4029.18 . AB=0.530945;ABP=5.56373;AC=4;AF=0.5;AN=8;AO=163;CIGAR=1X;DP=307;DPB=307;DPRA=0;EPP=356.96;EPPR=315.702;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5546;QR=5025;RO=144;RPL=0;RPP=356.96;RPPR=315.702;RPR=163;RUN=1;SAF=0;SAP=356.96;SAR=163;SRF=0;SRP=315.702;SRR=144;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:110:55,55:55:1914:55:1850:-133.664,0,-139.42 0/1:81:47,34:47:1667:34:1151:-79.5087,0,-125.935 0/1:76:28,48:28:963:48:1650:-125.912,0,-64.1013 0/1:40:14,26:14:481:26:895:-68.8232,0,-31.576 dDocent_Contig_3973 38 . A G 161.302 . AB=0.28;ABP=13.5202;AC=1;AF=0.125;AN=8;AO=10;CIGAR=1X;DP=149;DPB=149;DPRA=1.06944;EPP=24.725;EPPR=304.845;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=394;QR=5535;RO=139;RPL=0;RPP=24.725;RPPR=304.845;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=139;SRP=304.845;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:52:49,3:49:1920:3:123:0,-4.18877,-161.52 0/0:52:52,0:52:2096:0:0:0,-15.6536,-188.815 0/0:20:20,0:20:809:0:0:0,-6.0206,-73.1261 0/1:25:18,7:18:710:7:271:-17.2272,0,-56.6999 dDocent_Contig_3974 59 . A T 7096.3 . AB=0.639706;ABP=49.1222;AC=5;AF=0.625;AN=8;AO=221;CIGAR=1X;DP=319;DPB=319;DPRA=0;EPP=482.906;EPPR=215.815;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=8827;QR=3884;RO=98;RPL=221;RPP=482.906;RPPR=215.815;RPR=0;RUN=1;SAF=221;SAP=482.906;SAR=0;SRF=98;SRP=215.815;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:47:0,47:0:0:47:1907:-171.824,-14.1484,0 0/1:128:54,74:54:2141:74:2935:-225.719,0,-154.339 0/1:100:34,66:34:1348:66:2641:-207.707,0,-91.4779 0/1:44:10,34:10:395:34:1344:-107.972,0,-22.6617 dDocent_Contig_3975 28 . G T 304.837 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=47;CIGAR=1X;DP=47;DPB=47;DPRA=0;EPP=105.07;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=7;MQMR=0;NS=4;NUMALT=1;ODDS=1.35525e-20;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1879;QR=0;RO=0;RPL=0;RPP=105.07;RPPR=0;RPR=47;RUN=1;SAF=47;SAP=105.07;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:10:0,10:0:0:10:393:-6.36772,-3.0103,0 1/1:14:0,14:0:0:14:555:-8.88721,-4.21442,0 1/1:15:0,15:0:0:15:610:-9.51796,-4.51545,0 1/1:8:0,8:0:0:8:321:-5.10872,-2.40824,0 dDocent_Contig_3976 187 . A T 594.151 . AB=0.208333;ABP=109.412;AC=3;AF=0.375;AN=8;AO=31;CIGAR=1X;DP=182;DPB=182;DPRA=0;EPP=70.3259;EPPR=330.903;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1208;QR=5939;RO=151;RPL=31;RPP=70.3259;RPPR=330.903;RPR=0;RUN=1;SAF=0;SAP=70.3259;SAR=31;SRF=0;SRP=330.903;SRR=151;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:58:47,11:47:1874:11:422:-20.8662,0,-151.398 0/1:55:41,14:41:1626:14:554:-33.6441,0,-130.013 0/0:38:37,1:37:1404:1:38:0,-7.64187,-122.806 0/1:31:26,5:26:1035:5:194:-8.4966,0,-84.107 dDocent_Contig_3977 30 . A G 3359.15 . AB=0.625698;ABP=27.5758;AC=4;AF=0.5;AN=8;AO=112;CIGAR=1X;DP=179;DPB=179;DPRA=0;EPP=246.215;EPPR=146.327;GTI=0;LEN=1;MEANALT=1.25;MQM=58.375;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=0.9375;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4420;QR=2612;RO=66;RPL=0;RPP=246.215;RPPR=146.327;RPR=112;RUN=1;SAF=112;SAP=246.215;SAR=0;SRF=66;SRP=146.327;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:69:16,53:16:613:53:2090:-166.259,0,-34.7261 0/1:50:29,21:29:1145:21:836:-60.0107,0,-88.2813 0/1:42:16,26:16:649:26:1014:-76.5089,0,-46.1004 0/1:18:5,12:5:205:12:480:-38.1259,0,-13.3993 dDocent_Contig_3978 29 . G T 70.9604 . AB=0.1;ABP=225.369;AC=3;AF=0.375;AN=8;AO=16;CIGAR=1X;DP=195;DPB=195;DPRA=1.52381;EPP=37.7539;EPPR=391.704;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=640;QR=7048;RO=179;RPL=0;RPP=37.7539;RPPR=391.704;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=179;SRP=391.704;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:74:67,7:67:2650:7:279:-3.20456,0,-216.351 0/1:54:48,6:48:1892:6:243:-5.99256,0,-154.232 0/0:35:35,0:35:1378:0:0:0,-10.536,-124.272 0/1:32:29,3:29:1128:3:118:-1.36955,0,-92.1594 dDocent_Contig_3979 14 . C A 2143.4 . AB=0.0625;ABP=189.214;AC=2;AF=0.25;AN=8;AO=7;CIGAR=3M2X;DP=131;DPB=131.8;DPRA=0;EPP=18.2106;EPPR=74.6689;GTI=0;LEN=1;MEANALT=4.5;MQM=51;MQMR=60;NS=4;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=276;QR=1324;RO=33;RPL=0;RPP=18.2106;RPPR=74.6689;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:52:15,1,11,4,20:15:605:1,11,4,20:36,439,163,789:-60.2426,-61.8321,-111.406,-30.6512,-77.5997,-77.2142,-51.432,-98.3818,-67.2006,-100.104,0,-46.9541,-15.7761,-36.554,-43.8592 0|0:60:14,3,1,3,39:14:558:3,1,3,39:118,39,113,1567:-124.749,-119.935,-164.982,-125.778,-162.7,-171.427,-119.764,-156.685,-162.528,-164.81,0,-36.9404,-42.7814,-36.7679,-34.2262 1|0:15:4,0,6,0,5:4:161:0,6,0,5:0,242,0,203:-21.2992,-22.5034,-35.7744,-3.43153,-16.6995,-14.8934,-22.5034,-35.7744,-16.6995,-35.7744,-5.79715,-19.0724,0,-19.0724,-17.5672 1|0:4:0,0,2,0,2:0:0:0,2,0,2:0,81,0,77:-13.0397,-13.0397,-13.0397,-6.69944,-6.69944,-6.09738,-13.0397,-13.0397,-6.69944,-13.0397,-6.72522,-6.72522,0,-6.72522,-6.12316 dDocent_Contig_3980 7 . C A 178.048 . AB=0.166667;ABP=66.7068;AC=1;AF=0.125;AN=8;AO=18;CIGAR=1X2M1X2M3D7M1X4M5I1M1X1M1X;DP=224;DPB=225.84;DPRA=0;EPP=42.0968;EPPR=435.133;GTI=0;LEN=1;MEANALT=2.75;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=686;QR=7781;RO=199;RPL=0;RPP=42.0968;RPPR=435.133;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=199;SRP=435.133;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:80:76,3:76:2981:3:117:0,-13.25,-257.516 0|1:66:52,11:52:2044:11:420:-18.9017,0,-164.944 0|0:53:48,3:48:1869:3:110:0,-5.33685,-158.254 0|0:25:23,1:23:887:1:39:0,-3.72771,-76.2388 dDocent_Contig_3982 19 . G A 123.302 . AB=0.2;ABP=26.4622;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=83;DPB=83;DPRA=1.69811;EPP=16.0391;EPPR=170.214;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=242;QR=3045;RO=77;RPL=0;RPP=16.0391;RPPR=170.214;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=77;SRP=170.214;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:24,6:24:945:6:242:-13.126,0,-76.3215 0/0:28:28,0:28:1112:0:0:0,-8.42884,-100.364 0/0:13:13,0:13:518:0:0:0,-3.91339,-46.9645 0/0:12:12,0:12:470:0:0:0,-3.61236,-42.6479 dDocent_Contig_3983 43 . C T 2898.3 . AB=0.385185;ABP=33.9256;AC=4;AF=0.5;AN=8;AO=104;CIGAR=1X;DP=270;DPB=270;DPRA=0;EPP=228.843;EPPR=363.475;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=0.96988;PAO=0;PQA=0;PQR=0;PRO=0;QA=4166;QR=6566;RO=166;RPL=0;RPP=228.843;RPPR=363.475;RPR=104;RUN=1;SAF=104;SAP=228.843;SAR=0;SRF=166;SRP=363.475;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:118:82,36:82:3289:36:1429:-93.3368,0,-260.543 0/1:46:22,24:22:834:24:962:-73.0308,0,-61.514 0/1:60:37,23:37:1459:23:936:-66.4792,0,-113.498 0/1:46:25,21:25:984:21:839:-61.9729,0,-75.0111 dDocent_Contig_3984 84 . G T 1106.92 . AB=0.365591;ABP=17.6035;AC=5;AF=0.625;AN=8;AO=45;CIGAR=1X;DP=104;DPB=104;DPRA=0;EPP=100.727;EPPR=131.127;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1566;QR=2017;RO=59;RPL=45;RPP=100.727;RPPR=131.127;RPR=0;RUN=1;SAF=45;SAP=100.727;SAR=0;SRF=59;SRP=131.127;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:35:25,10:25:850:10:355:-21.7547,0,-66.2723 0/1:35:28,7:28:958:7:246:-11.9459,0,-75.9933 0/1:23:6,17:6:209:17:571:-44.7817,0,-12.2264 1/1:11:0,11:0:0:11:394:-35.8016,-3.31133,0 dDocent_Contig_3985 36 . C G 344.932 . AB=0.186275;ABP=90.2098;AC=3;AF=0.375;AN=8;AO=23;CIGAR=1X;DP=161;DPB=161;DPRA=0;EPP=52.9542;EPPR=302.673;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=911;QR=5524;RO=138;RPL=0;RPP=52.9542;RPPR=302.673;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=138;SRP=302.673;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:66:53,13:53:2108:13:522:-27.4594,0,-170.02 0/0:59:55,4:55:2205:4:159:0,-3.06881,-183.929 0/1:17:15,2:15:611:2:81:-2.56822,0,-50.21 0/1:19:15,4:15:600:4:149:-8.05003,0,-48.618 dDocent_Contig_3986 26 . G A 111.433 . AB=0.238095;ABP=15.5221;AC=1;AF=0.125;AN=8;AO=10;CIGAR=1X;DP=122;DPB=122;DPRA=2.20833;EPP=24.725;EPPR=246.215;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=404;QR=4469;RO=112;RPL=0;RPP=24.725;RPPR=246.215;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=112;SRP=246.215;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:36:34,2:34:1359:2:79:0,-3.33984,-115.063 0/0:16:16,0:16:641:0:0:0,-4.81648,-58.0236 0/0:49:46,3:46:1848:3:123:0,-3.28568,-155.059 0/1:21:16,5:16:621:5:202:-12.2402,0,-49.9002 dDocent_Contig_3987 16 . G T 163.241 . AB=0.136364;ABP=104.082;AC=1;AF=0.125;AN=8;AO=25;CIGAR=1X;DP=396;DPB=396;DPRA=2.04615;EPP=57.2971;EPPR=808.627;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.997305;PAO=0;PQA=0;PQR=0;PRO=0;QA=1011;QR=14758;RO=371;RPL=0;RPP=57.2971;RPPR=808.627;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=371;SRP=808.627;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:178:165,13:165:6585:13:527:0,-5.80621,-544.605 0/1:88:76,12:76:3026:12:484:-17.421,0,-245.932 0/0:68:68,0:68:2663:0:0:0,-20.47,-239.809 0/0:62:62,0:62:2484:0:0:0,-18.6639,-223.696 dDocent_Contig_3989 25 . G A 472.473 . AB=0.22549;ABP=69.7724;AC=4;AF=0.5;AN=8;AO=23;CIGAR=1X;DP=102;DPB=102;DPRA=0;EPP=52.9542;EPPR=174.557;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=905;QR=3157;RO=79;RPL=0;RPP=52.9542;RPPR=174.557;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=79;SRP=174.557;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:39:34,5:34:1365:5:196:-6.27413,0,-111.368 0/1:23:12,11:12:490:11:429:-32.0356,0,-37.5274 0/1:27:22,5:22:860:5:201:-10.3427,0,-69.5796 0/1:13:11,2:11:442:2:79:-3.58385,0,-36.2215 dDocent_Contig_3990 14 . A G 389.261 . AB=0.326531;ABP=15.8176;AC=2;AF=0.25;AN=8;AO=19;CIGAR=1X;DP=102;DPB=102;DPRA=3.91667;EPP=44.2683;EPPR=183.243;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=736;QR=3309;RO=83;RPL=0;RPP=44.2683;RPPR=183.243;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=83;SRP=183.243;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:34:20,14:20:800:14:541:-38.7882,0,-62.0818 0/1:15:13,2:13:521:2:72:-2.31887,0,-42.7214 0/0:45:42,3:42:1665:3:123:0,-2.08156,-138.608 0/0:8:8,0:8:323:0:0:0,-2.40824,-29.4386 dDocent_Contig_3991 7 . A C 4404.54 . AB=0.291139;ABP=242.477;AC=4;AF=0.5;AN=8;AO=184;CIGAR=1X;DP=632;DPB=632;DPRA=0;EPP=402.561;EPPR=975.83;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.991071;PAO=0;PQA=0;PQR=0;PRO=0;QA=7052;QR=17119;RO=448;RPL=0;RPP=402.561;RPPR=975.83;RPR=184;RUN=1;SAF=184;SAP=402.561;SAR=0;SRF=448;SRP=975.83;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:196:130,66:130:4956:66:2530:-168.897,0,-387.068 0/1:226:158,68:158:6046:68:2590:-165.257,0,-476.062 0/1:149:110,39:110:4193:39:1510:-91.3193,0,-332.601 0/1:61:50,11:50:1924:11:422:-19.9701,0,-155.041 dDocent_Contig_3992 51 . G T 8276.24 . AB=0.595652;ABP=39.5666;AC=4;AF=0.5;AN=8;AO=274;CIGAR=1X;DP=460;DPB=460;DPRA=0;EPP=597.994;EPPR=406.904;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=10784;QR=7158;RO=186;RPL=274;RPP=597.994;RPPR=406.904;RPR=0;RUN=1;SAF=274;SAP=597.994;SAR=0;SRF=186;SRP=406.904;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:170:72,98:72:2770:98:3874:-297.504,0,-198.256 0/1:88:34,54:34:1275:54:2134:-165.758,0,-88.5278 0/1:139:55,84:55:2140:84:3279:-253.343,0,-150.951 0/1:63:25,38:25:973:38:1497:-116.009,0,-68.9032 dDocent_Contig_3993 91 . A G 4037 . AB=0.75;ABP=59.4686;AC=5;AF=0.625;AN=8;AO=144;CIGAR=1X;DP=170;DPB=170;DPRA=0;EPP=315.702;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4860;QR=873;RO=26;RPL=144;RPP=315.702;RPPR=59.4686;RPR=0;RUN=1;SAF=144;SAP=315.702;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:47:13,34:13:420:34:1155:-90.1039,0,-23.9611 1/1:66:0,66:0:0:66:2231:-201.06,-19.868,0 0/1:34:8,26:8:279:26:859:-67.3791,0,-15.214 0/1:23:5,18:5:174:18:615:-48.7485,0,-9.07826 dDocent_Contig_3994 39 . A T 2682.55 . AB=0.734043;ABP=47.7334;AC=5;AF=0.625;AN=8;AO=84;CIGAR=1X;DP=109;DPB=109;DPRA=0;EPP=185.414;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3321;QR=1007;RO=25;RPL=0;RPP=185.414;RPPR=57.2971;RPR=84;RUN=1;SAF=84;SAP=185.414;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:7,24:7:285:24:958:-77.1894,0,-16.6923 0/1:49:14,35:14:561:35:1385:-110.16,0,-36.083 0/1:14:4,10:4:161:10:390:-31.2413,0,-10.6611 1/1:15:0,15:0:0:15:588:-53.2563,-4.51545,0 dDocent_Contig_3995 36 . G T 474.101 . AB=0.253012;ABP=46.9892;AC=3;AF=0.375;AN=8;AO=24;CIGAR=1X;DP=128;DPB=128;DPRA=0;EPP=55.1256;EPPR=228.843;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=947;QR=4042;RO=104;RPL=0;RPP=55.1256;RPPR=228.843;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=104;SRP=228.843;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:26,5:26:1012:5:200:-9.0471,0,-82.0502 0/0:45:42,3:42:1618:3:115:0,-2.82396,-135.139 0/1:27:19,8:19:747:8:310:-20.1316,0,-59.429 0/1:25:17,8:17:665:8:322:-21.8232,0,-52.6589 dDocent_Contig_3996 26 . A G 1803.32 . AB=0.288;ABP=100.605;AC=4;AF=0.5;AN=8;AO=72;CIGAR=1X;DP=250;DPB=250;DPRA=0;EPP=159.356;EPPR=389.532;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2881;QR=7107;RO=178;RPL=0;RPP=159.356;RPPR=389.532;RPR=72;RUN=1;SAF=72;SAP=159.356;SAR=0;SRF=178;SRP=389.532;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:61:45,16:45:1798:16:650:-40.469,0,-143.672 0/1:65:41,24:41:1640:24:963:-67.4015,0,-128.264 0/1:77:57,20:57:2288:20:792:-48.4106,0,-182.901 0/1:47:35,12:35:1381:12:476:-29.0405,0,-110.398 dDocent_Contig_3997 43 . G A 9900.01 . AB=0.775811;ABP=227.005;AC=5;AF=0.625;AN=8;AO=318;CIGAR=1X;DP=399;DPB=399;DPRA=0;EPP=693.539;EPPR=178.9;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=12367;QR=3088;RO=81;RPL=0;RPP=693.539;RPPR=178.9;RPR=318;RUN=1;SAF=318;SAP=693.539;SAR=0;SRF=81;SRP=178.9;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:131:30,101:30:1140:101:3934:-314.671,0,-63.4512 0/1:176:38,138:38:1440:138:5341:-427.616,0,-76.8757 1/1:60:5,55:5:194:55:2165:-177.201,-0.229255,0 0/1:32:8,24:8:314:24:927:-74.1013,0,-18.9927 dDocent_Contig_3998 1 . N G 74.0762 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=4.60517;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=78;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:78:-7.4033,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_3999 20 . T G 7068.88 . AB=0.849206;ABP=136.47;AC=6;AF=0.75;AN=8;AO=209;CIGAR=1X;DP=228;DPB=228;DPRA=0;EPP=456.848;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=8292;QR=758;RO=19;RPL=0;RPP=456.848;RPPR=44.2683;RPR=209;RUN=1;SAF=209;SAP=456.848;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:42:0,42:0:0:42:1679:-151.332,-12.6433,0 1/1:60:0,60:0:0:60:2364:-212.917,-18.0618,0 0/1:85:12,73:12:480:73:2879:-233.618,0,-17.9633 0/1:41:7,34:7:278:34:1370:-111.214,0,-13.0479 dDocent_Contig_4000 65 . G A 116.831 . AB=0.222222;ABP=21.1059;AC=2;AF=0.25;AN=8;AO=6;CIGAR=1X;DP=99;DPB=99;DPRA=0.375;EPP=16.0391;EPPR=204.957;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=236;QR=3722;RO=93;RPL=6;RPP=16.0391;RPPR=204.957;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=93;SRP=204.957;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:51:51,0:51:2024:0:0:0,-15.3525,-182.354 0/0:21:21,0:21:850:0:0:0,-6.32163,-76.8115 0/1:14:11,3:11:447:3:120:-6.97289,0,-36.3711 0/1:13:10,3:10:401:3:116:-6.90401,0,-32.5361 dDocent_Contig_4001 167 . G A 528.511 . AB=0.475;ABP=3.22745;AC=2;AF=0.25;AN=8;AO=19;CIGAR=1X;DP=54;DPB=54;DPRA=2.85714;EPP=44.2683;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=737;QR=1371;RO=35;RPL=19;RPP=44.2683;RPPR=79.0118;RPR=0;RUN=1;SAF=0;SAP=44.2683;SAR=19;SRF=0;SRP=79.0118;SRR=35;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:33:15,18:15:587:18:697:-53.1226,0,-43.2321 0/0:6:6,0:6:239:0:0:0,-1.80618,-21.885 0/0:8:8,0:8:306:0:0:0,-2.40824,-27.895 0/1:7:6,1:6:239:1:40:-1.88847,0,-19.778 dDocent_Contig_4002 25 . T G 3448.57 . AB=0.669725;ABP=30.2832;AC=5;AF=0.625;AN=8;AO=108;CIGAR=1X;DP=147;DPB=147;DPRA=0;EPP=237.529;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4350;QR=1578;RO=39;RPL=0;RPP=237.529;RPPR=87.6977;RPR=108;RUN=1;SAF=108;SAP=237.529;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:9,18:9:364:18:722:-57.179,0,-24.9966 0/1:37:17,20:17:688:20:788:-60.0969,0,-51.1106 1/1:38:3,35:3:122:35:1413:-116.042,-0.0666476,0 0/1:45:10,35:10:404:35:1427:-115.128,0,-23.1726 dDocent_Contig_4003 24 . G C 35.5536 . AB=0.166667;ABP=20.3821;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=152;DPB=152;DPRA=0.67033;EPP=11.6962;EPPR=212.195;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.904762;PAO=0;PQA=0;PQR=0;PRO=0;QA=118;QR=5722;RO=147;RPL=0;RPP=11.6962;RPPR=322.217;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=133;SRP=212.195;SRR=14;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:56:56,0:56:2185:0:0:0,-16.8577,-196.841 0/0:35:34,0:34:1348:0:0:0,-10.235,-121.187 0/0:43:42,1:42:1599:1:10:0,-11.9443,-143.156 0/1:18:15,3:15:590:3:108:-4.65215,0,-48.0186 dDocent_Contig_4004 21 . G A 2893.26 . AB=0.626667;ABP=23.9143;AC=4;AF=0.5;AN=8;AO=94;CIGAR=1X3M;DP=150;DPB=150;DPRA=0;EPP=198.535;EPPR=88.4369;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=1.38778e-17;PAIRED=0.93617;PAIREDR=0.914894;PAO=0;PQA=0;PQR=0;PRO=0;QA=3737;QR=1832;RO=47;RPL=0;RPP=207.129;RPPR=105.07;RPR=94;RUN=1;SAF=93;SAP=198.535;SAR=1;SRF=45;SRP=88.4369;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:32:13,0,0,19:13:502:0,0,19:0,0,763:-59.3563,-63.2697,-104.487,-63.2697,-104.487,-104.487,0,-41.6093,-41.6093,-35.8897 0|1:57:14,5,0,38:14:546:5,0,38:190,0,1509:-120.024,-108.663,-152.032,-124.238,-153.537,-169.113,0,-29.3088,-44.8832,-33.4441 0|1:43:12,0,0,31:12:468:0,0,31:0,0,1219:-97.0391,-100.651,-139.116,-100.651,-139.116,-139.116,0,-38.8555,-38.8555,-29.5236 0|1:18:8,0,4,6:8:316:0,4,6:0,164,246:-17.8962,-20.3045,-46.3005,-6.76816,-32.7622,-31.5581,0,-25.9927,-12.4514,-24.1865 dDocent_Contig_4005 12 . A C 339.168 . AB=0.114198;ABP=421.89;AC=2;AF=0.25;AN=8;AO=54;CIGAR=1X;DP=622;DPB=622;DPRA=0;EPP=120.27;EPPR=1234.24;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2140;QR=22451;RO=567;RPL=0;RPP=120.27;RPPR=1234.24;RPR=54;RUN=1;SAF=54;SAP=120.27;SAR=0;SRF=567;SRP=1234.24;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:209:199,10:199:7862:10:383:0,-28.1013,-672.366 0/1:196:175,20:175:6953:20:801:-13.2979,0,-566.356 0/1:128:111,17:111:4353:17:678:-22.8125,0,-353.211 0/0:89:82,7:82:3283:7:278:0,-1.40151,-270.134 dDocent_Contig_4006 1 . N G 48.3899 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=36.5;MQMR=0;NS=1;NUMALT=1;ODDS=4.60517;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=68;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:68:-4.83466,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_4008 98 . N T 153.006 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=5;CIGAR=4X;DP=5;DPB=15.5;DPRA=0;EPP=3.44459;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0.6;PAIREDR=0;PAO=20;PQA=508;PQR=0;PRO=0;QA=166;QR=0;RO=0;RPL=5;RPP=13.8677;RPPR=0;RPR=0;RUN=1;SAF=3;SAP=3.44459;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:1:0,1:0:0:1:38:-3.42433,-0.30103,0 .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. 1|1:4:0,4:0:0:4:128:-11.5703,-1.20412,0 dDocent_Contig_4009 19 . G A 68.9493 . AB=0.14;ABP=59.2949;AC=2;AF=0.25;AN=8;AO=10;CIGAR=1X;DP=99;DPB=99;DPRA=3.79167;EPP=24.725;EPPR=196.271;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=380;QR=3515;RO=89;RPL=0;RPP=24.725;RPPR=196.271;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=89;SRP=196.271;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:31,5:31:1232:5:179:-5.61619,0,-100.318 0/0:41:38,3:38:1486:3:120:0,-1.15433,-122.799 0/1:14:12,2:12:484:2:81:-3.47131,0,-39.6976 0/0:8:8,0:8:313:0:0:0,-2.40824,-28.5309 dDocent_Contig_4010 19 . C T 253.212 . AB=0.322581;ABP=11.486;AC=1;AF=0.125;AN=8;AO=10;CIGAR=1X;DP=125;DPB=125;DPRA=0.989362;EPP=24.725;EPPR=252.73;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=390;QR=4499;RO=115;RPL=0;RPP=24.725;RPPR=252.73;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=115;SRP=252.73;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:21,10:21:816:10:390:-26.1171,0,-64.4274 0/0:68:68,0:68:2678:0:0:0,-20.47,-241.158 0/0:13:13,0:13:514:0:0:0,-3.91339,-46.6072 0/0:13:13,0:13:491:0:0:0,-3.91339,-44.5256 dDocent_Contig_4011 13 . T C 272.158 . AB=0.4;ABP=5.18177;AC=1;AF=0.125;AN=8;AO=10;CIGAR=1X;DP=84;DPB=84;DPRA=1.27119;EPP=24.725;EPPR=163.699;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=391;QR=2990;RO=74;RPL=0;RPP=24.725;RPPR=163.699;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=74;SRP=163.699;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:15,10:15:605:10:391:-28.0117,0,-47.2617 0/0:28:28,0:28:1133:0:0:0,-8.42884,-102.25 0/0:19:19,0:19:770:0:0:0,-5.71957,-69.6203 0/0:12:12,0:12:482:0:0:0,-3.61236,-43.7309 dDocent_Contig_4012 93 . G C 1032.1 . AB=0.174757;ABP=97.6485;AC=1;AF=0.125;AN=8;AO=18;CIGAR=1X2M1X;DP=168;DPB=168;DPRA=0;EPP=42.0968;EPPR=248.387;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=1.38778e-17;PAIRED=0.611111;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=621;QR=3915;RO=113;RPL=18;RPP=42.0968;RPPR=248.387;RPR=0;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=113;SRP=248.387;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:65:38,0,27:38:1323:0,27:0,931:-64.5368,-75.9759,-183.563,0,-107.933,-99.8055 0|1:66:53,13,0:53:1837:13,0:459,0:-21.7774,0,-145.743,-37.732,-149.657,-187.037 0|0:22:15,2,5:15:513:2,5:67,174:-9.64228,-8.73534,-49.7668,0,-36.2189,-40.1391 0|0:15:7,3,5:7:242:3,5:95,176:-12.2431,-6.71918,-25.4773,0,-12.0496,-18.1801 dDocent_Contig_4013 10 . A G 8818.61 . AB=0.103774;ABP=147.557;AC=0;AF=0;AN=8;AO=11;CIGAR=1X1M1X1M1X3M1I2M;DP=342;DPB=357.1;DPRA=1.70968;EPP=26.8965;EPPR=81.1833;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=422;QR=1411;RO=36;RPL=0;RPP=26.8965;RPPR=81.1833;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:106:16,11,0,73:16:627:11,0,73:422,0,2899:-233.829,-204.013,-252.258,-238.646,-255.569,-290.202,0,-16.9268,-51.5571,-29.5819 0|0:140:15,0,32,92:15:591:0,32,92:0,1264,3664:-352.562,-357.078,-405.699,-253.07,-301.692,-292.059,-55.3879,-104.009,0,-76.3147 0|0:62:2,0,0,59:2:79:0,0,59:0,0,2380:-206.844,-207.446,-213.947,-207.446,-213.947,-213.947,-11.2697,-17.7608,-17.7608,0 0|0:34:3,0,3,28:3:114:0,3,28:0,118,1123:-91.9976,-92.9007,-102.248,-83.1953,-92.5419,-91.6389,-0.370723,-9.7128,0,-1.28396 dDocent_Contig_4014 17 . T A 13701.9 . AB=0.853535;ABP=217.964;AC=6;AF=0.75;AN=8;AO=409;CIGAR=1X;DP=445;DPB=445;DPRA=0;EPP=891.143;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=16147;QR=1367;RO=35;RPL=0;RPP=891.143;RPPR=79.0118;RPR=409;RUN=1;SAF=409;SAP=891.143;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:172:0,171:0:0:171:6750:-607.137,-51.4761,0 0/1:122:22,100:22:860:100:3943:-318.154,0,-40.9859 0/1:76:7,69:7:276:69:2725:-222.498,0,-2.33105 1/1:75:6,69:6:231:69:2729:-224.584,-1.42083,0 dDocent_Contig_4015 7 . C T 250.127 . AB=0.5;ABP=3.0103;AC=1;AF=0.125;AN=8;AO=10;CIGAR=1X;DP=103;DPB=103;DPRA=0.471429;EPP=24.725;EPPR=204.957;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=382;QR=3567;RO=93;RPL=0;RPP=24.725;RPPR=204.957;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=93;SRP=204.957;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:9,9:9:348:9:343:-25.8075,0,-26.2617 0/0:40:40,0:40:1531:0:0:0,-12.0412,-138.062 0/0:30:30,0:30:1155:0:0:0,-9.0309,-104.248 0/0:15:14,1:14:533:1:39:0,-0.618885,-44.4153 dDocent_Contig_4016 15 . T A 3737.21 . AB=0.431894;ABP=15.1374;AC=4;AF=0.5;AN=8;AO=130;CIGAR=1X;DP=301;DPB=301;DPRA=0;EPP=285.302;EPPR=374.332;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5203;QR=6844;RO=171;RPL=0;RPP=285.302;RPPR=374.332;RPR=130;RUN=1;SAF=130;SAP=285.302;SAR=0;SRF=171;SRP=374.332;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:107:73,34:73:2928:34:1357:-90.1799,0,-231.401 0/1:94:62,32:62:2466:32:1275:-86.721,0,-193.781 0/1:62:12,50:12:490:50:2013:-162.69,0,-25.7873 0/1:38:24,14:24:960:14:558:-39.1208,0,-75.2607 dDocent_Contig_4017 98 . N T 160.025 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=5;CIGAR=1X;DP=5;DPB=5;DPRA=0;EPP=13.8677;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=174;QR=0;RO=0;RPL=5;RPP=13.8677;RPPR=0;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:5:0,5:0:0:5:174:-16.002,-1.50515,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_4018 8 . A T 2127.94 . AB=0.0263158;ABP=225.186;AC=0;AF=0;AN=8;AO=9;CIGAR=1M1D1M1X4M1X10M;DP=378;DPB=380.053;DPRA=0;EPP=22.5536;EPPR=608.851;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=346;QR=10942;RO=279;RPL=0;RPP=22.5536;RPPR=608.851;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=279;SRP=608.851;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:117:100,0,17,0:100:3909:0,17,0:0,636,0:-22.3519,-52.4549,-373.846,0,-321.767,-316.65,-52.4549,-373.846,-321.767,-373.846 0|0:114:43,3,0,66:43:1687:3,0,66:117,0,2507:-192.635,-195.962,-333.803,-205.58,-334.707,-344.324,0,-129.127,-138.744,-118.876 0|0:90:82,3,3,0:82:3227:3,3,0:117,112,0:0,-15.0399,-279.67,-15.4973,-271.404,-280.118,-24.6845,-280.574,-281.022,-290.191 0|0:57:54,3,0,0:54:2119:3,0,0:112,0,0:0,-6.71241,-180.47,-16.2556,-181.373,-190.542,-16.2556,-181.373,-190.542,-190.542 dDocent_Contig_4019 98 . N T 100.773 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.29832;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=108;QR=0;RO=0;RPL=3;RPP=9.52472;RPPR=0;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_4020 98 . N C 78.8991 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=78;QR=0;RO=0;RPL=3;RPP=9.52472;RPPR=0;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1:0,1:0:0:1:35:-3.49863,-0.30103,0 ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:43:-4.0837,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_4021 149 . C A 6228.07 . AB=0.470588;ABP=5.43724;AC=8;AF=1;AN=8;AO=152;CIGAR=2M1X;DP=323;DPB=414.667;DPRA=0;EPP=333.074;EPPR=74.6689;GTI=0;LEN=1;MEANALT=5;MQM=60;MQMR=60;NS=4;NUMALT=5;ODDS=5.55112e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5934;QR=1253;RO=33;RPL=0;RPP=333.074;RPPR=74.6689;RPR=152;RUN=1;SAF=0;SAP=333.074;SAR=152;SRF=0;SRP=74.6689;SRR=33;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:148:12,42,0,18,8,62:12:447:42,0,18,8,62:1643,0,691,286,2404:-292.368,-160.894,-184.837,-295.981,-197.48,-332.567,-239.259,-140.758,-275.845,-270.426,-272.666,-174.165,-309.251,-252.53,-306.843,-98.5082,0,-135.094,-78.3712,-111.779,-116.43 1|1:86:16,17,2,0,4,47:16:610:17,2,0,4,47:679,81,0,124,1842:-152.535,-101.421,-146.341,-150.672,-144.778,-200.106,-157.352,-151.458,-200.708,-207.388,-147.405,-141.511,-190.761,-197.44,-196.236,-5.90316,0,-49.2594,-55.9397,-45.9964,-41.7913 1|1:50:0,9,0,0,6,35:0:0:9,0,0,6,35:354,0,0,223,1363:-141.139,-112.018,-109.309,-141.139,-112.018,-141.139,-141.139,-112.018,-141.139,-141.139,-122.889,-93.7693,-122.889,-122.889,-121.083,-29.1321,0,-29.1321,-29.1321,-10.8892,-18.596 1|1:39:5,5,6,2,11,8:5:196:5,6,2,11,8:193,245,78,399,325:-41.7548,-27.4095,-42.0239,-23.0394,-23.3087,-37.3536,-36.8479,-37.117,-32.7474,-52.3653,-10.6925,-10.962,-6.59111,-20.399,-23.4991,-16.4477,-16.717,-12.3462,-26.1559,0,-30.1601 dDocent_Contig_4022 107 . N T 411.912 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=13;CIGAR=1X;DP=13;DPB=13;DPRA=0;EPP=31.2394;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=12.2298;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=454;QR=0;RO=0;RPL=0;RPP=31.2394;RPPR=0;RPR=13;RUN=1;SAF=0;SAP=31.2394;SAR=13;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:13:0,13:0:0:13:454:-41.1912,-3.91339,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_4023 13 . G T 71.1109 . AB=0.138889;ABP=43.7857;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=72;DPB=72;DPRA=3;EPP=13.8677;EPPR=148.499;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=204;QR=2707;RO=67;RPL=0;RPP=13.8677;RPPR=148.499;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=67;SRP=148.499;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:31,5:31:1250:5:204:-7.90695,0,-101.93 0/0:12:12,0:12:484:0:0:0,-3.61236,-43.9116 0/0:16:16,0:16:648:0:0:0,-4.81648,-58.6524 0/0:8:8,0:8:325:0:0:0,-2.40824,-29.6196 dDocent_Contig_4024 8 . C T 2829.38 . AB=0.6;ABP=9.95901;AC=5;AF=0.625;AN=8;AO=92;CIGAR=1X3M1X;DP=128;DPB=128;DPRA=0;EPP=202.786;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3580;QR=1401;RO=36;RPL=0;RPP=202.786;RPPR=81.1833;RPR=92;RUN=1;SAF=92;SAP=202.786;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:40:20,20:20:790:20:780:-58.482,0,-59.383 1|1:48:4,44:4:139:44:1697:-140.129,-1.60396,0 0|1:27:7,20:7:276:20:788:-63.1167,0,-17.0817 0|1:13:5,8:5:196:8:315:-24.802,0,-14.1011 dDocent_Contig_4025 69 . T C 79.2072 . AB=0.166667;ABP=43.5445;AC=1;AF=0.125;AN=8;AO=11;CIGAR=1X;DP=171;DPB=171;DPRA=1.16456;EPP=26.8965;EPPR=350.446;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=377;QR=5559;RO=160;RPL=11;RPP=26.8965;RPPR=350.446;RPR=0;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=160;SRP=350.446;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:64:64,0:64:2202:0:0:0,-19.2659,-198.452 0/0:50:46,4:46:1627:4:140:0,-2.10657,-133.772 0/1:42:35,7:35:1206:7:237:-9.01759,0,-96.2005 0/0:15:15,0:15:524:0:0:0,-4.51545,-47.4909 dDocent_Contig_4026 98 . N C 1453.96 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=46;CIGAR=1X;DP=47;DPB=47;DPRA=0;EPP=102.898;EPPR=0;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1595;QR=0;RO=0;RPL=46;RPP=102.898;RPPR=0;RPR=0;RUN=1;SAF=46;SAP=102.898;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:14:0,14:0:0:14:490:-44.4326,-4.21442,0 1/1:16:0,16:0:0:16:553:-50.0973,-4.81648,0 1/1:15:0,14:0:0:14:483:-43.7108,-4.21442,0 1/1:2:0,2:0:0:2:69:-6.55266,-0.60206,0 dDocent_Contig_4028 12 . A G 5193.7 . AB=0.423168;ABP=24.6994;AC=4;AF=0.5;AN=8;AO=179;CIGAR=1X;DP=423;DPB=423;DPRA=0;EPP=391.704;EPPR=532.85;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7232;QR=9733;RO=244;RPL=0;RPP=391.704;RPPR=532.85;RPR=179;RUN=1;SAF=179;SAP=391.704;SAR=0;SRF=244;SRP=532.85;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:123:51,72:51:2057:72:2924:-226.209,0,-148.279 0/1:127:73,54:73:2930:54:2167:-156.968,0,-225.559 0/1:100:82,18:82:3244:18:732:-36.0995,0,-261.93 0/1:73:38,35:38:1502:35:1409:-105.084,0,-113.451 dDocent_Contig_4029 1 . N G 75.0157 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=4.60517;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=79;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:79:-7.49724,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_4031 18 . G A 3954.54 . AB=0.548117;ABP=7.81661;AC=4;AF=0.5;AN=8;AO=131;CIGAR=1X;DP=239;DPB=239;DPRA=0;EPP=287.473;EPPR=237.529;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5237;QR=4353;RO=108;RPL=0;RPP=287.473;RPPR=237.529;RPR=131;RUN=1;SAF=131;SAP=287.473;SAR=0;SRF=108;SRP=237.529;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:98:30,68:30:1223:68:2720:-215.424,0,-80.8363 0/1:63:36,27:36:1451:27:1082:-78.7024,0,-111.869 0/1:45:26,19:26:1036:19:754:-54.6292,0,-79.9845 0/1:33:16,17:16:643:17:681:-51.6877,0,-48.2689 dDocent_Contig_4032 8 . T C 264.227 . AB=0.123153;ABP=253.414;AC=1;AF=0.125;AN=8;AO=36;CIGAR=1X3M1X;DP=607;DPB=607;DPRA=1.61638;EPP=81.1833;EPPR=1240.75;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1397;QR=22391;RO=570;RPL=0;RPP=81.1833;RPPR=1240.75;RPR=36;RUN=1;SAF=36;SAP=81.1833;SAR=0;SRF=570;SRP=1240.75;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:203:178,25:178:6978:25:978:-27.2185,0,-566.702 0|0:172:161,11:161:6318:11:419:0,-13.719,-530.407 0|0:128:128,0:128:5024:0:0:0,-38.5318,-452.114 0|0:104:103,0:103:4071:0:0:0,-31.0061,-366.01 dDocent_Contig_4033 56 . G A 120.185 . AB=0.263158;ABP=12.2676;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=59;DPB=59;DPRA=1.425;EPP=13.8677;EPPR=120.27;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=205;QR=2086;RO=54;RPL=5;RPP=13.8677;RPPR=120.27;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:12:12,0:12:455:0:0:0,-3.61236,-41.2898 0/0:15:15,0:15:602:0:0:0,-4.51545,-54.5158 0/1:19:14,5:14:557:5:205:-13.1154,0,-44.7531 0/0:13:13,0:13:472:0:0:0,-3.91339,-42.8046 dDocent_Contig_4035 60 . C A 177.268 . AB=0.15942;ABP=72.5289;AC=1;AF=0.125;AN=8;AO=11;CIGAR=1X;DP=200;DPB=200;DPRA=1.58015;EPP=26.8965;EPPR=411.247;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=436;QR=7347;RO=188;RPL=11;RPP=26.8965;RPPR=411.247;RPR=0;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=188;SRP=411.247;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:87:86,0:86:3372:0:0:0,-25.8886,-303.442 0/1:69:58,11:58:2273:11:436:-18.8237,0,-183.969 0/0:28:28,0:28:1078:0:0:0,-8.42884,-97.2974 0/0:16:16,0:16:624:0:0:0,-4.81648,-56.4828 dDocent_Contig_4036 34 . A C 693.968 . AB=0.216216;ABP=106.537;AC=2;AF=0.25;AN=8;AO=38;CIGAR=1X;DP=316;DPB=316;DPRA=0;EPP=85.5263;EPPR=606.68;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1527;QR=11051;RO=278;RPL=0;RPP=85.5263;RPPR=606.68;RPR=38;RUN=1;SAF=38;SAP=85.5263;SAR=0;SRF=278;SRP=606.68;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:110:82,28:82:3273:28:1121:-68.062,0,-261.517 0/0:118:115,3:115:4570:3:123:0,-24.0568,-399.768 0/0:50:47,3:47:1857:3:121:0,-3.7713,-156.063 0/1:38:34,4:34:1351:4:162:-3.52782,0,-110.413 dDocent_Contig_4037 16 . T A 739.048 . AB=0.183099;ABP=188.809;AC=3;AF=0.375;AN=8;AO=47;CIGAR=1X;DP=320;DPB=320;DPRA=0;EPP=105.07;EPPR=595.822;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.6374;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.992674;PAO=0;PQA=0;PQR=0;PRO=0;QA=1887;QR=10937;RO=273;RPL=0;RPP=105.07;RPPR=595.822;RPR=47;RUN=1;SAF=47;SAP=105.07;SAR=0;SRF=273;SRP=595.822;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:116:92,24:92:3649:24:963:-52.0509,0,-293.506 0/0:107:99,8:99:3994:8:325:0,-2.59057,-327.882 0/1:70:62,8:62:2489:8:315:-7.63949,0,-203.03 0/1:27:20,7:20:805:7:284:-17.8062,0,-64.639 dDocent_Contig_4038 41 . C T 183.107 . AB=0.15;ABP=88.132;AC=1;AF=0.125;AN=8;AO=14;CIGAR=1X;DP=174;DPB=174;DPRA=1.94915;EPP=33.4109;EPPR=350.446;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=557;QR=6409;RO=160;RPL=0;RPP=33.4109;RPPR=350.446;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=160;SRP=350.446;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:80:68,12:68:2737:12:476:-19.1066,0,-222.351 0/0:35:33,2:33:1327:2:81:0,-2.85032,-112.006 0/0:33:33,0:33:1319:0:0:0,-9.93399,-118.963 0/0:26:26,0:26:1026:0:0:0,-7.82678,-92.6379 dDocent_Contig_4039 17 . A G 6810.7 . AB=0.520642;ABP=4.62396;AC=4;AF=0.5;AN=8;AO=227;CIGAR=1X;DP=436;DPB=436;DPRA=0;EPP=495.935;EPPR=456.848;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=9074;QR=8318;RO=209;RPL=0;RPP=495.935;RPPR=456.848;RPR=227;RUN=1;SAF=227;SAP=495.935;SAR=0;SRF=209;SRP=456.848;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:130:39,91:39:1542:91:3662:-290.459,0,-99.8869 0/1:145:77,68:77:3063:68:2716:-200.908,0,-232.112 0/1:87:45,42:45:1802:42:1652:-122.718,0,-136.201 0/1:74:48,26:48:1911:26:1044:-71.9744,0,-149.922 dDocent_Contig_4040 68 . G A 1716.17 . AB=0.593023;ABP=9.47422;AC=5;AF=0.625;AN=8;AO=51;CIGAR=1X3M;DP=86;DPB=86;DPRA=0;EPP=113.755;EPPR=46.4397;GTI=0;LEN=1;MEANALT=2.25;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2015;QR=761;RO=20;RPL=51;RPP=113.755;RPPR=46.4397;RPR=0;RUN=1;SAF=51;SAP=113.755;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:21:0,5,16:0:0:5,16:194,624:-67.6186,-51.6792,-50.1741,-16.3275,0,-11.511 0|1:28:8,5,13:8:310:5,13:199,518:-40.2987,-26.3121,-50.2834,0,-9.0968,-21.5902 0|1:18:2,0,16:2:79:0,16:0,640:-52.5163,-53.1184,-59.6188,0,-6.89557,-2.07909 0|1:19:10,3,6:10:372:3,6:108,233:-16.1505,-10.3606,-39.8888,0,-21.6438,-28.6444 dDocent_Contig_4041 47 . C A 379.404 . AB=0.192308;ABP=88.5329;AC=2;AF=0.25;AN=8;AO=23;CIGAR=1X;DP=186;DPB=186;DPRA=0;EPP=52.9542;EPPR=339.802;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=900;QR=6457;RO=163;RPL=0;RPP=52.9542;RPPR=339.802;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=163;SRP=356.96;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:62:52,10:52:2055:10:381:-15.9669,0,-166.475 0/0:54:53,1:53:2090:1:40:0,-12.2599,-184.283 0/1:42:32,10:32:1288:10:405:-24.1672,0,-103.54 0/0:28:26,2:26:1024:2:74:0,-1.40307,-85.4291 dDocent_Contig_4042 10 . G T 3007.08 . AB=0.372014;ABP=44.6981;AC=4;AF=0.5;AN=8;AO=109;CIGAR=1X;DP=293;DPB=293;DPRA=0;EPP=239.701;EPPR=402.561;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=0.994565;PAO=0;PQA=0;PQR=0;PRO=0;QA=4364;QR=7338;RO=184;RPL=0;RPP=239.701;RPPR=402.561;RPR=109;RUN=1;SAF=109;SAP=239.701;SAR=0;SRF=184;SRP=402.561;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:95:62,33:62:2482:33:1338:-92.0769,0,-194.922 0/1:77:52,25:52:2089:25:996:-66.7534,0,-165.012 0/1:71:36,35:36:1429:35:1392:-104.166,0,-107.485 0/1:50:34,16:34:1338:16:638:-42.7009,0,-105.624 dDocent_Contig_4043 126 . T C 4705.19 . AB=0.72;ABP=34.5401;AC=6;AF=0.75;AN=8;AO=157;CIGAR=1X;DP=178;DPB=178;DPRA=0;EPP=343.931;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5490;QR=726;RO=21;RPL=0;RPP=343.931;RPPR=48.6112;RPR=157;RUN=1;SAF=0;SAP=343.931;SAR=157;SRF=0;SRP=48.6112;SRR=21;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:33:11,22:11:377:22:773:-59.958,0,-24.3266 1/1:81:0,81:0:0:81:2836:-255.484,-24.3834,0 0/1:42:10,32:10:349:32:1097:-86.3877,0,-19.1035 1/1:22:0,22:0:0:22:784:-70.8839,-6.62266,0 dDocent_Contig_4044 13 . C G 99.6641 . AB=0.14;ABP=59.2949;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=248;DPB=248;DPRA=0.850746;EPP=20.3821;EPPR=524.164;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=327;QR=9652;RO=240;RPL=0;RPP=20.3821;RPPR=524.164;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=240;SRP=524.164;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:85:85,0:85:3436:0:0:0,-25.5875,-309.267 0/1:50:43,7:43:1738:7:286:-11.0633,0,-141.577 0/0:64:63,1:63:2533:1:41:0,-15.1714,-224.005 0/0:49:49,0:49:1945:0:0:0,-14.7505,-175.246 dDocent_Contig_4045 174 . T C 103.852 . AB=0.217391;ABP=18.9659;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=84;DPB=84;DPRA=1.13115;EPP=13.8677;EPPR=174.557;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=197;QR=3136;RO=79;RPL=5;RPP=13.8677;RPPR=174.557;RPR=0;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=174.557;SRR=79;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:18,5:18:737:5:197:-11.1811,0,-59.7282 0/0:20:20,0:20:815:0:0:0,-6.0206,-73.6642 0/0:20:20,0:20:754:0:0:0,-6.0206,-68.1693 0/0:21:21,0:21:830:0:0:0,-6.32163,-75.0043 dDocent_Contig_4047 14 . G A 4226.94 . AB=0.618056;ABP=20.4424;AC=5;AF=0.625;AN=8;AO=135;CIGAR=1X;DP=190;DPB=190;DPRA=0;EPP=296.159;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5200;QR=2165;RO=55;RPL=0;RPP=296.159;RPPR=122.441;RPR=135;RUN=1;SAF=135;SAP=296.159;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:67:27,40:27:1052:40:1564:-120.84,0,-74.7916 1/1:46:0,46:0:0:46:1778:-160.233,-13.8474,0 0/1:45:4,41:4:156:41:1544:-125.664,0,-0.869477 0/1:32:24,8:24:957:8:314:-18.9891,0,-76.7935 dDocent_Contig_4048 69 . T A 539.913 . AB=0.239669;ABP=74.2382;AC=1;AF=0.125;AN=8;AO=29;CIGAR=1X;DP=378;DPB=378;DPRA=1.41245;EPP=65.983;EPPR=760.854;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1010;QR=12134;RO=349;RPL=29;RPP=65.983;RPPR=760.854;RPR=0;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=349;SRP=760.854;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:121:92,29:92:3198:29:1010:-54.7872,0,-251.619 0/0:101:101,0:101:3521:0:0:0,-30.404,-317.104 0/0:78:78,0:78:2692:0:0:0,-23.4803,-242.524 0/0:78:78,0:78:2723:0:0:0,-23.4803,-245.313 dDocent_Contig_4049 10 . T C 25049.3 . AB=0.365214;ABP=394.037;AC=4;AF=0.5;AN=8;AO=905;CIGAR=1X;DP=2478;DPB=2478;DPRA=0;EPP=1968.19;EPPR=3397.03;GTI=0;LEN=1;MEANALT=1.75;MQM=59.9624;MQMR=59.5444;NS=4;NUMALT=1;ODDS=0;PAIRED=0.0850829;PAIREDR=0.0293555;PAO=0;PQA=0;PQR=0;PRO=0;QA=36202;QR=62710;RO=1567;RPL=0;RPP=1968.19;RPPR=3405.71;RPR=905;RUN=1;SAF=905;SAP=1968.19;SAR=0;SRF=1566;SRP=3397.03;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:655:387,267:387:15481:267:10753:-769.741,0,-1194.01 0/1:749:489,260:489:19593:260:10406:-710.369,0,-1534.26 0/1:790:501,288:501:20051:288:11461:-792.097,0,-1562.11 0/1:284:190,90:190:7585:90:3582:-237.717,0,-597.105 dDocent_Contig_4050 9 . T G 311.11 . AB=0.1;ABP=86.3948;AC=2;AF=0.25;AN=8;AO=6;CIGAR=2X1M3X2M;DP=179;DPB=179;DPRA=0.422535;EPP=16.0391;EPPR=272.273;GTI=0;LEN=1;MEANALT=3.5;MQM=46;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=232;QR=4875;RO=124;RPL=0;RPP=16.0391;RPPR=272.273;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=124;SRP=272.273;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:71:59,1,0,8:59:2316:1,0,8:39,0,207:0,-14.6705,-204.983,-17.7608,-205.284,-208.362,-3.72513,-191.243,-194.32,-191.912 0|1:41:32,1,5,1:32:1269:1,5,1:32,193,40:-5.99509,-13.0775,-117.311,0,-102.076,-103.118,-13.7871,-115.766,-102.778,-118.013 0|1:48:22,9,0,16:22:859:9,0,16:349,0,396:-20.9679,0,-68.0002,-27.5906,-70.7095,-98.2579,-1.17809,-44.2762,-71.8106,-66.9941 0|0:19:11,1,1,6:11:431:1,1,6:40,39,162:-7.73255,-7.88843,-43.1086,-7.89079,-40.2693,-43.1109,0,-32.3093,-32.3116,-33.6426 dDocent_Contig_4051 25 . A T 144.227 . AB=0.186047;ABP=39.8243;AC=2;AF=0.25;AN=8;AO=8;CIGAR=1X1M1X;DP=75;DPB=75;DPRA=1.34375;EPP=20.3821;EPPR=146.327;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.75;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=321;QR=2627;RO=66;RPL=0;RPP=20.3821;RPPR=146.327;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=66;SRP=146.327;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:23:18,5:18:721:5:200:-11.4562,0,-58.2942 0|1:20:16,3:16:636:3:121:-5.16024,0,-51.4575 0|0:16:16,0:16:632:0:0:0,-4.81648,-57.2182 0|0:16:16,0:16:638:0:0:0,-4.81648,-57.7554 dDocent_Contig_4053 173 . A T 4612.34 . AB=0.79;ABP=76.0586;AC=5;AF=0.625;AN=8;AO=144;CIGAR=1X;DP=171;DPB=171;DPRA=0;EPP=315.702;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5722;QR=1086;RO=27;RPL=144;RPP=315.702;RPPR=61.6401;RPR=0;RUN=1;SAF=0;SAP=315.702;SAR=144;SRF=0;SRP=61.6401;SRR=27;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:46:11,35:11:447:35:1397:-112.14,0,-26.7381 1/1:71:6,65:6:230:65:2589:-212.082,-0.311517,0 0/1:29:3,26:3:123:26:1017:-83.089,0,-2.73492 0/1:25:7,18:7:286:18:719:-57.5087,0,-18.5891 dDocent_Contig_4054 97 . A G 70.302 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=11X3I2M;DP=2;DPB=2.46154;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=4.60517;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=74;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. 1|1:2:0,2:0:0:2:74:-7.02588,-0.60206,0 .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. dDocent_Contig_4055 10 . T C 4256.88 . AB=0.483221;ABP=3.73898;AC=4;AF=0.5;AN=8;AO=144;CIGAR=1X;DP=298;DPB=298;DPRA=0;EPP=315.702;EPPR=337.417;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.951389;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5771;QR=6204;RO=154;RPL=0;RPP=315.702;RPPR=337.417;RPR=144;RUN=1;SAF=144;SAP=315.702;SAR=0;SRF=154;SRP=337.417;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:94:49,45:49:1972:45:1800:-133.912,0,-149.368 0/1:104:55,49:55:2212:49:1965:-145.733,0,-167.938 0/1:73:37,36:37:1494:36:1440:-107.877,0,-112.724 0/1:27:13,14:13:526:14:566:-43.155,0,-39.5586 dDocent_Contig_4056 48 . G T 451.665 . AB=0.165644;ABP=161.288;AC=1;AF=0.125;AN=8;AO=29;CIGAR=1X;DP=448;DPB=448;DPRA=1.01802;EPP=65.983;EPPR=886.986;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.8616;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.995227;PAO=0;PQA=0;PQR=0;PRO=0;QA=1134;QR=16314;RO=419;RPL=0;RPP=65.983;RPPR=886.986;RPR=29;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=419;SRP=912.857;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:111:111,0:111:4368:0:0:0,-33.4143,-391.46 0/0:111:111,0:111:4350:0:0:0,-33.4143,-391.488 0/1:163:136,27:136:5243:27:1056:-46.2634,0,-422.709 0/0:63:61,2:61:2353:2:78:0,-11.5616,-204.55 dDocent_Contig_4057 43 . T C 2285.5 . AB=0.311258;ABP=49.7329;AC=2;AF=0.25;AN=8;AO=47;CIGAR=2X;DP=151;DPB=151;DPRA=0;EPP=96.5684;EPPR=111.584;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.765957;PAIREDR=0.88;PAO=0;PQA=0;PQR=0;PRO=0;QA=1821;QR=1934;RO=50;RPL=1;RPP=96.5684;RPPR=111.584;RPR=46;RUN=1;SAF=47;SAP=105.07;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:41:5,22,14:5:193:22,14:831,567:-97.5032,-30.9215,-40.1437,-52.2453,0,-63.8822 0|0:39:23,4,12:23:879:4,12:162,479:-32.5228,-26.0867,-96.9806,0,-58.7282,-68.4775 1|0:48:12,18,18:12:476:18,18:706,704:-73.13,-18.6868,-52.4539,-18.8671,0,-52.6337 0|0:23:10,3,10:10:386:3,10:122,405:-30.384,-23.3307,-54.1153,0,-21.6134,-28.671 dDocent_Contig_4058 34 . A T 2098.96 . AB=0.441341;ABP=8.36013;AC=4;AF=0.5;AN=8;AO=79;CIGAR=1X;DP=179;DPB=179;DPRA=0;EPP=174.557;EPPR=220.158;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2972;QR=3848;RO=100;RPL=0;RPP=174.557;RPPR=220.158;RPR=79;RUN=1;SAF=79;SAP=174.557;SAR=0;SRF=100;SRP=220.158;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:61:35,26:35:1325:26:981:-70.2358,0,-101.165 0/1:75:53,22:53:2058:22:819:-51.4496,0,-162.856 0/1:26:7,19:7:276:19:723:-57.5682,0,-17.3828 0/1:17:5,12:5:189:12:449:-35.6324,0,-12.255 dDocent_Contig_4059 13 . A G 124.244 . AB=0.125;ABP=61.6401;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X1M1X1M;DP=287;DPB=287;DPRA=0.561404;EPP=16.0391;EPPR=589.308;GTI=0;LEN=1;MEANALT=1;MQM=51.3333;MQMR=60;NS=4;NUMALT=2;ODDS=6.93889e-18;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=232;QR=10603;RO=270;RPL=0;RPP=16.0391;RPPR=589.308;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=270;SRP=589.308;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:91:89,0,1:89:3518:0,1:0,40:0,-26.7917,-316.281,-23.529,-313.012,-312.711 0|0:68:60,0,8:60:2323:0,8:0,316:-7.93909,-26.0009,-216.803,0,-191.191,-188.783 0|0:80:79,0,1:79:3112:0,1:0,41:0,-23.7814,-279.803,-20.2363,-276.642,-276.341 0|1:48:42,6,0:42:1650:6,0:232,0:-6.67915,0,-134.292,-19.3224,-136.099,-155.036 dDocent_Contig_4060 74 . T C 117.321 . AB=0.189189;ABP=34.0565;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=136;DPB=136;DPRA=1.12121;EPP=18.2106;EPPR=283.13;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=259;QR=4709;RO=129;RPL=7;RPP=18.2106;RPPR=283.13;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=129;SRP=283.13;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:37:30,7:30:1083:7:259:-12.528,0,-86.6403 0/0:57:57,0:57:2091:0:0:0,-17.1587,-188.451 0/0:25:25,0:25:908:0:0:0,-7.52575,-82.0399 0/0:17:17,0:17:627:0:0:0,-5.11751,-56.7662 dDocent_Contig_4061 108 . C T 86.1813 . AB=0.214286;ABP=22.8638;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=93;DPB=93;DPRA=1.29231;EPP=16.0391;EPPR=191.928;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=198;QR=2898;RO=87;RPL=0;RPP=16.0391;RPPR=191.928;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=191.928;SRR=87;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:34:34,0:34:1109:0:0:0,-10.235,-100.102 0/1:28:22,6:22:743:6:198:-9.71504,0,-58.7556 0/0:21:21,0:21:727:0:0:0,-6.32163,-65.7516 0/0:10:10,0:10:319:0:0:0,-3.0103,-29.0185 dDocent_Contig_4062 8 . T C 88.0431 . AB=0.157895;ABP=41.6397;AC=1;AF=0.125;AN=8;AO=10;CIGAR=1X;DP=135;DPB=135;DPRA=0.850877;EPP=24.725;EPPR=274.444;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.4;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.896;PAO=0;PQA=0;PQR=0;PRO=0;QA=387;QR=4787;RO=125;RPL=0;RPP=24.725;RPPR=274.444;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=125;SRP=274.444;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:40:37,3:37:1431:3:115:0,-1.31631,-118.344 0/1:38:32,6:32:1224:6:233:-9.90094,0,-97.7462 0/0:38:38,0:38:1440:0:0:0,-11.4391,-129.858 0/0:19:18,1:18:692:1:39:0,-1.82301,-58.7173 dDocent_Contig_4064 16 . T G 42.7169 . AB=0.0989011;ABP=130.173;AC=1;AF=0.125;AN=8;AO=15;CIGAR=1X;DP=276;DPB=276;DPRA=1.40252;EPP=35.5824;EPPR=567.593;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.976923;PAO=0;PQA=0;PQR=0;PRO=0;QA=597;QR=10430;RO=260;RPL=0;RPP=35.5824;RPPR=567.593;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=260;SRP=567.593;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:69:64,4:64:2576:4:160:0,-6.08601,-217.177 0/1:91:82,9:82:3302:9:360:-5.36857,0,-269.832 0/0:53:53,0:53:2128:0:0:0,-15.9546,-191.695 0/0:63:61,2:61:2424:2:77:0,-11.6567,-210.998 dDocent_Contig_4065 108 . G T 5760.53 . AB=0.441288;ABP=18.8193;AC=4;AF=0.5;AN=8;AO=233;CIGAR=1X;DP=528;DPB=528;DPRA=0;EPP=508.963;EPPR=643.595;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=8210;QR=9517;RO=295;RPL=0;RPP=508.963;RPPR=643.595;RPR=233;RUN=1;SAF=0;SAP=508.963;SAR=233;SRF=0;SRP=643.595;SRR=295;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:125:73,52:73:2408:52:1843:-128.522,0,-179.355 0/1:193:118,75:118:3820:75:2647:-180.379,0,-285.928 0/1:129:60,69:60:1882:69:2430:-180.125,0,-130.813 0/1:81:44,37:44:1407:37:1290:-92.0166,0,-102.532 dDocent_Contig_4066 15 . C G 138.624 . AB=0.173913;ABP=45.4956;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=212;DPB=212;DPRA=0.831325;EPP=20.3821;EPPR=445.991;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=316;QR=8026;RO=204;RPL=0;RPP=20.3821;RPPR=445.991;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=204;SRP=445.991;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:82:82,0:82:3238:0:0:0,-24.6845,-291.506 0/1:46:38,8:38:1509:8:316:-14.9593,0,-122.215 0/0:59:59,0:59:2306:0:0:0,-17.7608,-207.728 0/0:25:25,0:25:973:0:0:0,-7.52575,-87.8729 dDocent_Contig_4067 26 . A G 5833.22 . AB=0.518519;ABP=4.13625;AC=4;AF=0.5;AN=8;AO=196;CIGAR=1X;DP=378;DPB=378;DPRA=0;EPP=428.619;EPPR=398.218;GTI=0;LEN=1;MEANALT=1;MQM=59.898;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.964286;PAIREDR=0.659341;PAO=0;PQA=0;PQR=0;PRO=0;QA=7793;QR=7223;RO=182;RPL=0;RPP=428.619;RPPR=398.218;RPR=196;RUN=1;SAF=196;SAP=428.619;SAR=0;SRF=182;SRP=398.218;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:168:89,79:89:3546:79:3137:-231.841,0,-268.611 0/1:90:25,65:25:980:65:2603:-207.242,0,-61.4052 0/1:55:25,30:25:991:30:1192:-91.0036,0,-72.9306 0/1:65:43,22:43:1706:22:861:-58.2254,0,-134.198 dDocent_Contig_4068 166 . C A 48.4892 . AB=0.121951;ABP=53.9075;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=136;DPB=136;DPRA=1.29474;EPP=13.8677;EPPR=287.473;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=199;QR=5230;RO=131;RPL=5;RPP=13.8677;RPPR=287.473;RPR=0;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=287.473;SRR=131;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:35:35,0:35:1401:0:0:0,-10.536,-126.346 0/0:33:33,0:33:1315:0:0:0,-9.93399,-118.613 0/1:41:36,5:36:1434:5:199:-5.94583,0,-116.969 0/0:27:27,0:27:1080:0:0:0,-8.12781,-97.4889 dDocent_Contig_4069 29 . G A 1898.36 . AB=0.510204;ABP=3.09893;AC=5;AF=0.625;AN=8;AO=63;CIGAR=1X;DP=111;DPB=111;DPRA=0;EPP=139.813;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=54.6667;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=2474;QR=1912;RO=48;RPL=0;RPP=139.813;RPPR=107.241;RPR=63;RUN=1;SAF=0;SAP=139.813;SAR=63;SRF=0;SRP=107.241;SRR=48;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:19,12:19:750:12:459:-32.1849,0,-58.4886 1/1:13:0,13:0:0:13:517:-46.2215,-3.91339,0 0/1:24:8,16:8:324:16:628:-49.5442,0,-22.3045 0/1:43:21,22:21:838:22:870:-65.4767,0,-62.7875 dDocent_Contig_4070 11 . T A 5132.24 . AB=0.769585;ABP=139.993;AC=4;AF=0.5;AN=8;AO=167;CIGAR=1X3M2X2M1X;DP=217;DPB=217;DPRA=0;EPP=365.646;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=58.3174;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6596;QR=1971;RO=50;RPL=0;RPP=365.646;RPPR=111.584;RPR=167;RUN=1;SAF=167;SAP=365.646;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:70:11,59:11:437:59:2334:-189.138,0,-18.6138 0|1:37:5,32:5:197:32:1261:-99.6361,0,-6.96829 0|1:63:16,47:16:625:47:1857:-146.485,0,-37.6174 0|1:47:18,29:18:712:29:1144:-82.9545,0,-50.2584 dDocent_Contig_4071 10 . T A 1408.17 . AB=0.144;ABP=140.612;AC=1;AF=0.125;AN=8;AO=18;CIGAR=1X1M1X2M1X2M1X;DP=125;DPB=125;DPRA=0;EPP=42.0968;EPPR=72.4974;GTI=0;LEN=1;MEANALT=4.5;MQM=60;MQMR=60;NS=4;NUMALT=5;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=707;QR=1263;RO=32;RPL=0;RPP=42.0968;RPPR=72.4974;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:28:8,10,0,2,3,5:8:316:10,0,2,3,5:394,0,76,117,193:-30.0113,0,-22.997,-32.4196,-26.0073,-58.4244,-26.1878,-19.7757,-52.1923,-51.5903,-22.8019,-16.3897,-48.8069,-42.575,-47.9038,-16.5704,-10.1583,-42.575,-36.3433,-32.9578,-41.0699 0|0:31:9,6,4,1,0,11:9:354:6,4,1,0,11:235,155,35,0,413:-31.1151,-14.4961,-41.8157,-21.0888,-30.8868,-49.0092,-30.9781,-40.7755,-47.3669,-59.8003,-33.8244,-43.6219,-50.2133,-60.1013,-62.9479,0,-9.79777,-16.3894,-26.2773,-29.123,-25.8117 0|0:40:5,1,10,4,3,17:5:195:1,10,4,3,17:39,389,150,117,641:-66.9597,-65.2588,-80.9874,-36.4926,-49.3168,-49.5127,-56.1792,-69.0028,-40.2373,-71.0047,-58.8465,-71.6702,-42.9043,-62.5906,-73.9732,-15.9416,-28.765,0,-19.687,-22.3529,-26.8535 0|0:26:10,1,4,7,3,1:10:398:1,4,7,3,1:39,154,254,105,39:-17.7206,-17.5236,-50.0069,-8.08089,-37.6622,-39.6645,0,-29.5787,-20.1404,-30.6775,-12.1948,-41.7715,-32.3327,-24.2511,-44.0746,-17.5236,-47.1017,-37.6622,-29.5787,-41.7715,-50.0069 dDocent_Contig_4072 70 . T C 504.916 . AB=0.17931;ABP=132.535;AC=1;AF=0.125;AN=8;AO=33;CIGAR=1X;DP=339;DPB=339;DPRA=0.84375;EPP=74.6689;EPPR=667.481;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1318;QR=12229;RO=306;RPL=33;RPP=74.6689;RPPR=667.481;RPR=0;RUN=1;SAF=33;SAP=74.6689;SAR=0;SRF=306;SRP=667.481;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:96:96,0:96:3835:0:0:0,-28.8989,-345.156 0/1:145:119,26:119:4783:26:1055:-51.5885,0,-386.703 0/0:64:59,5:59:2347:5:183:0,-2.44691,-194.561 0/0:34:32,2:32:1264:2:80:0,-2.64323,-106.433 dDocent_Contig_4073 43 . T G 8517.16 . AB=0.683099;ABP=44.36;AC=6;AF=0.75;AN=8;AO=257;CIGAR=1X;DP=306;DPB=306;DPRA=0;EPP=552.427;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.972763;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=10112;QR=1830;RO=49;RPL=2;RPP=543.842;RPPR=109.412;RPR=255;RUN=1;SAF=256;SAP=552.427;SAR=1;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:53:24,29:24:892:29:1119:-85.0358,0,-64.6323 0/1:89:21,68:21:787:68:2653:-212.097,0,-44.3587 1/1:94:4,90:4:151:90:3571:-307.449,-14.3405,0 1/1:70:0,70:0:0:70:2769:-249.328,-21.0721,0 dDocent_Contig_4074 107 . N A 88.5754 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=89;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:1:0,1:0:0:1:19:-1.89997,-0.30103,0 1/1:2:0,2:0:0:2:70:-6.6474,-0.60206,0 dDocent_Contig_4076 107 . N C 96.1219 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.29832;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=103;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:103:-9.61002,-0.90309,0 dDocent_Contig_4077 116 . T C 1764.31 . AB=0.0677966;ABP=98.7391;AC=0;AF=0;AN=8;AO=4;CIGAR=1X3M1X;DP=114;DPB=114;DPRA=0;EPP=11.6962;EPPR=89.8692;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=116;QR=1294;RO=40;RPL=0;RPP=11.6962;RPPR=89.8692;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=89.8692;SRR=40;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:21:12,0,9:12:394:0,9:0,304:-21.3668,-24.9792,-56.812,0,-32.1664,-29.4571 0|0:25:10,2,13:10:323:2,13:60,453:-33.8726,-32.0922,-57.5318,0,-21.2785,-22.1585 0|0:34:12,0,22:12:379:0,22:0,734:-56.1364,-59.7488,-90.2316,0,-30.8049,-24.1822 0|0:34:6,2,26:6:198:2,26:56,885:-70.0448,-67.4179,-82.8229,0,-11.6216,-8.21967 dDocent_Contig_4078 102 . N A 362.967 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=11;CIGAR=7X1M1X1M1X;DP=11;DPB=11;DPRA=0;EPP=26.8965;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=38.1818;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=419;QR=0;RO=0;RPL=0;RPP=26.8965;RPPR=0;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:3:0,3:0:0:3:114:-9.88518,-0.90309,0 .:.:.:.:.:.:.:. 1|1:6:0,6:0:0:6:228:-19.2393,-1.80618,0 1|1:2:0,2:0:0:2:77:-6.69288,-0.60206,0 dDocent_Contig_4079 98 . N T 259.17 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=8;CIGAR=1X;DP=8;DPB=8;DPRA=0;EPP=20.3821;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=277;QR=0;RO=0;RPL=8;RPP=20.3821;RPPR=0;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:105:-9.79616,-0.90309,0 ./.:.:.:.:.:.:.:. 1/1:5:0,5:0:0:5:172:-15.8185,-1.50515,0 ./.:.:.:.:.:.:.:. dDocent_Contig_4080 12 . G A 266.071 . AB=0.289474;ABP=17.6392;AC=1;AF=0.125;AN=8;AO=11;CIGAR=1X;DP=82;DPB=82;DPRA=2.59091;EPP=26.8965;EPPR=157.185;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=431;QR=2777;RO=71;RPL=0;RPP=26.8965;RPPR=157.185;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=71;SRP=157.185;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:11,0:11:434:0:0:0,-3.31133,-39.4147 0/1:38:27,11:27:1050:11:431:-27.704,0,-83.3627 0/0:20:20,0:20:775:0:0:0,-6.0206,-70.0742 0/0:13:13,0:13:518:0:0:0,-3.91339,-46.9683 dDocent_Contig_4083 49 . T A 2838.85 . AB=0.206325;ABP=500.421;AC=3;AF=0.375;AN=8;AO=153;CIGAR=1X;DP=1049;DPB=1049;DPRA=0;EPP=318.101;EPPR=1729.37;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6038;QR=35606;RO=896;RPL=2;RPP=318.101;RPPR=1729.37;RPR=151;RUN=1;SAF=153;SAP=335.246;SAR=0;SRF=896;SRP=1948.65;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:356:268,88:268:10652:88:3463:-204.545,0,-850.83 0/0:385:369,16:369:14708:16:630:0,-58.8624,-1265.57 0/1:191:171,20:171:6716:20:788:-13.7404,0,-546.68 0/1:117:88,29:88:3530:29:1157:-69.1914,0,-282.509 dDocent_Contig_4084 21 . A C 2020.7 . AB=0.351852;ABP=44.1879;AC=4;AF=0.5;AN=8;AO=76;CIGAR=1X;DP=216;DPB=216;DPRA=0;EPP=168.042;EPPR=304.845;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3010;QR=5559;RO=139;RPL=0;RPP=168.042;RPPR=304.845;RPR=76;RUN=1;SAF=76;SAP=168.042;SAR=0;SRF=139;SRP=304.845;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:67:42,25:42:1691:25:989:-69.1394,0,-132.241 0/1:58:35,23:35:1410:23:931:-66.6325,0,-109.692 0/1:54:40,13:40:1582:13:503:-29.2602,0,-126.269 0/1:37:22,15:22:876:15:587:-42.0277,0,-68.0046 dDocent_Contig_4085 64 . C T 109.898 . AB=0.189189;ABP=34.0565;AC=2;AF=0.25;AN=8;AO=7;CIGAR=1X;DP=48;DPB=48;DPRA=3.36364;EPP=18.2106;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=262;QR=1582;RO=41;RPL=7;RPP=18.2106;RPPR=92.0407;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:17,5:17:654:5:186:-10.4768,0,-52.5738 0/0:1:1,0:1:39:0:0:0,-0.30103,-3.89656 0/1:15:13,2:13:502:2:76:-2.69922,0,-41.013 0/0:10:10,0:10:387:0:0:0,-3.0103,-35.1875 dDocent_Contig_4086 28 . G A 102.248 . AB=0.132353;ABP=82.8438;AC=2;AF=0.25;AN=8;AO=9;CIGAR=1X;DP=187;DPB=187;DPRA=0.571429;EPP=22.5536;EPPR=389.532;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=357;QR=6934;RO=178;RPL=0;RPP=22.5536;RPPR=389.532;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=178;SRP=389.532;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:60:60,0:60:2401:0:0:0,-18.0618,-216.249 0/0:59:59,0:59:2260:0:0:0,-17.7608,-203.587 0/1:43:38,5:38:1431:5:194:-4.88587,0,-116.094 0/1:25:21,4:21:842:4:163:-7.53268,0,-68.5677 dDocent_Contig_4087 40 . G C 2129.98 . AB=0.424779;ABP=8.56389;AC=5;AF=0.625;AN=8;AO=71;CIGAR=1X;DP=138;DPB=138;DPRA=0;EPP=157.185;EPPR=148.499;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=0.830986;PAIREDR=0.850746;PAO=0;PQA=0;PQR=0;PRO=0;QA=2847;QR=2652;RO=67;RPL=0;RPP=157.185;RPPR=148.499;RPR=71;RUN=1;SAF=71;SAP=157.185;SAR=0;SRF=67;SRP=148.499;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:13,15:13:521:15:595:-45.4574,0,-38.8082 0/1:40:22,18:22:874:18:718:-52.9047,0,-66.9279 0/1:45:30,15:30:1184:15:613:-41.9604,0,-93.2896 1/1:25:2,23:2:73:23:921:-76.2662,-0.595677,0 dDocent_Contig_4088 140 . A G 1270.2 . AB=0.534884;ABP=3.91929;AC=4;AF=0.5;AN=8;AO=46;CIGAR=1X;DP=86;DPB=86;DPRA=0;EPP=102.898;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.934783;PAIREDR=0.925;PAO=0;PQA=0;PQR=0;PRO=0;QA=1738;QR=1524;RO=40;RPL=0;RPP=102.898;RPPR=89.8692;RPR=46;RUN=1;SAF=0;SAP=102.898;SAR=46;SRF=0;SRP=89.8692;SRR=40;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:20,11:20:762:11:428:-29.5434,0,-59.5768 0/1:34:12,22:12:453:22:811:-63.0667,0,-30.8811 0/1:8:1,7:1:39:7:271:-22.3481,0,-1.48832 0/1:13:7,6:7:270:6:228:-16.9708,0,-20.7519 dDocent_Contig_4089 31 . A G 78.4189 . AB=0.115942;ABP=91.4113;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X;DP=246;DPB=246;DPRA=0.629139;EPP=22.5536;EPPR=517.649;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=367;QR=9404;RO=237;RPL=0;RPP=22.5536;RPPR=517.649;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=237;SRP=517.649;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:68:68,0:68:2686:0:0:0,-20.47,-241.865 0/0:83:83,0:83:3316:0:0:0,-24.9855,-298.501 0/1:69:61,8:61:2405:8:326:-8.9388,0,-195.826 0/0:26:25,1:25:997:1:41:0,-3.73221,-85.9313 dDocent_Contig_4090 14 . G T 459.457 . AB=0.225806;ABP=63.7415;AC=2;AF=0.25;AN=8;AO=22;CIGAR=1X;DP=203;DPB=203;DPRA=1.44737;EPP=50.7827;EPPR=396.047;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=878;QR=7071;RO=181;RPL=0;RPP=50.7827;RPPR=396.047;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=181;SRP=396.047;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:38:38,0:38:1485:0:0:0,-11.4391,-133.908 0/0:72:71,1:71:2790:1:40:0,-17.6785,-247.247 0/1:51:39,12:39:1531:12:478:-28.0185,0,-122.697 0/1:42:33,9:33:1265:9:360:-20.1211,0,-101.49 dDocent_Contig_4091 209 . N G 225.064 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=6;CIGAR=1X;DP=6;DPB=6;DPRA=0;EPP=16.0391;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=238;QR=0;RO=0;RPL=6;RPP=16.0391;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:5:0,5:0:0:5:197:-18.1062,-1.50515,0 1/1:1:0,1:0:0:1:41:-4.09457,-0.30103,0 dDocent_Contig_4092 29 . T C 352.032 . AB=0.204819;ABP=65.826;AC=2;AF=0.25;AN=8;AO=17;CIGAR=1X;DP=301;DPB=301;DPRA=0.380734;EPP=39.9253;EPPR=619.708;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=685;QR=11359;RO=284;RPL=0;RPP=39.9253;RPPR=619.708;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=284;SRP=619.708;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:114:114,0:114:4602:0:0:0,-34.3174,-414.083 0/0:104:104,0:104:4126:0:0:0,-31.3071,-371.312 0/1:31:20,11:20:815:11:443:-30.8933,0,-64.3323 0/1:52:46,6:46:1816:6:242:-6.50376,0,-148 dDocent_Contig_4093 43 . C T 578.029 . AB=0.423077;ABP=5.68288;AC=3;AF=0.375;AN=8;AO=24;CIGAR=1X;DP=85;DPB=85;DPRA=0;EPP=55.1256;EPPR=135.47;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=922;QR=2339;RO=61;RPL=0;RPP=55.1256;RPPR=135.47;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=61;SRP=135.47;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:10,5:10:387:5:191:-13.043,0,-30.6718 0/1:16:9,7:9:343:7:268:-19.6672,0,-26.4107 0/1:21:11,10:11:418:10:385:-28.6844,0,-31.648 0/0:33:31,2:31:1191:2:78:0,-2.53052,-100.084 dDocent_Contig_4094 98 . N G 54.184 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=4.60517;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=57;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:57:-5.41407,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_4095 180 . A G 2878.2 . AB=0.736842;ABP=40.0396;AC=5;AF=0.625;AN=8;AO=89;CIGAR=1X;DP=110;DPB=110;DPRA=0;EPP=196.271;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3524;QR=837;RO=21;RPL=89;RPP=196.271;RPPR=48.6112;RPR=0;RUN=1;SAF=0;SAP=196.271;SAR=89;SRF=0;SRP=48.6112;SRR=21;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:5,31:5:204:31:1240:-101.034,0,-7.90695 1/1:34:1,33:1:41:33:1306:-113.711,-6.14045,0 0/1:19:8,11:8:313:11:430:-33.3332,0,-22.8124 0/1:21:7,14:7:279:14:548:-43.3341,0,-19.1572 dDocent_Contig_4096 75 . A G 184.155 . AB=0.133333;ABP=143.143;AC=1;AF=0.125;AN=8;AO=17;CIGAR=1X;DP=327;DPB=327;DPRA=1.30282;EPP=39.9253;EPPR=669.652;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=648;QR=11577;RO=307;RPL=17;RPP=39.9253;RPPR=669.652;RPR=0;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=307;SRP=669.652;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:120:103,16:103:3849:16:612:-19.2114,0,-310.318 0/0:91:91,0:91:3492:0:0:0,-27.3937,-314.413 0/0:65:62,1:62:2305:1:36:0,-15.731,-204.071 0/0:51:51,0:51:1931:0:0:0,-15.3525,-174.034 dDocent_Contig_4097 95 . C T 3028.35 . AB=0.435714;ABP=13.0611;AC=4;AF=0.5;AN=8;AO=122;CIGAR=1X;DP=280;DPB=280;DPRA=0;EPP=267.93;EPPR=346.103;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4343;QR=5602;RO=158;RPL=122;RPP=267.93;RPPR=346.103;RPR=0;RUN=1;SAF=122;SAP=267.93;SAR=0;SRF=158;SRP=346.103;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:81:48,33:48:1705:33:1172:-81.4038,0,-129.352 0/1:64:27,37:27:959:37:1320:-99.8366,0,-67.3608 0/1:88:55,33:55:1945:33:1184:-80.378,0,-148.834 0/1:47:28,19:28:993:19:667:-46.2063,0,-75.5367 dDocent_Contig_4098 22 . G A 3132.55 . AB=0.56383;ABP=9.66332;AC=4;AF=0.5;AN=8;AO=106;CIGAR=1X;DP=188;DPB=188;DPRA=0;EPP=233.186;EPPR=181.071;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.962264;PAIREDR=0.939024;PAO=0;PQA=0;PQR=0;PRO=0;QA=4152;QR=3227;RO=82;RPL=0;RPP=233.186;RPPR=181.071;RPR=106;RUN=1;SAF=106;SAP=233.186;SAR=0;SRF=82;SRP=181.071;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:50:25,25:25:1000:25:963:-71.9113,0,-75.246 0/1:34:16,18:16:615:18:702:-53.268,0,-45.4339 0/1:68:31,37:31:1207:37:1473:-112.351,0,-88.4345 0/1:36:10,26:10:405:26:1014:-80.7148,0,-25.9733 dDocent_Contig_4099 7 . A C 31.4727 . AB=0.214286;ABP=22.8638;AC=0;AF=0;AN=8;AO=14;CIGAR=4X3M3X;DP=117;DPB=117;DPRA=0;EPP=33.4109;EPPR=217.986;GTI=0;LEN=1;MEANALT=1.5;MQM=12;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0.909091;PAO=0;PQA=0;PQR=0;PRO=0;QA=553;QR=3853;RO=99;RPL=0;RPP=33.4109;RPPR=217.986;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=99;SRP=217.986;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:22:19,3,0:19:751:3,0:117,0:0,-3.26497,-64.5598,-5.71957,-65.4629,-67.7601 0|0:47:45,2,0:45:1755:2,0:80,0:0,-11.8696,-155.915,-13.5463,-156.517,-158.062 0|0:28:18,6,3:18:683:6,3:237,117:-4.24386,-5.12236,-59.3501,0,-51.5691,-55.2762 0|0:20:17,3,0:17:664:3,0:119,0:0,-2.66256,-56.7335,-5.11751,-57.6365,-59.931 dDocent_Contig_4100 98 . N A 59.8796 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=4.60517;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=63;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:63:-5.98364,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_4101 18 . G A 9886.87 . AB=0.467532;ABP=6.53542;AC=4;AF=0.5;AN=8;AO=180;CIGAR=1X2M1X;DP=385;DPB=385;DPRA=0;EPP=393.875;EPPR=83.3548;GTI=0;LEN=1;MEANALT=2.75;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=5.55112e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7134;QR=1453;RO=37;RPL=0;RPP=393.875;RPPR=83.3548;RPR=180;RUN=1;SAF=180;SAP=393.875;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:94:12,37,45:12:474:37,45:1473,1791:-226.132,-108.464,-136.33,-82.2786,0,-107.736 1|0:91:7,38,45:7:269:38,45:1521,1792:-248.667,-125.478,-136.119,-103.226,0,-111.759 1|0:110:12,55,42:12:477:55,42:2150,1652:-269.725,-96.6008,-119.316,-137.46,0,-164.089 1|0:90:6,50,33:6:233:50,33:1990,1292:-249.154,-87.1068,-91.2004,-144.732,0,-153.943 dDocent_Contig_4102 14 . G A 146.763 . AB=0.3;ABP=9.95901;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=83;DPB=83;DPRA=0.952381;EPP=16.0391;EPPR=170.214;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=238;QR=3054;RO=77;RPL=0;RPP=16.0391;RPPR=170.214;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=77;SRP=170.214;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:24:24,0:24:947:0:0:0,-7.22472,-85.5333 0/0:32:32,0:32:1269:0:0:0,-9.63296,-114.469 0/1:20:14,6:14:554:6:238:-15.7732,0,-44.1813 0/0:7:7,0:7:284:0:0:0,-2.10721,-25.9334 dDocent_Contig_4103 65 . G A 150.457 . AB=0.173077;ABP=51.2838;AC=2;AF=0.25;AN=8;AO=9;CIGAR=1X;DP=88;DPB=88;DPRA=1.44444;EPP=5.18177;EPPR=174.557;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=357;QR=3094;RO=79;RPL=9;RPP=22.5536;RPPR=174.557;RPR=0;RUN=1;SAF=6;SAP=5.18177;SAR=3;SRF=79;SRP=174.557;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:25:25,0:25:987:0:0:0,-7.52575,-89.1326 0/1:35:29,6:29:1146:6:234:-10.8922,0,-92.8861 0/1:17:14,3:14:538:3:123:-6.34728,0,-43.6401 0/0:11:11,0:11:423:0:0:0,-3.31133,-38.4183 dDocent_Contig_4104 190 . T G 9983.28 . AB=0.825301;ABP=155.589;AC=6;AF=0.75;AN=8;AO=303;CIGAR=1X;DP=334;DPB=334;DPRA=0;EPP=660.966;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1.25;MQM=58.0858;MQMR=59.3667;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.966667;PAO=0;PQA=0;PQR=0;PRO=0;QA=11945;QR=1180;RO=30;RPL=303;RPP=660.966;RPPR=68.1545;RPR=0;RUN=1;SAF=0;SAP=660.966;SAR=303;SRF=0;SRP=68.1545;SRR=30;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:91:0,91:0:0:91:3608:-321.307,-27.3937,0 0/1:50:18,32:18:720:32:1263:-97.0772,0,-49.9167 1/1:77:2,75:2:75:75:2977:-260.749,-16.0605,0 0/1:116:10,105:10:385:105:4097:-320.071,0,-0.0858133 dDocent_Contig_4106 162 . A G 74.5142 . AB=0.136364;ABP=53.5464;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=102;DPB=102;DPRA=2.27586;EPP=16.0391;EPPR=211.472;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=238;QR=3624;RO=96;RPL=6;RPP=16.0391;RPPR=211.472;RPR=0;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=211.472;SRR=96;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:25:25,0:25:958:0:0:0,-7.52575,-86.5218 0/1:44:38,6:38:1410:6:238:-8.54833,0,-113.922 0/0:21:21,0:21:808:0:0:0,-6.32163,-73.0387 0/0:12:12,0:12:448:0:0:0,-3.61236,-40.6608 dDocent_Contig_4107 83 . C T 343.53 . AB=0.361702;ABP=10.8184;AC=2;AF=0.25;AN=8;AO=19;CIGAR=1X;DP=77;DPB=77;DPRA=2.51852;EPP=44.2683;EPPR=128.956;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.947368;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=621;QR=2071;RO=58;RPL=19;RPP=44.2683;RPPR=128.956;RPR=0;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:17,13:17:611:13:417:-28.8093,0,-46.2904 0/0:21:19,2:19:673:2:65:0,-0.148344,-54.7221 0/1:17:13,4:13:478:4:139:-7.73446,0,-38.2457 0/0:9:9,0:9:309:0:0:0,-2.70927,-28.1413 dDocent_Contig_4108 8 . G T 4923.09 . AB=0.811475;ABP=105.817;AC=6;AF=0.75;AN=8;AO=156;CIGAR=1X;DP=183;DPB=183;DPRA=0;EPP=341.76;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.987179;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6003;QR=904;RO=24;RPL=0;RPP=341.76;RPPR=55.1256;RPR=156;RUN=1;SAF=156;SAP=341.76;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:55:8,47:8:299:47:1808:-146.413,0,-10.7071 0/1:67:13,52:13:498:52:1990:-159.383,0,-25.2117 1/1:40:2,38:2:69:38:1473:-126.293,-5.48988,0 1/1:21:1,19:1:38:19:732:-62.414,-2.60306,0 dDocent_Contig_4109 8 . T C 569.241 . AB=0.151515;ABP=281.485;AC=3;AF=0.375;AN=8;AO=48;CIGAR=1X;DP=363;DPB=363;DPRA=0;EPP=107.241;EPPR=684.853;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.979167;PAIREDR=0.996815;PAO=0;PQA=0;PQR=0;PRO=0;QA=1852;QR=12084;RO=314;RPL=0;RPP=107.241;RPPR=684.853;RPR=48;RUN=1;SAF=48;SAP=107.241;SAR=0;SRF=314;SRP=684.853;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:84:68,16:68:2620:16:621:-30.9436,0,-210.705 0/1:113:101,11:101:3888:11:429:-5.11698,0,-316.188 0/0:99:91,8:91:3501:8:310:0,-1.53839,-286.954 0/1:67:54,13:54:2075:13:492:-24.4552,0,-166.813 dDocent_Contig_4110 19 . T A 10481.6 . AB=0.870629;ABP=344.25;AC=5;AF=0.625;AN=8;AO=321;CIGAR=1X;DP=358;DPB=358;DPRA=0;EPP=700.053;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=59.9533;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=12639;QR=1463;RO=37;RPL=0;RPP=700.053;RPPR=83.3548;RPR=321;RUN=1;SAF=321;SAP=700.053;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:99:9,90:9:358:90:3578:-292.238,0,-2.78121 0/1:98:15,83:15:593:83:3243:-262.449,0,-24.2072 0/1:89:13,76:13:512:76:2965:-240.171,0,-19.6337 1/1:72:0,72:0:0:72:2853:-256.892,-21.6742,0 dDocent_Contig_4111 21 . T C 1337.28 . AB=0.284946;ABP=77.7276;AC=3;AF=0.375;AN=8;AO=56;CIGAR=1X;DP=259;DPB=259;DPRA=0;EPP=124.613;EPPR=443.819;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2260;QR=8170;RO=203;RPL=0;RPP=124.613;RPPR=443.819;RPR=56;RUN=1;SAF=56;SAP=124.613;SAR=0;SRF=203;SRP=443.819;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:91:59,32:59:2369:32:1284:-88.4314,0,-185.964 0/1:66:52,14:52:2092:14:569:-31.6839,0,-168.581 0/0:73:70,3:70:2828:3:123:0,-10.5104,-243.148 0/1:29:22,7:22:881:7:284:-17.2041,0,-70.8684 dDocent_Contig_4112 106 . N T 134.286 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=5;CIGAR=2X;DP=5;DPB=5;DPRA=0;EPP=13.8677;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=146;QR=0;RO=0;RPL=0;RPP=13.8677;RPPR=0;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. 1|1:5:0,5:0:0:5:146:-13.4281,-1.50515,0 .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. dDocent_Contig_4113 25 . C G 493.771 . AB=0.5;ABP=3.0103;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X3M1X;DP=16;DPB=16;DPRA=3;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQM=55;MQMR=0;NS=4;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=117;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:6:0,0,4,1,1:0:0:0,4,1,1:0,161,39,41:-16.6393,-16.6393,-16.6393,-3.36761,-3.36761,-2.16349,-13.4356,-13.4356,-0.170243,-13.1346,-13.279,-13.279,0,-10.0756,-12.978 1|0:6:0,3,0,3,0:0:0:3,0,3,0:117,0,123,0:-20.1487,-10.5617,-9.65861,-20.1487,-10.5617,-20.1487,-9.98623,0,-9.98623,-9.08314,-20.1487,-10.5617,-20.1487,-9.98623,-20.1487 0|0:1:0,0,1,0,0:0:0:0,1,0,0:0,39,0,0:-3.87343,-3.87343,-3.87343,-0.30103,-0.30103,0,-3.87343,-3.87343,-0.30103,-3.87343,-3.87343,-3.87343,-0.30103,-3.87343,-3.87343 0|0:3:0,0,0,3,0:0:0:0,0,3,0:0,0,116,0:-10.817,-10.817,-10.817,-10.817,-10.817,-10.817,-0.90309,-0.90309,-0.90309,0,-10.817,-10.817,-10.817,-0.90309,-10.817 dDocent_Contig_4117 1 . N G 149.68 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=162;QR=0;RO=0;RPL=0;RPP=11.6962;RPPR=0;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:4:0,4:0:0:4:162:-14.967,-1.20412,0 ./.:.:.:.:.:.:.:. dDocent_Contig_4118 14 . C A 76.6127 . AB=0.134615;ABP=63.3104;AC=2;AF=0.25;AN=8;AO=7;CIGAR=1X;DP=77;DPB=77;DPRA=2.08;EPP=18.2106;EPPR=146.452;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=58.7429;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=275;QR=2788;RO=70;RPL=0;RPP=18.2106;RPPR=155.013;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=69;SRP=146.452;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:38:34,4:34:1352:4:160:-3.34429,0,-110.504 0/0:16:16,0:16:641:0:0:0,-4.81648,-58.025 0/1:14:11,3:11:431:3:115:-6.50957,0,-31.1084 0/0:9:9,0:9:364:0:0:0,-2.70927,-33.1244 dDocent_Contig_4119 11 . T A 7898.12 . AB=0.696356;ABP=85.7285;AC=8;AF=1;AN=8;AO=221;CIGAR=1X1M1D1X;DP=300;DPB=231.5;DPRA=0;EPP=482.906;EPPR=59.4686;GTI=0;LEN=1;MEANALT=2;MQM=59.9095;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=8605;QR=962;RO=26;RPL=0;RPP=482.906;RPPR=59.4686;RPR=221;RUN=1;SAF=221;SAP=482.906;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:150:8,26,116:8:304:26,116:1021,4528:-428.821,-347.257,-364.361,-59.0521,0,-49.0614 1|1:62:13,18,31:13:489:18,31:706,1227:-115.082,-60.9402,-95.5795,-18.0089,0,-48.7339 1|1:35:5,5,25:5:169:5,25:194,958:-79.3958,-64.9615,-77.1451,-2.29223,0,-8.43784 1|1:53:0,4,49:0:0:4,49:157,1892:-170.104,-157.191,-155.987,-14.7505,-1.44579,0 dDocent_Contig_4120 26 . T C 55.8937 . AB=0.0952381;ABP=271.963;AC=1;AF=0.125;AN=8;AO=24;CIGAR=1X;DP=689;DPB=689;DPRA=0.898072;EPP=55.1256;EPPR=1447.04;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=943;QR=26725;RO=665;RPL=0;RPP=55.1256;RPPR=1447.04;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=665;SRP=1447.04;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:203:203,0:203:8172:0:0:0,-61.1091,-734.998 0/1:189:171,18:171:6875:18:703:-6.68628,0,-561.507 0/0:137:131,6:131:5267:6:240:0,-19.2666,-451.887 0/0:160:160,0:160:6411:0:0:0,-48.1648,-576.723 dDocent_Contig_4122 9 . C T 8456.04 . AB=0.194622;ABP=1900.86;AC=4;AF=0.5;AN=8;AO=456;CIGAR=1X;DP=2343;DPB=2343;DPRA=0;EPP=993.202;EPPR=4094.06;GTI=0;LEN=1;MEANALT=1.5;MQM=57.2303;MQMR=59.8811;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.992038;PAO=0;PQA=0;PQR=0;PRO=0;QA=17423;QR=72024;RO=1884;RPL=0;RPP=993.202;RPPR=4094.06;RPR=456;RUN=1;SAF=456;SAP=993.202;SAR=0;SRF=1884;SRP=4094.06;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:616:504,111:504:19259:111:4260:-192.345,0,-1546.53 0/1:525:408,117:408:15674:117:4471:-238.894,0,-1251.48 0/1:645:521,122:521:19946:122:4642:-222.607,0,-1600.16 0/1:557:451,106:451:17145:106:4050:-196.749,0,-1374.07 dDocent_Contig_4125 45 . A C 13376.1 . AB=0.551724;ABP=15.8145;AC=4;AF=0.5;AN=8;AO=304;CIGAR=1X3M1X;DP=551;DPB=551;DPRA=0;EPP=663.138;EPPR=144.156;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=5.55112e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=11966;QR=2534;RO=65;RPL=0;RPP=663.138;RPPR=144.156;RPR=304;RUN=1;SAF=304;SAP=663.138;SAR=0;SRF=65;SRP=144.156;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:158:0,88,70:0:0:88,70:3468,2787:-515.172,-229.871,-203.38,-285.697,0,-264.625 1|0:128:4,96,27:4:158:96,27:3777,1056:-383.279,-73.798,-57.9009,-297.68,0,-302.553 1|0:160:33,73,54:33:1277:73,54:2871,2149:-298.272,-72.06,-154.965,-131.271,0,-219.897 1|0:105:28,47,29:28:1099:47,29:1850,1126:-145.877,-2.11585,-78.3517,-61.8061,0,-143.457 dDocent_Contig_4126 28 . G C 1874.48 . AB=0.167987;ABP=607.172;AC=4;AF=0.5;AN=8;AO=106;CIGAR=1X;DP=631;DPB=631;DPRA=0;EPP=233.186;EPPR=1143.03;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.99619;PAO=0;PQA=0;PQR=0;PRO=0;QA=4236;QR=16697;RO=525;RPL=0;RPP=233.186;RPPR=1143.03;RPR=106;RUN=1;SAF=106;SAP=233.186;SAR=0;SRF=525;SRP=1143.03;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:177:148,29:148:4519:29:1109:-46.8088,0,-353.613 0/1:185:150,35:150:5029:35:1417:-72.087,0,-396.974 0/1:199:175,24:175:5507:24:979:-28.5001,0,-435.833 0/1:70:52,18:52:1642:18:731:-45.0421,0,-126.965 dDocent_Contig_4127 8 . A T 11348.3 . AB=0.71977;ABP=221.579;AC=4;AF=0.5;AN=8;AO=375;CIGAR=1X;DP=521;DPB=521;DPRA=0;EPP=817.312;EPPR=320.045;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.997333;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=14402;QR=5541;RO=146;RPL=0;RPP=817.312;RPPR=320.045;RPR=375;RUN=1;SAF=375;SAP=817.312;SAR=0;SRF=146;SRP=320.045;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:199:60,139:60:2270:139:5355:-422.032,0,-144.614 0/1:108:38,70:38:1447:70:2686:-209.414,0,-97.9975 0/1:139:17,122:17:661:122:4660:-377.603,0,-17.984 0/1:75:31,44:31:1163:44:1701:-130.771,0,-82.389 dDocent_Contig_4128 10 . A G 760.632 . AB=0.236111;ABP=90.1105;AC=3;AF=0.375;AN=8;AO=37;CIGAR=1X;DP=209;DPB=209;DPRA=0;EPP=83.3548;EPPR=376.504;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=56.8779;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.598837;PAO=0;PQA=0;PQR=0;PRO=0;QA=1475;QR=6926;RO=172;RPL=0;RPP=83.3548;RPPR=376.504;RPR=37;RUN=1;SAF=37;SAP=83.3548;SAR=0;SRF=172;SRP=376.504;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:65:62,3:62:2498:3:120:0,-8.37905,-203.833 0/1:34:27,7:27:1080:7:277:-15.0642,0,-87.2504 0/1:69:52,17:52:2088:17:680:-40.7579,0,-156.951 0/1:41:31,10:31:1260:10:398:-23.8328,0,-96.9787 dDocent_Contig_4129 15 . T A 205.008 . AB=0.108225;ABP=310.974;AC=1;AF=0.125;AN=8;AO=35;CIGAR=1X;DP=524;DPB=524;DPRA=1.99556;EPP=79.0118;EPPR=1064.86;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1414;QR=19579;RO=489;RPL=0;RPP=79.0118;RPPR=1064.86;RPR=35;RUN=1;SAF=35;SAP=79.0118;SAR=0;SRF=489;SRP=1064.86;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:231:206,25:206:8241:25:1006:-21.2967,0,-671.688 0/0:140:134,6:134:5382:6:245:0,-19.7147,-461.78 0/0:75:75,0:75:2992:0:0:0,-22.5772,-269.362 0/0:78:74,4:74:2964:4:163:0,-8.42191,-251.787 dDocent_Contig_4130 140 . A T 35.5244 . AB=0.112676;ABP=95.5273;AC=1;AF=0.125;AN=8;AO=21;CIGAR=1X;DP=283;DPB=283;DPRA=0;EPP=48.6112;EPPR=571.936;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=737;QR=9456;RO=262;RPL=0;RPP=48.6112;RPPR=571.936;RPR=21;RUN=1;SAF=0;SAP=48.6112;SAR=21;SRF=0;SRP=571.936;SRR=262;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:71:63,8:63:2305:8:282:-4.34818,0,-186.326 0/0:105:96,9:96:3465:9:322:0,-2.28387,-282.726 0/0:53:52,1:52:1879:1:36:0,-12.3563,-165.785 0/0:54:51,3:51:1807:3:97:0,-7.20486,-153.85 dDocent_Contig_4131 14 . T C 72.2145 . AB=0.0697674;ABP=141.278;AC=0;AF=0;AN=8;AO=6;CIGAR=2M1X3M1X;DP=289;DPB=291.571;DPRA=1.27094;EPP=16.0391;EPPR=597.994;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=234;QR=10684;RO=274;RPL=0;RPP=16.0391;RPPR=597.994;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=274;SRP=597.994;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:86:71,6,9:71:2776:6,9:234,357:-8.01733,-10.1584,-236.575,0,-208.994,-225.519 0|0:111:111,0,0:111:4335:0,0:0,0:0,-33.4143,-390.168,-33.4143,-390.168,-390.168 0|0:35:35,0,0:35:1348:0,0:0,0:0,-10.536,-121.594,-10.536,-121.594,-121.594 0|0:57:57,0,0:57:2225:0,0:0,0:0,-17.1587,-200.454,-17.1587,-200.454,-200.454 dDocent_Contig_4133 8 . C T 31535.7 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=969;CIGAR=1X;DP=1028;DPB=1028;DPRA=0;EPP=2107.17;EPPR=131.127;GTI=0;LEN=1;MEANALT=1;MQM=59.9143;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.997936;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=37363;QR=2275;RO=59;RPL=0;RPP=2107.17;RPPR=131.127;RPR=969;RUN=1;SAF=969;SAP=2107.17;SAR=0;SRF=59;SRP=131.127;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:286:23,263:23:879:263:10155:-833.921,-6.66705,0 1/1:361:14,347:14:542:347:13397:-1155.99,-59.546,0 1/1:234:14,220:14:546:220:8457:-709.29,-20.9547,0 1/1:147:8,139:8:308:139:5354:-453.768,-16.1692,0 dDocent_Contig_4134 9 . A T 130.692 . AB=0.102273;ABP=365.745;AC=1;AF=0.125;AN=8;AO=52;CIGAR=1X;DP=923;DPB=923;DPRA=0;EPP=115.927;EPPR=1894.36;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1996;QR=33252;RO=871;RPL=0;RPP=115.927;RPPR=1894.36;RPR=52;RUN=1;SAF=52;SAP=115.927;SAR=0;SRF=871;SRP=1894.36;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:251:237,14:237:8997:14:536:0,-26.975,-760.884 0/0:268:263,5:263:10061:5:191:0,-63.1179,-887.588 0/1:264:237,27:237:9053:27:1037:-14.1661,0,-735.025 0/0:140:134,6:134:5141:6:232:0,-20.8953,-441.45 dDocent_Contig_4137 168 . C T 49.3066 . AB=0.129032;ABP=40.0654;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=86;DPB=86;DPRA=1.69091;EPP=11.6962;EPPR=181.071;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=163;QR=3230;RO=82;RPL=4;RPP=11.6962;RPPR=181.071;RPR=0;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=181.071;SRR=82;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:27,4:27:1082:4:163:-5.7265,0,-88.3299 0/0:38:38,0:38:1462:0:0:0,-11.4391,-131.813 0/0:7:7,0:7:284:0:0:0,-2.10721,-25.9334 0/0:10:10,0:10:402:0:0:0,-3.0103,-36.5396 dDocent_Contig_4138 36 . G A 1248.39 . AB=0.224409;ABP=170.573;AC=4;AF=0.5;AN=8;AO=57;CIGAR=1X;DP=254;DPB=254;DPRA=0;EPP=126.784;EPPR=430.79;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.4822;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=0.954315;PAO=0;PQA=0;PQR=0;PRO=0;QA=2277;QR=7756;RO=197;RPL=0;RPP=126.784;RPPR=430.79;RPR=57;RUN=1;SAF=57;SAP=126.784;SAR=0;SRF=197;SRP=430.79;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:114:89,25:89:3540:25:982:-54.3541,0,-284.322 0/1:39:23,16:23:920:16:654:-47.4518,0,-70.0871 0/1:69:57,12:57:2222:12:478:-22.5974,0,-176.663 0/1:32:28,4:28:1074:4:163:-5.42547,0,-87.3102 dDocent_Contig_4139 7 . A G 32.8934 . AB=0.130435;ABP=57.5803;AC=1;AF=0.125;AN=8;AO=10;CIGAR=1X;DP=281;DPB=281;DPRA=0.899123;EPP=24.725;EPPR=587.136;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=294;QR=10314;RO=269;RPL=0;RPP=24.725;RPPR=587.136;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=269;SRP=587.136;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:111:108,2:108:4147:2:69:0,-26.7489,-366.832 0/0:76:76,0:76:2902:0:0:0,-22.8783,-261.347 0/1:46:40,6:40:1539:6:199:-4.38602,0,-124.934 0/0:48:45,2:45:1726:2:26:0,-11.8884,-153.085 dDocent_Contig_4140 10 . T C 16964.9 . AB=0.44878;ABP=17.0242;AC=8;AF=1;AN=8;AO=276;CIGAR=1X3M;DP=615;DPB=615;DPRA=0;EPP=602.337;EPPR=100.727;GTI=0;LEN=1;MEANALT=2.25;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=11019;QR=1803;RO=45;RPL=0;RPP=602.337;RPPR=100.727;RPR=276;RUN=1;SAF=276;SAP=602.337;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:243:35,105,103:35:1407:105,103:4175,4129:-557.414,-224.221,-308.562,-227.777,0,-312.721 1|1:213:10,111,91:10:396:111,91:4391,3602:-622.165,-263.822,-262.999,-328.764,0,-333.961 1|1:100:0,48,52:0:0:48,52:1903,2091:-329.338,-172.709,-158.26,-157.027,0,-141.374 1|1:59:0,29,30:0:0:29,30:1138,1197:-192.558,-98.9748,-90.2449,-93.9782,0,-84.9473 dDocent_Contig_4142 47 . C T 40.1595 . AB=0.1;ABP=128.087;AC=2;AF=0.25;AN=8;AO=9;CIGAR=1X;DP=284;DPB=284;DPRA=0.463918;EPP=22.5536;EPPR=597.994;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=361;QR=10469;RO=274;RPL=0;RPP=22.5536;RPPR=597.994;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=274;SRP=597.994;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:96:96,0:96:3639:0:0:0,-28.8989,-327.604 0/0:98:98,0:98:3796:0:0:0,-29.5009,-341.678 0/1:61:54,6:54:2056:6:242:-3.83227,0,-166.954 0/1:29:26,3:26:978:3:119:-2.36552,0,-79.5819 dDocent_Contig_4143 16 . C T 109.957 . AB=0.222222;ABP=21.1059;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=96;DPB=96;DPRA=1.17391;EPP=3.0103;EPPR=198.443;GTI=0;LEN=1;MEANALT=1;MQM=55;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.877778;PAO=0;PQA=0;PQR=0;PRO=0;QA=221;QR=3619;RO=90;RPL=0;RPP=16.0391;RPPR=198.443;RPR=6;RUN=1;SAF=3;SAP=3.0103;SAR=3;SRF=90;SRP=198.443;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:27:27,0:27:1096:0:0:0,-8.12781,-98.9231 0/0:25:25,0:25:996:0:0:0,-7.52575,-89.9344 0/1:27:21,6:21:843:6:221:-12.0926,0,-68.0537 0/0:17:17,0:17:684:0:0:0,-5.11751,-61.8878 dDocent_Contig_4144 13 . C G 8846.41 . AB=0.619048;ABP=59.8822;AC=4;AF=0.5;AN=8;AO=286;CIGAR=1X;DP=462;DPB=462;DPRA=0;EPP=624.051;EPPR=385.189;GTI=0;LEN=1;MEANALT=1;MQM=59.9091;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=11427;QR=7022;RO=176;RPL=0;RPP=624.051;RPPR=385.189;RPR=286;RUN=1;SAF=286;SAP=624.051;SAR=0;SRF=176;SRP=385.189;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:217:101,116:101:4039:116:4644:-352.431,0,-298.159 0/1:123:36,87:36:1419:87:3466:-274.949,0,-90.9339 0/1:64:22,42:22:883:42:1686:-132.696,0,-60.5105 0/1:58:17,41:17:681:41:1631:-129.556,0,-44.1539 dDocent_Contig_4145 153 . G T 1752.19 . AB=0.551282;ABP=4.79202;AC=5;AF=0.625;AN=8;AO=57;CIGAR=1X;DP=93;DPB=93;DPRA=0;EPP=126.784;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2277;QR=1445;RO=36;RPL=0;RPP=126.784;RPPR=81.1833;RPR=57;RUN=1;SAF=0;SAP=126.784;SAR=57;SRF=0;SRP=81.1833;SRR=36;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:33:11,22:11:445:22:888:-70.2909,0,-30.4711 0/1:28:20,8:20:796:8:320:-20.7388,0,-63.5259 1/1:15:1,14:1:40:14:565:-47.1968,-0.519771,0 0/1:17:4,13:4:164:13:504:-40.583,0,-10.0324 dDocent_Contig_4146 26 . T C 8198.55 . AB=0.713311;ABP=118.81;AC=5;AF=0.625;AN=8;AO=254;CIGAR=1X;DP=338;DPB=338;DPRA=0;EPP=554.564;EPPR=183.243;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.988189;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=10124;QR=3275;RO=83;RPL=0;RPP=554.564;RPPR=183.243;RPR=254;RUN=1;SAF=254;SAP=554.564;SAR=0;SRF=83;SRP=183.243;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:100:27,73:27:1086:73:2922:-232.968,0,-67.9211 0/1:97:17,80:17:674:80:3136:-253.111,0,-31.7882 0/1:96:39,56:39:1515:56:2256:-174.262,0,-107.645 1/1:45:0,45:0:0:45:1810:-163.106,-13.5464,0 dDocent_Contig_4147 10 . C A 113.333 . AB=0.145455;ABP=63.0614;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=142;DPB=142;DPRA=1.89655;EPP=20.3821;EPPR=293.988;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=318;QR=5408;RO=134;RPL=0;RPP=20.3821;RPPR=293.988;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=134;SRP=293.988;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:39:39,0:39:1578:0:0:0,-11.7402,-142.252 0/0:22:22,0:22:881:0:0:0,-6.62266,-79.5983 0/1:55:47,8:47:1896:8:318:-12.4302,0,-154.282 0/0:26:26,0:26:1053:0:0:0,-7.82678,-95.0576 dDocent_Contig_4150 72 . T A 12524.9 . AB=0.784;ABP=90.5814;AC=7;AF=0.875;AN=8;AO=411;CIGAR=1X;DP=449;DPB=449;DPRA=0;EPP=895.485;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=14717;QR=1306;RO=37;RPL=411;RPP=895.485;RPPR=83.3548;RPR=0;RUN=1;SAF=411;SAP=895.485;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:126:2,124:2:70:124:4438:-392.903,-31.2825,0 1/1:115:3,112:3:97:112:4017:-352.619,-25.569,0 0/1:125:26,98:26:934:98:3489:-276.779,0,-46.9626 1/1:83:6,77:6:205:77:2773:-230.989,-6.20201,0 dDocent_Contig_4152 33 . T C 150.063 . AB=0.107527;ABP=251.866;AC=2;AF=0.25;AN=8;AO=23;CIGAR=1X1M1I7M;DP=424;DPB=426.556;DPRA=2.73913;EPP=52.9542;EPPR=860.742;GTI=0;LEN=1;MEANALT=2.66667;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.95443;PAO=0;PQA=0;PQR=0;PRO=0;QA=919;QR=15550;RO=395;RPL=0;RPP=52.9542;RPPR=860.742;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=395;SRP=860.742;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:192:186,3:186:7346:3:112:0,-46.8406,-650.39 0|1:119:104,14:104:4071:14:567:-15.4418,0,-330.49 0|1:67:60,6:60:2354:6:240:-1.70811,0,-191.777 0|0:46:45,0:45:1779:0:0:0,-13.5463,-159.932 dDocent_Contig_4153 36 . T A 37.3194 . AB=0.10101;ABP=139.901;AC=1;AF=0.125;AN=8;AO=12;CIGAR=1X;DP=394;DPB=394;DPRA=0.931373;EPP=29.068;EPPR=825.998;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=59.9789;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.986807;PAO=0;PQA=0;PQR=0;PRO=0;QA=451;QR=12279;RO=379;RPL=0;RPP=29.068;RPPR=825.998;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=379;SRP=825.998;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:149:149,0:149:4790:0:0:0,-44.8535,-431.272 0/1:99:87,10:87:2872:10:377:-4.82877,0,-229.286 0/0:91:89,2:89:2872:2:74:0,-20.3679,-251.69 0/0:55:54,0:54:1745:0:0:0,-16.2556,-157.243 dDocent_Contig_4154 9 . T C 67.1226 . AB=0.137931;ABP=168.117;AC=1;AF=0.125;AN=8;AO=77;CIGAR=2X;DP=1544;DPB=1544;DPRA=0;EPP=37.5565;EPPR=3097.36;GTI=0;LEN=1;MEANALT=3.25;MQM=23.4805;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.0909091;PAIREDR=0.994386;PAO=0;PQA=0;PQR=0;PRO=0;QA=2892;QR=55611;RO=1425;RPL=0;RPP=170.214;RPPR=3097.36;RPR=77;RUN=1;SAF=56;SAP=37.5565;SAR=21;SRF=1425;SRP=3097.36;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:617:580,21:580:22616:21:786:0,-140.222,-1992.85 0|0:443:402,25:402:15716:25:941:0,-90.1733,-1374.73 0|0:339:320,11:320:12476:11:429:0,-73.3791,-1095.64 0|1:145:123,20:123:4803:20:736:-7.80917,0,-388.909 dDocent_Contig_4155 13 . A G 160.312 . AB=0.126984;ABP=155.289;AC=3;AF=0.375;AN=8;AO=16;CIGAR=1X;DP=172;DPB=172;DPRA=0.913043;EPP=37.7539;EPPR=333.13;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=0.987179;PAO=0;PQA=0;PQR=0;PRO=0;QA=627;QR=6171;RO=156;RPL=0;RPP=37.7539;RPPR=341.76;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=155;SRP=333.13;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:34:29,5:29:1139:5:204:-8.50901,0,-92.5623 0/1:54:47,7:47:1882:7:259:-7.40261,0,-153.328 0/0:46:46,0:46:1827:0:0:0,-13.8474,-164.644 0/1:38:34,4:34:1323:4:164:-3.71076,0,-107.897 dDocent_Contig_4156 188 . T C 2057.75 . AB=0.37037;ABP=10.8919;AC=6;AF=0.75;AN=8;AO=64;CIGAR=1X;DP=98;DPB=98;DPRA=0;EPP=141.985;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2477;QR=1309;RO=34;RPL=64;RPP=141.985;RPPR=76.8404;RPR=0;RUN=1;SAF=0;SAP=141.985;SAR=64;SRF=0;SRP=76.8404;SRR=34;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:31:0,31:0:0:31:1227:-110.709,-9.33193,0 1/1:13:0,13:0:0:13:500:-45.3407,-3.91339,0 0/1:32:25,7:25:954:7:251:-13.2907,0,-76.5305 0/1:22:9,13:9:355:13:499:-38.6282,0,-25.6883 dDocent_Contig_4157 48 . T A 58.4535 . AB=0.135593;ABP=71.062;AC=2;AF=0.25;AN=8;AO=8;CIGAR=1X;DP=96;DPB=96;DPRA=1.59459;EPP=20.3821;EPPR=194.1;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=0;PAIREDR=0.897727;PAO=0;PQA=0;PQR=0;PRO=0;QA=275;QR=3249;RO=88;RPL=0;RPP=20.3821;RPPR=194.1;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=88;SRP=194.1;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:42:36,6:36:1278:6:210:-6.59457,0,-102.658 0/0:31:31,0:31:1203:0:0:0,-9.33193,-108.552 0/1:17:15,2:15:538:2:65:-1.05406,0,-43.6257 0/0:6:6,0:6:230:0:0:0,-1.80618,-21.0668 dDocent_Contig_4159 164 . T A 64.1221 . AB=0.149254;ABP=74.6041;AC=3;AF=0.375;AN=8;AO=11;CIGAR=1X;DP=117;DPB=117;DPRA=0;EPP=26.8965;EPPR=81.7569;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=359;QR=3916;RO=106;RPL=0;RPP=26.8965;RPPR=81.7569;RPR=11;RUN=1;SAF=0;SAP=26.8965;SAR=11;SRF=0;SRP=233.186;SRR=106;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:21,4:21:812:4:122:-3.75677,0,-65.8738 0/1:26:23,3:23:826:3:103:-1.78319,0,-66.8123 0/0:50:49,1:49:1825:1:35:0,-11.5529,-160.987 0/1:16:13,3:13:453:3:99:-4.42092,0,-36.2787 dDocent_Contig_4160 141 . G T 64.29 . AB=0.210526;ABP=16.8392;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=67;DPB=67;DPRA=1.1875;EPP=11.6962;EPPR=139.813;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=140;QR=2293;RO=63;RPL=0;RPP=11.6962;RPPR=139.813;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=139.813;SRR=63;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:15,4:15:550:4:140:-7.22481,0,-44.1194 0/0:20:20,0:20:738:0:0:0,-6.0206,-66.7504 0/0:22:22,0:22:800:0:0:0,-6.62266,-72.3214 0/0:6:6,0:6:205:0:0:0,-1.80618,-18.7837 dDocent_Contig_4161 183 . C T 6066.95 . AB=0.821277;ABP=213.699;AC=4;AF=0.5;AN=8;AO=193;CIGAR=1X;DP=235;DPB=235;DPRA=0;EPP=422.104;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=59.9119;MQMR=58.7143;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=0.97619;PAO=0;PQA=0;PQR=0;PRO=0;QA=7574;QR=1618;RO=42;RPL=193;RPP=422.104;RPPR=94.2121;RPR=0;RUN=1;SAF=0;SAP=422.104;SAR=193;SRF=0;SRP=94.2121;SRR=42;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:49:7,42:7:285:42:1675:-136.23,0,-8.07881 0/1:93:18,75:18:689:75:2927:-235.483,0,-34.3338 0/1:71:11,60:11:413:60:2349:-190.196,0,-16.1274 0/1:22:6,16:6:231:16:623:-49.7749,0,-14.5283 dDocent_Contig_4162 108 . A G 1464.51 . AB=0.354098;ABP=59.4045;AC=4;AF=0.5;AN=8;AO=108;CIGAR=1X;DP=305;DPB=305;DPRA=0;EPP=237.529;EPPR=428.619;GTI=0;LEN=1;MEANALT=1.25;MQM=25.7315;MQMR=59.9949;NS=4;NUMALT=1;ODDS=0;PAIRED=0.0277778;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3673;QR=6637;RO=196;RPL=0;RPP=237.529;RPPR=428.619;RPR=108;RUN=1;SAF=0;SAP=237.529;SAR=108;SRF=0;SRP=428.619;SRR=196;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:93:62,31:62:2106:31:1069:-42.0324,0,-161.815 0/1:119:70,48:70:2379:48:1609:-70.9383,0,-178.772 0/1:45:24,21:24:784:21:717:-34.417,0,-57.3152 0/1:48:40,8:40:1368:8:278:-4.05302,0,-108.965 dDocent_Contig_4163 25 . C T 7097.37 . AB=0.551487;ABP=13.0726;AC=4;AF=0.5;AN=8;AO=241;CIGAR=1X;DP=437;DPB=437;DPRA=0;EPP=526.335;EPPR=428.619;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.983402;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=9395;QR=7674;RO=196;RPL=0;RPP=526.335;RPPR=428.619;RPR=241;RUN=1;SAF=241;SAP=526.335;SAR=0;SRF=196;SRP=428.619;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:123:34,89:34:1317:89:3470:-275.357,0,-81.778 0/1:144:106,38:106:4162:38:1509:-92.718,0,-331.234 0/1:68:21,47:21:820:47:1797:-141.493,0,-53.6509 0/1:102:35,67:35:1375:67:2619:-205.157,0,-93.313 dDocent_Contig_4166 46 . G A 7582.61 . AB=0.836842;ABP=190.26;AC=5;AF=0.625;AN=8;AO=231;CIGAR=1X;DP=267;DPB=267;DPRA=0;EPP=504.62;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=9302;QR=1457;RO=36;RPL=0;RPP=504.62;RPPR=81.1833;RPR=231;RUN=1;SAF=231;SAP=504.62;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:80:12,68:12:491:68:2737:-222.359,0,-20.4586 1/1:77:5,72:5:204:72:2912:-243.422,-4.43528,0 0/1:60:12,48:12:488:48:1924:-155.298,0,-26.2097 0/1:50:7,43:7:274:43:1729:-140.773,0,-9.97354 dDocent_Contig_4167 12 . G A 11922.2 . AB=0.131184;ABP=1579.13;AC=4;AF=0.5;AN=8;AO=175;CIGAR=1X3M2X;DP=1334;DPB=1334;DPRA=0;EPP=383.018;EPPR=1518.7;GTI=0;LEN=1;MEANALT=4.5;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6865;QR=27101;RO=698;RPL=0;RPP=383.018;RPPR=1518.7;RPR=175;RUN=1;SAF=175;SAP=383.018;SAR=0;SRF=698;SRP=1518.7;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:348:191,117,36:191:7419:117,36:4531,1421:-314.711,0,-574.386,-255.278,-492.678,-854.048 0|1:397:210,160,20:210:8158:160,20:6182,793:-444.501,0,-622.177,-442.439,-605.064,-1106.76 0|1:332:169,88,72:169:6555:88,72:3383,2838:-226.841,0,-512.045,-44.2187,-305.042,-561.087 0|1:257:128,78,47:128:4969:78,47:3038,1813:-211.161,0,-384.796,-100.823,-259.406,-494.949 dDocent_Contig_4168 8 . T A 133.746 . AB=0.285714;ABP=11.386;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=96;DPB=96;DPRA=0.84;EPP=16.0391;EPPR=189.853;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.4667;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.988889;PAO=0;PQA=0;PQR=0;PRO=0;QA=227;QR=3439;RO=90;RPL=0;RPP=16.0391;RPPR=198.443;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=89;SRP=189.853;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:18:18,0:18:689:0:0:0,-5.41854,-62.3419 0/0:38:38,0:38:1449:0:0:0,-11.4391,-130.688 0/1:21:15,6:15:577:6:227:-14.4715,0,-43.685 0/0:19:19,0:19:724:0:0:0,-5.71957,-65.4902 dDocent_Contig_4169 6 . C A 304.187 . AB=0.413793;ABP=4.88226;AC=1;AF=0.125;AN=8;AO=12;CIGAR=1X;DP=106;DPB=106;DPRA=1.12987;EPP=29.068;EPPR=207.129;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.916667;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=440;QR=3656;RO=94;RPL=0;RPP=29.068;RPPR=207.129;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=94;SRP=207.129;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:17,12:17:663:12:440:-31.2146,0,-51.2772 0/0:44:44,0:44:1712:0:0:0,-13.2453,-154.335 0/0:25:25,0:25:969:0:0:0,-7.52575,-87.523 0/0:8:8,0:8:312:0:0:0,-2.40824,-28.4449 dDocent_Contig_4170 158 . A T 5698.96 . AB=0.665049;ABP=51.7525;AC=5;AF=0.625;AN=8;AO=200;CIGAR=1X;DP=269;DPB=269;DPRA=0;EPP=411.638;EPPR=120.112;GTI=0;LEN=1;MEANALT=1;MQM=40;MQMR=46.6232;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7506;QR=2550;RO=69;RPL=197;RPP=411.638;RPPR=120.112;RPR=3;RUN=1;SAF=0;SAP=437.305;SAR=200;SRF=0;SRP=152.842;SRR=69;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:63:0,63:0:0:63:2399:-202.318,-18.9649,0 0/1:97:43,54:43:1561:54:1977:-138.287,0,-109.867 0/1:63:19,44:19:717:44:1646:-121.13,0,-43.0745 0/1:46:7,39:7:272:39:1484:-111.753,0,-10.612 dDocent_Contig_4171 76 . A C 1081.36 . AB=0.482353;ABP=3.24022;AC=4;AF=0.5;AN=8;AO=41;CIGAR=1X;DP=85;DPB=85;DPRA=0;EPP=92.0407;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=0.954545;PAO=0;PQA=0;PQR=0;PRO=0;QA=1526;QR=1626;RO=44;RPL=41;RPP=92.0407;RPPR=98.5551;RPR=0;RUN=1;SAF=41;SAP=92.0407;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:8,5:8:296:5:171:-11.8105,0,-23.0808 0/1:26:12,14:12:452:14:544:-41.4793,0,-33.2004 0/1:32:16,16:16:587:16:591:-43.8953,0,-43.5337 0/1:14:8,6:8:291:6:220:-15.9403,0,-22.3254 dDocent_Contig_4172 22 . T A 121.51 . AB=0;ABP=0;AC=1;AF=0.125;AN=8;AO=14;CIGAR=3M1X10M;DP=322;DPB=322.143;DPRA=0;EPP=33.4109;EPPR=589.308;GTI=0;LEN=1;MEANALT=6;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=0.857143;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=565;QR=10546;RO=270;RPL=0;RPP=33.4109;RPPR=589.308;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=270;SRP=589.308;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:68:54,8,0,0:54:2096:8,0,0:306,0,0:-8.85952,0,-169.817,-25.1151,-172.225,-197.333,-25.1151,-172.225,-197.333,-197.333 0|0:113:95,2,2,7:95:3718:2,2,7:78,71,283:0,-22.1867,-327.281,-22.8191,-322.101,-327.91,-5.25852,-304.55,-305.179,-308.854 0|0:92:79,0,0,7:79:3090:0,0,7:0,0,282:0,-23.7814,-277.836,-23.7814,-277.836,-277.836,-0.518204,-254.592,-254.592,-252.485 0|0:49:42,0,6,0:42:1642:0,6,0:0,222,0:-5.48398,-18.1272,-153.138,0,-134.98,-133.173,-18.1272,-153.138,-134.98,-153.138 dDocent_Contig_4173 19 . A G 2412.26 . AB=0.611111;ABP=16.5217;AC=5;AF=0.625;AN=8;AO=77;CIGAR=1X3M;DP=126;DPB=126;DPRA=0;EPP=170.214;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1.75;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3077;QR=1591;RO=40;RPL=0;RPP=170.214;RPPR=89.8692;RPR=77;RUN=1;SAF=77;SAP=170.214;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:45:12,0,33:12:476:0,33:0,1336:-106.951,-110.564,-149.744,0,-39.5788,-29.6448 0|1:24:9,2,13:9:362:2,13:80,495:-37.8632,-33.9797,-63.22,0,-23.2456,-25.9219 0|1:46:19,6,21:19:753:6,21:239,841:-63.5617,-49.6007,-109.772,0,-42.296,-55.6559 1|1:11:0,1,10:0:0:1,10:38,405:-36.9138,-33.7995,-33.4985,-3.49624,0,-0.485939 dDocent_Contig_4174 6 . C A 4903.58 . AB=0.58804;ABP=23.275;AC=4;AF=0.5;AN=8;AO=177;CIGAR=1X;DP=301;DPB=301;DPRA=0;EPP=387.361;EPPR=272.273;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.41129;PAO=0;PQA=0;PQR=0;PRO=0;QA=6498;QR=4813;RO=124;RPL=0;RPP=387.361;RPPR=272.273;RPR=177;RUN=1;SAF=177;SAP=387.361;SAR=0;SRF=124;SRP=272.273;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:109:41,68:41:1597:68:2508:-193.146,0,-111.181 0/1:94:39,55:39:1501:55:2004:-152.329,0,-107.066 0/1:54:28,26:28:1091:26:960:-70.4633,0,-82.2377 0/1:44:16,28:16:624:28:1026:-79.4095,0,-43.2549 dDocent_Contig_4176 13 . A G 165.067 . AB=0.153846;ABP=70.66;AC=1;AF=0.125;AN=8;AO=10;CIGAR=1X;DP=272;DPB=272;DPRA=0.942029;EPP=24.725;EPPR=571.936;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=409;QR=10352;RO=262;RPL=0;RPP=24.725;RPPR=571.936;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=262;SRP=571.936;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:76:76,0:76:3010:0:0:0,-22.8783,-270.98 0/0:94:94,0:94:3710:0:0:0,-28.2968,-333.922 0/1:65:55,10:55:2164:10:409:-17.6036,0,-175.378 0/0:37:37,0:37:1468:0:0:0,-11.1381,-132.369 dDocent_Contig_4178 9 . T A 386.643 . AB=0.163265;ABP=147.79;AC=3;AF=0.375;AN=8;AO=27;CIGAR=2X;DP=273;DPB=273;DPRA=0;EPP=61.6401;EPPR=535.021;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1060;QR=9587;RO=245;RPL=0;RPP=61.6401;RPPR=535.021;RPR=27;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=245;SRP=535.021;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:126:123,3:123:4798:3:117:0,-27.0199,-420.89 0|1:104:84,20:84:3294:20:785:-39.6681,0,-265.254 0|1:32:28,3:28:1102:3:118:-1.28031,0,-89.7518 0|1:11:10,1:10:393:1:40:-0.684349,0,-32.4165 dDocent_Contig_4180 67 . A G 38.5873 . AB=0.108108;ABP=101.724;AC=2;AF=0.25;AN=8;AO=12;CIGAR=1X;DP=199;DPB=199;DPRA=1.04861;EPP=29.068;EPPR=406.904;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=467;QR=7043;RO=186;RPL=12;RPP=29.068;RPPR=406.904;RPR=0;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=186;SRP=406.904;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:48:48,0:48:1826:0:0:0,-14.4494,-164.592 0/0:77:72,4:72:2720:4:161:0,-8.3557,-230.126 0/1:46:41,5:41:1534:5:198:-4.35,0,-124.485 0/1:28:25,3:25:963:3:108:-1.64488,0,-78.5554 dDocent_Contig_4181 7 . T A 6510.32 . AB=0.80315;ABP=104.386;AC=6;AF=0.75;AN=8;AO=218;CIGAR=1X;DP=251;DPB=251;DPRA=0;EPP=476.391;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=58.5642;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7979;QR=1257;RO=33;RPL=0;RPP=476.391;RPPR=74.6689;RPR=218;RUN=1;SAF=218;SAP=476.391;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:89:7,82:7:269:82:3010:-246.467,-2.21748,0 0/1:106:23,83:23:877:83:3044:-242.195,0,-47.339 1/1:35:1,34:1:33:34:1251:-109.551,-7.23692,0 0/1:21:2,19:2:78:19:674:-54.647,0,-1.08184 dDocent_Contig_4183 58 . C A 3316.56 . AB=0.694444;ABP=26.6552;AC=6;AF=0.75;AN=8;AO=98;CIGAR=1X;DP=120;DPB=120;DPRA=0;EPP=215.815;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3937;QR=881;RO=22;RPL=98;RPP=215.815;RPPR=50.7827;RPR=0;RUN=1;SAF=98;SAP=215.815;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:54:16,38:16:635:38:1520:-120.787,0,-41.2266 1/1:41:0,41:0:0:41:1652:-148.906,-12.3422,0 0/1:18:6,12:6:246:12:481:-38.2232,0,-17.1016 1/1:7:0,7:0:0:7:284:-25.934,-2.10721,0 dDocent_Contig_4184 65 . C T 175.173 . AB=0.32;ABP=10.0459;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=89;DPB=89;DPRA=1.17188;EPP=20.3821;EPPR=176.728;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=282;QR=3050;RO=80;RPL=8;RPP=20.3821;RPPR=176.728;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=80;SRP=176.728;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:16,8:16:585:8:282:-18.3132,0,-45.5768 0/0:18:18,0:18:685:0:0:0,-5.41854,-61.9764 0/0:30:30,0:30:1162:0:0:0,-9.0309,-104.879 0/0:16:16,0:16:618:0:0:0,-4.81648,-55.9599 dDocent_Contig_4185 16 . C T 15739.6 . AB=0.880866;ABP=352.022;AC=6;AF=0.75;AN=8;AO=460;CIGAR=1X;DP=496;DPB=496;DPRA=0;EPP=1001.89;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.972222;PAO=0;PQA=0;PQR=0;PRO=0;QA=18561;QR=1414;RO=36;RPL=0;RPP=1001.89;RPPR=81.1833;RPR=460;RUN=1;SAF=460;SAP=1001.89;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:133:16,117:16:640:117:4730:-385.547,0,-17.8932 0/1:144:17,127:17:661:127:5124:-417.652,0,-16.4624 1/1:125:3,122:3:113:122:4898:-430.161,-27.0927,0 1/1:94:0,94:0:0:94:3809:-342.794,-28.2968,0 dDocent_Contig_4186 7 . A G 162.356 . AB=0.211268;ABP=54.4222;AC=2;AF=0.25;AN=8;AO=16;CIGAR=1X;DP=177;DPB=177;DPRA=0.404167;EPP=37.7539;EPPR=352.617;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=462;QR=6164;RO=161;RPL=0;RPP=37.7539;RPPR=352.617;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=161;SRP=352.617;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:37:30,7:30:1148:7:193:-6.50072,0,-92.4814 0/1:34:26,8:26:1002:8:243:-11.9287,0,-80.2558 0/0:80:80,0:80:3058:0:0:0,-24.0824,-275.383 0/0:26:25,1:25:956:1:26:0,-5.22695,-83.755 dDocent_Contig_4187 121 . A G 187.512 . AB=0.245902;ABP=37.2199;AC=3;AF=0.375;AN=8;AO=15;CIGAR=1X;DP=66;DPB=66;DPRA=4.06667;EPP=35.5824;EPPR=111.584;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=443;QR=1644;RO=50;RPL=0;RPP=35.5824;RPPR=111.584;RPR=15;RUN=1;SAF=0;SAP=35.5824;SAR=15;SRF=0;SRP=111.584;SRR=50;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:18,4:18:578:4:112:-3.40564,0,-45.3639 0/1:25:19,6:19:646:6:202:-10.9848,0,-50.9351 0/1:13:8,5:8:260:5:129:-7.95131,0,-19.8047 0/0:5:5,0:5:160:0:0:0,-1.50515,-14.7158 dDocent_Contig_4188 70 . T C 19878.2 . AB=0.864943;ABP=405.581;AC=6;AF=0.75;AN=8;AO=600;CIGAR=1X;DP=658;DPB=658;DPRA=0;EPP=1305.89;EPPR=122.441;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=23592;QR=2133;RO=55;RPL=600;RPP=1305.89;RPPR=122.441;RPR=0;RUN=1;SAF=600;SAP=1305.89;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:181:0,178:0:0:178:6992:-628.584,-53.5833,0 0/1:264:38,226:38:1479:226:8891:-720.235,0,-53.8979 1/1:129:8,121:8:300:121:4745:-399.627,-11.4817,0 0/1:84:9,75:9:354:75:2964:-241.573,0,-6.93375 dDocent_Contig_4189 27 . G A 102.877 . AB=0.114286;ABP=138.696;AC=1;AF=0.125;AN=8;AO=12;CIGAR=1X3M1X;DP=332;DPB=332;DPRA=1.38767;EPP=29.068;EPPR=691.367;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=475;QR=12249;RO=317;RPL=0;RPP=29.068;RPPR=691.367;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=317;SRP=691.367;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:112:111,0:111:4299:0:0:0,-33.4143,-386.525 0|1:105:92,12:92:3553:12:475:-11.3846,0,-288.138 0|0:74:73,0:73:2808:0:0:0,-21.9752,-252.529 0|0:41:41,0:41:1589:0:0:0,-12.3422,-143.265 dDocent_Contig_4190 95 . A G 164.587 . AB=0.192982;ABP=49.6779;AC=1;AF=0.125;AN=8;AO=11;CIGAR=1X;DP=241;DPB=241;DPRA=0.929348;EPP=26.8965;EPPR=502.449;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=382;QR=7901;RO=230;RPL=11;RPP=26.8965;RPPR=502.449;RPR=0;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=230;SRP=502.449;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:60:60,0:60:2041:0:0:0,-18.0618,-183.966 0/0:69:69,0:69:2391:0:0:0,-20.7711,-215.456 0/1:57:46,11:46:1574:11:382:-17.5556,0,-124.792 0/0:55:55,0:55:1895:0:0:0,-16.5566,-170.832 dDocent_Contig_4192 14 . C A 92279.6 . AB=0;ABP=0;AC=0;AF=0;AN=8;AO=150;CIGAR=1X1M1X;DP=2903;DPB=2903;DPRA=0;EPP=328.731;EPPR=113.755;GTI=0;LEN=1;MEANALT=3.25;MQM=59.8667;MQMR=60;NS=4;NUMALT=2;ODDS=1.11022e-16;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5934;QR=2015;RO=51;RPL=0;RPP=328.731;RPPR=113.755;RPR=150;RUN=1;SAF=150;SAP=328.731;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:850:22,38,789:22:863:38,789:1503,31571:-2685.62,-2568.55,-2628.08,-166.548,-113.821,0 0|0:832:14,44,771:14:555:44,771:1726,30694:-2628.33,-2490.62,-2523.06,-186.411,-90.1763,0 0|0:811:9,35,765:9:352:35,765:1393,30674:-2635.63,-2523.65,-2542.05,-201.352,-115.587,0 0|0:410:6,33,371:6:245:33,371:1312,14837:-1277.77,-1171.56,-1181.84,-91.465,-3.67682,0 dDocent_Contig_4194 118 . T C 276.926 . AB=0.142857;ABP=251.179;AC=1;AF=0.125;AN=8;AO=57;CIGAR=1X;DP=668;DPB=668;DPRA=0;EPP=126.784;EPPR=1329.78;GTI=0;LEN=1;MEANALT=1;MQM=58;MQMR=52.7119;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.949264;PAO=0;PQA=0;PQR=0;PRO=0;QA=1911;QR=20990;RO=611;RPL=0;RPP=126.784;RPPR=1329.78;RPR=57;RUN=1;SAF=0;SAP=126.784;SAR=57;SRF=0;SRP=1329.78;SRR=611;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:187:178,9:178:6122:9:313:0,-27.7919,-501.826 0/0:180:165,15:165:5706:15:505:0,-8.42377,-426.129 0/1:224:192,32:192:6584:32:1066:-28.7895,0,-493.818 0/0:77:76,1:76:2578:1:27:0,-20.4797,-213.688 dDocent_Contig_4195 17 . C A 4325.22 . AB=0.831325;ABP=82.1513;AC=6;AF=0.75;AN=8;AO=128;CIGAR=1X;DP=142;DPB=142;DPRA=0;EPP=263.858;EPPR=33.4109;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.96875;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5096;QR=559;RO=14;RPL=0;RPP=280.959;RPPR=33.4109;RPR=128;RUN=1;SAF=126;SAP=263.858;SAR=2;SRF=14;SRP=33.4109;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:43:8,35:8:318:35:1408:-114.027,0,-16.0404 0/1:40:6,34:6:241:34:1363:-110.887,0,-10.0251 1/1:45:0,45:0:0:45:1758:-158.431,-13.5464,0 1/1:14:0,14:0:0:14:567:-51.3714,-4.21442,0 dDocent_Contig_4196 176 . A T 222.309 . AB=0.4;ABP=4.74748;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=75;DPB=75;DPRA=1.09091;EPP=20.3821;EPPR=148.499;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=322;QR=2665;RO=67;RPL=8;RPP=20.3821;RPPR=148.499;RPR=0;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=148.499;SRR=67;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:38:38,0:38:1510:0:0:0,-11.4391,-136.137 0/1:20:12,8:12:487:8:322:-23.3277,0,-38.1594 0/0:7:7,0:7:274:0:0:0,-2.10721,-25.0231 0/0:10:10,0:10:394:0:0:0,-3.0103,-35.815 dDocent_Contig_4197 9 . T G 33.1026 . AB=0.0964912;ABP=164.233;AC=1;AF=0.125;AN=8;AO=11;CIGAR=1X;DP=391;DPB=391;DPRA=1.23466;EPP=26.8965;EPPR=828.17;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.9263;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.981579;PAO=0;PQA=0;PQR=0;PRO=0;QA=423;QR=14635;RO=380;RPL=0;RPP=26.8965;RPPR=828.17;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=380;SRP=828.17;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:114:103,11:103:3966:11:423:-4.10593,0,-322.71 0/0:119:119,0:119:4573:0:0:0,-35.8226,-411.615 0/0:109:109,0:109:4200:0:0:0,-32.8123,-378.045 0/0:49:49,0:49:1896:0:0:0,-14.7505,-170.884 dDocent_Contig_4198 7 . A T 31.8987 . AB=0.111111;ABP=62.1226;AC=1;AF=0.125;AN=8;AO=13;CIGAR=1X;DP=214;DPB=214;DPRA=2.12644;EPP=31.2394;EPPR=439.476;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.791;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.985075;PAO=0;PQA=0;PQR=0;PRO=0;QA=504;QR=7684;RO=201;RPL=0;RPP=31.2394;RPPR=439.476;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=201;SRP=439.476;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:66:62,4:62:2357:4:156:0,-5.45069,-197.924 0/0:74:70,4:70:2691:4:154:0,-8.04263,-228.007 0/1:45:40,5:40:1520:5:194:-4.28649,0,-123.461 0/0:29:29,0:29:1116:0:0:0,-8.72987,-100.743 dDocent_Contig_4199 68 . A C 117.989 . AB=0.206897;ABP=24.6501;AC=2;AF=0.25;AN=8;AO=6;CIGAR=1X;DP=68;DPB=68;DPRA=0.74359;EPP=16.0391;EPPR=137.642;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=237;QR=2411;RO=62;RPL=6;RPP=16.0391;RPPR=137.642;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:14,5:14:542:5:199:-12.569,0,-43.4019 0/0:28:28,0:28:1085:0:0:0,-8.42884,-97.9323 0/1:10:9,1:9:341:1:38:-0.786969,0,-28.0289 0/0:11:11,0:11:443:0:0:0,-3.31133,-40.2259 dDocent_Contig_4200 53 . A C 12992.9 . AB=0.691489;ABP=122.765;AC=5;AF=0.625;AN=8;AO=401;CIGAR=1X;DP=524;DPB=524;DPRA=0;EPP=873.771;EPPR=270.101;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=16024;QR=4832;RO=123;RPL=401;RPP=873.771;RPPR=270.101;RPR=0;RUN=1;SAF=401;SAP=873.771;SAR=0;SRF=123;SRP=270.101;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:148:7,141:7:285:141:5661:-483.276,-18.528,0 0/1:176:61,115:61:2449:115:4567:-357.97,0,-167.577 0/1:117:35,82:35:1331:82:3266:-258.791,0,-84.8236 0/1:83:20,63:20:767:63:2530:-202.849,0,-44.3554 dDocent_Contig_4201 53 . T G 8104.43 . AB=0.48951;ABP=3.55696;AC=4;AF=0.5;AN=8;AO=280;CIGAR=1X;DP=572;DPB=572;DPRA=0;EPP=611.023;EPPR=637.08;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=10968;QR=11640;RO=292;RPL=280;RPP=611.023;RPPR=637.08;RPR=0;RUN=1;SAF=280;SAP=611.023;SAR=0;SRF=292;SRP=637.08;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:158:88,70:88:3471:70:2728:-198.092,0,-264.86 0/1:201:96,105:96:3859:105:4144:-312.435,0,-286.791 0/1:142:74,68:74:2932:68:2668:-197.514,0,-221.225 0/1:71:34,37:34:1378:37:1428:-107.392,0,-102.899 dDocent_Contig_4204 25 . C A 3243.61 . AB=0.298611;ABP=155.194;AC=4;AF=0.5;AN=8;AO=129;CIGAR=1X;DP=432;DPB=432;DPRA=0;EPP=283.13;EPPR=660.966;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5093;QR=12191;RO=303;RPL=0;RPP=283.13;RPPR=660.966;RPR=129;RUN=1;SAF=129;SAP=283.13;SAR=0;SRF=303;SRP=660.966;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:190:133,57:133:5349:57:2276:-147.806,0,-424.032 0/1:162:123,39:123:4947:39:1559:-91.7817,0,-396.337 0/1:43:30,13:30:1210:13:455:-28.3132,0,-96.2269 0/1:37:17,20:17:685:20:803:-61.45,0,-50.8405 dDocent_Contig_4205 11 . T A 4472.16 . AB=0.336016;ABP=119.095;AC=4;AF=0.5;AN=8;AO=167;CIGAR=1X;DP=497;DPB=497;DPRA=0;EPP=365.646;EPPR=719.596;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6677;QR=13220;RO=330;RPL=0;RPP=365.646;RPPR=719.596;RPR=167;RUN=1;SAF=167;SAP=365.646;SAR=0;SRF=330;SRP=719.596;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:211:134,77:134:5387:77:3060:-211.968,0,-421.143 0/1:171:126,45:126:5023:45:1830:-113.423,0,-400.476 0/1:77:47,30:47:1885:30:1210:-85.9928,0,-146.672 0/1:38:23,15:23:925:15:577:-40.8217,0,-72.1157 dDocent_Contig_4206 34 . A G 137.092 . AB=0.272727;ABP=12.8806;AC=2;AF=0.25;AN=8;AO=6;CIGAR=1X;DP=72;DPB=72;DPRA=0.44;EPP=16.0391;EPPR=146.327;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=240;QR=2580;RO=66;RPL=0;RPP=16.0391;RPPR=146.327;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=66;SRP=146.327;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:20:20,0:20:792:0:0:0,-6.0206,-71.5974 0/1:10:9,1:9:341:1:40:-0.985379,0,-28.0302 0/0:30:30,0:30:1168:0:0:0,-9.0309,-105.402 0/1:12:7,5:7:279:5:200:-14.7661,0,-21.8679 dDocent_Contig_4207 98 . N A 5075.82 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=167;CIGAR=2X;DP=167;DPB=237.5;DPRA=0;EPP=365.646;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=141;PQA=4780;PQR=0;PRO=0;QA=5635;QR=0;RO=0;RPL=167;RPP=365.646;RPPR=0;RPR=0;RUN=1;SAF=167;SAP=365.646;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:52:0,52:0:0:52:1755:-157.898,-15.6536,0 1|1:54:0,54:0:0:54:1802:-162.12,-16.2556,0 1|1:44:0,44:0:0:44:1494:-134.416,-13.2453,0 1|1:17:0,17:0:0:17:584:-52.546,-5.11751,0 dDocent_Contig_4209 23 . T C 21731.7 . AB=0.795294;ABP=646.798;AC=4;AF=0.5;AN=8;AO=676;CIGAR=1X;DP=850;DPB=850;DPRA=0;EPP=1470.93;EPPR=376.504;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=27055;QR=6786;RO=172;RPL=0;RPP=1470.93;RPPR=376.504;RPR=676;RUN=1;SAF=676;SAP=1470.93;SAR=0;SRF=172;SRP=376.504;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:296:54,242:54:2129:242:9699:-783.17,0,-102.685 0/1:327:49,278:49:1944:278:11122:-901.77,0,-76.7256 0/1:120:28,92:28:1124:92:3660:-293.299,0,-65.3188 0/1:107:41,64:41:1589:64:2574:-199.921,0,-111.375 dDocent_Contig_4210 6 . C A 781.215 . AB=0.244813;ABP=139.327;AC=2;AF=0.25;AN=8;AO=61;CIGAR=1X3M1I2M;DP=261;DPB=269.167;DPRA=0;EPP=135.47;EPPR=396.047;GTI=0;LEN=1;MEANALT=1.75;MQM=30.541;MQMR=59.9503;NS=4;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0.955801;PAO=0;PQA=0;PQR=0;PRO=0;QA=1590;QR=6989;RO=181;RPL=0;RPP=135.47;RPPR=396.047;RPR=61;RUN=1;SAF=61;SAP=135.47;SAR=0;SRF=181;SRP=396.047;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:68:43,12,13:43:1655:12,13:320,504:-28.529,-19.3533,-151.603,0,-113.818,-132.064 0|1:88:67,21,0:67:2592:21,0:602,0:-24.9941,0,-206.98,-45.1631,-213.302,-258.166 0|1:85:53,26,2:53:2050:26,2:636,78:-28.1902,0,-160.572,-37.7238,-161.987,-205.604 0|0:20:18,2,0:18:692:2,0:32,0:0,-3.54213,-60.1357,-5.41854,-60.7378,-62.4584 dDocent_Contig_4211 14 . G A 4952.4 . AB=0.04;ABP=324.649;AC=0;AF=0;AN=8;AO=7;CIGAR=3X3M;DP=402;DPB=402;DPRA=0;EPP=18.2106;EPPR=409.076;GTI=0;LEN=1;MEANALT=3;MQM=46.5714;MQMR=59.9733;NS=4;NUMALT=3;ODDS=5.55112e-17;PAIRED=1;PAIREDR=0.55615;PAO=0;PQA=0;PQR=0;PRO=0;QA=278;QR=7350;RO=187;RPL=0;RPP=18.2106;RPPR=409.076;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=187;SRP=409.076;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:101:44,6,1,50:44:1731:6,1,50:238,41,1990:-150.603,-144.341,-284.917,-160.464,-283.339,-302.545,0,-122.874,-138.997,-127.329 0|0:112:58,12,0,42:58:2271:12,0,42:469,0,1673:-120.288,-99.2776,-282.387,-137.748,-285.999,-324.471,0,-148.255,-186.727,-174.084 0|0:115:47,16,0,52:47:1844:16,0,52:641,0,2069:-156.181,-118.006,-264.827,-170.33,-269.644,-321.968,0,-99.3119,-151.637,-135.984 0|0:74:38,4,6,26:38:1504:4,6,26:160,237,1028:-73.1577,-71.4158,-193.983,-65.7808,-176.37,-187.745,0,-110.594,-104.959,-115.948 dDocent_Contig_4212 26 . A C 122.946 . AB=0.175;ABP=39.7082;AC=2;AF=0.25;AN=8;AO=8;CIGAR=1X;DP=87;DPB=87;DPRA=1.37255;EPP=20.3821;EPPR=174.557;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=326;QR=3061;RO=79;RPL=0;RPP=20.3821;RPPR=174.557;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=79;SRP=174.557;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:17:17,0:17:674:0:0:0,-5.11751,-60.9938 0/1:17:15,2:15:598:2:82:-2.66217,0,-49.0396 0/1:23:18,5:18:701:5:204:-11.8203,0,-56.496 0/0:30:29,1:29:1088:1:40:0,-5.03522,-94.2078 dDocent_Contig_4214 10 . G A 11526.4 . AB=0.788889;ABP=198.732;AC=6;AF=0.75;AN=8;AO=346;CIGAR=1X;DP=405;DPB=405;DPRA=0;EPP=754.34;EPPR=131.127;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.99711;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=13812;QR=2370;RO=59;RPL=0;RPP=754.34;RPPR=131.127;RPR=346;RUN=1;SAF=346;SAP=754.34;SAR=0;SRF=59;SRP=131.127;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:82:0,82:0:0:82:3268:-294.176,-24.6845,0 0/1:188:50,138:50:2009:138:5527:-440.646,0,-124.403 0/1:82:7,75:7:282:75:2981:-243.702,0,-1.06792 1/1:53:2,51:2:79:51:2036:-175.93,-8.45696,0 dDocent_Contig_4215 21 . G C 6131.87 . AB=0.274788;ABP=158.526;AC=6;AF=0.75;AN=8;AO=97;CIGAR=1X3M;DP=353;DPB=353;DPRA=0;EPP=213.643;EPPR=217.986;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3881;QR=3932;RO=99;RPL=0;RPP=213.643;RPPR=217.986;RPR=97;RUN=1;SAF=97;SAP=213.643;SAR=0;SRF=99;SRP=217.986;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:110:14,49,47:14:564:49,47:1935,1914:-266.4,-111.411,-143.146,-112.715,0,-145.055 0|1:113:38,52,23:38:1502:52,23:2061,886:-158.205,0,-107.951,-96.9249,-50.8851,-213.599 0|1:83:39,33,11:39:1547:33,11:1296,446:-94.8337,0,-117.398,-69.7912,-90.5503,-193.821 1|1:47:8,23,16:8:319:23,16:913,635:-98.7384,-25.9922,-45.3389,-48.8828,0,-70.3366 dDocent_Contig_4217 17 . C T 58.3147 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X3M2X2M1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=33;MQMR=0;NS=1;NUMALT=1;ODDS=4.60517;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=69;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:2:0,2:0:0:2:69:-5.82714,-0.60206,0 .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. dDocent_Contig_4218 68 . T C 275.55 . AB=0.122066;ABP=267.267;AC=3;AF=0.375;AN=8;AO=29;CIGAR=1X;DP=251;DPB=251;DPRA=0;EPP=65.983;EPPR=485.077;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.931034;PAIREDR=0.990991;PAO=0;PQA=0;PQR=0;PRO=0;QA=1163;QR=8766;RO=222;RPL=29;RPP=65.983;RPPR=485.077;RPR=0;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=222;SRP=485.077;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:97:88,9:88:3482:9:368:-4.28544,0,-284.225 0/1:85:71,14:71:2788:14:563:-25.4248,0,-225.441 0/0:38:35,3:35:1376:3:122:0,-0.066647,-112.717 0/1:31:28,3:28:1120:3:110:-0.92434,0,-91.7508 dDocent_Contig_4220 46 . G A 8205.5 . AB=0.81571;ABP=289.572;AC=4;AF=0.5;AN=8;AO=270;CIGAR=1X;DP=331;DPB=331;DPRA=0;EPP=589.308;EPPR=135.47;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=10273;QR=2361;RO=61;RPL=0;RPP=589.308;RPPR=135.47;RPR=270;RUN=1;SAF=270;SAP=589.308;SAR=0;SRF=61;SRP=135.47;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:105:25,80:25:1009:80:3027:-240.948,0,-59.4965 0/1:122:13,109:13:487:109:4169:-338.485,0,-7.43358 0/1:67:13,54:13:490:54:2051:-164.619,0,-24.2684 0/1:37:10,27:10:375:27:1026:-81.4872,0,-22.9562 dDocent_Contig_4221 10 . A T 71.206 . AB=0.235294;ABP=13.3567;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=49;DPB=49;DPRA=1.59375;EPP=3.0103;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=141;QR=1756;RO=45;RPL=0;RPP=11.6962;RPPR=100.727;RPR=4;RUN=1;SAF=2;SAP=3.0103;SAR=2;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:13,4:13:524:4:141:-7.91644,0,-42.3889 0/0:9:9,0:9:359:0:0:0,-2.70927,-32.6715 0/0:16:16,0:16:627:0:0:0,-4.81648,-56.7629 0/0:7:7,0:7:246:0:0:0,-2.10721,-22.4696 dDocent_Contig_4222 9 . T C 375.271 . AB=0.192308;ABP=88.5329;AC=1;AF=0.125;AN=8;AO=28;CIGAR=1X;DP=225;DPB=225;DPRA=0;EPP=63.8115;EPPR=430.79;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1081;QR=7467;RO=197;RPL=0;RPP=63.8115;RPPR=430.79;RPR=28;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=197;SRP=430.79;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:104:84,20:84:3169:20:770:-38.3204,0,-254.064 0/0:37:34,3:34:1291:3:117:0,-0.227729,-105.569 0/0:51:48,3:48:1842:3:116:0,-4.53482,-155.209 0/0:33:31,2:31:1165:2:78:0,-2.53052,-97.741 dDocent_Contig_4223 52 . G A 777.655 . AB=0.238095;ABP=90.593;AC=3;AF=0.375;AN=8;AO=35;CIGAR=1X;DP=193;DPB=193;DPRA=1.06522;EPP=79.0118;EPPR=346.103;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1384;QR=6274;RO=158;RPL=35;RPP=79.0118;RPPR=346.103;RPR=0;RUN=1;SAF=35;SAP=79.0118;SAR=0;SRF=158;SRP=346.103;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:84:70,14:70:2759:14:545:-24.098,0,-223.149 0/1:47:31,16:31:1208:16:638:-43.6052,0,-94.8479 0/0:46:46,0:46:1860:0:0:0,-13.8474,-167.601 0/1:16:11,5:11:447:5:201:-13.654,0,-35.7694 dDocent_Contig_4224 8 . T A 33.9934 . AB=0.136364;ABP=28.2783;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=130;DPB=130;DPRA=0.611111;EPP=9.52472;EPPR=278.787;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.944882;PAO=0;PQA=0;PQR=0;PRO=0;QA=116;QR=4823;RO=127;RPL=0;RPP=9.52472;RPPR=278.787;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=127;SRP=278.787;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:19,3:19:734:3:116:-4.19504,0,-59.7682 0/0:34:34,0:34:1302:0:0:0,-10.235,-117.466 0/0:42:42,0:42:1596:0:0:0,-12.6433,-143.903 0/0:32:32,0:32:1191:0:0:0,-9.63296,-107.483 dDocent_Contig_4225 28 . G C 6314.26 . AB=0.450207;ABP=13.3901;AC=4;AF=0.5;AN=8;AO=217;CIGAR=1X;DP=482;DPB=482;DPRA=0;EPP=474.22;EPPR=578.45;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.995392;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=8676;QR=10546;RO=265;RPL=0;RPP=474.22;RPPR=578.45;RPR=217;RUN=1;SAF=217;SAP=474.22;SAR=0;SRF=265;SRP=578.45;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:167:99,68:99:3923:68:2722:-194.819,0,-302.785 0/1:167:80,87:80:3159:87:3481:-263.047,0,-234.118 0/1:109:58,51:58:2333:51:2039:-150.878,0,-177.312 0/1:39:28,11:28:1131:11:434:-27.6715,0,-90.3313 dDocent_Contig_4226 17 . C G 11044.5 . AB=0.493781;ABP=3.28038;AC=4;AF=0.5;AN=8;AO=397;CIGAR=1X1M1X;DP=804;DPB=804;DPRA=0;EPP=865.085;EPPR=641.423;GTI=0;LEN=1;MEANALT=3.25;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=14647;QR=11463;RO=294;RPL=0;RPP=865.085;RPPR=641.423;RPR=397;RUN=1;SAF=397;SAP=865.085;SAR=0;SRF=294;SRP=641.423;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:237:94,119,24:94:3712:119,24:4376,861:-329.521,0,-269.713,-307.964,-255.69,-606.183 0|1:204:80,97,25:80:3057:97,25:3582,908:-268.939,0,-221.646,-236.556,-194.386,-479.81 0|1:216:74,102,37:74:2885:102,37:3734,1374:-282.846,0,-206.435,-201.278,-133.304,-427.261 0|1:147:46,79,21:46:1809:79,21:2955,828:-228.13,0,-125.027,-176.162,-82.9977,-318.641 dDocent_Contig_4228 13 . C T 2696.2 . AB=0;ABP=0;AC=0;AF=0;AN=8;AO=3;CIGAR=1X3M1X;DP=122;DPB=122;DPRA=0;EPP=9.52472;EPPR=76.8404;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=117;QR=1304;RO=34;RPL=0;RPP=9.52472;RPPR=76.8404;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:41:0,3,38:0:0:3,38:117,1490:-133.75,-124.133,-123.23,-11.4391,-1.43294,0 0|0:46:21,0,25:21:806:0,25:0,946:-71.5337,-77.8553,-144.012,0,-66.5377,-59.0119 0|0:18:6,0,12:6:226:0,12:0,478:-37.9518,-39.7579,-58.2689,0,-18.8945,-15.2822 0|0:17:7,0,10:7:272:0,10:0,386:-29.977,-32.0842,-54.4353,0,-22.7383,-19.728 dDocent_Contig_4229 152 . G A 14278.2 . AB=0.75;ABP=29.068;AC=7;AF=0.875;AN=8;AO=443;CIGAR=1X;DP=473;DPB=473;DPRA=0;EPP=964.973;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=16745;QR=1167;RO=30;RPL=0;RPP=964.973;RPPR=68.1545;RPR=443;RUN=1;SAF=0;SAP=964.973;SAR=443;SRF=0;SRP=68.1545;SRR=30;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:157:11,146:11:429:146:5490:-455.113,-8.29607,0 1/1:102:1,101:1:39:101:3839:-341.716,-26.8085,0 1/1:166:6,160:6:234:160:6101:-527.602,-28.5399,0 0/1:48:12,36:12:465:36:1315:-104.181,0,-27.7522 dDocent_Contig_4230 98 . N T 100.773 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.29832;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=108;QR=0;RO=0;RPL=3;RPP=9.52472;RPPR=0;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:108:-10.0751,-0.90309,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_4231 11 . G A 9164.82 . AB=0.524221;ABP=5.95569;AC=4;AF=0.5;AN=8;AO=303;CIGAR=1X;DP=578;DPB=578;DPRA=0;EPP=660.966;EPPR=597.994;GTI=0;LEN=1;MEANALT=1.25;MQM=59.9505;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=12170;QR=10909;RO=274;RPL=0;RPP=660.966;RPPR=597.994;RPR=303;RUN=1;SAF=303;SAP=660.966;SAR=0;SRF=274;SRP=597.994;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:184:104,80:104:4158:80:3217:-234.195,0,-318.797 0/1:192:74,118:74:2964:118:4751:-369.648,0,-209.04 0/1:134:70,64:70:2750:64:2556:-189.833,0,-207.286 0/1:68:26,41:26:1037:41:1646:-127.795,0,-73.0518 dDocent_Contig_4232 107 . N C 106.559 . AB=0;ABP=0;AC=4;AF=0.666667;AN=6;AO=3;CIGAR=1X;DP=4;DPB=4;DPRA=1.5;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=104;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:1:0,0:0:0:0:0:0,0,0 1/1:1:0,1:0:0:1:34:-3.39891,-0.30103,0 ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:70:-6.6474,-0.60206,0 dDocent_Contig_4233 18 . T A 4214.1 . AB=0.185249;ABP=1006.35;AC=4;AF=0.5;AN=8;AO=216;CIGAR=1X;DP=1166;DPB=1166;DPRA=0;EPP=429.624;EPPR=2065.91;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.953704;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=8630;QR=38022;RO=950;RPL=0;RPP=472.048;RPPR=2065.91;RPR=216;RUN=1;SAF=211;SAP=429.624;SAR=5;SRF=950;SRP=2065.91;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:344:264,80:264:10577:80:3208:-185.231,0,-847.648 0/1:302:254,48:254:10134:48:1901:-80.379,0,-820.471 0/1:241:194,47:194:7757:47:1876:-96.4976,0,-625.141 0/1:279:238,41:238:9554:41:1645:-64.2919,0,-775.247 dDocent_Contig_4234 32 . A T 274.366 . AB=0.161905;ABP=107.262;AC=4;AF=0.5;AN=8;AO=17;CIGAR=1X;DP=105;DPB=105;DPRA=0;EPP=39.9253;EPPR=194.1;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=684;QR=3507;RO=88;RPL=0;RPP=39.9253;RPPR=194.1;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=88;SRP=194.1;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:45:36,9:36:1438:9:360:-19.2171,0,-116.128 0/1:23:19,4:19:758:4:161:-7.95121,0,-61.6178 0/1:25:22,3:22:873:3:122:-3.84674,0,-71.3476 0/1:12:11,1:11:438:1:41:-0.482207,0,-36.1617 dDocent_Contig_4235 106 . N C 91.2038 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=3;CIGAR=2X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=91;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. 1|1:2:0,2:0:0:2:57:-5.41388,-0.60206,0 1|1:1:0,1:0:0:1:34:-3.39891,-0.30103,0 .:.:.:.:.:.:.:. dDocent_Contig_4236 7 . T A 5922.92 . AB=0.753846;ABP=148.532;AC=4;AF=0.5;AN=8;AO=196;CIGAR=1X;DP=260;DPB=260;DPRA=0;EPP=428.619;EPPR=139.813;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7493;QR=2401;RO=63;RPL=0;RPP=428.619;RPPR=139.813;RPR=196;RUN=1;SAF=196;SAP=428.619;SAR=0;SRF=63;SRP=139.813;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:102:18,84:18:693:84:3221:-259.332,0,-31.9987 0/1:75:16,58:16:595:58:2213:-177.009,0,-31.4935 0/1:52:23,29:23:886:29:1114:-84.9098,0,-64.4068 0/1:31:6,25:6:227:25:945:-76.0311,0,-11.46 dDocent_Contig_4237 108 . T C 38.8284 . AB=0.1875;ABP=16.582;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=73;DPB=73;DPRA=0.842105;EPP=9.52472;EPPR=155.013;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=8.67362e-19;PAIRED=0;PAIREDR=0.757143;PAO=0;PQA=0;PQR=0;PRO=0;QA=105;QR=2340;RO=70;RPL=0;RPP=9.52472;RPPR=155.013;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=155.013;SRR=70;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:25:25,0:25:819:0:0:0,-7.52575,-74.0116 0/0:23:23,0:23:775:0:0:0,-6.92369,-70.0639 0/1:16:13,3:13:435:3:105:-4.97968,0,-34.6559 0/0:9:9,0:9:311:0:0:0,-2.70927,-28.3252 dDocent_Contig_4238 48 . T A 66.5123 . AB=0.107143;ABP=115.617;AC=1;AF=0.125;AN=8;AO=13;CIGAR=1X;DP=306;DPB=306;DPRA=1.08163;EPP=31.2394;EPPR=639.252;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=526;QR=11679;RO=293;RPL=0;RPP=31.2394;RPPR=639.252;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=293;SRP=639.252;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:114:114,0:114:4545:0:0:0,-34.3174,-408.973 0/0:75:71,4:71:2809:4:163:0,-7.51882,-237.85 0/1:84:75,9:75:2997:9:363:-7.74814,0,-244.526 0/0:33:33,0:33:1328:0:0:0,-9.93399,-119.78 dDocent_Contig_4239 135 . C T 69.7326 . AB=0.181818;ABP=22.3561;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=103;DPB=103;DPRA=0.570175;EPP=18.2106;EPPR=211.472;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=271;QR=3790;RO=96;RPL=0;RPP=18.2106;RPPR=211.472;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=211.472;SRR=96;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:38:38,0:38:1503:0:0:0,-11.4391,-135.511 0/1:22:18,4:18:709:4:159:-8.06929,0,-57.506 0/0:27:25,2:25:1007:2:72:0,-1.29349,-84.0893 0/0:16:15,1:15:571:1:40:0,-0.820801,-47.7184 dDocent_Contig_4240 84 . C G 351.827 . AB=0.355556;ABP=11.1654;AC=1;AF=0.125;AN=8;AO=16;CIGAR=1X;DP=132;DPB=132;DPRA=1.55172;EPP=37.7539;EPPR=254.901;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=550;QR=4008;RO=116;RPL=16;RPP=37.7539;RPPR=254.901;RPR=0;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=116;SRP=254.901;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:36:36,0:36:1244:0:0:0,-10.8371,-112.264 0/1:45:29,16:29:1000:16:550:-36.2796,0,-76.7654 0/0:36:36,0:36:1245:0:0:0,-10.8371,-112.354 0/0:15:15,0:15:519:0:0:0,-4.51545,-47.0383 dDocent_Contig_4241 8 . A T 4565.99 . AB=0.346228;ABP=109.194;AC=4;AF=0.5;AN=8;AO=179;CIGAR=2X;DP=517;DPB=517;DPRA=0;EPP=391.704;EPPR=726.111;GTI=0;LEN=1;MEANALT=2.25;MQM=60;MQMR=59.8679;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.981982;PAO=0;PQA=0;PQR=0;PRO=0;QA=6847;QR=12780;RO=333;RPL=0;RPP=391.704;RPPR=726.111;RPR=179;RUN=1;SAF=179;SAP=391.704;SAR=0;SRF=333;SRP=726.111;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:132:90,41:90:3461:41:1553:-100.219,0,-271.798 0|1:141:90,50:90:3472:50:1929:-131.318,0,-269.946 0|1:146:92,52:92:3512:52:1996:-136.147,0,-272.162 0|1:98:61,36:61:2335:36:1369:-93.9046,0,-180.775 dDocent_Contig_4242 69 . T G 60.8691 . AB=0.230769;ABP=11.1951;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=91;DPB=91;DPRA=1.04545;EPP=16.0391;EPPR=187.585;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=211;QR=3322;RO=85;RPL=6;RPP=16.0391;RPPR=187.585;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=85;SRP=187.585;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:30:29,1:29:1154:1:13:0,-7.73091,-102.84 0/0:26:24,2:24:879:2:79:0,-0.329535,-71.9033 0/0:22:22,0:22:885:0:0:0,-6.62266,-79.9582 0/1:13:10,3:10:404:3:119:-7.18179,0,-32.8072 dDocent_Contig_4243 16 . T G 788.483 . AB=0.321739;ABP=34.7516;AC=4;AF=0.5;AN=8;AO=37;CIGAR=1X2M1X;DP=115;DPB=115;DPRA=0;EPP=83.3548;EPPR=172.385;GTI=0;LEN=1;MEANALT=1;MQM=45.027;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.540541;PAIREDR=0.961538;PAO=0;PQA=0;PQR=0;PRO=0;QA=1478;QR=3077;RO=78;RPL=0;RPP=83.3548;RPPR=172.385;RPR=37;RUN=1;SAF=37;SAP=83.3548;SAR=0;SRF=78;SRP=172.385;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:25:14,11:14:557:11:429:-28.2387,0,-42.9496 0|1:44:36,8:36:1430:8:322:-10.4738,0,-115.718 0|1:26:15,11:15:593:11:447:-29.0171,0,-45.8841 0|1:20:13,7:13:497:7:280:-16.1083,0,-39.0534 dDocent_Contig_4244 1 . N G 170.123 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=8;CIGAR=1X;DP=8;DPB=8;DPRA=0;EPP=20.3821;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=21.625;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=323;QR=0;RO=0;RPL=0;RPP=20.3821;RPPR=0;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:121:-5.86594,-0.90309,0 1/1:2:0,2:0:0:2:82:-4.16974,-0.60206,0 1/1:2:0,2:0:0:2:79:-3.97784,-0.60206,0 1/1:1:0,1:0:0:1:41:-2.39145,-0.30103,0 dDocent_Contig_4248 52 . A T 263.734 . AB=0.163265;ABP=99.53;AC=2;AF=0.25;AN=8;AO=17;CIGAR=1X;DP=169;DPB=169;DPRA=1.37374;EPP=39.9253;EPPR=333.074;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=678;QR=6021;RO=152;RPL=17;RPP=39.9253;RPPR=333.074;RPR=0;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=152;SRP=333.074;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:79:66,13:66:2610:13:514:-22.822,0,-211.255 0/0:33:33,0:33:1323:0:0:0,-9.93399,-119.335 0/0:38:37,1:37:1458:1:41:0,-7.34457,-127.384 0/1:19:16,3:16:630:3:123:-5.74522,0,-51.3129 dDocent_Contig_4249 11 . C A 276.597 . AB=0.157895;ABP=118.898;AC=2;AF=0.25;AN=8;AO=28;CIGAR=1X;DP=426;DPB=426;DPRA=0;EPP=63.8115;EPPR=867.256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1105;QR=15887;RO=398;RPL=0;RPP=63.8115;RPPR=867.256;RPR=28;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=398;SRP=867.256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:140:135,5:135:5377:5:198:0,-23.9484,-465.571 0/0:172:167,5:167:6657:5:202:0,-33.2151,-580.276 0/1:75:68,7:68:2735:7:280:-2.99431,0,-223.684 0/1:39:28,11:28:1118:11:425:-26.8565,0,-89.1601 dDocent_Contig_4250 9 . T C 73.8998 . AB=0.136364;ABP=53.5464;AC=1;AF=0.125;AN=8;AO=10;CIGAR=1X;DP=178;DPB=178;DPRA=1.8642;EPP=24.725;EPPR=367.818;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=0.6;PAIREDR=0.994048;PAO=0;PQA=0;PQR=0;PRO=0;QA=383;QR=6437;RO=168;RPL=0;RPP=24.725;RPPR=367.818;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=168;SRP=367.818;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:44:38,6:38:1460:6:234:-8.18578,0,-118.433 0/0:27:27,0:27:1033:0:0:0,-8.12781,-93.2758 0/0:67:66,1:66:2521:1:39:0,-16.2724,-223.193 0/0:40:37,3:37:1423:3:110:0,-1.78159,-118.089 dDocent_Contig_4251 133 . A G 106.035 . AB=0.166667;ABP=55.1256;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X;DP=159;DPB=159;DPRA=1.54286;EPP=22.5536;EPPR=328.731;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=307;QR=5051;RO=150;RPL=0;RPP=22.5536;RPPR=328.731;RPR=9;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=328.731;SRR=150;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:71:71,0:71:2391:0:0:0,-21.3731,-215.444 0/1:54:45,9:45:1468:9:307:-11.7004,0,-116.142 0/0:21:21,0:21:740:0:0:0,-6.32163,-66.9219 0/0:13:13,0:13:452:0:0:0,-3.91339,-41.0105 dDocent_Contig_4252 14 . C T 4060.77 . AB=0.374046;ABP=57.1645;AC=4;AF=0.5;AN=8;AO=147;CIGAR=1X;DP=393;DPB=393;DPRA=0;EPP=322.217;EPPR=537.193;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5871;QR=9845;RO=246;RPL=0;RPP=322.217;RPPR=537.193;RPR=147;RUN=1;SAF=147;SAP=322.217;SAR=0;SRF=246;SRP=537.193;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:104:53,51:53:2142:51:2060:-154.274,0,-161.643 0/1:130:103,27:103:4151:27:1078:-58.173,0,-334.413 0/1:98:58,40:58:2319:40:1606:-115.27,0,-179.367 0/1:61:32,29:32:1233:29:1127:-83.3495,0,-92.8734 dDocent_Contig_4253 43 . T G 332.249 . AB=0.291667;ABP=21.1059;AC=2;AF=0.25;AN=8;AO=14;CIGAR=1X;DP=122;DPB=122;DPRA=0.648649;EPP=33.4109;EPPR=237.529;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=546;QR=4345;RO=108;RPL=0;RPP=33.4109;RPPR=237.529;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=108;SRP=237.529;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:49:49,0:49:1972:0:0:0,-14.7505,-177.665 0/0:25:25,0:25:1015:0:0:0,-7.52575,-91.6402 0/1:30:24,6:24:952:6:245:-13.3986,0,-76.9454 0/1:18:10,8:10:406:8:301:-22.0201,0,-31.4815 dDocent_Contig_4254 20 . A T 617.68 . AB=0.396552;ABP=8.40154;AC=1;AF=0.125;AN=8;AO=23;CIGAR=1X2M1X;DP=128;DPB=128;DPRA=2.48571;EPP=52.9542;EPPR=228.843;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=889;QR=4095;RO=104;RPL=0;RPP=52.9542;RPPR=228.843;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=104;SRP=228.843;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:35:34,0:34:1331:0:0:0,-10.235,-119.658 0|1:58:35,23:35:1402:23:889:-62.8649,0,-108.98 0|0:14:14,0:14:552:0:0:0,-4.21442,-50.0236 0|0:21:21,0:21:810:0:0:0,-6.32163,-73.2114 dDocent_Contig_4255 29 . T A 462.163 . AB=0.279412;ABP=31.7504;AC=2;AF=0.25;AN=8;AO=20;CIGAR=1X;DP=151;DPB=151;DPRA=0.565476;EPP=46.4397;EPPR=287.473;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=797;QR=5214;RO=131;RPL=0;RPP=46.4397;RPPR=287.473;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=131;SRP=287.473;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:59:41,18:41:1642:18:715:-46.9177,0,-130.247 0/0:56:56,0:56:2218:0:0:0,-16.8577,-199.796 0/0:27:26,1:26:1038:1:41:0,-4.03324,-89.6211 0/1:9:8,1:8:316:1:41:-1.3853,0,-26.0962 dDocent_Contig_4257 11 . A T 696.871 . AB=0.150171;ABP=314.465;AC=3;AF=0.375;AN=8;AO=46;CIGAR=1X;DP=339;DPB=339;DPRA=0;EPP=102.898;EPPR=639.252;GTI=0;LEN=1;MEANALT=1;MQM=56.6304;MQMR=59.9863;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1868;QR=11697;RO=293;RPL=0;RPP=102.898;RPPR=639.252;RPR=46;RUN=1;SAF=46;SAP=102.898;SAR=0;SRF=293;SRP=639.252;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:117:100,17:100:3995:17:685:-26.6238,0,-324.308 0/1:84:75,9:75:3021:9:368:-8.14847,0,-246.678 0/1:92:74,18:74:2946:18:733:-38.5066,0,-237.542 0/0:46:44,2:44:1735:2:82:0,-6.08959,-148.611 dDocent_Contig_4258 155 . C T 162.51 . AB=0.380952;ABP=5.59539;AC=1;AF=0.125;AN=8;AO=16;CIGAR=1X;DP=202;DPB=202;DPRA=0.937107;EPP=37.7539;EPPR=406.904;GTI=0;LEN=1;MEANALT=1;MQM=40;MQMR=46.9624;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=537;QR=6167;RO=186;RPL=0;RPP=37.7539;RPPR=406.904;RPR=16;RUN=1;SAF=0;SAP=37.7539;SAR=16;SRF=0;SRP=406.904;SRR=186;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:13,8:13:423:8:263:-17.0469,0,-31.8363 0/0:50:46,4:46:1549:4:136:0,-2.8383,-126.586 0/0:78:74,4:74:2470:4:138:0,-11.1194,-208.797 0/0:53:53,0:53:1725:0:0:0,-15.9546,-154.551 dDocent_Contig_4260 207 . T C 1533.11 . AB=0.744681;ABP=27.4509;AC=6;AF=0.75;AN=8;AO=56;CIGAR=1X;DP=68;DPB=68;DPRA=0;EPP=33.4109;EPPR=29.068;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1871;QR=412;RO=12;RPL=42;RPP=33.4109;RPPR=29.068;RPR=14;RUN=1;SAF=0;SAP=124.613;SAR=56;SRF=0;SRP=29.068;SRR=12;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:6,12:6:215:12:417:-32.4352,0,-14.2806 1/1:4:0,4:0:0:4:126:-11.6526,-1.20412,0 1/1:17:0,17:0:0:17:552:-49.9922,-5.11751,0 0/1:29:6,23:6:197:23:776:-61.4249,0,-9.32177 dDocent_Contig_4261 22 . A G 25244 . AB=0.488425;ABP=5.07142;AC=4;AF=0.5;AN=8;AO=865;CIGAR=1X;DP=1771;DPB=1771;DPRA=0;EPP=1881.33;EPPR=1970.36;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.998844;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=34048;QR=36049;RO=906;RPL=0;RPP=1881.33;RPPR=1970.36;RPR=865;RUN=1;SAF=865;SAP=1881.33;SAR=0;SRF=906;SRP=1970.36;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:528:327,201:327:12999:201:7945:-555.707,0,-1010.05 0/1:461:213,248:213:8517:248:9778:-740.666,0,-627.275 0/1:497:223,274:223:8826:274:10708:-813.454,0,-644.236 0/1:285:143,142:143:5707:142:5617:-419.565,0,-427.656 dDocent_Contig_4262 94 . T G 4642.74 . AB=0.761194;ABP=82.4149;AC=5;AF=0.625;AN=8;AO=166;CIGAR=1X;DP=198;DPB=198;DPRA=0;EPP=363.475;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5633;QR=1111;RO=32;RPL=166;RPP=363.475;RPPR=72.4974;RPR=0;RUN=1;SAF=166;SAP=363.475;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:64:0,64:0:0:64:2151:-193.859,-19.2659,0 0/1:27:3,24:3:105:24:812:-65.2636,0,-1.66835 0/1:75:20,55:20:693:55:1885:-147.355,0,-40.116 0/1:32:9,23:9:313:23:785:-61.333,0,-18.8741 dDocent_Contig_4263 45 . C T 301.776 . AB=0.295455;ABP=19.0002;AC=3;AF=0.375;AN=8;AO=13;CIGAR=1X;DP=61;DPB=61;DPRA=0.862745;EPP=31.2394;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=0.846154;PAIREDR=0.9375;PAO=0;PQA=0;PQR=0;PRO=0;QA=510;QR=1944;RO=48;RPL=0;RPP=31.2394;RPPR=107.241;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:17:17,0:17:693:0:0:0,-5.11751,-62.698 0/1:22:14,8:14:559:8:321:-22.635,0,-44.0276 0/1:13:10,3:10:405:3:107:-6.06401,0,-32.8967 0/1:9:7,2:7:287:2:82:-5.07041,0,-23.496 dDocent_Contig_4264 124 . T A 97.0577 . AB=0.666667;ABP=4.45795;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=40;DPB=40;DPRA=0.529412;EPP=11.6962;EPPR=32.2045;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.694444;PAO=0;PQA=0;PQR=0;PRO=0;QA=136;QR=1229;RO=36;RPL=0;RPP=11.6962;RPPR=81.1833;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=7;SRP=32.2045;SRR=29;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:9:9,0:9:310:0:0:0,-2.70927,-28.2337 0/0:12:12,0:12:435:0:0:0,-3.61236,-39.4853 0/0:13:13,0:13:445:0:0:0,-3.91339,-40.3714 0/1:6:2,4:2:39:4:136:-10.7696,0,-1.89817 dDocent_Contig_4265 12 . T C 14557.9 . AB=0.739348;ABP=201.55;AC=5;AF=0.625;AN=8;AO=451;CIGAR=1X;DP=567;DPB=567;DPRA=0;EPP=982.344;EPPR=254.901;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.993348;PAIREDR=0.974138;PAO=0;PQA=0;PQR=0;PRO=0;QA=18044;QR=4645;RO=116;RPL=0;RPP=982.344;RPPR=254.901;RPR=451;RUN=1;SAF=451;SAP=982.344;SAR=0;SRF=116;SRP=254.901;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:168:12,156:12:487:156:6221:-515.463,-6.39137,0 0/1:190:65,125:65:2584:125:5020:-394.477,0,-175.502 0/1:126:20,106:20:807:106:4254:-344.879,0,-35.014 0/1:83:19,64:19:767:64:2549:-204.564,0,-44.365 dDocent_Contig_4266 14 . C T 95.4256 . AB=0.109244;ABP=160.834;AC=2;AF=0.25;AN=8;AO=13;CIGAR=1X;DP=203;DPB=203;DPRA=1.41667;EPP=31.2394;EPPR=415.59;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=520;QR=7582;RO=190;RPL=0;RPP=31.2394;RPPR=415.59;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=190;SRP=415.59;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:77:68,9:68:2703:9:357:-9.3109,0,-220.205 0/0:53:53,0:53:2135:0:0:0,-15.9546,-192.32 0/1:42:38,4:38:1504:4:163:-2.41517,0,-122.953 0/0:31:31,0:31:1240:0:0:0,-9.33193,-111.864 dDocent_Contig_4267 20 . T C 22338.5 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=664;CIGAR=1X;DP=699;DPB=699;DPRA=0;EPP=1444.87;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=26169;QR=1328;RO=33;RPL=0;RPP=1444.87;RPPR=74.6689;RPR=664;RUN=1;SAF=664;SAP=1444.87;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:228:13,213:13:520:213:8348:-703.782,-21.0606,0 1/1:156:7,149:7:279:149:5909:-506.143,-21.4819,0 1/1:196:8,188:8:324:188:7423:-638.195,-29.4731,0 1/1:119:5,114:5:205:114:4489:-385.127,-16.9876,0 dDocent_Contig_4268 30 . C T 57.2464 . AB=0.16;ABP=28.1125;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=99;DPB=99;DPRA=1.01351;EPP=11.6962;EPPR=168.156;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.842105;PAO=0;PQA=0;PQR=0;PRO=0;QA=152;QR=3809;RO=95;RPL=0;RPP=11.6962;RPPR=131.584;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=90;SRP=168.156;SRR=5;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:21,4:21:846:4:152:-6.52052,0,-68.9275 0/0:23:23,0:23:926:0:0:0,-6.92369,-83.6432 0/0:31:31,0:31:1241:0:0:0,-9.33193,-111.962 0/0:20:20,0:20:796:0:0:0,-6.0206,-71.9546 dDocent_Contig_4269 27 . G C 762.448 . AB=0.16609;ABP=282.89;AC=3;AF=0.375;AN=8;AO=59;CIGAR=1X;DP=433;DPB=433;DPRA=0;EPP=131.127;EPPR=812.97;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2259;QR=14682;RO=373;RPL=0;RPP=131.127;RPPR=812.97;RPR=59;RUN=1;SAF=59;SAP=131.127;SAR=0;SRF=373;SRP=812.97;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:151:131,20:131:5151:20:779:-24.9685,0,-418.028 0/0:144:132,11:132:5166:11:416:0,-5.66974,-427.053 0/1:74:54,20:54:2141:20:776:-47.8764,0,-170.603 0/1:64:56,8:56:2224:8:288:-6.99159,0,-181.065 dDocent_Contig_4270 15 . C A 1862.68 . AB=0.157738;ABP=344.888;AC=3;AF=0.375;AN=8;AO=53;CIGAR=5M2I2M1X3M2X3M;DP=336;DPB=360.438;DPRA=0;EPP=118.098;EPPR=380.846;GTI=0;LEN=1;MEANALT=5;MQM=36.566;MQMR=60;NS=4;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1868;QR=6810;RO=174;RPL=0;RPP=118.098;RPPR=380.846;RPR=53;RUN=1;SAF=53;SAP=118.098;SAR=0;SRF=174;SRP=380.846;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:72:13,28,20,1,4:13:510:28,20,1,4:1101,758,38,98:-106.878,-20.2069,-53.732,-48.6393,0,-84.5668,-107.864,-59.2332,-87.6599,-149.508,-103.952,-55.3247,-83.7498,-142.968,-144.691 0|1:59:40,0,4,3,10:40:1573:0,4,3,10:0,152,120,276:-7.69647,-19.7377,-149.186,-7.25262,-136.719,-135.515,-10.6418,-140.101,-127.634,-139.198,0,-129.411,-116.946,-120.328,-126.4 0|1:59:35,0,5,6,12:35:1362:0,5,6,12:0,191,237,440:-22.5131,-33.0492,-144.997,-17.3711,-129.325,-127.82,-15.0409,-126.993,-111.321,-125.187,0,-111.939,-96.2678,-93.9365,-108.327 0|1:146:86,0,16,10,27:86:3365:0,16,10,27:0,580,398,1054:-54.17,-80.0585,-356.745,-32.7135,-309.4,-304.584,-49.873,-326.56,-279.216,-323.55,0,-276.686,-229.343,-246.502,-268.558 dDocent_Contig_4271 11 . G A 5207.68 . AB=0.662698;ABP=60.9507;AC=4;AF=0.5;AN=8;AO=167;CIGAR=1X;DP=252;DPB=252;DPRA=0;EPP=365.646;EPPR=187.585;GTI=0;LEN=1;MEANALT=1;MQM=59.9581;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6675;QR=3380;RO=85;RPL=0;RPP=365.646;RPPR=187.585;RPR=167;RUN=1;SAF=167;SAP=365.646;SAR=0;SRF=85;SRP=187.585;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:79:16,63:16:618:63:2491:-200.54,0,-32.1636 0/1:51:16,35:16:638:35:1413:-112.065,0,-42.3997 0/1:94:37,57:37:1492:57:2296:-178.483,0,-106.226 0/1:28:16,12:16:632:12:475:-34.6696,0,-48.7858 dDocent_Contig_4273 56 . T C 56.2999 . AB=0.0961538;ABP=150.336;AC=1;AF=0.125;AN=8;AO=21;CIGAR=6M1X1M;DP=456;DPB=454.75;DPRA=0;EPP=48.6112;EPPR=915.029;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=842;QR=16280;RO=420;RPL=21;RPP=48.6112;RPPR=915.029;RPR=0;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=420;SRP=915.029;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:124:119,0,4:119:4545:0,4:0,163:0,-35.8226,-408.733,-22.1137,-395.285,-394.081 0|0:154:147,0,4:147:5754:0,4:0,160:0,-44.2514,-517.379,-31.0333,-504.199,-502.995 0|1:104:86,7,10:86:3351:7,10:263,396:-6.7269,-11.0714,-284.397,0,-253.913,-272.446 0|0:74:68,3,3:68:2630:3,3:101,123:0,-12.3233,-227.408,-10.2813,-218.158,-225.436 dDocent_Contig_4274 10 . C A 4688.52 . AB=0.632911;ABP=39.3756;AC=4;AF=0.5;AN=8;AO=150;CIGAR=1X;DP=237;DPB=237;DPRA=0;EPP=328.731;EPPR=191.928;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.931034;PAO=0;PQA=0;PQR=0;PRO=0;QA=6047;QR=3507;RO=87;RPL=0;RPP=328.731;RPPR=191.928;RPR=150;RUN=1;SAF=150;SAP=328.731;SAR=0;SRF=87;SRP=191.928;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:49:17,32:17:678:32:1277:-100.449,0,-46.5962 0/1:68:19,49:19:768:49:1982:-158.098,0,-48.9702 0/1:64:21,43:21:848:43:1731:-136.736,0,-57.3661 0/1:56:30,26:30:1213:26:1057:-78.5597,0,-92.5852 dDocent_Contig_4276 1 . N G 75.0195 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=4.60517;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=79;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:79:-7.49763,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_4277 213 . A C 160.231 . AB=0.290323;ABP=14.8483;AC=3;AF=0.375;AN=8;AO=9;CIGAR=1M2X1M1D4M2X2M2I4M;DP=44;DPB=48.6471;DPRA=0;EPP=22.5536;EPPR=49.8093;GTI=0;LEN=1;MEANALT=1.66667;MQM=41;MQMR=59.3793;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.931034;PAO=17.3333;PQA=653.333;PQR=1030.33;PRO=26.3333;QA=335;QR=1141;RO=29;RPL=9;RPP=22.5536;RPPR=49.8093;RPR=0;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=65.983;SRR=29;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:13:9,2,0:9:356:2,0:79,0:-3.36308,0,-28.6668,-6.07235,-29.2689,-35.3519 0|1:10:6,1,2:6:232:1,2:38,71:-3.68127,-2.554,-21.0852,0,-15.836,-18.1844 0|1:13:10,0,3:10:397:0,3:0,114:-5.86307,-8.87337,-41.5585,0,-32.6822,-31.7791 0|1:8:4,0,4:4:156:0,4:0,150:-10.5064,-11.7105,-24.5443,0,-12.8373,-11.6331 dDocent_Contig_4278 9 . C T 2081.2 . AB=0.188834;ABP=515.182;AC=4;AF=0.5;AN=8;AO=115;CIGAR=1X;DP=609;DPB=609;DPRA=0;EPP=252.73;EPPR=1073.55;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=2.77556e-17;PAIRED=1;PAIREDR=0.983773;PAO=0;PQA=0;PQR=0;PRO=0;QA=4419;QR=18886;RO=493;RPL=0;RPP=252.73;RPPR=1073.55;RPR=115;RUN=1;SAF=115;SAP=252.73;SAR=0;SRF=493;SRP=1073.55;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:207:177,30:177:6779:30:1165:-42.8349,0,-547.689 0/1:212:150,61:150:5710:61:2331:-146.108,0,-449.967 0/1:78:65,13:65:2502:13:496:-21.5059,0,-201.899 0/1:112:101,11:101:3895:11:427:-5.06962,0,-316.93 dDocent_Contig_4279 10 . C A 1975.98 . AB=0.469388;ABP=4.20683;AC=4;AF=0.5;AN=8;AO=69;CIGAR=1X;DP=147;DPB=147;DPRA=0;EPP=152.842;EPPR=170.214;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2756;QR=3053;RO=77;RPL=0;RPP=152.842;RPPR=170.214;RPR=69;RUN=1;SAF=69;SAP=152.842;SAR=0;SRF=77;SRP=170.214;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:81:49,32:49:1933:32:1276:-90.7225,0,-149.779 0/1:37:16,20:16:643:20:794:-60.5308,0,-46.9561 0/1:18:8,10:8:316:10:404:-31.3017,0,-23.3851 0/1:11:4,7:4:161:7:282:-22.4413,0,-11.5639 dDocent_Contig_4280 82 . A T 740.428 . AB=0.380952;ABP=13.3506;AC=2;AF=0.25;AN=8;AO=33;CIGAR=1X;DP=171;DPB=171;DPRA=0.829932;EPP=74.6689;EPPR=302.673;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1170;QR=4844;RO=138;RPL=33;RPP=74.6689;RPPR=302.673;RPR=0;RUN=1;SAF=33;SAP=74.6689;SAR=0;SRF=138;SRP=302.673;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:49:49,0:49:1743:0:0:0,-14.7505,-157.153 0/1:61:33,28:33:1153:28:990:-71.0508,0,-85.7069 0/1:23:19,4:19:655:4:144:-6.38993,0,-52.3469 0/0:38:37,1:37:1293:1:36:0,-7.84086,-113.073 dDocent_Contig_4281 51 . G C 205.32 . AB=0.141414;ABP=113.58;AC=1;AF=0.125;AN=8;AO=14;CIGAR=1X;DP=246;DPB=246;DPRA=2.02041;EPP=33.4109;EPPR=506.792;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=571;QR=9187;RO=232;RPL=14;RPP=33.4109;RPPR=506.792;RPR=0;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=232;SRP=506.792;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:99:85,14:85:3323:14:571:-21.9299,0,-269.348 0/0:81:81,0:81:3246:0:0:0,-24.3834,-292.196 0/0:25:25,0:25:998:0:0:0,-7.52575,-90.1186 0/0:41:41,0:41:1620:0:0:0,-12.3422,-146.031 dDocent_Contig_4282 79 . C A 91.5218 . AB=0.181818;ABP=41.702;AC=2;AF=0.25;AN=8;AO=8;CIGAR=1X;DP=65;DPB=65;DPRA=2.09524;EPP=20.3821;EPPR=126.784;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.982456;PAO=0;PQA=0;PQR=0;PRO=0;QA=279;QR=2038;RO=57;RPL=8;RPP=20.3821;RPPR=126.784;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674 0/0:13:13,0:13:458:0:0:0,-3.91339,-41.5534 0/1:25:20,5:20:719:5:177:-8.75123,0,-57.5128 0/1:19:16,3:16:573:3:102:-3.79716,0,-46.1844 dDocent_Contig_4283 56 . G A 876.282 . AB=0.202899;ABP=214.619;AC=2;AF=0.25;AN=8;AO=59;CIGAR=1X;DP=499;DPB=499;DPRA=0.726115;EPP=131.127;EPPR=958.458;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2040;QR=15963;RO=440;RPL=59;RPP=131.127;RPPR=958.458;RPR=0;RUN=1;SAF=59;SAP=131.127;SAR=0;SRF=440;SRP=958.458;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:186:159,27:159:5832:27:941:-28.9924,0,-468.928 0/0:157:157,0:157:5735:0:0:0,-47.2617,-516.201 0/1:90:61,29:61:2195:29:987:-62.0337,0,-170.706 0/0:66:63,3:63:2201:3:112:0,-9.42198,-187.887 dDocent_Contig_4284 22 . C A 5711.69 . AB=0.449438;ABP=12.8917;AC=4;AF=0.5;AN=8;AO=200;CIGAR=1X;DP=445;DPB=445;DPRA=0;EPP=437.305;EPPR=532.85;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7908;QR=9855;RO=244;RPL=0;RPP=437.305;RPPR=532.85;RPR=200;RUN=1;SAF=200;SAP=437.305;SAR=0;SRF=244;SRP=532.85;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:123:70,53:70:2831:53:2097:-151.888,0,-217.853 0/1:139:76,62:76:3070:62:2463:-179.992,0,-234.529 0/1:139:78,61:78:3148:61:2424:-176.478,0,-241.539 0/1:44:20,24:20:806:24:924:-70.2084,0,-59.611 dDocent_Contig_4285 28 . C T 163.477 . AB=0.333333;ABP=8.07707;AC=2;AF=0.25;AN=8;AO=8;CIGAR=1X;DP=65;DPB=65;DPRA=0.75;EPP=20.3821;EPPR=126.784;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=0.375;PAIREDR=0.964912;PAO=0;PQA=0;PQR=0;PRO=0;QA=322;QR=2299;RO=57;RPL=0;RPP=20.3821;RPPR=126.784;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:20:20,0:20:811:0:0:0,-6.0206,-73.3049 0/0:24:23,1:23:917:1:41:0,-3.13015,-78.7333 0/1:11:6,5:6:243:5:199:-14.9761,0,-18.9363 0/1:10:8,2:8:328:2:82:-4.76938,0,-26.88 dDocent_Contig_4286 91 . T A 1073.74 . AB=0.215753;ABP=207.932;AC=4;AF=0.5;AN=8;AO=63;CIGAR=1X;DP=292;DPB=292;DPRA=0;EPP=139.813;EPPR=500.277;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.968254;PAIREDR=0.995633;PAO=0;PQA=0;PQR=0;PRO=0;QA=2233;QR=8132;RO=229;RPL=63;RPP=139.813;RPPR=500.277;RPR=0;RUN=1;SAF=63;SAP=139.813;SAR=0;SRF=229;SRP=500.277;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:80:67,13:67:2374:13:454:-17.11,0,-189.836 0/1:136:101,35:101:3579:35:1247:-71.5956,0,-281.38 0/1:49:37,12:37:1318:12:427:-24.0181,0,-104.172 0/1:27:24,3:24:861:3:105:-1.66828,0,-69.6844 dDocent_Contig_4287 26 . T G 83.4785 . AB=0.129032;ABP=77.1206;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X;DP=185;DPB=185;DPRA=1.34177;EPP=22.5536;EPPR=385.189;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.982955;PAO=0;PQA=0;PQR=0;PRO=0;QA=356;QR=7002;RO=176;RPL=0;RPP=22.5536;RPPR=385.189;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=176;SRP=385.189;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:66:66,0:66:2611:0:0:0,-19.868,-235.126 0/1:62:54,8:54:2176:8:315:-10.0468,0,-177.344 0/0:44:43,1:43:1693:1:41:0,-9.15075,-148.497 0/0:13:13,0:13:522:0:0:0,-3.91339,-47.3269 dDocent_Contig_4288 119 . A T 157.035 . AB=0.32;ABP=10.0459;AC=2;AF=0.25;AN=8;AO=8;CIGAR=1X;DP=43;DPB=43;DPRA=1.38889;EPP=20.3821;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=288;QR=1230;RO=35;RPL=0;RPP=20.3821;RPPR=79.0118;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=79.0118;SRR=35;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:8:8,0:8:277:0:0:0,-2.40824,-25.2665 0/1:12:8,4:8:285:4:144:-9.70126,0,-22.3823 0/0:10:10,0:10:351:0:0:0,-3.0103,-31.9281 0/1:13:9,4:9:317:4:144:-9.40023,0,-24.9569 dDocent_Contig_4289 12 . G T 83.3342 . AB=0.235294;ABP=13.3567;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=140;DPB=140;DPRA=0.414634;EPP=11.6962;EPPR=293.988;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=164;QR=5272;RO=134;RPL=0;RPP=11.6962;RPPR=293.988;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=134;SRP=293.988;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:56:54,0:54:2123:0:0:0,-16.2556,-190.857 0/0:16:16,0:16:591:0:0:0,-4.81648,-53.5144 0/0:51:51,0:51:2033:0:0:0,-15.3525,-183.161 0/1:17:13,4:13:525:4:164:-10.0324,0,-42.4792 dDocent_Contig_4290 107 . N G 185.509 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=6;CIGAR=1X;DP=6;DPB=6;DPRA=0;EPP=16.0391;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=1.69407e-21;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=189;QR=0;RO=0;RPL=0;RPP=16.0391;RPPR=0;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:103:-9.61002,-0.90309,0 1/1:2:0,2:0:0:2:52:-4.93894,-0.60206,0 ./.:.:.:.:.:.:.:. 1/1:1:0,1:0:0:1:34:-3.39891,-0.30103,0 dDocent_Contig_4291 13 . A G 6587.13 . AB=0.663551;ABP=77.5912;AC=4;AF=0.5;AN=8;AO=213;CIGAR=1X;DP=321;DPB=321;DPRA=0;EPP=465.534;EPPR=237.529;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=8467;QR=4212;RO=108;RPL=0;RPP=465.534;RPPR=237.529;RPR=213;RUN=1;SAF=213;SAP=465.534;SAR=0;SRF=108;SRP=237.529;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:120:42,78:42:1638:78:3075:-240.713,0,-111.543 0/1:115:49,66:49:1923:66:2671:-205.881,0,-138.669 0/1:53:13,40:13:496:40:1568:-125.403,0,-29.0289 0/1:33:4,29:4:155:29:1153:-94.1126,0,-4.39128 dDocent_Contig_4292 17 . A G 52.5037 . AB=0.2;ABP=14.7363;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=95;DPB=95;DPRA=0.5625;EPP=9.52472;EPPR=202.786;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.98913;PAO=0;PQA=0;PQR=0;PRO=0;QA=123;QR=3685;RO=92;RPL=0;RPP=9.52472;RPPR=202.786;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=92;SRP=202.786;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:32:32,0:32:1270:0:0:0,-9.63296,-114.568 0/0:28:28,0:28:1119:0:0:0,-8.42884,-100.989 0/0:20:20,0:20:812:0:0:0,-6.0206,-73.3951 0/1:15:12,3:12:484:3:123:-6.94934,0,-39.396 dDocent_Contig_4294 8 . A T 12814.7 . AB=0.817204;ABP=246.846;AC=6;AF=0.75;AN=8;AO=408;CIGAR=1X;DP=470;DPB=470;DPRA=0;EPP=888.971;EPPR=135.47;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=15624;QR=2334;RO=61;RPL=0;RPP=888.971;RPPR=135.47;RPR=408;RUN=1;SAF=408;SAP=888.971;SAR=0;SRF=61;SRP=135.47;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:206:21,184:21:803:184:7027:-570.219,0,-10.5039 1/1:131:6,125:6:219:125:4784:-410.529,-19.3725,0 0/1:73:29,44:29:1121:44:1698:-131.104,0,-79.2169 1/1:60:5,55:5:191:55:2115:-173.018,-0.503277,0 dDocent_Contig_4298 78 . T C 216.056 . AB=0.30303;ABP=14.1309;AC=2;AF=0.25;AN=8;AO=10;CIGAR=1X;DP=52;DPB=52;DPRA=1.73684;EPP=24.725;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=381;QR=1570;RO=41;RPL=10;RPP=24.725;RPPR=92.0407;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:11,6:11:427:6:225:-15.4913,0,-33.6675 0/1:16:11,4:11:404:4:156:-9.51218,0,-31.7973 0/0:10:10,0:10:389:0:0:0,-3.0103,-35.3684 0/0:9:9,0:9:350:0:0:0,-2.70927,-31.8614 dDocent_Contig_4300 131 . A G 7797.21 . AB=0.0523139;ABP=868.213;AC=0;AF=0;AN=8;AO=26;CIGAR=1X3M2X2M1X;DP=497;DPB=497;DPRA=0;EPP=59.4686;EPPR=289.645;GTI=0;LEN=1;MEANALT=3.75;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1008;QR=4489;RO=132;RPL=0;RPP=59.4686;RPPR=289.645;RPR=26;RUN=1;SAF=0;SAP=59.4686;SAR=26;SRF=0;SRP=289.645;SRR=132;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:173:55,1,38,76:55:1868:1,38,76:39,1380,3058:-235.489,-248.84,-400.028,-142.332,-290.605,-282.372,0,-148.288,-41.7612,-128.616 0|0:176:45,11,20,100:45:1561:11,20,100:437,716,3948:-311.324,-288.891,-412.46,-267.911,-358.809,-388.768,0,-90.8942,-69.9152,-96.7766 0|0:82:15,5,17,44:15:488:5,17,44:193,618,1768:-150.925,-139.59,-177.462,-106.358,-129.879,-140.612,-9.72471,-33.2435,0,-35.8545 0|0:66:17,9,10,29:17:572:9,10,29:339,345,1148:-89.3809,-66.722,-110.344,-67.0743,-85.625,-110.392,0,-18.5489,-18.904,-37.6054 dDocent_Contig_4301 104 . N A 554.503 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=19;CIGAR=4X;DP=19;DPB=19;DPRA=0;EPP=44.2683;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=4;NUMALT=1;ODDS=3.38813e-21;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=596;QR=0;RO=0;RPL=0;RPP=44.2683;RPPR=0;RPR=19;RUN=1;SAF=0;SAP=44.2683;SAR=19;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:1:0,1:0:0:1:33:-3.29913,-0.30103,0 1|1:10:0,10:0:0:10:333:-30.2938,-3.0103,0 1|1:5:0,5:0:0:5:155:-14.2563,-1.50515,0 1|1:3:0,3:0:0:3:75:-6.99817,-0.90309,0 dDocent_Contig_4302 97 . T A 5551.73 . AB=0.564171;ABP=16.3875;AC=3;AF=0.375;AN=8;AO=213;CIGAR=1X;DP=450;DPB=450;DPRA=0;EPP=465.534;EPPR=517.649;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7543;QR=8326;RO=237;RPL=213;RPP=465.534;RPPR=517.649;RPR=0;RUN=1;SAF=213;SAP=465.534;SAR=0;SRF=237;SRP=517.649;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:184:53,131:53:1876:131:4629:-361.39,0,-113.731 0/1:138:80,58:80:2779:58:2062:-144.311,0,-208.814 0/0:76:74,2:74:2610:2:72:0,-16.0416,-228.314 0/1:52:30,22:30:1061:22:780:-54.8693,0,-80.1487 dDocent_Contig_4303 46 . C T 47.5332 . AB=0.135135;ABP=45.7942;AC=2;AF=0.25;AN=8;AO=5;CIGAR=1X;DP=57;DPB=57;DPRA=1.85;EPP=13.8677;EPPR=45.7716;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=205;QR=1988;RO=52;RPL=0;RPP=13.8677;RPPR=45.7716;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:16,2:16:634:2:82:-2.36114,0,-51.9768 0/1:19:16,3:16:588:3:123:-5.74522,0,-47.5165 0/0:12:12,0:12:458:0:0:0,-3.61236,-41.5667 0/0:8:8,0:8:308:0:0:0,-2.40824,-28.08 dDocent_Contig_4304 126 . G T 21170.2 . AB=0.868613;ABP=326.385;AC=6;AF=0.75;AN=8;AO=753;CIGAR=1X;DP=827;DPB=827;DPRA=0;EPP=1638.13;EPPR=163.699;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=5.55112e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=25822;QR=2631;RO=74;RPL=0;RPP=1638.13;RPPR=163.699;RPR=753;RUN=1;SAF=0;SAP=1638.13;SAR=753;SRF=0;SRP=163.699;SRR=74;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:277:21,256:21:751:256:8799:-724.05,-15.4689,0 0/1:137:19,118:19:678:118:3994:-318.431,0,-20.1077 1/1:276:17,259:17:593:259:8920:-749.154,-29.388,0 0/1:137:17,120:17:609:120:4109:-328.779,0,-13.9015 dDocent_Contig_4305 29 . T A 95.5409 . AB=0.121951;ABP=104.805;AC=1;AF=0.125;AN=8;AO=13;CIGAR=1X;DP=257;DPB=257;DPRA=2.96154;EPP=31.2394;EPPR=532.85;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=512;QR=9641;RO=244;RPL=0;RPP=31.2394;RPPR=532.85;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=244;SRP=532.85;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:82:72,10:72:2849:10:392:-10.952,0,-231.842 0/0:99:97,2:97:3855:2:80:0,-22.2102,-339.377 0/0:50:49,1:49:1933:1:40:0,-11.0558,-170.184 0/0:26:26,0:26:1004:0:0:0,-7.82678,-90.6536 dDocent_Contig_4307 11 . G T 353.437 . AB=0.138462;ABP=224.4;AC=2;AF=0.25;AN=8;AO=29;CIGAR=2X;DP=361;DPB=361;DPRA=0.750751;EPP=65.983;EPPR=723.939;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1155;QR=12860;RO=332;RPL=0;RPP=65.983;RPPR=723.939;RPR=29;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=332;SRP=723.939;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:111:111,0:111:4247:0:0:0,-33.4143,-382.258 0|1:87:78,9:78:2987:9:363:-6.84505,0,-242.784 0|1:108:90,18:90:3556:18:712:-31.8966,0,-287.595 0|0:55:53,2:53:2070:2:80:0,-8.96507,-178.914 dDocent_Contig_4308 15 . A G 13441.4 . AB=0.811966;ABP=101.914;AC=7;AF=0.875;AN=8;AO=410;CIGAR=1X;DP=445;DPB=445;DPRA=0;EPP=893.314;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=0.921951;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=15843;QR=1364;RO=35;RPL=0;RPP=893.314;RPPR=79.0118;RPR=410;RUN=1;SAF=410;SAP=893.314;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:178:11,167:11:431:167:6442:-540.473,-14.4387,0 1/1:91:2,89:2:65:89:3446:-304.063,-21.2215,0 0/1:117:22,95:22:868:95:3638:-292.282,0,-43.2117 1/1:59:0,59:0:0:59:2317:-208.718,-17.7608,0 dDocent_Contig_4309 139 . T A 85.4298 . AB=0.25;ABP=11.6962;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=125;DPB=125;DPRA=0.440367;EPP=11.6962;EPPR=265.758;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=163;QR=4705;RO=121;RPL=4;RPP=11.6962;RPPR=265.758;RPR=0;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=265.758;SRR=121;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:45:45,0:45:1759:0:0:0,-13.5463,-158.526 0/0:35:35,0:35:1337:0:0:0,-10.536,-120.591 0/0:29:29,0:29:1160:0:0:0,-8.72987,-104.68 0/1:16:12,4:12:449:4:163:-10.2419,0,-35.9233 dDocent_Contig_4311 29 . G A 2840.7 . AB=0.0681818;ABP=216.802;AC=0;AF=0;AN=8;AO=9;CIGAR=1M2D12M1X3M;DP=265;DPB=260.053;DPRA=0;EPP=22.5536;EPPR=176.728;GTI=0;LEN=1;MEANALT=8;MQM=60;MQMR=60;NS=4;NUMALT=6;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=336;QR=2978;RO=80;RPL=0;RPP=22.5536;RPPR=176.728;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=80;SRP=176.728;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:49:6,0,31,8,0,2,0:6:221:0,31,8,0,2,0:0,1122,276,0,76,0:-94.114,-95.9202,-113.992,-4.33068,-22.4052,-13.0733,-73.5065,-91.5776,0,-89.1693,-95.9202,-113.992,-22.4052,-91.5776,-113.992,-89.6868,-107.758,-16.1702,-85.3443,-107.758,-107.156,-95.9202,-113.992,-22.4052,-91.5776,-113.992,-107.758,-113.992 0|0:85:30,6,28,2,0,8,5:30:1087:6,28,2,0,8,5:228,954,72,0,274,181:-68.3396,-58.6678,-145.606,0,-70.041,-80.3134,-71.4955,-141.538,-82.8676,-159.636,-77.3705,-147.412,-88.7422,-160.238,-166.113,-55.1345,-125.177,-66.508,-138.003,-143.877,-141.469,-62.5929,-132.636,-73.9658,-145.462,-151.336,-129.101,-149.831 0|0:84:33,0,21,1,14,4,0:33:1254:0,21,1,14,4,0:0,761,24,439,145,0:-52.2089,-62.1428,-165.002,0,-102.874,-96.5524,-60.2859,-163.144,-101.017,-162.843,-26.8731,-129.731,-67.6062,-127.874,-125.517,-50.3019,-153.163,-91.0345,-151.305,-117.893,-151.959,-62.1428,-165.002,-102.874,-163.144,-129.731,-153.163,-165.002 0|0:47:11,3,27,1,0,0,0:11:416:3,27,1,0,0,0:108,981,37,0,0,0:-76.805,-71.3045,-104.508,0,-25.3077,-25.9909,-77.089,-102.384,-31.0914,-110.894,-80.1163,-105.411,-34.1187,-111.195,-114.222,-80.1163,-105.411,-34.1187,-111.195,-114.222,-114.222,-80.1163,-105.411,-34.1187,-111.195,-114.222,-114.222,-114.222 dDocent_Contig_4312 36 . C A 4723.19 . AB=0.207143;ABP=107.303;AC=3;AF=0.375;AN=8;AO=29;CIGAR=2X;DP=181;DPB=181;DPRA=0;EPP=65.983;EPPR=48.6112;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1140;QR=829;RO=21;RPL=0;RPP=65.983;RPPR=48.6112;RPR=29;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:41:11,0,30:11:433:0,30:0,1202:-96.1123,-99.4237,-135.04,0,-36.0117,-26.9808 1|0:74:4,16,54:4:163:16,54:632,2122:-211.85,-161.052,-169.684,-38.5423,0,-35.7365 1|0:42:6,8,28:6:233:8,28:315,1110:-96.3303,-72.2231,-88.958,-6.77481,0,-17.4882 1|0:24:0,5,18:0:0:5,18:193,723:-75.4244,-59.5789,-58.0737,-15.8371,0,-10.4186 dDocent_Contig_4313 150 . C T 323.468 . AB=0.342105;ABP=11.239;AC=2;AF=0.25;AN=8;AO=13;CIGAR=1X;DP=52;DPB=52;DPRA=2.71429;EPP=31.2394;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=516;QR=1575;RO=39;RPL=0;RPP=31.2394;RPPR=87.6977;RPR=13;RUN=1;SAF=0;SAP=31.2394;SAR=13;SRF=0;SRP=87.6977;SRR=39;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:17,9:17:687:9:356:-24.5737,0,-54.3325 0/1:12:8,4:8:323:4:160:-11.1711,0,-25.8266 0/0:5:5,0:5:202:0:0:0,-1.50515,-18.5619 0/0:9:9,0:9:363:0:0:0,-2.70927,-33.0341 dDocent_Contig_4314 69 . G C 3018.28 . AB=0.7;ABP=23.8564;AC=6;AF=0.75;AN=8;AO=93;CIGAR=1X;DP=114;DPB=114;DPRA=0;EPP=204.957;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3703;QR=845;RO=21;RPL=93;RPP=204.957;RPPR=48.6112;RPR=0;RUN=1;SAF=93;SAP=204.957;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:45:3,42:3:120:42:1680:-140.233,-2.35866,0 0/1:25:8,17:8:317:17:675:-53.5553,0,-21.3688 0/1:35:10,25:10:408:25:996:-79.4011,0,-26.5445 1/1:9:0,9:0:0:9:352:-32.0366,-2.70927,0 dDocent_Contig_4315 94 . A G 7515.71 . AB=0.848214;ABP=120.968;AC=6;AF=0.75;AN=8;AO=231;CIGAR=1X;DP=255;DPB=255;DPRA=0;EPP=495.972;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.987013;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=9030;QR=937;RO=24;RPL=230;RPP=495.972;RPPR=55.1256;RPR=1;RUN=1;SAF=0;SAP=504.62;SAR=231;SRF=0;SRP=55.1256;SRR=24;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:74:4,70:4:159:70:2775:-235.173,-7.58427,0 1/1:69:3,66:3:107:66:2637:-227.482,-10.7929,0 0/1:68:9,59:9:346:59:2269:-183.904,0,-11.0191 0/1:44:8,36:8:325:36:1349:-108.409,0,-16.3743 dDocent_Contig_4316 8 . T C 76.4569 . AB=0.0976744;ABP=305.289;AC=1;AF=0.125;AN=8;AO=21;CIGAR=1X;DP=414;DPB=414;DPRA=3.24121;EPP=48.6112;EPPR=856.399;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=816;QR=15121;RO=393;RPL=0;RPP=48.6112;RPPR=856.399;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=393;SRP=856.399;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:215:194,21:194:7483:21:816:-9.04363,0,-608.572 0/0:73:73,0:73:2813:0:0:0,-21.9752,-253.343 0/0:70:70,0:70:2687:0:0:0,-21.0721,-242.018 0/0:56:56,0:56:2138:0:0:0,-16.8577,-192.647 dDocent_Contig_4317 17 . T C 51.4018 . AB=0.148148;ABP=32.0437;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=245;DPB=245;DPRA=0.37156;EPP=11.6962;EPPR=526.335;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=0.93361;PAO=0;PQA=0;PQR=0;PRO=0;QA=162;QR=9620;RO=241;RPL=0;RPP=11.6962;RPPR=526.335;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=241;SRP=526.335;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:79:79,0:79:3139:0:0:0,-23.7814,-282.592 0/0:85:85,0:85:3418:0:0:0,-25.5875,-307.651 0/0:54:54,0:54:2155:0:0:0,-16.2556,-194.124 0/1:27:23,4:23:908:4:162:-6.83915,0,-73.8961 dDocent_Contig_4318 11 . C T 228.406 . AB=0.118421;ABP=291.359;AC=3;AF=0.375;AN=8;AO=27;CIGAR=1X;DP=245;DPB=245;DPRA=4.47059;EPP=61.6401;EPPR=476.391;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.925926;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1053;QR=8695;RO=218;RPL=0;RPP=61.6401;RPPR=476.391;RPR=27;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=218;SRP=476.391;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:100:88,12:88:3499:12:457:-11.3739,0,-284.852 0/1:93:85,8:85:3393:8:318:-0.990834,0,-277.43 0/1:35:28,7:28:1115:7:278:-14.8541,0,-90.1019 0/0:17:17,0:17:688:0:0:0,-5.11751,-62.2499 dDocent_Contig_4319 16 . C A 290.1 . AB=0.168317;ABP=99.5226;AC=1;AF=0.125;AN=8;AO=17;CIGAR=1X;DP=285;DPB=285;DPRA=1.64674;EPP=39.9253;EPPR=584.965;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=672;QR=10750;RO=268;RPL=0;RPP=39.9253;RPPR=584.965;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=268;SRP=584.965;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:101:84,17:84:3344:17:672:-30.4079,0,-270.606 0/0:83:83,0:83:3362:0:0:0,-24.9855,-302.616 0/0:48:48,0:48:1907:0:0:0,-14.4494,-171.836 0/0:53:53,0:53:2137:0:0:0,-15.9546,-192.505 dDocent_Contig_4320 23 . A T 287.002 . AB=0.241379;ABP=36.7056;AC=1;AF=0.125;AN=8;AO=14;CIGAR=1X;DP=192;DPB=192;DPRA=1.29851;EPP=33.4109;EPPR=389.532;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=528;QR=7077;RO=178;RPL=0;RPP=33.4109;RPPR=389.532;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=178;SRP=389.532;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:70:70,0:70:2798:0:0:0,-21.0721,-251.931 0/1:58:44,14:44:1752:14:528:-30.3992,0,-140.443 0/0:27:27,0:27:1069:0:0:0,-8.12781,-96.4965 0/0:37:37,0:37:1458:0:0:0,-11.1381,-131.46 dDocent_Contig_4321 1 . N G 223.001 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=7;CIGAR=1X;DP=7;DPB=7;DPRA=0;EPP=18.2106;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=9.4572;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=244;QR=0;RO=0;RPL=0;RPP=18.2106;RPPR=0;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:7:0,7:0:0:7:244:-22.3001,-2.10721,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_4322 188 . C G 56.3338 . AB=0.151515;ABP=37.8197;AC=2;AF=0.25;AN=8;AO=6;CIGAR=1X;DP=77;DPB=77;DPRA=0.782609;EPP=16.0391;EPPR=157.185;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=241;QR=2809;RO=71;RPL=6;RPP=16.0391;RPPR=157.185;RPR=0;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=157.185;SRR=71;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:18,3:18:710:3:122:-5.05086,0,-57.9062 0/0:23:23,0:23:914:0:0:0,-6.92369,-82.5651 0/0:21:20,1:20:804:1:39:0,-2.42507,-68.7806 0/1:12:10,2:10:381:2:80:-3.97922,0,-31.0302 dDocent_Contig_4323 65 . G A 7818.68 . AB=0.711485;ABP=141.699;AC=4;AF=0.5;AN=8;AO=254;CIGAR=1X;DP=357;DPB=357;DPRA=0;EPP=554.564;EPPR=226.672;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.990291;PAO=0;PQA=0;PQR=0;PRO=0;QA=9957;QR=4081;RO=103;RPL=254;RPP=554.564;RPPR=226.672;RPR=0;RUN=1;SAF=254;SAP=554.564;SAR=0;SRF=103;SRP=226.672;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:98:31,67:31:1203:67:2559:-200.954,0,-79.0405 0/1:94:18,76:18:717:76:2992:-241.084,0,-36.5575 0/1:96:35,61:35:1405:61:2407:-187.894,0,-97.8056 0/1:69:19,50:19:756:50:1999:-159.334,0,-47.5917 dDocent_Contig_4324 10 . C T 3656.77 . AB=0.645349;ABP=34.5724;AC=5;AF=0.625;AN=8;AO=111;CIGAR=1X3M;DP=172;DPB=220;DPRA=0;EPP=244.044;EPPR=83.3548;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4438;QR=1454;RO=37;RPL=0;RPP=244.044;RPPR=83.3548;RPR=111;RUN=1;SAF=111;SAP=244.044;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:35:3,1,31:3:120:1,31:40,1243:-101.502,-99.11,-108.694,0,-6.59016,-0.553313 0|1:51:11,5,35:11:435:5,35:198,1405:-112.464,-99.4794,-133.771,0,-19.5016,-25.262 1|1:57:12,17,28:12:474:17,28:682,1119:-105.755,-53.1729,-87.0545,-17.1994,0,-47.7686 0|1:29:11,1,17:11:425:1,17:39,671:-51.9041,-52.0098,-86.5973,0,-31.6821,-29.7708 dDocent_Contig_4325 9 . G A 1146.31 . AB=0.248826;ABP=119.729;AC=2;AF=0.25;AN=8;AO=57;CIGAR=1X;DP=460;DPB=460;DPRA=0.802469;EPP=126.784;EPPR=878.114;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.6352;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2171;QR=15393;RO=403;RPL=0;RPP=126.784;RPPR=878.114;RPR=57;RUN=1;SAF=57;SAP=126.784;SAR=0;SRF=403;SRP=878.114;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:135:135,0:135:5160:0:0:0,-40.639,-461.889 0/1:142:104,38:104:3948:38:1449:-87.9417,0,-307.631 0/1:71:56,15:56:2151:15:568:-30.0875,0,-172.443 0/0:112:108,4:108:4134:4:154:0,-19.4819,-357.908 dDocent_Contig_4327 10 . T C 374.523 . AB=0.341463;ABP=11.961;AC=1;AF=0.125;AN=8;AO=15;CIGAR=1X;DP=194;DPB=194;DPRA=0.94;EPP=35.5824;EPPR=389.532;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=606;QR=6785;RO=178;RPL=0;RPP=35.5824;RPPR=389.532;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=178;SRP=389.532;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:41:27,14:27:1059:14:565:-38.8503,0,-83.2678 0/0:54:54,0:54:2041:0:0:0,-16.2556,-183.906 0/0:46:45,0:45:1718:0:0:0,-13.5463,-154.468 0/0:53:52,1:52:1967:1:41:0,-11.86,-173.171 dDocent_Contig_4329 46 . C T 1000.28 . AB=0.428571;ABP=6.73282;AC=3;AF=0.375;AN=8;AO=37;CIGAR=2M1X1M;DP=113;DPB=111.5;DPRA=0;EPP=83.3548;EPPR=161.528;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1479;QR=2879;RO=73;RPL=0;RPP=83.3548;RPPR=161.528;RPR=37;RUN=1;SAF=37;SAP=83.3548;SAR=0;SRF=73;SRP=161.528;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:35:19,0,16:19:753:0,16:0,643:-47.665,-53.3845,-115.363,0,-62.3775,-57.561 0|1:36:17,1,18:17:670:1,18:39,715:-53.7521,-55.6641,-110.485,0,-51.9215,-49.7086 0|0:29:28,0,1:28:1096:0,1:0,40:0,-8.42884,-98.5342,-4.73419,-95.2388,-94.9378 0|1:13:9,2,2:9:360:2,2:72,81:-3.99224,-0.849363,-29.8984,0,-23.8204,-29.0856 dDocent_Contig_4330 71 . G T 102.117 . AB=0.138889;ABP=84.5612;AC=1;AF=0.125;AN=8;AO=10;CIGAR=1X;DP=245;DPB=245;DPRA=1.24855;EPP=24.725;EPPR=513.306;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=366;QR=9088;RO=235;RPL=10;RPP=24.725;RPPR=513.306;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=235;SRP=513.306;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:72:62,10:62:2404:10:366:-11.6097,0,-194.855 0/0:63:63,0:63:2442:0:0:0,-18.9649,-219.929 0/0:53:53,0:53:2044:0:0:0,-15.9546,-184.157 0/0:57:57,0:57:2198:0:0:0,-17.1587,-198.008 dDocent_Contig_4331 72 . T A 254.708 . AB=0.167939;ABP=128.475;AC=4;AF=0.5;AN=8;AO=22;CIGAR=1X;DP=131;DPB=131;DPRA=0;EPP=50.7827;EPPR=239.701;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=785;QR=3738;RO=109;RPL=22;RPP=50.7827;RPPR=239.701;RPR=0;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=109;SRP=239.701;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:37:29,8:29:971:8:285:-14.856,0,-76.5543 0/1:59:51,8:51:1761:8:282:-7.9601,0,-141.009 0/1:17:15,2:15:509:2:73:-1.81379,0,-41.0126 0/1:18:14,4:14:497:4:145:-7.98708,0,-39.6458 dDocent_Contig_4332 15 . G T 5722.16 . AB=0.427368;ABP=24.7753;AC=4;AF=0.5;AN=8;AO=203;CIGAR=2X;DP=475;DPB=475;DPRA=0;EPP=443.819;EPPR=591.479;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=8021;QR=10618;RO=271;RPL=0;RPP=443.819;RPPR=591.479;RPR=203;RUN=1;SAF=203;SAP=443.819;SAR=0;SRF=271;SRP=591.479;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:159:74,85:74:2883:85:3357:-254.336,0,-211.721 0|1:171:102,69:102:3988:69:2715:-193.005,0,-307.466 0|1:91:61,30:61:2406:30:1194:-80.3449,0,-189.315 0|1:54:34,19:34:1341:19:755:-51.9273,0,-104.613 dDocent_Contig_4333 107 . N C 38.8004 . 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A T 168.279 . AB=0.149425;ABP=95.8844;AC=1;AF=0.125;AN=8;AO=13;CIGAR=1X;DP=302;DPB=302;DPRA=1.21395;EPP=31.2394;EPPR=630.566;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=493;QR=10990;RO=289;RPL=0;RPP=31.2394;RPPR=630.566;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=289;SRP=630.566;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:112:112,0:112:4290:0:0:0,-33.7154,-386.173 0/1:87:74,13:74:2799:13:493:-18.5268,0,-225.903 0/0:72:72,0:72:2727:0:0:0,-21.6742,-245.618 0/0:31:31,0:31:1174:0:0:0,-9.33193,-105.956 dDocent_Contig_4345 8 . C T 6459.12 . AB=0.555;ABP=13.5202;AC=4;AF=0.5;AN=8;AO=222;CIGAR=1X;DP=400;DPB=400;DPRA=0;EPP=485.077;EPPR=389.532;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=8587;QR=6880;RO=178;RPL=0;RPP=485.077;RPPR=389.532;RPR=222;RUN=1;SAF=222;SAP=485.077;SAR=0;SRF=178;SRP=389.532;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:144:66,78:66:2550:78:3013:-227.981,0,-186.343 0/1:77:23,54:23:891:54:2098:-165.865,0,-57.3296 0/1:132:59,73:59:2280:73:2824:-214.598,0,-165.678 0/1:47:30,17:30:1159:17:652:-44.8675,0,-90.4613 dDocent_Contig_4346 63 . A T 97.8062 . AB=0.214286;ABP=22.8638;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=86;DPB=86;DPRA=1.96552;EPP=18.2106;EPPR=149.488;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=57.9747;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.772152;PAO=0;PQA=0;PQR=0;PRO=0;QA=222;QR=2774;RO=79;RPL=7;RPP=18.2106;RPPR=174.557;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=76;SRP=149.488;SRR=3;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:22,6:22:780:6:214:-11.1786,0,-62.09 0/0:21:21,0:21:723:0:0:0,-6.32163,-65.3821 0/0:29:28,1:28:988:1:8:0,-7.92987,-82.4315 0/0:8:8,0:8:283:0:0:0,-2.40824,-25.8122 dDocent_Contig_4347 111 . T A 76.3987 . AB=0.238095;ABP=15.5221;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X1M1X;DP=76;DPB=76;DPRA=1.14545;EPP=13.8677;EPPR=155.013;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=167;QR=2329;RO=70;RPL=0;RPP=13.8677;RPPR=155.013;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=155.013;SRR=70;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:21:16,5:16:537:5:167:-9.03781,0,-42.3281 0|0:24:23,0:23:758:0:0:0,-6.92369,-68.4485 0|0:8:8,0:8:260:0:0:0,-2.40824,-23.717 0|0:23:23,0:23:774:0:0:0,-6.92369,-69.9738 dDocent_Contig_4348 58 . G T 235.257 . AB=0.153061;ABP=105.468;AC=1;AF=0.125;AN=8;AO=17;CIGAR=1X;DP=318;DPB=318;DPRA=1.58537;EPP=39.9253;EPPR=656.623;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=683;QR=11999;RO=301;RPL=17;RPP=39.9253;RPPR=656.623;RPR=0;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=301;SRP=656.623;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:98:83,15:83:3270:15:601:-24.9237,0,-264.86 0/0:97:95,2:95:3803:2:82:0,-21.4202,-334.491 0/0:72:72,0:72:2881:0:0:0,-21.6742,-259.391 0/0:51:51,0:51:2045:0:0:0,-15.3525,-184.236 dDocent_Contig_4349 21 . T C 9059.71 . AB=0.610309;ABP=54.2705;AC=4;AF=0.5;AN=8;AO=296;CIGAR=1X;DP=485;DPB=485;DPRA=0;EPP=645.766;EPPR=409.076;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=11769;QR=7507;RO=187;RPL=0;RPP=645.766;RPPR=409.076;RPR=296;RUN=1;SAF=296;SAP=645.766;SAR=0;SRF=187;SRP=409.076;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:98:21,77:21:839:77:3080:-247.773,0,-46.3212 0/1:146:37,108:37:1492:108:4314:-344.153,0,-90.4643 0/1:118:57,61:57:2298:61:2402:-180.809,0,-171.454 0/1:123:72,50:72:2878:50:1973:-140.633,0,-221.987 dDocent_Contig_4350 17 . A T 1137.16 . AB=0.0480148;ABP=1924.74;AC=0;AF=0;AN=8;AO=52;CIGAR=1X2M1X;DP=1573;DPB=1600.5;DPRA=0;EPP=115.927;EPPR=1108.29;GTI=0;LEN=1;MEANALT=6.33333;MQM=5.90385;MQMR=27.9902;NS=4;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=2081;QR=20216;RO=509;RPL=0;RPP=115.927;RPPR=1108.29;RPR=52;RUN=1;SAF=52;SAP=115.927;SAR=0;SRF=509;SRP=1108.29;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:637:205,28,390:205:8130:28,390:1130,15596:-29.8507,-84.964,-484.24,0,-401.194,-290.369 0|0:490:160,0,318:160:6397:0,318:0,12654:-52.6168,-100.782,-424.403,0,-323.687,-227.96 0|0:279:96,6,167:96:3780:6,167:242,6652:-25.7279,-53.2842,-250.263,0,-197.488,-148.548 0|0:167:48,18,97:48:1909:18,97:709,3876:-12.9184,-23.3411,-119.124,0,-97.2809,-72.0561 dDocent_Contig_4351 107 . N C 182.253 . AB=0;ABP=0;AC=4;AF=0.666667;AN=6;AO=7;CIGAR=1X;DP=8;DPB=8;DPRA=3.5;EPP=18.2106;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=190;QR=0;RO=0;RPL=0;RPP=18.2106;RPPR=0;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:6:0,6:0:0:6:165:-15.1214,-1.80618,0 ./.:.:.:.:.:.:.:. 1/1:1:0,1:0:0:1:25:-2.49986,-0.30103,0 0/0:1:0,0:0:0:0:0:0,0,0 dDocent_Contig_4352 33 . T C 2660.46 . AB=0.216549;ABP=399.396;AC=4;AF=0.5;AN=8;AO=123;CIGAR=1X;DP=568;DPB=568;DPRA=0;EPP=270.101;EPPR=969.316;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.00813008;PAIREDR=0.997753;PAO=0;PQA=0;PQR=0;PRO=0;QA=4926;QR=17666;RO=445;RPL=0;RPP=270.101;RPPR=969.316;RPR=123;RUN=1;SAF=123;SAP=270.101;SAR=0;SRF=445;SRP=969.316;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:193:153,40:153:6021:40:1615:-87.4802,0,-483.612 0/1:188:143,45:143:5720:45:1789:-104.631,0,-458.016 0/1:97:71,26:71:2822:26:1043:-64.9641,0,-224.899 0/1:90:78,12:78:3103:12:479:-16.3687,0,-252.268 dDocent_Contig_4353 38 . G T 54.5701 . AB=0.102564;ABP=163.532;AC=1;AF=0.125;AN=8;AO=12;CIGAR=1X;DP=410;DPB=410;DPRA=1.19795;EPP=29.068;EPPR=867.256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.997487;PAO=0;PQA=0;PQR=0;PRO=0;QA=467;QR=15774;RO=398;RPL=0;RPP=29.068;RPPR=867.256;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=398;SRP=867.256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:139:139,0:139:5506:0:0:0,-41.8432,-495.397 0/1:117:105,12:105:4148:12:467:-7.15598,0,-338.103 0/0:113:113,0:113:4486:0:0:0,-34.0164,-403.694 0/0:41:41,0:41:1634:0:0:0,-12.3422,-147.294 dDocent_Contig_4354 38 . T G 43.2216 . AB=0.111111;ABP=73.9451;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X;DP=127;DPB=127;DPRA=2.01852;EPP=22.5536;EPPR=259.244;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=358;QR=4676;RO=118;RPL=0;RPP=22.5536;RPPR=259.244;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=118;SRP=259.244;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:54:48,6:48:1896:6:240:-5.72003,0,-154.589 0/0:30:28,2:28:1118:2:81:0,-1.34517,-93.218 0/0:25:24,1:24:944:1:37:0,-3.82792,-81.5668 0/0:18:18,0:18:718:0:0:0,-5.41854,-64.9461 dDocent_Contig_4355 1 . N A 55.1423 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=5;CIGAR=1X;DP=5;DPB=5;DPRA=0;EPP=13.8677;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=12;MQMR=0;NS=1;NUMALT=1;ODDS=8.07091;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=185;QR=0;RO=0;RPL=0;RPP=13.8677;RPPR=0;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:5:0,5:0:0:5:185:-5.51409,-1.50515,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_4356 107 . N A 57.9515 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=61;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:61:-5.79407,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_4357 30 . C G 537.785 . AB=0.244898;ABP=58.405;AC=3;AF=0.375;AN=8;AO=24;CIGAR=1X;DP=112;DPB=112;DPRA=2.33333;EPP=55.1256;EPPR=194.1;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.988636;PAO=0;PQA=0;PQR=0;PRO=0;QA=973;QR=3537;RO=88;RPL=0;RPP=55.1256;RPPR=194.1;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=88;SRP=194.1;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:14:14,0:14:570:0:0:0,-4.21442,-51.642 0/1:40:33,7:33:1325:7:282:-13.7116,0,-107.473 0/1:31:22,9:22:874:9:366:-23.9732,0,-69.6388 0/1:27:19,8:19:768:8:325:-21.4916,0,-61.313 dDocent_Contig_4358 14 . C T 249.81 . AB=0.194805;ABP=65.3062;AC=2;AF=0.25;AN=8;AO=16;CIGAR=1X;DP=157;DPB=157;DPRA=1.94203;EPP=37.7539;EPPR=309.188;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=589;QR=5633;RO=141;RPL=0;RPP=37.7539;RPPR=309.188;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=141;SRP=309.188;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:23:23,0:23:898:0:0:0,-6.92369,-81.1232 0/0:57:56,1:56:2262:1:41:0,-13.0641,-199.645 0/1:39:28,11:28:1125:11:423:-26.6785,0,-89.7949 0/1:38:34,4:34:1348:4:125:-0.114118,0,-110.141 dDocent_Contig_4359 14 . C T 1342.93 . AB=0.337662;ABP=38.2615;AC=4;AF=0.5;AN=8;AO=52;CIGAR=1X;DP=154;DPB=154;DPRA=0;EPP=115.927;EPPR=224.5;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.990196;PAO=0;PQA=0;PQR=0;PRO=0;QA=2074;QR=4043;RO=102;RPL=0;RPP=115.927;RPPR=224.5;RPR=52;RUN=1;SAF=52;SAP=115.927;SAR=0;SRF=102;SRP=224.5;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:44:24,20:24:950:20:796:-58.7122,0,-72.5617 0/1:47:41,6:41:1627:6:242:-8.00891,0,-132.526 0/1:46:26,20:26:1024:20:798:-58.2938,0,-78.6131 0/1:17:11,6:11:442:6:238:-16.6757,0,-35.0187 dDocent_Contig_4360 30 . A C 555.542 . AB=0.362069;ABP=12.5947;AC=2;AF=0.25;AN=8;AO=21;CIGAR=1X;DP=108;DPB=108;DPRA=1.16;EPP=48.6112;EPPR=191.928;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.8506;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=838;QR=3423;RO=87;RPL=0;RPP=48.6112;RPPR=191.928;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=87;SRP=191.928;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:39:20,19:20:800:19:759:-56.8915,0,-60.5772 0/0:27:27,0:27:1039:0:0:0,-8.12781,-93.7887 0/0:23:23,0:23:898:0:0:0,-6.92369,-81.1255 0/1:19:17,2:17:686:2:79:-1.77767,0,-56.3502 dDocent_Contig_4361 1 . N G 76.1025 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X3M1X;DP=3;DPB=6.2;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=41;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=37;PRO=1;QA=87;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:3:0,3:0:0:3:87:-7.6097,-0.90309,0 .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. dDocent_Contig_4362 45 . C T 40.465 . AB=0.10101;ABP=139.901;AC=1;AF=0.125;AN=8;AO=22;CIGAR=1X;DP=414;DPB=414;DPRA=0;EPP=6.56362;EPPR=854.227;GTI=0;LEN=1;MEANALT=1;MQM=59;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=826;QR=15566;RO=392;RPL=14;RPP=6.56362;RPPR=854.227;RPR=8;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=392;SRP=854.227;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:165:157,8:157:6248:8:299:0,-22.4838,-534.899 0/0:96:93,3:93:3698:3:103:0,-19.2937,-323.226 0/1:99:89,10:89:3537:10:391:-5.74543,0,-288.568 0/0:54:53,1:53:2083:1:33:0,-12.9565,-184.359 dDocent_Contig_4363 105 . N G 122.992 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=4;CIGAR=3X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=7.37776;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=133;QR=0;RO=0;RPL=0;RPP=11.6962;RPPR=0;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. 1|1:4:0,4:0:0:4:133:-12.299,-1.20412,0 .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. dDocent_Contig_4364 96 . A G 2431.51 . AB=0.680851;ABP=43.067;AC=4;AF=0.5;AN=8;AO=96;CIGAR=1X;DP=141;DPB=141;DPRA=0;EPP=211.472;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3239;QR=1548;RO=44;RPL=96;RPP=211.472;RPPR=98.5551;RPR=0;RUN=1;SAF=96;SAP=211.472;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:51:7,44:7:251:44:1471:-117.329,0,-7.58532 0/1:33:4,28:4:141:28:954:-76.4579,0,-3.27748 0/1:36:21,15:21:734:15:506:-35.0253,0,-55.5454 0/1:21:12,9:12:422:9:308:-21.7308,0,-31.9938 dDocent_Contig_4365 49 . T C 7524.16 . AB=0.788274;ABP=224.607;AC=4;AF=0.5;AN=8;AO=242;CIGAR=1X;DP=307;DPB=307;DPRA=0;EPP=528.507;EPPR=144.156;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=9441;QR=1591;RO=65;RPL=0;RPP=528.507;RPPR=144.156;RPR=242;RUN=1;SAF=242;SAP=528.507;SAR=0;SRF=65;SRP=144.156;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:133:19,114:19:453:114:4474:-362.585,0,-0.967205 0/1:82:32,50:32:769:50:1942:-150.288,0,-44.7596 0/1:62:10,52:10:259:52:2056:-166.565,0,-4.90284 0/1:30:4,26:4:110:26:969:-78.4609,0,-1.1426 dDocent_Contig_4366 9 . G A 82.0241 . AB=0.155556;ABP=49.3833;AC=2;AF=0.25;AN=8;AO=7;CIGAR=1X;DP=77;DPB=77;DPRA=1.40625;EPP=18.2106;EPPR=155.013;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=264;QR=2642;RO=70;RPL=0;RPP=18.2106;RPPR=155.013;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=70;SRP=155.013;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:20,5:20:758:5:186:-9.57489,0,-61.02 0/1:20:18,2:18:690:2:78:-1.38287,0,-56.4134 0/0:9:9,0:9:345:0:0:0,-2.70927,-31.4082 0/0:23:23,0:23:849:0:0:0,-6.92369,-76.7228 dDocent_Contig_4367 8 . C T 17548.4 . AB=0.737589;ABP=72.1432;AC=7;AF=0.875;AN=8;AO=533;CIGAR=1X2M1X;DP=590;DPB=590;DPRA=0;EPP=1160.41;EPPR=122.441;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.998124;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=20738;QR=2147;RO=55;RPL=0;RPP=1160.41;RPPR=122.441;RPR=533;RUN=1;SAF=533;SAP=1160.41;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:141:36,104:36:1405:104:4055:-322.468,0,-84.1914 1|1:170:13,156:13:508:156:6055:-498.769,-5.21406,0 1|1:143:0,143:0:0:143:5575:-501.682,-43.0473,0 1|1:136:6,130:6:234:130:5053:-433.316,-19.509,0 dDocent_Contig_4368 169 . G A 1781.39 . AB=0.583333;ABP=6.62942;AC=5;AF=0.625;AN=8;AO=57;CIGAR=1X;DP=82;DPB=82;DPRA=0;EPP=126.784;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2225;QR=968;RO=25;RPL=57;RPP=126.784;RPPR=57.2971;RPR=0;RUN=1;SAF=0;SAP=126.784;SAR=57;SRF=0;SRP=57.2971;SRR=25;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:9,12:9:348:12:485:-37.6804,0,-25.3566 1/1:22:0,22:0:0:22:841:-75.9918,-6.62266,0 0/1:23:10,13:10:383:13:504:-38.776,0,-27.9004 0/1:16:6,10:6:237:10:395:-31.0889,0,-16.8868 dDocent_Contig_4369 50 . T A 819.498 . AB=0.110454;ABP=671.263;AC=3;AF=0.375;AN=8;AO=56;CIGAR=1X1M;DP=718;DPB=718;DPRA=0.800948;EPP=124.613;EPPR=1401.44;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2205;QR=25457;RO=644;RPL=56;RPP=124.613;RPPR=1401.44;RPR=0;RUN=1;SAF=56;SAP=124.613;SAR=0;SRF=644;SRP=1401.44;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:186:159,0,27:159:6274:0,27:0,1055:-39.2446,-87.1084,-603.291,0,-516.573,-508.446 0|0:211:211,0,0:211:8392:0,0:0,0:0,-63.5173,-754.828,-63.5173,-754.828,-754.828 0|1:126:104,0,22:104:4129:0,22:0,875:-41.1322,-72.4393,-412.333,0,-340.291,-333.668 0|1:195:170,18,7:170:6662:18,7:707,275:-6.97083,0,-542.364,-35.5296,-525.166,-581.205 dDocent_Contig_4370 11 . C G 171.35 . AB=0.0596026;ABP=257.389;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1M8I1X1M1X1M;DP=458;DPB=477.8;DPRA=1.47557;EPP=22.5536;EPPR=178.9;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.962963;PAO=0;PQA=0;PQR=0;PRO=0;QA=340;QR=3199;RO=81;RPL=0;RPP=22.5536;RPPR=178.9;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=81;SRP=178.9;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:151:31,8,9:31:1222:8,9:310,340:-18.5325,-2.39708,-100.532,0,-75.0759,-97.8337 0|0:175:36,0,0:36:1426:0,0:0,0:0,-10.8371,-128.213,-10.8371,-128.213,-128.213 0|0:67:6,0,0:6:238:0,0:0,0:0,-1.80618,-21.3991,-1.80618,-21.3991,-21.3991 0|0:65:8,0,0:8:313:0,0:0,0:0,-2.40824,-28.1449,-2.40824,-28.1449,-28.1449 dDocent_Contig_4374 98 . N T 257.298 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=8;CIGAR=1M1D5M1X;DP=8;DPB=9.375;DPRA=0;EPP=20.3821;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=275;QR=0;RO=0;RPL=8;RPP=20.3821;RPPR=0;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. 1|1:4:0,4:0:0:4:136:-12.5758,-1.20412,0 1|1:4:0,4:0:0:4:139:-12.8527,-1.20412,0 dDocent_Contig_4375 17 . T G 14904 . AB=0.661899;ABP=178.086;AC=4;AF=0.5;AN=8;AO=509;CIGAR=2X;DP=769;DPB=769;DPRA=0;EPP=1108.29;EPPR=563.25;GTI=0;LEN=1;MEANALT=1.5;MQM=48.8821;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.864341;PAO=0;PQA=0;PQR=0;PRO=0;QA=19588;QR=10265;RO=258;RPL=0;RPP=1108.29;RPPR=563.25;RPR=509;RUN=1;SAF=509;SAP=1108.29;SAR=0;SRF=258;SRP=563.25;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:246:64,182:64:2539:182:7028:-547.121,0,-154.599 0|1:266:81,183:81:3223:183:7009:-535.524,0,-210.326 0|1:171:82,89:82:3261:89:3441:-254.286,0,-242.092 0|1:86:31,55:31:1242:55:2110:-160.869,0,-86.1633 dDocent_Contig_4376 140 . T C 1548.91 . AB=0.403846;ABP=15.538;AC=4;AF=0.5;AN=8;AO=63;CIGAR=1X;DP=156;DPB=156;DPRA=0;EPP=139.813;EPPR=204.957;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.952381;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2310;QR=3528;RO=93;RPL=0;RPP=139.813;RPPR=204.957;RPR=63;RUN=1;SAF=0;SAP=139.813;SAR=63;SRF=0;SRP=204.957;SRR=93;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:37:29,8:29:1107:8:294:-15.6743,0,-88.7945 0/1:67:39,28:39:1461:28:1035:-73.2961,0,-111.596 0/1:38:14,24:14:540:24:870:-67.1793,0,-37.5065 0/1:14:11,3:11:420:3:111:-6.13907,0,-33.9363 dDocent_Contig_4378 117 . T C 2358.76 . AB=0.657718;ABP=35.2035;AC=4;AF=0.5;AN=8;AO=98;CIGAR=1X;DP=149;DPB=149;DPRA=0;EPP=215.815;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.941176;PAO=0;PQA=0;PQR=0;PRO=0;QA=3188;QR=1739;RO=51;RPL=0;RPP=215.815;RPPR=113.755;RPR=98;RUN=1;SAF=0;SAP=215.815;SAR=98;SRF=0;SRP=113.755;SRR=51;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:14,17:14:478:17:569:-42.1958,0,-34.0137 0/1:36:13,23:13:451:23:707:-53.0786,0,-30.0845 0/1:35:12,23:12:406:23:776:-59.6165,0,-26.3295 0/1:47:12,35:12:404:35:1136:-88.383,0,-22.5359 dDocent_Contig_4379 54 . T C 6804.77 . AB=0.394864;ABP=62.8251;AC=4;AF=0.5;AN=8;AO=246;CIGAR=1X;DP=623;DPB=623;DPRA=0;EPP=537.193;EPPR=819.484;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=9719;QR=14805;RO=376;RPL=246;RPP=537.193;RPPR=819.484;RPR=0;RUN=1;SAF=246;SAP=537.193;SAR=0;SRF=376;SRP=819.484;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:224:148,76:148:5815:76:3000:-202.666,0,-455.738 0/1:202:97,104:97:3805:104:4092:-307.558,0,-281.77 0/1:133:92,41:92:3646:41:1636:-107.431,0,-288.13 0/1:64:39,25:39:1539:25:991:-70.22,0,-119.484 dDocent_Contig_4380 8 . T A 353.558 . AB=0.186916;ABP=94.1107;AC=1;AF=0.125;AN=8;AO=23;CIGAR=1X;DP=245;DPB=245;DPRA=2.58333;EPP=52.9542;EPPR=485.077;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=883;QR=8517;RO=222;RPL=0;RPP=52.9542;RPPR=485.077;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=222;SRP=485.077;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:73:72,1:72:2749:1:39:0,-18.0786,-243.693 0/1:107:87,20:87:3333:20:766:-37.0548,0,-267.898 0/0:37:35,2:35:1350:2:78:0,-3.73464,-114.38 0/0:28:28,0:28:1085:0:0:0,-8.42884,-97.9546 dDocent_Contig_4381 40 . G T 4957.92 . AB=0.207612;ABP=217.61;AC=1;AF=0.125;AN=8;AO=60;CIGAR=1X5M;DP=289;DPB=291.167;DPRA=0;EPP=133.299;EPPR=133.299;GTI=0;LEN=1;MEANALT=3.75;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=5.55112e-17;PAIRED=0.983333;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2252;QR=2333;RO=60;RPL=0;RPP=133.299;RPPR=133.299;RPR=60;RUN=1;SAF=60;SAP=133.299;SAR=0;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:95:25,1,24,40:25:971:1,24,40:40,894,1587:-123.118,-127.349,-206.834,-57.4788,-133.967,-130.038,0,-76.4964,-6.62579,-67.7507 1|0:91:11,6,21,52:11:424:6,21,52:233,799,2076:-198.388,-182.555,-215.563,-136.172,-151.841,-164.664,-30.7123,-46.3829,0,-49.8754 0|0:71:18,4,11,38:18:711:4,11,38:158,405,1491:-117.204,-109.62,-166.926,-89.5128,-135.02,-144.711,0,-45.5162,-25.4137,-47.08 0|0:32:6,2,4,20:6:227:2,4,20:63,154,804:-64.4799,-61.2257,-79.2275,-53.6429,-67.1865,-71.0434,0,-13.5604,-5.96426,-12.5956 dDocent_Contig_4382 62 . G T 1714.57 . 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T G 784.832 . AB=0.196891;ABP=157.027;AC=2;AF=0.25;AN=8;AO=40;CIGAR=1X2M1X;DP=240;DPB=240;DPRA=0;EPP=89.8692;EPPR=406.904;GTI=0;LEN=1;MEANALT=2.25;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1573;QR=7304;RO=186;RPL=40;RPP=89.8692;RPPR=406.904;RPR=0;RUN=1;SAF=40;SAP=89.8692;SAR=0;SRF=186;SRP=406.904;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:75:61,6,7:61:2408:6,7:238,283:-4.98896,-3.75182,-200.085,0,-178.558,-196.042 0|1:75:48,25,2:48:1893:25,2:978,80:-65.9428,0,-148.214,-73.8016,-149.15,-228.947 0|1:43:33,7,3:33:1292:7,3:278,120:-12.9492,0,-104.111,-12.9977,-96.3325,-118.316 0|0:47:44,2,1:44:1711:2,1:79,40:0,-6.74766,-146.726,-9.94859,-144.033,-150.233 dDocent_Contig_4387 39 . G T 332.41 . AB=0.185185;ABP=95.9815;AC=4;AF=0.5;AN=8;AO=20;CIGAR=1X;DP=108;DPB=108;DPRA=0;EPP=46.4397;EPPR=194.1;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=795;QR=3492;RO=88;RPL=0;RPP=46.4397;RPPR=194.1;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=88;SRP=194.1;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:17,2:17:675:2:81:-1.96616,0,-55.3619 0/1:60:48,12:48:1887:12:485:-25.94,0,-151.979 0/1:9:7,2:7:284:2:70:-3.93621,0,-23.2241 0/1:20:16,4:16:646:4:159:-8.67135,0,-52.4539 dDocent_Contig_4388 198 . A G 90.0088 . AB=0.208333;ABP=20.744;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=111;DPB=111;DPRA=0.591667;EPP=20.3821;EPPR=226.672;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=283;QR=3696;RO=103;RPL=8;RPP=20.3821;RPPR=226.672;RPR=0;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=226.672;SRR=103;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:40:40,0:40:1438:0:0:0,-12.0412,-129.702 0/0:30:29,1:29:1073:1:39:0,-5.13434,-92.9784 0/1:24:19,5:19:648:5:195:-10.6995,0,-51.4052 0/0:17:15,2:15:537:2:49:0,-0.465777,-44.0083 dDocent_Contig_4389 14 . C G 1218.27 . AB=0.173028;ABP=367.956;AC=2;AF=0.25;AN=8;AO=84;CIGAR=2X;DP=607;DPB=607;DPRA=0;EPP=185.414;EPPR=1138.69;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3340;QR=20840;RO=523;RPL=0;RPP=185.414;RPPR=1138.69;RPR=84;RUN=1;SAF=84;SAP=185.414;SAR=0;SRF=523;SRP=1138.69;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:208:171,37:171:6822:37:1469:-69.8468,0,-551.067 0|1:185:154,31:154:6098:31:1231:-55.3777,0,-492.924 0|0:152:141,11:141:5664:11:438:0,-5.98253,-469.792 0|0:62:57,5:57:2256:5:202:0,-0.101781,-184.645 dDocent_Contig_4390 64 . C T 98.4418 . AB=0.152174;ABP=51.3492;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=235;DPB=235;DPRA=0.730159;EPP=18.2106;EPPR=498.106;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=278;QR=8817;RO=228;RPL=7;RPP=18.2106;RPPR=498.106;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=228;SRP=498.106;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:89:89,0:89:3415:0:0:0,-26.7917,-307.443 0/1:46:39,7:39:1526:7:278:-11.5431,0,-123.745 0/0:53:53,0:53:2040:0:0:0,-15.9546,-183.809 0/0:47:47,0:47:1836:0:0:0,-14.1484,-165.46 dDocent_Contig_4391 65 . G A 3131.68 . AB=0.102564;ABP=110.025;AC=5;AF=0.625;AN=8;AO=9;CIGAR=1X3M;DP=154;DPB=154;DPRA=0;EPP=22.5536;EPPR=94.2121;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=351;QR=1548;RO=42;RPL=9;RPP=22.5536;RPPR=94.2121;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:32:0,31,1:0:0:31,1:1180,39:-106.109,-9.33193,0,-102.902,-5.7364,-102.601 0|1:38:15,17,6:15:560:17,6:640,234:-47.9153,0,-40.7229,-33.1926,-26.601,-77.2372 0|1:44:13,31,0:13:485:31,0:1189,0:-94.0626,0,-30.75,-97.976,-40.0819,-137.682 0|1:40:14,24,2:14:503:24,2:911,78:-70.4799,0,-33.7768,-68.2817,-34.5859,-108.7 dDocent_Contig_4392 92 . C G 77865.7 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=2730;CIGAR=1X;DP=2949;DPB=2949;DPRA=0;EPP=5931.13;EPPR=465.534;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.999267;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=93576;QR=7035;RO=213;RPL=2730;RPP=5931.13;RPPR=465.534;RPR=0;RUN=1;SAF=2730;SAP=5931.13;SAR=0;SRF=213;SRP=465.534;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1210:74,1134:74:2341:1134:38866:-3286.06,-153.061,0 1/1:777:68,708:68:2325:708:24262:-1973.61,-24.4318,0 1/1:560:48,511:48:1602:511:17508:-1431.03,-23.9186,0 1/1:402:23,377:23:767:377:12940:-1095.17,-51.4204,0 dDocent_Contig_4393 12 . G A 1245.84 . AB=0.102628;ABP=2769.41;AC=3;AF=0.375;AN=8;AO=272;CIGAR=1X;DP=2721;DPB=2721;DPRA=0;EPP=593.651;EPPR=5312.26;GTI=0;LEN=1;MEANALT=1.75;MQM=57.7463;MQMR=59.6127;NS=4;NUMALT=1;ODDS=0;PAIRED=0.452206;PAIREDR=0.566462;PAO=0;PQA=0;PQR=0;PRO=0;QA=10803;QR=97298;RO=2445;RPL=0;RPP=593.651;RPPR=5312.26;RPR=272;RUN=1;SAF=272;SAP=593.651;SAR=0;SRF=2445;SRP=5312.26;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:831:759,71:759:30249:71:2815:-0.257151,0,-2468.23 0/0:704:638,65:638:25381:65:2588:0,-2.77816,-2060.98 0/1:848:747,101:747:29739:101:3989:-102.282,0,-2412.13 0/1:338:301,35:301:11929:35:1411:-25.6974,0,-966.13 dDocent_Contig_4394 38 . G T 671.828 . AB=0.611111;ABP=6.8707;AC=1;AF=0.125;AN=8;AO=22;CIGAR=1X;DP=90;DPB=90;DPRA=2;EPP=50.7827;EPPR=150.67;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=879;QR=2695;RO=68;RPL=0;RPP=50.7827;RPPR=150.67;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=68;SRP=150.67;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:14,22:14:556:22:879:-68.5807,0,-39.5405 0/0:27:27,0:27:1070:0:0:0,-8.12781,-96.5896 0/0:16:16,0:16:638:0:0:0,-4.81648,-57.7536 0/0:11:11,0:11:431:0:0:0,-3.31133,-39.1354 dDocent_Contig_4395 23 . C A 18129.1 . AB=0.540361;ABP=17.9095;AC=6;AF=0.75;AN=8;AO=569;CIGAR=1X1M;DP=1053;DPB=1053;DPRA=0;EPP=1238.58;EPPR=563.25;GTI=0;LEN=1;MEANALT=2.25;MQM=59.6837;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.991213;PAIREDR=0.98062;PAO=0;PQA=0;PQR=0;PRO=0;QA=22397;QR=10215;RO=258;RPL=0;RPP=1238.58;RPPR=563.25;RPR=569;RUN=1;SAF=569;SAP=1238.58;SAR=0;SRF=258;SRP=563.25;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:443:114,77,251:114:4516:77,251:3050,9945:-783.914,-568.73,-917.233,0,-122.182,-296.125 0|1:387:103,90,194:103:4105:90,194:3533,7622:-595.04,-339.342,-650.282,0,-51.3365,-279.637 1|1:142:29,42,71:29:1124:42,71:1656,2794:-264.614,-137.484,-217.169,-43.5353,0,-114.49 1|1:81:12,16,53:12:470:16,53:633,2036:-176.736,-128.442,-162.273,-13.2612,0,-35.9508 dDocent_Contig_4396 148 . A G 55.516 . AB=0.214286;ABP=12.937;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=66;DPB=66;DPRA=1.64;EPP=13.8677;EPPR=135.47;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=201;QR=2457;RO=61;RPL=0;RPP=13.8677;RPPR=135.47;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=135.47;SRR=61;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:13:13,0:13:515:0:0:0,-3.91339,-46.6889 0/0:27:25,2:25:1010:2:78:0,-0.724509,-83.7913 0/1:14:11,3:11:446:3:123:-7.25037,0,-36.2816 0/0:12:12,0:12:486:0:0:0,-3.61236,-44.0913 dDocent_Contig_4397 31 . G A 2089.47 . AB=0.228029;ABP=273.495;AC=3;AF=0.375;AN=8;AO=103;CIGAR=1X;DP=603;DPB=603;DPRA=0;EPP=226.672;EPPR=1088.75;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4056;QR=19836;RO=500;RPL=0;RPP=226.672;RPPR=1088.75;RPR=103;RUN=1;SAF=103;SAP=226.672;SAR=0;SRF=500;SRP=1088.75;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:204:160,44:160:6379:44:1727:-94.24,0,-512.433 0/0:182:175,7:175:6904:7:275:0,-29.6694,-595.924 0/1:121:80,41:80:3181:41:1633:-110.77,0,-249.93 0/1:96:85,11:85:3372:11:421:-9.33466,0,-274.63 dDocent_Contig_4398 117 . T G 5247.04 . AB=0.707692;ABP=76.072;AC=5;AF=0.625;AN=8;AO=196;CIGAR=1X;DP=255;DPB=255;DPRA=0;EPP=428.619;EPPR=128.956;GTI=0;LEN=1;MEANALT=1.25;MQM=59.8265;MQMR=59.069;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=0.989796;PAIREDR=0.982759;PAO=0;PQA=0;PQR=0;PRO=0;QA=6602;QR=1940;RO=58;RPL=0;RPP=428.619;RPPR=120.42;RPR=196;RUN=1;SAF=0;SAP=428.619;SAR=196;SRF=1;SRP=120.42;SRR=57;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:99:17,81:17:590:81:2740:-217.087,0,-23.7558 0/1:61:25,36:25:823:36:1218:-91.5572,0,-56.0105 0/1:35:14,21:14:458:21:696:-52.4141,0,-28.4587 1/1:60:2,58:2:69:58:1948:-169.044,-11.5091,0 dDocent_Contig_4399 18 . T C 12842.9 . AB=0.485991;ABP=4.59211;AC=4;AF=0.5;AN=8;AO=451;CIGAR=1X;DP=928;DPB=928;DPRA=0;EPP=982.344;EPPR=1038.8;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.997904;PAO=0;PQA=0;PQR=0;PRO=0;QA=17455;QR=18351;RO=477;RPL=0;RPP=982.344;RPPR=1038.8;RPR=451;RUN=1;SAF=451;SAP=982.344;SAR=0;SRF=477;SRP=1038.8;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:336:180,156:180:6916:156:6052:-443.418,0,-521.134 0/1:280:127,153:127:4914:153:5956:-451.632,0,-357.95 0/1:204:101,103:101:3866:103:3930:-292.353,0,-286.601 0/1:108:69,39:69:2655:39:1517:-104.284,0,-206.616 dDocent_Contig_4401 9 . G T 5044.58 . AB=0.139113;ABP=564.108;AC=0;AF=0;AN=8;AO=69;CIGAR=1X3M1X6M;DP=496;DPB=496;DPRA=0;EPP=152.842;EPPR=430.79;GTI=0;LEN=1;MEANALT=5.5;MQM=60;MQMR=58.3807;NS=4;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=0.791878;PAO=0;PQA=0;PQR=0;PRO=0;QA=2732;QR=7722;RO=197;RPL=0;RPP=152.842;RPPR=430.79;RPR=69;RUN=1;SAF=69;SAP=152.842;SAR=0;SRF=197;SRP=430.79;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:214:82,52,9,0,68:82:3224:52,9,0,68:2063,359,0,2726:-199.905,-54.7632,-303.91,-195.023,-289.997,-457.115,-224.589,-319.564,-459.824,-489.39,0,-94.974,-235.236,-264.802,-244.332 0|0:118:59,7,3,8,40:59:2308:7,3,8,40:273,116,320,1581:-112.329,-107.651,-295.243,-120.563,-287.823,-309.359,-103.729,-270.99,-283.902,-291.021,0,-167.269,-180.181,-163.348,-177.667 0|0:109:23,6,19,8,50:23:895:6,19,8,50:238,748,302,1998:-157.649,-144.981,-216.483,-103.039,-156.756,-170.629,-139.828,-193.544,-151.603,-210.729,0,-53.7191,-11.7746,-48.5675,-58.2612 0|0:55:33,4,1,0,16:33:1295:4,1,0,16:158,39,0,631:-41.9726,-38.9046,-143.032,-48.7009,-141.031,-153.732,-51.9066,-144.236,-154.033,-157.239,0,-92.3277,-102.124,-105.33,-100.514 dDocent_Contig_4402 18 . G A 1032.48 . AB=0.521739;ABP=3.29354;AC=3;AF=0.375;AN=8;AO=36;CIGAR=1X;DP=113;DPB=113;DPRA=0.522727;EPP=81.1833;EPPR=170.214;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1425;QR=3029;RO=77;RPL=0;RPP=81.1833;RPPR=170.214;RPR=36;RUN=1;SAF=36;SAP=81.1833;SAR=0;SRF=77;SRP=170.214;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:51:20,31:20:776:31:1224:-95.0786,0,-54.7954 0/0:44:44,0:44:1742:0:0:0,-13.2453,-156.996 0/1:11:7,4:7:284:4:160:-11.4725,0,-22.6227 0/1:7:6,1:6:227:1:41:-1.98736,0,-18.6808 dDocent_Contig_4403 16 . T C 429.201 . AB=0.197183;ABP=116.11;AC=4;AF=0.5;AN=8;AO=28;CIGAR=1X3M1X3M2X;DP=142;DPB=142;DPRA=0;EPP=63.8115;EPPR=244.044;GTI=0;LEN=1;MEANALT=1.75;MQM=39.8571;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.846847;PAO=0;PQA=0;PQR=0;PRO=0;QA=1112;QR=4399;RO=111;RPL=0;RPP=63.8115;RPPR=244.044;RPR=28;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=111;SRP=244.044;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:64:52,9:52:2059:9:360:-11.2971,0,-166.775 0|1:41:35,6:35:1403:6:239:-8.42109,0,-114.188 0|1:18:14,4:14:552:4:156:-5.44084,0,-44.6062 0|1:19:10,9:10:385:9:357:-25.159,0,-29.2831 dDocent_Contig_4404 114 . G T 49.0642 . AB=0.285714;ABP=8.59409;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=68;DPB=68;DPRA=0.777778;EPP=11.6962;EPPR=141.985;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=117;QR=2032;RO=64;RPL=0;RPP=11.6962;RPPR=141.985;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=141.985;SRR=64;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:33:33,0:33:1043:0:0:0,-9.93399,-94.161 0/1:14:10,4:10:307:4:117:-6.60538,0,-23.7151 0/0:12:12,0:12:384:0:0:0,-3.61236,-34.8688 0/0:9:9,0:9:298:0:0:0,-2.70927,-27.1427 dDocent_Contig_4405 28 . C T 16532.5 . AB=0.525665;ABP=9.02932;AC=4;AF=0.5;AN=8;AO=553;CIGAR=1X;DP=1052;DPB=1052;DPRA=0;EPP=1203.83;EPPR=1086.58;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=21978;QR=20009;RO=499;RPL=0;RPP=1203.83;RPPR=1086.58;RPR=553;RUN=1;SAF=553;SAP=1203.83;SAR=0;SRF=499;SRP=1086.58;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:323:152,171:152:6081:171:6846:-518.577,0,-449.827 0/1:290:133,157:133:5319:157:6168:-467.593,0,-391.252 0/1:255:110,145:110:4432:145:5778:-443.057,0,-322.044 0/1:184:104,80:104:4177:80:3186:-231.424,0,-320.494 dDocent_Contig_4406 17 . A G 10642.6 . AB=0.776765;ABP=295.091;AC=4;AF=0.5;AN=8;AO=341;CIGAR=1X1M1X;DP=439;DPB=439;DPRA=0;EPP=743.482;EPPR=209.3;GTI=0;LEN=1;MEANALT=1.75;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=2.77556e-17;PAIRED=0.997067;PAIREDR=0.947368;PAO=0;PQA=0;PQR=0;PRO=0;QA=13352;QR=3708;RO=95;RPL=0;RPP=743.482;RPPR=209.3;RPR=341;RUN=1;SAF=341;SAP=743.482;SAR=0;SRF=95;SRP=209.3;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:156:43,112:43:1680:112:4382:-347.341,0,-104.412 0|1:102:32,70:32:1246:70:2717:-213.975,0,-81.7167 0|1:134:16,116:16:624:116:4546:-369.083,0,-16.4658 0|1:47:4,43:4:158:43:1707:-139.712,0,-0.45224 dDocent_Contig_4407 70 . C T 542.558 . AB=0.257426;ABP=54.6311;AC=1;AF=0.125;AN=8;AO=29;CIGAR=1X;DP=325;DPB=325;DPRA=0.993865;EPP=65.983;EPPR=645.766;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.959459;PAO=0;PQA=0;PQR=0;PRO=0;QA=1065;QR=10664;RO=296;RPL=29;RPP=65.983;RPPR=645.766;RPR=0;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=296;SRP=645.766;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:101:101,0:101:3671:0:0:0,-30.404,-330.561 0/1:101:75,26:75:2686:26:956:-55.9548,0,-211.567 0/0:62:62,0:62:2233:0:0:0,-18.6639,-201.223 0/0:61:58,3:58:2074:3:109:0,-8.19483,-176.754 dDocent_Contig_4408 61 . G C 9596.04 . AB=0.808333;ABP=201.193;AC=5;AF=0.625;AN=8;AO=301;CIGAR=1X;DP=347;DPB=347;DPRA=0;EPP=656.623;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=11518;QR=1687;RO=46;RPL=301;RPP=656.623;RPPR=102.898;RPR=0;RUN=1;SAF=301;SAP=656.623;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:107:0,107:0:0:107:4111:-370.049,-32.2102,0 0/1:63:8,55:8:287:55:2100:-170.255,0,-7.2054 0/1:106:27,79:27:997:79:3020:-240.034,0,-58.1261 0/1:71:11,60:11:403:60:2287:-184.665,0,-15.2398 dDocent_Contig_4409 16 . T A 5698.1 . AB=0.0686016;ABP=615.658;AC=4;AF=0.5;AN=8;AO=26;CIGAR=3X;DP=379;DPB=379;DPRA=0;EPP=59.4686;EPPR=348.274;GTI=0;LEN=1;MEANALT=2.25;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1019;QR=6318;RO=159;RPL=0;RPP=59.4686;RPPR=348.274;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=159;SRP=348.274;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:131:62,68,1:62:2446:68,1:2697,40:-203.331,0,-180.757,-218.7,-197.932,-419.63 0|1:143:40,81,21:40:1592:81,21:3212,820:-252.347,0,-106.701,-196.986,-63.6838,-321.745 0|1:57:31,24,2:31:1242:24,2:931,79:-67.1451,0,-95.1024,-69.9755,-95.8265,-171.702 0|1:48:26,20,2:26:1038:20,2:759,80:-54.3855,0,-79.4681,-55.6203,-78.8985,-140.519 dDocent_Contig_4410 60 . T C 1685.36 . AB=0.25;ABP=161.528;AC=4;AF=0.5;AN=8;AO=73;CIGAR=1X;DP=292;DPB=292;DPRA=0;EPP=161.528;EPPR=478.563;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=0.986301;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2917;QR=8663;RO=219;RPL=73;RPP=161.528;RPPR=478.563;RPR=0;RUN=1;SAF=73;SAP=161.528;SAR=0;SRF=219;SRP=478.563;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:114:93,21:93:3664:21:837:-41.3276,0,-295.47 0/1:62:49,13:49:1945:13:520:-28.4831,0,-156.59 0/1:67:34,33:34:1359:33:1320:-98.8986,0,-102.404 0/1:49:43,6:43:1695:6:240:-7.22518,0,-138.032 dDocent_Contig_4411 209 . N G 1121.94 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=32;CIGAR=1X;DP=32;DPB=32;DPRA=0;EPP=72.4974;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=0.9375;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1224;QR=0;RO=0;RPL=32;RPP=72.4974;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=72.4974;SAR=32;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:6:0,6:0:0:6:230:-21.0625,-1.80618,0 1/1:10:0,10:0:0:10:370:-33.6437,-3.0103,0 1/1:11:0,11:0:0:11:425:-38.5978,-3.31133,0 1/1:5:0,5:0:0:5:199:-18.2881,-1.50515,0 dDocent_Contig_4412 10 . C T 662.551 . AB=0.22449;ABP=99.9289;AC=4;AF=0.5;AN=8;AO=33;CIGAR=1X;DP=147;DPB=147;DPRA=0;EPP=74.6689;EPPR=248.387;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=58.6814;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1295;QR=4502;RO=113;RPL=0;RPP=74.6689;RPPR=248.387;RPR=33;RUN=1;SAF=33;SAP=74.6689;SAR=0;SRF=113;SRP=248.387;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:70:59,11:59:2366:11:430:-17.9828,0,-184.721 0/1:34:23,11:23:917:11:435:-29.2699,0,-72.5973 0/1:31:22,8:22:869:8:309:-18.7325,0,-69.0709 0/1:12:9,3:9:350:3:121:-7.66784,0,-28.2439 dDocent_Contig_4413 16 . T C 4031.61 . AB=0.603687;ABP=23.274;AC=4;AF=0.5;AN=8;AO=131;CIGAR=1X1M;DP=217;DPB=217;DPRA=0;EPP=287.473;EPPR=172.385;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.992366;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5267;QR=3001;RO=78;RPL=0;RPP=287.473;RPPR=172.385;RPR=131;RUN=1;SAF=131;SAP=287.473;SAR=0;SRF=78;SRP=172.385;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:66:18,1,47:18:681:1,47:40,1878:-149.252,-151.376,-206.886,0,-52.5009,-41.6487 0|1:40:14,3,23:14:548:3,23:118,937:-73.097,-67.6065,-111.755,0,-35.349,-38.1321 0|1:72:30,1,41:30:1149:1,41:39,1650:-126.962,-132.787,-226.761,0,-91.07,-81.9339 0|1:39:16,3,20:16:623:3,20:123,802:-61.2475,-55.9106,-106.204,0,-41.0288,-45.1637 dDocent_Contig_4414 9 . G A 617.389 . AB=0.290323;ABP=38.5244;AC=3;AF=0.375;AN=8;AO=27;CIGAR=1X;DP=141;DPB=141;DPRA=0.645833;EPP=61.6401;EPPR=250.558;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.921053;PAO=0;PQA=0;PQR=0;PRO=0;QA=1045;QR=4310;RO=114;RPL=0;RPP=61.6401;RPPR=250.558;RPR=27;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=114;SRP=250.558;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:48:48,0:48:1797:0:0:0,-14.4494,-161.977 0/1:35:21,14:21:790:14:539:-38.3183,0,-60.8847 0/1:39:33,6:33:1264:6:234:-9.69093,0,-102.307 0/1:19:12,7:12:459:7:272:-19.1277,0,-35.9399 dDocent_Contig_4415 16 . T A 9720.42 . AB=0.7543;ABP=231.623;AC=4;AF=0.5;AN=8;AO=307;CIGAR=4M1X2M;DP=407;DPB=406.429;DPRA=0;EPP=669.652;EPPR=209.3;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=12228;QR=3754;RO=95;RPL=0;RPP=669.652;RPPR=209.3;RPR=307;RUN=1;SAF=307;SAP=669.652;SAR=0;SRF=95;SRP=209.3;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:175:21,0,154:21:835:0,154:0,6116:-497.522,-503.843,-572.593,0,-69.1468,-22.7882 0|1:93:9,0,84:9:356:0,84:0,3396:-277.675,-280.384,-309.682,0,-29.6936,-4.4071 0|1:81:52,0,29:52:2062:0,29:0,1146:-79.0363,-94.6899,-264.424,0,-170.13,-161.4 0|1:58:13,4,40:13:501:4,40:145,1570:-125.206,-117.287,-157.213,0,-29.3118,-29.1009 dDocent_Contig_4416 15 . T C 18115.8 . AB=0.598772;ABP=85.7996;AC=4;AF=0.5;AN=8;AO=585;CIGAR=1X;DP=977;DPB=977;DPRA=0;EPP=1273.32;EPPR=854.227;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=39.9209;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=23489;QR=15681;RO=392;RPL=0;RPP=1273.32;RPPR=854.227;RPR=585;RUN=1;SAF=585;SAP=1273.32;SAR=0;SRF=392;SRP=854.227;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:306:114,192:114:4532:192:7643:-595.347,0,-208.527 0/1:297:96,201:96:3882:201:8092:-638.393,0,-157.099 0/1:218:103,115:103:4120:115:4631:-351.072,0,-242.802 0/1:156:79,77:79:3147:77:3123:-234.168,0,-196.111 dDocent_Contig_4417 10 . C T 113.866 . AB=0.0990099;ABP=144.07;AC=1;AF=0.125;AN=8;AO=11;CIGAR=1X1M1X;DP=349;DPB=349;DPRA=0.954545;EPP=26.8965;EPPR=680.51;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=407;QR=12148;RO=312;RPL=0;RPP=26.8965;RPPR=680.51;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=312;SRP=680.51;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:101:89,10,2:89:3458:10,2:370,79:-3.45221,0,-281.111,-23.7391,-277.62,-307.281 0|0:88:80,0,6:80:3118:0,6:0,240:0,-24.0824,-280.337,-4.32011,-260.567,-258.761 0|0:93:82,0,11:82:3191:0,11:0,433:-11.3285,-36.0129,-298.232,0,-262.612,-259.301 0|0:67:61,1,5:61:2381:1,5:37,193:0,-15.3384,-210.758,-2.50285,-195.213,-196.734 dDocent_Contig_4418 30 . G T 203.271 . AB=0.164384;ABP=74.4309;AC=1;AF=0.125;AN=8;AO=23;CIGAR=1X;DP=413;DPB=413;DPRA=0;EPP=52.9542;EPPR=849.885;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=925;QR=14964;RO=390;RPL=0;RPP=52.9542;RPPR=849.885;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=390;SRP=849.885;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:105:103,2:103:3897:2:80:0,-24.0166,-343.216 0/0:138:135,3:135:5181:3:121:0,-30.2619,-454.952 0/0:97:91,6:91:3534:6:239:0,-7.31599,-296.25 0/1:73:61,12:61:2352:12:485:-22.026,0,-189.867 dDocent_Contig_4419 25 . G A 8428.71 . AB=0.051217;ABP=3452.81;AC=0;AF=0;AN=8;AO=101;CIGAR=2X;DP=1972;DPB=1972;DPRA=0;EPP=222.329;EPPR=3119.1;GTI=0;LEN=1;MEANALT=3.5;MQM=44.9109;MQMR=57.4033;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.300762;PAO=0;PQA=0;PQR=0;PRO=0;QA=3992;QR=55545;RO=1443;RPL=0;RPP=222.329;RPPR=3136.44;RPR=101;RUN=1;SAF=101;SAP=222.329;SAR=0;SRF=1441;SRP=3119.1;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:778:567,35,158:567:21806:35,158:1372,6328:-350.164,-411.868,-2173.06,0,-1662.76,-1724.18 0|0:591:421,38,121:421:16249:38,121:1504,4877:-274.819,-281.877,-1588.44,0,-1198.34,-1281.6 0|0:388:299,19,64:299:11486:19,64:760,2524:-117.538,-147.064,-1077.64,0,-875.822,-917.038 0|0:215:156,9,47:156:6004:9,47:356,1880:-107.747,-126.28,-613.799,0,-461.813,-476.095 dDocent_Contig_4420 48 . C A 1433.27 . AB=0.194286;ABP=145.074;AC=1;AF=0.125;AN=8;AO=34;CIGAR=1X1M1X;DP=704;DPB=704;DPRA=0;EPP=76.8404;EPPR=1242.92;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1327;QR=22339;RO=571;RPL=0;RPP=76.8404;RPPR=1242.92;RPR=34;RUN=1;SAF=34;SAP=76.8404;SAR=0;SRF=571;SRP=1242.92;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:201:174,0,26:174:6809:0,26:0,1020:-31.4821,-83.8613,-643.67,0,-559.791,-551.965 0|1:175:110,34,31:110:4345:34,31:1327,1192:-75.9688,0,-347.307,-11.2483,-259.708,-359.454 0|0:200:178,0,22:178:6980:0,22:0,880:-19.3037,-72.8871,-646.852,0,-574.363,-567.741 0|0:128:109,0,18:109:4205:0,18:0,692:-23.9705,-56.7827,-402.055,0,-345.258,-339.839 dDocent_Contig_4421 65 . T G 37627 . AB=0.820937;ABP=327.768;AC=7;AF=0.875;AN=8;AO=1290;CIGAR=1X;DP=1388;DPB=1388;DPRA=0;EPP=2804.21;EPPR=209.3;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.608527;PAIREDR=0.631579;PAO=0;PQA=0;PQR=0;PRO=0;QA=44089;QR=3279;RO=95;RPL=1290;RPP=2804.21;RPPR=209.3;RPR=0;RUN=1;SAF=1290;SAP=2804.21;SAR=0;SRF=95;SRP=209.3;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:363:65,298:65:2234:298:10151:-804.329,0,-92.0558 1/1:338:0,338:0:0:338:11584:-1042.53,-101.748,0 1/1:350:0,348:0:0:348:11918:-1072.36,-104.758,0 1/1:337:30,306:30:1045:306:10436:-844.882,-7.13348,0 dDocent_Contig_4422 92 . T C 1913.18 . AB=0.56391;ABP=7.72876;AC=5;AF=0.625;AN=8;AO=75;CIGAR=1X3M;DP=133;DPB=133;DPRA=0;EPP=165.871;EPPR=100.727;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2507;QR=1477;RO=45;RPL=75;RPP=165.871;RPPR=100.727;RPR=0;RUN=1;SAF=75;SAP=165.871;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:58:17,5,0,36:17:560:5,0,36:175,0,1236:-95.239,-86.117,-129.875,-100.357,-131.38,-145.62,0,-31.0081,-45.2514,-34.4143 0|1:31:16,0,0,15:16:512:0,0,15:0,0,513:-37.1633,-41.9798,-83.2193,-41.9798,-83.2193,-83.2193,0,-41.5707,-41.5707,-37.0552 1|1:28:5,0,8,15:5:166:0,8,15:0,272,459:-43.8964,-45.4016,-58.8344,-23.3259,-36.7627,-34.3545,-8.64154,-22.0688,0,-17.5533 0|1:16:7,0,0,9:7:239:0,0,9:0,0,299:-22.417,-24.5242,-43.9239,-24.5242,-43.9239,-43.9239,0,-19.737,-19.737,-17.0277 dDocent_Contig_4423 9 . G A 6113.88 . AB=0.444444;ABP=16.5217;AC=4;AF=0.5;AN=8;AO=224;CIGAR=1X;DP=504;DPB=504;DPRA=0;EPP=489.42;EPPR=611.023;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=8551;QR=10688;RO=280;RPL=0;RPP=489.42;RPPR=611.023;RPR=224;RUN=1;SAF=224;SAP=489.42;SAR=0;SRF=280;SRP=611.023;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:172:101,71:101:3870:71:2711:-192.402,0,-296.624 0/1:171:85,86:85:3246:86:3278:-243.691,0,-240.817 0/1:116:63,53:63:2380:53:2031:-148.106,0,-179.489 0/1:45:31,14:31:1192:14:531:-34.5864,0,-94.0305 dDocent_Contig_4424 46 . G T 9019.39 . AB=0.461201;ABP=11.941;AC=4;AF=0.5;AN=8;AO=315;CIGAR=1X;DP=683;DPB=683;DPRA=0;EPP=687.024;EPPR=802.112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=12384;QR=14594;RO=368;RPL=0;RPP=687.024;RPPR=802.112;RPR=315;RUN=1;SAF=315;SAP=687.024;SAR=0;SRF=368;SRP=802.112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:236:114,122:114:4547:122:4786:-359.627,0,-338.12 0/1:242:136,106:136:5374:106:4162:-301.735,0,-410.677 0/1:131:79,52:79:3135:52:2062:-146.34,0,-242.797 0/1:74:39,35:39:1538:35:1374:-101.634,0,-116.384 dDocent_Contig_4425 19 . C T 703.079 . AB=0.279412;ABP=31.7504;AC=3;AF=0.375;AN=8;AO=19;CIGAR=1X1M2X1M3D1X2M3I2M2X;DP=86;DPB=85.2;DPRA=1.25926;EPP=44.2683;EPPR=109.412;GTI=0;LEN=1;MEANALT=1.66667;MQM=44;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0.979592;PAO=0;PQA=0;PQR=0;PRO=0;QA=748;QR=1923;RO=49;RPL=0;RPP=44.2683;RPPR=109.412;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:37:11,17,8:11:430:17,8:673,316:-45.2163,0,-30.2374,-23.459,-10.2983,-56.4146 0|1:20:10,0,10:10:398:0,10:0,392:-28.4858,-31.4961,-64.2775,0,-33.1698,-30.1595 0|1:11:10,0,1:10:391:0,1:0,40:-0.543142,-3.55344,-35.7048,0,-32.5373,-32.2363 0|0:18:18,0,0:18:704:0,0:0,0:0,-5.41854,-63.6898,-5.41854,-63.6898,-63.6898 dDocent_Contig_4426 14 . A T 7454.46 . AB=0.280488;ABP=414.849;AC=4;AF=0.5;AN=8;AO=276;CIGAR=2M1X2M;DP=984;DPB=1108;DPRA=0;EPP=602.337;EPPR=1080.06;GTI=0;LEN=1;MEANALT=3.5;MQM=59.971;MQMR=59.9859;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=10958;QR=19652;RO=496;RPL=0;RPP=602.337;RPPR=1080.06;RPR=276;RUN=1;SAF=276;SAP=602.337;SAR=0;SRF=496;SRP=1080.06;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:368:200,70,98:200:7941:70,98:2469,3895:-260.48,-137.072,-769.716,0,-470.144,-624.269 0|1:297:133,75,86:133:5263:75,86:2684,3393:-239.122,-78.0382,-488.58,0,-232.03,-407.269 0|1:213:109,40,60:109:4298:40,60:1409,2380:-163.128,-90.0224,-431.584,0,-247.725,-335.588 0|1:106:54,19,32:54:2150:19,32:678,1290:-90.1147,-55.6651,-226.978,0,-126.368,-167.449 dDocent_Contig_4427 73 . G A 3255.05 . AB=0.566372;ABP=11.6578;AC=4;AF=0.5;AN=8;AO=128;CIGAR=2X;DP=226;DPB=226;DPRA=0;EPP=280.959;EPPR=213.643;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=0.976562;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4439;QR=3338;RO=97;RPL=128;RPP=280.959;RPPR=213.643;RPR=0;RUN=1;SAF=128;SAP=280.959;SAR=0;SRF=97;SRP=213.643;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:82:30,51:30:1039:51:1782:-136.175,0,-69.3262 0|1:42:31,11:31:1028:11:393:-23.0677,0,-80.1752 0|1:63:26,37:26:907:37:1257:-94.4602,0,-62.9779 0|1:39:10,29:10:364:29:1007:-79.1999,0,-21.3664 dDocent_Contig_4428 19 . G C 8075.05 . AB=0.548654;ABP=12.9415;AC=4;AF=0.5;AN=8;AO=265;CIGAR=9M1X;DP=483;DPB=486.2;DPRA=0;EPP=578.45;EPPR=415.59;GTI=0;LEN=1;MEANALT=3.5;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.996226;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=10587;QR=7494;RO=190;RPL=0;RPP=578.45;RPPR=415.59;RPR=265;RUN=1;SAF=265;SAP=578.45;SAR=0;SRF=190;SRP=415.59;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:188:79,4,102:79:3107:4,102:152,4115:-315.429,-326.749,-581.109,0,-243.11,-224.867 0|1:155:84,10,56:84:3326:10,56:362,2219:-157.393,-153.138,-423.876,0,-244.249,-256.934 0|1:96:19,2,73:19:747:2,73:78,2901:-233.089,-232.398,-293.237,0,-55.0256,-39.4616 0|1:44:8,0,34:8:314:0,34:0,1352:-108.991,-111.399,-137.223,0,-25.8984,-15.6633 dDocent_Contig_4429 11 . A T 118.455 . AB=0.145455;ABP=63.0614;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=186;DPB=186;DPRA=1.25954;EPP=20.3821;EPPR=389.532;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=327;QR=7160;RO=178;RPL=0;RPP=20.3821;RPPR=389.532;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=178;SRP=389.532;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:55:47,8:47:1877:8:327:-13.2435,0,-152.57 0/0:65:65,0:65:2625:0:0:0,-19.5669,-236.368 0/0:47:47,0:47:1902:0:0:0,-14.1484,-171.377 0/0:19:19,0:19:756:0:0:0,-5.71957,-68.3566 dDocent_Contig_4431 12 . C T 340.919 . AB=0.123288;ABP=362.939;AC=1;AF=0.125;AN=8;AO=66;CIGAR=1X;DP=1049;DPB=1049;DPRA=0.911032;EPP=146.327;EPPR=2135.4;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.8819;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.986762;PAO=0;PQA=0;PQR=0;PRO=0;QA=2527;QR=38990;RO=982;RPL=0;RPP=146.327;RPPR=2135.4;RPR=66;RUN=1;SAF=66;SAP=146.327;SAR=0;SRF=982;SRP=2135.4;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:292:256,36:256:10162:36:1368:-35.4898,0,-825.452 0/0:281:280,0:280:11110:0:0:0,-84.2884,-998.753 0/0:304:282,22:282:11278:22:857:0,-14.0759,-936.795 0/0:172:164,8:164:6440:8:302:0,-24.2426,-551.814 dDocent_Contig_4433 71 . G T 106.057 . AB=0.156863;ABP=55.1682;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=98;DPB=98;DPRA=3.25532;EPP=20.3821;EPPR=198.443;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.966667;PAO=0;PQA=0;PQR=0;PRO=0;QA=300;QR=3403;RO=90;RPL=8;RPP=20.3821;RPPR=198.443;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=90;SRP=198.443;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:51:43,8:43:1658:8:300:-12.0036,0,-134.129 0/0:14:14,0:14:509:0:0:0,-4.21442,-46.1448 0/0:15:15,0:15:571:0:0:0,-4.51545,-51.7302 0/0:18:18,0:18:665:0:0:0,-5.41854,-60.1766 dDocent_Contig_4434 117 . G T 173 . AB=0.428571;ABP=3.94093;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X;DP=76;DPB=76;DPRA=1.14545;EPP=22.5536;EPPR=148.499;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=278;QR=2237;RO=67;RPL=0;RPP=22.5536;RPPR=148.499;RPR=9;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=148.499;SRR=67;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:9:9,0:9:312:0:0:0,-2.70927,-28.4162 0/1:21:12,9:12:415:9:278:-18.999,0,-31.3603 0/0:39:39,0:39:1268:0:0:0,-11.7402,-114.405 0/0:7:7,0:7:242:0:0:0,-2.10721,-22.1177 dDocent_Contig_4435 12 . G A 5701.46 . AB=0.464037;ABP=7.85203;AC=4;AF=0.5;AN=8;AO=200;CIGAR=1X;DP=431;DPB=431;DPRA=0;EPP=437.305;EPPR=504.62;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7850;QR=9239;RO=231;RPL=0;RPP=437.305;RPPR=504.62;RPR=200;RUN=1;SAF=200;SAP=437.305;SAR=0;SRF=231;SRP=504.62;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:215:119,96:119:4754:96:3778:-275.311,0,-363.055 0/1:82:39,43:39:1578:43:1690:-127.643,0,-117.566 0/1:42:21,21:21:853:21:829:-62.2805,0,-64.4375 0/1:92:52,40:52:2054:40:1553:-112.309,0,-157.358 dDocent_Contig_4436 14 . A T 42.5819 . AB=0.101266;ABP=112.106;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=230;DPB=230;DPRA=1.56954;EPP=20.3821;EPPR=476.43;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.981982;PAO=0;PQA=0;PQR=0;PRO=0;QA=323;QR=8924;RO=222;RPL=0;RPP=20.3821;RPPR=485.077;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=221;SRP=476.43;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:79:71,8:71:2848:8:323:-5.6561,0,-232.634 0/0:73:73,0:73:2945:0:0:0,-21.9752,-265.131 0/0:38:38,0:38:1529:0:0:0,-11.4391,-137.848 0/0:40:40,0:40:1602:0:0:0,-12.0412,-144.41 dDocent_Contig_4437 17 . C T 9663.55 . AB=0.770975;ABP=284.273;AC=4;AF=0.5;AN=8;AO=340;CIGAR=1X3M1X;DP=441;DPB=441;DPRA=0;EPP=724.041;EPPR=209.388;GTI=0;LEN=1;MEANALT=1.5;MQM=41.4118;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.585294;PAIREDR=0.888889;PAO=0;PQA=0;PQR=0;PRO=0;QA=13332;QR=3857;RO=99;RPL=0;RPP=741.311;RPPR=217.986;RPR=340;RUN=1;SAF=338;SAP=724.041;SAR=2;SRF=98;SRP=209.388;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:104:17,86:17:665:86:3394:-247.915,0,-28.8962 0|1:138:37,101:37:1462:101:3947:-287.198,0,-90.2987 0|1:105:25,79:25:968:79:3098:-219.435,0,-55.7309 0|1:94:20,74:20:762:74:2893:-219.206,0,-40.6046 dDocent_Contig_4438 62 . T G 132.189 . AB=0.177778;ABP=43.5927;AC=2;AF=0.25;AN=8;AO=8;CIGAR=1X;DP=71;DPB=71;DPRA=1.73077;EPP=20.3821;EPPR=139.813;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.984127;PAO=0;PQA=0;PQR=0;PRO=0;QA=326;QR=2546;RO=63;RPL=8;RPP=20.3821;RPPR=139.813;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=63;SRP=139.813;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:16,2:16:650:2:82:-2.36114,0,-53.4144 0/0:14:14,0:14:565:0:0:0,-4.21442,-51.1926 0/1:27:21,6:21:853:6:244:-14.2108,0,-68.9522 0/0:12:12,0:12:478:0:0:0,-3.61236,-43.3676 dDocent_Contig_4439 189 . G T 150.649 . AB=0.387097;ABP=6.44263;AC=1;AF=0.125;AN=8;AO=14;CIGAR=1X;DP=105;DPB=105;DPRA=0.962963;EPP=33.4109;EPPR=200.614;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=348;QR=3671;RO=91;RPL=14;RPP=33.4109;RPPR=200.614;RPR=0;RUN=1;SAF=0;SAP=33.4109;SAR=14;SRF=0;SRP=200.614;SRR=91;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:19,12:19:768:12:284:-16.4628,0,-60.1087 0/0:27:27,0:27:1090:0:0:0,-8.12781,-98.3865 0/0:32:31,1:31:1246:1:32:0,-6.43365,-109.204 0/0:15:14,1:14:567:1:32:0,-1.31614,-48.1732 dDocent_Contig_4440 53 . C T 7524.04 . AB=0.816143;ABP=196.602;AC=5;AF=0.625;AN=8;AO=236;CIGAR=1X;DP=281;DPB=281;DPRA=0;EPP=515.478;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=9328;QR=1715;RO=44;RPL=236;RPP=515.478;RPPR=98.5551;RPR=0;RUN=1;SAF=236;SAP=515.478;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:75:9,66:9:361:66:2635:-214.701,0,-10.2768 0/1:94:22,72:22:839:72:2815:-225.163,0,-47.5171 1/1:58:4,54:4:164:54:2135:-177.181,-2.30984,0 0/1:54:9,44:9:351:44:1743:-140.757,0,-15.6116 dDocent_Contig_4442 53 . C T 11822.9 . AB=0.854664;ABP=506.684;AC=4;AF=0.5;AN=8;AO=394;CIGAR=1X;DP=461;DPB=461;DPRA=0;EPP=858.57;EPPR=146.327;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=14757;QR=2604;RO=66;RPL=394;RPP=858.57;RPPR=146.327;RPR=0;RUN=1;SAF=394;SAP=858.57;SAR=0;SRF=66;SRP=146.327;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:147:23,123:23:898:123:4576:-367.542,0,-36.7826 0/1:203:25,178:25:997:178:6666:-538.724,0,-28.9167 0/1:58:7,51:7:276:51:1950:-158.268,0,-7.74749 0/1:53:11,42:11:433:42:1565:-125.15,0,-23.3673 dDocent_Contig_4443 1 . N G 110.959 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=119;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:119:-11.0954,-0.90309,0 ./.:.:.:.:.:.:.:. dDocent_Contig_4444 129 . G A 74.6415 . AB=0.171429;ABP=35.8306;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=137;DPB=137;DPRA=1.02941;EPP=16.0391;EPPR=287.473;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=215;QR=4583;RO=131;RPL=0;RPP=16.0391;RPPR=287.473;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=287.473;SRR=131;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:33:33,0:33:1173:0:0:0,-9.93399,-105.877 0/1:35:29,6:29:1024:6:215:-9.16312,0,-81.9367 0/0:43:43,0:43:1512:0:0:0,-12.9443,-136.37 0/0:26:26,0:26:874:0:0:0,-7.82678,-78.9651 dDocent_Contig_4445 23 . A C 435.681 . AB=0.127219;ABP=410.99;AC=4;AF=0.5;AN=8;AO=43;CIGAR=1X;DP=338;DPB=338;DPRA=0;EPP=34.5724;EPPR=643.595;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.0465116;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1681;QR=11733;RO=295;RPL=0;RPP=96.3836;RPPR=643.595;RPR=43;RUN=1;SAF=34;SAP=34.5724;SAR=9;SRF=295;SRP=643.595;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:99:84,15:84:3349:15:567:-21.5529,0,-271.649 0/1:102:90,12:90:3545:12:479:-12.754,0,-288.39 0/1:62:53,9:53:2130:9:358:-13.9177,0,-173.213 0/1:75:68,7:68:2709:7:277:-2.72127,0,-221.351 dDocent_Contig_4446 41 . G C 2671.7 . AB=0.281984;ABP=161.131;AC=4;AF=0.5;AN=8;AO=108;CIGAR=1X;DP=383;DPB=383;DPRA=0;EPP=237.529;EPPR=600.165;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4319;QR=10856;RO=275;RPL=0;RPP=237.529;RPPR=600.165;RPR=108;RUN=1;SAF=108;SAP=237.529;SAR=0;SRF=275;SRP=600.165;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:112:76,36:76:2960:36:1441:-96.2237,0,-232.784 0/1:111:97,14:97:3865:14:562:-17.5057,0,-314.441 0/1:106:74,32:74:2909:32:1284:-83.918,0,-230.011 0/1:54:28,26:28:1122:26:1032:-76.9207,0,-85.0108 dDocent_Contig_4448 62 . A C 97.0568 . AB=0.4;ABP=3.87889;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=53;DPB=53;DPRA=0.697674;EPP=11.6962;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.795918;PAO=0;PQA=0;PQR=0;PRO=0;QA=156;QR=1921;RO=49;RPL=4;RPP=11.6962;RPPR=109.412;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:18:18,0:18:709:0:0:0,-5.41854,-64.1363 0/0:16:16,0:16:619:0:0:0,-4.81648,-56.0421 0/0:9:9,0:9:358:0:0:0,-2.70927,-32.5812 0/1:10:6,4:6:235:4:156:-11.4046,0,-18.5099 dDocent_Contig_4449 113 . G A 38.8283 . AB=0.214286;ABP=12.937;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=50;DPB=50;DPRA=1.16667;EPP=9.52472;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=105;QR=1598;RO=47;RPL=0;RPP=9.52472;RPPR=105.07;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=105.07;SRR=47;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:12:12,0:12:409:0:0:0,-3.61236,-37.138 0/1:14:11,3:11:373:3:105:-5.58174,0,-29.6832 0/0:15:15,0:15:507:0:0:0,-4.51545,-45.9524 0/0:9:9,0:9:309:0:0:0,-2.70927,-28.1435 dDocent_Contig_4450 98 . N A 1519.45 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=49;CIGAR=1X;DP=49;DPB=49;DPRA=0;EPP=109.412;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1667;QR=0;RO=0;RPL=49;RPP=109.412;RPPR=0;RPR=0;RUN=1;SAF=49;SAP=109.412;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:14:0,14:0:0:14:467:-42.3493,-4.21442,0 1/1:17:0,17:0:0:17:576:-52.1612,-5.11751,0 1/1:7:0,7:0:0:7:244:-22.3001,-2.10721,0 1/1:11:0,11:0:0:11:380:-34.5328,-3.31133,0 dDocent_Contig_4451 15 . G T 18779.5 . AB=0.86119;ABP=403.01;AC=6;AF=0.75;AN=8;AO=566;CIGAR=2X1M1X1M1X;DP=621;DPB=621;DPRA=0;EPP=1232.06;EPPR=118.098;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=22290;QR=2092;RO=53;RPL=0;RPP=1232.06;RPPR=118.098;RPR=566;RUN=1;SAF=566;SAP=1232.06;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:208:31,176:31:1221:176:6880:-556.255,0,-47.458 1|1:167:5,162:5:191:162:6413:-559.406,-32.7142,0 0|1:145:17,128:17:680:128:5051:-410.865,0,-17.8833 1|1:101:0,100:0:0:100:3946:-354.819,-30.103,0 dDocent_Contig_4452 30 . G A 10756.1 . AB=0.596965;ABP=51.4382;AC=4;AF=0.5;AN=8;AO=354;CIGAR=1X;DP=593;DPB=593;DPRA=0;EPP=771.712;EPPR=521.992;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.997175;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=14015;QR=9454;RO=239;RPL=0;RPP=771.712;RPPR=521.992;RPR=354;RUN=1;SAF=354;SAP=771.712;SAR=0;SRF=239;SRP=521.992;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:248:118,130:118:4669:130:5193:-392.575,0,-345.49 0/1:142:37,105:37:1449:105:4117:-327.772,0,-87.9177 0/1:111:48,63:48:1925:63:2510:-192.629,0,-140.039 0/1:92:36,56:36:1411:56:2195:-170.033,0,-99.5553 dDocent_Contig_4454 29 . T A 123.805 . AB=0.540541;ABP=3.5385;AC=1;AF=0.125;AN=8;AO=20;CIGAR=1M1I1X1M1X1M1X2M1X;DP=89;DPB=91.2222;DPRA=2.24242;EPP=46.4397;EPPR=115.927;GTI=0;LEN=1;MEANALT=4;MQM=12;MQMR=60;NS=4;NUMALT=2;ODDS=3.46945e-18;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=773;QR=2024;RO=52;RPL=0;RPP=46.4397;RPPR=115.927;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:37:6,20,9:6:237:20,9:773,96:-13.7736,0,-13.591,-11.9067,-16.0575,-28.7591 0|0:19:14,0,5:14:550:0,5:0,84:-0.649216,-4.86364,-50.2891,0,-45.6307,-44.1256 0|0:25:24,0,1:24:935:0,1:0,12:0,-7.22472,-84.3596,-6.61286,-83.8509,-83.5499 0|0:8:8,0,0:8:302:0,0:0,0:0,-2.40824,-27.5352,-2.40824,-27.5352,-27.5352 dDocent_Contig_4455 8 . A T 18383.6 . AB=0.863118;ABP=304.217;AC=6;AF=0.75;AN=8;AO=588;CIGAR=1X;DP=649;DPB=649;DPRA=0;EPP=1279.84;EPPR=135.47;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.998299;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=22310;QR=2329;RO=61;RPL=0;RPP=1279.84;RPPR=135.47;RPR=588;RUN=1;SAF=588;SAP=1279.84;SAR=0;SRF=61;SRP=135.47;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:272:19,253:19:729:253:9546:-792.919,-15.9396,0 0/1:192:19,173:19:726:173:6596:-535.749,0,-7.8728 1/1:114:6,108:6:229:108:4114:-349.369,-13.3417,0 0/1:71:17,54:17:645:54:2054:-163.723,0,-37.0129 dDocent_Contig_4458 125 . A G 2357.85 . AB=0.64;ABP=20.0346;AC=5;AF=0.625;AN=8;AO=89;CIGAR=1X;DP=125;DPB=125;DPRA=0;EPP=196.271;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2998;QR=1212;RO=35;RPL=0;RPP=196.271;RPPR=79.0118;RPR=89;RUN=1;SAF=0;SAP=196.271;SAR=89;SRF=0;SRP=79.0118;SRR=35;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:11,13:11:384:13:426:-31.4283,0,-27.6709 0/1:42:19,22:19:659:22:751:-55.4841,0,-47.2087 1/1:25:0,25:0:0:25:829:-74.9147,-7.52575,0 0/1:34:5,29:5:169:29:992:-79.3558,0,-5.30762 dDocent_Contig_4459 15 . A C 823.88 . AB=0.190476;ABP=195.237;AC=3;AF=0.375;AN=8;AO=51;CIGAR=1X;DP=336;DPB=336;DPRA=0;EPP=113.755;EPPR=619.708;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2016;QR=11368;RO=284;RPL=0;RPP=113.755;RPPR=619.708;RPR=51;RUN=1;SAF=51;SAP=113.755;SAR=0;SRF=284;SRP=619.708;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:83:75,8:75:3015:8:315:-3.72787,0,-246.436 0/0:105:98,7:98:3903:7:278:0,-6.2194,-325.884 0/1:83:59,23:59:2379:23:901:-56.2982,0,-189.163 0/1:65:52,13:52:2071:13:522:-27.7579,0,-167.01 dDocent_Contig_4460 35 . G A 9864.27 . AB=0.641879;ABP=92.3551;AC=4;AF=0.5;AN=8;AO=328;CIGAR=1M1I3M1X;DP=511;DPB=577;DPRA=0;EPP=715.253;EPPR=383.018;GTI=0;LEN=1;MEANALT=2;MQM=59.9116;MQMR=60;NS=4;NUMALT=1;ODDS=2.77556e-17;PAIRED=0.993902;PAIREDR=0.965714;PAO=0;PQA=0;PQR=0;PRO=0;QA=12731;QR=6705;RO=175;RPL=0;RPP=715.253;RPPR=383.018;RPR=328;RUN=1;SAF=328;SAP=715.253;SAR=0;SRF=175;SRP=383.018;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:158:64,89:64:2496:89:3413:-260.861,0,-178.408 0|1:141:51,88:51:1940:88:3459:-269.309,0,-132.743 0|1:93:28,64:28:1069:64:2477:-194.999,0,-68.4023 0|1:119:32,87:32:1200:87:3382:-268.656,0,-72.4623 dDocent_Contig_4461 87 . C G 103.817 . AB=0.0869565;ABP=37.093;AC=1;AF=0.125;AN=8;AO=2;CIGAR=7M1X15M;DP=113;DPB=114.739;DPRA=0.793103;EPP=7.35324;EPPR=198.443;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=78;QR=3435;RO=90;RPL=0;RPP=7.35324;RPPR=198.443;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=198.443;SRR=90;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:29:28,0,1,0:28:1069:0,1,0:0,35,0:0,-8.42884,-96.1643,-5.23124,-93.3177,-93.0167,-8.42884,-96.1643,-93.3177,-96.1643 0|0:33:26,2,5,0:26:1000:2,5,0:74,168,0:-5.75868,-7.52174,-89.061,0,-76.0612,-80.609,-13.5855,-89.663,-82.1141,-95.7166 0|0:28:20,1,5,0:20:756:1,5,0:37,172,0:-7.95972,-10.9487,-72.6449,0,-58.9815,-60.5033,-13.9803,-72.9459,-62.0084,-75.973 0|1:23:16,2,2,2:16:610:2,2,2:74,66,78:-1.60324,-0.365673,-49.8141,-1.09944,-45.0851,-50.5357,0,-44.0032,-44.7252,-49.4545 dDocent_Contig_4462 121 . T C 38.3151 . AB=0.133333;ABP=55.5599;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X4M;DP=85;DPB=85;DPRA=1.24074;EPP=18.2106;EPPR=163.699;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=204;QR=2541;RO=74;RPL=0;RPP=18.2106;RPPR=163.699;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=163.699;SRR=74;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:22:19,2,0,1:19:642:2,0,1:70,0,36:0,-0.0307401,-51.4488,-5.71957,-52.0508,-57.7473,-2.77883,-49.1123,-54.8089,-54.5079 0|1:31:26,0,0,5:26:900:0,0,5:0,0,161:-5.47459,-13.3014,-86.4652,-13.3014,-86.4652,-86.4652,0,-73.4896,-73.4896,-71.9845 0|0:18:18,0,0,0:18:620:0,0,0:0,0,0:0,-5.41854,-56.1245,-5.41854,-56.1245,-56.1245,-5.41854,-56.1245,-56.1245,-56.1245 0|0:14:11,0,2,1:11:379:0,2,1:0,61,7:-1.73184,-5.04317,-35.9221,0,-31.0379,-30.4358,-4.79251,-35.6123,-30.7318,-35.3112 dDocent_Contig_4463 13 . A C 5210.96 . AB=0.0931174;ABP=713.372;AC=0;AF=0;AN=8;AO=46;CIGAR=1X1M1X1M;DP=494;DPB=494;DPRA=0;EPP=102.898;EPPR=454.677;GTI=0;LEN=1;MEANALT=4.25;MQM=59.8696;MQMR=58.7692;NS=4;NUMALT=4;ODDS=0;PAIRED=0.913043;PAIREDR=0.971154;PAO=0;PQA=0;PQR=0;PRO=0;QA=1777;QR=8046;RO=208;RPL=0;RPP=102.898;RPPR=454.677;RPR=46;RUN=1;SAF=46;SAP=102.898;SAR=0;SRF=208;SRP=454.677;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:122:60,8,3,15,36:60:2335:8,3,15,36:316,121,568,1424:-99.131,-91.1886,-280.663,-107.218,-273.096,-298.197,-70.6398,-236.516,-252.545,-258.004,0,-165.881,-181.911,-145.33,-181.048 0|0:173:93,12,9,7,52:93:3586:12,9,7,52:471,356,282,2082:-143.523,-132.784,-423.571,-142.224,-397.889,-433.915,-148.275,-403.94,-413.381,-440.568,0,-255.664,-265.105,-271.156,-278.746 0|0:129:39,13,10,9,57:39:1509:13,10,9,57:488,401,361,2244:-172.564,-144.34,-258.841,-151.265,-229.714,-266.67,-154.576,-233.026,-239.952,-270.283,0,-78.4459,-85.37,-88.6816,-101.253 0|0:70:16,13,2,3,36:16:616:13,2,3,36:502,69,117,1434:-113.276,-76.8738,-123.534,-112.491,-121.846,-162.463,-108.475,-117.83,-153.448,-158.146,0,-9.35543,-44.9771,-40.9597,-39.7404 dDocent_Contig_4464 187 . G A 5908.37 . AB=0.633621;ABP=38.9894;AC=5;AF=0.625;AN=8;AO=189;CIGAR=1X;DP=274;DPB=274;DPRA=0;EPP=413.419;EPPR=187.585;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7391;QR=3409;RO=85;RPL=189;RPP=413.419;RPPR=187.585;RPR=0;RUN=1;SAF=0;SAP=413.419;SAR=189;SRF=0;SRP=187.585;SRR=85;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:145:59,86:59:2360:86:3343:-257.307,0,-168.894 1/1:42:0,42:0:0:42:1658:-149.458,-12.6433,0 0/1:46:10,36:10:402:36:1421:-114.301,0,-22.6901 0/1:41:16,25:16:647:25:969:-75.1686,0,-46.2217 dDocent_Contig_4465 10 . G A 1472.38 . AB=0.579545;ABP=7.84676;AC=4;AF=0.5;AN=8;AO=51;CIGAR=1X;DP=88;DPB=88;DPRA=0;EPP=113.755;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1.25;MQM=58.8627;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=0.921569;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2005;QR=1444;RO=36;RPL=0;RPP=113.755;RPPR=81.1833;RPR=51;RUN=1;SAF=51;SAP=113.755;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:19,6:19:762:6:244:-14.8131,0,-61.3745 0/1:22:8,13:8:322:13:497:-37.7723,0,-22.6258 0/1:23:5,18:5:201:18:708:-57.0872,0,-11.5468 0/1:18:4,14:4:159:14:556:-44.9633,0,-9.27341 dDocent_Contig_4466 15 . G A 1154.86 . AB=0.24878;ABP=115.387;AC=3;AF=0.375;AN=8;AO=53;CIGAR=2X;DP=248;DPB=248;DPRA=0;EPP=118.098;EPPR=424.276;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2097;QR=7637;RO=194;RPL=0;RPP=118.098;RPPR=424.276;RPR=53;RUN=1;SAF=53;SAP=118.098;SAR=0;SRF=194;SRP=424.276;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:71:53,18:53:2087:18:703:-42.2252,0,-166.646 0|1:92:70,21:70:2765:21:837:-47.841,0,-221.168 0|0:43:41,2:41:1617:2:78:0,-5.54099,-138.361 0|1:42:30,12:30:1168:12:479:-30.8176,0,-92.7595 dDocent_Contig_4468 25 . T C 2704.91 . AB=0.606667;ABP=17.8342;AC=4;AF=0.5;AN=8;AO=91;CIGAR=1X3M1X;DP=150;DPB=150;DPRA=0;EPP=200.614;EPPR=128.956;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3566;QR=2285;RO=58;RPL=0;RPP=200.614;RPPR=128.956;RPR=91;RUN=1;SAF=91;SAP=200.614;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:74:40,33:40:1572:33:1284:-93.4634,0,-119.355 0|1:22:2,20:2:81:20:787:-64.5274,0,-1.06307 0|1:43:13,30:13:512:30:1178:-93.3632,0,-33.48 0|1:11:3,8:3:120:8:317:-25.5858,0,-7.87657 dDocent_Contig_4469 16 . G A 553.009 . AB=0.155556;ABP=234.875;AC=1;AF=0.125;AN=8;AO=39;CIGAR=1X;DP=640;DPB=640;DPRA=2.16832;EPP=87.6977;EPPR=1308.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.996672;PAO=0;PQA=0;PQR=0;PRO=0;QA=1542;QR=23951;RO=601;RPL=0;RPP=87.6977;RPPR=1308.07;RPR=39;RUN=1;SAF=39;SAP=87.6977;SAR=0;SRF=601;SRP=1308.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:213:209,4:209:8304:4:159:0,-49.4274,-732.212 0/1:225:190,35:190:7575:35:1383:-56.9998,0,-613.622 0/0:99:99,0:99:3960:0:0:0,-29.802,-356.394 0/0:103:103,0:103:4112:0:0:0,-31.0061,-370.055 dDocent_Contig_4471 13 . A T 2453.91 . AB=0.480226;ABP=3.61144;AC=6;AF=0.75;AN=8;AO=85;CIGAR=1X3M;DP=177;DPB=177;DPRA=0;EPP=187.585;EPPR=65.983;GTI=0;LEN=1;MEANALT=2.25;MQM=34.1647;MQMR=59.5862;NS=4;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0.827586;PAO=0;PQA=0;PQR=0;PRO=0;QA=2899;QR=1146;RO=29;RPL=0;RPP=187.585;RPPR=65.983;RPR=85;RUN=1;SAF=85;SAP=187.585;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:47:2,23,22:2:73:23,22:914,758:-97.0149,-49.791,-48.8347,-41.7884,0,-41.1371 1|1:46:7,14,24:7:272:14,24:567,808:-64.0278,-36.5834,-54.7335,-7.11494,0,-22.2752 0|1:52:13,16,23:13:521:16,23:636,789:-54.0128,-24.2823,-62.3679,0,-9.34069,-36.0066 0|1:32:7,9,16:7:280:9,16:354,544:-37.7332,-21.3172,-41.6997,0,-4.66143,-18.3081 dDocent_Contig_4472 9 . G A 10519.4 . AB=0.623239;ABP=77.9414;AC=4;AF=0.5;AN=8;AO=354;CIGAR=2X;DP=568;DPB=568;DPRA=0;EPP=771.712;EPPR=404.733;GTI=0;LEN=1;MEANALT=1.75;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.99435;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=13581;QR=7198;RO=185;RPL=0;RPP=771.712;RPPR=404.733;RPR=354;RUN=1;SAF=354;SAP=771.712;SAR=0;SRF=185;SRP=404.733;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:194:73,26,95:73:2838:26,95:1014,3642:-276.922,-215.545,-440.93,0,-149.857,-204.61 0|1:229:55,0,173:55:2146:0,173:0,6659:-530.148,-546.705,-723.11,0,-176.414,-124.336 0|1:78:35,0,43:35:1360:0,43:0,1630:-123.479,-134.015,-245.774,0,-112.144,-99.1996 0|1:67:22,2,43:22:854:2,43:79,1650:-128.79,-128.912,-198.479,0,-63.66,-57.2172 dDocent_Contig_4473 31 . A G 8277.88 . AB=0.53211;ABP=5.9388;AC=5;AF=0.625;AN=8;AO=267;CIGAR=1X;DP=428;DPB=428;DPRA=0;EPP=582.793;EPPR=352.617;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=10663;QR=6446;RO=161;RPL=0;RPP=582.793;RPPR=352.617;RPR=267;RUN=1;SAF=267;SAP=582.793;SAR=0;SRF=161;SRP=352.617;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:158:79,79:79:3169:79:3166:-237.446,0,-237.711 1/1:101:8,93:8:313:93:3718:-306.099,-1.87135,0 0/1:72:34,38:34:1372:38:1527:-115.997,0,-102.061 0/1:97:40,57:40:1592:57:2252:-173.643,0,-114.317 dDocent_Contig_4474 18 . C A 3783.38 . AB=0.247692;ABP=362.419;AC=4;AF=0.5;AN=8;AO=161;CIGAR=1X;DP=650;DPB=650;DPRA=0;EPP=352.617;EPPR=1064.86;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.98773;PAO=0;PQA=0;PQR=0;PRO=0;QA=6450;QR=19507;RO=489;RPL=0;RPP=352.617;RPPR=1064.86;RPR=161;RUN=1;SAF=161;SAP=352.617;SAR=0;SRF=489;SRP=1064.86;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:203:151,52:151:6053:52:2071:-125.464,0,-483.42 0/1:193:125,68:125:5008:68:2747:-189.236,0,-392.487 0/1:139:123,16:123:4892:16:642:-16.271,0,-398.33 0/1:115:90,25:90:3554:25:990:-54.7647,0,-285.266 dDocent_Contig_4475 107 . N A 26704.8 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=864;CIGAR=1X;DP=865;DPB=865;DPRA=0;EPP=1879.16;EPPR=0;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=29665;QR=0;RO=0;RPL=0;RPP=1879.16;RPPR=0;RPR=864;RUN=1;SAF=0;SAP=1879.16;SAR=864;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:300:0,300:0:0:300:10332:-929.848,-90.309,0 1/1:202:0,201:0:0:201:6873:-618.384,-60.507,0 1/1:177:0,177:0:0:177:6144:-553.079,-53.2823,0 1/1:186:0,186:0:0:186:6316:-568.566,-55.9916,0 dDocent_Contig_4477 213 . T C 80.7651 . AB=0.230769;ABP=11.1951;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1M1X1M2I3X;DP=34;DPB=36.6667;DPRA=1.73333;EPP=9.52472;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=109;QR=1073;RO=29;RPL=3;RPP=9.52472;RPPR=65.983;RPR=0;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=65.983;SRR=29;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:10:10,0,0:10:370:0,0:0,0:0,-3.0103,-33.6502,-3.0103,-33.6502,-33.6502 0|1:13:10,3,0:10:367:3,0:109,0:-6.25461,0,-29.4651,-9.26491,-30.3682,-39.2691 0|0:5:5,0,0:5:190:0,0:0,0:0,-1.50515,-17.4665,-1.50515,-17.4665,-17.4665 0|0:6:4,0,2:4:146:0,2:0,74:-5.2197,-6.42382,-18.3493,0,-12.2936,-11.6915 dDocent_Contig_4478 106 . N A 301.285 . AB=0.5;ABP=3.0103;AC=6;AF=1;AN=6;AO=7;CIGAR=2X3M;DP=13;DPB=13;DPRA=0;EPP=18.2106;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQM=40;MQMR=0;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=240;QR=0;RO=0;RPL=0;RPP=18.2106;RPPR=0;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. 1|1:3:0,0,0,2:0:0:0,0,2:0,0,69:-6.0051,-6.0051,-6.0051,-6.0051,-6.0051,-6.0051,-0.60206,-0.60206,-0.60206,0 1|1:5:0,2,0,3:0:0:2,0,3:68,0,103:-13.7455,-8.40349,-7.80143,-13.7455,-8.40349,-13.7455,-5.67309,0,-5.67309,-4.77 1|1:5:0,0,3,2:0:0:0,3,2:0,105,68:-13.8992,-13.8992,-13.8992,-5.66958,-5.66958,-4.76649,-8.56288,-8.56288,0,-7.96082 dDocent_Contig_4479 15 . G A 105.575 . AB=0.163265;ABP=51.2702;AC=2;AF=0.25;AN=8;AO=9;CIGAR=1X;DP=86;DPB=86;DPRA=1.03175;EPP=22.5536;EPPR=165.871;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=348;QR=2610;RO=75;RPL=0;RPP=22.5536;RPPR=165.871;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=75;SRP=165.871;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:35:29,5:29:994:5:192:-7.25937,0,-79.3773 0/0:16:15,1:15:485:1:39:0,-0.919915,-40.0532 0/0:21:20,0:20:736:0:0:0,-6.0206,-66.4234 0/1:14:11,3:11:395:3:117:-6.69596,0,-31.661 dDocent_Contig_4480 21 . A T 7567.23 . AB=0.75;ABP=176.728;AC=4;AF=0.5;AN=8;AO=240;CIGAR=1X;DP=320;DPB=320;DPRA=0;EPP=524.164;EPPR=176.728;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=9554;QR=3146;RO=80;RPL=0;RPP=524.164;RPPR=176.728;RPR=240;RUN=1;SAF=240;SAP=524.164;SAR=0;SRF=80;SRP=176.728;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:128:41,87:41:1614:87:3480:-274.698,0,-106.966 0/1:95:12,83:12:461:83:3271:-265.849,0,-13.232 0/1:52:17,35:17:679:35:1408:-111.32,0,-45.7843 0/1:45:10,35:10:392:35:1395:-112.254,0,-22.0874 dDocent_Contig_4481 28 . T C 60.9545 . AB=0.108333;ABP=162.903;AC=1;AF=0.125;AN=8;AO=13;CIGAR=1X;DP=334;DPB=334;DPRA=1.68224;EPP=31.2394;EPPR=700.053;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=0.996885;PAO=0;PQA=0;PQR=0;PRO=0;QA=481;QR=12834;RO=321;RPL=0;RPP=31.2394;RPPR=700.053;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=321;SRP=700.053;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:120:107,13:107:4296:13:481:-7.49339,0,-350.468 0/0:72:72,0:72:2859:0:0:0,-21.6742,-257.421 0/0:93:93,0:93:3725:0:0:0,-27.9958,-335.26 0/0:49:49,0:49:1954:0:0:0,-14.7505,-176.064 dDocent_Contig_4482 44 . C T 4585.53 . AB=0.64135;ABP=44.14;AC=4;AF=0.5;AN=8;AO=152;CIGAR=1X;DP=237;DPB=237;DPRA=0;EPP=333.074;EPPR=170.622;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=58.2824;NS=4;NUMALT=1;ODDS=0;PAIRED=0.993421;PAIREDR=0.858824;PAO=0;PQA=0;PQR=0;PRO=0;QA=5959;QR=3369;RO=85;RPL=0;RPP=333.074;RPPR=117.69;RPR=152;RUN=1;SAF=152;SAP=333.074;SAR=0;SRF=78;SRP=131.791;SRR=7;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:74:22,52:22:876:52:2078:-164.934,0,-56.2939 0/1:39:11,28:11:440:28:1085:-86.1886,0,-27.5789 0/1:96:39,57:39:1533:57:2218:-170.904,0,-108.996 0/1:28:13,15:13:520:15:578:-43.924,0,-38.0843 dDocent_Contig_4483 14 . A T 2279.42 . AB=0.0348837;ABP=326.206;AC=0;AF=0;AN=8;AO=6;CIGAR=1X3M1X2M1X2M1X;DP=251;DPB=251;DPRA=0;EPP=16.0391;EPPR=343.931;GTI=0;LEN=1;MEANALT=3.5;MQM=52;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=229;QR=6199;RO=157;RPL=0;RPP=16.0391;RPPR=343.931;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=157;SRP=343.931;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:100:59,5,34:59:2347:5,34:196,1364:-94.627,-96.3573,-288.092,0,-177.214,-183.01 0|0:72:50,1,20:50:1969:1,20:33,805:-51.3253,-63.716,-225.385,0,-159.341,-155.984 0|0:43:22,0,21:22:861:0,21:0,841:-63.0544,-69.6771,-140.462,0,-71.1809,-64.8593 0|0:36:26,0,10:26:1022:0,10:0,409:-26.3335,-34.1603,-118.211,0,-84.4544,-81.4441 dDocent_Contig_4484 209 . N G 695.433 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=20;CIGAR=1X;DP=20;DPB=20;DPRA=0;EPP=46.4397;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=750;QR=0;RO=0;RPL=20;RPP=46.4397;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=46.4397;SAR=20;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:113:-10.539,-0.90309,0 1/1:7:0,7:0:0:7:256:-23.3888,-2.10721,0 1/1:8:0,8:0:0:8:308:-28.0824,-2.40824,0 1/1:2:0,2:0:0:2:73:-6.9307,-0.60206,0 dDocent_Contig_4485 18 . C T 5978.87 . AB=0.0528846;ABP=364.185;AC=0;AF=0;AN=8;AO=11;CIGAR=2X5M1X;DP=288;DPB=288;DPRA=0;EPP=26.8965;EPPR=94.2121;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=0.952381;PAO=0;PQA=0;PQR=0;PRO=0;QA=437;QR=1623;RO=42;RPL=0;RPP=26.8965;RPPR=94.2121;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:85:11,29,37,7:11:423:29,37,7:1150,1448,279:-175.664,-84.3158,-110.31,-59.9409,0,-83.526,-155.999,-96.063,-71.6873,-188.617 0|0:80:9,24,43,0:9:364:24,43,0:936,1682,0:-182.481,-108.259,-131.048,-46.9152,0,-63.9874,-185.19,-138.273,-76.9316,-215.203 0|0:70:21,16,30,3:21:795:16,30,3:641,1185,117:-91.1815,-44.692,-105.027,0,-12.3298,-56.1162,-87.8863,-100.226,-55.5298,-152.135 0|0:53:1,29,20,1:1:41:29,20,1:1147,792,41:-155.958,-61.8624,-56.5178,-91.0728,0,-88.4371,-152.875,-61.8624,-91.0728,-155.958 dDocent_Contig_4486 133 . C A 2531.66 . AB=0.122807;ABP=73.4498;AC=0;AF=0;AN=8;AO=7;CIGAR=1M1X3M1X;DP=119;DPB=119.667;DPRA=0;EPP=18.2106;EPPR=59.4686;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=270;QR=1027;RO=26;RPL=0;RPP=18.2106;RPPR=59.4686;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=59.4686;SRR=26;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:52:11,0,0,41:11:438:0,0,41:0,0,1637:-131.907,-135.218,-171.285,-135.218,-171.285,-171.285,0,-36.4653,-36.4653,-24.123 0|0:10:4,0,0,6:4:157:0,0,6:0,0,235:-18.509,-19.7131,-32.626,-19.7131,-32.626,-32.626,0,-13.3047,-13.3047,-11.4985 0|0:33:5,4,3,21:5:199:4,3,21:144,116,842:-67.8875,-57.6493,-72.8312,-59.8652,-64.5084,-75.3489,0,-4.6595,-6.86755,-10.0756 0|0:24:6,0,4,14:6:233:0,4,14:0,154,537:-42.2604,-44.0665,-63.2131,-31.4214,-50.5683,-49.3642,0,-19.1474,-6.50397,-14.933 dDocent_Contig_4487 28 . A G 13668.4 . AB=0.916667;ABP=111.584;AC=7;AF=0.875;AN=8;AO=401;CIGAR=1X;DP=418;DPB=418;DPRA=0;EPP=847.908;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.992519;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=15884;QR=686;RO=17;RPL=0;RPP=873.771;RPPR=39.9253;RPR=401;RUN=1;SAF=398;SAP=847.908;SAR=3;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:157:2,155:2:80:155:6114:-542.438,-39.6699,0 1/1:134:7,127:7:283:127:5082:-431.405,-14.495,0 0/1:72:6,66:6:241:66:2594:-211.922,0,-0.391933 1/1:55:2,53:2:82:53:2094:-180.866,-8.77697,0 dDocent_Contig_4488 72 . G A 10249.7 . AB=0.818452;ABP=298.977;AC=6;AF=0.75;AN=8;AO=345;CIGAR=1X;DP=410;DPB=410;DPRA=0;EPP=752.168;EPPR=144.156;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=12698;QR=2416;RO=65;RPL=345;RPP=752.168;RPPR=144.156;RPR=0;RUN=1;SAF=345;SAP=752.168;SAR=0;SRF=65;SRP=144.156;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:191:27,164:27:985:164:5950:-477.998,0,-31.4594 0/1:145:34,111:34:1284:111:4131:-328.242,0,-72.2012 1/1:44:3,41:3:107:41:1514:-126.549,-3.26426,0 1/1:30:1,29:1:40:29:1103:-95.5762,-5.03522,0 dDocent_Contig_4489 15 . T G 215.265 . AB=0.13125;ABP=191.983;AC=1;AF=0.125;AN=8;AO=76;CIGAR=1X;DP=1157;DPB=1157;DPRA=0;EPP=25.4108;EPPR=2335.18;GTI=0;LEN=1;MEANALT=1.5;MQM=52.9474;MQMR=51.4007;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.149351;PAO=0;PQA=0;PQR=0;PRO=0;QA=2910;QR=43120;RO=1078;RPL=0;RPP=168.042;RPPR=2343.86;RPR=76;RUN=1;SAF=52;SAP=25.4108;SAR=24;SRF=1077;SRP=2335.18;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:361:346,15:346:13829:15:565:0,-60.7901,-1081.71 0/0:343:321,20:321:12847:20:796:0,-31.6639,-1036.08 0/0:293:272,20:272:10873:20:743:0,-23.0028,-863.565 0/1:160:139,21:139:5571:21:806:-23.2255,0,-429.648 dDocent_Contig_4490 12 . C A 8584.56 . AB=0.497427;ABP=3.04382;AC=4;AF=0.5;AN=8;AO=290;CIGAR=1X;DP=583;DPB=583;DPRA=0;EPP=632.737;EPPR=637.08;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=5.55112e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=11567;QR=11686;RO=292;RPL=0;RPP=632.737;RPPR=637.08;RPR=290;RUN=1;SAF=290;SAP=632.737;SAR=0;SRF=292;SRP=637.08;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:169:65,104:65:2587:104:4173:-324.652,0,-182.086 0/1:165:101,64:101:4050:64:2531:-178.263,0,-314.799 0/1:122:78,44:78:3116:44:1730:-119.193,0,-243.786 0/1:127:48,78:48:1933:78:3133:-243.746,0,-135.875 dDocent_Contig_4492 98 . N G 5343.61 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=175;CIGAR=6X;DP=176;DPB=181.667;DPRA=0;EPP=383.018;EPPR=0;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=17;PQA=583;PQR=0;PRO=0;QA=5929;QR=0;RO=0;RPL=175;RPP=383.018;RPPR=0;RPR=0;RUN=1;SAF=175;SAP=383.018;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:80:0,79:0:0:79:2665:-239.767,-23.7814,0 1|1:52:0,52:0:0:52:1772:-159.42,-15.6536,0 1|1:25:0,25:0:0:25:842:-75.7506,-7.52575,0 1|1:19:0,19:0:0:19:650:-58.821,-5.71957,0 dDocent_Contig_4493 166 . A C 9369.11 . AB=0.886905;ABP=221.45;AC=6;AF=0.75;AN=8;AO=280;CIGAR=1X;DP=303;DPB=303;DPRA=0;EPP=535.362;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=11148;QR=908;RO=23;RPL=271;RPP=535.362;RPPR=52.9542;RPR=9;RUN=1;SAF=0;SAP=611.023;SAR=280;SRF=0;SRP=52.9542;SRR=23;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:129:11,118:11:435:118:4676:-381.933,0,-0.669211 1/1:72:4,68:4:154:68:2714:-230.15,-7.44198,0 1/1:63:0,63:0:0:63:2500:-225.147,-18.9649,0 0/1:39:8,31:8:319:31:1258:-101.743,0,-17.3363 dDocent_Contig_4494 176 . G A 3243.77 . AB=0.653465;ABP=23.6715;AC=5;AF=0.625;AN=8;AO=103;CIGAR=1X;DP=138;DPB=138;DPRA=0;EPP=226.672;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3989;QR=1377;RO=35;RPL=103;RPP=226.672;RPPR=79.0118;RPR=0;RUN=1;SAF=0;SAP=226.672;SAR=103;SRF=0;SRP=79.0118;SRR=35;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:37:0,37:0:0:37:1437:-129.583,-11.1381,0 0/1:60:23,37:23:901:37:1430:-110.885,0,-63.3245 0/1:29:7,22:7:279:22:850:-68.0754,0,-16.7489 0/1:12:5,7:5:197:7:272:-21.2311,0,-14.4937 dDocent_Contig_4495 27 . A T 12813.6 . AB=0.471861;ABP=9.36491;AC=4;AF=0.5;AN=8;AO=436;CIGAR=1X;DP=924;DPB=924;DPRA=0;EPP=949.772;EPPR=1051.83;GTI=0;LEN=1;MEANALT=1.75;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.993789;PAO=0;PQA=0;PQR=0;PRO=0;QA=17409;QR=19248;RO=483;RPL=0;RPP=949.772;RPPR=1051.83;RPR=436;RUN=1;SAF=436;SAP=949.772;SAR=0;SRF=483;SRP=1051.83;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:328:175,153:175:6997:153:6109:-450.835,0,-530.649 0/1:269:155,113:155:6150:113:4517:-325.389,0,-472.176 0/1:170:87,80:87:3472:80:3193:-236.767,0,-261.855 0/1:157:66,90:66:2629:90:3590:-275.763,0,-189.374 dDocent_Contig_4496 49 . C T 19762.9 . AB=0.897796;ABP=688.869;AC=5;AF=0.625;AN=8;AO=636;CIGAR=1X;DP=687;DPB=687;DPRA=0;EPP=1366.75;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=23681;QR=2037;RO=51;RPL=2;RPP=1366.75;RPPR=113.755;RPR=634;RUN=1;SAF=636;SAP=1384.07;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:188:0,188:0:0:188:7074:-636.537,-56.5936,0 0/1:202:17,185:17:686:185:6814:-552.365,0,-1.26268 0/1:163:21,142:21:827:142:5304:-428.286,0,-25.6784 0/1:134:13,121:13:524:121:4489:-363.744,0,-7.16983 dDocent_Contig_4497 27 . A G 1256.18 . AB=0.141321;ABP=730.467;AC=3;AF=0.375;AN=8;AO=102;CIGAR=1X;DP=840;DPB=840;DPRA=0;EPP=224.5;EPPR=1605.56;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4014;QR=29119;RO=738;RPL=0;RPP=224.5;RPPR=1605.56;RPR=102;RUN=1;SAF=102;SAP=224.5;SAR=0;SRF=738;SRP=1605.56;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:291:257,34:257:10136:34:1332:-32.5454,0,-824.027 0/1:194:177,17:177:6998:17:684:-3.48971,0,-571.11 0/1:166:125,41:125:4921:41:1608:-94.9776,0,-392.829 0/0:189:179,10:179:7064:10:390:0,-21.4447,-599.991 dDocent_Contig_4498 1 . N G 70.2685 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=74;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:74:-7.02577,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_4499 150 . A C 134.788 . AB=0.225806;ABP=23.254;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=117;DPB=117;DPRA=1.0814;EPP=18.2106;EPPR=241.872;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=265;QR=4387;RO=110;RPL=0;RPP=18.2106;RPPR=241.872;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=241.872;SRR=110;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:24,7:24:960:7:265:-14.8767,0,-77.367 0/0:25:25,0:25:964:0:0:0,-7.52575,-87.0491 0/0:37:37,0:37:1495:0:0:0,-11.1381,-134.792 0/0:24:24,0:24:968:0:0:0,-7.22472,-87.4176 dDocent_Contig_4500 37 . G A 203.342 . AB=0.104938;ABP=442.238;AC=3;AF=0.375;AN=8;AO=44;CIGAR=1X;DP=452;DPB=452;DPRA=0;EPP=98.5551;EPPR=888.971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1717;QR=15858;RO=408;RPL=0;RPP=98.5551;RPPR=888.971;RPR=44;RUN=1;SAF=44;SAP=98.5551;SAR=0;SRF=408;SRP=888.971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:103:94,9:94:3709:9:354:-1.21337,0,-302.839 0/1:131:116,15:116:4491:15:601:-14.9932,0,-364.712 0/0:128:118,10:118:4641:10:368:0,-5.0739,-384.183 0/1:90:80,10:80:3017:10:394:-8.7216,0,-244.564 dDocent_Contig_4501 142 . A G 4251.37 . AB=0.676301;ABP=49.7158;AC=6;AF=0.75;AN=8;AO=136;CIGAR=1X7M;DP=196;DPB=196;DPRA=0;EPP=298.331;EPPR=65.983;GTI=0;LEN=1;MEANALT=3.5;MQM=57.9706;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=0.948529;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5225;QR=1147;RO=29;RPL=0;RPP=298.331;RPPR=65.983;RPR=136;RUN=1;SAF=0;SAP=298.331;SAR=136;SRF=0;SRP=65.983;SRR=29;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:60:14,3,1,42:14:549:3,1,42:120,40,1647:-131.307,-129.985,-174.223,-132.226,-171.831,-177.069,0,-39.7082,-41.9319,-32.5857 0|1:46:4,1,4,34:4:161:1,4,34:21,161,1324:-107.445,-107.255,-120.226,-95.3765,-107.255,-107.445,0,-11.9218,-6.94871e-08,-3.07354 1|1:67:10,3,13,41:10:397:3,13,41:119,510,1511:-128.453,-125.925,-157.709,-89.5224,-116.675,-118.3,-9.25279,-36.4211,0,-29.6065 1|1:23:1,2,1,19:1:40:2,1,19:60,41,743:-63.2255,-59.2766,-61.97,-60.1411,-59.1871,-63.136,-2.40375,-1.52575,-2.31145,0 dDocent_Contig_4502 8 . T C 52.2101 . AB=0.107527;ABP=127.438;AC=1;AF=0.125;AN=8;AO=11;CIGAR=1X;DP=360;DPB=360;DPRA=0.585903;EPP=26.8965;EPPR=760.854;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=423;QR=13381;RO=349;RPL=0;RPP=26.8965;RPPR=760.854;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=349;SRP=760.854;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:116:116,0:116:4438:0:0:0,-34.9195,-399.479 0/0:111:111,0:111:4274:0:0:0,-33.4143,-384.729 0/1:93:83,10:83:3153:10:384:-6.91998,0,-255.921 0/0:40:39,1:39:1516:1:39:0,-8.14463,-132.814 dDocent_Contig_4503 10 . A T 173.988 . AB=0.204082;ABP=40.2799;AC=1;AF=0.125;AN=8;AO=10;CIGAR=1X;DP=225;DPB=225;DPRA=0.835227;EPP=24.725;EPPR=469.877;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=369;QR=8452;RO=215;RPL=0;RPP=24.725;RPPR=469.877;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=215;SRP=469.877;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:49:39,10:39:1515:10:369:-18.7967,0,-121.841 0/0:83:83,0:83:3288:0:0:0,-24.9855,-295.985 0/0:28:28,0:28:1073:0:0:0,-8.42884,-96.8506 0/0:65:65,0:65:2576:0:0:0,-19.5669,-231.98 dDocent_Contig_4504 22 . T C 245.93 . AB=0.16;ABP=103.419;AC=1;AF=0.125;AN=8;AO=22;CIGAR=1X;DP=742;DPB=742;DPRA=0.553166;EPP=50.7827;EPPR=1555.63;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=59.5925;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.942976;PAO=0;PQA=0;PQR=0;PRO=0;QA=862;QR=28684;RO=719;RPL=0;RPP=50.7827;RPPR=1564.3;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=718;SRP=1555.63;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:279:279,0:279:11097:0:0:0,-83.9874,-997.922 0/0:199:196,3:196:7829:3:117:0,-48.9951,-692.946 0/0:164:160,3:160:6366:3:122:0,-38.104,-558.265 0/1:100:84,16:84:3392:16:623:-26.292,0,-274.349 dDocent_Contig_4506 10 . T A 11693.3 . AB=0.487715;ABP=4.07736;AC=4;AF=0.5;AN=8;AO=397;CIGAR=1X;DP=814;DPB=814;DPRA=0;EPP=865.085;EPPR=902;GTI=0;LEN=1;MEANALT=1.75;MQM=59.6071;MQMR=59.4831;NS=4;NUMALT=1;ODDS=0;PAIRED=0.72796;PAIREDR=0.782609;PAO=0;PQA=0;PQR=0;PRO=0;QA=15832;QR=16457;RO=414;RPL=0;RPP=865.085;RPPR=902;RPR=397;RUN=1;SAF=397;SAP=865.085;SAR=0;SRF=414;SRP=902;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:303:144,158:144:5723:158:6320:-474.716,0,-423.393 0/1:239:111,127:111:4390:127:5061:-382.779,0,-323.229 0/1:202:116,86:116:4628:86:3412:-246.316,0,-351.597 0/1:70:43,26:43:1716:26:1039:-72.9215,0,-133.787 dDocent_Contig_4507 127 . T C 3061.98 . AB=0.804688;ABP=106.223;AC=4;AF=0.5;AN=8;AO=103;CIGAR=1X;DP=128;DPB=128;DPRA=0;EPP=226.672;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3899;QR=917;RO=25;RPL=0;RPP=226.672;RPPR=57.2971;RPR=103;RUN=1;SAF=0;SAP=226.672;SAR=103;SRF=0;SRP=57.2971;SRR=25;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:8,23:8:310:23:868:-69.1014,0,-18.9316 0/1:28:5,23:5:193:23:871:-70.2773,0,-9.31252 0/1:55:9,46:9:317:46:1760:-142.098,0,-12.3045 0/1:14:3,11:3:97:11:400:-32.1195,0,-4.83634 dDocent_Contig_4509 13 . A G 13956.9 . AB=0.902564;ABP=277.496;AC=6;AF=0.75;AN=8;AO=406;CIGAR=2X;DP=425;DPB=425;DPRA=0;EPP=884.628;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.997537;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=16181;QR=718;RO=18;RPL=0;RPP=884.628;RPPR=42.0968;RPR=406;RUN=1;SAF=406;SAP=884.628;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:121:0,121:0:0:121:4817:-433.437,-36.4246,0 0|1:76:8,68:8:319:68:2732:-223.117,0,-6.19778 0|1:119:10,108:10:399:108:4305:-351.509,0,-0.366221 1|1:109:0,109:0:0:109:4327:-389.388,-32.8123,0 dDocent_Contig_4510 33 . A G 9312.7 . AB=0.422136;ABP=43.9273;AC=4;AF=0.5;AN=8;AO=328;CIGAR=1X;DP=777;DPB=777;DPRA=0;EPP=715.253;EPPR=978.001;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.996951;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=13026;QR=17859;RO=449;RPL=0;RPP=715.253;RPPR=978.001;RPR=328;RUN=1;SAF=328;SAP=715.253;SAR=0;SRF=449;SRP=978.001;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:228:115,113:115:4588:113:4523:-338.359,0,-344.208 0/1:196:107,89:107:4237:89:3539:-259.534,0,-322.287 0/1:217:131,86:131:5260:86:3384:-239.28,0,-407.917 0/1:136:96,40:96:3774:40:1580:-101.495,0,-298.726 dDocent_Contig_4511 24 . A G 257.416 . AB=0.118812;ABP=257.954;AC=1;AF=0.125;AN=8;AO=24;CIGAR=1X;DP=539;DPB=539;DPRA=1.79822;EPP=55.1256;EPPR=1116.98;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.996101;PAO=0;PQA=0;PQR=0;PRO=0;QA=975;QR=20336;RO=513;RPL=0;RPP=55.1256;RPPR=1116.98;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=513;SRP=1116.98;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:202:177,24:177:7054:24:975:-27.1395,0,-573.637 0/0:166:166,0:166:6568:0:0:0,-49.971,-590.864 0/0:98:98,0:98:3866:0:0:0,-29.5009,-347.95 0/0:73:72,0:72:2848:0:0:0,-21.6742,-256.022 dDocent_Contig_4512 25 . T C 208.015 . AB=0.184615;ABP=59.1679;AC=2;AF=0.25;AN=8;AO=12;CIGAR=1X;DP=120;DPB=120;DPRA=1.18182;EPP=29.068;EPPR=237.529;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.5;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=478;QR=4288;RO=108;RPL=0;RPP=29.068;RPPR=237.529;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=108;SRP=237.529;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:34:27,7:27:1071:7:282:-15.5171,0,-86.4455 0/1:31:26,5:26:1030:5:196:-8.68237,0,-83.658 0/0:31:31,0:31:1227:0:0:0,-9.33193,-110.701 0/0:24:24,0:24:960:0:0:0,-7.22472,-86.701 dDocent_Contig_4513 24 . G A 844.41 . AB=0.290598;ABP=47.5719;AC=2;AF=0.25;AN=8;AO=37;CIGAR=1X;DP=231;DPB=231;DPRA=1.20667;EPP=83.3548;EPPR=424.276;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1483;QR=7689;RO=194;RPL=0;RPP=83.3548;RPPR=424.276;RPR=37;RUN=1;SAF=37;SAP=83.3548;SAR=0;SRF=194;SRP=424.276;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:100:69,31:69:2735:31:1238:-81.584,0,-216.159 0/0:64:61,3:61:2403:3:123:0,-7.80113,-204.965 0/0:50:50,0:50:1996:0:0:0,-15.0515,-179.83 0/1:17:14,3:14:555:3:122:-6.25498,0,-45.1722 dDocent_Contig_4514 13 . G A 9446.68 . AB=0.633684;ABP=76.7444;AC=4;AF=0.5;AN=8;AO=301;CIGAR=4M1X1M;DP=475;DPB=468.5;DPRA=0;EPP=656.623;EPPR=352.617;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.987578;PAO=0;PQA=0;PQR=0;PRO=0;QA=12129;QR=6355;RO=161;RPL=0;RPP=656.623;RPPR=352.617;RPR=301;RUN=1;SAF=301;SAP=656.623;SAR=0;SRF=161;SRP=352.617;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:115:63,0,52:63:2481:0,52:0,2076:-152.402,-171.367,-375.465,0,-204.495,-188.841 0|1:120:29,0,91:29:1139:0,91:0,3680:-295.075,-303.805,-397.482,0,-94.0724,-66.6787 0|1:128:36,6,86:36:1421:6,86:232,3459:-274.231,-266.013,-381.128,0,-97.8757,-91.0425 0|1:112:33,7,72:33:1314:7,72:264,2914:-230.358,-218.659,-324.752,0,-86.5878,-86.5454 dDocent_Contig_4515 14 . T C 9239.19 . AB=0.559199;ABP=19.7215;AC=4;AF=0.5;AN=8;AO=307;CIGAR=1X1M1X;DP=549;DPB=549;DPRA=0;EPP=669.652;EPPR=528.507;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.9587;NS=4;NUMALT=1;ODDS=2.77556e-17;PAIRED=0.990228;PAIREDR=0.995868;PAO=0;PQA=0;PQR=0;PRO=0;QA=12180;QR=9538;RO=242;RPL=0;RPP=669.652;RPPR=528.507;RPR=307;RUN=1;SAF=307;SAP=669.652;SAR=0;SRF=242;SRP=528.507;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:211:96,115:96:3772:115:4550:-345.934,0,-276.002 0|1:168:82,86:82:3253:86:3410:-256.388,0,-242.276 0|1:108:36,72:36:1403:72:2868:-225.716,0,-93.9913 0|1:62:28,34:28:1110:34:1352:-103.279,0,-81.5259 dDocent_Contig_4516 27 . A G 34.2563 . AB=0.121212;ABP=44.1367;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=117;DPB=117;DPRA=1.925;EPP=13.8677;EPPR=212.712;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.794643;PAO=0;PQA=0;PQR=0;PRO=0;QA=204;QR=4450;RO=112;RPL=0;RPP=13.8677;RPPR=246.215;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=108;SRP=212.712;SRR=4;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:44:43,1:43:1691:1:41:0,-9.15075,-148.329 0/0:26:26,0:26:1027:0:0:0,-7.82678,-92.7232 0/1:33:29,4:29:1177:4:163:-5.12444,0,-96.2712 0/0:14:14,0:14:555:0:0:0,-4.21442,-50.292 dDocent_Contig_4517 63 . T C 83.8385 . AB=0.157895;ABP=41.6397;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=100;DPB=100;DPRA=1.5;EPP=18.2106;EPPR=202.786;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.5;PAO=0;PQA=0;PQR=0;PRO=0;QA=271;QR=3509;RO=92;RPL=7;RPP=18.2106;RPPR=202.786;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=92;SRP=202.786;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:23:22,0:22:844:0:0:0,-6.62266,-76.1504 0/0:17:17,0:17:663:0:0:0,-5.11751,-60.0011 0/0:22:21,1:21:802:1:36:0,-3.02438,-68.9075 0/1:38:32,6:32:1200:6:235:-10.0828,0,-96.8552 dDocent_Contig_4518 15 . C T 333.811 . AB=0.141176;ABP=193.129;AC=1;AF=0.125;AN=8;AO=28;CIGAR=1X;DP=570;DPB=570;DPRA=0.711712;EPP=63.8115;EPPR=1177.78;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.998152;PAO=0;PQA=0;PQR=0;PRO=0;QA=1108;QR=21759;RO=541;RPL=0;RPP=63.8115;RPPR=1177.78;RPR=28;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=541;SRP=1177.78;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:159:159,0:159:6364:0:0:0,-47.8638,-572.473 0/0:174:173,0:173:6983:0:0:0,-52.0782,-627.998 0/1:170:146,24:146:5888:24:955:-35.0801,0,-478.508 0/0:67:63,4:63:2524:4:153:0,-6.0289,-213.157 dDocent_Contig_4519 98 . N T 2606.62 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=90;CIGAR=1X;DP=90;DPB=90;DPRA=0;EPP=198.443;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=2875;QR=0;RO=0;RPL=90;RPP=198.443;RPPR=0;RPR=0;RUN=1;SAF=90;SAP=198.443;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:16:0,16:0:0:16:515:-46.6599,-4.81648,0 1/1:6:0,6:0:0:6:194:-17.7789,-1.80618,0 1/1:41:0,41:0:0:41:1302:-117.464,-12.3422,0 1/1:27:0,27:0:0:27:864:-78.0604,-8.12781,0 dDocent_Contig_4520 12 . C T 17883.8 . AB=0.514694;ABP=5.24376;AC=4;AF=0.5;AN=8;AO=613;CIGAR=1X1M1X;DP=1191;DPB=1191;DPRA=0;EPP=1334.12;EPPR=1149.55;GTI=0;LEN=1;MEANALT=2.25;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=23792;QR=20971;RO=528;RPL=0;RPP=1334.12;RPPR=1149.55;RPR=613;RUN=1;SAF=613;SAP=1334.12;SAR=0;SRF=528;SRP=1149.55;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:370:173,17,179:173:6890:17,179:682,6921:-516.352,-512.236,-1074.45,0,-511.142,-513.451 0|1:352:167,9,176:167:6651:9,176:360,6863:-513.825,-534.441,-1079.38,0,-517.991,-494.665 0|1:331:132,18,181:132:5206:18,181:718,7022:-537.15,-517.754,-940.631,0,-369.157,-373.803 0|1:138:56,5,77:56:2224:5,77:196,2986:-228.447,-229.186,-410.763,0,-166.965,-159.903 dDocent_Contig_4521 12 . C T 944.531 . AB=0.261438;ABP=78.6428;AC=2;AF=0.25;AN=8;AO=46;CIGAR=1X;DP=329;DPB=329;DPRA=0.972222;EPP=102.898;EPPR=617.537;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=57.6007;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=0.696113;PAO=0;PQA=0;PQR=0;PRO=0;QA=1832;QR=11456;RO=283;RPL=0;RPP=102.898;RPPR=617.537;RPR=46;RUN=1;SAF=46;SAP=102.898;SAR=0;SRF=283;SRP=617.537;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:84:84,0:84:3404:0:0:0,-25.2865,-303.637 0/1:117:82,35:82:3333:35:1388:-89.9441,0,-258.082 0/0:92:86,6:86:3476:6:240:0,-5.71961,-287.819 0/1:36:31,5:31:1243:5:204:-7.90695,0,-100.638 dDocent_Contig_4522 14 . A T 2793 . AB=0.195489;ABP=110.131;AC=2;AF=0.25;AN=8;AO=26;CIGAR=2X;DP=133;DPB=133;DPRA=0;EPP=59.4686;EPPR=59.4686;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=1.38778e-17;PAIRED=0.961538;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1033;QR=1054;RO=26;RPL=0;RPP=59.4686;RPPR=59.4686;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:32:3,7,22:3:121:7,22:265,892:-84.3944,-63.5863,-71.4531,-11.7187,0,-15.0777 0|0:34:3,2,29:3:120:2,29:81,1157:-94.3629,-88.5864,-97.8697,0,-3.20114,-1.15241 1|0:37:8,12,17:8:322:12,17:486,682:-67.32,-29.6517,-52.5776,-13.5396,0,-34.9589 0|0:30:12,5,13:12:491:5,13:201,526:-39.7579,-26.807,-65.824,0,-23.9631,-36.6116 dDocent_Contig_4523 28 . T C 12388.1 . AB=0.45951;ABP=10.5716;AC=4;AF=0.5;AN=8;AO=244;CIGAR=1X3M1X;DP=531;DPB=531;DPRA=0;EPP=532.85;EPPR=157.185;GTI=0;LEN=1;MEANALT=3.25;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=5.55112e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=9724;QR=2774;RO=71;RPL=0;RPP=532.85;RPPR=157.185;RPR=244;RUN=1;SAF=244;SAP=532.85;SAR=0;SRF=71;SRP=157.185;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:174:23,73,76:23:880:73,76:2930,3040:-412.725,-178.222,-228.449,-169.245,0,-218.568 1|0:153:23,57,71:23:909:57,71:2257,2846:-338.5,-159.668,-217.312,-110.954,0,-164.385 1|0:145:23,66,55:23:908:66,55:2622,2185:-314.082,-105.149,-159.995,-141.144,0,-199.301 1|0:59:2,48,9:2:77:48,9:1915,365:-180.898,-23.7988,-15.6678,-151.399,0,-155.011 dDocent_Contig_4524 148 . T C 175.582 . AB=0.156627;ABP=88.0117;AC=2;AF=0.25;AN=8;AO=13;CIGAR=1X;DP=175;DPB=175;DPRA=0.902174;EPP=31.2394;EPPR=354.789;GTI=0;LEN=1;MEANALT=1;MQM=53;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=0.993827;PAO=0;PQA=0;PQR=0;PRO=0;QA=504;QR=6311;RO=162;RPL=0;RPP=31.2394;RPPR=354.789;RPR=13;RUN=1;SAF=0;SAP=31.2394;SAR=13;SRF=0;SRP=354.789;SRR=162;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:53:53,0:53:2061:0:0:0,-15.9546,-185.676 0/1:44:38,6:38:1446:6:234:-8.11144,0,-117.128 0/1:39:32,7:32:1250:7:270:-12.8447,0,-101.037 0/0:39:39,0:39:1554:0:0:0,-11.7402,-140.102 dDocent_Contig_4525 31 . T C 93.5461 . AB=0.307692;ABP=7.18621;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=43;DPB=43;DPRA=1.3;EPP=11.6962;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.871795;PAO=0;PQA=0;PQR=0;PRO=0;QA=162;QR=1547;RO=39;RPL=0;RPP=11.6962;RPPR=87.6977;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:13:13,0:13:513:0:0:0,-3.91339,-46.5144 0/0:10:10,0:10:405:0:0:0,-3.0103,-36.8106 0/1:13:9,4:9:354:4:162:-11.0536,0,-28.3059 0/0:7:7,0:7:275:0:0:0,-2.10721,-25.118 dDocent_Contig_4526 79 . T C 144.007 . AB=0.129032;ABP=188.286;AC=2;AF=0.25;AN=8;AO=20;CIGAR=1X;DP=238;DPB=238;DPRA=1.86747;EPP=46.4397;EPPR=476.391;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=707;QR=7676;RO=218;RPL=20;RPP=46.4397;RPPR=476.391;RPR=0;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=218;SRP=476.391;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:99:85,14:85:3020:14:502:-15.7153,0,-242.232 0/0:34:34,0:34:1199:0:0:0,-10.235,-108.215 0/1:56:50,6:50:1763:6:205:-1.92731,0,-142.096 0/0:49:49,0:49:1694:0:0:0,-14.7505,-152.741 dDocent_Contig_4527 1 . N G 607.42 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=17;CIGAR=1X;DP=17;DPB=17;DPRA=0;EPP=39.9253;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=1.69407e-21;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=656;QR=0;RO=0;RPL=0;RPP=39.9253;RPPR=0;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:6:0,6:0:0:6:240:-21.9745,-1.80618,0 1/1:7:0,7:0:0:7:262:-23.9325,-2.10721,0 1/1:4:0,4:0:0:4:154:-14.2328,-1.20412,0 dDocent_Contig_4528 40 . T C 3208.58 . AB=0.715278;ABP=60.9765;AC=4;AF=0.5;AN=8;AO=103;CIGAR=1X;DP=144;DPB=144;DPRA=0;EPP=226.672;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.902439;PAO=0;PQA=0;PQR=0;PRO=0;QA=4116;QR=1604;RO=41;RPL=0;RPP=226.672;RPPR=92.0407;RPR=103;RUN=1;SAF=103;SAP=226.672;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:43:15,28:15:582:28:1111:-87.3271,0,-39.7631 0/1:33:10,23:10:401:23:931:-74.1576,0,-26.515 0/1:47:12,35:12:459:35:1404:-112.463,0,-27.4996 0/1:21:4,17:4:162:17:670:-54.3079,0,-8.64533 dDocent_Contig_4529 26 . T A 1014.02 . AB=0.163772;ABP=398.73;AC=3;AF=0.375;AN=8;AO=87;CIGAR=1X;DP=655;DPB=655;DPRA=0;EPP=191.928;EPPR=1234.24;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3359;QR=22474;RO=567;RPL=0;RPP=191.928;RPPR=1234.24;RPR=87;RUN=1;SAF=87;SAP=191.928;SAR=0;SRF=567;SRP=1234.24;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:252:231,21:231:9155:21:836:0,-0.304573,-747.863 0/1:185:162,22:162:6382:22:829:-19.3368,0,-518.565 0/1:135:118,17:118:4702:17:657:-18.8205,0,-382.457 0/1:83:56,27:56:2235:27:1037:-68.6416,0,-176.336 dDocent_Contig_4530 50 . C A 1737.76 . AB=0.318352;ABP=79.5323;AC=4;AF=0.5;AN=8;AO=85;CIGAR=1X;DP=267;DPB=267;DPRA=0;EPP=187.585;EPPR=398.218;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.988235;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2892;QR=6227;RO=182;RPL=85;RPP=187.585;RPPR=398.218;RPR=0;RUN=1;SAF=85;SAP=187.585;SAR=0;SRF=182;SRP=398.218;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:80:47,33:47:1601:33:1113:-76.3884,0,-120.295 0/1:89:64,25:64:2187:25:857:-50.6534,0,-170.305 0/1:64:45,19:45:1534:19:649:-39.465,0,-119.085 0/1:34:26,8:26:905:8:273:-14.6674,0,-71.5321 dDocent_Contig_4531 19 . A G 971.185 . AB=0.330357;ABP=31.0068;AC=3;AF=0.375;AN=8;AO=43;CIGAR=1X;DP=250;DPB=250;DPRA=0;EPP=96.3836;EPPR=452.505;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1735;QR=8342;RO=207;RPL=0;RPP=96.3836;RPPR=452.505;RPR=43;RUN=1;SAF=43;SAP=96.3836;SAR=0;SRF=207;SRP=452.505;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:49:44,5:44:1776:5:204:-3.99356,0,-145.3 0/0:138:132,6:132:5320:6:233:0,-20.209,-457.294 0/1:32:12,20:12:486:20:806:-63.223,0,-34.4583 0/1:31:19,12:19:760:12:492:-35.2989,0,-59.3882 dDocent_Contig_4532 121 . T A 1204.1 . AB=0.227692;ABP=212.334;AC=4;AF=0.5;AN=8;AO=74;CIGAR=1X;DP=325;DPB=325;DPRA=0;EPP=163.699;EPPR=545.878;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2487;QR=8523;RO=250;RPL=0;RPP=163.699;RPPR=545.878;RPR=74;RUN=1;SAF=0;SAP=163.699;SAR=74;SRF=0;SRP=545.878;SRR=250;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:112:85,26:85:2873:26:916:-49.2043,0,-225.261 0/1:76:67,9:67:2300:9:269:-1.62298,0,-184.379 0/1:88:68,20:68:2314:20:686:-35.5682,0,-182.027 0/1:49:30,19:30:1036:19:616:-40.9924,0,-78.7966 dDocent_Contig_4533 98 . N A 220.453 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=7;CIGAR=1X;DP=7;DPB=7;DPRA=0;EPP=18.2106;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=234;QR=0;RO=0;RPL=7;RPP=18.2106;RPPR=0;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:6:0,6:0:0:6:198:-18.1448,-1.80618,0 ./.:.:.:.:.:.:.:. 1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0 dDocent_Contig_4534 57 . G A 2396.67 . AB=0.663866;ABP=30.765;AC=4;AF=0.5;AN=8;AO=79;CIGAR=1X;DP=119;DPB=119;DPRA=0;EPP=174.557;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.925;PAO=0;PQA=0;PQR=0;PRO=0;QA=3122;QR=1560;RO=40;RPL=79;RPP=174.557;RPPR=89.8692;RPR=0;RUN=1;SAF=79;SAP=174.557;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:40:9,31:9:342:31:1209:-97.0379,0,-19.0842 0/1:41:19,22:19:755:22:860:-65.362,0,-55.928 0/1:29:11,18:11:422:18:729:-57.2052,0,-29.5948 0/1:9:1,8:1:41:8:324:-26.8199,0,-1.3853 dDocent_Contig_4535 66 . C G 934.813 . AB=0.235294;ABP=116.821;AC=4;AF=0.5;AN=8;AO=44;CIGAR=1X;DP=187;DPB=187;DPRA=0;EPP=98.5551;EPPR=311.359;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1732;QR=5681;RO=142;RPL=44;RPP=98.5551;RPPR=311.359;RPR=0;RUN=1;SAF=44;SAP=98.5551;SAR=0;SRF=142;SRP=311.359;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:74:64,10:64:2553:10:396:-13.7215,0,-207.624 0/1:60:48,11:48:1914:11:416:-19.6066,0,-154.293 0/1:35:24,11:24:972:11:444:-29.7798,0,-77.2427 0/1:18:6,12:6:242:12:476:-37.7713,0,-16.7384 dDocent_Contig_4536 10 . T A 26676.5 . AB=0.145438;ABP=1211.79;AC=3;AF=0.375;AN=8;AO=161;CIGAR=1X3M1X2M1X;DP=1107;DPB=1107;DPRA=0;EPP=352.617;EPPR=276.616;GTI=0;LEN=1;MEANALT=3.75;MQM=44;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.944444;PAO=0;PQA=0;PQR=0;PRO=0;QA=6400;QR=4990;RO=126;RPL=0;RPP=352.617;RPPR=276.616;RPR=161;RUN=1;SAF=161;SAP=352.617;SAR=0;SRF=126;SRP=276.616;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:312:34,58,217:34:1347:58,217:2306,8603:-743.142,-570.761,-664.17,-71.7379,0,-117.287 0|0:262:41,34,185:41:1626:34,185:1334,7361:-583.647,-490.239,-613.851,0,-28.1099,-78.1656 1|0:320:33,37,250:33:1298:37,250:1481,9892:-803.251,-695.937,-791.567,-10.4736,0,-41.9875 1|0:213:18,32,160:18:719:32,160:1279,6327:-545.009,-449.214,-498.804,-41.9828,0,-53.0462 dDocent_Contig_4537 31 . A G 286.22 . AB=0;ABP=0;AC=0;AF=0;AN=8;AO=7;CIGAR=2X;DP=434;DPB=434;DPRA=0;EPP=18.2106;EPPR=834.684;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=59.9739;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=0.994778;PAO=0;PQA=0;PQR=0;PRO=0;QA=282;QR=15056;RO=383;RPL=0;RPP=18.2106;RPPR=834.684;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=383;SRP=834.684;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:110:97,7,6,0:97:3843:7,6,0:282,240,0:0,-5.95501,-320.138,-9.4324,-302.476,-323.914,-29.1999,-322.245,-325.72,-345.489 0|0:170:154,0,1,15:154:6045:0,1,15:0,40,591:-2.25379,-48.6124,-545.731,-45.317,-542.436,-542.135,0,-497.113,-493.818,-492.597 0|0:82:67,0,0,15:67:2656:0,0,15:0,0,600:-29.6528,-49.8219,-268.419,-49.8219,-268.419,-268.419,0,-218.996,-218.996,-214.48 0|0:72:65,0,0,7:65:2512:0,0,7:0,0,257:-1.80299,-21.3699,-227.679,-21.3699,-227.679,-227.679,0,-206.678,-206.678,-204.571 dDocent_Contig_4538 30 . C T 2853.68 . AB=0.656489;ABP=30.8748;AC=5;AF=0.625;AN=8;AO=86;CIGAR=1X3M;DP=131;DPB=131;DPRA=0;EPP=189.757;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1.75;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3357;QR=1348;RO=34;RPL=0;RPP=189.757;RPPR=76.8404;RPR=86;RUN=1;SAF=86;SAP=189.757;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:31:15,0,16:15:592:0,16:0,639:-48.5126,-53.0281,-101.733,0,-49.1012,-44.2847 1|1:26:0,8,18:0:0:8,18:319,697:-83.908,-57.6335,-55.2253,-26.6692,0,-21.2507 0|1:34:7,2,25:7:278:2,25:79,958:-76.4936,-72.099,-94.3868,0,-16.388,-15.3627 0|1:40:12,1,27:12:478:1,27:37,1063:-83.8518,-84.438,-123.5,0,-36.3628,-31.2599 dDocent_Contig_4539 19 . G A 187.518 . AB=0.209302;ABP=34.5724;AC=1;AF=0.125;AN=8;AO=11;CIGAR=1X;DP=179;DPB=179;DPRA=1.41892;EPP=26.8965;EPPR=367.818;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=448;QR=6678;RO=168;RPL=0;RPP=26.8965;RPPR=367.818;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=168;SRP=367.818;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:23:23,0:23:929:0:0:0,-6.92369,-83.91 0/0:62:60,2:60:2381:2:81:0,-10.9781,-206.75 0/0:51:51,0:51:2017:0:0:0,-15.3525,-181.716 0/1:43:34,9:34:1351:9:367:-20.4508,0,-108.89 dDocent_Contig_4540 35 . A C 571.586 . AB=0.143382;ABP=303.472;AC=3;AF=0.375;AN=8;AO=48;CIGAR=1X;DP=406;DPB=406;DPRA=0;EPP=107.241;EPPR=780.397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.979167;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1952;QR=14255;RO=358;RPL=0;RPP=107.241;RPPR=780.397;RPR=48;RUN=1;SAF=48;SAP=107.241;SAR=0;SRF=358;SRP=780.397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:149:130,19:130:5138:19:775:-25.215,0,-417.45 0/0:134:125,9:125:4988:9:364:0,-7.21474,-415.682 0/1:91:74,17:74:2967:17:693:-35.3043,0,-239.724 0/1:32:29,3:29:1162:3:120:-1.55435,0,-95.2275 dDocent_Contig_4541 43 . G T 5206.18 . AB=0.553525;ABP=12.541;AC=4;AF=0.5;AN=8;AO=212;CIGAR=1X;DP=383;DPB=383;DPRA=0;EPP=463.362;EPPR=372.161;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=59.2;NS=4;NUMALT=1;ODDS=0;PAIRED=0.90566;PAIREDR=0.852941;PAO=0;PQA=0;PQR=0;PRO=0;QA=7136;QR=5875;RO=170;RPL=0;RPP=463.362;RPPR=372.161;RPR=212;RUN=1;SAF=0;SAP=463.362;SAR=212;SRF=0;SRP=372.161;SRR=170;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:109:60,49:60:2059:49:1641:-115.164,0,-152.773 0/1:88:49,39:49:1698:39:1310:-91.7054,0,-126.619 0/1:130:45,84:45:1566:84:2821:-214.946,0,-98.6131 0/1:56:16,40:16:552:40:1364:-106.201,0,-33.1489 dDocent_Contig_4544 193 . G A 3205.95 . AB=0.833333;ABP=118.822;AC=5;AF=0.625;AN=8;AO=112;CIGAR=1X;DP=132;DPB=132;DPRA=0;EPP=246.215;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4010;QR=797;RO=20;RPL=112;RPP=246.215;RPPR=46.4397;RPR=0;RUN=1;SAF=0;SAP=246.215;SAR=112;SRF=0;SRP=46.4397;SRR=20;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:12:0,12:0:0:12:422:-38.3126,-3.61236,0 0/1:31:5,26:5:204:26:923:-74.0447,0,-9.4121 0/1:51:8,43:8:310:43:1538:-123.341,0,-12.9066 0/1:38:7,31:7:283:31:1127:-90.2942,0,-14.4039 dDocent_Contig_4545 8 . T C 46.1428 . AB=0.181818;ABP=22.3561;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X3M1X;DP=75;DPB=75;DPRA=1.24528;EPP=11.6962;EPPR=148.621;GTI=0;LEN=1;MEANALT=1;MQM=56.25;MQMR=59.9859;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.971831;PAO=0;PQA=0;PQR=0;PRO=0;QA=140;QR=2770;RO=71;RPL=0;RPP=11.6962;RPPR=157.185;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=70;SRP=148.621;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:18:18,0:18:693:0:0:0,-5.41854,-62.6985 0|1:22:18,4:18:705:4:140:-6.31324,0,-57.1586 0|0:14:14,0:14:549:0:0:0,-4.21442,-49.7538 0|0:21:21,0:21:823:0:0:0,-6.32163,-74.3892 dDocent_Contig_4546 37 . C G 216.276 . AB=0.106918;ABP=429.793;AC=3;AF=0.375;AN=8;AO=35;CIGAR=1X;DP=386;DPB=386;DPRA=0;EPP=79.0118;EPPR=758.683;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.997126;PAO=0;PQA=0;PQR=0;PRO=0;QA=1391;QR=13650;RO=348;RPL=0;RPP=79.0118;RPPR=758.683;RPR=35;RUN=1;SAF=35;SAP=79.0118;SAR=0;SRF=348;SRP=758.683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:126:112,12:112:4381:12:484:-6.18336,0,-356.551 0/1:90:81,9:81:3200:9:364:-6.03168,0,-260.997 0/1:102:89,13:89:3494:13:502:-14.8105,0,-283.809 0/0:68:66,1:66:2575:1:41:0,-16.3192,-227.968 dDocent_Contig_4547 45 . T A 429.997 . AB=0.101562;ABP=356.01;AC=2;AF=0.25;AN=8;AO=26;CIGAR=8M1X;DP=256;DPB=236.556;DPRA=0;EPP=59.4686;EPPR=439.476;GTI=0;LEN=1;MEANALT=2.75;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.0384615;PAIREDR=0.905473;PAO=0;PQA=0;PQR=0;PRO=0;QA=1045;QR=7839;RO=201;RPL=0;RPP=59.4686;RPPR=439.476;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=201;SRP=439.476;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:104:81,15,7:81:3145:15,7:574,282:-22.704,0,-253.874,-23.8389,-235.146,-280.139 0|0:76:63,7,6:63:2484:7,6:255,245:-1.83886,0,-202.251,-0.568069,-184.142,-203.16 0|1:32:23,3,6:23:897:3,6:110,237:-12.5962,-10.5394,-83.363,0,-64.7639,-71.945 0|1:44:34,0,7:34:1313:0,7:0,281:-13.0114,-23.2464,-131.093,0,-107.935,-105.828 dDocent_Contig_4549 97 . T A 253.066 . AB=0.315789;ABP=14.2105;AC=5;AF=0.625;AN=8;AO=14;CIGAR=1X;DP=40;DPB=40;DPRA=0;EPP=33.4109;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=454;QR=886;RO=26;RPL=14;RPP=33.4109;RPPR=59.4686;RPR=0;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:7:2,5:2:68:5:165:-13.0684,0,-4.35072 0/1:20:16,4:16:551:4:129:-5.90896,0,-43.8956 0/1:11:8,3:8:267:3:95:-5.55305,0,-21.0447 1/1:2:0,2:0:0:2:65:-6.17329,-0.60206,0 dDocent_Contig_4550 15 . A G 1580.67 . AB=0.641975;ABP=17.1919;AC=4;AF=0.5;AN=8;AO=52;CIGAR=2X;DP=81;DPB=81;DPRA=0;EPP=115.927;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2094;QR=1151;RO=29;RPL=0;RPP=115.927;RPPR=65.983;RPR=52;RUN=1;SAF=52;SAP=115.927;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:36:14,22:14:562:22:889:-69.4814,0,-40.0863 0|1:14:2,12:2:82:12:489:-40.1467,0,-3.56526 0|1:11:5,6:5:199:6:244:-19.0273,0,-14.9772 0|1:20:8,12:8:308:12:472:-36.8064,0,-22.0558 dDocent_Contig_4552 43 . G A 128.316 . AB=0.272727;ABP=12.8806;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=59;DPB=59;DPRA=1.78378;EPP=16.0391;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=231;QR=2085;RO=53;RPL=0;RPP=16.0391;RPPR=118.098;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:10:10,0:10:390:0:0:0,-3.0103,-35.452 0/1:22:16,6:16:623:6:231:-14.5305,0,-49.7781 0/0:18:18,0:18:711:0:0:0,-5.41854,-64.3171 0/0:9:9,0:9:361:0:0:0,-2.70927,-32.8539 dDocent_Contig_4553 8 . C T 9364.73 . AB=0.658891;ABP=426.013;AC=4;AF=0.5;AN=8;AO=1271;CIGAR=1X;DP=1929;DPB=1929;DPRA=0;EPP=2762.95;EPPR=1425.32;GTI=0;LEN=1;MEANALT=1.5;MQM=13.3824;MQMR=13.6412;NS=4;NUMALT=1;ODDS=1.11022e-16;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=48839;QR=25152;RO=655;RPL=0;RPP=2762.95;RPPR=1425.32;RPR=1271;RUN=1;SAF=1271;SAP=2762.95;SAR=0;SRF=655;SRP=1425.32;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:460:153,304:153:5898:304:11651:-221.854,0,-44.7292 0/1:393:124,269:124:4780:269:10360:-204.695,0,-26.6547 0/1:594:215,379:215:8275:379:14586:-283.179,0,-93.3818 0/1:482:163,319:163:6199:319:12242:-234.144,0,-53.2975 dDocent_Contig_4555 116 . C A 5534.12 . AB=0.582418;ABP=24.4864;AC=4;AF=0.5;AN=8;AO=212;CIGAR=1X;DP=364;DPB=364;DPRA=0;EPP=463.362;EPPR=330.903;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7437;QR=5202;RO=151;RPL=0;RPP=463.362;RPPR=330.903;RPR=212;RUN=1;SAF=0;SAP=463.362;SAR=212;SRF=0;SRP=330.903;SRR=151;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:155:78,77:78:2687:77:2723:-198.656,0,-195.426 0/1:56:12,44:12:409:44:1557:-123.564,0,-20.2796 0/1:75:34,40:34:1174:40:1380:-101.858,0,-83.3302 0/1:78:27,51:27:932:51:1777:-136.731,0,-60.714 dDocent_Contig_4556 58 . T C 458.772 . AB=0.141343;ABP=319.209;AC=4;AF=0.5;AN=8;AO=40;CIGAR=1X;DP=283;DPB=283;DPRA=0;EPP=89.8692;EPPR=530.678;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1523;QR=9420;RO=243;RPL=40;RPP=89.8692;RPPR=530.678;RPR=0;RUN=1;SAF=40;SAP=89.8692;SAR=0;SRF=243;SRP=530.678;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:78:70,8:70:2731:8:291:-3.05187,0,-222.46 0/1:106:94,12:94:3617:12:465:-10.2864,0,-293.696 0/1:49:42,7:42:1624:7:260:-9.00411,0,-131.657 0/1:50:37,13:37:1448:13:507:-30.9233,0,-115.535 dDocent_Contig_4557 120 . C T 7338.09 . AB=0.876344;ABP=231.832;AC=6;AF=0.75;AN=8;AO=272;CIGAR=1X;DP=299;DPB=299;DPRA=0;EPP=593.651;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=8940;QR=880;RO=26;RPL=0;RPP=593.651;RPPR=59.4686;RPR=272;RUN=1;SAF=0;SAP=593.651;SAR=272;SRF=0;SRP=59.4686;SRR=26;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:96:11,85:11:364:85:2743:-218.22,0,-4.18046 0/1:90:11,78:11:380:78:2613:-208.459,0,-7.55664 1/1:75:4,71:4:136:71:2386:-202.425,-10.0016,0 1/1:38:0,38:0:0:38:1198:-108.103,-11.4391,0 dDocent_Contig_4558 81 . T A 21616.1 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=729;CIGAR=1X;DP=758;DPB=758;DPRA=0;EPP=1586.01;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.969822;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=25022;QR=1003;RO=29;RPL=729;RPP=1586.01;RPPR=65.983;RPR=0;RUN=1;SAF=729;SAP=1586.01;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:223:6,217:6:210:217:7468:-652.977,-47.8872,0 1/1:207:15,192:15:517:192:6621:-549.159,-15.4553,0 1/1:173:1,172:1:35:172:5845:-522.703,-48.5796,0 1/1:155:7,148:7:241:148:5088:-436.071,-24.6333,0 dDocent_Contig_4559 177 . T C 2052.31 . AB=0.638298;ABP=10.8184;AC=6;AF=0.75;AN=8;AO=64;CIGAR=1X;DP=82;DPB=82;DPRA=0;EPP=141.985;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2506;QR=705;RO=18;RPL=64;RPP=141.985;RPPR=42.0968;RPR=0;RUN=1;SAF=0;SAP=141.985;SAR=64;SRF=0;SRP=42.0968;SRR=18;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:21:0,21:0:0:21:811:-73.3043,-6.32163,0 1/1:14:1,13:1:41:13:521:-43.1413,-0.119853,0 0/1:27:9,18:9:345:18:691:-54.3824,0,-23.2768 0/1:20:8,12:8:319:12:483:-37.7999,0,-23.0565 dDocent_Contig_4560 11 . G A 16107.4 . AB=0.641884;ABP=144.118;AC=4;AF=0.5;AN=8;AO=518;CIGAR=1X;DP=807;DPB=807;DPRA=0;EPP=1127.83;EPPR=630.566;GTI=0;LEN=1;MEANALT=1;MQM=59.9923;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.998069;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=20685;QR=11482;RO=289;RPL=0;RPP=1127.83;RPPR=630.566;RPR=518;RUN=1;SAF=518;SAP=1127.83;SAR=0;SRF=289;SRP=630.566;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:235:47,188:47:1889:188:7483:-602.344,0,-99.4701 0/1:198:82,116:82:3206:116:4647:-358.538,0,-228.994 0/1:212:101,111:101:4026:111:4443:-335.968,0,-298.498 0/1:162:59,103:59:2361:103:4112:-321.289,0,-163.874 dDocent_Contig_4561 27 . A G 31.1688 . AB=0.117647;ABP=46.1843;AC=2;AF=0.25;AN=8;AO=4;CIGAR=2X2M1X1M2X;DP=87;DPB=87;DPRA=0.641509;EPP=11.6962;EPPR=174.557;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=157;QR=2963;RO=79;RPL=0;RPP=11.6962;RPPR=174.557;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=79;SRP=174.557;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:34:34,0:34:1264:0:0:0,-10.235,-114.052 0|1:25:20,2:20:755:2:79:-0.510278,0,-61.3275 0|1:9:6,2:6:233:2:78:-4.81201,0,-18.8078 0|0:19:19,0:19:711:0:0:0,-5.71957,-64.3184 dDocent_Contig_4562 91 . G A 2043.66 . AB=0.601351;ABP=16.2152;AC=4;AF=0.5;AN=8;AO=89;CIGAR=1X;DP=148;DPB=148;DPRA=0;EPP=196.271;EPPR=128.956;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.931034;PAO=0;PQA=0;PQR=0;PRO=0;QA=2832;QR=1912;RO=58;RPL=89;RPP=196.271;RPPR=128.956;RPR=0;RUN=1;SAF=89;SAP=196.271;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:52:24,27:24:778:27:851:-61.4696,0,-54.9091 0/1:37:7,30:7:241:30:978:-77.1833,0,-10.8883 0/1:26:9,17:9:290:17:532:-40.3528,0,-18.5877 0/1:33:18,15:18:603:15:471:-32.758,0,-44.6522 dDocent_Contig_4563 21 . T C 4712.74 . AB=0.650888;ABP=36.4304;AC=5;AF=0.625;AN=8;AO=146;CIGAR=1X;DP=205;DPB=205;DPRA=0;EPP=320.045;EPPR=126.784;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5848;QR=2274;RO=57;RPL=0;RPP=320.045;RPPR=126.784;RPR=146;RUN=1;SAF=146;SAP=320.045;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:93:36,55:36:1419:55:2215:-171.752,0,-100.196 1/1:36:0,36:0:0:36:1437:-129.585,-10.8371,0 0/1:43:8,35:8:326:35:1397:-113.041,0,-16.7656 0/1:33:13,20:13:529:20:799:-62.294,0,-38.0223 dDocent_Contig_4564 107 . N A 63.6413 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=67;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:67:-6.36304,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_4565 192 . T G 201.784 . AB=0.15534;ABP=109.286;AC=2;AF=0.25;AN=8;AO=19;CIGAR=1X3M3D1M;DP=185;DPB=177.75;DPRA=0;EPP=44.2683;EPPR=350.446;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.947368;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=691;QR=6052;RO=160;RPL=19;RPP=44.2683;RPPR=350.446;RPR=0;RUN=1;SAF=0;SAP=44.2683;SAR=19;SRF=0;SRP=350.446;SRR=160;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:54:39,11,3:39:1470:11,3:398,111:-20.7516,0,-117.166,-23.4085,-111.397,-142.976 0|1:49:44,5,0:44:1679:5,0:191,0:-2.80819,0,-136.622,-16.0535,-138.128,-153.799 0|0:42:39,1,0:39:1478:1,0:25,0:0,-9.74133,-130.883,-11.7402,-131.184,-133.13 0|0:40:38,2,0:38:1425:2,0:77,0:0,-4.73206,-121.217,-11.4391,-121.819,-128.142 dDocent_Contig_4566 16 . G C 10069.8 . AB=0.830189;ABP=153.579;AC=6;AF=0.75;AN=8;AO=299;CIGAR=1X;DP=332;DPB=332;DPRA=0;EPP=652.281;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=59.7291;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.979933;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=12013;QR=1286;RO=33;RPL=0;RPP=652.281;RPPR=74.6689;RPR=299;RUN=1;SAF=299;SAP=652.281;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:95:1,94:1:32:94:3812:-337.482,-25.3985,0 0/1:101:17,84:17:658:84:3361:-272.134,0,-29.1424 1/1:78:5,73:5:192:73:2931:-246.228,-5.83563,0 0/1:58:10,48:10:404:48:1909:-154.538,0,-19.2607 dDocent_Contig_4567 9 . T C 3332.92 . AB=0.574257;ABP=12.6852;AC=4;AF=0.5;AN=8;AO=116;CIGAR=1X;DP=202;DPB=202;DPRA=0;EPP=254.901;EPPR=189.757;GTI=0;LEN=1;MEANALT=1;MQM=59.8879;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.982759;PAIREDR=0.94186;PAO=0;PQA=0;PQR=0;PRO=0;QA=4448;QR=3271;RO=86;RPL=0;RPP=254.901;RPPR=189.757;RPR=116;RUN=1;SAF=116;SAP=254.901;SAR=0;SRF=86;SRP=189.757;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:64:37,27:37:1382:27:1026:-73.3511,0,-105.389 0/1:45:17,28:17:659:28:1080:-83.9583,0,-46.1008 0/1:51:19,32:19:727:32:1236:-96.1792,0,-50.4083 0/1:42:13,29:13:503:29:1106:-87.2013,0,-32.975 dDocent_Contig_4568 10 . G A 21775.1 . AB=0.0867725;ABP=1404.61;AC=1;AF=0.125;AN=8;AO=82;CIGAR=3X3M;DP=945;DPB=945;DPRA=0;EPP=181.071;EPPR=118.098;GTI=0;LEN=1;MEANALT=7.25;MQM=57.8415;MQMR=60;NS=4;NUMALT=4;ODDS=0;PAIRED=0.341463;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3256;QR=2083;RO=53;RPL=0;RPP=181.071;RPPR=118.098;RPR=82;RUN=1;SAF=82;SAP=181.071;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:254:13,29,13,155,31:13:517:29,13,155,31:1139,511,6129,1222:-556.905,-467.141,-500.978,-518.793,-467.684,-557.447,-57.8632,-6.75418,-58.4062,-53.771,-460.387,-409.277,-460.93,0,-493.622 0|0:282:33,30,13,169,32:33:1288:30,13,169,32:1201,504,6686,1275:-539.742,-450.739,-547.582,-508.276,-515.213,-610.236,0,-6.93468,-64.4733,-54.9986,-444.994,-451.931,-509.468,-1.18999,-541.235 0|0:260:5,35,8,187,5:5:199:35,8,187,5:1368,316,7427,197:-705.773,-594.822,-600.672,-681.275,-585.205,-695.253,-96.0707,0,-86.4535,-56.1646,-691.376,-595.306,-681.759,-96.5554,-706.257 0|0:149:2,26,0,93,14:2:79:26,0,93,14:1040,0,3692,562:-382.482,-297.414,-296.089,-383.084,-303.915,-389.585,-79.1738,0,-85.6749,-57.6791,-336.878,-257.709,-343.379,-39.4665,-339.164 dDocent_Contig_4569 45 . T C 7975.72 . AB=0.71374;ABP=106.976;AC=5;AF=0.625;AN=8;AO=252;CIGAR=1X;DP=331;DPB=331;DPRA=0;EPP=550.221;EPPR=174.557;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=9959;QR=3152;RO=79;RPL=0;RPP=550.221;RPPR=174.557;RPR=252;RUN=1;SAF=252;SAP=550.221;SAR=0;SRF=79;SRP=174.557;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:148:43,105:43:1705:105:4128:-326.953,0,-109.127 0/1:58:13,45:13:524:45:1764:-141.522,0,-30.0479 1/1:69:4,65:4:163:65:2610:-219.966,-5.71264,0 0/1:56:19,37:19:760:37:1457:-114.529,0,-51.8634 dDocent_Contig_4570 9 . T C 3199.07 . AB=0.420495;ABP=18.5482;AC=4;AF=0.5;AN=8;AO=119;CIGAR=1X;DP=283;DPB=283;DPRA=0;EPP=261.416;EPPR=359.132;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.94958;PAIREDR=0.896341;PAO=0;PQA=0;PQR=0;PRO=0;QA=4570;QR=6297;RO=164;RPL=0;RPP=261.416;RPPR=359.132;RPR=119;RUN=1;SAF=119;SAP=261.416;SAR=0;SRF=164;SRP=359.132;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:88:60,28:60:2322:28:1075:-70.5634,0,-182.701 0/1:69:32,37:32:1221:37:1424:-107.667,0,-89.4137 0/1:88:48,40:48:1845:40:1536:-112.02,0,-139.808 0/1:38:24,14:24:909:14:535:-37.0547,0,-70.6839 dDocent_Contig_4572 15 . A G 324.121 . AB=0.295455;ABP=19.0002;AC=1;AF=0.125;AN=8;AO=13;CIGAR=1X;DP=109;DPB=109;DPRA=2.03077;EPP=31.2394;EPPR=211.472;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=519;QR=3789;RO=96;RPL=0;RPP=31.2394;RPPR=211.472;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=96;SRP=211.472;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:44:31,13:31:1196:13:519:-33.81,0,-94.6679 0/0:31:31,0:31:1246:0:0:0,-9.33193,-112.412 0/0:20:20,0:20:787:0:0:0,-6.0206,-71.1449 0/0:14:14,0:14:560:0:0:0,-4.21442,-50.7427 dDocent_Contig_4573 107 . N C 72.5854 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=2;CIGAR=1X1M1X1M1X2M1X2M1I1X;DP=3;DPB=3.18182;DPRA=2;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=72;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. 1|1:2:0,2:0:0:2:72:-6.65513,-0.60206,0 1|1:1:0,0:0:0:0:0:0,0,0 dDocent_Contig_4574 10 . G A 214.975 . AB=0.116667;ABP=232.752;AC=1;AF=0.125;AN=8;AO=21;CIGAR=1X;DP=447;DPB=447;DPRA=2.02247;EPP=48.6112;EPPR=928.058;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=853;QR=17170;RO=426;RPL=0;RPP=48.6112;RPPR=928.058;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=426;SRP=928.058;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:180:159,21:159:6413:21:853:-22.8954,0,-522.693 0/0:97:97,0:97:3916:0:0:0,-29.1999,-352.408 0/0:97:97,0:97:3922:0:0:0,-29.1999,-352.95 0/0:73:73,0:73:2919:0:0:0,-21.9752,-262.797 dDocent_Contig_4575 118 . T A 2435.03 . AB=0.481132;ABP=3.66584;AC=4;AF=0.5;AN=8;AO=102;CIGAR=1X;DP=212;DPB=212;DPRA=0;EPP=224.5;EPPR=241.872;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3483;QR=3777;RO=110;RPL=0;RPP=224.5;RPPR=241.872;RPR=102;RUN=1;SAF=0;SAP=224.5;SAR=102;SRF=0;SRP=241.872;SRR=110;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:49:29,20:29:995:20:689:-47.5806,0,-75.1107 0/1:43:25,18:25:861:18:601:-41.4599,0,-64.8621 0/1:70:31,39:31:1054:39:1325:-98.4743,0,-74.0953 0/1:50:25,25:25:867:25:868:-63.3864,0,-63.2962 dDocent_Contig_4576 34 . A G 343.72 . AB=0.137056;ABP=228.414;AC=2;AF=0.25;AN=8;AO=35;CIGAR=1X;DP=393;DPB=393;DPRA=0;EPP=79.0118;EPPR=780.397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1387;QR=14404;RO=358;RPL=0;RPP=79.0118;RPPR=780.397;RPR=35;RUN=1;SAF=35;SAP=79.0118;SAR=0;SRF=358;SRP=780.397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:147:142,5:142:5724:5:200:0,-25.8719,-496.573 0/1:118:104,14:104:4199:14:545:-13.8643,0,-342.337 0/1:79:66,13:66:2641:13:526:-23.9056,0,-214.035 0/0:49:46,3:46:1840:3:116:0,-3.93419,-154.988 dDocent_Contig_4578 23 . A T 613.707 . AB=0.44;ABP=4.57376;AC=2;AF=0.25;AN=8;AO=22;CIGAR=1X;DP=77;DPB=77;DPRA=1.85185;EPP=50.7827;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=879;QR=2182;RO=55;RPL=0;RPP=50.7827;RPPR=122.441;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:20:20,0:20:788:0:0:0,-6.0206,-71.2329 0/1:23:19,4:19:754:4:161:-7.95158,0,-61.2558 0/1:27:9,18:9:366:18:718:-56.8171,0,-25.1773 0/0:7:7,0:7:274:0:0:0,-2.10721,-25.0231 dDocent_Contig_4579 9 . T C 14349.9 . AB=0.0727273;ABP=351.867;AC=8;AF=1;AN=8;AO=16;CIGAR=1X1M1X2M;DP=546;DPB=546;DPRA=0;EPP=37.7539;EPPR=72.4974;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=4;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=624;QR=1253;RO=32;RPL=0;RPP=37.7539;RPPR=72.4974;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:220:7,0,47,149,16:7:273:0,47,149,16:0,1839,5846,624:-607.427,-609.534,-631.974,-458.334,-480.775,-466.626,-128.761,-151.202,0,-106.349,-558.246,-580.687,-429.487,-99.9142,-575.87 1|1:166:10,3,27,125,0:10:389:3,27,125,0:119,1061,4906,0:-455.769,-448.983,-480.047,-371.51,-393.681,-395.349,-55.3037,-77.4734,0,-49.641,-458.779,-480.95,-403.477,-87.2698,-490.746 1|1:102:15,6,30,51,0:15:591:6,30,51,0:236,1164,2019,0:-208.662,-193.764,-240.581,-117.554,-146.763,-157.145,-46.9985,-76.2094,0,-80.27,-213.177,-242.387,-166.176,-95.6226,-261.8 1|1:58:0,5,14,39,0:0:0:5,14,39,0:189,550,1524,0:-170.533,-155.043,-153.538,-125.297,-109.807,-121.082,-45.2469,-29.7595,0,-33.5067,-170.533,-155.043,-125.297,-45.2469,-170.533 dDocent_Contig_4580 69 . T A 479.345 . AB=0.0254237;ABP=233.849;AC=0;AF=0;AN=8;AO=14;CIGAR=4M1X3M;DP=348;DPB=351.75;DPRA=1.7381;EPP=33.4109;EPPR=654.452;GTI=0;LEN=1;MEANALT=2.66667;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=528;QR=11195;RO=300;RPL=14;RPP=33.4109;RPPR=654.452;RPR=0;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=300;SRP=654.452;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:138:126,0,9:126:4659:0,9:0,334:0,-37.9298,-419.058,-10.5367,-391.738,-389.029 0|0:118:88,27,3:88:3313:27,3:937,116:-49.6335,0,-263.328,-66.5926,-261.928,-337.178 0|0:56:53,3,0:53:1992:3,0:98,0:0,-7.71439,-170.383,-15.9546,-171.286,-179.197 0|0:36:33,0,2:33:1231:0,2:0,78:0,-9.93399,-110.706,-3.50898,-104.293,-103.691 dDocent_Contig_4581 10 . T C 7289.29 . AB=0.67052;ABP=90.3964;AC=4;AF=0.5;AN=8;AO=232;CIGAR=2M1X;DP=346;DPB=341.667;DPRA=0;EPP=506.792;EPPR=222.329;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=2.77556e-17;PAIRED=0.991379;PAIREDR=0.990099;PAO=0;PQA=0;PQR=0;PRO=0;QA=9297;QR=3885;RO=101;RPL=0;RPP=506.792;RPPR=222.329;RPR=232;RUN=1;SAF=232;SAP=506.792;SAR=0;SRF=101;SRP=222.329;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:91:39,0,52:39:1502:0,52:0,2093:-161.155,-172.895,-296.218,0,-123.715,-108.062 0|1:121:12,0,109:12:457:0,109:0,4397:-359.231,-362.843,-400.326,0,-37.8659,-5.05368 0|1:88:25,8,55:25:955:8,55:311,2213:-174.864,-156.834,-232.774,0,-52.7901,-61.7928 0|1:46:25,5,16:25:971:5,16:172,594:-41.0778,-34.6458,-112.941,0,-65.8696,-75.0099 dDocent_Contig_4582 37 . A G 1407.52 . AB=0.505051;ABP=3.03223;AC=4;AF=0.5;AN=8;AO=50;CIGAR=1X;DP=99;DPB=99;DPRA=0;EPP=111.584;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=0.88;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1962;QR=1949;RO=49;RPL=0;RPP=111.584;RPPR=109.412;RPR=50;RUN=1;SAF=50;SAP=111.584;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:32:9,23:9:352:23:916:-73.1143,0,-22.4043 0/1:17:11,6:11:444:6:236:-16.492,0,-35.1983 0/1:26:12,14:12:483:14:535:-40.651,0,-35.9944 0/1:24:17,7:17:670:7:275:-17.8927,0,-53.4008 dDocent_Contig_4583 13 . A G 99.5414 . AB=0.125;ABP=51.8684;AC=3;AF=0.375;AN=8;AO=5;CIGAR=1X3M;DP=91;DPB=91;DPRA=2.22222;EPP=6.91895;EPPR=165.871;GTI=0;LEN=1;MEANALT=1.5;MQM=56.8;MQMR=59.0667;NS=4;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0.773333;PAO=0;PQA=0;PQR=0;PRO=0;QA=197;QR=2974;RO=75;RPL=0;RPP=13.8677;RPPR=165.871;RPR=5;RUN=1;SAF=4;SAP=6.91895;SAR=1;SRF=75;SRP=165.871;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:42:33,8,0:33:1323:8,0:309,0:-7.47832,0,-106.586,-17.4123,-108.994,-126.431 0|1:16:13,0,3:13:509:0,3:0,116:-5.86801,-9.7814,-51.5721,0,-42.174,-41.2709 0|1:24:20,2,2:20:787:2,2:76,81:-0.723321,-2.46083,-66.5502,0,-60.472,-64.2071 0|0:9:9,0,0:9:355:0,0:0,0:0,-2.70927,-32.3099,-2.70927,-32.3099,-32.3099 dDocent_Contig_4584 7 . T C 264.248 . AB=0.153846;ABP=30.0702;AC=1;AF=0.125;AN=8;AO=4;CIGAR=2X;DP=94;DPB=94;DPRA=2.88889;EPP=11.6962;EPPR=163.699;GTI=0;LEN=1;MEANALT=2;MQM=54.5;MQMR=43.2162;NS=4;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=152;QR=2851;RO=74;RPL=0;RPP=11.6962;RPPR=163.699;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=74;SRP=163.699;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:26:21,4,1:21:801:4,1:152,33:-6.20846,0,-51.8152,-10.5874,-51.0541,-63.1923 0|0:30:22,0,8:22:848:0,8:0,310:-15.647,-22.2697,-82.1972,0,-60.265,-57.8568 0|0:29:23,0,6:23:893:0,6:0,231:-9.96728,-16.891,-81.8587,0,-65.3092,-63.503 0|0:9:8,0,0:8:309:0,0:0,0:0,-2.40824,-22.3494,-2.40824,-22.3494,-22.3494 dDocent_Contig_4585 12 . T A 97.589 . AB=0.104575;ABP=210.805;AC=1;AF=0.125;AN=8;AO=26;CIGAR=1X2M1X;DP=415;DPB=415;DPRA=1.73134;EPP=59.4686;EPPR=845.542;GTI=0;LEN=1;MEANALT=1.33333;MQM=53.7692;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.807692;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1032;QR=15523;RO=388;RPL=0;RPP=59.4686;RPPR=845.542;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=388;SRP=845.542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:153:137,16:137:5475:16:632:-11.1568,0,-446.53 0|0:109:101,8:101:4058:8:319:0,-13.1214,-345.503 0|0:86:83,2:83:3317:2:81:0,-18.3096,-290.904 0|0:67:67,0:67:2673:0:0:0,-20.169,-240.697 dDocent_Contig_4586 205 . C A 264.006 . AB=0.191011;ABP=76.816;AC=2;AF=0.25;AN=8;AO=22;CIGAR=1X;DP=170;DPB=170;DPRA=0;EPP=50.7827;EPPR=324.388;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=804;QR=5394;RO=148;RPL=22;RPP=50.7827;RPPR=324.388;RPR=0;RUN=1;SAF=0;SAP=50.7827;SAR=22;SRF=0;SRP=324.388;SRR=148;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:43:38,5:38:1397:5:181:-3.6992,0,-113.082 0/0:43:41,2:41:1506:2:74:0,-5.91841,-128.805 0/1:46:34,12:34:1206:12:440:-26.0971,0,-94.9879 0/0:38:35,3:35:1285:3:109:0,-1.27114,-105.784 dDocent_Contig_4587 28 . C T 4061.09 . AB=0.356132;ABP=79.2372;AC=4;AF=0.5;AN=8;AO=151;CIGAR=1X;DP=424;DPB=424;DPRA=0;EPP=330.903;EPPR=593.651;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=59.5515;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.974265;PAO=0;PQA=0;PQR=0;PRO=0;QA=6000;QR=10662;RO=272;RPL=0;RPP=330.903;RPPR=593.651;RPR=151;RUN=1;SAF=151;SAP=330.903;SAR=0;SRF=272;SRP=593.651;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:90:37,53:37:1472:53:2136:-165.32,0,-105.529 0/1:106:91,15:91:3588:15:569:-19.6216,0,-291.055 0/1:127:86,40:86:3344:40:1574:-103.859,0,-261.78 0/1:101:58,43:58:2258:43:1721:-124.706,0,-172.78 dDocent_Contig_4589 110 . T C 1779.97 . AB=0.590164;ABP=11.625;AC=4;AF=0.5;AN=8;AO=72;CIGAR=1X;DP=122;DPB=122;DPRA=0;EPP=159.356;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2439;QR=1623;RO=50;RPL=0;RPP=159.356;RPPR=111.584;RPR=72;RUN=1;SAF=0;SAP=159.356;SAR=72;SRF=0;SRP=111.584;SRR=50;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:35:16,19:16:503:19:645:-47.8329,0,-35.0353 0/1:34:21,13:21:705:13:447:-30.3245,0,-53.5304 0/1:30:3,27:3:104:27:918:-73.9,0,-0.672191 0/1:23:10,13:10:311:13:429:-32.0045,0,-21.3682 dDocent_Contig_4590 94 . C A 10989.9 . AB=0.0721649;ABP=157.23;AC=0;AF=0;AN=8;AO=17;CIGAR=2M1X;DP=444;DPB=573.667;DPRA=1.84314;EPP=39.9253;EPPR=83.3548;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=582;QR=1275;RO=37;RPL=17;RPP=39.9253;RPPR=83.3548;RPR=0;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:163:4,153,6:4:125:153,6:5110,215:-448.491,-36.0332,0,-432.16,-28.4953,-440.396 0|0:97:21,69,7:21:728:69,7:2299,223:-179.762,0,-38.4238,-168.13,-41.2463,-225.2 0|0:116:9,103,4:9:318:103,4:3479,144:-284.375,-5.11202,0,-275.334,-19.2544,-300.03 0|0:68:3,64,0:3:104:64,0:2191,0:-187.76,-10.8075,0,-188.663,-19.2659,-197.117 dDocent_Contig_4592 107 . N G 66.4848 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=70;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:70:-6.6474,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_4593 1 . N G 114.653 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=123;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:123:-11.4648,-0.90309,0 dDocent_Contig_4594 13 . T C 498.444 . AB=0.126722;ABP=442.336;AC=2;AF=0.25;AN=8;AO=58;CIGAR=1X;DP=696;DPB=696;DPRA=0;EPP=128.956;EPPR=1388.41;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2281;QR=25649;RO=638;RPL=0;RPP=128.956;RPPR=1388.41;RPR=58;RUN=1;SAF=58;SAP=128.956;SAR=0;SRF=638;SRP=1388.41;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:270:234,36:234:9426:36:1404:-45.3368,0,-766.439 0/0:230:220,10:220:8816:10:400:0,-32.8774,-756.527 0/1:93:83,10:83:3329:10:395:-7.90553,0,-271.661 0/0:103:101,2:101:4078:2:82:0,-23.2264,-359.195 dDocent_Contig_4596 27 . T A 135.47 . AB=0.205882;ABP=28.557;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=147;DPB=147;DPRA=0.902655;EPP=18.2106;EPPR=307.016;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.971429;PAO=0;PQA=0;PQR=0;PRO=0;QA=279;QR=5597;RO=140;RPL=0;RPP=18.2106;RPPR=307.016;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=140;SRP=307.016;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:53:53,0:53:2120:0:0:0,-15.9546,-190.978 0/1:34:27,7:27:1080:7:279:-15.2459,0,-87.2515 0/0:20:20,0:20:798:0:0:0,-6.0206,-72.1349 0/0:40:40,0:40:1599:0:0:0,-12.0412,-144.136 dDocent_Contig_4597 61 . T A 4183.24 . AB=0.804196;ABP=117.946;AC=5;AF=0.625;AN=8;AO=131;CIGAR=1X;DP=159;DPB=159;DPRA=0;EPP=287.473;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5173;QR=1062;RO=28;RPL=131;RPP=287.473;RPPR=63.8115;RPR=0;RUN=1;SAF=131;SAP=287.473;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:67:15,52:15:558:52:2039:-163.537,0,-30.3781 0/1:42:4,38:4:158:38:1510:-123.499,0,-1.95739 0/1:34:9,25:9:346:25:994:-79.5211,0,-21.262 1/1:16:0,16:0:0:16:630:-57.0339,-4.81648,0 dDocent_Contig_4598 137 . C G 4664.07 . AB=0.639053;ABP=31.3936;AC=5;AF=0.625;AN=8;AO=183;CIGAR=1M3D4M1X2M1X;DP=245;DPB=199;DPRA=0;EPP=400.39;EPPR=133.299;GTI=0;LEN=1;MEANALT=1.5;MQM=40;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5954;QR=2023;RO=60;RPL=0;RPP=400.39;RPPR=133.299;RPR=183;RUN=1;SAF=0;SAP=400.39;SAR=183;SRF=0;SRP=133.299;SRR=60;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:81:18,62:18:606:62:1959:-147.708,0,-30.693 1|1:76:0,75:0:0:75:2492:-218.371,-22.5773,0 0|1:39:12,27:12:413:27:891:-66.5111,0,-25.7608 0|1:49:30,19:30:1004:19:612:-39.2139,0,-75.9162 dDocent_Contig_4599 27 . C T 7612.77 . AB=0.139241;ABP=449.536;AC=0;AF=0;AN=8;AO=55;CIGAR=2X;DP=395;DPB=395;DPRA=0;EPP=122.441;EPPR=209.3;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.936842;PAO=0;PQA=0;PQR=0;PRO=0;QA=2192;QR=3779;RO=95;RPL=0;RPP=122.441;RPPR=209.3;RPR=55;RUN=1;SAF=55;SAP=122.441;SAR=0;SRF=95;SRP=209.3;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:136:19,5,112:19:753:5,112:192,4438:-359.543,-349.502,-409.975,0,-46.2296,-28.2727 0|0:157:54,41,62:54:2139:41,62:1636,2426:-183.183,-64.7146,-228.418,0,-41.3197,-157.378 0|0:65:12,3,50:12:485:3,50:121,2012:-162.203,-155.841,-194.924,0,-30.0126,-24.9351 0|0:37:10,6,21:10:402:6,21:243,813:-63.7469,-46.7158,-78.0426,0,-13.0878,-26.8048 dDocent_Contig_4600 13 . T A 3937.86 . AB=0.509579;ABP=3.2183;AC=4;AF=0.5;AN=8;AO=133;CIGAR=1X;DP=261;DPB=261;DPRA=0;EPP=291.816;EPPR=280.959;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.954887;PAIREDR=0.8125;PAO=0;PQA=0;PQR=0;PRO=0;QA=5319;QR=5150;RO=128;RPL=0;RPP=291.816;RPPR=280.959;RPR=133;RUN=1;SAF=133;SAP=291.816;SAR=0;SRF=128;SRP=280.959;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:53:31,22:31:1241:22:882:-63.7344,0,-96.0018 0/1:64:38,26:38:1526:26:1032:-73.9063,0,-118.314 0/1:52:23,29:23:929:29:1147:-87.8571,0,-68.2601 0/1:92:36,56:36:1454:56:2258:-175.686,0,-103.411 dDocent_Contig_4601 13 . G A 9233.82 . AB=0.626283;ABP=70.4686;AC=4;AF=0.5;AN=8;AO=305;CIGAR=1X2M1X1M1X;DP=487;DPB=487;DPRA=0;EPP=665.309;EPPR=198.443;GTI=0;LEN=1;MEANALT=4;MQM=56.4721;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=11870;QR=3524;RO=90;RPL=0;RPP=665.309;RPPR=198.443;RPR=305;RUN=1;SAF=305;SAP=665.309;SAR=0;SRF=90;SRP=198.443;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:189:41,109,13,18:41:1609:109,13,18:4262,529,732:-334.438,0,-99.4994,-303.142,-88.6726,-431.545,-286.4,-71.9303,-375.078,-413.298 0|1:132:20,87,0,18:20:775:87,0,18:3379,0,713:-259.477,0,-37.465,-265.498,-63.6546,-329.156,-206.81,-4.96743,-270.47,-265.051 1|0:104:20,59,0,23:20:797:59,0,23:2293,0,910:-189.004,-9.24345,-57.1194,-195.024,-74.8802,-260.66,-120.143,0,-185.78,-178.856 0|1:62:9,50,0,2:9:343:50,0,2:1936,0,82:-147.861,0,-13.0731,-150.57,-28.1246,-178.703,-143.801,-21.3511,-171.934,-171.332 dDocent_Contig_4602 27 . A T 3742.04 . AB=0.57265;ABP=13.7377;AC=4;AF=0.5;AN=8;AO=134;CIGAR=1X;DP=234;DPB=234;DPRA=0;EPP=293.988;EPPR=220.158;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.1;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.98;PAO=0;PQA=0;PQR=0;PRO=0;QA=5010;QR=3965;RO=100;RPL=0;RPP=293.988;RPPR=220.158;RPR=134;RUN=1;SAF=134;SAP=293.988;SAR=0;SRF=100;SRP=220.158;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:88:42,46:42:1672:46:1748:-131.087,0,-124.217 0/1:71:26,45:26:1014:45:1661:-128.368,0,-66.0191 0/1:36:14,22:14:564:22:850:-65.9821,0,-40.2657 0/1:39:18,21:18:715:21:751:-56.1645,0,-52.9341 dDocent_Contig_4603 16 . A G 36.454 . AB=0.116279;ABP=58.0041;AC=1;AF=0.125;AN=8;AO=11;CIGAR=1X;DP=178;DPB=178;DPRA=4.61111;EPP=26.8965;EPPR=365.646;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.964072;PAO=0;PQA=0;PQR=0;PRO=0;QA=444;QR=6585;RO=167;RPL=0;RPP=26.8965;RPPR=365.646;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=167;SRP=365.646;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:79:75,4:75:2978:4:163:0,-8.72294,-253.062 0/0:44:42,2:42:1632:2:82:0,-5.46564,-139.324 0/1:43:38,5:38:1501:5:199:-5.34427,0,-122.381 0/0:12:12,0:12:474:0:0:0,-3.61236,-43.0091 dDocent_Contig_4604 12 . G C 14001 . AB=0.543735;ABP=17.0658;AC=4;AF=0.5;AN=8;AO=460;CIGAR=1X;DP=846;DPB=846;DPRA=0;EPP=1001.89;EPPR=839.027;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=5.55112e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=18474;QR=15395;RO=385;RPL=0;RPP=1001.89;RPPR=839.027;RPR=460;RUN=1;SAF=460;SAP=1001.89;SAR=0;SRF=385;SRP=839.027;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:207:93,113:93:3724:113:4535:-345.644,0,-272.744 0/1:227:103,124:103:4080:124:4973:-379.092,0,-298.838 0/1:226:100,126:100:4001:126:5055:-386.785,0,-292.039 0/1:186:89,97:89:3590:97:3911:-295.978,0,-267.115 dDocent_Contig_4605 15 . T C 512.665 . AB=0.231481;ABP=70.6476;AC=2;AF=0.25;AN=8;AO=34;CIGAR=1X;DP=268;DPB=268;DPRA=0;EPP=68.4099;EPPR=511.135;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.941176;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1285;QR=8747;RO=234;RPL=0;RPP=76.8404;RPPR=511.135;RPR=34;RUN=1;SAF=33;SAP=68.4099;SAR=1;SRF=234;SRP=511.135;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:65:48,17:48:1823:17:652:-39.4379,0,-144.748 0/0:68:66,2:66:2447:2:75:0,-13.3504,-213.301 0/0:92:85,7:85:3173:7:249:0,-4.95397,-262.987 0/1:43:35,8:35:1304:8:309:-15.2266,0,-104.698 dDocent_Contig_4606 67 . T C 131.062 . AB=0.151515;ABP=72.629;AC=1;AF=0.125;AN=8;AO=13;CIGAR=1X;DP=163;DPB=163;DPRA=1.31313;EPP=31.2394;EPPR=328.731;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=0.769231;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=498;QR=5614;RO=150;RPL=13;RPP=31.2394;RPPR=328.731;RPR=0;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=150;SRP=328.731;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:66:56,10:56:2105:10:378:-14.5041,0,-169.81 0/0:33:32,1:32:1222:1:41:0,-5.83942,-106.182 0/0:33:33,0:33:1243:0:0:0,-9.93399,-112.163 0/0:31:29,2:29:1044:2:79:0,-1.83469,-86.7557 dDocent_Contig_4607 58 . T G 1489.87 . AB=0.228188;ABP=194.246;AC=3;AF=0.375;AN=8;AO=72;CIGAR=1X;DP=349;DPB=349;DPRA=0;EPP=159.356;EPPR=604.508;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2859;QR=10882;RO=277;RPL=72;RPP=159.356;RPPR=604.508;RPR=0;RUN=1;SAF=72;SAP=159.356;SAR=0;SRF=277;SRP=604.508;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:92:70,22:70:2772:22:882:-51.9957,0,-221.908 0/1:112:85,27:85:3335:27:1081:-63.8612,0,-266.508 0/1:94:75,19:75:2934:19:739:-38.5281,0,-235.873 0/0:51:47,4:47:1841:4:157:0,-0.84356,-151.403 dDocent_Contig_4608 97 . A T 252.041 . AB=0.209877;ABP=62.2298;AC=1;AF=0.125;AN=8;AO=17;CIGAR=1X;DP=179;DPB=179;DPRA=2.47959;EPP=39.9253;EPPR=354.789;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=563;QR=5375;RO=162;RPL=17;RPP=39.9253;RPPR=354.789;RPR=0;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=162;SRP=354.789;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:81:64,17:64:2171:17:563:-26.6021,0,-171.277 0/0:49:49,0:49:1628:0:0:0,-14.7505,-146.803 0/0:24:24,0:24:762:0:0:0,-7.22472,-68.8771 0/0:25:25,0:25:814:0:0:0,-7.52575,-73.561 dDocent_Contig_4609 1 . N G 147.475 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=152;QR=0;RO=0;RPL=0;RPP=11.6962;RPPR=0;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:111:-10.3505,-0.90309,0 ./.:.:.:.:.:.:.:. 1/1:1:0,1:0:0:1:41:-4.09457,-0.30103,0 ./.:.:.:.:.:.:.:. dDocent_Contig_4610 1 . N G 72.1462 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=76;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:76:-7.21354,-0.60206,0 dDocent_Contig_4611 17 . T A 4910.38 . AB=0.478992;ABP=4.37888;AC=4;AF=0.5;AN=8;AO=171;CIGAR=1X;DP=357;DPB=357;DPRA=0;EPP=374.332;EPPR=406.904;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6722;QR=7412;RO=186;RPL=0;RPP=374.332;RPPR=406.904;RPR=171;RUN=1;SAF=171;SAP=374.332;SAR=0;SRF=186;SRP=406.904;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:95:45,50:45:1766:50:1968:-148.726,0,-130.565 0/1:97:32,65:32:1286:65:2553:-200.715,0,-86.803 0/1:80:57,23:57:2285:23:909:-58.0344,0,-181.73 0/1:85:52,33:52:2075:33:1292:-90.961,0,-161.347 dDocent_Contig_4612 121 . A G 2154.3 . AB=0.662921;ABP=23.5295;AC=5;AF=0.625;AN=8;AO=81;CIGAR=1X4M;DP=114;DPB=114;DPRA=0;EPP=178.9;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.987654;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2775;QR=1061;RO=31;RPL=0;RPP=178.9;RPPR=70.3259;RPR=81;RUN=1;SAF=0;SAP=178.9;SAR=81;SRF=0;SRP=70.3259;SRR=31;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:15:3,0,12:3:102:0,12:0,410:-32.7131,-33.6162,-41.8898,0,-8.61386,-5.0015 1|1:25:1,2,22:1:35:2,22:39,764:-65.6733,-63.0792,-65.325,-3.7233,-3.81804,0 0|1:37:16,0,21:16:548:0,21:0,722:-54.1619,-58.9784,-103.464,0,-44.829,-38.5073 0|1:37:11,0,26:11:376:0,26:0,879:-68.2798,-71.5911,-102.109,0,-30.8588,-23.032 dDocent_Contig_4613 72 . C A 1036.73 . AB=0.160944;ABP=468.32;AC=2;AF=0.25;AN=8;AO=82;CIGAR=1X;DP=652;DPB=652;DPRA=0;EPP=181.071;EPPR=1223.44;GTI=0;LEN=1;MEANALT=1;MQM=59.9756;MQMR=59.9947;NS=4;NUMALT=1;ODDS=0;PAIRED=0.97561;PAIREDR=0.942105;PAO=0;PQA=0;PQR=0;PRO=0;QA=3006;QR=20401;RO=570;RPL=82;RPP=181.071;RPPR=1240.75;RPR=0;RUN=1;SAF=82;SAP=181.071;SAR=0;SRF=568;SRP=1223.44;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:277:223,54:223:8033:54:1961:-93.3549,0,-639.528 0/1:189:168,21:168:6070:21:781:-13.7165,0,-489.431 0/0:107:104,3:104:3652:3:110:0,-21.9506,-318.591 0/0:79:75,4:75:2646:4:154:0,-9.54791,-224.128 dDocent_Contig_4614 23 . C T 73.4377 . AB=0.133333;ABP=55.5599;AC=3;AF=0.375;AN=8;AO=6;CIGAR=1X;DP=62;DPB=62;DPRA=0.882353;EPP=16.0391;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=245;QR=2219;RO=56;RPL=0;RPP=16.0391;RPPR=124.613;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:12,1:12:468:1:41:-0.181177,0,-38.549 0/0:17:17,0:17:662:0:0:0,-5.11751,-59.9076 0/1:20:16,4:16:641:4:163:-9.03783,0,-52.0039 0/1:12:11,1:11:448:1:41:-0.482207,0,-37.0634 dDocent_Contig_4615 107 . N A 65.5375 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=69;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:69:-6.55266,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_4616 58 . T C 1588.91 . AB=0.44186;ABP=6.79775;AC=4;AF=0.5;AN=8;AO=57;CIGAR=1X;DP=129;DPB=129;DPRA=0;EPP=126.784;EPPR=159.356;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.684211;PAIREDR=0.972222;PAO=0;PQA=0;PQR=0;PRO=0;QA=2264;QR=2740;RO=72;RPL=57;RPP=126.784;RPPR=159.356;RPR=0;RUN=1;SAF=57;SAP=126.784;SAR=0;SRF=72;SRP=159.356;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:12,12:12:463:12:485:-36.7742,0,-34.7957 0/1:48:30,18:30:1126:18:710:-49.776,0,-87.1792 0/1:39:19,20:19:729:20:787:-59.4043,0,-54.1938 0/1:18:11,7:11:422:7:282:-20.3342,0,-32.9124 dDocent_Contig_4617 154 . G A 33.521 . AB=0.142857;ABP=26.2761;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=50;DPB=50;DPRA=2.17241;EPP=9.52472;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=1787;RO=46;RPL=0;RPP=9.52472;RPPR=102.898;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=102.898;SRR=46;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:12:12,0:12:455:0:0:0,-3.61236,-41.2846 0/1:21:18,3:18:700:3:122:-5.05086,0,-56.9885 0/0:6:6,0:6:243:0:0:0,-1.80618,-22.2482 0/0:11:10,0:10:389:0:0:0,-3.0103,-35.2543 dDocent_Contig_4619 66 . A T 1986.55 . AB=0.165871;ABP=815.628;AC=4;AF=0.5;AN=8;AO=139;CIGAR=1X;DP=838;DPB=838;DPRA=0;EPP=304.845;EPPR=1520.87;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.928058;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5079;QR=26768;RO=699;RPL=139;RPP=304.845;RPPR=1520.87;RPR=0;RUN=1;SAF=139;SAP=304.845;SAR=0;SRF=699;SRP=1520.87;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:268:236,32:236:9085:32:1175:-25.3818,0,-736.592 0/1:258:229,29:229:8680:29:1065:-18.4976,0,-703.237 0/1:189:134,55:134:5183:55:1998:-123.187,0,-409.504 0/1:123:100,23:100:3820:23:841:-38.9865,0,-306.849 dDocent_Contig_4620 80 . G A 378.948 . AB=0.132653;ABP=117.877;AC=3;AF=0.375;AN=8;AO=13;CIGAR=1X1M;DP=105;DPB=105;DPRA=4.66667;EPP=31.2394;EPPR=178.9;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=504;QR=2936;RO=81;RPL=13;RPP=31.2394;RPPR=178.9;RPR=0;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=81;SRP=178.9;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:7:7,0,0:7:259:0,0:0,0:0,-2.10721,-23.6661,-2.10721,-23.6661,-23.6661 0|1:24:18,0,6:18:644:0,6:0,234:-14.2064,-19.6249,-72.1114,0,-52.8682,-51.062 0|1:50:38,10,2:38:1403:10,2:367,76:-18.55,0,-111.735,-23.7541,-108.512,-137.909 0|1:24:18,1,5:18:630:1,5:37,194:-10.5364,-12.9309,-63.8546,0,-48.2074,-49.7303 dDocent_Contig_4621 199 . G T 527.479 . AB=0.126506;ABP=204.146;AC=1;AF=0.125;AN=8;AO=21;CIGAR=2X;DP=252;DPB=252;DPRA=0.643411;EPP=48.6112;EPPR=454.677;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=796;QR=7808;RO=208;RPL=21;RPP=48.6112;RPPR=454.677;RPR=0;RUN=1;SAF=0;SAP=48.6112;SAR=21;SRF=0;SRP=454.677;SRR=208;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:86:80,0,6:80:3021:0,6:0,230:0,-24.0824,-271.682,-4.82225,-252.804,-250.998 0|1:106:88,16,2:88:3277:16,2:604,78:-23.0006,0,-263.387,-43.0781,-261.792,-310.693 0|0:39:28,1,10:28:1071:1,10:39,381:-22.8145,-28.0366,-115.622,0,-84.6723,-84.8681 0|0:21:12,4,5:12:439:4,5:153,194:-12.3307,-3.3902,-38.0398,0,-23.2974,-34.3517 dDocent_Contig_4622 12 . A T 2651.82 . AB=0.492063;ABP=3.1137;AC=4;AF=0.5;AN=8;AO=93;CIGAR=1X;DP=189;DPB=189;DPRA=0;EPP=204.957;EPPR=209.3;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.817204;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3645;QR=3718;RO=95;RPL=0;RPP=204.957;RPPR=209.3;RPR=93;RUN=1;SAF=93;SAP=204.957;SAR=0;SRF=95;SRP=209.3;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:50:14,36:14:541:36:1418:-112.83,0,-33.9743 0/1:54:31,22:31:1223:22:858:-61.4654,0,-94.2833 0/1:69:44,25:44:1721:25:980:-67.7355,0,-134.345 0/1:16:6,10:6:233:10:389:-30.549,0,-16.5219 dDocent_Contig_4623 93 . A G 109.534 . AB=0.124088;ABP=171.165;AC=2;AF=0.25;AN=8;AO=17;CIGAR=1X;DP=213;DPB=213;DPRA=1.80263;EPP=39.9253;EPPR=428.619;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=0.964286;PAO=0;PQA=0;PQR=0;PRO=0;QA=610;QR=6964;RO=196;RPL=17;RPP=39.9253;RPPR=428.619;RPR=0;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=196;SRP=428.619;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:44:44,0:44:1578:0:0:0,-13.2453,-142.309 0/1:111:98,13:98:3495:13:466:-8.86442,0,-281.345 0/1:26:22,4:22:751:4:144:-5.48684,0,-60.0732 0/0:32:32,0:32:1140:0:0:0,-9.63296,-102.908 dDocent_Contig_4624 106 . N T 37.7572 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=2X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=20;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=70;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:2:0,2:0:0:2:70:-3.77456,-0.60206,0 .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. dDocent_Contig_4625 12 . C T 14699.9 . AB=0.795148;ABP=283.727;AC=5;AF=0.625;AN=8;AO=472;CIGAR=1X;DP=562;DPB=562;DPRA=0;EPP=1027.95;EPPR=198.443;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.997881;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=18197;QR=3552;RO=90;RPL=0;RPP=1027.95;RPPR=198.443;RPR=472;RUN=1;SAF=472;SAP=1027.95;SAR=0;SRF=90;SRP=198.443;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:139:34,105:34:1312:105:4049:-322.616,0,-76.4924 1/1:191:14,177:14:560:177:6834:-564.134,-6.75512,0 0/1:170:36,134:36:1449:134:5152:-412.474,0,-79.4806 0/1:62:6,56:6:231:56:2162:-176.126,0,-2.49088 dDocent_Contig_4626 90 . T A 101.562 . AB=0.194444;ABP=32.2045;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=100;DPB=100;DPRA=1.6875;EPP=18.2106;EPPR=204.957;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=245;QR=3151;RO=93;RPL=7;RPP=18.2106;RPPR=204.957;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=93;SRP=204.957;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:29,7:29:993:7:245:-11.5541,0,-78.842 0/0:33:33,0:33:1109:0:0:0,-9.93399,-100.109 0/0:20:20,0:20:690:0:0:0,-6.0206,-62.4223 0/0:11:11,0:11:359:0:0:0,-3.31133,-32.6252 dDocent_Contig_4628 79 . A T 365.714 . AB=0.196429;ABP=92.6611;AC=2;AF=0.25;AN=8;AO=23;CIGAR=1X;DP=182;DPB=182;DPRA=1.83333;EPP=52.9542;EPPR=348.274;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.8302;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=0.993711;PAO=0;PQA=0;PQR=0;PRO=0;QA=848;QR=5720;RO=159;RPL=23;RPP=52.9542;RPPR=348.274;RPR=0;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=159;SRP=348.274;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:63:51,12:51:1813:12:444:-21.3414,0,-144.479 0/0:42:41,1:41:1496:1:37:0,-8.94543,-131.233 0/1:49:39,10:39:1424:10:367:-18.6279,0,-113.214 0/0:28:28,0:28:987:0:0:0,-8.42884,-89.1365 dDocent_Contig_4629 2 . A T 355.813 . AB=0.382979;ABP=8.60069;AC=1;AF=0.125;AN=8;AO=18;CIGAR=1X;DP=148;DPB=148;DPRA=1.39604;EPP=42.0968;EPPR=285.302;GTI=0;LEN=1;MEANALT=1;MQM=35.6111;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=611;QR=4757;RO=130;RPL=0;RPP=42.0968;RPPR=285.302;RPR=18;RUN=1;SAF=0;SAP=42.0968;SAR=18;SRF=130;SRP=285.302;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:51:51,0:51:1861:0:0:0,-15.3525,-167.764 0/0:41:41,0:41:1492:0:0:0,-12.3422,-134.572 0/1:47:29,18:29:1071:18:611:-37.2803,0,-82.5547 0/0:9:9,0:9:333:0:0:0,-2.70927,-30.3222 dDocent_Contig_4630 12 . G C 9020.96 . AB=0.770115;ABP=58.1457;AC=6;AF=0.75;AN=8;AO=264;CIGAR=1X;DP=290;DPB=290;DPRA=0;EPP=576.279;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=10593;QR=1043;RO=26;RPL=0;RPP=576.279;RPPR=59.4686;RPR=264;RUN=1;SAF=264;SAP=576.279;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:109:0,109:0:0:109:4338:-390.37,-32.8123,0 1/1:94:6,88:6:242:88:3558:-298.073,-6.13929,0 0/1:55:11,44:11:439:44:1779:-143.761,0,-23.308 0/1:32:9,23:9:362:23:918:-73.2896,0,-23.3101 dDocent_Contig_4631 131 . C T 304.319 . AB=0.214286;ABP=72.4974;AC=4;AF=0.5;AN=8;AO=21;CIGAR=1X;DP=98;DPB=98;DPRA=0;EPP=48.6112;EPPR=170.214;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=732;QR=2617;RO=77;RPL=0;RPP=48.6112;RPPR=170.214;RPR=21;RUN=1;SAF=0;SAP=48.6112;SAR=21;SRF=0;SRP=170.214;SRR=77;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:18,10:18:613:10:331:-21.6774,0,-47.0624 0/1:18:14,4:14:457:4:148:-8.26343,0,-36.024 0/1:25:21,4:21:721:4:142:-5.60272,0,-57.6835 0/1:27:24,3:24:826:3:111:-2.22611,0,-66.5288 dDocent_Contig_4632 38 . T A 372.887 . AB=0.173913;ABP=109.224;AC=1;AF=0.125;AN=8;AO=24;CIGAR=1X;DP=389;DPB=389;DPRA=1.46759;EPP=55.1256;EPPR=795.598;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=975;QR=14563;RO=365;RPL=0;RPP=55.1256;RPPR=795.598;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=365;SRP=795.598;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:115:95,20:95:3792:20:811:-38.6866,0,-306.653 0/0:128:127,1:127:5093:1:41:0,-34.4373,-454.133 0/0:72:72,0:72:2840:0:0:0,-21.6742,-255.7 0/0:74:71,3:71:2838:3:123:0,-10.8114,-244.053 dDocent_Contig_4633 63 . G A 77.5352 . AB=0.192308;ABP=24.391;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=102;DPB=102;DPRA=1.02632;EPP=13.8677;EPPR=213.643;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.979381;PAO=0;PQA=0;PQR=0;PRO=0;QA=188;QR=3738;RO=97;RPL=5;RPP=13.8677;RPPR=213.643;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=97;SRP=213.643;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:46:46,0:46:1791:0:0:0,-13.8474,-161.422 0/1:26:21,5:21:768:5:188:-9.45248,0,-61.5973 0/0:22:22,0:22:867:0:0:0,-6.62266,-78.3423 0/0:8:8,0:8:312:0:0:0,-2.40824,-28.4407 dDocent_Contig_4634 29 . T C 3236.43 . AB=0.513889;ABP=3.37221;AC=4;AF=0.5;AN=8;AO=111;CIGAR=1X;DP=216;DPB=216;DPRA=0;EPP=244.044;EPPR=231.015;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4388;QR=3974;RO=105;RPL=0;RPP=244.044;RPPR=231.015;RPR=111;RUN=1;SAF=111;SAP=244.044;SAR=0;SRF=105;SRP=231.015;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:73:62,11:62:2375:11:436:-17.6192,0,-191.969 0/1:69:16,53:16:577:53:2105:-168.862,0,-31.4768 0/1:55:17,38:17:637:38:1485:-117.335,0,-41.0979 0/1:19:10,9:10:385:9:362:-27.2246,0,-29.2867 dDocent_Contig_4635 14 . A G 4127.4 . AB=0.156463;ABP=304.387;AC=1;AF=0.125;AN=8;AO=46;CIGAR=1X3M2D9M;DP=294;DPB=279;DPRA=0;EPP=102.898;EPPR=191.928;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=4;NUMALT=4;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1834;QR=3437;RO=87;RPL=0;RPP=102.898;RPPR=191.928;RPR=46;RUN=1;SAF=46;SAP=102.898;SAR=0;SRF=87;SRP=191.928;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:75:9,10,46,9,1:9:353:10,46,9,1:398,1784,351,40:-147.586,-117.522,-143.542,-3.74415,0,-18.926,-121.447,-117.705,-3.92723,-147.768,-147,-143.257,-29.4781,-147.182,-175.729 0|0:127:42,15,67,0,2:42:1652:15,67,0,2:590,2572,0,82:-198.438,-162.552,-293.929,0,-87.3602,-115.719,-211.082,-298.445,-135.888,-346.974,-204.313,-291.676,-129.12,-340.205,-339.603 0|0:46:15,14,15,0,0:15:596:14,15,0,0:562,601,0,0:-45.0002,-3.20782,-48.0623,0,-2.75958,-44.5532,-49.5156,-52.2767,-49.0687,-98.5838,-49.5156,-52.2767,-49.0687,-98.5838,-98.5838 0|0:46:21,7,11,0,6:21:836:7,11,0,6:284,431,0,237:-29.114,-12.0105,-78.7455,0,-45.415,-65.5269,-35.4356,-80.8527,-68.8382,-104.276,-15.9341,-61.3508,-49.337,-84.7741,-82.9679 dDocent_Contig_4636 19 . T G 743.208 . AB=0.107266;ABP=390.186;AC=4;AF=0.5;AN=8;AO=31;CIGAR=1X8M;DP=289;DPB=303.222;DPRA=0;EPP=70.3259;EPPR=454.677;GTI=0;LEN=1;MEANALT=3.25;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1249;QR=8265;RO=208;RPL=0;RPP=70.3259;RPPR=454.677;RPR=31;RUN=1;SAF=31;SAP=70.3259;SAR=0;SRF=208;SRP=454.677;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:103:85,1,3,14:85:3385:1,3,14:40,119,562:-20.7222,-43.0147,-321.45,-36.5148,-311.956,-314.348,0,-275.444,-268.944,-274.525 0|1:137:85,14,25,12:85:3376:14,25,12:539,986,485:-55.5365,-36.8767,-310.591,0,-233.682,-270.406,-41.1363,-274.82,-237.946,-315.457 0|1:28:22,1,2,3:22:871:1,2,3:40,76,121:-3.35965,-6.68623,-78.0705,-3.75725,-72.1402,-74.8334,0,-68.3965,-65.4606,-70.7887 0|1:21:16,0,2,2:16:633:0,2,2:0,76,81:-1.86996,-6.68644,-58.7821,-0.463206,-52.5512,-51.9491,0,-52.1019,-45.8711,-51.4999 dDocent_Contig_4637 14 . C T 3286.37 . AB=0.5311;ABP=4.76618;AC=4;AF=0.5;AN=8;AO=111;CIGAR=1X;DP=209;DPB=209;DPRA=0;EPP=244.044;EPPR=215.815;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.927928;PAIREDR=0.918367;PAO=0;PQA=0;PQR=0;PRO=0;QA=4420;QR=3897;RO=98;RPL=0;RPP=244.044;RPPR=215.815;RPR=111;RUN=1;SAF=111;SAP=244.044;SAR=0;SRF=98;SRP=215.815;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:58:31,27:31:1246:27:1077:-79.7615,0,-94.9495 0/1:77:34,43:34:1350:43:1699:-129.956,0,-98.5852 0/1:40:12,28:12:476:28:1117:-88.7758,0,-31.1451 0/1:34:21,13:21:825:13:527:-37.5421,0,-64.3234 dDocent_Contig_4638 79 . G A 2358.43 . AB=0.249651;ABP=393.333;AC=4;AF=0.5;AN=8;AO=179;CIGAR=1X;DP=717;DPB=717;DPRA=0;EPP=391.704;EPPR=1171.26;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5089;QR=15314;RO=538;RPL=179;RPP=391.704;RPPR=1171.26;RPR=0;RUN=1;SAF=179;SAP=391.704;SAR=0;SRF=538;SRP=1171.26;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:308:204,104:204:5804:104:2978:-175.552,0,-429.862 0/1:161:134,27:134:3818:27:763:-20.4773,0,-295.392 0/1:102:75,27:75:2153:27:748:-36.8834,0,-163.326 0/1:146:125,21:125:3539:21:600:-10.3281,0,-274.805 dDocent_Contig_4640 98 . N A 4043.46 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=139;CIGAR=1X;DP=139;DPB=139;DPRA=0;EPP=304.845;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=0.928058;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=4473;QR=0;RO=0;RPL=139;RPP=304.845;RPPR=0;RPR=0;RUN=1;SAF=139;SAP=304.845;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:28:0,28:0:0:28:902:-81.4781,-8.42884,0 1/1:67:0,67:0:0:67:2161:-194.761,-20.169,0 1/1:22:0,22:0:0:22:718:-64.9251,-6.62266,0 1/1:22:0,22:0:0:22:692:-62.5802,-6.62266,0 dDocent_Contig_4641 36 . T G 8313.44 . AB=0.691011;ABP=59.4198;AC=5;AF=0.625;AN=8;AO=253;CIGAR=1X;DP=308;DPB=308;DPRA=0;EPP=552.393;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.909091;PAO=0;PQA=0;PQR=0;PRO=0;QA=9886;QR=2178;RO=55;RPL=0;RPP=552.393;RPPR=122.441;RPR=253;RUN=1;SAF=253;SAP=552.393;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:130:0,130:0:0:130:5066:-455.833,-39.1339,0 0/1:80:23,57:23:919:57:2242:-177.861,0,-58.9324 0/1:56:22,34:22:874:34:1339:-103.911,0,-62.1129 0/1:42:10,32:10:385:32:1239:-99.1376,0,-22.3571 dDocent_Contig_4642 32 . C A 2624.19 . AB=0.581699;ABP=11.8807;AC=4;AF=0.5;AN=8;AO=89;CIGAR=1X;DP=153;DPB=153;DPRA=0;EPP=196.271;EPPR=141.985;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.988764;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3496;QR=2490;RO=64;RPL=0;RPP=196.271;RPPR=141.985;RPR=89;RUN=1;SAF=89;SAP=196.271;SAR=0;SRF=64;SRP=141.985;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:54:21,33:21:822:33:1304:-101.366,0,-58.0366 0/1:31:13,18:13:503:18:719:-55.7043,0,-36.2829 0/1:42:19,23:19:730:23:882:-67.0464,0,-53.378 0/1:26:11,15:11:435:15:591:-45.701,0,-31.6767 dDocent_Contig_4643 35 . T G 6569.08 . AB=0.648318;ABP=65.4916;AC=4;AF=0.5;AN=8;AO=212;CIGAR=1X;DP=327;DPB=327;DPRA=0;EPP=463.362;EPPR=252.73;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.1913;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.93913;PAO=0;PQA=0;PQR=0;PRO=0;QA=8467;QR=4604;RO=115;RPL=0;RPP=463.362;RPPR=252.73;RPR=212;RUN=1;SAF=212;SAP=463.362;SAR=0;SRF=115;SRP=252.73;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:80:19,61:19:764:61:2424:-194.221,0,-44.6833 0/1:94:35,59:35:1414:59:2375:-185.604,0,-99.1482 0/1:89:40,49:40:1594:49:1949:-148.817,0,-116.674 0/1:64:21,43:21:832:43:1719:-135.664,0,-55.9263 dDocent_Contig_4644 33 . A G 13559.9 . AB=0.092145;ABP=959.508;AC=4;AF=0.5;AN=8;AO=61;CIGAR=3X1M3X;DP=662;DPB=662;DPRA=0;EPP=135.47;EPPR=263.587;GTI=0;LEN=1;MEANALT=5;MQM=58.7377;MQMR=60;NS=4;NUMALT=3;ODDS=1.11022e-16;PAIRED=1;PAIREDR=0.983333;PAO=0;PQA=0;PQR=0;PRO=0;QA=2377;QR=4036;RO=120;RPL=0;RPP=135.47;RPPR=263.587;RPR=61;RUN=1;SAF=61;SAP=135.47;SAR=0;SRF=0;SRP=263.587;SRR=120;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:236:37,0,168,19:37:1232:0,168,19:0,6492,729:-514.662,-525.8,-625.499,0,-99.6908,-49.1178,-465.979,-565.678,-39.8561,-559.959 0|1:227:48,13,135,30:48:1637:13,135,30:513,5258,1180:-416.972,-389.518,-518.424,0,-90.8968,-92.1661,-334.442,-425.356,-35.8121,-458.23 0|1:122:26,4,82,8:26:870:4,82,8:159,3143,311:-250.092,-245.084,-314.317,0,-57.5775,-45.7324,-232.369,-289.97,-44.8573,-300.398 0|1:77:9,2,59,4:9:297:2,59,4:79,2248,157:-181.665,-177.995,-201.4,0,-17.6008,-6.22299,-171.463,-189.09,-11.0636,-194.265 dDocent_Contig_4645 120 . T C 133.056 . AB=0.16;ABP=28.1125;AC=3;AF=0.375;AN=8;AO=4;CIGAR=1X3M;DP=74;DPB=74;DPRA=1;EPP=11.6962;EPPR=137.642;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=140;QR=2147;RO=62;RPL=0;RPP=11.6962;RPPR=137.642;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=137.642;SRR=62;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:25:25,0,0:25:876:0,0:0,0:0,-7.52575,-79.1587,-7.52575,-79.1587,-79.1587 0|1:25:19,1,4:19:645:1,4:35,140:-5.76466,-8.62717,-60.6716,0,-49.5777,-51.2224 0|1:13:11,2,0:11:381:2,0:71,0:-2.82867,0,-30.7099,-6.14,-31.312,-37.0985 0|1:11:7,4,0:7:245:4,0:145,0:-10.0944,0,-19.0799,-12.2016,-20.284,-32.1278 dDocent_Contig_4647 25 . T C 236.981 . AB=0.2;ABP=49.9141;AC=1;AF=0.125;AN=8;AO=13;CIGAR=1X;DP=204;DPB=204;DPRA=1.4;EPP=31.2394;EPPR=415.59;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=520;QR=7630;RO=190;RPL=0;RPP=31.2394;RPPR=415.59;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=190;SRP=415.59;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:17:17,0:17:688:0:0:0,-5.11751,-62.2493 0/0:68:67,0:67:2691:0:0:0,-20.169,-241.889 0/1:60:48,12:48:1928:12:479:-25.3971,0,-155.649 0/0:59:58,1:58:2323:1:41:0,-13.6662,-205.127 dDocent_Contig_4648 33 . C G 472.294 . AB=0.327273;ABP=17.2631;AC=1;AF=0.125;AN=8;AO=18;CIGAR=1X;DP=369;DPB=369;DPRA=0.525478;EPP=42.0968;EPPR=765.197;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=724;QR=14077;RO=351;RPL=0;RPP=42.0968;RPPR=765.197;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=351;SRP=765.197;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:128:128,0:128:5129:0:0:0,-38.5318,-461.454 0/0:71:71,0:71:2868:0:0:0,-21.3731,-258.209 0/0:115:115,0:115:4612:0:0:0,-34.6184,-414.981 0/1:55:37,18:37:1468:18:724:-48.9284,0,-115.804 dDocent_Contig_4649 184 . G T 238.728 . AB=0.146341;ABP=136.635;AC=1;AF=0.125;AN=8;AO=18;CIGAR=1M1X2M;DP=521;DPB=518;DPRA=0.927136;EPP=42.0968;EPPR=1080.06;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=692;QR=19392;RO=496;RPL=18;RPP=42.0968;RPPR=1080.06;RPR=0;RUN=1;SAF=0;SAP=42.0968;SAR=18;SRF=0;SRP=1080.06;SRR=496;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:173:173,0,0:173:6786:0,0:0,0:0,-52.0782,-610.488,-52.0782,-610.488,-610.488 0|1:123:105,0,18:105:4072:0,18:0,692:-25.5717,-57.1799,-391.679,0,-334.883,-329.465 0|0:110:103,6,0:103:4017:6,0:246,0:0,-10.4621,-339.083,-31.0061,-340.889,-361.195 0|0:115:115,0,0:115:4517:0,0:0,0:0,-34.6184,-406.498,-34.6184,-406.498,-406.498 dDocent_Contig_4650 1 . N G 1220.02 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=42;CIGAR=1X;DP=42;DPB=42;DPRA=0;EPP=94.2121;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=51.2381;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1454;QR=0;RO=0;RPL=0;RPP=94.2121;RPPR=0;RPR=42;RUN=1;SAF=0;SAP=94.2121;SAR=42;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:12:0,12:0:0:12:416:-35.109,-3.61236,0 1/1:8:0,8:0:0:8:277:-22.0084,-2.40824,0 1/1:21:0,21:0:0:21:726:-60.6866,-6.32163,0 1/1:1:0,1:0:0:1:35:-3.49863,-0.30103,0 dDocent_Contig_4651 9 . A C 50925.9 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=1516;CIGAR=1X;DP=1566;DPB=1566;DPRA=0;EPP=3294.96;EPPR=107.241;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.996042;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=58479;QR=1854;RO=48;RPL=0;RPP=3294.96;RPPR=107.241;RPR=1516;RUN=1;SAF=1516;SAP=3294.96;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:544:7,536:7:270:536:20687:-1835.99,-139.165,0 1/1:452:27,424:27:1039:424:16382:-1379.71,-42.3346,0 1/1:284:2,282:2:78:282:10864:-969.934,-78.089,0 1/1:286:12,274:12:467:274:10546:-906.349,-43.7122,0 dDocent_Contig_4652 38 . G A 1002.88 . AB=0.232804;ABP=120.212;AC=1;AF=0.125;AN=8;AO=52;CIGAR=1X;DP=540;DPB=540;DPRA=1.97436;EPP=115.927;EPPR=1062.69;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2083;QR=19504;RO=488;RPL=0;RPP=115.927;RPPR=1062.69;RPR=52;RUN=1;SAF=52;SAP=115.927;SAR=0;SRF=488;SRP=1062.69;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:216:210,6:210:8389:6:241:0,-42.9556,-732.473 0/1:189:145,44:145:5830:44:1763:-101.986,0,-467.578 0/0:78:78,0:78:3104:0:0:0,-23.4803,-279.437 0/0:57:55,2:55:2181:2:79:0,-9.66146,-188.969 dDocent_Contig_4653 129 . G A 222.586 . AB=0.428571;ABP=3.94093;AC=2;AF=0.25;AN=8;AO=9;CIGAR=1X;DP=48;DPB=48;DPRA=0.777778;EPP=22.5536;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=347;QR=1511;RO=39;RPL=0;RPP=22.5536;RPPR=87.6977;RPR=9;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=87.6977;SRR=39;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:19:19,0:19:738:0:0:0,-5.71957,-66.7509 0/0:8:8,0:8:306:0:0:0,-2.40824,-27.9002 0/1:9:7,2:7:273:2:78:-4.6942,0,-22.2287 0/1:12:5,7:5:194:7:269:-20.9621,0,-14.2205 dDocent_Contig_4654 7 . A C 118.835 . AB=0.133333;ABP=108.11;AC=2;AF=0.25;AN=8;AO=20;CIGAR=1X;DP=231;DPB=231;DPRA=0;EPP=46.4397;EPPR=461.191;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=771;QR=8089;RO=211;RPL=0;RPP=46.4397;RPPR=461.191;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=211;SRP=461.191;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:74:70,4:70:2674:4:154:0,-8.04276,-226.62 0/1:48:40,8:40:1535:8:307:-13.5422,0,-123.974 0/0:67:63,4:63:2428:4:156:0,-5.75172,-204.308 0/1:42:38,4:38:1452:4:154:-1.5902,0,-118.315 dDocent_Contig_4655 77 . T A 626.756 . AB=0.4;ABP=8.65613;AC=2;AF=0.25;AN=8;AO=27;CIGAR=1X;DP=128;DPB=128;DPRA=1.44444;EPP=61.6401;EPPR=220.158;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=966;QR=3655;RO=100;RPL=27;RPP=61.6401;RPPR=220.158;RPR=0;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=100;SRP=220.158;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:46:23,23:23:844:23:835:-61.6247,0,-62.4369 0/0:24:24,0:24:875:0:0:0,-7.22472,-79.07 0/1:19:16,3:16:587:3:109:-4.44843,0,-47.4474 0/0:39:37,1:37:1349:1:22:0,-9.52414,-119.443 dDocent_Contig_4656 17 . C G 722.267 . AB=0.175;ABP=223.198;AC=3;AF=0.375;AN=8;AO=47;CIGAR=1X;DP=312;DPB=312;DPRA=0;EPP=105.07;EPPR=578.45;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=0.996226;PAO=0;PQA=0;PQR=0;PRO=0;QA=1855;QR=10538;RO=265;RPL=0;RPP=105.07;RPPR=578.45;RPR=47;RUN=1;SAF=47;SAP=105.07;SAR=0;SRF=265;SRP=578.45;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:75:60,15:60:2398:15:594:-31.2178,0,-193.394 0/0:72:67,5:67:2695:5:201:0,-3.20306,-224.191 0/1:82:73,9:73:2928:9:351:-7.25959,0,-238.916 0/1:83:65,18:65:2517:18:709:-39.1472,0,-201.687 dDocent_Contig_4657 73 . A G 203.845 . AB=0.15625;ABP=134.384;AC=1;AF=0.125;AN=8;AO=20;CIGAR=1X;DP=251;DPB=251;DPRA=3.12195;EPP=46.4397;EPPR=502.449;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=670;QR=7796;RO=230;RPL=20;RPP=46.4397;RPPR=502.449;RPR=0;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=230;SRP=502.449;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:49:48,0:48:1636:0:0:0,-14.4494,-147.191 0/1:128:108,20:108:3660:20:670:-22.0834,0,-291.096 0/0:52:52,0:52:1757:0:0:0,-15.6536,-158.415 0/0:22:22,0:22:743:0:0:0,-6.62266,-67.1844 dDocent_Contig_4658 39 . T A 81.3265 . AB=0.172414;ABP=30.0414;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=94;DPB=94;DPRA=1.33846;EPP=13.8677;EPPR=196.271;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.988764;PAO=0;PQA=0;PQR=0;PRO=0;QA=202;QR=3526;RO=89;RPL=0;RPP=13.8677;RPPR=196.271;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=89;SRP=196.271;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:27:27,0:27:1087:0:0:0,-8.12781,-98.1154 0/1:29:24,5:24:933:5:202:-9.83162,0,-75.5327 0/0:20:20,0:20:777:0:0:0,-6.0206,-70.2336 0/0:18:18,0:18:729:0:0:0,-5.41854,-65.9351 dDocent_Contig_4659 80 . G A 130.756 . AB=0.155844;ABP=82.2267;AC=1;AF=0.125;AN=8;AO=20;CIGAR=1X;DP=414;DPB=414;DPRA=0.676113;EPP=46.4397;EPPR=856.399;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.961832;PAO=0;PQA=0;PQR=0;PRO=0;QA=694;QR=13320;RO=393;RPL=20;RPP=46.4397;RPPR=856.399;RPR=0;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=393;SRP=856.399;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:129:128,0:128:4319:0:0:0,-38.5318,-388.557 0/0:118:118,0:118:3995:0:0:0,-35.5215,-359.76 0/0:90:82,8:82:2787:8:276:0,-1.91678,-225.903 0/1:77:65,12:65:2219:12:418:-14.7745,0,-176.801 dDocent_Contig_4660 10 . A G 90.1884 . AB=0.157895;ABP=41.6397;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=153;DPB=153;DPRA=0.991304;EPP=16.0391;EPPR=322.217;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.7687;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=242;QR=5721;RO=147;RPL=0;RPP=16.0391;RPPR=322.217;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=147;SRP=322.217;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:45:45,0:45:1800:0:0:0,-13.5463,-162.217 0/1:38:32,6:32:1218:6:242:-10.7178,0,-98.4505 0/0:46:46,0:46:1750:0:0:0,-13.8474,-157.648 0/0:24:24,0:24:953:0:0:0,-7.22472,-86.0736 dDocent_Contig_4661 15 . T C 1135.96 . AB=0.104651;ABP=470.028;AC=0;AF=0;AN=8;AO=36;CIGAR=1M1X4M;DP=441;DPB=411;DPRA=1.18213;EPP=81.1833;EPPR=719.596;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=0.99697;PAO=0;PQA=0;PQR=0;PRO=0;QA=1430;QR=13008;RO=330;RPL=0;RPP=81.1833;RPPR=719.596;RPR=36;RUN=1;SAF=36;SAP=81.1833;SAR=0;SRF=330;SRP=719.596;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:175:144,18,0,12:144:5686:18,0,12:716,0,466:-15.6228,0,-462.471,-58.9711,-467.889,-526.843,-20.6861,-429.607,-488.56,-484.948 0|0:112:54,31,6,20:54:2125:31,6,20:1230,241,805:-84.9886,0,-165.463,-81.385,-154.935,-254.377,-34.8969,-108.447,-189.836,-203.674 0|0:97:89,1,7,0:89:3514:1,7,0:39,279,0:0,-23.5869,-312.422,-3.80845,-289.747,-290.845,-26.7917,-312.723,-292.953,-315.929 0|0:57:43,10,0,4:43:1683:10,0,4:382,0,159:-18.382,0,-135.357,-31.3263,-138.367,-169.703,-18.2312,-125.276,-156.612,-155.407 dDocent_Contig_4662 13 . G A 29741.9 . AB=0.890223;ABP=774.106;AC=6;AF=0.75;AN=8;AO=900;CIGAR=1X;DP=978;DPB=978;DPRA=0;EPP=1957.34;EPPR=172.385;GTI=0;LEN=1;MEANALT=1;MQM=59.5544;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.991111;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=35766;QR=3101;RO=78;RPL=0;RPP=1957.34;RPPR=172.385;RPR=900;RUN=1;SAF=900;SAP=1957.34;SAR=0;SRF=78;SRP=172.385;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:324:40,284:40:1605:284:11310:-907.875,0,-47.1447 0/1:259:24,235:24:943:235:9313:-759.512,0,-7.19446 1/1:272:8,264:8:312:264:10503:-915.911,-53.441,0 1/1:123:6,117:6:241:117:4640:-394.291,-14.9615,0 dDocent_Contig_4663 18 . T G 98.3128 . AB=0.171429;ABP=35.8306;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X2M1X;DP=259;DPB=259;DPRA=2.28283;EPP=22.5536;EPPR=545.878;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=350;QR=9902;RO=250;RPL=0;RPP=22.5536;RPPR=545.878;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=250;SRP=545.878;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:106:104,2:104:4115:2:68:0,-25.4545,-363.896 0|0:85:84,1:84:3343:1:41:0,-21.493,-296.836 0|1:35:29,6:29:1150:6:241:-11.5303,0,-93.2459 0|0:33:33,0:33:1294:0:0:0,-9.93399,-116.73 dDocent_Contig_4664 41 . C T 7277.92 . AB=0.383915;ABP=80.1453;AC=4;AF=0.5;AN=8;AO=253;CIGAR=11M1X;DP=659;DPB=641.5;DPRA=0;EPP=552.393;EPPR=789.083;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=10237;QR=14272;RO=362;RPL=0;RPP=552.393;RPPR=789.083;RPR=253;RUN=1;SAF=253;SAP=552.393;SAR=0;SRF=362;SRP=789.083;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:160:86,11,63:86:3390:11,63:417,2543:-183.762,-175.466,-451.048,0,-244.726,-259.947 0|1:215:131,9,75:131:5182:9,75:307,3037:-211.036,-225.579,-649.323,0,-401.614,-403.933 0|1:167:77,12,76:77:3006:12,76:468,3065:-229.478,-214.196,-457.667,0,-208.633,-224.218 0|1:117:68,10,39:68:2694:10,39:373,1592:-110.914,-100.864,-319.58,0,-191.23,-210.014 dDocent_Contig_4665 33 . G T 499.518 . AB=0.2;ABP=96.8179;AC=1;AF=0.125;AN=8;AO=29;CIGAR=1X;DP=335;DPB=335;DPRA=0.761438;EPP=65.983;EPPR=667.481;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.8954;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1171;QR=12190;RO=306;RPL=0;RPP=65.983;RPPR=667.481;RPR=29;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=306;SRP=667.481;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:102:102,0:102:4062:0:0:0,-30.7051,-365.559 0/1:120:96,24:96:3824:24:972:-51.6508,0,-307.989 0/0:52:50,2:50:1995:2:82:0,-7.87388,-171.912 0/0:61:58,3:58:2309:3:117:0,-7.45425,-197.055 dDocent_Contig_4666 98 . N T 342.605 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=11;CIGAR=1X;DP=11;DPB=11;DPRA=0;EPP=26.8965;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=12.2298;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=377;QR=0;RO=0;RPL=11;RPP=26.8965;RPPR=0;RPR=0;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:11:0,11:0:0:11:377:-34.2605,-3.31133,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_4667 19 . C G 76.907 . AB=0.235294;ABP=13.3567;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=77;DPB=77;DPRA=0.85;EPP=11.6962;EPPR=161.528;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=157;QR=2937;RO=73;RPL=0;RPP=11.6962;RPPR=161.528;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=73;SRP=161.528;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:24:24,0:24:964:0:0:0,-7.22472,-87.0602 0/1:17:13,4:13:520:4:157:-9.38967,0,-42.0249 0/0:17:17,0:17:695:0:0:0,-5.11751,-62.8772 0/0:19:19,0:19:758:0:0:0,-5.71957,-68.5428 dDocent_Contig_4668 9 . C G 46.2022 . AB=0.136364;ABP=53.5464;AC=2;AF=0.25;AN=8;AO=8;CIGAR=1X;DP=139;DPB=139;DPRA=0.719697;EPP=20.3821;EPPR=287.473;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=305;QR=5052;RO=131;RPL=0;RPP=20.3821;RPPR=287.473;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=131;SRP=287.473;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:51:49,2:49:1875:2:77:0,-8.04339,-161.689 0/1:32:28,4:28:1085:4:154:-4.60063,0,-88.3216 0/0:44:44,0:44:1706:0:0:0,-13.2453,-153.797 0/1:12:10,2:10:386:2:74:-3.41307,0,-31.4843 dDocent_Contig_4669 18 . C T 10503 . AB=0.842105;ABP=196.157;AC=6;AF=0.75;AN=8;AO=314;CIGAR=1X;DP=349;DPB=349;DPRA=0;EPP=684.853;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=12543;QR=1402;RO=35;RPL=0;RPP=684.853;RPPR=79.0118;RPR=314;RUN=1;SAF=314;SAP=684.853;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:126:24,102:24:966:102:4102:-331.214,0,-49.308 1/1:109:5,104:5:199:104:4137:-354,-14.5248,0 0/1:64:6,58:6:237:58:2298:-187.72,0,-2.43559 1/1:50:0,50:0:0:50:2006:-180.729,-15.0515,0 dDocent_Contig_4671 19 . G A 25072.7 . AB=0.903974;ABP=431.092;AC=7;AF=0.875;AN=8;AO=758;CIGAR=1X;DP=820;DPB=820;DPRA=0;EPP=1648.99;EPPR=137.642;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=30204;QR=2415;RO=62;RPL=0;RPP=1648.99;RPPR=137.642;RPR=758;RUN=1;SAF=758;SAP=1648.99;SAR=0;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:302:29,273:29:1124:273:10905:-889.801,0,-10.5297 1/1:236:10,226:10:385:226:8980:-772.664,-36.0457,0 1/1:159:13,146:13:519:146:5818:-476.357,-0.805874,0 1/1:123:10,113:10:387:113:4501:-369.847,-1.84714,0 dDocent_Contig_4672 66 . C G 34.9089 . AB=0.15;ABP=24.2907;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=57;DPB=57;DPRA=1.62162;EPP=9.52472;EPPR=120.27;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=117;QR=2092;RO=54;RPL=3;RPP=9.52472;RPPR=120.27;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:17,3:17:653:3:117:-4.88869,0,-53.0693 0/0:16:16,0:16:622:0:0:0,-4.81648,-56.314 0/0:8:8,0:8:301:0:0:0,-2.40824,-27.4424 0/0:13:13,0:13:516:0:0:0,-3.91339,-46.7869 dDocent_Contig_4673 209 . N G 199.076 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=5;CIGAR=1X;DP=5;DPB=5;DPRA=0;EPP=13.8677;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=197;QR=0;RO=0;RPL=5;RPP=13.8677;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1:0,1:0:0:1:40:-3.99568,-0.30103,0 1/1:2:0,2:0:0:2:75:-7.1188,-0.60206,0 1/1:1:0,1:0:0:1:41:-4.09457,-0.30103,0 1/1:1:0,1:0:0:1:41:-4.09457,-0.30103,0 dDocent_Contig_4674 35 . G C 90.7683 . AB=0.166667;ABP=37.7539;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=112;DPB=112;DPRA=1.19608;EPP=20.3821;EPPR=228.843;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.961538;PAO=0;PQA=0;PQR=0;PRO=0;QA=314;QR=4132;RO=104;RPL=0;RPP=20.3821;RPPR=228.843;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=104;SRP=228.843;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:36:36,0:36:1408:0:0:0,-10.8371,-126.967 0/1:36:30,6:30:1195:6:236:-10.775,0,-96.9922 0/0:25:23,2:23:924:2:78:0,-0.122973,-76.0628 0/0:15:15,0:15:605:0:0:0,-4.51545,-54.7882 dDocent_Contig_4675 98 . N A 344.017 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=11;CIGAR=1X;DP=11;DPB=11;DPRA=0;EPP=26.8965;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=58.5455;MQMR=0;NS=4;NUMALT=1;ODDS=3.38813e-21;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=360;QR=0;RO=0;RPL=11;RPP=26.8965;RPPR=0;RPR=0;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:98:-9.13732,-0.90309,0 1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0 1/1:5:0,5:0:0:5:164:-15.0773,-1.50515,0 1/1:2:0,2:0:0:2:62:-5.88896,-0.60206,0 dDocent_Contig_4676 11 . T A 8203.2 . AB=0.478632;ABP=5.33025;AC=4;AF=0.5;AN=8;AO=280;CIGAR=1X1M5I4M;DP=585;DPB=819.667;DPRA=0;EPP=611.023;EPPR=650.109;GTI=0;LEN=1;MEANALT=2.75;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.993289;PAO=0;PQA=0;PQR=0;PRO=0;QA=11132;QR=11846;RO=298;RPL=0;RPP=611.023;RPPR=650.109;RPR=280;RUN=1;SAF=280;SAP=611.023;SAR=0;SRF=298;SRP=650.109;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:197:85,108:85:3394:108:4308:-329.224,0,-247.047 0|1:187:89,95:89:3539:95:3778:-284.361,0,-262.875 0|1:148:98,50:98:3877:50:1984:-134.213,0,-304.409 0|1:53:26,27:26:1036:27:1062:-79.9196,0,-77.5778 dDocent_Contig_4677 153 . C T 197.474 . AB=0.232558;ABP=29.7245;AC=1;AF=0.125;AN=8;AO=10;CIGAR=1X;DP=158;DPB=158;DPRA=1.12174;EPP=24.725;EPPR=324.388;GTI=0;LEN=1;MEANALT=1;MQM=40;MQMR=40;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=410;QR=5810;RO=148;RPL=0;RPP=24.725;RPPR=324.388;RPR=10;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=324.388;SRR=148;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:43:33,10:33:1315:10:410:-21.1454,0,-96.7532 0/0:47:47,0:47:1881:0:0:0,-14.1484,-156.434 0/0:36:36,0:36:1366:0:0:0,-10.8371,-114.736 0/0:32:32,0:32:1248:0:0:0,-9.63296,-103.826 dDocent_Contig_4678 7 . A G 74.07 . AB=0.162162;ABP=39.6906;AC=1;AF=0.125;AN=8;AO=8;CIGAR=2X;DP=142;DPB=142;DPRA=1.48718;EPP=20.3821;EPPR=293.988;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=287;QR=5091;RO=134;RPL=0;RPP=20.3821;RPPR=293.988;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=134;SRP=293.988;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:45:44,1:44:1669:1:34:0,-10.1474,-147.079 0|1:37:31,6:31:1181:6:221:-9.10597,0,-95.4513 0|0:34:33,1:33:1250:1:32:0,-7.03571,-109.595 0|0:26:26,0:26:991:0:0:0,-7.82678,-89.502 dDocent_Contig_4679 14 . G A 8850.65 . AB=0.67696;ABP=117.521;AC=4;AF=0.5;AN=8;AO=285;CIGAR=1X;DP=421;DPB=421;DPRA=0;EPP=621.88;EPPR=298.331;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.996491;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=11320;QR=5428;RO=136;RPL=0;RPP=621.88;RPPR=298.331;RPR=285;RUN=1;SAF=285;SAP=621.88;SAR=0;SRF=136;SRP=298.331;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:139:47,92:47:1897:92:3696:-290.809,0,-129.084 0/1:161:52,109:52:2060:109:4339:-341.984,0,-137.12 0/1:59:24,35:24:952:35:1336:-102.732,0,-68.2185 0/1:62:13,49:13:519:49:1949:-156.938,0,-28.392 dDocent_Contig_4680 17 . G T 41.2181 . AB=0.0978261;ABP=132.26;AC=1;AF=0.125;AN=8;AO=13;CIGAR=1X;DP=276;DPB=276;DPRA=2.03297;EPP=31.2394;EPPR=574.108;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.996198;PAO=0;PQA=0;PQR=0;PRO=0;QA=529;QR=10507;RO=263;RPL=0;RPP=31.2394;RPPR=574.108;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=263;SRP=574.108;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:92:83,9:83:3311:9:365:-5.51972,0,-270.343 0/0:93:89,4:89:3553:4:164:0,-12.8459,-304.636 0/0:55:55,0:55:2186:0:0:0,-16.5566,-196.904 0/0:36:36,0:36:1457:0:0:0,-10.8371,-131.375 dDocent_Contig_4681 8 . T A 72.2448 . AB=0.103004;ABP=321.974;AC=2;AF=0.25;AN=8;AO=33;CIGAR=1X;DP=412;DPB=412;DPRA=0;EPP=74.6689;EPPR=825.998;GTI=0;LEN=1;MEANALT=1;MQM=54.3636;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.818182;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1254;QR=14531;RO=379;RPL=0;RPP=74.6689;RPPR=825.998;RPR=33;RUN=1;SAF=33;SAP=74.6689;SAR=0;SRF=379;SRP=825.998;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:127:119,8:119:4570:8:309:0,-12.8177,-385.937 0/1:108:98,10:98:3727:10:380:-2.04179,0,-303.037 0/1:125:111,14:111:4279:14:540:-8.49176,0,-347.548 0/0:52:51,1:51:1955:1:25:0,-13.1537,-173.692 dDocent_Contig_4682 52 . T C 1998.47 . AB=0.523077;ABP=3.61163;AC=4;AF=0.5;AN=8;AO=68;CIGAR=1X;DP=130;DPB=130;DPRA=0;EPP=150.67;EPPR=137.642;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=0.955882;PAIREDR=0.725806;PAO=0;PQA=0;PQR=0;PRO=0;QA=2723;QR=2443;RO=62;RPL=68;RPP=150.67;RPPR=137.642;RPR=0;RUN=1;SAF=68;SAP=150.67;SAR=0;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:55:22,33:22:868:33:1327:-103.132,0,-61.8698 0/1:33:21,12:21:825:12:485:-34.0664,0,-64.6255 0/1:27:13,14:13:511:14:556:-42.2535,0,-38.2039 0/1:15:6,9:6:239:9:355:-27.7927,0,-17.3691 dDocent_Contig_4683 23 . T A 238.165 . AB=0.157407;ABP=113.112;AC=3;AF=0.375;AN=8;AO=17;CIGAR=1X;DP=145;DPB=145;DPRA=0.972973;EPP=39.9253;EPPR=280.959;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=654;QR=5161;RO=128;RPL=0;RPP=39.9253;RPPR=280.959;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=128;SRP=280.959;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:37:37,0:37:1500:0:0:0,-11.1381,-135.238 0/1:43:36,7:36:1447:7:278:-12.4453,0,-117.531 0/1:37:34,3:34:1360:3:122:-0.234383,0,-111.519 0/1:28:21,7:21:854:7:254:-14.7673,0,-68.7414 dDocent_Contig_4684 12 . C G 3015.36 . AB=0.598802;ABP=17.1704;AC=4;AF=0.5;AN=8;AO=100;CIGAR=1X;DP=167;DPB=167;DPRA=0;EPP=220.158;EPPR=148.499;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.985075;PAO=0;PQA=0;PQR=0;PRO=0;QA=3978;QR=2673;RO=67;RPL=0;RPP=220.158;RPPR=148.499;RPR=100;RUN=1;SAF=100;SAP=220.158;SAR=0;SRF=67;SRP=148.499;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:57:30,27:30:1199:27:1084:-80.6887,0,-91.0257 0/1:40:14,26:14:563:26:1035:-81.3965,0,-38.9691 0/1:30:16,14:16:626:14:563:-41.9811,0,-47.6386 0/1:40:7,33:7:285:33:1296:-104.868,0,-13.983 dDocent_Contig_4686 13 . A T 82.0968 . AB=0.0612245;ABP=84.9501;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X11M;DP=220;DPB=220.833;DPRA=0.859649;EPP=9.52472;EPPR=452.505;GTI=0;LEN=1;MEANALT=2;MQM=38;MQMR=60;NS=4;NUMALT=2;ODDS=6.93889e-18;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=114;QR=8028;RO=207;RPL=0;RPP=9.52472;RPPR=452.505;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=207;SRP=452.505;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:105:102,3,0:102:3956:3,0:118,0:0,-21.0355,-345.519,-30.7051,-346.422,-355.714 0|0:48:48,0,0:48:1866:0,0:0,0:0,-14.4494,-168.174,-14.4494,-168.174,-168.174 0|1:49:39,7,3:39:1511:7,3:272,114:-9.90865,0,-122.052,-13.1127,-115.618,-136.343 0|0:18:18,0,0:18:695:0,0:0,0:0,-5.41854,-62.8751,-5.41854,-62.8751,-62.8751 dDocent_Contig_4687 87 . T C 55.865 . AB=0.151515;ABP=37.8197;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=76;DPB=76;DPRA=2.30233;EPP=13.8677;EPPR=157.185;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=184;QR=2575;RO=71;RPL=5;RPP=13.8677;RPPR=157.185;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=71;SRP=157.185;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:33:28,5:28:998:5:184:-6.98443,0,-80.1946 0/0:16:16,0:16:589:0:0:0,-4.81648,-53.3478 0/0:19:19,0:19:694:0:0:0,-5.71957,-62.7905 0/0:8:8,0:8:294:0:0:0,-2.40824,-26.8124 dDocent_Contig_4688 19 . G A 10840.3 . AB=0.915888;ABP=163.76;AC=7;AF=0.875;AN=8;AO=328;CIGAR=1X;DP=351;DPB=351;DPRA=0;EPP=715.253;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=12923;QR=877;RO=22;RPL=0;RPP=715.253;RPPR=50.7827;RPR=328;RUN=1;SAF=328;SAP=715.253;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:107:9,98:9:358:98:3835:-312.969,0,-0.369641 1/1:131:9,121:9:358:121:4774:-396.994,-6.95893,0 1/1:87:4,83:4:161:83:3313:-283.353,-11.3141,0 1/1:26:0,26:0:0:26:1001:-90.3829,-7.82678,0 dDocent_Contig_4689 9 . A G 488.115 . AB=0.26506;ABP=42.8032;AC=2;AF=0.25;AN=8;AO=22;CIGAR=1X;DP=194;DPB=194;DPRA=0.747748;EPP=50.7827;EPPR=376.504;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=851;QR=6577;RO=172;RPL=0;RPP=50.7827;RPPR=376.504;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=172;SRP=376.504;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:52:52,0:52:2001:0:0:0,-15.6536,-180.328 0/0:59:59,0:59:2251:0:0:0,-17.7608,-202.808 0/1:53:34,19:34:1310:19:734:-50.4351,0,-102.234 0/1:30:27,3:27:1015:3:117:-1.87948,0,-82.6242 dDocent_Contig_4690 8 . G T 9094.18 . AB=0.529118;ABP=7.43635;AC=4;AF=0.5;AN=8;AO=318;CIGAR=1X;DP=601;DPB=601;DPRA=0;EPP=693.539;EPPR=617.537;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=12190;QR=10816;RO=283;RPL=0;RPP=693.539;RPPR=617.537;RPR=318;RUN=1;SAF=318;SAP=693.539;SAR=0;SRF=283;SRP=617.537;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:151:61,90:61:2334:90:3445:-264.72,0,-164.819 0/1:232:93,139:93:3534:139:5309:-407.967,0,-248.345 0/1:126:72,54:72:2756:54:2091:-150.487,0,-210.293 0/1:92:57,35:57:2192:35:1345:-93.6424,0,-169.809 dDocent_Contig_4691 8 . C T 785.532 . AB=0.394161;ABP=16.3403;AC=4;AF=0.5;AN=8;AO=54;CIGAR=1X1M;DP=158;DPB=158;DPRA=0;EPP=120.27;EPPR=213.643;GTI=0;LEN=1;MEANALT=1.33333;MQM=28.963;MQMR=57.4433;NS=4;NUMALT=2;ODDS=0;PAIRED=0.481481;PAIREDR=0.969072;PAO=0;PQA=0;PQR=0;PRO=0;QA=1357;QR=3707;RO=97;RPL=0;RPP=120.27;RPPR=213.643;RPR=54;RUN=1;SAF=54;SAP=120.27;SAR=0;SRF=97;SRP=213.643;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:52:40,0,11:40:1533:0,11:0,257:-5.56017,-17.6014,-133.811,0,-116.141,-112.83 0|1:42:17,0,25:17:652:0,25:0,627:-39.7249,-44.8424,-98.4199,0,-53.8993,-46.3736 0|1:43:25,0,18:25:957:0,18:0,473:-25.6749,-33.2007,-109.206,0,-76.2987,-70.8802 0|1:21:15,6,0:15:565:6,0:233,0:-14.9911,0,-44.8672,-19.5066,-46.6734,-65.7957 dDocent_Contig_4693 139 . A G 458.641 . AB=0.294118;ABP=34.305;AC=2;AF=0.25;AN=8;AO=25;CIGAR=1X;DP=277;DPB=277;DPRA=0.442708;EPP=57.2971;EPPR=550.221;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=821;QR=8690;RO=252;RPL=0;RPP=57.2971;RPPR=550.221;RPR=25;RUN=1;SAF=0;SAP=57.2971;SAR=25;SRF=0;SRP=550.221;SRR=252;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:86:86,0:86:2934:0:0:0,-25.8886,-264.3 0/0:106:106,0:106:3682:0:0:0,-31.9092,-331.603 0/1:50:29,21:29:1011:21:692:-47.537,0,-76.2522 0/1:35:31,4:31:1063:4:129:-1.39255,0,-85.442 dDocent_Contig_4694 74 . G A 179.591 . AB=0.217391;ABP=34.9215;AC=2;AF=0.25;AN=8;AO=11;CIGAR=1X;DP=66;DPB=66;DPRA=3.33333;EPP=26.8965;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=423;QR=2054;RO=55;RPL=11;RPP=26.8965;RPPR=122.441;RPR=0;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:11,4:11:402:4:151:-9.43955,0,-32.0032 0/1:31:25,6:25:964:6:232:-11.9168,0,-77.7287 0/0:14:13,1:13:473:1:40:0,-0.218741,-38.8968 0/0:6:6,0:6:215:0:0:0,-1.80618,-19.6921 dDocent_Contig_4695 13 . T C 6561.88 . AB=0.813492;ABP=218.124;AC=4;AF=0.5;AN=8;AO=205;CIGAR=1X;DP=252;DPB=252;DPRA=0;EPP=448.162;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=8208;QR=1839;RO=47;RPL=0;RPP=448.162;RPPR=105.07;RPR=205;RUN=1;SAF=205;SAP=448.162;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:59:9,50:9:353:50:2022:-164.402,0,-14.3663 0/1:110:14,96:14:540:96:3849:-313.29,0,-15.8122 0/1:47:10,37:10:394:37:1456:-117.138,0,-21.6656 0/1:36:14,22:14:552:22:881:-68.7559,0,-39.1837 dDocent_Contig_4696 33 . C T 2261.32 . AB=0.115385;ABP=36.4176;AC=3;AF=0.375;AN=8;AO=3;CIGAR=1X6M;DP=248;DPB=248;DPRA=0;EPP=9.52472;EPPR=246.215;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=4;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=102;QR=4391;RO=112;RPL=0;RPP=9.52472;RPPR=246.215;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=112;SRP=246.215;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:105:46,41,0,0,17:46:1805:41,0,0,17:1617,0,0,661:-119.2,0,-136.103,-133.048,-148.445,-281.49,-133.048,-148.445,-281.49,-281.49,-78.7441,-94.141,-227.185,-227.185,-222.068 0|1:74:41,20,0,0,12:41:1617:20,0,0,12:796,0,0,449:-53.218,0,-127.04,-65.5602,-133.061,-198.606,-65.5602,-133.061,-198.606,-198.606,-28.8148,-96.3121,-161.857,-161.857,-158.244 0|0:43:17,12,0,0,14:17:676:12,0,0,14:481,0,0,524:-37.1132,-2.58679,-54.6477,-42.2307,-58.26,-97.8939,-42.2307,-58.26,-97.8939,-97.8939,0,-16.0251,-55.6558,-55.6558,-51.4414 0|1:26:8,8,3,3,4:8:293:8,3,3,4:320,118,102,163:-23.9975,0,-21.5661,-24.387,-21.9527,-47.4198,-18.136,-15.7017,-40.0587,-41.1847,-12.9401,-10.5045,-34.8701,-28.6288,-35.695 dDocent_Contig_4697 107 . N G 119.291 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=7.37776;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=129;QR=0;RO=0;RPL=0;RPP=11.6962;RPPR=0;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:4:0,4:0:0:4:129:-11.9288,-1.20412,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_4698 66 . G A 2631.02 . AB=0.261538;ABP=227.741;AC=4;AF=0.5;AN=8;AO=119;CIGAR=1X;DP=455;DPB=455;DPRA=0;EPP=261.416;EPPR=732.625;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4514;QR=12998;RO=336;RPL=119;RPP=261.416;RPPR=732.625;RPR=0;RUN=1;SAF=119;SAP=261.416;SAR=0;SRF=336;SRP=732.625;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:132:109,23:109:4214:23:875:-39.3344,0,-339.572 0/1:127:73,54:73:2837:54:2023:-144.075,0,-217.26 0/1:123:91,32:91:3520:32:1228:-73.7876,0,-279.864 0/1:73:63,10:63:2427:10:388:-13.3028,0,-196.649 dDocent_Contig_4699 31 . A G 54.1293 . AB=0.1;ABP=155.882;AC=1;AF=0.125;AN=8;AO=11;CIGAR=1X;DP=464;DPB=464;DPRA=0.932203;EPP=26.8965;EPPR=986.687;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=443;QR=18027;RO=453;RPL=0;RPP=26.8965;RPPR=986.687;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=453;SRP=986.687;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:162:162,0:162:6448:0:0:0,-48.7669,-580.059 0/1:110:99,11:99:3944:11:443:-7.1119,0,-321.826 0/0:130:130,0:130:5148:0:0:0,-39.1339,-463.192 0/0:62:62,0:62:2487:0:0:0,-18.6639,-223.965 dDocent_Contig_4701 16 . A G 832.936 . AB=0.256944;ABP=76.9007;AC=2;AF=0.25;AN=8;AO=40;CIGAR=1X;DP=278;DPB=278;DPRA=0;EPP=89.8692;EPPR=519.821;GTI=0;LEN=1;MEANALT=1;MQM=58.675;MQMR=59.7731;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.995798;PAO=0;PQA=0;PQR=0;PRO=0;QA=1558;QR=9448;RO=238;RPL=0;RPP=89.8692;RPPR=519.821;RPR=40;RUN=1;SAF=40;SAP=89.8692;SAR=0;SRF=238;SRP=519.821;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:105:104,1:104:4137:1:23:0,-29.3082,-370.009 0/1:74:48,26:48:1934:26:1028:-70.5344,0,-151.979 0/1:70:59,11:59:2307:11:443:-16.1571,0,-185.623 0/0:29:27,2:27:1070:2:64:0,-2.65511,-90.513 dDocent_Contig_4702 98 . N T 41.7894 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=40;QR=0;RO=0;RPL=3;RPP=9.52472;RPPR=0;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1:0,1:0:0:1:13:-1.29999,-0.30103,0 ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:27:-2.56498,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_4703 20 . G A 124.884 . AB=0.26087;ABP=14.4341;AC=2;AF=0.25;AN=8;AO=10;CIGAR=1X;DP=134;DPB=134;DPRA=0;EPP=24.725;EPPR=272.273;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=407;QR=4877;RO=124;RPL=0;RPP=24.725;RPPR=272.273;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=124;SRP=272.273;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:57:56,1:56:2184:1:41:0,-13.0641,-192.636 0/0:54:51,3:51:2010:3:122:0,-4.88313,-169.72 0/1:15:10,5:10:398:5:203:-14.1376,0,-31.6604 0/1:8:7,1:7:285:1:41:-1.68633,0,-23.6162 dDocent_Contig_4704 136 . C T 152.167 . AB=0.4;ABP=4.31318;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=66;DPB=66;DPRA=0.882353;EPP=16.0391;EPPR=100.871;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=0.9;PAO=0;PQA=0;PQR=0;PRO=0;QA=234;QR=2289;RO=60;RPL=0;RPP=16.0391;RPPR=133.299;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=4;SRP=100.871;SRR=56;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:11,0:11:409:0:0:0,-3.31133,-37.1466 0/0:27:27,0:27:1013:0:0:0,-8.12781,-91.4481 0/1:15:9,6:9:358:6:234:-16.9157,0,-28.0648 0/0:13:13,0:13:509:0:0:0,-3.91339,-46.1542 dDocent_Contig_4705 108 . C A 78.6791 . AB=0.197368;ABP=63.4687;AC=3;AF=0.375;AN=8;AO=15;CIGAR=1X2M1X;DP=94;DPB=94;DPRA=1.40741;EPP=35.5824;EPPR=165.871;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=377;QR=2308;RO=75;RPL=0;RPP=35.5824;RPPR=165.871;RPR=15;RUN=1;SAF=0;SAP=35.5824;SAR=15;SRF=0;SRP=165.871;SRR=75;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:7:2,4:2:46:4:98:-6.93728,0,-2.25991 0|1:50:39,8:39:1203:8:204:-4.25432,0,-94.2044 0|0:18:18,0:18:564:0:0:0,-5.41854,-51.061 0|1:19:16,3:16:495:3:75:-1.27995,0,-39.1292 dDocent_Contig_4706 13 . G A 190.077 . AB=0.16;ABP=78.317;AC=1;AF=0.125;AN=8;AO=21;CIGAR=1X;DP=270;DPB=270;DPRA=4.16667;EPP=48.6112;EPPR=543.707;GTI=0;LEN=1;MEANALT=1;MQM=58.8095;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.52381;PAIREDR=0.409639;PAO=0;PQA=0;PQR=0;PRO=0;QA=826;QR=9968;RO=249;RPL=0;RPP=48.6112;RPPR=543.707;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=249;SRP=543.707;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:70:64,6:64:2573:6:225:0,-0.466761,-211.091 0/0:105:102,3:102:4093:3:117:0,-20.6989,-357.423 0/1:75:63,12:63:2489:12:484:-20.7063,0,-201.574 0/0:20:20,0:20:813:0:0:0,-6.0206,-73.485 dDocent_Contig_4707 99 . N A 223.946 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=7;CIGAR=1X1I2X;DP=7;DPB=9.33333;DPRA=0;EPP=18.2106;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=238;QR=0;RO=0;RPL=7;RPP=18.2106;RPPR=0;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. 1|1:5:0,5:0:0:5:170:-15.635,-1.50515,0 1|1:2:0,2:0:0:2:68:-6.45793,-0.60206,0 dDocent_Contig_4708 30 . G A 3104.16 . AB=0.170489;ABP=948.934;AC=4;AF=0.5;AN=8;AO=171;CIGAR=1X1M1X;DP=1003;DPB=1003;DPRA=0;EPP=374.332;EPPR=1662.02;GTI=0;LEN=1;MEANALT=2.25;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6664;QR=29554;RO=764;RPL=0;RPP=374.332;RPPR=1662.02;RPR=171;RUN=1;SAF=171;SAP=374.332;SAR=0;SRF=764;SRP=1662.02;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:374:252,99,22:252:9831:99,22:3837,834:-239.351,0,-778.28,-246.837,-739.708,-1048.28 0|1:313:254,29,30:254:9773:29,30:1138,1132:-17.1363,0,-793.532,-0.838849,-709.496,-794.057 0|1:203:161,32,10:161:6209:32,10:1259,368:-55.1144,0,-500.207,-73.5002,-479.755,-580.307 0|1:113:97,11,5:97:3741:11,5:430,162:-6.197,0,-303.892,-22.3497,-294.139,-327.985 dDocent_Contig_4710 75 . T G 3829.59 . AB=0.810811;ABP=127.195;AC=5;AF=0.625;AN=8;AO=137;CIGAR=1X;DP=165;DPB=165;DPRA=0;EPP=300.502;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4797;QR=949;RO=27;RPL=137;RPP=300.502;RPPR=61.6401;RPR=0;RUN=1;SAF=137;SAP=300.502;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:54:8,46:8:273:46:1616:-129.474,0,-8.64456 0/1:42:11,30:11:395:30:1063:-83.3,0,-23.2085 0/1:52:8,44:8:281:44:1527:-122.067,0,-9.97682 1/1:17:0,17:0:0:17:591:-53.5158,-5.11751,0 dDocent_Contig_4711 9 . A T 44.1782 . AB=0.1875;ABP=16.582;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=46;DPB=46;DPRA=1.6;EPP=9.52472;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=114;QR=1630;RO=43;RPL=0;RPP=9.52472;RPPR=96.3836;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:13,3:13:494:3:114:-5.81574,0,-39.9865 0/0:12:12,0:12:461:0:0:0,-3.61236,-41.8408 0/0:11:11,0:11:418:0:0:0,-3.31133,-37.9697 0/0:7:7,0:7:257:0:0:0,-2.10721,-23.4803 dDocent_Contig_4712 11 . C T 122.199 . AB=0.125;ABP=139.813;AC=3;AF=0.375;AN=8;AO=15;CIGAR=1X;DP=161;DPB=161;DPRA=0;EPP=35.5824;EPPR=320.045;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=579;QR=5812;RO=146;RPL=0;RPP=35.5824;RPPR=320.045;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=146;SRP=320.045;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:51:45,6:45:1800:6:235:-6.16592,0,-146.859 0/0:49:48,1:48:1923:1:41:0,-10.6559,-169.174 0/1:41:35,6:35:1374:6:238:-9.45043,0,-111.58 0/1:20:18,2:18:715:2:65:-0.149136,0,-58.655 dDocent_Contig_4713 53 . T A 4882.77 . AB=0.686508;ABP=79.1497;AC=4;AF=0.5;AN=8;AO=173;CIGAR=1X;DP=252;DPB=252;DPRA=0;EPP=378.675;EPPR=174.557;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6339;QR=2683;RO=79;RPL=173;RPP=378.675;RPPR=174.557;RPR=0;RUN=1;SAF=173;SAP=378.675;SAR=0;SRF=79;SRP=174.557;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:94:11,83:11:368:83:3042:-245.648,0,-5.13948 0/1:75:42,33:42:1444:33:1191:-84.8934,0,-107.659 0/1:37:15,22:15:532:22:806:-61.7024,0,-37.0693 0/1:46:11,35:11:339:35:1300:-103.431,0,-16.9551 dDocent_Contig_4715 40 . A G 1272.74 . AB=0.146104;ABP=673.121;AC=4;AF=0.5;AN=8;AO=90;CIGAR=1X;DP=616;DPB=616;DPRA=0;EPP=198.443;EPPR=1145.2;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3543;QR=20718;RO=526;RPL=0;RPP=198.443;RPPR=1145.2;RPR=90;RUN=1;SAF=90;SAP=198.443;SAR=0;SRF=526;SRP=1145.2;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:185:167,18:167:6577:18:719:-9.34644,0,-536.011 0/1:182:152,30:152:5988:30:1189:-52.5044,0,-483.961 0/1:163:133,30:133:5245:30:1157:-55.3388,0,-422.888 0/1:86:74,12:74:2908:12:478:-17.4818,0,-235.95 dDocent_Contig_4716 15 . T G 586.032 . AB=0.174129;ABP=188.407;AC=4;AF=0.5;AN=8;AO=35;CIGAR=1X;DP=201;DPB=201;DPRA=0;EPP=79.0118;EPPR=363.475;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1376;QR=6687;RO=166;RPL=0;RPP=79.0118;RPPR=363.475;RPR=35;RUN=1;SAF=35;SAP=79.0118;SAR=0;SRF=166;SRP=363.475;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:52:42,10:42:1704:10:390:-19.7997,0,-137.92 0/1:64:51,13:51:2059:13:523:-28.1501,0,-166.221 0/1:65:59,6:59:2375:6:222:-0.759145,0,-194.328 0/1:20:14,6:14:549:6:241:-16.0452,0,-43.725 dDocent_Contig_4717 8 . C T 6004.12 . AB=0.366129;ABP=99.5217;AC=4;AF=0.5;AN=8;AO=227;CIGAR=1X2M1X;DP=620;DPB=620;DPRA=0;EPP=495.935;EPPR=856.399;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=8818;QR=15307;RO=393;RPL=0;RPP=495.935;RPPR=856.399;RPR=227;RUN=1;SAF=227;SAP=495.935;SAR=0;SRF=393;SRP=856.399;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:204:120,84:120:4678:84:3280:-233.905,0,-359.615 0|1:207:144,63:144:5585:63:2468:-159.989,0,-440.273 0|1:142:83,59:83:3248:59:2259:-160.771,0,-249.69 0|1:67:46,21:46:1796:21:811:-53.1447,0,-141.709 dDocent_Contig_4718 31 . A G 823.088 . AB=0.410959;ABP=8.03741;AC=1;AF=0.125;AN=8;AO=30;CIGAR=2X;DP=144;DPB=144;DPRA=3.08451;EPP=68.1545;EPPR=250.558;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.8246;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.95614;PAO=0;PQA=0;PQR=0;PRO=0;QA=1171;QR=4508;RO=114;RPL=0;RPP=68.1545;RPPR=250.558;RPR=30;RUN=1;SAF=30;SAP=68.1545;SAR=0;SRF=114;SRP=250.558;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:73:43,30:43:1685:30:1171:-83.7067,0,-129.893 0|0:32:32,0:32:1262:0:0:0,-9.63296,-113.838 0|0:34:34,0:34:1364:0:0:0,-10.235,-123.019 0|0:5:5,0:5:197:0:0:0,-1.50515,-18.1064 dDocent_Contig_4719 83 . A G 106.327 . AB=0.141304;ABP=105.825;AC=2;AF=0.25;AN=8;AO=22;CIGAR=1X;DP=253;DPB=253;DPRA=0;EPP=50.7827;EPPR=502.449;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=789;QR=8255;RO=230;RPL=22;RPP=50.7827;RPPR=502.449;RPR=0;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=230;SRP=502.449;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:79:73,6:73:2666:6:222:0,-3.44331,-219.834 0/1:61:54,7:54:1935:7:238:-3.38525,0,-156.052 0/0:82:78,3:78:2791:3:111:0,-14.1745,-241.132 0/1:31:25,6:25:863:6:218:-10.6409,0,-68.6472 dDocent_Contig_4720 118 . G T 198.015 . AB=0.141892;ABP=167.866;AC=1;AF=0.125;AN=8;AO=22;CIGAR=1X;DP=459;DPB=459;DPRA=2.1875;EPP=50.7827;EPPR=951.944;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=738;QR=14986;RO=437;RPL=0;RPP=50.7827;RPPR=951.944;RPR=22;RUN=1;SAF=0;SAP=50.7827;SAR=22;SRF=0;SRP=951.944;SRR=437;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:148:127,21:127:4358:21:727:-21.1995,0,-347.865 0/0:167:166,1:166:5725:1:11:0,-49.172,-514.302 0/0:113:113,0:113:3883:0:0:0,-34.0164,-349.684 0/0:31:31,0:31:1020:0:0:0,-9.33193,-92.0955 dDocent_Contig_4721 107 . N A 66.4848 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=70;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:70:-6.6474,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_4724 8 . T A 3385.08 . AB=0.0356537;ABP=1106.11;AC=0;AF=0;AN=8;AO=21;CIGAR=2M1X3M;DP=589;DPB=691.667;DPRA=0;EPP=48.6112;EPPR=895.485;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=802;QR=15801;RO=411;RPL=0;RPP=48.6112;RPPR=895.485;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=411;SRP=895.485;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:182:138,33,10:138:5302:33,10:1228,384:-58.97,0,-425.332,-68.9864,-403.744,-501.239 0|0:200:143,55,2:143:5510:55,2:2070,77:-126.553,0,-435.885,-163.277,-446.119,-615.123 0|0:116:69,41,6:69:2650:41,6:1534,233:-104.835,0,-205.19,-106.458,-198.386,-322.194 0|0:91:61,25,3:61:2339:25,3:905,108:-55.5485,0,-184.518,-65.1003,-183.234,-256.196 dDocent_Contig_4725 47 . T A 4356.13 . AB=0.310219;ABP=174.446;AC=4;AF=0.5;AN=8;AO=170;CIGAR=1X;DP=548;DPB=548;DPRA=0;EPP=372.161;EPPR=821.655;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=2.77556e-17;PAIRED=1;PAIREDR=0.981432;PAO=0;PQA=0;PQR=0;PRO=0;QA=6746;QR=14994;RO=377;RPL=0;RPP=372.161;RPPR=821.655;RPR=170;RUN=1;SAF=170;SAP=372.161;SAR=0;SRF=377;SRP=821.655;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:164:121,43:121:4799:43:1716:-105.299,0,-382.44 0/1:186:85,101:85:3412:101:3995:-303.545,0,-251.124 0/1:107:93,14:93:3641:14:566:-19.0721,0,-295.495 0/1:91:78,12:78:3142:12:469:-15.0944,0,-255.382 dDocent_Contig_4726 43 . A T 40.715 . AB=0.0944882;ABP=184.405;AC=1;AF=0.125;AN=8;AO=17;CIGAR=1X;DP=367;DPB=367;DPRA=1.21519;EPP=39.9253;EPPR=763.026;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=0.954286;PAO=0;PQA=0;PQR=0;PRO=0;QA=652;QR=13725;RO=350;RPL=0;RPP=39.9253;RPPR=763.026;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=350;SRP=763.026;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:72:71,1:71:2793:1:9:0,-20.7742,-250.598 0/1:127:115,12:115:4508:12:485:-5.77043,0,-367.46 0/0:89:85,4:85:3370:4:158:0,-12.1918,-288.768 0/0:79:79,0:79:3054:0:0:0,-23.7814,-274.981 dDocent_Contig_4727 7 . A T 3926.46 . AB=0.239216;ABP=304.274;AC=4;AF=0.5;AN=8;AO=122;CIGAR=1X4M;DP=510;DPB=510.8;DPRA=0;EPP=267.93;EPPR=383.018;GTI=0;LEN=1;MEANALT=5.25;MQM=60;MQMR=60;NS=4;NUMALT=4;ODDS=0;PAIRED=0.721311;PAIREDR=0.937143;PAO=0;PQA=0;PQR=0;PRO=0;QA=4619;QR=6748;RO=175;RPL=0;RPP=267.93;RPPR=383.018;RPR=122;RUN=1;SAF=122;SAP=267.93;SAR=0;SRF=175;SRP=383.018;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:163:54,28,36,32,9:54:2078:28,36,32,9:1070,1374,1230,123:-96.3243,-25.4168,-187.613,0,-83.4668,-159.79,-11.5931,-95.0594,-69.644,-172.587,-106.586,-190.043,-164.63,-176.222,-274.489 0|1:165:55,5,55,37,9:55:2123:5,55,37,9:191,2099,1382,135:-155.602,-156.486,-329.345,0,-158.708,-157.824,-59.0056,-217.703,-61.2286,-222.238,-165.121,-323.807,-167.343,-226.336,-336.769 0|1:138:53,8,26,40,7:53:2048:8,26,40,7:310,990,1515,81:-108.268,-98.7513,-264.568,-43.1326,-185.893,-203.536,0,-142.768,-87.1523,-156.197,-120.84,-263.585,-207.975,-164.853,-286.947 0|1:44:13,1,14,13,3:13:499:1,14,13,3:39,534,492,27:-39.8248,-40.531,-81.2011,0,-37.7792,-36.772,-3.38282,-41.1593,-0.63008,-40.453,-42.9785,-80.7339,-40.2279,-43.607,-83.0369 dDocent_Contig_4728 106 . N A 926.598 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=30;CIGAR=2X;DP=30;DPB=30;DPRA=0;EPP=68.1545;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1008;QR=0;RO=0;RPL=0;RPP=68.1545;RPPR=0;RPR=30;RUN=1;SAF=0;SAP=68.1545;SAR=30;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:13:0,13:0:0:13:423:-38.3834,-3.91339,0 1|1:1:0,1:0:0:1:35:-3.49863,-0.30103,0 1|1:14:0,14:0:0:14:480:-43.5275,-4.21442,0 1|1:2:0,2:0:0:2:70:-6.6474,-0.60206,0 dDocent_Contig_4729 9 . A G 1256.46 . AB=0.207547;ABP=239.25;AC=3;AF=0.375;AN=8;AO=68;CIGAR=1X;DP=350;DPB=350;DPRA=0;EPP=150.67;EPPR=615.366;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2581;QR=10767;RO=282;RPL=0;RPP=150.67;RPPR=615.366;RPR=68;RUN=1;SAF=68;SAP=150.67;SAR=0;SRF=282;SRP=615.366;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:128:85,43:85:3289:43:1630:-108.428,0,-257.617 0/1:129:114,15:114:4328:15:574:-13.1686,0,-350.76 0/1:61:53,8:53:2019:8:305:-9.44715,0,-163.587 0/0:32:30,2:30:1131:2:72:0,-2.79705,-95.2541 dDocent_Contig_4730 24 . T G 4568.39 . AB=0.72973;ABP=87.8151;AC=6;AF=0.75;AN=8;AO=135;CIGAR=8M1X2M;DP=185;DPB=190;DPRA=0;EPP=296.159;EPPR=57.2971;GTI=0;LEN=1;MEANALT=2.75;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5314;QR=986;RO=25;RPL=0;RPP=296.159;RPPR=57.2971;RPR=135;RUN=1;SAF=135;SAP=296.159;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:60:11,0,2,47:11:435:0,2,47:0,79,1872:-150.827,-154.138,-189.937,-147.637,-183.436,-182.834,0,-35.7999,-29.299,-21.6515 1|1:50:8,11,1,29:8:319:11,1,29:431,35,1138:-100.338,-67.3059,-90.2677,-99.8999,-90.7324,-125.872,-9.16493,0,-32.5952,-26.711 1|1:43:0,0,8,33:0:0:0,8,33:0,306,1273:-129.621,-129.621,-129.621,-104.512,-104.512,-102.104,-25.1117,-25.1117,0,-15.1777 0|1:32:6,0,0,26:6:232:0,0,26:0,0,1031:-83.4507,-85.2568,-104.309,-85.2568,-104.309,-104.309,0,-19.4407,-19.4407,-11.6139 dDocent_Contig_4731 9 . C A 6170.19 . AB=0.699588;ABP=87.0901;AC=5;AF=0.625;AN=8;AO=203;CIGAR=1X;DP=279;DPB=279;DPRA=0;EPP=443.819;EPPR=165.871;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7836;QR=2888;RO=75;RPL=0;RPP=443.819;RPPR=165.871;RPR=203;RUN=1;SAF=203;SAP=443.819;SAR=0;SRF=75;SRP=165.871;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:104:25,79:25:955:79:3056:-243.89,0,-54.9532 0/1:94:36,57:36:1402:57:2203:-170.103,0,-98.0736 0/1:45:11,34:11:418:34:1311:-104.732,0,-24.4237 1/1:36:3,33:3:113:33:1266:-103.692,-0.298106,0 dDocent_Contig_4732 9 . G A 5420.91 . AB=0.854369;ABP=227.705;AC=4;AF=0.5;AN=8;AO=176;CIGAR=1X;DP=206;DPB=206;DPRA=0;EPP=385.189;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6783;QR=1125;RO=30;RPL=0;RPP=385.189;RPPR=68.1545;RPR=176;RUN=1;SAF=176;SAP=385.189;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:78:10,68:10:375:68:2615:-212.056,0,-10.6193 0/1:51:8,43:8:305:43:1660:-134.309,0,-12.4573 0/1:55:9,46:9:328:46:1782:-144.074,0,-13.3074 0/1:22:3,19:3:117:19:726:-59.048,0,-4.28772 dDocent_Contig_4733 65 . A G 153.479 . AB=0.161765;ABP=70.5814;AC=3;AF=0.375;AN=8;AO=11;CIGAR=1X;DP=83;DPB=83;DPRA=1.51111;EPP=26.8965;EPPR=159.356;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=445;QR=2802;RO=72;RPL=11;RPP=26.8965;RPPR=159.356;RPR=0;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=72;SRP=159.356;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:15:15,0:15:605:0:0:0,-4.51545,-54.789 0/1:17:14,3:14:548:3:120:-6.0698,0,-44.5423 0/1:38:34,4:34:1303:4:162:-3.52782,0,-106.093 0/1:13:9,4:9:346:4:163:-11.145,0,-27.5828 dDocent_Contig_4736 35 . T C 187.228 . AB=0.125984;ABP=157.322;AC=1;AF=0.125;AN=8;AO=18;CIGAR=1X;DP=359;DPB=359;DPRA=1.08721;EPP=42.0968;EPPR=743.482;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=729;QR=12838;RO=341;RPL=0;RPP=42.0968;RPPR=743.482;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=341;SRP=743.482;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:147:147,0:147:5552:0:0:0,-44.2514,-499.652 0/1:127:111,16:111:4213:16:648:-20.4218,0,-341.024 0/0:60:58,2:58:2139:2:81:0,-10.3761,-185.041 0/0:25:25,0:25:934:0:0:0,-7.52575,-84.3675 dDocent_Contig_4737 17 . G A 313.072 . AB=0.190476;ABP=72.911;AC=1;AF=0.125;AN=8;AO=17;CIGAR=1X;DP=238;DPB=238;DPRA=1.38;EPP=39.9253;EPPR=482.906;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=654;QR=8682;RO=221;RPL=0;RPP=39.9253;RPPR=482.906;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=221;SRP=482.906;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:58:58,0:58:2280:0:0:0,-17.4597,-205.376 0/1:84:68,16:68:2704:16:644:-33.0062,0,-218.202 0/0:54:53,1:53:2064:1:10:0,-15.2556,-184.956 0/0:42:42,0:42:1634:0:0:0,-12.6433,-147.294 dDocent_Contig_4741 44 . G A 160.774 . AB=0.128571;ABP=170.772;AC=1;AF=0.125;AN=8;AO=18;CIGAR=1X;DP=388;DPB=388;DPRA=1.69355;EPP=42.0968;EPPR=806.455;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=659;QR=14306;RO=370;RPL=0;RPP=42.0968;RPPR=806.455;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=370;SRP=806.455;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:140:122,18:122:4721:18:659:-17.4754,0,-382.726 0/0:107:107,0:107:4158:0:0:0,-32.2102,-374.237 0/0:94:94,0:94:3606:0:0:0,-28.2968,-324.628 0/0:47:47,0:47:1821:0:0:0,-14.1484,-164.126 dDocent_Contig_4742 38 . A T 39.7003 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=21;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=75;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:75:-3.9689,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_4743 30 . T C 9144.58 . AB=0.841791;ABP=342.933;AC=4;AF=0.5;AN=8;AO=282;CIGAR=1X;DP=335;DPB=335;DPRA=0;EPP=615.366;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=11359;QR=2102;RO=53;RPL=0;RPP=615.366;RPPR=118.098;RPR=282;RUN=1;SAF=282;SAP=615.366;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:122:15,107:15:591:107:4300:-350.216,0,-16.8009 0/1:88:9,79:9:341:79:3183:-260.041,0,-4.54248 0/1:68:14,54:14:562:54:2177:-175.628,0,-30.4526 0/1:57:15,42:15:608:42:1699:-135.971,0,-37.8974 dDocent_Contig_4744 44 . T C 716.05 . AB=0.233129;ABP=103.844;AC=1;AF=0.125;AN=8;AO=41;CIGAR=1X;DP=404;DPB=404;DPRA=1.34884;EPP=92.0407;EPPR=791.255;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1446;QR=12495;RO=363;RPL=0;RPP=92.0407;RPPR=791.255;RPR=41;RUN=1;SAF=41;SAP=92.0407;SAR=0;SRF=363;SRP=791.255;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:163:125,38:125:4321:38:1353:-73.003,0,-340.017 0/0:99:99,0:99:3424:0:0:0,-29.802,-308.385 0/0:73:73,0:73:2487:0:0:0,-21.9752,-224.08 0/0:69:66,3:66:2263:3:93:0,-12.0932,-195.257 dDocent_Contig_4745 17 . T A 5879.69 . AB=0.696203;ABP=55.8403;AC=5;AF=0.625;AN=8;AO=185;CIGAR=1X;DP=239;DPB=239;DPRA=0;EPP=404.733;EPPR=120.27;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7345;QR=2064;RO=54;RPL=0;RPP=404.733;RPPR=120.27;RPR=185;RUN=1;SAF=185;SAP=404.733;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:81:6,75:6:229:75:3000:-249.121,-3.40769,0 0/1:64:24,40:24:914:40:1588:-123.894,0,-63.3108 0/1:51:12,39:12:471:39:1546:-124.03,0,-27.3878 0/1:43:12,31:12:450:31:1211:-96.3225,0,-27.8965 dDocent_Contig_4746 98 . N A 138.442 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=5;CIGAR=1X;DP=5;DPB=5;DPRA=0;EPP=13.8677;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=53.4;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=144;QR=0;RO=0;RPL=5;RPP=13.8677;RPPR=0;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:68:-6.45788,-0.60206,0 1/1:3:0,3:0:0:3:76:-7.0845,-0.90309,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_4748 61 . G T 50.4511 . AB=0.118812;ABP=130.482;AC=3;AF=0.375;AN=8;AO=12;CIGAR=1X;DP=131;DPB=131;DPRA=1.12222;EPP=29.068;EPPR=261.416;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=440;QR=4040;RO=119;RPL=12;RPP=29.068;RPPR=261.416;RPR=0;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=119;SRP=261.416;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:49:43,6:43:1449:6:222:-5.58759,0,-115.952 0/0:30:30,0:30:1000:0:0:0,-9.0309,-90.2931 0/1:28:25,3:25:870:3:111:-1.92508,0,-70.1827 0/1:24:21,3:21:721:3:107:-2.75709,0,-57.9858 dDocent_Contig_4749 10 . C G 12325.8 . AB=0.845324;ABP=290.957;AC=5;AF=0.625;AN=8;AO=374;CIGAR=1X;DP=423;DPB=423;DPRA=0;EPP=815.141;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=14933;QR=1943;RO=49;RPL=0;RPP=815.141;RPPR=109.412;RPR=374;RUN=1;SAF=374;SAP=815.141;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:145:6,139:6:244:139:5544:-476.45,-21.3105,0 0/1:158:17,141:17:675:141:5619:-457.951,0,-13.5098 0/1:79:21,58:21:820:58:2321:-185.266,0,-50.325 0/1:41:5,36:5:204:36:1449:-118.311,0,-6.4018 dDocent_Contig_4750 188 . C G 1264.2 . AB=0.344262;ABP=41.5628;AC=3;AF=0.375;AN=8;AO=70;CIGAR=1X;DP=273;DPB=273;DPRA=0;EPP=155.013;EPPR=443.819;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2310;QR=8088;RO=203;RPL=70;RPP=155.013;RPPR=443.819;RPR=0;RUN=1;SAF=0;SAP=155.013;SAR=70;SRF=0;SRP=443.819;SRR=203;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:90:83,7:83:3313:7:244:0,-4.79687,-275.932 0/1:93:46,47:46:1842:47:1499:-107.194,0,-137.995 0/1:64:57,7:57:2270:7:252:-3.762,0,-185.198 0/1:26:17,9:17:663:9:315:-20.8598,0,-52.1674 dDocent_Contig_4751 8 . T C 9747.94 . AB=0.112532;ABP=512.884;AC=1;AF=0.125;AN=8;AO=44;CIGAR=2X;DP=391;DPB=391;DPRA=0;EPP=98.5551;EPPR=37.7539;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=59.9375;NS=4;NUMALT=3;ODDS=5.55112e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1689;QR=596;RO=16;RPL=0;RPP=98.5551;RPPR=37.7539;RPR=44;RUN=1;SAF=44;SAP=98.5551;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:155:5,29,97,24:5:194:29,97,24:1111,3744,856:-381.238,-291.561,-298.771,-75.2521,0,-61.9939,-313.974,-238.734,-22.4329,-322.69 0|0:135:10,5,96,24:10:388:5,96,24:195,3713,784:-332.982,-319.962,-350.338,-30.9608,-46.8188,-33.9553,-273.11,-288.961,0,-297.766 0|0:55:1,3,32,19:1:14:3,32,19:117,1238,598:-148.137,-138.819,-138.87,-46.7234,-38.0456,-38.0415,-100.777,-92.1109,0,-96.0099 0|0:46:0,7,31,8:0:0:7,31,8:266,1191,272:-119.764,-97.9473,-95.8401,-21.9748,-0.14029,-12.6428,-97.7747,-75.96,0,-95.3665 dDocent_Contig_4752 13 . T C 18776.9 . AB=0.641026;ABP=117.542;AC=4;AF=0.5;AN=8;AO=425;CIGAR=2X;DP=663;DPB=663;DPRA=0;EPP=925.886;EPPR=98.5551;GTI=0;LEN=1;MEANALT=2;MQM=59.9365;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.990588;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=16966;QR=1759;RO=44;RPL=0;RPP=925.886;RPPR=98.5551;RPR=425;RUN=1;SAF=425;SAP=925.886;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:158:18,85,55:18:722:85,55:3397,2228:-398.557,-124.234,-158.132,-220.256,0,-263.187 1|0:191:17,138,36:17:688:138,36:5532,1448:-513.233,-62.5956,-77.781,-399.026,0,-444.916 1|0:153:3,88,62:3:103:88,62:3470,2511:-483.295,-198.744,-180.607,-277.154,0,-266.846 1|0:161:6,114,41:6:246:114,41:4567,1649:-490,-115.575,-101.563,-355.919,0,-363.882 dDocent_Contig_4753 107 . N C 65.5375 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=69;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:69:-6.55266,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_4754 184 . C G 104.503 . AB=0.238095;ABP=15.5221;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=96;DPB=96;DPRA=0.84;EPP=13.8677;EPPR=200.614;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=201;QR=3640;RO=91;RPL=5;RPP=13.8677;RPPR=200.614;RPR=0;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=200.614;SRR=91;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:15:15,0:15:601:0:0:0,-4.51545,-54.4286 0/0:39:39,0:39:1579:0:0:0,-11.7402,-142.342 0/0:21:21,0:21:827:0:0:0,-6.32163,-74.7395 0/1:21:16,5:16:633:5:201:-12.1493,0,-50.9769 dDocent_Contig_4755 90 . T A 2314.16 . AB=0.475728;ABP=4.06441;AC=4;AF=0.5;AN=8;AO=98;CIGAR=1X;DP=206;DPB=206;DPRA=0;EPP=215.815;EPPR=235.358;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3329;QR=3637;RO=107;RPL=98;RPP=215.815;RPPR=235.358;RPR=0;RUN=1;SAF=98;SAP=215.815;SAR=0;SRF=107;SRP=235.358;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:54:29,25:29:1002:25:867:-62.0921,0,-74.2359 0/1:62:31,30:31:1011:30:1017:-73.135,0,-72.5822 0/1:64:38,26:38:1312:26:858:-58.2578,0,-99.1163 0/1:26:9,17:9:312:17:587:-45.3293,0,-20.5894 dDocent_Contig_4756 14 . A C 403.61 . AB=0.24;ABP=47.0478;AC=1;AF=0.125;AN=8;AO=18;CIGAR=1M1X2M;DP=221;DPB=223.5;DPRA=1.5411;EPP=42.0968;EPPR=430.79;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=699;QR=7776;RO=197;RPL=0;RPP=42.0968;RPPR=430.79;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=197;SRP=430.79;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:75:52,5,18:52:2055:5,18:199,699:-41.7589,-41.0251,-208.627,0,-152.714,-163.681 0|0:69:69,0,0:69:2740:0,0:0,0:0,-20.7711,-246.726,-20.7711,-246.726,-246.726 0|0:36:35,0,0:35:1367:0,0:0,0:0,-10.536,-123.179,-10.536,-123.179,-123.179 0|0:41:41,0,0:41:1614:0,0:0,0:0,-12.3422,-145.501,-12.3422,-145.501,-145.501 dDocent_Contig_4757 1 . N G 147.843 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=7.37776;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=160;QR=0;RO=0;RPL=0;RPP=11.6962;RPPR=0;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:4:0,4:0:0:4:160:-14.784,-1.20412,0 ./.:.:.:.:.:.:.:. dDocent_Contig_4758 14 . C G 545.094 . AB=0.183673;ABP=45.5977;AC=4;AF=0.5;AN=8;AO=9;CIGAR=1M1X3M;DP=121;DPB=124.4;DPRA=0;EPP=22.5536;EPPR=191.928;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=0.777778;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=354;QR=3384;RO=87;RPL=0;RPP=22.5536;RPPR=191.928;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=87;SRP=191.928;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:25:14,3,0,8:14:549:3,0,8:118,0,316:-21.7858,-16.2942,-60.5356,-26.0002,-61.4387,-71.1452,0,-35.4387,-45.1454,-42.7371 0|1:27:20,1,6,0:20:779:1,6,0:40,223,0:-12.1922,-14.9136,-78.652,0,-60.72,-62.2094,-18.2128,-78.953,-64.0156,-82.2486 0|1:24:13,9,1,1:13:512:9,1,1:362,41,38:-25.9243,0,-39.4105,-26.4527,-38.7345,-68.269,-26.7233,-39.0042,-65.4543,-68.5379 0|1:45:40,4,1,0:40:1544:4,1,0:155,41,0:-0.672956,0,-125.565,-9.32561,-123.385,-135.816,-12.7142,-126.769,-136.117,-139.501 dDocent_Contig_4759 90 . G C 118.8 . AB=0.5;ABP=3.0103;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X2M1X;DP=42;DPB=42;DPRA=1.2;EPP=16.0391;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=55.1667;MQMR=59.6286;NS=4;NUMALT=1;ODDS=0;PAIRED=0.666667;PAIREDR=0.771429;PAO=0;PQA=0;PQR=0;PRO=0;QA=188;QR=1169;RO=35;RPL=0;RPP=16.0391;RPPR=79.0118;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=79.0118;SRR=35;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:7:7,0:7:237:0:0:0,-2.10721,-21.6576 0|0:10:9,0:9:290:0:0:0,-2.70927,-26.256 0|0:13:13,0:13:433:0:0:0,-3.91339,-39.2902 0|1:12:6,6:6:209:6:188:-13.579,0,-15.5387 dDocent_Contig_4760 21 . C T 332.051 . AB=0.119403;ABP=340.204;AC=1;AF=0.125;AN=8;AO=32;CIGAR=1X;DP=813;DPB=813;DPRA=1.47523;EPP=72.4974;EPPR=1698.93;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.99872;PAO=0;PQA=0;PQR=0;PRO=0;QA=1278;QR=31471;RO=781;RPL=0;RPP=72.4974;RPPR=1698.93;RPR=32;RUN=1;SAF=32;SAP=72.4974;SAR=0;SRF=781;SRP=1698.93;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:268:236,32:236:9513:32:1278:-34.6031,0,-774.847 0/0:210:210,0:210:8439:0:0:0,-63.2163,-758.989 0/0:165:165,0:165:6652:0:0:0,-49.6699,-598.347 0/0:170:170,0:170:6867:0:0:0,-51.1751,-617.675 dDocent_Contig_4762 68 . A T 3599.09 . AB=0.02;ABP=303.195;AC=0;AF=0;AN=8;AO=3;CIGAR=1M1D14M1X8M;DP=243;DPB=235.36;DPRA=0;EPP=9.52472;EPPR=155.013;GTI=0;LEN=1;MEANALT=11;MQM=60;MQMR=60;NS=4;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=21;QR=2391;RO=70;RPL=3;RPP=9.52472;RPPR=155.013;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=70;SRP=155.013;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:126:27,1,79,5,0:27:924:1,79,5,0:7,3087,200,0:-245.808,-253.61,-328.308,0,-74.7705,-51.3137,-237.458,-312.132,-58.6047,-310.953,-253.936,-328.609,-75.0951,-312.458,-328.936 0|0:66:28,0,24,2,3:28:955:0,24,2,3:0,930,69,120:-68.0228,-76.4516,-153.936,0,-77.5214,-70.2966,-70.8476,-148.332,-71.9159,-147.73,-66.5626,-144.049,-67.6306,-138.444,-143.146 0|0:24:4,2,10,3,2:4:138:2,10,3,2:14,397,115,78:-31.5468,-32.1217,-42.7287,0,-10.6132,-8.22506,-23.3035,-33.8885,-1.77068,-33.6166,-26.3326,-36.9158,-4.80629,-28.1012,-36.946 0|0:27:11,0,8,1,3:11:374:0,8,1,3:0,307,38,120:-21.9271,-25.2384,-55.5744,0,-30.3585,-27.9503,-22.1195,-52.4565,-27.239,-52.1554,-15.3408,-45.6825,-20.4598,-42.5641,-44.7795 dDocent_Contig_4763 115 . C T 275.648 . AB=0.246154;ABP=39.3908;AC=1;AF=0.125;AN=8;AO=16;CIGAR=1X;DP=163;DPB=163;DPRA=1.9898;EPP=37.7539;EPPR=322.217;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=539;QR=4996;RO=147;RPL=0;RPP=37.7539;RPPR=322.217;RPR=16;RUN=1;SAF=0;SAP=37.7539;SAR=16;SRF=0;SRP=322.217;SRR=147;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:38:38,0:38:1310:0:0:0,-11.4391,-118.202 0/0:20:20,0:20:690:0:0:0,-6.0206,-62.4225 0/1:65:49,16:49:1669:16:539:-29.2638,0,-130.93 0/0:40:40,0:40:1327:0:0:0,-12.0412,-119.723 dDocent_Contig_4765 14 . T C 7568.41 . AB=0.651475;ABP=77.3468;AC=4;AF=0.5;AN=8;AO=243;CIGAR=1X;DP=373;DPB=373;DPRA=0;EPP=530.678;EPPR=285.302;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=9733;QR=4758;RO=130;RPL=0;RPP=530.678;RPPR=285.302;RPR=243;RUN=1;SAF=243;SAP=530.678;SAR=0;SRF=130;SRP=285.302;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:159:47,112:47:1725:112:4507:-357.68,0,-107.656 0/1:109:39,70:39:1421:70:2803:-219.559,0,-95.3587 0/1:73:31,42:31:1129:42:1678:-129.27,0,-79.9325 0/1:32:13,19:13:483:19:745:-57.7295,0,-34.1788 dDocent_Contig_4766 10 . G A 4177.58 . AB=0.467105;ABP=5.8675;AC=3;AF=0.375;AN=8;AO=156;CIGAR=1X;DP=501;DPB=501;DPRA=0;EPP=341.76;EPPR=749.997;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6279;QR=13767;RO=344;RPL=0;RPP=341.76;RPPR=749.997;RPR=156;RUN=1;SAF=156;SAP=341.76;SAR=0;SRF=344;SRP=749.997;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:197:182,14:182:7259:14:567:0,-7.74969,-601.591 0/1:122:60,62:60:2412:62:2498:-188.222,0,-180.495 0/1:88:53,35:53:2144:35:1388:-98.6876,0,-166.636 0/1:94:49,45:49:1952:45:1826:-136.246,0,-147.579 dDocent_Contig_4767 13 . C T 40.4629 . AB=0.157895;ABP=22.325;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=65;DPB=65;DPRA=1.23913;EPP=9.52472;EPPR=137.642;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=123;QR=2499;RO=62;RPL=0;RPP=9.52472;RPPR=137.642;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:16:16,0:16:648:0:0:0,-4.81648,-58.6524 0/0:17:17,0:17:677:0:0:0,-5.11751,-61.2548 0/1:19:16,3:16:643:3:123:-5.74522,0,-52.4844 0/0:13:13,0:13:531:0:0:0,-3.91339,-48.1364 dDocent_Contig_4768 22 . G A 6704.75 . AB=0.205128;ABP=61.9184;AC=0;AF=0;AN=8;AO=16;CIGAR=1M3D7M1X;DP=332;DPB=271.5;DPRA=0;EPP=37.7539;EPPR=194.1;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=612;QR=3427;RO=88;RPL=0;RPP=37.7539;RPPR=194.1;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=88;SRP=194.1;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:146:52,0,91:52:2019:0,91:0,3444:-266.738,-282.391,-448.281,0,-165.996,-138.603 0|0:108:19,0,89:19:744:0,89:0,3453:-278.345,-284.065,-345.241,0,-61.567,-34.7754 0|0:39:7,7,24:7:274:7,24:274,930:-74.283,-53.8637,-74.2857,0,-0.00275528,-15.3033 0|0:39:10,9,20:10:390:9,20:338,750:-58.4103,-33.7344,-63.0864,0,-4.38459,-26.0432 dDocent_Contig_4770 31 . G T 8438.69 . AB=0.813008;ABP=212.354;AC=5;AF=0.625;AN=8;AO=259;CIGAR=1X;DP=308;DPB=308;DPRA=0;EPP=565.422;EPPR=107.241;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=10379;QR=1942;RO=48;RPL=0;RPP=565.422;RPPR=107.241;RPR=259;RUN=1;SAF=259;SAP=565.422;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:84:18,66:18:727:66:2625:-211.087,0,-40.4685 0/1:92:11,80:11:446:80:3220:-262.054,0,-12.6928 0/1:70:16,54:16:649:54:2174:-174.758,0,-37.6712 1/1:62:3,59:3:120:59:2360:-201.368,-7.47617,0 dDocent_Contig_4771 41 . G A 489.079 . AB=0.38;ABP=9.26414;AC=1;AF=0.125;AN=8;AO=19;CIGAR=1X;DP=108;DPB=108;DPRA=2.58621;EPP=44.2683;EPPR=106.094;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=53.6067;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.853933;PAO=0;PQA=0;PQR=0;PRO=0;QA=726;QR=3462;RO=89;RPL=0;RPP=44.2683;RPPR=106.094;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=89;SRP=196.271;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:31:31,0:31:1222:0:0:0,-9.33193,-101.945 0/1:50:31,19:31:1197:19:726:-50.6069,0,-85.6995 0/0:10:10,0:10:399:0:0:0,-3.0103,-34.1741 0/0:17:17,0:17:644:0:0:0,-5.11751,-53.0953 dDocent_Contig_4773 107 . N A 496.174 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=16;CIGAR=1X;DP=16;DPB=16;DPRA=0;EPP=37.7539;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=40;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=554;QR=0;RO=0;RPL=0;RPP=37.7539;RPPR=0;RPR=16;RUN=1;SAF=0;SAP=37.7539;SAR=16;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1:0,1:0:0:1:35:-3.3807,-0.30103,0 1/1:14:0,14:0:0:14:483:-42.3035,-4.21442,0 ./.:.:.:.:.:.:.:. 1/1:1:0,1:0:0:1:36:-3.45449,-0.30103,0 dDocent_Contig_4774 8 . C T 5111.76 . AB=0.41342;ABP=33.0913;AC=4;AF=0.5;AN=8;AO=191;CIGAR=1X;DP=462;DPB=462;DPRA=0;EPP=417.762;EPPR=591.479;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7296;QR=10437;RO=271;RPL=0;RPP=417.762;RPPR=591.479;RPR=191;RUN=1;SAF=191;SAP=417.762;SAR=0;SRF=271;SRP=591.479;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:168:106,62:106:4099:62:2358:-161.863,0,-318.414 0/1:173:97,76:97:3722:76:2897:-208.826,0,-283.012 0/1:59:26,33:26:1003:33:1267:-96.5606,0,-72.8202 0/1:62:42,20:42:1613:20:774:-51.3245,0,-126.771 dDocent_Contig_4775 196 . T C 219.744 . AB=0.119816;ABP=275.445;AC=2;AF=0.25;AN=8;AO=41;CIGAR=1X;DP=392;DPB=392;DPRA=0;EPP=92.0407;EPPR=765.197;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1553;QR=13216;RO=351;RPL=41;RPP=92.0407;RPPR=765.197;RPR=0;RUN=1;SAF=0;SAP=92.0407;SAR=41;SRF=0;SRP=765.197;SRR=351;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:98:88,10:88:3321:10:382:-5.23466,0,-269.533 0/1:119:103,16:103:3834:16:618:-20.1374,0,-309.349 0/0:94:86,8:86:3275:8:296:0,-1.30773,-267.909 0/0:81:74,7:74:2786:7:257:0,-0.902403,-227.441 dDocent_Contig_4776 65 . G C 7424.64 . AB=0.800866;ABP=184.634;AC=5;AF=0.625;AN=8;AO=233;CIGAR=1X;DP=281;DPB=281;DPRA=0;EPP=508.963;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.961373;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=9144;QR=1876;RO=48;RPL=233;RPP=508.963;RPPR=107.241;RPR=0;RUN=1;SAF=233;SAP=508.963;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:83:7,76:7:282:76:2962:-241.702,0,-0.767473 0/1:65:18,47:18:703:47:1856:-147.689,0,-44.0292 0/1:83:21,62:21:812:62:2433:-194.144,0,-48.4074 1/1:50:2,48:2:79:48:1893:-163.088,-7.55426,0 dDocent_Contig_4777 107 . N C 55.097 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=58;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:58:-5.50862,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_4778 63 . T C 2745.42 . AB=0.513889;ABP=3.13094;AC=6;AF=0.75;AN=8;AO=92;CIGAR=1X4M;DP=127;DPB=127;DPRA=0;EPP=202.786;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3306;QR=1163;RO=31;RPL=92;RPP=202.786;RPPR=70.3259;RPR=0;RUN=1;SAF=92;SAP=202.786;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:47:23,4,20:23:863:4,20:149,748:-54.327,-49.0537,-118.541,0,-58.4961,-64.6724 1|1:24:0,0,24:0:0:0,24:0,877:-79.2407,-79.2407,-79.2407,-7.22472,-7.22472,0 1|1:31:0,0,31:0:0:0,31:0,1030:-92.9781,-92.9781,-92.9781,-9.33193,-9.33193,0 0|1:25:8,0,17:8:300:0,17:0,651:-51.394,-53.8022,-78.3719,0,-24.9469,-19.8294 dDocent_Contig_4780 210 . A C 69.3216 . AB=0.1875;ABP=16.582;AC=2;AF=0.25;AN=8;AO=3;CIGAR=1M7I1X1M2X;DP=47;DPB=53;DPRA=1.23077;EPP=9.52472;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0.333333;PQA=0;PQR=0;PRO=0.333333;QA=114;QR=1478;RO=39;RPL=3;RPP=9.52472;RPPR=87.6977;RPR=0;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=87.6977;SRR=39;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:16:13,0,3:13:482:0,3:0,114:-5.81587,-9.72926,-49.1504,0,-39.7991,-38.896 0|1:5:2,2,0:2:80:2,0:64,0:-4.51383,0,-6.00133,-5.11589,-6.60339,-11.73 0|0:6:6,0,0:6:234:0,0:0,0:0,-1.80618,-21.4306,-1.80618,-21.4306,-21.4306 0|0:20:18,0,0:18:682:0,0:0,0:0,-5.41854,-61.3396,-5.41854,-61.3396,-61.3396 dDocent_Contig_4782 57 . C A 5028.89 . AB=0.719212;ABP=87.7405;AC=5;AF=0.625;AN=8;AO=159;CIGAR=1X;DP=216;DPB=216;DPRA=0;EPP=348.274;EPPR=126.784;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.947368;PAO=0;PQA=0;PQR=0;PRO=0;QA=6316;QR=2237;RO=57;RPL=159;RPP=348.274;RPPR=126.784;RPR=0;RUN=1;SAF=159;SAP=348.274;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:103:16,87:16:632:87:3445:-279.103,0,-26.2073 0/1:79:38,41:38:1483:41:1635:-123.599,0,-109.931 0/1:21:3,18:3:122:18:715:-58.3485,0,-5.05086 1/1:13:0,13:0:0:13:521:-47.2369,-3.91339,0 dDocent_Contig_4783 10 . T C 2197.1 . AB=0.280864;ABP=138.151;AC=4;AF=0.5;AN=8;AO=91;CIGAR=1X;DP=324;DPB=324;DPRA=0;EPP=200.614;EPPR=506.792;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.989011;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3595;QR=9212;RO=232;RPL=0;RPP=200.614;RPPR=506.792;RPR=91;RUN=1;SAF=91;SAP=200.614;SAR=0;SRF=232;SRP=506.792;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:44:33,10:33:1337:10:400:-23.0061,0,-107.233 0/1:105:66,39:66:2621:39:1572:-110.107,0,-204.399 0/1:90:70,20:70:2760:20:789:-44.2298,0,-221.43 0/1:85:63,22:63:2494:22:834:-49.7647,0,-199.02 dDocent_Contig_4784 9 . A T 183.845 . AB=0.0384615;ABP=628.394;AC=2;AF=0.25;AN=8;AO=17;CIGAR=1X3M;DP=440;DPB=440;DPRA=0;EPP=39.9253;EPPR=704.396;GTI=0;LEN=1;MEANALT=6.5;MQM=60;MQMR=59.9505;NS=4;NUMALT=5;ODDS=5.55112e-17;PAIRED=0.470588;PAIREDR=0.609907;PAO=0;PQA=0;PQR=0;PRO=0;QA=653;QR=12650;RO=323;RPL=0;RPP=39.9253;RPPR=704.396;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=323;SRP=704.396;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:158:113,10,13,0,7,8:113:4452:10,13,0,7,8:393,504,0,269,325:-7.38579,-9.1162,-372.331,0,-333.937,-362.31,-41.4022,-375.341,-366.223,-407.627,-19.3203,-353.258,-344.14,-385.544,-383.437,-14.5939,-348.535,-339.417,-380.821,-358.738,-378.413 0|0:102:79,2,1,6,4,3:79:3117:2,1,6,4,3:80,36,235,152,123:0,-17.1903,-273.06,-20.8453,-270.725,-277.014,-4.46299,-254.344,-257.997,-259.128,-11.3181,-261.197,-264.85,-248.47,-266.583,-13.6261,-263.509,-267.162,-250.782,-257.635,-269.196 0|1:123:93,5,9,3,3,3:93:3602:5,9,3,3,3:197,351,120,117,123:-0.855538,-13.0958,-307.466,0,-280.119,-293.167,-18.9722,-299.093,-285.997,-313.946,-19.2338,-299.353,-286.258,-305.232,-314.207,-18.697,-298.818,-285.723,-304.697,-304.957,-313.672 0|0:57:38,0,0,7,3,8:38:1479:0,0,7,3,8:0,0,277,115,314:-14.3888,-25.828,-147.38,-25.828,-147.38,-147.38,-3.0381,-124.596,-124.596,-122.489,-16.3891,-137.941,-137.941,-115.157,-137.038,0,-121.558,-121.558,-98.7736,-112.119,-119.15 dDocent_Contig_4785 10 . T C 22908.9 . AB=0.525891;ABP=11.6684;AC=4;AF=0.5;AN=8;AO=782;CIGAR=1X2M;DP=1487;DPB=1487;DPRA=0;EPP=1701.1;EPPR=1338.47;GTI=0;LEN=1;MEANALT=4.75;MQM=56.7174;MQMR=59.2081;NS=4;NUMALT=2;ODDS=0;PAIRED=0.886189;PAIREDR=0.878049;PAO=0;PQA=0;PQR=0;PRO=0;QA=30407;QR=24283;RO=615;RPL=0;RPP=1701.1;RPPR=1338.47;RPR=782;RUN=1;SAF=782;SAP=1701.1;SAR=0;SRF=615;SRP=1338.47;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:543:260,21,245:260:10282:21,245:817,9369:-684.548,-696.3,-1526.8,0,-770.3,-763.063 0|1:432:189,1,224:189:7429:1,224:40,8781:-660.951,-715.736,-1321.43,0,-603.894,-538.573 0|1:340:113,7,208:113:4494:7,208:272,8182:-635.762,-649.592,-1017.48,0,-349.825,-307.396 0|1:172:53,9,105:53:2078:9,105:363,4075:-317.026,-304.308,-472.472,0,-142.205,-139.269 dDocent_Contig_4786 9 . A G 324.328 . AB=0.304348;ABP=18.305;AC=1;AF=0.125;AN=8;AO=18;CIGAR=1X;DP=162;DPB=162;DPRA=1.20952;EPP=42.0968;EPPR=315.702;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.833333;PAIREDR=0.972222;PAO=0;PQA=0;PQR=0;PRO=0;QA=681;QR=5514;RO=144;RPL=0;RPP=42.0968;RPPR=315.702;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=144;SRP=315.702;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:46:32,14:32:1217:14:526:-33.8308,0,-95.978 0/0:44:42,2:42:1620:2:78:0,-5.84185,-138.661 0/0:35:35,0:35:1332:0:0:0,-10.536,-120.168 0/0:37:35,2:35:1345:2:77:0,-3.82897,-114.028 dDocent_Contig_4787 42 . G A 1543.21 . AB=0.158059;ABP=651.968;AC=4;AF=0.5;AN=8;AO=101;CIGAR=1X;DP=639;DPB=639;DPRA=0;EPP=213.729;EPPR=1171.26;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=2.77556e-17;PAIRED=1;PAIREDR=0.998141;PAO=0;PQA=0;PQR=0;PRO=0;QA=3921;QR=21392;RO=538;RPL=1;RPP=213.729;RPPR=1171.26;RPR=100;RUN=1;SAF=101;SAP=222.329;SAR=0;SRF=538;SRP=1171.26;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:250:223,27:223:8751:27:1045:-19.0821,0,-711.854 0/1:195:167,28:167:6725:28:1046:-35.7229,0,-546.231 0/1:115:86,29:86:3430:29:1164:-70.4227,0,-274.133 0/1:79:62,17:62:2486:17:666:-36.491,0,-200.1 dDocent_Contig_4788 28 . G T 140.381 . AB=0.122807;ABP=143.889;AC=1;AF=0.125;AN=8;AO=14;CIGAR=1X;DP=524;DPB=524;DPRA=0.834146;EPP=33.4109;EPPR=1108.29;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=549;QR=19988;RO=509;RPL=0;RPP=33.4109;RPPR=1108.29;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=509;SRP=1108.29;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:114:100,14:100:4000:14:549:-15.436,0,-325.664 0/0:158:157,0:157:6215:0:0:0,-47.2617,-558.691 0/0:166:166,0:166:6481:0:0:0,-49.971,-583.023 0/0:86:86,0:86:3292:0:0:0,-25.8886,-296.355 dDocent_Contig_4790 26 . T C 11942.6 . AB=0.506266;ABP=3.28241;AC=4;AF=0.5;AN=8;AO=404;CIGAR=1X;DP=798;DPB=798;DPRA=0;EPP=880.285;EPPR=856.399;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=5.55112e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=16023;QR=15650;RO=393;RPL=0;RPP=880.285;RPPR=856.399;RPR=404;RUN=1;SAF=404;SAP=880.285;SAR=0;SRF=393;SRP=856.399;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:203:119,83:119:4761:83:3283:-234.314,0,-367.18 0/1:220:102,118:102:4047:118:4693:-356.045,0,-297.987 0/1:207:103,104:103:4108:104:4160:-312.042,0,-307.374 0/1:168:69,99:69:2734:99:3887:-299.261,0,-195.595 dDocent_Contig_4791 14 . T C 2504.32 . AB=0.179348;ABP=660.306;AC=4;AF=0.5;AN=8;AO=132;CIGAR=1X;DP=736;DPB=736;DPRA=0;EPP=289.645;EPPR=1314.58;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5315;QR=23381;RO=604;RPL=0;RPP=289.645;RPPR=1314.58;RPR=132;RUN=1;SAF=132;SAP=289.645;SAR=0;SRF=604;SRP=1314.58;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:264:192,72:192:7378:72:2882:-179.999,0,-584.298 0/1:223:193,30:193:7519:30:1217:-42.6712,0,-609.317 0/1:154:136,18:136:5284:18:729:-19.5761,0,-429.134 0/1:95:83,12:83:3200:12:487:-15.5836,0,-259.518 dDocent_Contig_4792 29 . G T 4622.27 . AB=0.759259;ABP=34.5369;AC=7;AF=0.875;AN=8;AO=141;CIGAR=1X2M;DP=162;DPB=162;DPRA=0;EPP=309.188;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5551;QR=588;RO=15;RPL=0;RPP=309.188;RPPR=35.5824;RPR=141;RUN=1;SAF=141;SAP=309.188;SAR=0;SRF=15;SRP=35.5824;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:54:9,4,41:9:352:4,41:145,1615:-130.175,-121.055,-148.792,0,-17.1384,-16.6195 1|1:80:6,2,72:6:236:2,72:62,2836:-233.769,-230.604,-249.416,-2.19806,-16.722,0 1|1:12:0,0,12:0:0:0,12:0,468:-42.4684,-42.4684,-42.4684,-3.61236,-3.61236,0 1|1:16:0,0,16:0:0:0,16:0,632:-57.2137,-57.2137,-57.2137,-4.81648,-4.81648,0 dDocent_Contig_4793 49 . C T 45.9962 . AB=0.181818;ABP=22.3561;AC=2;AF=0.25;AN=8;AO=4;CIGAR=1X;DP=51;DPB=51;DPRA=0.758621;EPP=11.6962;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=154;QR=1818;RO=47;RPL=0;RPP=11.6962;RPPR=105.07;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:20:20,0:20:786:0:0:0,-6.0206,-71.0593 0/1:11:9,2:9:362:2:78:-4.09197,0,-29.6317 0/1:11:9,2:9:343:2:76:-3.90334,0,-27.9122 0/0:9:9,0:9:327:0:0:0,-2.70927,-29.7665 dDocent_Contig_4794 98 . N C 170.825 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=5;CIGAR=1X;DP=5;DPB=5;DPRA=0;EPP=13.8677;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=0.8;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=173;QR=0;RO=0;RPL=5;RPP=13.8677;RPPR=0;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:68:-6.45788,-0.60206,0 1/1:1:0,1:0:0:1:35:-3.49863,-0.30103,0 1/1:2:0,2:0:0:2:70:-6.6474,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_4796 148 . A G 10821.1 . AB=0.839196;ABP=201.88;AC=6;AF=0.75;AN=8;AO=327;CIGAR=1X;DP=365;DPB=365;DPRA=0;EPP=713.082;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=12964;QR=1460;RO=37;RPL=0;RPP=713.082;RPPR=83.3548;RPR=327;RUN=1;SAF=0;SAP=713.082;SAR=327;SRF=0;SRP=83.3548;SRR=37;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:153:24,128:24:944:128:5100:-413.046,0,-39.4211 1/1:122:5,117:5:194:117:4625:-398.341,-18.896,0 0/1:46:7,39:7:282:39:1543:-125.263,0,-11.905 1/1:44:1,43:1:40:43:1696:-148.859,-9.24964,0 dDocent_Contig_4797 9 . G A 1080.45 . AB=0.455556;ABP=4.55446;AC=4;AF=0.5;AN=8;AO=41;CIGAR=1X;DP=90;DPB=90;DPRA=0;EPP=92.0407;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.95122;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1568;QR=1857;RO=49;RPL=0;RPP=92.0407;RPPR=109.412;RPR=41;RUN=1;SAF=41;SAP=92.0407;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:6,13:6:234:13:503:-39.8992,0,-15.7115 0/1:34:21,13:21:789:13:490:-34.2074,0,-61.0978 0/1:28:20,8:20:757:8:309:-19.7441,0,-60.0273 0/1:9:2,7:2:77:7:266:-21.5924,0,-4.59987 dDocent_Contig_4798 38 . G C 406.642 . AB=0.176;ABP=116.987;AC=1;AF=0.125;AN=8;AO=33;CIGAR=1X;DP=429;DPB=429;DPRA=2.77536;EPP=74.6689;EPPR=862.913;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1325;QR=15542;RO=396;RPL=0;RPP=74.6689;RPPR=862.913;RPR=33;RUN=1;SAF=33;SAP=74.6689;SAR=0;SRF=396;SRP=862.913;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:125:103,22:103:4039:22:882:-42.0621,0,-325.886 0/0:156:152,4:152:5945:4:160:0,-32.1773,-520.103 0/0:102:95,7:95:3737:7:283:0,-4.86148,-310.522 0/0:46:46,0:46:1821:0:0:0,-13.8474,-164.105 dDocent_Contig_4799 164 . A G 114.459 . AB=0.230769;ABP=19.3799;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=63;DPB=63;DPRA=2.10811;EPP=4.45795;EPPR=110.022;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=229;QR=2227;RO=57;RPL=4;RPP=4.45795;RPPR=110.022;RPR=2;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=126.784;SRR=57;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:18:18,0:18:702:0:0:0,-5.41854,-63.5056 0/0:11:11,0:11:437:0:0:0,-3.31133,-39.6843 0/1:26:20,6:20:777:6:229:-13.1449,0,-62.4215 0/0:8:8,0:8:311:0:0:0,-2.40824,-28.3495 dDocent_Contig_4800 8 . C T 330.353 . AB=0.119883;ABP=432.225;AC=4;AF=0.5;AN=8;AO=41;CIGAR=1X;DP=342;DPB=342;DPRA=0;EPP=92.0407;EPPR=656.623;GTI=0;LEN=1;MEANALT=1;MQM=57.878;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.966777;PAO=0;PQA=0;PQR=0;PRO=0;QA=1563;QR=11595;RO=301;RPL=0;RPP=92.0407;RPPR=656.623;RPR=41;RUN=1;SAF=41;SAP=92.0407;SAR=0;SRF=301;SRP=656.623;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:115:97,18:97:3736:18:688:-27.5537,0,-301.729 0/1:111:100,11:100:3857:11:409:-3.70954,0,-313.814 0/1:57:52,5:52:1997:5:193:-0.571616,0,-162.807 0/1:59:52,7:52:2005:7:273:-7.16383,0,-162.926 dDocent_Contig_4801 15 . A G 451.899 . AB=0.361905;ABP=20.4028;AC=2;AF=0.25;AN=8;AO=56;CIGAR=1X;DP=261;DPB=261;DPRA=0;EPP=124.613;EPPR=448.162;GTI=0;LEN=1;MEANALT=1;MQM=26.75;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=0.321429;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2251;QR=8180;RO=205;RPL=0;RPP=124.613;RPPR=448.162;RPR=56;RUN=1;SAF=56;SAP=124.613;SAR=0;SRF=205;SRP=448.162;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:94:81,13:81:3246:13:520:0,-15.3235,-279.229 0/0:62:57,5:57:2258:5:197:0,-8.82506,-193.551 0/1:75:47,28:47:1883:28:1127:-39.6163,0,-147.096 0/1:30:20,10:20:793:10:407:-8.97145,0,-62.6561 dDocent_Contig_4802 16 . C G 20409.2 . AB=0.324709;ABP=209.317;AC=4;AF=0.5;AN=8;AO=251;CIGAR=1M1X1M1X1M;DP=773;DPB=777.2;DPRA=0;EPP=548.05;EPPR=131.127;GTI=0;LEN=1;MEANALT=3.5;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=9930;QR=2344;RO=59;RPL=0;RPP=548.05;RPPR=131.127;RPR=251;RUN=1;SAF=251;SAP=548.05;SAR=0;SRF=59;SRP=131.127;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:217:31,61,0,123:31:1225:61,0,123:2411,0,4943:-495.584,-306.518,-388.953,-504.916,-407.316,-605.714,-97.6,0,-198.399,-161.373 1|0:213:0,75,3,135:0:0:75,3,135:2988,114,5378:-688.894,-442.847,-420.27,-679.545,-433.498,-678.641,-246.064,0,-236.715,-205.425 1|0:217:17,77,8,115:17:681:77,8,115:3028,304,4573:-564.318,-320.377,-353.301,-544.504,-351.549,-598.199,-192.955,0,-224.128,-214.44 1|0:126:11,38,10,66:11:438:38,10,66:1503,368,2615:-299.519,-179.145,-203.773,-272.743,-185.126,-305.799,-87.6231,0,-93.606,-103.823 dDocent_Contig_4803 76 . G A 1744.88 . AB=0.677419;ABP=28.4375;AC=4;AF=0.5;AN=8;AO=63;CIGAR=1X;DP=93;DPB=93;DPRA=0;EPP=139.813;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2317;QR=1089;RO=30;RPL=63;RPP=139.813;RPPR=68.1545;RPR=0;RUN=1;SAF=63;SAP=139.813;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:8,13:8:290:13:479:-37.1319,0,-20.1269 0/1:27:10,17:10:363:17:625:-48.4576,0,-24.8873 0/1:20:5,15:5:177:15:552:-43.999,0,-10.2551 0/1:25:7,18:7:259:18:661:-52.2978,0,-16.1404 dDocent_Contig_4804 13 . T C 4671.6 . AB=0.8;ABP=69.4574;AC=6;AF=0.75;AN=8;AO=138;CIGAR=1X;DP=156;DPB=156;DPRA=0;EPP=302.673;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5547;QR=710;RO=18;RPL=0;RPP=302.673;RPPR=42.0968;RPR=138;RUN=1;SAF=138;SAP=302.673;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:40:0,40:0:0:40:1602:-144.407,-12.0412,0 0/1:40:8,32:8:307:32:1294:-104.681,0,-15.9452 0/1:45:9,36:9:362:36:1451:-117.292,0,-19.3976 1/1:31:1,30:1:41:30:1200:-104.178,-5.23736,0 dDocent_Contig_4805 32 . C T 97.8141 . AB=0.104046;ABP=238.596;AC=2;AF=0.25;AN=8;AO=21;CIGAR=1X;DP=227;DPB=227;DPRA=5.97222;EPP=48.6112;EPPR=450.334;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=840;QR=8261;RO=206;RPL=0;RPP=48.6112;RPPR=450.334;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=206;SRP=450.334;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:77:68,9:68:2733:9:361:-9.67478,0,-222.896 0/1:96:87,9:87:3523:9:356:-3.50108,0,-288.187 0/0:42:39,3:39:1521:3:123:0,-1.17847,-125.663 0/0:12:12,0:12:484:0:0:0,-3.61236,-43.9109 dDocent_Contig_4806 14 . A T 5412.72 . AB=0.12;ABP=128.435;AC=1;AF=0.125;AN=8;AO=12;CIGAR=1X4M1X1M1X17M;DP=233;DPB=231.6;DPRA=0;EPP=29.068;EPPR=37.7539;GTI=0;LEN=1;MEANALT=6;MQM=60;MQMR=60;NS=4;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=431;QR=629;RO=16;RPL=0;RPP=29.068;RPPR=37.7539;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:97:6,0,2,12,68:6:235:0,2,12,68:0,79,423,2656:-231.601,-233.407,-252.732,-226.906,-246.231,-245.629,-198.988,-218.312,-211.811,-214.7,-15.0825,-34.412,-27.9092,0,-13.942 1|0:100:9,12,9,0,65:9:354:12,9,0,65:431,332,0,2542:-212.298,-179.853,-205.361,-187.861,-181.827,-214.272,-215.007,-208.973,-216.981,-244.128,-6.02377,0,-8.00358,-35.1496,-15.5827 0|0:22:1,0,4,0,16:1:40:0,4,0,16:0,160,0,643:-62.5794,-62.8804,-66.1755,-49.7004,-52.9954,-51.7913,-62.8804,-66.1755,-52.9954,-66.1755,-9.89099,-13.1867,0,-13.1867,-8.37025 0|0:14:0,0,0,4,10:0:0:0,0,4,10:0,0,138,374:-42.1914,-42.1914,-42.1914,-42.1914,-42.1914,-42.1914,-30.9923,-30.9923,-30.9923,-29.7882,-11.5522,-11.5522,-11.5522,0,-8.54188 dDocent_Contig_4807 12 . T A 4478.57 . AB=0.508418;ABP=3.19308;AC=4;AF=0.5;AN=8;AO=151;CIGAR=1X;DP=297;DPB=297;DPRA=0;EPP=330.903;EPPR=320.045;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6041;QR=5864;RO=146;RPL=0;RPP=330.903;RPPR=320.045;RPR=151;RUN=1;SAF=151;SAP=330.903;SAR=0;SRF=146;SRP=320.045;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:72:45,27:45:1804:27:1086:-76.3519,0,-140.896 0/1:73:23,50:23:922:50:1997:-157.951,0,-61.3082 0/1:86:38,48:38:1518:48:1920:-147.112,0,-110.976 0/1:66:40,26:40:1620:26:1038:-73.84,0,-126.156 dDocent_Contig_4808 16 . C T 67.9248 . AB=0.12766;ABP=59.6072;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=93;DPB=93;DPRA=3.06522;EPP=16.0391;EPPR=191.928;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.816092;PAO=0;PQA=0;PQR=0;PRO=0;QA=244;QR=3446;RO=87;RPL=0;RPP=16.0391;RPPR=191.928;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=87;SRP=191.928;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:47:41,6:41:1616:6:244:-8.19042,0,-131.524 0/0:19:19,0:19:744:0:0:0,-5.71957,-67.285 0/0:16:16,0:16:637:0:0:0,-4.81648,-57.6629 0/0:11:11,0:11:449:0:0:0,-3.31133,-40.7659 dDocent_Contig_4809 107 . N A 532.501 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=17;CIGAR=1X;DP=17;DPB=17;DPRA=0;EPP=39.9253;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=1.69407e-21;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=574;QR=0;RO=0;RPL=0;RPP=39.9253;RPPR=0;RPR=17;RUN=1;SAF=0;SAP=39.9253;SAR=17;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:6:0,6:0:0:6:201:-18.4192,-1.80618,0 ./.:.:.:.:.:.:.:. 1/1:7:0,7:0:0:7:244:-22.2999,-2.10721,0 1/1:4:0,4:0:0:4:129:-11.9288,-1.20412,0 dDocent_Contig_4812 80 . T C 6503.26 . AB=0.642202;ABP=60.4447;AC=4;AF=0.5;AN=8;AO=210;CIGAR=1X;DP=327;DPB=327;DPRA=0;EPP=459.02;EPPR=254.901;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=8393;QR=4649;RO=116;RPL=210;RPP=459.02;RPPR=254.901;RPR=0;RUN=1;SAF=210;SAP=459.02;SAR=0;SRF=116;SRP=254.901;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:106:54,52:54:2157:52:2074:-154.933,0,-162.392 0/1:65:32,32:32:1282:32:1291:-96.9571,0,-96.1541 0/1:76:18,58:18:733:58:2311:-185.269,0,-43.4146 0/1:80:12,68:12:477:68:2717:-220.565,0,-19.1977 dDocent_Contig_4813 12 . A T 2735.86 . AB=0.375479;ABP=38.1615;AC=4;AF=0.5;AN=8;AO=98;CIGAR=1X;DP=261;DPB=261;DPRA=0;EPP=215.815;EPPR=356.96;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3982;QR=6533;RO=163;RPL=0;RPP=215.815;RPPR=356.96;RPR=98;RUN=1;SAF=98;SAP=215.815;SAR=0;SRF=163;SRP=356.96;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:82:56,26:56:2258:26:1061:-71.091,0,-178.694 0/1:59:31,28:31:1250:28:1132:-84.398,0,-95.008 0/1:88:58,30:58:2302:30:1222:-83.7569,0,-180.853 0/1:32:18,14:18:723:14:567:-41.7385,0,-55.7605 dDocent_Contig_4814 1 . N G 221.576 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=6;CIGAR=1X;DP=6;DPB=6;DPRA=0;EPP=16.0391;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=8.76405;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=242;QR=0;RO=0;RPL=0;RPP=16.0391;RPPR=0;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:6:0,6:0:0:6:242:-22.1575,-1.80618,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_4815 110 . C G 8317.36 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=295;CIGAR=1X;DP=320;DPB=320;DPRA=0;EPP=643.595;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=10095;QR=858;RO=25;RPL=0;RPP=643.595;RPPR=57.2971;RPR=295;RUN=1;SAF=0;SAP=643.595;SAR=295;SRF=0;SRP=57.2971;SRR=25;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:116:9,107:9:311:107:3660:-301.297,-6.59424,0 1/1:106:10,96:10:346:96:3286:-264.502,-0.434734,0 1/1:55:3,52:3:101:52:1795:-152.413,-7.13288,0 1/1:43:3,40:3:100:40:1354:-112.825,-3.61392,0 dDocent_Contig_4816 20 . C A 6710.91 . AB=0.73;ABP=140.855;AC=4;AF=0.5;AN=8;AO=219;CIGAR=1M1I5M1X1M;DP=300;DPB=327.875;DPRA=0;EPP=478.563;EPPR=168.042;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=8526;QR=3019;RO=76;RPL=0;RPP=478.563;RPPR=168.042;RPR=219;RUN=1;SAF=219;SAP=478.563;SAR=0;SRF=76;SRP=168.042;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:81:25,56:25:1003:56:2202:-173.976,0,-66.1858 0|1:93:17,76:17:678:76:2956:-238.153,0,-33.3569 0|1:77:23,51:23:902:51:2006:-158.079,0,-58.8263 0|1:49:11,36:11:436:36:1362:-108.28,0,-25.0386 dDocent_Contig_4817 1 . N G 874.043 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=26;CIGAR=1X;DP=26;DPB=26;DPRA=0;EPP=11.3621;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=49.4615;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=0.153846;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1003;QR=0;RO=0;RPL=0;RPP=59.4686;RPPR=0;RPR=26;RUN=1;SAF=18;SAP=11.3621;SAR=8;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:110:-10.0994,-0.90309,0 1/1:5:0,5:0:0:5:196:-14.7386,-1.50515,0 1/1:16:0,16:0:0:16:622:-55.0259,-4.81648,0 1/1:2:0,2:0:0:2:75:-6.93784,-0.60206,0 dDocent_Contig_4820 49 . C T 2126.63 . AB=0.208163;ABP=365.496;AC=4;AF=0.5;AN=8;AO=102;CIGAR=1X;DP=490;DPB=490;DPRA=0;EPP=224.5;EPPR=828.259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.989691;PAO=0;PQA=0;PQR=0;PRO=0;QA=4071;QR=15523;RO=388;RPL=0;RPP=224.5;RPPR=811.156;RPR=102;RUN=1;SAF=102;SAP=224.5;SAR=0;SRF=386;SRP=828.259;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:207:174,33:174:6977:33:1330:-57.6469,0,-565.282 0/1:175:142,33:142:5632:33:1302:-64.7649,0,-454.018 0/1:74:45,29:45:1825:29:1157:-82.1308,0,-142.177 0/1:34:27,7:27:1089:7:282:-15.5179,0,-88.0614 dDocent_Contig_4821 8 . T C 275.054 . AB=0.131455;ABP=254.3;AC=3;AF=0.375;AN=8;AO=30;CIGAR=1X;DP=249;DPB=249;DPRA=0;EPP=68.1545;EPPR=478.563;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1144;QR=8398;RO=219;RPL=0;RPP=68.1545;RPPR=478.563;RPR=30;RUN=1;SAF=30;SAP=68.1545;SAR=0;SRF=219;SRP=478.563;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:83:68,15:68:2605:15:561:-25.8395,0,-209.658 0/1:61:55,6:55:2101:6:234:-3.06827,0,-170.958 0/1:69:62,7:62:2390:7:271:-3.98524,0,-194.537 0/0:36:34,2:34:1302:2:78:0,-3.43361,-110.063 dDocent_Contig_4822 27 . C A 3466.79 . AB=0.0512821;ABP=207.63;AC=0;AF=0;AN=8;AO=6;CIGAR=1X1M1X1M;DP=270;DPB=270;DPRA=0;EPP=16.0391;EPPR=285.302;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=4;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=237;QR=5086;RO=130;RPL=0;RPP=16.0391;RPPR=285.302;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=130;SRP=285.302;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:117:74,6,0,36,0:74:2903:6,0,36,0:237,0,1431,0:-95.5545,-98.3278,-335.251,-117.831,-337.057,-356.56,0,-219.254,-238.757,-227.92,-117.831,-337.057,-356.56,-238.757,-356.56 0|0:62:24,0,0,37,0:24:935:0,0,37,0:0,0,1445,0:-111.526,-118.751,-195.594,-118.751,-195.594,-195.594,0,-76.8244,-76.8244,-65.6863,-118.751,-195.594,-195.594,-76.8244,-195.594 0|0:50:15,0,5,30,0:15:596:0,5,30,0:0,196,1190,0:-93.4428,-97.9583,-147.028,-81.8419,-130.911,-129.406,0,-49.0732,-32.9575,-40.0423,-97.9583,-147.028,-130.911,-49.0732,-147.028 0|0:41:17,0,1,18,4:17:652:0,1,18,4:0,39,713,164:-53.554,-58.6715,-112.175,-55.466,-108.97,-108.668,0,-53.4952,-50.2893,-48.0767,-45.1328,-98.6371,-95.4312,-39.9544,-97.433 dDocent_Contig_4823 15 . A T 79.794 . AB=0.12963;ABP=67.3502;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=247;DPB=247;DPRA=0.839378;EPP=18.2106;EPPR=524.164;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=284;QR=9291;RO=240;RPL=0;RPP=18.2106;RPPR=524.164;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=240;SRP=524.164;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:73:73,0:73:2726:0:0:0,-21.9752,-245.48 0/1:54:47,7:47:1877:7:284:-9.67837,0,-152.88 0/0:69:69,0:69:2706:0:0:0,-20.7711,-243.664 0/0:51:51,0:51:1982:0:0:0,-15.3525,-178.569 dDocent_Contig_4825 13 . C A 20413.2 . AB=0.890805;ABP=464.66;AC=6;AF=0.75;AN=8;AO=611;CIGAR=1X;DP=660;DPB=660;DPRA=0;EPP=1329.78;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=24342;QR=1978;RO=49;RPL=0;RPP=1329.78;RPPR=109.412;RPR=611;RUN=1;SAF=611;SAP=1329.78;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:179:8,171:8:320:171:6771:-579.925,-24.7171,0 0/1:242:24,218:24:971:218:8754:-714.48,0,-14.8391 1/1:133:3,130:3:120:130:5174:-454.33,-28.8497,0 0/1:106:14,92:14:567:92:3643:-295.985,0,-19.4633 dDocent_Contig_4826 32 . T G 15868 . AB=0.820755;ABP=381.912;AC=5;AF=0.625;AN=8;AO=485;CIGAR=1X;DP=565;DPB=565;DPRA=0;EPP=1056.17;EPPR=174.557;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.997938;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=19236;QR=3007;RO=79;RPL=0;RPP=1056.17;RPPR=174.557;RPR=485;RUN=1;SAF=485;SAP=1056.17;SAR=0;SRF=79;SRP=174.557;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:223:38,185:38:1437:185:7365:-595.363,0,-62.4662 1/1:141:3,137:3:118:137:5444:-478.782,-31.5392,0 0/1:121:23,98:23:884:98:3854:-310.438,0,-43.4542 0/1:80:15,65:15:568:65:2573:-207.611,0,-27.3747 dDocent_Contig_4828 128 . C T 831.074 . AB=0.269006;ABP=82.2627;AC=4;AF=0.5;AN=8;AO=46;CIGAR=1X;DP=171;DPB=171;DPRA=0;EPP=102.898;EPPR=274.444;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=58.352;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.904;PAO=0;PQA=0;PQR=0;PRO=0;QA=1563;QR=4102;RO=125;RPL=0;RPP=102.898;RPPR=274.444;RPR=46;RUN=1;SAF=0;SAP=102.898;SAR=46;SRF=0;SRP=274.444;SRR=125;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:44:37,7:37:1217:7:243:-8.96357,0,-96.2142 0/1:48:36,12:36:1187:12:415:-23.2325,0,-92.6732 0/1:45:29,16:29:967:16:534:-34.8288,0,-73.3467 0/1:34:23,11:23:731:11:371:-23.4805,0,-55.8226 dDocent_Contig_4829 46 . T C 6984.61 . AB=0.792857;ABP=107.303;AC=6;AF=0.75;AN=8;AO=206;CIGAR=1X;DP=235;DPB=235;DPRA=0;EPP=450.334;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=8259;QR=1155;RO=29;RPL=0;RPP=450.334;RPPR=65.983;RPR=206;RUN=1;SAF=206;SAP=450.334;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:49:0,49:0:0:49:1935:-174.338,-14.7505,0 0/1:51:7,44:7:274:44:1782:-145.237,0,-9.67073 0/1:89:22,67:22:881:67:2705:-216.761,0,-52.8079 1/1:46:0,46:0:0:46:1837:-165.523,-13.8474,0 dDocent_Contig_4830 77 . C G 34.2563 . AB=0.121212;ABP=44.1367;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=92;DPB=92;DPRA=1.67797;EPP=11.6962;EPPR=194.1;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.965909;PAO=0;PQA=0;PQR=0;PRO=0;QA=163;QR=3487;RO=88;RPL=4;RPP=11.6962;RPPR=194.1;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=88;SRP=194.1;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:26:26,0:26:1042:0:0:0,-7.82678,-94.0697 0/1:33:29,4:29:1159:4:163:-5.12444,0,-94.658 0/0:22:22,0:22:849:0:0:0,-6.62266,-76.712 0/0:11:11,0:11:437:0:0:0,-3.31133,-39.6828 dDocent_Contig_4831 121 . A G 181.172 . AB=0.246914;ABP=48.0751;AC=2;AF=0.25;AN=8;AO=22;CIGAR=1X2M1X2M1X2M1X;DP=150;DPB=150;DPRA=1.75;EPP=50.7827;EPPR=274.444;GTI=0;LEN=1;MEANALT=1.66667;MQM=26.5;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=0;PAIREDR=0.984;PAO=0;PQA=0;PQR=0;PRO=0;QA=725;QR=4103;RO=125;RPL=0;RPP=50.7827;RPPR=274.444;RPR=22;RUN=1;SAF=0;SAP=50.7827;SAR=22;SRF=0;SRP=274.444;SRR=125;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:45:40,2:40:1324:2:69:0,-7.99727,-114.548 0|1:64:50,14:50:1637:14:469:-11.6418,0,-128.35 0|0:24:24,0:24:805:0:0:0,-7.22472,-72.7637 0|1:17:11,6:11:337:6:187:-9.87329,0,-25.5123 dDocent_Contig_4832 29 . G A 104.743 . AB=0.128571;ABP=86.8912;AC=1;AF=0.125;AN=8;AO=18;CIGAR=1X;DP=226;DPB=226;DPRA=0;EPP=42.0968;EPPR=452.505;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.995169;PAO=0;PQA=0;PQR=0;PRO=0;QA=717;QR=8232;RO=207;RPL=0;RPP=42.0968;RPPR=452.505;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=207;SRP=452.505;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:70:61,9:61:2462:9:362:-11.8723,0,-200.646 0/0:71:65,5:65:2576:5:195:0,-3.5553,-214.051 0/0:49:46,3:46:1834:3:119:0,-3.65507,-154.174 0/0:36:35,1:35:1360:1:41:0,-6.74251,-118.554 dDocent_Contig_4833 19 . A C 168.397 . AB=0.169231;ABP=64.7803;AC=2;AF=0.25;AN=8;AO=12;CIGAR=1X;DP=157;DPB=157;DPRA=8.38889;EPP=29.068;EPPR=317.874;GTI=0;LEN=1;MEANALT=1;MQM=58.3333;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=475;QR=5823;RO=145;RPL=0;RPP=29.068;RPPR=317.874;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=145;SRP=317.874;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:86:85,1:85:3422:1:41:0,-22.1425,-304.269 0/1:39:34,5:34:1368:5:194:-6.08925,0,-111.636 0/1:26:20,6:20:796:6:240:-14.1484,0,-64.1342 0/0:6:6,0:6:237:0:0:0,-1.80618,-21.7003 dDocent_Contig_4834 86 . C T 70.3464 . AB=0.171429;ABP=35.8306;AC=2;AF=0.25;AN=8;AO=6;CIGAR=1X;DP=84;DPB=84;DPRA=0.714286;EPP=16.0391;EPPR=172.385;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=216;QR=2713;RO=78;RPL=6;RPP=16.0391;RPPR=172.385;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=78;SRP=172.385;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:30:30,0:30:1026:0:0:0,-9.0309,-92.6427 0/0:19:19,0:19:682:0:0:0,-5.71957,-61.7099 0/1:26:21,5:21:719:5:180:-8.72528,0,-57.2003 0/1:9:8,1:8:286:1:36:-0.889005,0,-23.3762 dDocent_Contig_4835 11 . A G 25588 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=35;CIGAR=1X1M2X;DP=807;DPB=807;DPRA=0;EPP=79.0118;EPPR=42.0968;GTI=0;LEN=1;MEANALT=2.5;MQM=50.6;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1371;QR=696;RO=18;RPL=0;RPP=79.0118;RPPR=42.0968;RPR=35;RUN=1;SAF=35;SAP=79.0118;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:347:8,322,17:8:308:322,17:12587,660:-1099.19,-71.6435,0,-1048.14,-43.4701,-1068.31 1|1:184:7,165,10:7:274:165,10:6370,392:-544.142,-27.1354,0,-514.889,-18.3101,-534.409 1|1:174:2,171,1:2:74:171,1:6646,40:-589.717,-45.4423,0,-587.032,-48.1797,-592.784 1|1:102:1,94,7:1:40:94,7:3657,279:-325.145,-25.0011,0,-302.724,-5.57994,-303.912 dDocent_Contig_4837 11 . T G 83.9438 . AB=0.75;ABP=5.18177;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=28;DPB=28;DPRA=0.5;EPP=9.52472;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=121;QR=1015;RO=25;RPL=0;RPP=9.52472;RPPR=57.2971;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:12:12,0:12:485:0:0:0,-3.61236,-44.0014 0/0:4:4,0:4:164:0:0:0,-1.20412,-15.1499 0/0:8:8,0:8:326:0:0:0,-2.40824,-29.7099 0/1:4:1,3:1:40:3:121:-10.0761,0,-2.79156 dDocent_Contig_4838 13 . A G 7640.89 . AB=0.0425532;ABP=771.85;AC=0;AF=0;AN=8;AO=18;CIGAR=1X3M2X;DP=702;DPB=702.833;DPRA=0;EPP=42.0968;EPPR=806.455;GTI=0;LEN=1;MEANALT=6.5;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.944444;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=685;QR=14472;RO=370;RPL=0;RPP=42.0968;RPPR=806.455;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=370;SRP=806.455;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:270:169,5,90:169:6626:5,90:191,3572:-234.707,-269.912,-813.286,0,-529.205,-517.782 0|0:204:100,0,93:100:3881:0,93:0,3689:-266.576,-296.679,-615.529,0,-318.848,-290.852 0|0:153:58,13,68:58:2285:13,68:494,2717:-201.065,-178.015,-362.087,0,-147.479,-167.518 0|0:75:43,0,26:43:1680:0,26:0,1028:-69.1393,-82.0836,-220.202,0,-138.153,-130.326 dDocent_Contig_4840 12 . C A 7314.03 . AB=0.774336;ABP=150.747;AC=5;AF=0.625;AN=8;AO=227;CIGAR=1X;DP=280;DPB=280;DPRA=0;EPP=495.935;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=59.7445;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.962264;PAO=0;PQA=0;PQR=0;PRO=0;QA=9013;QR=2094;RO=53;RPL=0;RPP=495.935;RPPR=118.098;RPR=227;RUN=1;SAF=227;SAP=495.935;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:54:2,52:2:73:52:2059:-178.565,-9.32643,0 0/1:111:16,95:16:625:95:3746:-303.678,0,-23.1653 0/1:53:19,34:19:758:34:1362:-106.877,0,-52.5856 0/1:62:16,46:16:638:46:1846:-147.68,0,-39.0885 dDocent_Contig_4841 31 . G A 72.9608 . AB=0.134615;ABP=63.3104;AC=2;AF=0.25;AN=8;AO=9;CIGAR=1X;DP=94;DPB=94;DPRA=0;EPP=22.5536;EPPR=187.585;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.3294;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.941176;PAO=0;PQA=0;PQR=0;PRO=0;QA=360;QR=3410;RO=85;RPL=0;RPP=22.5536;RPPR=187.585;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=85;SRP=187.585;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:37:32,5:32:1272:5:202:-7.42376,0,-103.611 0/0:26:25,1:25:1002:1:36:0,-4.2285,-86.5618 0/1:15:13,2:13:526:2:82:-3.26423,0,-43.1048 0/0:16:15,1:15:610:1:40:0,-0.820801,-51.2421 dDocent_Contig_4843 107 . N A 197.893 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=8;CIGAR=1X;DP=8;DPB=8;DPRA=0;EPP=20.3821;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=212;QR=0;RO=0;RPL=0;RPP=20.3821;RPPR=0;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:1:0,1:0:0:1:10:-0.999996,-0.30103,0 1/1:7:0,7:0:0:7:202:-18.4661,-2.10721,0 dDocent_Contig_4844 28 . A G 213.211 . AB=0.190476;ABP=55.4358;AC=2;AF=0.25;AN=8;AO=12;CIGAR=1X;DP=199;DPB=199;DPRA=0.463235;EPP=29.068;EPPR=409.076;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=479;QR=7522;RO=187;RPL=0;RPP=29.068;RPPR=409.076;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=187;SRP=409.076;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:95:95,0:95:3814:0:0:0,-28.5978,-343.239 0/1:44:34,10:34:1375:10:398:-22.9297,0,-110.759 0/1:19:17,2:17:674:2:81:-1.96616,0,-55.267 0/0:41:41,0:41:1659:0:0:0,-12.3422,-149.532 dDocent_Contig_4845 36 . A T 5489.27 . AB=0.666667;ABP=66.7068;AC=4;AF=0.5;AN=8;AO=176;CIGAR=1X;DP=264;DPB=264;DPRA=0;EPP=385.189;EPPR=194.1;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7055;QR=3523;RO=88;RPL=0;RPP=385.189;RPPR=194.1;RPR=176;RUN=1;SAF=176;SAP=385.189;SAR=0;SRF=88;SRP=194.1;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:90:32,58:32:1265:58:2346:-184.194,0,-87.0273 0/1:84:23,61:23:921:61:2412:-191.94,0,-57.9113 0/1:52:29,23:29:1175:23:937:-68.9769,0,-90.3722 0/1:38:4,34:4:162:34:1360:-111.211,0,-3.52782 dDocent_Contig_4846 64 . T C 8138.91 . AB=0.429878;ABP=31.0276;AC=4;AF=0.5;AN=8;AO=282;CIGAR=1X;DP=656;DPB=656;DPRA=0;EPP=615.366;EPPR=815.141;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=11315;QR=14298;RO=374;RPL=282;RPP=615.366;RPPR=815.141;RPR=0;RUN=1;SAF=282;SAP=615.366;SAR=0;SRF=374;SRP=815.141;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:178:108,70:108:4123:70:2808:-199.24,0,-317.572 0/1:250:150,100:150:5728:100:3996:-284.371,0,-440.232 0/1:150:85,65:85:3263:65:2622:-190.948,0,-248.653 0/1:78:31,47:31:1184:47:1889:-146.73,0,-83.376 dDocent_Contig_4847 177 . G A 65.7096 . AB=0.272727;ABP=7.94546;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=52;DPB=52;DPRA=1.36364;EPP=11.6962;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=162;QR=1911;RO=48;RPL=4;RPP=11.6962;RPPR=107.241;RPR=0;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=107.241;SRR=48;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:8,3:8:324:3:121:-7.96887,0,-26.2179 0/0:19:18,1:18:709:1:41:0,-1.625,-60.0428 0/0:15:15,0:15:598:0:0:0,-4.51545,-54.1585 0/0:7:7,0:7:280:0:0:0,-2.10721,-25.5707 dDocent_Contig_4848 203 . A T 49.328 . AB=0.25;ABP=9.52472;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=68;DPB=68;DPRA=0.642857;EPP=9.52472;EPPR=144.156;GTI=0;LEN=1;MEANALT=1;MQM=47;MQMR=46.3538;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=111;QR=2348;RO=65;RPL=3;RPP=9.52472;RPPR=144.156;RPR=0;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=144.156;SRR=65;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:29:29,0:29:1026:0:0:0,-8.72987,-88.5386 0/0:10:10,0:10:368:0:0:0,-3.0103,-33.1249 0/0:17:17,0:17:623:0:0:0,-5.11751,-55.8269 0/1:12:9,3:9:331:3:111:-6.63176,0,-26.2196 dDocent_Contig_4849 98 . N A 2587.46 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=83;CIGAR=1X;DP=83;DPB=83;DPRA=0;EPP=183.243;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=2854;QR=0;RO=0;RPL=83;RPP=183.243;RPPR=0;RPR=0;RUN=1;SAF=83;SAP=183.243;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:18:0,18:0:0:18:614:-55.5822,-5.41854,0 1/1:42:0,42:0:0:42:1448:-130.618,-12.6433,0 1/1:13:0,13:0:0:13:444:-40.2874,-3.91339,0 1/1:10:0,10:0:0:10:348:-31.656,-3.0103,0 dDocent_Contig_4850 1 . N G 74.9872 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=79;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:79:-7.49763,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_4851 25 . T A 7429.1 . AB=0.407738;ABP=52.6957;AC=4;AF=0.5;AN=8;AO=274;CIGAR=2X2M1X;DP=672;DPB=672;DPRA=0;EPP=597.994;EPPR=858.57;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=10576;QR=15691;RO=394;RPL=0;RPP=597.994;RPPR=858.57;RPR=274;RUN=1;SAF=274;SAP=597.994;SAR=0;SRF=394;SRP=858.57;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:151:86,64:86:3432:64:2435:-173.869,0,-263.47 0|1:239:134,104:134:5335:104:4033:-290.969,0,-407.967 0|1:153:89,62:89:3542:62:2388:-169.258,0,-272.978 0|1:129:85,44:85:3382:44:1720:-116.211,0,-265.615 dDocent_Contig_4852 52 . G T 106.128 . AB=0.184211;ABP=35.9253;AC=1;AF=0.125;AN=8;AO=7;CIGAR=2X;DP=258;DPB=258;DPRA=0.518182;EPP=18.2106;EPPR=543.707;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=260;QR=9708;RO=249;RPL=7;RPP=18.2106;RPPR=543.707;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=249;SRP=543.707;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:102:100,0:100:3885:0:0:0,-30.103,-349.423 0|0:93:93,0:93:3644:0:0:0,-27.9958,-328.012 0|1:38:31,7:31:1226:7:260:-12.3117,0,-99.1788 0|0:25:25,0:25:953:0:0:0,-7.52575,-86.0703 dDocent_Contig_4854 10 . A T 582.674 . AB=0.298913;ABP=67.6352;AC=2;AF=0.25;AN=8;AO=72;CIGAR=1X;DP=359;DPB=359;DPRA=0;EPP=159.356;EPPR=626.223;GTI=0;LEN=1;MEANALT=1;MQM=23.6667;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.993031;PAO=0;PQA=0;PQR=0;PRO=0;QA=2867;QR=11376;RO=287;RPL=0;RPP=159.356;RPPR=626.223;RPR=72;RUN=1;SAF=72;SAP=159.356;SAR=0;SRF=287;SRP=626.223;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:115:99,16:99:3873:16:639:0,-0.0113919,-313.978 0/1:125:79,46:79:3135:46:1856:-59.9544,0,-244.588 0/1:59:50,9:50:1998:9:332:-1.01101,0,-162.252 0/0:60:59,1:59:2370:1:40:0,-15.6725,-211.059 dDocent_Contig_4855 8 . T C 1547.03 . AB=0.0465116;ABP=233.439;AC=0;AF=0;AN=8;AO=6;CIGAR=1X3M1X;DP=184;DPB=184;DPRA=0;EPP=16.0391;EPPR=254.901;GTI=0;LEN=1;MEANALT=2.5;MQM=57.6667;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.666667;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=236;QR=4519;RO=116;RPL=0;RPP=16.0391;RPPR=254.901;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=116;SRP=254.901;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:69:37,5,27:37:1437:5,27:198,1053:-75.395,-70.2659,-186.834,0,-101.801,-109.94 0|0:60:48,1,10:48:1877:1,10:38,394:-17.9697,-29.3038,-183.322,0,-151.211,-151.317 0|0:41:24,0,17:24:927:0,17:0,656:-47.0172,-54.2419,-130.375,0,-76.5183,-71.4008 0|0:14:7,0,7:7:278:0,7:0,284:-21.7194,-23.8266,-46.7095,0,-23.2839,-21.1767 dDocent_Contig_4856 107 . N T 117.446 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=7.37776;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=127;QR=0;RO=0;RPL=0;RPP=11.6962;RPPR=0;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:4:0,4:0:0:4:127:-11.7444,-1.20412,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_4857 12 . C T 3324.45 . AB=0.692308;ABP=53.1212;AC=4;AF=0.5;AN=8;AO=108;CIGAR=1X;DP=156;DPB=156;DPRA=0;EPP=237.529;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=0.666667;PAO=0;PQA=0;PQR=0;PRO=0;QA=4285;QR=1864;RO=48;RPL=0;RPP=237.529;RPPR=107.241;RPR=108;RUN=1;SAF=108;SAP=237.529;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:50:20,30:20:786:30:1190:-92.3285,0,-56.0056 0/1:70:16,54:16:637:54:2140:-171.705,0,-36.5937 0/1:21:7,14:7:239:14:564:-44.781,0,-15.5108 0/1:15:5,10:5:202:10:391:-31.028,0,-14.046 dDocent_Contig_4858 39 . T C 436.105 . AB=0.153005;ABP=194.397;AC=1;AF=0.125;AN=8;AO=28;CIGAR=1X;DP=527;DPB=527;DPRA=1.59593;EPP=63.8115;EPPR=1086.58;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1109;QR=19927;RO=499;RPL=0;RPP=63.8115;RPPR=1086.58;RPR=28;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=499;SRP=1086.58;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:183:155,28:155:6207:28:1109:-45.0084,0,-503.297 0/0:188:188,0:188:7466:0:0:0,-56.5936,-671.575 0/0:88:88,0:88:3537:0:0:0,-26.4906,-318.36 0/0:68:68,0:68:2717:0:0:0,-20.47,-244.646 dDocent_Contig_4859 8 . A T 3393.94 . AB=0.686391;ABP=54.0078;AC=4;AF=0.5;AN=8;AO=116;CIGAR=1X;DP=169;DPB=169;DPRA=0;EPP=254.901;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=59.1034;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4435;QR=2004;RO=53;RPL=0;RPP=254.901;RPPR=118.098;RPR=116;RUN=1;SAF=116;SAP=254.901;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:43:15,28:15:565:28:1068:-82.2027,0,-38.246 0/1:39:15,24:15:574:24:921:-71.1523,0,-40.2621 0/1:50:15,35:15:560:35:1342:-104.911,0,-35.6862 0/1:37:8,29:8:305:29:1104:-88.526,0,-16.6722 dDocent_Contig_4860 98 . N C 1360.26 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=47;CIGAR=1X;DP=47;DPB=47;DPRA=0;EPP=105.07;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1491;QR=0;RO=0;RPL=47;RPP=105.07;RPPR=0;RPR=0;RUN=1;SAF=47;SAP=105.07;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:10:0,10:0:0:10:315:-28.6585,-3.0103,0 1/1:11:0,11:0:0:11:337:-30.6297,-3.31133,0 1/1:13:0,13:0:0:13:414:-37.5696,-3.91339,0 1/1:13:0,13:0:0:13:425:-38.5665,-3.91339,0 dDocent_Contig_4861 17 . C T 6870.43 . AB=0.75;ABP=98.5551;AC=6;AF=0.75;AN=8;AO=212;CIGAR=1X;DP=258;DPB=258;DPRA=0;EPP=463.362;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.995283;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=8329;QR=1830;RO=46;RPL=0;RPP=463.362;RPPR=102.898;RPR=212;RUN=1;SAF=212;SAP=463.362;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:65:25,40:25:996:40:1571:-122.058,0,-70.3673 0/1:111:19,92:19:761:92:3644:-294.575,0,-35.3964 1/1:38:2,36:2:73:36:1424:-121.484,-4.50995,0 1/1:44:0,44:0:0:44:1690:-152.324,-13.2453,0 dDocent_Contig_4862 16 . A C 675.409 . AB=0.0492308;ABP=576.606;AC=0;AF=0;AN=8;AO=21;CIGAR=1X2M1X1M1X;DP=460;DPB=460;DPRA=0;EPP=48.6112;EPPR=706.8;GTI=0;LEN=1;MEANALT=6.33333;MQM=60;MQMR=60;NS=4;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=0.979167;PAO=0;PQA=0;PQR=0;PRO=0;QA=837;QR=13306;RO=336;RPL=0;RPP=48.6112;RPPR=732.625;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=333;SRP=706.8;SRR=3;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:182:131,7,10,8,19:131:5209:7,10,8,19:280,400,292,752:-22.4562,-38.8258,-465.596,-28.9395,-434.753,-454.807,-38.046,-443.854,-433.968,-464.51,0,-405.813,-395.928,-405.029,-423.158 0|0:143:106,3,6,3,21:106:4173:3,6,3,21:120,238,115,842:-37.4639,-59.4878,-401.851,-49.7822,-383.162,-391.242,-59.9366,-393.316,-383.61,-402.298,0,-333.382,-323.675,-333.829,-336.945 0|0:84:65,2,5,5,2:65:2576:2,5,5,2:82,199,196,81:0,-12.7974,-224.22,-3.1807,-208.436,-213.699,-3.45097,-208.705,-199.087,-213.968,-12.887,-218.143,-208.525,-208.794,-224.309 0|0:51:34,3,0,3,7:34:1348:3,0,3,7:117,0,116,282:-13.0188,-13.6357,-123.695,-23.2538,-124.598,-134.215,-13.7257,-115.07,-124.688,-123.785,0,-101.354,-110.971,-101.443,-108.864 dDocent_Contig_4863 145 . C G 2287.68 . AB=0.620968;ABP=18.771;AC=4;AF=0.5;AN=8;AO=77;CIGAR=2X;DP=124;DPB=124;DPRA=0;EPP=170.214;EPPR=102.898;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3026;QR=1826;RO=46;RPL=0;RPP=170.214;RPPR=102.898;RPR=77;RUN=1;SAF=0;SAP=170.214;SAR=77;SRF=0;SRP=102.898;SRR=46;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:26:13,13:13:515:13:490:-36.6129,0,-38.8667 0|1:26:12,14:12:470:14:557:-42.6436,0,-34.82 0|1:48:10,38:10:396:38:1527:-123.221,0,-21.5474 0|1:24:11,12:11:445:12:452:-33.6886,0,-33.0732 dDocent_Contig_4864 27 . T C 382.716 . AB=0.213483;ABP=66.471;AC=3;AF=0.375;AN=8;AO=19;CIGAR=1X;DP=103;DPB=103;DPRA=2.11905;EPP=44.2683;EPPR=168.456;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.2024;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.97619;PAO=0;PQA=0;PQR=0;PRO=0;QA=770;QR=3315;RO=84;RPL=0;RPP=44.2683;RPPR=176.831;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=83;SRP=176.831;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:46:32,14:32:1274:14:566:-37.4348,0,-101.084 0/1:29:26,3:26:1020:3:122:-2.64262,0,-83.3658 0/1:14:12,2:12:474:2:82:-3.56526,0,-38.7969 0/0:14:14,0:14:547:0:0:0,-4.21442,-47.1792 dDocent_Contig_4865 12 . G A 555.549 . AB=0.392857;ABP=8.59409;AC=3;AF=0.375;AN=8;AO=22;CIGAR=1X;DP=68;DPB=68;DPRA=1.55556;EPP=50.7827;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=56.7727;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.863636;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=858;QR=1843;RO=46;RPL=0;RPP=50.7827;RPPR=102.898;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:12:12,0:12:482:0:0:0,-3.61236,-43.7294 0/1:18:16,2:16:633:2:78:-1.98476,0,-51.8851 0/1:16:8,8:8:320:8:298:-21.7504,0,-24.3508 0/1:22:10,12:10:408:12:482:-37.1085,0,-30.4579 dDocent_Contig_4866 10 . A G 314.896 . AB=0.216216;ABP=54.7735;AC=2;AF=0.25;AN=8;AO=20;CIGAR=1X;DP=174;DPB=174;DPRA=1.0813;EPP=46.4397;EPPR=337.417;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=752;QR=6122;RO=154;RPL=0;RPP=46.4397;RPPR=337.417;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=154;SRP=337.417;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:59:55,4:55:2206:4:125:0,-6.20896,-187.152 0/0:41:41,0:41:1622:0:0:0,-12.3422,-146.214 0/1:44:32,12:32:1274:12:466:-29.0436,0,-101.683 0/1:30:26,4:26:1020:4:161:-5.844,0,-83.0633 dDocent_Contig_4867 84 . A G 1467.35 . AB=0.645833;ABP=20.744;AC=4;AF=0.5;AN=8;AO=62;CIGAR=1X;DP=96;DPB=96;DPRA=0;EPP=137.642;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2020;QR=1223;RO=34;RPL=62;RPP=137.642;RPPR=76.8404;RPR=0;RUN=1;SAF=62;SAP=137.642;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:6,23:6:211:23:781:-61.8756,0,-10.6031 0/1:17:3,14:3:111:14:444:-35.1474,0,-5.23641 0/1:18:6,12:6:217:12:373:-28.452,0,-14.4629 0/1:32:19,13:19:684:13:422:-28.6579,0,-52.255 dDocent_Contig_4868 118 . C T 1591.87 . AB=0.461538;ABP=3.17734;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X1M1X;DP=67;DPB=67;DPRA=0.619048;EPP=16.0391;EPPR=33.4109;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=231;QR=502;RO=14;RPL=0;RPP=16.0391;RPPR=33.4109;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=33.4109;SRR=14;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:18:6,0,12:6:228:0,12:0,456:-35.9592,-37.7654,-56.4622,0,-19.0765,-15.4641 0|0:21:0,0,21:0:0:0,21:0,827:-74.7386,-74.7386,-74.7386,-6.32163,-6.32163,0 1|0:13:1,6,6:1:40:6,6:231,194:-30.964,-12.2684,-13.7682,-15.6559,0,-17.1469 0|0:15:7,0,8:7:234:0,8:0,301:-22.923,-25.0302,-43.9517,0,-19.275,-16.8668 dDocent_Contig_4869 142 . A T 1688.34 . AB=0.136752;ABP=137.103;AC=1;AF=0.125;AN=8;AO=16;CIGAR=1M7I3M1X;DP=117;DPB=241.6;DPRA=0;EPP=37.7539;EPPR=63.8115;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=550;QR=995;RO=28;RPL=0;RPP=37.7539;RPPR=63.8115;RPR=16;RUN=1;SAF=0;SAP=37.7539;SAR=16;SRF=0;SRP=63.8115;SRR=28;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:23:3,3,16:3:107:3,16:96,489:-38.2787,-31.4445,-39.272,0,-1.01526,-3.92819 1|0:49:9,10,30:9:317:10,30:349,965:-77.6411,-51.956,-74.7613,-2.57576,0,-19.355 0|0:33:13,2,17:13:465:2,17:70,547:-40.24,-38.4537,-75.7899,0,-32.3023,-32.8819 0|0:12:3,1,8:3:106:1,8:35,260:-20.0604,-18.1129,-26.4525,0,-5.78848,-6.22714 dDocent_Contig_4870 129 . C T 2103.97 . AB=0.377049;ABP=11.0198;AC=6;AF=0.75;AN=8;AO=69;CIGAR=1X;DP=108;DPB=108;DPRA=0;EPP=152.842;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2607;QR=1486;RO=39;RPL=0;RPP=152.842;RPPR=87.6977;RPR=69;RUN=1;SAF=0;SAP=152.842;SAR=69;SRF=0;SRP=87.6977;SRR=39;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:29:0,29:0:0:29:1116:-100.743,-8.72987,0 0/1:27:13,14:13:495:14:517:-38.7373,0,-36.7678 0/1:34:25,9:25:953:9:350:-21.6263,0,-75.8438 1/1:18:1,17:1:38:17:624:-52.6879,-1.62127,0 dDocent_Contig_4871 18 . C T 2485.68 . AB=0.126761;ABP=88.9211;AC=0;AF=0;AN=8;AO=9;CIGAR=2X;DP=256;DPB=256;DPRA=0;EPP=22.5536;EPPR=341.76;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=342;QR=6230;RO=156;RPL=0;RPP=22.5536;RPPR=341.76;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=156;SRP=341.76;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:70:47,0,23:47:1864:0,23:0,931:-63.0205,-77.1689,-230.591,0,-153.824,-146.9 0|0:71:41,9,21:41:1655:9,21:342,845:-57.3128,-41.616,-175.338,0,-108.409,-130.128 0|0:67:39,0,28:39:1556:0,28:0,1124:-81.272,-93.0121,-221.153,0,-128.54,-120.112 0|0:48:29,0,19:29:1155:0,19:0,761:-54.3607,-63.0905,-158.191,0,-95.4996,-89.78 dDocent_Contig_4873 89 . A T 8989.09 . AB=0.513869;ABP=4.15468;AC=4;AF=0.5;AN=8;AO=352;CIGAR=1X;DP=685;DPB=685;DPRA=0;EPP=767.369;EPPR=726.111;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.993994;PAO=0;PQA=0;PQR=0;PRO=0;QA=12351;QR=11696;RO=333;RPL=352;RPP=767.369;RPPR=726.111;RPR=0;RUN=1;SAF=352;SAP=767.369;SAR=0;SRF=333;SRP=726.111;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:253:143,110:143:4995:110:3893:-274.409,0,-373.545 0/1:209:94,115:94:3331:115:4039:-300.787,0,-237.094 0/1:134:56,78:56:1985:78:2680:-201.106,0,-138.589 0/1:89:40,49:40:1385:49:1739:-130.004,0,-98.1522 dDocent_Contig_4874 98 . N G 64.5896 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=68;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:68:-6.45788,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_4875 18 . G A 39.8765 . AB=0.137931;ABP=36.0317;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=98;DPB=98;DPRA=1.26087;EPP=11.6962;EPPR=207.129;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=156;QR=3710;RO=94;RPL=0;RPP=11.6962;RPPR=207.129;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=94;SRP=207.129;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:24:24,0:24:941:0:0:0,-7.22472,-84.991 0/0:33:33,0:33:1302:0:0:0,-9.93399,-117.442 0/1:29:25,4:25:981:4:156:-5.68657,0,-79.8581 0/0:12:12,0:12:486:0:0:0,-3.61236,-44.0913 dDocent_Contig_4876 98 . N T 156.348 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=5;CIGAR=3X;DP=5;DPB=5;DPRA=0;EPP=13.8677;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=8.07091;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=170;QR=0;RO=0;RPL=5;RPP=13.8677;RPPR=0;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. 1|1:5:0,5:0:0:5:170:-15.6346,-1.50515,0 .:.:.:.:.:.:.:. dDocent_Contig_4877 153 . C T 49.3063 . AB=0.137931;ABP=36.0317;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=65;DPB=65;DPRA=2.41667;EPP=11.6962;EPPR=135.47;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=163;QR=2391;RO=61;RPL=0;RPP=11.6962;RPPR=135.47;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=135.47;SRR=61;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:25,4:25:969:4:163:-6.32856,0,-78.7784 0/0:19:19,0:19:752:0:0:0,-5.71957,-67.9995 0/0:7:7,0:7:279:0:0:0,-2.10721,-25.4806 0/0:10:10,0:10:391:0:0:0,-3.0103,-35.5439 dDocent_Contig_4878 88 . G A 189.039 . AB=0.216667;ABP=44.8473;AC=2;AF=0.25;AN=8;AO=15;CIGAR=1X;DP=149;DPB=149;DPRA=0.522989;EPP=35.5824;EPPR=293.988;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.985075;PAO=0;PQA=0;PQR=0;PRO=0;QA=509;QR=4377;RO=134;RPL=15;RPP=35.5824;RPPR=293.988;RPR=0;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=134;SRP=293.988;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:41:31,10:31:1032:10:336:-18.2243,0,-80.8436 0/0:58:58,0:58:1883:0:0:0,-17.4597,-169.746 0/1:19:16,3:16:525:3:105:-4.07659,0,-41.8435 0/0:31:29,2:29:937:2:68:0,-2.87405,-78.1722 dDocent_Contig_4879 22 . A G 3009.21 . AB=0.221014;ABP=376.189;AC=2;AF=0.25;AN=8;AO=122;CIGAR=14M1X4M;DP=552;DPB=555.053;DPRA=0;EPP=267.93;EPPR=789.083;GTI=0;LEN=1;MEANALT=3.25;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4874;QR=14224;RO=362;RPL=0;RPP=267.93;RPPR=789.083;RPR=122;RUN=1;SAF=122;SAP=267.93;SAR=0;SRF=362;SRP=789.083;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:154:100,25,21:100:3934:25,21:932,830:-46.1864,0,-316.086,-7.98264,-255.313,-325.284 0|1:177:118,10,48:118:4640:10,48:384,1931:-123.647,-127.649,-506.301,0,-350.175,-367.247 0|1:144:84,13,46:84:3311:13,46:478,1840:-126.29,-112.504,-380.992,0,-233.35,-258.579 0|0:77:60,10,7:60:2339:10,7:370,273:-12.1949,0,-189.242,-7.80958,-169.813,-197.971 dDocent_Contig_4880 30 . G A 1178.15 . AB=0.350746;ABP=28.9383;AC=3;AF=0.375;AN=8;AO=50;CIGAR=1X;DP=177;DPB=177;DPRA=0;EPP=111.584;EPPR=278.787;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1920;QR=5036;RO=127;RPL=0;RPP=111.584;RPPR=278.787;RPR=50;RUN=1;SAF=50;SAP=111.584;SAR=0;SRF=127;SRP=278.787;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:43:40,3:40:1584:3:114:0,-2.31358,-132.169 0/1:79:50,29:50:1997:29:1110:-76.4053,0,-156.146 0/1:32:18,14:18:709:14:532:-38.5814,0,-54.5022 0/1:23:19,4:19:746:4:164:-8.22621,0,-60.5373 dDocent_Contig_4881 8 . A G 8763.14 . AB=0.852632;ABP=105.618;AC=6;AF=0.75;AN=8;AO=275;CIGAR=1X;DP=301;DPB=301;DPRA=0;EPP=600.165;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.88;PAO=0;PQA=0;PQR=0;PRO=0;QA=10555;QR=963;RO=25;RPL=0;RPP=600.165;RPPR=57.2971;RPR=275;RUN=1;SAF=275;SAP=600.165;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:100:8,92:8:308:92:3542:-290.821,-2.02077,0 1/1:106:4,102:4:155:102:3939:-340.275,-17.5837,0 0/1:64:6,58:6:233:58:2200:-178.957,0,-2.07416 0/1:31:7,23:7:267:23:874:-69.5755,0,-14.9908 dDocent_Contig_4882 19 . T C 968.114 . AB=0.237838;ABP=113.45;AC=2;AF=0.25;AN=8;AO=48;CIGAR=1X;DP=384;DPB=384;DPRA=0.690667;EPP=107.241;EPPR=732.625;GTI=0;LEN=1;MEANALT=1;MQM=59.5833;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.979167;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1891;QR=13409;RO=336;RPL=0;RPP=107.241;RPPR=732.625;RPR=48;RUN=1;SAF=48;SAP=107.241;SAR=0;SRF=336;SRP=732.625;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:95:72,23:72:2887:23:923:-54.4596,0,-231.331 0/0:125:125,0:125:4989:0:0:0,-37.6287,-448.884 0/1:90:69,21:69:2747:21:806:-45.7498,0,-220.247 0/0:74:70,4:70:2786:4:162:0,-7.30926,-235.881 dDocent_Contig_4883 31 . A C 3319.06 . AB=0.584906;ABP=9.64763;AC=5;AF=0.625;AN=8;AO=105;CIGAR=1X;DP=150;DPB=150;DPRA=0;EPP=231.015;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4135;QR=1757;RO=45;RPL=0;RPP=231.015;RPPR=100.727;RPR=105;RUN=1;SAF=105;SAP=231.015;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:49:25,24:25:985:24:925:-68.8,0,-74.2047 1/1:44:1,43:1:41:43:1716:-150.57,-9.15075,0 0/1:33:9,24:9:346:24:947:-75.5919,0,-21.562 0/1:24:10,14:10:385:14:547:-42.3417,0,-27.7772 dDocent_Contig_4884 26 . G A 83.0287 . AB=0.108911;ABP=137.19;AC=1;AF=0.125;AN=8;AO=14;CIGAR=1X;DP=252;DPB=252;DPRA=2.31579;EPP=33.4109;EPPR=519.821;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=568;QR=9505;RO=238;RPL=0;RPP=33.4109;RPPR=519.821;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=238;SRP=519.821;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:75:72,3:72:2895:3:123:0,-11.1125,-249.184 0/1:101:90,11:90:3597:11:445:-10.0018,0,-293.346 0/0:51:51,0:51:2032:0:0:0,-15.3525,-183.067 0/0:25:25,0:25:981:0:0:0,-7.52575,-88.5896 dDocent_Contig_4886 17 . T G 3009.66 . AB=0.240214;ABP=332.456;AC=4;AF=0.5;AN=8;AO=135;CIGAR=1X;DP=562;DPB=562;DPRA=0;EPP=296.159;EPPR=925.886;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5292;QR=16678;RO=425;RPL=0;RPP=296.159;RPPR=925.886;RPR=135;RUN=1;SAF=135;SAP=296.159;SAR=0;SRF=425;SRP=925.886;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:145:114,31:114:4483:31:1229:-67.2386,0,-359.8 0/1:185:157,28:157:6144:28:1079:-41.7125,0,-497.102 0/1:133:84,47:84:3279:47:1860:-127.777,0,-255.366 0/1:99:70,29:70:2772:29:1124:-71.6361,0,-219.809 dDocent_Contig_4887 13 . A C 2306.85 . AB=0.470588;ABP=4.28764;AC=4;AF=0.5;AN=8;AO=80;CIGAR=1X;DP=170;DPB=170;DPRA=0;EPP=176.728;EPPR=198.443;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3200;QR=3595;RO=90;RPL=0;RPP=176.728;RPPR=198.443;RPR=80;RUN=1;SAF=80;SAP=176.728;SAR=0;SRF=90;SRP=198.443;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:81:42,39:42:1680:39:1553:-115.622,0,-127.044 0/1:59:37,22:37:1470:22:893:-62.913,0,-114.784 0/1:21:9,12:9:364:12:474:-36.6855,0,-26.8031 0/1:9:2,7:2:81:7:280:-22.8619,0,-4.97646 dDocent_Contig_4889 53 . T A 122.223 . AB=0.109589;ABP=196.301;AC=1;AF=0.125;AN=8;AO=19;CIGAR=1X;DP=437;DPB=437;DPRA=1.00459;EPP=44.2683;EPPR=910.686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=758;QR=16734;RO=418;RPL=19;RPP=44.2683;RPPR=910.686;RPR=0;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=418;SRP=910.686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:146:130,16:130:5214:16:636:-13.6203,0,-425.146 0/0:119:119,0:119:4755:0:0:0,-35.8226,-427.851 0/0:99:99,0:99:3952:0:0:0,-29.802,-355.659 0/0:73:70,3:70:2813:3:122:0,-10.6027,-241.89 dDocent_Contig_4890 153 . C T 201.383 . AB=0.229167;ABP=33.5919;AC=2;AF=0.25;AN=8;AO=14;CIGAR=1X;DP=99;DPB=99;DPRA=6.26667;EPP=33.4109;EPPR=187.585;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=516;QR=3031;RO=85;RPL=0;RPP=33.4109;RPPR=187.585;RPR=14;RUN=1;SAF=0;SAP=33.4109;SAR=14;SRF=0;SRP=187.585;SRR=85;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:20,6:20:734:6:225:-12.7832,0,-58.5629 0/0:46:43,3:43:1506:3:102:0,-4.33326,-126.302 0/1:22:17,5:17:606:5:189:-10.7529,0,-48.2457 0/0:5:5,0:5:185:0:0:0,-1.50515,-17.01 dDocent_Contig_4891 168 . A G 223.473 . AB=0.227273;ABP=31.4368;AC=1;AF=0.125;AN=8;AO=10;CIGAR=1X;DP=127;DPB=127;DPRA=1.59036;EPP=24.725;EPPR=257.073;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=407;QR=4617;RO=117;RPL=10;RPP=24.725;RPPR=257.073;RPR=0;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=257.073;SRR=117;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:44:34,10:34:1339:10:407:-23.7453,0,-107.528 0/0:22:22,0:22:849:0:0:0,-6.62266,-76.7077 0/0:44:44,0:44:1750:0:0:0,-13.2453,-157.721 0/0:17:17,0:17:679:0:0:0,-5.11751,-61.4402 dDocent_Contig_4892 29 . T C 2680.45 . AB=0.522989;ABP=3.809;AC=4;AF=0.5;AN=8;AO=91;CIGAR=1X;DP=174;DPB=174;DPRA=0;EPP=200.614;EPPR=183.243;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3629;QR=2582;RO=83;RPL=0;RPP=200.614;RPPR=183.243;RPR=91;RUN=1;SAF=91;SAP=200.614;SAR=0;SRF=83;SRP=183.243;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:52:43,9:43:1351:9:348:-16.0179,0,-106.218 0/1:37:9,28:9:286:28:1126:-90.4855,0,-14.9131 0/1:49:23,26:23:709:26:1049:-79.9511,0,-49.3506 0/1:36:8,28:8:236:28:1106:-88.9885,0,-10.6934 dDocent_Contig_4894 107 . N G 66.4848 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=70;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:70:-6.6474,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_4895 14 . T C 2299.51 . AB=0.342629;ABP=57.003;AC=4;AF=0.5;AN=8;AO=86;CIGAR=1X;DP=251;DPB=251;DPRA=0;EPP=189.757;EPPR=361.303;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3463;QR=6589;RO=165;RPL=0;RPP=189.757;RPPR=361.303;RPR=86;RUN=1;SAF=86;SAP=189.757;SAR=0;SRF=165;SRP=361.303;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:83:32,51:32:1287:51:2054:-160.056,0,-91.1112 0/1:98:84,14:84:3347:14:562:-21.4208,0,-271.775 0/1:49:35,14:35:1411:14:564:-36.3516,0,-112.491 0/1:21:14,7:14:544:7:283:-19.5209,0,-42.9737 dDocent_Contig_4897 46 . A T 8405.82 . AB=0.73494;ABP=122.389;AC=5;AF=0.625;AN=8;AO=263;CIGAR=2X;DP=334;DPB=334;DPRA=0;EPP=255.867;EPPR=157.185;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.992395;PAIREDR=0.859155;PAO=0;PQA=0;PQR=0;PRO=0;QA=10431;QR=2816;RO=71;RPL=44;RPP=255.867;RPPR=157.185;RPR=219;RUN=1;SAF=263;SAP=574.108;SAR=0;SRF=71;SRP=157.185;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:78:16,62:16:635:62:2455:-197.622,0,-34.0061 1|1:85:5,80:5:200:80:3179:-267.801,-7.20852,0 0|1:101:30,71:30:1184:71:2834:-224.769,0,-76.4332 0|1:70:20,50:20:797:50:1963:-155.788,0,-50.9762 dDocent_Contig_4898 33 . T C 72.6805 . AB=0.139535;ABP=51.5402;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=240;DPB=240;DPRA=1.3301;EPP=18.2106;EPPR=508.963;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.995708;PAO=0;PQA=0;PQR=0;PRO=0;QA=276;QR=8776;RO=233;RPL=0;RPP=18.2106;RPPR=508.963;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=233;SRP=508.963;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:43:37,6:37:1396:6:236:-8.66599,0,-112.97 0/0:94:93,1:93:3501:1:40:0,-24.3011,-311.213 0/0:73:73,0:73:2744:0:0:0,-21.9752,-247.144 0/0:30:30,0:30:1135:0:0:0,-9.0309,-102.445 dDocent_Contig_4899 81 . T C 427.899 . AB=0.289474;ABP=32.268;AC=2;AF=0.25;AN=8;AO=25;CIGAR=1X;DP=187;DPB=187;DPRA=0;EPP=57.2971;EPPR=354.789;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=865;QR=5593;RO=162;RPL=25;RPP=57.2971;RPPR=354.789;RPR=0;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=162;SRP=354.789;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:46:29,17:29:1009:17:587:-39.3086,0,-77.2758 0/0:79:78,1:78:2691:1:35:0,-20.2827,-238.944 0/0:32:30,2:30:1036:2:70:0,-2.98556,-86.9034 0/1:30:25,5:25:857:5:173:-6.87931,0,-68.4138 dDocent_Contig_4901 15 . T A 927.454 . AB=0.197628;ABP=203.927;AC=4;AF=0.5;AN=8;AO=50;CIGAR=1X;DP=253;DPB=253;DPRA=0;EPP=111.584;EPPR=443.819;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1944;QR=8119;RO=203;RPL=0;RPP=111.584;RPPR=443.819;RPR=50;RUN=1;SAF=50;SAP=111.584;SAR=0;SRF=203;SRP=443.819;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:57:48,9:48:1931:9:346:-14.3354,0,-156.825 0/1:59:44,15:44:1777:15:570:-33.8639,0,-142.381 0/1:84:64,20:64:2540:20:806:-47.5712,0,-203.447 0/1:53:47,6:47:1871:6:222:-4.37231,0,-152.64 dDocent_Contig_4902 7 . G A 4553.47 . AB=0.534884;ABP=6.19176;AC=4;AF=0.5;AN=8;AO=161;CIGAR=1X;DP=301;DPB=301;DPRA=0;EPP=352.617;EPPR=302.673;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6131;QR=4437;RO=138;RPL=0;RPP=352.617;RPPR=302.673;RPR=161;RUN=1;SAF=161;SAP=352.617;SAR=0;SRF=138;SRP=302.673;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:69:33,34:33:1063:34:1298:-96.8161,0,-75.6431 0/1:107:31,76:31:1048:76:2891:-228.156,0,-62.3928 0/1:95:59,36:59:1772:36:1363:-94.3521,0,-131.105 0/1:30:15,15:15:554:15:579:-43.4215,0,-41.1645 dDocent_Contig_4903 19 . C T 1747.2 . AB=0.0515464;ABP=172.452;AC=0;AF=0;AN=8;AO=5;CIGAR=2X7M;DP=132;DPB=131.222;DPRA=0;EPP=13.8677;EPPR=115.927;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=4;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=0.961538;PAO=0;PQA=0;PQR=0;PRO=0;QA=195;QR=2032;RO=52;RPL=0;RPP=13.8677;RPPR=115.927;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:52:15,5,4,2,25:15:593:5,4,2,25:204,160,81,996:-77.4945,-65.1774,-112.472,-68.8308,-100.798,-116.426,-75.3306,-107.298,-110.951,-123.528,0,-31.9629,-35.6169,-42.1167,-41.2705 0|0:45:24,0,0,3,17:24:931:0,0,3,17:0,0,114,685:-49.2755,-56.5002,-132.983,-56.5002,-132.983,-132.983,-47.1542,-123.636,-123.636,-122.733,0,-76.5162,-76.5162,-67.1684,-71.3987 0|0:23:9,1,3,0,10:9:353:1,3,0,10:31,121,0,408:-30.9734,-31.2011,-59.9239,-23.7075,-50.2503,-51.8312,-33.6827,-60.225,-52.7343,-62.7095,0,-26.5563,-19.0596,-29.0383,-26.028 0|0:12:4,0,0,0,8:4:155:0,0,0,8:0,0,0,307:-24.3741,-25.5782,-38.3124,-25.5782,-38.3124,-38.3124,-25.5782,-38.3124,-38.3124,-38.3124,0,-13.1201,-13.1201,-13.1201,-10.7119 dDocent_Contig_4904 135 . N G 118.899 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0.666667;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=120;QR=0;RO=0;RPL=3;RPP=9.52472;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:80:-7.59157,-0.60206,0 ./.:.:.:.:.:.:.:. 1/1:1:0,1:0:0:1:40:-3.99568,-0.30103,0 dDocent_Contig_4905 21 . T A 68.4143 . AB=0.75;ABP=5.18177;AC=3;AF=0.75;AN=4;AO=4;CIGAR=1X;DP=5;DPB=5;DPRA=0;EPP=5.18177;EPPR=5.18177;GTI=0;LEN=1;MEANALT=1;MQM=26.25;MQMR=44;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=140;QR=35;RO=1;RPL=0;RPP=11.6962;RPPR=5.18177;RPR=4;RUN=1;SAF=3;SAP=5.18177;SAR=1;SRF=1;SRP=5.18177;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:1:0,1:0:0:1:35:-2.27356,-0.30103,0 0/1:4:1,3:1:35:3:105:-6.0696,0,-2.2444 ./.:.:.:.:.:.:.:. dDocent_Contig_4906 11 . A G 31.774 . AB=0.119048;ABP=55.9529;AC=2;AF=0.25;AN=8;AO=5;CIGAR=1X;DP=93;DPB=93;DPRA=0.823529;EPP=13.8677;EPPR=194.1;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=197;QR=3495;RO=88;RPL=0;RPP=13.8677;RPPR=194.1;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=88;SRP=194.1;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:19,2:19:754:2:77:-0.98657,0,-61.857 0/0:38:38,0:38:1497:0:0:0,-11.4391,-134.973 0/1:21:18,3:18:731:3:120:-4.86568,0,-59.793 0/0:13:13,0:13:513:0:0:0,-3.91339,-46.5149 dDocent_Contig_4908 54 . C T 171.426 . AB=0.177419;ABP=59.0483;AC=2;AF=0.25;AN=8;AO=14;CIGAR=1X;DP=233;DPB=233;DPRA=0.406349;EPP=25.3454;EPPR=478.563;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.0714286;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=543;QR=8608;RO=219;RPL=14;RPP=33.4109;RPPR=478.563;RPR=0;RUN=1;SAF=13;SAP=25.3454;SAR=1;SRF=219;SRP=478.563;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:105:105,0:105:4125:0:0:0,-31.6081,-371.245 0/1:45:36,9:36:1416:9:346:-17.9439,0,-114.137 0/0:66:63,3:63:2475:3:116:0,-9.0512,-212.083 0/1:17:15,2:15:592:2:81:-2.56822,0,-48.4967 dDocent_Contig_4910 83 . A T 323.745 . AB=0.340426;ABP=13.4056;AC=1;AF=0.125;AN=8;AO=16;CIGAR=1X;DP=168;DPB=168;DPRA=1.16529;EPP=37.7539;EPPR=333.074;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.993421;PAO=0;PQA=0;PQR=0;PRO=0;QA=529;QR=5304;RO=152;RPL=16;RPP=37.7539;RPPR=333.074;RPR=0;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=152;SRP=333.074;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:47:31,16:31:1094:16:529:-33.7724,0,-84.6222 0/0:63:63,0:63:2217:0:0:0,-18.9649,-199.797 0/0:21:21,0:21:710:0:0:0,-6.32163,-64.2151 0/0:37:37,0:37:1283:0:0:0,-11.1381,-115.769 dDocent_Contig_4911 11 . C T 23895.7 . AB=0.329525;ABP=290.271;AC=6;AF=0.75;AN=8;AO=741;CIGAR=1M9I1M2X;DP=2108;DPB=3814.25;DPRA=0;EPP=1612.07;EPPR=155.013;GTI=0;LEN=1;MEANALT=6.5;MQM=59.9595;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=28595;QR=2584;RO=70;RPL=0;RPP=1612.07;RPPR=155.013;RPR=741;RUN=1;SAF=741;SAP=1612.07;SAR=0;SRF=70;SRP=155.013;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:569:15,255:15:542:255:9855:-837.423,-32.5275,0 0|1:568:25,172:25:910:172:6621:-536.073,0,-22.5449 0|1:570:30,203:30:1132:203:7860:-636.637,0,-31.666 1|1:401:0,111:0:0:111:4259:-382.832,-33.4143,0 dDocent_Contig_4912 8 . A G 4667.84 . AB=0.497006;ABP=3.03631;AC=4;AF=0.5;AN=8;AO=166;CIGAR=1X;DP=334;DPB=334;DPRA=0;EPP=363.475;EPPR=367.818;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.981928;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6374;QR=6435;RO=168;RPL=0;RPP=363.475;RPPR=367.818;RPR=166;RUN=1;SAF=166;SAP=363.475;SAR=0;SRF=168;SRP=367.818;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:99:49,50:49:1868:50:1919:-143.151,0,-138.567 0/1:89:37,52:37:1431:52:2011:-154.433,0,-102.277 0/1:86:41,45:41:1564:45:1718:-128.99,0,-115.144 0/1:60:41,19:41:1572:19:726:-47.6082,0,-123.685 dDocent_Contig_4913 21 . C T 330.88 . AB=0.219178;ABP=53.0137;AC=1;AF=0.125;AN=8;AO=17;CIGAR=1X;DP=365;DPB=365;DPRA=0.862245;EPP=39.9253;EPPR=758.683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=668;QR=13990;RO=348;RPL=0;RPP=39.9253;RPPR=758.683;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=348;SRP=758.683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:85:85,0:85:3433:0:0:0,-25.5875,-308.998 0/0:111:111,0:111:4449:0:0:0,-33.4143,-400.34 0/0:96:95,1:95:3837:1:41:0,-24.8043,-341.218 0/1:73:57,16:57:2271:16:627:-34.787,0,-182.575 dDocent_Contig_4914 31 . T A 12682.8 . AB=0.638604;ABP=84.2733;AC=4;AF=0.5;AN=8;AO=311;CIGAR=1X1M1X4M;DP=487;DPB=487;DPRA=0;EPP=678.338;EPPR=94.2121;GTI=0;LEN=1;MEANALT=2.25;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=5.55112e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=12216;QR=1632;RO=42;RPL=0;RPP=678.338;RPPR=94.2121;RPR=311;RUN=1;SAF=311;SAP=678.338;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:116:29,0,60,27:29:1132:0,60,27:0,2365,1078:-185.831,-194.56,-287.61,0,-93.0461,-74.9843,-105.775,-198.824,-4.2579,-190.697 1|0:118:2,0,90,26:2:79:0,90,26:0,3534,1052:-370.266,-370.868,-377.369,-80.2447,-86.745,-59.6523,-284.13,-290.631,0,-282.804 1|0:153:3,0,112,38:3:108:0,112,38:0,4369,1506:-473.371,-474.274,-483.083,-115.175,-123.982,-90.2668,-350.324,-359.133,0,-347.694 1|0:100:8,8,49,35:8:313:8,49,35:324,1948,1385:-246.211,-221.902,-245.229,-88.2396,-87.2562,-99.224,-134.644,-133.661,0,-149.843 dDocent_Contig_4915 13 . C T 32469.3 . AB=0.820849;ABP=1160.95;AC=4;AF=0.5;AN=8;AO=1063;CIGAR=1X;DP=1295;DPB=1295;DPRA=0;EPP=2311.29;EPPR=506.792;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.99569;PAO=0;PQA=0;PQR=0;PRO=0;QA=40507;QR=9130;RO=232;RPL=0;RPP=2311.29;RPPR=506.792;RPR=1063;RUN=1;SAF=1063;SAP=2311.29;SAR=0;SRF=232;SRP=506.792;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:469:84,385:84:3275:385:14626:-1174.47,0,-153.656 0/1:375:56,319:56:2233:319:12178:-982.608,0,-88.2644 0/1:261:53,208:53:2097:208:7936:-635.461,0,-110.365 0/1:190:39,151:39:1525:151:5767:-461.788,0,-80.3114 dDocent_Contig_4917 11 . G C 193.669 . AB=0.110132;ABP=302.702;AC=1;AF=0.125;AN=8;AO=59;CIGAR=1X;DP=1043;DPB=1043;DPRA=0;EPP=131.127;EPPR=2139.74;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.996951;PAO=0;PQA=0;PQR=0;PRO=0;QA=2345;QR=38425;RO=984;RPL=0;RPP=131.127;RPPR=2139.74;RPR=59;RUN=1;SAF=59;SAP=131.127;SAR=0;SRF=984;SRP=2139.74;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:350:346,4:346:13441:4:163:0,-90.3021,-1193.8 0/0:326:300,26:300:11770:26:1032:0,-4.96026,-965.432 0/1:227:202,25:202:7880:25:990:-21.0658,0,-640.546 0/0:140:136,4:136:5334:4:160:0,-27.3604,-465.172 dDocent_Contig_4918 1 . N G 74.9872 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=79;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:79:-7.49763,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_4919 15 . C G 8485.96 . AB=0.519071;ABP=4.91529;AC=4;AF=0.5;AN=8;AO=313;CIGAR=1X;DP=603;DPB=603;DPRA=0;EPP=682.681;EPPR=632.737;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=11519;QR=11068;RO=290;RPL=0;RPP=682.681;RPPR=632.737;RPR=313;RUN=1;SAF=313;SAP=682.681;SAR=0;SRF=290;SRP=632.737;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:220:104,116:104:3973:116:4295:-320.445,0,-291.432 0/1:183:70,113:70:2704:113:4159:-319.35,0,-188.447 0/1:113:76,37:76:2861:37:1333:-86.2396,0,-223.649 0/1:87:40,47:40:1530:47:1732:-129.96,0,-111.78 dDocent_Contig_4920 14 . T A 7757.41 . AB=0.465517;ABP=9.00057;AC=4;AF=0.5;AN=8;AO=270;CIGAR=1M1I2M1X1M1X;DP=580;DPB=625.167;DPRA=0;EPP=589.308;EPPR=671.824;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=10637;QR=12061;RO=308;RPL=0;RPP=589.308;RPPR=671.824;RPR=270;RUN=1;SAF=270;SAP=589.308;SAR=0;SRF=308;SRP=671.824;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:121:64,56:64:2501:56:2216:-163.105,0,-188.743 0|1:139:59,80:59:2310:80:3166:-243.198,0,-166.242 0|1:192:105,86:105:4139:86:3373:-245.765,0,-314.625 0|1:128:80,48:80:3111:48:1882:-131.071,0,-241.576 dDocent_Contig_4922 146 . G T 131.386 . AB=0.259259;ABP=16.6021;AC=1;AF=0.125;AN=8;AO=8;CIGAR=3X;DP=73;DPB=73;DPRA=1.60714;EPP=20.3821;EPPR=144.156;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.984615;PAO=0;PQA=0;PQR=0;PRO=0;QA=284;QR=2227;RO=65;RPL=0;RPP=20.3821;RPPR=144.156;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=144.156;SRR=65;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:27:20,7:20:701:7:248:-14.5365,0,-55.2818 0|0:17:17,0:17:584:0:0:0,-5.11751,-52.8787 0|0:18:17,1:17:603:1:36:0,-1.82026,-50.9983 0|0:11:11,0:11:339:0:0:0,-3.31133,-30.807 dDocent_Contig_4923 7 . A G 360.23 . AB=0.270833;ABP=46.8017;AC=2;AF=0.25;AN=8;AO=26;CIGAR=1X;DP=120;DPB=120;DPRA=4;EPP=59.4686;EPPR=207.129;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=0.653846;PAIREDR=0.978723;PAO=0;PQA=0;PQR=0;PRO=0;QA=753;QR=3581;RO=94;RPL=0;RPP=59.4686;RPPR=207.129;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=94;SRP=207.129;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:14:14,0:14:543:0:0:0,-4.21442,-49.2161 0/1:68:55,13:55:2070:13:393:-15.1854,0,-166.067 0/1:28:15,13:15:582:13:360:-24.2356,0,-44.2944 0/0:10:10,0:10:386:0:0:0,-3.0103,-35.0972 dDocent_Contig_4925 209 . N G 338.907 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=9;CIGAR=1X;DP=9;DPB=9;DPRA=0;EPP=22.5536;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=1.69407e-21;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=357;QR=0;RO=0;RPL=9;RPP=22.5536;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:118:-11.0025,-0.90309,0 1/1:4:0,4:0:0:4:158:-14.6,-1.20412,0 ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:81:-7.68573,-0.60206,0 dDocent_Contig_4926 7 . A G 517.133 . AB=0.271845;ABP=49.581;AC=3;AF=0.375;AN=8;AO=29;CIGAR=1X;DP=139;DPB=139;DPRA=0;EPP=65.983;EPPR=241.872;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.62069;PAIREDR=0.927273;PAO=0;PQA=0;PQR=0;PRO=0;QA=1000;QR=4179;RO=110;RPL=0;RPP=65.983;RPPR=241.872;RPR=29;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=110;SRP=241.872;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:34:24,10:24:909:10:337:-20.4155,0,-71.8905 0/1:24:18,6:18:682:6:225:-13.3852,0,-54.487 0/1:45:33,12:33:1262:12:406:-23.3106,0,-100.326 0/0:36:35,1:35:1326:1:32:0,-7.63777,-116.425 dDocent_Contig_4927 13 . C A 424.885 . AB=0.169014;ABP=138.131;AC=2;AF=0.25;AN=8;AO=34;CIGAR=1X;DP=286;DPB=286;DPRA=0;EPP=76.8404;EPPR=550.221;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.911765;PAIREDR=0.638889;PAO=0;PQA=0;PQR=0;PRO=0;QA=1364;QR=10049;RO=252;RPL=0;RPP=76.8404;RPPR=550.221;RPR=34;RUN=1;SAF=34;SAP=76.8404;SAR=0;SRF=252;SRP=550.221;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:74:65,9:65:2601:9:367:-11.119,0,-211.95 0/1:68:53,15:53:2125:15:610:-34.7674,0,-170.962 0/0:82:77,5:77:3070:5:204:0,-5.94043,-257.635 0/0:62:57,5:57:2253:5:183:0,-1.84586,-186.116 dDocent_Contig_4928 59 . C T 25290.1 . AB=0.0434109;ABP=1170.96;AC=1;AF=0.125;AN=8;AO=28;CIGAR=1X1M1X;DP=932;DPB=932;DPRA=0.749129;EPP=63.8115;EPPR=257.073;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1110;QR=4546;RO=117;RPL=28;RPP=63.8115;RPPR=257.073;RPR=0;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=117;SRP=257.073;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:287:19,0,267:19:744:0,267:0,10481:-875.394,-881.113,-942.288,-18.9138,-80.375,0 1|0:283:19,24,238:19:755:24,238:951,9369:-781.056,-708.497,-763.432,-16.1182,0,-6.63367 0|0:223:49,3,170:49:1880:3,170:119,6652:-532.12,-537.074,-690.463,0,-144.482,-103.103 0|0:139:30,1,108:30:1167:1,108:40,4309:-345.836,-351.572,-447.171,0,-92.5962,-63.3804 dDocent_Contig_4929 82 . T C 13764.7 . AB=0.90411;ABP=106.557;AC=7;AF=0.875;AN=8;AO=462;CIGAR=1X;DP=499;DPB=499;DPRA=0;EPP=1006.23;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=16609;QR=1319;RO=36;RPL=462;RPP=1006.23;RPPR=81.1833;RPR=0;RUN=1;SAF=462;SAP=1006.23;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:158:13,145:13:472:145:5201:-425.387,-4.74282,0 1/1:187:16,170:16:589:170:6156:-500.775,-2.72234,0 1/1:81:0,81:0:0:81:2902:-261.403,-24.3834,0 0/1:73:7,66:7:258:66:2350:-189.774,0,-1.5999 dDocent_Contig_4930 28 . T C 270.297 . AB=0.305556;ABP=14.8328;AC=2;AF=0.25;AN=8;AO=11;CIGAR=1X;DP=74;DPB=74;DPRA=0.947368;EPP=26.8965;EPPR=139.813;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=450;QR=2465;RO=63;RPL=0;RPP=26.8965;RPPR=139.813;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=63;SRP=139.813;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:12,7:12:461:7:286:-20.3952,0,-36.113 0/1:17:13,4:13:511:4:164:-10.0324,0,-41.2204 0/0:18:18,0:18:720:0:0:0,-5.41854,-65.1285 0/0:20:20,0:20:773:0:0:0,-6.0206,-69.891 dDocent_Contig_4931 42 . C G 3410.21 . AB=0.744966;ABP=80.6732;AC=4;AF=0.5;AN=8;AO=111;CIGAR=1X;DP=149;DPB=149;DPRA=0;EPP=244.044;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4357;QR=1522;RO=38;RPL=0;RPP=244.044;RPPR=85.5263;RPR=111;RUN=1;SAF=111;SAP=244.044;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:9,27:9:359:27:1061:-84.939,0,-21.835 0/1:28:7,21:7:284:21:790:-62.9751,0,-17.5049 0/1:47:18,29:18:720:29:1158:-90.3519,0,-50.9787 0/1:38:4,34:4:159:34:1348:-110.146,0,-3.2523 dDocent_Contig_4932 9 . T C 7657.01 . AB=0.713889;ABP=146.062;AC=4;AF=0.5;AN=8;AO=257;CIGAR=1X;DP=360;DPB=360;DPRA=0;EPP=561.079;EPPR=226.672;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=2.77556e-17;PAIRED=0.992218;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=9785;QR=3718;RO=103;RPL=0;RPP=561.079;RPPR=226.672;RPR=257;RUN=1;SAF=257;SAP=561.079;SAR=0;SRF=103;SRP=226.672;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:84:11,73:11:405:73:2766:-223.839,0,-11.5094 0/1:77:35,42:35:1258:42:1608:-121.807,0,-90.3306 0/1:118:21,97:21:747:97:3677:-295.52,0,-32.0299 0/1:81:36,45:36:1308:45:1734:-131.932,0,-93.6268 dDocent_Contig_4933 1 . N G 116.877 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=58.6667;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=118;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:80:-7.59179,-0.60206,0 1/1:1:0,1:0:0:1:38:-3.79317,-0.30103,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_4934 107 . N C 316.273 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=10;CIGAR=1X;DP=10;DPB=10;DPRA=0;EPP=24.725;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=330;QR=0;RO=0;RPL=0;RPP=24.725;RPPR=0;RPR=10;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1:0,1:0:0:1:35:-3.49863,-0.30103,0 1/1:3:0,3:0:0:3:101:-9.42377,-0.90309,0 1/1:3:0,3:0:0:3:101:-9.42377,-0.90309,0 1/1:3:0,3:0:0:3:93:-8.67808,-0.90309,0 dDocent_Contig_4935 48 . A G 223.445 . AB=0.193548;ABP=53.5846;AC=2;AF=0.25;AN=8;AO=15;CIGAR=1X;DP=146;DPB=146;DPRA=0.79845;EPP=35.5824;EPPR=287.473;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=0.6;PAIREDR=0.717557;PAO=0;PQA=0;PQR=0;PRO=0;QA=606;QR=5217;RO=131;RPL=0;RPP=35.5824;RPPR=287.473;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=131;SRP=287.473;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:41:38,3:38:1512:3:121:0,-1.06203,-125.044 0/1:22:18,4:18:712:4:163:-8.43577,0,-57.7826 0/1:40:32,8:32:1280:8:322:-17.3066,0,-103.428 0/0:43:43,0:43:1713:0:0:0,-12.9443,-154.396 dDocent_Contig_4936 8 . A G 16038.3 . AB=0.557905;ABP=31.9305;AC=4;AF=0.5;AN=8;AO=554;CIGAR=1X;DP=993;DPB=993;DPRA=0;EPP=1206.01;EPPR=956.287;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.99639;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=21224;QR=16698;RO=439;RPL=0;RPP=1206.01;RPPR=956.287;RPR=554;RUN=1;SAF=554;SAP=1206.01;SAR=0;SRF=439;SRP=956.287;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:308:157,151:157:5951:151:5779:-427.356,0,-442.835 0/1:275:121,154:121:4613:154:5899:-448.083,0,-332.435 0/1:244:92,152:92:3500:152:5777:-446.457,0,-241.677 0/1:166:69,97:69:2634:97:3769:-289.335,0,-187.284 dDocent_Contig_4937 19 . T A 111.154 . AB=0.238095;ABP=15.5221;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=77;DPB=77;DPRA=1.96154;EPP=16.0391;EPPR=157.185;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=0.985915;PAO=0;PQA=0;PQR=0;PRO=0;QA=246;QR=2827;RO=71;RPL=0;RPP=16.0391;RPPR=157.185;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=71;SRP=157.185;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:16,5:16:645:5:205:-12.5134,0,-52.0627 0/0:17:17,0:17:666:0:0:0,-5.11751,-60.2698 0/0:30:29,1:29:1153:1:41:0,-4.93633,-99.9534 0/0:9:9,0:9:363:0:0:0,-2.70927,-33.0341 dDocent_Contig_4938 26 . A G 1302.36 . AB=0.367647;ABP=23.7032;AC=4;AF=0.5;AN=8;AO=50;CIGAR=1X;DP=136;DPB=136;DPRA=0;EPP=111.584;EPPR=189.757;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1969;QR=3373;RO=86;RPL=0;RPP=111.584;RPPR=189.757;RPR=50;RUN=1;SAF=50;SAP=111.584;SAR=0;SRF=86;SRP=189.757;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:35:14,21:14:544:21:842:-65.5589,0,-38.7632 0/1:50:34,16:34:1345:16:634:-42.3442,0,-106.259 0/1:29:22,7:22:847:7:266:-15.5682,0,-67.8142 0/1:22:16,6:16:637:6:227:-14.1627,0,-51.0425 dDocent_Contig_4939 47 . A G 814.896 . AB=0.311927;ABP=36.4988;AC=2;AF=0.25;AN=8;AO=34;CIGAR=1X;DP=176;DPB=176;DPRA=1.62687;EPP=76.8404;EPPR=300.564;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=59.9504;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.957447;PAO=0;PQA=0;PQR=0;PRO=0;QA=1300;QR=5531;RO=141;RPL=0;RPP=76.8404;RPPR=300.564;RPR=34;RUN=1;SAF=34;SAP=76.8404;SAR=0;SRF=141;SRP=309.188;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:17,13:17:661:13:475:-34.043,0,-50.7878 0/1:79:57,21:57:2219:21:825:-50.8446,0,-176.157 0/0:43:43,0:43:1707:0:0:0,-12.9443,-153.854 0/0:24:24,0:24:944:0:0:0,-7.22472,-85.2621 dDocent_Contig_4942 67 . T A 11018.5 . AB=0.83105;ABP=419.953;AC=4;AF=0.5;AN=8;AO=364;CIGAR=1X;DP=438;DPB=438;DPRA=0;EPP=793.426;EPPR=159.356;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=13781;QR=2817;RO=72;RPL=364;RPP=793.426;RPPR=159.356;RPR=0;RUN=1;SAF=364;SAP=793.426;SAR=0;SRF=72;SRP=159.356;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:153:18,133:18:691:133:5001:-404.431,0,-16.8822 0/1:139:34,105:34:1357:105:4000:-318.208,0,-80.5461 0/1:87:13,74:13:499:74:2821:-227.853,0,-19.0604 0/1:59:7,52:7:270:52:1959:-158.759,0,-6.89875 dDocent_Contig_4943 12 . G C 8718.21 . AB=0.513181;ABP=3.86897;AC=4;AF=0.5;AN=8;AO=292;CIGAR=1X;DP=569;DPB=569;DPRA=0;EPP=637.08;EPPR=602.337;GTI=0;LEN=1;MEANALT=1.25;MQM=59.9315;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.992754;PAO=0;PQA=0;PQR=0;PRO=0;QA=11669;QR=10968;RO=276;RPL=0;RPP=637.08;RPPR=602.337;RPR=292;RUN=1;SAF=292;SAP=637.08;SAR=0;SRF=276;SRP=602.337;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:167:83,84:83:3297:84:3355:-251.728,0,-246.52 0/1:172:94,78:94:3743:78:3144:-231.25,0,-285.095 0/1:146:72,73:72:2850:73:2921:-218.978,0,-212.613 0/1:84:27,57:27:1078:57:2249:-177.263,0,-72.0231 dDocent_Contig_4944 150 . G A 76.805 . AB=0.227273;ABP=17.2236;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=75;DPB=75;DPRA=2.79167;EPP=20.3821;EPPR=148.499;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=275;QR=2439;RO=67;RPL=0;RPP=20.3821;RPPR=148.499;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=148.499;SRR=67;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:32:30,2:30:1144:2:70:0,-2.98556,-96.6014 0/1:22:17,5:17:569:5:174:-9.37929,0,-44.8897 0/0:13:12,1:12:441:1:31:0,-0.813936,-36.9248 0/0:8:8,0:8:285:0:0:0,-2.40824,-25.9908 dDocent_Contig_4945 14 . T G 159.84 . AB=0.269231;ABP=15.0369;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X;DP=65;DPB=65;DPRA=4;EPP=22.5536;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=357;QR=2174;RO=56;RPL=0;RPP=22.5536;RPPR=124.613;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:19,7:19:716:7:276:-17.3816,0,-56.9259 0/0:16:15,1:15:602:1:40:0,-0.820801,-50.523 0/0:18:17,1:17:674:1:41:0,-1.32397,-56.8962 0/0:5:5,0:5:182:0:0:0,-1.50515,-16.7309 dDocent_Contig_4946 11 . A G 1654.59 . AB=0.553398;ABP=5.56125;AC=4;AF=0.5;AN=8;AO=57;CIGAR=1X;DP=103;DPB=103;DPRA=0;EPP=126.784;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2250;QR=1806;RO=46;RPL=0;RPP=126.784;RPPR=102.898;RPR=57;RUN=1;SAF=57;SAP=126.784;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:34:13,21:13:505:21:817:-63.606,0,-35.5561 0/1:35:15,20:15:595:20:791:-60.9704,0,-43.354 0/1:23:14,9:14:544:9:362:-26.02,0,-42.3774 0/1:11:4,7:4:162:7:280:-22.2604,0,-11.6556 dDocent_Contig_4947 33 . C A 2606.19 . AB=0.529412;ABP=4.28764;AC=4;AF=0.5;AN=8;AO=90;CIGAR=1X;DP=170;DPB=170;DPRA=0;EPP=198.443;EPPR=176.728;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3533;QR=3183;RO=80;RPL=0;RPP=198.443;RPPR=176.728;RPR=90;RUN=1;SAF=90;SAP=198.443;SAR=0;SRF=80;SRP=176.728;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:46:34,12:34:1330:12:477:-29.4331,0,-106.116 0/1:58:16,42:16:651:42:1648:-131.087,0,-41.4628 0/1:27:8,19:8:323:19:761:-60.6816,0,-21.3108 0/1:39:22,17:22:879:17:647:-46.815,0,-67.6768 dDocent_Contig_4948 50 . G A 155.509 . AB=0.4;ABP=4.31318;AC=1;AF=0.25;AN=4;AO=6;CIGAR=1X;DP=27;DPB=27;DPRA=1.25;EPP=16.0391;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=241;QR=832;RO=21;RPL=6;RPP=16.0391;RPPR=48.6112;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:12:12,0:12:469:0:0:0,-3.61236,-42.558 0/1:15:9,6:9:363:6:241:-17.5509,0,-28.5183 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_4949 131 . G A 92.358 . AB=0.0571429;ABP=181.878;AC=0;AF=0;AN=8;AO=11;CIGAR=7M1X;DP=266;DPB=259.25;DPRA=0;EPP=26.8965;EPPR=511.135;GTI=0;LEN=1;MEANALT=3;MQM=58.1818;MQMR=60;NS=4;NUMALT=2;ODDS=1.38778e-17;PAIRED=0.818182;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=389;QR=8145;RO=234;RPL=0;RPP=26.8965;RPPR=511.135;RPR=11;RUN=1;SAF=0;SAP=26.8965;SAR=11;SRF=0;SRP=511.135;SRR=234;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:58:50,6,2:50:1758:6,2:215,72:-2.48279,0,-141.291,-11.6868,-137.249,-154.182 0|0:132:122,2,5:122:4249:2,5:70,175:0,-31.0179,-375.999,-22.4385,-362.363,-366.553 0|0:47:36,7,4:36:1234:7,4:256,142:-10.0899,0,-98.061,-9.3606,-88.5966,-108.316 0|0:29:26,3,0:26:904:3,0:109,0:-1.43813,0,-72.9455,-9.26491,-73.8486,-82.752 dDocent_Contig_4950 124 . C T 385.26 . AB=0.16763;ABP=169.009;AC=2;AF=0.25;AN=8;AO=32;CIGAR=1X;DP=289;DPB=289;DPRA=0.870833;EPP=72.4974;EPPR=561.079;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1145;QR=8705;RO=257;RPL=0;RPP=72.4974;RPPR=561.079;RPR=32;RUN=1;SAF=0;SAP=72.4974;SAR=32;SRF=0;SRP=561.079;SRR=257;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:80:80,0:80:2663:0:0:0,-24.0824,-239.917 0/1:110:93,17:93:3182:17:608:-21.9391,0,-253.505 0/1:63:51,12:51:1715:12:429:-19.9847,0,-135.668 0/0:36:33,3:33:1145:3:108:0,-0.76191,-93.2832 dDocent_Contig_4951 98 . N A 118.734 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=5;CIGAR=1X;DP=5;DPB=5;DPRA=0;EPP=13.8677;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=1.69407e-21;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=120;QR=0;RO=0;RPL=5;RPP=13.8677;RPPR=0;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1:0,1:0:0:1:7:-0.699998,-0.30103,0 1/1:3:0,3:0:0:3:95:-8.86469,-0.90309,0 ./.:.:.:.:.:.:.:. 1/1:1:0,1:0:0:1:18:-1.79997,-0.30103,0 dDocent_Contig_4953 123 . A G 402.017 . AB=0.166667;ABP=188.309;AC=1;AF=0.125;AN=8;AO=42;CIGAR=1X;DP=554;DPB=554;DPRA=0;EPP=94.2121;EPPR=1114.8;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1447;QR=17872;RO=512;RPL=0;RPP=94.2121;RPPR=1114.8;RPR=42;RUN=1;SAF=0;SAP=94.2121;SAR=42;SRF=0;SRP=1114.8;SRR=512;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:192:160,32:160:5535:32:1101:-41.5997,0,-440.488 0/0:141:137,4:137:4783:4:136:0,-29.8695,-418.059 0/0:100:98,2:98:3409:2:70:0,-23.4556,-300.379 0/0:121:117,4:117:4145:4:140:0,-23.4797,-360.292 dDocent_Contig_4954 7 . A G 608.834 . AB=0.183673;ABP=173.36;AC=3;AF=0.375;AN=8;AO=36;CIGAR=1X2M1X;DP=220;DPB=220;DPRA=2.72222;EPP=81.1833;EPPR=400.39;GTI=0;LEN=1;MEANALT=1.33333;MQM=58.8056;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1381;QR=6982;RO=183;RPL=0;RPP=81.1833;RPPR=400.39;RPR=36;RUN=1;SAF=36;SAP=81.1833;SAR=0;SRF=183;SRP=400.39;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:80:70,10:70:2681:10:389:-11.2755,0,-217.401 0|1:56:45,11:45:1724:11:428:-22.0071,0,-138.561 0|1:60:44,15:44:1672:15:564:-32.9987,0,-132.679 0|0:24:24,0:24:905:0:0:0,-7.22472,-81.7648 dDocent_Contig_4955 20 . A T 348.403 . AB=0.15894;ABP=155.574;AC=4;AF=0.5;AN=8;AO=24;CIGAR=1X;DP=151;DPB=151;DPRA=0;EPP=55.1256;EPPR=278.787;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=952;QR=5039;RO=127;RPL=0;RPP=55.1256;RPPR=278.787;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=127;SRP=278.787;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:45:41,4:41:1615:4:163:-1.51208,0,-132.041 0/1:35:25,10:25:1010:10:400:-25.8238,0,-80.6593 0/1:43:38,5:38:1492:5:196:-5.06876,0,-121.583 0/1:28:23,5:23:922:5:193:-9.31157,0,-74.8569 dDocent_Contig_4956 121 . A T 5147.72 . AB=0.524675;ABP=5.04641;AC=4;AF=0.5;AN=8;AO=202;CIGAR=1X;DP=385;DPB=385;DPRA=0;EPP=441.648;EPPR=398.218;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7075;QR=6482;RO=182;RPL=0;RPP=441.648;RPPR=398.218;RPR=202;RUN=1;SAF=0;SAP=441.648;SAR=202;SRF=0;SRP=398.218;SRR=182;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:138:57,81:57:2009:81:2809:-211.494,0,-139.526 0/1:94:52,41:52:1821:41:1480:-105.42,0,-136.087 0/1:93:46,47:46:1677:47:1631:-119.071,0,-123.215 0/1:60:27,33:27:975:33:1155:-86.185,0,-70.002 dDocent_Contig_4957 90 . G A 128.333 . AB=0.232558;ABP=29.7245;AC=2;AF=0.25;AN=8;AO=10;CIGAR=1X;DP=83;DPB=83;DPRA=1.075;EPP=24.725;EPPR=161.528;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=319;QR=2470;RO=73;RPL=10;RPP=24.725;RPPR=161.528;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=73;SRP=161.528;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:28:28,0:28:962:0:0:0,-8.42884,-86.8922 0/1:26:23,3:23:786:3:105:-1.96938,0,-63.2295 0/1:17:10,7:10:322:7:214:-14.4413,0,-24.1733 0/0:12:12,0:12:400:0:0:0,-3.61236,-36.3214 dDocent_Contig_4958 131 . T A 7317.23 . AB=0.789773;ABP=131.374;AC=6;AF=0.75;AN=8;AO=253;CIGAR=1X;DP=296;DPB=296;DPRA=0;EPP=552.393;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=8954;QR=1467;RO=43;RPL=0;RPP=552.393;RPPR=96.3836;RPR=253;RUN=1;SAF=0;SAP=552.393;SAR=253;SRF=0;SRP=96.3836;SRR=43;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:106:18,88:18:626:88:3143:-251.179,0,-24.754 0/1:70:19,51:19:636:51:1800:-141.202,0,-36.4802 1/1:87:6,81:6:205:81:2864:-239.212,-7.405,0 1/1:33:0,33:0:0:33:1147:-103.528,-9.93399,0 dDocent_Contig_4959 11 . C T 1114.41 . AB=0.272222;ABP=84.1269;AC=4;AF=0.5;AN=8;AO=49;CIGAR=1X;DP=180;DPB=180;DPRA=0;EPP=109.412;EPPR=287.473;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.992366;PAO=0;PQA=0;PQR=0;PRO=0;QA=1907;QR=5195;RO=131;RPL=0;RPP=109.412;RPPR=287.473;RPR=49;RUN=1;SAF=49;SAP=109.412;SAR=0;SRF=131;SRP=287.473;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:119:86,33:86:3392:33:1282:-79.8333,0,-269.524 0/1:25:20,5:20:805:5:198:-10.6716,0,-65.2424 0/1:22:16,6:16:636:6:231:-14.5334,0,-50.9547 0/1:14:9,5:9:362:5:196:-13.8008,0,-28.7299 dDocent_Contig_4960 9 . G T 17857.7 . AB=0.815029;ABP=152.139;AC=7;AF=0.875;AN=8;AO=562;CIGAR=1X;DP=604;DPB=604;DPRA=0;EPP=1223.38;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.998221;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=20826;QR=1580;RO=42;RPL=0;RPP=1223.38;RPPR=94.2121;RPR=562;RUN=1;SAF=562;SAP=1223.38;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:173:32,141:32:1192:141:5216:-417.401,0,-55.4981 1/1:150:10,140:10:388:140:5182:-431.153,-9.87648,0 1/1:183:0,183:0:0:183:6784:-610.509,-55.0885,0 1/1:98:0,98:0:0:98:3644:-328.107,-29.5009,0 dDocent_Contig_4961 12 . A G 266.603 . AB=0.236364;ABP=36.2141;AC=1;AF=0.125;AN=8;AO=20;CIGAR=1X1M1X1M1X;DP=168;DPB=168;DPRA=0;EPP=46.4397;EPPR=322.217;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.972789;PAO=0;PQA=0;PQR=0;PRO=0;QA=738;QR=5705;RO=147;RPL=0;RPP=46.4397;RPPR=322.217;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=147;SRP=322.217;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:55:41,13:41:1619:13:493:-28.0582,0,-129.3 0|0:42:39,3:39:1509:3:114:0,-2.01104,-125.438 0|0:45:43,2:43:1653:2:75:0,-6.42601,-141.897 0|0:26:24,2:24:924:2:56:0,-2.50731,-78.1527 dDocent_Contig_4962 8 . G A 230.446 . AB=0.102362;ABP=700.686;AC=3;AF=0.375;AN=8;AO=73;CIGAR=1X;DP=762;DPB=762;DPRA=0;EPP=161.528;EPPR=1481.83;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=5.55112e-17;PAIRED=1;PAIREDR=0.992743;PAO=0;PQA=0;PQR=0;PRO=0;QA=2810;QR=26316;RO=689;RPL=0;RPP=161.528;RPPR=1499.15;RPR=73;RUN=1;SAF=73;SAP=161.528;SAR=0;SRF=687;SRP=1481.83;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:254:233,21:233:8919:21:806:0,-3.59629,-729.578 0/1:239:214,25:214:8228:25:968:-15.4877,0,-668.353 0/1:146:131,15:131:4921:15:578:-8.41231,0,-398.977 0/1:123:111,12:111:4248:12:458:-4.54218,0,-345.361 dDocent_Contig_4964 38 . T A 30.7478 . AB=0.142857;ABP=26.2761;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=84;DPB=84;DPRA=1;EPP=9.52472;EPPR=178.9;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=119;QR=3222;RO=81;RPL=0;RPP=9.52472;RPPR=178.9;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=81;SRP=178.9;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:30:30,0:30:1198:0:0:0,-9.0309,-108.092 0/1:21:18,3:18:715:3:119:-4.77338,0,-58.3473 0/0:19:19,0:19:749:0:0:0,-5.71957,-67.7311 0/0:14:14,0:14:560:0:0:0,-4.21442,-50.7433 dDocent_Contig_4965 45 . T A 1247.69 . AB=0.415929;ABP=9.94748;AC=4;AF=0.5;AN=8;AO=47;CIGAR=1X;DP=113;DPB=113;DPRA=0;EPP=105.07;EPPR=146.327;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.914894;PAIREDR=0.893939;PAO=0;PQA=0;PQR=0;PRO=0;QA=1831;QR=2625;RO=66;RPL=0;RPP=105.07;RPPR=146.327;RPR=47;RUN=1;SAF=47;SAP=105.07;SAR=0;SRF=66;SRP=146.327;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:14,12:14:551:12:465:-34.3642,0,-42.1028 0/1:46:31,15:31:1228:15:593:-39.8582,0,-96.9409 0/1:29:14,15:14:560:15:572:-43.086,0,-42.0119 0/1:12:7,5:7:286:5:201:-14.8582,0,-22.5025 dDocent_Contig_4966 25 . G T 3053.88 . AB=0.502439;ABP=3.02089;AC=4;AF=0.5;AN=8;AO=103;CIGAR=1X3M;DP=205;DPB=205;DPRA=0;EPP=226.672;EPPR=183.243;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=59.988;NS=4;NUMALT=2;ODDS=2.77556e-17;PAIRED=1;PAIREDR=0.987952;PAO=0;PQA=0;PQR=0;PRO=0;QA=4102;QR=3288;RO=83;RPL=0;RPP=226.672;RPPR=183.243;RPR=103;RUN=1;SAF=103;SAP=226.672;SAR=0;SRF=83;SRP=183.243;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:79:17,16,46:17:677:16,46:638,1836:-146.084,-98.663,-149.593,0,-3.20721,-41.8991 0|1:41:21,1,19:21:845:1,19:41,743:-54.7334,-57.67,-127.016,0,-66.2493,-63.9142 0|1:57:33,0,23:33:1304:0,23:0,916:-65.4788,-75.4128,-182.715,0,-107.29,-100.366 0|1:28:12,0,15:12:462:0,15:0,607:-46.4892,-50.1016,-88.0224,0,-37.9616,-33.4461 dDocent_Contig_4967 72 . T C 271.761 . AB=0.223881;ABP=47.3796;AC=1;AF=0.125;AN=8;AO=16;CIGAR=1X;DP=237;DPB=237;DPRA=0.991597;EPP=37.7539;EPPR=480.734;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=575;QR=8357;RO=220;RPL=16;RPP=37.7539;RPPR=480.734;RPR=0;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=220;SRP=480.734;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:67:52,15:52:1907:15:538:-28.574,0,-151.68 0/0:87:87,0:87:3329:0:0:0,-26.1896,-299.725 0/0:51:50,1:50:1938:1:37:0,-11.6547,-170.943 0/0:32:31,0:31:1183:0:0:0,-9.33193,-106.669 dDocent_Contig_4968 9 . C T 2351.72 . AB=0.242826;ABP=263.247;AC=4;AF=0.5;AN=8;AO=110;CIGAR=1X;DP=453;DPB=453;DPRA=0;EPP=241.872;EPPR=745.654;GTI=0;LEN=1;MEANALT=1.25;MQM=59.9455;MQMR=60;NS=4;NUMALT=1;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4197;QR=13087;RO=342;RPL=0;RPP=241.872;RPPR=745.654;RPR=110;RUN=1;SAF=110;SAP=241.872;SAR=0;SRF=342;SRP=745.654;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:145:114,30:114:4364:30:1141:-59.3181,0,-349.15 0/1:72:57,15:57:2211:15:573:-30.2372,0,-177.535 0/1:114:81,33:81:3091:33:1265:-79.8246,0,-244.031 0/1:122:90,32:90:3421:32:1218:-73.1898,0,-271.293 dDocent_Contig_4969 22 . T G 217.425 . AB=0.176471;ABP=64.8334;AC=1;AF=0.125;AN=8;AO=19;CIGAR=1X;DP=239;DPB=239;DPRA=0;EPP=44.2683;EPPR=480.734;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.894737;PAIREDR=0.995455;PAO=0;PQA=0;PQR=0;PRO=0;QA=768;QR=8796;RO=220;RPL=0;RPP=44.2683;RPPR=480.734;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=220;SRP=480.734;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:60:58,2:58:2323:2:82:0,-10.2821,-201.446 0/0:60:59,1:59:2348:1:41:0,-13.9672,-207.376 0/0:51:47,4:47:1880:4:161:0,-0.477255,-154.523 0/1:68:56,12:56:2245:12:484:-23.4411,0,-181.744 dDocent_Contig_4970 1 . N G 101.016 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=52;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=104;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:1:0,1:0:0:1:35:-3.24616,-0.30103,0 1/1:2:0,2:0:0:2:69:-6.55266,-0.60206,0 dDocent_Contig_4971 90 . C T 59.701 . AB=0.104839;ABP=171.194;AC=2;AF=0.25;AN=8;AO=16;CIGAR=1X;DP=206;DPB=206;DPRA=1.95556;EPP=37.7539;EPPR=415.59;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=613;QR=6453;RO=190;RPL=16;RPP=37.7539;RPPR=415.59;RPR=0;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=190;SRP=415.59;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:81:74,7:74:2487:7:271:-0.372882,0,-199.7 0/1:43:37,6:37:1248:6:225:-7.66652,0,-99.6729 0/0:52:49,3:49:1686:3:117:0,-4.74318,-141.116 0/0:30:30,0:30:1032:0:0:0,-9.0309,-93.19 dDocent_Contig_4972 11 . G A 328.839 . AB=0.202381;ABP=67.6375;AC=2;AF=0.25;AN=8;AO=22;CIGAR=1X;DP=167;DPB=167;DPRA=0;EPP=50.7827;EPPR=317.874;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=0.986207;PAO=0;PQA=0;PQR=0;PRO=0;QA=870;QR=5687;RO=145;RPL=0;RPP=50.7827;RPPR=317.874;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=145;SRP=317.874;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:24,6:24:944:6:238:-12.7621,0,-76.2318 0/0:40:38,2:38:1467:2:81:0,-4.35547,-124.592 0/1:54:43,11:43:1707:11:438:-23.5197,0,-137.596 0/0:43:40,3:40:1569:3:113:0,-2.40548,-130.913 dDocent_Contig_4974 53 . G A 356.722 . AB=0.215909;ABP=64.6999;AC=2;AF=0.25;AN=8;AO=19;CIGAR=1X;DP=289;DPB=289;DPRA=0.437811;EPP=44.2683;EPPR=357.684;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=721;QR=10582;RO=270;RPL=19;RPP=44.2683;RPPR=357.684;RPR=0;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=270;SRP=589.308;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:111:111,0:111:4365:0:0:0,-33.4143,-392.805 0/0:90:90,0:90:3544:0:0:0,-27.0927,-319.017 0/1:46:40,6:40:1560:6:204:-4.83703,0,-126.795 0/1:42:29,13:29:1113:13:517:-34.2329,0,-87.8042 dDocent_Contig_4975 35 . G C 6471.37 . AB=0.310345;ABP=157.035;AC=2;AF=0.25;AN=8;AO=153;CIGAR=1X2M2X;DP=493;DPB=493;DPRA=0;EPP=335.246;EPPR=257.073;GTI=0;LEN=1;MEANALT=3.5;MQM=60;MQMR=60;NS=4;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5921;QR=4606;RO=117;RPL=0;RPP=335.246;RPPR=257.073;RPR=153;RUN=1;SAF=153;SAP=335.246;SAR=0;SRF=117;SRP=257.073;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:174:0,26,85,22,39:0:0:26,85,22,39:982,3302,880,1446:-389.623,-309.138,-301.311,-118.297,-37.8118,-92.7095,-317.134,-236.649,-45.8041,-310.511,-271.322,-190.838,0,-198.833,-259.582 0|1:165:78,0,36,16,35:78:3087:0,36,16,35:0,1386,634,1322:-90.3135,-113.794,-367.854,0,-254.062,-243.225,-61.6104,-315.672,-201.88,-310.856,-5.44598,-259.505,-145.715,-207.324,-248.969 0|0:88:24,0,21,8,35:24:939:0,21,8,35:0,805,323,1328:-101.664,-108.889,-186.093,-42.822,-120.027,-113.705,-82.2588,-159.464,-93.397,-157.056,0,-77.2032,-11.1402,-50.5733,-66.6671 0|0:66:15,0,11,18,22:15:580:0,11,18,22:0,428,704,821:-72.9341,-77.4496,-125.086,-42.2737,-89.9106,-86.5993,-19.5669,-67.2049,-32.0283,-61.7863,-10.2454,-57.8796,-22.7055,0,-51.257 dDocent_Contig_4976 13 . A T 2724.68 . AB=0.582192;ABP=11.5772;AC=5;AF=0.625;AN=8;AO=85;CIGAR=2M1X3M1X5M;DP=146;DPB=146;DPRA=0;EPP=187.585;EPPR=55.1256;GTI=0;LEN=1;MEANALT=4.5;MQM=60;MQMR=60;NS=4;NUMALT=5;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3370;QR=938;RO=24;RPL=0;RPP=187.585;RPPR=55.1256;RPR=85;RUN=1;SAF=85;SAP=187.585;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:31:3,3,0,5,6,13:3:120:3,0,5,6,13:120,0,200,238,518:-51.458,-42.4757,-51.458,-52.3611,-52.3611,-62.2465,-35.8854,-35.8854,-45.7709,-44.2657,-32.7702,-32.7702,-42.6556,-26.18,-40.8494,-9.70485,-9.70485,-19.5903,-3.11449,0,-15.6769 0|1:38:7,0,3,3,2,21:7:270:0,3,3,2,21:0,116,121,82,842:-67.2627,-69.3699,-91.538,-59.8439,-82.0114,-81.1083,-59.3954,-81.5633,-72.0367,-80.6602,-62.6012,-84.7691,-75.2425,-74.7944,-84.1671,0,-22.1646,-12.6387,-12.1885,-15.3944,-15.8429 0|1:43:10,0,0,2,5,25:10:389:0,0,2,5,25:0,0,81,198,984:-77.9261,-80.9364,-112.903,-80.9364,-112.903,-112.903,-74.2566,-106.224,-106.224,-105.622,-64.6399,-96.6067,-96.6067,-89.9269,-95.1016,0,-31.9623,-31.9623,-25.2817,-15.6651,-24.4365 0|1:34:4,0,0,3,1,26:4:159:0,0,3,1,26:0,0,120,37,1026:-83.2184,-84.4225,-97.514,-84.4225,-97.514,-97.514,-74.5368,-87.6284,-87.6284,-86.7253,-81.3963,-94.4877,-94.4877,-84.6022,-94.1867,0,-13.0936,-13.0936,-3.20559,-10.0701,-5.26683 dDocent_Contig_4977 13 . C A 1717.63 . AB=0.22069;ABP=199.521;AC=3;AF=0.375;AN=8;AO=65;CIGAR=1M1X;DP=412;DPB=437;DPRA=0;EPP=144.156;EPPR=652.281;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=5.55112e-17;PAIRED=1;PAIREDR=0.993311;PAO=0;PQA=0;PQR=0;PRO=0;QA=2601;QR=11895;RO=299;RPL=0;RPP=144.156;RPPR=652.281;RPR=65;RUN=1;SAF=65;SAP=144.156;SAR=0;SRF=299;SRP=652.281;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:122:121,0,1:121:4853:0,1:0,41:0,-36.4246,-436.254,-32.6311,-432.87,-432.569 0|1:104:87,4,13:87:3454:4,13:155,523:-16.9231,-30.3839,-313.499,0,-271.601,-280.419 0|1:111:55,30,24:55:2189:30,24:1187,946:-81.1241,0,-171.205,-19.8604,-102.416,-192.871 0|1:75:36,12,27:36:1399:12,27:472,1091:-79.1143,-51.1335,-162.454,0,-76.1161,-106.811 dDocent_Contig_4978 21 . A C 369.696 . AB=0.278689;ABP=28.9612;AC=4;AF=0.5;AN=8;AO=17;CIGAR=1X;DP=61;DPB=61;DPRA=0;EPP=39.9253;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=54.3636;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=680;QR=1735;RO=44;RPL=0;RPP=39.9253;RPPR=98.5551;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:6,4:6:235:4:163:-12.0481,0,-18.5104 0/1:13:8,5:8:316:5:193:-13.8232,0,-24.8904 0/1:15:12,3:12:473:3:123:-6.94934,0,-38.3993 0/1:23:18,5:18:711:5:201:-11.5468,0,-49.7907 dDocent_Contig_4979 14 . C A 24302.8 . AB=0.486194;ABP=5.7683;AC=4;AF=0.5;AN=8;AO=810;CIGAR=2X2M;DP=1666;DPB=1666;DPRA=0;EPP=1761.9;EPPR=1390.58;GTI=0;LEN=1;MEANALT=4;MQM=59.642;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=31998;QR=25384;RO=639;RPL=0;RPP=1761.9;RPPR=1390.58;RPR=810;RUN=1;SAF=810;SAP=1761.9;SAR=0;SRF=639;SRP=1390.58;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:548:175,84,269:175:6961:84,269:3194,10652:-822.733,-613.492,-1161.33,0,-311.214,-492.156 0|1:528:187,57,270:187:7405:57,270:2187,10687:-822.407,-699.198,-1291.48,0,-429.949,-528.171 0|1:385:184,20,175:184:7317:20,175:765,6868:-508.596,-501.215,-1097.62,0,-539.658,-549.748 0|1:205:93,14,96:93:3701:14,96:539,3791:-283.938,-267.68,-568.194,0,-260.483,-275.838 dDocent_Contig_4981 17 . G C 7099.76 . AB=0.728155;ABP=142.722;AC=4;AF=0.5;AN=8;AO=225;CIGAR=2X;DP=309;DPB=309;DPRA=0;EPP=491.592;EPPR=165.871;GTI=0;LEN=1;MEANALT=1.75;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.973333;PAO=0;PQA=0;PQR=0;PRO=0;QA=8980;QR=2948;RO=75;RPL=0;RPP=491.592;RPPR=165.871;RPR=225;RUN=1;SAF=225;SAP=491.592;SAR=0;SRF=75;SRP=165.871;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:89:19,65,5:19:738:65,5:2579,191:-206.581,0,-41.0691,-196.632,-44.9672,-255.756 0|1:62:16,43,3:16:631:43,3:1733,119:-138.027,0,-38.9648,-133.048,-42.1127,-184.054 0|1:61:17,43,1:17:665:43,1:1707,41:-135.383,0,-41.7034,-137.116,-51.2626,-191.479 0|1:97:23,74,0:23:914:74,0:2961,0:-237.382,0,-53.3665,-244.306,-75.6427,-319.551 dDocent_Contig_4983 35 . G C 913 . AB=0.517241;ABP=3.16006;AC=1;AF=0.125;AN=8;AO=30;CIGAR=1X;DP=138;DPB=138;DPRA=2.175;EPP=68.1545;EPPR=237.529;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1221;QR=4311;RO=108;RPL=0;RPP=68.1545;RPPR=237.529;RPR=30;RUN=1;SAF=30;SAP=68.1545;SAR=0;SRF=108;SRP=237.529;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:58:28,30:28:1126:30:1221:-92.6979,0,-84.1633 0/0:19:19,0:19:769:0:0:0,-5.71957,-69.5295 0/0:27:27,0:27:1082:0:0:0,-8.12781,-97.6647 0/0:34:34,0:34:1334:0:0:0,-10.235,-120.317 dDocent_Contig_4984 42 . C T 2495.06 . AB=0.191111;ABP=562.411;AC=4;AF=0.5;AN=8;AO=129;CIGAR=1X;DP=675;DPB=675;DPRA=0;EPP=283.13;EPPR=1188.63;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5100;QR=21730;RO=546;RPL=0;RPP=283.13;RPPR=1188.63;RPR=129;RUN=1;SAF=129;SAP=283.13;SAR=0;SRF=546;SRP=1188.63;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:220:172,48:172:6864:48:1885:-103.646,0,-551.223 0/1:202:168,34:168:6682:34:1342:-60.2384,0,-540.287 0/1:180:159,21:159:6323:21:842:-21.9089,0,-514.642 0/1:73:47,26:47:1861:26:1031:-71.111,0,-145.729 dDocent_Contig_4985 21 . A C 9241.05 . AB=0.810198;ABP=298.041;AC=4;AF=0.5;AN=8;AO=286;CIGAR=1X;DP=353;DPB=353;DPRA=0;EPP=624.051;EPPR=146.327;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=11525;QR=2653;RO=66;RPL=0;RPP=624.051;RPPR=146.327;RPR=286;RUN=1;SAF=286;SAP=624.051;SAR=0;SRF=66;SRP=146.327;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:78:15,62:15:608:62:2505:-202.262,0,-31.7314 0/1:118:23,95:23:920:95:3815:-307.82,0,-47.5821 0/1:112:17,95:17:684:95:3834:-311.322,0,-28.1749 0/1:45:11,34:11:441:34:1371:-110.099,0,-26.497 dDocent_Contig_4986 12 . A T 12794.1 . AB=0.083181;ABP=1653.93;AC=4;AF=0.5;AN=8;AO=91;CIGAR=1X3M;DP=1094;DPB=1094;DPRA=0;EPP=200.614;EPPR=910.686;GTI=0;LEN=1;MEANALT=3.5;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=0.925837;PAO=0;PQA=0;PQR=0;PRO=0;QA=3634;QR=16440;RO=418;RPL=0;RPP=200.614;RPPR=910.686;RPR=91;RUN=1;SAF=91;SAP=200.614;SAR=0;SRF=418;SRP=910.686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:343:126,143,59,14:126:4965:143,59,14:5627,2361,556:-424.93,0,-365.415,-268.371,-213.974,-659.076,-417.088,-362.691,-631.065,-821.339 0|1:380:175,153,14,34:175:6871:153,14,34:6027,565,1373:-443.124,0,-519.015,-449.229,-518.497,-1010.09,-382.616,-451.884,-901.12,-937.461 0|1:187:62,76,39,10:62:2434:76,39,10:3015,1568,401:-229.515,0,-177.287,-118.963,-70.9471,-307.39,-215.14,-167.126,-286.091,-412.298 0|1:184:55,63,33,33:55:2170:63,33,33:2500,1305,1304:-189.241,0,-159.575,-98.4179,-71.1592,-267.023,-98.4953,-71.2366,-169.654,-267.101 dDocent_Contig_4988 30 . T C 996.396 . AB=0.146484;ABP=558.788;AC=2;AF=0.25;AN=8;AO=109;CIGAR=1X;DP=983;DPB=983;DPRA=0;EPP=239.701;EPPR=1898.71;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.998855;PAO=0;PQA=0;PQR=0;PRO=0;QA=4155;QR=34771;RO=873;RPL=0;RPP=239.701;RPPR=1898.71;RPR=109;RUN=1;SAF=109;SAP=239.701;SAR=0;SRF=873;SRP=1898.71;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:326:299,27:299:11915:27:1034:0,-4.78572,-978.153 0/1:258:210,48:210:8384:48:1822:-86.5267,0,-676.409 0/1:254:227,27:227:8973:27:1030:-16.5109,0,-730.592 0/0:145:137,7:137:5499:7:269:0,-18.9726,-470.182 dDocent_Contig_4989 149 . C A 391.542 . AB=0.348837;ABP=11.5447;AC=1;AF=0.125;AN=8;AO=15;CIGAR=1X;DP=101;DPB=101;DPRA=2.22414;EPP=35.5824;EPPR=189.757;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=594;QR=3355;RO=86;RPL=0;RPP=35.5824;RPPR=189.757;RPR=15;RUN=1;SAF=0;SAP=35.5824;SAR=15;SRF=0;SRP=189.757;SRR=86;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:31:31,0:31:1196:0:0:0,-9.33193,-107.918 0/1:43:28,15:28:1114:15:594:-40.8532,0,-87.5974 0/0:18:18,0:18:694:0:0:0,-5.41854,-62.7813 0/0:9:9,0:9:351:0:0:0,-2.70927,-31.9466 dDocent_Contig_4990 107 . N G 373.193 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=12;CIGAR=1X;DP=12;DPB=12;DPRA=0;EPP=29.068;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=12.9229;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=411;QR=0;RO=0;RPL=0;RPP=29.068;RPPR=0;RPR=12;RUN=1;SAF=0;SAP=29.068;SAR=12;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:12:0,12:0:0:12:411:-37.3193,-3.61236,0 ./.:.:.:.:.:.:.:. dDocent_Contig_4991 70 . A T 199.237 . AB=0.22449;ABP=35.3165;AC=1;AF=0.125;AN=8;AO=11;CIGAR=1X;DP=131;DPB=131;DPRA=1.79268;EPP=26.8965;EPPR=263.587;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=397;QR=4232;RO=120;RPL=11;RPP=26.8965;RPPR=263.587;RPR=0;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=120;SRP=263.587;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:49:38,11:38:1322:11:397:-21.3217,0,-104.52 0/0:42:42,0:42:1459:0:0:0,-12.6433,-131.589 0/0:14:14,0:14:515:0:0:0,-4.21442,-46.6914 0/0:26:26,0:26:936:0:0:0,-7.82678,-84.5543 dDocent_Contig_4993 26 . G A 269.049 . AB=0.285714;ABP=19.7617;AC=2;AF=0.25;AN=8;AO=12;CIGAR=1X;DP=145;DPB=145;DPRA=0.407767;EPP=29.068;EPPR=291.816;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=469;QR=5320;RO=133;RPL=0;RPP=29.068;RPPR=291.816;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=133;SRP=291.816;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:61:61,0:61:2459:0:0:0,-18.3628,-221.446 0/1:24:18,6:18:708:6:243:-15.0232,0,-56.8186 0/0:42:42,0:42:1687:0:0:0,-12.6433,-152.048 0/1:18:12,6:12:466:6:226:-15.2796,0,-36.8676 dDocent_Contig_4997 1 . N T 195.257 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=6;CIGAR=1X;DP=6;DPB=6;DPRA=0;EPP=16.0391;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=59;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=206;QR=0;RO=0;RPL=0;RPP=16.0391;RPPR=0;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:5:0,5:0:0:5:171:-15.7252,-1.50515,0 ./.:.:.:.:.:.:.:. 1/1:1:0,1:0:0:1:35:-3.49828,-0.30103,0 dDocent_Contig_4998 79 . T G 383.142 . AB=0.247059;ABP=50.2462;AC=1;AF=0.125;AN=8;AO=26;CIGAR=1X;DP=355;DPB=355;DPRA=0.878307;EPP=59.4686;EPPR=717.425;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.923077;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=893;QR=11292;RO=329;RPL=26;RPP=59.4686;RPPR=717.425;RPR=0;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=329;SRP=717.425;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:85:64,21:64:2178:21:722:-39.7122,0,-170.702 0/0:128:128,0:128:4421:0:0:0,-38.5318,-398.088 0/0:81:76,5:76:2595:5:171:0,-8.65685,-218.08 0/0:61:61,0:61:2098:0:0:0,-18.3628,-189.094 dDocent_Contig_4999 13 . A G 94.8582 . AB=0.130952;ABP=102.381;AC=2;AF=0.25;AN=8;AO=16;CIGAR=1X;DP=184;DPB=184;DPRA=0;EPP=37.7539;EPPR=367.818;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.994048;PAO=0;PQA=0;PQR=0;PRO=0;QA=617;QR=6547;RO=168;RPL=0;RPP=37.7539;RPPR=367.818;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=168;SRP=367.818;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:57:54,3:54:2113:3:122:0,-5.78622,-178.993 0/1:56:50,6:50:1963:6:219:-3.19977,0,-160.028 0/0:43:41,2:41:1581:2:79:0,-5.44705,-135.037 0/1:28:23,5:23:890:5:197:-9.67719,0,-71.9871 dDocent_Contig_5000 42 . T A 5615.71 . AB=0.486076;ABP=3.67549;AC=4;AF=0.5;AN=8;AO=192;CIGAR=1X;DP=395;DPB=395;DPRA=0;EPP=419.933;EPPR=443.819;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.985222;PAO=0;PQA=0;PQR=0;PRO=0;QA=7634;QR=8045;RO=203;RPL=0;RPP=419.933;RPPR=443.819;RPR=192;RUN=1;SAF=192;SAP=419.933;SAR=0;SRF=203;SRP=443.819;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:119:72,47:72:2857:47:1884:-133.943,0,-221.416 0/1:168:68,100:68:2688:100:3979:-307.532,0,-191.462 0/1:67:42,25:42:1650:25:974:-67.7905,0,-128.555 0/1:41:21,20:21:850:20:797:-59.7034,0,-64.469 dDocent_Contig_5001 22 . A G 116.689 . AB=0.12963;ABP=67.3502;AC=1;AF=0.125;AN=8;AO=8;CIGAR=3M1X2M;DP=157;DPB=156;DPRA=0.780142;EPP=20.3821;EPPR=309.188;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.875;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=327;QR=5607;RO=141;RPL=0;RPP=20.3821;RPPR=309.188;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=141;SRP=309.188;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:56:55,0,1:55:2200:0,1:0,41:0,-16.5566,-197.77,-12.7631,-194.385,-194.084 0|0:47:47,0,0:47:1868:0,0:0,0:0,-14.1484,-168.336,-14.1484,-168.336,-168.336 0|1:22:16,2,3:16:627:2,3:81,123:-5.33906,-3.4772,-54.4194,0,-44.8666,-50.644 0|0:32:23,5,4:23:912:5,4:202,163:-9.72759,0,-73.553,-3.20241,-61.6092,-77.0596 dDocent_Contig_5002 41 . T C 20750.4 . AB=0.57371;ABP=41.4246;AC=7;AF=0.875;AN=8;AO=467;CIGAR=1X2M;DP=814;DPB=814;DPRA=0;EPP=1017.09;EPPR=194.1;GTI=0;LEN=1;MEANALT=2.25;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=18673;QR=3480;RO=88;RPL=0;RPP=1017.09;RPPR=194.1;RPR=467;RUN=1;SAF=467;SAP=1017.09;SAR=0;SRF=88;SRP=194.1;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:349:49,112,188:49:1954:112,188:4477,7558:-815.92,-461.912,-589.11,-207.847,0,-312.167 1|1:219:20,80,119:20:793:80,119:3212,4766:-585.996,-327.352,-368.543,-199.396,0,-228.845 0|1:116:17,15,83:17:672:15,83:587,3283:-265.067,-221.923,-272.707,0,-7.04212,-30.3233 1|1:130:2,51,77:2:61:51,77:2044,3066:-415.459,-247.664,-237.195,-163.605,0,-145.308 dDocent_Contig_5003 16 . T A 653.285 . AB=0.245902;ABP=71.4295;AC=3;AF=0.375;AN=8;AO=32;CIGAR=2X1M1X2M1X;DP=162;DPB=162;DPRA=0;EPP=72.4974;EPPR=283.13;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=0.5;PAIREDR=0.891473;PAO=0;PQA=0;PQR=0;PRO=0;QA=1262;QR=5083;RO=129;RPL=0;RPP=72.4974;RPPR=283.13;RPR=32;RUN=1;SAF=32;SAP=72.4974;SAR=0;SRF=129;SRP=283.13;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:40:27,13:27:1076:13:507:-33.9348,0,-85.092 0|0:40:37,2:37:1464:2:80:0,-4.55454,-124.418 0|1:38:33,5:33:1288:5:196:-6.57468,0,-104.746 0|1:44:32,12:32:1255:12:479:-30.217,0,-99.9828 dDocent_Contig_5004 1 . N A 40399.5 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=1206;CIGAR=1X1M9I2M;DP=1220;DPB=3965.75;DPRA=0;EPP=2621.81;EPPR=0;GTI=0;LEN=1;MEANALT=3.5;MQM=60;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=0.998342;PAIREDR=0;PAO=0;PQA=0;PQR=37;PRO=1;QA=44909;QR=0;RO=0;RPL=0;RPP=2621.81;RPPR=0;RPR=1206;RUN=1;SAF=1206;SAP=2621.81;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:422:0,415:0:0:415:15454:-1389.98,-124.927,0 1|1:285:0,281:0:0:281:10484:-942.967,-84.5894,0 1|1:269:0,267:0:0:267:9952:-895.116,-80.375,0 1|1:244:0,243:0:0:243:9019:-811.192,-73.1503,0 dDocent_Contig_5006 43 . T C 87.7856 . AB=0.266667;ABP=10.1038;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=87;DPB=87;DPRA=0.625;EPP=11.6962;EPPR=183.243;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=159;QR=3330;RO=83;RPL=0;RPP=11.6962;RPPR=183.243;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=83;SRP=183.243;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:11,4:11:444:4:159:-10.1765,0,-35.8002 0/0:34:34,0:34:1375:0:0:0,-10.235,-124.004 0/0:24:24,0:24:963:0:0:0,-7.22472,-86.9709 0/0:14:14,0:14:548:0:0:0,-4.21442,-49.6592 dDocent_Contig_5007 132 . C T 135.391 . AB=0.166667;ABP=66.7068;AC=1;AF=0.125;AN=8;AO=11;CIGAR=1X;DP=276;DPB=276;DPRA=0.942857;EPP=26.8965;EPPR=578.45;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=383;QR=9140;RO=265;RPL=0;RPP=26.8965;RPPR=578.45;RPR=11;RUN=1;SAF=0;SAP=26.8965;SAR=11;SRF=0;SRP=578.45;SRR=265;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:66:55,11:55:1879:11:383:-14.937,0,-149.521 0/0:71:71,0:71:2468:0:0:0,-21.3731,-222.382 0/0:89:89,0:89:3057:0:0:0,-26.7917,-275.372 0/0:50:50,0:50:1736:0:0:0,-15.0515,-156.529 dDocent_Contig_5008 15 . T A 4134.96 . AB=0.0322581;ABP=297.56;AC=4;AF=0.5;AN=8;AO=5;CIGAR=1M1D2X;DP=270;DPB=233.75;DPRA=0;EPP=13.8677;EPPR=274.444;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=194;QR=4906;RO=125;RPL=0;RPP=13.8677;RPPR=274.444;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=125;SRP=274.444;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:86:45,40,1:45:1774:40,1:1577,38:-116.21,0,-133.924,-126.64,-142.849,-272.291 0|1:77:37,40,0:37:1455:40,0:1603,0:-121.32,0,-108.032,-132.458,-120.073,-252.135 0|1:69:26,39,4:26:1005:39,4:1549,156:-119.699,0,-70.7972,-114.703,-69.7139,-196.035 0|1:38:17,21,0:17:672:21,0:831,0:-63.6649,0,-49.3731,-68.7824,-55.6947,-124.082 dDocent_Contig_5009 11 . A C 4815.19 . AB=0.0512821;ABP=139.423;AC=0;AF=0;AN=8;AO=4;CIGAR=1X1M1X;DP=240;DPB=240;DPRA=0;EPP=11.6962;EPPR=174.557;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=159;QR=3055;RO=79;RPL=0;RPP=11.6962;RPPR=174.557;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=79;SRP=174.557;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:78:19,4,55:19:741:4,55:159,2178:-173.541,-166.169,-225.872,0,-47.8102,-44.3459 0|0:74:39,0,35:39:1522:0,35:0,1384:-102.552,-114.292,-239.402,0,-125.503,-114.967 0|0:66:17,0,49:17:648:0,49:0,1937:-154.678,-159.796,-212.944,0,-53.5323,-38.7818 0|0:22:4,0,18:4:144:0,18:0,716:-58.1465,-59.3507,-71.0906,0,-12.1065,-6.68794 dDocent_Contig_5010 39 . C T 258.551 . AB=0.145985;ABP=152.144;AC=3;AF=0.375;AN=8;AO=20;CIGAR=1X;DP=151;DPB=151;DPRA=3.2619;EPP=46.4397;EPPR=222.23;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.908397;PAO=0;PQA=0;PQR=0;PRO=0;QA=793;QR=5090;RO=131;RPL=0;RPP=46.4397;RPPR=287.473;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=123;SRP=222.23;SRR=8;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:58:49,9:49:1892:9:361:-15.3925,0,-153.028 0/1:49:44,5:44:1709:5:190:-2.71399,0,-139.287 0/1:30:24,6:24:938:6:242:-13.126,0,-75.6846 0/0:14:14,0:14:551:0:0:0,-4.21442,-49.9282 dDocent_Contig_5012 9 . A G 5093.72 . AB=0.858696;ABP=105.825;AC=6;AF=0.75;AN=8;AO=157;CIGAR=1X;DP=170;DPB=170;DPRA=0;EPP=343.931;EPPR=31.2394;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5993;QR=496;RO=13;RPL=0;RPP=343.931;RPPR=31.2394;RPR=157;RUN=1;SAF=157;SAP=343.931;SAR=0;SRF=13;SRP=31.2394;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:23:0,23:0:0:23:874:-78.9775,-6.92369,0 1/1:55:0,55:0:0:55:2113:-190.402,-16.5567,0 0/1:58:7,51:7:264:51:1950:-158.282,0,-6.65983 0/1:34:6,28:6:232:28:1056:-85.1091,0,-11.0139 dDocent_Contig_5013 10 . G A 175.2 . AB=0.116959;ABP=220.932;AC=1;AF=0.125;AN=8;AO=24;CIGAR=1X;DP=357;DPB=357;DPRA=2.43411;EPP=55.1256;EPPR=726.111;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.993994;PAO=0;PQA=0;PQR=0;PRO=0;QA=929;QR=12927;RO=333;RPL=0;RPP=55.1256;RPPR=726.111;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=333;SRP=726.111;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:71:68,3:68:2629:3:122:0,-10.0006,-225.385 0/1:171:151,20:151:5874:20:782:-19.2189,0,-477.044 0/0:72:71,1:71:2734:1:25:0,-19.1743,-243.688 0/0:43:43,0:43:1690:0:0:0,-12.9443,-152.33 dDocent_Contig_5014 25 . T C 3227.73 . AB=0.454976;ABP=6.72547;AC=4;AF=0.5;AN=8;AO=96;CIGAR=1X2M1X;DP=211;DPB=211;DPRA=0;EPP=211.472;EPPR=152.842;GTI=0;LEN=1;MEANALT=2.25;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3778;QR=2711;RO=69;RPL=0;RPP=211.472;RPPR=152.842;RPR=96;RUN=1;SAF=96;SAP=211.472;SAR=0;SRF=69;SRP=152.842;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:41:6,17,18:6:240:17,18:677,727:-94.1048,-40.1655,-54.8167,-35.9767,0,-50.3284 0|1:43:20,14,9:20:773:14,9:555,368:-39.6562,0,-59.2481,-15.3043,-33.0879,-76.0671 0|1:61:25,29,6:25:974:29,6:1124,238:-84.8219,0,-71.3354,-72.754,-60.4714,-150.997 0|1:66:18,36,12:18:724:36,12:1422,478:-111.588,0,-48.8319,-77.6488,-20.3132,-133.706 dDocent_Contig_5016 7 . A C 226.309 . AB=0.117021;ABP=362.273;AC=3;AF=0.375;AN=8;AO=40;CIGAR=1X;DP=388;DPB=388;DPRA=0;EPP=89.8692;EPPR=756.511;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.985591;PAO=0;PQA=0;PQR=0;PRO=0;QA=1512;QR=13234;RO=347;RPL=0;RPP=89.8692;RPPR=756.511;RPR=40;RUN=1;SAF=40;SAP=89.8692;SAR=0;SRF=347;SRP=756.511;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:112:98,14:98:3688:14:532:-14.5062,0,-298.331 0/1:98:86,12:86:3306:12:440:-10.4314,0,-268.182 0/0:106:98,7:98:3737:7:269:0,-7.4138,-311.874 0/1:72:65,7:65:2503:7:271:-3.08228,0,-203.796 dDocent_Contig_5017 8 . G C 537.576 . AB=0.148551;ABP=299.117;AC=1;AF=0.125;AN=8;AO=44;CIGAR=1X;DP=602;DPB=602;DPRA=1.2214;EPP=98.5551;EPPR=1214.69;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.8602;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.996416;PAO=0;PQA=0;PQR=0;PRO=0;QA=1650;QR=21334;RO=558;RPL=0;RPP=98.5551;RPPR=1214.69;RPR=44;RUN=1;SAF=44;SAP=98.5551;SAR=0;SRF=558;SRP=1214.69;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:276:235,41:235:9007:41:1533:-55.1555,0,-727.274 0/0:141:141,0:141:5387:0:0:0,-42.4452,-481.927 0/0:130:130,0:130:4948:0:0:0,-39.1339,-445.352 0/0:55:52,3:52:1992:3:117:0,-5.64627,-168.612 dDocent_Contig_5018 30 . A G 4123.53 . AB=0.671429;ABP=38.7465;AC=5;AF=0.625;AN=8;AO=131;CIGAR=1X;DP=180;DPB=180;DPRA=0;EPP=287.473;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5208;QR=1909;RO=49;RPL=0;RPP=287.473;RPPR=109.412;RPR=131;RUN=1;SAF=131;SAP=287.473;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:51:8,43:8:315:43:1714:-139.128,0,-13.3625 0/1:46:24,22:24:944:22:873:-65.0317,0,-71.4102 0/1:43:14,29:14:544:29:1160:-91.7365,0,-36.3551 1/1:40:3,37:3:106:37:1461:-121.854,-2.15267,0 dDocent_Contig_5019 18 . T C 87.5026 . AB=0.0956522;ABP=329.638;AC=2;AF=0.25;AN=8;AO=33;CIGAR=1X;DP=844;DPB=844;DPRA=0;EPP=74.6689;EPPR=1764.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=2.77556e-17;PAIRED=1;PAIREDR=0.998767;PAO=0;PQA=0;PQR=0;PRO=0;QA=1317;QR=32236;RO=811;RPL=0;RPP=74.6689;RPPR=1764.07;RPR=33;RUN=1;SAF=33;SAP=74.6689;SAR=0;SRF=811;SRP=1764.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:294:290,4:290:11547:4:154:0,-74.2714,-1024.21 0/0:320:313,7:313:12488:7:284:0,-70.3956,-1097.08 0/1:121:108,13:108:4225:13:517:-10.4478,0,-343.808 0/1:109:100,9:100:3976:9:362:-0.130809,0,-325.017 dDocent_Contig_5020 10 . G A 6722.19 . AB=0.385466;ABP=75.1354;AC=4;AF=0.5;AN=8;AO=244;CIGAR=1X;DP=633;DPB=633;DPRA=0;EPP=532.85;EPPR=845.542;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=5.55112e-17;PAIRED=0.967213;PAIREDR=0.997423;PAO=0;PQA=0;PQR=0;PRO=0;QA=9662;QR=15461;RO=388;RPL=0;RPP=532.85;RPPR=845.542;RPR=244;RUN=1;SAF=244;SAP=532.85;SAR=0;SRF=388;SRP=845.542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:237:157,80:157:6277:80:3165:-213.602,0,-493.325 0/1:107:73,34:73:2919:34:1331:-87.846,0,-230.592 0/1:159:91,67:91:3591:67:2670:-192.508,0,-275.294 0/1:130:67,63:67:2674:63:2496:-185.661,0,-201.647 dDocent_Contig_5021 8 . G A 76.4213 . AB=0.166667;ABP=118.822;AC=2;AF=0.25;AN=8;AO=30;CIGAR=1X;DP=235;DPB=235;DPRA=0;EPP=68.1545;EPPR=448.162;GTI=0;LEN=1;MEANALT=1;MQM=30.2667;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.566667;PAIREDR=0.990244;PAO=0;PQA=0;PQR=0;PRO=0;QA=1143;QR=7814;RO=205;RPL=0;RPP=68.1545;RPPR=448.162;RPR=30;RUN=1;SAF=30;SAP=68.1545;SAR=0;SRF=205;SRP=448.162;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:50:42,8:42:1584:8:299:-0.951337,0,-127.771 0/1:70:58,12:58:2226:12:459:-9.3315,0,-179.49 0/0:65:57,8:57:2178:8:309:0,-5.72947,-182.409 0/0:50:48,2:48:1826:2:76:0,-7.92933,-157.466 dDocent_Contig_5022 31 . C A 75.7445 . AB=0.222222;ABP=15.074;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=67;DPB=67;DPRA=1.48148;EPP=13.8677;EPPR=137.642;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=200;QR=2498;RO=62;RPL=0;RPP=13.8677;RPPR=137.642;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:13:13,0:13:527:0:0:0,-3.91339,-47.7762 0/0:22:21,1:21:844:1:41:0,-2.52809,-72.1739 0/0:14:14,0:14:569:0:0:0,-4.21442,-51.5514 0/1:18:14,4:14:558:4:159:-9.27341,0,-45.14 dDocent_Contig_5023 46 . T C 712.55 . AB=0.183168;ABP=179.136;AC=2;AF=0.25;AN=8;AO=37;CIGAR=1X;DP=379;DPB=379;DPRA=1.14124;EPP=83.3548;EPPR=745.654;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1498;QR=13693;RO=342;RPL=0;RPP=83.3548;RPPR=745.654;RPR=37;RUN=1;SAF=37;SAP=83.3548;SAR=0;SRF=342;SRP=745.654;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:97:70,27:70:2810:27:1095:-69.6327,0,-223.807 0/0:109:109,0:109:4373:0:0:0,-32.8123,-393.505 0/1:105:95,10:95:3824:10:403:-5.02012,0,-312.543 0/0:68:68,0:68:2686:0:0:0,-20.47,-241.857 dDocent_Contig_5025 110 . C T 1441.34 . AB=0.259615;ABP=159.607;AC=4;AF=0.5;AN=8;AO=81;CIGAR=1M1X1M;DP=312;DPB=309;DPRA=0;EPP=178.9;EPPR=485.077;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=59.8649;NS=4;NUMALT=2;ODDS=2.77556e-17;PAIRED=1;PAIREDR=0.968468;PAO=0;PQA=0;PQR=0;PRO=0;QA=2687;QR=7134;RO=222;RPL=0;RPP=178.9;RPPR=485.077;RPR=81;RUN=1;SAF=0;SAP=178.9;SAR=81;SRF=0;SRP=485.077;SRR=222;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:100:81,0,19:81:2592:0,19:0,656:-29.2606,-53.644,-262.448,0,-209.145,-203.425 0|1:86:65,0,21:65:2112:0,21:0,662:-33.9892,-53.5562,-224.025,0,-170.787,-164.465 0|1:79:36,9,34:36:1163:9,34:311,1126:-80.2218,-65.7853,-156.878,0,-68.5128,-83.5528 0|1:47:40,0,7:40:1267:0,7:0,243:-8.06042,-20.1016,-122.036,0,-102.277,-100.169 dDocent_Contig_5026 22 . A T 58.8243 . AB=0.109589;ABP=99.6557;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X;DP=199;DPB=199;DPRA=2.01515;EPP=22.5536;EPPR=415.59;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=361;QR=7608;RO=190;RPL=0;RPP=22.5536;RPPR=415.59;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=190;SRP=415.59;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:73:65,8:65:2610:8:321:-7.28036,0,-213.049 0/0:37:37,0:37:1493:0:0:0,-11.1381,-134.612 0/0:60:59,1:59:2375:1:40:0,-14.0661,-209.898 0/0:29:29,0:29:1130:0:0:0,-8.72987,-101.977 dDocent_Contig_5027 173 . C T 139.626 . AB=0.241379;ABP=19.8579;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=103;DPB=103;DPRA=1.17568;EPP=18.2106;EPPR=211.472;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=267;QR=3554;RO=96;RPL=7;RPP=18.2106;RPPR=211.472;RPR=0;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=211.472;SRR=96;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:30:30,0:30:1089:0:0:0,-9.0309,-98.3102 0/0:28:28,0:28:1056:0:0:0,-8.42884,-95.3379 0/1:29:22,7:22:826:7:267:-15.6616,0,-65.9278 0/0:16:16,0:16:583:0:0:0,-4.81648,-52.7959 dDocent_Contig_5028 25 . A T 1371.22 . AB=0.24498;ABP=143.668;AC=2;AF=0.25;AN=8;AO=61;CIGAR=1X;DP=497;DPB=497;DPRA=1.00403;EPP=135.47;EPPR=947.601;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2388;QR=16923;RO=435;RPL=0;RPP=135.47;RPPR=947.601;RPR=61;RUN=1;SAF=61;SAP=135.47;SAR=0;SRF=435;SRP=947.601;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:165:164,0:164:6391:0:0:0,-49.3689,-574.577 0/1:157:105,52:105:4113:52:2024:-135.09,0,-322.892 0/1:92:83,9:83:3232:9:364:-5.42962,0,-263.269 0/0:83:83,0:83:3187:0:0:0,-24.9855,-286.925 dDocent_Contig_5029 7 . T A 3144.94 . AB=0.446215;ABP=9.31709;AC=4;AF=0.5;AN=8;AO=112;CIGAR=1X6M;DP=251;DPB=251;DPRA=0;EPP=246.215;EPPR=174.557;GTI=0;LEN=1;MEANALT=3.75;MQM=51.375;MQMR=60;NS=4;NUMALT=4;ODDS=0;PAIRED=0.901786;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=4252;QR=3075;RO=79;RPL=0;RPP=246.215;RPPR=174.557;RPR=112;RUN=1;SAF=112;SAP=246.215;SAR=0;SRF=79;SRP=174.557;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:117:42,16,11,0,45:42:1628:16,11,0,45:625,284,0,1708:-126.826,-95.0614,-224.008,-120.216,-209.567,-250.659,-139.469,-228.824,-253.97,-273.231,0,-89.3902,-114.545,-133.797,-120.251 0|1:58:9,8,1,0,39:9:358:8,1,0,39:315,18,0,1494:-119.027,-97.8115,-124.885,-120.69,-126.247,-149.87,-121.736,-127.294,-150.171,-151.218,0,-5.58064,-28.4696,-29.5089,-17.7688 0|1:52:13,14,0,0,25:13:506:14,0,0,25:540,0,0,937:-71.201,-33.6901,-71.0691,-75.1144,-75.2835,-116.706,-75.1144,-75.2835,-116.706,-116.706,0,-0.186526,-41.5989,-41.5989,-34.0731 0|1:24:15,1,2,3,3:15:583:1,2,3,3:38,52,51,113:-4.77251,-6.2433,-53.9384,-5.76067,-50.7129,-53.1431,-6.46084,-51.3804,-50.8895,-53.5087,0,-45.0018,-44.5091,-45.1786,-47.1318 dDocent_Contig_5030 8 . G C 3473.74 . AB=0.281609;ABP=219.259;AC=4;AF=0.5;AN=8;AO=147;CIGAR=1X;DP=522;DPB=522;DPRA=0;EPP=322.217;EPPR=797.769;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=2.77556e-17;PAIRED=0.829932;PAIREDR=0.915301;PAO=0;PQA=0;PQR=0;PRO=0;QA=5654;QR=13912;RO=366;RPL=0;RPP=322.217;RPPR=797.769;RPR=147;RUN=1;SAF=147;SAP=322.217;SAR=0;SRF=366;SRP=797.769;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:180:136,36:136:5212:36:1381:-72.408,0,-416.918 0/1:213:130,83:130:4907:83:3198:-223.846,0,-377.551 0/1:95:72,23:72:2742:23:884:-51.2817,0,-218.372 0/1:34:28,5:28:1051:5:191:-7.23633,0,-84.5705 dDocent_Contig_5031 13 . G C 65.4433 . AB=0.0944444;ABP=260.161;AC=1;AF=0.125;AN=8;AO=29;CIGAR=1X;DP=529;DPB=529;DPRA=2.15023;EPP=65.983;EPPR=1088.75;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.99;PAO=0;PQA=0;PQR=0;PRO=0;QA=1181;QR=20062;RO=500;RPL=0;RPP=65.983;RPPR=1088.75;RPR=29;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=500;SRP=1088.75;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:178:167,11:167:6708:11:450:0,-12.7276,-562.55 0/1:180:163,17:163:6566:17:690:-8.2433,0,-536.441 0/0:100:99,1:99:3946:1:41:0,-26.0084,-351.025 0/0:71:71,0:71:2842:0:0:0,-21.3731,-255.869 dDocent_Contig_5032 89 . G T 4315.49 . AB=0.589928;ABP=22.5379;AC=4;AF=0.5;AN=8;AO=164;CIGAR=1X;DP=278;DPB=278;DPRA=0;EPP=359.132;EPPR=250.558;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5794;QR=3931;RO=114;RPL=164;RPP=359.132;RPPR=250.558;RPR=0;RUN=1;SAF=164;SAP=359.132;SAR=0;SRF=114;SRP=250.558;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:93:52,41:52:1777:41:1454:-103.161,0,-132.218 0/1:81:21,60:21:728:60:2147:-169.115,0,-41.4588 0/1:75:33,42:33:1148:42:1483:-111.187,0,-81.0513 0/1:29:8,21:8:278:21:710:-55.4835,0,-16.6281 dDocent_Contig_5033 41 . T A 92.2533 . AB=0.1;ABP=267.061;AC=1;AF=0.125;AN=8;AO=23;CIGAR=1X;DP=459;DPB=459;DPRA=1.34184;EPP=52.9542;EPPR=949.772;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.995413;PAO=0;PQA=0;PQR=0;PRO=0;QA=910;QR=17332;RO=436;RPL=0;RPP=52.9542;RPPR=949.772;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=436;SRP=949.772;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:190:171,19:171:6800:19:750:-10.6233,0,-554.493 0/0:140:140,0:140:5545:0:0:0,-42.1442,-498.894 0/0:73:69,4:69:2753:4:160:0,-7.19176,-233.099 0/0:56:56,0:56:2234:0:0:0,-16.8577,-201.229 dDocent_Contig_5034 52 . G A 380.702 . AB=0.196078;ABP=84.845;AC=2;AF=0.25;AN=8;AO=22;CIGAR=1X;DP=236;DPB=236;DPRA=0.915344;EPP=50.7827;EPPR=467.705;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=854;QR=8409;RO=214;RPL=22;RPP=50.7827;RPPR=467.705;RPR=0;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=214;SRP=467.705;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:63:63,0:63:2491:0:0:0,-18.9649,-224.345 0/0:71:69,2:69:2706:2:60:0,-15.6783,-237.965 0/1:67:52,15:52:2037:15:597:-33.8992,0,-163.348 0/1:35:30,5:30:1175:5:197:-7.56886,0,-95.4968 dDocent_Contig_5035 1 . N G 77.8076 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:82:-7.77968,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_5036 59 . C T 2493.74 . AB=0.243191;ABP=297.452;AC=4;AF=0.5;AN=8;AO=125;CIGAR=1X;DP=514;DPB=514;DPRA=0;EPP=274.444;EPPR=847.713;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4553;QR=14985;RO=389;RPL=125;RPP=274.444;RPPR=847.713;RPR=0;RUN=1;SAF=125;SAP=274.444;SAR=0;SRF=389;SRP=847.713;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:173:118,55:118:4554:55:2042:-131.936,0,-357.74 0/1:134:98,36:98:3805:36:1294:-76.4014,0,-302.153 0/1:144:116,28:116:4446:28:994:-46.404,0,-356.779 0/1:63:57,6:57:2180:6:223:-1.46234,0,-177.411 dDocent_Contig_5037 58 . T C 397.348 . AB=0.225;ABP=55.5599;AC=1;AF=0.125;AN=8;AO=24;CIGAR=1X;DP=252;DPB=252;DPRA=2.15;EPP=55.1256;EPPR=498.106;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=963;QR=9094;RO=228;RPL=24;RPP=55.1256;RPPR=498.106;RPR=0;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=228;SRP=498.106;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:80:62,18:62:2466:18:721:-41.1327,0,-198.003 0/0:92:86,6:86:3423:6:242:0,-5.53781,-285.961 0/0:41:41,0:41:1627:0:0:0,-12.3422,-146.66 0/0:39:39,0:39:1578:0:0:0,-11.7402,-142.25 dDocent_Contig_5038 50 . C T 11666.8 . AB=0.810924;ABP=202.859;AC=6;AF=0.75;AN=8;AO=366;CIGAR=1X;DP=420;DPB=420;DPRA=0;EPP=190.991;EPPR=120.27;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.989071;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=14160;QR=2136;RO=54;RPL=272;RPP=190.991;RPPR=120.27;RPR=94;RUN=1;SAF=366;SAP=797.769;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:142:14,128:14:547:128:4982:-405.55,0,-6.82574 0/1:96:31,65:31:1232:65:2527:-198.677,0,-82.2573 1/1:101:3,98:3:122:98:3771:-328.056,-19.0315,0 1/1:81:6,75:6:235:75:2880:-237.796,-2.86268,0 dDocent_Contig_5039 122 . C T 175.205 . AB=0.179104;ABP=62.9365;AC=2;AF=0.25;AN=8;AO=14;CIGAR=1X3M;DP=133;DPB=133;DPRA=2.62222;EPP=33.4109;EPPR=250.558;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=510;QR=4087;RO=114;RPL=0;RPP=33.4109;RPPR=250.558;RPR=14;RUN=1;SAF=0;SAP=33.4109;SAR=14;SRF=0;SRP=250.558;SRR=114;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:36:23,5,8:23:830:5,8:185,288:-16.5679,-8.35272,-74.5866,0,-52.5942,-65.3227 0|0:51:49,0,2:49:1758:0,2:0,74:0,-14.7505,-158.127,-8.32665,-152.072,-151.47 0|1:31:27,0,4:27:952:0,4:0,148:-4.35004,-12.4778,-89.9719,0,-77.8616,-76.6575 0|0:15:15,0,0:15:547:0,0:0,0:0,-4.51545,-49.5681,-4.51545,-49.5681,-49.5681 dDocent_Contig_5041 107 . N T 75.9564 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=75;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:41:-3.89396,-0.60206,0 1/1:1:0,1:0:0:1:34:-3.39891,-0.30103,0 ./.:.:.:.:.:.:.:. dDocent_Contig_5043 8 . A G 6192.98 . AB=0.35536;ABP=126.759;AC=4;AF=0.5;AN=8;AO=242;CIGAR=2X;DP=681;DPB=681;DPRA=0;EPP=528.507;EPPR=947.601;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=59.8483;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=9231;QR=16593;RO=435;RPL=0;RPP=528.507;RPPR=947.601;RPR=242;RUN=1;SAF=242;SAP=528.507;SAR=0;SRF=435;SRP=947.601;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:197:135,61:135:5146:61:2327:-150.256,0,-402.922 0|1:248:156,90:156:5945:90:3455:-236.642,0,-460.578 0|1:130:80,49:80:3065:49:1849:-127.436,0,-236.795 0|1:106:64,42:64:2437:42:1600:-112.361,0,-187.633 dDocent_Contig_5044 107 . N A 107.377 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=108;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0 1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0 dDocent_Contig_5045 16 . C T 815.457 . AB=0.116279;ABP=222.986;AC=0;AF=0;AN=8;AO=22;CIGAR=1M1X4M;DP=328;DPB=294.667;DPRA=0;EPP=50.7827;EPPR=487.249;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=5.55112e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=873;QR=8845;RO=223;RPL=0;RPP=50.7827;RPPR=487.249;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=223;SRP=487.249;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:96:40,21,17,18:40:1600:21,17,18:754,680,697:-49.4414,0,-125.482,-5.46092,-75.7893,-132.157,-4.22672,-74.5538,-80.0219,-130.62 0|0:110:99,8,2,0:99:3914:8,2,0:301,75,0:0,-5.13427,-324.838,-23.6598,-321.104,-345.164,-29.802,-327.246,-345.766,-351.908 0|0:76:63,9,3,0:63:2512:9,3,0:338,118,0:-8.70915,0,-204.163,-17.9646,-197.166,-223.949,-27.674,-206.872,-224.852,-234.558 0|0:46:21,12,0,11:21:819:12,0,11:419,0,427:-28.7833,-1.04169,-64.7569,-35.1049,-68.3693,-102.433,0,-33.2843,-67.3463,-64.0349 dDocent_Contig_5047 143 . C T 72.4646 . AB=0.0987654;ABP=229.54;AC=2;AF=0.25;AN=8;AO=18;CIGAR=1X;DP=250;DPB=250;DPRA=1.98148;EPP=42.0968;EPPR=506.792;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=724;QR=9018;RO=232;RPL=0;RPP=42.0968;RPPR=506.792;RPR=18;RUN=1;SAF=0;SAP=42.0968;SAR=18;SRF=0;SRP=506.792;SRR=232;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:105:94,11:94:3620:11:443:-8.61776,0,-294.242 0/1:57:52,5:52:1983:5:202:-1.40316,0,-161.503 0/0:36:36,0:36:1427:0:0:0,-10.8371,-128.684 0/0:52:50,2:50:1988:2:79:0,-8.15631,-171.622 dDocent_Contig_5048 12 . G A 1667.94 . AB=0.171577;ABP=543.587;AC=4;AF=0.5;AN=8;AO=99;CIGAR=1X;DP=577;DPB=577;DPRA=0;EPP=217.986;EPPR=1040.97;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3852;QR=18910;RO=478;RPL=0;RPP=217.986;RPPR=1040.97;RPR=99;RUN=1;SAF=99;SAP=217.986;SAR=0;SRF=478;SRP=1040.97;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:168:140,28:140:5521:28:1118:-50.3352,0,-446.16 0/1:155:112,43:112:4460:43:1655:-102.534,0,-354.666 0/1:128:115,13:115:4559:13:495:-6.35812,0,-371.718 0/1:126:111,15:111:4370:15:584:-14.9639,0,-355.329 dDocent_Contig_5049 27 . T G 695.996 . AB=0.273585;ABP=50.2091;AC=2;AF=0.25;AN=8;AO=29;CIGAR=1X;DP=342;DPB=342;DPRA=0.449153;EPP=65.983;EPPR=680.51;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1159;QR=12513;RO=312;RPL=0;RPP=65.983;RPPR=680.51;RPR=29;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=312;SRP=680.51;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:179:179,0:179:7194:0:0:0,-53.8844,-647.094 0/0:57:57,0:57:2271:0:0:0,-17.1587,-204.553 0/1:43:28,15:28:1126:15:598:-41.2111,0,-88.6761 0/1:63:48,14:48:1922:14:561:-31.7864,0,-154.134 dDocent_Contig_5050 54 . G A 207.09 . AB=0.257143;ABP=20.9405;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X;DP=281;DPB=281;DPRA=0.426829;EPP=22.5536;EPPR=593.651;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=362;QR=10767;RO=272;RPL=9;RPP=22.5536;RPPR=593.651;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=272;SRP=593.651;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:48:48,0:48:1915:0:0:0,-14.4494,-172.554 0/0:125:125,0:125:4985:0:0:0,-37.6287,-448.539 0/0:73:73,0:73:2829:0:0:0,-21.9752,-254.722 0/1:35:26,9:26:1038:9:362:-22.4079,0,-83.1743 dDocent_Contig_5051 51 . G A 4623.17 . AB=0.615894;ABP=20.6265;AC=5;AF=0.625;AN=8;AO=148;CIGAR=1X;DP=210;DPB=210;DPRA=0;EPP=324.388;EPPR=137.642;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5857;QR=2454;RO=62;RPL=148;RPP=324.388;RPPR=137.642;RPR=0;RUN=1;SAF=148;SAP=324.388;SAR=0;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:96:39,57:39:1526:57:2261:-174.759,0,-108.677 1/1:59:4,55:4:162:55:2176:-181.057,-2.79381,0 0/1:31:8,23:8:325:23:905:-72.4264,0,-20.2875 0/1:24:11,13:11:441:13:515:-39.4715,0,-32.8209 dDocent_Contig_5052 25 . G A 23941.5 . AB=0.857459;ABP=1007.43;AC=4;AF=0.5;AN=8;AO=776;CIGAR=1X;DP=905;DPB=905;DPRA=0;EPP=1688.07;EPPR=283.13;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=29723;QR=5025;RO=129;RPL=0;RPP=1688.07;RPPR=283.13;RPR=776;RUN=1;SAF=776;SAP=1688.07;SAR=0;SRF=129;SRP=283.13;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:292:35,257:35:1361:257:9801:-793.703,0,-34.8551 0/1:193:37,156:37:1467:156:6032:-484.623,0,-74.1837 0/1:161:25,136:25:974:136:5239:-422.963,0,-39.4803 0/1:259:32,227:32:1223:227:8651:-700.259,0,-32.3697 dDocent_Contig_5053 140 . T G 41.6131 . AB=0.0857143;ABP=55.1877;AC=1;AF=0.125;AN=8;AO=3;CIGAR=4M1X2M1D2M1X3M1X1M2X1M1X;DP=75;DPB=74.75;DPRA=0;EPP=9.52472;EPPR=88.4809;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=4;ODDS=0;PAIRED=0;PAIREDR=0.901639;PAO=0;PQA=0;PQR=0;PRO=0;QA=119;QR=2213;RO=61;RPL=0;RPP=9.52472;RPPR=135.47;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=6;SRP=88.4809;SRR=55;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:18:14,2,0,2,0:14:532:2,0,2,0:79,0,76,0:-2.294,0,-43.0282,-6.50842,-43.6303,-50.1329,-0.283375,-37.3978,-43.9006,-43.2985,-6.50842,-43.6303,-50.1329,-43.9006,-50.1329 0|0:26:21,0,0,0,3:21:763:0,0,0,3:0,0,0,120:-3.66485,-9.98648,-72.3199,-9.98648,-72.3199,-72.3199,-9.98648,-72.3199,-72.3199,-72.3199,0,-62.4297,-62.4297,-62.4297,-61.5266 0|0:14:12,0,2,0,0:12:417:0,2,0,0:0,75,0,0:-2.90568,-6.51804,-40.3913,0,-34.2441,-33.642,-6.51804,-40.3913,-34.2441,-40.3913,-6.51804,-40.3913,-34.2441,-40.3913,-40.3913 0|0:17:14,1,0,0,2:14:501:1,0,0,2:40,0,0,82:-2.56033,-3.48297,-43.9887,-6.77475,-44.2897,-47.5869,-6.77475,-44.2897,-47.5869,-47.5869,0,-37.5151,-40.813,-40.813,-40.2109 dDocent_Contig_5054 13 . A G 1616.99 . AB=0.19213;ABP=358.669;AC=4;AF=0.5;AN=8;AO=83;CIGAR=1X;DP=432;DPB=432;DPRA=0;EPP=183.243;EPPR=760.854;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3310;QR=13969;RO=349;RPL=0;RPP=183.243;RPPR=760.854;RPR=83;RUN=1;SAF=83;SAP=183.243;SAR=0;SRF=349;SRP=760.854;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:146:117,29:117:4663:29:1159:-60.6366,0,-375.63 0/1:73:54,19:54:2156:19:739:-44.8435,0,-172.247 0/1:127:103,24:103:4127:24:967:-49.0996,0,-333.164 0/1:86:75,11:75:3023:11:445:-14.5171,0,-246.26 dDocent_Contig_5055 14 . C G 777.344 . AB=0.482759;ABP=3.16006;AC=2;AF=0.25;AN=8;AO=31;CIGAR=1X3M1X;DP=129;DPB=129;DPRA=1.1;EPP=70.3259;EPPR=215.815;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1207;QR=3880;RO=98;RPL=0;RPP=70.3259;RPPR=215.815;RPR=31;RUN=1;SAF=31;SAP=70.3259;SAR=0;SRF=98;SRP=215.815;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:43:20,23:20:795:23:900:-68.3652,0,-58.9238 0|0:41:38,3:38:1503:3:119:0,-1.24684,-124.428 0|0:30:30,0:30:1184:0:0:0,-9.0309,-106.844 0|1:15:10,5:10:398:5:188:-12.7671,0,-31.6643 dDocent_Contig_5056 47 . A T 360.86 . AB=0.169118;ABP=132.341;AC=4;AF=0.5;AN=8;AO=23;CIGAR=1X;DP=136;DPB=136;DPRA=0;EPP=52.9542;EPPR=248.387;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=919;QR=4477;RO=113;RPL=0;RPP=52.9542;RPPR=248.387;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=113;SRP=248.387;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:52:40,12:40:1583:12:476:-27.5324,0,-127.046 0/1:51:46,5:46:1839:5:201:-3.11815,0,-150.366 0/1:19:17,2:17:656:2:80:-1.87222,0,-53.6499 0/1:14:10,4:10:399:4:162:-10.7523,0,-32.0544 dDocent_Contig_5060 46 . T C 6664.56 . AB=0.653614;ABP=71.0585;AC=4;AF=0.5;AN=8;AO=217;CIGAR=1X;DP=332;DPB=332;DPRA=0;EPP=474.22;EPPR=244.119;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=8590;QR=4531;RO=115;RPL=0;RPP=474.22;RPPR=244.119;RPR=217;RUN=1;SAF=217;SAP=474.22;SAR=0;SRF=115;SRP=252.73;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:109:42,67:42:1683:67:2652:-205.99,0,-118.886 0/1:88:20,68:20:771:68:2730:-219.319,0,-43.2037 0/1:98:37,61:37:1449:61:2362:-183.231,0,-101.162 0/1:37:16,21:16:628:21:846:-65.3144,0,-45.7113 dDocent_Contig_5061 188 . C A 2761.16 . AB=0.309973;ABP=119.374;AC=3;AF=0.375;AN=8;AO=126;CIGAR=1X;DP=509;DPB=509;DPRA=0;EPP=276.616;EPPR=750.093;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=58.8903;NS=4;NUMALT=1;ODDS=2.77556e-17;PAIRED=1;PAIREDR=0.94517;PAO=0;PQA=0;PQR=0;PRO=0;QA=4795;QR=14479;RO=383;RPL=126;RPP=276.616;RPPR=750.093;RPR=0;RUN=1;SAF=0;SAP=276.616;SAR=126;SRF=0;SRP=834.684;SRR=383;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:138:64,74:64:2477:74:2753:-206.387,0,-181.505 0/1:138:109,29:109:4062:29:1136:-60.9863,0,-319.942 0/0:138:127,11:127:4760:11:435:0,-2.03841,-387.575 0/1:95:83,12:83:3180:12:471:-14.1405,0,-257.602 dDocent_Contig_5064 82 . T A 3960.81 . AB=0.656388;ABP=51.2323;AC=4;AF=0.5;AN=8;AO=149;CIGAR=1X;DP=227;DPB=227;DPRA=0;EPP=326.56;EPPR=172.385;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5229;QR=2844;RO=78;RPL=149;RPP=326.56;RPPR=172.385;RPR=0;RUN=1;SAF=149;SAP=326.56;SAR=0;SRF=78;SRP=172.385;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:97:17,80:17:613:80:2814:-224.303,0,-26.3028 0/1:45:14,31:14:515:31:1091:-84.9539,0,-33.1449 0/1:45:31,14:31:1132:14:496:-31.4284,0,-88.6413 0/1:40:16,24:16:584:24:828:-62.7935,0,-40.8552 dDocent_Contig_5065 8 . A G 3551.51 . AB=0.332564;ABP=108.45;AC=4;AF=0.5;AN=8;AO=144;CIGAR=1X;DP=433;DPB=433;DPRA=0;EPP=315.702;EPPR=630.566;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.986111;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5464;QR=10932;RO=289;RPL=0;RPP=315.702;RPPR=630.566;RPR=144;RUN=1;SAF=144;SAP=315.702;SAR=0;SRF=289;SRP=630.566;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:106:72,34:72:2746:34:1288:-84.2998,0,-215.415 0/1:138:90,48:90:3419:48:1830:-123.411,0,-266.306 0/1:105:74,31:74:2762:31:1173:-74.2576,0,-217.164 0/1:84:53,31:53:2005:31:1173:-80.5806,0,-155.398 dDocent_Contig_5066 32 . A G 276.15 . AB=0.141791;ABP=152.356;AC=1;AF=0.125;AN=8;AO=40;CIGAR=1X;DP=529;DPB=529;DPRA=0;EPP=89.8692;EPPR=1064.86;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.8548;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1573;QR=19624;RO=489;RPL=0;RPP=89.8692;RPPR=1064.86;RPR=40;RUN=1;SAF=40;SAP=89.8692;SAR=0;SRF=489;SRP=1064.86;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:134:115,19:115:4615:19:767:-29.0129,0,-374.763 0/0:153:142,11:142:5708:11:412:0,-8.63504,-476.094 0/0:133:127,6:127:5085:6:232:0,-18.7902,-436.2 0/0:109:105,4:105:4216:4:162:0,-17.8453,-364.428 dDocent_Contig_5067 64 . A T 2656.55 . AB=0.331361;ABP=86.5028;AC=4;AF=0.5;AN=8;AO=112;CIGAR=1X;DP=338;DPB=338;DPRA=0;EPP=246.215;EPPR=493.763;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4151;QR=8460;RO=226;RPL=112;RPP=246.215;RPPR=493.763;RPR=0;RUN=1;SAF=112;SAP=246.215;SAR=0;SRF=226;SRP=493.763;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:131:76,55:76:2841:55:2017:-142.336,0,-216.433 0/1:117:86,31:86:3194:31:1182:-71.4531,0,-252.397 0/1:57:37,20:37:1394:20:723:-48.2224,0,-108.581 0/1:33:27,6:27:1031:6:229:-11.0415,0,-83.166 dDocent_Contig_5068 35 . G T 44.4607 . AB=0.137931;ABP=36.0317;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=87;DPB=87;DPRA=1.5;EPP=11.6962;EPPR=183.243;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=161;QR=3329;RO=83;RPL=0;RPP=11.6962;RPPR=183.243;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=83;SRP=183.243;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:28:28,0:28:1114:0:0:0,-8.42884,-100.543 0/1:29:25,4:25:1007:4:161:-6.14503,0,-82.1958 0/0:17:17,0:17:688:0:0:0,-5.11751,-62.2493 0/0:13:13,0:13:520:0:0:0,-3.91339,-47.1434 dDocent_Contig_5069 13 . G A 3382.47 . AB=0.68323;ABP=49.96;AC=4;AF=0.5;AN=8;AO=110;CIGAR=1X2M;DP=161;DPB=161;DPRA=0;EPP=241.872;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.963636;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4324;QR=1652;RO=43;RPL=0;RPP=241.872;RPPR=96.3836;RPR=110;RUN=1;SAF=110;SAP=241.872;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:59:13,8,38:13:495:8,38:323,1497:-119.215,-96.4991,-134.687,0,-13.9488,-29.1461 0|1:39:14,0,25:14:550:0,25:0,962:-75.1261,-79.3406,-124.581,0,-45.6304,-38.1046 0|1:51:15,0,36:15:569:0,36:0,1416:-112.333,-116.849,-163.496,0,-47.0302,-36.1931 0|1:12:1,0,11:1:38:0,11:0,449:-37.1535,-37.4545,-40.5687,0,-3.49624,-0.184909 dDocent_Contig_5070 34 . T C 10302.3 . AB=0.787185;ABP=316.065;AC=4;AF=0.5;AN=8;AO=344;CIGAR=1X1M;DP=437;DPB=437;DPRA=0;EPP=749.997;EPPR=144.156;GTI=0;LEN=1;MEANALT=1.75;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=12901;QR=2577;RO=65;RPL=0;RPP=749.997;RPPR=144.156;RPR=344;RUN=1;SAF=344;SAP=749.997;SAR=0;SRF=65;SRP=144.156;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:121:17,10,94:17:671:10,94:390,3542:-285.085,-258.145,-310.346,0,-23.1567,-26.9145 0|1:132:20,17,95:20:789:17,95:667,3518:-281.71,-232.875,-292.677,0,-10.0652,-36.3184 0|1:70:7,0,62:7:283:0,62:0,2341:-190.027,-192.135,-215.47,0,-23.6157,-4.95183 0|1:114:21,0,93:21:834:0,93:0,3500:-280.803,-287.125,-355.786,0,-69.0539,-41.0581 dDocent_Contig_5071 187 . C T 2453.36 . AB=0.306306;ABP=111.525;AC=4;AF=0.5;AN=8;AO=102;CIGAR=1X;DP=333;DPB=333;DPRA=0;EPP=224.5;EPPR=504.62;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.9654;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3909;QR=8920;RO=231;RPL=102;RPP=224.5;RPPR=504.62;RPR=0;RUN=1;SAF=0;SAP=224.5;SAR=102;SRF=0;SRP=504.62;SRR=231;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:134:93,41:93:3621:41:1605:-104.343,0,-285.582 0/1:95:76,19:76:2915:19:733:-37.693,0,-233.866 0/1:74:40,34:40:1568:34:1268:-92.1067,0,-119.08 0/1:30:22,8:22:816:8:303:-18.591,0,-64.7054 dDocent_Contig_5072 31 . C A 8439.97 . AB=0.675743;ABP=111.39;AC=4;AF=0.5;AN=8;AO=273;CIGAR=1X;DP=404;DPB=404;DPRA=0;EPP=595.822;EPPR=287.473;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=10806;QR=5147;RO=131;RPL=0;RPP=595.822;RPPR=287.473;RPR=273;RUN=1;SAF=273;SAP=595.822;SAR=0;SRF=131;SRP=287.473;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:156:55,101:55:2197:101:4000:-313.035,0,-150.945 0/1:167:43,124:43:1640:124:4950:-395.121,0,-97.5497 0/1:45:19,26:19:746:26:1004:-77.0986,0,-53.9173 0/1:36:14,22:14:564:22:852:-66.141,0,-40.2663 dDocent_Contig_5073 7 . A G 201.793 . AB=0.162393;ABP=118.841;AC=2;AF=0.25;AN=8;AO=19;CIGAR=1X3M1X;DP=210;DPB=210;DPRA=1.25806;EPP=44.2683;EPPR=415.59;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.952632;PAO=0;PQA=0;PQR=0;PRO=0;QA=647;QR=7308;RO=190;RPL=0;RPP=44.2683;RPPR=415.59;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=190;SRP=415.59;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:47:39,8:39:1505:8:282:-11.5676,0,-121.575 0|1:70:58,11:58:2225:11:365:-12.0096,0,-179.31 0|0:50:50,0:50:1925:0:0:0,-15.0515,-173.494 0|0:43:43,0:43:1653:0:0:0,-12.9443,-149.034 dDocent_Contig_5074 18 . G A 12353.7 . AB=0.851964;ABP=359.165;AC=5;AF=0.625;AN=8;AO=379;CIGAR=1X;DP=429;DPB=429;DPRA=0;EPP=825.998;EPPR=109.412;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.997361;PAIREDR=0.959184;PAO=0;PQA=0;PQR=0;PRO=0;QA=14893;QR=1955;RO=49;RPL=0;RPP=825.998;RPPR=109.412;RPR=379;RUN=1;SAF=379;SAP=825.998;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:162:25,137:25:1008:137:5371:-434.511,0,-42.2479 0/1:114:13,101:13:507:101:3994:-325.151,0,-11.6552 1/1:98:0,97:0:0:97:3816:-343.361,-29.1999,0 0/1:55:11,44:11:440:44:1712:-137.744,0,-23.397 dDocent_Contig_5076 14 . A T 526.016 . AB=0.16318;ABP=238.52;AC=3;AF=0.375;AN=8;AO=51;CIGAR=1X;DP=387;DPB=387;DPRA=0;EPP=113.755;EPPR=732.625;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1856;QR=12882;RO=336;RPL=0;RPP=113.755;RPPR=732.625;RPR=51;RUN=1;SAF=51;SAP=113.755;SAR=0;SRF=336;SRP=732.625;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:113:90,23:90:3472:23:850:-42.8038,0,-278.572 0/0:148:136,12:136:5185:12:442:0,-4.42928,-426.49 0/1:61:51,10:51:1952:10:347:-13.1935,0,-157.541 0/1:65:59,6:59:2273:6:217:-0.312089,0,-185.199 dDocent_Contig_5077 37 . T C 10136.1 . AB=0.42446;ABP=16.789;AC=8;AF=1;AN=8;AO=229;CIGAR=1X3M;DP=398;DPB=398;DPRA=0;EPP=500.277;EPPR=96.3836;GTI=0;LEN=1;MEANALT=2.25;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=9169;QR=1678;RO=43;RPL=0;RPP=500.277;RPPR=96.3836;RPR=229;RUN=1;SAF=229;SAP=500.277;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:120:0,8,111:0:0:8,111:322,4477:-402.447,-375.909,-373.5,-33.4143,-6.81215,0 1|1:113:9,33,71:9:348:33,71:1302,2813:-307.339,-202.926,-221.571,-78.5504,0,-85.7557 1|1:119:27,64,28:27:1079:64,28:2534,1120:-203.801,-3.37895,-72.9862,-119.675,0,-200.121 1|1:46:7,20,19:7:251:20,19:795,759:-105.427,-42.0815,-56.5145,-45.0275,0,-59.7625 dDocent_Contig_5078 7 . A C 108.323 . AB=0.131579;ABP=92.6121;AC=1;AF=0.125;AN=8;AO=14;CIGAR=1X;DP=184;DPB=184;DPRA=1.78161;EPP=33.4109;EPPR=369.989;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=0;PAIREDR=0.940828;PAO=0;PQA=0;PQR=0;PRO=0;QA=539;QR=6478;RO=169;RPL=0;RPP=33.4109;RPPR=369.989;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=169;SRP=369.989;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:76:65,10:65:2490:10:387:-12.2301,0,-201.346 0/0:52:50,2:50:1899:2:74:0,-8.62813,-164.132 0/0:27:25,2:25:960:2:78:0,-0.724337,-79.3111 0/0:29:29,0:29:1129:0:0:0,-8.72987,-101.911 dDocent_Contig_5079 33 . T G 23188.3 . AB=0.843284;ABP=277.329;AC=7;AF=0.875;AN=8;AO=688;CIGAR=1X;DP=746;DPB=746;DPRA=0;EPP=1496.98;EPPR=100.727;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=27007;QR=1800;RO=45;RPL=0;RPP=1496.98;RPPR=100.727;RPR=688;RUN=1;SAF=688;SAP=1496.98;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:268:37,226:37:1482:226:8856:-717.021,0,-54.0503 1/1:229:0,226:0:0:226:8847:-795.394,-68.0328,0 1/1:111:0,108:0:0:108:4208:-378.281,-32.5112,0 1/1:138:8,128:8:318:128:5096:-429.528,-12.362,0 dDocent_Contig_5080 22 . G C 95.4088 . AB=0.2;ABP=26.4622;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=79;DPB=79;DPRA=1.72414;EPP=18.2106;EPPR=159.356;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.944444;PAO=0;PQA=0;PQR=0;PRO=0;QA=258;QR=2718;RO=72;RPL=0;RPP=18.2106;RPPR=159.356;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=72;SRP=159.356;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:24,6:24:910:6:218:-10.9388,0,-73.1867 0/0:12:12,0:12:442:0:0:0,-3.61236,-40.121 0/0:20:19,1:19:713:1:40:0,-2.02492,-60.5031 0/0:17:17,0:17:653:0:0:0,-5.11751,-59.1066 dDocent_Contig_5081 49 . G A 287.722 . AB=0.165217;ABP=114.964;AC=3;AF=0.375;AN=8;AO=19;CIGAR=1X;DP=132;DPB=132;DPRA=2.2549;EPP=44.2683;EPPR=248.387;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=752;QR=4395;RO=113;RPL=0;RPP=44.2683;RPPR=248.387;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=113;SRP=248.387;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:17:17,0:17:671:0:0:0,-5.11751,-60.7164 0/1:20:17,3:17:630:3:119:-5.0739,0,-50.9917 0/1:51:42,9:42:1628:9:365:-17.8623,0,-131.407 0/1:44:37,7:37:1466:7:268:-11.2338,0,-118.942 dDocent_Contig_5082 26 . T A 3115.39 . AB=0.504717;ABP=3.05127;AC=4;AF=0.5;AN=8;AO=107;CIGAR=1X;DP=212;DPB=212;DPRA=0;EPP=235.358;EPPR=231.015;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4240;QR=4235;RO=105;RPL=0;RPP=235.358;RPPR=231.015;RPR=107;RUN=1;SAF=107;SAP=235.358;SAR=0;SRF=105;SRP=231.015;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:61:33,28:33:1334:28:1114:-82.1824,0,-101.956 0/1:78:40,38:40:1601:38:1508:-112.481,0,-120.839 0/1:34:16,18:16:652:18:712:-54.1693,0,-48.7775 0/1:39:16,23:16:648:23:906:-70.1042,0,-46.913 dDocent_Contig_5083 118 . T A 268.85 . AB=0.151724;ABP=155.777;AC=1;AF=0.125;AN=8;AO=27;CIGAR=1X;DP=564;DPB=564;DPRA=0;EPP=61.6401;EPPR=1169.09;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=955;QR=19346;RO=537;RPL=0;RPP=61.6401;RPPR=1169.09;RPR=27;RUN=1;SAF=0;SAP=61.6401;SAR=27;SRF=0;SRP=1169.09;SRR=537;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:134:133,1:133:4754:1:8:0,-39.538,-427.187 0/0:191:190,1:190:6888:1:37:0,-53.7989,-616.245 0/1:145:123,22:123:4443:22:799:-28.584,0,-356.37 0/0:94:91,3:91:3261:3:111:0,-17.9429,-283.342 dDocent_Contig_5084 8 . G A 714.636 . AB=0.158576;ABP=315.878;AC=3;AF=0.375;AN=8;AO=52;CIGAR=1X;DP=367;DPB=367;DPRA=0;EPP=115.927;EPPR=687.024;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1983;QR=12005;RO=315;RPL=0;RPP=115.927;RPPR=687.024;RPR=52;RUN=1;SAF=52;SAP=115.927;SAR=0;SRF=315;SRP=687.024;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:128:108,20:108:4127:20:764:-30.5556,0,-332.979 0/1:149:123,26:123:4677:26:987:-44.2859,0,-376.127 0/0:58:55,3:55:2082:3:115:0,-6.73485,-176.887 0/1:32:29,3:29:1119:3:117:-1.27742,0,-91.3792 dDocent_Contig_5085 21 . G A 17317 . AB=0.620994;ABP=118.089;AC=4;AF=0.5;AN=8;AO=562;CIGAR=1X;DP=905;DPB=905;DPRA=0;EPP=1223.38;EPPR=745.654;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=5.55112e-17;PAIRED=0.998221;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=22359;QR=13602;RO=342;RPL=0;RPP=1223.38;RPPR=745.654;RPR=562;RUN=1;SAF=562;SAP=1223.38;SAR=0;SRF=342;SRP=745.654;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:276:73,203:73:2926:203:8043:-640.377,0,-180.349 0/1:265:108,157:108:4305:157:6267:-484.008,0,-307.629 0/1:241:89,152:89:3533:152:6063:-472.906,0,-245.457 0/1:123:72,50:72:2838:50:1986:-141.804,0,-218.398 dDocent_Contig_5086 10 . G A 2230.89 . AB=0.464286;ABP=4.87156;AC=2;AF=0.25;AN=8;AO=90;CIGAR=1X;DP=335;DPB=335;DPRA=0;EPP=198.443;EPPR=535.021;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3553;QR=9716;RO=245;RPL=0;RPP=198.443;RPPR=535.021;RPR=90;RUN=1;SAF=90;SAP=198.443;SAR=0;SRF=245;SRP=535.021;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:94:41,53:41:1630:53:2089:-159.904,0,-118.623 0/0:101:93,8:93:3674:8:318:0,-1.41831,-301.685 0/1:74:49,25:49:1930:25:984:-66.5831,0,-151.622 0/0:66:62,4:62:2482:4:162:0,-4.90102,-208.551 dDocent_Contig_5087 10 . A G 12670.9 . AB=0.581461;ABP=44.0487;AC=4;AF=0.5;AN=8;AO=414;CIGAR=1X;DP=712;DPB=712;DPRA=0;EPP=902;EPPR=650.109;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=16544;QR=11831;RO=298;RPL=0;RPP=902;RPPR=650.109;RPR=414;RUN=1;SAF=414;SAP=902;SAR=0;SRF=298;SRP=650.109;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:163:42,121:42:1678:121:4827:-385.261,0,-102.18 0/1:177:79,98:79:3163:98:3917:-299.238,0,-231.463 0/1:209:100,109:100:3965:109:4389:-332.025,0,-293.942 0/1:163:77,86:77:3025:86:3411:-257.968,0,-223.284 dDocent_Contig_5088 171 . G A 48.4569 . AB=0.128205;ABP=49.8362;AC=2;AF=0.25;AN=8;AO=5;CIGAR=1X;DP=107;DPB=107;DPRA=0.573529;EPP=13.8677;EPPR=224.5;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=203;QR=4100;RO=102;RPL=5;RPP=13.8677;RPPR=224.5;RPR=0;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=224.5;SRR=102;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:51:51,0:51:2067:0:0:0,-15.3525,-186.205 0/1:28:24,4:24:961:4:162:-6.53812,0,-78.3549 0/1:11:10,1:10:405:1:41:-0.783237,0,-33.4989 0/0:17:17,0:17:667:0:0:0,-5.11751,-60.3576 dDocent_Contig_5089 9 . T C 15355.6 . AB=0.81448;ABP=572.535;AC=4;AF=0.5;AN=8;AO=540;CIGAR=1X;DP=663;DPB=663;DPRA=0;EPP=1175.61;EPPR=270.101;GTI=0;LEN=1;MEANALT=1;MQM=43.3444;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=20760;QR=4605;RO=123;RPL=0;RPP=1175.61;RPPR=270.101;RPR=540;RUN=1;SAF=540;SAP=1175.61;SAR=0;SRF=123;SRP=270.101;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:198:31,167:31:1182:167:6442:-480.294,0,-47.0734 0/1:226:53,173:53:2004:173:6642:-487.806,0,-112.564 0/1:130:21,109:21:786:109:4176:-311.442,0,-31.925 0/1:109:18,91:18:633:91:3500:-263.417,0,-24.4701 dDocent_Contig_5090 8 . A G 7624.71 . AB=0.292727;ABP=413.49;AC=4;AF=0.5;AN=8;AO=322;CIGAR=1X;DP=1100;DPB=1100;DPRA=0;EPP=702.224;EPPR=1692.42;GTI=0;LEN=1;MEANALT=1;MQM=59.9783;MQMR=58.7172;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.998715;PAO=0;PQA=0;PQR=0;PRO=0;QA=12226;QR=29505;RO=778;RPL=0;RPP=702.224;RPPR=1692.42;RPR=322;RUN=1;SAF=322;SAP=702.224;SAR=0;SRF=778;SRP=1692.42;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:316:238,78:238:9055:78:2956:-171.091,0,-718.658 0/1:324:254,70:254:9630:70:2654:-141.516,0,-767.138 0/1:230:173,57:173:6543:57:2175:-126.737,0,-518.18 0/1:230:113,117:113:4277:117:4441:-330.525,0,-314.529 dDocent_Contig_5092 180 . T A 40.8834 . AB=0.109375;ABP=87.8334;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=182;DPB=182;DPRA=1.62712;EPP=18.2106;EPPR=380.846;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.9885;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=271;QR=6784;RO=174;RPL=7;RPP=18.2106;RPPR=380.846;RPR=0;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=380.846;SRR=174;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:64:57,7:57:2243:7:271:-5.48624,0,-182.785 0/0:64:64,0:64:2487:0:0:0,-19.2659,-223.994 0/0:33:32,0:32:1239:0:0:0,-9.63296,-111.583 0/0:21:21,0:21:815:0:0:0,-6.32163,-73.6694 dDocent_Contig_5093 42 . G A 556.347 . AB=0.296296;ABP=32.2045;AC=2;AF=0.25;AN=8;AO=27;CIGAR=1X;DP=173;DPB=173;DPRA=0;EPP=61.6401;EPPR=320.045;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1035;QR=5693;RO=146;RPL=0;RPP=61.6401;RPPR=320.045;RPR=27;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=146;SRP=320.045;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:63:43,20:43:1683:20:760:-49.7594,0,-132.742 0/0:61:59,2:59:2282:2:78:0,-10.9595,-198.157 0/0:31:30,1:30:1185:1:38:0,-5.53466,-103.134 0/1:18:14,4:14:543:4:159:-9.27321,0,-43.7923 dDocent_Contig_5094 33 . C T 3202.67 . AB=0.297921;ABP=156.593;AC=4;AF=0.5;AN=8;AO=129;CIGAR=1X;DP=433;DPB=433;DPRA=0;EPP=283.13;EPPR=663.138;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5077;QR=12076;RO=304;RPL=0;RPP=283.13;RPPR=663.138;RPR=129;RUN=1;SAF=129;SAP=283.13;SAR=0;SRF=304;SRP=663.138;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:99:74,25:74:2942:25:984:-59.0613,0,-235.084 0/1:129:76,53:76:3006:53:2113:-151.522,0,-231.806 0/1:127:87,40:87:3445:40:1552:-101.69,0,-271.872 0/1:78:67,11:67:2683:11:428:-15.3919,0,-218.111 dDocent_Contig_5095 8 . G A 1514.68 . AB=0.258555;ABP=136.18;AC=3;AF=0.375;AN=8;AO=76;CIGAR=1X;DP=364;DPB=364;DPRA=0;EPP=168.042;EPPR=628.394;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2898;QR=11005;RO=288;RPL=0;RPP=168.042;RPPR=628.394;RPR=76;RUN=1;SAF=76;SAP=168.042;SAR=0;SRF=288;SRP=628.394;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:120:77,43:77:2962:43:1658:-113.359,0,-230.623 0/0:101:93,8:93:3531:8:286:0,-4.322,-291.841 0/1:86:67,19:67:2565:19:730:-40.1426,0,-205.16 0/1:57:51,6:51:1947:6:224:-3.36005,0,-158.315 dDocent_Contig_5096 11 . T A 3284.59 . AB=0.210738;ABP=544.453;AC=4;AF=0.5;AN=8;AO=157;CIGAR=1X;DP=745;DPB=745;DPRA=0;EPP=343.931;EPPR=1279.84;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.299363;PAIREDR=0.969388;PAO=0;PQA=0;PQR=0;PRO=0;QA=6213;QR=23263;RO=588;RPL=0;RPP=343.931;RPPR=1279.84;RPR=157;RUN=1;SAF=157;SAP=343.931;SAR=0;SRF=588;SRP=1279.84;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:184:147,37:147:5828:37:1457:-75.9905,0,-468.943 0/1:237:187,50:187:7433:50:1985:-107.497,0,-597.266 0/1:215:167,48:167:6555:48:1888:-105.404,0,-524.965 0/1:109:87,22:87:3447:22:883:-46.9654,0,-277.468 dDocent_Contig_5097 34 . A T 104.502 . AB=0.153846;ABP=57.1301;AC=1;AF=0.125;AN=8;AO=15;CIGAR=1X;DP=242;DPB=242;DPRA=0;EPP=35.5824;EPPR=495.935;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=577;QR=8937;RO=227;RPL=0;RPP=35.5824;RPPR=495.935;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=227;SRP=495.935;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:60:57,3:57:2218:3:120:0,-6.87411,-188.606 0/0:94:91,3:91:3566:3:114:0,-17.6667,-310.352 0/1:52:44,8:44:1751:8:305:-12.1492,0,-142.158 0/0:36:35,1:35:1402:1:38:0,-7.03981,-122.639 dDocent_Contig_5098 12 . C T 92.7373 . AB=0.14;ABP=59.2949;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=127;DPB=127;DPRA=1.94805;EPP=18.2106;EPPR=263.587;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.908333;PAO=0;PQA=0;PQR=0;PRO=0;QA=285;QR=4826;RO=120;RPL=0;RPP=18.2106;RPPR=263.587;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=120;SRP=263.587;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:27:27,0:27:1081:0:0:0,-8.12781,-97.5731 0/1:50:43,7:43:1729:7:285:-10.9727,0,-140.774 0/0:23:23,0:23:921:0:0:0,-6.92369,-83.1929 0/0:27:27,0:27:1095:0:0:0,-8.12781,-98.8339 dDocent_Contig_5099 98 . N C 157.594 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=6;CIGAR=1X;DP=6;DPB=6;DPRA=0;EPP=16.0391;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=167;QR=0;RO=0;RPL=6;RPP=16.0391;RPPR=0;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:1:0,1:0:0:1:7:-0.699998,-0.30103,0 1/1:5:0,5:0:0:5:160:-14.716,-1.50515,0 ./.:.:.:.:.:.:.:. dDocent_Contig_5100 34 . G T 329.377 . AB=0.147436;ABP=171.439;AC=1;AF=0.125;AN=8;AO=26;CIGAR=1X;DP=349;DPB=349;DPRA=1.20886;EPP=59.4686;EPPR=661.639;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=58.9474;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.941176;PAO=0;PQA=0;PQR=0;PRO=0;QA=1004;QR=12735;RO=323;RPL=0;RPP=59.4686;RPPR=704.396;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=318;SRP=661.639;SRR=5;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:156:133,23:133:5301:23:900:-34.3355,0,-427.61 0/0:83:83,0:83:3244:0:0:0,-24.9855,-289.62 0/0:75:75,0:75:2941:0:0:0,-22.5772,-262.335 0/0:35:32,3:32:1249:3:104:0,-0.835666,-102.423 dDocent_Contig_5101 13 . C G 1263.66 . AB=0.153551;ABP=546.174;AC=3;AF=0.375;AN=8;AO=91;CIGAR=1X;DP=673;DPB=673;DPRA=0;EPP=200.614;EPPR=1258.14;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.994845;PAO=0;PQA=0;PQR=0;PRO=0;QA=3622;QR=23117;RO=582;RPL=0;RPP=200.614;RPPR=1266.81;RPR=91;RUN=1;SAF=91;SAP=200.614;SAR=0;SRF=581;SRP=1258.14;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:235:182,53:182:7269:53:2113:-119.606,0,-583.111 0/1:142:127,15:127:5068:15:584:-10.147,0,-413.249 0/0:152:141,11:141:5578:11:436:0,-6.16414,-462.25 0/1:144:132,12:132:5202:12:489:-1.01299,0,-424.716 dDocent_Contig_5103 43 . G A 826.356 . AB=0.375887;ABP=21.8759;AC=4;AF=0.5;AN=8;AO=53;CIGAR=1X;DP=141;DPB=141;DPRA=0;EPP=118.098;EPPR=194.1;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1460;QR=2644;RO=88;RPL=0;RPP=118.098;RPPR=194.1;RPR=53;RUN=1;SAF=53;SAP=118.098;SAR=0;SRF=88;SRP=194.1;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:33:19,14:19:575:14:382:-24.7136,0,-42.1084 0/1:29:19,10:19:595:10:257:-14.6546,0,-45.1193 0/1:35:23,12:23:701:12:356:-21.7947,0,-52.8446 0/1:44:27,17:27:773:17:465:-28.8706,0,-56.5963 dDocent_Contig_5104 10 . C A 204.978 . AB=0.243243;ABP=24.1968;AC=1;AF=0.125;AN=8;AO=13;CIGAR=1X;DP=178;DPB=178;DPRA=0.786164;EPP=31.2394;EPPR=361.303;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=527;QR=6598;RO=165;RPL=0;RPP=31.2394;RPPR=361.303;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=165;SRP=361.303;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:37:28,9:28:1140:9:363:-21.8957,0,-91.739 0/0:43:40,3:40:1590:3:123:0,-1.4795,-131.868 0/0:53:53,0:53:2143:0:0:0,-15.9546,-193.041 0/0:45:44,1:44:1725:1:41:0,-9.45178,-151.369 dDocent_Contig_5106 76 . A G 43.9178 . AB=0.25;ABP=9.52472;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=105;DPB=105;DPRA=0.909091;EPP=11.6962;EPPR=222.329;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=139;QR=3412;RO=101;RPL=4;RPP=11.6962;RPPR=222.329;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=101;SRP=222.329;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:27:27,0:27:913:0:0:0,-8.12781,-82.4795 0/0:38:37,1:37:1254:1:35:0,-7.94051,-109.66 0/0:28:28,0:28:957:0:0:0,-8.42884,-86.4414 0/1:12:9,3:9:288:3:104:-6.09073,0,-22.619 dDocent_Contig_5108 37 . A G 147.438 . AB=0.177419;ABP=59.0483;AC=3;AF=0.375;AN=8;AO=11;CIGAR=1X;DP=114;DPB=114;DPRA=0.397436;EPP=26.8965;EPPR=224.5;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.909091;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=418;QR=4031;RO=102;RPL=0;RPP=26.8965;RPPR=224.5;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=102;SRP=224.5;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:52:51,0:51:2018:0:0:0,-15.3525,-181.726 0/1:29:26,3:26:1007:3:118:-2.27285,0,-82.19 0/1:14:12,2:12:482:2:81:-3.47131,0,-39.517 0/1:19:13,6:13:524:6:219:-14.34,0,-41.7868 dDocent_Contig_5109 65 . G A 1321.69 . AB=0.363636;ABP=27.8835;AC=4;AF=0.5;AN=8;AO=56;CIGAR=1X;DP=154;DPB=154;DPRA=0;EPP=124.613;EPPR=215.815;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2051;QR=3593;RO=98;RPL=56;RPP=124.613;RPPR=215.815;RPR=0;RUN=1;SAF=56;SAP=124.613;SAR=0;SRF=98;SRP=215.815;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:45:29,16:29:1072:16:588:-39.7001,0,-83.2281 0/1:47:26,21:26:927:21:747:-53.3874,0,-69.5766 0/1:43:29,14:29:1059:14:528:-34.9159,0,-82.6595 0/1:19:14,5:14:535:5:188:-11.5632,0,-42.7747 dDocent_Contig_5110 125 . A T 161.533 . AB=0.131148;ABP=291.353;AC=2;AF=0.25;AN=8;AO=34;CIGAR=1X;DP=372;DPB=372;DPRA=2.00629;EPP=76.8404;EPPR=734.797;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1093;QR=10875;RO=337;RPL=0;RPP=76.8404;RPPR=734.797;RPR=34;RUN=1;SAF=0;SAP=76.8404;SAR=34;SRF=0;SRP=734.797;SRR=337;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:151:130,20:130:4259:20:617:-10.3182,0,-338.017 0/1:93:81,12:81:2627:12:410:-9.23307,0,-208.684 0/0:75:73,2:73:2273:2:66:0,-16.3091,-198.555 0/0:53:53,0:53:1716:0:0:0,-15.9546,-154.717 dDocent_Contig_5111 7 . A T 473.473 . AB=0.12532;ABP=479.785;AC=3;AF=0.375;AN=8;AO=51;CIGAR=1X;DP=436;DPB=436;DPRA=0;EPP=113.755;EPPR=839.027;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=57.7039;NS=4;NUMALT=1;ODDS=2.77556e-17;PAIRED=0;PAIREDR=0.885714;PAO=0;PQA=0;PQR=0;PRO=0;QA=1958;QR=14675;RO=385;RPL=0;RPP=113.755;RPPR=839.027;RPR=51;RUN=1;SAF=51;SAP=113.755;SAR=0;SRF=385;SRP=839.027;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:178:162,16:162:6155:16:612:-1.83477,0,-497.716 0/1:127:105,22:105:3988:22:841:-37.7802,0,-319.113 0/1:86:75,11:75:2876:11:427:-12.8965,0,-232.591 0/0:45:43,2:43:1656:2:78:0,-6.14288,-141.555 dDocent_Contig_5112 127 . T G 1343.74 . AB=0.175824;ABP=833.658;AC=3;AF=0.375;AN=8;AO=181;CIGAR=1X;DP=1123;DPB=1123;DPRA=0;EPP=396.047;EPPR=2044.19;GTI=0;LEN=1;MEANALT=1.5;MQM=30.7017;MQMR=59.9617;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.998936;PAO=0;PQA=0;PQR=0;PRO=0;QA=6574;QR=33641;RO=940;RPL=0;RPP=396.047;RPPR=2044.19;RPR=181;RUN=1;SAF=0;SAP=396.047;SAR=181;SRF=0;SRP=2044.19;SRR=940;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:338:280,58:280:9991:58:2103:-59.7225,0,-797.338 0/1:368:290,77:290:10471:77:2782:-71.2809,0,-831.494 0/0:213:192,21:192:6874:21:770:0,-11.7937,-566.372 0/1:204:178,25:178:6305:25:919:-8.76904,0,-506.189 dDocent_Contig_5113 8 . G A 8696.12 . AB=0.474308;ABP=7.36183;AC=4;AF=0.5;AN=8;AO=360;CIGAR=1X;DP=759;DPB=759;DPRA=0;EPP=784.74;EPPR=832.513;GTI=0;LEN=1;MEANALT=1.5;MQM=48.5583;MQMR=55.1021;NS=4;NUMALT=1;ODDS=0;PAIRED=0.222222;PAIREDR=0.641361;PAO=0;PQA=0;PQR=0;PRO=0;QA=13761;QR=14645;RO=382;RPL=0;RPP=784.74;RPPR=832.513;RPR=360;RUN=1;SAF=360;SAP=784.74;SAR=0;SRF=382;SRP=832.513;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:308:165,131:165:6316:131:4997:-305.419,0,-435.122 0/1:210:79,131:79:3030:131:5031:-338.365,0,-203.229 0/1:150:80,65:80:3070:65:2470:-158.088,0,-210.652 0/1:91:58,33:58:2229:33:1263:-75.1376,0,-168.085 dDocent_Contig_5114 13 . T C 2853.81 . AB=0.274262;ABP=212.809;AC=3;AF=0.375;AN=8;AO=135;CIGAR=1X;DP=546;DPB=546;DPRA=0;EPP=296.159;EPPR=895.485;GTI=0;LEN=1;MEANALT=1;MQM=39.8148;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5458;QR=15647;RO=411;RPL=0;RPP=296.159;RPPR=895.485;RPR=135;RUN=1;SAF=135;SAP=296.159;SAR=0;SRF=411;SRP=895.485;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:187:137,50:137:5185:50:2024:-111.44,0,-410.333 0/1:112:54,58:54:2060:58:2333:-157.685,0,-151.909 0/0:72:67,5:67:2589:5:204:0,-4.48537,-216.004 0/1:175:153,22:153:5813:22:897:-21.6544,0,-470.431 dDocent_Contig_5115 107 . N G 117.443 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=7.37776;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=127;QR=0;RO=0;RPL=0;RPP=11.6962;RPPR=0;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:4:0,4:0:0:4:127:-11.7441,-1.20412,0 dDocent_Contig_5116 24 . C G 848.957 . AB=0.15;ABP=386.058;AC=2;AF=0.25;AN=8;AO=65;CIGAR=1X;DP=713;DPB=713;DPRA=0;EPP=144.156;EPPR=1407.95;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2624;QR=25956;RO=647;RPL=0;RPP=144.156;RPPR=1407.95;RPR=65;RUN=1;SAF=65;SAP=144.156;SAR=0;SRF=647;SRP=1407.95;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:217:175,41:175:7064:41:1652:-83.4743,0,-569.949 0/0:208:201,7:201:8039:7:285:0,-36.5898,-697.023 0/1:143:130,13:130:5182:13:528:-4.81923,0,-423.184 0/0:145:141,4:141:5671:4:159:0,-28.9579,-495.493 dDocent_Contig_5117 15 . T C 331.675 . AB=0.125506;ABP=303.895;AC=2;AF=0.25;AN=8;AO=40;CIGAR=1X;DP=451;DPB=451;DPRA=0;EPP=89.8692;EPPR=895.485;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1571;QR=16564;RO=411;RPL=0;RPP=89.8692;RPPR=895.485;RPR=40;RUN=1;SAF=40;SAP=89.8692;SAR=0;SRF=411;SRP=895.485;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:146:124,22:124:5014:22:869:-34.5634,0,-407.165 0/0:128:121,7:121:4876:7:283:0,-12.6885,-412.878 0/1:101:92,9:92:3718:9:337:-0.267263,0,-304.211 0/0:76:74,2:74:2956:2:82:0,-15.0986,-258.343 dDocent_Contig_5118 143 . T A 202.014 . AB=0.5;ABP=3.0103;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=110;DPB=110;DPRA=0.4375;EPP=18.2106;EPPR=226.672;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=55.4854;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.854369;PAO=0;PQA=0;PQR=0;PRO=0;QA=286;QR=4005;RO=103;RPL=0;RPP=18.2106;RPPR=226.672;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=226.672;SRR=103;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:54:54,0:54:2088:0:0:0,-16.2556,-174.932 0/0:34:34,0:34:1330:0:0:0,-10.235,-117.824 0/0:8:8,0:8:303:0:0:0,-2.40824,-27.0616 0/1:14:7,7:7:284:7:286:-21.9004,0,-21.7196 dDocent_Contig_5119 8 . G A 56.7098 . AB=0.115385;ABP=36.4176;AC=0;AF=0;AN=8;AO=3;CIGAR=2X2M1X3M;DP=90;DPB=90;DPRA=2;EPP=9.52472;EPPR=157.185;GTI=0;LEN=1;MEANALT=2;MQM=24;MQMR=60;NS=4;NUMALT=5;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=72;QR=2756;RO=71;RPL=0;RPP=9.52472;RPPR=157.185;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=71;SRP=157.185;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:26:17,0,0,0,3,6:17:662:0,0,0,3,6:0,0,0,72,171:-7.05945,-12.177,-66.6802,-12.177,-66.6802,-66.6802,-12.177,-66.6802,-66.6802,-66.6802,-7.42661,-61.9305,-61.9305,-61.9305,-61.0274,0,-54.5594,-54.5594,-54.5594,-49.8198,-52.7533 0|0:31:27,0,0,3,0,0:27:1049:0,0,3,0,0:0,0,114,0,0:-0.409769,-8.53758,-94.7666,-8.53758,-94.7666,-94.7666,0,-86.2259,-86.2259,-85.3228,-8.53758,-94.7666,-94.7666,-86.2259,-94.7666,-8.53758,-94.7666,-94.7666,-86.2259,-94.7666,-94.7666 0|0:20:17,0,2,0,0,0:17:664:0,2,0,0,0:0,75,0,0,0:-0.760206,-5.87772,-60.487,0,-54.6042,-54.0021,-5.87772,-60.487,-54.6042,-60.487,-5.87772,-60.487,-54.6042,-60.487,-60.487,-5.87772,-60.487,-54.6042,-60.487,-60.487,-60.487 0|0:13:10,2,0,0,0,0:10:381:2,0,0,0,0:44,0,0,0,0:0,-0.313293,-30.9682,-3.0103,-31.5703,-34.3596,-3.0103,-31.5703,-34.3596,-34.3596,-3.0103,-31.5703,-34.3596,-34.3596,-34.3596,-3.0103,-31.5703,-34.3596,-34.3596,-34.3596,-34.3596 dDocent_Contig_5121 153 . T C 154.146 . AB=0.25;ABP=20.3821;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=70;DPB=70;DPRA=2.52632;EPP=20.3821;EPPR=137.642;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=290;QR=2309;RO=62;RPL=0;RPP=20.3821;RPPR=137.642;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=137.642;SRR=62;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:32:24,8:24:889:8:290:-16.8125,0,-70.6906 0/0:17:17,0:17:638:0:0:0,-5.11751,-57.7501 0/0:11:11,0:11:418:0:0:0,-3.31133,-37.9685 0/0:10:10,0:10:364:0:0:0,-3.0103,-33.1009 dDocent_Contig_5122 13 . G A 6736.18 . AB=0.672897;ABP=86.3583;AC=4;AF=0.5;AN=8;AO=216;CIGAR=1X;DP=321;DPB=321;DPRA=0;EPP=472.048;EPPR=231.015;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=8633;QR=4219;RO=105;RPL=0;RPP=472.048;RPPR=231.015;RPR=216;RUN=1;SAF=216;SAP=472.048;SAR=0;SRF=105;SRP=231.015;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:109:33,76:33:1326:76:3073:-243.825,0,-86.7872 0/1:80:32,48:32:1304:48:1929:-149.719,0,-93.5361 0/1:92:26,66:26:1026:66:2603:-206.703,0,-64.9336 0/1:40:14,26:14:563:26:1028:-80.7689,0,-38.9719 dDocent_Contig_5123 7 . A G 2288.53 . AB=0.0540541;ABP=130.834;AC=0;AF=0;AN=8;AO=4;CIGAR=1X3M1X1M;DP=324;DPB=324;DPRA=0;EPP=11.6962;EPPR=467.705;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=140;QR=8250;RO=214;RPL=0;RPP=11.6962;RPPR=467.705;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=214;SRP=467.705;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:74:59,4,0,11:59:2265:4,0,11:140,0,450:-19.4182,-25.8054,-210.502,-37.179,-211.706,-223.093,0,-174.566,-185.953,-182.642 0|0:61:40,0,6,14:40:1554:0,6,14:0,241,563:-34.3621,-46.4033,-174.089,-26.543,-154.229,-152.422,0,-127.689,-107.828,-123.474 0|0:127:71,0,4,52:71:2730:0,4,52:0,157,2075:-149.505,-170.878,-394.985,-157.966,-382.073,-380.869,0,-224.108,-211.195,-208.454 0|0:62:44,0,4,14:44:1701:0,4,14:0,163,561:-32.9662,-46.2116,-185.914,-32.7627,-172.466,-171.261,0,-139.694,-126.245,-135.48 dDocent_Contig_5124 82 . G A 71.9995 . AB=0.153846;ABP=43.6001;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=141;DPB=141;DPRA=1.14706;EPP=16.0391;EPPR=296.159;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.2296;NS=4;NUMALT=1;ODDS=0;PAIRED=0.5;PAIREDR=0.918519;PAO=0;PQA=0;PQR=0;PRO=0;QA=222;QR=4844;RO=135;RPL=6;RPP=16.0391;RPPR=296.159;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=135;SRP=296.159;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:39:33,6:33:1163:6:222:-8.59789,0,-93.2311 0/0:38:38,0:38:1379:0:0:0,-11.4391,-122.177 0/0:31:31,0:31:1110:0:0:0,-9.33193,-100.206 0/0:33:33,0:33:1192:0:0:0,-9.93399,-107.585 dDocent_Contig_5125 66 . C A 1060.35 . AB=0.354839;ABP=25.7057;AC=4;AF=0.5;AN=8;AO=44;CIGAR=1X;DP=124;DPB=124;DPRA=0;EPP=98.5551;EPPR=176.728;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.977273;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1660;QR=3034;RO=80;RPL=44;RPP=98.5551;RPPR=176.728;RPR=0;RUN=1;SAF=44;SAP=98.5551;SAR=0;SRF=80;SRP=176.728;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:16,6:16:609:6:214:-12.9831,0,-48.5252 0/1:48:36,12:36:1352:12:468:-28.0231,0,-107.508 0/1:43:22,21:22:846:21:806:-59.9212,0,-63.5177 0/1:11:6,5:6:227:5:172:-12.5054,0,-17.4806 dDocent_Contig_5126 73 . T C 212.3 . AB=0.3125;ABP=12.7819;AC=1;AF=0.125;AN=8;AO=12;CIGAR=1X;DP=104;DPB=104;DPRA=3.72727;EPP=29.068;EPPR=202.786;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.583333;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=432;QR=3308;RO=92;RPL=12;RPP=29.068;RPPR=202.786;RPR=0;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=92;SRP=202.786;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:50:48,2:48:1722:2:74:0,-8.02562,-148.232 0/1:32:22,10:22:790:10:358:-22.929,0,-61.7887 0/0:10:10,0:10:357:0:0:0,-3.0103,-32.4716 0/0:12:12,0:12:439:0:0:0,-3.61236,-39.8539 dDocent_Contig_5127 28 . T C 1670.52 . AB=0.222535;ABP=240.398;AC=2;AF=0.25;AN=8;AO=80;CIGAR=1X;DP=546;DPB=546;DPRA=1.27729;EPP=176.728;EPPR=1014.92;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.997854;PAO=0;PQA=0;PQR=0;PRO=0;QA=3117;QR=17963;RO=466;RPL=0;RPP=176.728;RPPR=1014.92;RPR=80;RUN=1;SAF=80;SAP=176.728;SAR=0;SRF=466;SRP=1014.92;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:231:178,53:178:6893:53:2049:-115.056,0,-550.598 0/1:124:98,26:98:3738:26:1027:-55.394,0,-299.144 0/0:113:113,0:113:4365:0:0:0,-34.0164,-392.857 0/0:78:77,1:77:2967:1:41:0,-19.3858,-263.078 dDocent_Contig_5128 34 . G A 80.091 . AB=0.134615;ABP=63.3104;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1M4I1M1X1M;DP=178;DPB=185.75;DPRA=1.25316;EPP=22.5536;EPPR=352.617;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.944099;PAO=0;PQA=0;PQR=0;PRO=0;QA=354;QR=6225;RO=161;RPL=0;RPP=22.5536;RPPR=352.617;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=161;SRP=352.617;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:36:35,0,0:35:1374:0,0:0,0:0,-10.536,-123.583,-10.536,-123.583,-123.583 0|1:52:43,7,0:43:1680:7,0:275,0:-9.70807,0,-136.043,-22.6524,-138.151,-160.77 0|0:47:43,2,2:43:1658:2,2:79,71:0,-6.42343,-141.986,-7.17948,-136.805,-142.704 0|0:43:40,0,3:40:1513:0,3:0,105:0,-12.0412,-136.075,-3.15349,-127.539,-126.635 dDocent_Contig_5131 8 . G A 1245.15 . AB=0.333333;ABP=39.9253;AC=4;AF=0.5;AN=8;AO=51;CIGAR=1X;DP=153;DPB=153;DPRA=0;EPP=89.2305;EPPR=199.209;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=0.882353;PAIREDR=0.941176;PAO=0;PQA=0;PQR=0;PRO=0;QA=1962;QR=3924;RO=102;RPL=0;RPP=113.755;RPPR=224.5;RPR=51;RUN=1;SAF=48;SAP=89.2305;SAR=3;SRF=99;SRP=199.209;SRR=3;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:17,14:17:656:14:530:-38.7108,0,-50.0435 0/1:43:29,14:29:1118:14:548:-36.7209,0,-87.9774 0/1:37:25,12:25:952:12:466:-31.1541,0,-74.8546 0/1:42:31,11:31:1198:11:418:-25.3272,0,-95.4726 dDocent_Contig_5132 70 . A C 104.224 . AB=0.227273;ABP=17.2236;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=305;DPB=305;DPRA=1.03333;EPP=18.2106;EPPR=650.109;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=283;QR=11703;RO=298;RPL=7;RPP=18.2106;RPPR=650.109;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=298;SRP=650.109;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:109:109,0:109:4306:0:0:0,-32.8123,-387.516 0/0:133:131,2:131:5108:2:79:0,-32.5397,-452.113 0/0:41:41,0:41:1614:0:0:0,-12.3422,-145.487 0/1:22:17,5:17:675:5:204:-12.1214,0,-54.4574 dDocent_Contig_5133 50 . C T 59.2542 . AB=0.103774;ABP=147.557;AC=1;AF=0.125;AN=8;AO=11;CIGAR=1X;DP=238;DPB=238;DPRA=2.40909;EPP=26.8965;EPPR=495.935;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=432;QR=9072;RO=227;RPL=11;RPP=26.8965;RPPR=495.935;RPR=0;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=227;SRP=495.935;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:106:95,11:95:3796:11:432:-7.32336,0,-309.731 0/0:86:86,0:86:3431:0:0:0,-25.8886,-308.826 0/0:35:35,0:35:1397:0:0:0,-10.536,-125.983 0/0:11:11,0:11:448:0:0:0,-3.31133,-40.676 dDocent_Contig_5135 11 . A T 2855.78 . AB=0.0508475;ABP=313.163;AC=0;AF=0;AN=8;AO=9;CIGAR=2M1X1M;DP=205;DPB=205;DPRA=0;EPP=22.5536;EPPR=122.441;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=4;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=0.872727;PAO=0;PQA=0;PQR=0;PRO=0;QA=365;QR=2144;RO=55;RPL=0;RPP=22.5536;RPPR=122.441;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:88:18,36,4,6,24:18:709:36,4,6,24:1399,141,242,967:-130.911,-21.3776,-68.8688,-124.851,-68.229,-181.976,-116.38,-59.757,-163.232,-172.904,-56.6239,0,-103.477,-95.0057,-107.73 0|0:49:13,5,3,1,27:13:517:5,3,1,27:197,115,41,1069:-84.0659,-71.7718,-112.836,-78.5415,-104.903,-120.207,-84.5948,-110.957,-117.726,-126.863,0,-26.3644,-33.1348,-39.1869,-34.4438 0|0:40:13,9,1,2,15:13:491:9,1,2,15:356,39,82,600:-45.5114,-20.1284,-57.6453,-46.2192,-57.1487,-86.1468,-42.6557,-53.5851,-79.6787,-82.2825,0,-10.9228,-37.0195,-33.4554,-35.7101 0|0:28:11,11,3,0,3:11:427:11,3,0,3:435,115,0,122:-32.4884,0,-31.7692,-26.3635,-25.6433,-60.5411,-35.7997,-35.0805,-61.4442,-70.8818,-25.7341,-25.0139,-51.3791,-60.8169,-59.9138 dDocent_Contig_5137 21 . T C 12087.9 . AB=0.721905;ABP=227.557;AC=4;AF=0.5;AN=8;AO=379;CIGAR=1X4M;DP=525;DPB=525;DPRA=0;EPP=825.998;EPPR=276.616;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=15211;QR=4932;RO=126;RPL=0;RPP=825.998;RPPR=276.616;RPR=379;RUN=1;SAF=379;SAP=825.998;SAR=0;SRF=126;SRP=276.616;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:160:44,2,114:44:1724:2,114:76,4580:-364.169,-371.181,-512.342,0,-135.545,-107.46 0|1:216:29,16,169:29:1146:16,169:619,6782:-550.069,-507.954,-597.442,0,-43.4653,-43.4346 0|1:84:30,0,54:30:1176:0,54:0,2164:-169.651,-178.682,-275.382,0,-97.0939,-80.8383 0|1:65:23,0,42:23:886:0,42:0,1685:-132.3,-139.224,-211.961,0,-73.1281,-60.4848 dDocent_Contig_5138 15 . T C 11083.8 . AB=0.661682;ABP=124.487;AC=4;AF=0.5;AN=8;AO=354;CIGAR=1X;DP=535;DPB=535;DPRA=0;EPP=771.712;EPPR=396.047;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.997175;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=14186;QR=7294;RO=181;RPL=0;RPP=771.712;RPPR=396.047;RPR=354;RUN=1;SAF=354;SAP=771.712;SAR=0;SRF=181;SRP=396.047;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:146:54,92:54:2186:92:3694:-288.518,0,-152.95 0/1:160:61,99:61:2468:99:3978:-309.834,0,-174.083 0/1:137:43,94:43:1721:94:3765:-297.613,0,-113.869 0/1:92:23,69:23:919:69:2749:-219.814,0,-55.3184 dDocent_Contig_5139 66 . T A 339.479 . AB=0.264706;ABP=35.7101;AC=1;AF=0.125;AN=8;AO=21;CIGAR=1X;DP=313;DPB=313;DPRA=0.664894;EPP=48.6112;EPPR=637.08;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=728;QR=10897;RO=292;RPL=21;RPP=48.6112;RPPR=637.08;RPR=0;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=292;SRP=637.08;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:88:88,0:88:3318:0:0:0,-26.4906,-298.766 0/0:100:100,0:100:3693:0:0:0,-30.103,-332.492 0/1:68:50,18:50:1860:18:620:-35.6468,0,-147.182 0/0:57:54,3:54:2026:3:108:0,-7.08362,-172.508 dDocent_Contig_5140 1 . N G 118.901 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=120;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:80:-7.59179,-0.60206,0 1/1:1:0,1:0:0:1:40:-3.99568,-0.30103,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_5141 13 . A G 701.497 . AB=0.144578;ABP=367.294;AC=2;AF=0.25;AN=8;AO=65;CIGAR=1X;DP=685;DPB=685;DPRA=0;EPP=144.156;EPPR=1347.15;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.984615;PAIREDR=0.998384;PAO=0;PQA=0;PQR=0;PRO=0;QA=2608;QR=24791;RO=619;RPL=0;RPP=144.156;RPPR=1347.15;RPR=65;RUN=1;SAF=65;SAP=144.156;SAR=0;SRF=619;SRP=1347.15;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:201:187,14:187:7512:14:567:0,-9.13564,-624.307 0/1:171:152,19:152:6079:19:760:-17.2456,0,-495.39 0/0:152:148,3:148:5943:3:120:0,-34.6376,-523.462 0/1:161:132,29:132:5257:29:1161:-56.302,0,-424.509 dDocent_Contig_5142 14 . T C 8797.05 . AB=0.346509;ABP=158.329;AC=6;AF=0.75;AN=8;AO=263;CIGAR=1X4M;DP=759;DPB=760.2;DPRA=0;EPP=574.108;EPPR=519.821;GTI=0;LEN=1;MEANALT=3.75;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=10564;QR=9007;RO=238;RPL=0;RPP=574.108;RPPR=519.821;RPR=263;RUN=1;SAF=263;SAP=574.108;SAR=0;SRF=238;SRP=519.821;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:315:105,57,9,137:105:3990:57,9,137:2237,338,5506:-422.115,-269.753,-579.802,-427.416,-570.653,-751.915,0,-143.234,-300.902,-285.969 1|1:211:60,64,11,75:60:2268:64,11,75:2443,404,3016:-245.005,-62.6579,-229.289,-231.914,-217.402,-414.502,-14.5136,0,-169.265,-177.841 0|1:119:43,39,15,22:43:1615:39,15,22:1510,552,894:-111.087,0,-120.554,-81.1327,-89.3931,-208.908,-50.2872,-58.5478,-139.682,-175.962 1|1:114:30,36,17,29:30:1134:36,17,29:1415,620,1148:-108.892,-1.5303,-83.6463,-69.4473,-46.0066,-157.279,-23.4442,0,-67.9198,-107.667 dDocent_Contig_5143 37 . T A 13611 . AB=0.0350109;ABP=861.265;AC=5;AF=0.625;AN=8;AO=16;CIGAR=1X3M1X;DP=582;DPB=582;DPRA=1.21867;EPP=37.7539;EPPR=274.444;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=630;QR=4727;RO=125;RPL=0;RPP=37.7539;RPPR=274.444;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=125;SRP=274.444;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:175:43,121,11:43:1630:121,11:4749,432:-377.612,0,-97.2048,-355.026,-98.0963,-485.352 0|1:145:37,102,4:37:1399:102,4:3950,160:-313.298,0,-83.9533,-311.255,-101.476,-424.726 1|1:125:10,115,0:10:373:115,0:4501,0:-371.169,-3.71022,0,-374.18,-34.6185,-404.714 0|1:137:35,97,1:35:1325:97,1:3828,38:-304.424,0,-79.3987,-311.843,-105.482,-420.157 dDocent_Contig_5144 24 . T G 92.3656 . AB=0.113402;ABP=128.933;AC=1;AF=0.125;AN=8;AO=19;CIGAR=1X;DP=325;DPB=325;DPRA=0;EPP=44.2683;EPPR=667.481;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=741;QR=12129;RO=306;RPL=0;RPP=44.2683;RPPR=667.481;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=306;SRP=667.481;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:95:94,1:94:3759:1:40:0,-24.6022,-334.315 0/0:98:92,6:92:3667:6:220:0,-9.353,-309.893 0/1:97:86,11:86:3339:11:442:-10.9355,0,-271.36 0/0:35:34,1:34:1364:1:39:0,-6.63949,-119.12 dDocent_Contig_5145 38 . C A 2226.77 . AB=0.585938;ABP=11.2212;AC=4;AF=0.5;AN=8;AO=75;CIGAR=1M1I3M1X;DP=128;DPB=143.4;DPRA=0;EPP=165.871;EPPR=115.927;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=0.973333;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2964;QR=2020;RO=52;RPL=0;RPP=165.871;RPPR=115.927;RPR=75;RUN=1;SAF=75;SAP=165.871;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:41:9,31:9:352:31:1226:-98.1811,0,-19.5962 0|1:50:14,36:14:542:36:1420:-113.01,0,-34.07 0|1:17:11,6:11:424:6:240:-16.8581,0,-33.3927 0|1:20:18,2:18:702:2:78:-1.3827,0,-57.4847 dDocent_Contig_5146 94 . C A 5334.82 . AB=0.559367;ABP=14.6125;AC=4;AF=0.5;AN=8;AO=212;CIGAR=1X;DP=379;DPB=379;DPRA=0;EPP=463.362;EPPR=365.646;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7265;QR=5761;RO=167;RPL=212;RPP=463.362;RPPR=365.646;RPR=0;RUN=1;SAF=212;SAP=463.362;SAR=0;SRF=167;SRP=365.646;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:161:70,91:70:2411:91:3161:-236.259,0,-168.79 0/1:103:50,53:50:1740:53:1786:-130.011,0,-125.882 0/1:69:24,45:24:825:45:1527:-116.95,0,-53.7962 0/1:46:23,23:23:785:23:791:-57.6599,0,-57.1189 dDocent_Contig_5147 12 . T A 2075.07 . AB=0.311284;ABP=82.5098;AC=4;AF=0.5;AN=8;AO=80;CIGAR=3M1X2M;DP=257;DPB=256;DPRA=0;EPP=176.728;EPPR=346.103;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3187;QR=6165;RO=158;RPL=0;RPP=176.728;RPPR=346.103;RPR=80;RUN=1;SAF=80;SAP=176.728;SAR=0;SRF=158;SRP=346.103;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:78:50,0,26,2:50:1954:0,26,2:0,1027,82:-69.4369,-84.4884,-245.125,0,-160.622,-152.795,-77.7192,-238.357,-153.853,-237.755 0|1:52:41,4,6,0:41:1608:4,6,0:161,242,0:-7.62418,-8.23888,-139.265,0,-120.519,-130.454,-19.9664,-140.469,-132.26,-152.21 0|1:62:43,1,17,0:43:1671:1,17,0:40,687,0:-43.721,-53.7398,-190.736,0,-134.394,-132.204,-56.6653,-191.037,-137.321,-193.965 0|1:65:24,1,31,6:24:932:1,31,6:41,1231,232:-94.1232,-98.3885,-174.666,0,-73.6279,-67.2555,-82.2954,-155.914,-57.5336,-157.067 dDocent_Contig_5148 55 . C G 56.661 . AB=0.108696;ABP=125.368;AC=2;AF=0.25;AN=8;AO=12;CIGAR=1X1M1X;DP=182;DPB=182;DPRA=0;EPP=29.068;EPPR=372.161;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=479;QR=6751;RO=170;RPL=12;RPP=29.068;RPPR=372.161;RPR=0;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=170;SRP=372.161;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:70:63,7:63:2503:7:281:-4.59066,0,-204.348 0|0:59:58,1:58:2287:1:39:0,-13.8642,-202.114 0|0:31:30,1:30:1208:1:40:0,-5.33625,-105 0|1:22:19,3:19:753:3:119:-4.47273,0,-61.4713 dDocent_Contig_5149 35 . A T 106.159 . AB=0.102679;ABP=310.157;AC=3;AF=0.375;AN=8;AO=32;CIGAR=1X1M1X;DP=342;DPB=342;DPRA=0;EPP=72.4974;EPPR=673.995;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1260;QR=12305;RO=309;RPL=0;RPP=72.4974;RPPR=673.995;RPR=32;RUN=1;SAF=32;SAP=72.4974;SAR=0;SRF=309;SRP=673.995;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:118:109,9:109:4370:9:355:0,-3.21167,-360.942 0|1:104:94,9:94:3720:9:357:-1.08561,0,-303.42 0|1:66:57,9:57:2275:9:348:-11.8038,0,-185.053 0|1:54:49,5:49:1940:5:200:-2.1243,0,-158.551 dDocent_Contig_5150 123 . C T 276.773 . AB=0.291667;ABP=21.1059;AC=1;AF=0.125;AN=8;AO=14;CIGAR=1X;DP=172;DPB=172;DPRA=1.16129;EPP=33.4109;EPPR=346.103;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=480;QR=5412;RO=158;RPL=0;RPP=33.4109;RPPR=346.103;RPR=14;RUN=1;SAF=0;SAP=33.4109;SAR=14;SRF=0;SRP=346.103;SRR=158;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:48:34,14:34:1159:14:480:-29.0753,0,-90.1647 0/0:75:75,0:75:2589:0:0:0,-22.5772,-233.269 0/0:37:37,0:37:1261:0:0:0,-11.1381,-113.79 0/0:12:12,0:12:403:0:0:0,-3.61236,-36.5926 dDocent_Contig_5151 8 . G A 4210.35 . AB=0.474359;ABP=4.79202;AC=4;AF=0.5;AN=8;AO=148;CIGAR=2X3M1X1M1X;DP=312;DPB=312;DPRA=0;EPP=324.388;EPPR=356.96;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5793;QR=6303;RO=163;RPL=0;RPP=324.388;RPPR=356.96;RPR=148;RUN=1;SAF=148;SAP=324.388;SAR=0;SRF=163;SRP=356.96;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:44:25,19:25:970:19:750:-54.5812,0,-74.3607 0|1:129:71,57:71:2771:57:2231:-162.076,0,-210.635 0|1:83:24,59:24:918:59:2296:-181.845,0,-57.9467 0|1:56:43,13:43:1644:13:516:-29.9311,0,-131.364 dDocent_Contig_5153 56 . T A 31.5216 . AB=0.0957447;ABP=136.44;AC=2;AF=0.25;AN=8;AO=11;CIGAR=1X;DP=192;DPB=192;DPRA=0.594203;EPP=26.8965;EPPR=396.047;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=411;QR=7147;RO=181;RPL=11;RPP=26.8965;RPPR=396.047;RPR=0;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=181;SRP=396.047;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:69:69,0:69:2744:0:0:0,-20.7711,-247.086 0/1:61:56,5:56:2165:5:201:-0.108063,0,-176.664 0/1:33:29,4:29:1154:4:160:-4.84944,0,-94.2073 0/0:29:27,2:27:1084:2:50:0,-3.98503,-93.1028 dDocent_Contig_5154 13 . T A 200.121 . AB=0.0294118;ABP=526.207;AC=4;AF=0.5;AN=8;AO=8;CIGAR=1X9M12I6M;DP=349;DPB=361;DPRA=0;EPP=20.3821;EPPR=100.727;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=305;QR=1741;RO=45;RPL=0;RPP=20.3821;RPPR=100.727;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:103:11,3,2:11:428:3,2:115,80:-6.12535,0,-34.2678,-2.84646,-28.5806,-37.4153 0|1:125:20,0,4:20:774:0,4:0,153:-6.53334,-12.5539,-76.1261,0,-63.572,-62.3679 0|1:77:7,4,0:7:279:4,0:159,0:-10.984,0,-21.7716,-13.0912,-22.9757,-36.0669 0|1:44:7,0,2:7:260:0,2:0,72:-3.76533,-5.87254,-27.1437,0,-21.2706,-20.6686 dDocent_Contig_5156 7 . A G 131.944 . AB=0.5;ABP=3.0103;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=43;DPB=43;DPRA=1.16129;EPP=16.0391;EPPR=74.9036;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.945946;PAO=0;PQA=0;PQR=0;PRO=0;QA=202;QR=1408;RO=37;RPL=0;RPP=16.0391;RPPR=83.3548;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=36;SRP=74.9036;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:12:12,0:12:463:0:0:0,-3.61236,-42.0216 0/1:12:6,6:6:215:6:202:-14.8934,0,-16.082 0/0:9:9,0:9:349:0:0:0,-2.70927,-31.7708 0/0:10:10,0:10:381:0:0:0,-3.0103,-34.645 dDocent_Contig_5157 51 . C T 84.1321 . AB=0.125;ABP=81.1833;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=311;DPB=311;DPRA=0.777328;EPP=20.3821;EPPR=660.966;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=319;QR=11972;RO=303;RPL=8;RPP=20.3821;RPPR=660.966;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=303;SRP=660.966;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:64:56,8:56:2225:8:319:-9.81115,0,-181.167 0/0:123:123,0:123:4820:0:0:0,-37.0267,-433.73 0/0:49:49,0:49:1940:0:0:0,-14.7505,-174.811 0/0:75:75,0:75:2987:0:0:0,-22.5772,-268.931 dDocent_Contig_5158 1 . N G 76.8682 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:81:-7.68573,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_5159 68 . G T 1373.29 . AB=0.393103;ABP=17.4019;AC=3;AF=0.375;AN=8;AO=57;CIGAR=1X2M1X2M1X;DP=160;DPB=160;DPRA=3.22222;EPP=126.784;EPPR=226.672;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2060;QR=3634;RO=103;RPL=57;RPP=126.784;RPPR=226.672;RPR=0;RUN=1;SAF=57;SAP=126.784;SAR=0;SRF=103;SRP=226.672;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:55:30,25:30:1058:25:888:-63.6701,0,-78.9728 0|1:48:31,17:31:1095:17:630:-42.5856,0,-84.4082 0|1:42:27,15:27:943:15:542:-36.4708,0,-72.537 0|0:15:15,0:15:538:0:0:0,-4.51545,-48.7551 dDocent_Contig_5160 33 . T A 441.236 . AB=0.0952381;ABP=32.8939;AC=0;AF=0;AN=8;AO=2;CIGAR=14M1X1M;DP=107;DPB=84.75;DPRA=0;EPP=7.35324;EPPR=174.557;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=3088;RO=79;RPL=0;RPP=7.35324;RPPR=174.557;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=79;SRP=174.557;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:21:15,4,2:15:586:4,2:161,82:-8.65211,0,-46.9544,-6.39604,-41.3881,-53.9622 0|0:29:23,5,0:23:898:5,0:189,0:-8.59089,0,-72.3554,-15.5146,-73.8605,-89.3501 0|0:31:23,8,0:23:906:8,0:283,0:-16.3428,0,-72.5207,-23.2665,-74.9289,-97.8329 0|0:26:18,8,0:18:698:8,0:283,0:-17.9357,0,-55.3234,-23.3542,-57.7317,-80.7224 dDocent_Contig_5161 74 . C A 433.528 . AB=0.160714;ABP=170.989;AC=2;AF=0.25;AN=8;AO=33;CIGAR=1X;DP=425;DPB=425;DPRA=0;EPP=74.6689;EPPR=854.227;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.9974;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1301;QR=15307;RO=392;RPL=33;RPP=74.6689;RPPR=854.227;RPR=0;RUN=1;SAF=33;SAP=74.6689;SAR=0;SRF=392;SRP=854.227;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:122:119,3:119:4677:3:119:0,-25.6306,-409.78 0/1:99:78,21:78:3055:21:828:-45.0347,0,-245.25 0/0:135:132,3:132:5173:3:114:0,-30.0081,-454.839 0/1:69:63,6:63:2402:6:240:-1.20475,0,-195.613 dDocent_Contig_5162 208 . A G 5541.7 . AB=0.794118;ABP=181.837;AC=5;AF=0.625;AN=8;AO=214;CIGAR=1X;DP=263;DPB=263;DPRA=0;EPP=467.705;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7001;QR=1877;RO=49;RPL=214;RPP=467.705;RPPR=109.412;RPR=0;RUN=1;SAF=0;SAP=467.705;SAR=214;SRF=0;SRP=109.412;SRR=49;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:97:28,69:28:1078:69:2296:-177.703,0,-68.1258 0/1:110:15,95:15:573:95:3083:-244.605,0,-18.7973 1/1:25:0,25:0:0:25:818:-73.9277,-7.52575,0 0/1:31:6,25:6:226:25:804:-63.3323,0,-11.3705 dDocent_Contig_5163 209 . N G 77.8076 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:82:-7.77968,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_5164 79 . T C 1059.87 . AB=0.415929;ABP=9.94748;AC=4;AF=0.5;AN=8;AO=47;CIGAR=1X;DP=113;DPB=113;DPRA=0;EPP=105.07;EPPR=146.327;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1623;QR=2264;RO=66;RPL=47;RPP=105.07;RPPR=146.327;RPR=0;RUN=1;SAF=47;SAP=105.07;SAR=0;SRF=66;SRP=146.327;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:19,12:19:659:12:422:-28.9838,0,-50.3026 0/1:30:9,21:9:315:21:715:-55.6369,0,-19.6579 0/1:33:25,8:25:873:8:276:-15.2418,0,-68.9544 0/1:19:13,6:13:417:6:210:-13.5229,0,-32.1181 dDocent_Contig_5165 12 . T C 443.492 . AB=0.271429;ABP=34.7758;AC=1;AF=0.125;AN=8;AO=19;CIGAR=1X;DP=212;DPB=212;DPRA=1.47887;EPP=44.2683;EPPR=422.104;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=739;QR=7541;RO=193;RPL=0;RPP=44.2683;RPPR=422.104;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=193;SRP=422.104;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:70:51,19:51:1998:19:739:-45.7472,0,-158.959 0/0:74:74,0:74:2882:0:0:0,-22.2762,-259.507 0/0:47:47,0:47:1838:0:0:0,-14.1484,-165.646 0/0:21:21,0:21:823:0:0:0,-6.32163,-74.3878 dDocent_Contig_5166 77 . C T 451.258 . AB=0.163043;ABP=184.47;AC=2;AF=0.25;AN=8;AO=31;CIGAR=1X;DP=272;DPB=272;DPRA=1.41026;EPP=70.3259;EPPR=526.335;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.995851;PAO=0;PQA=0;PQR=0;PRO=0;QA=1186;QR=9063;RO=241;RPL=31;RPP=70.3259;RPPR=526.335;RPR=0;RUN=1;SAF=31;SAP=70.3259;SAR=0;SRF=241;SRP=526.335;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:91:79,12:79:2924:12:462:-14.5372,0,-235.939 0/1:93:75,18:75:2843:18:685:-33.9865,0,-228.05 0/0:52:52,0:52:1960:0:0:0,-15.6536,-176.637 0/0:36:35,1:35:1336:1:39:0,-6.94052,-116.629 dDocent_Contig_5167 209 . N G 220.184 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=6;CIGAR=1X;DP=6;DPB=6;DPRA=0;EPP=16.0391;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=227;QR=0;RO=0;RPL=6;RPP=16.0391;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:63:-5.98081,-0.60206,0 1/1:2:0,2:0:0:2:82:-7.77968,-0.60206,0 ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:82:-7.77968,-0.60206,0 dDocent_Contig_5169 165 . A T 32.5962 . AB=0.142857;ABP=26.2761;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=224;DPB=224;DPRA=0.310345;EPP=9.52472;EPPR=482.906;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=121;QR=8762;RO=221;RPL=3;RPP=9.52472;RPPR=482.906;RPR=0;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=482.906;SRR=221;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:142:142,0:142:5633:0:0:0,-42.7463,-506.781 0/0:23:23,0:23:894:0:0:0,-6.92369,-80.7595 0/1:21:18,3:18:728:3:121:-4.95836,0,-59.5233 0/0:38:38,0:38:1507:0:0:0,-11.4391,-135.87 dDocent_Contig_5170 177 . T A 196.846 . AB=0.272727;ABP=17.8158;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X;DP=126;DPB=126;DPRA=1.06452;EPP=22.5536;EPPR=254.901;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=344;QR=4370;RO=116;RPL=9;RPP=22.5536;RPPR=254.901;RPR=0;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=254.901;SRR=116;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:22:22,0:22:804:0:0:0,-6.62266,-72.6698 0/1:33:24,9:24:921:9:344:-21.3835,0,-73.2608 0/0:34:34,0:34:1267:0:0:0,-10.235,-114.31 0/0:37:36,0:36:1378:0:0:0,-10.8371,-124.202 dDocent_Contig_5171 123 . A G 368.886 . AB=0.25;ABP=44.2683;AC=1;AF=0.125;AN=8;AO=21;CIGAR=2X;DP=291;DPB=291;DPRA=0.841772;EPP=48.6112;EPPR=589.308;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=746;QR=9653;RO=270;RPL=0;RPP=48.6112;RPPR=589.308;RPR=21;RUN=1;SAF=0;SAP=48.6112;SAR=21;SRF=0;SRP=589.308;SRR=270;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:76:57,19:57:2070:19:676:-38.2866,0,-163.684 0|0:57:55,2:55:1979:2:70:0,-10.5116,-171.728 0|0:108:108,0:108:3781:0:0:0,-32.5112,-340.469 0|0:50:50,0:50:1823:0:0:0,-15.0515,-164.346 dDocent_Contig_5172 37 . T C 330.488 . AB=0.0604839;ABP=419.127;AC=1;AF=0.125;AN=8;AO=15;CIGAR=1X1M;DP=414;DPB=414;DPRA=2.2963;EPP=35.5824;EPPR=741.311;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=604;QR=13589;RO=340;RPL=0;RPP=35.5824;RPPR=741.311;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=340;SRP=741.311;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:112:95,6,11,0:95:3776:6,11,0:231,425,0:-6.3089,-15.9423,-325.005,0,-291.906,-307.559,-34.9068,-326.811,-310.87,-345.775 0|0:107:80,6,17,4:80:3196:6,17,4:240,655,162:-29.6873,-33.9978,-295.435,0,-243.464,-258.116,-40.409,-283.883,-249.875,-302.448 0|1:141:113,7,10,11:113:4530:7,10,11:272,394,442:-2.41028,-14.0804,-385.187,-4.01242,-354.879,-374.217,0,-350.871,-340.804,-369.908 0|0:54:52,1,1,0:52:2087:1,1,0:40,39,0:0,-12.3535,-184.024,-12.4526,-181.119,-184.113,-15.6536,-184.325,-184.414,-187.62 dDocent_Contig_5173 24 . C G 909.219 . AB=0.170213;ABP=313.808;AC=4;AF=0.5;AN=8;AO=56;CIGAR=1X;DP=329;DPB=329;DPRA=0;EPP=124.613;EPPR=595.822;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2178;QR=10858;RO=273;RPL=0;RPP=124.613;RPPR=595.822;RPR=56;RUN=1;SAF=56;SAP=124.613;SAR=0;SRF=273;SRP=595.822;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:106:93,13:93:3684:13:493:-12.7961,0,-299.682 0/1:130:102,28:102:4057:28:1108:-60.8697,0,-325.984 0/1:60:52,8:52:2082:8:301:-9.37892,0,-169.5 0/1:33:26,7:26:1035:7:276:-15.2751,0,-83.5087 dDocent_Contig_5174 107 . N A 770.275 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=24;CIGAR=1X;DP=24;DPB=24;DPRA=0;EPP=55.1256;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=834;QR=0;RO=0;RPL=0;RPP=55.1256;RPPR=0;RPR=24;RUN=1;SAF=0;SAP=55.1256;SAR=24;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:14:0,14:0:0:14:485:-43.98,-4.21442,0 1/1:2:0,2:0:0:2:70:-6.6474,-0.60206,0 1/1:4:0,4:0:0:4:140:-12.9449,-1.20412,0 1/1:4:0,4:0:0:4:139:-12.8527,-1.20412,0 dDocent_Contig_5175 184 . T G 347.253 . AB=0.148649;ABP=161.704;AC=1;AF=0.125;AN=8;AO=22;CIGAR=1X;DP=363;DPB=363;DPRA=2.06512;EPP=50.7827;EPPR=743.482;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=893;QR=13545;RO=341;RPL=22;RPP=50.7827;RPPR=743.482;RPR=0;RUN=1;SAF=0;SAP=50.7827;SAR=22;SRF=0;SRP=743.482;SRR=341;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:148:126,22:126:5038:22:893:-36.1233,0,-408.742 0/0:88:88,0:88:3458:0:0:0,-26.4906,-311.268 0/0:82:82,0:82:3269:0:0:0,-24.6845,-294.282 0/0:45:45,0:45:1780:0:0:0,-13.5463,-160.416 dDocent_Contig_5176 21 . A G 871.173 . AB=0.423077;ABP=7.01917;AC=4;AF=0.5;AN=8;AO=33;CIGAR=1X;DP=78;DPB=78;DPRA=0;EPP=74.6689;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.818182;PAIREDR=0.8;PAO=0;PQA=0;PQR=0;PRO=0;QA=1295;QR=1800;RO=45;RPL=0;RPP=74.6689;RPPR=100.727;RPR=33;RUN=1;SAF=33;SAP=74.6689;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:14,16:14:562:16:623:-47.3671,0,-41.8912 0/1:18:12,6:12:480:6:229:-15.5505,0,-38.1287 0/1:15:10,5:10:402:5:205:-14.3196,0,-32.0235 0/1:15:9,6:9:356:6:238:-17.2781,0,-27.8834 dDocent_Contig_5177 20 . G A 203.391 . AB=0.140187;ABP=123.334;AC=1;AF=0.125;AN=8;AO=29;CIGAR=1X;DP=752;DPB=752;DPRA=0.968586;EPP=65.983;EPPR=1572.98;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.9931;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1158;QR=28792;RO=723;RPL=0;RPP=65.983;RPPR=1572.98;RPR=29;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=723;SRP=1572.98;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:265:265,0:265:10540:0:0:0,-79.7729,-947.922 0/0:263:249,14:249:9958:14:559:0,-28.5197,-844.939 0/1:107:92,15:92:3642:15:599:-22.038,0,-295.61 0/0:117:117,0:117:4652:0:0:0,-35.2205,-418.593 dDocent_Contig_5178 45 . T A 30192.6 . AB=0.145275;ABP=1552.8;AC=1;AF=0.125;AN=8;AO=206;CIGAR=1X2M1X;DP=1418;DPB=1418;DPRA=0;EPP=450.334;EPPR=613.194;GTI=0;LEN=1;MEANALT=3.25;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.995146;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7866;QR=10896;RO=281;RPL=0;RPP=450.334;RPPR=613.194;RPR=206;RUN=1;SAF=206;SAP=450.334;SAR=0;SRF=281;SRP=613.194;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:394:84,36,273:84:3269:36,273:1376,10868:-869.539,-781.931,-1039.74,0,-155.76,-186.474 0|0:356:67,60,228:67:2616:60,228:2315,9149:-733.666,-563.735,-760.72,0,-24.9502,-146.417 1|0:411:64,90,254:64:2472:90,254:3419,10084:-888.154,-627.068,-802.99,-77.3358,0,-203.896 0|0:257:66,20,171:66:2539:20,171:756,6748:-535.298,-493.204,-695.618,0,-146.48,-156.966 dDocent_Contig_5179 10 . T C 1605.81 . AB=0.394558;ABP=17.2061;AC=4;AF=0.5;AN=8;AO=58;CIGAR=1X;DP=147;DPB=147;DPRA=0;EPP=128.956;EPPR=196.271;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2343;QR=3497;RO=89;RPL=0;RPP=128.956;RPPR=196.271;RPR=58;RUN=1;SAF=58;SAP=128.956;SAR=0;SRF=89;SRP=196.271;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:50:37,13:37:1464:13:525:-32.5452,0,-116.961 0/1:51:30,21:30:1187:21:852:-61.6386,0,-91.7594 0/1:27:13,14:13:495:14:560:-42.6144,0,-36.7585 0/1:19:9,10:9:351:10:406:-31.1806,0,-26.2303 dDocent_Contig_5180 8 . G A 7550.28 . AB=0.598152;ABP=39.2433;AC=4;AF=0.5;AN=8;AO=259;CIGAR=1X1M2D1X;DP=433;DPB=329.4;DPRA=0;EPP=565.422;EPPR=369.989;GTI=0;LEN=1;MEANALT=1.75;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=9907;QR=6590;RO=169;RPL=0;RPP=565.422;RPPR=369.989;RPR=259;RUN=1;SAF=259;SAP=565.422;SAR=0;SRF=169;SRP=369.989;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:159:64,94:64:2487:94:3572:-273.651,0,-176.05 0|1:116:21,92:21:810:92:3550:-285.213,0,-38.8136 0|1:108:54,54:54:2119:54:2064:-153.482,0,-158.406 0|1:50:30,19:30:1174:19:721:-50.0798,0,-90.8111 dDocent_Contig_5181 15 . C G 1173.57 . AB=0.257732;ABP=101.913;AC=2;AF=0.25;AN=8;AO=51;CIGAR=1X;DP=317;DPB=317;DPRA=2.37607;EPP=113.755;EPPR=580.622;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2025;QR=10520;RO=266;RPL=0;RPP=113.755;RPPR=580.622;RPR=51;RUN=1;SAF=51;SAP=113.755;SAR=0;SRF=266;SRP=580.622;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:84:83,1:83:3296:1:41:0,-21.192,-292.613 0/1:123:82,41:82:3216:41:1630:-109.908,0,-252.505 0/0:39:39,0:39:1535:0:0:0,-11.7402,-138.394 0/1:71:62,9:62:2473:9:354:-10.8467,0,-201.348 dDocent_Contig_5182 69 . G T 62.1362 . AB=0.133333;ABP=55.5599;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=127;DPB=127;DPRA=1.64634;EPP=16.0391;EPPR=265.758;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=231;QR=4579;RO=121;RPL=6;RPP=16.0391;RPPR=265.758;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=121;SRP=265.758;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:45:39,6:39:1490:6:231:-7.61156,0,-120.83 0/0:53:53,0:53:1978:0:0:0,-15.9546,-178.261 0/0:20:20,0:20:769:0:0:0,-6.0206,-69.5371 0/0:9:9,0:9:342:0:0:0,-2.70927,-31.1367 dDocent_Contig_5183 150 . C T 115.828 . AB=0.162791;ABP=45.4803;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=79;DPB=79;DPRA=3.58333;EPP=18.2106;EPPR=157.185;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=285;QR=2757;RO=71;RPL=0;RPP=18.2106;RPPR=157.185;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=157.185;SRR=71;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:43:35,7:35:1367:7:285:-12.9807,0,-110.249 0/0:14:14,0:14:537:0:0:0,-4.21442,-48.6669 0/0:14:14,0:14:540:0:0:0,-4.21442,-48.9388 0/0:8:8,0:8:313:0:0:0,-2.40824,-28.531 dDocent_Contig_5184 8 . G A 252.826 . AB=0.224138;ABP=41.348;AC=1;AF=0.125;AN=8;AO=13;CIGAR=1M1I1X3M;DP=540;DPB=544;DPRA=0.360996;EPP=31.2394;EPPR=1132.18;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=490;QR=19932;RO=520;RPL=0;RPP=31.2394;RPPR=1132.18;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=520;SRP=1132.18;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:200:200,0,0:200:7661:0,0:0,0:0,-60.206,-689.319,-60.206,-689.319,-689.319 0|0:158:158,0,0:158:6084:0,0:0,0:0,-47.5627,-547.489,-47.5627,-547.489,-547.489 0|0:124:117,7,0:117:4459:7,0:279,0:0,-11.846,-375.888,-35.2205,-377.995,-400.973 0|1:58:45,0,13:45:1728:0,13:0,490:-26.9816,-40.5279,-182.379,0,-142.229,-138.316 dDocent_Contig_5188 98 . N C 98.551 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=99;QR=0;RO=0;RPL=3;RPP=9.52472;RPPR=0;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:1:0,1:0:0:1:30:-2.99957,-0.30103,0 ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:69:-6.55266,-0.60206,0 dDocent_Contig_5189 167 . C T 336.649 . AB=0.342105;ABP=11.239;AC=2;AF=0.25;AN=8;AO=15;CIGAR=1X15M;DP=103;DPB=103.188;DPRA=0.707071;EPP=35.5824;EPPR=176.728;GTI=0;LEN=1;MEANALT=2.66667;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=584;QR=3094;RO=80;RPL=15;RPP=35.5824;RPPR=176.728;RPR=0;RUN=1;SAF=0;SAP=35.5824;SAR=15;SRF=0;SRP=176.728;SRR=80;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:33:32,0,0:32:1240:0,0:0,0:0,-9.63296,-111.783,-9.63296,-111.783,-111.783 0|1:30:15,3,10:15:575:3,10:119,404:-28.8387,-23.5539,-69.8434,0,-37.4262,-44.2165 0|0:32:28,0,2:28:1083:0,2:0,66:0,-8.42884,-97.4137,-3.1081,-92.0815,-91.4794 0|1:8:5,0,3:5:196:0,3:0,114:-8.22411,-9.72926,-25.8553,0,-16.5102,-15.6071 dDocent_Contig_5190 36 . C T 1717.76 . AB=0.273438;ABP=117.148;AC=2;AF=0.25;AN=8;AO=70;CIGAR=1X;DP=479;DPB=479;DPRA=1.14798;EPP=155.013;EPPR=886.8;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2794;QR=16240;RO=407;RPL=0;RPP=155.013;RPPR=886.8;RPR=70;RUN=1;SAF=70;SAP=155.013;SAR=0;SRF=407;SRP=886.8;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:140:140,0:140:5593:0:0:0,-42.1442,-503.186 0/1:185:123,60:123:4940:60:2412:-161.826,0,-389.082 0/0:83:83,0:83:3293:0:0:0,-24.9855,-296.414 0/1:71:61,10:61:2414:10:382:-13.3474,0,-196.034 dDocent_Contig_5191 38 . C A 4316.76 . AB=0.732323;ABP=95.8353;AC=4;AF=0.5;AN=8;AO=145;CIGAR=1M1I5M1X3M;DP=198;DPB=212.5;DPRA=0;EPP=317.874;EPPR=107.241;GTI=0;LEN=1;MEANALT=1.75;MQM=58.8621;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5541;QR=1885;RO=48;RPL=0;RPP=317.874;RPPR=107.241;RPR=145;RUN=1;SAF=145;SAP=317.874;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:73:26,44:26:1027:44:1704:-132.123,0,-71.2533 0|1:31:6,25:6:233:25:993:-80.3405,0,-12.0068 0|1:55:8,46:8:307:46:1694:-134.682,0,-11.3265 0|1:39:8,30:8:318:30:1150:-91.9281,0,-17.1404 dDocent_Contig_5192 8 . G T 1255.77 . AB=0.189542;ABP=131.099;AC=2;AF=0.25;AN=8;AO=29;CIGAR=1X3M1X2M1X;DP=203;DPB=204;DPRA=0;EPP=65.983;EPPR=207.129;GTI=0;LEN=1;MEANALT=4.33333;MQM=60;MQMR=60;NS=4;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=0.989362;PAO=0;PQA=0;PQR=0;PRO=0;QA=1132;QR=3567;RO=94;RPL=0;RPP=65.983;RPPR=207.129;RPR=29;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=94;SRP=207.129;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:50:22,11,0,0,14:22:833:11,0,0,14:430,0,0,523:-36.1973,-7.45673,-72.4451,-42.82,-75.7564,-111.113,-42.82,-75.7564,-111.113,-111.113,0,-32.9344,-68.2932,-68.2932,-64.0788 0|0:53:31,5,1,7,9:31:1176:5,1,7,9:194,40,279,349:-19.3362,-12.73,-107.646,-25.3727,-105.856,-121.495,-5.69015,-86.1742,-98.8187,-100.007,0,-80.4798,-93.1242,-73.442,-93.7103 0|1:55:25,3,15,10,1:25:953:3,15,10,1:118,589,405,37:-40.9149,-38.7344,-116.003,0,-68.4597,-73.6513,-15.041,-83.5063,-44.7657,-90.2032,-45.4146,-113.879,-75.1402,-90.1869,-123.285 0|1:45:16,13,13,0,2:16:605:13,13,0,2:496,503,0,76:-36.502,-0.631266,-46.3066,0,-8.90051,-45.6775,-41.3185,-50.22,-49.5909,-90.9093,-35.0859,-43.9873,-43.358,-84.6765,-84.0745 dDocent_Contig_5193 35 . G C 373.795 . AB=0.148352;ABP=198.491;AC=2;AF=0.25;AN=8;AO=38;CIGAR=1X;DP=434;DPB=434;DPRA=0;EPP=85.5263;EPPR=860.742;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.947368;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1481;QR=14850;RO=395;RPL=0;RPP=85.5263;RPPR=860.742;RPR=38;RUN=1;SAF=38;SAP=85.5263;SAR=0;SRF=395;SRP=860.742;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:134:126,8:126:4720:8:311:0,-11.984,-396.508 0/1:108:89,19:89:3374:19:740:-34.4181,0,-271.294 0/0:118:115,3:115:4325:3:115:0,-24.7966,-378.612 0/1:74:65,8:65:2431:8:315:-6.35928,0,-196.652 dDocent_Contig_5195 79 . T C 1877.37 . AB=0.623932;ABP=18.6189;AC=4;AF=0.5;AN=8;AO=73;CIGAR=1X;DP=117;DPB=117;DPRA=0;EPP=161.528;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2545;QR=1579;RO=44;RPL=73;RPP=161.528;RPPR=98.5551;RPR=0;RUN=1;SAF=73;SAP=161.528;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:34:19,15:19:677:15:520:-36.894,0,-51.0222 0/1:27:8,19:8:285:19:665:-52.0486,0,-17.8664 0/1:30:8,22:8:293:22:768:-60.4114,0,-17.6907 0/1:26:9,17:9:324:17:592:-45.7811,0,-21.6789 dDocent_Contig_5196 12 . C T 1823.39 . AB=0.221636;ABP=258.092;AC=4;AF=0.5;AN=8;AO=84;CIGAR=1X;DP=379;DPB=379;DPRA=0;EPP=185.414;EPPR=643.595;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.99661;PAO=0;PQA=0;PQR=0;PRO=0;QA=3362;QR=11845;RO=295;RPL=0;RPP=185.414;RPPR=643.595;RPR=84;RUN=1;SAF=84;SAP=185.414;SAR=0;SRF=295;SRP=643.595;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:127:114,13:114:4599:13:522:-9.09515,0,-375.577 0/1:115:82,33:82:3288:33:1322:-84.6153,0,-261.356 0/1:90:63,27:63:2512:27:1069:-69.4094,0,-199.124 0/1:47:36,11:36:1446:11:449:-26.6175,0,-116.239 dDocent_Contig_5198 19 . T C 283.202 . AB=0.22807;ABP=39.6206;AC=1;AF=0.125;AN=8;AO=13;CIGAR=1X;DP=101;DPB=101;DPRA=3.88636;EPP=31.2394;EPPR=194.1;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=517;QR=3485;RO=88;RPL=0;RPP=31.2394;RPPR=194.1;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=88;SRP=194.1;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:57:44,13:44:1728:13:517:-29.7182,0,-138.586 0/0:22:22,0:22:876:0:0:0,-6.62266,-79.1438 0/0:14:14,0:14:563:0:0:0,-4.21442,-51.0133 0/0:8:8,0:8:318:0:0:0,-2.40824,-28.9868 dDocent_Contig_5199 48 . A G 1022.47 . AB=0.177215;ABP=288.985;AC=4;AF=0.5;AN=8;AO=56;CIGAR=1X;DP=316;DPB=316;DPRA=0;EPP=124.613;EPPR=567.593;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.964286;PAIREDR=0.988462;PAO=0;PQA=0;PQR=0;PRO=0;QA=2260;QR=10353;RO=260;RPL=0;RPP=124.613;RPPR=567.593;RPR=56;RUN=1;SAF=56;SAP=124.613;SAR=0;SRF=260;SRP=567.593;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:79:70,9:70:2774:9:365:-9.43311,0,-225.988 0/1:61:38,23:38:1518:23:927:-65.3711,0,-118.499 0/1:91:80,11:80:3215:11:447:-13.1918,0,-262.02 0/1:85:72,13:72:2846:13:521:-21.649,0,-230.666 dDocent_Contig_5200 129 . A G 2863.33 . AB=0.334204;ABP=94.4559;AC=4;AF=0.5;AN=8;AO=128;CIGAR=1X;DP=383;DPB=383;DPRA=0;EPP=280.959;EPPR=556.736;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4531;QR=8953;RO=255;RPL=0;RPP=280.959;RPPR=556.736;RPR=128;RUN=1;SAF=0;SAP=280.959;SAR=128;SRF=0;SRP=556.736;SRR=255;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:47:34,13:34:1167:13:461:-27.6775,0,-91.1852 0/1:108:19,89:19:681:89:3146:-250.855,0,-29.1084 0/1:115:103,12:103:3626:12:428:-4.24064,0,-291.93 0/1:113:99,14:99:3479:14:496:-10.9576,0,-279.31 dDocent_Contig_5201 78 . A G 353.77 . AB=0.253333;ABP=42.6469;AC=4;AF=0.5;AN=8;AO=19;CIGAR=1X;DP=75;DPB=75;DPRA=0;EPP=44.2683;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.946429;PAO=0;PQA=0;PQR=0;PRO=0;QA=710;QR=2086;RO=56;RPL=19;RPP=44.2683;RPPR=124.613;RPR=0;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:18,5:18:664:5:187:-10.2692,0,-53.1563 0/1:23:18,5:18:671:5:194:-10.9092,0,-53.7862 0/1:19:13,6:13:483:6:218:-14.253,0,-38.0907 0/1:10:7,3:7:268:3:111:-7.34362,0,-21.4734 dDocent_Contig_5202 30 . C A 167.83 . AB=0.195652;ABP=40.0197;AC=2;AF=0.25;AN=8;AO=10;CIGAR=1X;DP=119;DPB=119;DPRA=2;EPP=24.725;EPPR=239.701;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.990826;PAO=0;PQA=0;PQR=0;PRO=0;QA=393;QR=4293;RO=109;RPL=0;RPP=24.725;RPPR=239.701;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=109;SRP=239.701;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:56:55,1:55:2201:1:41:0,-12.7631,-194.169 0/1:34:26,8:26:997:8:315:-18.4807,0,-79.7975 0/1:12:11,1:11:432:1:37:-0.0854694,0,-35.6173 0/0:17:17,0:17:663:0:0:0,-5.11751,-59.9988 dDocent_Contig_5203 16 . A T 637.117 . AB=0.265306;ABP=49.8964;AC=1;AF=0.125;AN=8;AO=26;CIGAR=1X;DP=293;DPB=293;DPRA=1.50769;EPP=59.4686;EPPR=582.793;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1048;QR=10601;RO=267;RPL=0;RPP=59.4686;RPPR=582.793;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=267;SRP=582.793;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:98:72,26:72:2875:26:1048:-65.1096,0,-229.347 0/0:90:90,0:90:3596:0:0:0,-27.0927,-323.671 0/0:69:69,0:69:2738:0:0:0,-20.7711,-246.545 0/0:36:36,0:36:1392:0:0:0,-10.8371,-125.53 dDocent_Contig_5204 82 . G A 2399.46 . AB=0.342193;ABP=68.1184;AC=4;AF=0.5;AN=8;AO=103;CIGAR=1X;DP=301;DPB=301;DPRA=0;EPP=226.672;EPPR=432.962;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3741;QR=7253;RO=198;RPL=103;RPP=226.672;RPPR=432.962;RPR=0;RUN=1;SAF=103;SAP=226.672;SAR=0;SRF=198;SRP=432.962;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:112:87,25:87:3177:25:918:-49.2254,0,-252.422 0/1:81:49,32:49:1809:32:1179:-82.0342,0,-138.701 0/1:67:41,26:41:1498:26:949:-65.5585,0,-114.942 0/1:41:21,20:21:769:20:695:-50.5264,0,-57.1956 dDocent_Contig_5205 22 . C A 1672.64 . AB=0.440299;ABP=7.15878;AC=3;AF=0.375;AN=8;AO=59;CIGAR=1X;DP=187;DPB=187;DPRA=0.842767;EPP=131.127;EPPR=280.959;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2356;QR=5009;RO=128;RPL=0;RPP=131.127;RPPR=280.959;RPR=59;RUN=1;SAF=59;SAP=131.127;SAR=0;SRF=128;SRP=280.959;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:53:53,0:53:2023:0:0:0,-15.9546,-182.263 0/1:55:49,6:49:1948:6:243:-5.69153,0,-158.962 0/1:36:7,29:7:280:29:1154:-93.3024,0,-14.7336 0/1:43:19,24:19:758:24:959:-73.6682,0,-55.5941 dDocent_Contig_5206 39 . T C 15578.9 . AB=0.679945;ABP=207.761;AC=4;AF=0.5;AN=8;AO=495;CIGAR=1X;DP=728;DPB=728;DPRA=0;EPP=1077.89;EPPR=508.963;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.99596;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=19833;QR=9360;RO=233;RPL=0;RPP=1077.89;RPPR=508.963;RPR=495;RUN=1;SAF=495;SAP=1077.89;SAR=0;SRF=233;SRP=508.963;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:213:68,145:68:2735:145:5734:-451.742,0,-182.141 0/1:221:64,157:64:2582:157:6304:-500.547,0,-165.977 0/1:159:43,116:43:1741:116:4680:-373.228,0,-109.039 0/1:135:58,77:58:2302:77:3115:-239.768,0,-166.698 dDocent_Contig_5207 98 . N A 110.985 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=7.37776;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=120;QR=0;RO=0;RPL=4;RPP=11.6962;RPPR=0;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:4:0,4:0:0:4:120:-11.0982,-1.20412,0 dDocent_Contig_5208 41 . G A 16956.7 . AB=0.277462;ABP=457.251;AC=6;AF=0.75;AN=8;AO=293;CIGAR=1X1M;DP=1056;DPB=1056;DPRA=0;EPP=639.252;EPPR=530.678;GTI=0;LEN=1;MEANALT=3.5;MQM=59.3311;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=0.986348;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=11634;QR=9542;RO=243;RPL=0;RPP=639.252;RPPR=530.678;RPR=293;RUN=1;SAF=293;SAP=639.252;SAR=0;SRF=243;SRP=530.678;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:291:95,105,32,58:95:3725:105,32,58:4113,1253,2312:-309.587,0,-274.699,-235.161,-203.284,-531.836,-147.797,-115.919,-351.082,-436.646 1|1:284:50,109,39,85:50:1953:109,39,85:4268,1546,3343:-450.265,-114.416,-242.14,-338.07,-147.704,-486.866,-190.365,0,-223.654,-325.314 1|1:301:39,129,6,127:39:1552:129,6,127:5096,238,5061:-686.362,-278.794,-367.752,-678.511,-386.993,-804.495,-291.514,0,-399.712,-381.073 0|1:180:59,84,14,23:59:2312:84,14,23:3336,555,918:-256.857,0,-164.816,-228.935,-144.42,-414.825,-199.015,-114.499,-343.437,-382.196 dDocent_Contig_5209 36 . A T 445.857 . AB=0.175325;ABP=144.015;AC=1;AF=0.125;AN=8;AO=27;CIGAR=1X;DP=505;DPB=505;DPRA=1.31624;EPP=61.6401;EPPR=1040.97;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1026;QR=18878;RO=478;RPL=0;RPP=61.6401;RPPR=1040.97;RPR=27;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=478;SRP=1040.97;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:176:176,0:176:6934:0:0:0,-52.9813,-623.782 0/1:154:127,27:127:5066:27:1026:-46.2847,0,-409.451 0/0:119:119,0:119:4691:0:0:0,-35.8226,-422.109 0/0:56:56,0:56:2187:0:0:0,-16.8577,-197.009 dDocent_Contig_5210 33 . T C 60.0871 . AB=0.125;ABP=61.6401;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=280;DPB=280;DPRA=0.62069;EPP=16.0391;EPPR=597.994;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=242;QR=10825;RO=274;RPL=0;RPP=16.0391;RPPR=597.994;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=274;SRP=597.994;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:93:93,0:93:3611:0:0:0,-27.9958,-325.02 0/0:73:73,0:73:2940:0:0:0,-21.9752,-264.686 0/0:66:66,0:66:2652:0:0:0,-19.868,-238.798 0/1:48:42,6:42:1622:6:242:-7.70767,0,-131.76 dDocent_Contig_5211 13 . G A 8115.16 . AB=0.64891;ABP=82.5556;AC=4;AF=0.5;AN=8;AO=268;CIGAR=1X3M1X;DP=413;DPB=413;DPRA=0;EPP=584.965;EPPR=298.331;GTI=0;LEN=1;MEANALT=1.75;MQM=59.8657;MQMR=59.9559;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.492647;PAO=0;PQA=0;PQR=0;PRO=0;QA=10455;QR=5035;RO=136;RPL=0;RPP=584.965;RPPR=298.331;RPR=268;RUN=1;SAF=268;SAP=584.965;SAR=0;SRF=136;SRP=298.331;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:166:71,89:71:2630:89:3474:-263.906,0,-188.352 0|1:82:30,49:30:1099:49:1934:-150.095,0,-75.0373 0|1:95:28,67:28:1041:67:2597:-205.296,0,-65.4021 0|1:70:7,63:7:265:63:2450:-199.608,0,-3.13826 dDocent_Contig_5212 69 . T C 1308.11 . AB=0.21843;ABP=204.779;AC=4;AF=0.5;AN=8;AO=64;CIGAR=1X;DP=293;DPB=293;DPRA=0;EPP=141.985;EPPR=500.277;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2501;QR=8753;RO=229;RPL=64;RPP=141.985;RPPR=500.277;RPR=0;RUN=1;SAF=64;SAP=141.985;SAR=0;SRF=229;SRP=500.277;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:64:56,8:56:2160:8:317:-9.62788,0,-175.319 0/1:73:52,21:52:2044:21:834:-53.3986,0,-162.183 0/1:102:75,27:75:2806:27:1030:-62.2711,0,-221.979 0/1:54:46,8:46:1743:8:320:-12.9117,0,-140.838 dDocent_Contig_5213 31 . C A 101.094 . AB=0.162791;ABP=45.4803;AC=1;AF=0.125;AN=8;AO=15;CIGAR=2X;DP=249;DPB=249;DPRA=0.887255;EPP=35.5824;EPPR=511.135;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.987179;PAO=0;PQA=0;PQR=0;PRO=0;QA=595;QR=9385;RO=234;RPL=0;RPP=35.5824;RPPR=511.135;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=234;SRP=511.135;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:68:68,0:68:2728:0:0:0,-20.47,-245.634 0|0:96:90,6:90:3629:6:243:0,-6.6507,-304.378 0|1:43:36,7:36:1423:7:271:-11.8084,0,-115.377 0|0:42:40,2:40:1605:2:81:0,-4.95753,-136.995 dDocent_Contig_5214 166 . C A 126.696 . AB=0.128788;ABP=161.001;AC=4;AF=0.5;AN=8;AO=17;CIGAR=1X;DP=132;DPB=132;DPRA=0;EPP=39.9253;EPPR=252.73;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=648;QR=4485;RO=115;RPL=17;RPP=39.9253;RPPR=252.73;RPR=0;RUN=1;SAF=0;SAP=39.9253;SAR=17;SRF=0;SRP=252.73;SRR=115;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:49:43,6:43:1660:6:209:-4.38646,0,-134.879 0/1:37:32,5:32:1271:5:197:-6.96668,0,-103.517 0/1:23:20,3:20:784:3:121:-4.35651,0,-63.9506 0/1:23:20,3:20:770:3:121:-4.35651,0,-62.6876 dDocent_Contig_5215 10 . G A 3992.79 . AB=0.436137;ABP=14.3818;AC=4;AF=0.5;AN=8;AO=140;CIGAR=1X;DP=321;DPB=321;DPRA=0;EPP=307.016;EPPR=396.047;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5581;QR=7207;RO=181;RPL=0;RPP=307.016;RPPR=396.047;RPR=140;RUN=1;SAF=140;SAP=307.016;SAR=0;SRF=181;SRP=396.047;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:156:96,60:96:3818:60:2390:-168.292,0,-296.663 0/1:90:49,41:49:1947:41:1647:-121.366,0,-148.336 0/1:51:25,26:25:1005:26:1031:-77.7299,0,-75.3918 0/1:24:11,13:11:437:13:513:-39.2888,0,-32.457 dDocent_Contig_5216 8 . G C 1838.09 . AB=0.273038;ABP=134.106;AC=4;AF=0.5;AN=8;AO=80;CIGAR=1X;DP=293;DPB=293;DPRA=0;EPP=176.728;EPPR=465.534;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=0.9125;PAIREDR=0.967136;PAO=0;PQA=0;PQR=0;PRO=0;QA=3090;QR=8163;RO=213;RPL=0;RPP=176.728;RPPR=465.534;RPR=80;RUN=1;SAF=80;SAP=176.728;SAR=0;SRF=213;SRP=465.534;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:54:35,19:35:1346:19:729:-49.6825,0,-105.168 0/1:97:79,18:79:3037:18:696:-33.7739,0,-244.291 0/1:61:46,15:46:1748:15:579:-34.0895,0,-139.212 0/1:81:53,28:53:2032:28:1086:-73.6611,0,-158.733 dDocent_Contig_5217 61 . G A 62.4495 . AB=0.25;ABP=11.6962;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=88;DPB=88;DPRA=0.666667;EPP=11.6962;EPPR=185.414;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=138;QR=2795;RO=84;RPL=4;RPP=11.6962;RPPR=185.414;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=84;SRP=185.414;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:31:31,0:31:1007:0:0:0,-9.33193,-90.9249 0/1:16:12,4:12:411:4:138:-7.94392,0,-32.503 0/0:21:21,0:21:715:0:0:0,-6.32163,-64.6683 0/0:20:20,0:20:662:0:0:0,-6.0206,-59.8905 dDocent_Contig_5218 15 . A G 308.933 . AB=0.2;ABP=61.6401;AC=2;AF=0.25;AN=8;AO=15;CIGAR=1X;DP=122;DPB=122;DPRA=1.59574;EPP=35.5824;EPPR=235.358;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=609;QR=4288;RO=107;RPL=0;RPP=35.5824;RPPR=235.358;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=107;SRP=235.358;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:64:50,14:50:2011:14:569:-32.286,0,-161.91 0/0:41:41,0:41:1635:0:0:0,-12.3422,-147.377 0/0:6:6,0:6:245:0:0:0,-1.80618,-22.4295 0/1:11:10,1:10:397:1:40:-0.684349,0,-32.7759 dDocent_Contig_5220 9 . A C 1108.17 . AB=0.323529;ABP=21.4039;AC=4;AF=0.5;AN=8;AO=22;CIGAR=1X4M;DP=87;DPB=87;DPRA=0;EPP=50.7827;EPPR=68.1545;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=843;QR=1183;RO=30;RPL=0;RPP=50.7827;RPPR=68.1545;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:34:10,9,15:10:397:9,15:358,573:-43.9921,-17.5192,-47.4989,0,-3.20494,-28.1672 0|1:25:8,11,5:8:309:11,5:420,194:-32.0437,0,-22.0655,-18.51,-9.43592,-42.3838 0|1:19:7,12,0:7:278:12,0:473,0:-37.2026,0,-19.6715,-39.3098,-23.2839,-62.1981 0|1:9:5,2,2:5:199:2,2:78,76:-4.9114,0,-15.7969,-0.18849,-10.171,-15.9783 dDocent_Contig_5221 68 . A G 360.879 . AB=0.219512;ABP=87.0622;AC=3;AF=0.375;AN=8;AO=29;CIGAR=1X;DP=148;DPB=148;DPRA=0;EPP=65.983;EPPR=252.803;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.983193;PAO=0;PQA=0;PQR=0;PRO=0;QA=927;QR=3915;RO=119;RPL=29;RPP=65.983;RPPR=261.416;RPR=0;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=118;SRP=252.803;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:20,4:20:629:4:124:-4.24271,0,-49.6829 0/1:54:42,12:42:1424:12:388:-18.9787,0,-112.198 0/1:45:34,11:34:1108:11:350:-18.2637,0,-86.4706 0/0:25:23,2:23:754:2:65:0,-1.35222,-61.9946 dDocent_Contig_5222 28 . T C 12726.4 . AB=0.767176;ABP=327.902;AC=4;AF=0.5;AN=8;AO=402;CIGAR=1X;DP=524;DPB=524;DPRA=0;EPP=875.942;EPPR=267.93;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=15974;QR=4892;RO=122;RPL=0;RPP=875.942;RPPR=267.93;RPR=402;RUN=1;SAF=402;SAP=875.942;SAR=0;SRF=122;SRP=267.93;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:203:89,114:89:3560:114:4563:-349.476,0,-259.318 0/1:170:19,151:19:760:151:5983:-487.08,0,-17.5459 0/1:95:9,86:9:368:86:3374:-275.109,0,-4.8875 0/1:56:5,51:5:204:51:2054:-168.184,0,-1.88635 dDocent_Contig_5223 29 . G A 1882.98 . AB=0.481752;ABP=3.40655;AC=3;AF=0.375;AN=8;AO=66;CIGAR=1X;DP=149;DPB=149;DPRA=3.80556;EPP=146.327;EPPR=183.243;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.893939;PAIREDR=0.915663;PAO=0;PQA=0;PQR=0;PRO=0;QA=2600;QR=3208;RO=83;RPL=0;RPP=146.327;RPPR=183.243;RPR=66;RUN=1;SAF=66;SAP=146.327;SAR=0;SRF=83;SRP=183.243;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:60:48,12:48:1822:12:468:-24.408,0,-146.126 0/1:49:6,43:6:238:43:1685:-137.13,0,-7.0428 0/1:28:17,11:17:671:11:447:-32.1572,0,-52.2936 0/0:12:12,0:12:477:0:0:0,-3.61236,-43.2792 dDocent_Contig_5224 106 . N G 103.54 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=3;CIGAR=2X2M1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=104;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. 1|1:2:0,2:0:0:2:69:-6.55266,-0.60206,0 .:.:.:.:.:.:.:. 1|1:1:0,1:0:0:1:35:-3.49863,-0.30103,0 dDocent_Contig_5225 34 . C T 528.472 . AB=0.185897;ABP=136.695;AC=3;AF=0.375;AN=8;AO=30;CIGAR=1X;DP=179;DPB=179;DPRA=0;EPP=68.1545;EPPR=326.56;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1198;QR=5902;RO=149;RPL=0;RPP=68.1545;RPPR=326.56;RPR=30;RUN=1;SAF=30;SAP=68.1545;SAR=0;SRF=149;SRP=326.56;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:49:39,10:39:1545:10:391:-20.788,0,-124.54 0/1:70:55,15:55:2166:15:603:-33.5355,0,-174.044 0/1:37:33,4:33:1325:4:163:-3.92032,0,-108.377 0/0:23:22,1:22:866:1:41:0,-2.82912,-74.1569 dDocent_Contig_5226 30 . A G 656.435 . AB=0.296703;ABP=35.6778;AC=1;AF=0.125;AN=8;AO=28;CIGAR=1X;DP=275;DPB=275;DPRA=1.52294;EPP=63.8115;EPPR=539.364;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1085;QR=9631;RO=247;RPL=0;RPP=63.8115;RPPR=539.364;RPR=28;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=247;SRP=539.364;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:91:64,27:64:2530:27:1046:-67.0415,0,-200.46 0/0:75:74,1:74:2917:1:39:0,-18.6807,-258.753 0/0:71:71,0:71:2708:0:0:0,-21.3731,-243.885 0/0:38:38,0:38:1476:0:0:0,-11.4391,-133.093 dDocent_Contig_5227 94 . T C 531.156 . AB=0.256;ABP=67.6507;AC=4;AF=0.5;AN=8;AO=32;CIGAR=1X;DP=125;DPB=125;DPRA=0;EPP=72.4974;EPPR=204.957;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.989247;PAO=0;PQA=0;PQR=0;PRO=0;QA=1076;QR=2908;RO=93;RPL=32;RPP=72.4974;RPPR=204.957;RPR=0;RUN=1;SAF=32;SAP=72.4974;SAR=0;SRF=93;SRP=204.957;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:16,6:16:480:6:193:-11.0631,0,-36.8665 0/1:26:17,9:17:549:9:298:-19.3143,0,-41.8929 0/1:42:30,12:30:908:12:416:-25.1293,0,-69.3585 0/1:35:30,5:30:971:5:169:-5.00659,0,-77.154 dDocent_Contig_5228 172 . C A 47.8881 . AB=0.230769;ABP=11.1951;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=74;DPB=74;DPRA=1.05556;EPP=11.6962;EPPR=155.013;GTI=0;LEN=1;MEANALT=1;MQM=40;MQMR=37.5714;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=162;QR=2783;RO=70;RPL=4;RPP=11.6962;RPPR=155.013;RPR=0;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=155.013;SRR=70;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:18:18,0:18:705:0:0:0,-5.41854,-56.2654 0/0:18:18,0:18:722:0:0:0,-5.41854,-57.4115 0/0:25:24,1:24:957:1:41:0,-3.77963,-70.5375 0/1:13:10,3:10:399:3:121:-6.48777,0,-26.7758 dDocent_Contig_5230 29 . G C 15825.4 . AB=0.815832;ABP=539.322;AC=4;AF=0.5;AN=8;AO=505;CIGAR=1X;DP=619;DPB=619;DPRA=0;EPP=1099.6;EPPR=246.215;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.990099;PAIREDR=0.973214;PAO=0;PQA=0;PQR=0;PRO=0;QA=19736;QR=4393;RO=112;RPL=0;RPP=1099.6;RPPR=246.215;RPR=505;RUN=1;SAF=505;SAP=1099.6;SAR=0;SRF=112;SRP=246.215;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:188:39,149:39:1532:149:5873:-471.795,0,-81.5235 0/1:182:23,157:23:910:157:6070:-491.689,0,-27.7724 0/1:136:21,115:21:810:115:4529:-366.623,0,-32.2737 0/1:113:29,84:29:1141:84:3264:-259.832,0,-68.9554 dDocent_Contig_5232 8 . G A 716.866 . AB=0.224359;ABP=105.96;AC=1;AF=0.125;AN=8;AO=43;CIGAR=1X;DP=569;DPB=569;DPRA=0.401809;EPP=96.3836;EPPR=1145.2;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.998099;PAO=0;PQA=0;PQR=0;PRO=0;QA=1646;QR=19979;RO=526;RPL=0;RPP=96.3836;RPPR=1145.2;RPR=43;RUN=1;SAF=43;SAP=96.3836;SAR=0;SRF=526;SRP=1145.2;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:258:258,0:258:9777:0:0:0,-77.6657,-879.615 0/1:156:121,35:121:4624:35:1334:-73.3856,0,-369.248 0/0:92:86,6:86:3261:6:234:0,-6.26365,-272.21 0/0:63:61,2:61:2317:2:78:0,-11.5614,-201.341 dDocent_Contig_5233 31 . G C 330.9 . AB=0.191919;ABP=84.627;AC=4;AF=0.5;AN=8;AO=19;CIGAR=1X;DP=99;DPB=99;DPRA=0;EPP=44.2683;EPPR=176.728;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=764;QR=3138;RO=80;RPL=0;RPP=44.2683;RPPR=176.728;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=80;SRP=176.728;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:14,6:14:552:6:243:-16.227,0,-43.9962 0/1:15:13,2:13:511:2:81:-3.17028,0,-41.8187 0/1:50:43,7:43:1669:7:285:-10.9729,0,-135.385 0/1:14:10,4:10:406:4:155:-10.1105,0,-32.686 dDocent_Contig_5236 86 . A G 411.394 . AB=0.219298;ABP=81.0309;AC=4;AF=0.5;AN=8;AO=25;CIGAR=1X;DP=114;DPB=114;DPRA=0;EPP=57.2971;EPPR=196.271;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=905;QR=3226;RO=89;RPL=25;RPP=57.2971;RPPR=196.271;RPR=0;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=89;SRP=196.271;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:43:35,8:35:1257:8:286:-13.1398,0,-100.484 0/1:38:27,11:27:982:11:401:-24.9956,0,-77.2542 0/1:17:14,3:14:510:3:107:-4.8643,0,-41.1214 0/1:16:13,3:13:477:3:111:-5.53744,0,-38.456 dDocent_Contig_5238 24 . G A 46.68 . AB=0.115385;ABP=69.8248;AC=2;AF=0.25;AN=8;AO=6;CIGAR=1X;DP=111;DPB=111;DPRA=0.881356;EPP=16.0391;EPPR=231.015;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=238;QR=4176;RO=105;RPL=0;RPP=16.0391;RPPR=231.015;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=105;SRP=231.015;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:30:30,0:30:1200:0:0:0,-9.0309,-108.274 0/1:39:34,5:34:1337:5:197:-6.36532,0,-108.838 0/0:29:29,0:29:1157:0:0:0,-8.72987,-104.408 0/1:13:12,1:12:482:1:41:-0.181177,0,-39.8177 dDocent_Contig_5239 9 . A G 133.791 . AB=0.139785;ABP=107.825;AC=3;AF=0.375;AN=8;AO=15;CIGAR=1X;DP=119;DPB=119;DPRA=0;EPP=35.5824;EPPR=228.843;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.8;PAIREDR=0.961538;PAO=0;PQA=0;PQR=0;PRO=0;QA=583;QR=3905;RO=104;RPL=0;RPP=35.5824;RPPR=228.843;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=104;SRP=228.843;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:27,4:27:1005:4:156:-5.08536,0,-81.4251 0/1:32:26,6:26:985:6:232:-11.616,0,-79.3301 0/1:30:27,3:27:1015:3:117:-1.87948,0,-82.6279 0/0:26:24,2:24:900:2:78:0,-0.423307,-73.9113 dDocent_Contig_5240 1 . N G 103.51 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=111;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:111:-10.3505,-0.90309,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_5241 144 . G C 203.15 . AB=0.210526;ABP=44.4969;AC=2;AF=0.25;AN=8;AO=15;CIGAR=1X;DP=116;DPB=116;DPRA=0;EPP=35.5824;EPPR=222.329;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=568;QR=4052;RO=101;RPL=0;RPP=35.5824;RPPR=222.329;RPR=15;RUN=1;SAF=0;SAP=35.5824;SAR=15;SRF=0;SRP=222.329;SRR=101;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:42:40,2:40:1586:2:82:0,-4.86358,-135.195 0/1:43:33,10:33:1332:10:365:-20.2379,0,-107.192 0/0:17:16,1:16:645:1:40:0,-1.12183,-54.3881 0/1:14:12,2:12:489:2:81:-3.47131,0,-40.1463 dDocent_Contig_5242 77 . G T 105.31 . AB=0.195122;ABP=36.112;AC=2;AF=0.25;AN=8;AO=8;CIGAR=1X;DP=73;DPB=73;DPRA=1.28125;EPP=20.3821;EPPR=144.156;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.969231;PAO=0;PQA=0;PQR=0;PRO=0;QA=270;QR=2223;RO=65;RPL=8;RPP=20.3821;RPPR=144.156;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=65;SRP=144.156;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:20:20,0:20:691:0:0:0,-6.0206,-62.5124 0/1:23:17,6:17:595:6:209:-12.2274,0,-46.9551 0/0:12:12,0:12:409:0:0:0,-3.61236,-37.1373 0/1:18:16,2:16:528:2:61:-0.374994,0,-42.4153 dDocent_Contig_5243 17 . C A 111.943 . AB=0.118812;ABP=130.482;AC=1;AF=0.125;AN=8;AO=16;CIGAR=1X;DP=260;DPB=260;DPRA=0.698413;EPP=37.7539;EPPR=532.85;GTI=0;LEN=1;MEANALT=1;MQM=59.4375;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=0.9375;PAIREDR=0.995902;PAO=0;PQA=0;PQR=0;PRO=0;QA=638;QR=9850;RO=244;RPL=0;RPP=37.7539;RPPR=532.85;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=244;SRP=532.85;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:101:89,12:89:3614:12:474:-12.5922,0,-294.858 0/0:84:84,0:84:3395:0:0:0,-25.2865,-305.575 0/0:55:52,3:52:2094:3:123:0,-5.09186,-177.173 0/0:20:19,1:19:747:1:41:0,-1.92603,-63.4569 dDocent_Contig_5244 17 . T A 205.404 . AB=0.0909091;ABP=50.9801;AC=0;AF=0;AN=8;AO=5;CIGAR=2X2M1X10M1X;DP=228;DPB=228;DPRA=1;EPP=13.8677;EPPR=430.79;GTI=0;LEN=1;MEANALT=3.5;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=199;QR=7728;RO=197;RPL=0;RPP=13.8677;RPPR=430.79;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=197;SRP=430.79;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:60:60,0,0:60:2373:0,0:0,0:0,-18.0618,-213.747,-18.0618,-213.747,-213.747 0|0:87:75,4,2:75:2944:4,2:157,79:0,-13.5198,-254.436,-16.0694,-249.139,-257.627 0|0:48:40,6,0:40:1563:6,0:237,0:-7.56643,0,-126.819,-19.6076,-128.625,-148.129 0|0:33:22,8,3:22:848:8,3:309,120:-16.3719,0,-67.2057,-13.0967,-59.7269,-81.8436 dDocent_Contig_5245 57 . T C 180.063 . AB=0.133333;ABP=143.143;AC=1;AF=0.125;AN=8;AO=21;CIGAR=2X3M1X1M1X2M1X;DP=450;DPB=450;DPRA=0.68018;EPP=48.6112;EPPR=915.029;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=796;QR=15907;RO=420;RPL=21;RPP=48.6112;RPPR=915.029;RPR=0;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=420;SRP=915.029;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:148:145,0:145:5463:0:0:0,-43.6493,-491.486 0|0:152:146,4:146:5570:4:153:0,-31.3781,-487.146 0|1:120:100,16:100:3783:16:606:-19.7052,0,-305.434 0|0:30:29,1:29:1091:1:37:0,-5.33307,-94.7964 dDocent_Contig_5247 63 . A C 407.831 . AB=0.308824;ABP=24.5973;AC=3;AF=0.375;AN=8;AO=21;CIGAR=1X;DP=79;DPB=79;DPRA=2.06061;EPP=48.6112;EPPR=128.956;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=729;QR=1941;RO=58;RPL=21;RPP=48.6112;RPPR=128.956;RPR=0;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:38:22,16:22:735:16:554:-38.7486,0,-55.0232 0/0:11:11,0:11:368:0:0:0,-3.31133,-33.4426 0/1:17:14,3:14:460:3:105:-4.67865,0,-36.596 0/1:13:11,2:11:378:2:70:-2.73401,0,-30.4379 dDocent_Contig_5248 38 . C G 620.989 . AB=0.194118;ABP=141.167;AC=3;AF=0.375;AN=8;AO=36;CIGAR=1X;DP=250;DPB=250;DPRA=0;EPP=81.1833;EPPR=467.705;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=0.995327;PAO=0;PQA=0;PQR=0;PRO=0;QA=1429;QR=8440;RO=214;RPL=0;RPP=81.1833;RPPR=467.705;RPR=36;RUN=1;SAF=36;SAP=81.1833;SAR=0;SRF=214;SRP=467.705;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:80:77,3:77:3059:3:122:0,-12.7099,-264.034 0/1:82:67,15:67:2642:15:607:-30.2838,0,-213.234 0/1:46:39,7:39:1500:7:262:-10.0822,0,-121.404 0/1:42:31,11:31:1239:11:438:-27.1309,0,-99.1385 dDocent_Contig_5249 17 . T C 97.6862 . AB=0.103139;ABP=308.078;AC=2;AF=0.25;AN=8;AO=39;CIGAR=1X;DP=569;DPB=569;DPRA=0;EPP=87.6977;EPPR=1153.89;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.025641;PAIREDR=0.928302;PAO=0;PQA=0;PQR=0;PRO=0;QA=1508;QR=21011;RO=530;RPL=0;RPP=87.6977;RPPR=1153.89;RPR=39;RUN=1;SAF=39;SAP=87.6977;SAR=0;SRF=530;SRP=1153.89;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:174:165,9:165:6543:9:351:0,-20.4276,-556.634 0/0:172:165,7:165:6549:7:273:0,-26.8391,-564.202 0/1:120:109,11:109:4278:11:425:-2.47937,0,-348.865 0/1:103:91,12:91:3641:12:459:-10.6526,0,-296.709 dDocent_Contig_5250 8 . G T 294.242 . AB=0.333333;ABP=11.6962;AC=1;AF=0.125;AN=8;AO=13;CIGAR=1X;DP=107;DPB=107;DPRA=2.24242;EPP=31.2394;EPPR=207.129;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.904255;PAO=0;PQA=0;PQR=0;PRO=0;QA=497;QR=3598;RO=94;RPL=0;RPP=31.2394;RPPR=207.129;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=94;SRP=207.129;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:24,12:24:932:12:459:-30.8221,0,-73.3591 0/0:38:37,1:37:1422:1:38:0,-7.64187,-124.463 0/0:18:18,0:18:673:0:0:0,-5.41854,-60.8978 0/0:15:15,0:15:571:0:0:0,-4.51545,-51.7307 dDocent_Contig_5251 21 . A T 95.7663 . AB=0.148148;ABP=61.0771;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X;DP=367;DPB=367;DPRA=0.522822;EPP=22.5536;EPPR=780.397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=343;QR=14217;RO=358;RPL=0;RPP=22.5536;RPPR=780.397;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=358;SRP=780.397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:136:136,0:136:5417:0:0:0,-40.9401,-487.38 0/0:72:71,1:71:2810:1:41:0,-17.5796,-248.914 0/0:105:105,0:105:4164:0:0:0,-31.6081,-374.736 0/1:54:46,8:46:1826:8:302:-11.2756,0,-148.3 dDocent_Contig_5252 15 . A T 345.337 . AB=0.123239;ABP=353.168;AC=2;AF=0.25;AN=8;AO=43;CIGAR=1X;DP=519;DPB=519;DPRA=1.26852;EPP=96.3836;EPPR=1027.96;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.976744;PAIREDR=0.817227;PAO=0;PQA=0;PQR=0;PRO=0;QA=1646;QR=18568;RO=476;RPL=0;RPP=96.3836;RPPR=1036.63;RPR=43;RUN=1;SAF=43;SAP=96.3836;SAR=0;SRF=475;SRP=1027.96;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:156:138,18:138:5385:18:701:-16.4592,0,-437.559 0/0:108:108,0:108:4261:0:0:0,-32.5112,-383.466 0/0:127:119,8:119:4658:8:282:0,-12.5205,-393.473 0/1:128:111,17:111:4264:17:663:-21.4724,0,-345.22 dDocent_Contig_5253 150 . C T 415.986 . AB=0.247059;ABP=50.2462;AC=1;AF=0.125;AN=8;AO=40;CIGAR=1X;DP=345;DPB=345;DPRA=0;EPP=89.8692;EPPR=663.138;GTI=0;LEN=1;MEANALT=1.25;MQM=40;MQMR=43.5461;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.924342;PAO=0;PQA=0;PQR=0;PRO=0;QA=1560;QR=11617;RO=304;RPL=0;RPP=89.8692;RPPR=663.138;RPR=40;RUN=1;SAF=0;SAP=89.8692;SAR=40;SRF=0;SRP=663.138;SRR=304;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:77:71,6:71:2710:6:239:0,-2.95383,-216.374 0/1:85:63,21:63:2405:21:817:-43.2975,0,-159.719 0/0:105:96,9:96:3704:9:358:0,-1.41442,-272.249 0/0:78:74,4:74:2798:4:146:0,-10.8316,-219.662 dDocent_Contig_5254 24 . A G 1361.68 . AB=0.0432692;ABP=379.886;AC=2;AF=0.25;AN=8;AO=9;CIGAR=2X;DP=309;DPB=309;DPRA=0;EPP=22.5536;EPPR=530.678;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=1.38778e-17;PAIRED=1;PAIREDR=0.995885;PAO=0;PQA=0;PQR=0;PRO=0;QA=352;QR=9640;RO=243;RPL=0;RPP=22.5536;RPPR=530.678;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=243;SRP=530.678;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:101:58,0,43:58:2311:0,43:0,1734:-125.872,-143.332,-333.628,0,-190.697,-177.753 0|0:134:119,1,14:119:4734:1,14:39,568:-11.0345,-43.6522,-433.1,0,-386.558,-385.549 0|1:37:33,4,0:33:1303:4,0:158,0:-3.46237,0,-106.404,-13.3964,-107.608,-120.61 0|1:37:33,4,0:33:1292:4,0:155,0:-3.18555,0,-105.408,-13.1195,-106.612,-119.344 dDocent_Contig_5255 19 . G A 742.747 . AB=0.204082;ABP=152.089;AC=3;AF=0.375;AN=8;AO=43;CIGAR=1X;DP=259;DPB=259;DPRA=0;EPP=96.3836;EPPR=472.048;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.990741;PAO=0;PQA=0;PQR=0;PRO=0;QA=1645;QR=8632;RO=216;RPL=0;RPP=96.3836;RPPR=472.048;RPR=43;RUN=1;SAF=43;SAP=96.3836;SAR=0;SRF=216;SRP=472.048;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:53:31,22:31:1253:22:873:-62.9281,0,-97.0834 0/1:100:89,11:89:3541:11:422:-8.21809,0,-288.621 0/0:63:60,3:60:2409:3:115:0,-8.23986,-206.229 0/1:43:36,7:36:1429:7:235:-8.52649,0,-115.918 dDocent_Contig_5256 21 . A T 14446.8 . AB=0.464522;ABP=14.5661;AC=4;AF=0.5;AN=8;AO=491;CIGAR=1X;DP=1057;DPB=1057;DPRA=0;EPP=1069.2;EPPR=1232.06;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.991853;PAIREDR=0.991166;PAO=0;PQA=0;PQR=0;PRO=0;QA=19675;QR=22620;RO=566;RPL=0;RPP=1069.2;RPPR=1232.06;RPR=491;RUN=1;SAF=491;SAP=1069.2;SAR=0;SRF=566;SRP=1232.06;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:275:153,122:153:6136:122:4902:-358.273,0,-469.202 0/1:261:134,127:134:5381:127:5068:-377.421,0,-405.551 0/1:319:181,138:181:7173:138:5536:-402.022,0,-549.211 0/1:202:98,104:98:3930:104:4169:-314.364,0,-292.875 dDocent_Contig_5258 122 . G T 1624.01 . AB=0.254545;ABP=175.702;AC=2;AF=0.25;AN=8;AO=92;CIGAR=1X;DP=496;DPB=496;DPRA=2.29101;EPP=202.786;EPPR=878.114;GTI=0;LEN=1;MEANALT=1.33333;MQM=59.9239;MQMR=59.9404;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3216;QR=14201;RO=403;RPL=0;RPP=202.786;RPPR=878.114;RPR=92;RUN=1;SAF=0;SAP=202.786;SAR=92;SRF=0;SRP=878.114;SRR=403;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:175:138,36:138:4869:36:1246:-59.9816,0,-385.912 0/1:155:107,48:107:3767:48:1691:-105.817,0,-292.573 0/0:103:95,8:95:3350:8:279:0,-5.55743,-276.269 0/0:63:63,0:63:2215:0:0:0,-18.9649,-199.614 dDocent_Contig_5259 35 . G T 540.065 . AB=0.463415;ABP=3.48696;AC=2;AF=0.25;AN=8;AO=21;CIGAR=1X;DP=136;DPB=136;DPRA=2.18519;EPP=48.6112;EPPR=252.73;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=846;QR=4527;RO=115;RPL=0;RPP=48.6112;RPPR=252.73;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=115;SRP=252.73;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:77:75,2:75:2990:2:79:0,-15.6821,-261.69 0/1:31:15,16:15:580:16:649:-49.412,0,-43.2054 0/0:18:18,0:18:679:0:0:0,-5.41854,-61.4204 0/1:10:7,3:7:278:3:118:-7.99242,0,-22.3793 dDocent_Contig_5260 16 . A T 17536.3 . AB=0.691925;ABP=260.569;AC=4;AF=0.5;AN=8;AO=557;CIGAR=2X;DP=805;DPB=805;DPRA=0;EPP=1212.52;EPPR=335.246;GTI=0;LEN=1;MEANALT=4.25;MQM=59.9713;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=0.996409;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=21966;QR=5803;RO=153;RPL=0;RPP=1212.52;RPPR=335.246;RPR=557;RUN=1;SAF=557;SAP=1212.52;SAR=0;SRF=153;SRP=335.246;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:323:54,14,220,21:54:2046:14,220,21:544,8684,847:-698.234,-669.795,-833.313,0,-123.032,-101.501,-644.67,-767.708,-97.9045,-806.081 0|1:233:61,7,151,9:61:2331:7,151,9:274,5949,348:-471.023,-466.856,-656.003,0,-168.72,-145.794,-460.805,-629.529,-162.668,-649.349 0|1:140:20,5,108,2:20:734:5,108,2:199,4269,82:-345.241,-334.876,-393.352,0,-43.574,-27.4511,-344.493,-388.088,-53.1923,-403.872 0|1:109:18,7,78,5:18:692:7,78,5:275,3064,196:-246.535,-229.339,-284.036,0,-34.1842,-33.3201,-235.835,-270.025,-40.6817,-291.135 dDocent_Contig_5261 44 . C A 287.697 . AB=0.186813;ABP=80.539;AC=1;AF=0.125;AN=8;AO=17;CIGAR=1X;DP=334;DPB=334;DPRA=1.12346;EPP=39.9253;EPPR=691.367;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=636;QR=12319;RO=317;RPL=0;RPP=39.9253;RPPR=691.367;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=317;SRP=691.367;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:91:74,17:74:2886:17:636:-30.1676,0,-232.459 0/0:107:107,0:107:4152:0:0:0,-32.2102,-373.68 0/0:102:102,0:102:3959:0:0:0,-30.7051,-356.318 0/0:34:34,0:34:1322:0:0:0,-10.235,-119.247 dDocent_Contig_5262 63 . C T 1291.48 . AB=0.422414;ABP=9.07545;AC=4;AF=0.5;AN=8;AO=49;CIGAR=1X;DP=116;DPB=116;DPRA=0;EPP=109.412;EPPR=148.499;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1890;QR=2652;RO=67;RPL=49;RPP=109.412;RPPR=148.499;RPR=0;RUN=1;SAF=49;SAP=109.412;SAR=0;SRF=67;SRP=148.499;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:13,12:13:511:12:443:-32.6747,0,-38.8072 0/1:26:15,11:15:589:11:414:-29.7739,0,-45.5124 0/1:44:26,18:26:1035:18:710:-50.9801,0,-80.1969 0/1:21:13,8:13:517:8:323:-23.1175,0,-40.552 dDocent_Contig_5265 25 . T A 204.865 . AB=0.138889;ABP=125.337;AC=1;AF=0.125;AN=8;AO=15;CIGAR=1X;DP=244;DPB=244;DPRA=2.38235;EPP=35.5824;EPPR=500.277;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=604;QR=9236;RO=229;RPL=0;RPP=35.5824;RPPR=500.277;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=229;SRP=500.277;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:28:28,0:28:1130:0:0:0,-8.42884,-101.98 0/1:108:93,15:93:3747:15:604:-22.1855,0,-304.719 0/0:76:76,0:76:3065:0:0:0,-22.8783,-275.923 0/0:32:32,0:32:1294:0:0:0,-9.63296,-116.722 dDocent_Contig_5266 120 . G T 8287.47 . AB=0.514329;ABP=4.19266;AC=4;AF=0.5;AN=8;AO=341;CIGAR=1X;DP=663;DPB=663;DPRA=0;EPP=743.482;EPPR=702.224;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.996894;PAO=0;PQA=0;PQR=0;PRO=0;QA=11497;QR=10656;RO=322;RPL=0;RPP=743.482;RPPR=702.224;RPR=341;RUN=1;SAF=0;SAP=743.482;SAR=341;SRF=0;SRP=702.224;SRR=322;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:194:114,80:114:3777:80:2707:-185.484,0,-281.75 0/1:189:63,126:63:2070:126:4211:-322.303,0,-129.674 0/1:155:86,69:86:2836:69:2347:-164.837,0,-208.831 0/1:125:59,66:59:1973:66:2232:-163.521,0,-140.216 dDocent_Contig_5267 141 . C T 33.0395 . AB=0.115385;ABP=170.047;AC=1;AF=0.125;AN=8;AO=33;CIGAR=1X;DP=391;DPB=391;DPRA=0;EPP=74.6689;EPPR=780.397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1115;QR=11722;RO=358;RPL=0;RPP=74.6689;RPPR=780.397;RPR=33;RUN=1;SAF=0;SAP=74.6689;SAR=33;SRF=0;SRP=780.397;SRR=358;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:104:96,8:96:3194:8:277:0,-6.04065,-262.428 0/0:109:103,6:103:3341:6:211:0,-13.4786,-281.581 0/1:130:115,15:115:3727:15:487:-5.00267,0,-296.514 0/0:48:44,4:44:1460:4:140:0,-1.50465,-118.744 dDocent_Contig_5268 107 . N T 60.7946 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=64;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:64:-6.07837,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_5269 209 . N G 194.524 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=5;CIGAR=1X;DP=5;DPB=5;DPRA=0;EPP=13.8677;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=204;QR=0;RO=0;RPL=5;RPP=13.8677;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:123:-11.4648,-0.90309,0 1/1:2:0,2:0:0:2:81:-7.68573,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_5271 41 . C G 250.006 . AB=0.129412;ABP=205.8;AC=3;AF=0.375;AN=8;AO=22;CIGAR=1X;DP=192;DPB=192;DPRA=2.57576;EPP=50.7827;EPPR=372.161;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=877;QR=6725;RO=170;RPL=0;RPP=50.7827;RPPR=372.161;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=170;SRP=372.161;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:92:78,14:78:3095:14:565:-23.4977,0,-250.94 0/1:54:48,6:48:1936:6:231:-4.89758,0,-158.18 0/1:24:22,2:22:821:2:81:-0.461014,0,-66.9618 0/0:22:22,0:22:873:0:0:0,-6.62266,-78.8818 dDocent_Contig_5272 15 . A T 594.438 . AB=0.225;ABP=81.8347;AC=2;AF=0.25;AN=8;AO=27;CIGAR=1X;DP=256;DPB=256;DPRA=0.882353;EPP=61.6401;EPPR=500.277;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.995633;PAO=0;PQA=0;PQR=0;PRO=0;QA=1092;QR=9204;RO=229;RPL=0;RPP=61.6401;RPPR=500.277;RPR=27;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=229;SRP=500.277;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:86:86,0:86:3468:0:0:0,-25.8886,-312.139 0/1:80:62,18:62:2480:18:729:-41.8498,0,-199.258 0/0:50:50,0:50:2016:0:0:0,-15.0515,-181.622 0/1:40:31,9:31:1240:9:363:-20.992,0,-99.8298 dDocent_Contig_5273 81 . C T 184.083 . AB=0.150943;ABP=115.189;AC=2;AF=0.25;AN=8;AO=21;CIGAR=1X;DP=199;DPB=199;DPRA=1.50926;EPP=48.6112;EPPR=389.532;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=771;QR=6508;RO=178;RPL=21;RPP=48.6112;RPPR=389.532;RPR=0;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=178;SRP=389.532;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:57:52,5:52:1906:5:182:0,-0.423699,-155.075 0/1:71:62,9:62:2252:9:333:-8.94907,0,-181.56 0/1:35:28,7:28:1032:7:256:-12.8568,0,-82.659 0/0:36:36,0:36:1318:0:0:0,-10.8371,-118.921 dDocent_Contig_5274 25 . A G 217.587 . AB=0.3;ABP=13.4334;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X;DP=99;DPB=99;DPRA=1.30435;EPP=22.5536;EPPR=198.443;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=357;QR=3597;RO=90;RPL=0;RPP=22.5536;RPPR=198.443;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=90;SRP=198.443;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:40:40,0:40:1604:0:0:0,-12.0412,-144.588 0/1:30:21,9:21:838:9:357:-23.4577,0,-66.7012 0/0:19:19,0:19:758:0:0:0,-5.71957,-68.5419 0/0:10:10,0:10:397:0:0:0,-3.0103,-36.0859 dDocent_Contig_5276 14 . G A 899.424 . AB=0.233503;ABP=124.536;AC=4;AF=0.5;AN=8;AO=46;CIGAR=1X;DP=197;DPB=197;DPRA=0;EPP=102.898;EPPR=330.903;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=0.869565;PAIREDR=0.966887;PAO=0;PQA=0;PQR=0;PRO=0;QA=1725;QR=5721;RO=151;RPL=0;RPP=102.898;RPPR=330.903;RPR=46;RUN=1;SAF=46;SAP=102.898;SAR=0;SRF=151;SRP=330.903;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:63:50,13:50:1884:13:488:-25.2984,0,-150.843 0/1:38:29,9:29:1102:9:328:-18.4224,0,-88.042 0/1:59:39,20:39:1486:20:752:-50.2442,0,-116.257 0/1:37:33,4:33:1249:4:157:-3.37069,0,-101.568 dDocent_Contig_5277 98 . N T 66.4841 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=70;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:70:-6.64733,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_5278 1 . N G 427.123 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=12;CIGAR=1X;DP=12;DPB=12;DPRA=0;EPP=29.068;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=463;QR=0;RO=0;RPL=0;RPP=29.068;RPPR=0;RPR=12;RUN=1;SAF=0;SAP=29.068;SAR=12;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:11:0,11:0:0:11:424:-38.5136,-3.31133,0 ./.:.:.:.:.:.:.:. 1/1:1:0,1:0:0:1:39:-3.89656,-0.30103,0 ./.:.:.:.:.:.:.:. dDocent_Contig_5279 187 . T C 75.6568 . AB=0.363636;ABP=4.78696;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=84;DPB=84;DPRA=3.42105;EPP=16.0391;EPPR=172.385;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=201;QR=3062;RO=78;RPL=6;RPP=16.0391;RPPR=172.385;RPR=0;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=172.385;SRR=78;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:12:12,0:12:482:0:0:0,-3.61236,-43.7315 0/0:54:52,2:52:2042:2:65:0,-10.0822,-177.798 0/1:11:7,4:7:282:4:136:-9.26464,0,-22.4413 0/0:7:7,0:7:256:0:0:0,-2.10721,-23.3814 dDocent_Contig_5280 107 . N C 487.403 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=16;CIGAR=1X;DP=16;DPB=16;DPRA=0;EPP=37.7539;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=524;QR=0;RO=0;RPL=0;RPP=37.7539;RPPR=0;RPR=16;RUN=1;SAF=0;SAP=37.7539;SAR=16;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:68:-6.45793,-0.60206,0 1/1:5:0,5:0:0:5:165:-15.1748,-1.50515,0 1/1:9:0,9:0:0:9:291:-26.5052,-2.70927,0 dDocent_Contig_5281 8 . G A 1054.67 . AB=0.197917;ABP=231.286;AC=4;AF=0.5;AN=8;AO=57;CIGAR=1X;DP=288;DPB=288;DPRA=0;EPP=126.784;EPPR=504.62;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.982684;PAO=0;PQA=0;PQR=0;PRO=0;QA=2202;QR=8831;RO=231;RPL=0;RPP=126.784;RPPR=504.62;RPR=57;RUN=1;SAF=57;SAP=126.784;SAR=0;SRF=231;SRP=504.62;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:128:108,20:108:4111:20:773:-31.3663,0,-331.547 0/1:88:68,20:68:2610:20:772:-43.3176,0,-208.602 0/1:55:42,13:42:1610:13:501:-28.8818,0,-128.608 0/1:17:13,4:13:500:4:156:-9.29978,0,-40.2302 dDocent_Contig_5282 63 . A C 1798.51 . AB=0.114007;ABP=797.599;AC=0;AF=0;AN=8;AO=106;CIGAR=1X2M3X;DP=2542;DPB=2542;DPRA=0.968613;EPP=233.186;EPPR=4964.82;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.688679;PAIREDR=0.70547;PAO=0;PQA=0;PQR=0;PRO=0;QA=4163;QR=88639;RO=2285;RPL=106;RPP=233.186;RPPR=4964.82;RPR=0;RUN=1;SAF=106;SAP=233.186;SAR=0;SRF=2285;SRP=4964.82;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:614:446,70,97:446:17252:70,97:2744,3821:-180.073,-88.6854,-1484.59,0,-1191.33,-1387.78 0|0:685:682,0,0:682:26472:0,0:0,0:0,-205.302,-2380.41,-205.302,-2380.41,-2380.41 0|0:713:676,36,0:676:26296:36,0:1419,0:0,-86.5542,-2236.86,-203.496,-2247.69,-2364.44 0|0:530:481,0,45:481:18619:0,45:0,1794:-3.16896,-147.964,-1677.33,0,-1529.6,-1516.05 dDocent_Contig_5284 1 . N G 74.0386 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=78;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:78:-7.40278,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_5285 209 . N G 74.0438 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=78;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:78:-7.4033,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_5286 12 . A T 1389.86 . AB=0.259542;ABP=68.8009;AC=2;AF=0.25;AN=8;AO=34;CIGAR=4M1X12M;DP=300;DPB=298.118;DPRA=0.89726;EPP=76.8404;EPPR=502.449;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1383;QR=8971;RO=230;RPL=0;RPP=76.8404;RPPR=502.449;RPR=34;RUN=1;SAF=34;SAP=76.8404;SAR=0;SRF=230;SRP=502.449;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:96:69,25,0:69:2707:25,0:943,0:-56.6255,0,-215.23,-77.3966,-222.755,-300.036 0|1:85:54,6,23:54:2093:6,23:206,937:-61.1098,-60.6536,-230.781,0,-155.28,-165.075 0|0:73:72,0,0:72:2822:0,0:0,0:0,-21.6742,-254.032,-21.6742,-254.032,-254.032 0|1:46:35,0,11:35:1349:0,11:0,446:-26.6482,-37.1843,-147.936,0,-111.152,-107.841 dDocent_Contig_5287 13 . T C 535.023 . AB=0.13986;ABP=325.208;AC=4;AF=0.5;AN=8;AO=40;CIGAR=1X;DP=286;DPB=286;DPRA=0;EPP=89.8692;EPPR=537.193;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=0.975;PAIREDR=0.995935;PAO=0;PQA=0;PQR=0;PRO=0;QA=1600;QR=9803;RO=246;RPL=0;RPP=89.8692;RPPR=537.193;RPR=40;RUN=1;SAF=40;SAP=89.8692;SAR=0;SRF=246;SRP=537.193;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:106:93,13:93:3708:13:525:-15.687,0,-301.817 0/1:93:84,9:84:3305:9:358:-4.58672,0,-269.504 0/1:51:36,15:36:1459:15:596:-38.6233,0,-116.202 0/1:36:33,3:33:1331:3:121:-0.442906,0,-109.213 dDocent_Contig_5288 13 . T C 290.516 . AB=0.222222;ABP=45.2334;AC=2;AF=0.25;AN=8;AO=16;CIGAR=1X;DP=118;DPB=118;DPRA=1.07143;EPP=37.7539;EPPR=224.5;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.95098;PAO=0;PQA=0;PQR=0;PRO=0;QA=644;QR=4141;RO=102;RPL=0;RPP=37.7539;RPPR=224.5;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=102;SRP=224.5;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:15,8:15:606:8:323:-22.5149,0,-47.9543 0/0:28:28,0:28:1144:0:0:0,-8.42884,-103.235 0/1:40:34,6:34:1390:6:240:-9.93425,0,-113.305 0/0:27:25,2:25:1001:2:81:0,-0.442076,-82.6925 dDocent_Contig_5289 13 . G T 49.9037 . AB=0.111111;ABP=85.7675;AC=1;AF=0.125;AN=8;AO=27;CIGAR=1X;DP=391;DPB=391;DPRA=0;EPP=61.6401;EPPR=791.255;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=0.991736;PAO=0;PQA=0;PQR=0;PRO=0;QA=1085;QR=14496;RO=363;RPL=0;RPP=61.6401;RPPR=791.255;RPR=27;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=363;SRP=791.255;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:133:124,9:124:4912:9:367:0,-6.64173,-408.576 0/0:109:105,4:105:4235:4:162:0,-17.8453,-366.127 0/0:86:79,7:79:3160:7:274:0,-0.863515,-259.434 0/1:63:55,7:55:2189:7:282:-6.68918,0,-178.112 dDocent_Contig_5290 36 . G A 39.458 . AB=0.119048;ABP=55.9529;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=126;DPB=126;DPRA=1.5;EPP=13.8677;EPPR=265.758;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=199;QR=4856;RO=121;RPL=0;RPP=13.8677;RPPR=265.758;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=121;SRP=265.758;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:51:51,0:51:2049:0:0:0,-15.3525,-184.593 0/1:42:37,5:37:1478:5:199:-5.64472,0,-120.615 0/0:19:19,0:19:770:0:0:0,-5.71957,-69.6209 0/0:14:14,0:14:559:0:0:0,-4.21442,-50.6529 dDocent_Contig_5291 15 . G A 9113.63 . AB=0.652561;ABP=93.7817;AC=4;AF=0.5;AN=8;AO=293;CIGAR=1X;DP=449;DPB=449;DPRA=0;EPP=639.252;EPPR=341.76;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.99359;PAO=0;PQA=0;PQR=0;PRO=0;QA=11706;QR=6227;RO=156;RPL=0;RPP=639.252;RPPR=341.76;RPR=293;RUN=1;SAF=293;SAP=639.252;SAR=0;SRF=156;SRP=341.76;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:190:90,100:90:3596:100:3994:-302.252,0,-266.459 0/1:141:39,102:39:1569:102:4080:-324.724,0,-98.996 0/1:77:18,59:18:703:59:2340:-187.583,0,-40.4141 0/1:41:9,32:9:359:32:1292:-104.203,0,-20.3289 dDocent_Contig_5292 107 . N G 1295.18 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=44;CIGAR=1X;DP=44;DPB=44;DPRA=0;EPP=98.5551;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1419;QR=0;RO=0;RPL=0;RPP=98.5551;RPPR=0;RPR=44;RUN=1;SAF=0;SAP=98.5551;SAR=44;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:59:-5.60359,-0.60206,0 1/1:19:0,19:0:0:19:625:-56.5607,-5.71957,0 1/1:17:0,17:0:0:17:561:-50.8047,-5.11751,0 1/1:6:0,6:0:0:6:174:-15.9462,-1.80618,0 dDocent_Contig_5293 7 . A T 2501.22 . AB=0.239175;ABP=289.595;AC=4;AF=0.5;AN=8;AO=116;CIGAR=1X1M;DP=485;DPB=485;DPRA=0;EPP=254.901;EPPR=734.797;GTI=0;LEN=1;MEANALT=2.5;MQM=58.6724;MQMR=58.9703;NS=4;NUMALT=2;ODDS=0;PAIRED=0.974138;PAIREDR=0.964392;PAO=0;PQA=0;PQR=0;PRO=0;QA=4393;QR=12911;RO=337;RPL=0;RPP=254.901;RPPR=734.797;RPR=116;RUN=1;SAF=116;SAP=254.901;SAR=0;SRF=337;SRP=734.797;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:139:92,0,42:92:3533:0,42:0,1571:-99.8688,-127.564,-413.162,0,-285.603,-272.96 0|1:125:95,4,25:95:3643:4,25:151,936:-47.9363,-64.156,-359.385,0,-284.097,-288.948 0|1:128:86,6,32:86:3280:6,32:226,1227:-74.832,-83.6056,-350.634,0,-251.733,-259.218 0|1:93:64,12,17:64:2455:12,17:451,659:-34.8833,-17.2047,-215.053,0,-164.522,-196.353 dDocent_Contig_5294 76 . G A 4648.71 . AB=0.521008;ABP=4.37888;AC=4;AF=0.5;AN=8;AO=186;CIGAR=1X;DP=357;DPB=357;DPRA=0;EPP=406.904;EPPR=374.332;GTI=0;LEN=1;MEANALT=1;MQM=59.6935;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.973118;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6433;QR=5939;RO=171;RPL=186;RPP=406.904;RPPR=374.332;RPR=0;RUN=1;SAF=186;SAP=406.904;SAR=0;SRF=171;SRP=374.332;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:140:56,84:56:1948:84:2899:-219.007,0,-133.447 0/1:109:56,53:56:1978:53:1853:-133.894,0,-145.485 0/1:81:38,43:38:1269:43:1500:-110.91,0,-90.1144 0/1:27:21,6:21:744:6:181:-8.45748,0,-59.1569 dDocent_Contig_5295 98 . N T 178.683 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=5;CIGAR=1X;DP=5;DPB=5;DPRA=0;EPP=13.8677;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=1.69407e-21;PAIRED=0.6;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=180;QR=0;RO=0;RPL=5;RPP=13.8677;RPPR=0;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:109:-10.1681,-0.90309,0 1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0 1/1:1:0,1:0:0:1:35:-3.49863,-0.30103,0 dDocent_Contig_5296 133 . T A 352.657 . AB=0.346939;ABP=12.9813;AC=2;AF=0.25;AN=8;AO=19;CIGAR=1X;DP=150;DPB=150;DPRA=0.610063;EPP=44.2683;EPPR=287.473;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=656;QR=4665;RO=131;RPL=0;RPP=44.2683;RPPR=287.473;RPR=19;RUN=1;SAF=0;SAP=44.2683;SAR=19;SRF=0;SRP=287.473;SRR=131;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:53:53,0:53:1897:0:0:0,-15.9546,-171.008 0/0:48:46,2:46:1633:2:70:0,-7.80204,-140.612 0/1:34:20,14:20:708:14:481:-33.3828,0,-53.8109 0/1:15:12,3:12:427:3:105:-5.28071,0,-34.2531 dDocent_Contig_5297 75 . C A 156.767 . AB=0.217391;ABP=34.9215;AC=2;AF=0.25;AN=8;AO=11;CIGAR=1X;DP=107;DPB=107;DPRA=1.28788;EPP=26.8965;EPPR=211.472;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=393;QR=3256;RO=96;RPL=11;RPP=26.8965;RPPR=211.472;RPR=0;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=96;SRP=211.472;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:39:38,1:38:1325:1:35:0,-8.24154,-116.054 0/1:29:22,7:22:743:7:250:-14.1169,0,-58.4543 0/0:22:22,0:22:736:0:0:0,-6.62266,-66.5498 0/1:17:14,3:14:452:3:108:-4.95766,0,-35.8711 dDocent_Contig_5299 107 . N G 103.54 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=104;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:69:-6.55266,-0.60206,0 1/1:1:0,1:0:0:1:35:-3.49863,-0.30103,0 dDocent_Contig_5300 15 . T C 181.984 . AB=0.14;ABP=115.579;AC=2;AF=0.25;AN=8;AO=17;CIGAR=1X;DP=199;DPB=199;DPRA=1.1087;EPP=39.9253;EPPR=398.218;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=678;QR=7259;RO=182;RPL=0;RPP=39.9253;RPPR=398.218;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=182;SRP=398.218;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:53:50,3:50:1960:3:122:0,-4.5821,-165.214 0/1:45:41,4:41:1648:4:155:-0.777124,0,-134.994 0/1:55:45,10:45:1822:10:401:-19.8909,0,-147.625 0/0:46:46,0:46:1829:0:0:0,-13.8474,-164.818 dDocent_Contig_5302 8 . C T 499.727 . AB=0.363636;ABP=11.8936;AC=2;AF=0.25;AN=8;AO=21;CIGAR=1X;DP=128;DPB=128;DPRA=0.389831;EPP=48.6112;EPPR=235.358;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=808;QR=4114;RO=107;RPL=0;RPP=48.6112;RPPR=235.358;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=107;SRP=235.358;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:59:59,0:59:2261:0:0:0,-17.7608,-203.705 0/1:39:22,17:22:849:17:652:-47.2762,0,-64.9915 0/1:16:13,3:13:497:3:117:-6.0939,0,-40.2596 0/0:14:13,1:13:507:1:39:0,-0.317855,-42.0829 dDocent_Contig_5303 12 . T G 49666.1 . AB=0.739765;ABP=1064.08;AC=4;AF=0.5;AN=8;AO=1572;CIGAR=1X;DP=2125;DPB=2125;DPRA=0;EPP=3416.56;EPPR=1201.66;GTI=0;LEN=1;MEANALT=1.25;MQM=59.923;MQMR=60;NS=4;NUMALT=1;ODDS=1.11022e-16;PAIRED=0.998728;PAIREDR=0.998188;PAO=0;PQA=0;PQR=0;PRO=0;QA=62436;QR=21171;RO=552;RPL=0;RPP=3416.56;RPPR=1201.66;RPR=1572;RUN=1;SAF=1572;SAP=3416.56;SAR=0;SRF=552;SRP=1201.66;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:600:170,429:170:6498:429:17025:-1349.99,0,-403.98 0/1:582:144,438:144:5543:438:17523:-1400.43,0,-323.617 0/1:496:127,369:127:4885:369:14551:-1159.08,0,-290.342 0/1:447:111,336:111:4245:336:13337:-1064.51,0,-247.543 dDocent_Contig_5304 9 . T C 5131.43 . AB=0.177906;ABP=2181;AC=3;AF=0.375;AN=8;AO=540;CIGAR=1X;DP=3408;DPB=3408;DPRA=0;EPP=1166.94;EPPR=6222.11;GTI=0;LEN=1;MEANALT=2;MQM=43.5519;MQMR=50.367;NS=4;NUMALT=1;ODDS=0;PAIRED=0.561111;PAIREDR=0.631634;PAO=0;PQA=0;PQR=0;PRO=0;QA=20745;QR=109548;RO=2864;RPL=0;RPP=1175.61;RPPR=6222.11;RPR=540;RUN=1;SAF=539;SAP=1166.94;SAR=1;SRF=2864;SRP=6222.11;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:819:700,117:700:26869:117:4492:-120.815,0,-1992.25 0/0:991:881,110:881:33647:110:4236:0,-4.13032,-2550.84 0/1:888:722,164:722:27584:164:6299:-147.631,0,-2096.51 0/1:710:561,149:561:21448:149:5718:-250.095,0,-1633.29 dDocent_Contig_5305 12 . G T 1832.25 . AB=0.105911;ABP=550.692;AC=0;AF=0;AN=8;AO=43;CIGAR=1X2M1X1M;DP=406;DPB=406;DPRA=0;EPP=96.3836;EPPR=537.193;GTI=0;LEN=1;MEANALT=4.5;MQM=50.9302;MQMR=60;NS=4;NUMALT=4;ODDS=0;PAIRED=0.953488;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1700;QR=9528;RO=246;RPL=0;RPP=96.3836;RPPR=537.193;RPR=43;RUN=1;SAF=43;SAP=96.3836;SAR=0;SRF=246;SRP=537.193;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:94:40,1,17,5,31:40:1567:1,17,5,31:39,666,194,1246:-90.4567,-99.2987,-227.845,-47.9212,-173.567,-171.649,-86.5629,-212.211,-160.831,-213.905,0,-125.651,-74.2713,-112.915,-119.519 0|0:119:77,6,9,2,25:77:2956:6,9,2,25:232,357,72,937:-52.616,-56.7785,-297.592,-48.6864,-272.29,-288.595,-69.9225,-293.526,-285.431,-311.938,0,-223.604,-215.51,-236.746,-235.093 0|0:120:80,4,10,5,21:80:3114:4,10,5,21:162,396,198,720:-32.2946,-43.1382,-297.861,-23.9009,-266.598,-276.823,-40.0765,-282.768,-263.536,-294.498,0,-242.665,-223.433,-239.603,-249.578 0|0:73:49,5,7,1,9:49:1891:5,7,1,9:199,281,40,366:-15.2553,-13.6487,-167.415,-6.98211,-145.896,-160.147,-26.7106,-165.625,-158.959,-181.682,0,-138.916,-132.249,-151.979,-152.565 dDocent_Contig_5307 9 . T C 18441.5 . AB=0.15194;ABP=979.508;AC=5;AF=0.625;AN=8;AO=141;CIGAR=2X2M;DP=928;DPB=928;DPRA=0;EPP=309.188;EPPR=432.962;GTI=0;LEN=1;MEANALT=3.5;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.0283688;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=5513;QR=7680;RO=198;RPL=0;RPP=309.188;RPPR=432.962;RPR=141;RUN=1;SAF=141;SAP=309.188;SAR=0;SRF=198;SRP=432.962;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:295:55,171,66:55:2141:171,66:6738,2580:-573.838,-36.1612,-160.637,-378.283,0,-534.367 0|1:259:51,186,22:51:1958:186,22:7189,866:-575.025,0,-104.711,-519.135,-89.4578,-673.221 0|1:223:55,139,26:55:2138:139,26:5473,1023:-433.425,0,-133.844,-365.829,-91.5315,-533.687 0|1:151:37,87,27:37:1443:87,27:3411,1044:-269.262,0,-92.4182,-194.654,-32.8621,-305.132 dDocent_Contig_5308 156 . T G 287.932 . AB=0.375;ABP=4.09604;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X2M1X1M1X;DP=11;DPB=11;DPRA=8;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=3;MQM=40;MQMR=0;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=108;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:1:0,0,1:0:0:0,1:0,34:-3.30271,-3.30271,-3.30271,-0.30103,-0.30103,0 0|0:1:0,0,1:0:0:0,1:0,37:-3.52359,-3.52359,-3.52359,-0.30103,-0.30103,0 0|0:1:0,0,1:0:0:0,1:0,35:-3.3807,-3.3807,-3.3807,-0.30103,-0.30103,0 1|0:8:0,3,4:0:0:3,4:108,148:-19.9806,-11.5638,-10.6607,-8.48408,0,-7.27996 dDocent_Contig_5309 40 . T C 72.4846 . AB=0.153846;ABP=43.6001;AC=2;AF=0.25;AN=8;AO=6;CIGAR=1X;DP=78;DPB=78;DPRA=1;EPP=4.45795;EPPR=142.467;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.75;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.944444;PAO=0;PQA=0;PQR=0;PRO=0;QA=234;QR=2844;RO=72;RPL=0;RPP=16.0391;RPPR=159.356;RPR=6;RUN=1;SAF=4;SAP=4.45795;SAR=2;SRF=70;SRP=142.467;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:25:25,0:25:988:0:0:0,-7.52575,-89.2193 0/1:22:20,2:20:806:2:82:-1.15702,0,-66.233 0/1:17:13,4:13:511:4:152:-8.93212,0,-41.2159 0/0:14:14,0:14:539:0:0:0,-4.21442,-48.8083 dDocent_Contig_5310 11 . G A 134.834 . AB=0.15;ABP=66.8516;AC=1;AF=0.125;AN=8;AO=19;CIGAR=1X;DP=232;DPB=232;DPRA=0;EPP=44.2683;EPPR=465.534;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.947368;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=766;QR=8486;RO=213;RPL=0;RPP=44.2683;RPPR=465.534;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=213;SRP=465.534;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:60:51,9:51:2028:9:362:-14.8813,0,-164.65 0/0:79:73,6:73:2923:6:241:0,-1.71618,-241.096 0/0:64:61,3:61:2418:3:123:0,-7.80113,-206.296 0/0:29:28,1:28:1117:1:40:0,-4.73419,-96.814 dDocent_Contig_5311 34 . A C 13903.9 . AB=0.740803;ABP=304.199;AC=4;AF=0.5;AN=8;AO=443;CIGAR=1X7M;DP=598;DPB=596;DPRA=0;EPP=964.973;EPPR=296.159;GTI=0;LEN=1;MEANALT=2.75;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=17481;QR=5183;RO=135;RPL=0;RPP=964.973;RPPR=296.159;RPR=443;RUN=1;SAF=443;SAP=964.973;SAR=0;SRF=135;SRP=296.159;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:174:31,13,129:31:1192:13,129:492,5113:-411.506,-380.514,-474.452,0,-57.5385,-59.0299 0|1:175:27,0,147:27:1047:0,147:0,5764:-465.95,-474.078,-560.095,0,-86.1403,-41.8889 0|1:147:46,0,100:46:1763:0,100:0,3994:-315.133,-328.98,-473.655,0,-144.693,-114.59 0|1:102:31,2,67:31:1181:2,67:82,2610:-205.201,-207.764,-304.028,0,-90.1423,-76.7435 dDocent_Contig_5312 11 . G A 19077.8 . AB=0.658798;ABP=207.147;AC=4;AF=0.5;AN=8;AO=614;CIGAR=1X;DP=932;DPB=932;DPRA=0;EPP=1336.29;EPPR=693.539;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=24407;QR=12658;RO=318;RPL=0;RPP=1336.29;RPPR=693.539;RPR=614;RUN=1;SAF=614;SAP=1336.29;SAR=0;SRF=318;SRP=693.539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:336:120,216:120:4784:216:8663:-678.015,0,-329.303 0/1:255:80,175:80:3167:175:6907:-544.568,0,-208.334 0/1:218:88,130:88:3513:130:5183:-400.716,0,-250.582 0/1:123:30,93:30:1194:93:3654:-291.876,0,-70.7051 dDocent_Contig_5313 57 . G T 504.921 . AB=0.185393;ABP=156.038;AC=4;AF=0.5;AN=8;AO=33;CIGAR=1X;DP=178;DPB=178;DPRA=0;EPP=74.6689;EPPR=317.874;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1223;QR=5595;RO=145;RPL=33;RPP=74.6689;RPPR=317.874;RPR=0;RUN=1;SAF=33;SAP=74.6689;SAR=0;SRF=145;SRP=317.874;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:27,9:27:1022:9:319:-18.2049,0,-81.4296 0/1:47:37,10:37:1396:10:364:-18.9519,0,-111.751 0/1:71:60,11:60:2344:11:425:-17.2298,0,-189.759 0/1:24:21,3:21:833:3:115:-3.50001,0,-68.0611 dDocent_Contig_5314 68 . A G 157.247 . AB=0.153846;ABP=70.66;AC=1;AF=0.125;AN=8;AO=14;CIGAR=1X;DP=284;DPB=284;DPRA=1.07299;EPP=33.4109;EPPR=589.308;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=568;QR=10650;RO=270;RPL=14;RPP=33.4109;RPPR=589.308;RPR=0;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=270;SRP=589.308;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:101:101,0:101:4000:0:0:0,-30.404,-359.999 0/1:65:55,10:55:2179:10:407:-17.4236,0,-176.73 0/0:82:78,4:78:3058:4:161:0,-9.80956,-260.435 0/0:36:36,0:36:1413:0:0:0,-10.8371,-127.424 dDocent_Contig_5315 22 . T C 16911.5 . AB=0.65233;ABP=171.708;AC=4;AF=0.5;AN=8;AO=546;CIGAR=1X;DP=837;DPB=837;DPRA=0;EPP=1188.63;EPPR=632.737;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=5.55112e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=21679;QR=11058;RO=290;RPL=0;RPP=1188.63;RPPR=632.737;RPR=546;RUN=1;SAF=546;SAP=1188.63;SAR=0;SRF=290;SRP=632.737;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:235:79,156:79:3051:156:6207:-487.635,0,-203.972 0/1:218:74,144:74:2835:144:5755:-452.132,0,-189.683 0/1:247:108,138:108:4044:138:5499:-420.437,0,-289.724 0/1:137:29,108:29:1128:108:4218:-338.348,0,-60.57 dDocent_Contig_5316 20 . C T 46.7225 . AB=0.1875;ABP=16.582;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=121;DPB=121;DPRA=2.1875;EPP=13.8677;EPPR=254.901;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.982759;PAO=0;PQA=0;PQR=0;PRO=0;QA=196;QR=4562;RO=116;RPL=0;RPP=13.8677;RPPR=254.901;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=116;SRP=254.901;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:56:55,1:55:2141:1:40:0,-12.862,-188.883 0/0:33:32,1:32:1276:1:36:0,-6.33571,-111.514 0/0:16:16,0:16:630:0:0:0,-4.81648,-57.0358 0/1:16:13,3:13:515:3:120:-6.37121,0,-41.8773 dDocent_Contig_5317 98 . N T 65.5375 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=69;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:69:-6.55266,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_5318 24 . C G 708.89 . AB=0.271028;ABP=51.7365;AC=1;AF=0.125;AN=8;AO=33;CIGAR=1X;DP=265;DPB=265;DPRA=0.757202;EPP=74.6689;EPPR=506.792;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1318;QR=9199;RO=232;RPL=0;RPP=74.6689;RPPR=506.792;RPR=33;RUN=1;SAF=33;SAP=74.6689;SAR=0;SRF=232;SRP=506.792;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:107:78,29:78:3121:29:1158:-72.287,0,-248.755 0/0:81:81,0:81:3176:0:0:0,-24.3834,-285.917 0/0:37:35,2:35:1396:2:79:0,-3.64087,-118.4 0/0:40:38,2:38:1506:2:81:0,-4.35547,-128.1 dDocent_Contig_5320 98 . N C 309.216 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=11;CIGAR=1X;DP=11;DPB=11;DPRA=0;EPP=26.8965;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=323;QR=0;RO=0;RPL=11;RPP=26.8965;RPPR=0;RPR=0;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1:0,1:0:0:1:25:-2.49986,-0.30103,0 1/1:4:0,4:0:0:4:94:-8.69295,-1.20412,0 1/1:2:0,2:0:0:2:66:-6.26831,-0.60206,0 1/1:4:0,4:0:0:4:138:-12.7604,-1.20412,0 dDocent_Contig_5322 44 . T C 15348.9 . AB=0.767036;ABP=393.837;AC=4;AF=0.5;AN=8;AO=484;CIGAR=2M1X1M;DP=631;DPB=625.5;DPRA=0;EPP=1054;EPPR=283.196;GTI=0;LEN=1;MEANALT=2.25;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=19221;QR=5239;RO=133;RPL=0;RPP=1054;RPPR=283.196;RPR=484;RUN=1;SAF=484;SAP=1054;SAR=0;SRF=133;SRP=291.816;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:240:64,0,175:64:2520:0,175:0,6965:-554.193,-573.459,-780.759,0,-207.304,-154.624 0|1:177:23,0,153:23:910:0,153:0,6023:-488.577,-495.501,-570.394,0,-74.9936,-28.9361 0|1:132:24,10,98:24:948:10,98:387,3894:-313.34,-288.781,-363.778,0,-46.2307,-48.5116 0|1:82:22,1,58:22:861:1,58:40,2339:-186.178,-189.505,-259.991,0,-67.4824,-53.3181 dDocent_Contig_5323 23 . A T 32.9212 . AB=0.0943396;ABP=154.522;AC=1;AF=0.125;AN=8;AO=13;CIGAR=1X;DP=290;DPB=290;DPRA=1.07143;EPP=31.2394;EPPR=604.508;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=529;QR=11051;RO=277;RPL=0;RPP=31.2394;RPPR=604.508;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=277;SRP=604.508;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:109:109,0:109:4384:0:0:0,-32.8123,-394.497 0/1:106:96,10:96:3813:10:406:-4.99085,0,-311.272 0/0:31:31,0:31:1223:0:0:0,-9.33193,-110.339 0/0:44:41,3:41:1631:3:123:0,-1.78053,-135.554 dDocent_Contig_5324 111 . T C 95.2108 . AB=0.0561056;ABP=521.591;AC=1;AF=0.125;AN=8;AO=17;CIGAR=1X6M;DP=385;DPB=386.143;DPRA=3.69512;EPP=39.9253;EPPR=726.111;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=4;NUMALT=4;ODDS=2.77556e-17;PAIRED=0.235294;PAIREDR=0.948949;PAO=4;PQA=139;PQR=0;PRO=0;QA=682;QR=13026;RO=333;RPL=17;RPP=39.9253;RPPR=726.111;RPR=0;RUN=1;SAF=0;SAP=39.9253;SAR=17;SRF=0;SRP=726.111;SRR=333;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:161:137,1,0,5,16:137:5372:1,0,5,16:39,0,199,633:-10.8497,-48.8852,-490.344,-52.0908,-490.645,-493.851,-35.7056,-474.26,-477.466,-475.961,0,-438.553,-441.759,-425.374,-436.942 0|1:142:126,0,0,12,4:126:4930:0,0,12,4:0,0,483,163:-1.83949,-39.7693,-445.08,-39.7693,-445.08,-445.08,0,-405.272,-405.272,-401.66,-26.3245,-431.632,-431.632,-391.824,-430.428 0|0:50:45,2,0,0,3:45:1771:2,0,0,3:79,0,0,122:0,-7.05001,-152.12,-13.5463,-152.722,-159.223,-13.5463,-152.722,-159.223,-159.223,-3.47618,-142.658,-149.159,-149.159,-148.256 0|0:32:25,2,2,0,1:25:953:2,2,0,1:79,75,0,40:0,-1.02909,-78.5826,-1.39365,-73.0433,-78.9405,-7.52575,-79.1846,-79.5426,-85.684,-4.23067,-75.889,-76.247,-82.3884,-82.0874 dDocent_Contig_5325 40 . C A 3352.07 . AB=0.549763;ABP=7.54878;AC=4;AF=0.5;AN=8;AO=116;CIGAR=1X;DP=211;DPB=211;DPRA=0;EPP=254.901;EPPR=209.3;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4500;QR=3702;RO=95;RPL=0;RPP=254.901;RPPR=209.3;RPR=116;RUN=1;SAF=116;SAP=254.901;SAR=0;SRF=95;SRP=209.3;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:42:20,22:20:773:22:845:-63.71,0,-57.2445 0/1:59:42,17:42:1649:17:633:-39.529,0,-130.879 0/1:57:16,41:16:604:41:1596:-126.725,0,-37.5272 0/1:53:17,36:17:676:36:1426:-112.642,0,-45.2128 dDocent_Contig_5326 25 . A C 209.431 . AB=0.115183;ABP=248.682;AC=1;AF=0.125;AN=8;AO=25;CIGAR=1X;DP=614;DPB=614;DPRA=1.20863;EPP=57.2971;EPPR=1282.01;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1008;QR=23441;RO=589;RPL=0;RPP=57.2971;RPPR=1282.01;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=589;SRP=1282.01;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:137:137,0:137:5462:0:0:0,-41.2411,-491.421 0/1:191:169,22:169:6751:22:887:-22.6421,0,-549.79 0/0:141:141,0:141:5628:0:0:0,-42.4452,-506.343 0/0:145:142,3:142:5600:3:121:0,-32.3692,-492.559 dDocent_Contig_5327 8 . A G 6340.63 . AB=0.123919;ABP=855.592;AC=0;AF=0;AN=8;AO=86;CIGAR=1X3M1X;DP=694;DPB=694;DPRA=0;EPP=189.757;EPPR=815.141;GTI=0;LEN=1;MEANALT=2.75;MQM=41.0349;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3296;QR=14523;RO=374;RPL=0;RPP=189.757;RPPR=815.141;RPR=86;RUN=1;SAF=86;SAP=189.757;SAR=0;SRF=374;SRP=815.141;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:231:107,43,80:107:4191:43,80:1650,3216:-229.319,-133.923,-465.598,0,-217.032,-320.559 0|0:203:102,14,86:102:3967:14,86:546,3401:-247.686,-236.263,-558.052,0,-283.909,-300.149 0|0:163:100,16,46:100:3884:16,46:621,1861:-121.88,-103.945,-418.26,0,-271.115,-305.31 0|0:97:65,13,19:65:2481:13,19:479,763:-42.5768,-24.9393,-224.544,0,-166.337,-197.835 dDocent_Contig_5328 8 . C A 5802.94 . AB=0.591781;ABP=29.7164;AC=4;AF=0.5;AN=8;AO=216;CIGAR=1X3M1X;DP=365;DPB=365;DPRA=0;EPP=472.048;EPPR=302.673;GTI=0;LEN=1;MEANALT=1.75;MQM=39.0278;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.992754;PAO=0;PQA=0;PQR=0;PRO=0;QA=8414;QR=5378;RO=138;RPL=0;RPP=472.048;RPPR=302.673;RPR=216;RUN=1;SAF=216;SAP=472.048;SAR=0;SRF=138;SRP=302.673;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:159:55,95,9:55:2143:95,9:3719,349:-263.885,0,-147.535,-251.765,-147.459,-425.198 0|1:68:20,47,1:20:770:47,1:1832,39:-130.924,0,-49.0634,-133.738,-60.0057,-196.662 0|1:81:45,35,1:45:1766:35,1:1353,39:-86.4254,0,-134.708,-96.7648,-142.038,-241.729 0|1:57:18,39,0:18:699:39,0:1510,0:-106.457,0,-46.0821,-111.875,-57.8223,-169.321 dDocent_Contig_5329 25 . A G 2534.1 . AB=0.384298;ABP=31.1497;AC=4;AF=0.5;AN=8;AO=93;CIGAR=1X;DP=242;DPB=242;DPRA=0;EPP=204.957;EPPR=326.56;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.978495;PAIREDR=0.993289;PAO=0;PQA=0;PQR=0;PRO=0;QA=3694;QR=5893;RO=149;RPL=0;RPP=204.957;RPPR=326.56;RPR=93;RUN=1;SAF=93;SAP=204.957;SAR=0;SRF=149;SRP=326.56;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:39:32,7:32:1279:7:273:-13.1936,0,-103.634 0/1:70:30,40:30:1204:40:1619:-124.863,0,-87.563 0/1:67:41,26:41:1623:26:1016:-71.5616,0,-126.144 0/1:66:46,20:46:1787:20:786:-51.1897,0,-141.196 dDocent_Contig_5330 98 . N G 1545.76 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=56;CIGAR=4X;DP=56;DPB=100;DPRA=0;EPP=124.613;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=39.8036;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=127;PQA=4126;PQR=0;PRO=0;QA=1795;QR=0;RO=0;RPL=56;RPP=124.613;RPPR=0;RPR=0;RUN=1;SAF=56;SAP=124.613;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:31:0,31:0:0:31:984:-86.2131,-9.33193,0 1|1:8:0,8:0:0:8:267:-20.0858,-2.40824,0 1|1:12:0,12:0:0:12:380:-33.3249,-3.61236,0 1|1:5:0,5:0:0:5:164:-14.35,-1.50515,0 dDocent_Contig_5332 98 . N G 143.503 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=7;CIGAR=1X;DP=7;DPB=7;DPRA=0;EPP=18.2106;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=28.2857;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=208;QR=0;RO=0;RPL=7;RPP=18.2106;RPPR=0;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:89:-5.42671,-0.90309,0 1/1:3:0,3:0:0:3:84:-5.09083,-0.90309,0 1/1:1:0,1:0:0:1:35:-3.3545,-0.30103,0 ./.:.:.:.:.:.:.:. dDocent_Contig_5336 27 . A G 95.0139 . AB=0.117647;ABP=197.293;AC=4;AF=0.5;AN=8;AO=18;CIGAR=1X1M1X1M1X3M2X1M2X;DP=153;DPB=153;DPRA=0;EPP=42.0968;EPPR=293.988;GTI=0;LEN=1;MEANALT=1.25;MQM=57.3333;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=693;QR=5292;RO=134;RPL=0;RPP=42.0968;RPPR=293.988;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=134;SRP=293.988;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:28:25,3:25:994:3:119:-2.66655,0,-81.3344 0|1:47:40,6:40:1579:6:220:-5.9206,0,-128.126 0|1:50:45,5:45:1770:5:196:-2.03086,0,-144.485 0|1:28:24,4:24:949:4:158:-6.17181,0,-77.2879 dDocent_Contig_5337 36 . G A 1335.89 . AB=0.311377;ABP=54.6185;AC=3;AF=0.375;AN=8;AO=55;CIGAR=1X;DP=207;DPB=207;DPRA=0;EPP=122.441;EPPR=333.074;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2213;QR=6122;RO=152;RPL=0;RPP=122.441;RPPR=333.074;RPR=55;RUN=1;SAF=55;SAP=122.441;SAR=0;SRF=152;SRP=333.074;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:73:47,26:47:1895:26:1034:-71.3735,0,-148.771 0/1:63:45,18:45:1817:18:736:-47.5975,0,-144.773 0/0:40:37,3:37:1495:3:121:0,-0.761002,-123.508 0/1:31:23,8:23:915:8:322:-20.0153,0,-73.3165 dDocent_Contig_5338 46 . C T 32.5984 . AB=0.142857;ABP=26.2761;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=64;DPB=64;DPRA=1.46512;EPP=9.52472;EPPR=135.47;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=121;QR=2458;RO=61;RPL=0;RPP=9.52472;RPPR=135.47;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=61;SRP=135.47;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:11,0:11:450:0:0:0,-3.31133,-40.8558 0/0:12:12,0:12:484:0:0:0,-3.61236,-43.9109 0/1:21:18,3:18:713:3:121:-4.95857,0,-58.1735 0/0:20:20,0:20:811:0:0:0,-6.0206,-73.3051 dDocent_Contig_5340 1 . N G 1811.34 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=59;CIGAR=1X;DP=59;DPB=59;DPRA=0;EPP=106.394;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=58.0169;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=0.0508475;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1994;QR=0;RO=0;RPL=0;RPP=131.127;RPPR=0;RPR=59;RUN=1;SAF=3;SAP=106.394;SAR=56;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:29:0,29:0:0:29:960:-86.6057,-8.72987,0 1/1:10:0,10:0:0:10:347:-31.5424,-3.0103,0 1/1:16:0,16:0:0:16:559:-50.5484,-4.81648,0 1/1:4:0,4:0:0:4:128:-11.8351,-1.20412,0 dDocent_Contig_5341 8 . C T 86.3625 . AB=0.109589;ABP=196.301;AC=2;AF=0.25;AN=8;AO=16;CIGAR=1X;DP=312;DPB=312;DPRA=0.879518;EPP=37.7539;EPPR=645.766;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=0.716216;PAO=0;PQA=0;PQR=0;PRO=0;QA=614;QR=11431;RO=296;RPL=0;RPP=37.7539;RPPR=645.766;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=296;SRP=645.766;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:101:90,11:90:3485:11:419:-7.65589,0,-283.368 0/0:98:98,0:98:3798:0:0:0,-29.5009,-341.917 0/0:68:68,0:68:2614:0:0:0,-20.47,-235.451 0/1:45:40,5:40:1534:5:195:-4.37785,0,-124.785 dDocent_Contig_5343 171 . T C 264.89 . AB=0.218182;ABP=40.9518;AC=1;AF=0.125;AN=8;AO=12;CIGAR=1X1M;DP=197;DPB=197;DPRA=1.16197;EPP=29.068;EPPR=396.047;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.994475;PAO=0;PQA=0;PQR=0;PRO=0;QA=481;QR=7236;RO=181;RPL=12;RPP=29.068;RPPR=396.047;RPR=0;RUN=1;SAF=0;SAP=29.068;SAR=12;SRF=0;SRP=396.047;SRR=181;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:55:39,4,12:39:1563:4,12:161,481:-27.8869,-26.3573,-153.923,0,-115.499,-125.156 0|0:33:33,0,0:33:1318:0,0:0,0:0,-9.93399,-118.884,-9.93399,-118.884,-118.884 0|0:83:83,0,0:83:3316:0,0:0,0:0,-24.9855,-298.497,-24.9855,-298.497,-298.497 0|0:26:26,0,0:26:1039:0,0:0,0:0,-7.82678,-93.8014,-7.82678,-93.8014,-93.8014 dDocent_Contig_5344 1 . N G 77.8076 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:82:-7.77968,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_5345 30 . C T 122.051 . AB=0.133333;ABP=90.593;AC=1;AF=0.125;AN=8;AO=13;CIGAR=1X;DP=147;DPB=147;DPRA=3.32353;EPP=31.2394;EPPR=293.988;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=518;QR=5422;RO=134;RPL=0;RPP=31.2394;RPPR=293.988;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=134;SRP=293.988;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:75:65,10:65:2628:10:398:-13.6025,0,-214.054 0/0:38:35,3:35:1417:3:120:0,-0.251238,-116.589 0/0:20:20,0:20:806:0:0:0,-6.0206,-72.8569 0/0:14:14,0:14:571:0:0:0,-4.21442,-51.7319 dDocent_Contig_5346 86 . T A 1955.49 . AB=0.595238;ABP=12.937;AC=4;AF=0.5;AN=8;AO=75;CIGAR=1X;DP=126;DPB=126;DPRA=0;EPP=165.871;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2662;QR=1832;RO=51;RPL=75;RPP=165.871;RPPR=113.755;RPR=0;RUN=1;SAF=75;SAP=165.871;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:42:19,23:19:682:23:823:-61.7482,0,-49.0627 0/1:40:13,27:13:465:27:960:-74.6707,0,-30.1451 0/1:30:13,17:13:466:17:594:-44.749,0,-33.2461 0/1:14:6,8:6:219:8:285:-21.7788,0,-15.8496 dDocent_Contig_5348 28 . T A 236.122 . AB=0.214286;ABP=42.7172;AC=2;AF=0.25;AN=8;AO=12;CIGAR=1X;DP=87;DPB=87;DPRA=1.80645;EPP=29.068;EPPR=165.871;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=479;QR=3022;RO=75;RPL=0;RPP=29.068;RPPR=165.871;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=75;SRP=165.871;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:42:32,10:32:1292:10:398:-23.5352,0,-103.899 0/0:14:14,0:14:562:0:0:0,-4.21442,-50.9206 0/1:14:12,2:12:487:2:81:-3.47131,0,-39.9667 0/0:17:17,0:17:681:0:0:0,-5.11751,-61.6188 dDocent_Contig_5349 28 . C T 1571.11 . AB=0.210024;ABP=309.032;AC=4;AF=0.5;AN=8;AO=88;CIGAR=1X;DP=419;DPB=419;DPRA=0;EPP=194.1;EPPR=721.768;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=2.77556e-17;PAIRED=1;PAIREDR=0.954683;PAO=0;PQA=0;PQR=0;PRO=0;QA=3210;QR=12788;RO=331;RPL=0;RPP=194.1;RPPR=721.768;RPR=88;RUN=1;SAF=88;SAP=194.1;SAR=0;SRF=331;SRP=721.768;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:125:93,32:93:3560:32:1148:-65.9844,0,-282.819 0/1:106:96,10:96:3688:10:368:-1.55691,0,-300.056 0/1:123:93,30:93:3631:30:1107:-62.8962,0,-289.806 0/1:65:49,16:49:1909:16:587:-33.5905,0,-152.451 dDocent_Contig_5350 26 . C G 683.617 . AB=0.223022;ABP=95.6338;AC=2;AF=0.25;AN=8;AO=31;CIGAR=1X;DP=318;DPB=318;DPRA=0.776536;EPP=70.3259;EPPR=624.051;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1256;QR=11590;RO=286;RPL=0;RPP=70.3259;RPPR=624.051;RPR=31;RUN=1;SAF=31;SAP=70.3259;SAR=0;SRF=286;SRP=624.051;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:86:86,0:86:3479:0:0:0,-25.8886,-313.127 0/1:80:65,14:65:2649:14:567:-27.1818,0,-214.322 0/0:93:93,0:93:3752:0:0:0,-27.9958,-337.674 0/1:59:42,17:42:1710:17:689:-44.5778,0,-136.351 dDocent_Contig_5351 14 . G A 4263.59 . AB=0.282258;ABP=258.333;AC=4;AF=0.5;AN=8;AO=175;CIGAR=1X;DP=620;DPB=620;DPRA=0;EPP=383.018;EPPR=969.316;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.98427;PAO=0;PQA=0;PQR=0;PRO=0;QA=6883;QR=17630;RO=445;RPL=0;RPP=383.018;RPPR=969.316;RPR=175;RUN=1;SAF=175;SAP=383.018;SAR=0;SRF=445;SRP=969.316;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:215:155,60:155:6137:60:2373:-149.016,0,-487.414 0/1:154:111,43:111:4414:43:1685:-105.533,0,-350.865 0/1:163:110,53:110:4361:53:2069:-137.334,0,-343.384 0/1:88:69,19:69:2718:19:756:-41.8746,0,-218.258 dDocent_Contig_5352 9 . T A 6085.5 . AB=0.792157;ABP=192.065;AC=4;AF=0.5;AN=8;AO=202;CIGAR=1X;DP=255;DPB=255;DPRA=0;EPP=441.648;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7686;QR=2050;RO=53;RPL=0;RPP=441.648;RPPR=118.098;RPR=202;RUN=1;SAF=202;SAP=441.648;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:130:28,102:28:1086:102:3887:-310.804,0,-58.9102 0/1:84:9,75:9:348:75:2857:-232.023,0,-6.39377 0/1:18:7,11:7:271:11:400:-30.9193,0,-19.3379 0/1:23:9,14:9:345:14:542:-42.2021,0,-24.4845 dDocent_Contig_5353 106 . N T 63.6413 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=2X1I1X;DP=2;DPB=2.66667;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=67;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:2:0,2:0:0:2:67:-6.36304,-0.60206,0 .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. dDocent_Contig_5354 9 . T A 4011.72 . AB=0.322709;ABP=140.064;AC=4;AF=0.5;AN=8;AO=162;CIGAR=1X;DP=502;DPB=502;DPRA=0;EPP=354.789;EPPR=732.625;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.970238;PAO=0;PQA=0;PQR=0;PRO=0;QA=6202;QR=12806;RO=336;RPL=0;RPP=354.789;RPPR=732.625;RPR=162;RUN=1;SAF=162;SAP=354.789;SAR=0;SRF=336;SRP=732.625;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:87:52,35:52:1990:35:1347:-95.3264,0,-153.147 0/1:144:96,45:96:3684:45:1724:-112.584,0,-288.839 0/1:125:74,50:74:2797:50:1907:-134.155,0,-214.191 0/1:146:114,32:114:4335:32:1224:-66.5046,0,-346.274 dDocent_Contig_5355 135 . T C 255.858 . AB=0.176923;ABP=120.871;AC=3;AF=0.375;AN=8;AO=24;CIGAR=1X;DP=152;DPB=152;DPRA=0;EPP=55.1256;EPPR=272.341;GTI=0;LEN=1;MEANALT=1;MQM=39.2083;MQMR=46.9453;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=844;QR=4522;RO=128;RPL=0;RPP=55.1256;RPPR=280.959;RPR=24;RUN=1;SAF=0;SAP=55.1256;SAR=24;SRF=1;SRP=272.341;SRR=127;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:50:39,11:39:1369:11:391:-17.8108,0,-107.276 0/1:45:40,5:40:1440:5:173:-1.86138,0,-115.156 0/1:35:28,7:28:984:7:245:-11.1004,0,-77.5908 0/0:22:21,1:21:729:1:35:0,-3.24196,-62.0069 dDocent_Contig_5356 33 . T G 3345.8 . AB=0.220798;ABP=478.334;AC=4;AF=0.5;AN=8;AO=155;CIGAR=1X;DP=702;DPB=702;DPRA=0;EPP=339.589;EPPR=1190.81;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6137;QR=21393;RO=547;RPL=0;RPP=339.589;RPPR=1190.81;RPR=155;RUN=1;SAF=155;SAP=339.589;SAR=0;SRF=547;SRP=1190.81;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:243:171,72:171:6688:72:2851:-183.555,0,-528.547 0/1:185:134,51:134:5264:51:2022:-126.48,0,-417.969 0/1:144:125,19:125:4840:19:763:-25.6435,0,-392.206 0/1:130:117,13:117:4601:13:501:-6.29881,0,-374.922 dDocent_Contig_5357 209 . N G 113.73 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=0;RO=0;RPL=3;RPP=9.52472;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:122:-11.3725,-0.90309,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_5358 26 . G A 38.0452 . AB=0.137931;ABP=36.0317;AC=1;AF=0.125;AN=8;AO=11;CIGAR=1X;DP=256;DPB=256;DPRA=1.08889;EPP=26.8965;EPPR=535.021;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.909091;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=426;QR=9707;RO=245;RPL=0;RPP=26.8965;RPPR=535.021;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=245;SRP=535.021;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:119:114,5:114:4530:5:193:0,-18.0818,-389.891 0/0:60:60,0:60:2311:0:0:0,-18.0618,-208.152 0/0:48:46,2:46:1859:2:79:0,-6.95181,-160.015 0/1:29:25,4:25:1007:4:154:-5.50342,0,-82.1951 dDocent_Contig_5359 7 . A G 470.639 . AB=0.188119;ABP=173.675;AC=3;AF=0.375;AN=8;AO=45;CIGAR=1X;DP=303;DPB=303;DPRA=0;EPP=100.727;EPPR=561.079;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=59.7899;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=0.6;PAIREDR=0.929961;PAO=0;PQA=0;PQR=0;PRO=0;QA=1494;QR=9779;RO=257;RPL=0;RPP=100.727;RPPR=561.079;RPR=45;RUN=1;SAF=45;SAP=100.727;SAR=0;SRF=257;SRP=561.079;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:101:94,7:94:3585:7:253:0,-7.28561,-299.277 0/1:100:76,23:76:2910:23:765:-39.2242,0,-232.138 0/1:62:53,9:53:2008:9:328:-11.203,0,-162.295 0/1:40:34,6:34:1276:6:148:-1.52105,0,-103.09 dDocent_Contig_5360 32 . A G 1033.77 . AB=0.200573;ABP=274.793;AC=2;AF=0.25;AN=8;AO=89;CIGAR=1X;DP=658;DPB=658;DPRA=1.54131;EPP=196.271;EPPR=1238.58;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.876404;PAIREDR=0.896309;PAO=0;PQA=0;PQR=0;PRO=0;QA=2958;QR=17694;RO=569;RPL=0;RPP=196.271;RPPR=1238.58;RPR=89;RUN=1;SAF=0;SAP=196.271;SAR=89;SRF=0;SRP=1238.58;SRR=569;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:141:94,47:94:2949:47:1571:-99.2353,0,-223.219 0/0:117:117,0:117:3657:0:0:0,-35.2205,-329.365 0/1:208:185,23:185:5656:23:776:-7.54,0,-446.616 0/0:192:173,19:173:5432:19:611:0,-2.50258,-433.784 dDocent_Contig_5361 33 . G T 3803.11 . AB=0.366925;ABP=62.5378;AC=4;AF=0.5;AN=8;AO=142;CIGAR=1X;DP=387;DPB=387;DPRA=0;EPP=311.359;EPPR=535.021;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5591;QR=9590;RO=245;RPL=0;RPP=311.359;RPPR=535.021;RPR=142;RUN=1;SAF=142;SAP=311.359;SAR=0;SRF=245;SRP=535.021;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:132:74,58:74:2884:58:2297:-167.16,0,-219.946 0/1:165:116,49:116:4570:49:1946:-125.671,0,-361.577 0/1:63:45,18:45:1747:18:704:-44.7184,0,-138.486 0/1:27:10,17:10:389:17:644:-50.1597,0,-27.2373 dDocent_Contig_5362 54 . A G 652.208 . AB=0.19883;ABP=137.73;AC=4;AF=0.5;AN=8;AO=34;CIGAR=1X;DP=171;DPB=171;DPRA=0;EPP=76.8404;EPPR=300.502;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1350;QR=5257;RO=137;RPL=34;RPP=76.8404;RPPR=300.502;RPR=0;RUN=1;SAF=34;SAP=76.8404;SAR=0;SRF=137;SRP=300.502;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:65:43,22:43:1675:22:875:-59.4923,0,-131.418 0/1:71:63,8:63:2449:8:319:-7.70299,0,-199.197 0/1:23:21,2:21:762:2:82:-0.855988,0,-61.9533 0/1:12:10,2:10:371:2:74:-3.41166,0,-30.1197 dDocent_Contig_5363 68 . G A 264.536 . AB=0.127778;ABP=219.627;AC=2;AF=0.25;AN=8;AO=44;CIGAR=1X;DP=475;DPB=475;DPRA=0;EPP=98.5551;EPPR=938.915;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1742;QR=16613;RO=431;RPL=44;RPP=98.5551;RPPR=938.915;RPR=0;RUN=1;SAF=44;SAP=98.5551;SAR=0;SRF=431;SRP=938.915;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:154:142,12:142:5472:12:475:0,-3.25898,-449.263 0/0:141:132,9:132:5051:9:358:0,-9.86259,-421.953 0/1:107:90,17:90:3494:17:667:-28.1509,0,-282.33 0/1:73:67,6:67:2596:6:242:-0.181759,0,-211.826 dDocent_Contig_5364 191 . G A 83.0503 . AB=0.192308;ABP=24.391;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=61;DPB=61;DPRA=2.22857;EPP=13.8677;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=194;QR=2197;RO=56;RPL=5;RPP=13.8677;RPPR=124.613;RPR=0;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=124.613;SRR=56;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:10:10,0:10:399:0:0:0,-3.0103,-36.2699 0/0:8:8,0:8:315:0:0:0,-2.40824,-28.7116 0/0:17:17,0:17:666:0:0:0,-5.11751,-60.2695 0/1:26:21,5:21:817:5:194:-10.004,0,-66.0192 dDocent_Contig_5366 18 . T A 459.803 . AB=0.125;ABP=472.048;AC=4;AF=0.5;AN=8;AO=48;CIGAR=1M1X1M;DP=384;DPB=405;DPRA=0;EPP=107.241;EPPR=687.024;GTI=0;LEN=1;MEANALT=1.75;MQM=45.4167;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.25;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1893;QR=12528;RO=315;RPL=0;RPP=107.241;RPPR=687.024;RPR=48;RUN=1;SAF=48;SAP=107.241;SAR=0;SRF=315;SRP=687.024;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:84:67,8,9:67:2657:8,9:299,342:-5.82314,-1.50513,-217.833,0,-194.244,-216.011 0|1:98:85,0,13:85:3390:0,13:0,518:-16.565,-42.1525,-321.333,0,-279.572,-275.659 0|1:111:95,6,10:95:3792:6,10:238,402:-2.14407,-11.1426,-321.661,0,-292.714,-309.295 0|1:91:68,7,16:68:2689:7,16:269,631:-28.7715,-27.1558,-246.346,0,-199.21,-216.475 dDocent_Contig_5367 8 . C G 194.209 . AB=0.158537;ABP=86.0559;AC=1;AF=0.125;AN=8;AO=21;CIGAR=1X2M1X1M1X;DP=345;DPB=344.833;DPRA=0;EPP=48.6112;EPPR=665.309;GTI=0;LEN=1;MEANALT=3.5;MQM=59.381;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.996721;PAO=0;PQA=0;PQR=0;PRO=0;QA=813;QR=11725;RO=305;RPL=0;RPP=48.6112;RPPR=665.309;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=305;SRP=665.309;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:119:106,3,6:106:4092:3,6:119,244:0,-22.1077,-357.272,-11.7586,-338.047,-346.037 0|0:92:86,3,0:86:3304:3,0:117,0:0,-16.2698,-286.591,-25.8886,-287.494,-297.111 0|1:82:67,13,0:67:2559:13,0:503,0:-21.1199,0,-206.031,-41.2889,-209.944,-251.237 0|0:52:46,2,0:46:1770:2,0:74,0:0,-7.79076,-152.529,-13.8474,-153.131,-159.185 dDocent_Contig_5368 38 . A C 265.241 . AB=0.101382;ABP=601.996;AC=1;AF=0.125;AN=8;AO=120;CIGAR=1X;DP=1439;DPB=1439;DPRA=0;EPP=263.587;EPPR=2858.5;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=59.9848;NS=4;NUMALT=1;ODDS=0;PAIRED=0.375;PAIREDR=0.554373;PAO=0;PQA=0;PQR=0;PRO=0;QA=4798;QR=52077;RO=1315;RPL=0;RPP=263.587;RPPR=2858.5;RPR=120;RUN=1;SAF=120;SAP=263.587;SAR=0;SRF=1315;SRP=2858.5;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:434:387,44:387:15384:44:1754:-27.9221,0,-1253.22 0/0:447:414,32:414:16391:32:1280:0,-19.0369,-1358.48 0/0:357:329,28:329:13054:28:1126:0,-5.84574,-1072.3 0/0:201:185,16:185:7248:16:638:0,-2.75412,-594.247 dDocent_Contig_5369 25 . G A 2079.37 . AB=0.334711;ABP=60.4377;AC=4;AF=0.5;AN=8;AO=81;CIGAR=1X;DP=242;DPB=242;DPRA=0;EPP=178.9;EPPR=352.617;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.987578;PAO=0;PQA=0;PQR=0;PRO=0;QA=3188;QR=6280;RO=161;RPL=0;RPP=178.9;RPPR=352.617;RPR=81;RUN=1;SAF=81;SAP=178.9;SAR=0;SRF=161;SRP=352.617;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:87:52,35:52:2014:35:1386:-98.8148,0,-155.274 0/1:68:43,25:43:1693:25:984:-68.3889,0,-132.141 0/1:44:32,12:32:1246:12:467:-29.1273,0,-99.1719 0/1:43:34,9:34:1327:9:351:-19.0036,0,-106.757 dDocent_Contig_5370 17 . G A 708.685 . AB=0.179039;ABP=207.916;AC=3;AF=0.375;AN=8;AO=44;CIGAR=1X;DP=294;DPB=294;DPRA=0;EPP=98.5551;EPPR=543.707;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1719;QR=9831;RO=249;RPL=0;RPP=98.5551;RPPR=543.707;RPR=44;RUN=1;SAF=44;SAP=98.5551;SAR=0;SRF=249;SRP=543.707;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:92:80,12:80:3159:12:480:-15.8566,0,-256.688 0/1:67:52,15:52:2066:15:576:-32.0052,0,-165.96 0/0:65:61,3:61:2401:3:117:0,-8.52842,-205.403 0/1:70:56,14:56:2205:14:546:-28.4047,0,-177.545 dDocent_Contig_5371 42 . T G 202.025 . AB=0.138462;ABP=150.604;AC=3;AF=0.375;AN=8;AO=18;CIGAR=1X;DP=141;DPB=141;DPRA=3.93939;EPP=42.0968;EPPR=270.101;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=707;QR=4910;RO=123;RPL=0;RPP=42.0968;RPPR=270.101;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=123;SRP=270.101;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:57:51,6:51:2024:6:232:-4.08514,0,-165.193 0/1:54:47,7:47:1884:7:284:-9.67837,0,-153.51 0/1:19:14,5:14:559:5:191:-11.8361,0,-44.9318 0/0:11:11,0:11:443:0:0:0,-3.31133,-40.2254 dDocent_Contig_5372 117 . C T 116.134 . AB=0.178571;ABP=53.2644;AC=2;AF=0.25;AN=8;AO=10;CIGAR=1X;DP=95;DPB=95;DPRA=1.4359;EPP=24.725;EPPR=187.585;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=346;QR=2887;RO=85;RPL=0;RPP=24.725;RPPR=187.585;RPR=10;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=187.585;SRR=85;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:17:17,0:17:589:0:0:0,-5.11751,-53.3367 0/1:32:25,7:25:852:7:244:-12.6671,0,-67.3602 0/1:24:21,3:21:712:3:102:-2.29208,0,-57.1724 0/0:22:22,0:22:734:0:0:0,-6.62266,-66.3726 dDocent_Contig_5373 98 . N A 145.722 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=6;CIGAR=1X;DP=6;DPB=6;DPRA=0;EPP=16.0391;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=8.76405;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=159;QR=0;RO=0;RPL=6;RPP=16.0391;RPPR=0;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:6:0,6:0:0:6:159:-14.5722,-1.80618,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_5374 72 . G A 329.518 . AB=0.355556;ABP=11.1654;AC=1;AF=0.125;AN=8;AO=17;CIGAR=1X;DP=150;DPB=150;DPRA=0.851852;EPP=39.9253;EPPR=291.816;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.941176;PAIREDR=0.924812;PAO=0;PQA=0;PQR=0;PRO=0;QA=566;QR=3968;RO=133;RPL=17;RPP=39.9253;RPPR=291.816;RPR=0;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=133;SRP=291.816;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:24:23,1:23:686:1:34:0,-3.82581,-58.6269 0/0:61:61,0:61:1824:0:0:0,-18.3628,-164.429 0/0:20:20,0:20:610:0:0:0,-6.0206,-55.1952 0/1:45:29,16:29:848:16:532:-34.6507,0,-63.0528 dDocent_Contig_5375 105 . N G 638.559 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=21;CIGAR=3X;DP=21;DPB=21;DPRA=0;EPP=48.6112;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=699;QR=0;RO=0;RPL=0;RPP=48.6112;RPPR=0;RPR=21;RUN=1;SAF=0;SAP=48.6112;SAR=21;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. 1|1:11:0,11:0:0:11:365:-33.1707,-3.31133,0 .:.:.:.:.:.:.:. 1|1:10:0,10:0:0:10:334:-30.3841,-3.0103,0 dDocent_Contig_5376 40 . G A 205.733 . AB=0.227273;ABP=31.4368;AC=2;AF=0.25;AN=8;AO=10;CIGAR=2X;DP=74;DPB=74;DPRA=1.46667;EPP=24.725;EPPR=141.985;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=405;QR=2528;RO=64;RPL=0;RPP=24.725;RPPR=141.985;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=64;SRP=141.985;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:24:24,0:24:953:0:0:0,-7.22472,-86.0727 0|1:26:22,4:22:853:4:164:-7.32312,0,-69.2504 0|1:18:12,6:12:481:6:241:-16.6481,0,-38.2216 0|0:6:6,0:6:241:0:0:0,-1.80618,-22.0667 dDocent_Contig_5377 9 . T C 408.314 . AB=0.290323;ABP=26.6864;AC=2;AF=0.25;AN=8;AO=18;CIGAR=1X;DP=115;DPB=115;DPRA=1.16981;EPP=42.0968;EPPR=213.643;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=687;QR=3753;RO=97;RPL=0;RPP=42.0968;RPPR=213.643;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=97;SRP=213.643;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:36:36,0:36:1395:0:0:0,-10.8371,-125.83 0/0:17:17,0:17:656:0:0:0,-5.11751,-59.377 0/1:42:26,16:26:1006:16:609:-42.5049,0,-78.2072 0/1:20:18,2:18:696:2:78:-1.38287,0,-56.9536 dDocent_Contig_5378 52 . T C 606.119 . AB=0.138365;ABP=364.24;AC=2;AF=0.25;AN=8;AO=64;CIGAR=1X;DP=640;DPB=640;DPRA=0;EPP=141.985;EPPR=1253.78;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2580;QR=22768;RO=576;RPL=64;RPP=141.985;RPPR=1253.78;RPR=0;RUN=1;SAF=64;SAP=141.985;SAR=0;SRF=576;SRP=1253.78;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:214:195,19:195:7675:19:765:-4.75011,0,-625.973 0/0:194:184,10:184:7310:10:409:0,-21.2292,-620.395 0/0:128:118,10:118:4668:10:403:0,-1.90288,-383.425 0/1:104:79,25:79:3115:25:1003:-59.2595,0,-249.134 dDocent_Contig_5381 26 . A G 48.9491 . AB=0.222222;ABP=15.074;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=104;DPB=104;DPRA=0.627907;EPP=11.6962;EPPR=220.158;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=130;QR=4009;RO=100;RPL=0;RPP=11.6962;RPPR=220.158;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=100;SRP=220.158;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:46:46,0:46:1850:0:0:0,-13.8474,-166.704 0/0:25:25,0:25:985:0:0:0,-7.52575,-88.944 0/1:18:14,4:14:566:4:130:-6.59388,0,-45.8642 0/0:15:15,0:15:608:0:0:0,-4.51545,-55.0579 dDocent_Contig_5382 107 . N T 235.773 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=8;CIGAR=1X;DP=8;DPB=8;DPRA=0;EPP=20.3821;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=1.69407e-21;PAIRED=0.125;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=248;QR=0;RO=0;RPL=0;RPP=20.3821;RPPR=0;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:4:0,4:0:0:4:137:-12.6682,-1.20412,0 1/1:3:0,3:0:0:3:105:-9.79616,-0.90309,0 ./.:.:.:.:.:.:.:. 1/1:1:0,1:0:0:1:6:-0.599999,-0.30103,0 dDocent_Contig_5383 24 . C T 2053.42 . AB=0.293919;ABP=112.2;AC=4;AF=0.5;AN=8;AO=87;CIGAR=1X;DP=296;DPB=296;DPRA=0;EPP=191.928;EPPR=456.848;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3340;QR=8420;RO=209;RPL=0;RPP=191.928;RPPR=456.848;RPR=87;RUN=1;SAF=87;SAP=191.928;SAR=0;SRF=209;SRP=456.848;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:76:54,22:54:2152:22:854:-54.2925,0,-170.975 0/1:108:73,35:73:2961:35:1337:-88.0855,0,-234.052 0/1:57:46,11:46:1856:11:408:-19.9033,0,-150.084 0/1:55:36,19:36:1451:19:741:-50.4583,0,-114.278 dDocent_Contig_5384 107 . N T 1663.03 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=55;CIGAR=1X;DP=55;DPB=55;DPRA=0;EPP=122.441;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1827;QR=0;RO=0;RPL=0;RPP=122.441;RPPR=0;RPR=55;RUN=1;SAF=0;SAP=122.441;SAR=55;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:31:0,31:0:0:31:1036:-93.5448,-9.33193,0 1/1:7:0,7:0:0:7:214:-19.5598,-2.10721,0 1/1:3:0,3:0:0:3:104:-9.70309,-0.90309,0 1/1:14:0,14:0:0:14:473:-42.8934,-4.21442,0 dDocent_Contig_5385 9 . T G 750.521 . AB=0.231707;ABP=105.546;AC=4;AF=0.5;AN=8;AO=38;CIGAR=1X;DP=164;DPB=164;DPRA=0;EPP=85.5263;EPPR=276.616;GTI=0;LEN=1;MEANALT=1;MQM=59.8158;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1449;QR=4870;RO=126;RPL=0;RPP=85.5263;RPPR=276.616;RPR=38;RUN=1;SAF=38;SAP=85.5263;SAR=0;SRF=126;SRP=276.616;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:61:50,11:50:1938:11:422:-19.9627,0,-156.297 0/1:42:28,14:28:1082:14:539:-36.2123,0,-85.041 0/1:30:25,5:25:967:5:190:-8.43584,0,-78.3125 0/1:31:23,8:23:883:8:298:-17.8391,0,-70.4567 dDocent_Contig_5386 56 . A G 633.867 . AB=0.25;ABP=68.1545;AC=2;AF=0.25;AN=8;AO=30;CIGAR=1X;DP=162;DPB=162;DPRA=2.85714;EPP=68.1545;EPPR=289.645;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.9;PAIREDR=0.886364;PAO=0;PQA=0;PQR=0;PRO=0;QA=1136;QR=5081;RO=132;RPL=30;RPP=68.1545;RPPR=289.645;RPR=0;RUN=1;SAF=30;SAP=68.1545;SAR=0;SRF=132;SRP=289.645;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:76:54,22:54:2025:22:825:-51.6795,0,-159.572 0/0:30:30,0:30:1176:0:0:0,-9.0309,-106.122 0/1:44:36,8:36:1403:8:311:-15.1051,0,-113.283 0/0:12:12,0:12:477:0:0:0,-3.61236,-43.2806 dDocent_Contig_5387 111 . T A 101.758 . AB=0.315789;ABP=8.61041;AC=1;AF=0.125;AN=8;AO=6;CIGAR=2X;DP=62;DPB=62;DPRA=1.32558;EPP=16.0391;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=192;QR=1932;RO=56;RPL=0;RPP=16.0391;RPPR=124.613;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=124.613;SRR=56;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:17:17,0:17:591:0:0:0,-5.11751,-53.5159 0|1:19:13,6:13:449:6:192:-11.8748,0,-35.0201 0|0:18:18,0:18:607:0:0:0,-5.41854,-54.9475 0|0:8:8,0:8:285:0:0:0,-2.40824,-25.9946 dDocent_Contig_5388 20 . T A 1342.2 . AB=0.223443;ABP=184.372;AC=3;AF=0.375;AN=8;AO=69;CIGAR=1X;DP=376;DPB=376;DPRA=0;EPP=152.842;EPPR=669.652;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2778;QR=12366;RO=307;RPL=0;RPP=152.842;RPPR=669.652;RPR=69;RUN=1;SAF=69;SAP=152.842;SAR=0;SRF=307;SRP=669.652;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:103:95,8:95:3824:8:324:0,-1.4769,-314.621 0/1:140:94,46:94:3761:46:1849:-124.468,0,-296.346 0/1:90:80,10:80:3230:10:407:-9.8979,0,-263.659 0/1:43:38,5:38:1551:5:198:-5.25218,0,-126.875 dDocent_Contig_5389 15 . A T 1190.57 . AB=0.254613;ABP=286.488;AC=3;AF=0.375;AN=8;AO=170;CIGAR=1X;DP=748;DPB=748;DPRA=0;EPP=372.161;EPPR=1247.26;GTI=0;LEN=1;MEANALT=1.5;MQM=23.7882;MQMR=36.4869;NS=4;NUMALT=1;ODDS=5.55112e-17;PAIRED=0.00588235;PAIREDR=0.0383944;PAO=0;PQA=0;PQR=0;PRO=0;QA=5694;QR=19672;RO=573;RPL=0;RPP=372.161;RPPR=1247.26;RPR=170;RUN=1;SAF=0;SAP=372.161;SAR=170;SRF=0;SRP=1247.26;SRR=573;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:206:174,32:174:5998:32:1055:0,-7.0743,-360.748 0/1:209:154,55:154:5269:55:1842:-43.8709,0,-283.458 0/1:220:158,61:158:5440:61:2052:-65.3525,0,-296.513 0/1:113:87,22:87:2965:22:745:-15.2314,0,-195.086 dDocent_Contig_5390 22 . G A 16497.8 . AB=0.712722;ABP=290.325;AC=4;AF=0.5;AN=8;AO=521;CIGAR=1X;DP=731;DPB=731;DPRA=0;EPP=1134.35;EPPR=459.02;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=20865;QR=8401;RO=210;RPL=0;RPP=1134.35;RPPR=459.02;RPR=521;RUN=1;SAF=521;SAP=1134.35;SAR=0;SRF=210;SRP=459.02;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:210:31,179:31:1228:179:7153:-580.2,0,-47.5755 0/1:190:103,87:103:4142:87:3482:-256.212,0,-315.541 0/1:171:59,112:59:2339:112:4481:-351.733,0,-159.194 0/1:160:17,143:17:692:143:5749:-469.031,0,-14.4434 dDocent_Contig_5392 79 . C T 214.502 . AB=0.175676;ABP=70.6194;AC=1;AF=0.125;AN=8;AO=14;CIGAR=1X;DP=312;DPB=312;DPRA=1.12245;EPP=33.4109;EPPR=650.109;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=527;QR=11844;RO=298;RPL=14;RPP=33.4109;RPPR=650.109;RPR=0;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=298;SRP=650.109;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:94:94,0:94:3737:0:0:0,-28.2968,-336.335 0/1:74:61,13:61:2439:13:501:-23.1492,0,-197.381 0/0:91:90,1:90:3577:1:26:0,-24.7939,-319.355 0/0:53:53,0:53:2091:0:0:0,-15.9546,-188.374 dDocent_Contig_5393 1 . N G 111.879 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=120;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:120:-11.1873,-0.90309,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_5394 174 . T C 79.6187 . AB=0.119403;ABP=87.3088;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=197;DPB=197;DPRA=1.54615;EPP=20.3821;EPPR=413.419;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=324;QR=7525;RO=189;RPL=8;RPP=20.3821;RPPR=413.419;RPR=0;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=413.419;SRR=189;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:67:59,8:59:2349:8:324:-9.35981,0,-191.395 0/0:60:60,0:60:2379:0:0:0,-18.0618,-214.255 0/0:40:40,0:40:1590:0:0:0,-12.0412,-143.336 0/0:30:30,0:30:1207:0:0:0,-9.0309,-108.904 dDocent_Contig_5395 19 . G A 17325.6 . AB=0.423239;ABP=75.6843;AC=4;AF=0.5;AN=8;AO=601;CIGAR=1X;DP=1420;DPB=1420;DPRA=0;EPP=1308.07;EPPR=1781.45;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=5.55112e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=24093;QR=32397;RO=819;RPL=0;RPP=1308.07;RPPR=1781.45;RPR=601;RUN=1;SAF=601;SAP=1308.07;SAR=0;SRF=819;SRP=1781.45;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:444:254,190:254:10079:190:7599:-549.852,0,-772.824 0/1:321:152,169:152:5987:169:6804:-515.403,0,-441.981 0/1:338:206,132:206:8122:132:5263:-371.779,0,-628.81 0/1:317:207,110:207:8209:110:4427:-302.92,0,-642.935 dDocent_Contig_5396 25 . A T 427.855 . AB=0.24359;ABP=47.5533;AC=2;AF=0.25;AN=8;AO=19;CIGAR=1X;DP=151;DPB=151;DPRA=1.06849;EPP=44.2683;EPPR=289.645;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.962121;PAO=0;PQA=0;PQR=0;PRO=0;QA=766;QR=5254;RO=132;RPL=0;RPP=44.2683;RPPR=289.645;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=132;SRP=289.645;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:51:40,11:40:1617:11:446:-25.1434,0,-130.404 0/0:44:44,0:44:1748:0:0:0,-13.2453,-157.539 0/0:29:29,0:29:1127:0:0:0,-8.72987,-101.712 0/1:27:19,8:19:762:8:320:-21.04,0,-60.7744 dDocent_Contig_5397 179 . C A 205.866 . AB=0.148148;ABP=119.144;AC=1;AF=0.125;AN=8;AO=16;CIGAR=1X;DP=284;DPB=284;DPRA=1.84091;EPP=37.7539;EPPR=82.7204;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=602;QR=10036;RO=267;RPL=16;RPP=37.7539;RPPR=82.7204;RPR=0;RUN=1;SAF=0;SAP=37.7539;SAR=16;SRF=0;SRP=582.793;SRR=267;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:108:92,16:92:3447:16:602:-21.9845,0,-277.81 0/0:82:81,0:81:3045:0:0:0,-24.3834,-273.989 0/0:46:46,0:46:1782:0:0:0,-13.8474,-160.604 0/0:48:48,0:48:1762:0:0:0,-14.4494,-158.81 dDocent_Contig_5398 23 . G C 3167.95 . AB=0.431579;ABP=14.5991;AC=3;AF=0.375;AN=8;AO=129;CIGAR=2X;DP=381;DPB=381;DPRA=0;EPP=283.13;EPPR=466.141;GTI=0;LEN=1;MEANALT=2;MQM=41.0853;MQMR=53.7336;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.995633;PAO=0;PQA=0;PQR=0;PRO=0;QA=5027;QR=8834;RO=229;RPL=0;RPP=283.13;RPPR=500.277;RPR=129;RUN=1;SAF=129;SAP=283.13;SAR=0;SRF=225;SRP=466.141;SRR=4;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:99:67,1,31:67:2533:1,31:40,1217:-72.9041,-90.045,-293.226,0,-200.453,-194.149 0|1:129:47,16,66:47:1833:16,66:640,2559:-180.412,-146.308,-288.824,0,-99.0856,-127.465 0|0:96:85,5,6:85:3327:5,6:202,234:0,-10.3642,-278.093,-7.72398,-261.732,-275.145 0|1:57:30,0,26:30:1141:0,26:0,1017:-68.876,-77.9069,-169.467,0,-91.5503,-83.7235 dDocent_Contig_5399 146 . A G 763.044 . AB=0.369048;ABP=15.5221;AC=3;AF=0.375;AN=8;AO=31;CIGAR=1X;DP=126;DPB=126;DPRA=0.666667;EPP=70.3259;EPPR=209.3;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1171;QR=3626;RO=95;RPL=0;RPP=70.3259;RPPR=209.3;RPR=31;RUN=1;SAF=0;SAP=70.3259;SAR=31;SRF=0;SRP=209.3;SRR=95;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:42:42,0:42:1633:0:0:0,-12.6433,-147.209 0/1:40:16,24:16:609:24:918:-70.8692,0,-43.0962 0/1:33:28,5:28:1031:5:204:-8.81004,0,-83.1382 0/1:11:9,2:9:353:2:49:-1.33851,0,-28.8204 dDocent_Contig_5400 37 . G A 34.077 . AB=0.111111;ABP=62.1226;AC=1;AF=0.125;AN=8;AO=14;CIGAR=1X;DP=314;DPB=314;DPRA=1.12162;EPP=33.4109;EPPR=654.452;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=555;QR=11900;RO=300;RPL=0;RPP=33.4109;RPPR=654.452;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=300;SRP=654.452;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:73:73,0:73:2927:0:0:0,-21.9752,-263.52 0/0:121:112,9:112:4412:9:352:0,-4.38677,-364.976 0/0:75:75,0:75:2974:0:0:0,-22.5772,-267.742 0/1:45:40,5:40:1587:5:203:-5.1065,0,-129.52 dDocent_Contig_5402 13 . C A 8506.52 . AB=0.54224;ABP=10.8984;AC=4;AF=0.5;AN=8;AO=276;CIGAR=1X2M1X3M;DP=509;DPB=509;DPRA=0;EPP=602.337;EPPR=287.473;GTI=0;LEN=1;MEANALT=2.75;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=1.11022e-16;PAIRED=1;PAIREDR=0.992366;PAO=0;PQA=0;PQR=0;PRO=0;QA=10907;QR=5175;RO=131;RPL=0;RPP=602.337;RPPR=287.473;RPR=276;RUN=1;SAF=276;SAP=602.337;SAR=0;SRF=131;SRP=287.473;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:192:47,108,35:47:1842:108,35:4260,1389:-336.327,0,-118.949,-236.14,-37.1229,-377.066 0|1:153:35,86,30:35:1392:86,30:3408,1198:-269.96,0,-88.7181,-181.846,-15.9566,-287.422 0|1:97:31,46,20:31:1228:46,20:1824,807:-140.802,0,-87.2225,-83.6107,-34.546,-178.664 0|1:67:18,36,13:18:713:36,13:1415,515:-110.961,0,-47.8438,-74.0038,-16.3057,-128.772 dDocent_Contig_5403 209 . N G 361.478 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=10;CIGAR=1X;DP=10;DPB=10;DPRA=0;EPP=24.725;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=390;QR=0;RO=0;RPL=10;RPP=24.725;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:9:0,9:0:0:9:351:-31.9491,-2.70927,0 ./.:.:.:.:.:.:.:. 1/1:1:0,1:0:0:1:39:-3.89656,-0.30103,0 ./.:.:.:.:.:.:.:. dDocent_Contig_5405 109 . T C 450.122 . AB=0.369231;ABP=12.665;AC=3;AF=0.375;AN=8;AO=24;CIGAR=1X;DP=74;DPB=74;DPRA=2.40741;EPP=55.1256;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=754;QR=1541;RO=50;RPL=0;RPP=55.1256;RPPR=111.584;RPR=24;RUN=1;SAF=0;SAP=55.1256;SAR=24;SRF=0;SRP=111.584;SRR=50;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:14,10:14:419:10:329:-22.7039,0,-30.7752 0/1:34:21,13:21:665:13:396:-25.6995,0,-49.917 0/1:7:6,1:6:192:1:29:-0.792446,0,-15.4885 0/0:9:9,0:9:265:0:0:0,-2.70927,-24.14 dDocent_Contig_5407 84 . T C 238.442 . AB=0.171717;ABP=95.6817;AC=2;AF=0.25;AN=8;AO=18;CIGAR=1X;DP=305;DPB=305;DPRA=0.9375;EPP=42.0968;EPPR=626.223;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=663;QR=10403;RO=287;RPL=18;RPP=42.0968;RPPR=626.223;RPR=0;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=287;SRP=626.223;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:80:80,0:80:2861:0:0:0,-24.0824,-257.707 0/0:126:125,1:125:4538:1:37:0,-34.2319,-404.863 0/1:51:44,7:44:1605:7:258:-8.22256,0,-129.383 0/1:48:38,10:38:1399:10:368:-19.0195,0,-111.756 dDocent_Contig_5408 149 . C T 63.8376 . AB=0.118644;ABP=77.5396;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X;DP=135;DPB=135;DPRA=1.87234;EPP=22.5536;EPPR=276.616;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=365;QR=4811;RO=126;RPL=0;RPP=22.5536;RPPR=276.616;RPR=9;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=276.616;SRR=126;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:25:25,0:25:951:0:0:0,-7.52575,-85.8737 0/0:22:22,0:22:838:0:0:0,-6.62266,-75.7213 0/1:59:52,7:52:1974:7:283:-8.08261,0,-160.089 0/0:29:27,2:27:1048:2:82:0,-0.950192,-86.8221 dDocent_Contig_5409 9 . T C 3224.67 . AB=0.316547;ABP=124.91;AC=3;AF=0.375;AN=8;AO=132;CIGAR=1X;DP=513;DPB=513;DPRA=1.44792;EPP=289.645;EPPR=828.17;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.992424;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5030;QR=14557;RO=380;RPL=0;RPP=289.645;RPPR=828.17;RPR=132;RUN=1;SAF=132;SAP=289.645;SAR=0;SRF=380;SRP=828.17;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:168:144,24:144:5503:24:915:-32.0945,0,-444.674 0/1:176:87,88:87:3340:88:3351:-248.657,0,-247.669 0/0:96:96,0:96:3686:0:0:0,-28.8989,-331.851 0/1:73:53,20:53:2028:20:764:-47.1127,0,-160.775 dDocent_Contig_5410 19 . G A 2392.94 . AB=0.0731707;ABP=67.8897;AC=0;AF=0;AN=8;AO=3;CIGAR=1X1M2D5M;DP=263;DPB=247;DPRA=0;EPP=9.52472;EPPR=237.529;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=5.55112e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=120;QR=4264;RO=108;RPL=0;RPP=9.52472;RPPR=237.529;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=108;SRP=237.529;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:98:49,0,23,25:49:1945:0,23,25:0,902,1015:-68.9711,-83.7216,-243.838,-9.55332,-169.668,-162.744,0,-160.124,-85.9527,-152.598 0|0:58:29,0,13,16:29:1151:0,13,16:0,489,645:-44.4479,-53.1778,-147.932,-13.128,-107.876,-103.962,0,-94.766,-54.7105,-89.9495 0|0:66:19,0,19,28:19:747:0,19,28:0,746,1114:-86.0018,-91.7214,-153.167,-30.3724,-91.8164,-86.0968,0,-61.4462,-0.095306,-53.0173 0|0:41:11,3,13,13:11:421:3,13,13:120,521,512:-47.1921,-40.6184,-74.2559,-7.5764,-32.2308,-38.2033,-8.3928,-33.0455,0,-39.0176 dDocent_Contig_5411 1 . N G 4637.88 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=202;CIGAR=1X;DP=202;DPB=202;DPRA=0;EPP=335.998;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=33.8317;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=7084;QR=0;RO=0;RPL=0;RPP=441.648;RPPR=0;RPR=202;RUN=1;SAF=13;SAP=335.998;SAR=189;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:30:0,30:0:0:30:1086:-68.3195,-9.0309,0 1/1:58:0,58:0:0:58:2042:-133.685,-17.4597,0 1/1:90:0,90:0:0:90:3112:-196.121,-27.0927,0 1/1:24:0,24:0:0:24:844:-65.0604,-7.22472,0 dDocent_Contig_5412 11 . G A 23506.8 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=1356;CIGAR=1X;DP=1385;DPB=1385;DPRA=0;EPP=1340.8;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1.25;MQM=20.3923;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=52962;QR=920;RO=23;RPL=0;RPP=2947.53;RPPR=52.9542;RPR=1356;RUN=1;SAF=1135;SAP=1340.8;SAR=221;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:454:1,453:1:41:453:17819:-826.609,-132.573,0 1/1:339:7,332:7:287:332:13057:-567.236,-75.8439,0 1/1:412:6,400:6:240:400:15535:-684.948,-100.542,0 1/1:180:9,171:9:352:171:6551:-271.187,-22.1454,0 dDocent_Contig_5413 43 . C T 2399.06 . AB=0.0320733;ABP=3323.59;AC=0;AF=0;AN=8;AO=56;CIGAR=11M1X1M;DP=1746;DPB=1795.85;DPRA=0;EPP=124.613;EPPR=2102.32;GTI=0;LEN=1;MEANALT=25;MQM=58.5536;MQMR=57.5264;NS=4;NUMALT=4;ODDS=0;PAIRED=0.946429;PAIREDR=0.758317;PAO=0;PQA=0;PQR=0;PRO=0;QA=2200;QR=40153;RO=1022;RPL=0;RPP=124.613;RPPR=2196.27;RPR=56;RUN=1;SAF=56;SAP=124.613;SAR=0;SRF=1011;SRP=2127.74;SRR=11;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:638:418,26,18,77,14:418:16469:26,18,77,14:839,378,2749,536:-80.2004,-140.977,-1473.32,-182.289,-1457.4,-1517.03,0,-1275.14,-1316.44,-1317.01,-162.059,-1437.18,-1478.49,-1296.22,-1498.02 0|0:475:275,38,10,42,25:275:10795:38,10,42,25:1014,210,1453,969:-25.3182,-32.9238,-894.069,-94.9115,-892.316,-964.485,0,-797.417,-859.403,-859.952,-29.0415,-826.46,-888.446,-793.546,-894.112 0|0:362:191,14,20,54,14:191:7465:14,20,54,14:453,423,1987,572:-91.3136,-113.76,-717.579,-122.164,-695.142,-724.168,0,-573.005,-581.402,-591.797,-101.601,-674.592,-682.987,-560.85,-705.424 0|0:271:138,19,27,36,3:138:5424:19,27,36,3:728,567,1230,123:-50.4718,-33.5485,-458.401,-56.4104,-428.51,-478.834,0,-372.122,-394.967,-419.739,-81.8778,-453.987,-476.828,-420.442,-511.537 dDocent_Contig_5414 16 . T C 43084 . AB=0.820731;ABP=2106.31;AC=4;AF=0.5;AN=8;AO=1932;CIGAR=1X;DP=2354;DPB=2354;DPRA=0;EPP=2710.27;EPPR=685.905;GTI=0;LEN=1;MEANALT=1.25;MQM=32.2433;MQMR=50.148;NS=4;NUMALT=1;ODDS=1.11022e-16;PAIRED=0.32971;PAIREDR=0.217184;PAO=0;PQA=0;PQR=0;PRO=0;QA=76829;QR=16706;RO=419;RPL=0;RPP=4198.29;RPPR=912.857;RPR=1932;RUN=1;SAF=1742;SAP=2710.27;SAR=190;SRF=391;SRP=685.905;SRR=28;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:759:148,611:148:5885:611:24412:-1367.28,0,-256.884 0/1:774:122,649:122:4909:649:25798:-1451.96,0,-111.701 0/1:492:94,398:94:3730:398:15790:-885.591,0,-151.288 0/1:329:55,274:55:2182:274:10829:-610.968,0,-81.1462 dDocent_Contig_5415 98 . N G 59.8472 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=63;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:63:-5.98364,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_5416 63 . G C 80.4357 . AB=0.285714;ABP=8.59409;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=103;DPB=103;DPRA=0.47191;EPP=11.6962;EPPR=217.986;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=151;QR=3722;RO=99;RPL=4;RPP=11.6962;RPPR=217.986;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=99;SRP=217.986;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:18:18,0:18:674:0:0:0,-5.41854,-60.9875 0/0:28:28,0:28:1041:0:0:0,-8.42884,-93.9946 0/0:43:43,0:43:1621:0:0:0,-12.9443,-146.158 0/1:14:10,4:10:386:4:151:-9.74254,0,-30.8825 dDocent_Contig_5418 12 . G A 60.4739 . AB=0.12963;ABP=67.3502;AC=2;AF=0.25;AN=8;AO=12;CIGAR=1X;DP=186;DPB=186;DPRA=0.754386;EPP=29.068;EPPR=380.846;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=481;QR=6987;RO=174;RPL=0;RPP=29.068;RPPR=380.846;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=174;SRP=380.846;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:57:57,0:57:2305:0:0:0,-17.1587,-207.604 0/0:75:70,5:70:2799:5:204:0,-3.83322,-233.263 0/1:27:24,3:24:964:3:123:-3.33698,0,-78.9317 0/1:27:23,4:23:919:4:154:-6.10337,0,-74.8836 dDocent_Contig_5419 12 . G A 23317.5 . AB=0.10354;ABP=2046.79;AC=0;AF=0;AN=8;AO=155;CIGAR=1X2M1D1M;DP=1497;DPB=1280.2;DPRA=0;EPP=339.589;EPPR=888.971;GTI=0;LEN=1;MEANALT=6.25;MQM=57.8968;MQMR=59.0613;NS=4;NUMALT=2;ODDS=0;PAIRED=0.696774;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=6185;QR=15804;RO=408;RPL=0;RPP=339.589;RPPR=888.971;RPR=155;RUN=1;SAF=155;SAP=339.589;SAR=0;SRF=408;SRP=888.971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:545:176,73,274:176:6810:73,274:2901,10512:-712.826,-530.119,-1059.43,0,-315.586,-468.786 0|0:411:94,38,257:94:3651:38,257:1516,9888:-700.868,-604.591,-891.16,0,-173.425,-220.632 0|0:284:35,26,210:35:1346:26,210:1049,8182:-608.84,-533.004,-635.657,0,-24.0992,-47.2613 0|0:257:103,18,125:103:3997:18,125:719,4729:-316.614,-289.483,-612.252,0,-270.032,-290.535 dDocent_Contig_5420 4 . T C 95.3945 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=3;CIGAR=4I1X2M1X;DP=46;DPB=49;DPRA=3.75;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQM=39;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=105;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:9:0,0:0:0:0:0:0,0,0 1|1:30:0,3:0:0:3:105:-9.06079,-0.90309,0 1|1:7:0,0:0:0:0:0:0,0,0 .:.:.:.:.:.:.:. dDocent_Contig_5421 9 . T C 2313.41 . AB=0.367347;ABP=40.4571;AC=4;AF=0.5;AN=8;AO=90;CIGAR=1X;DP=245;DPB=245;DPRA=0;EPP=198.443;EPPR=339.589;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3458;QR=5924;RO=155;RPL=0;RPP=198.443;RPPR=339.589;RPR=90;RUN=1;SAF=90;SAP=198.443;SAR=0;SRF=155;SRP=339.589;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:71:27,44:27:1022:44:1697:-131.615,0,-70.9113 0/1:78:60,18:60:2284:18:694:-39.3133,0,-182.291 0/1:50:41,9:41:1577:9:333:-15.2675,0,-127.147 0/1:46:27,19:27:1041:19:734:-52.5435,0,-80.1509 dDocent_Contig_5423 8 . C A 774.301 . AB=0.184426;ABP=214.07;AC=3;AF=0.375;AN=8;AO=50;CIGAR=1X;DP=316;DPB=316;DPRA=0;EPP=111.584;EPPR=576.279;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.94;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1917;QR=10142;RO=264;RPL=0;RPP=111.584;RPPR=576.279;RPR=50;RUN=1;SAF=50;SAP=111.584;SAR=0;SRF=264;SRP=576.279;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:104:87,17:87:3336:17:649:-27.439,0,-269.065 0/0:72:66,5:66:2554:5:191:0,-4.20336,-212.492 0/1:70:59,10:59:2253:10:388:-14.1175,0,-181.827 0/1:70:52,18:52:1999:18:689:-41.2715,0,-159.072 dDocent_Contig_5424 165 . T A 71.0878 . AB=0.1;ABP=197.574;AC=1;AF=0.125;AN=8;AO=18;CIGAR=1X;DP=445;DPB=445;DPRA=0.934473;EPP=42.0968;EPPR=878.846;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.5855;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.98829;PAO=0;PQA=0;PQR=0;PRO=0;QA=710;QR=16819;RO=427;RPL=18;RPP=42.0968;RPPR=878.846;RPR=0;RUN=1;SAF=0;SAP=42.0968;SAR=18;SRF=0;SRP=930.229;SRR=427;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:140:126,14:126:4938:14:559:-8.50672,0,-395.404 0/0:117:117,0:117:4624:0:0:0,-35.2205,-416.104 0/0:103:102,1:102:4014:1:41:0,-26.9115,-357.167 0/0:85:82,3:82:3243:3:110:0,-15.3281,-281.688 dDocent_Contig_5425 48 . C A 1336.96 . AB=0.259912;ABP=116.663;AC=4;AF=0.5;AN=8;AO=59;CIGAR=1X;DP=227;DPB=227;DPRA=0;EPP=131.127;EPPR=367.818;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2312;QR=6625;RO=168;RPL=0;RPP=131.127;RPPR=367.818;RPR=59;RUN=1;SAF=59;SAP=131.127;SAR=0;SRF=168;SRP=367.818;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:80:62,18:62:2458:18:688:-38.1534,0,-197.288 0/1:74:48,26:48:1861:26:1029:-70.6319,0,-145.417 0/1:35:27,8:27:1062:8:312:-17.9039,0,-85.3359 0/1:38:31,7:31:1244:7:283:-14.4044,0,-100.793 dDocent_Contig_5426 15 . G T 1051.09 . AB=0.330579;ABP=33.1776;AC=3;AF=0.375;AN=8;AO=40;CIGAR=1X;DP=150;DPB=150;DPRA=1.3908;EPP=89.8692;EPPR=241.872;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1621;QR=4382;RO=110;RPL=0;RPP=89.8692;RPPR=241.872;RPR=40;RUN=1;SAF=40;SAP=89.8692;SAR=0;SRF=110;SRP=241.872;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:47:37,10:37:1487:10:407:-22.8422,0,-119.922 0/1:45:19,26:19:753:26:1050:-81.2449,0,-54.5449 0/0:29:29,0:29:1165:0:0:0,-8.72987,-105.129 0/1:29:25,4:25:977:4:164:-6.42003,0,-79.4959 dDocent_Contig_5427 88 . A G 34.1881 . AB=0.113924;ABP=105.289;AC=1;AF=0.125;AN=8;AO=12;CIGAR=1X;DP=142;DPB=142;DPRA=4.46154;EPP=29.068;EPPR=285.302;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=419;QR=4452;RO=130;RPL=12;RPP=29.068;RPPR=285.302;RPR=0;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=130;SRP=285.302;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:79:70,9:70:2397:9:314:-4.81654,0,-192.214 0/0:14:14,0:14:487:0:0:0,-4.21442,-44.1611 0/0:37:34,3:34:1177:3:105:0,-1.34195,-96.4404 0/0:12:12,0:12:391:0:0:0,-3.61236,-35.5045 dDocent_Contig_5428 24 . T A 500.028 . AB=0.25;ABP=52.9542;AC=3;AF=0.375;AN=8;AO=24;CIGAR=1X;DP=133;DPB=133;DPRA=0;EPP=55.1256;EPPR=239.701;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.954128;PAO=0;PQA=0;PQR=0;PRO=0;QA=952;QR=4296;RO=109;RPL=0;RPP=55.1256;RPPR=239.701;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=109;SRP=239.701;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:22,4:22:866:4:161:-7.04849,0,-70.4282 0/0:41:40,1:40:1582:1:41:0,-8.24766,-138.519 0/1:46:35,11:35:1383:11:435:-25.6581,0,-110.886 0/1:20:12,8:12:465:8:315:-22.6942,0,-36.1777 dDocent_Contig_5429 1 . N G 76.8682 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:81:-7.68573,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_5431 21 . A G 369.88 . AB=0.18018;ABP=101.626;AC=2;AF=0.25;AN=8;AO=22;CIGAR=1X;DP=291;DPB=291;DPRA=0.495726;EPP=50.7827;EPPR=587.136;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=893;QR=10611;RO=269;RPL=0;RPP=50.7827;RPPR=587.136;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=269;SRP=587.136;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:117:117,0:117:4606:0:0:0,-35.2205,-414.482 0/1:62:49,13:49:1941:13:529:-29.2928,0,-156.224 0/0:63:61,2:61:2432:2:81:0,-11.2792,-211.338 0/1:49:42,7:42:1632:7:283:-11.0931,0,-132.358 dDocent_Contig_5432 120 . A G 1368.54 . AB=0.0610687;ABP=222.23;AC=0;AF=0;AN=8;AO=8;CIGAR=1X3M1X2M1X;DP=175;DPB=175;DPRA=0;EPP=20.3821;EPPR=228.843;GTI=0;LEN=1;MEANALT=2.66667;MQM=44.25;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=281;QR=3530;RO=104;RPL=0;RPP=20.3821;RPPR=228.843;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=228.843;SRR=104;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:63:45,3,14:45:1523:3,14:104,534:-30.4229,-39.2461,-161.801,0,-118.884,-119.41 0|0:43:17,1,24:17:569:1,24:37,883:-67.0814,-69.1796,-114.941,0,-43.0322,-38.8285 0|0:44:33,0,9:33:1125:0,9:0,322:-16.3704,-26.3044,-117.58,0,-91.3229,-88.6136 0|0:25:9,4,12:9:313:4,12:140,408:-30.3767,-21.7067,-45.956,0,-14.0713,-21.8365 dDocent_Contig_5433 15 . T C 23991.9 . AB=0.76572;ABP=607.71;AC=4;AF=0.5;AN=8;AO=755;CIGAR=1X;DP=986;DPB=986;DPRA=0;EPP=1642.47;EPPR=504.62;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=5.55112e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=30055;QR=9003;RO=231;RPL=0;RPP=1642.47;RPPR=504.62;RPR=755;RUN=1;SAF=755;SAP=1642.47;SAR=0;SRF=231;SRP=504.62;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:369:96,273:96:3729:273:10878:-867.209,0,-224.571 0/1:236:52,184:52:2035:184:7354:-590.445,0,-112.313 0/1:232:26,206:26:1014:206:8175:-665.46,0,-21.7204 0/1:149:57,92:57:2225:92:3648:-283.476,0,-155.578 dDocent_Contig_5434 28 . G A 195.05 . AB=0.230769;ABP=27.5646;AC=1;AF=0.125;AN=8;AO=10;CIGAR=1X;DP=136;DPB=136;DPRA=0.638554;EPP=24.725;EPPR=276.616;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=402;QR=4902;RO=126;RPL=0;RPP=24.725;RPPR=276.616;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=126;SRP=276.616;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:41:41,0:41:1601:0:0:0,-12.3422,-144.329 0/0:42:42,0:42:1668:0:0:0,-12.6433,-150.352 0/1:39:30,9:30:1137:9:362:-21.2033,0,-90.8718 0/0:14:13,1:13:496:1:40:0,-0.218741,-40.9834 dDocent_Contig_5435 107 . N T 297.858 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=10;CIGAR=1X;DP=10;DPB=10;DPRA=0;EPP=24.725;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0.9;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=321;QR=0;RO=0;RPL=0;RPP=24.725;RPPR=0;RPR=10;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:54:-5.12867,-0.60206,0 1/1:8:0,8:0:0:8:267:-24.3555,-2.40824,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_5436 13 . A G 133.912 . AB=0.21875;ABP=24.9965;AC=2;AF=0.25;AN=8;AO=7;CIGAR=1X;DP=62;DPB=62;DPRA=1.06667;EPP=10.7656;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.428571;PAIREDR=0.981818;PAO=0;PQA=0;PQR=0;PRO=0;QA=277;QR=2157;RO=55;RPL=0;RPP=18.2106;RPPR=122.441;RPR=7;RUN=1;SAF=6;SAP=10.7656;SAR=1;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:15:15,0:15:576:0:0:0,-4.51545,-52.1656 0/0:15:15,0:15:578:0:0:0,-4.51545,-52.3532 0/1:10:9,1:9:364:1:40:-0.985379,0,-30.1147 0/1:22:16,6:16:639:6:237:-15.0798,0,-51.2233 dDocent_Contig_5437 28 . G A 2610.45 . AB=0.203498;ABP=483.32;AC=4;AF=0.5;AN=8;AO=128;CIGAR=1X;DP=629;DPB=629;DPRA=0;EPP=280.959;EPPR=1088.75;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5075;QR=20010;RO=500;RPL=0;RPP=280.959;RPPR=1088.75;RPR=128;RUN=1;SAF=128;SAP=280.959;SAR=0;SRF=500;SRP=1088.75;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:211:156,54:156:6229:54:2158:-130.852,0,-496.812 0/1:174:151,23:151:6070:23:897:-28.6564,0,-493.673 0/1:158:128,30:128:5125:30:1175:-58.4601,0,-413.542 0/1:86:65,21:65:2586:21:845:-50.4742,0,-206.977 dDocent_Contig_5440 8 . C T 462.473 . AB=0.158416;ABP=207.731;AC=2;AF=0.25;AN=8;AO=36;CIGAR=1X;DP=416;DPB=416;DPRA=0;EPP=81.1833;EPPR=823.827;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1367;QR=14551;RO=378;RPL=0;RPP=81.1833;RPPR=823.827;RPR=36;RUN=1;SAF=36;SAP=81.1833;SAR=0;SRF=378;SRP=823.827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:116:98,17:98:3766:17:642:-23.104,0,-304.038 0/0:126:125,1:125:4809:1:35:0,-34.4311,-429.337 0/0:88:85,3:85:3279:3:111:0,-16.1379,-284.898 0/1:86:70,15:70:2697:15:579:-26.5413,0,-217.006 dDocent_Contig_5441 107 . N A 229.486 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=10;CIGAR=1X;DP=10;DPB=10;DPRA=0;EPP=24.725;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=26.7;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=330;QR=0;RO=0;RPL=0;RPP=24.725;RPPR=0;RPR=10;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1:0,1:0:0:1:31:-1.77909,-0.30103,0 1/1:4:0,4:0:0:4:135:-7.68718,-1.20412,0 1/1:3:0,3:0:0:3:104:-9.53939,-0.90309,0 1/1:2:0,2:0:0:2:60:-3.33801,-0.60206,0 dDocent_Contig_5443 22 . T C 119.923 . AB=0.545455;ABP=3.20771;AC=2;AF=0.25;AN=8;AO=6;CIGAR=1X;DP=18;DPB=18;DPRA=1.57143;EPP=3.0103;EPPR=5.9056;GTI=0;LEN=1;MEANALT=1;MQM=36.5;MQMR=38.9167;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.333333;PAO=0;PQA=0;PQR=0;PRO=0;QA=231;QR=440;RO=12;RPL=0;RPP=16.0391;RPPR=29.068;RPR=6;RUN=1;SAF=3;SAP=3.0103;SAR=3;SRF=4;SRP=5.9056;SRR=8;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:7:3,4:3:114:4:160:-10.572,0,-7.35569 0/0:4:4,0:4:148:0:0:0,-1.20412,-12.7333 0/0:3:3,0:3:108:0:0:0,-0.90309,-9.19734 0/1:4:2,2:2:70:2:71:-4.81781,0,-5.21921 dDocent_Contig_5444 1 . N G 30.3327 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=16;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=72;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:72:-3.03178,-0.60206,0 dDocent_Contig_5445 28 . G A 1695.67 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=265;CIGAR=1X3M;DP=325;DPB=325;DPRA=0;EPP=403.225;EPPR=122.441;GTI=0;LEN=1;MEANALT=1.5;MQM=11.2679;MQMR=7;NS=4;NUMALT=2;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2965;QR=2017;RO=55;RPL=22;RPP=403.225;RPPR=122.441;RPR=243;RUN=1;SAF=265;SAP=578.45;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:118:17,0,101:17:626:0,101:0,1059:-58.6323,-63.7498,-69.3355,-24.7475,-30.404,0 1|1:59:8,3,48:8:289:3,48:122,651:-42.6772,-44.1013,-45.8207,-11.8212,-13.4629,0 1|1:79:19,2,58:19:707:2,58:81,676:-35.8964,-35.5081,-41.1448,-11.4891,-11.3324,0 1|1:69:11,0,58:11:395:0,58:0,579:-31.7587,-35.07,-38.6696,-13.7897,-17.4597,0 dDocent_Contig_5446 1 . N G 167.562 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=5;CIGAR=1X;DP=5;DPB=5;DPRA=0;EPP=13.8677;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=175;QR=0;RO=0;RPL=0;RPP=13.8677;RPPR=0;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:4:0,4:0:0:4:138:-12.7561,-1.20412,0 1/1:1:0,1:0:0:1:37:-3.69783,-0.30103,0 ./.:.:.:.:.:.:.:. dDocent_Contig_5447 113 . A G 2088.91 . AB=0.0588235;ABP=60.4905;AC=3;AF=0.375;AN=8;AO=2;CIGAR=3X2M1X1M3I2M2D4M1X9M1I1M1X;DP=103;DPB=111.556;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=6;MQM=10;MQMR=0;NS=4;NUMALT=7;ODDS=0;PAIRED=1;PAIREDR=0;PAO=7;PQA=193.5;PQR=100.167;PRO=15.1667;QA=16;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:25:0,8,0,4,0,6,4,0:0:0:8,0,4,0,6,4,0:266,0,128,0,218,156,0:-37.4128,-17.7926,-15.3844,-37.4128,-17.7926,-37.4128,-27.2208,-7.61085,-27.2208,-26.0167,-37.4128,-17.7926,-37.4128,-27.2208,-37.4128,-19.612,0,-19.612,-9.42146,-19.612,-17.8058,-24.5819,-4.96336,-24.5819,-14.3896,-24.5819,-6.77695,-23.3778,-37.4128,-17.7926,-37.4128,-27.2208,-37.4128,-19.612,-24.5819,-37.4128 1|0:34:0,4,2,0,2,23,2,0:0:0:4,2,0,2,23,2,0:116,80,0,16,888,77,0:-81.3185,-72.8824,-71.6783,-74.7271,-66.2919,-74.125,-81.3185,-72.8824,-74.7271,-81.3185,-80.8534,-72.4212,-74.2632,-80.8534,-80.2513,-8.39358,0,-1.79654,-8.39358,-7.97699,-1.46989,-74.9961,-66.5611,-68.4046,-74.9961,-74.5323,-2.06792,-74.394,-81.3185,-72.8824,-74.7271,-81.3185,-80.8534,-8.39358,-74.9961,-81.3185 0|0:30:0,3,5,0,0,16,2,2:0:0:3,5,0,0,16,2,2:94,189,0,0,556,63,79:-58.797,-51.8331,-50.93,-43.3115,-36.3477,-41.8063,-58.797,-51.8331,-43.3115,-58.797,-58.797,-51.8331,-43.3115,-58.797,-58.797,-15.4976,-8.54213,0,-15.4976,-15.4976,-10.6811,-54.0056,-47.0424,-38.52,-54.0056,-54.0056,-10.7104,-53.4035,-52.292,-45.328,-36.8049,-52.292,-52.292,-8.98772,-47.5005,-51.6899 1|0:14:0,0,0,4,0,9,0,0:0:0:0,0,4,0,9,0,0:0,0,137,0,337,0,0:-38.1988,-38.1988,-38.1988,-38.1988,-38.1988,-38.1988,-27.2446,-27.2446,-27.2446,-26.0405,-38.1988,-38.1988,-38.1988,-27.2446,-38.1988,-10.8669,-10.8669,-10.8669,0,-10.8669,-8.15764,-38.1988,-38.1988,-38.1988,-27.2446,-38.1988,-10.8669,-38.1988,-38.1988,-38.1988,-38.1988,-27.2446,-38.1988,-10.8669,-38.1988,-38.1988 dDocent_Contig_5449 44 . C A 29955.9 . AB=0.635082;ABP=362.628;AC=4;AF=0.5;AN=8;AO=1441;CIGAR=1X3M;DP=2269;DPB=2269;DPRA=0;EPP=3063;EPPR=1401.7;GTI=0;LEN=1;MEANALT=4.5;MQM=34.3789;MQMR=58.3319;NS=4;NUMALT=2;ODDS=0;PAIRED=0.918112;PAIREDR=0.922747;PAO=0;PQA=0;PQR=0;PRO=0;QA=42933;QR=26541;RO=699;RPL=15;RPP=3003.17;RPPR=1503.55;RPR=1426;RUN=1;SAF=1434;SAP=3071.6;SAR=7;SRF=685;SRP=1401.7;SRR=14;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:677:227,10,421:227:8646:10,421:382,12286:-842.127,-898.048,-1603.33,0,-695.941,-581.614 0|1:703:186,39,458:186:7092:39,458:1481,13858:-988.287,-933.609,-1502.98,0,-470.462,-443.251 0|1:458:147,7,294:147:5564:7,294:267,8832:-618.137,-641.578,-1089,0,-428.702,-361.008 0|1:431:139,9,268:139:5239:9,268:350,7957:-554.438,-571.284,-997.817,0,-404.245,-348.562 dDocent_Contig_5450 1 . N G 362.284 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=16;CIGAR=1X;DP=16;DPB=16;DPRA=0;EPP=16.582;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=32.9375;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=0.1875;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=501;QR=0;RO=0;RPL=0;RPP=37.7539;RPPR=0;RPR=16;RUN=1;SAF=3;SAP=16.582;SAR=13;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1:0,1:0:0:1:17:-1.66744,-0.30103,0 1/1:3:0,3:0:0:3:104:-9.59277,-0.90309,0 1/1:11:0,11:0:0:11:345:-22.7651,-3.31133,0 1/1:1:0,1:0:0:1:35:-1.5947,-0.30103,0 dDocent_Contig_5451 1 . N G 351.513 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=10;CIGAR=1X;DP=10;DPB=10;DPRA=0;EPP=24.725;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0.2;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=379;QR=0;RO=0;RPL=0;RPP=24.725;RPPR=0;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:7:0,7:0:0:7:260:-23.755,-2.10721,0 1/1:3:0,3:0:0:3:119:-11.095,-0.90309,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_5452 57 . T C 2670.95 . AB=0.397933;ABP=38.0288;AC=4;AF=0.5;AN=8;AO=154;CIGAR=1X;DP=387;DPB=387;DPRA=0;EPP=337.417;EPPR=508.963;GTI=0;LEN=1;MEANALT=1;MQM=47.8442;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.746753;PAIREDR=0.995708;PAO=0;PQA=0;PQR=0;PRO=0;QA=5189;QR=7844;RO=233;RPL=154;RPP=337.417;RPPR=508.963;RPR=0;RUN=1;SAF=154;SAP=337.417;SAR=0;SRF=233;SRP=508.963;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:107:54,53:54:1789:53:1805:-106.428,0,-129.076 0/1:117:81,36:81:2729:36:1226:-58.6227,0,-210.643 0/1:107:71,36:71:2391:36:1206:-54.9347,0,-183.245 0/1:56:27,29:27:935:29:952:-54.5075,0,-67.6074 dDocent_Contig_5453 131 . C T 94.0363 . AB=0.24;ABP=17.6895;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=123;DPB=123;DPRA=0.765306;EPP=16.0391;EPPR=257.073;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.982906;PAO=0;PQA=0;PQR=0;PRO=0;QA=200;QR=3688;RO=117;RPL=0;RPP=16.0391;RPPR=257.073;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=257.073;SRR=117;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:19,6:19:625:6:200:-10.8016,0,-49.0329 0/0:44:44,0:44:1361:0:0:0,-13.2453,-122.763 0/0:39:39,0:39:1236:0:0:0,-11.7402,-111.518 0/0:15:15,0:15:466:0:0:0,-4.51545,-42.2381 dDocent_Contig_5454 9 . G A 75.0872 . AB=0.116505;ABP=134.585;AC=3;AF=0.375;AN=8;AO=13;CIGAR=1X;DP=116;DPB=116;DPRA=0;EPP=31.2394;EPPR=218.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=0.961165;PAO=0;PQA=0;PQR=0;PRO=0;QA=495;QR=3806;RO=103;RPL=0;RPP=31.2394;RPPR=226.672;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=102;SRP=218.07;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:43:38,5:38:1408:5:193:-4.7972,0,-114.055 0/1:33:30,3:30:1112:3:111:-0.419498,0,-90.4458 0/1:27:23,4:23:838:4:154:-6.10578,0,-67.6032 0/0:13:12,1:12:448:1:37:0,-0.215561,-36.9647 dDocent_Contig_5455 107 . N C 151.746 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=5;CIGAR=1X;DP=5;DPB=5;DPRA=0;EPP=13.8677;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=158;QR=0;RO=0;RPL=0;RPP=13.8677;RPPR=0;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1:0,1:0:0:1:35:-3.49863,-0.30103,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:4:0,4:0:0:4:123:-11.3737,-1.20412,0 dDocent_Contig_5456 1 . N G 96.8318 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=36.3333;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=105;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:70:-5.97773,-0.60206,0 ./.:.:.:.:.:.:.:. 1/1:1:0,1:0:0:1:35:-3.4027,-0.30103,0 ./.:.:.:.:.:.:.:. dDocent_Contig_5457 23 . G A 178.717 . AB=0.104683;ABP=495.743;AC=1;AF=0.125;AN=8;AO=94;CIGAR=1X;DP=1439;DPB=1439;DPRA=0;EPP=158.34;EPPR=2553.96;GTI=0;LEN=1;MEANALT=1;MQM=54.234;MQMR=59.5948;NS=4;NUMALT=1;ODDS=5.55112e-17;PAIRED=0.191489;PAIREDR=0.15539;PAO=0;PQA=0;PQR=0;PRO=0;QA=3645;QR=52529;RO=1345;RPL=0;RPP=207.129;RPPR=2906.29;RPR=94;RUN=1;SAF=88;SAP=158.34;SAR=6;SRF=1301;SRP=2553.96;SRR=44;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:468:434,34:434:16974:34:1331:0,-21.5769,-1401.33 0/0:441:426,15:426:16592:15:595:0,-81.4663,-1438.77 0/1:363:325,38:325:12740:38:1447:-19.5706,0,-1036.16 0/0:167:160,7:160:6223:7:272:0,-25.5562,-532.76 dDocent_Contig_5458 5 . T A 920.943 . AB=0.114286;ABP=48.239;AC=3;AF=0.5;AN=6;AO=4;CIGAR=1X6I3M1X;DP=35;DPB=75.8;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=2.33333;MQM=55.25;MQMR=0;NS=3;NUMALT=2;ODDS=0;PAIRED=0.25;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=137;QR=0;RO=0;RPL=0;RPP=11.6962;RPPR=0;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:11:0,1,10:0:0:1,10:36,335:-30.3554,-27.4157,-27.1146,-3.29724,0,-0.286945 1|0:5:0,1,4:0:0:1,4:36,137:-14.4049,-11.464,-11.163,-3.29724,0,-2.09312 1|0:19:0,2,16:0:0:2,16:65,547:-49.3351,-44.1271,-43.5251,-5.19889,0,-0.382411 .:.:.:.:.:.:.:. dDocent_Contig_5460 78 . G C 803.096 . AB=0.030303;ABP=508.898;AC=0;AF=0;AN=8;AO=8;CIGAR=2X3M;DP=562;DPB=574;DPRA=0;EPP=20.3821;EPPR=649.627;GTI=0;LEN=1;MEANALT=8;MQM=49.875;MQMR=58.9149;NS=4;NUMALT=5;ODDS=5.55112e-17;PAIRED=0;PAIREDR=0.267477;PAO=0;PQA=0;PQR=0;PRO=0;QA=243;QR=10946;RO=329;RPL=0;RPP=20.3821;RPPR=399.189;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=287;SRP=399.189;SRR=42;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:144:101,5,7,0,19,12:101:3369:5,7,0,19,12:146,57,0,413,399:-1.93535,-30.4096,-286.121,-30.9874,-286.259,-286.089,-32.3394,-287.626,-288.196,-289.564,-5.63103,-260.929,-261.5,-262.865,-257.146,0,-255.335,-255.906,-257.273,-230.575,-253.661 0|0:154:88,8,7,0,26,24:88:2935:8,7,0,26,24:272,49,0,598,824:-40.4866,-62.933,-298.155,-66.3047,-299.882,-301.826,-66.9772,-300.564,-303.933,-304.616,-26.0752,-259.671,-263.04,-263.719,-255.892,0,-233.645,-237.015,-237.696,-196.801,-230.471 0|0:202:121,11,14,2,33,16:121:3994:11,14,2,33,16:369,137,51,819,530:-20.9376,-49.9419,-369.623,-52.6059,-368.168,-371.377,-53.9145,-369.488,-372.145,-376.311,0,-315.602,-318.26,-319.578,-313.09,-14.4618,-330.062,-332.719,-334.04,-280.151,-332.67 0|0:62:19,6,2,6,18,9:19:648:6,2,6,18,9:208,13,192,431,310:-24.1986,-26.8934,-77.6965,-29.808,-79.3922,-81.8179,-14.4406,-64.0349,-66.9511,-65.2564,0,-49.605,-52.5143,-37.1532,-47.2036,-4.70817,-54.3106,-57.2267,-41.8658,-27.4265,-54.6287 dDocent_Contig_5461 21 . T A 5769.89 . AB=0.142561;ABP=3210.14;AC=4;AF=0.5;AN=8;AO=412;CIGAR=1M5I1M1X1M4D1M;DP=2890;DPB=2935.44;DPRA=0;EPP=897.657;EPPR=5227.57;GTI=0;LEN=1;MEANALT=9.5;MQM=59.585;MQMR=59.4742;NS=4;NUMALT=1;ODDS=0;PAIRED=0.609223;PAIREDR=0.136326;PAO=0;PQA=0;PQR=0;PRO=0;QA=15939;QR=93871;RO=2406;RPL=0;RPP=897.657;RPPR=5227.57;RPR=412;RUN=1;SAF=412;SAP=897.657;SAR=0;SRF=2406;SRP=5227.57;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:828:694,116:694:27092:116:4488:-159.673,0,-2190.53 0|1:762:630,114:630:24611:114:4429:-174.241,0,-1986.99 0|1:791:650,121:650:25258:121:4639:-184.943,0,-2037.64 0|1:509:432,61:432:16910:61:2383:-65.5296,0,-1371.45 dDocent_Contig_5462 19 . A C 1571.52 . AB=0.121488;ABP=1641.93;AC=4;AF=0.5;AN=8;AO=160;CIGAR=1X;DP=1317;DPB=1317;DPRA=0;EPP=261.47;EPPR=2145.6;GTI=0;LEN=1;MEANALT=1.25;MQM=59.9375;MQMR=59.3728;NS=4;NUMALT=1;ODDS=5.55112e-17;PAIRED=0.30625;PAIREDR=0.270761;PAO=0;PQA=0;PQR=0;PRO=0;QA=6222;QR=44488;RO=1156;RPL=0;RPP=350.446;RPPR=2513.23;RPR=160;RUN=1;SAF=149;SAP=261.47;SAR=11;SRF=1112;SRP=2145.6;SRR=44;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:372:330,42:330:12761:42:1629:-34.8575,0,-1030.51 0/1:368:318,49:318:12301:49:1942:-64.259,0,-981.083 0/1:326:285,41:285:10883:41:1572:-43.5865,0,-879.17 0/1:251:223,28:223:8543:28:1079:-21.8472,0,-689.726 dDocent_Contig_5464 1 . N G 76.8682 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:81:-7.68573,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_5465 25 . G A 36024.4 . AB=0.499522;ABP=3.01652;AC=4;AF=0.5;AN=8;AO=1569;CIGAR=1X;DP=3141;DPB=3141;DPRA=0;EPP=2949.07;EPPR=3244.85;GTI=0;LEN=1;MEANALT=1.75;MQM=36.8082;MQMR=59.8827;NS=4;NUMALT=1;ODDS=0;PAIRED=0.173359;PAIREDR=0.836735;PAO=0;PQA=0;PQR=0;PRO=0;QA=61479;QR=61246;RO=1568;RPL=0;RPP=3410.05;RPPR=3407.88;RPR=1569;RUN=1;SAF=1514;SAP=2949.07;SAR=55;SRF=1549;SRP=3244.85;SRR=19;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:974:432,540:432:16983:540:21183:-1304.9,0,-1232.44 0/1:801:405,396:405:15773:396:15646:-892.846,0,-1177.26 0/1:857:422,434:422:16379:434:16930:-980.864,0,-1214.84 0/1:509:309,199:309:12111:199:7720:-431.236,0,-930.078 dDocent_Contig_5466 9 . G A 21779.6 . AB=0.28122;ABP=861.946;AC=8;AF=1;AN=8;AO=581;CIGAR=1X7M;DP=2066;DPB=2066;DPRA=0;EPP=1264.64;EPPR=528.507;GTI=0;LEN=1;MEANALT=9.5;MQM=60;MQMR=60;NS=4;NUMALT=7;ODDS=0;PAIRED=0.845095;PAIREDR=0.0495868;PAO=0;PQA=0;PQR=0;PRO=0;QA=22218;QR=9286;RO=242;RPL=0;RPP=1264.64;RPPR=528.507;RPR=581;RUN=1;SAF=581;SAP=1264.64;SAR=0;SRF=242;SRP=528.507;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:580:50,48,35,15,62,136,24,197:50:1926:48,35,15,62,136,24,197:1885,1281,541,2257,5075,945,7582:-863.446,-723.505,-867.199,-773.822,-776.974,-921.43,-834.396,-837.547,-887.864,-988.024,-694.824,-697.976,-748.293,-808.866,-834.304,-464.384,-467.535,-517.853,-578.426,-438.855,-581.587,-800.753,-803.904,-854.222,-914.795,-775.224,-544.783,-951.672,-255.97,-259.121,-309.439,-370.013,-230.441,0,-336.369,-354.811 1|1:716:104,48,73,47,108,120,83,129:104:3977:48,73,47,108,120,83,129:1878,2665,1789,4060,4371,3149,4923:-402.624,-279.558,-591.441,-216.614,-388.573,-520.971,-287.193,-459.152,-396.208,-599.377,-101.344,-273.303,-210.36,-280.939,-395.165,-77.5545,-249.513,-186.57,-257.149,-71.3,-367.763,-176.299,-348.258,-285.314,-355.893,-170.044,-146.254,-477.646,-30.0442,-202.003,-139.06,-209.639,-23.7897,0,-98.7443,-317.544 1|1:482:67,39,22,21,63,82,22,164:67:2582:39,22,21,63,82,22,164:1520,823,757,2285,3056,864,6232:-528.75,-423.987,-624.263,-481.524,-568.608,-686.917,-487.162,-574.246,-631.783,-692.856,-362.445,-449.529,-507.067,-512.704,-555.496,-299.059,-386.143,-443.68,-449.318,-324.602,-486.39,-477.857,-564.941,-622.479,-628.116,-503.4,-440.013,-683.251,-37.8429,-124.927,-182.465,-188.103,-63.3871,0,-178.798,-200.491 1|1:288:21,12,31,17,60,48,6,91:21:801:12,31,17,60,48,6,91:473,1128,637,2168,1754,239,3481:-390.541,-357.946,-420.042,-304.744,-331.536,-361.121,-344.69,-371.483,-318.281,-405.282,-219.936,-246.729,-193.527,-233.474,-267.583,-253.559,-280.352,-227.15,-267.097,-142.344,-304.819,-377.18,-403.973,-350.771,-390.718,-265.963,-299.586,-441.083,-111.216,-138.008,-84.8069,-124.754,0,-33.6223,-157.243,-149.532 dDocent_Contig_5467 99 . N T 1684.01 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=51;CIGAR=2X9I4X;DP=51;DPB=127.5;DPRA=0;EPP=113.755;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=43.2157;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1950;QR=0;RO=0;RPL=51;RPP=113.755;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=113.755;SAR=51;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:19:0,19:0:0:19:728:-63.9679,-5.71957,0 1|1:10:0,10:0:0:10:379:-32.3558,-3.0103,0 1|1:10:0,10:0:0:10:386:-33.8644,-3.0103,0 1|1:12:0,12:0:0:12:457:-37.5134,-3.61236,0 dDocent_Contig_5470 11 . G A 1007.63 . AB=0.22488;ABP=140.416;AC=3;AF=0.375;AN=8;AO=47;CIGAR=1X;DP=245;DPB=245;DPRA=1.93519;EPP=105.07;EPPR=432.962;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1867;QR=7790;RO=198;RPL=0;RPP=105.07;RPPR=432.962;RPR=47;RUN=1;SAF=47;SAP=105.07;SAR=0;SRF=198;SRP=432.962;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:73:46,27:46:1814:27:1072:-74.7878,0,-141.489 0/1:94:78,16:78:3078:16:632:-28.918,0,-248.8 0/0:36:36,0:36:1422:0:0:0,-10.8371,-128.228 0/1:42:38,4:38:1476:4:163:-2.41517,0,-120.45 dDocent_Contig_5471 112 . C T 4967.58 . AB=0.498778;ABP=3.01561;AC=4;AF=0.5;AN=8;AO=204;CIGAR=1X;DP=409;DPB=409;DPRA=0;EPP=445.991;EPPR=448.162;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6957;QR=6981;RO=205;RPL=0;RPP=445.991;RPPR=448.162;RPR=204;RUN=1;SAF=0;SAP=445.991;SAR=204;SRF=0;SRP=448.162;SRR=205;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:178:92,86:92:3116:86:2936:-210.904,0,-227.098 0/1:126:63,63:63:2193:63:2127:-153.772,0,-159.713 0/1:80:41,39:41:1383:39:1339:-96.7277,0,-100.681 0/1:25:9,16:9:289:16:555:-42.7525,0,-18.7959 dDocent_Contig_5473 45 . A G 262.407 . AB=0.194805;ABP=65.3062;AC=2;AF=0.25;AN=8;AO=15;CIGAR=1X;DP=138;DPB=138;DPRA=1.2623;EPP=35.5824;EPPR=270.101;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=579;QR=4461;RO=123;RPL=0;RPP=35.5824;RPPR=270.101;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=123;SRP=270.101;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:38:38,0:38:1388:0:0:0,-11.4391,-125.196 0/1:56:45,11:45:1605:11:432:-22.3735,0,-127.85 0/0:23:23,0:23:847:0:0:0,-6.92369,-76.5442 0/1:21:17,4:17:621:4:147:-7.2652,0,-49.8906 dDocent_Contig_5474 18 . T C 658.425 . AB=0.157692;ABP=267.629;AC=2;AF=0.25;AN=8;AO=55;CIGAR=1X;DP=513;DPB=513;DPRA=0;EPP=105.701;EPPR=954.589;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.727273;PAIREDR=0.938865;PAO=0;PQA=0;PQR=0;PRO=0;QA=2198;QR=18243;RO=458;RPL=0;RPP=122.441;RPPR=997.545;RPR=55;RUN=1;SAF=53;SAP=105.701;SAR=2;SRF=453;SRP=954.589;SRR=5;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:124:114,10:114:4512:10:405:0,-0.517304,-369.212 0/0:129:125,4:125:5014:4:161:0,-23.9576,-436.252 0/1:116:99,17:99:3953:17:670:-25.7104,0,-320.831 0/1:144:120,24:120:4764:24:962:-43.5297,0,-385.322 dDocent_Contig_5475 37 . C A 8106.1 . AB=0.075;ABP=65.7659;AC=0;AF=0;AN=8;AO=3;CIGAR=1X3M1X1M1X2M1D7M1I2M;DP=382;DPB=382;DPRA=0;EPP=9.52472;EPPR=226.672;GTI=0;LEN=1;MEANALT=4;MQM=57;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=121;QR=4009;RO=103;RPL=0;RPP=9.52472;RPPR=226.672;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=103;SRP=226.672;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:133:26,0,100,7:26:1017:0,100,7:0,3921,284:-314.56,-322.386,-405.997,0,-83.5997,-53.4967,-298.964,-382.575,-60.1753,-380.468 0|0:135:44,0,88,0:44:1710:0,88,0:0,3470,0:-272.306,-285.552,-426.055,0,-140.584,-114.093,-285.552,-426.055,-140.584,-426.055 0|0:74:20,0,53,0:20:782:0,53,0:0,2077,0:-164.743,-170.764,-235.057,0,-64.2848,-48.3302,-170.764,-235.057,-64.2848,-235.057 0|0:40:13,3,22,0:13:500:3,22,0:121,856,0:-66.3986,-60.3489,-100.492,0,-31.0685,-34.4101,-70.312,-101.395,-41.0328,-111.358 dDocent_Contig_5477 37 . T A 10395.1 . AB=0.827004;ABP=223.135;AC=5;AF=0.625;AN=8;AO=326;CIGAR=1X;DP=378;DPB=378;DPRA=0;EPP=710.91;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=12823;QR=2041;RO=52;RPL=0;RPP=710.91;RPPR=115.927;RPR=326;RUN=1;SAF=326;SAP=710.91;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:141:11,130:11:440:130:5166:-424.873,-2.49102,0 0/1:130:11,119:11:433:119:4686:-382.548,0,-0.189117 0/1:58:23,35:23:898:35:1350:-104.303,0,-63.67 0/1:49:7,42:7:270:42:1621:-131.371,0,-9.91056 dDocent_Contig_5479 41 . G A 1909.96 . AB=0.331878;ABP=59.2315;AC=4;AF=0.5;AN=8;AO=76;CIGAR=1X;DP=229;DPB=229;DPRA=0;EPP=168.042;EPPR=335.246;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2956;QR=6020;RO=153;RPL=0;RPP=168.042;RPPR=335.246;RPR=76;RUN=1;SAF=76;SAP=168.042;SAR=0;SRF=153;SRP=335.246;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:50:33,17:33:1303:17:671:-45.6693,0,-102.48 0/1:44:32,12:32:1287:12:469:-29.3099,0,-102.851 0/1:60:45,15:45:1734:15:596:-35.9178,0,-138.214 0/1:75:43,32:43:1696:32:1220:-87.4973,0,-130.293 dDocent_Contig_5480 8 . C T 1097.99 . AB=0.165888;ABP=418.005;AC=3;AF=0.375;AN=8;AO=82;CIGAR=1X;DP=615;DPB=615;DPRA=0;EPP=181.071;EPPR=1160.41;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.6173;NS=4;NUMALT=1;ODDS=5.55112e-17;PAIRED=1;PAIREDR=0.986867;PAO=0;PQA=0;PQR=0;PRO=0;QA=3130;QR=20487;RO=533;RPL=0;RPP=181.071;RPPR=1160.41;RPR=82;RUN=1;SAF=82;SAP=181.071;SAR=0;SRF=533;SRP=1160.41;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:160:135,25:135:5188:25:954:-38.0069,0,-418.6 0/0:187:176,11:176:6763:11:429:0,-17.327,-568.53 0/1:160:136,24:136:5244:24:909:-33.9617,0,-423.597 0/1:108:86,22:86:3292:22:838:-43.228,0,-263.811 dDocent_Contig_5481 16 . C T 17536.8 . AB=0.306948;ABP=739.138;AC=4;AF=0.5;AN=8;AO=698;CIGAR=1X;DP=2274;DPB=2274;DPRA=0;EPP=1518.7;EPPR=3420.91;GTI=0;LEN=1;MEANALT=1.25;MQM=54.649;MQMR=59.6347;NS=4;NUMALT=1;ODDS=0;PAIRED=0.952722;PAIREDR=0.968234;PAO=0;PQA=0;PQR=0;PRO=0;QA=27936;QR=63362;RO=1574;RPL=0;RPP=1518.7;RPPR=3420.91;RPR=698;RUN=1;SAF=698;SAP=1518.7;SAR=0;SRF=1574;SRP=3420.91;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:778:595,183:595:23940:183:7309:-404.05,0,-1918.2 0/1:835:557,278:557:22458:278:11101:-718.885,0,-1758.68 0/1:357:221,136:221:8896:136:5458:-373.187,0,-691.913 0/1:304:201,101:201:8068:101:4068:-264.961,0,-633.52 dDocent_Contig_5483 19 . C A 53.4219 . AB=0.0906344;ABP=484.808;AC=1;AF=0.125;AN=8;AO=35;CIGAR=1X;DP=1360;DPB=1360;DPRA=0.652491;EPP=79.0118;EPPR=2875.87;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1380;QR=52674;RO=1323;RPL=0;RPP=79.0118;RPPR=2875.87;RPR=35;RUN=1;SAF=35;SAP=79.0118;SAR=0;SRF=1323;SRP=2875.87;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:409:408,0:408:16246:0:0:0,-122.82,-1460.66 0/0:414:414,0:414:16487:0:0:0,-124.626,-1482.5 0/1:331:300,30:300:11916:30:1183:-7.04116,0,-971.876 0/0:206:201,5:201:8025:5:197:0,-43.9081,-703.697 dDocent_Contig_5484 12 . G A 571.837 . AB=0.272727;ABP=47.4268;AC=4;AF=0.5;AN=8;AO=27;CIGAR=1X;DP=99;DPB=99;DPRA=0;EPP=61.6401;EPPR=157.185;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1034;QR=2623;RO=71;RPL=0;RPP=61.6401;RPPR=157.185;RPR=27;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=71;SRP=157.185;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:24,4:24:872:4:133:-3.86785,0,-70.3556 0/1:24:16,7:16:598:7:275:-17.7873,0,-46.8222 0/1:24:13,11:13:483:11:424:-31.2868,0,-36.5869 0/1:23:18,5:18:670:5:202:-11.6382,0,-53.6994 dDocent_Contig_5485 12 . A G 870.744 . AB=0.186508;ABP=218.124;AC=4;AF=0.5;AN=8;AO=47;CIGAR=1X;DP=252;DPB=252;DPRA=0;EPP=105.07;EPPR=448.162;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1877;QR=7939;RO=205;RPL=0;RPP=105.07;RPPR=448.162;RPR=47;RUN=1;SAF=47;SAP=105.07;SAR=0;SRF=205;SRP=448.162;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:90:76,14:76:3005:14:564:-24.009,0,-243.474 0/1:73:53,20:53:2079:20:787:-49.1648,0,-165.329 0/1:52:45,7:45:1698:7:285:-10.3708,0,-137.406 0/1:37:31,6:31:1157:6:241:-10.9277,0,-93.2805 dDocent_Contig_5486 19 . A C 801.945 . AB=0.253521;ABP=77.9414;AC=4;AF=0.5;AN=8;AO=36;CIGAR=1X;DP=142;DPB=142;DPRA=0;EPP=81.1833;EPPR=233.186;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=0.990566;PAO=0;PQA=0;PQR=0;PRO=0;QA=1432;QR=4245;RO=106;RPL=0;RPP=81.1833;RPPR=233.186;RPR=36;RUN=1;SAF=36;SAP=81.1833;SAR=0;SRF=106;SRP=233.186;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:75:51,24:51:2062:24:943:-62.5872,0,-163.182 0/1:33:27,6:27:1067:6:245:-12.4955,0,-86.3798 0/1:18:15,3:15:594:3:123:-6.04625,0,-48.3773 0/1:16:13,3:13:522:3:121:-6.46351,0,-42.5093 dDocent_Contig_5487 32 . A C 977.788 . AB=0.22549;ABP=136.535;AC=4;AF=0.5;AN=8;AO=46;CIGAR=1X;DP=204;DPB=204;DPRA=0;EPP=102.898;EPPR=343.931;GTI=0;LEN=1;MEANALT=1.25;MQM=59.6087;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1817;QR=6222;RO=157;RPL=0;RPP=102.898;RPPR=343.931;RPR=46;RUN=1;SAF=46;SAP=102.898;SAR=0;SRF=157;SRP=343.931;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:47:31,15:31:1222:15:577:-38.017,0,-96.007 0/1:69:53,16:53:2105:16:643:-37.4317,0,-168.859 0/1:50:38,12:38:1494:12:474:-27.727,0,-119.66 0/1:38:35,3:35:1401:3:123:-0.0256485,0,-114.906 dDocent_Contig_5488 23 . T C 179.615 . AB=0.35;ABP=6.91895;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=71;DPB=71;DPRA=1.36667;EPP=20.3821;EPPR=139.813;GTI=0;LEN=1;MEANALT=1;MQM=54.75;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.75;PAIREDR=0.873016;PAO=0;PQA=0;PQR=0;PRO=0;QA=326;QR=2508;RO=63;RPL=0;RPP=20.3821;RPPR=139.813;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=63;SRP=139.813;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:13,7:13:492:7:285:-19.3594,0,-38.5835 0/0:22:22,0:22:888:0:0:0,-6.62266,-80.2267 0/0:8:8,0:8:327:0:0:0,-2.40824,-29.8001 0/0:21:20,1:20:801:1:41:0,-2.22706,-68.3073 dDocent_Contig_5489 8 . C A 19465.1 . AB=0.358581;ABP=365.373;AC=4;AF=0.5;AN=8;AO=748;CIGAR=1X;DP=2086;DPB=2086;DPRA=0;EPP=1627.27;EPPR=2819.41;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.987968;PAIREDR=0.997687;PAO=0;PQA=0;PQR=0;PRO=0;QA=28572;QR=49736;RO=1297;RPL=0;RPP=1627.27;RPPR=2819.41;RPR=748;RUN=1;SAF=748;SAP=1627.27;SAR=0;SRF=1297;SRP=2819.41;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:744:511,215:511:19529:215:8251:-523.444,0,-1537.64 0/1:572:359,202:359:13763:202:7717:-525.102,0,-1068.79 0/1:445:242,195:242:9315:195:7413:-535.112,0,-706.127 0/1:325:185,136:185:7129:136:5191:-370.254,0,-544.516 dDocent_Contig_5490 1 . N G 144.148 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=5;CIGAR=1X;DP=5;DPB=5;DPRA=0;EPP=13.8677;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=37;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=204;QR=0;RO=0;RPL=0;RPP=13.8677;RPPR=0;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:82:-4.35136,-0.60206,0 1/1:2:0,2:0:0:2:81:-7.68573,-0.60206,0 1/1:1:0,1:0:0:1:41:-1.8973,-0.30103,0 ./.:.:.:.:.:.:.:. dDocent_Contig_5491 58 . C A 3273.47 . AB=0.273642;ABP=224.199;AC=4;AF=0.5;AN=8;AO=136;CIGAR=1X;DP=497;DPB=497;DPRA=0;EPP=298.331;EPPR=786.912;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=2.77556e-17;PAIRED=0.970588;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5370;QR=14244;RO=361;RPL=136;RPP=298.331;RPPR=786.912;RPR=0;RUN=1;SAF=136;SAP=298.331;SAR=0;SRF=361;SRP=786.912;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:156:109,47:109:4320:47:1853:-120.02,0,-341.8 0/1:152:102,50:102:3998:50:1984:-133.003,0,-314.061 0/1:109:91,18:91:3597:18:707:-31.1449,0,-290.961 0/1:80:59,21:59:2329:21:826:-50.5772,0,-185.691 dDocent_Contig_5492 29 . A G 328.35 . AB=0.150685;ABP=157.75;AC=2;AF=0.25;AN=8;AO=22;CIGAR=1X;DP=244;DPB=244;DPRA=1.4898;EPP=50.7827;EPPR=485.077;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.995495;PAO=0;PQA=0;PQR=0;PRO=0;QA=883;QR=8737;RO=222;RPL=0;RPP=50.7827;RPPR=485.077;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=222;SRP=485.077;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:104:89,15:89:3530:15:598:-22.8518,0,-286.439 0/0:68:68,0:68:2709:0:0:0,-20.47,-243.939 0/1:42:35,7:35:1340:7:285:-13.3811,0,-108.213 0/0:30:30,0:30:1158:0:0:0,-9.0309,-104.493 dDocent_Contig_5493 148 . T C 71.8466 . AB=0.110236;ABP=170.59;AC=2;AF=0.25;AN=8;AO=14;CIGAR=1X;DP=274;DPB=274;DPRA=0.863946;EPP=33.4109;EPPR=567.593;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=534;QR=10181;RO=260;RPL=0;RPP=33.4109;RPPR=567.593;RPR=14;RUN=1;SAF=0;SAP=33.4109;SAR=14;SRF=0;SRP=567.593;SRR=260;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:72:72,0:72:2832:0:0:0,-21.6742,-254.985 0/0:75:75,0:75:2928:0:0:0,-22.5772,-263.629 0/1:67:61,6:61:2354:6:239:-1.71491,0,-191.849 0/1:60:52,8:52:2067:8:295:-8.83068,0,-168.15 dDocent_Contig_5494 115 . T A 2092.81 . AB=0.456989;ABP=5.99899;AC=3;AF=0.375;AN=8;AO=91;CIGAR=1X;DP=275;DPB=275;DPRA=0;EPP=200.614;EPPR=402.561;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3209;QR=6213;RO=184;RPL=0;RPP=200.614;RPPR=402.561;RPR=91;RUN=1;SAF=0;SAP=200.614;SAR=91;SRF=0;SRP=402.561;SRR=184;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:89:83,6:83:2829:6:212:0,-7.36666,-235.433 0/1:58:28,30:28:912:30:1053:-77.6207,0,-64.9186 0/1:73:43,30:43:1453:30:1061:-73.8266,0,-109.084 0/1:55:30,25:30:1019:25:883:-63.2311,0,-75.46 dDocent_Contig_5495 22 . C A 253.516 . AB=0;ABP=0;AC=0;AF=0;AN=8;AO=6;CIGAR=2X2M1X;DP=334;DPB=334;DPRA=0.717172;EPP=16.0391;EPPR=645.766;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=229;QR=11478;RO=296;RPL=0;RPP=16.0391;RPPR=645.766;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=296;SRP=645.766;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:52:44,6,0:44:1731:6,0:227,0:-5.33795,0,-140.568,-18.5833,-142.374,-160.979 0|0:71:63,0,6:63:2386:0,6:0,229:0,-18.9649,-214.538,-0.192335,-195.756,-193.949 0|0:99:93,5,0:93:3599:5,0:197,0:0,-11.7854,-305.885,-27.9958,-307.39,-323.598 0|0:112:96,16,0:96:3762:16,0:631,0:-23.4108,0,-304.924,-52.3097,-309.741,-361.657 dDocent_Contig_5496 34 . T G 92.8374 . AB=0.123457;ABP=102.764;AC=1;AF=0.125;AN=8;AO=17;CIGAR=1X1M1X;DP=215;DPB=215;DPRA=4.14583;EPP=39.9253;EPPR=426.447;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.941176;PAIREDR=0.964103;PAO=0;PQA=0;PQR=0;PRO=0;QA=656;QR=6852;RO=195;RPL=0;RPP=39.9253;RPPR=426.447;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=195;SRP=426.447;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:72:66,6:66:2289:6:235:0,-0.152739,-184.734 0|1:81:71,10:71:2471:10:389:-10.982,0,-198.241 0|0:46:43,1:43:1548:1:32:0,-10.286,-136.55 0|0:16:15,0:15:544:0:0:0,-4.51545,-49.1989 dDocent_Contig_5497 9 . G C 61.084 . AB=0.147059;ABP=39.7976;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=135;DPB=135;DPRA=1.7;EPP=20.3821;EPPR=278.787;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=304;QR=4875;RO=127;RPL=0;RPP=20.3821;RPPR=278.787;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=127;SRP=278.787;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:34:29,5:29:1104:5:193:-7.50634,0,-89.4248 0/0:21:21,0:21:813:0:0:0,-6.32163,-73.495 0/0:51:48,3:48:1837:3:111:0,-4.9993,-155.224 0/0:29:29,0:29:1121:0:0:0,-8.72987,-101.192 dDocent_Contig_5499 8 . C T 41.391 . AB=0.2;ABP=14.7363;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=99;DPB=99;DPRA=0.98;EPP=11.6962;EPPR=209.3;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=150;QR=3665;RO=95;RPL=0;RPP=11.6962;RPPR=209.3;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=95;SRP=209.3;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:26:26,0:26:1002:0:0:0,-7.82678,-90.4893 0/0:34:33,1:33:1272:1:39:0,-6.33846,-110.874 0/0:24:24,0:24:929:0:0:0,-7.22472,-83.9258 0/1:15:12,3:12:462:3:111:-5.83804,0,-37.4151 dDocent_Contig_5500 52 . A C 675.867 . AB=0.237037;ABP=84.0947;AC=3;AF=0.375;AN=8;AO=32;CIGAR=1X;DP=182;DPB=182;DPRA=0.957447;EPP=72.4974;EPPR=328.731;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.933333;PAO=0;PQA=0;PQR=0;PRO=0;QA=1251;QR=5863;RO=150;RPL=32;RPP=72.4974;RPPR=328.731;RPR=0;RUN=1;SAF=32;SAP=72.4974;SAR=0;SRF=150;SRP=328.731;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:51:34,17:34:1339:17:683:-46.4483,0,-105.429 0/0:47:47,0:47:1836:0:0:0,-14.1484,-165.468 0/1:41:33,8:33:1280:8:288:-13.9094,0,-103.137 0/1:43:36,7:36:1408:7:280:-12.6269,0,-114.047 dDocent_Contig_5501 21 . G A 588.889 . AB=0.238095;ABP=78.0812;AC=3;AF=0.375;AN=8;AO=34;CIGAR=1M3I2M1X1M1D3M;DP=174;DPB=181.556;DPRA=0;EPP=76.8404;EPPR=300.502;GTI=0;LEN=1;MEANALT=1.75;MQM=57.9706;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1285;QR=5318;RO=137;RPL=0;RPP=76.8404;RPPR=300.502;RPR=34;RUN=1;SAF=34;SAP=76.8404;SAR=0;SRF=137;SRP=300.502;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:61:45,15:45:1727:15:562:-31.6653,0,-137.238 0|0:48:43,4:43:1678:4:153:0,-0.147108,-137.183 0|1:37:29,7:29:1138:7:266:-13.3303,0,-91.7675 0|1:28:20,8:20:775:8:304:-19.2904,0,-61.6432 dDocent_Contig_5502 104 . N T 125.761 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=4;CIGAR=3X2I1X;DP=4;DPB=6;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=7.37776;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=136;QR=0;RO=0;RPL=0;RPP=11.6962;RPPR=0;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. 1|1:4:0,4:0:0:4:136:-12.5759,-1.20412,0 .:.:.:.:.:.:.:. dDocent_Contig_5503 1 . N G 75.9287 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=80;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:80:-7.59179,-0.60206,0 dDocent_Contig_5505 42 . G A 241.456 . AB=0.24;ABP=32.3686;AC=2;AF=0.25;AN=8;AO=12;CIGAR=1X;DP=116;DPB=116;DPRA=0.757576;EPP=29.068;EPPR=228.843;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=465;QR=4093;RO=104;RPL=0;RPP=29.068;RPPR=228.843;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=104;SRP=228.843;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:37:37,0:37:1466:0:0:0,-11.1381,-132.182 0/0:29:29,0:29:1152:0:0:0,-8.72987,-103.96 0/1:14:12,2:12:457:2:80:-3.37737,0,-37.2452 0/1:36:26,10:26:1018:10:385:-24.1616,0,-81.0724 dDocent_Contig_5506 9 . G A 382.223 . AB=0.191667;ABP=102.102;AC=3;AF=0.375;AN=8;AO=25;CIGAR=1X;DP=195;DPB=195;DPRA=0;EPP=57.2971;EPPR=372.161;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=952;QR=6467;RO=170;RPL=0;RPP=57.2971;RPPR=372.161;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=170;SRP=372.161;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:70:55,15:55:2087:15:567:-30.2969,0,-166.992 0/0:75:73,2:73:2782:2:78:0,-15.1738,-243.157 0/1:18:14,4:14:532:4:151:-8.53881,0,-42.8041 0/1:32:28,4:28:1066:4:156:-4.78433,0,-86.6129 dDocent_Contig_5508 25 . G C 957.348 . AB=0.170968;ABP=294.52;AC=2;AF=0.25;AN=8;AO=59;CIGAR=1X;DP=604;DPB=604;DPRA=0.957265;EPP=131.127;EPPR=1166.94;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=58.8667;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.974074;PAO=0;PQA=0;PQR=0;PRO=0;QA=2368;QR=21386;RO=540;RPL=0;RPP=131.127;RPPR=1175.61;RPR=59;RUN=1;SAF=59;SAP=131.127;SAR=0;SRF=539;SRP=1166.94;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:192:159,33:159:6320:33:1337:-62.7902,0,-496.258 0/0:156:152,0:152:6039:0:0:0,-45.7566,-538.909 0/0:138:131,6:131:5158:6:236:0,-19.9756,-438.889 0/1:118:98,20:98:3869:20:795:-36.3425,0,-312.645 dDocent_Contig_5509 19 . C T 77.1737 . AB=0.108108;ABP=151.081;AC=1;AF=0.125;AN=8;AO=13;CIGAR=1X;DP=301;DPB=301;DPRA=0.905063;EPP=31.2394;EPPR=628.394;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=510;QR=11523;RO=288;RPL=0;RPP=31.2394;RPPR=628.394;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=288;SRP=628.394;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:112:112,0:112:4504:0:0:0,-33.7154,-405.278 0/1:111:99,12:99:3935:12:472:-9.41634,0,-320.712 0/0:46:46,0:46:1841:0:0:0,-13.8474,-165.895 0/0:32:31,1:31:1243:1:38:0,-5.83569,-108.339 dDocent_Contig_5510 36 . C A 120.887 . AB=0.136986;ABP=86.5674;AC=2;AF=0.25;AN=8;AO=12;CIGAR=1X;DP=146;DPB=146;DPRA=1.05714;EPP=29.068;EPPR=260.281;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.641791;PAO=0;PQA=0;PQR=0;PRO=0;QA=472;QR=5228;RO=134;RPL=0;RPP=29.068;RPPR=293.988;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=130;SRP=260.281;SRR=4;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:47:43,4:43:1697:4:157:-0.360016,0,-138.81 0/1:26:20,6:20:784:6:236:-13.7852,0,-63.0512 0/0:38:36,2:36:1400:2:79:0,-3.9419,-118.763 0/0:35:35,0:35:1347:0:0:0,-10.536,-121.494 dDocent_Contig_5511 7 . A T 568.442 . AB=0.0813008;ABP=190.304;AC=1;AF=0.125;AN=8;AO=10;CIGAR=1X1M1X;DP=292;DPB=292;DPRA=0.448905;EPP=24.725;EPPR=545.878;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=386;QR=9536;RO=250;RPL=0;RPP=24.725;RPPR=545.878;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=250;SRP=545.878;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:137:130,0,6:130:4979:0,6:0,234:0,-39.1339,-447.76,-20.1125,-428.752,-426.946 0|0:69:54,2,13:54:2044:2,13:78,501:-24.8799,-34.7232,-201.68,0,-161.142,-163.64 0|1:54:44,8,2:44:1676:8,2:308,77:-12.0441,0,-135.067,-18.967,-131.153,-155.841 0|0:32:22,0,10:22:837:0,10:0,385:-25.3181,-31.9408,-100.587,0,-69.0293,-66.019 dDocent_Contig_5512 17 . C A 1460.17 . AB=0.273128;ABP=104.496;AC=4;AF=0.5;AN=8;AO=62;CIGAR=1X;DP=227;DPB=227;DPRA=0;EPP=137.642;EPPR=361.303;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2449;QR=6583;RO=165;RPL=0;RPP=137.642;RPPR=361.303;RPR=62;RUN=1;SAF=62;SAP=137.642;SAR=0;SRF=165;SRP=361.303;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:107:93,14:93:3704:14:555:-18.0813,0,-301.165 0/1:45:26,19:26:1037:19:746:-53.9103,0,-80.0768 0/1:40:29,11:29:1153:11:439:-27.8216,0,-92.0066 0/1:35:17,18:17:689:18:709:-53.6017,0,-51.8026 dDocent_Contig_5514 20 . C A 59.6359 . AB=0.114754;ABP=81.6461;AC=1;AF=0.125;AN=8;AO=11;CIGAR=1X;DP=200;DPB=200;DPRA=1.25397;EPP=26.8965;EPPR=413.419;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=445;QR=7540;RO=189;RPL=0;RPP=26.8965;RPPR=413.419;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=189;SRP=413.419;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:37:34,3:34:1378:3:119:0,-0.0430954,-113.177 0/1:61:54,7:54:2161:7:285:-7.66158,0,-176.3 0/0:60:59,1:59:2349:1:41:0,-13.9672,-207.474 0/0:42:42,0:42:1652:0:0:0,-12.6433,-148.908 dDocent_Contig_5516 11 . T C 1409.76 . AB=0.216393;ABP=216.092;AC=3;AF=0.375;AN=8;AO=72;CIGAR=1X;DP=436;DPB=436;DPRA=0;EPP=159.356;EPPR=793.426;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.972222;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2881;QR=14673;RO=364;RPL=0;RPP=159.356;RPPR=793.426;RPR=72;RUN=1;SAF=72;SAP=159.356;SAR=0;SRF=364;SRP=793.426;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:131:125,6:125:5025:6:245:0,-17.0055,-429.685 0/1:135:112,23:112:4536:23:903:-40.9293,0,-367.503 0/1:78:71,7:71:2863:7:285:-2.54407,0,-234.27 0/1:92:56,36:56:2249:36:1448:-102.87,0,-174.878 dDocent_Contig_5517 9 . C A 10380.4 . AB=0.514085;ABP=4.23366;AC=4;AF=0.5;AN=8;AO=365;CIGAR=1X;DP=710;DPB=710;DPRA=0;EPP=795.598;EPPR=752.168;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=13985;QR=13346;RO=345;RPL=0;RPP=795.598;RPPR=752.168;RPR=365;RUN=1;SAF=365;SAP=795.598;SAR=0;SRF=345;SRP=752.168;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:181:93,88:93:3608:88:3341:-246.347,0,-270.344 0/1:163:69,94:69:2677:94:3588:-273.981,0,-192.043 0/1:192:88,104:88:3391:104:3998:-302.115,0,-247.522 0/1:174:95,79:95:3670:79:3058:-222.996,0,-278.031 dDocent_Contig_5519 15 . G C 11429.6 . AB=0.267054;ABP=327.757;AC=2;AF=0.25;AN=8;AO=184;CIGAR=1X3M1X;DP=689;DPB=689;DPRA=0;EPP=402.561;EPPR=398.218;GTI=0;LEN=1;MEANALT=3.25;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.98913;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7131;QR=6997;RO=182;RPL=0;RPP=402.561;RPPR=398.218;RPR=184;RUN=1;SAF=184;SAP=402.561;SAR=0;SRF=182;SRP=398.218;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:272:58,80,134:58:2254:80,134:3115,5087:-470.45,-231.903,-393.037,-70.7898,0,-215.665 1|0:202:32,77,91:32:1218:77,91:2975,3493:-421.513,-186.823,-263.536,-144.438,0,-216.936 0|0:104:44,11,46:44:1680:11,46:423,1729:-128.377,-106.901,-241.422,0,-103.105,-123.978 0|0:111:48,16,47:48:1845:16,47:618,1764:-130.021,-93.7148,-240.364,0,-100.705,-137.311 dDocent_Contig_5521 70 . C A 11531.7 . AB=0.746057;ABP=336.417;AC=4;AF=0.5;AN=8;AO=473;CIGAR=1X;DP=634;DPB=634;DPRA=0;EPP=1030.12;EPPR=352.617;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.6708;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.708075;PAO=0;PQA=0;PQR=0;PRO=0;QA=15006;QR=5220;RO=161;RPL=473;RPP=1030.12;RPPR=352.617;RPR=0;RUN=1;SAF=473;SAP=1030.12;SAR=0;SRF=161;SRP=352.617;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:159:47,112:47:1542:112:3580:-274.561,0,-88.6754 0/1:172:43,129:43:1371:129:4137:-320.763,0,-71.8945 0/1:150:34,116:34:1109:116:3636:-282.305,0,-54.9505 0/1:153:37,116:37:1198:116:3653:-282.938,0,-62.0528 dDocent_Contig_5522 31 . G A 12046.9 . AB=0.711111;ABP=212.051;AC=5;AF=0.625;AN=8;AO=384;CIGAR=1X1M1D2M2X3M1X3M;DP=540;DPB=509.286;DPRA=0;EPP=836.856;EPPR=241.872;GTI=0;LEN=1;MEANALT=3;MQM=59.1771;MQMR=60;NS=4;NUMALT=2;ODDS=5.55112e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=14933;QR=4202;RO=110;RPL=0;RPP=836.856;RPPR=241.872;RPR=384;RUN=1;SAF=384;SAP=836.856;SAR=0;SRF=110;SRP=241.872;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:158:71,7,80:71:2733:7,80:279,3119:-234.855,-233.305,-455.577,0,-201.446,-200.287 0|1:156:21,10,124:21:794:10,124:383,4815:-389.229,-364.122,-426.192,0,-33.6479,-27.7502 0|1:100:13,11,75:13:489:11,75:434,2945:-238.293,-206.496,-243.245,0,-4.33608,-17.4781 1|1:126:5,10,105:5:186:10,105:399,4054:-348.957,-317.6,-329.809,-17.6587,0,-1.26658 dDocent_Contig_5523 58 . G A 3891.43 . AB=0.429012;ABP=17.1919;AC=4;AF=0.5;AN=8;AO=139;CIGAR=1X;DP=324;DPB=324;DPRA=0;EPP=304.845;EPPR=404.733;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.942446;PAIREDR=0.994595;PAO=0;PQA=0;PQR=0;PRO=0;QA=5478;QR=7159;RO=185;RPL=139;RPP=304.845;RPPR=404.733;RPR=0;RUN=1;SAF=139;SAP=304.845;SAR=0;SRF=185;SRP=404.733;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:76:58,18:58:2260:18:699:-40.3596,0,-180.708 0/1:90:29,61:29:1129:61:2416:-190.507,0,-74.803 0/1:106:76,30:76:2961:30:1173:-73.9443,0,-234.7 0/1:52:22,30:22:809:30:1190:-91.7298,0,-57.4589 dDocent_Contig_5524 20 . G A 10008.3 . AB=0.395474;ABP=91.0766;AC=4;AF=0.5;AN=8;AO=367;CIGAR=1X;DP=928;DPB=928;DPRA=0;EPP=799.941;EPPR=1221.21;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=14304;QR=21941;RO=561;RPL=0;RPP=799.941;RPPR=1221.21;RPR=367;RUN=1;SAF=367;SAP=799.941;SAR=0;SRF=561;SRP=1221.21;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:328:172,156:172:6702:156:6073:-447.661,0,-504.226 0/1:297:205,92:205:8065:92:3641:-238.324,0,-636.095 0/1:183:106,77:106:4126:77:2983:-213.503,0,-316.272 0/1:120:78,42:78:3048:42:1607:-108.742,0,-238.311 dDocent_Contig_5525 18 . G A 810.914 . AB=0.188285;ABP=204.721;AC=3;AF=0.375;AN=8;AO=45;CIGAR=1X;DP=319;DPB=319;DPRA=0.995833;EPP=100.727;EPPR=597.994;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.99635;PAO=0;PQA=0;PQR=0;PRO=0;QA=1749;QR=10507;RO=274;RPL=0;RPP=100.727;RPPR=597.994;RPR=45;RUN=1;SAF=45;SAP=100.727;SAR=0;SRF=274;SRP=597.994;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:132:109,23:109:4166:23:896:-41.2216,0,-335.272 0/0:80:80,0:80:3046:0:0:0,-24.0824,-274.289 0/1:57:44,13:44:1711:13:507:-28.8201,0,-137.083 0/1:50:41,9:41:1584:9:346:-16.4476,0,-127.773 dDocent_Contig_5526 9 . C A 102.998 . AB=0.206897;ABP=24.6501;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=105;DPB=105;DPRA=1.14474;EPP=16.0391;EPPR=139.901;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.1919;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.89899;PAO=0;PQA=0;PQR=0;PRO=0;QA=223;QR=3739;RO=99;RPL=0;RPP=16.0391;RPPR=217.986;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=89;SRP=139.901;SRR=10;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:23,6:23:883:6:223:-11.6977,0,-71.0595 0/0:39:39,0:39:1446:0:0:0,-11.7402,-130.375 0/0:25:25,0:25:963:0:0:0,-7.52575,-86.9722 0/0:12:12,0:12:447:0:0:0,-3.61236,-40.5716 dDocent_Contig_5527 120 . A G 6522.15 . AB=0.393897;ABP=73.5124;AC=4;AF=0.5;AN=8;AO=284;CIGAR=1X;DP=721;DPB=721;DPRA=0;EPP=619.708;EPPR=951.944;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=9729;QR=14949;RO=437;RPL=0;RPP=619.708;RPPR=951.944;RPR=284;RUN=1;SAF=0;SAP=619.708;SAR=284;SRF=0;SRP=951.944;SRR=437;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:277:190,87:190:6490:87:2966:-183.797,0,-500.825 0/1:180:100,80:100:3415:80:2767:-195.097,0,-253.389 0/1:189:106,83:106:3604:83:2834:-198.413,0,-267.679 0/1:75:41,34:41:1440:34:1162:-82.3063,0,-107.321 dDocent_Contig_5528 107 . N T 132.217 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=7.37776;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=143;QR=0;RO=0;RPL=0;RPP=11.6962;RPPR=0;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:4:0,4:0:0:4:143:-13.2214,-1.20412,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_5530 13 . T C 9068.63 . AB=0.447735;ABP=16.6293;AC=4;AF=0.5;AN=8;AO=257;CIGAR=1M1X12M;DP=574;DPB=568.857;DPRA=0;EPP=561.079;EPPR=213.643;GTI=0;LEN=1;MEANALT=3.75;MQM=60;MQMR=59.9588;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=10265;QR=3824;RO=97;RPL=0;RPP=561.079;RPPR=213.643;RPR=257;RUN=1;SAF=257;SAP=561.079;SAR=0;SRF=97;SRP=213.643;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:214:43,48,22,100:43:1698:48,22,100:1152,872,3973:-314.198,-250.931,-376.201,-255.365,-318.881,-388.476,0,-63.5812,-67.9795,-109.665 0|1:190:22,93,2,72:22:857:93,2,72:2232,82,2882:-308.027,-166.992,-209.43,-307.88,-230.658,-377.725,-77.1583,0,-140.856,-125.953 0|1:106:11,36,8,50:11:439:36,8,50:857,321,1997:-181.706,-128.322,-153.641,-158.562,-138.029,-192.319,-20.4594,0,-30.1763,-41.594 0|1:64:21,7,0,35:21:830:7,0,35:168,0,1413:-110.33,-105.56,-171.752,-116.651,-173.859,-184.96,0,-57.362,-68.4423,-57.9062 dDocent_Contig_5531 18 . A C 833.429 . AB=0.201005;ABP=157.534;AC=3;AF=0.375;AN=8;AO=42;CIGAR=1X;DP=234;DPB=234;DPRA=0;EPP=94.2121;EPPR=419.933;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1704;QR=7692;RO=192;RPL=0;RPP=94.2121;RPPR=419.933;RPR=42;RUN=1;SAF=42;SAP=94.2121;SAR=0;SRF=192;SRP=419.933;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:111:84,27:84:3377:27:1099:-65.7774,0,-270.562 0/1:64:53,11:53:2115:11:443:-20.9596,0,-171.264 0/0:35:33,2:33:1329:2:80:0,-2.94426,-112.276 0/1:24:22,2:22:871:2:82:-0.554958,0,-71.4698 dDocent_Contig_5532 26 . C T 780.323 . AB=0.216867;ABP=118.595;AC=1;AF=0.125;AN=8;AO=36;CIGAR=1X;DP=612;DPB=612;DPRA=1.11659;EPP=81.1833;EPPR=1253.78;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1435;QR=23006;RO=576;RPL=0;RPP=81.1833;RPPR=1253.78;RPR=36;RUN=1;SAF=36;SAP=81.1833;SAR=0;SRF=576;SRP=1253.78;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:166:130,36:130:5245:36:1435:-79.4302,0,-421.914 0/0:173:173,0:173:6913:0:0:0,-52.0782,-621.837 0/0:193:193,0:193:7680:0:0:0,-58.0988,-690.802 0/0:80:80,0:80:3168:0:0:0,-24.0824,-285.187 dDocent_Contig_5533 9 . C T 219.417 . AB=0.210526;ABP=44.4969;AC=2;AF=0.25;AN=8;AO=12;CIGAR=1X;DP=142;DPB=142;DPRA=0.670588;EPP=29.068;EPPR=285.302;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=464;QR=4967;RO=130;RPL=0;RPP=29.068;RPPR=285.302;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=130;SRP=285.302;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:62:62,0:62:2369:0:0:0,-18.6639,-213.422 0/1:29:22,7:22:834:7:270:-15.9357,0,-66.6517 0/1:28:23,5:23:878:5:194:-9.404,0,-70.9062 0/0:23:23,0:23:886:0:0:0,-6.92369,-80.0598 dDocent_Contig_5534 9 . C T 280.999 . AB=0.375;ABP=7.35324;AC=2;AF=0.25;AN=8;AO=12;CIGAR=1X;DP=63;DPB=63;DPRA=1.03226;EPP=29.068;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=449;QR=1930;RO=50;RPL=0;RPP=29.068;RPPR=111.584;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:15:15,0:15:576:0:0:0,-4.51545,-52.1825 0/0:16:15,0:15:583:0:0:0,-4.51545,-52.4423 0/1:15:7,8:7:272:8:296:-22.4738,0,-20.3318 0/1:17:13,4:13:499:4:153:-9.0241,0,-40.1394 dDocent_Contig_5535 32 . A T 77.1781 . AB=0.151515;ABP=37.8197;AC=1;AF=0.125;AN=8;AO=5;CIGAR=7M1X6M;DP=78;DPB=73.7143;DPRA=0.868421;EPP=13.8677;EPPR=150.67;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0.970588;PAO=0;PQA=0;PQR=0;PRO=0;QA=191;QR=2656;RO=68;RPL=0;RPP=13.8677;RPPR=150.67;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=68;SRP=150.67;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:15:12,2,1:12:471:2,1:58,38:-0.941704,0,-38.1455,-1.40757,-35.632,-39.9304 0|0:26:23,3,0:23:912:3,0:109,0:-2.34065,0,-74.5659,-9.26434,-75.469,-84.3664 0|1:18:14,0,4:14:538:0,4:0,153:-8.71941,-12.9338,-57.0982,0,-44.5469,-43.3428 0|0:19:19,0,0:19:735:0,0:0,0:0,-5.71957,-66.4727,-5.71957,-66.4727,-66.4727 dDocent_Contig_5536 11 . C T 203.6 . AB=0.227273;ABP=31.4368;AC=1;AF=0.125;AN=8;AO=15;CIGAR=1X;DP=282;DPB=282;DPRA=0.630058;EPP=35.5824;EPPR=580.622;GTI=0;LEN=1;MEANALT=1.5;MQM=57.6;MQMR=57.7256;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.236842;PAO=0;PQA=0;PQR=0;PRO=0;QA=595;QR=10381;RO=266;RPL=0;RPP=35.5824;RPPR=580.622;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=266;SRP=580.622;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:154:154,0:154:6042:0:0:0,-46.3586,-540.558 0/0:65:59,5:59:2263:5:202:0,-0.837969,-182.777 0/1:44:34,10:34:1350:10:393:-22.0588,0,-108.45 0/0:19:19,0:19:726:0:0:0,-5.71957,-65.2188 dDocent_Contig_5537 21 . G C 25564.2 . AB=0.87037;ABP=1096.79;AC=4;AF=0.5;AN=8;AO=799;CIGAR=1X;DP=918;DPB=918;DPRA=0;EPP=1738.02;EPPR=257.073;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=31573;QR=4587;RO=117;RPL=0;RPP=1738.02;RPPR=257.073;RPR=799;RUN=1;SAF=799;SAP=1738.02;SAR=0;SRF=117;SRP=257.073;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:355:40,315:40:1566:315:12487:-1016.09,0,-34.3111 0/1:304:39,263:39:1529:263:10366:-840.98,0,-46.5425 0/1:145:25,120:25:970:120:4710:-380.182,0,-43.9526 0/1:114:13,101:13:522:101:4010:-326.569,0,-13.0089 dDocent_Contig_5538 26 . A T 46.5563 . AB=0.142857;ABP=34.0313;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=103;DPB=103;DPRA=1.12;EPP=11.6962;EPPR=217.986;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.979798;PAO=0;PQA=0;PQR=0;PRO=0;QA=160;QR=3944;RO=99;RPL=0;RPP=11.6962;RPPR=217.986;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=99;SRP=217.986;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:26:26,0:26:1042:0:0:0,-7.82678,-94.0693 0/0:28:28,0:28:1123:0:0:0,-8.42884,-101.355 0/1:28:24,4:24:937:4:160:-6.35459,0,-76.1992 0/0:21:21,0:21:842:0:0:0,-6.32163,-76.0929 dDocent_Contig_5539 9 . C A 2095.01 . AB=0.450867;ABP=6.63779;AC=4;AF=0.5;AN=8;AO=78;CIGAR=1X;DP=173;DPB=173;DPRA=0;EPP=172.385;EPPR=209.3;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.989474;PAO=0;PQA=0;PQR=0;PRO=0;QA=2974;QR=3660;RO=95;RPL=0;RPP=172.385;RPPR=209.3;RPR=78;RUN=1;SAF=78;SAP=172.385;SAR=0;SRF=95;SRP=209.3;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:45:19,26:19:729:26:998:-76.5851,0,-52.3932 0/1:61:23,38:23:885:38:1436:-111.151,0,-61.6059 0/1:34:28,6:28:1073:6:234:-11.1961,0,-86.6394 0/1:33:25,8:25:973:8:306:-17.967,0,-77.9488 dDocent_Contig_5540 36 . T G 186.713 . AB=0.204082;ABP=40.2799;AC=1;AF=0.125;AN=8;AO=12;CIGAR=1X;DP=118;DPB=118;DPRA=2.10526;EPP=29.068;EPPR=233.186;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=463;QR=4091;RO=106;RPL=0;RPP=29.068;RPPR=233.186;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=106;SRP=233.186;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:49:39,10:39:1530:10:383:-20.0692,0,-123.194 0/0:31:29,2:29:1151:2:80:0,-1.74014,-96.2818 0/0:15:15,0:15:534:0:0:0,-4.51545,-48.3742 0/0:23:23,0:23:876:0:0:0,-6.92369,-79.1436 dDocent_Contig_5541 9 . C A 15079 . AB=0.415982;ABP=85.1095;AC=4;AF=0.5;AN=8;AO=557;CIGAR=1X;DP=1339;DPB=1339;DPRA=0;EPP=1212.52;EPPR=1694.59;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=5.55112e-17;PAIRED=0.998205;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=21314;QR=29823;RO=779;RPL=0;RPP=1212.52;RPPR=1694.59;RPR=557;RUN=1;SAF=557;SAP=1212.52;SAR=0;SRF=779;SRP=1694.59;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:408:263,144:263:10046:144:5510:-372.978,0,-780.883 0/1:314:178,134:178:6799:134:5167:-370.719,0,-517.484 0/1:330:159,171:159:6095:171:6521:-487.47,0,-449.144 0/1:287:179,108:179:6883:108:4116:-284.13,0,-532.951 dDocent_Contig_5542 13 . G C 402.506 . AB=0.518519;ABP=3.09072;AC=2;AF=0.25;AN=8;AO=14;CIGAR=1X;DP=46;DPB=46;DPRA=1.42105;EPP=33.4109;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=567;QR=1293;RO=32;RPL=0;RPP=33.4109;RPPR=72.4974;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:7,6:7:286:6:243:-18.3346,0,-22.2014 0/1:14:6,8:6:242:8:324:-25.3139,0,-17.9425 0/0:13:13,0:13:523:0:0:0,-3.91339,-47.4157 0/0:6:6,0:6:242:0:0:0,-1.80618,-22.1569 dDocent_Contig_5543 24 . A C 574.537 . AB=0.454545;ABP=3.79993;AC=1;AF=0.125;AN=8;AO=20;CIGAR=1X;DP=165;DPB=165;DPRA=1.09091;EPP=46.4397;EPPR=315.702;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=801;QR=5786;RO=144;RPL=0;RPP=46.4397;RPPR=315.702;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=144;SRP=315.702;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:59:58,0:58:2322:0:0:0,-17.4597,-208.866 0/1:44:24,20:24:973:20:801:-59.1527,0,-74.6221 0/0:42:42,0:42:1700:0:0:0,-12.6433,-153.218 0/0:20:20,0:20:791:0:0:0,-6.0206,-71.5104 dDocent_Contig_5544 119 . C A 198.611 . AB=0.168224;ABP=105.313;AC=2;AF=0.25;AN=8;AO=18;CIGAR=1X;DP=187;DPB=187;DPRA=1.3375;EPP=42.0968;EPPR=369.989;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=609;QR=5661;RO=169;RPL=0;RPP=42.0968;RPPR=369.989;RPR=18;RUN=1;SAF=0;SAP=42.0968;SAR=18;SRF=0;SRP=369.989;SRR=169;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:62:62,0:62:2098:0:0:0,-18.6639,-189.091 0/1:70:60,10:60:2006:10:332:-9.13022,0,-159.741 0/1:37:29,8:29:953:8:277:-14.1289,0,-74.9289 0/0:18:18,0:18:604:0:0:0,-5.41854,-54.6777 dDocent_Contig_5545 85 . G A 55.2641 . AB=0.2;ABP=18.6449;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=45;DPB=45;DPRA=2.4;EPP=11.6962;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=0.878049;PAO=0;PQA=0;PQR=0;PRO=0;QA=140;QR=1349;RO=41;RPL=4;RPP=11.6962;RPPR=92.0407;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:16,4:16:523:4:140:-6.92433,0,-41.36 0/0:11:11,0:11:363:0:0:0,-3.31133,-32.9896 0/0:7:7,0:7:243:0:0:0,-2.10721,-22.2088 0/0:7:7,0:7:220:0:0:0,-2.10721,-20.1082 dDocent_Contig_5546 27 . A G 83.703 . AB=0.178571;ABP=28.1373;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=95;DPB=95;DPRA=1.25373;EPP=13.8677;EPPR=198.443;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=198;QR=3482;RO=90;RPL=0;RPP=13.8677;RPPR=198.443;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=90;SRP=198.443;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:23,5:23:911:5:198:-9.76824,0,-73.8678 0/0:34:34,0:34:1285:0:0:0,-10.235,-115.919 0/0:14:14,0:14:542:0:0:0,-4.21442,-49.1203 0/0:19:19,0:19:744:0:0:0,-5.71957,-67.2847 dDocent_Contig_5547 7 . A T 150.368 . AB=0.125;ABP=159.356;AC=1;AF=0.125;AN=8;AO=28;CIGAR=1X;DP=397;DPB=397;DPRA=0;EPP=63.8115;EPPR=802.112;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.991848;PAO=0;PQA=0;PQR=0;PRO=0;QA=1065;QR=14036;RO=368;RPL=0;RPP=63.8115;RPPR=802.112;RPR=28;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=368;SRP=802.112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:128:112,16:112:4246:16:607:-16.4347,0,-343.687 0/0:132:128,4:128:4894:4:154:0,-25.5025,-426.257 0/0:81:75,6:75:2875:6:230:0,-3.31654,-237.857 0/0:56:53,2:53:2021:2:74:0,-9.91424,-175.097 dDocent_Contig_5548 26 . G A 574.15 . AB=0.362069;ABP=12.5947;AC=1;AF=0.125;AN=8;AO=23;CIGAR=1X;DP=203;DPB=203;DPRA=1.65686;EPP=52.9542;EPPR=393.875;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=923;QR=7034;RO=180;RPL=0;RPP=52.9542;RPPR=393.875;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=180;SRP=393.875;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:58:37,21:37:1485:21:844:-58.8129,0,-116.438 0/0:62:61,1:61:2379:1:38:0,-14.8666,-210.469 0/0:34:34,0:34:1293:0:0:0,-10.235,-116.618 0/0:49:48,1:48:1877:1:41:0,-10.6559,-165.039 dDocent_Contig_5550 98 . N T 37.945 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=36;QR=0;RO=0;RPL=3;RPP=9.52472;RPPR=0;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:26:-2.46997,-0.60206,0 1/1:1:0,1:0:0:1:10:-0.999996,-0.30103,0 dDocent_Contig_5551 194 . G A 381.681 . AB=0.326531;ABP=15.8176;AC=4;AF=0.5;AN=8;AO=16;CIGAR=1X;DP=49;DPB=49;DPRA=0;EPP=37.7539;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=644;QR=1334;RO=33;RPL=16;RPP=37.7539;RPPR=74.6689;RPR=0;RUN=1;SAF=0;SAP=37.7539;SAR=16;SRF=0;SRP=74.6689;SRR=33;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:8,1:8:324:1:39:-1.18729,0,-26.8196 0/1:14:8,6:8:328:6:245:-18.2151,0,-25.6759 0/1:11:9,2:9:364:2:80:-4.28025,0,-29.8131 0/1:15:8,7:8:318:7:280:-21.0538,0,-24.4696 dDocent_Contig_5552 52 . A G 2162.31 . AB=0.328125;ABP=68.6973;AC=4;AF=0.5;AN=8;AO=84;CIGAR=1X;DP=256;DPB=256;DPRA=0;EPP=185.414;EPPR=376.504;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3327;QR=6854;RO=172;RPL=84;RPP=185.414;RPPR=376.504;RPR=0;RUN=1;SAF=84;SAP=185.414;SAR=0;SRF=172;SRP=376.504;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:45:35,10:35:1406:10:406:-23.3543,0,-113.247 0/1:82:41,41:41:1644:41:1609:-120.357,0,-123.503 0/1:84:60,24:60:2406:24:949:-60.4304,0,-191.402 0/1:45:36,9:36:1398:9:363:-19.4879,0,-112.532 dDocent_Contig_5553 13 . C G 40.2895 . AB=0.0972222;ABP=205.922;AC=2;AF=0.25;AN=8;AO=21;CIGAR=1X;DP=283;DPB=283;DPRA=0;EPP=48.6112;EPPR=571.936;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.965649;PAO=0;PQA=0;PQR=0;PRO=0;QA=829;QR=10469;RO=262;RPL=0;RPP=48.6112;RPPR=571.936;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=262;SRP=571.936;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:89:84,5:84:3370:5:203:0,-8.13861,-284.699 0/1:82:75,7:75:2994:7:279:-0.796896,0,-244.866 0/1:62:55,7:55:2193:7:267:-5.72113,0,-178.88 0/0:50:48,2:48:1912:2:80:0,-7.45971,-164.694 dDocent_Contig_5554 15 . G A 121.355 . AB=0.129412;ABP=104.405;AC=2;AF=0.25;AN=8;AO=11;CIGAR=1X;DP=173;DPB=173;DPRA=0.965909;EPP=26.8965;EPPR=354.789;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.636364;PAIREDR=0.987654;PAO=0;PQA=0;PQR=0;PRO=0;QA=439;QR=6375;RO=162;RPL=0;RPP=26.8965;RPPR=354.789;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=162;SRP=354.789;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:53:53,0:53:2068:0:0:0,-15.9546,-186.315 0/0:35:35,0:35:1376:0:0:0,-10.536,-124.094 0/1:62:53,9:53:2105:9:357:-13.8267,0,-170.97 0/1:23:21,2:21:826:2:82:-0.855988,0,-67.7322 dDocent_Contig_5555 93 . C T 68.6897 . AB=0.2;ABP=22.5536;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=151;DPB=151;DPRA=0.595238;EPP=13.8677;EPPR=320.045;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=175;QR=5016;RO=146;RPL=5;RPP=13.8677;RPPR=320.045;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=146;SRP=320.045;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:48:48,0:48:1667:0:0:0,-14.4494,-150.321 0/1:25:20,5:20:649:5:175:-8.56794,0,-51.1894 0/0:26:26,0:26:905:0:0:0,-7.82678,-81.767 0/0:52:52,0:52:1795:0:0:0,-15.6536,-161.835 dDocent_Contig_5556 1 . N G 970.965 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=27;CIGAR=1X;DP=27;DPB=27;DPRA=0;EPP=61.6401;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=4;NUMALT=1;ODDS=3.38813e-21;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1056;QR=0;RO=0;RPL=0;RPP=61.6401;RPPR=0;RPR=27;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:6:0,6:0:0:6:240:-21.9754,-1.80618,0 1/1:5:0,5:0:0:5:203:-18.6531,-1.50515,0 1/1:7:0,7:0:0:7:251:-22.9228,-2.10721,0 1/1:9:0,9:0:0:9:362:-32.9431,-2.70927,0 dDocent_Contig_5557 66 . T A 597.376 . AB=0.135688;ABP=623.228;AC=4;AF=0.5;AN=8;AO=73;CIGAR=1X;DP=538;DPB=538;DPRA=0;EPP=161.528;EPPR=1012.74;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2518;QR=16308;RO=465;RPL=73;RPP=161.528;RPPR=1012.74;RPR=0;RUN=1;SAF=73;SAP=161.528;SAR=0;SRF=465;SRP=1012.74;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:168:150,18:150:5328:18:620:-5.55101,0,-429.088 0/1:188:156,32:156:5409:32:1104:-43.0751,0,-430.358 0/1:111:95,16:95:3352:16:551:-16.502,0,-268.485 0/1:71:64,7:64:2219:7:243:-0.835756,0,-178.6 dDocent_Contig_5558 107 . N A 71.2632 . AB=0;ABP=0;AC=2;AF=0.5;AN=4;AO=2;CIGAR=1X;DP=3;DPB=3;DPRA=2;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=70;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:1:0,0:0:0:0:0:0,0,0 ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:70:-6.6474,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_5559 22 . C T 105.771 . AB=0.107143;ABP=190.688;AC=2;AF=0.25;AN=8;AO=16;CIGAR=1X;DP=368;DPB=368;DPRA=0.688889;EPP=37.7539;EPPR=767.369;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.985795;PAO=0;PQA=0;PQR=0;PRO=0;QA=641;QR=14179;RO=352;RPL=0;RPP=37.7539;RPPR=767.369;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=352;SRP=767.369;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:120:120,0:120:4844:0:0:0,-36.1236,-435.84 0/0:108:107,1:107:4306:1:41:0,-28.4167,-383.379 0/1:86:79,7:79:3167:7:287:-0.316651,0,-259.204 0/1:54:46,8:46:1862:8:313:-12.2738,0,-151.525 dDocent_Contig_5560 107 . N A 607.239 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=19;CIGAR=1X;DP=19;DPB=19;DPRA=0;EPP=44.2683;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=653;QR=0;RO=0;RPL=0;RPP=44.2683;RPPR=0;RPR=19;RUN=1;SAF=0;SAP=44.2683;SAR=19;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:6:0,6:0:0:6:213:-19.5164,-1.80618,0 1/1:3:0,3:0:0:3:102:-9.5166,-0.90309,0 1/1:4:0,4:0:0:4:142:-13.1292,-1.20412,0 1/1:6:0,6:0:0:6:196:-17.9594,-1.80618,0 dDocent_Contig_5562 115 . G A 277.619 . AB=0.134454;ABP=279.243;AC=2;AF=0.25;AN=8;AO=46;CIGAR=1X;DP=524;DPB=524;DPRA=0;EPP=102.898;EPPR=1040.97;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=2.77556e-17;PAIRED=0.956522;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1595;QR=16139;RO=478;RPL=0;RPP=102.898;RPPR=1040.97;RPR=46;RUN=1;SAF=0;SAP=102.898;SAR=46;SRF=0;SRP=1040.97;SRR=478;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:164:139,25:139:4717:25:869:-29.1558,0,-375.347 0/0:161:149,12:149:5031:12:422:0,-10.1507,-414.653 0/0:125:123,2:123:4164:2:54:0,-32.5004,-369.837 0/1:74:67,7:67:2227:7:250:-0.570531,0,-178.418 dDocent_Contig_5563 47 . C T 546.901 . AB=0.241379;ABP=70.4008;AC=3;AF=0.375;AN=8;AO=29;CIGAR=1X;DP=141;DPB=141;DPRA=0;EPP=65.983;EPPR=246.215;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.689655;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1079;QR=4430;RO=112;RPL=0;RPP=65.983;RPPR=246.215;RPR=29;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=112;SRP=246.215;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:20,10:20:800:10:347:-22.5286,0,-63.2865 0/1:51:39,12:39:1529:12:465:-26.8478,0,-122.508 0/1:35:29,6:29:1146:6:232:-10.7116,0,-92.8874 0/0:25:24,1:24:955:1:35:0,-4.02712,-82.7483 dDocent_Contig_5564 13 . T A 536.548 . AB=0.141343;ABP=319.209;AC=3;AF=0.375;AN=8;AO=46;CIGAR=1X;DP=413;DPB=413;DPRA=0;EPP=102.898;EPPR=793.426;GTI=0;LEN=1;MEANALT=1.25;MQM=59.3478;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.961538;PAO=0;PQA=0;PQR=0;PRO=0;QA=1833;QR=14488;RO=364;RPL=0;RPP=102.898;RPPR=793.426;RPR=46;RUN=1;SAF=46;SAP=102.898;SAR=0;SRF=364;SRP=793.426;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:130:121,6:121:4813:6:241:0,-16.5578,-411.009 0/1:151:133,18:133:5279:18:730:-20.5253,0,-429.515 0/1:77:65,12:65:2587:12:470:-19.4654,0,-209.789 0/1:55:45,10:45:1809:10:392:-19.062,0,-146.466 dDocent_Contig_5565 32 . T C 1092.15 . AB=0.14664;ABP=535.525;AC=2;AF=0.25;AN=8;AO=91;CIGAR=1X;DP=898;DPB=898;DPRA=0;EPP=200.614;EPPR=1755.39;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.956044;PAIREDR=0.997522;PAO=0;PQA=0;PQR=0;PRO=0;QA=3657;QR=31050;RO=807;RPL=0;RPP=200.614;RPPR=1755.39;RPR=91;RUN=1;SAF=91;SAP=200.614;SAR=0;SRF=807;SRP=1755.39;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:341:286,55:286:11039:55:2204:-95.877,0,-890.302 0/0:263:253,10:253:9732:10:406:0,-42.2703,-838.544 0/1:150:133,17:133:5136:17:684:-16.7356,0,-417.037 0/0:144:135,9:135:5143:9:363:0,-10.3145,-429.809 dDocent_Contig_5567 70 . T C 45.5528 . AB=0.190476;ABP=20.4855;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=111;DPB=111;DPRA=0.988095;EPP=3.32051;EPPR=228.843;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.142857;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=225;QR=3534;RO=104;RPL=7;RPP=18.2106;RPPR=228.843;RPR=0;RUN=1;SAF=4;SAP=3.32051;SAR=3;SRF=104;SRP=228.843;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:38:37,1:37:1264:1:35:0,-7.94051,-110.561 0/0:28:28,0:28:941:0:0:0,-8.42884,-84.9952 0/1:21:17,4:17:587:4:136:-6.25423,0,-46.8344 0/0:24:22,2:22:742:2:54:0,-2.09605,-61.9658 dDocent_Contig_5568 1 . N G 256.245 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=8;CIGAR=1X;DP=8;DPB=8;DPRA=0;EPP=20.3821;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=54.5;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=275;QR=0;RO=0;RPL=0;RPP=20.3821;RPPR=0;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:7:0,7:0:0:7:249:-22.722,-2.10721,0 1/1:1:0,1:0:0:1:26:-2.59983,-0.30103,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_5569 7 . A G 72.1263 . AB=0.128205;ABP=96.662;AC=1;AF=0.125;AN=8;AO=16;CIGAR=2X;DP=227;DPB=227;DPRA=0;EPP=37.7539;EPPR=459.02;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=580;QR=8015;RO=210;RPL=0;RPP=37.7539;RPPR=459.02;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=210;SRP=459.02;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:78:67,10:67:2570:10:352:-8.61057,0,-208.108 0|0:81:77,4:77:2927:4:154:0,-10.1498,-249.374 0|0:39:38,1:38:1448:1:38:0,-7.9429,-126.8 0|0:29:28,1:28:1070:1:36:0,-5.13159,-93.0072 dDocent_Contig_5570 8 . C T 66.0567 . AB=0.136364;ABP=53.5464;AC=1;AF=0.125;AN=8;AO=13;CIGAR=1X;DP=173;DPB=173;DPRA=0;EPP=31.2394;EPPR=350.446;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.923077;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=501;QR=6139;RO=160;RPL=0;RPP=31.2394;RPPR=350.446;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=160;SRP=350.446;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:44:38,6:38:1450:6:232:-8.00361,0,-117.532 0/0:53:50,3:50:1935:3:117:0,-5.04421,-163.479 0/0:48:45,3:45:1728:3:113:0,-3.91003,-145.237 0/0:28:27,1:27:1026:1:39:0,-4.53228,-88.7488 dDocent_Contig_5571 15 . C T 2193.7 . AB=0.423913;ABP=12.2627;AC=4;AF=0.5;AN=8;AO=78;CIGAR=1X;DP=184;DPB=184;DPRA=0;EPP=172.385;EPPR=233.186;GTI=0;LEN=1;MEANALT=1;MQM=58.9744;MQMR=59.8679;NS=4;NUMALT=1;ODDS=0;PAIRED=0.987179;PAIREDR=0.943396;PAO=0;PQA=0;PQR=0;PRO=0;QA=3135;QR=4179;RO=106;RPL=0;RPP=172.385;RPPR=233.186;RPR=78;RUN=1;SAF=78;SAP=172.385;SAR=0;SRF=106;SRP=233.186;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:57:37,20:37:1471:20:801:-54.6125,0,-115.475 0/1:54:23,31:23:883:31:1251:-95.9715,0,-63.5098 0/1:49:29,20:29:1131:20:800:-57.5661,0,-87.2745 0/1:24:17,7:17:694:7:283:-18.6183,0,-55.5627 dDocent_Contig_5572 97 . G A 303.998 . AB=0.290909;ABP=23.8959;AC=2;AF=0.25;AN=8;AO=17;CIGAR=1X;DP=83;DPB=83;DPRA=1.39583;EPP=39.9253;EPPR=146.327;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.939394;PAO=0;PQA=0;PQR=0;PRO=0;QA=587;QR=2193;RO=66;RPL=17;RPP=39.9253;RPPR=146.327;RPR=0;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=66;SRP=146.327;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:16:16,0:16:551:0:0:0,-4.81648,-49.9163 0/1:32:20,12:20:658:12:413:-27.8679,0,-49.8961 0/1:23:19,4:19:628:4:139:-5.929,0,-49.9085 0/0:12:11,1:11:356:1:35:0,-0.113731,-28.8535 dDocent_Contig_5573 33 . G A 2911.28 . AB=0.336283;ABP=81.9328;AC=3;AF=0.375;AN=8;AO=117;CIGAR=1X;DP=389;DPB=389;DPRA=0;EPP=257.073;EPPR=593.651;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.996324;PAO=0;PQA=0;PQR=0;PRO=0;QA=4533;QR=10779;RO=272;RPL=0;RPP=257.073;RPPR=593.651;RPR=117;RUN=1;SAF=117;SAP=257.073;SAR=0;SRF=272;SRP=593.651;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:181:119,62:119:4710:62:2425:-163.937,0,-369.319 0/1:119:76,43:76:3055:43:1650:-112.925,0,-239.202 0/0:50:47,3:47:1802:3:113:0,-4.5122,-151.847 0/1:39:30,9:30:1212:9:345:-19.6648,0,-97.6096 dDocent_Contig_5574 13 . T A 11552 . AB=0.625;ABP=84.4405;AC=4;AF=0.5;AN=8;AO=375;CIGAR=1X3M;DP=600;DPB=600;DPRA=0;EPP=817.312;EPPR=461.191;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=5.55112e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=14890;QR=8240;RO=211;RPL=0;RPP=817.312;RPPR=461.191;RPR=375;RUN=1;SAF=375;SAP=817.312;SAR=0;SRF=211;SRP=461.191;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:153:65,0,88:65:2528:0,88:0,3496:-268.621,-288.188,-495.925,0,-208.128,-181.638 0|1:149:33,8,107:33:1282:8,107:303,4234:-338.507,-323.604,-426.53,0,-80.5051,-73.1311 0|1:175:68,3,104:68:2663:3,104:120,4153:-321.566,-332.151,-550.212,0,-209.074,-187.653 0|1:123:45,2,76:45:1767:2,76:79,3007:-233.902,-240.948,-385.67,0,-138.822,-122.445 dDocent_Contig_5575 13 . G A 7414.96 . AB=0.538126;ABP=8.80562;AC=4;AF=0.5;AN=8;AO=247;CIGAR=1X;DP=459;DPB=459;DPRA=0;EPP=539.364;EPPR=463.362;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=9850;QR=8487;RO=212;RPL=0;RPP=539.364;RPPR=463.362;RPR=247;RUN=1;SAF=247;SAP=539.364;SAR=0;SRF=212;SRP=463.362;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:194:97,97:97:3885:97:3883:-291.063,0,-291.239 0/1:140:48,92:48:1937:92:3641:-285.566,0,-132.381 0/1:70:39,31:39:1552:31:1249:-91.6054,0,-118.848 0/1:55:28,27:28:1113:27:1077:-80.6594,0,-83.8928 dDocent_Contig_5576 24 . C T 168.263 . AB=0.12782;ABP=163.03;AC=3;AF=0.375;AN=8;AO=20;CIGAR=1X;DP=192;DPB=192;DPRA=0;EPP=46.4397;EPPR=376.504;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.982558;PAO=0;PQA=0;PQR=0;PRO=0;QA=789;QR=6847;RO=172;RPL=0;RPP=46.4397;RPPR=376.504;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=172;SRP=376.504;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:59:56,3:56:2243:3:120:0,-6.57308,-190.843 0/1:52:46,6:46:1813:6:243:-6.59441,0,-147.733 0/1:59:54,5:54:2168:5:205:-1.07424,0,-177.529 0/1:22:16,6:16:623:6:221:-13.6172,0,-49.7649 dDocent_Contig_5577 198 . C T 1964.75 . AB=0.256131;ABP=192.591;AC=4;AF=0.5;AN=8;AO=94;CIGAR=1X;DP=367;DPB=367;DPRA=0;EPP=207.129;EPPR=578.578;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.9744;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.992674;PAO=0;PQA=0;PQR=0;PRO=0;QA=3479;QR=10461;RO=273;RPL=94;RPP=207.129;RPPR=595.822;RPR=0;RUN=1;SAF=0;SAP=207.129;SAR=94;SRF=2;SRP=578.578;SRR=271;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:78:54,24:54:2039:24:851:-53.4101,0,-160.259 0/1:95:81,14:81:3102:14:517:-18.265,0,-250.723 0/1:117:87,30:87:3371:30:1119:-65.7845,0,-268.298 0/1:77:51,26:51:1949:26:992:-66.4133,0,-152.47 dDocent_Contig_5578 8 . C A 577.709 . AB=0.139205;ABP=401.007;AC=3;AF=0.375;AN=8;AO=51;CIGAR=1X;DP=399;DPB=399;DPRA=0;EPP=113.755;EPPR=758.683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.991379;PAO=0;PQA=0;PQR=0;PRO=0;QA=1946;QR=13379;RO=348;RPL=0;RPP=113.755;RPPR=758.683;RPR=51;RUN=1;SAF=51;SAP=113.755;SAR=0;SRF=348;SRP=758.683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:136:123,13:123:4740:13:499:-4.31753,0,-385.687 0/1:121:104,17:104:4005:17:652:-22.5913,0,-324.114 0/1:95:76,19:76:2935:19:717:-36.2595,0,-235.716 0/0:47:45,2:45:1699:2:78:0,-6.74494,-145.764 dDocent_Contig_5580 21 . G A 7629.81 . AB=0.415896;ABP=36.2487;AC=4;AF=0.5;AN=8;AO=225;CIGAR=1X3M1X2M;DP=541;DPB=541;DPRA=0;EPP=491.592;EPPR=254.901;GTI=0;LEN=1;MEANALT=3.5;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=8810;QR=4518;RO=116;RPL=0;RPP=491.592;RPPR=254.901;RPR=225;RUN=1;SAF=225;SAP=491.592;SAR=0;SRF=116;SRP=254.901;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:174:25,39,60,50:25:984:39,60,50:1550,2372,1968:-268.597,-148.511,-217.712,-80.9267,-34.2557,-143.806,-114.255,-67.584,0,-180.144 0|1:156:35,26,69,25:35:1342:26,69,25:1031,2716,1012:-212.884,-138.554,-240.849,0,-25.2519,-89.3472,-139.974,-165.229,-26.67,-242.57 0|1:143:36,32,70,5:36:1418:32,70,5:1238,2724,203:-213.013,-122.169,-229.189,0,-14.9749,-95.5818,-207.107,-222.079,-99.9104,-322.255 0|1:68:20,12,26,9:20:774:12,26,9:463,998,361:-75.885,-43.8875,-103.848,0,-25.555,-55.7458,-52.1585,-77.7143,-33.8252,-113.024 dDocent_Contig_5581 31 . C A 137.675 . AB=0.2;ABP=34.2795;AC=2;AF=0.25;AN=8;AO=8;CIGAR=1X2M1X;DP=104;DPB=104;DPRA=0.625;EPP=20.3821;EPPR=211.472;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=316;QR=3809;RO=96;RPL=0;RPP=20.3821;RPPR=211.472;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=96;SRP=211.472;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:50:50,0:50:1987:0:0:0,-15.0515,-179.026 0|0:14:14,0:14:561:0:0:0,-4.21442,-50.8323 0|1:26:23,3:23:912:3:120:-3.36112,0,-74.5622 0|1:14:9,5:9:349:5:196:-13.7996,0,-27.5504 dDocent_Contig_5583 59 . C T 1463.15 . AB=0.196809;ABP=303.228;AC=4;AF=0.5;AN=8;AO=74;CIGAR=1X;DP=376;DPB=376;DPRA=0;EPP=163.699;EPPR=656.623;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2949;QR=11885;RO=301;RPL=74;RPP=163.699;RPPR=656.623;RPR=0;RUN=1;SAF=74;SAP=163.699;SAR=0;SRF=301;SRP=656.623;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:125:93,32:93:3687:32:1275:-77.3836,0,-294.224 0/1:111:87,23:87:3394:23:927:-50.5276,0,-272.303 0/1:89:77,12:77:3062:12:469:-15.7636,0,-248.87 0/1:51:44,7:44:1742:7:278:-10.0378,0,-141.647 dDocent_Contig_5584 17 . T C 2678.04 . AB=0.335526;ABP=74.4403;AC=2;AF=0.25;AN=8;AO=122;CIGAR=1X;DP=587;DPB=587;DPRA=0;EPP=267.93;EPPR=1010.57;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4824;QR=18414;RO=464;RPL=0;RPP=267.93;RPPR=1010.57;RPR=122;RUN=1;SAF=122;SAP=267.93;SAR=0;SRF=464;SRP=1010.57;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:137:82,55:82:3229:55:2154:-152.796,0,-249.446 0/0:174:160,14:160:6379:14:563:0,-1.36633,-522.829 0/1:167:119,47:119:4740:47:1873:-118.406,0,-376.144 0/0:109:103,6:103:4066:6:234:0,-11.3858,-344.504 dDocent_Contig_5585 67 . G A 409.619 . AB=0.0864198;ABP=123.353;AC=0;AF=0;AN=8;AO=7;CIGAR=1X2M1X;DP=169;DPB=169;DPRA=0;EPP=18.2106;EPPR=296.159;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.571429;PAIREDR=0.925926;PAO=0;PQA=0;PQR=0;PRO=0;QA=266;QR=5179;RO=135;RPL=7;RPP=18.2106;RPPR=296.159;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=135;SRP=296.159;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:81:65,7,9:65:2511:7,9:266,353:-9.46691,-7.22507,-211.327,0,-184.407,-203.511 0|0:38:31,0,7:31:1177:0,7:0,273:-13.4946,-22.8266,-119.328,0,-96.8887,-94.7815 0|0:23:16,0,7:16:610:0,7:0,277:-18.3763,-23.1927,-73.2167,0,-50.4149,-48.3077 0|0:27:23,0,4:23:881:0,4:0,164:-7.02209,-13.9458,-86.2205,0,-72.6802,-71.4761 dDocent_Contig_5586 23 . T A 106.742 . AB=0.3125;ABP=7.89611;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=107;DPB=107;DPRA=0.527473;EPP=13.8677;EPPR=224.5;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=187;QR=3980;RO=102;RPL=0;RPP=13.8677;RPPR=224.5;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=102;SRP=224.5;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:30:30,0:30:1174:0:0:0,-9.0309,-105.951 0/0:41:41,0:41:1593:0:0:0,-12.3422,-143.623 0/1:16:11,5:11:436:5:187:-12.3732,0,-34.7793 0/0:20:20,0:20:777:0:0:0,-6.0206,-70.2539 dDocent_Contig_5587 116 . A C 197.124 . AB=0.139037;ABP=214.642;AC=1;AF=0.125;AN=8;AO=28;CIGAR=1X;DP=915;DPB=915;DPRA=0.837349;EPP=63.8115;EPPR=1926.93;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=930;QR=29813;RO=886;RPL=0;RPP=63.8115;RPPR=1926.93;RPR=28;RUN=1;SAF=0;SAP=63.8115;SAR=28;SRF=0;SRP=1926.93;SRR=886;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:300:299,0:299:10123:0:0:0,-90.008,-910.717 0/0:198:198,0:198:6556:0:0:0,-59.6039,-590.158 0/0:230:228,2:228:7629:2:70:0,-62.5895,-680.043 0/1:187:161,26:161:5505:26:860:-21.4114,0,-439.314 dDocent_Contig_5588 192 . A T 309.273 . AB=0.195402;ABP=73.1214;AC=3;AF=0.375;AN=8;AO=20;CIGAR=1X;DP=127;DPB=127;DPRA=0;EPP=46.4397;EPPR=235.358;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=801;QR=4076;RO=107;RPL=20;RPP=46.4397;RPPR=235.358;RPR=0;RUN=1;SAF=0;SAP=46.4397;SAR=20;SRF=0;SRP=235.358;SRR=107;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:20,4:20:765:4:163:-7.83371,0,-61.9527 0/1:21:15,6:15:577:6:244:-16.0172,0,-45.9486 0/1:42:35,7:35:1344:7:275:-12.4742,0,-108.597 0/0:40:37,3:37:1390:3:119:0,-0.945805,-114.283 dDocent_Contig_5589 13 . T G 6081.25 . AB=0.560563;ABP=14.3203;AC=4;AF=0.5;AN=8;AO=199;CIGAR=2X;DP=355;DPB=355;DPRA=0;EPP=435.133;EPPR=267.93;GTI=0;LEN=1;MEANALT=1.75;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7913;QR=4901;RO=122;RPL=0;RPP=435.133;RPPR=267.93;RPR=199;RUN=1;SAF=199;SAP=435.133;SAR=0;SRF=122;SRP=267.93;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:149:45,71,31:45:1801:71,31:2842,1236:-220.571,0,-126.982,-132.346,-46.5843,-271.369 0|1:62:12,49,0:12:476:49,0:1929,0:-155.044,0,-24.4172,-158.656,-39.1677,-197.837 0|1:57:23,34,0:23:927:34,0:1373,0:-106.669,0,-66.5735,-113.592,-76.8085,-189.998 0|1:87:42,45,0:42:1697:45,0:1769,0:-133.239,0,-126.76,-145.883,-140.307,-285.791 dDocent_Contig_5590 8 . C T 35.1703 . AB=0.121951;ABP=53.9075;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=130;DPB=130;DPRA=1.38202;EPP=13.8677;EPPR=265.828;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.984;PAO=0;PQA=0;PQR=0;PRO=0;QA=191;QR=4828;RO=125;RPL=0;RPP=13.8677;RPPR=274.444;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=124;SRP=265.828;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:33:33,0:33:1284:0:0:0,-9.93399,-115.849 0/1:41:36,5:36:1371:5:191:-5.21587,0,-111.331 0/0:34:34,0:34:1319:0:0:0,-10.235,-118.996 0/0:22:22,0:22:854:0:0:0,-6.62266,-77.1822 dDocent_Contig_5591 50 . C T 1117.65 . AB=0.175793;ABP=319.814;AC=3;AF=0.375;AN=8;AO=65;CIGAR=1X;DP=413;DPB=413;DPRA=0;EPP=144.156;EPPR=758.683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2610;QR=13674;RO=348;RPL=65;RPP=144.156;RPPR=758.683;RPR=0;RUN=1;SAF=65;SAP=144.156;SAR=0;SRF=348;SRP=758.683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:131:96,35:96:3752:35:1405:-87.264,0,-298.256 0/0:66:62,4:62:2433:4:158:0,-5.26932,-204.526 0/1:112:100,12:100:3933:12:487:-10.4652,0,-320.258 0/1:104:90,14:90:3556:14:560:-19.4335,0,-288.764 dDocent_Contig_5592 174 . T A 159.95 . AB=0.234043;ABP=31.8863;AC=3;AF=0.375;AN=8;AO=11;CIGAR=1X;DP=62;DPB=62;DPRA=1.04444;EPP=26.8965;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=369;QR=1914;RO=51;RPL=11;RPP=26.8965;RPPR=113.755;RPR=0;RUN=1;SAF=0;SAP=26.8965;SAR=11;SRF=0;SRP=113.755;SRR=51;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:15:15,0:15:582:0:0:0,-4.51545,-52.7112 0/1:11:8,3:8:290:3:114:-7.32089,0,-23.1203 0/1:27:20,7:20:730:7:221:-12.0668,0,-57.8691 0/1:9:8,1:8:312:1:34:-0.689641,0,-25.7314 dDocent_Contig_5593 82 . G A 526.633 . AB=0.240602;ABP=80.7425;AC=3;AF=0.375;AN=8;AO=39;CIGAR=1X;DP=226;DPB=226;DPRA=0;EPP=87.6977;EPPR=409.076;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=0.769231;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1319;QR=6236;RO=187;RPL=39;RPP=87.6977;RPPR=409.076;RPR=0;RUN=1;SAF=39;SAP=87.6977;SAR=0;SRF=187;SRP=409.076;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:93:86,7:86:2821:7:240:0,-6.06062,-232.2 0/1:79:60,19:60:2037:19:637:-33.8652,0,-159.825 0/1:35:26,9:26:869:9:302:-16.9706,0,-67.9798 0/1:19:15,4:15:509:4:140:-7.22536,0,-40.4145 dDocent_Contig_5594 19 . C T 48.0892 . AB=0.135135;ABP=45.7942;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=95;DPB=95;DPRA=1.91379;EPP=13.8677;EPPR=198.443;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.977778;PAO=0;PQA=0;PQR=0;PRO=0;QA=192;QR=3631;RO=90;RPL=0;RPP=13.8677;RPPR=198.443;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=90;SRP=198.443;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:26:26,0:26:1060:0:0:0,-7.82678,-95.6858 0/0:12:12,0:12:474:0:0:0,-3.61236,-43.0061 0/1:37:32,5:32:1293:5:192:-6.50788,0,-105.494 0/0:20:20,0:20:804:0:0:0,-6.0206,-72.677 dDocent_Contig_5595 13 . T A 597.279 . AB=0.154762;ABP=263.897;AC=3;AF=0.375;AN=8;AO=46;CIGAR=1X;DP=345;DPB=345;DPRA=0;EPP=102.898;EPPR=652.281;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1838;QR=11927;RO=299;RPL=0;RPP=102.898;RPPR=652.281;RPR=46;RUN=1;SAF=46;SAP=102.898;SAR=0;SRF=299;SRP=652.281;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:115:98,17:98:3907:17:683:-27.1813,0,-317.006 0/0:93:86,7:86:3450:7:283:0,-2.15279,-284.695 0/1:89:78,11:78:3105:11:432:-12.4401,0,-252.738 0/1:48:37,11:37:1465:11:440:-25.5045,0,-117.642 dDocent_Contig_5596 46 . T G 302.447 . AB=0.173077;ABP=99.5573;AC=1;AF=0.125;AN=8;AO=22;CIGAR=1X;DP=558;DPB=558;DPRA=1.0365;EPP=50.7827;EPPR=1164.75;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=853;QR=21404;RO=535;RPL=0;RPP=50.7827;RPPR=1164.75;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=535;SRP=1164.75;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:189:189,0:189:7608:0:0:0,-56.8947,-684.31 0/0:180:176,4:176:6992:4:156:0,-39.7683,-614.544 0/1:104:85,18:85:3416:18:697:-31.9437,0,-276.378 0/0:85:85,0:85:3388:0:0:0,-25.5875,-304.969 dDocent_Contig_5597 19 . T G 4723.2 . AB=0.28215;ABP=217.778;AC=2;AF=0.25;AN=8;AO=147;CIGAR=1X7M1X3M;DP=521;DPB=521;DPRA=0;EPP=322.217;EPPR=361.303;GTI=0;LEN=1;MEANALT=5.5;MQM=58.2449;MQMR=60;NS=4;NUMALT=5;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5716;QR=6556;RO=165;RPL=0;RPP=322.217;RPPR=361.303;RPR=147;RUN=1;SAF=147;SAP=322.217;SAR=0;SRF=165;SRP=361.303;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:228:66,7,22,15,78,38:66:2632:7,22,15,78,38:257,853,595,3047,1504:-230.224,-229.089,-443.742,-180.021,-375.778,-390.158,-201.114,-396.872,-347.803,-413.359,0,-195.759,-146.69,-167.783,-193.28,-126.321,-322.079,-273.011,-294.104,-92.9909,-331.643 1|0:135:35,1,10,9,45,35:35:1395:1,10,9,45,35:40,380,363,1729,1399:-131.649,-139.077,-253.657,-111.026,-222.798,-222.896,-112.261,-224.034,-195.983,-224.433,-0.350487,-112.122,-84.0717,-85.3066,-101.683,-26.9518,-138.727,-110.676,-111.911,0,-131.299 0|0:88:46,0,9,1,15,17:46:1818:0,9,1,15,17:0,352,40,589,692:-43.2427,-57.0901,-206.692,-28.1507,-177.751,-175.042,-53.7949,-203.396,-174.456,-203.095,-8.65671,-158.256,-129.315,-154.961,-153.74,0,-149.605,-120.664,-146.31,-101.169,-144.487 0|0:70:18,7,10,1,9,24:18:711:7,10,1,9,24:281,387,40,351,970:-74.5565,-56.8201,-113.218,-48.1886,-83.5382,-103.683,-76.68,-112.03,-103.398,-134.884,-51.1436,-86.4934,-77.8613,-106.353,-106.939,0,-35.3512,-26.7198,-55.2118,-29.6748,-51.2824 dDocent_Contig_5599 38 . A G 276.087 . AB=0.131868;ABP=217.246;AC=1;AF=0.125;AN=8;AO=44;CIGAR=1X;DP=825;DPB=825;DPRA=0;EPP=98.5551;EPPR=1698.93;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.993598;PAO=0;PQA=0;PQR=0;PRO=0;QA=1739;QR=30940;RO=781;RPL=0;RPP=98.5551;RPPR=1698.93;RPR=44;RUN=1;SAF=44;SAP=98.5551;SAR=0;SRF=781;SRP=1698.93;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:292:284,8:284:11239:8:319:0,-58.8239,-981.736 0/0:256:248,8:248:9821:8:325:0,-47.4442,-853.701 0/1:182:158,24:158:6289:24:931:-29.3077,0,-510.99 0/0:95:91,4:91:3591:4:164:0,-13.448,-308.097 dDocent_Contig_5601 10 . A G 982.935 . AB=0.191176;ABP=228.332;AC=3;AF=0.375;AN=8;AO=55;CIGAR=1X;DP=332;DPB=332;DPRA=0;EPP=122.441;EPPR=604.508;GTI=0;LEN=1;MEANALT=1;MQM=50.0545;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.981818;PAIREDR=0.801444;PAO=0;PQA=0;PQR=0;PRO=0;QA=2217;QR=11004;RO=277;RPL=0;RPP=122.441;RPPR=604.508;RPR=55;RUN=1;SAF=55;SAP=122.441;SAR=0;SRF=277;SRP=604.508;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:141:107,34:107:4237:34:1367:-77.9872,0,-338.857 0/1:58:48,10:48:1919:10:404:-18.8708,0,-155.452 0/1:73:65,8:65:2579:8:324:-6.83354,0,-210.271 0/0:60:57,3:57:2269:3:122:0,-7.70902,-194.019 dDocent_Contig_5602 36 . C T 2510.5 . AB=0.271739;ABP=44.6459;AC=1;AF=0.125;AN=8;AO=25;CIGAR=1X2M1X;DP=161;DPB=161;DPRA=0;EPP=57.2971;EPPR=124.613;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=982;QR=2141;RO=56;RPL=0;RPP=57.2971;RPPR=124.613;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:35:18,0,17:18:673:0,17:0,681:-51.0811,-56.4997,-111.576,0,-55.4635,-50.346 1|0:53:14,19,20:14:537:19,20:746,783:-77.4534,-20.3164,-58.6614,-17.2921,0,-55.3355 0|0:39:9,6,24:9:335:6,24:236,923:-73.0457,-56.3408,-81.9451,0,-7.98029,-20.1764 0|0:34:15,0,19:15:596:0,19:0,742:-56.8673,-61.3828,-110.454,0,-49.4654,-43.7458 dDocent_Contig_5603 1 . N G 157.695 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=163;QR=0;RO=0;RPL=0;RPP=11.6962;RPPR=0;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:1:0,1:0:0:1:41:-4.09457,-0.30103,0 1/1:3:0,3:0:0:3:122:-11.3725,-0.90309,0 ./.:.:.:.:.:.:.:. dDocent_Contig_5605 42 . T A 617.318 . AB=0.174129;ABP=188.407;AC=3;AF=0.375;AN=8;AO=35;CIGAR=1M1X3M;DP=244;DPB=251.2;DPRA=1.55814;EPP=79.0118;EPPR=430.79;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.971429;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1386;QR=7798;RO=197;RPL=0;RPP=79.0118;RPPR=430.79;RPR=35;RUN=1;SAF=35;SAP=79.0118;SAR=0;SRF=197;SRP=430.79;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:77:57,2,18:57:2247:2,18:77,716:-41.7982,-52.6361,-236.894,0,-178.55,-179.453 0|1:87:69,5,13:69:2741:5,13:192,512:-21.3553,-26.37,-250.522,0,-209.908,-221.753 0|0:43:41,2,0:41:1633:2,0:79,0:0,-5.44705,-139.71,-12.3422,-140.312,-146.813 0|1:37:30,3,4:30:1177:3,4:116,158:-3.97501,-3.48188,-99.3679,0,-87.2695,-95.5925 dDocent_Contig_5606 23 . G T 9607.55 . AB=0.482861;ABP=4.72224;AC=4;AF=0.5;AN=8;AO=324;CIGAR=5X;DP=671;DPB=671;DPRA=0;EPP=706.567;EPPR=602.337;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=12778;QR=11039;RO=276;RPL=0;RPP=706.567;RPPR=602.337;RPR=324;RUN=1;SAF=324;SAP=706.567;SAR=0;SRF=276;SRP=602.337;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:257:83,49,125:83:3307:49,125:1954,4933:-380.878,-244.952,-502.519,0,-111.405,-234.686 0|1:195:72,12,111:72:2899:12,111:483,4368:-337.611,-319.477,-554.799,0,-199.124,-205.516 0|1:102:44,9,49:44:1746:9,49:363,1942:-146.591,-129.913,-270.923,0,-113.79,-128.963 0|1:117:77,0,39:77:3087:0,39:0,1535:-103.072,-126.251,-380.591,0,-254.327,-242.586 dDocent_Contig_5607 19 . C A 829.162 . AB=0.151261;ABP=380.135;AC=2;AF=0.25;AN=8;AO=54;CIGAR=1X;DP=554;DPB=554;DPRA=1.81218;EPP=120.27;EPPR=1088.75;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2146;QR=20007;RO=500;RPL=0;RPP=120.27;RPPR=1088.75;RPR=54;RUN=1;SAF=54;SAP=120.27;SAR=0;SRF=500;SRP=1088.75;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:153:117,36:117:4692:36:1443:-84.0656,0,-376.129 0/1:204:186,18:186:7466:18:703:-2.18248,0,-610.144 0/0:103:103,0:103:4094:0:0:0,-31.0061,-368.444 0/0:94:94,0:94:3755:0:0:0,-28.2968,-337.961 dDocent_Contig_5608 93 . G T 9533.76 . AB=0.505898;ABP=3.24082;AC=4;AF=0.5;AN=8;AO=386;CIGAR=1X;DP=763;DPB=763;DPRA=0;EPP=841.199;EPPR=821.655;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=13217;QR=14382;RO=377;RPL=386;RPP=841.199;RPPR=821.655;RPR=0;RUN=1;SAF=386;SAP=841.199;SAR=0;SRF=0;SRP=821.655;SRR=377;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:194:96,98:96:3644:98:3349:-243.242,0,-269.674 0/1:252:123,129:123:4707:129:4461:-325.827,0,-347.797 0/1:181:90,91:90:3476:91:3100:-224.753,0,-258.471 0/1:136:68,68:68:2555:68:2307:-166.952,0,-189.2 dDocent_Contig_5609 129 . A T 2288.15 . AB=0.280802;ABP=148.661;AC=4;AF=0.5;AN=8;AO=98;CIGAR=1X;DP=349;DPB=349;DPRA=0;EPP=215.815;EPPR=548.05;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3778;QR=9537;RO=251;RPL=0;RPP=215.815;RPPR=548.05;RPR=98;RUN=1;SAF=0;SAP=215.815;SAR=98;SRF=0;SRP=548.05;SRR=251;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:148:129,19:129:4896:19:726:-21.1163,0,-396.106 0/1:41:8,33:8:302:33:1287:-103.771,0,-15.193 0/1:87:50,37:50:1929:37:1410:-100.989,0,-147.661 0/1:73:64,9:64:2410:9:355:-10.3368,0,-195.13 dDocent_Contig_5610 111 . G A 9419.87 . AB=0.566917;ABP=28.8753;AC=4;AF=0.5;AN=8;AO=377;CIGAR=1X;DP=665;DPB=665;DPRA=0;EPP=821.655;EPPR=626.223;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=2.77556e-17;PAIRED=0.976127;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=12760;QR=9688;RO=287;RPL=0;RPP=821.655;RPPR=626.223;RPR=377;RUN=1;SAF=0;SAP=821.655;SAR=377;SRF=0;SRP=626.223;SRR=287;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:252:145,107:145:4914:107:3658:-253.583,0,-366.582 0/1:126:28,98:28:935:98:3324:-261.458,0,-46.5241 0/1:131:61,70:61:2057:70:2393:-176.2,0,-145.967 0/1:156:53,102:53:1782:102:3385:-258.144,0,-113.926 dDocent_Contig_5611 31 . C T 175.251 . AB=0.153846;ABP=84.19;AC=2;AF=0.25;AN=8;AO=15;CIGAR=1X;DP=351;DPB=351;DPRA=0.502381;EPP=35.5824;EPPR=732.625;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=607;QR=13511;RO=336;RPL=0;RPP=35.5824;RPPR=732.625;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=336;SRP=732.625;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:140:140,0:140:5600:0:0:0,-42.1442,-503.811 0/0:133:130,3:130:5236:3:122:0,-28.6645,-459.701 0/1:36:29,7:29:1177:7:286:-15.2777,0,-95.3675 0/1:42:37,5:37:1498:5:199:-5.6453,0,-122.415 dDocent_Contig_5612 13 . A T 50.503 . AB=0.101449;ABP=193.408;AC=2;AF=0.25;AN=8;AO=24;CIGAR=1X;DP=343;DPB=343;DPRA=1.95333;EPP=55.1256;EPPR=695.71;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=924;QR=12705;RO=319;RPL=0;RPP=55.1256;RPPR=695.71;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=319;SRP=695.71;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:155:145,10:145:5813:10:386:0,-11.5704,-487.873 0/1:88:80,8:80:3163:8:300:-0.856565,0,-258.254 0/1:50:44,6:44:1744:6:238:-6.74154,0,-142.123 0/0:50:50,0:50:1985:0:0:0,-15.0515,-178.852 dDocent_Contig_5613 1 . N G 190.831 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=5;CIGAR=1X;DP=5;DPB=5;DPRA=0;EPP=13.8677;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=200;QR=0;RO=0;RPL=0;RPP=13.8677;RPPR=0;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:82:-7.77968,-0.60206,0 1/1:3:0,3:0:0:3:118:-11.0016,-0.90309,0 dDocent_Contig_5615 22 . G A 210.861 . AB=0.380952;ABP=5.59539;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X;DP=75;DPB=75;DPRA=0.744186;EPP=22.5536;EPPR=146.327;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.984848;PAO=0;PQA=0;PQR=0;PRO=0;QA=326;QR=2599;RO=66;RPL=0;RPP=22.5536;RPPR=146.327;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=66;SRP=146.327;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:13,8:13:522:8:316:-22.484,0,-41.0054 0/0:22:22,0:22:861:0:0:0,-6.62266,-77.7939 0/0:21:21,0:21:830:0:0:0,-6.32163,-75.012 0/0:11:10,1:10:386:1:10:0,-2.31133,-34.0868 dDocent_Contig_5617 106 . N A 6204.08 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=205;CIGAR=2X2M1X;DP=205;DPB=205;DPRA=0;EPP=448.162;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=6874;QR=0;RO=0;RPL=0;RPP=448.162;RPPR=0;RPR=205;RUN=1;SAF=0;SAP=448.162;SAR=205;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:79:0,79:0:0:79:2664:-240.019,-23.7814,0 1|1:82:0,82:0:0:82:2729:-245.866,-24.6845,0 1|1:28:0,28:0:0:28:943:-85.1795,-8.42884,0 1|1:16:0,16:0:0:16:538:-48.7407,-4.81648,0 dDocent_Contig_5618 15 . T C 2345.21 . AB=0.482143;ABP=3.47562;AC=4;AF=0.5;AN=8;AO=81;CIGAR=1X;DP=168;DPB=168;DPRA=0;EPP=178.9;EPPR=174.956;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.954023;PAO=0;PQA=0;PQR=0;PRO=0;QA=3236;QR=3460;RO=87;RPL=0;RPP=178.9;RPPR=191.928;RPR=81;RUN=1;SAF=81;SAP=178.9;SAR=0;SRF=85;SRP=174.956;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:69:28,41:28:1132:41:1635:-126.604,0,-81.3889 0/1:42:32,10:32:1266:10:395:-23.2647,0,-101.558 0/1:39:14,25:14:552:25:1007:-79.1804,0,-38.278 0/1:18:13,5:13:510:5:199:-12.8694,0,-40.8239 dDocent_Contig_5619 18 . A T 485.822 . AB=0.247619;ABP=61.1024;AC=4;AF=0.5;AN=8;AO=26;CIGAR=1X;DP=105;DPB=105;DPRA=0;EPP=59.4686;EPPR=174.557;GTI=0;LEN=1;MEANALT=1;MQM=51.6538;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1028;QR=3108;RO=79;RPL=0;RPP=59.4686;RPPR=174.557;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=79;SRP=174.557;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:26,3:26:1044:3:116:-2.06988,0,-85.5211 0/1:33:22,11:22:879:11:425:-25.5845,0,-69.4868 0/1:32:23,9:23:868:9:366:-21.3256,0,-68.779 0/1:11:8,3:8:317:3:121:-6.91632,0,-25.5842 dDocent_Contig_5620 67 . T A 33.799 . AB=0.157895;ABP=22.325;AC=2;AF=0.25;AN=8;AO=3;CIGAR=1X;DP=66;DPB=66;DPRA=0.404255;EPP=9.52472;EPPR=139.813;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=121;QR=2509;RO=63;RPL=3;RPP=9.52472;RPPR=139.813;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=63;SRP=139.813;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:24:24,0:24:961:0:0:0,-7.22472,-86.7923 0/0:23:23,0:23:907:0:0:0,-6.92369,-81.9374 0/1:9:7,2:7:281:2:82:-5.07041,0,-22.9524 0/1:10:9,1:9:360:1:39:-0.886264,0,-29.7535 dDocent_Contig_5621 140 . A T 50.1439 . AB=0.121622;ABP=95.0338;AC=2;AF=0.25;AN=8;AO=11;CIGAR=1X;DP=193;DPB=193;DPRA=0.599034;EPP=26.8965;EPPR=398.218;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=390;QR=6606;RO=182;RPL=0;RPP=26.8965;RPPR=398.218;RPR=11;RUN=1;SAF=0;SAP=26.8965;SAR=11;SRF=0;SRP=398.218;SRR=182;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:54:47,7:47:1707:7:248:-6.40776,0,-137.657 0/0:69:69,0:69:2490:0:0:0,-20.7711,-224.337 0/0:50:48,2:48:1745:2:72:0,-8.21486,-150.492 0/1:20:18,2:18:664:2:70:-0.626516,0,-54.0737 dDocent_Contig_5624 29 . T A 203.591 . AB=0;ABP=0;AC=6;AF=0.75;AN=8;AO=6;CIGAR=1X;DP=7;DPB=7;DPRA=2;EPP=16.0391;EPPR=5.18177;GTI=0;LEN=1;MEANALT=1;MQM=49.3333;MQMR=46;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=233;QR=39;RO=1;RPL=0;RPP=16.0391;RPPR=5.18177;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=1;SRP=5.18177;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1:0,1:0:0:1:41:-2.09571,-0.30103,0 1/1:4:0,4:0:0:4:153:-13.7622,-1.20412,0 1/1:1:0,1:0:0:1:39:-3.89656,-0.30103,0 0/0:1:1,0:1:39:0:0:0,-0.30103,-3.821 dDocent_Contig_5625 77 . T C 223.151 . AB=0.261905;ABP=23.691;AC=2;AF=0.25;AN=8;AO=11;CIGAR=1X;DP=156;DPB=156;DPRA=0.368421;EPP=26.8965;EPPR=317.874;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.668966;PAO=0;PQA=0;PQR=0;PRO=0;QA=418;QR=5534;RO=145;RPL=11;RPP=26.8965;RPPR=317.874;RPR=0;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=145;SRP=317.874;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:59:59,0:59:2251:0:0:0,-17.7608,-202.812 0/0:55:55,0:55:2090:0:0:0,-16.5566,-188.331 0/1:27:19,8:19:734:8:301:-19.3181,0,-58.2636 0/1:15:12,3:12:459:3:117:-6.39493,0,-37.1439 dDocent_Contig_5626 11 . T G 326.349 . AB=0.20155;ABP=102.814;AC=2;AF=0.25;AN=8;AO=37;CIGAR=1X;DP=267;DPB=267;DPRA=0;EPP=83.3548;EPPR=495.935;GTI=0;LEN=1;MEANALT=1.25;MQM=34.3784;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.969163;PAO=0;PQA=0;PQR=0;PRO=0;QA=1283;QR=9112;RO=227;RPL=0;RPP=83.3548;RPPR=495.935;RPR=37;RUN=1;SAF=0;SAP=83.3548;SAR=37;SRF=227;SRP=495.935;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:55:50,5:50:2010:5:176:0,-3.03533,-167.564 0/1:100:75,22:75:3012:22:762:-33.3241,0,-241.617 0/0:83:77,6:77:3093:6:207:0,-8.32163,-261.774 0/1:29:25,4:25:997:4:138:-2.68695,0,-81.295 dDocent_Contig_5627 32 . C T 491.064 . AB=0.168675;ABP=161.292;AC=2;AF=0.25;AN=8;AO=30;CIGAR=1X;DP=210;DPB=210;DPRA=3.55556;EPP=68.1545;EPPR=393.875;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1203;QR=7192;RO=180;RPL=0;RPP=68.1545;RPPR=393.875;RPR=30;RUN=1;SAF=30;SAP=68.1545;SAR=0;SRF=180;SRP=393.875;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:86:75,11:75:2972:11:448:-14.7874,0,-241.682 0/1:80:63,17:63:2531:17:683:-37.7168,0,-203.842 0/0:26:24,2:24:974:2:72:0,-0.990409,-81.1208 0/0:18:18,0:18:715:0:0:0,-5.41854,-64.6731 dDocent_Contig_5628 115 . A T 549.875 . AB=0.333333;ABP=24.0012;AC=4;AF=0.5;AN=8;AO=29;CIGAR=1X;DP=87;DPB=87;DPRA=0;EPP=65.983;EPPR=128.956;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=969;QR=1931;RO=58;RPL=0;RPP=65.983;RPPR=128.956;RPR=29;RUN=1;SAF=0;SAP=65.983;SAR=29;SRF=0;SRP=128.956;SRR=58;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:12,2:12:382:2:70:-2.43298,0,-30.4737 0/1:33:15,18:15:503:18:594:-43.8374,0,-35.6554 0/1:22:17,5:17:566:5:171:-9.10407,0,-44.6343 0/1:18:14,4:14:480:4:134:-6.97267,0,-38.109 dDocent_Contig_5630 7 . A T 2450.65 . AB=0.400862;ABP=22.8156;AC=4;AF=0.5;AN=8;AO=93;CIGAR=1X;DP=232;DPB=232;DPRA=0;EPP=204.957;EPPR=300.502;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3567;QR=5263;RO=137;RPL=0;RPP=204.957;RPPR=300.502;RPR=93;RUN=1;SAF=93;SAP=204.957;SAR=0;SRF=137;SRP=300.502;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:93:35,58:35:1349:58:2227:-172.656,0,-93.7 0/1:75:52,22:52:1980:22:839:-53.2791,0,-155.89 0/1:40:32,7:32:1239:7:273:-12.8692,0,-99.7411 0/1:24:18,6:18:695:6:228:-13.6594,0,-55.6595 dDocent_Contig_5631 54 . G C 109.924 . AB=0.108974;ABP=210.191;AC=2;AF=0.25;AN=8;AO=17;CIGAR=1X;DP=339;DPB=339;DPRA=0.852459;EPP=39.9253;EPPR=702.224;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=665;QR=12636;RO=322;RPL=17;RPP=39.9253;RPPR=702.224;RPR=0;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=322;SRP=702.224;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:124:124,0:124:4901:0:0:0,-37.3277,-440.997 0/1:92:84,8:84:3283:8:314:-0.927924,0,-267.853 0/1:64:55,9:55:2184:9:351:-12.6823,0,-177.472 0/0:59:59,0:59:2268:0:0:0,-17.7608,-204.286 dDocent_Contig_5632 24 . A T 479.116 . AB=0.0666667;ABP=100.871;AC=4;AF=0.5;AN=8;AO=4;CIGAR=1X3M;DP=190;DPB=190;DPRA=0;EPP=11.6962;EPPR=337.417;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=158;QR=6092;RO=154;RPL=0;RPP=11.6962;RPPR=337.417;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=154;SRP=337.417;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:88:76,12,0:76:3001:12,0:475,0:-16.6118,0,-243.712,-39.4901,-247.325,-286.419 0|1:60:50,5,4:50:1986:5,4:195,158:-0.987547,0,-162.017,-3.02716,-150.52,-165.345 0|1:26:18,8,0:18:704:8,0:305,0:-19.9822,0,-55.8618,-25.4008,-58.27,-83.2868 0|1:16:10,6,0:10:401:6,0:235,0:-16.7051,0,-31.6334,-19.7154,-33.4396,-52.7603 dDocent_Contig_5633 16 . T C 269.314 . AB=0.127907;ABP=209.856;AC=1;AF=0.125;AN=8;AO=30;CIGAR=1X;DP=499;DPB=499;DPRA=1.82684;EPP=68.1545;EPPR=1021.43;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.833333;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1213;QR=18614;RO=469;RPL=0;RPP=68.1545;RPPR=1021.43;RPR=30;RUN=1;SAF=30;SAP=68.1545;SAR=0;SRF=469;SRP=1021.43;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:145:144,1:144:5751:1:40:0,-39.6537,-513.399 0/1:172:150,22:150:5977:22:890:-28.6304,0,-485.925 0/0:105:98,7:98:3866:7:283:0,-5.76457,-322.09 0/0:77:77,0:77:3020:0:0:0,-23.1793,-271.9 dDocent_Contig_5634 114 . A T 136.584 . AB=0.191489;ABP=41.8658;AC=1;AF=0.125;AN=8;AO=28;CIGAR=1X;DP=442;DPB=442;DPRA=0;EPP=63.8115;EPPR=902;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=976;QR=14708;RO=414;RPL=0;RPP=63.8115;RPPR=902;RPR=28;RUN=1;SAF=0;SAP=63.8115;SAR=28;SRF=0;SRP=902;SRR=414;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:195:187,8:187:6680:8:269:0,-34.1656,-576.735 0/0:102:94,8:94:3314:8:283:0,-4.89291,-272.663 0/0:98:95,3:95:3345:3:100:0,-20.1708,-291.931 0/1:47:38,9:38:1369:9:324:-15.3574,0,-109.361 dDocent_Contig_5635 59 . C T 91.0875 . AB=0.0454545;ABP=476.786;AC=0;AF=0;AN=8;AO=13;CIGAR=1X2M1X;DP=443;DPB=442.75;DPRA=0;EPP=31.2394;EPPR=847.713;GTI=0;LEN=1;MEANALT=2.66667;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=2.77556e-17;PAIRED=0;PAIREDR=0.619537;PAO=0;PQA=0;PQR=0;PRO=0;QA=512;QR=14943;RO=389;RPL=13;RPP=31.2394;RPPR=847.713;RPR=0;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=389;SRP=847.713;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:178:156,5,16:156:6022:5,16:198,614:-3.46173,-34.1186,-527.148,0,-478.26,-489.741 0|0:86:70,7,9:70:2699:7,9:275,347:-7.41363,-5.86431,-225.37,0,-198.988,-218.897 0|0:107:98,1,7:98:3771:1,7:39,268:0,-26.2909,-335.595,-7.41942,-313.906,-315.005 0|0:72:65,0,7:65:2451:0,7:0,277:-3.62505,-23.192,-224.005,0,-201.207,-199.099 dDocent_Contig_5636 19 . G T 1172.53 . AB=0.0639098;ABP=442.399;AC=0;AF=0;AN=8;AO=17;CIGAR=1M1X3M;DP=266;DPB=243.2;DPRA=0;EPP=39.9253;EPPR=419.933;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.96875;PAO=0;PQA=0;PQR=0;PRO=0;QA=677;QR=7422;RO=192;RPL=0;RPP=39.9253;RPPR=419.933;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=192;SRP=419.933;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:66:48,15,3:48:1872:15,3:587,113:-33.824,0,-149.369,-39.0173,-144.627,-191.986 0|0:76:58,14,4:58:2242:14,4:547,164:-27.4891,0,-179.907,-31.4082,-170.583,-214.343 0|0:92:60,23,9:60:2293:23,9:891,365:-55.106,0,-181.179,-43.0622,-157.999,-228.472 0|0:32:26,5,1:26:1015:5,1:195,35:-8.23199,0,-81.9722,-13.2176,-80.6311,-96.3557 dDocent_Contig_5637 1 . N G 245.597 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=7;CIGAR=1X;DP=7;DPB=7;DPRA=0;EPP=18.2106;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=41.5714;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=285;QR=0;RO=0;RPL=0;RPP=18.2106;RPPR=0;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1:0,1:0:0:1:41:-4.09317,-0.30103,0 1/1:3:0,3:0:0:3:122:-10.9412,-0.90309,0 1/1:3:0,3:0:0:3:122:-9.04708,-0.90309,0 ./.:.:.:.:.:.:.:. dDocent_Contig_5638 12 . C G 338.551 . AB=0.172414;ABP=111.135;AC=2;AF=0.25;AN=8;AO=27;CIGAR=1X;DP=261;DPB=261;DPRA=0;EPP=61.6401;EPPR=511.135;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1080;QR=9324;RO=234;RPL=0;RPP=61.6401;RPPR=511.135;RPR=27;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=234;SRP=511.135;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:74:63,11:63:2485:11:437:-17.4043,0,-201.521 0/0:111:106,5:106:4234:5:204:0,-14.6703,-362.272 0/1:42:33,9:33:1326:9:357:-19.8487,0,-106.958 0/0:34:32,2:32:1279:2:82:0,-2.45534,-107.6 dDocent_Contig_5639 10 . A T 59302.4 . AB=0.875;ABP=393.875;AC=7;AF=0.875;AN=8;AO=1771;CIGAR=2X;DP=1873;DPB=1873;DPRA=0;EPP=3848.69;EPPR=181.071;GTI=0;LEN=1;MEANALT=2.5;MQM=54.6917;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.994918;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=70247;QR=3289;RO=82;RPL=0;RPP=3848.69;RPPR=181.071;RPR=1771;RUN=1;SAF=1771;SAP=3848.69;SAR=0;SRF=82;SRP=181.071;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:320:35,280:35:1399:280:11063:-860.963,0,-30.9458 1|1:558:18,537:18:731:537:21343:-1818.66,-101.337,0 1|1:660:17,634:17:674:634:25168:-2168.23,-135.365,0 1|1:335:12,320:12:485:320:12673:-1083.78,-56.3403,0 dDocent_Contig_5641 92 . A C 99.2094 . AB=0.144578;ABP=94.0813;AC=2;AF=0.25;AN=8;AO=21;CIGAR=1X;DP=301;DPB=301;DPRA=0;EPP=48.6112;EPPR=611.023;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=725;QR=9597;RO=280;RPL=21;RPP=48.6112;RPPR=611.023;RPR=0;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=280;SRP=611.023;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:128:127,1:127:4323:1:34:0,-35.1329,-385.871 0/0:90:82,8:82:2817:8:273:0,-2.19009,-228.878 0/1:42:35,7:35:1210:7:245:-9.74797,0,-96.5619 0/1:41:36,5:36:1247:5:173:-3.56798,0,-100.193 dDocent_Contig_5642 1 . N G 95.3245 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=48.3333;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=104;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:104:-9.53191,-0.90309,0 dDocent_Contig_5643 187 . C G 53.8688 . AB=0.136364;ABP=53.5464;AC=2;AF=0.25;AN=8;AO=6;CIGAR=1X;DP=84;DPB=84;DPRA=1.1;EPP=16.0391;EPPR=172.385;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=226;QR=3042;RO=78;RPL=6;RPP=16.0391;RPPR=172.385;RPR=0;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=172.385;SRR=78;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:21,2:21:831:2:81:-0.762044,0,-68.1843 0/0:16:16,0:16:622:0:0:0,-4.81648,-56.3154 0/1:21:17,4:17:672:4:145:-7.07962,0,-54.492 0/0:24:24,0:24:917:0:0:0,-7.22472,-82.8319 dDocent_Contig_5644 209 . N G 208.958 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=6;CIGAR=1X;DP=6;DPB=6;DPRA=0;EPP=8.80089;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=0.166667;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=210;QR=0;RO=0;RPL=6;RPP=16.0391;RPPR=0;RPR=0;RUN=1;SAF=5;SAP=8.80089;SAR=1;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1:0,1:0:0:1:35:-3.49863,-0.30103,0 1/1:2:0,2:0:0:2:70:-6.6474,-0.60206,0 1/1:1:0,1:0:0:1:35:-3.49863,-0.30103,0 1/1:2:0,2:0:0:2:70:-6.6474,-0.60206,0 dDocent_Contig_5645 177 . A G 220.107 . AB=0.188406;ABP=61.1995;AC=2;AF=0.25;AN=8;AO=13;CIGAR=1X;DP=135;DPB=135;DPRA=1.04545;EPP=31.2394;EPPR=267.93;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=505;QR=4842;RO=122;RPL=13;RPP=31.2394;RPPR=267.93;RPR=0;RUN=1;SAF=0;SAP=31.2394;SAR=13;SRF=0;SRP=267.93;SRR=122;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:8,7:8:326:7:276:-20.6919,0,-25.1942 0/1:54:48,6:48:1906:6:229:-4.71655,0,-155.486 0/0:24:24,0:24:964:0:0:0,-7.22472,-87.0587 0/0:42:42,0:42:1646:0:0:0,-12.6433,-148.366 dDocent_Contig_5646 107 . N A 238.814 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=8;CIGAR=1X;DP=8;DPB=8;DPRA=0;EPP=20.3821;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=255;QR=0;RO=0;RPL=0;RPP=20.3821;RPPR=0;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:4:0,4:0:0:4:125:-11.5591,-1.20412,0 1/1:4:0,4:0:0:4:130:-12.0211,-1.20412,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_5647 27 . T C 4651.2 . AB=0.426396;ABP=21.5505;AC=4;AF=0.5;AN=8;AO=168;CIGAR=1X2M1X1M1D4M;DP=394;DPB=377.1;DPRA=0;EPP=367.818;EPPR=428.619;GTI=0;LEN=1;MEANALT=2.75;MQM=59.9345;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.994048;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6474;QR=7523;RO=196;RPL=0;RPP=367.818;RPPR=428.619;RPR=168;RUN=1;SAF=168;SAP=367.818;SAR=0;SRF=196;SRP=428.619;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:106:69,33,4:69:2679:33,4:1266,162:-83.1155,0,-210.163,-90.5259,-206.738,-309.438 0|1:86:42,33,6:42:1630:33,6:1252,239:-90.0048,0,-123.989,-82.9646,-114.241,-215.083 0|1:144:69,68,7:69:2581:68,7:2641,273:-196.22,0,-190.837,-194.555,-188.87,-403.762 0|1:58:16,34,7:16:633:34,7:1315,282:-103.178,0,-41.8563,-84.7488,-28.8465,-134.741 dDocent_Contig_5648 1 . N G 73.1023 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=77;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:77:-7.30914,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_5649 13 . C G 666.951 . AB=0.153061;ABP=310.384;AC=4;AF=0.5;AN=8;AO=45;CIGAR=1X;DP=294;DPB=294;DPRA=0;EPP=100.727;EPPR=543.707;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1790;QR=10042;RO=249;RPL=0;RPP=100.727;RPPR=543.707;RPR=45;RUN=1;SAF=45;SAP=100.727;SAR=0;SRF=249;SRP=543.707;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:132:118,14:118:4768:14:568:-11.7268,0,-389.27 0/1:111:92,19:92:3698:19:751:-34.4938,0,-299.411 0/1:32:22,10:22:885:10:389:-25.7267,0,-70.3244 0/1:19:17,2:17:691:2:82:-2.06011,0,-56.7991 dDocent_Contig_5650 13 . C T 18861.1 . AB=0.716507;ABP=343.391;AC=4;AF=0.5;AN=8;AO=599;CIGAR=1X1M1X;DP=836;DPB=836;DPRA=0;EPP=1303.72;EPPR=508.963;GTI=0;LEN=1;MEANALT=2;MQM=59.7513;MQMR=60;NS=4;NUMALT=1;ODDS=5.55112e-17;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=23850;QR=9201;RO=233;RPL=0;RPP=1303.72;RPPR=508.963;RPR=599;RUN=1;SAF=599;SAP=1303.72;SAR=0;SRF=233;SRP=508.963;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:259:98,160:98:3896:160:6353:-493.358,0,-272.62 0|1:291:81,208:81:3189:208:8269:-656.33,0,-199.788 0|1:178:22,156:22:867:156:6217:-505.471,0,-24.7576 0|1:108:32,75:32:1249:75:3011:-238.348,0,-80.1589 dDocent_Contig_5651 8 . C T 47.1884 . AB=0.214286;ABP=12.937;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=96;DPB=96;DPRA=0.512195;EPP=9.52472;EPPR=204.957;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.989247;PAO=0;PQA=0;PQR=0;PRO=0;QA=114;QR=3608;RO=93;RPL=0;RPP=9.52472;RPPR=204.957;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=93;SRP=204.957;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:37:37,0:37:1439:0:0:0,-11.1381,-129.785 0/0:26:26,0:26:1003:0:0:0,-7.82678,-90.581 0/1:14:11,3:11:429:3:114:-6.4178,0,-34.7512 0/0:19:19,0:19:737:0:0:0,-5.71957,-66.6612 dDocent_Contig_5652 1 . N A 343.381 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=13;CIGAR=1X;DP=13;DPB=13;DPRA=0;EPP=31.2394;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=29.3846;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=451;QR=0;RO=0;RPL=0;RPP=31.2394;RPPR=0;RPR=13;RUN=1;SAF=0;SAP=31.2394;SAR=13;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:5:0,5:0:0:5:174:-13.2275,-1.50515,0 1/1:4:0,4:0:0:4:138:-9.99863,-1.20412,0 ./.:.:.:.:.:.:.:. 1/1:4:0,4:0:0:4:139:-10.6346,-1.20412,0 dDocent_Contig_5653 1 . N G 75.8478 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=57;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=80;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:80:-7.5837,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_5654 8 . C A 90.1411 . AB=0.333333;ABP=5.9056;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=80;DPB=80;DPRA=0.529412;EPP=11.6962;EPPR=168.042;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=155;QR=2941;RO=76;RPL=0;RPP=11.6962;RPPR=168.042;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=76;SRP=168.042;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:36:36,0:36:1389:0:0:0,-10.8371,-125.291 0/0:10:10,0:10:386:0:0:0,-3.0103,-35.097 0/0:22:22,0:22:858:0:0:0,-6.62266,-77.5416 0/1:12:8,4:8:308:4:155:-10.7131,0,-24.4694 dDocent_Contig_5655 54 . C T 3602.64 . AB=0.403077;ABP=29.529;AC=4;AF=0.5;AN=8;AO=131;CIGAR=1X3M;DP=325;DPB=325;DPRA=0;EPP=278.854;EPPR=380.846;GTI=0;LEN=1;MEANALT=2.75;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.282443;PAIREDR=0.994253;PAO=0;PQA=0;PQR=0;PRO=0;QA=5111;QR=6810;RO=174;RPL=131;RPP=287.473;RPPR=380.846;RPR=0;RUN=1;SAF=130;SAP=278.854;SAR=1;SRF=174;SRP=380.846;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:110:67,4,39:67:2614:4,39:159,1482:-101.311,-108.388,-322.047,0,-201.759,-203.11 0|1:80:29,7,43:29:1149:7,43:266,1703:-131.434,-118.355,-210.819,0,-72.774,-81.6374 0|1:84:49,5,29:49:1908:5,29:189,1163:-81.0855,-80.3489,-235.637,0,-141.317,-148.077 0|1:51:29,1,20:29:1139:1,20:40,763:-53.8309,-59.2649,-152.649,0,-90.3774,-87.6521 dDocent_Contig_5656 9 . A C 588.735 . AB=0.152;ABP=265.984;AC=1;AF=0.125;AN=8;AO=44;CIGAR=1X2M1X;DP=736;DPB=736;DPRA=1.9595;EPP=98.5551;EPPR=1503.5;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.998553;PAO=0;PQA=0;PQR=0;PRO=0;QA=1742;QR=27078;RO=691;RPL=0;RPP=98.5551;RPPR=1503.5;RPR=44;RUN=1;SAF=44;SAP=98.5551;SAR=0;SRF=691;SRP=1503.5;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:250:212,38:212:8313:38:1503:-60.2714,0,-672.581 0|0:264:260,3:260:10186:3:120:0,-68.1654,-905.128 0|0:107:107,0:107:4205:0:0:0,-32.2102,-378.477 0|0:115:112,3:112:4374:3:119:0,-23.5231,-382.582 dDocent_Contig_5657 8 . C A 2805.59 . AB=0.688406;ABP=45.5586;AC=4;AF=0.5;AN=8;AO=95;CIGAR=1X;DP=138;DPB=138;DPRA=0;EPP=209.3;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3647;QR=1647;RO=43;RPL=0;RPP=209.3;RPPR=96.3836;RPR=95;RUN=1;SAF=95;SAP=209.3;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:40:22,18:22:846:18:693:-50.6631,0,-64.4211 0/1:45:7,38:7:267:38:1459:-118.042,0,-10.8461 0/1:25:8,17:8:302:17:647:-51.0383,0,-20.0116 0/1:28:6,22:6:232:22:848:-68.2142,0,-12.8202 dDocent_Contig_5658 15 . A G 996.722 . AB=0.222749;ABP=143.888;AC=4;AF=0.5;AN=8;AO=47;CIGAR=1X;DP=211;DPB=211;DPRA=0;EPP=105.07;EPPR=359.132;GTI=0;LEN=1;MEANALT=1;MQM=59.2128;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.234043;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1884;QR=6470;RO=164;RPL=0;RPP=105.07;RPPR=359.132;RPR=47;RUN=1;SAF=47;SAP=105.07;SAR=0;SRF=164;SRP=359.132;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:80:64,16:64:2518:16:636:-33.1147,0,-202.684 0/1:70:56,14:56:2208:14:570:-30.5701,0,-177.829 0/1:44:33,11:33:1309:11:437:-26.4376,0,-104.824 0/1:17:11,6:11:435:6:241:-16.9477,0,-34.3846 dDocent_Contig_5659 17 . A G 2874.4 . AB=0.0408163;ABP=361.968;AC=0;AF=0;AN=8;AO=8;CIGAR=1X3M2I3M;DP=341;DPB=377.857;DPRA=0;EPP=20.3821;EPPR=450.334;GTI=0;LEN=1;MEANALT=3.5;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=305;QR=7989;RO=206;RPL=0;RPP=20.3821;RPPR=450.334;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=206;SRP=450.334;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:155:89,4,60,0:89:3461:4,60,0:156,2309,0:-162.799,-176.767,-459.968,0,-271.624,-266.386,-189.591,-461.172,-284.448,-473.996 0|0:113:66,0,39,0:66:2546:0,39,0:0,1469,0:-100.484,-120.352,-329.418,0,-209.073,-197.333,-120.352,-329.418,-209.073,-329.418 0|0:41:28,4,8,1:28:1083:4,8,1:149,303,41:-16.4102,-12.6449,-100.395,0,-76.7613,-86.5484,-21.4524,-98.2145,-85.5718,-110.109 0|0:32:23,0,7,2:23:899:0,7,2:0,269,80:-15.1451,-22.0688,-95.9799,0,-73.9005,-71.7933,-15.4754,-89.3893,-67.3098,-88.7872 dDocent_Contig_5660 23 . G A 91.6597 . AB=0.166667;ABP=37.7539;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=88;DPB=88;DPRA=3.88889;EPP=18.2106;EPPR=178.9;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.901235;PAO=0;PQA=0;PQR=0;PRO=0;QA=275;QR=3196;RO=81;RPL=0;RPP=18.2106;RPPR=178.9;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=81;SRP=178.9;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:34:33,1:33:1311:1:38:0,-6.43775,-114.46 0/1:36:30,6:30:1181:6:237:-10.8649,0,-95.7321 0/0:10:10,0:10:395:0:0:0,-3.0103,-35.9052 0/0:8:8,0:8:309:0:0:0,-2.40824,-28.1669 dDocent_Contig_5661 31 . T G 2353.65 . AB=0.116477;ABP=452.727;AC=1;AF=0.125;AN=8;AO=41;CIGAR=1M1X2M;DP=352;DPB=329;DPRA=0;EPP=92.0407;EPPR=463.362;GTI=0;LEN=1;MEANALT=2.75;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=5.55112e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1642;QR=8359;RO=212;RPL=0;RPP=92.0407;RPPR=463.362;RPR=41;RUN=1;SAF=41;SAP=92.0407;SAR=0;SRF=212;SRP=463.362;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:86:22,48,13:22:856:48,13:1913,516:-150.903,0,-55.8879,-115.053,-27.8623,-181.479 0|0:105:80,16,9:80:3179:16,9:626,367:-27.3753,0,-256.898,-21.173,-231.435,-280.192 0|1:99:65,15,17:65:2583:15,17:588,685:-36.8978,-8.11982,-216.252,0,-164.307,-207.538 0|0:62:45,13,2:45:1741:13,2:501,74:-27.5866,0,-139.088,-35.0818,-136.949,-177.475 dDocent_Contig_5662 9 . A T 1276.36 . AB=0.392;ABP=15.6743;AC=3;AF=0.375;AN=8;AO=49;CIGAR=1X;DP=165;DPB=165;DPRA=1.04167;EPP=109.412;EPPR=254.901;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1885;QR=4428;RO=116;RPL=0;RPP=109.412;RPPR=254.901;RPR=49;RUN=1;SAF=49;SAP=109.412;SAR=0;SRF=116;SRP=254.901;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:40:40,0:40:1539:0:0:0,-12.0412,-138.779 0/1:51:29,22:29:1087:22:843:-60.8402,0,-82.7787 0/1:48:26,22:26:1001:22:851:-62.462,0,-75.9508 0/1:26:21,5:21:801:5:191:-9.73188,0,-64.5883 dDocent_Contig_5663 17 . A T 1040.2 . AB=0.156425;ABP=553.606;AC=3;AF=0.375;AN=8;AO=87;CIGAR=1X;DP=605;DPB=605;DPRA=0;EPP=191.928;EPPR=1127.83;GTI=0;LEN=1;MEANALT=1;MQM=38.4598;MQMR=15.4479;NS=4;NUMALT=1;ODDS=2.77556e-17;PAIRED=0.954023;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=3524;QR=20872;RO=518;RPL=0;RPP=191.928;RPPR=1127.83;RPR=87;RUN=1;SAF=87;SAP=191.928;SAR=0;SRF=518;SRP=1127.83;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:222:196,26:196:7890:26:1057:-20.7858,0,-198.585 0/1:205:160,45:160:6451:45:1822:-77.7599,0,-114.436 0/1:110:97,13:97:3904:13:528:-10.8718,0,-95.7516 0/0:68:65,3:65:2627:3:117:0,-10.322,-94.4206 dDocent_Contig_5664 107 . N T 2404.71 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=77;CIGAR=1X;DP=77;DPB=77;DPRA=0;EPP=170.214;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=59.9481;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=0.25974;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=2650;QR=0;RO=0;RPL=0;RPP=170.214;RPPR=0;RPR=77;RUN=1;SAF=0;SAP=170.214;SAR=77;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:32:0,32:0:0:32:1122:-101.288,-9.63296,0 1/1:12:0,12:0:0:12:405:-36.7732,-3.61236,0 1/1:19:0,19:0:0:19:640:-57.9139,-5.71957,0 1/1:14:0,14:0:0:14:483:-43.797,-4.21442,0 dDocent_Contig_5665 98 . N A 231.8 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=7;CIGAR=3X;DP=7;DPB=7;DPRA=0;EPP=18.2106;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=236;QR=0;RO=0;RPL=7;RPP=18.2106;RPPR=0;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:1:0,1:0:0:1:33:-3.29913,-0.30103,0 1|1:1:0,1:0:0:1:34:-3.39891,-0.30103,0 1|1:3:0,3:0:0:3:103:-9.61002,-0.90309,0 1|1:2:0,2:0:0:2:66:-6.26831,-0.60206,0 dDocent_Contig_5666 9 . A G 3923.05 . AB=0.644231;ABP=40.5935;AC=4;AF=0.5;AN=8;AO=134;CIGAR=1X;DP=208;DPB=208;DPRA=0;EPP=268.513;EPPR=163.699;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=0.820896;PAIREDR=0.945946;PAO=0;PQA=0;PQR=0;PRO=0;QA=5124;QR=2805;RO=74;RPL=0;RPP=293.988;RPPR=163.699;RPR=134;RUN=1;SAF=131;SAP=268.513;SAR=3;SRF=74;SRP=163.699;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:48:19,29:19:723:29:1103:-85.1228,0,-50.9507 0/1:69:22,47:22:841:47:1811:-142.47,0,-55.241 0/1:44:20,24:20:738:24:918:-69.6918,0,-53.4983 0/1:47:13,34:13:503:34:1292:-102.418,0,-31.4703 dDocent_Contig_5667 87 . A T 1010.53 . AB=0.224806;ABP=172.722;AC=3;AF=0.375;AN=8;AO=62;CIGAR=1X;DP=351;DPB=351;DPRA=0;EPP=137.642;EPPR=630.566;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2181;QR=10196;RO=289;RPL=62;RPP=137.642;RPPR=630.566;RPR=0;RUN=1;SAF=62;SAP=137.642;SAR=0;SRF=289;SRP=630.566;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:93:89,4:89:3167:4:146:0,-14.498,-271.759 0/1:84:55,29:55:1943:29:1024:-67.1835,0,-149.859 0/1:107:91,16:91:3189:16:561:-18.6078,0,-255.023 0/1:67:54,13:54:1897:13:450:-20.6594,0,-150.837 dDocent_Contig_5668 22 . C G 219.237 . AB=0.122995;ABP=233.871;AC=2;AF=0.25;AN=8;AO=23;CIGAR=1X;DP=231;DPB=231;DPRA=4.25;EPP=52.9542;EPPR=454.677;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=899;QR=8267;RO=208;RPL=0;RPP=52.9542;RPPR=454.677;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=208;SRP=454.677;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:109:96,13:96:3798:13:511:-13.5265,0,-309.026 0/1:78:68,10:68:2704:10:388:-11.7952,0,-220.009 0/0:31:31,0:31:1252:0:0:0,-9.33193,-112.945 0/0:13:13,0:13:513:0:0:0,-3.91339,-46.514 dDocent_Contig_5669 9 . A T 2111.35 . AB=0.438202;ABP=8.91475;AC=3;AF=0.375;AN=8;AO=81;CIGAR=1X;DP=228;DPB=228;DPRA=0;EPP=178.9;EPPR=322.217;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3104;QR=5629;RO=147;RPL=0;RPP=178.9;RPPR=322.217;RPR=81;RUN=1;SAF=81;SAP=178.9;SAR=0;SRF=147;SRP=322.217;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:50:47,3:47:1806:3:113:0,-4.51253,-152.253 0/1:37:27,10:27:1024:10:375:-22.9593,0,-81.3309 0/1:41:30,11:30:1155:11:425:-26.2621,0,-91.9083 0/1:100:43,57:43:1644:57:2191:-167.312,0,-118.123 dDocent_Contig_5670 46 . G A 934.532 . AB=0.214612;ABP=157.938;AC=4;AF=0.5;AN=8;AO=47;CIGAR=1X;DP=219;DPB=219;DPRA=0;EPP=105.07;EPPR=367.868;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.9767;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1837;QR=6761;RO=172;RPL=0;RPP=105.07;RPPR=367.868;RPR=47;RUN=1;SAF=47;SAP=105.07;SAR=0;SRF=172;SRP=376.504;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:50:33,17:33:1305:17:659:-44.5836,0,-102.667 0/1:75:59,16:59:2326:16:628:-34.2767,0,-186.922 0/1:52:47,5:47:1831:5:195:-2.26888,0,-149.353 0/1:42:33,9:33:1299:9:355:-19.6671,0,-104.534 dDocent_Contig_5671 17 . T G 9931.26 . AB=0.714286;ABP=181.691;AC=4;AF=0.5;AN=8;AO=320;CIGAR=1X;DP=448;DPB=448;DPRA=0;EPP=697.881;EPPR=278.787;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.99375;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=12613;QR=5050;RO=127;RPL=0;RPP=697.881;RPPR=278.787;RPR=320;RUN=1;SAF=320;SAP=697.881;SAR=0;SRF=127;SRP=278.787;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:195:57,138:57:2241:138:5435:-430.291,0,-143.153 0/1:132:39,93:39:1565:93:3668:-290.407,0,-101.347 0/1:64:13,50:13:509:50:1981:-159.131,0,-26.807 0/1:57:18,39:18:735:39:1529:-120.695,0,-49.3139 dDocent_Contig_5675 16 . T C 92.2275 . AB=0.363636;ABP=4.78696;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=99;DPB=99;DPRA=0.375;EPP=3.0103;EPPR=209.3;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.884211;PAO=0;PQA=0;PQR=0;PRO=0;QA=154;QR=3690;RO=95;RPL=0;RPP=11.6962;RPPR=209.3;RPR=4;RUN=1;SAF=2;SAP=3.0103;SAR=2;SRF=95;SRP=209.3;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:35:35,0:35:1356:0:0:0,-10.536,-122.31 0/0:35:35,0:35:1372:0:0:0,-10.536,-123.749 0/1:11:7,4:7:261:4:154:-10.9217,0,-20.5322 0/0:18:18,0:18:701:0:0:0,-5.41854,-63.4144 dDocent_Contig_5676 18 . T C 2800.24 . AB=0.290076;ABP=153.439;AC=4;AF=0.5;AN=8;AO=114;CIGAR=1X;DP=393;DPB=393;DPRA=0;EPP=250.558;EPPR=608.851;GTI=0;LEN=1;MEANALT=1;MQM=59.3684;MQMR=59.828;NS=4;NUMALT=1;ODDS=0;PAIRED=0.964912;PAIREDR=0.989247;PAO=0;PQA=0;PQR=0;PRO=0;QA=4498;QR=11169;RO=279;RPL=0;RPP=250.558;RPPR=608.851;RPR=114;RUN=1;SAF=114;SAP=250.558;SAR=0;SRF=279;SRP=608.851;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:114:90,24:90:3598:24:930:-49.6126,0,-289.218 0/1:89:63,26:63:2542:26:1026:-65.6973,0,-202.027 0/1:108:70,38:70:2779:38:1510:-103.633,0,-217.709 0/1:82:56,26:56:2250:26:1032:-68.4789,0,-177.977 dDocent_Contig_5677 8 . C G 70.3791 . AB=0.166667;ABP=31.9633;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=90;DPB=90;DPRA=2.75;EPP=16.0391;EPPR=152.325;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.809524;PAO=0;PQA=0;PQR=0;PRO=0;QA=229;QR=3188;RO=84;RPL=0;RPP=16.0391;RPPR=185.414;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=80;SRP=152.325;SRR=4;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:25,5:25:931:5:190:-8.43584,0,-75.0706 0/0:36:35,1:35:1337:1:39:0,-6.94052,-116.718 0/0:15:15,0:15:575:0:0:0,-4.51545,-52.0909 0/0:9:9,0:9:345:0:0:0,-2.70927,-31.4082 dDocent_Contig_5678 47 . A G 252.359 . AB=0.3125;ABP=12.7819;AC=1;AF=0.125;AN=8;AO=11;CIGAR=1X;DP=112;DPB=112;DPRA=0.836066;EPP=26.8965;EPPR=222.329;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=439;QR=4047;RO=101;RPL=0;RPP=26.8965;RPPR=222.329;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=101;SRP=222.329;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:32:22,10:22:884:10:399:-26.6338,0,-70.2342 0/0:19:18,1:18:728:1:40:0,-1.72389,-61.8492 0/0:30:30,0:30:1207:0:0:0,-9.0309,-108.904 0/0:31:31,0:31:1228:0:0:0,-9.33193,-110.793 dDocent_Contig_5679 31 . T C 351.95 . AB=0.223684;ABP=53.4113;AC=2;AF=0.25;AN=8;AO=17;CIGAR=1X;DP=127;DPB=127;DPRA=1.4902;EPP=39.9253;EPPR=241.872;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=675;QR=4300;RO=110;RPL=0;RPP=39.9253;RPPR=241.872;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=110;SRP=241.872;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:25:25,0:25:981:0:0:0,-7.52575,-88.5976 0/0:26:26,0:26:1016:0:0:0,-7.82678,-91.7416 0/1:44:34,10:34:1348:10:404:-23.4747,0,-108.341 0/1:32:25,7:25:955:7:271:-15.1183,0,-76.6099 dDocent_Contig_5680 32 . G A 1922.09 . AB=0.30315;ABP=88.5013;AC=1;AF=0.125;AN=8;AO=80;CIGAR=1X;DP=1039;DPB=1039;DPRA=0;EPP=176.728;EPPR=2085.45;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.0125;PAIREDR=0.706986;PAO=0;PQA=0;PQR=0;PRO=0;QA=3124;QR=38206;RO=959;RPL=0;RPP=176.728;RPPR=2085.45;RPR=80;RUN=1;SAF=80;SAP=176.728;SAR=0;SRF=959;SRP=2085.45;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:300:299,1:299:11888:1:41:0,-86.2144,-1064.97 0/0:262:261,1:261:10351:1:40:0,-74.8742,-926.89 0/0:223:222,1:222:8821:1:40:0,-63.134,-789.361 0/1:254:177,77:177:7146:77:3003:-193.908,0,-566.311 dDocent_Contig_5681 16 . T C 14093.4 . AB=0.41201;ABP=83.6409;AC=4;AF=0.5;AN=8;AO=494;CIGAR=1X;DP=1199;DPB=1199;DPRA=0;EPP=1075.72;EPPR=1533.9;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.993927;PAIREDR=0.998582;PAO=0;PQA=0;PQR=0;PRO=0;QA=19757;QR=27993;RO=705;RPL=0;RPP=1075.72;RPPR=1533.9;RPR=494;RUN=1;SAF=494;SAP=1075.72;SAR=0;SRF=705;SRP=1533.9;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:356:203,153:203:8108:153:6093:-440.978,0,-622.1 0/1:285:173,112:173:6858:112:4467:-316.174,0,-531.127 0/1:310:183,127:183:7205:127:5106:-366.082,0,-554.786 0/1:248:146,102:146:5822:102:4091:-293.5,0,-449.127 dDocent_Contig_5682 51 . C T 1674.07 . AB=0.159664;ABP=122.733;AC=2;AF=0.25;AN=8;AO=19;CIGAR=1M7I2M1X2M;DP=131;DPB=225.5;DPRA=0;EPP=44.2683;EPPR=111.584;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=743;QR=1980;RO=50;RPL=19;RPP=44.2683;RPPR=111.584;RPR=0;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:41:11,11,19:11:437:11,19:438,681:-52.2731,-19.503,-52.1838,-0.0898563,0,-30.3478 0|0:59:17,4,38:17:677:4,38:148,1400:-109.339,-102.352,-156.903,0,-43.6706,-44.3301 0|0:12:10,0,2:10:392:0,2:0,78:-3.79094,-6.80124,-39.0386,0,-32.6273,-32.0252 0|1:19:12,4,3:12:474:4,3:157,107:-9.3203,0,-37.8306,-4.22771,-30.3221,-42.3307 dDocent_Contig_5683 32 . C T 392.329 . AB=0.2;ABP=77.2747;AC=1;AF=0.125;AN=8;AO=19;CIGAR=1X;DP=298;DPB=298;DPRA=1.40394;EPP=44.2683;EPPR=608.851;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=769;QR=11143;RO=279;RPL=0;RPP=44.2683;RPPR=608.851;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=279;SRP=608.851;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:123:123,0:123:4968:0:0:0,-37.0267,-446.984 0/1:95:76,19:76:3015:19:769:-40.9318,0,-242.833 0/0:43:43,0:43:1732:0:0:0,-12.9443,-156.095 0/0:37:37,0:37:1428:0:0:0,-11.1381,-128.753 dDocent_Contig_5684 48 . G A 297.56 . AB=0.208333;ABP=56.2114;AC=2;AF=0.25;AN=8;AO=17;CIGAR=1X;DP=173;DPB=173;DPRA=0.734568;EPP=39.9253;EPPR=307.907;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.980769;PAO=0;PQA=0;PQR=0;PRO=0;QA=680;QR=6166;RO=156;RPL=0;RPP=39.9253;RPPR=307.907;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=156;SRP=341.76;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:54:54,0:54:2135:0:0:0,-16.2556,-192.341 0/0:47:45,2:45:1792:2:79:0,-6.65117,-154.001 0/1:47:41,6:41:1611:6:238:-7.64544,0,-131.082 0/1:25:16,9:16:628:9:363:-25.5085,0,-49.3297 dDocent_Contig_5685 43 . A C 808.949 . AB=0.0240964;ABP=166.289;AC=0;AF=0;AN=8;AO=6;CIGAR=2X1M2X2M1X;DP=303;DPB=303;DPRA=0.935065;EPP=16.0391;EPPR=554.564;GTI=0;LEN=1;MEANALT=2.5;MQM=41.6667;MQMR=60;NS=4;NUMALT=2;ODDS=1.38778e-17;PAIRED=0.666667;PAIREDR=0.980315;PAO=0;PQA=0;PQR=0;PRO=0;QA=231;QR=9551;RO=254;RPL=4;RPP=4.45795;RPPR=554.564;RPR=2;RUN=1;SAF=4;SAP=4.45795;SAR=2;SRF=254;SRP=554.564;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:77:77,0,0:77:2868:0,0:0,0:0,-23.1793,-258.303,-23.1793,-258.303,-258.303 0|0:83:71,2,9:71:2663:2,9:72,351:-7.5843,-26.729,-244.241,0,-215.996,-215.548 0|0:82:53,0,28:53:2017:0,28:0,1124:-76.7085,-92.6631,-258.085,0,-165.464,-157.035 0|0:61:53,4,4:53:2003:4,4:159,158:0,-2.90227,-165.864,-2.95403,-154.066,-165.915 dDocent_Contig_5686 39 . T A 85.244 . AB=0.106061;ABP=180.939;AC=1;AF=0.125;AN=8;AO=14;CIGAR=1X;DP=299;DPB=299;DPRA=2.37126;EPP=33.4109;EPPR=621.88;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=548;QR=11137;RO=285;RPL=0;RPP=33.4109;RPPR=621.88;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=285;SRP=621.88;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:132:118,14:118:4608:14:548:-9.92234,0,-374.935 0/0:70:70,0:70:2713:0:0:0,-21.0721,-244.315 0/0:56:56,0:56:2211:0:0:0,-16.8577,-199.174 0/0:41:41,0:41:1605:0:0:0,-12.3422,-144.688 dDocent_Contig_5687 24 . T A 2548.19 . AB=0.23908;ABP=260.237;AC=4;AF=0.5;AN=8;AO=104;CIGAR=1X2M1X;DP=435;DPB=435;DPRA=0;EPP=228.843;EPPR=591.479;GTI=0;LEN=1;MEANALT=1.75;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4168;QR=10732;RO=271;RPL=0;RPP=228.843;RPPR=591.479;RPR=104;RUN=1;SAF=104;SAP=228.843;SAR=0;SRF=271;SRP=591.479;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:163:104,36,23:104:4102:36,23:1440,886:-87.3174,0,-326.648,-45.9055,-264.762,-376.455 0|1:138:75,35,28:75:2993:35,28:1400,1128:-92.7445,0,-235.953,-22.3502,-153.518,-260.413 0|1:72:50,13,9:50:1978:13,9:526,362:-28.3197,0,-158.859,-13.5387,-132.938,-173.6 0|1:62:42,20,0:42:1659:20,0:802,0:-53.8355,0,-130.878,-66.4788,-136.898,-202.978 dDocent_Contig_5688 140 . G A 70.171 . AB=0.137931;ABP=69.053;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=184;DPB=184;DPRA=1.38095;EPP=20.3821;EPPR=385.189;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=287;QR=6566;RO=176;RPL=0;RPP=20.3821;RPPR=385.189;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=385.189;SRR=176;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:18:18,0:18:674:0:0:0,-5.41854,-60.9883 0/0:30:30,0:30:1090:0:0:0,-9.0309,-98.3915 0/0:78:78,0:78:2930:0:0:0,-23.4803,-263.871 0/1:58:50,8:50:1872:8:287:-8.71607,0,-151.257 dDocent_Contig_5689 8 . C T 261.101 . AB=0.272727;ABP=22.751;AC=1;AF=0.125;AN=8;AO=12;CIGAR=1X;DP=86;DPB=86;DPRA=3.14286;EPP=29.068;EPPR=163.699;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=449;QR=2864;RO=74;RPL=0;RPP=29.068;RPPR=163.699;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=74;SRP=163.699;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:44:32,12:32:1240:12:449:-27.508,0,-98.6477 0/0:21:21,0:21:807:0:0:0,-6.32163,-72.955 0/0:13:13,0:13:505:0:0:0,-3.91339,-45.7991 0/0:8:8,0:8:312:0:0:0,-2.40824,-28.4449 dDocent_Contig_5690 90 . T C 308.102 . AB=0.464286;ABP=3.32051;AC=2;AF=0.25;AN=8;AO=13;CIGAR=1X;DP=61;DPB=61;DPRA=0.848485;EPP=31.2394;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=466;QR=1706;RO=48;RPL=13;RPP=31.2394;RPPR=107.241;RPR=0;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:19:19,0:19:656:0:0:0,-5.71957,-59.3624 0/0:14:14,0:14:508:0:0:0,-4.21442,-46.058 0/1:11:5,6:5:185:6:215:-16.3878,0,-13.6987 0/1:17:10,7:10:357:7:251:-17.8203,0,-27.3545 dDocent_Contig_5691 114 . A T 187.593 . AB=0.346154;ABP=8.35546;AC=1;AF=0.125;AN=8;AO=12;CIGAR=1X;DP=80;DPB=80;DPRA=1.71795;EPP=29.068;EPPR=148.499;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=404;QR=2258;RO=67;RPL=0;RPP=29.068;RPPR=148.499;RPR=12;RUN=1;SAF=0;SAP=29.068;SAR=12;SRF=0;SRP=148.499;SRR=67;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:16,9:16:540:9:305:-20.1572,0,-41.3081 0/0:16:15,1:15:498:1:35:0,-1.31785,-41.6379 0/0:25:23,2:23:768:2:64:0,-1.44738,-63.3525 0/0:13:13,0:13:452:0:0:0,-3.91339,-41.0123 dDocent_Contig_5692 9 . A C 4660.28 . AB=0.0316206;ABP=967.196;AC=0;AF=0;AN=8;AO=16;CIGAR=1X2M1X1M;DP=506;DPB=506;DPRA=0;EPP=37.7539;EPPR=619.708;GTI=0;LEN=1;MEANALT=3.75;MQM=60;MQMR=59.8099;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=0.992958;PAO=0;PQA=0;PQR=0;PRO=0;QA=616;QR=11089;RO=284;RPL=0;RPP=37.7539;RPPR=619.708;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=284;SRP=619.708;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:130:79,11,6,33:79:3104:11,6,33:428,244,1304:-81.917,-70.5243,-321.128,-85.5692,-304.312,-337.679,0,-218.748,-233.793,-243.987 0|0:206:100,2,11,93:100:3892:2,11,93:78,421,3591:-247.919,-271.61,-590.86,-243.484,-556.925,-560.026,0,-313.435,-285.311,-291.851 0|0:98:60,2,0,32:60:2343:2,0,32:72,0,1244:-81.3253,-93.5147,-285.53,-99.3871,-286.132,-292.005,0,-186.755,-192.627,-182.995 0|0:72:45,1,1,24:45:1750:1,1,24:38,40,956:-62.2647,-72.6948,-216.201,-72.5155,-213.207,-216.022,0,-140.685,-140.506,-136.576 dDocent_Contig_5693 39 . C A 107.403 . AB=0.125;ABP=100.727;AC=1;AF=0.125;AN=8;AO=17;CIGAR=1X;DP=353;DPB=353;DPRA=0.495305;EPP=39.9253;EPPR=730.454;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=684;QR=13265;RO=335;RPL=0;RPP=39.9253;RPPR=730.454;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=335;SRP=730.454;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:142:142,0:142:5614:0:0:0,-42.7463,-505.092 0/1:80:69,10:69:2716:10:403:-12.4393,0,-220.366 0/0:62:60,2:60:2385:2:78:0,-11.2606,-207.393 0/0:69:64,5:64:2550:5:203:0,-2.11801,-210.986 dDocent_Contig_5694 19 . A C 223.292 . AB=0.114035;ABP=298.026;AC=2;AF=0.25;AN=8;AO=34;CIGAR=1X;DP=524;DPB=524;DPRA=0.725253;EPP=76.8404;EPPR=1067.03;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1359;QR=19389;RO=490;RPL=0;RPP=76.8404;RPPR=1067.03;RPR=34;RUN=1;SAF=34;SAP=76.8404;SAR=0;SRF=490;SRP=1067.03;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:165:165,0:165:6583:0:0:0,-49.6699,-592.189 0/1:136:118,18:118:4628:18:718:-24.0028,0,-375.504 0/0:131:123,8:123:4900:8:322:0,-10.0866,-411.547 0/1:92:84,8:84:3278:8:319:-1.38157,0,-267.388 dDocent_Contig_5695 49 . T C 15478.2 . AB=0.674324;ABP=198.337;AC=4;AF=0.5;AN=8;AO=499;CIGAR=2X;DP=740;DPB=740;DPRA=0;EPP=1069.27;EPPR=508.963;GTI=0;LEN=1;MEANALT=1.75;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.991416;PAO=0;PQA=0;PQR=0;PRO=0;QA=19741;QR=9267;RO=233;RPL=497;RPP=1069.27;RPPR=508.963;RPR=2;RUN=1;SAF=499;SAP=1086.58;SAR=0;SRF=233;SRP=508.963;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:264:111,147:111:4423:147:5838:-447.154,0,-319.961 0|1:179:35,144:35:1382:144:5689:-457.936,0,-70.7549 0|1:150:52,98:52:2083:98:3844:-300.803,0,-142.499 0|1:147:35,110:35:1379:110:4370:-349.326,0,-80.429 dDocent_Contig_5696 83 . G A 94.8651 . AB=0.3125;ABP=7.89611;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=95;DPB=95;DPRA=1.02128;EPP=18.2106;EPPR=194.1;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=238;QR=3095;RO=88;RPL=7;RPP=18.2106;RPPR=194.1;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=88;SRP=194.1;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:8:8,0:8:279:0:0:0,-2.40824,-25.449 0/0:39:39,0:39:1392:0:0:0,-11.7402,-125.58 0/0:32:30,2:30:1042:2:64:0,-3.55459,-88.0132 0/1:16:11,5:11:382:5:174:-11.1855,0,-29.8979 dDocent_Contig_5697 21 . C A 496.013 . AB=0.129683;ABP=416.335;AC=3;AF=0.375;AN=8;AO=49;CIGAR=1X;DP=485;DPB=485;DPRA=0;EPP=109.412;EPPR=947.601;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1920;QR=17473;RO=435;RPL=0;RPP=109.412;RPPR=947.601;RPR=49;RUN=1;SAF=49;SAP=109.412;SAR=0;SRF=435;SRP=947.601;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:205:176,28:176:7082:28:1081:-35.8143,0,-575.258 0/0:138:134,4:134:5342:4:159:0,-26.8507,-465.916 0/1:95:86,9:86:3464:9:361:-4.25516,0,-283.184 0/1:47:39,8:39:1585:8:319:-14.9292,0,-128.728 dDocent_Contig_5698 16 . T C 1810.32 . AB=0.0575296;ABP=1008.02;AC=1;AF=0.125;AN=8;AO=34;CIGAR=3M1X;DP=855;DPB=914;DPRA=0;EPP=76.8404;EPPR=1527.38;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1354;QR=28000;RO=702;RPL=0;RPP=76.8404;RPPR=1527.38;RPR=34;RUN=1;SAF=34;SAP=76.8404;SAR=0;SRF=702;SRP=1527.38;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:237:194,19,24:194:7742:19,24:748,952:-19.9617,-16.8339,-648.72,0,-576.08,-630.384 0|0:264:231,33,0:231:9213:33,0:1278,0:-35.8144,0,-749.175,-105.352,-759.109,-864.073 0|0:205:152,45,7:152:6061:45,7:1781,279:-100.828,0,-485.608,-123.609,-476.18,-620.636 0|0:149:125,21,3:125:4984:21,3:843,123:-31.8262,0,-404.094,-59.3016,-400.263,-468.823 dDocent_Contig_5699 14 . A C 1317.74 . AB=0.203704;ABP=250.076;AC=4;AF=0.5;AN=8;AO=66;CIGAR=1X;DP=324;DPB=324;DPRA=0;EPP=146.327;EPPR=563.25;GTI=0;LEN=1;MEANALT=1;MQM=50.5303;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.984848;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2654;QR=10005;RO=258;RPL=0;RPP=146.327;RPPR=563.25;RPR=66;RUN=1;SAF=66;SAP=146.327;SAR=0;SRF=258;SRP=563.25;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:121:94,27:94:3669:27:1078:-60.15,0,-293.826 0/1:125:103,22:103:4056:22:888:-41.9437,0,-327.422 0/1:53:42,11:42:1549:11:442:-22.2816,0,-123.69 0/1:25:19,6:19:731:6:246:-14.7966,0,-58.5858 dDocent_Contig_5700 53 . A G 130.64 . AB=0.2;ABP=30.3709;AC=1;AF=0.125;AN=8;AO=12;CIGAR=1X;DP=288;DPB=288;DPRA=0.932886;EPP=29.068;EPPR=602.337;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.996377;PAO=0;PQA=0;PQR=0;PRO=0;QA=472;QR=10904;RO=276;RPL=12;RPP=29.068;RPPR=602.337;RPR=0;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=276;SRP=602.337;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:102:102,0:102:4040:0:0:0,-30.7051,-363.578 0/0:104:99,5:99:3886:5:195:0,-13.3833,-331.815 0/1:35:28,7:28:1107:7:277:-14.763,0,-89.379 0/0:47:47,0:47:1871:0:0:0,-14.1484,-168.595 dDocent_Contig_5701 29 . T G 139.964 . AB=0.181818;ABP=41.702;AC=1;AF=0.125;AN=8;AO=12;CIGAR=1X;DP=276;DPB=276;DPRA=0.633136;EPP=29.068;EPPR=576.279;GTI=0;LEN=1;MEANALT=1;MQM=56;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=469;QR=10560;RO=264;RPL=0;RPP=29.068;RPPR=576.279;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=264;SRP=576.279;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:90:90,0:90:3584:0:0:0,-27.0927,-322.587 0/0:79:79,0:79:3197:0:0:0,-23.7814,-287.777 0/0:63:59,4:59:2329:4:151:0,-5.03317,-195.839 0/1:44:36,8:36:1450:8:318:-15.6954,0,-117.502 dDocent_Contig_5702 46 . T C 160.735 . AB=0.176471;ABP=49.3776;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X;DP=151;DPB=151;DPRA=1.53;EPP=22.5536;EPPR=311.359;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=364;QR=5501;RO=142;RPL=0;RPP=22.5536;RPPR=311.359;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=142;SRP=311.359;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:68:68,0:68:2637:0:0:0,-20.47,-237.473 0/1:51:42,9:42:1602:9:364:-17.7724,0,-129.071 0/0:15:15,0:15:594:0:0:0,-4.51545,-53.7984 0/0:17:17,0:17:668:0:0:0,-5.11751,-60.4524 dDocent_Contig_5703 10 . C T 702.232 . AB=0.108744;ABP=1189.05;AC=3;AF=0.375;AN=8;AO=100;CIGAR=1X;DP=1042;DPB=1042;DPRA=0;EPP=220.158;EPPR=2022.56;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.7972;NS=4;NUMALT=1;ODDS=0;PAIRED=0.1;PAIREDR=0.348195;PAO=0;PQA=0;PQR=0;PRO=0;QA=3938;QR=37872;RO=942;RPL=0;RPP=220.158;RPPR=2048.54;RPR=100;RUN=1;SAF=100;SAP=220.158;SAR=0;SRF=939;SRP=2022.56;SRR=3;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:342:302,40:302:12180:40:1582:-39.6576,0,-987.176 0/1:336:299,37:299:12008:37:1446:-29.235,0,-977.159 0/1:214:194,20:194:7759:20:787:-6.72852,0,-633.465 0/0:150:147,3:147:5925:3:123:0,-33.6897,-521.546 dDocent_Contig_5704 25 . T C 830.114 . AB=0.1893;ABP=206.762;AC=4;AF=0.5;AN=8;AO=46;CIGAR=1X;DP=243;DPB=243;DPRA=0;EPP=102.898;EPPR=428.619;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.978261;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1800;QR=7439;RO=196;RPL=0;RPP=102.898;RPPR=428.619;RPR=46;RUN=1;SAF=46;SAP=102.898;SAR=0;SRF=196;SRP=428.619;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:91:66,25:66:2499:25:972:-60.3816,0,-197.7 0/1:69:60,8:60:2253:8:314:-8.01975,0,-182.405 0/1:60:52,8:52:1990:8:324:-11.4676,0,-161.266 0/1:23:18,5:18:697:5:190:-10.5403,0,-56.1367 dDocent_Contig_5705 18 . G A 1812.6 . AB=0.290441;ABP=106.762;AC=4;AF=0.5;AN=8;AO=79;CIGAR=1X;DP=272;DPB=272;DPRA=0;EPP=174.557;EPPR=422.104;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.886076;PAIREDR=0.994819;PAO=0;PQA=0;PQR=0;PRO=0;QA=2992;QR=7645;RO=193;RPL=0;RPP=174.557;RPPR=422.104;RPR=79;RUN=1;SAF=79;SAP=174.557;SAR=0;SRF=193;SRP=422.104;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:50:41,9:41:1615:9:326:-14.6255,0,-130.53 0/1:61:44,17:44:1752:17:633:-38.9301,0,-139.538 0/1:96:54,42:54:2128:42:1606:-115.887,0,-162.806 0/1:65:54,11:54:2150:11:427:-19.2161,0,-174.117 dDocent_Contig_5706 61 . T C 326.15 . AB=0.48;ABP=3.09716;AC=1;AF=0.125;AN=8;AO=12;CIGAR=1X;DP=64;DPB=64;DPRA=1.92308;EPP=29.068;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=461;QR=1823;RO=52;RPL=12;RPP=29.068;RPPR=115.927;RPR=0;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:21:21,0:21:764:0:0:0,-6.32163,-69.0846 0/0:11:11,0:11:342:0:0:0,-3.31133,-31.0759 0/1:25:13,12:13:449:12:461:-34.3139,0,-33.2097 0/0:7:7,0:7:268:0:0:0,-2.10721,-24.4836 dDocent_Contig_5707 36 . G A 7379.5 . AB=0.594132;ABP=34.4887;AC=4;AF=0.5;AN=8;AO=243;CIGAR=1X;DP=409;DPB=409;DPRA=0;EPP=530.678;EPPR=363.475;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=9633;QR=6658;RO=166;RPL=0;RPP=530.678;RPPR=363.475;RPR=243;RUN=1;SAF=243;SAP=530.678;SAR=0;SRF=166;SRP=363.475;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:128:72,56:72:2875:56:2222:-161.614,0,-220.324 0/1:106:9,97:9:363:97:3840:-313.699,0,-1.12548 0/1:72:40,32:40:1624:32:1270:-92.8966,0,-124.708 0/1:103:45,58:45:1796:58:2301:-176.25,0,-130.852 dDocent_Contig_5708 31 . T C 11924.5 . AB=0.592934;ABP=51.8467;AC=4;AF=0.5;AN=8;AO=386;CIGAR=1X;DP=651;DPB=651;DPRA=0;EPP=841.199;EPPR=578.45;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.997409;PAIREDR=0.992453;PAO=0;PQA=0;PQR=0;PRO=0;QA=15510;QR=10640;RO=265;RPL=0;RPP=841.199;RPPR=578.45;RPR=386;RUN=1;SAF=386;SAP=841.199;SAR=0;SRF=265;SRP=578.45;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:167:58,109:58:2316:109:4407:-346.275,0,-158.314 0/1:160:66,94:66:2633:94:3770:-291.126,0,-188.917 0/1:193:92,101:92:3702:101:4028:-304.393,0,-275.084 0/1:131:49,82:49:1989:82:3305:-258.057,0,-139.758 dDocent_Contig_5709 11 . A G 2360.99 . AB=0.157576;ABP=339.102;AC=4;AF=0.5;AN=8;AO=52;CIGAR=2M1X2M1X;DP=330;DPB=330;DPRA=0;EPP=115.927;EPPR=413.419;GTI=0;LEN=1;MEANALT=2.75;MQM=59.7885;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2049;QR=7365;RO=189;RPL=0;RPP=115.927;RPPR=413.419;RPR=52;RUN=1;SAF=52;SAP=115.927;SAR=0;SRF=189;SRP=413.419;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:81:50,4,2,25:50:1946:4,2,25:160,78,984:-65.8552,-67.7255,-226.441,-74.4953,-221.234,-233.812,0,-146.735,-153.504,-152.39 0|1:118:65,30,12,11:65:2538:30,12,11:1168,465,437:-76.4249,0,-199.6,-57.7926,-170.431,-262.812,-60.012,-172.652,-230.445,-265.334 0|1:73:40,23,2,8:40:1541:23,2,8:888,80,313:-60.8822,0,-119.596,-66.3325,-119.929,-192.255,-47.1877,-100.784,-167.121,-171.304 0|1:58:34,16,0,8:34:1340:16,0,8:616,0,315:-40.3345,0,-105.431,-50.5695,-110.247,-160.82,-24.653,-84.3337,-134.906,-132.498 dDocent_Contig_5710 12 . T C 18569.4 . AB=0.72175;ABP=354.522;AC=4;AF=0.5;AN=8;AO=594;CIGAR=1X1M1X;DP=823;DPB=823;DPRA=0;EPP=1292.86;EPPR=498.106;GTI=0;LEN=1;MEANALT=1.25;MQM=57.133;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.993266;PAIREDR=0.995614;PAO=0;PQA=0;PQR=0;PRO=0;QA=23711;QR=8944;RO=228;RPL=0;RPP=1292.86;RPPR=498.106;RPR=594;RUN=1;SAF=594;SAP=1292.86;SAR=0;SRF=228;SRP=498.106;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:212:50,161:50:1961:161:6430:-508.08,0,-112.81 0|1:212:40,172:40:1583:172:6886:-553.945,0,-78.8984 0|1:230:50,180:50:1964:180:7179:-569.96,0,-107.736 0|1:169:88,81:88:3436:81:3216:-232.352,0,-258.455 dDocent_Contig_5711 19 . G A 804.306 . AB=0.127928;ABP=670.372;AC=3;AF=0.375;AN=8;AO=79;CIGAR=1X;DP=663;DPB=663;DPRA=0;EPP=174.557;EPPR=1271.15;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3119;QR=23045;RO=584;RPL=0;RPP=174.557;RPPR=1271.15;RPR=79;RUN=1;SAF=79;SAP=174.557;SAR=0;SRF=584;SRP=1271.15;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:225:205,20:205:8035:20:792:-3.86073,0,-654.994 0/1:167:150,17:150:5953:17:677:-10.985,0,-485.285 0/1:163:129,34:129:5076:34:1331:-70.9813,0,-407.667 0/0:108:100,8:100:3981:8:319:0,-3.43491,-329.197 dDocent_Contig_5712 37 . T A 35.4081 . AB=0.104167;ABP=68.3354;AC=1;AF=0.125;AN=8;AO=8;CIGAR=2X1M2X1M;DP=144;DPB=144.333;DPRA=3.16667;EPP=20.3821;EPPR=291.816;GTI=0;LEN=1;MEANALT=1.5;MQM=51.875;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0.932331;PAO=0;PQA=0;PQR=0;PRO=0;QA=295;QR=5115;RO=133;RPL=0;RPP=20.3821;RPPR=291.816;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=133;SRP=291.816;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:48:43,5,0:43:1655:5,0:194,0:-3.32972,0,-134.754,-16.274,-136.259,-152.147 0|0:66:62,3,0:62:2380:3,0:101,0:0,-10.8077,-205.235,-18.6639,-206.138,-214.046 0|0:18:18,0,0:18:690:0,0:0,0:0,-5.41854,-62.4293,-5.41854,-62.4293,-62.4293 0|0:12:10,0,2:10:390:0,2:0,76:-3.60118,-6.61148,-38.6775,0,-32.4474,-31.8453 dDocent_Contig_5713 11 . A G 56.686 . AB=0.1;ABP=169.779;AC=2;AF=0.25;AN=8;AO=12;CIGAR=6M1X5M;DP=231;DPB=232.167;DPRA=1.08108;EPP=29.068;EPPR=454.677;GTI=0;LEN=1;MEANALT=2;MQM=59.75;MQMR=59.8558;NS=4;NUMALT=2;ODDS=1.38778e-17;PAIRED=0.666667;PAIREDR=0.975962;PAO=0;PQA=0;PQR=0;PRO=0;QA=484;QR=8110;RO=208;RPL=0;RPP=29.068;RPPR=454.677;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=208;SRP=454.677;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:76:65,2,8:65:2547:2,8:76,322:-7.01338,-20.3487,-229.164,0,-203.227,-207.052 0|0:59:52,4,0:52:2026:4,0:150,0:0,-3.31852,-168.73,-15.6536,-169.934,-182.22 0|1:44:40,0,4:40:1555:0,4:0,162:-1.7167,-13.7579,-141.437,0,-128.082,-126.878 0|0:52:51,1,0:51:1982:1,0:39,0:0,-11.757,-174.713,-15.3525,-175.014,-178.22 dDocent_Contig_5714 8 . C T 1105.57 . AB=0.230769;ABP=150.336;AC=4;AF=0.5;AN=8;AO=54;CIGAR=1X;DP=234;DPB=234;DPRA=0;EPP=120.27;EPPR=393.875;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2078;QR=6940;RO=180;RPL=0;RPP=120.27;RPPR=393.875;RPR=54;RUN=1;SAF=54;SAP=120.27;SAR=0;SRF=180;SRP=393.875;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:69:57,12:57:2197:12:459:-20.8878,0,-177.182 0/1:55:26,29:26:1004:29:1123:-84.8147,0,-74.1134 0/1:85:76,9:76:2937:9:344:-5.72901,0,-238.907 0/1:25:21,4:21:802:4:152:-6.52345,0,-64.9773 dDocent_Contig_5715 7 . A C 2036.49 . AB=0.407407;ABP=17.0847;AC=4;AF=0.5;AN=8;AO=77;CIGAR=1M1X1M;DP=189;DPB=187.333;DPRA=0;EPP=170.214;EPPR=235.358;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=1.38778e-17;PAIRED=0.701299;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2950;QR=4106;RO=107;RPL=0;RPP=170.214;RPPR=235.358;RPR=77;RUN=1;SAF=77;SAP=170.214;SAR=0;SRF=107;SRP=235.358;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:43:21,0,22:21:795:0,22:0,839:-62.8863,-69.2079,-134.381,0,-65.5524,-58.9297 0|1:56:32,0,24:32:1234:0,24:0,925:-66.7081,-76.341,-177.677,0,-101.721,-94.4962 0|1:62:41,5,16:41:1576:5,16:190,612:-37.8796,-34.6405,-162.522,0,-113.807,-124.572 0|1:28:13,0,15:13:501:0,15:0,574:-43.5732,-47.4866,-88.6272,0,-41.5245,-37.009 dDocent_Contig_5716 22 . G A 1235.15 . AB=0.351145;ABP=28.2226;AC=1;AF=0.125;AN=8;AO=49;CIGAR=1X;DP=284;DPB=284;DPRA=1.6055;EPP=109.412;EPPR=513.306;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.995745;PAO=0;PQA=0;PQR=0;PRO=0;QA=1950;QR=8786;RO=235;RPL=0;RPP=109.412;RPPR=513.306;RPR=49;RUN=1;SAF=49;SAP=109.412;SAR=0;SRF=235;SRP=513.306;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:89:89,0:89:3347:0:0:0,-26.7917,-301.351 0/1:131:85,46:85:3157:46:1827:-125.214,0,-244.82 0/0:44:41,3:41:1544:3:123:0,-1.78053,-127.754 0/0:20:20,0:20:738:0:0:0,-6.0206,-66.7301 dDocent_Contig_5717 18 . G A 7957.43 . AB=0.568966;ABP=22.1792;AC=4;AF=0.5;AN=8;AO=264;CIGAR=1X;DP=464;DPB=464;DPRA=0;EPP=576.279;EPPR=437.305;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.984848;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=10470;QR=8022;RO=200;RPL=0;RPP=576.279;RPPR=437.305;RPR=264;RUN=1;SAF=264;SAP=576.279;SAR=0;SRF=200;SRP=437.305;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:134:48,86:48:1939:86:3429:-268.321,0,-134.36 0/1:136:70,66:70:2768:66:2629:-195.799,0,-208.294 0/1:104:36,68:36:1457:68:2688:-210.734,0,-100.067 0/1:90:46,44:46:1858:44:1724:-128.287,0,-140.327 dDocent_Contig_5718 169 . G A 247.404 . AB=0.110714;ABP=371.571;AC=1;AF=0.125;AN=8;AO=32;CIGAR=1X;DP=873;DPB=873;DPRA=1.11893;EPP=72.4974;EPPR=1827.05;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.9375;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1247;QR=33287;RO=840;RPL=32;RPP=72.4974;RPPR=1827.05;RPR=0;RUN=1;SAF=0;SAP=72.4974;SAR=32;SRF=0;SRP=1827.05;SRR=840;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:280:249,31:249:9914:31:1224:-26.1383,0,-807.311 0/0:242:242,0:242:9572:0:0:0,-72.8493,-860.888 0/0:170:170,0:170:6672:0:0:0,-51.1751,-600.192 0/0:181:179,1:179:7129:1:23:0,-52.0405,-639.033 dDocent_Contig_5719 10 . C T 15719.5 . AB=0.0378469;ABP=2208.82;AC=0;AF=0;AN=8;AO=45;CIGAR=2M1X4M;DP=1189;DPB=1600.43;DPRA=0;EPP=100.727;EPPR=1229.89;GTI=0;LEN=1;MEANALT=3.25;MQM=60;MQMR=59.8301;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.99292;PAO=0;PQA=0;PQR=0;PRO=0;QA=1801;QR=22119;RO=565;RPL=0;RPP=100.727;RPPR=1229.89;RPR=45;RUN=1;SAF=45;SAP=100.727;SAR=0;SRF=565;SRP=1229.89;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:307:139,166,2:139:5456:166,2:6185,80:-464.403,0,-393.708,-499.656,-437.089,-942.751 0|0:313:128,165,19:128:5035:165,19:6138,768:-463.788,0,-364.497,-439,-350.848,-847.464 0|0:293:136,132,22:136:5296:132,22:4889,885:-359.006,0,-395.512,-327.007,-362.312,-755.647 0|0:276:162,111,2:162:6332:111,2:4162,68:-292.148,0,-487.19,-335.402,-515.093,-855.381 dDocent_Contig_5720 35 . A G 477.777 . AB=0.265823;ABP=40.64;AC=3;AF=0.375;AN=8;AO=21;CIGAR=1X1M1X;DP=89;DPB=89;DPRA=2.63333;EPP=48.6112;EPPR=150.67;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=829;QR=2678;RO=68;RPL=0;RPP=48.6112;RPPR=150.67;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=68;SRP=150.67;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:10:10,0:10:397:0:0:0,-3.0103,-36.0897 0|1:60:42,18:42:1645:18:708:-45.9854,0,-130.229 0|1:8:6,2:6:240:2:80:-5.18355,0,-19.5663 0|1:11:10,1:10:396:1:41:-0.783237,0,-32.6873 dDocent_Contig_5721 200 . A G 33.7078 . AB=0.128205;ABP=49.8362;AC=2;AF=0.25;AN=8;AO=5;CIGAR=1X;DP=84;DPB=84;DPRA=0.866667;EPP=13.8677;EPPR=174.557;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=197;QR=2954;RO=79;RPL=5;RPP=13.8677;RPPR=174.557;RPR=0;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=174.557;SRR=79;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:26:26,0:26:983:0:0:0,-7.82678,-88.7788 0/0:19:19,0:19:692:0:0:0,-5.71957,-62.5958 0/1:25:22,3:22:845:3:119:-3.56964,0,-68.846 0/1:14:12,2:12:434:2:78:-3.18905,0,-35.1741 dDocent_Contig_5722 32 . A T 2981.05 . AB=0.0431034;ABP=423.677;AC=0;AF=0;AN=8;AO=10;CIGAR=2X3M1X1M1X1M1X;DP=269;DPB=269;DPRA=0;EPP=24.725;EPPR=328.731;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=396;QR=5862;RO=150;RPL=0;RPP=24.725;RPPR=328.731;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=150;SRP=328.731;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:116:53,3,60:53:2073:3,60:118,2381:-180.048,-186.296,-355.824,0,-160.725,-152.37 0|0:56:39,2,15:39:1498:2,15:80,572:-35.1594,-40.3072,-162.658,0,-116.345,-118.42 0|0:60:35,5,20:35:1379:5,20:198,797:-55.0976,-49.3371,-161.278,0,-97.1503,-107.427 0|0:37:23,0,13:23:912:0,13:0,512:-35.1978,-42.1215,-117.196,0,-75.0787,-71.1654 dDocent_Contig_5723 181 . A T 975.624 . AB=0.158163;ABP=400.877;AC=3;AF=0.375;AN=8;AO=64;CIGAR=1X;DP=557;DPB=557;DPRA=0;EPP=141.985;EPPR=674.313;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2518;QR=19708;RO=492;RPL=64;RPP=141.985;RPPR=674.313;RPR=0;RUN=1;SAF=0;SAP=141.985;SAR=64;SRF=0;SRP=1071.37;SRR=492;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:184:148,35:148:5947:35:1391:-69.9443,0,-479.493 0/0:165:163,2:163:6550:2:72:0,-42.8356,-582.35 0/1:115:103,12:103:4128:12:476:-8.57045,0,-336.864 0/1:93:78,15:78:3083:15:579:-24.4455,0,-249.556 dDocent_Contig_5724 8 . C A 40.0127 . AB=0.125;ABP=51.8684;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=164;DPB=164;DPRA=0.54717;EPP=16.0391;EPPR=346.103;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=232;QR=6074;RO=158;RPL=0;RPP=16.0391;RPPR=346.103;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=158;SRP=346.103;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:82:82,0:82:3145:0:0:0,-24.6845,-283.204 0/1:40:35,5:35:1340:5:193:-5.70016,0,-108.845 0/0:18:17,1:17:656:1:39:0,-1.52198,-55.4805 0/0:24:24,0:24:933:0:0:0,-7.22472,-84.286 dDocent_Contig_5725 18 . G A 94.8976 . AB=0.0962343;ABP=341.442;AC=1;AF=0.125;AN=8;AO=23;CIGAR=1X;DP=624;DPB=624;DPRA=1.86234;EPP=52.9542;EPPR=1308.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=917;QR=24066;RO=601;RPL=0;RPP=52.9542;RPPR=1308.07;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=601;SRP=1308.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:239:216,23:216:8625:23:917:-10.8877,0,-703.793 0/0:155:155,0:155:6215:0:0:0,-46.6596,-559.087 0/0:120:120,0:120:4813:0:0:0,-36.1236,-433.052 0/0:110:110,0:110:4413:0:0:0,-33.1133,-397.095 dDocent_Contig_5726 11 . T C 150.433 . AB=0.118881;ABP=183.425;AC=2;AF=0.25;AN=8;AO=17;CIGAR=1X;DP=211;DPB=211;DPRA=2.10294;EPP=39.9253;EPPR=422.104;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=675;QR=7619;RO=193;RPL=0;RPP=39.9253;RPPR=422.104;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=193;SRP=422.104;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:104:91,13:91:3563:13:514:-15.298,0,-289.406 0/1:39:35,4:35:1389:4:161:-3.13531,0,-113.528 0/0:46:46,0:46:1823:0:0:0,-13.8474,-164.289 0/0:22:21,0:21:844:0:0:0,-6.32163,-75.8727 dDocent_Contig_5727 79 . C T 1330.98 . AB=0.340909;ABP=41.702;AC=3;AF=0.375;AN=8;AO=63;CIGAR=1X;DP=227;DPB=227;DPRA=0;EPP=139.813;EPPR=359.132;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2228;QR=5589;RO=164;RPL=63;RPP=139.813;RPPR=359.132;RPR=0;RUN=1;SAF=63;SAP=139.813;SAR=0;SRF=164;SRP=359.132;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:58:50,8:50:1688:8:265:-6.71138,0,-134.745 0/1:52:14,38:14:488:38:1355:-106.589,0,-28.5981 0/1:66:52,14:52:1773:14:497:-25.1953,0,-139.988 0/0:51:48,3:48:1640:3:111:0,-4.99861,-137.532 dDocent_Contig_5728 14 . C G 167.803 . AB=0.112299;ABP=247.156;AC=1;AF=0.125;AN=8;AO=21;CIGAR=1X;DP=473;DPB=473;DPRA=1.96154;EPP=48.6112;EPPR=984.516;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=824;QR=18041;RO=452;RPL=0;RPP=48.6112;RPPR=984.516;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=452;SRP=984.516;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:187:166,21:166:6645:21:824:-18.1783,0,-541.453 0/0:118:118,0:118:4689:0:0:0,-35.5215,-421.923 0/0:104:104,0:104:4114:0:0:0,-31.3071,-370.227 0/0:64:64,0:64:2593:0:0:0,-19.2659,-233.486 dDocent_Contig_5729 32 . T A 49.4934 . AB=0.1875;ABP=16.582;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=72;DPB=72;DPRA=0.857143;EPP=9.52472;EPPR=152.842;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=123;QR=2792;RO=69;RPL=0;RPP=9.52472;RPPR=152.842;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=69;SRP=152.842;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:21:21,0:21:856:0:0:0,-6.32163,-77.3489 0/0:25:25,0:25:1015:0:0:0,-7.52575,-91.6425 0/0:10:10,0:10:396:0:0:0,-3.0103,-35.9959 0/1:16:13,3:13:525:3:123:-6.64831,0,-42.7808 dDocent_Contig_5730 98 . N A 415.218 . AB=0;ABP=0;AC=4;AF=0.666667;AN=6;AO=13;CIGAR=1X;DP=15;DPB=15;DPRA=7;EPP=31.2394;EPPR=0;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=451;QR=0;RO=0;RPL=13;RPP=31.2394;RPPR=0;RPR=0;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:1:0,0:0:0:0:0:0,0,0 ./.:.:.:.:.:.:.:. 1/1:8:0,7:0:0:7:244:-21.9504,-2.10721,0 1/1:6:0,6:0:0:6:207:-18.9682,-1.80618,0 dDocent_Contig_5731 57 . T C 2780.52 . AB=0.518919;ABP=3.58545;AC=4;AF=0.5;AN=8;AO=96;CIGAR=1X;DP=185;DPB=185;DPRA=0;EPP=211.472;EPPR=196.271;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3777;QR=3446;RO=89;RPL=96;RPP=211.472;RPPR=196.271;RPR=0;RUN=1;SAF=96;SAP=211.472;SAR=0;SRF=89;SRP=196.271;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:40:31,9:31:1166:9:361:-20.8121,0,-93.1803 0/1:71:30,41:30:1166:41:1600:-122.859,0,-83.8489 0/1:31:11,20:11:443:20:800:-62.9863,0,-30.8936 0/1:43:17,26:17:671:26:1016:-78.7927,0,-47.7746 dDocent_Contig_5732 15 . C T 141.212 . AB=0.15873;ABP=66.7413;AC=2;AF=0.25;AN=8;AO=11;CIGAR=1X;DP=99;DPB=99;DPRA=2.02381;EPP=26.8965;EPPR=194.1;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=438;QR=3538;RO=88;RPL=0;RPP=26.8965;RPPR=194.1;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=88;SRP=194.1;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:34:30,4:30:1203:4:158:-4.36488,0,-98.3055 0/1:29:23,6:23:922:6:239:-13.1538,0,-74.5476 0/0:22:21,1:21:846:1:41:0,-2.52809,-72.3574 0/0:14:14,0:14:567:0:0:0,-4.21442,-51.3718 dDocent_Contig_5733 197 . A G 7279.58 . AB=0.543689;ABP=4.71796;AC=6;AF=0.75;AN=8;AO=236;CIGAR=1X;DP=298;DPB=298;DPRA=0;EPP=515.478;EPPR=137.642;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=9029;QR=2374;RO=62;RPL=236;RPP=515.478;RPPR=137.642;RPR=0;RUN=1;SAF=0;SAP=515.478;SAR=236;SRF=0;SRP=137.642;SRR=62;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:105:9,96:9:331:96:3678:-300.995,-1.47545,0 1/1:90:6,84:6:229:84:3198:-266.988,-6.11739,0 0/1:61:35,26:35:1351:26:996:-71.5879,0,-103.512 0/1:42:12,30:12:463:30:1157:-91.7848,0,-29.3782 dDocent_Contig_5734 1 . N A 74.0109 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=4;CIGAR=1X1M5I2M;DP=4;DPB=9;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=21.75;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=87;QR=0;RO=0;RPL=0;RPP=11.6962;RPPR=0;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:1:0,1:0:0:1:15:-1.20589,-0.30103,0 .:.:.:.:.:.:.:. 1|1:3:0,3:0:0:3:72:-5.87954,-0.90309,0 .:.:.:.:.:.:.:. dDocent_Contig_5736 30 . G A 22644.2 . AB=0.709268;ABP=392.903;AC=4;AF=0.5;AN=8;AO=727;CIGAR=1X;DP=1025;DPB=1025;DPRA=0;EPP=1581.67;EPPR=647.938;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=5.55112e-17;PAIRED=0.995873;PAIREDR=0.993266;PAO=0;PQA=0;PQR=0;PRO=0;QA=28686;QR=11813;RO=297;RPL=0;RPP=1581.67;RPPR=647.938;RPR=727;RUN=1;SAF=727;SAP=1581.67;SAR=0;SRF=297;SRP=647.938;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:331:93,238:93:3736:238:9422:-747.787,0,-236.605 0/1:258:89,169:89:3532:169:6599:-515.999,0,-240.251 0/1:302:71,230:71:2798:230:9093:-726.846,0,-160.917 0/1:134:44,90:44:1747:90:3572:-281.185,0,-117.11 dDocent_Contig_5737 51 . G A 3818.69 . AB=0.474048;ABP=4.70089;AC=4;AF=0.5;AN=8;AO=137;CIGAR=1X;DP=289;DPB=289;DPRA=0;EPP=275.015;EPPR=324.445;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.948905;PAIREDR=0.960526;PAO=0;PQA=0;PQR=0;PRO=0;QA=5280;QR=5910;RO=152;RPL=137;RPP=300.502;RPPR=333.074;RPR=0;RUN=1;SAF=134;SAP=275.015;SAR=3;SRF=151;SRP=324.445;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:122:67,55:67:2577:55:2102:-152.655,0,-195.341 0/1:77:44,33:44:1723:33:1266:-91.0223,0,-132.119 0/1:54:18,36:18:726:36:1394:-109.461,0,-49.4108 0/1:36:23,13:23:884:13:518:-36.1287,0,-69.0226 dDocent_Contig_5738 12 . C T 1942.83 . AB=0.234694;ABP=122.84;AC=1;AF=0.125;AN=8;AO=46;CIGAR=1X2M1X;DP=196;DPB=196;DPRA=0;EPP=102.898;EPPR=172.385;GTI=0;LEN=1;MEANALT=2.25;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=0.76087;PAIREDR=0.948718;PAO=0;PQA=0;PQR=0;PRO=0;QA=1807;QR=3085;RO=78;RPL=0;RPP=102.898;RPPR=172.385;RPR=46;RUN=1;SAF=46;SAP=102.898;SAR=0;SRF=78;SRP=172.385;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:64:17,0,13,34:17:656:0,13,34:0,519,1357:-106.64,-111.758,-165.617,-69.0129,-122.871,-118.958,0,-53.8554,-11.1048,-43.6203 0|0:58:32,0,12,14:32:1270:0,12,14:0,463,549:-35.516,-45.1489,-149.698,-7.13568,-111.684,-108.071,0,-104.553,-66.5395,-100.338 0|1:50:19,12,14,5:19:754:12,14,5:485,550,198:-39.5124,-5.24219,-63.7004,0,-22.0782,-57.852,-28.9368,-51.0172,-45.7714,-89.5002 0|0:24:10,0,7,7:10:405:0,7,7:0,275,279:-19.9675,-22.9778,-56.3774,-0.362092,-33.7617,-31.6544,0,-33.4029,-10.7894,-31.2957 dDocent_Contig_5739 27 . T A 1472.91 . AB=0.214485;ABP=257.206;AC=1;AF=0.125;AN=8;AO=128;CIGAR=1X;DP=1223;DPB=1223;DPRA=0;EPP=280.959;EPPR=2380.77;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.99726;PAO=0;PQA=0;PQR=0;PRO=0;QA=4728;QR=41311;RO=1095;RPL=0;RPP=280.959;RPPR=2380.77;RPR=128;RUN=1;SAF=128;SAP=280.959;SAR=0;SRF=1095;SRP=2380.77;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:355:330,25:330:12436:25:910:0,-24.6571,-1036.49 0/1:359:282,77:282:10601:77:2854:-148.99,0,-845.59 0/0:340:321,19:321:12079:19:699:0,-39.112,-1023.35 0/0:169:162,7:162:6195:7:265:0,-26.6632,-533.249 dDocent_Contig_5741 45 . C T 2582.13 . AB=0.427313;ABP=13.4276;AC=4;AF=0.5;AN=8;AO=97;CIGAR=1X;DP=227;DPB=227;DPRA=0;EPP=213.643;EPPR=285.302;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.989691;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3697;QR=5144;RO=130;RPL=0;RPP=213.643;RPPR=285.302;RPR=97;RUN=1;SAF=97;SAP=213.643;SAR=0;SRF=130;SRP=285.302;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:58:40,18:40:1589:18:701:-45.9579,0,-125.786 0/1:85:45,40:45:1797:40:1517:-111.202,0,-136.355 0/1:60:30,30:30:1190:30:1153:-85.9991,0,-89.3142 0/1:24:15,9:15:568:9:326:-22.4522,0,-44.2234 dDocent_Contig_5742 59 . G A 655.918 . AB=0.278846;ABP=47.1914;AC=2;AF=0.25;AN=8;AO=41;CIGAR=1X2M1X;DP=272;DPB=272;DPRA=0;EPP=92.0407;EPPR=504.62;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1574;QR=8862;RO=231;RPL=41;RPP=92.0407;RPPR=504.62;RPR=0;RUN=1;SAF=41;SAP=92.0407;SAR=0;SRF=231;SRP=504.62;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:86:79,7:79:3021:7:271:0,-1.13517,-247.277 0|0:82:77,5:77:2948:5:196:0,-6.66975,-247.457 0|1:61:46,15:46:1770:15:562:-32.5429,0,-141.173 0|1:43:29,14:29:1123:14:545:-36.4468,0,-88.4238 dDocent_Contig_5743 7 . A G 1221.57 . AB=0.171975;ABP=149.744;AC=2;AF=0.25;AN=8;AO=27;CIGAR=2X;DP=247;DPB=247;DPRA=0;EPP=61.6401;EPPR=376.504;GTI=0;LEN=1;MEANALT=2.66667;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=2.77556e-17;PAIRED=1;PAIREDR=0.976744;PAO=0;PQA=0;PQR=0;PRO=0;QA=892;QR=6619;RO=172;RPL=0;RPP=61.6401;RPPR=376.504;RPR=27;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=172;SRP=376.504;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:90:66,0,24:66:2532:0,24:0,928:-56.7436,-76.6115,-284.44,0,-208.214,-200.989 0|0:60:32,9,19:32:1232:9,19:337,733:-50.5695,-32.606,-131.053,0,-73.5673,-95.4455 0|1:62:49,10,2:49:1891:10,2:307,78:-9.81925,0,-152.314,-18.1451,-148.912,-172.908 0|1:35:25,8,1:25:964:8,1:248,32:-12.4228,0,-76.8762,-17.3679,-76.7083,-96.2959 dDocent_Contig_5744 78 . A T 82.1888 . AB=0.15;ABP=45.5712;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=191;DPB=191;DPRA=1.05376;EPP=18.2106;EPPR=400.39;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=281;QR=7122;RO=183;RPL=7;RPP=18.2106;RPPR=400.39;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=183;SRP=400.39;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:79:79,0:79:3041:0:0:0,-23.7814,-273.795 0/0:58:57,1:57:2246:1:40:0,-13.4641,-198.321 0/0:14:14,0:14:525:0:0:0,-4.21442,-47.5841 0/1:40:33,6:33:1310:6:241:-9.91785,0,-106.014 dDocent_Contig_5745 63 . A G 65.8798 . AB=0.118421;ABP=99.1265;AC=2;AF=0.25;AN=8;AO=12;CIGAR=1X;DP=129;DPB=129;DPRA=0;EPP=29.068;EPPR=257.073;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=473;QR=4540;RO=117;RPL=12;RPP=29.068;RPPR=257.073;RPR=0;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=117;SRP=257.073;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:32:30,2:30:1164:2:82:0,-1.85328,-97.2493 0/1:41:37,4:37:1467:4:157:-2.16566,0,-119.936 0/1:35:30,5:30:1161:5:199:-7.7518,0,-94.2353 0/0:21:20,1:20:748:1:35:0,-2.823,-64.1255 dDocent_Contig_5746 7 . A G 83.6342 . AB=0.16;ABP=53.2147;AC=2;AF=0.25;AN=8;AO=9;CIGAR=1X1M1X;DP=142;DPB=142;DPRA=0.613333;EPP=22.5536;EPPR=283.13;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=328;QR=4882;RO=129;RPL=0;RPP=22.5536;RPPR=283.13;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=129;SRP=283.13;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:50:48,0:48:1826:0:0:0,-14.4494,-164.34 0|0:42:39,1:39:1468:1:38:0,-8.5887,-128.671 0|1:28:23,5:23:863:5:179:-8.02878,0,-69.5602 0|1:22:19,3:19:725:3:111:-3.73057,0,-58.959 dDocent_Contig_5747 38 . G A 163.271 . AB=0.166667;ABP=60.9162;AC=1;AF=0.125;AN=8;AO=13;CIGAR=1X;DP=278;DPB=278;DPRA=0.705521;EPP=31.2394;EPPR=578.45;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=516;QR=10530;RO=265;RPL=0;RPP=31.2394;RPPR=578.45;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=265;SRP=578.45;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:130:130,0:130:5125:0:0:0,-39.1339,-461.118 0/1:60:50,10:50:2020:10:397:-18.0261,0,-163.922 0/0:55:52,3:52:2054:3:119:0,-5.46164,-173.948 0/0:33:33,0:33:1331:0:0:0,-9.93399,-120.05 dDocent_Contig_5748 44 . T A 288.852 . AB=0.115523;ABP=358.669;AC=2;AF=0.25;AN=8;AO=36;CIGAR=1X;DP=428;DPB=428;DPRA=1.82828;EPP=81.1833;EPPR=834.773;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.959079;PAO=0;PQA=0;PQR=0;PRO=0;QA=1442;QR=15554;RO=391;RPL=0;RPP=81.1833;RPPR=834.773;RPR=36;RUN=1;SAF=36;SAP=81.1833;SAR=0;SRF=391;SRP=852.056;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:152:132,19:132:5228:19:760:-22.8564,0,-424.515 0/1:125:112,13:112:4499:13:519:-9.42681,0,-367.21 0/0:66:66,0:66:2626:0:0:0,-19.868,-236.467 0/0:85:81,4:81:3201:4:163:0,-10.5291,-273.106 dDocent_Contig_5749 18 . G A 6100.06 . AB=0.477169;ABP=4.99338;AC=4;AF=0.5;AN=8;AO=209;CIGAR=2X2M;DP=438;DPB=438;DPRA=0;EPP=456.848;EPPR=448.162;GTI=0;LEN=1;MEANALT=2.25;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=8249;QR=8045;RO=205;RPL=0;RPP=456.848;RPPR=448.162;RPR=209;RUN=1;SAF=209;SAP=456.848;SAR=0;SRF=205;SRP=448.162;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:179:85,0,94,0:85:3354:0,94,0:0,3719,0:-280.853,-306.441,-582.404,0,-276.357,-248.061,-306.441,-582.404,-276.357,-582.404 0|1:161:82,15,63,0:82:3212:15,63,0:581,2492,0:-180.393,-157.351,-416.939,0,-216.381,-245.143,-205.077,-421.455,-264.108,-469.181 0|1:60:16,3,39,2:16:632:3,39,2:119,1520,82:-120.096,-115.116,-166.219,0,-42.2043,-40.2599,-118.143,-160.354,-45.2305,-169.548 0|1:38:22,0,13,3:22:847:0,13,3:0,518,108:-36.0627,-42.6853,-112.214,0,-69.5545,-65.6412,-33.8846,-103.409,-60.7496,-102.506 dDocent_Contig_5750 11 . T G 1347.02 . AB=0.114679;ABP=284.146;AC=2;AF=0.25;AN=8;AO=25;CIGAR=2X1M;DP=218;DPB=218;DPRA=0;EPP=57.2971;EPPR=322.217;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=966;QR=5836;RO=147;RPL=0;RPP=57.2971;RPPR=322.217;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=147;SRP=322.217;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:73:60,5,8:60:2396:5,8:203,308:-7.21373,-8.52512,-204.368,0,-180.586,-194.921 0|1:53:32,6,15:32:1280:6,15:232,582:-38.1858,-28.769,-132.41,0,-86.4021,-100.935 0|0:66:42,23,1:42:1655:23,1:903,36:-61.6179,0,-129.254,-71.3251,-133.241,-207.17 0|0:26:13,12,1:13:505:12,1:474,40:-35.0825,0,-37.8689,-35.7005,-38.1853,-76.888 dDocent_Contig_5751 28 . A T 96.2127 . AB=0.162162;ABP=39.6906;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=174;DPB=174;DPRA=0.810219;EPP=16.0391;EPPR=367.818;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.97619;PAO=0;PQA=0;PQR=0;PRO=0;QA=242;QR=6513;RO=168;RPL=0;RPP=16.0391;RPPR=367.818;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=168;SRP=367.818;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:37:31,6:31:1192:6:242:-11.0192,0,-96.4314 0/0:51:51,0:51:1985:0:0:0,-15.3525,-178.864 0/0:43:43,0:43:1675:0:0:0,-12.9443,-150.997 0/0:43:43,0:43:1661:0:0:0,-12.9443,-149.739 dDocent_Contig_5752 14 . C A 4279.8 . AB=0.512456;ABP=3.38896;AC=4;AF=0.5;AN=8;AO=144;CIGAR=1X;DP=281;DPB=281;DPRA=0;EPP=315.702;EPPR=298.331;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5767;QR=5398;RO=136;RPL=0;RPP=315.702;RPPR=298.331;RPR=144;RUN=1;SAF=144;SAP=315.702;SAR=0;SRF=136;SRP=298.331;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:76:43,33:43:1693:33:1336:-97.6204,0,-129.719 0/1:83:37,46:37:1455:46:1853:-141.992,0,-106.21 0/1:80:43,36:43:1727:36:1421:-104.001,0,-131.498 0/1:42:13,29:13:523:29:1157:-91.765,0,-34.774 dDocent_Contig_5753 194 . T C 515.57 . AB=0.350877;ABP=14.02;AC=3;AF=0.375;AN=8;AO=20;CIGAR=1X;DP=64;DPB=64;DPRA=2.71429;EPP=46.4397;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=811;QR=1752;RO=44;RPL=20;RPP=46.4397;RPPR=98.5551;RPR=0;RUN=1;SAF=0;SAP=46.4397;SAR=20;SRF=0;SRP=98.5551;SRR=44;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:10,5:10:395:5:199:-13.7729,0,-31.3859 0/0:7:7,0:7:282:0:0:0,-2.10721,-25.7526 0/1:10:6,4:6:246:4:164:-12.1396,0,-19.5098 0/1:32:21,11:21:829:11:448:-31.0424,0,-65.2873 dDocent_Contig_5756 19 . C A 24615.5 . AB=0.748811;ABP=568.149;AC=4;AF=0.5;AN=8;AO=787;CIGAR=1X;DP=1051;DPB=1051;DPRA=0;EPP=1711.96;EPPR=576.279;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=30964;QR=10487;RO=264;RPL=0;RPP=1711.96;RPPR=576.279;RPR=787;RUN=1;SAF=787;SAP=1711.96;SAR=0;SRF=264;SRP=576.279;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:348:74,274:74:2943:274:10768:-863.706,0,-160.206 0/1:312:88,224:88:3497:224:8844:-701.567,0,-220.844 0/1:227:44,183:44:1742:183:7185:-578.022,0,-88.6589 0/1:164:58,106:58:2305:106:4167:-325.657,0,-158.242 dDocent_Contig_5757 209 . N G 165.992 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=5;CIGAR=1X;DP=5;DPB=5;DPRA=0;EPP=3.44459;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=45.6;MQMR=0;NS=3;NUMALT=1;ODDS=1.69407e-21;PAIRED=0.6;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=189;QR=0;RO=0;RPL=5;RPP=13.8677;RPPR=0;RPR=0;RUN=1;SAF=2;SAP=3.44459;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:113:-9.56661,-0.90309,0 1/1:1:0,1:0:0:1:41:-4.09457,-0.30103,0 1/1:1:0,1:0:0:1:35:-2.45873,-0.30103,0 dDocent_Contig_5758 184 . G A 799.1 . AB=0.218391;ABP=122.866;AC=4;AF=0.5;AN=8;AO=38;CIGAR=1X;DP=174;DPB=174;DPRA=0;EPP=85.5263;EPPR=289.709;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.4853;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=0.985294;PAO=0;PQA=0;PQR=0;PRO=0;QA=1536;QR=5279;RO=136;RPL=38;RPP=85.5263;RPPR=281.214;RPR=0;RUN=1;SAF=0;SAP=85.5263;SAR=38;SRF=1;SRP=289.709;SRR=135;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:78:62,16:62:2396:16:652:-35.5324,0,-192.309 0/1:24:19,5:19:728:5:203:-11.4283,0,-58.6026 0/1:37:25,12:25:1006:12:480:-32.4127,0,-76.7903 0/1:35:30,5:30:1149:5:201:-7.93447,0,-93.1453 dDocent_Contig_5759 73 . A C 144.133 . AB=0.204082;ABP=40.2799;AC=2;AF=0.25;AN=8;AO=11;CIGAR=1X;DP=134;DPB=134;DPRA=0.637681;EPP=26.8965;EPPR=270.101;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.99187;PAO=0;PQA=0;PQR=0;PRO=0;QA=391;QR=4262;RO=123;RPL=11;RPP=26.8965;RPPR=270.101;RPR=0;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=123;SRP=270.101;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:46:46,0:46:1588:0:0:0,-13.8474,-143.205 0/0:39:38,1:38:1323:1:37:0,-8.04234,-115.668 0/1:22:19,3:19:650:3:109:-3.54534,0,-52.1933 0/1:27:20,7:20:701:7:245:-14.2628,0,-55.2854 dDocent_Contig_5762 119 . T A 382.635 . AB=0.148789;ABP=312.644;AC=3;AF=0.375;AN=8;AO=49;CIGAR=1X;DP=362;DPB=362;DPRA=0;EPP=109.412;EPPR=682.681;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1651;QR=10405;RO=313;RPL=0;RPP=109.412;RPPR=682.681;RPR=49;RUN=1;SAF=0;SAP=109.412;SAR=49;SRF=0;SRP=682.681;SRR=313;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:126:103,23:103:3479:23:767:-31.4113,0,-275.41 0/1:120:106,14:106:3452:14:467:-6.22629,0,-274.774 0/0:73:67,6:67:2237:6:210:0,-2.73273,-182.348 0/1:43:37,6:37:1237:6:207:-6.0238,0,-98.6823 dDocent_Contig_5763 11 . G T 252.366 . AB=0.285714;ABP=16.9698;AC=1;AF=0.125;AN=8;AO=10;CIGAR=1X;DP=147;DPB=147;DPRA=0.9375;EPP=24.725;EPPR=300.502;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=409;QR=5342;RO=137;RPL=0;RPP=24.725;RPPR=300.502;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=137;SRP=300.502;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:35:25,10:25:998:10:409:-26.6345,0,-79.5839 0/0:27:27,0:27:1034:0:0:0,-8.12781,-93.3465 0/0:57:57,0:57:2237:0:0:0,-17.1587,-201.516 0/0:28:28,0:28:1073:0:0:0,-8.42884,-96.8573 dDocent_Contig_5764 11 . G T 234.262 . AB=0.130081;ABP=149.205;AC=1;AF=0.125;AN=8;AO=26;CIGAR=3M1X4M;DP=502;DPB=504.25;DPRA=1.18788;EPP=59.4686;EPPR=986.687;GTI=0;LEN=1;MEANALT=3.33333;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.461538;PAIREDR=0.993377;PAO=0;PQA=0;PQR=0;PRO=0;QA=1047;QR=17504;RO=453;RPL=0;RPP=59.4686;RPPR=986.687;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=453;SRP=986.687;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:231:215,6,8:215:8298:6,8:230,322:0,-45.8282,-725.517,-38.139,-700.785,-717.254 0|1:123:95,10,16:95:3707:10,16:381,651:-25.1252,-22.4756,-324.191,0,-273.499,-299.934 0|0:110:109,0,0:109:4191:0,0:0,0:0,-32.8123,-376.849,-32.8123,-376.849,-376.849 0|0:38:34,2,2:34:1308:2,2:77,74:0,-3.90513,-110.702,-4.19025,-105.253,-110.973 dDocent_Contig_5765 24 . T C 1924.26 . AB=0.183486;ABP=477.248;AC=4;AF=0.5;AN=8;AO=100;CIGAR=1X;DP=545;DPB=545;DPRA=0;EPP=220.158;EPPR=969.316;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=5.55112e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4024;QR=17794;RO=445;RPL=0;RPP=220.158;RPPR=969.316;RPR=100;RUN=1;SAF=100;SAP=220.158;SAR=0;SRF=445;SRP=969.316;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:142:112,30:112:4474:30:1197:-65.2609,0,-359.845 0/1:174:129,45:129:5126:45:1822:-111.806,0,-408.823 0/1:123:107,16:107:4299:16:638:-20.7256,0,-349.823 0/1:106:97,9:97:3895:9:367:-1.48587,0,-318.626 dDocent_Contig_5766 54 . T C 34360.1 . AB=0.564332;ABP=75.3722;AC=4;AF=0.5;AN=8;AO=1136;CIGAR=1X3M;DP=2013;DPB=2013;DPRA=0;EPP=2469.8;EPPR=1570.81;GTI=0;LEN=1;MEANALT=5.5;MQM=60;MQMR=59.8324;NS=4;NUMALT=2;ODDS=0;PAIRED=0.992958;PAIREDR=0.993075;PAO=0;PQA=0;PQR=0;PRO=0;QA=44522;QR=26198;RO=722;RPL=1136;RPP=2469.8;RPPR=1570.81;RPR=0;RUN=1;SAF=1136;SAP=2469.8;SAR=0;SRF=722;SRP=1570.81;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:654:276,31,327:276:10092:31,327:1217,12864:-974.995,-957.994,-1773.28,0,-724.527,-726.179 0|1:556:163,40,343:163:5893:40,343:1522,13479:-1059.48,-983.743,-1451.89,0,-355.364,-376.926 0|1:530:193,19,301:193:6963:19,301:747,11711:-904.188,-900.841,-1461.51,0,-504.936,-475.774 0|1:273:90,8,165:90:3250:8,165:291,6468:-504.742,-508.076,-770.891,0,-241.46,-215.55 dDocent_Contig_5768 29 . G A 358.431 . AB=0.182609;ABP=103.634;AC=2;AF=0.25;AN=8;AO=26;CIGAR=1X;DP=241;DPB=241;DPRA=0;EPP=59.4686;EPPR=469.877;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.414;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.986047;PAO=0;PQA=0;PQR=0;PRO=0;QA=1010;QR=8278;RO=215;RPL=0;RPP=59.4686;RPPR=469.877;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=215;SRP=469.877;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:94:91,3:91:3530:3:118:0,-17.2939,-300.661 0/1:58:44,14:44:1702:14:555:-32.8316,0,-135.957 0/1:57:50,7:50:1892:7:258:-6.40943,0,-153.349 0/0:32:30,2:30:1154:2:79:0,-2.13533,-96.6534 dDocent_Contig_5769 15 . G T 5465.56 . AB=0.340946;ABP=137.709;AC=4;AF=0.5;AN=8;AO=209;CIGAR=1X;DP=613;DPB=613;DPRA=0;EPP=398.083;EPPR=717.981;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=59.5578;NS=4;NUMALT=1;ODDS=0;PAIRED=0.952153;PAIREDR=0.954774;PAO=0;PQA=0;PQR=0;PRO=0;QA=8186;QR=15480;RO=398;RPL=0;RPP=456.848;RPPR=867.256;RPR=209;RUN=1;SAF=202;SAP=398.083;SAR=7;SRF=380;SRP=717.981;SRR=18;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:231:124,105:124:4804:105:4109:-300.459,0,-362.935 0/1:134:112,22:112:4393:22:827:-34.3882,0,-353.696 0/1:166:106,60:106:4137:60:2363:-162.855,0,-322.375 0/1:82:56,22:56:2146:22:887:-56.2519,0,-169.442 dDocent_Contig_5770 119 . G C 413.543 . AB=0.64;ABP=7.26639;AC=1;AF=0.125;AN=8;AO=16;CIGAR=1X;DP=74;DPB=74;DPRA=1.53061;EPP=37.7539;EPPR=128.956;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=555;QR=1985;RO=58;RPL=0;RPP=37.7539;RPPR=128.956;RPR=16;RUN=1;SAF=0;SAP=37.7539;SAR=16;SRF=0;SRP=128.956;SRR=58;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:9,16:9:312:16:555:-42.7523,0,-20.8904 0/0:7:7,0:7:244:0:0:0,-2.10721,-22.3001 0/0:22:22,0:22:733:0:0:0,-6.62266,-66.2819 0/0:20:20,0:20:696:0:0:0,-6.0206,-62.9642 dDocent_Contig_5771 19 . C T 1733.58 . AB=0.372093;ABP=27.452;AC=4;AF=0.5;AN=8;AO=64;CIGAR=1X;DP=172;DPB=172;DPRA=0;EPP=141.985;EPPR=237.529;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2569;QR=4271;RO=108;RPL=0;RPP=141.985;RPPR=237.529;RPR=64;RUN=1;SAF=64;SAP=141.985;SAR=0;SRF=108;SRP=237.529;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:45:33,12:33:1300:12:477:-29.7324,0,-103.71 0/1:66:37,29:37:1457:29:1168:-85.528,0,-111.503 0/1:38:21,17:21:853:17:688:-50.8091,0,-65.6415 0/1:23:17,6:17:661:6:236:-14.6862,0,-52.8865 dDocent_Contig_5775 68 . T C 299.461 . AB=0.178571;ABP=103.518;AC=3;AF=0.375;AN=8;AO=24;CIGAR=1X;DP=164;DPB=164;DPRA=0;EPP=55.1256;EPPR=307.016;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.942857;PAO=0;PQA=0;PQR=0;PRO=0;QA=908;QR=4254;RO=140;RPL=24;RPP=55.1256;RPPR=307.016;RPR=0;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=140;SRP=307.016;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:59:49,10:49:1528:10:397:-18.3266,0,-120.028 0/0:52:48,4:48:1521:4:156:0,-1.23661,-122.747 0/1:32:29,3:29:827:3:122:-1.73953,0,-65.0631 0/1:21:14,7:14:378:7:233:-14.9616,0,-27.9628 dDocent_Contig_5776 77 . C T 1459.68 . AB=0.176991;ABP=207.821;AC=1;AF=0.125;AN=8;AO=40;CIGAR=7M1X3M;DP=245;DPB=239.182;DPRA=0;EPP=89.8692;EPPR=330.903;GTI=0;LEN=1;MEANALT=3.33333;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1436;QR=5434;RO=151;RPL=40;RPP=89.8692;RPPR=330.903;RPR=0;RUN=1;SAF=40;SAP=89.8692;SAR=0;SRF=151;SRP=330.903;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:114:82,7,15,9:82:2975:7,15,9:266,527,310:-18.2142,-21.0745,-261.911,0,-221.125,-238.426,-17.7225,-238.843,-217.766,-257.95 0|1:64:29,0,3,29:29:1035:0,3,29:0,108,1052:-77.1626,-85.8924,-170.263,-77.0806,-161.451,-160.548,0,-84.3629,-75.5506,-75.633 0|0:48:30,1,15,2:30:1072:1,15,2:39,533,74:-34.3847,-40.2079,-127.305,0,-84.1736,-82.865,-37.3602,-121.551,-81.3257,-124.156 0|0:19:10,0,9,0:10:352:0,9,0:0,322,0:-23.6046,-26.6149,-55.2651,0,-29.005,-26.2957,-26.6149,-55.2651,-29.005,-55.2651 dDocent_Contig_5777 46 . T G 96171.9 . AB=0.903167;ABP=2321.24;AC=6;AF=0.75;AN=8;AO=2969;CIGAR=1X;DP=3243;DPB=3243;DPRA=0;EPP=6441.43;EPPR=587.136;GTI=0;LEN=1;MEANALT=1.5;MQM=59.9784;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.999326;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=116798;QR=10601;RO=269;RPL=1;RPP=6441.43;RPPR=587.136;RPR=2968;RUN=1;SAF=2969;SAP=6450.11;SAR=0;SRF=269;SRP=587.136;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1044:72,968:72:2825:968:38245:-3184.26,-59.1133,0 0/1:860:74,786:74:2921:786:30880:-2517.58,0,-4.10316 0/1:782:85,697:85:3385:697:27418:-2229.92,0,-69.297 1/1:557:38,518:38:1470:518:20255:-1688.83,-35.2137,0 dDocent_Contig_5778 10 . A G 593.58 . AB=0.103518;ABP=1361.59;AC=3;AF=0.375;AN=8;AO=110;CIGAR=1X;DP=1270;DPB=1270;DPRA=0;EPP=241.872;EPPR=2511.06;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=59.787;NS=4;NUMALT=1;ODDS=5.55112e-17;PAIRED=0.863636;PAIREDR=0.870996;PAO=0;PQA=0;PQR=0;PRO=0;QA=4304;QR=45779;RO=1155;RPL=0;RPP=241.872;RPPR=2511.06;RPR=110;RUN=1;SAF=110;SAP=241.872;SAR=0;SRF=1155;SRP=2511.06;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:454:412,39:412:16347:39:1530:-1.77763,0,-1333.8 0/1:414:367,45:367:14562:45:1756:-33.8257,0,-1175.1 0/0:275:268,7:268:10607:7:276:0,-57.5748,-928.749 0/1:127:108,19:108:4263:19:742:-28.8697,0,-345.409 dDocent_Contig_5780 19 . T C 4804.49 . AB=0.447721;ABP=11.865;AC=4;AF=0.5;AN=8;AO=167;CIGAR=1X1M;DP=373;DPB=373;DPRA=0;EPP=365.646;EPPR=430.79;GTI=0;LEN=1;MEANALT=1.25;MQM=59.9281;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6633;QR=7887;RO=197;RPL=0;RPP=365.646;RPPR=430.79;RPR=167;RUN=1;SAF=167;SAP=365.646;SAR=0;SRF=197;SRP=430.79;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:147:83,9,55:83:3344:9,55:357,2199:-156.098,-151.697,-424.612,0,-246.242,-259.072 0|1:101:54,0,47:54:2155:0,47:0,1876:-138.641,-154.896,-332.374,0,-177.876,-163.728 0|1:57:28,0,29:28:1128:0,29:0,1122:-84.0909,-92.5197,-185.5,0,-93.3749,-84.645 0|1:68:32,0,36:32:1260:0,36:0,1436:-109.017,-118.65,-222.291,0,-104.036,-93.1993 dDocent_Contig_5784 19 . T G 11584.6 . AB=0.542777;ABP=14.3428;AC=4;AF=0.5;AN=8;AO=387;CIGAR=1X;DP=713;DPB=713;DPRA=0;EPP=843.37;EPPR=708.739;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=15340;QR=12951;RO=325;RPL=0;RPP=843.37;RPPR=708.739;RPR=387;RUN=1;SAF=387;SAP=843.37;SAR=0;SRF=325;SRP=708.739;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:188:78,109:78:3112:109:4330:-332.961,0,-223.477 0/1:177:79,98:79:3146:98:3944:-301.652,0,-229.93 0/1:206:103,103:103:4073:103:4020:-299.778,0,-304.53 0/1:142:65,77:65:2620:77:3046:-231.471,0,-193.174 dDocent_Contig_5785 40 . G A 622.268 . AB=0.165919;ABP=219.194;AC=2;AF=0.25;AN=8;AO=42;CIGAR=1X;DP=542;DPB=542;DPRA=0.622575;EPP=94.2121;EPPR=1088.75;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1622;QR=19702;RO=500;RPL=0;RPP=94.2121;RPPR=1088.75;RPR=42;RUN=1;SAF=42;SAP=94.2121;SAR=0;SRF=500;SRP=1088.75;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:189:189,0:189:7484:0:0:0,-56.8947,-673.202 0/0:130:125,5:125:4970:5:169:0,-23.603,-431.674 0/1:116:88,28:88:3425:28:1095:-63.9233,0,-273.382 0/1:107:98,9:98:3823:9:358:-0.37227,0,-311.873 dDocent_Contig_5786 107 . N G 137.862 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=142;QR=0;RO=0;RPL=0;RPP=11.6962;RPPR=0;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0 1/1:2:0,2:0:0:2:70:-6.6474,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_5787 14 . A G 75.1907 . AB=0.178571;ABP=28.1373;AC=1;AF=0.125;AN=8;AO=14;CIGAR=1X;DP=227;DPB=227;DPRA=1.42636;EPP=33.4109;EPPR=465.534;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=0.857143;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=561;QR=8504;RO=213;RPL=0;RPP=33.4109;RPPR=465.534;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=213;SRP=465.534;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:63:60,3:60:2383:3:123:0,-7.5001,-203.153 0/0:93:87,6:87:3463:6:246:0,-5.47567,-289.185 0/0:43:43,0:43:1734:0:0:0,-12.9443,-156.276 0/1:28:23,5:23:924:5:192:-9.21804,0,-75.0357 dDocent_Contig_5790 121 . T C 31.5884 . AB=0.107143;ABP=265.758;AC=2;AF=0.25;AN=8;AO=25;CIGAR=1X;DP=403;DPB=403;DPRA=0.77686;EPP=57.2971;EPPR=821.655;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=855;QR=12717;RO=377;RPL=0;RPP=57.2971;RPPR=821.655;RPR=25;RUN=1;SAF=0;SAP=57.2971;SAR=25;SRF=0;SRP=821.655;SRR=377;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:108:95,12:95:3205:12:406:-4.50012,0,-256.329 0/0:121:121,0:121:4142:0:0:0,-36.4246,-372.977 0/0:86:82,4:82:2751:4:139:0,-13.0359,-234.977 0/1:88:79,9:79:2619:9:310:-1.7437,0,-209.465 dDocent_Contig_5791 56 . C T 152.255 . AB=0.144737;ABP=86.3263;AC=1;AF=0.125;AN=8;AO=11;CIGAR=1X;DP=180;DPB=180;DPRA=2.19231;EPP=26.8965;EPPR=369.989;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=435;QR=6697;RO=169;RPL=11;RPP=26.8965;RPPR=369.989;RPR=0;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=169;SRP=369.989;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:76:65,11:65:2571:11:435:-16.6234,0,-208.645 0/0:67:67,0:67:2659:0:0:0,-20.169,-239.435 0/0:20:20,0:20:800:0:0:0,-6.0206,-72.3152 0/0:17:17,0:17:667:0:0:0,-5.11751,-60.352 dDocent_Contig_5792 87 . C G 5717.16 . AB=0.026204;ABP=2756.17;AC=4;AF=0.5;AN=8;AO=37;CIGAR=1X3M;DP=1412;DPB=1412;DPRA=0;EPP=83.3548;EPPR=2157.11;GTI=0;LEN=1;MEANALT=6.75;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.621622;PAIREDR=0.948589;PAO=0;PQA=0;PQR=0;PRO=0;QA=1107;QR=33161;RO=992;RPL=37;RPP=83.3548;RPPR=2157.11;RPR=0;RUN=1;SAF=37;SAP=83.3548;SAR=0;SRF=992;SRP=2157.11;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:515:358,131,6:358:12008:131,6:4187,146:-229.533,0,-933.171,-325.974,-961.277,-1296.76 0|1:430:291,114,13:291:9756:114,13:3734,421:-214.039,0,-755.827,-267.676,-756.182,-1053.91 0|1:281:200,63,8:200:6649:63,8:2058,222:-106.014,0,-519.074,-148.66,-520.476,-684.267 0|1:186:143,28,10:143:4748:28,10:900,318:-29.5271,0,-375.75,-46.9714,-358.58,-428.117 dDocent_Contig_5795 38 . C T 1693.44 . AB=0.0584795;ABP=292.553;AC=0;AF=0;AN=8;AO=27;CIGAR=1M1X5M;DP=661;DPB=718;DPRA=0;EPP=61.6401;EPPR=1201.66;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1089;QR=21766;RO=552;RPL=0;RPP=61.6401;RPPR=1201.66;RPR=27;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=552;SRP=1201.66;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:162:157,0,5:157:6186:0,5:0,201:0,-47.2617,-556.159,-30.296,-539.595,-538.09 0|0:171:95,65,10:95:3739:65,10:2438,405:-171.043,0,-287.993,-166.242,-274.163,-470.809 0|0:177:170,3,3:170:6714:3,3:118,122:0,-41.4723,-593.023,-41.1058,-583.862,-592.666 0|0:151:130,11,9:130:5127:11,9:412,361:0,-5.41015,-423.915,-9.38025,-397.482,-428.509 dDocent_Contig_5796 134 . A T 3056.79 . AB=0.512712;ABP=3.34154;AC=4;AF=0.5;AN=8;AO=121;CIGAR=1X;DP=236;DPB=236;DPRA=0;EPP=265.758;EPPR=250.558;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=0.966942;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4255;QR=4043;RO=114;RPL=0;RPP=265.758;RPPR=250.558;RPR=121;RUN=1;SAF=0;SAP=265.758;SAR=121;SRF=0;SRP=250.558;SRR=114;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:78:49,28:49:1736:28:1009:-67.586,0,-132.985 0/1:51:28,23:28:982:23:799:-56.8744,0,-73.3379 0/1:54:17,37:17:607:37:1287:-99.8694,0,-38.7063 0/1:53:20,33:20:718:33:1160:-88.7475,0,-48.9938 dDocent_Contig_5797 60 . A G 158.053 . AB=0.111111;ABP=251.282;AC=1;AF=0.125;AN=8;AO=36;CIGAR=1X;DP=923;DPB=923;DPRA=0.675136;EPP=81.1833;EPPR=1924.76;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1396;QR=35063;RO=885;RPL=36;RPP=81.1833;RPPR=1924.76;RPR=0;RUN=1;SAF=36;SAP=81.1833;SAR=0;SRF=885;SRP=1924.76;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:277:277,0:277:10939:0:0:0,-83.3853,-983.807 0/0:274:274,0:274:10877:0:0:0,-82.4822,-978.225 0/1:189:166,21:166:6615:21:820:-17.5043,0,-538.466 0/0:183:168,15:168:6632:15:576:0,-2.91628,-544.428 dDocent_Contig_5798 188 . A G 448.638 . AB=0.0930233;ABP=64.872;AC=0;AF=0;AN=8;AO=11;CIGAR=1X2M2X2M2X1M1X;DP=172;DPB=172;DPRA=3.64865;EPP=26.8965;EPPR=311.359;GTI=0;LEN=1;MEANALT=2;MQM=26;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=430;QR=5502;RO=142;RPL=11;RPP=26.8965;RPPR=311.359;RPR=0;RUN=1;SAF=0;SAP=26.8965;SAR=11;SRF=0;SRP=311.359;SRR=142;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:92:85,7,0:85:3257:7,0:278,0:0,-11.1708,-276.726,-25.5875,-278.834,-292.983 0|0:31:29,0,2:29:1142:0,2:0,81:0,-8.72987,-102.668,-1.6462,-95.9876,-95.3856 0|0:43:22,4,16:22:863:4,16:152,644:-46.5627,-45.1519,-114.919,0,-63.042,-66.2658 0|0:6:6,0,0:6:240:0,0:0,0:0,-1.80618,-21.9762,-1.80618,-21.9762,-21.9762 dDocent_Contig_5799 47 . A T 525.493 . AB=0.304348;ABP=25.9524;AC=2;AF=0.25;AN=8;AO=33;CIGAR=1X;DP=261;DPB=261;DPRA=0;EPP=74.6689;EPPR=495.935;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.986784;PAO=0;PQA=0;PQR=0;PRO=0;QA=1277;QR=8464;RO=227;RPL=0;RPP=74.6689;RPPR=495.935;RPR=33;RUN=1;SAF=33;SAP=74.6689;SAR=0;SRF=227;SRP=495.935;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:139:129,10:129:4865:10:365:0,-8.65622,-404.681 0/0:53:51,2:51:1876:2:80:0,-8.36301,-161.484 0/1:57:36,20:36:1339:20:791:-54.245,0,-103.517 0/1:12:11,1:11:384:1:41:-0.482207,0,-31.2632 dDocent_Contig_5800 49 . A G 1019.72 . AB=0.212766;ABP=171.415;AC=3;AF=0.375;AN=8;AO=56;CIGAR=1X;DP=330;DPB=330;DPRA=0;EPP=124.613;EPPR=597.994;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2210;QR=10793;RO=274;RPL=0;RPP=124.613;RPPR=597.994;RPR=56;RUN=1;SAF=56;SAP=124.613;SAR=0;SRF=274;SRP=597.994;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:97:79,18:79:3097:18:714:-35.385,0,-249.607 0/1:70:63,7:63:2495:7:280:-4.49786,0,-203.623 0/0:95:89,6:89:3519:6:242:0,-6.4409,-294.607 0/1:68:43,25:43:1682:25:974:-67.4863,0,-131.132 dDocent_Contig_5801 116 . G T 1096.4 . AB=0.304598;ABP=60.7166;AC=1;AF=0.125;AN=8;AO=69;CIGAR=1X;DP=661;DPB=661;DPRA=0;EPP=152.842;EPPR=1288.52;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2349;QR=20118;RO=592;RPL=0;RPP=152.842;RPPR=1288.52;RPR=69;RUN=1;SAF=0;SAP=152.842;SAR=69;SRF=0;SRP=1288.52;SRR=592;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:229:228,1:228:7759:1:14:0,-67.5359,-697 0/1:174:121,53:121:4136:53:1816:-111.339,0,-320.068 0/0:137:129,8:129:4370:8:272:0,-16.4301,-368.69 0/0:121:114,7:114:3853:7:247:0,-13.8512,-324.414 dDocent_Contig_5802 50 . C T 158.553 . AB=0.164835;ABP=91.802;AC=1;AF=0.125;AN=8;AO=15;CIGAR=1X;DP=286;DPB=286;DPRA=1.4;EPP=35.5824;EPPR=591.479;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=496;QR=10814;RO=271;RPL=15;RPP=35.5824;RPPR=591.479;RPR=0;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=271;SRP=591.479;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:80:80,0:80:3191:0:0:0,-24.0824,-287.251 0/1:91:76,15:76:3045:15:496:-17.5542,0,-246.726 0/0:79:79,0:79:3137:0:0:0,-23.7814,-282.403 0/0:36:36,0:36:1441:0:0:0,-10.8371,-129.938 dDocent_Contig_5803 46 . A G 188.549 . AB=0.144231;ABP=117.347;AC=2;AF=0.25;AN=8;AO=19;CIGAR=1X;DP=202;DPB=202;DPRA=2.36;EPP=44.2683;EPPR=400.39;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=748;QR=7186;RO=183;RPL=0;RPP=44.2683;RPPR=400.39;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=183;SRP=400.39;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:73:69,4:69:2735:4:161:0,-7.10029,-231.392 0/1:84:76,8:76:2965:8:320:-3.88132,0,-241.673 0/1:20:13,7:13:501:7:267:-18.3701,0,-39.4077 0/0:25:25,0:25:985:0:0:0,-7.52575,-88.9519 dDocent_Contig_5804 14 . C T 138.021 . AB=0.10101;ABP=139.901;AC=1;AF=0.125;AN=8;AO=10;CIGAR=1X1M1X;DP=264;DPB=264;DPRA=3.3;EPP=24.725;EPPR=511.135;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=0.991453;PAO=0;PQA=0;PQR=0;PRO=0;QA=402;QR=9102;RO=234;RPL=0;RPP=24.725;RPPR=511.135;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=234;SRP=511.135;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:74:64,0,4,6:64:2462:0,4,6:0,153,239:-0.423903,-19.6898,-221.79,-7.14442,-209.238,-208.034,0,-202.108,-189.557,-200.302 0|1:99:89,10,0,0:89:3470:10,0,0:402,0,0:-6.7374,0,-282.563,-33.5291,-285.574,-318.703,-33.5291,-285.574,-318.703,-318.703 0|0:61:51,0,8,2:51:1996:0,8,2:0,314,81:-10.4597,-25.8122,-189.923,0,-164.101,-161.692,-19.1306,-183.243,-157.421,-182.641 0|0:30:30,0,0,0:30:1174:0,0,0:0,0,0:0,-9.0309,-105.944,-9.0309,-105.944,-105.944,-9.0309,-105.944,-105.944,-105.944 dDocent_Contig_5805 22 . C A 130.18 . AB=0.177778;ABP=43.5927;AC=1;AF=0.125;AN=8;AO=16;CIGAR=4M1X;DP=279;DPB=280.2;DPRA=1.21667;EPP=37.7539;EPPR=556.736;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=618;QR=10084;RO=255;RPL=0;RPP=37.7539;RPPR=556.736;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=255;SRP=556.736;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:70:67,0,3:67:2644:0,3:0,118:0,-20.169,-237.714,-10.0694,-228.008,-227.105 0|0:104:93,6,5:93:3671:6,5:237,189:0,-8.48381,-308.742,-12.5156,-295.061,-313.058 0|0:60:59,0,0:59:2331:0,0:0,0:0,-17.7608,-209.857,-17.7608,-209.857,-209.857 0|1:45:36,0,8:36:1438:0,8:0,311:-14.717,-25.5541,-144.003,0,-118.449,-116.041 dDocent_Contig_5806 19 . G T 10718.4 . AB=0.0301418;ABP=1084.51;AC=0;AF=0;AN=8;AO=17;CIGAR=13M1X;DP=564;DPB=601.5;DPRA=0;EPP=39.9253;EPPR=207.129;GTI=0;LEN=1;MEANALT=4.5;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=1.11022e-16;PAIRED=0;PAIREDR=0.0957447;PAO=0;PQA=0;PQR=105.333;PRO=2.66667;QA=693;QR=3695;RO=94;RPL=0;RPP=39.9253;RPPR=207.129;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=94;SRP=207.129;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:230:37,123,57,9:37:1467:123,57,9:4721,2254,368:-437.352,-60.9759,-144.709,-266.748,0,-370.35,-418.122,-151.367,-357.14,-536.172 0|0:146:25,93,26,2:25:988:93,26,2:3583,1023,82:-287.612,-0.932488,-54.2435,-212.892,0,-286.372,-288.37,-75.4704,-287.43,-369.074 0|0:118:23,68,25,1:23:893:68,25,1:2623,980,39:-214.462,-6.24926,-59.1566,-141.76,0,-207.611,-218.18,-76.4207,-211.931,-291.255 0|0:70:9,36,19,5:9:347:36,19,5:1387,722,204:-139.804,-28.6162,-46.2753,-85.3935,0,-108.167,-125.679,-40.2758,-97.053,-152.668 dDocent_Contig_5807 114 . A G 1765.36 . AB=0.304636;ABP=103.128;AC=4;AF=0.5;AN=8;AO=92;CIGAR=1X;DP=302;DPB=302;DPRA=0;EPP=202.786;EPPR=459.02;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3040;QR=7024;RO=210;RPL=0;RPP=202.786;RPPR=459.02;RPR=92;RUN=1;SAF=0;SAP=202.786;SAR=92;SRF=0;SRP=459.02;SRR=210;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:122:100,22:100:3392:22:714:-27.8377,0,-268.788 0/1:99:56,43:56:1859:43:1395:-96.0306,0,-137.783 0/1:50:35,15:35:1123:15:517:-31.8064,0,-86.3051 0/1:31:19,12:19:650:12:414:-28.2597,0,-49.4895 dDocent_Contig_5808 17 . T G 13134.4 . AB=0.079906;ABP=1307.49;AC=4;AF=0.5;AN=8;AO=68;CIGAR=2M10I7M1X2M;DP=851;DPB=1355.17;DPRA=0;EPP=150.67;EPPR=532.85;GTI=0;LEN=1;MEANALT=5.5;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2415;QR=9555;RO=244;RPL=0;RPP=150.67;RPPR=532.85;RPR=68;RUN=1;SAF=68;SAP=150.67;SAR=0;SRF=244;SRP=532.85;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:209:53,130,23:53:2079:130,23:4200,812:-322.748,0,-131.872,-272.59,-104.908,-436.658 0|1:235:61,138,30:61:2384:138,30:4639,1062:-357.421,0,-154.477,-289.298,-109.546,-476.278 0|1:227:72,141,10:72:2811:141,10:4644,363:-353.676,0,-188.681,-345.707,-201.488,-573.795 0|1:180:58,114,5:58:2281:114,5:3765,178:-286.994,0,-153.431,-289.947,-173.245,-476.094 dDocent_Contig_5809 66 . T A 1995.94 . AB=0.445122;ABP=7.30028;AC=4;AF=0.5;AN=8;AO=73;CIGAR=1X;DP=164;DPB=164;DPRA=0;EPP=161.528;EPPR=200.614;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2834;QR=3329;RO=91;RPL=73;RPP=161.528;RPPR=200.614;RPR=0;RUN=1;SAF=73;SAP=161.528;SAR=0;SRF=91;SRP=200.614;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:45:34,11:34:1267:11:432:-25.6845,0,-100.769 0/1:48:21,27:21:772:27:1038:-79.2633,0,-55.3521 0/1:39:20,19:20:714:19:738:-55.0012,0,-52.8335 0/1:32:16,16:16:576:16:626:-47.0431,0,-42.5329 dDocent_Contig_5810 26 . T A 391.356 . AB=0.172414;ABP=138.166;AC=4;AF=0.5;AN=8;AO=25;CIGAR=1X2M1X2M1X;DP=145;DPB=145;DPRA=0;EPP=57.2971;EPPR=248.387;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=980;QR=4451;RO=113;RPL=0;RPP=57.2971;RPPR=248.387;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=113;SRP=248.387;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:60:51,8,1:51:1992:8,1:314,40:-10.4651,0,-161.336,-22.5217,-160.449,-185.972 0|1:43:31,9,3:31:1225:9,3:356,123:-19.9552,0,-98.081,-19.1313,-90.6367,-119.032 0|1:24:20,3,1:20:791:3,1:117,41:-3.58172,0,-64.1807,-6.21328,-61.699,-71.0144 0|1:18:11,5,2:11:443:5,2:193,80:-12.5288,0,-35.0098,-9.24601,-29.9252,-45.168 dDocent_Contig_5811 10 . T C 259.287 . AB=0.166667;ABP=101.45;AC=4;AF=0.5;AN=8;AO=17;CIGAR=1X;DP=102;DPB=102;DPRA=0;EPP=39.9253;EPPR=187.585;GTI=0;LEN=1;MEANALT=1;MQM=59.1765;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.941176;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=689;QR=3399;RO=85;RPL=0;RPP=39.9253;RPPR=187.585;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=85;SRP=187.585;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:44:40,4:40:1600:4:159:-1.44613,0,-130.987 0/1:31:26,5:26:1046:5:204:-9.30732,0,-85.1 0/1:16:13,3:13:518:3:123:-6.64831,0,-42.148 0/1:11:6,5:6:235:5:203:-15.3417,0,-18.2068 dDocent_Contig_5812 108 . T C 342.089 . AB=0.213592;ABP=76.3976;AC=2;AF=0.25;AN=8;AO=24;CIGAR=1X;DP=169;DPB=169;DPRA=1.23148;EPP=55.1256;EPPR=317.874;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=818;QR=4916;RO=145;RPL=0;RPP=55.1256;RPPR=317.874;RPR=24;RUN=1;SAF=0;SAP=55.1256;SAR=24;SRF=0;SRP=317.874;SRR=145;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:36:36,0:36:1248:0:0:0,-10.8371,-112.625 0/1:56:43,13:43:1478:13:444:-23.4299,0,-116.459 0/1:47:38,9:38:1277:9:311:-14.1769,0,-101.079 0/0:30:28,2:28:913:2:63:0,-3.04726,-76.4866 dDocent_Contig_5813 68 . T C 1258.24 . AB=0.328671;ABP=39.4698;AC=1;AF=0.125;AN=8;AO=47;CIGAR=1X;DP=448;DPB=448;DPRA=1.40656;EPP=105.07;EPPR=873.771;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1893;QR=15983;RO=401;RPL=47;RPP=105.07;RPPR=873.771;RPR=0;RUN=1;SAF=47;SAP=105.07;SAR=0;SRF=401;SRP=873.771;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:162:162,0:162:6393:0:0:0,-48.7669,-575.106 0/1:143:96,47:96:3838:47:1893:-127.523,0,-302.379 0/0:104:104,0:104:4173:0:0:0,-31.3071,-375.526 0/0:39:39,0:39:1579:0:0:0,-11.7402,-142.34 dDocent_Contig_5815 16 . T G 58.7199 . AB=0.112903;ABP=83.705;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X;DP=143;DPB=143;DPRA=2.25;EPP=22.5536;EPPR=291.816;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.992481;PAO=0;PQA=0;PQR=0;PRO=0;QA=351;QR=5368;RO=133;RPL=0;RPP=22.5536;RPPR=291.816;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=133;SRP=291.816;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:62:55,7:55:2237:7:284:-7.26993,0,-182.82 0/0:35:35,0:35:1410:0:0:0,-10.536,-127.151 0/0:37:34,2:34:1354:2:67:0,-4.86095,-115.732 0/0:9:9,0:9:367:0:0:0,-2.70927,-33.3953 dDocent_Contig_5816 18 . C T 493.27 . AB=0.349206;ABP=15.4532;AC=3;AF=0.375;AN=8;AO=22;CIGAR=1X;DP=74;DPB=74;DPRA=1.90909;EPP=50.7827;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=807;QR=2076;RO=52;RPL=0;RPP=50.7827;RPPR=115.927;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:15,9:15:606:9:327:-22.553,0,-47.6543 0/1:20:16,4:16:637:4:147:-7.56928,0,-51.6406 0/1:19:10,9:10:396:9:333:-24.6026,0,-30.2781 0/0:11:11,0:11:437:0:0:0,-3.31133,-39.683 dDocent_Contig_5817 40 . G A 732.394 . AB=0.142857;ABP=452.815;AC=4;AF=0.5;AN=8;AO=58;CIGAR=1X;DP=406;DPB=406;DPRA=0;EPP=128.956;EPPR=758.683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=2.77556e-17;PAIRED=0.517241;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2239;QR=13626;RO=348;RPL=0;RPP=128.956;RPPR=758.683;RPR=58;RUN=1;SAF=58;SAP=128.956;SAR=0;SRF=348;SRP=758.683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:116:102,14:102:3978:14:551:-15.0131,0,-323.112 0/1:111:94,17:94:3678:17:632:-23.7897,0,-297.643 0/1:129:109,20:109:4256:20:791:-32.6775,0,-344.197 0/1:50:43,7:43:1714:7:265:-9.15702,0,-139.438 dDocent_Contig_5818 29 . T C 1631.76 . AB=0.271552;ABP=108.177;AC=3;AF=0.375;AN=8;AO=63;CIGAR=9M1X2M;DP=258;DPB=254.583;DPRA=0;EPP=139.813;EPPR=361.303;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2548;QR=6512;RO=165;RPL=0;RPP=139.813;RPPR=361.303;RPR=63;RUN=1;SAF=63;SAP=139.813;SAR=0;SRF=165;SRP=361.303;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:78:55,4,3,15:55:2182:4,3,15:155,119,610:-33.7695,-37.5954,-215.999,-40.5312,-207.408,-219.238,0,-166.885,-169.823,-175.103 0|1:85:49,0,0,30:49:1920:0,0,30:0,0,1208:-84.8081,-99.5586,-257.431,-99.5586,-257.431,-257.431,0,-157.868,-157.868,-148.837 0|1:69:40,0,10,18:40:1583:0,10,18:0,406,730:-48.1609,-60.2021,-190.478,-26.7172,-156.993,-153.983,0,-130.275,-96.7891,-124.857 0|0:26:21,0,3,0:21:827:0,3,0:0,123,0:-3.83358,-10.1552,-78.1764,0,-68.0224,-67.1193,-10.1552,-78.1764,-68.0224,-78.1764 dDocent_Contig_5819 13 . G A 1376.12 . 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T C 1744.73 . AB=0.193483;ABP=403.698;AC=4;AF=0.5;AN=8;AO=95;CIGAR=1X;DP=491;DPB=491;DPRA=0;EPP=209.3;EPPR=860.742;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=2.77556e-17;PAIRED=0.989474;PAIREDR=0.979747;PAO=0;PQA=0;PQR=0;PRO=0;QA=3650;QR=15144;RO=395;RPL=0;RPP=209.3;RPPR=860.742;RPR=95;RUN=1;SAF=95;SAP=209.3;SAR=0;SRF=395;SRP=860.742;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:167:135,32:135:5177:32:1228:-60.5407,0,-415.667 0/1:177:153,24:153:5822:24:913:-29.2002,0,-470.666 0/1:87:73,14:73:2824:14:544:-23.1165,0,-228.144 0/1:60:34,25:34:1321:25:965:-69.0131,0,-101.026 dDocent_Contig_5823 11 . T C 324.501 . AB=0.35426;ABP=44.1514;AC=3;AF=0.375;AN=8;AO=80;CIGAR=2X;DP=243;DPB=243;DPRA=0;EPP=176.728;EPPR=356.96;GTI=0;LEN=1;MEANALT=1;MQM=14.725;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3080;QR=6514;RO=163;RPL=0;RPP=176.728;RPPR=356.96;RPR=80;RUN=1;SAF=80;SAP=176.728;SAR=0;SRF=163;SRP=356.96;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:85:46,39:46:1862:39:1502:-26.6967,0,-142.19 0|1:106:78,28:78:3104:28:1079:-5.36178,0,-247.524 0|1:32:20,12:20:812:12:460:-5.78949,0,-63.762 0|0:20:19,1:19:736:1:39:0,-4.52227,-65.0642 dDocent_Contig_5824 18 . T C 1266.05 . AB=0.225962;ABP=138.686;AC=4;AF=0.5;AN=8;AO=47;CIGAR=1X4M;DP=208;DPB=206.8;DPRA=0;EPP=105.07;EPPR=300.502;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=4;NUMALT=4;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1899;QR=5426;RO=137;RPL=0;RPP=105.07;RPPR=300.502;RPR=47;RUN=1;SAF=47;SAP=105.07;SAR=0;SRF=137;SRP=300.502;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:46:33,3,4,0,6:33:1275:3,4,0,6:123,155,0,245:-10.2866,-10.0661,-113.856,-7.49492,-102.027,-110.977,-20.2206,-114.759,-112.181,-124.913,0,-94.5405,-91.9624,-104.695,-102.888 0|1:54:43,0,0,8,2:43:1713:0,0,8,2:0,0,310,82:-12.5083,-25.4526,-166.514,-25.4526,-166.514,-166.514,0,-141.049,-141.049,-138.641,-18.6806,-159.745,-159.745,-134.28,-159.143 0|1:70:37,0,0,5,28:37:1473:0,0,5,28:0,0,201,1135:-82.4603,-93.5984,-214.881,-93.5984,-214.881,-214.881,-77.0345,-198.317,-198.317,-196.812,0,-121.283,-121.283,-104.718,-112.854 0|1:38:24,3,0,0,11:24:965:3,0,0,11:120,0,0,437:-28.7478,-26.0869,-104.71,-35.9725,-105.613,-115.498,-35.9725,-105.613,-115.498,-115.498,0,-69.6403,-79.5251,-79.5251,-76.2138 dDocent_Contig_5825 53 . T G 142.452 . AB=0.352941;ABP=6.20364;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=55;DPB=55;DPRA=1.34211;EPP=16.0391;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.938776;PAO=0;PQA=0;PQR=0;PRO=0;QA=230;QR=1878;RO=49;RPL=6;RPP=16.0391;RPPR=109.412;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:12:12,0:12:454:0:0:0,-3.61236,-41.2007 0/0:20:20,0:20:786:0:0:0,-6.0206,-71.0644 0/1:17:11,6:11:417:6:230:-15.9441,0,-32.7595 0/0:6:6,0:6:221:0:0:0,-1.80618,-20.2455 dDocent_Contig_5826 1 . N G 82.2317 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=30;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=115;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:115:-8.22263,-0.90309,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_5828 81 . T G 620.312 . 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AB=0.0329218;ABP=463.479;AC=0;AF=0;AN=8;AO=8;CIGAR=1M2D12M1X;DP=387;DPB=370.312;DPRA=0;EPP=20.3821;EPPR=233.186;GTI=0;LEN=1;MEANALT=9;MQM=60;MQMR=60;NS=4;NUMALT=6;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=278;QR=4038;RO=106;RPL=0;RPP=20.3821;RPPR=233.186;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=106;SRP=233.186;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:71:14,0,0,46,0,8,0:14:532:0,0,46,0,8,0:0,0,1819,0,290,0:-145.502,-149.717,-193.344,-149.717,-193.344,-193.344,0,-43.6421,-43.6421,-29.7947,-149.717,-193.344,-193.344,-43.6421,-193.344,-126.047,-169.674,-169.674,-19.9719,-169.674,-167.266,-149.717,-193.344,-193.344,-43.6421,-193.344,-169.674,-193.344 0|0:116:33,0,7,40,9,21,0:33:1258:0,7,40,9,21,0:0,239,1544,336,741,0:-116.863,-126.797,-229.999,-107.411,-210.612,-208.505,0,-103.211,-83.8242,-91.1696,-99.2934,-202.495,-183.109,-75.7061,-199.786,-66.4836,-169.684,-150.298,-42.8962,-142.181,-163.363,-126.797,-229.999,-210.612,-103.211,-202.495,-169.684,-229.999 0|0:127:36,7,1,62,0,12,0:36:1369:7,1,62,0,12,0:253,39,2420,0,435,0:-188.096,-178.284,-288.455,-195.727,-287.356,-307.704,0,-91.6444,-109.087,-93.6297,-198.933,-290.562,-308.005,-112.294,-311.211,-163.422,-255.051,-272.494,-76.7819,-275.7,-272.088,-198.933,-290.562,-308.005,-112.294,-311.211,-275.7,-311.211 0|0:73:23,0,0,42,1,1,4:23:879:0,0,42,1,1,4:0,0,1673,39,39,143:-130.861,-137.785,-209.906,-137.785,-209.906,-209.906,0,-72.1324,-72.1324,-59.4891,-134.579,-206.701,-206.701,-68.9262,-206.4,-134.579,-206.701,-206.701,-68.9262,-203.495,-206.4,-126.129,-198.249,-198.249,-60.4764,-195.043,-195.043,-197.045 dDocent_Contig_5830 20 . T C 4669.6 . AB=0.465116;ABP=6.64625;AC=4;AF=0.5;AN=8;AO=160;CIGAR=1X;DP=344;DPB=344;DPRA=0;EPP=350.446;EPPR=402.561;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.95;PAIREDR=0.994565;PAO=0;PQA=0;PQR=0;PRO=0;QA=6411;QR=7361;RO=184;RPL=0;RPP=350.446;RPPR=402.561;RPR=160;RUN=1;SAF=160;SAP=350.446;SAR=0;SRF=184;SRP=402.561;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:99:49,50:49:1974:50:1989:-149.401,0,-148.044 0/1:102:59,43:59:2346:43:1737:-125.838,0,-180.588 0/1:83:45,38:45:1784:38:1528:-112.772,0,-135.774 0/1:60:31,29:31:1257:29:1157:-86.3471,0,-95.3328 dDocent_Contig_5831 112 . C T 80.551 . AB=0.190476;ABP=37.9607;AC=3;AF=0.375;AN=8;AO=8;CIGAR=1X;DP=73;DPB=73;DPRA=0.451613;EPP=20.3821;EPPR=141.985;GTI=0;LEN=1;MEANALT=1.33333;MQM=41;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=278;QR=2170;RO=64;RPL=0;RPP=20.3821;RPPR=141.985;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=141.985;SRR=64;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:31:31,0:31:1056:0:0:0,-9.33193,-95.3476 0/1:10:6,3:6:204:3:105:-6.49727,0,-15.6664 0/1:15:12,3:12:413:3:104:-4.93588,0,-32.9853 0/1:17:15,2:15:497:2:69:-1.27003,0,-39.9292 dDocent_Contig_5832 115 . G A 96.7432 . AB=0.195122;ABP=36.112;AC=3;AF=0.375;AN=8;AO=11;CIGAR=1X;DP=77;DPB=77;DPRA=0;EPP=26.8965;EPPR=146.327;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=378;QR=2228;RO=66;RPL=0;RPP=26.8965;RPPR=146.327;RPR=11;RUN=1;SAF=0;SAP=26.8965;SAR=11;SRF=0;SRP=146.327;SRR=66;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:18,3:18:618:3:100:-3.0089,0,-49.6212 0/0:36:33,3:33:1093:3:105:0,-1.04092,-88.8709 0/1:11:10,1:10:348:1:35:-0.187299,0,-28.3447 0/1:9:5,4:5:169:4:138:-10.0511,0,-12.8337 dDocent_Contig_5834 107 . N G 57.9432 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=61;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:61:-5.79323,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_5835 11 . G A 171.45 . AB=0.142857;ABP=80.5629;AC=1;AF=0.125;AN=8;AO=10;CIGAR=3X3M1X1M;DP=149;DPB=148.25;DPRA=0.886076;EPP=24.725;EPPR=259.315;GTI=0;LEN=1;MEANALT=3.5;MQM=57;MQMR=60;NS=4;NUMALT=4;ODDS=0;PAIRED=0;PAIREDR=0.803279;PAO=0;PQA=0;PQR=0;PRO=0;QA=393;QR=4710;RO=122;RPL=0;RPP=24.725;RPPR=267.93;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=121;SRP=259.315;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:53:52,0,0,0,0:52:2025:0,0,0,0:0,0,0,0:0,-15.6536,-182.09,-15.6536,-182.09,-182.09,-15.6536,-182.09,-182.09,-182.09,-15.6536,-182.09,-182.09,-182.09,-182.09 0|1:54:37,0,2,5,9:37:1391:0,2,5,9:0,77,191,353:-17.904,-29.0421,-143.002,-27.8792,-141.815,-141.213,-13.3597,-127.33,-126.144,-125.824,0,-113.997,-112.812,-98.3235,-111.288 0|0:26:21,2,2,0,0:21:819:2,2,0,0:28,80,0,0:0,-4.96522,-71.8509,-5.167,-71.2799,-72.0464,-6.32163,-72.453,-72.6484,-73.8252,-6.32163,-72.453,-72.6484,-73.8252,-73.8252 0|0:16:12,0,0,2,1:12:475:0,0,2,1:0,0,76,40:-2.61313,-6.22549,-45.3268,-6.22549,-45.3268,-45.3268,0,-39.0963,-39.0963,-38.4942,-2.93009,-42.0352,-42.0352,-35.8047,-41.7342 dDocent_Contig_5836 8 . A T 263.669 . AB=0.162602;ABP=124.63;AC=4;AF=0.5;AN=8;AO=20;CIGAR=1X;DP=123;DPB=123;DPRA=0;EPP=46.4397;EPPR=226.672;GTI=0;LEN=1;MEANALT=1;MQM=58.7;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.543689;PAO=0;PQA=0;PQR=0;PRO=0;QA=770;QR=3913;RO=103;RPL=0;RPP=46.4397;RPPR=226.672;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=103;SRP=226.672;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:57:47,10:47:1784:10:389:-18.1409,0,-143.658 0/1:33:27,6:27:1025:6:225:-10.6308,0,-82.624 0/1:15:13,2:13:505:2:78:-2.88802,0,-41.2837 0/1:18:16,2:16:599:2:78:-1.98493,0,-48.8245 dDocent_Contig_5838 33 . A C 79.5208 . AB=0.108333;ABP=162.903;AC=2;AF=0.25;AN=8;AO=15;CIGAR=2X;DP=269;DPB=269;DPRA=0.801688;EPP=35.5824;EPPR=554.564;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=600;QR=9962;RO=254;RPL=0;RPP=35.5824;RPPR=554.564;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=254;SRP=554.564;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:79:79,0:79:3073:0:0:0,-23.7814,-276.685 0|1:80:71,9:71:2766:9:358:-8.50032,0,-224.995 0|0:70:68,2:68:2701:2:81:0,-13.3864,-235.534 0|1:40:36,4:36:1422:4:161:-2.83407,0,-116.2 dDocent_Contig_5839 8 . A G 99.0751 . AB=0.136364;ABP=104.082;AC=4;AF=0.5;AN=8;AO=12;CIGAR=1X;DP=88;DPB=88;DPRA=0;EPP=29.068;EPPR=168.042;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=464;QR=2919;RO=76;RPL=0;RPP=29.068;RPPR=168.042;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=76;SRP=168.042;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:18,3:18:687:3:117:-4.58875,0,-55.8408 0/1:20:17,3:17:655:3:117:-4.88978,0,-53.2661 0/1:30:27,3:27:1039:3:113:-1.50807,0,-84.7879 0/1:17:14,3:14:538:3:117:-5.79287,0,-43.6471 dDocent_Contig_5840 8 . A T 177.704 . AB=0.132812;ABP=152.91;AC=1;AF=0.125;AN=8;AO=20;CIGAR=2X;DP=379;DPB=379;DPRA=1.10556;EPP=46.4397;EPPR=776.054;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=739;QR=13508;RO=356;RPL=0;RPP=46.4397;RPPR=776.054;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=356;SRP=776.054;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:118:118,0:118:4444:0:0:0,-35.5215,-400.042 0|1:128:108,17:108:4096:17:635:-19.4694,0,-330.729 0|0:71:68,3:68:2602:3:104:0,-11.6708,-224.676 0|0:62:62,0:62:2366:0:0:0,-18.6639,-213.153 dDocent_Contig_5841 15 . A C 47.9019 . AB=0.127451;ABP=125.975;AC=1;AF=0.125;AN=8;AO=22;CIGAR=1X;DP=383;DPB=383;DPRA=0;EPP=6.56362;EPPR=786.912;GTI=0;LEN=1;MEANALT=1;MQM=37.3636;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=845;QR=14446;RO=361;RPL=0;RPP=50.7827;RPPR=786.912;RPR=22;RUN=1;SAF=14;SAP=6.56362;SAR=8;SRF=361;SRP=786.912;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:114:109,5:109:4382:5:180:0,-18.7135,-378.707 0/0:119:118,1:118:4731:1:40:0,-35.1227,-424.981 0/1:102:89,13:89:3549:13:503:-6.48915,0,-288.739 0/0:48:45,3:45:1784:3:122:0,-3.52792,-149.858 dDocent_Contig_5842 9 . T C 369.658 . AB=0.164384;ABP=145.852;AC=2;AF=0.25;AN=8;AO=28;CIGAR=1X;DP=359;DPB=359;DPRA=0.497685;EPP=63.8115;EPPR=721.768;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=0.928571;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1078;QR=12675;RO=331;RPL=0;RPP=63.8115;RPPR=721.768;RPR=28;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=331;SRP=721.768;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:144:144,0:144:5513:0:0:0,-43.3483,-496.156 0/1:117:97,20:97:3692:20:773:-34.6763,0,-297.174 0/0:69:65,4:65:2503:4:149:0,-6.99755,-211.697 0/1:29:25,4:25:967:4:156:-5.68742,0,-78.6128 dDocent_Contig_5844 17 . T G 166.921 . AB=0.216216;ABP=28.8919;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=270;DPB=270;DPRA=0.476395;EPP=20.3821;EPPR=571.936;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=324;QR=10477;RO=262;RPL=0;RPP=20.3821;RPPR=571.936;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=262;SRP=571.936;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:72:72,0:72:2898:0:0:0,-21.6742,-260.916 0/0:102:102,0:102:4101:0:0:0,-30.7051,-369.05 0/0:59:59,0:59:2321:0:0:0,-17.7608,-209.055 0/1:37:29,8:29:1157:8:324:-18.3911,0,-93.2736 dDocent_Contig_5845 16 . C T 199.725 . AB=0.0248447;ABP=318.737;AC=0;AF=0;AN=8;AO=14;CIGAR=2X;DP=421;DPB=421;DPRA=0;EPP=33.4109;EPPR=797.769;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=2.77556e-17;PAIRED=0.928571;PAIREDR=0.759563;PAO=0;PQA=0;PQR=0;PRO=0;QA=559;QR=14511;RO=366;RPL=0;RPP=33.4109;RPPR=797.769;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=366;SRP=797.769;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:97:85,6,5:85:3348:6,5:233,201:0,-6.45283,-280.027,-9.01875,-265.268,-282.905 0|0:163:144,4,8:144:5728:4,8:164,302:0,-29.8081,-500.198,-18.6197,-476.662,-487.79 0|0:104:89,1,14:89:3514:1,14:41,571:-20.3165,-43.7239,-332.524,0,-285.713,-284.883 0|0:57:48,3,6:48:1921:3,6:121,215:-3.04424,-7.50446,-164.879,0,-148.263,-156.432 dDocent_Contig_5846 16 . G C 6348.65 . AB=0.728261;ABP=127.917;AC=4;AF=0.5;AN=8;AO=201;CIGAR=1X;DP=276;DPB=276;DPRA=0;EPP=439.476;EPPR=163.699;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=8052;QR=2944;RO=74;RPL=0;RPP=439.476;RPPR=163.699;RPR=201;RUN=1;SAF=201;SAP=439.476;SAR=0;SRF=74;SRP=163.699;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:67:25,42:25:980:42:1681:-131.348,0,-68.33 0/1:129:34,94:34:1369:94:3762:-299.664,0,-84.5347 0/1:46:8,38:8:313:38:1531:-124.179,0,-14.6827 0/1:34:7,27:7:282:27:1078:-87.0722,0,-15.5171 dDocent_Contig_5847 11 . G T 126.885 . AB=0.156863;ABP=55.1682;AC=1;AF=0.125;AN=8;AO=10;CIGAR=1X;DP=131;DPB=131;DPRA=1.17241;EPP=24.725;EPPR=265.758;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=405;QR=4814;RO=121;RPL=0;RPP=24.725;RPPR=265.758;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=121;SRP=265.758;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:51:43,8:43:1706:8:323:-14.0862,0,-138.409 0/0:35:34,1:34:1366:1:41:0,-6.44148,-119.103 0/0:16:15,1:15:595:1:41:0,-0.721913,-49.7901 0/0:29:29,0:29:1147:0:0:0,-8.72987,-103.512 dDocent_Contig_5848 56 . T C 560.705 . AB=0.488372;ABP=3.0608;AC=1;AF=0.125;AN=8;AO=21;CIGAR=1X;DP=183;DPB=183;DPRA=0.921429;EPP=48.6112;EPPR=354.789;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=779;QR=6387;RO=162;RPL=21;RPP=48.6112;RPPR=354.789;RPR=0;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=162;SRP=354.789;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:43:22,21:22:887:21:779:-57.4685,0,-67.1951 0/0:40:40,0:40:1590:0:0:0,-12.0412,-143.339 0/0:60:60,0:60:2332:0:0:0,-18.0618,-210.038 0/0:40:40,0:40:1578:0:0:0,-12.0412,-142.26 dDocent_Contig_5849 57 . A G 326.251 . AB=0.12931;ABP=141.46;AC=1;AF=0.125;AN=8;AO=21;CIGAR=1M5X3M4D1M1X;DP=232;DPB=222.667;DPRA=2.76;EPP=48.6112;EPPR=430.79;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=803;QR=7597;RO=197;RPL=21;RPP=48.6112;RPPR=430.79;RPR=0;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=197;SRP=430.79;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:91:85,0,6:85:3307:0,6:0,232:0,-25.5875,-297.356,-6.14624,-278.302,-276.495 0|1:68:55,3,10:55:2106:3,10:111,382:-14.7942,-22.273,-194.186,0,-163.747,-169.817 0|0:48:33,10,5:33:1268:10,5:380,189:-21.2288,0,-101.083,-15.6719,-88.6025,-118.258 0|0:25:24,1,0:24:916:1,0:40,0:0,-3.53007,-78.7513,-7.22472,-79.0523,-82.3481 dDocent_Contig_5850 98 . N T 131.041 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=5;CIGAR=1X;DP=5;DPB=5;DPRA=0;EPP=13.8677;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=126;QR=0;RO=0;RPL=5;RPP=13.8677;RPPR=0;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1:0,1:0:0:1:34:-3.39891,-0.30103,0 1/1:1:0,1:0:0:1:35:-3.49863,-0.30103,0 1/1:2:0,2:0:0:2:39:-3.70467,-0.60206,0 1/1:1:0,1:0:0:1:18:-1.79997,-0.30103,0 dDocent_Contig_5851 1 . N G 147.843 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=7.37776;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=160;QR=0;RO=0;RPL=0;RPP=11.6962;RPPR=0;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:4:0,4:0:0:4:160:-14.784,-1.20412,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_5852 25 . A T 339.107 . AB=0.179245;ABP=97.7357;AC=2;AF=0.25;AN=8;AO=22;CIGAR=1X;DP=257;DPB=257;DPRA=0.945274;EPP=50.7827;EPPR=513.306;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=882;QR=9317;RO=235;RPL=0;RPP=50.7827;RPPR=513.306;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=235;SRP=513.306;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:84:81,3:81:3200:3:121:0,-14.0063,-276.8 0/0:67:67,0:67:2677:0:0:0,-20.169,-241.057 0/1:58:44,14:44:1739:14:556:-32.9227,0,-139.274 0/1:48:43,5:43:1701:5:205:-4.38557,0,-138.867 dDocent_Contig_5853 118 . A G 197.835 . AB=0.285714;ABP=16.9698;AC=1;AF=0.125;AN=8;AO=10;CIGAR=1X;DP=159;DPB=159;DPRA=0.846774;EPP=24.725;EPPR=326.56;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=352;QR=5197;RO=149;RPL=0;RPP=24.725;RPPR=326.56;RPR=10;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=326.56;SRR=149;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:48:48,0:48:1717:0:0:0,-14.4494,-154.815 0/0:50:50,0:50:1709:0:0:0,-15.0515,-154.08 0/0:26:26,0:26:890:0:0:0,-7.82678,-80.4054 0/1:35:25,10:25:881:10:352:-21.4825,0,-69.0707 dDocent_Contig_5854 38 . T G 841.096 . AB=0.142857;ABP=468.326;AC=4;AF=0.5;AN=8;AO=60;CIGAR=1X;DP=420;DPB=420;DPRA=0;EPP=133.299;EPPR=784.74;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2403;QR=14378;RO=360;RPL=0;RPP=133.299;RPPR=784.74;RPR=60;RUN=1;SAF=60;SAP=133.299;SAR=0;SRF=360;SRP=784.74;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:187:159,28:159:6347:28:1131:-45.7803,0,-514.677 0/1:105:95,10:95:3800:10:402:-4.93193,0,-310.387 0/1:76:59,17:59:2362:17:681:-38.7416,0,-189.853 0/1:52:47,5:47:1869:5:189:-1.71986,0,-152.766 dDocent_Contig_5855 11 . C G 457.878 . AB=0.0666667;ABP=76.4061;AC=0;AF=0;AN=8;AO=3;CIGAR=1M1X1M;DP=148;DPB=157.333;DPRA=1.125;EPP=9.52472;EPPR=257.073;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=4690;RO=117;RPL=0;RPP=9.52472;RPPR=257.073;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=117;SRP=257.073;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:45:35,7,3:35:1396:7,3:270,122:-11.4294,0,-112.85,-11.8951,-104.894,-125.97 0|0:40:30,10,0:30:1205:10,0:330,0:-17.9657,0,-96.685,-26.9966,-99.6953,-126.344 0|0:40:37,3,0:37:1484:3,0:113,0:0,-1.50282,-123.268,-11.1381,-124.171,-133.428 0|0:23:15,8,0:15:605:8,0:315,0:-21.7906,0,-47.8656,-26.3061,-50.2739,-76.1833 dDocent_Contig_5856 25 . T A 28021.4 . AB=0.0315552;ABP=2539.94;AC=0;AF=0;AN=8;AO=42;CIGAR=1X2M1X3M;DP=1331;DPB=1332.29;DPRA=0;EPP=94.2121;EPPR=202.786;GTI=0;LEN=1;MEANALT=14.75;MQM=47.2619;MQMR=60;NS=4;NUMALT=5;ODDS=2.22045e-16;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1562;QR=3572;RO=92;RPL=0;RPP=94.2121;RPPR=202.786;RPR=42;RUN=1;SAF=42;SAP=94.2121;SAR=0;SRF=92;SRP=202.786;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:426:27,8,48,25,8,281:27:1070:8,48,25,8,281:231,1866,988,322,11092:-969.416,-960.333,-1046,-824.548,-895.413,-898.174,-896.239,-967.104,-831.319,-976.789,-951.006,-1021.87,-886.085,-957.776,-1036.67,-64.9212,-135.793,0,-71.692,-126.46,-68.4101 0|0:402:30,13,42,21,22,257:30:1149:13,42,21,22,257:519,1636,801,881,10006:-852.459,-819.901,-910.279,-727.809,-780.512,-809.458,-795.79,-848.493,-756.401,-883.761,-788.913,-841.616,-749.524,-817.505,-876.582,-39.3896,-92.0918,0,-67.9819,-61.1025,-56.3167 0|0:344:25,12,27,22,17,208:25:964:12,27,22,17,208:454,1050,876,670,8084:-661.305,-633.104,-708.647,-585.056,-628.484,-656.083,-596.699,-640.127,-592.079,-669.231,-613.711,-657.139,-609.091,-620.734,-687.748,-4.61911,-48.0496,0,-11.6408,-28.6537,-21.1614 0|0:159:10,9,17,3,4,98:10:389:9,17,3,4,98:358,655,116,156,3780:-326.355,-299.897,-329.157,-278.392,-280.893,-305.244,-319.838,-322.338,-300.833,-350.904,-316.543,-319.044,-297.539,-338.985,-347.308,-18.9997,-21.4998,0,-41.4419,-38.1475,-21.4692 dDocent_Contig_5858 41 . T C 5691.22 . AB=0.479899;ABP=4.40703;AC=4;AF=0.5;AN=8;AO=191;CIGAR=1X1M;DP=398;DPB=398;DPRA=0;EPP=158.64;EPPR=367.818;GTI=0;LEN=1;MEANALT=2.25;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.450262;PAIREDR=0.690476;PAO=0;PQA=0;PQR=0;PRO=0;QA=7615;QR=6667;RO=168;RPL=37;RPP=158.64;RPPR=367.818;RPR=154;RUN=1;SAF=191;SAP=417.762;SAR=0;SRF=168;SRP=367.818;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:130:85,3,42:85:3393:3,42:122,1675:-112.345,-127.869,-406.404,0,-269.367,-266.788 0|1:104:27,15,60:27:1070:15,60:585,2379:-187.67,-147.722,-231.273,0,-39.9938,-70.0065 0|1:114:43,13,58:43:1694:13,58:502,2350:-180.854,-152.58,-288.01,0,-98.1347,-121.894 0|1:50:13,6,31:13:510:6,31:216,1211:-95.6508,-81.956,-122.09,0,-24.359,-32.6301 dDocent_Contig_5859 25 . T C 1061.49 . AB=0.282051;ABP=67.375;AC=3;AF=0.375;AN=8;AO=49;CIGAR=1X;DP=256;DPB=256;DPRA=0;EPP=109.412;EPPR=452.505;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.0612245;PAIREDR=0.975845;PAO=0;PQA=0;PQR=0;PRO=0;QA=1951;QR=8198;RO=207;RPL=0;RPP=109.412;RPPR=452.505;RPR=49;RUN=1;SAF=49;SAP=109.412;SAR=0;SRF=207;SRP=452.505;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:100:95,5:95:3730:5:201:0,-11.6321,-317.248 0/1:93:71,22:71:2821:22:894:-52.7697,0,-226.004 0/1:41:25,16:25:1006:16:614:-43.2429,0,-78.4933 0/1:22:16,6:16:641:6:242:-15.5343,0,-51.401 dDocent_Contig_5860 11 . C T 63.5495 . AB=0.147059;ABP=39.7976;AC=1;AF=0.125;AN=8;AO=34;CIGAR=1X3M1X;DP=472;DPB=472;DPRA=0;EPP=76.8404;EPPR=954.115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.470588;PAIREDR=0.86758;PAO=0;PQA=0;PQR=0;PRO=0;QA=1335;QR=17112;RO=438;RPL=0;RPP=76.8404;RPPR=954.115;RPR=34;RUN=1;SAF=34;SAP=76.8404;SAR=0;SRF=438;SRP=954.115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:167:157,10:157:6161:10:392:0,-14.635,-518.702 0|0:192:177,15:177:6875:15:591:0,-4.26629,-565.029 0|0:79:75,4:75:2936:4:153:0,-9.64252,-250.239 0|1:34:29,5:29:1140:5:199:-8.05392,0,-92.6587 dDocent_Contig_5861 88 . T C 37.2089 . AB=0.135135;ABP=45.7942;AC=2;AF=0.25;AN=8;AO=5;CIGAR=1X;DP=99;DPB=99;DPRA=0.596774;EPP=13.8677;EPPR=207.129;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=177;QR=3391;RO=94;RPL=5;RPP=13.8677;RPPR=207.129;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=94;SRP=207.129;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:48:48,0:48:1750:0:0:0,-14.4494,-157.777 0/0:14:14,0:14:515:0:0:0,-4.21442,-46.6913 0/1:25:21,4:21:720:4:140:-5.41846,0,-57.584 0/1:12:11,1:11:406:1:37:-0.0854694,0,-33.2754 dDocent_Contig_5862 15 . A G 105.096 . AB=0.133333;ABP=90.593;AC=2;AF=0.25;AN=8;AO=10;CIGAR=1X;DP=185;DPB=185;DPRA=0.681818;EPP=24.725;EPPR=383.018;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=397;QR=6989;RO=175;RPL=0;RPP=24.725;RPPR=383.018;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=175;SRP=383.018;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:46:46,0:46:1833:0:0:0,-13.8474,-165.177 0/0:64:64,0:64:2582:0:0:0,-19.2659,-232.505 0/1:53:47,6:47:1876:6:236:-5.65532,0,-153.095 0/1:22:18,4:18:698:4:161:-8.25224,0,-56.5186 dDocent_Contig_5863 61 . A T 641.228 . AB=0.218978;ABP=96.9859;AC=2;AF=0.25;AN=8;AO=30;CIGAR=1X;DP=224;DPB=224;DPRA=1.57471;EPP=68.1545;EPPR=424.276;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1201;QR=7680;RO=194;RPL=30;RPP=68.1545;RPPR=424.276;RPR=0;RUN=1;SAF=30;SAP=68.1545;SAR=0;SRF=194;SRP=424.276;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:73:60,13:60:2396:13:526:-25.7124,0,-193.819 0/1:64:47,17:47:1873:17:675:-41.8083,0,-149.515 0/0:44:44,0:44:1707:0:0:0,-13.2453,-153.849 0/0:43:43,0:43:1704:0:0:0,-12.9443,-153.585 dDocent_Contig_5864 199 . G A 68.0166 . AB=0.177778;ABP=43.5927;AC=2;AF=0.25;AN=8;AO=8;CIGAR=1X;DP=66;DPB=66;DPRA=2.14286;EPP=20.3821;EPPR=128.956;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=257;QR=2240;RO=58;RPL=8;RPP=20.3821;RPPR=128.956;RPR=0;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=128.956;SRR=58;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:7:7,0:7:270:0:0:0,-2.10721,-24.6655 0/1:31:26,5:26:1005:5:178:-7.03541,0,-81.4282 0/1:14:11,3:11:424:3:79:-3.15667,0,-34.2996 0/0:14:14,0:14:541:0:0:0,-4.21442,-49.0357 dDocent_Contig_5865 40 . T C 1945.71 . AB=0.214118;ABP=304.712;AC=4;AF=0.5;AN=8;AO=91;CIGAR=1X;DP=425;DPB=425;DPRA=0;EPP=200.614;EPPR=728.282;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3652;QR=13288;RO=334;RPL=0;RPP=200.614;RPPR=728.282;RPR=91;RUN=1;SAF=91;SAP=200.614;SAR=0;SRF=334;SRP=728.282;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:173:117,56:117:4692:56:2239:-149.603,0,-370.114 0/1:117:104,13:104:4162:13:532:-13.0056,0,-339.334 0/1:69:58,11:58:2289:11:446:-19.7249,0,-185.408 0/1:66:55,11:55:2145:11:435:-19.636,0,-173.37 dDocent_Contig_5866 40 . C T 183.712 . AB=0.179104;ABP=62.9365;AC=2;AF=0.25;AN=8;AO=16;CIGAR=1X;DP=151;DPB=151;DPRA=0;EPP=37.7539;EPPR=296.159;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=619;QR=5357;RO=135;RPL=0;RPP=37.7539;RPPR=296.159;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=135;SRP=296.159;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:44:39,5:39:1534:5:204:-5.49871,0,-125.062 0/0:60:57,3:57:2270:3:122:0,-6.68931,-193.098 0/0:24:23,1:23:927:1:39:0,-3.32816,-79.8376 0/1:23:16,7:16:626:7:254:-16.2704,0,-49.7493 dDocent_Contig_5867 50 . G C 974.069 . AB=0.21659;ABP=154.403;AC=3;AF=0.375;AN=8;AO=50;CIGAR=1X;DP=310;DPB=310;DPRA=0;EPP=111.584;EPPR=567.593;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1963;QR=10361;RO=260;RPL=50;RPP=111.584;RPPR=567.593;RPR=0;RUN=1;SAF=50;SAP=111.584;SAR=0;SRF=260;SRP=567.593;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:93:79,14:79:3134:14:566:-23.2868,0,-254.133 0/0:93:90,3:90:3579:3:106:0,-18.1117,-312.27 0/1:77:63,14:63:2514:14:561:-27.6535,0,-203.226 0/1:47:28,19:28:1134:19:730:-51.8646,0,-88.1914 dDocent_Contig_5868 23 . T C 432.897 . AB=0.184;ABP=111.428;AC=2;AF=0.25;AN=8;AO=27;CIGAR=1X;DP=235;DPB=235;DPRA=0;EPP=61.6401;EPPR=454.677;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1093;QR=8401;RO=208;RPL=0;RPP=61.6401;RPPR=454.677;RPR=27;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=208;SRP=454.677;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:57:43,14:43:1742:14:565:-34.0333,0,-139.833 0/0:87:84,3:84:3390:3:123:0,-14.7248,-293.669 0/1:68:59,9:59:2382:9:364:-12.6543,0,-194.053 0/0:23:22,1:22:887:1:41:0,-2.82912,-76.0408 dDocent_Contig_5869 17 . C T 236.566 . AB=0.23913;ABP=30.2009;AC=2;AF=0.25;AN=8;AO=11;CIGAR=1X;DP=77;DPB=77;DPRA=1.48387;EPP=26.8965;EPPR=146.327;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=446;QR=2644;RO=66;RPL=0;RPP=26.8965;RPPR=146.327;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=66;SRP=146.327;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:16,3:16:643:3:122:-5.65292,0,-52.4853 0/1:27:19,8:19:756:8:324:-21.4016,0,-60.2325 0/0:11:11,0:11:428:0:0:0,-3.31133,-38.8666 0/0:20:20,0:20:817:0:0:0,-6.0206,-73.8432 dDocent_Contig_5870 45 . G A 2600.18 . AB=0.55414;ABP=7.00747;AC=3;AF=0.375;AN=8;AO=90;CIGAR=1X;DP=202;DPB=202;DPRA=0;EPP=198.443;EPPR=246.215;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.977778;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3587;QR=4479;RO=112;RPL=0;RPP=198.443;RPPR=246.215;RPR=90;RUN=1;SAF=90;SAP=198.443;SAR=0;SRF=112;SRP=246.215;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:79:21,58:21:817:58:2309:-184.183,0,-50.0492 0/1:36:17,19:17:693:19:767:-58.513,0,-51.8604 0/0:45:42,3:42:1672:3:122:0,-2.17386,-139.333 0/1:42:32,10:32:1297:10:389:-22.7202,0,-104.349 dDocent_Contig_5871 21 . A G 2862.89 . AB=0.193548;ABP=306.456;AC=1;AF=0.125;AN=8;AO=72;CIGAR=2M1X5M;DP=372;DPB=335.625;DPRA=0;EPP=159.356;EPPR=443.819;GTI=0;LEN=1;MEANALT=2.25;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=5.55112e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2810;QR=8029;RO=203;RPL=0;RPP=159.356;RPPR=443.819;RPR=72;RUN=1;SAF=72;SAP=159.356;SAR=0;SRF=203;SRP=443.819;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:137:70,25,42:70:2778:25,42:940,1630:-112.837,-56.9215,-278.084,0,-151.712,-216.055 0|0:87:57,29,1:57:2260:29,1:1114,41:-74.2394,0,-177.283,-88.0131,-182.628,-273.746 0|0:98:48,31,19:48:1879:31,19:1143,751:-78.9699,0,-145.155,-31.6106,-92.6867,-180.394 0|0:50:28,11,10:28:1112:11,10:438,388:-27.6407,0,-88.24,-4.19943,-59.6786,-92.7339 dDocent_Contig_5873 98 . N G 157.412 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=5;CIGAR=1X;DP=5;DPB=5;DPRA=0;EPP=13.8677;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=1.69407e-21;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=159;QR=0;RO=0;RPL=5;RPP=13.8677;RPPR=0;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:95:-8.86398,-0.90309,0 1/1:1:0,1:0:0:1:35:-3.49863,-0.30103,0 ./.:.:.:.:.:.:.:. 1/1:1:0,1:0:0:1:29:-2.89966,-0.30103,0 dDocent_Contig_5875 15 . C A 636.76 . AB=0.0819672;ABP=95.6005;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X2M4D1M;DP=194;DPB=173.875;DPRA=7.625;EPP=13.8677;EPPR=330.903;GTI=0;LEN=1;MEANALT=3;MQM=53.8;MQMR=59.894;NS=4;NUMALT=2;ODDS=1.38778e-17;PAIRED=1;PAIREDR=0.980132;PAO=0;PQA=0;PQR=0;PRO=0;QA=197;QR=5964;RO=151;RPL=0;RPP=13.8677;RPPR=330.903;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=151;SRP=330.903;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:59:38,0,20:38:1496:0,20:0,759:-51.045,-62.4841,-185.561,0,-123.345,-117.324 0|0:66:55,0,10:55:2173:0,10:0,393:-16.0153,-32.5719,-211.404,0,-179.089,-176.078 0|1:61:50,5,3:50:1975:5,3:197,119:-1.10837,0,-160.886,-6.36333,-152.598,-167.85 0|0:8:8,0,0:8:320:0,0:0,0:0,-2.40824,-29.1683,-2.40824,-29.1683,-29.1683 dDocent_Contig_5876 1 . N G 183.797 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=5;CIGAR=1X;DP=5;DPB=5;DPRA=0;EPP=13.8677;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=8.07091;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=200;QR=0;RO=0;RPL=0;RPP=13.8677;RPPR=0;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:5:0,5:0:0:5:200:-18.3795,-1.50515,0 dDocent_Contig_5877 84 . T G 1786.2 . AB=0.490446;ABP=3.13478;AC=4;AF=0.5;AN=8;AO=77;CIGAR=1X2M1X;DP=157;DPB=157;DPRA=0;EPP=170.214;EPPR=172.385;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2576;QR=2746;RO=78;RPL=77;RPP=170.214;RPPR=172.385;RPR=0;RUN=1;SAF=77;SAP=170.214;SAR=0;SRF=0;SRP=172.385;SRR=78;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:52:26,26:26:922:26:878:-63.678,0,-67.6445 0|1:44:22,22:22:765:22:726:-52.4055,0,-55.9246 0|1:42:20,21:20:715:21:712:-51.9726,0,-52.252 0|1:19:10,8:10:344:8:260:-17.9613,0,-25.5328 dDocent_Contig_5878 12 . C A 11748.7 . AB=0.458286;ABP=16.2352;AC=4;AF=0.5;AN=8;AO=401;CIGAR=1X;DP=875;DPB=875;DPRA=0;EPP=873.771;EPPR=1027.95;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=5.55112e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=16060;QR=18648;RO=472;RPL=0;RPP=873.771;RPPR=1027.95;RPR=401;RUN=1;SAF=401;SAP=873.771;SAR=0;SRF=472;SRP=1027.95;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:236:122,114:122:4794:114:4550:-338.382,0,-360.332 0/1:263:160,101:160:6367:101:4066:-287.085,0,-493.95 0/1:236:119,117:119:4676:117:4697:-351.594,0,-349.734 0/1:140:71,69:71:2811:69:2747:-205.203,0,-210.967 dDocent_Contig_5879 7 . A G 1143.22 . AB=0.273913;ABP=105.126;AC=2;AF=0.25;AN=8;AO=66;CIGAR=1X;DP=344;DPB=344;DPRA=0;EPP=146.327;EPPR=604.508;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2179;QR=10630;RO=277;RPL=0;RPP=146.327;RPPR=604.508;RPR=66;RUN=1;SAF=66;SAP=146.327;SAR=0;SRF=277;SRP=604.508;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:113:85,28:85:3290:28:922:-49.2503,0,-262.22 0/1:117:81,35:81:3095:35:1147:-68.4698,0,-243.68 0/0:76:74,2:74:2824:2:71:0,-16.1372,-247.597 0/0:38:37,1:37:1421:1:39:0,-7.54258,-124.272 dDocent_Contig_5880 137 . T A 594.487 . AB=0.45283;ABP=4.03458;AC=2;AF=0.25;AN=8;AO=24;CIGAR=1X;DP=110;DPB=110;DPRA=0.929825;EPP=55.1256;EPPR=189.757;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=868;QR=3021;RO=86;RPL=0;RPP=55.1256;RPPR=189.757;RPR=24;RUN=1;SAF=0;SAP=55.1256;SAR=24;SRF=0;SRP=189.757;SRR=86;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:22,7:22:782:7:251:-14.2077,0,-61.9719 0/0:23:23,0:23:797:0:0:0,-6.92369,-72.045 0/1:24:7,17:7:250:17:617:-48.639,0,-15.6206 0/0:34:34,0:34:1192:0:0:0,-10.235,-107.575 dDocent_Contig_5881 7 . A G 403.239 . AB=0.227941;ABP=90.444;AC=3;AF=0.375;AN=8;AO=37;CIGAR=1X;DP=207;DPB=207;DPRA=0;EPP=83.3548;EPPR=365.646;GTI=0;LEN=1;MEANALT=1.5;MQM=38.5946;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.837838;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1239;QR=6351;RO=167;RPL=0;RPP=83.3548;RPPR=365.646;RPR=37;RUN=1;SAF=37;SAP=83.3548;SAR=0;SRF=167;SRP=365.646;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:82:61,19:61:2326:19:598:-25.6531,0,-185.319 0/0:71:65,6:65:2491:6:206:0,-10.0378,-213.056 0/1:26:22,4:22:817:4:150:-5.1603,0,-66.0202 0/1:28:19,8:19:717:8:285:-14.9084,0,-56.5493 dDocent_Contig_5882 11 . C A 1054.82 . AB=0.226415;ABP=140.837;AC=3;AF=0.375;AN=8;AO=49;CIGAR=1X;DP=247;DPB=247;DPRA=0;EPP=109.412;EPPR=432.962;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.994949;PAO=0;PQA=0;PQR=0;PRO=0;QA=1971;QR=8013;RO=198;RPL=0;RPP=109.412;RPPR=432.962;RPR=49;RUN=1;SAF=49;SAP=109.412;SAR=0;SRF=198;SRP=432.962;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:71:50,21:50:2015:21:850:-55.4387,0,-160.157 0/1:92:74,18:74:2995:18:712:-36.7063,0,-241.929 0/1:49:40,9:40:1624:9:368:-18.7349,0,-131.632 0/0:35:34,1:34:1379:1:41:0,-6.44148,-120.268 dDocent_Contig_5883 33 . C T 234.109 . AB=0.191176;ABP=59.3408;AC=2;AF=0.25;AN=8;AO=14;CIGAR=1X;DP=132;DPB=132;DPRA=2.11111;EPP=33.4109;EPPR=259.244;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.974576;PAO=0;PQA=0;PQR=0;PRO=0;QA=558;QR=4735;RO=118;RPL=0;RPP=33.4109;RPPR=259.244;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=118;SRP=259.244;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:37:28,9:28:1110:9:354:-21.0823,0,-89.0367 0/1:31:27,4:27:1088:4:163:-5.7265,0,-88.8749 0/0:46:45,1:45:1801:1:41:0,-9.75281,-158.201 0/0:18:18,0:18:736:0:0:0,-5.41854,-66.5623 dDocent_Contig_5884 42 . A T 410.315 . AB=0.140187;ABP=243.658;AC=2;AF=0.25;AN=8;AO=31;CIGAR=1X;DP=414;DPB=414;DPRA=0.625;EPP=70.3259;EPPR=834.684;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1242;QR=15293;RO=383;RPL=0;RPP=70.3259;RPPR=834.684;RPR=31;RUN=1;SAF=31;SAP=70.3259;SAR=0;SRF=383;SRP=834.684;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:144:144,0:144:5750:0:0:0,-43.3483,-517.299 0/1:112:93,19:93:3680:19:769:-35.8152,0,-297.499 0/1:102:91,11:91:3647:11:433:-8.61419,0,-297.54 0/0:56:55,1:55:2216:1:40:0,-12.862,-195.611 dDocent_Contig_5885 80 . G C 955.416 . AB=0.310811;ABP=49.022;AC=4;AF=0.5;AN=8;AO=46;CIGAR=1X;DP=148;DPB=148;DPRA=0;EPP=102.898;EPPR=224.5;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1617;QR=3517;RO=102;RPL=46;RPP=102.898;RPPR=224.5;RPR=0;RUN=1;SAF=46;SAP=102.898;SAR=0;SRF=102;SRP=224.5;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:57:35,22:35:1217:22:777:-53.0935,0,-92.6773 0/1:59:41,18:41:1420:18:625:-38.8115,0,-110.337 0/1:18:16,2:16:552:2:72:-1.4181,0,-44.5883 0/1:14:10,4:10:328:4:143:-9.00703,0,-25.623 dDocent_Contig_5886 116 . T C 200.625 . AB=0.179775;ABP=82.2812;AC=2;AF=0.25;AN=8;AO=22;CIGAR=1X;DP=296;DPB=296;DPRA=0.495798;EPP=50.7827;EPPR=597.994;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=758;QR=9411;RO=274;RPL=0;RPP=50.7827;RPPR=597.994;RPR=22;RUN=1;SAF=0;SAP=50.7827;SAR=22;SRF=0;SRP=597.994;SRR=274;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:119:119,0:119:4087:0:0:0,-35.8226,-368.038 0/0:88:82,6:82:2801:6:208:0,-7.43099,-233.279 0/1:62:49,13:49:1688:13:445:-21.7136,0,-133.545 0/1:27:24,3:24:835:3:105:-1.66835,0,-67.3414 dDocent_Contig_5888 62 . A G 571.821 . AB=0.365079;ABP=12.9715;AC=3;AF=0.375;AN=8;AO=24;CIGAR=1X;DP=80;DPB=80;DPRA=0;EPP=55.1256;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=934;QR=2174;RO=56;RPL=24;RPP=55.1256;RPPR=124.613;RPR=0;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:15,3:15:598:3:120:-5.76915,0,-48.7377 0/1:28:19,9:19:718:9:355:-23.8796,0,-56.4992 0/0:17:16,1:16:627:1:40:0,-1.12183,-52.7682 0/1:17:6,11:6:231:11:419:-32.9312,0,-16.0377 dDocent_Contig_5889 11 . A G 1293.2 . AB=0.270936;ABP=95.5279;AC=4;AF=0.5;AN=8;AO=55;CIGAR=1X;DP=203;DPB=203;DPRA=0;EPP=122.441;EPPR=307.251;GTI=0;LEN=1;MEANALT=1;MQM=59.5636;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=0.563636;PAIREDR=0.871622;PAO=0;PQA=0;PQR=0;PRO=0;QA=2189;QR=5948;RO=148;RPL=0;RPP=122.441;RPPR=324.388;RPR=55;RUN=1;SAF=55;SAP=122.441;SAR=0;SRF=146;SRP=307.251;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:85:72,13:72:2920:13:512:-20.8356,0,-237.295 0/1:33:23,10:23:935:10:406:-26.966,0,-74.517 0/1:53:28,25:28:1094:25:993:-73.1603,0,-82.7849 0/1:32:25,7:25:999:7:278:-15.7562,0,-80.5716 dDocent_Contig_5890 14 . T G 1043.32 . AB=0.13986;ABP=164.109;AC=1;AF=0.125;AN=8;AO=20;CIGAR=1X3M1I1X7M1X2M;DP=185;DPB=189.667;DPRA=0;EPP=46.4397;EPPR=246.215;GTI=0;LEN=1;MEANALT=3.66667;MQM=35;MQMR=60;NS=4;NUMALT=2;ODDS=2.77556e-17;PAIRED=0;PAIREDR=0.901786;PAO=0;PQA=0;PQR=0;PRO=0;QA=700;QR=4397;RO=112;RPL=0;RPP=46.4397;RPPR=246.215;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=112;SRP=246.215;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:79:39,10,26:39:1520:10,26:350,1024:-72.5435,-58.5187,-180.441,0,-99.2115,-117.154 0|0:42:32,0,9:32:1268:0,9:0,348:-19.1165,-28.7495,-133.142,0,-104.566,-101.856 0|0:47:28,8,8:28:1100:8,8:280,321:-18.0517,-5.88196,-93.9539,0,-69.9113,-88.1142 0|1:17:13,2,1:13:509:2,1:70,40:-1.2279,0,-41.2874,-1.82463,-38.5933,-43.4404 dDocent_Contig_5891 40 . T C 5162.28 . AB=0.556634;ABP=11.6189;AC=4;AF=0.5;AN=8;AO=172;CIGAR=1X;DP=309;DPB=309;DPRA=0;EPP=350.9;EPPR=300.502;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.936047;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6842;QR=5414;RO=137;RPL=0;RPP=376.504;RPPR=300.502;RPR=172;RUN=1;SAF=169;SAP=350.9;SAR=3;SRF=137;SRP=300.502;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:95:57,38:57:2249:38:1522:-108.622,0,-173.98 0/1:79:42,37:42:1657:37:1421:-104.349,0,-125.583 0/1:94:25,69:25:980:69:2781:-222.093,0,-60.1965 0/1:41:13,28:13:528:28:1118:-88.5622,0,-35.5247 dDocent_Contig_5892 18 . A G 355.664 . AB=0.188679;ABP=92.2455;AC=3;AF=0.375;AN=8;AO=20;CIGAR=1X;DP=135;DPB=135;DPRA=1.21839;EPP=46.4397;EPPR=252.73;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=797;QR=4522;RO=115;RPL=0;RPP=46.4397;RPPR=252.73;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=115;SRP=252.73;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:17,12:17:686:12:474:-34.2782,0,-53.3401 0/1:52:47,5:47:1812:5:200:-2.72598,0,-147.624 0/0:29:29,0:29:1153:0:0:0,-8.72987,-104.049 0/1:25:22,3:22:871:3:123:-3.93904,0,-71.1718 dDocent_Contig_5893 36 . T C 1746.19 . AB=0.366667;ABP=30.8051;AC=4;AF=0.5;AN=8;AO=66;CIGAR=1X;DP=180;DPB=180;DPRA=0;EPP=146.327;EPPR=250.558;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2610;QR=4117;RO=114;RPL=0;RPP=146.327;RPPR=250.558;RPR=66;RUN=1;SAF=66;SAP=146.327;SAR=0;SRF=114;SRP=250.558;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:39:26,13:26:934:13:529:-36.2161,0,-72.6297 0/1:70:44,26:44:1568:26:1016:-70.654,0,-120.325 0/1:46:31,15:31:1147:15:609:-41.3008,0,-89.683 0/1:25:13,12:13:468:12:456:-33.8465,0,-34.9294 dDocent_Contig_5894 15 . C T 211.473 . AB=0.126667;ABP=184.603;AC=1;AF=0.125;AN=8;AO=24;CIGAR=1X;DP=484;DPB=484;DPRA=1.39604;EPP=55.1256;EPPR=1001.89;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=954;QR=18444;RO=460;RPL=0;RPP=55.1256;RPPR=1001.89;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=460;SRP=1001.89;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:109:109,0:109:4358:0:0:0,-32.8123,-392.161 0/1:150:131,19:131:5270:19:752:-22.8462,0,-428.981 0/0:132:127,5:127:5101:5:202:0,-21.1745,-440.385 0/0:93:93,0:93:3715:0:0:0,-27.9958,-334.347 dDocent_Contig_5895 34 . G A 3481.21 . AB=0.489879;ABP=3.23008;AC=4;AF=0.5;AN=8;AO=121;CIGAR=1X;DP=247;DPB=247;DPRA=0;EPP=265.758;EPPR=276.616;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4764;QR=4981;RO=126;RPL=0;RPP=265.758;RPPR=276.616;RPR=121;RUN=1;SAF=121;SAP=265.758;SAR=0;SRF=126;SRP=276.616;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:57:25,32:25:1005:32:1289:-99.1165,0,-73.5867 0/1:76:37,39:37:1479:39:1513:-113.537,0,-110.478 0/1:77:32,45:32:1240:45:1759:-135.351,0,-88.6918 0/1:37:32,5:32:1257:5:203:-7.51495,0,-102.263 dDocent_Contig_5897 29 . T C 172.076 . AB=0.151163;ABP=93.9091;AC=3;AF=0.375;AN=8;AO=13;CIGAR=1X;DP=108;DPB=108;DPRA=1.30303;EPP=31.2394;EPPR=209.3;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.936842;PAO=0;PQA=0;PQR=0;PRO=0;QA=526;QR=3702;RO=95;RPL=0;RPP=31.2394;RPPR=209.3;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=95;SRP=209.3;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:34:30,4:30:1186:4:158:-4.36434,0,-96.7842 0/0:22:22,0:22:890:0:0:0,-6.62266,-80.4083 0/1:34:28,6:28:1085:6:245:-12.1945,0,-87.6927 0/1:18:15,3:15:541:3:123:-6.04625,0,-43.5834 dDocent_Contig_5898 19 . G T 76.886 . AB=0.119403;ABP=87.3088;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=274;DPB=274;DPRA=0.971014;EPP=20.3821;EPPR=580.622;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=321;QR=10666;RO=266;RPL=0;RPP=20.3821;RPPR=580.622;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=266;SRP=580.622;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:67:59,8:59:2365:8:321:-9.08654,0,-192.824 0/0:105:105,0:105:4190:0:0:0,-31.6081,-377.066 0/0:60:60,0:60:2420:0:0:0,-18.0618,-217.941 0/0:42:42,0:42:1691:0:0:0,-12.6433,-152.41 dDocent_Contig_5899 15 . C T 3586.9 . AB=0.390625;ABP=36.261;AC=4;AF=0.5;AN=8;AO=125;CIGAR=1M1X;DP=320;DPB=331.5;DPRA=0;EPP=274.444;EPPR=376.504;GTI=0;LEN=1;MEANALT=1.75;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=2.77556e-17;PAIRED=0.984;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5027;QR=6872;RO=172;RPL=0;RPP=274.444;RPPR=376.504;RPR=125;RUN=1;SAF=125;SAP=274.444;SAR=0;SRF=172;SRP=376.504;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:108:53,13,42:53:2092:13,42:510,1688:-123.15,-97.1919,-265.399,0,-130.212,-159.483 0|1:109:62,2,45:62:2495:2,45:82,1790:-128.87,-144.104,-349.127,0,-202.363,-192.248 0|1:74:43,0,31:43:1725:0,31:0,1263:-91.6569,-104.601,-246.722,0,-142.525,-133.193 0|1:29:14,8,7:14:560:8,7:323,286:-22.4103,0,-43.7143,-3.0229,-22.5202,-47.0415 dDocent_Contig_5900 27 . G C 1121.76 . AB=0.312057;ABP=46.2703;AC=2;AF=0.25;AN=8;AO=46;CIGAR=1X;DP=189;DPB=189;DPRA=2.81667;EPP=102.898;EPPR=313.531;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1831;QR=5628;RO=143;RPL=0;RPP=102.898;RPPR=313.531;RPR=46;RUN=1;SAF=46;SAP=102.898;SAR=0;SRF=143;SRP=313.531;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:86:65,21:65:2572:21:819:-48.128,0,-205.731 0/1:55:32,23:32:1235:23:930:-67.4461,0,-94.8689 0/0:28:26,2:26:1024:2:82:0,-0.649162,-84.6706 0/0:20:20,0:20:797:0:0:0,-6.0206,-72.0483 dDocent_Contig_5901 7 . A C 120.542 . AB=0.100346;ABP=403.951;AC=1;AF=0.125;AN=8;AO=83;CIGAR=1X;DP=1101;DPB=1101;DPRA=0;EPP=183.243;EPPR=2211.4;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=59.7906;NS=4;NUMALT=1;ODDS=0;PAIRED=0.506024;PAIREDR=0.519174;PAO=0;PQA=0;PQR=0;PRO=0;QA=3183;QR=38958;RO=1017;RPL=0;RPP=183.243;RPPR=2211.4;RPR=83;RUN=1;SAF=83;SAP=183.243;SAR=0;SRF=1017;SRP=2211.4;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:289:259,29:259:9977:29:1112:-13.4521,0,-810.294 0/0:322:297,25:297:11395:25:966:0,-9.67798,-936.476 0/0:325:303,22:303:11570:22:833:0,-22.5444,-965.481 0/0:165:158,7:158:6016:7:272:0,-24.8227,-516.503 dDocent_Contig_5902 33 . A T 47.2271 . AB=0.119048;ABP=55.9529;AC=2;AF=0.25;AN=8;AO=9;CIGAR=1X;DP=130;DPB=130;DPRA=1.2716;EPP=22.5536;EPPR=265.758;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=369;QR=4826;RO=121;RPL=0;RPP=22.5536;RPPR=265.758;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=121;SRP=265.758;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:61:57,4:57:2301:4:164:0,-3.21293,-192.092 0/0:27:27,0:27:1050:0:0:0,-8.12781,-94.7797 0/1:29:25,4:25:996:4:164:-6.42003,0,-81.2036 0/1:13:12,1:12:479:1:41:-0.181177,0,-39.5478 dDocent_Contig_5903 15 . G T 1445.8 . AB=0.26087;ABP=25.858;AC=2;AF=0.25;AN=8;AO=12;CIGAR=5M1X2M;DP=143;DPB=148.75;DPRA=0;EPP=29.068;EPPR=168.042;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=466;QR=3005;RO=76;RPL=0;RPP=29.068;RPPR=168.042;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=76;SRP=168.042;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:28:6,4,9,9:6:241:4,9,9:161,353,359:-36.9172,-25.453,-44.1099,-9.70312,-16.2935,-26.8539,-9.15731,-15.7483,0,-26.3095 0|0:59:26,33,0,0:26:1020:33,0,0:1294,0,0:-98.9669,0,-74.3431,-106.794,-84.277,-190.679,-106.794,-84.277,-190.679,-190.679 0|0:38:32,6,0,0:32:1266:6,0,0:239,0,0:-10.4441,0,-102.778,-20.077,-104.585,-124.264,-20.077,-104.585,-124.264,-124.264 0|1:18:12,2,3,0:12:478:2,3,0:71,113,0:-5.64981,-3.48775,-42.2597,0,-33.607,-38.4817,-9.26217,-42.8618,-39.3848,-48.641 dDocent_Contig_5904 45 . C A 1006.05 . AB=0.325397;ABP=36.3751;AC=4;AF=0.5;AN=8;AO=41;CIGAR=1X;DP=126;DPB=126;DPRA=0;EPP=92.0407;EPPR=187.585;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.988235;PAO=0;PQA=0;PQR=0;PRO=0;QA=1606;QR=3387;RO=85;RPL=0;RPP=92.0407;RPPR=187.585;RPR=41;RUN=1;SAF=41;SAP=92.0407;SAR=0;SRF=85;SRP=187.585;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:42:31,11:31:1218:11:436:-26.9503,0,-97.2472 0/1:48:32,16:32:1285:16:632:-42.7639,0,-101.465 0/1:16:11,5:11:437:5:179:-11.6364,0,-34.8653 0/1:20:11,9:11:447:9:359:-26.6527,0,-34.5649 dDocent_Contig_5905 23 . G C 163.699 . AB=0.139785;ABP=107.825;AC=2;AF=0.25;AN=8;AO=15;CIGAR=1X;DP=191;DPB=191;DPRA=2.43478;EPP=35.5824;EPPR=385.189;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=598;QR=7002;RO=176;RPL=0;RPP=35.5824;RPPR=385.189;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=176;SRP=385.189;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:49:40,9:40:1595:9:357:-17.7384,0,-129.029 0/0:75:73,2:73:2867:2:82:0,-14.7976,-250.376 0/1:44:40,4:40:1615:4:159:-1.4468,0,-132.335 0/0:23:23,0:23:925:0:0:0,-6.92369,-83.555 dDocent_Contig_5906 32 . C A 30.7078 . AB=0.2;ABP=10.8276;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X;DP=52;DPB=52;DPRA=0.714286;EPP=7.35324;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=2005;RO=50;RPL=0;RPP=7.35324;RPPR=111.584;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:12:12,0:12:483:0:0:0,-3.61236,-43.8207 0/0:20:20,0:20:815:0:0:0,-6.0206,-73.6642 0/1:10:8,2:8:310:2:82:-4.76938,0,-25.2444 0/0:10:10,0:10:397:0:0:0,-3.0103,-36.087 dDocent_Contig_5907 8 . A G 2190.28 . AB=0.0398445;ABP=1895.52;AC=0;AF=0;AN=8;AO=41;CIGAR=1M1X2M;DP=1169;DPB=1169;DPRA=0;EPP=92.0407;EPPR=1705.44;GTI=0;LEN=1;MEANALT=9;MQM=50.8537;MQMR=57.9082;NS=4;NUMALT=5;ODDS=0;PAIRED=0;PAIREDR=0.557398;PAO=0;PQA=0;PQR=0;PRO=0;QA=1493;QR=29859;RO=784;RPL=0;RPP=92.0407;RPPR=1705.44;RPR=41;RUN=1;SAF=41;SAP=92.0407;SAR=0;SRF=784;SRP=1705.44;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:371:246,2,28,14,27,37:246:9354:2,28,14,27,37:78,927,536,830,1412:-39.5496,-107.19,-868.02,-40.7616,-795.778,-793.762,-69.6323,-824.656,-758.224,-826.853,-48.2406,-803.254,-736.823,-765.699,-801.538,0,-755.032,-688.6,-717.477,-696.076,-750.305 0|0:394:256,17,15,10,29,54:256:9760:17,15,10,29,54:643,459,324,808,2084:-92.2499,-116.6,-904.829,-135.235,-875.865,-924.058,-143.897,-884.53,-903.157,-934.228,-106.671,-847.295,-865.922,-874.586,-891.273,0,-740.659,-759.287,-767.951,-730.717,-777.112 0|0:264:184,34,3,17,4,14:184:6991:34,3,17,4,14:1295,100,633,94,528:-50.8515,0,-559.648,-98.715,-562.355,-667.678,-56.7954,-520.438,-619.136,-621.545,-99.064,-562.701,-661.399,-619.482,-667.722,-63.3743,-527.019,-625.717,-583.8,-626.063,-629.03 0|0:140:98,5,4,0,3,24:98:3754:5,4,0,3,24:192,114,0,83,916:-43.775,-57.5099,-364.038,-64.3352,-356.598,-371.155,-73.276,-365.543,-372.359,-381.304,-66.8143,-359.077,-365.894,-374.839,-373.936,0,-292.299,-299.116,-308.061,-301.596,-300.836 dDocent_Contig_5908 11 . T C 48520.2 . AB=0.078487;ABP=3266.98;AC=8;AF=1;AN=8;AO=166;CIGAR=1X6M;DP=2115;DPB=2115;DPRA=0;EPP=363.475;EPPR=265.758;GTI=0;LEN=1;MEANALT=11.5;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=0.987952;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6609;QR=4656;RO=121;RPL=0;RPP=363.475;RPPR=265.758;RPR=166;RUN=1;SAF=166;SAP=363.475;SAR=0;SRF=121;SRP=265.758;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:670:30,124,407,62:30:1161:124,407,62:4859,15770,2469:-1590.54,-1200.02,-1258.06,-304.189,0,-277.036,-1396.28,-1092.09,-196.258,-1472.98 1|1:656:33,116,422,48:33:1273:116,422,48:4540,16380,1921:-1604.54,-1241.19,-1310.8,-268.75,0,-246.251,-1456.24,-1187.48,-215.045,-1546.32 1|1:560:45,116,289,46:45:1722:116,289,46:4513,11250,1809:-1140.52,-783.197,-889.576,-229.573,0,-283.874,-1005.28,-775.707,-222.083,-1132.73 1|1:229:13,45,134,10:13:500:45,134,10:1727,5198,410:-523.809,-385.98,-413.483,-100.692,0,-101.403,-493.881,-393.187,-107.898,-531.92 dDocent_Contig_5909 34 . A G 163.143 . AB=0.183673;ABP=45.5977;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X;DP=179;DPB=179;DPRA=1.13077;EPP=22.5536;EPPR=372.161;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=360;QR=6618;RO=170;RPL=0;RPP=22.5536;RPPR=372.161;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=170;SRP=372.161;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:43:43,0:43:1645:0:0:0,-12.9443,-148.278 0/0:40:40,0:40:1589:0:0:0,-12.0412,-143.248 0/1:49:40,9:40:1550:9:360:-18.0133,0,-124.999 0/0:47:47,0:47:1834:0:0:0,-14.1484,-165.269 dDocent_Contig_5910 13 . C T 1269.08 . AB=0.247706;ABP=123.537;AC=4;AF=0.5;AN=8;AO=54;CIGAR=1X1M1X;DP=218;DPB=218;DPRA=0;EPP=120.27;EPPR=324.388;GTI=0;LEN=1;MEANALT=2;MQM=59.8148;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.945946;PAO=0;PQA=0;PQR=0;PRO=0;QA=2166;QR=5808;RO=148;RPL=0;RPP=120.27;RPPR=324.388;RPR=54;RUN=1;SAF=54;SAP=120.27;SAR=0;SRF=148;SRP=324.388;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:53:29,17,7:29:1134:17,7:683,282:-47.5497,0,-88.1031,-33.0363,-69.9754,-124.152 0|1:51:46,5,0:46:1794:5,0:201,0:-3.11857,0,-146.34,-16.966,-147.845,-164.411 0|1:79:50,24,4:50:1974:24,4:960,159:-64.0158,0,-155.198,-65.9769,-149.332,-227.195 0|1:35:23,8,4:23:906:8,4:322,162:-19.6133,0,-72.1173,-13.1781,-61.1658,-86.5025 dDocent_Contig_5911 12 . T C 268.954 . AB=0.062069;ABP=244.553;AC=0;AF=0;AN=8;AO=9;CIGAR=1X3M1X;DP=232;DPB=232;DPRA=1.57609;EPP=14.8328;EPPR=365.697;GTI=0;LEN=1;MEANALT=2.5;MQM=41.1111;MQMR=58.0819;NS=4;NUMALT=3;ODDS=0;PAIRED=0.777778;PAIREDR=0.146199;PAO=0;PQA=0;PQR=0;PRO=0;QA=340;QR=6170;RO=171;RPL=0;RPP=22.5536;RPPR=374.332;RPR=9;RUN=1;SAF=8;SAP=14.8328;SAR=1;SRF=170;SRP=365.697;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:65:51,3,0,11:51:1837:3,0,11:113,0,418:-3.69515,-9.85533,-154.792,-19.0477,-155.695,-164.859,0,-136.555,-145.718,-142.406 0|0:80:53,6,7,14:53:1908:6,7,14:227,246,532:-9.09942,-9.60262,-157.835,-6.7724,-141.376,-154.707,0,-134.562,-131.736,-145.784 0|0:46:41,0,0,5:41:1481:0,0,5:0,0,192:0,-12.3422,-133.271,-12.3422,-133.271,-133.271,-0.0933607,-121.327,-121.327,-119.822 0|0:41:26,0,3,12:26:944:0,3,12:0,40,475:-19.4957,-27.3225,-102.225,-25.4122,-100.296,-99.3925,0,-75.0589,-73.1383,-71.4465 dDocent_Contig_5912 46 . C A 241.106 . AB=0.375;ABP=6.26751;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X;DP=101;DPB=101;DPRA=0.935065;EPP=22.5536;EPPR=202.786;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.967391;PAO=0;PQA=0;PQR=0;PRO=0;QA=363;QR=3707;RO=92;RPL=0;RPP=22.5536;RPPR=202.786;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=92;SRP=202.786;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:30:30,0:30:1203:0:0:0,-9.0309,-108.546 0/0:41:41,0:41:1658:0:0:0,-12.3422,-149.444 0/1:24:15,9:15:600:9:363:-25.8096,0,-47.1118 0/0:6:6,0:6:246:0:0:0,-1.80618,-22.5201 dDocent_Contig_5913 1 . N G 112.807 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=121;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:121:-11.2802,-0.90309,0 dDocent_Contig_5914 25 . T C 7222.75 . AB=0.488069;ABP=3.58025;AC=6;AF=0.75;AN=8;AO=225;CIGAR=1X1M;DP=461;DPB=461;DPRA=0;EPP=491.592;EPPR=280.959;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=9019;QR=5102;RO=128;RPL=0;RPP=491.592;RPPR=280.959;RPR=225;RUN=1;SAF=225;SAP=491.592;SAR=0;SRF=128;SRP=280.959;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:144:31,37,69:31:1241:37,69:1470,2770:-237.689,-126.006,-217.098,-18.7833,0,-100.244 0|1:173:66,33,71:66:2641:33,71:1311,2837:-213.781,-125.73,-333.339,0,-109.626,-196.171 1|1:61:12,14,33:12:484:14,33:562,1319:-111.435,-68.7388,-104.421,-6.40982,0,-36.3724 0|1:83:19,10,52:19:736:10,52:403,2093:-166.769,-139.271,-196.716,0,-27.2274,-44.7949 dDocent_Contig_5915 72 . G T 120.371 . AB=0.18;ABP=47.4821;AC=2;AF=0.25;AN=8;AO=11;CIGAR=1X;DP=131;DPB=131;DPRA=0.432749;EPP=26.8965;EPPR=263.587;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=398;QR=4450;RO=120;RPL=11;RPP=26.8965;RPPR=263.587;RPR=0;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=120;SRP=263.587;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:57:57,0:57:2120:0:0:0,-17.1587,-191.041 0/1:30:23,7:23:854:7:249:-13.722,0,-68.1439 0/0:24:22,2:22:806:2:74:0,-0.199286,-65.8326 0/1:20:18,2:18:670:2:75:-1.0995,0,-54.6094 dDocent_Contig_5916 81 . C T 2778.18 . AB=0.0636364;ABP=184.94;AC=0;AF=0;AN=8;AO=7;CIGAR=1X1M1X;DP=199;DPB=199;DPRA=0;EPP=18.2106;EPPR=185.414;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=248;QR=2979;RO=84;RPL=7;RPP=18.2106;RPPR=185.414;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=84;SRP=185.414;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:89:38,0,51:38:1352:0,51:0,1810:-136.39,-147.83,-258.016,0,-110.542,-95.1894 0|0:35:20,3,12:20:703:3,12:108,431:-29.1381,-26.3462,-82.6609,0,-48.4018,-53.6028 0|0:58:18,3,37:18:640:3,37:105,1282:-98.7688,-95.6439,-146.9,0,-43.6182,-41.0225 0|0:17:8,1,8:8:284:1,8:35,286:-20.9183,-20.4796,-43.3176,0,-20.2975,-20.7365 dDocent_Contig_5917 48 . C T 33.9032 . AB=0.0962963;ABP=194.116;AC=3;AF=0.375;AN=8;AO=13;CIGAR=1X;DP=166;DPB=166;DPRA=1.45161;EPP=31.2394;EPPR=335.246;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=516;QR=6103;RO=153;RPL=0;RPP=31.2394;RPPR=335.246;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=153;SRP=335.246;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:57:51,6:51:2064:6:239:-4.72572,0,-168.778 0/1:42:38,4:38:1522:4:156:-1.77086,0,-124.577 0/1:36:33,3:33:1315:3:121:-0.443117,0,-107.774 0/0:31:31,0:31:1202:0:0:0,-9.33193,-108.451 dDocent_Contig_5918 12 . A T 675.103 . AB=0.256566;ABP=257.801;AC=4;AF=0.5;AN=8;AO=127;CIGAR=1X;DP=495;DPB=495;DPRA=0;EPP=278.787;EPPR=802.112;GTI=0;LEN=1;MEANALT=1;MQM=19.937;MQMR=60;NS=4;NUMALT=1;ODDS=2.77556e-17;PAIRED=0.023622;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4762;QR=14733;RO=368;RPL=0;RPP=278.787;RPPR=802.112;RPR=127;RUN=1;SAF=127;SAP=278.787;SAR=0;SRF=368;SRP=802.112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:162:123,39:123:4932:39:1464:-17.5734,0,-394.995 0/1:186:131,55:131:5257:55:2087:-40.7759,0,-416.989 0/1:97:76,21:76:3030:21:778:-11.1352,0,-243.582 0/1:50:38,12:38:1514:12:433:-5.4237,0,-121.453 dDocent_Contig_5919 9 . T C 421.012 . AB=0.150485;ABP=221.591;AC=2;AF=0.25;AN=8;AO=43;CIGAR=1X;DP=415;DPB=415;DPRA=0;EPP=96.3836;EPPR=810.798;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1633;QR=14169;RO=372;RPL=0;RPP=96.3836;RPPR=810.798;RPR=43;RUN=1;SAF=43;SAP=96.3836;SAR=0;SRF=372;SRP=810.798;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:116:106,10:106:4011:10:383:0,-0.0940715,-326.261 0/1:111:95,16:95:3629:16:613:-22.0947,0,-293.313 0/0:93:91,2:91:3495:2:63:0,-22.0142,-308.697 0/1:95:80,15:80:3034:15:574:-23.4036,0,-244.629 dDocent_Contig_5920 33 . T C 201.041 . AB=0.103125;ABP=440.806;AC=2;AF=0.25;AN=8;AO=56;CIGAR=1X;DP=697;DPB=697;DPRA=0;EPP=124.613;EPPR=1394.92;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2238;QR=25717;RO=641;RPL=0;RPP=124.613;RPPR=1394.92;RPR=56;RUN=1;SAF=56;SAP=124.613;SAR=0;SRF=641;SRP=1394.92;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:218:199,19:199:7978:19:761:-3.18775,0,-651.966 0/0:247:233,14:233:9324:14:551:0,-24.4248,-788.646 0/0:130:121,9:121:4863:9:363:0,-6.10072,-404.522 0/1:102:88,14:88:3552:14:563:-20.3073,0,-288.995 dDocent_Contig_5921 17 . T A 5672.62 . AB=0.341977;ABP=136.836;AC=4;AF=0.5;AN=8;AO=211;CIGAR=1X;DP=617;DPB=617;DPRA=0;EPP=461.191;EPPR=884.628;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=8441;QR=16274;RO=406;RPL=0;RPP=461.191;RPPR=884.628;RPR=211;RUN=1;SAF=211;SAP=461.191;SAR=0;SRF=406;SRP=884.628;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:204:138,66:138:5570:66:2643:-176.581,0,-439.677 0/1:214:134,80:134:5333:80:3196:-223.279,0,-415.386 0/1:120:81,39:81:3263:39:1554:-103.97,0,-257.597 0/1:79:53,26:53:2108:26:1048:-70.8291,0,-166.111 dDocent_Contig_5922 195 . A G 160.424 . AB=0.333333;ABP=9.52472;AC=2;AF=0.25;AN=8;AO=15;CIGAR=1X;DP=154;DPB=154;DPRA=0.551724;EPP=35.5824;EPPR=304.845;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=475;QR=5505;RO=139;RPL=15;RPP=35.5824;RPPR=304.845;RPR=0;RUN=1;SAF=0;SAP=35.5824;SAR=15;SRF=0;SRP=304.845;SRR=139;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:58:58,0:58:2304:0:0:0,-17.4597,-207.524 0/0:69:63,6:63:2479:6:176:0,-4.64477,-207.124 0/1:14:9,5:9:356:5:163:-10.7778,0,-28.1856 0/1:13:9,4:9:366:4:136:-8.66258,0,-29.3918 dDocent_Contig_5923 30 . G A 34.4718 . AB=0.142857;ABP=26.2761;AC=2;AF=0.25;AN=8;AO=6;CIGAR=1X1M;DP=144;DPB=144;DPRA=0.660377;EPP=16.0391;EPPR=298.331;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=3.46945e-18;PAIRED=0;PAIREDR=0.977941;PAO=0;PQA=0;PQR=0;PRO=0;QA=246;QR=5371;RO=136;RPL=0;RPP=16.0391;RPPR=298.331;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=136;SRP=298.331;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:53:53,0,0:53:2068:0,0:0,0:0,-15.9546,-186.312,-15.9546,-186.312,-186.312 0|1:21:19,2,0:19:765:2,0:71,0:-0.418747,0,-62.8503,-6.13832,-63.4523,-69.2314 0|0:49:46,0,3:46:1843:0,3:0,123:0,-13.8474,-165.672,-3.28568,-155.519,-154.616 0|1:21:18,0,3:18:695:0,3:0,123:-5.14316,-10.5617,-67.6133,0,-57.4576,-56.5546 dDocent_Contig_5924 15 . A T 4283.56 . AB=0.324701;ABP=137.001;AC=4;AF=0.5;AN=8;AO=163;CIGAR=1X;DP=502;DPB=502;DPRA=0;EPP=356.96;EPPR=739.139;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6506;QR=13456;RO=339;RPL=0;RPP=356.96;RPPR=739.139;RPR=163;RUN=1;SAF=163;SAP=356.96;SAR=0;SRF=339;SRP=739.139;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:171:103,68:103:4115:68:2705:-192.088,0,-318.832 0/1:179:124,55:124:4947:55:2195:-143.834,0,-391.24 0/1:108:72,36:72:2809:36:1445:-97.7873,0,-220.417 0/1:44:40,4:40:1585:4:161:-1.63016,0,-129.634 dDocent_Contig_5926 12 . C T 660.181 . AB=0.161417;ABP=255.927;AC=4;AF=0.5;AN=8;AO=41;CIGAR=1X;DP=254;DPB=254;DPRA=0;EPP=92.0407;EPPR=465.534;GTI=0;LEN=1;MEANALT=1;MQM=59.122;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.926829;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1651;QR=8514;RO=213;RPL=0;RPP=92.0407;RPPR=465.534;RPR=41;RUN=1;SAF=41;SAP=92.0407;SAR=0;SRF=213;SRP=465.534;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:75:60,15:60:2379:15:602:-31.7788,0,-191.674 0/1:88:76,12:76:3058:12:485:-17.5106,0,-248.804 0/1:63:52,11:52:2075:11:441:-21.0808,0,-167.962 0/1:28:25,3:25:1002:3:123:-3.03595,0,-82.0424 dDocent_Contig_5927 21 . A T 76.6222 . AB=0.0666667;ABP=51.9408;AC=0;AF=0;AN=8;AO=2;CIGAR=1X2M11D1X3M;DP=97;DPB=85.6667;DPRA=1.76471;EPP=7.35324;EPPR=172.385;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=70;QR=2697;RO=78;RPL=0;RPP=7.35324;RPPR=172.385;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=78;SRP=172.385;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:21:15,0,4:15:513:0,4:0,138:-6.8792,-11.3947,-53.0934,0,-41.8753,-40.6712 0|0:29:24,0,4:24:855:0,4:0,139:-4.14639,-11.3711,-81.0803,0,-69.7798,-68.5757 0|0:17:15,0,1:15:502:0,1:0,35:0,-4.51545,-45.1685,-1.64775,-42.3198,-42.0188 0|0:30:24,2,4:24:827:2,4:70,111:-1.51023,-3.01534,-69.6454,0,-61.4738,-65.9656 dDocent_Contig_5928 24 . T A 11123.6 . AB=0.718053;ABP=206.613;AC=4;AF=0.5;AN=8;AO=354;CIGAR=1X;DP=493;DPB=493;DPRA=0;EPP=771.712;EPPR=304.845;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=14089;QR=5574;RO=139;RPL=0;RPP=771.712;RPPR=304.845;RPR=354;RUN=1;SAF=354;SAP=771.712;SAR=0;SRF=139;SRP=304.845;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:154:42,112:42:1693:112:4445:-353.641,0,-106.232 0/1:157:17,140:17:691:140:5606:-457.089,0,-15.2555 0/1:97:42,55:42:1683:55:2170:-166.276,0,-122.494 0/1:85:38,47:38:1507:47:1868:-142.747,0,-110.285 dDocent_Contig_5929 8 . A T 233.254 . AB=0.134969;ABP=191.662;AC=3;AF=0.375;AN=8;AO=25;CIGAR=1X;DP=268;DPB=268;DPRA=0;EPP=57.2971;EPPR=530.678;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.9506;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=963;QR=9273;RO=243;RPL=0;RPP=57.2971;RPPR=530.678;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=243;SRP=530.678;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:69:61,8:61:2312:8:308:-7.31073,0,-187.525 0/0:105:102,3:102:3882:3:111:0,-21.2547,-339.128 0/1:50:45,5:45:1731:5:195:-2.8727,0,-140.997 0/1:44:35,9:35:1348:9:349:-18.5256,0,-108.351 dDocent_Contig_5930 116 . T C 36.7211 . AB=0.119403;ABP=87.3088;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=190;DPB=190;DPRA=1.63415;EPP=20.3821;EPPR=398.218;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=43.0989;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.604396;PAO=0;PQA=0;PQR=0;PRO=0;QA=280;QR=6257;RO=182;RPL=0;RPP=20.3821;RPPR=398.218;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=398.218;SRR=182;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:60:60,0:60:2081:0:0:0,-18.0618,-174.259 0/1:67:59,8:59:2026:8:280:-5.37098,0,-80.7975 0/0:40:40,0:40:1376:0:0:0,-12.0412,-119.517 0/0:23:23,0:23:774:0:0:0,-6.92369,-58.7919 dDocent_Contig_5931 17 . T A 2623.01 . AB=0.553459;ABP=6.95719;AC=4;AF=0.5;AN=8;AO=88;CIGAR=1X;DP=159;DPB=159;DPRA=0;EPP=194.1;EPPR=157.185;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3515;QR=2883;RO=71;RPL=0;RPP=194.1;RPPR=157.185;RPR=88;RUN=1;SAF=88;SAP=194.1;SAR=0;SRF=71;SRP=157.185;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:48:17,31:17:690:31:1249:-98.2273,0,-47.9781 0/1:62:24,38:24:980:38:1522:-118.556,0,-69.8306 0/1:28:16,12:16:650:12:474:-34.5777,0,-50.4041 0/1:21:14,7:14:563:7:270:-18.3383,0,-44.6907 dDocent_Contig_5932 64 . A T 305.688 . AB=0.152174;ABP=148.027;AC=2;AF=0.25;AN=8;AO=23;CIGAR=1X;DP=351;DPB=351;DPRA=0.860544;EPP=52.9542;EPPR=713.082;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=912;QR=12886;RO=327;RPL=23;RPP=52.9542;RPPR=713.082;RPR=0;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=327;SRP=713.082;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:98:98,0:98:3849:0:0:0,-29.5009,-346.412 0/0:115:113,2:113:4447:2:82:0,-26.8388,-392.391 0/1:92:80,12:80:3179:12:467:-14.6815,0,-258.491 0/1:46:36,9:36:1411:9:363:-19.2851,0,-113.514 dDocent_Contig_5933 198 . A G 6473.09 . AB=0.604585;ABP=36.1673;AC=5;AF=0.625;AN=8;AO=211;CIGAR=1X4M;DP=349;DPB=349;DPRA=0;EPP=461.191;EPPR=228.843;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=8040;QR=3829;RO=104;RPL=211;RPP=461.191;RPPR=228.843;RPR=0;RUN=1;SAF=0;SAP=461.191;SAR=211;SRF=0;SRP=228.843;SRR=104;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:100:57,0,43:57:2095:0,43:0,1639:-117.669,-134.827,-306.095,0,-171.643,-158.699 1|1:145:23,31,89:23:839:31,89:1152,3368:-294.912,-207.555,-266.761,-25.7494,0,-67.4967 0|1:74:17,0,57:17:634:0,57:0,2190:-175.045,-180.163,-232.066,0,-52.2785,-35.1198 0|1:30:7,1,22:7:261:1,22:38,843:-67.0815,-66.0723,-87.1366,0,-18.2442,-14.7389 dDocent_Contig_5934 8 . A T 119.054 . AB=0.16;ABP=53.2147;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X;DP=147;DPB=147;DPRA=0.771084;EPP=22.5536;EPPR=302.673;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.942029;PAO=0;PQA=0;PQR=0;PRO=0;QA=350;QR=5240;RO=138;RPL=0;RPP=22.5536;RPPR=302.673;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=138;SRP=302.673;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:50:42,8:42:1604:8:311:-13.3028,0,-129.577 0/0:41:41,0:41:1543:0:0:0,-12.3422,-139.14 0/0:42:42,0:42:1616:0:0:0,-12.6433,-145.706 0/0:14:13,1:13:477:1:39:0,-0.317855,-39.3704 dDocent_Contig_5935 35 . A G 538.308 . AB=0.252747;ABP=51.3315;AC=1;AF=0.125;AN=8;AO=28;CIGAR=1X;DP=317;DPB=317;DPRA=1.49606;EPP=63.8115;EPPR=628.394;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1121;QR=11474;RO=288;RPL=0;RPP=63.8115;RPPR=628.394;RPR=28;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=288;SRP=628.394;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:99:93,5:93:3689:5:203:0,-11.2484,-313.387 0/0:91:91,0:91:3648:0:0:0,-27.3937,-328.335 0/1:91:68,23:68:2691:23:918:-55.5298,0,-214.916 0/0:36:36,0:36:1446:0:0:0,-10.8371,-130.386 dDocent_Contig_5936 85 . C G 59.6589 . AB=0.172414;ABP=30.0414;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=68;DPB=68;DPRA=2.23077;EPP=13.8677;EPPR=139.813;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.650794;PAO=0;PQA=0;PQR=0;PRO=0;QA=175;QR=2234;RO=63;RPL=5;RPP=13.8677;RPPR=139.813;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=63;SRP=139.813;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:24,5:24:855:5:175:-7.36382,0,-68.5416 0/0:13:13,0:13:460:0:0:0,-3.91339,-41.7351 0/0:18:18,0:18:631:0:0:0,-5.41854,-57.1163 0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674 dDocent_Contig_5937 9 . T C 2541.95 . AB=0.508571;ABP=3.12198;AC=4;AF=0.5;AN=8;AO=89;CIGAR=1X2M1X2M9I4M;DP=175;DPB=256.9;DPRA=0;EPP=196.271;EPPR=185.414;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=0.988095;PAO=0;PQA=0;PQR=0;PRO=0;QA=3480;QR=3247;RO=84;RPL=0;RPP=196.271;RPPR=185.414;RPR=89;RUN=1;SAF=89;SAP=196.271;SAR=0;SRF=84;SRP=185.414;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:40:16,24:16:627:24:939:-72.7787,0,-44.7253 0|1:58:33,24:33:1263:24:949:-68.162,0,-96.3972 0|1:48:19,29:19:741:29:1132:-87.7243,0,-52.5688 0|1:29:16,12:16:616:12:460:-32.9276,0,-46.9556 dDocent_Contig_5938 8 . A T 502.262 . AB=0.11147;ABP=814.632;AC=2;AF=0.25;AN=8;AO=165;CIGAR=1X;DP=2050;DPB=2050;DPRA=0;EPP=361.303;EPPR=4096.24;GTI=0;LEN=1;MEANALT=1;MQM=59.8848;MQMR=58.6435;NS=4;NUMALT=1;ODDS=0;PAIRED=0.0606061;PAIREDR=0.390981;PAO=0;PQA=0;PQR=0;PRO=0;QA=6348;QR=71908;RO=1885;RPL=0;RPP=361.303;RPPR=4096.24;RPR=165;RUN=1;SAF=165;SAP=361.303;SAR=0;SRF=1885;SRP=4096.24;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:725:672,53:672:25663:53:2051:0,-33.4372,-2093.79 0/0:706:663,43:663:25284:43:1637:0,-64.9408,-2108.9 0/1:433:384,49:384:14606:49:1883:-39.3577,0,-1162.56 0/1:186:166,20:166:6355:20:777:-14.2665,0,-506.546 dDocent_Contig_5939 17 . A G 2118.52 . AB=0.657143;ABP=25.5316;AC=3;AF=0.375;AN=8;AO=69;CIGAR=1X;DP=123;DPB=123;DPRA=1.94444;EPP=152.842;EPPR=120.27;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.898551;PAIREDR=0.685185;PAO=0;PQA=0;PQR=0;PRO=0;QA=2755;QR=2157;RO=54;RPL=0;RPP=152.842;RPPR=120.27;RPR=69;RUN=1;SAF=69;SAP=152.842;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:55:14,41:14:558:41:1620:-129.47,0,-34.0068 0/1:24:9,15:9:363:15:614:-48.3717,0,-25.8096 0/1:26:13,13:13:516:13:521:-39.4078,0,-38.9609 0/0:18:18,0:18:720:0:0:0,-5.41854,-65.128 dDocent_Contig_5940 13 . A G 837.808 . AB=0.424658;ABP=6.60959;AC=4;AF=0.5;AN=8;AO=31;CIGAR=1X;DP=73;DPB=73;DPRA=0;EPP=70.3259;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.967742;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1241;QR=1707;RO=42;RPL=0;RPP=70.3259;RPPR=94.2121;RPR=31;RUN=1;SAF=31;SAP=70.3259;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:8,10:8:327:10:406:-31.4815,0,-24.3816 0/1:21:11,10:11:449:10:410:-30.9389,0,-34.444 0/1:24:15,9:15:610:9:343:-23.9888,0,-48.0125 0/1:10:8,2:8:321:2:82:-4.76938,0,-26.2476 dDocent_Contig_5941 12 . G A 6759.05 . AB=0.510067;ABP=3.40379;AC=4;AF=0.5;AN=8;AO=228;CIGAR=1X;DP=447;DPB=447;DPRA=0;EPP=498.106;EPPR=478.563;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=2.77556e-17;PAIRED=0.105263;PAIREDR=0.56621;PAO=0;PQA=0;PQR=0;PRO=0;QA=9080;QR=8708;RO=219;RPL=0;RPP=498.106;RPPR=478.563;RPR=228;RUN=1;SAF=228;SAP=498.106;SAR=0;SRF=219;SRP=478.563;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:130:63,67:63:2529:67:2698:-203.8,0,-188.614 0/1:122:56,66:56:2243:66:2631:-200.193,0,-165.315 0/1:115:56,59:56:2206:59:2295:-172.107,0,-164.1 0/1:80:44,36:44:1730:36:1456:-107.204,0,-131.845 dDocent_Contig_5943 35 . G A 463.977 . AB=0.107527;ABP=127.438;AC=0;AF=0;AN=8;AO=10;CIGAR=1M1I1X1M1X3M1X4M;DP=325;DPB=325.5;DPRA=1.29167;EPP=24.725;EPPR=591.479;GTI=0;LEN=1;MEANALT=6;MQM=60;MQMR=59.9188;NS=4;NUMALT=3;ODDS=2.77556e-17;PAIRED=1;PAIREDR=0.98893;PAO=0;PQA=0;PQR=0;PRO=0;QA=389;QR=10590;RO=271;RPL=0;RPP=24.725;RPPR=591.479;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=271;SRP=591.479;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:93:51,10,7,18:51:1995:10,7,18:389,280,718:-43.7861,-27.1724,-188.185,-36.1933,-168.251,-198.11,0,-132.061,-141.082,-158.609 0|0:88:78,0,0,9:78:3082:0,0,9:0,0,355:-6.00952,-29.4899,-283.134,-29.4899,-283.134,-283.134,0,-253.927,-253.927,-251.217 0|0:86:85,0,0,0:85:3311:0,0,0:0,0,0:0,-25.5875,-297.672,-25.5875,-297.672,-297.672,-25.5875,-297.672,-297.672,-297.672 0|0:58:57,0,1,0:57:2202:0,1,0:0,38,0:0,-17.1587,-198.001,-13.6705,-194.891,-194.59,-17.1587,-198.001,-194.891,-198.001 dDocent_Contig_5944 9 . T G 461.54 . AB=0.123223;ABP=523.361;AC=3;AF=0.375;AN=8;AO=71;CIGAR=1X;DP=669;DPB=669;DPRA=0;EPP=157.185;EPPR=1301.55;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2689;QR=22716;RO=598;RPL=0;RPP=157.185;RPPR=1301.55;RPR=71;RUN=1;SAF=71;SAP=157.185;SAR=0;SRF=598;SRP=1301.55;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:250:225,25:225:8544:25:962:-11.6364,0,-693.48 0/0:247:228,19:228:8664:19:716:0,-9.58602,-714.762 0/1:126:104,22:104:3941:22:834:-37.4515,0,-316.862 0/1:46:41,5:41:1567:5:177:-2.42506,0,-127.452 dDocent_Contig_5945 35 . G T 795.864 . AB=0.225;ABP=108.11;AC=2;AF=0.25;AN=8;AO=37;CIGAR=1X;DP=223;DPB=223;DPRA=2.64;EPP=83.3548;EPPR=406.904;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1491;QR=7439;RO=186;RPL=0;RPP=83.3548;RPPR=406.904;RPR=37;RUN=1;SAF=37;SAP=83.3548;SAR=0;SRF=186;SRP=406.904;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:25:25,0:25:991:0:0:0,-7.52575,-89.4861 0/1:65:40,25:40:1610:25:1003:-70.9961,0,-125.556 0/1:95:84,11:84:3378:11:447:-11.9882,0,-275.467 0/0:38:37,1:37:1460:1:41:0,-7.34457,-127.555 dDocent_Contig_5946 7 . A G 221.893 . AB=0.197674;ABP=71.2854;AC=2;AF=0.25;AN=8;AO=17;CIGAR=1X;DP=130;DPB=130;DPRA=1.95455;EPP=39.9253;EPPR=246.215;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.839286;PAO=0;PQA=0;PQR=0;PRO=0;QA=563;QR=4276;RO=112;RPL=0;RPP=39.9253;RPPR=246.215;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=112;SRP=246.215;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:20:20,0:20:769:0:0:0,-6.0206,-69.5389 0/1:46:39,7:39:1502:7:235:-7.62462,0,-121.606 0/1:40:29,10:29:1091:10:328:-17.9626,0,-86.6329 0/0:24:24,0:24:914:0:0:0,-7.22472,-82.5755 dDocent_Contig_5947 36 . T C 49.1542 . AB=0.112676;ABP=95.5273;AC=1;AF=0.125;AN=8;AO=10;CIGAR=1X;DP=249;DPB=249;DPRA=0.729167;EPP=24.725;EPPR=521.992;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=383;QR=9243;RO=239;RPL=0;RPP=24.725;RPPR=521.992;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=239;SRP=521.992;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:111:111,0:111:4329:0:0:0,-33.4143,-389.612 0/1:71:63,8:63:2464:8:307:-6.61438,0,-200.547 0/0:34:32,2:32:1173:2:76:0,-3.02076,-98.6355 0/0:33:33,0:33:1277:0:0:0,-9.93399,-115.209 dDocent_Contig_5948 9 . T C 6698.79 . AB=0.693252;ABP=108.76;AC=4;AF=0.5;AN=8;AO=226;CIGAR=1X;DP=326;DPB=326;DPRA=0;EPP=493.763;EPPR=220.158;GTI=0;LEN=1;MEANALT=1;MQM=59.8673;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.973451;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=8606;QR=3808;RO=100;RPL=0;RPP=493.763;RPPR=220.158;RPR=226;RUN=1;SAF=226;SAP=493.763;SAR=0;SRF=100;SRP=220.158;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:68:29,39:29:1100:39:1467:-111.8,0,-78.8328 0/1:78:10,68:10:373:68:2612:-211.79,0,-10.4374 0/1:113:37,76:37:1407:76:2883:-225.631,0,-92.8952 0/1:67:24,43:24:928:43:1644:-128.056,0,-63.6679 dDocent_Contig_5949 1 . N G 332.218 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=10;CIGAR=1X;DP=10;DPB=10;DPRA=0;EPP=24.725;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=347;QR=0;RO=0;RPL=0;RPP=24.725;RPPR=0;RPR=10;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0 1/1:1:0,1:0:0:1:34:-3.39891,-0.30103,0 1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0 1/1:6:0,6:0:0:6:205:-18.7844,-1.80618,0 dDocent_Contig_5950 1 . N G 197.834 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=6;CIGAR=1X;DP=6;DPB=6;DPRA=0;EPP=16.0391;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=8.76405;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=216;QR=0;RO=0;RPL=0;RPP=16.0391;RPPR=0;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:6:0,6:0:0:6:216:-19.7833,-1.80618,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_5951 10 . G A 6375.57 . AB=0.30012;ABP=292.077;AC=4;AF=0.5;AN=8;AO=250;CIGAR=1X;DP=833;DPB=833;DPRA=0;EPP=545.878;EPPR=1268.98;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=9946;QR=23068;RO=583;RPL=0;RPP=545.878;RPPR=1268.98;RPR=250;RUN=1;SAF=250;SAP=545.878;SAR=0;SRF=583;SRP=1268.98;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:315:238,77:238:9432:77:3049:-179.675,0,-753.517 0/1:306:192,114:192:7559:114:4557:-317.943,0,-587.847 0/1:106:76,30:76:3018:30:1202:-76.5466,0,-239.806 0/1:106:77,29:77:3059:29:1138:-70.7903,0,-243.487 dDocent_Contig_5953 57 . G T 44.1228 . AB=0.111111;ABP=73.9451;AC=1;AF=0.125;AN=8;AO=13;CIGAR=1X;DP=182;DPB=182;DPRA=0;EPP=31.2394;EPPR=369.989;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=527;QR=6733;RO=169;RPL=13;RPP=31.2394;RPPR=369.989;RPR=0;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=169;SRP=369.989;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:54:48,6:48:1905:6:241:-5.81018,0,-155.391 0/0:59:56,3:56:2224:3:122:0,-6.38828,-188.952 0/0:31:29,2:29:1164:2:82:0,-1.55225,-97.2592 0/0:38:36,2:36:1440:2:82:0,-3.65946,-122.072 dDocent_Contig_5954 16 . A G 32.3343 . AB=0.0952381;ABP=182.312;AC=1;AF=0.125;AN=8;AO=18;CIGAR=1X;DP=379;DPB=379;DPRA=0.765217;EPP=33.8935;EPPR=786.912;GTI=0;LEN=1;MEANALT=1;MQM=59.2222;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.944444;PAIREDR=0.639889;PAO=0;PQA=0;PQR=0;PRO=0;QA=699;QR=13965;RO=361;RPL=0;RPP=42.0968;RPPR=786.912;RPR=18;RUN=1;SAF=17;SAP=33.8935;SAR=1;SRF=361;SRP=786.912;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:126:114,12:114:4430:12:469:-4.63111,0,-360.766 0/0:115:115,0:115:4429:0:0:0,-34.6184,-398.623 0/0:93:88,5:88:3388:5:192:0,-10.3762,-287.412 0/0:45:44,1:44:1718:1:38:0,-9.74908,-151.061 dDocent_Contig_5955 1 . N G 110.956 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=119;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:119:-11.095,-0.90309,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_5956 77 . T A 2164.96 . AB=0.292818;ABP=137.978;AC=4;AF=0.5;AN=8;AO=106;CIGAR=1X;DP=362;DPB=362;DPRA=0;EPP=233.186;EPPR=558.907;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3684;QR=9088;RO=256;RPL=106;RPP=233.186;RPPR=558.907;RPR=0;RUN=1;SAF=106;SAP=233.186;SAR=0;SRF=256;SRP=558.907;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:190:137,53:137:4852:53:1829:-107.69,0,-379.633 0/1:46:41,5:41:1454:5:175:-2.24597,0,-117.304 0/1:91:49,42:49:1753:42:1473:-105.469,0,-130.66 0/1:35:29,6:29:1029:6:207:-8.43131,0,-82.3865 dDocent_Contig_5957 209 . N G 63.6177 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=67;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:67:-6.36069,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_5958 20 . T C 6260.39 . AB=0.520681;ABP=4.5372;AC=4;AF=0.5;AN=8;AO=214;CIGAR=1X3M1X;DP=411;DPB=411;DPRA=0;EPP=467.705;EPPR=430.79;GTI=0;LEN=1;MEANALT=1;MQM=59.5187;MQMR=60;NS=4;NUMALT=1;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=8427;QR=7769;RO=197;RPL=0;RPP=467.705;RPPR=430.79;RPR=214;RUN=1;SAF=214;SAP=467.705;SAR=0;SRF=197;SRP=430.79;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:103:40,63:40:1586:63:2475:-190.361,0,-111.977 0|1:101:56,45:56:2186:45:1776:-129.599,0,-166.53 0|1:156:70,86:70:2773:86:3395:-258.217,0,-202.743 0|1:51:31,20:31:1224:20:781:-55.2591,0,-95.0876 dDocent_Contig_5959 15 . A T 245.68 . AB=0.152381;ABP=113.218;AC=1;AF=0.125;AN=8;AO=16;CIGAR=1X;DP=254;DPB=254;DPRA=2.11409;EPP=37.7539;EPPR=519.821;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=636;QR=9353;RO=238;RPL=0;RPP=37.7539;RPPR=519.821;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=238;SRP=519.821;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:105:89,16:89:3507:16:636:-25.966,0,-284.071 0/0:58:58,0:58:2245:0:0:0,-17.4597,-202.226 0/0:48:48,0:48:1914:0:0:0,-14.4494,-172.466 0/0:43:43,0:43:1687:0:0:0,-12.9443,-152.061 dDocent_Contig_5960 39 . T A 50.4585 . AB=0.25;ABP=9.52472;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=122;DPB=122;DPRA=0.327273;EPP=9.52472;EPPR=261.416;GTI=0;LEN=1;MEANALT=1;MQM=40;MQMR=59.6807;NS=4;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=120;QR=4790;RO=119;RPL=0;RPP=9.52472;RPPR=261.416;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=119;SRP=261.416;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:60:60,0:60:2409:0:0:0,-18.0618,-216.688 0/0:28:28,0:28:1137:0:0:0,-8.42884,-102.341 0/0:22:22,0:22:890:0:0:0,-6.62266,-80.4074 0/1:12:9,3:9:354:3:120:-6.74482,0,-28.6081 dDocent_Contig_5961 147 . C G 62.0656 . AB=0.134615;ABP=63.3104;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=82;DPB=82;DPRA=3.82353;EPP=20.3821;EPPR=161.528;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.945205;PAO=0;PQA=0;PQR=0;PRO=0;QA=290;QR=2558;RO=73;RPL=0;RPP=20.3821;RPPR=152.961;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=1;SRP=152.961;SRR=72;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:7:7,0:7:233:0:0:0,-2.10721,-21.2934 0/1:52:44,7:44:1583:7:258:-7.90531,0,-127.09 0/0:10:10,0:10:331:0:0:0,-3.0103,-30.1049 0/0:13:12,1:12:411:1:32:0,-0.714077,-34.1122 dDocent_Contig_5962 29 . C A 63.0546 . AB=0.112676;ABP=95.5273;AC=1;AF=0.125;AN=8;AO=10;CIGAR=1X;DP=292;DPB=292;DPRA=0.896104;EPP=24.725;EPPR=615.366;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=401;QR=11251;RO=282;RPL=0;RPP=24.725;RPPR=615.366;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=282;SRP=615.366;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:71:63,8:63:2528:8:319:-7.7034,0,-206.276 0/0:95:95,0:95:3803:0:0:0,-28.5978,-342.26 0/0:67:65,2:65:2585:2:82:0,-12.3893,-224.989 0/0:59:59,0:59:2335:0:0:0,-17.7608,-210.308 dDocent_Contig_5963 8 . A C 628.243 . AB=0.23622;ABP=79.7642;AC=2;AF=0.25;AN=8;AO=36;CIGAR=1X;DP=228;DPB=228;DPRA=0;EPP=81.1833;EPPR=419.933;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=0.972222;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1386;QR=7323;RO=192;RPL=0;RPP=81.1833;RPPR=419.933;RPR=36;RUN=1;SAF=36;SAP=81.1833;SAR=0;SRF=192;SRP=419.933;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:53:47,6:47:1780:6:233:-5.38549,0,-144.502 0/1:74:50,24:50:1914:24:920:-60.8367,0,-150.228 0/0:76:71,5:71:2714:5:194:0,-5.04543,-226.615 0/0:25:24,1:24:915:1:39:0,-3.62919,-78.7694 dDocent_Contig_5965 16 . A C 1217.9 . AB=0.263959;ABP=98.3457;AC=4;AF=0.5;AN=8;AO=52;CIGAR=1X;DP=197;DPB=197;DPRA=0;EPP=115.927;EPPR=317.874;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.993103;PAO=0;PQA=0;PQR=0;PRO=0;QA=2079;QR=5784;RO=145;RPL=0;RPP=115.927;RPPR=317.874;RPR=52;RUN=1;SAF=52;SAP=115.927;SAR=0;SRF=145;SRP=317.874;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:61:48,13:48:1889:13:525:-29.2344,0,-151.86 0/1:61:38,23:38:1532:23:918:-64.5616,0,-119.753 0/1:58:49,9:49:1959:9:359:-15.211,0,-159.053 0/1:17:10,7:10:404:7:277:-20.1805,0,-31.6025 dDocent_Contig_5967 8 . A T 168.73 . AB=0.178571;ABP=53.2644;AC=1;AF=0.125;AN=8;AO=15;CIGAR=1X1M1X;DP=215;DPB=215;DPRA=1.19149;EPP=35.5824;EPPR=437.305;GTI=0;LEN=1;MEANALT=1;MQM=57;MQMR=59.85;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.935;PAO=0;PQA=0;PQR=0;PRO=0;QA=576;QR=7684;RO=200;RPL=0;RPP=35.5824;RPPR=437.305;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=200;SRP=437.305;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:56:46,10:46:1766:10:387:-18.2709,0,-142.336 0|0:64:61,3:61:2338:3:111:0,-8.94684,-200.296 0|0:48:46,2:46:1777:2:78:0,-7.04597,-152.774 0|0:47:47,0:47:1803:0:0:0,-14.1484,-162.518 dDocent_Contig_5968 41 . T C 9463.48 . AB=0.64482;ABP=89.176;AC=4;AF=0.5;AN=8;AO=305;CIGAR=1X;DP=473;DPB=473;DPRA=0;EPP=665.309;EPPR=359.183;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=12176;QR=6718;RO=168;RPL=0;RPP=665.309;RPPR=359.183;RPR=305;RUN=1;SAF=305;SAP=665.309;SAR=0;SRF=168;SRP=367.818;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:129:67,62:67:2669:62:2503:-186.562,0,-201.492 0/1:151:43,108:43:1739:108:4305:-341.939,0,-111.261 0/1:104:33,71:33:1327:71:2808:-221.504,0,-88.3852 0/1:89:25,64:25:983:64:2560:-203.74,0,-61.9744 dDocent_Contig_5969 17 . G A 274.354 . AB=0.416667;ABP=4.45795;AC=1;AF=0.125;AN=8;AO=14;CIGAR=1X;DP=118;DPB=118;DPRA=0.72973;EPP=33.4109;EPPR=228.843;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=563;QR=4132;RO=104;RPL=0;RPP=33.4109;RPPR=228.843;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=104;SRP=228.843;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:37:37,0:37:1447:0:0:0,-11.1381,-130.479 0/0:40:37,3:37:1484:3:122:0,-0.668707,-122.431 0/1:24:14,10:14:557:10:400:-29.1341,0,-43.2465 0/0:17:16,1:16:644:1:41:0,-1.02294,-54.1985 dDocent_Contig_5970 25 . C T 1044.82 . AB=0.161616;ABP=396.858;AC=4;AF=0.5;AN=8;AO=64;CIGAR=1X;DP=396;DPB=396;DPRA=0;EPP=141.985;EPPR=723.939;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2553;QR=13231;RO=332;RPL=0;RPP=141.985;RPPR=723.939;RPR=64;RUN=1;SAF=64;SAP=141.985;SAR=0;SRF=332;SRP=723.939;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:99:85,14:85:3405:14:568:-21.66,0,-276.688 0/1:99:83,16:83:3332:16:647:-28.7601,0,-270.124 0/1:122:107,15:107:4251:15:589:-16.612,0,-345.822 0/1:76:57,19:57:2243:19:749:-44.848,0,-179.159 dDocent_Contig_5971 28 . A G 2300.19 . AB=0.310345;ABP=93.6131;AC=4;AF=0.5;AN=8;AO=90;CIGAR=1X;DP=290;DPB=290;DPRA=0;EPP=198.443;EPPR=437.305;GTI=0;LEN=1;MEANALT=1;MQM=59.6889;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.977778;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3597;QR=8001;RO=200;RPL=0;RPP=198.443;RPPR=437.305;RPR=90;RUN=1;SAF=90;SAP=198.443;SAR=0;SRF=200;SRP=437.305;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:96:60,36:60:2423:36:1427:-99.7814,0,-189.311 0/1:110:94,16:94:3767:16:651:-25.8098,0,-305.918 0/1:50:32,18:32:1266:18:721:-50.1522,0,-99.146 0/1:34:14,20:14:545:20:798:-61.6733,0,-39.153 dDocent_Contig_5972 43 . T C 1682.95 . AB=0.353591;ABP=36.7101;AC=4;AF=0.5;AN=8;AO=64;CIGAR=1X;DP=181;DPB=181;DPRA=0;EPP=141.985;EPPR=257.073;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2543;QR=4657;RO=117;RPL=0;RPP=141.985;RPPR=257.073;RPR=64;RUN=1;SAF=64;SAP=141.985;SAR=0;SRF=117;SRP=257.073;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:51:29,22:29:1161:22:874:-63.6073,0,-89.4179 0/1:74:51,23:51:2004:23:924:-61.1843,0,-158.275 0/1:26:16,10:16:648:10:390:-27.6249,0,-50.8267 0/1:30:21,9:21:844:9:355:-23.2769,0,-67.2412 dDocent_Contig_5973 13 . T A 4708.71 . AB=0.481159;ABP=4.07401;AC=4;AF=0.5;AN=8;AO=166;CIGAR=1X2M1X;DP=345;DPB=345;DPRA=0;EPP=363.475;EPPR=391.704;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=2.77556e-17;PAIRED=1;PAIREDR=0.98324;PAO=0;PQA=0;PQR=0;PRO=0;QA=6457;QR=6750;RO=179;RPL=0;RPP=363.475;RPPR=391.704;RPR=166;RUN=1;SAF=166;SAP=363.475;SAR=0;SRF=179;SRP=391.704;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:96:44,52:44:1669:52:2031:-154.102,0,-121.577 0|1:118:65,53:65:2461:53:2073:-151.259,0,-186.176 0|1:94:54,40:54:2008:40:1554:-111.816,0,-152.669 0|1:37:16,21:16:612:21:799:-61.0915,0,-44.279 dDocent_Contig_5975 7 . A C 1523.09 . AB=0.382166;ABP=21.945;AC=4;AF=0.5;AN=8;AO=60;CIGAR=1X;DP=157;DPB=157;DPRA=0;EPP=124.758;EPPR=213.643;GTI=0;LEN=1;MEANALT=1;MQM=58.8167;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.966667;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2286;QR=3718;RO=97;RPL=0;RPP=133.299;RPPR=213.643;RPR=60;RUN=1;SAF=59;SAP=124.758;SAR=1;SRF=97;SRP=213.643;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:34:19,15:19:724:15:574:-41.7649,0,-55.2548 0/1:54:44,10:44:1694:10:374:-16.3917,0,-136.466 0/1:47:14,33:14:543:33:1260:-99.5437,0,-35.0676 0/1:22:20,2:20:757:2:78:-0.780813,0,-61.8331 dDocent_Contig_5977 76 . T C 804.163 . AB=0.19469;ABP=185.99;AC=2;AF=0.25;AN=8;AO=64;CIGAR=1X;DP=503;DPB=503;DPRA=0;EPP=141.985;EPPR=956.287;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2391;QR=15748;RO=439;RPL=64;RPP=141.985;RPPR=956.287;RPR=0;RUN=1;SAF=64;SAP=141.985;SAR=0;SRF=439;SRP=956.287;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:163:148,15:148:5322:15:535:0,-0.586329,-430.601 0/1:136:101,35:101:3649:35:1352:-81.0206,0,-287.656 0/0:114:109,5:109:3905:5:176:0,-18.137,-335.437 0/1:90:81,9:81:2872:9:328:-2.77554,0,-231.604 dDocent_Contig_5978 152 . A G 71.2041 . AB=0.108911;ABP=137.19;AC=2;AF=0.25;AN=8;AO=12;CIGAR=1X;DP=146;DPB=146;DPRA=1.98413;EPP=29.068;EPPR=293.988;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=485;QR=5403;RO=134;RPL=0;RPP=29.068;RPPR=293.988;RPR=12;RUN=1;SAF=0;SAP=29.068;SAR=12;SRF=0;SRP=293.988;SRR=134;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:71:63,8:63:2536:8:327:-8.42698,0,-206.991 0/1:30:27,3:27:1094:3:118:-1.97161,0,-89.7123 0/0:21:21,0:21:837:0:0:0,-6.32163,-75.6416 0/0:24:23,1:23:936:1:40:0,-3.22904,-80.5447 dDocent_Contig_5979 15 . G A 12542.9 . AB=0.665557;ABP=146.093;AC=4;AF=0.5;AN=8;AO=400;CIGAR=1X;DP=601;DPB=601;DPRA=0;EPP=871.599;EPPR=439.476;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=16030;QR=8004;RO=201;RPL=0;RPP=871.599;RPPR=439.476;RPR=400;RUN=1;SAF=400;SAP=871.599;SAR=0;SRF=201;SRP=439.476;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:144:49,95:49:1939:95:3813:-299.816,0,-131.363 0/1:245:61,184:61:2447:184:7378:-589.882,0,-146.621 0/1:102:54,48:54:2182:48:1915:-141.849,0,-165.837 0/1:110:37,73:37:1436:73:2924:-230.143,0,-96.3792 dDocent_Contig_5982 98 . N A 50.3502 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=53;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:53:-5.03393,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_5983 10 . C T 70.5878 . AB=0.114286;ABP=93.4676;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=151;DPB=151;DPRA=2.59259;EPP=20.3821;EPPR=313.531;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=324;QR=5754;RO=143;RPL=0;RPP=20.3821;RPPR=313.531;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=143;SRP=313.531;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:70:62,8:62:2481:8:324:-8.45672,0,-202.354 0/0:54:54,0:54:2181:0:0:0,-16.2556,-196.453 0/0:15:15,0:15:606:0:0:0,-4.51545,-54.877 0/0:12:12,0:12:486:0:0:0,-3.61236,-44.0916 dDocent_Contig_5984 16 . C A 1972.54 . AB=0.190939;ABP=259.378;AC=0;AF=0;AN=8;AO=61;CIGAR=1X1M1X;DP=345;DPB=345;DPRA=0;EPP=135.47;EPPR=445.991;GTI=0;LEN=1;MEANALT=2.25;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2443;QR=8024;RO=204;RPL=0;RPP=135.47;RPPR=445.991;RPR=61;RUN=1;SAF=61;SAP=135.47;SAR=0;SRF=204;SRP=445.991;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:120:57,28,34:57:2228:28,34:1132,1331:-92.266,-16.0899,-190.814,0,-89.8111,-172.91 0|0:134:81,25,28:81:3206:25,28:986,1113:-67.2464,-10.5112,-266.836,0,-182.734,-255.424 0|0:55:33,6,16:33:1286:6,16:244,644:-43.1395,-32.9461,-136.827,0,-85.5526,-100.865 0|0:36:33,2,1:33:1304:2,1:81,40:0,-3.25153,-109.949,-6.64056,-107.255,-113.634 dDocent_Contig_5985 15 . T C 7780.07 . AB=0.514677;ABP=3.96643;AC=4;AF=0.5;AN=8;AO=263;CIGAR=1X;DP=511;DPB=511;DPRA=0;EPP=574.108;EPPR=541.535;GTI=0;LEN=1;MEANALT=1;MQM=59.7567;MQMR=60;NS=4;NUMALT=1;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=10450;QR=9867;RO=248;RPL=0;RPP=574.108;RPPR=541.535;RPR=263;RUN=1;SAF=263;SAP=574.108;SAR=0;SRF=248;SRP=541.535;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:123:46,77:46:1795:77:3076:-239.881,0,-124.727 0/1:177:104,73:104:4194:73:2900:-207.807,0,-324.126 0/1:141:69,72:69:2727:72:2853:-212.706,0,-203.101 0/1:70:29,41:29:1151:41:1621:-125.012,0,-82.7976 dDocent_Contig_5986 93 . A T 1301.95 . AB=0.326425;ABP=53.5167;AC=4;AF=0.5;AN=8;AO=63;CIGAR=1X;DP=193;DPB=193;DPRA=0;EPP=139.813;EPPR=285.302;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.984127;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2160;QR=4381;RO=130;RPL=63;RPP=139.813;RPPR=285.302;RPR=0;RUN=1;SAF=63;SAP=139.813;SAR=0;SRF=130;SRP=285.302;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:68:51,17:51:1712:17:584:-32.4141,0,-133.893 0/1:64:45,19:45:1531:19:665:-40.9098,0,-118.816 0/1:36:26,10:26:867:10:328:-19.0005,0,-67.5008 0/1:25:8,17:8:271:17:583:-45.2685,0,-17.195 dDocent_Contig_5988 22 . T C 663.78 . AB=0.320988;ABP=25.5561;AC=1;AF=0.125;AN=8;AO=26;CIGAR=1M1I2M1X;DP=215;DPB=221.5;DPRA=1.81343;EPP=59.4686;EPPR=413.419;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1024;QR=7432;RO=189;RPL=0;RPP=59.4686;RPPR=413.419;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=189;SRP=413.419;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:33:33,0:33:1293:0:0:0,-9.93399,-116.647 0|1:81:55,26:55:2155:26:1024:-68.077,0,-169.761 0|0:76:76,0:76:2990:0:0:0,-22.8783,-269.222 0|0:25:25,0:25:994:0:0:0,-7.52575,-89.7615 dDocent_Contig_5989 133 . G T 1100.59 . AB=0.261084;ABP=103.658;AC=4;AF=0.5;AN=8;AO=53;CIGAR=1X;DP=203;DPB=203;DPRA=0;EPP=118.098;EPPR=328.731;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1969;QR=5668;RO=150;RPL=0;RPP=118.098;RPPR=328.731;RPR=53;RUN=1;SAF=0;SAP=118.098;SAR=53;SRF=0;SRP=328.731;SRR=150;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:60:52,8:52:1966:8:311:-10.2925,0,-159.116 0/1:68:54,14:54:2027:14:509:-25.6679,0,-162.185 0/1:53:31,22:31:1174:22:813:-57.53,0,-90.0033 0/1:22:13,9:13:501:9:336:-23.9666,0,-38.8155 dDocent_Contig_5990 57 . T C 10602.8 . AB=0.757238;ABP=261.077;AC=4;AF=0.5;AN=8;AO=340;CIGAR=1X;DP=449;DPB=449;DPRA=0;EPP=741.311;EPPR=237.529;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=2.77556e-17;PAIRED=0.997059;PAIREDR=0.990741;PAO=0;PQA=0;PQR=0;PRO=0;QA=13360;QR=4190;RO=108;RPL=340;RPP=741.311;RPPR=237.529;RPR=0;RUN=1;SAF=340;SAP=741.311;SAR=0;SRF=108;SRP=237.529;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:130:36,94:36:1392:94:3686:-292.634,0,-86.3973 0/1:141:34,107:34:1337:107:4240:-339.134,0,-78.1482 0/1:106:22,83:22:843:83:3265:-262.191,0,-44.4327 0/1:72:16,56:16:618:56:2169:-173.723,0,-34.274 dDocent_Contig_5991 10 . C T 80.9839 . AB=0.132075;ABP=65.3275;AC=1;AF=0.125;AN=8;AO=16;CIGAR=1X;DP=184;DPB=184;DPRA=0;EPP=37.7539;EPPR=367.818;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.97619;PAO=0;PQA=0;PQR=0;PRO=0;QA=641;QR=6708;RO=168;RPL=0;RPP=37.7539;RPPR=367.818;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=168;SRP=367.818;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:39:36,3:36:1442:3:122:0,-0.367677,-118.652 0/0:44:41,3:41:1630:3:117:0,-2.33603,-136.021 0/1:53:46,7:46:1837:7:282:-9.79689,0,-149.584 0/0:48:45,3:45:1799:3:120:0,-3.26175,-150.932 dDocent_Contig_5992 11 . A G 922.095 . AB=0.20354;ABP=175.537;AC=4;AF=0.5;AN=8;AO=46;CIGAR=1X;DP=226;DPB=226;DPRA=0;EPP=102.898;EPPR=393.875;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1847;QR=7195;RO=180;RPL=0;RPP=102.898;RPPR=393.875;RPR=46;RUN=1;SAF=46;SAP=102.898;SAR=0;SRF=180;SRP=393.875;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:93:74,19:74:2928:19:762:-40.9061,0,-235.629 0/1:42:31,11:31:1262:11:445:-27.7619,0,-101.201 0/1:43:32,11:32:1276:11:441:-27.0998,0,-102.16 0/1:48:43,5:43:1729:5:199:-3.838,0,-141.374 dDocent_Contig_5993 1 . N G 219.349 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=6;CIGAR=1X;DP=6;DPB=6;DPRA=0;EPP=16.0391;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0.666667;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=232;QR=0;RO=0;RPL=0;RPP=16.0391;RPPR=0;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:4:0,4:0:0:4:155:-14.3244,-1.20412,0 ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:77:-7.30883,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_5997 75 . C T 5118.02 . AB=0.648208;ABP=61.5835;AC=4;AF=0.5;AN=8;AO=199;CIGAR=1X;DP=307;DPB=307;DPRA=0;EPP=435.133;EPPR=237.529;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.994975;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6783;QR=3703;RO=108;RPL=199;RPP=435.133;RPPR=237.529;RPR=0;RUN=1;SAF=199;SAP=435.133;SAR=0;SRF=108;SRP=237.529;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:78:38,40:38:1310:40:1385:-101.469,0,-94.7213 0/1:79:19,60:19:651:60:2058:-161.714,0,-35.1302 0/1:80:38,42:38:1302:42:1421:-104.102,0,-93.3968 0/1:70:13,57:13:440:57:1919:-151.915,0,-18.8528 dDocent_Contig_5998 33 . T G 10606 . AB=0.519424;ABP=5.288;AC=4;AF=0.5;AN=8;AO=361;CIGAR=1X;DP=695;DPB=695;DPRA=0;EPP=786.912;EPPR=728.282;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.99723;PAIREDR=0.991018;PAO=0;PQA=0;PQR=0;PRO=0;QA=14189;QR=13189;RO=334;RPL=0;RPP=786.912;RPPR=728.282;RPR=361;RUN=1;SAF=361;SAP=786.912;SAR=0;SRF=334;SRP=728.282;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:177:75,102:75:2962:102:4066:-312.643,0,-213.402 0/1:208:110,98:110:4337:98:3846:-283.55,0,-327.683 0/1:215:100,115:100:3950:115:4478:-338.269,0,-290.772 0/1:95:49,46:49:1940:46:1799:-133.533,0,-146.207 dDocent_Contig_6000 15 . A T 114.892 . AB=0.193548;ABP=28.2974;AC=1;AF=0.125;AN=8;AO=10;CIGAR=1X;DP=160;DPB=160;DPRA=0;EPP=24.725;EPPR=328.731;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=405;QR=5930;RO=150;RPL=0;RPP=24.725;RPPR=328.731;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=150;SRP=328.731;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:42:41,1:41:1634:1:41:0,-8.54869,-143.193 0/0:48:46,2:46:1846:2:82:0,-6.66976,-158.572 0/0:39:38,1:38:1456:1:36:0,-8.14189,-127.689 0/1:31:25,6:25:994:6:246:-13.1882,0,-80.4272 dDocent_Contig_6001 148 . A G 2017.11 . AB=0.148504;ABP=1007.46;AC=2;AF=0.25;AN=8;AO=139;CIGAR=1X;DP=1990;DPB=1990;DPRA=0.888046;EPP=304.845;EPPR=4013.72;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.94964;PAIREDR=0.994044;PAO=0;PQA=0;PQR=0;PRO=0;QA=5402;QR=70520;RO=1847;RPL=0;RPP=304.845;RPPR=4013.72;RPR=139;RUN=1;SAF=0;SAP=304.845;SAR=139;SRF=0;SRP=4013.72;SRR=1847;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:426:332,93:332:12534:93:3566:-192.967,0,-999.385 0/0:480:478,0:478:18367:0:0:0,-143.892,-1651.72 0/0:574:574,0:574:21922:0:0:0,-172.791,-1971.54 0/1:510:463,46:463:17697:46:1836:-12.1425,0,-1438.34 dDocent_Contig_6002 14 . T C 4765.88 . AB=0.151185;ABP=2232.92;AC=4;AF=0.5;AN=8;AO=319;CIGAR=1X2M1X;DP=2110;DPB=2110;DPRA=0;EPP=695.71;EPPR=3473.02;GTI=0;LEN=1;MEANALT=6.75;MQM=44.7241;MQMR=59.4894;NS=4;NUMALT=2;ODDS=0;PAIRED=0.210031;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=12608;QR=63251;RO=1598;RPL=0;RPP=695.71;RPPR=3473.02;RPR=319;RUN=1;SAF=319;SAP=695.71;SAR=0;SRF=1598;SRP=3473.02;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:559:417,86,33:417:16471:86,33:3410,1327:-136.897,0,-1326.84,-153.254,-1243.56,-1496.06 0|1:672:489,111,36:489:19463:111,36:4367,1432:-180.618,0,-1568.32,-212.069,-1485.99,-1802.98 0|1:612:499,78,14:499:19676:78,14:3092,563:-86.9348,0,-1593.26,-190.809,-1570.4,-1803.35 0|1:267:193,44,9:193:7641:44,9:1739,367:-79.5354,0,-615.13,-107.366,-598.11,-733.034 dDocent_Contig_6005 12 . A G 109.681 . AB=0.230769;ABP=19.3799;AC=2;AF=0.25;AN=8;AO=6;CIGAR=1X;DP=62;DPB=62;DPRA=0.722222;EPP=16.0391;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=238;QR=2198;RO=56;RPL=0;RPP=16.0391;RPPR=124.613;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:15:15,0:15:586:0:0:0,-4.51545,-53.0817 0/0:21:21,0:21:832:0:0:0,-6.32163,-75.1974 0/1:12:10,2:10:388:2:80:-3.97943,0,-31.6643 0/1:14:10,4:10:392:4:158:-10.3855,0,-31.4239 dDocent_Contig_6006 209 . N G 70.2652 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=74;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:74:-7.02543,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_6007 143 . C T 149.196 . AB=0.116438;ABP=189.578;AC=1;AF=0.125;AN=8;AO=17;CIGAR=1X;DP=401;DPB=401;DPRA=1.71765;EPP=39.9253;EPPR=836.856;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=666;QR=14859;RO=384;RPL=0;RPP=39.9253;RPPR=836.856;RPR=17;RUN=1;SAF=0;SAP=39.9253;SAR=17;SRF=0;SRP=836.856;SRR=384;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:146:129,17:129:5027:17:666:-16.3176,0,-408.403 0/0:138:138,0:138:5334:0:0:0,-41.5421,-479.952 0/0:71:71,0:71:2715:0:0:0,-21.3731,-244.481 0/0:46:46,0:46:1783:0:0:0,-13.8474,-160.696 dDocent_Contig_6008 17 . G A 1102.24 . AB=0.155702;ABP=472.525;AC=3;AF=0.375;AN=8;AO=71;CIGAR=1X;DP=498;DPB=498;DPRA=3.61905;EPP=157.185;EPPR=930.229;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2800;QR=16778;RO=427;RPL=0;RPP=157.185;RPPR=930.229;RPR=71;RUN=1;SAF=71;SAP=157.185;SAR=0;SRF=427;SRP=930.229;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:190:158,32:158:6243:32:1254:-55.9343,0,-504.451 0/1:212:180,32:180:7080:32:1281:-51.739,0,-573.096 0/0:42:42,0:42:1649:0:0:0,-12.6433,-148.637 0/1:54:47,7:47:1806:7:265:-7.94834,0,-146.509 dDocent_Contig_6009 83 . T A 203.131 . AB=0.153226;ABP=132.528;AC=3;AF=0.375;AN=8;AO=20;CIGAR=1X;DP=145;DPB=145;DPRA=0;EPP=46.4397;EPPR=274.444;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=716;QR=4144;RO=125;RPL=20;RPP=46.4397;RPPR=274.444;RPR=0;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=125;SRP=274.444;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:21:20,1:20:648:1:37:0,-2.6238,-54.928 0/1:62:56,6:56:1840:6:216:-1.12613,0,-147.203 0/1:45:36,9:36:1240:9:322:-15.7774,0,-98.3537 0/1:17:13,4:13:416:4:141:-7.91932,0,-32.6304 dDocent_Contig_6011 11 . A G 8397.97 . AB=0.17455;ABP=2453.87;AC=4;AF=0.5;AN=8;AO=465;CIGAR=1X;DP=2664;DPB=2664;DPRA=0;EPP=1012.74;EPPR=4741.2;GTI=0;LEN=1;MEANALT=1.75;MQM=59.3742;MQMR=58.1586;NS=4;NUMALT=1;ODDS=1.11022e-16;PAIRED=0.432258;PAIREDR=0.572926;PAO=0;PQA=0;PQR=0;PRO=0;QA=18363;QR=87897;RO=2194;RPL=0;RPP=1012.74;RPPR=4767.22;RPR=465;RUN=1;SAF=465;SAP=1012.74;SAR=0;SRF=2191;SRP=4741.2;SRR=3;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:799:646,153:646:25842:153:6004:-299.212,0,-2069.39 0/1:792:664,126:664:26640:126:5017:-213.02,0,-2121.99 0/1:749:603,144:603:24206:144:5656:-280.645,0,-1927.31 0/1:324:281,42:281:11209:42:1686:-54.3187,0,-903.693 dDocent_Contig_6012 117 . T C 64.289 . AB=0.130435;ABP=84.8654;AC=1;AF=0.125;AN=8;AO=12;CIGAR=1X;DP=288;DPB=288;DPRA=1.0381;EPP=29.068;EPPR=600.165;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=418;QR=9275;RO=275;RPL=0;RPP=29.068;RPPR=600.165;RPR=12;RUN=1;SAF=0;SAP=29.068;SAR=12;SRF=0;SRP=600.165;SRR=275;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:69:60,9:60:2030:9:314:-7.82684,0,-162.201 0/0:70:69,0:69:2353:0:0:0,-20.7711,-211.963 0/0:85:83,2:83:2810:2:69:0,-19.0349,-246.597 0/0:64:63,1:63:2082:1:35:0,-15.7673,-184.146 dDocent_Contig_6013 78 . T C 75.0617 . AB=0.235294;ABP=13.3567;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=123;DPB=123;DPRA=0.481132;EPP=11.6962;EPPR=261.416;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=0;PAIREDR=0.764706;PAO=0;PQA=0;PQR=0;PRO=0;QA=155;QR=4747;RO=119;RPL=4;RPP=11.6962;RPPR=261.416;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=119;SRP=261.416;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:33:33,0:33:1321:0:0:0,-9.93399,-119.149 0/0:45:45,0:45:1798:0:0:0,-13.5463,-162.027 0/0:28:28,0:28:1102:0:0:0,-8.42884,-99.4648 0/1:17:13,4:13:526:4:155:-9.20514,0,-42.5693 dDocent_Contig_6014 106 . N C 254.338 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=9;CIGAR=2X;DP=9;DPB=9;DPRA=0;EPP=22.5536;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=262;QR=0;RO=0;RPL=0;RPP=22.5536;RPPR=0;RPR=9;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:5:0,5:0:0:5:128:-11.774,-1.50515,0 1|1:1:0,1:0:0:1:34:-3.39891,-0.30103,0 1|1:1:0,1:0:0:1:32:-3.19931,-0.30103,0 1|1:2:0,2:0:0:2:68:-6.45793,-0.60206,0 dDocent_Contig_6015 85 . T C 95.4805 . AB=0.186047;ABP=39.8243;AC=2;AF=0.25;AN=8;AO=10;CIGAR=1X;DP=139;DPB=139;DPRA=0.885965;EPP=24.725;EPPR=283.13;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=351;QR=4675;RO=129;RPL=10;RPP=24.725;RPPR=283.13;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=129;SRP=283.13;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:38:38,0:38:1391:0:0:0,-11.4391,-125.487 0/0:58:56,2:56:2016:2:71:0,-10.7177,-174.957 0/1:25:20,5:20:721:5:174:-8.47506,0,-57.6903 0/1:18:15,3:15:547:3:106:-4.47056,0,-44.1486 dDocent_Contig_6016 198 . A G 119.077 . AB=0.141304;ABP=105.825;AC=1;AF=0.125;AN=8;AO=13;CIGAR=1X;DP=284;DPB=284;DPRA=1.4375;EPP=31.2394;EPPR=591.479;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=452;QR=10208;RO=271;RPL=13;RPP=31.2394;RPPR=591.479;RPR=0;RUN=1;SAF=0;SAP=31.2394;SAR=13;SRF=0;SRP=591.479;SRR=271;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:92:79,13:79:2996:13:452:-13.3056,0,-242.112 0/0:109:109,0:109:4091:0:0:0,-32.8123,-368.275 0/0:61:61,0:61:2289:0:0:0,-18.3628,-206.229 0/0:22:22,0:22:832:0:0:0,-6.62266,-75.2033 dDocent_Contig_6017 1 . N G 148.758 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=7.37776;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=161;QR=0;RO=0;RPL=0;RPP=11.6962;RPPR=0;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:4:0,4:0:0:4:161:-14.8755,-1.20412,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_6019 15 . T C 3063.04 . AB=0.406593;ABP=23.6989;AC=4;AF=0.5;AN=8;AO=111;CIGAR=1X;DP=273;DPB=273;DPRA=0;EPP=244.044;EPPR=318.737;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.950311;PAO=0;PQA=0;PQR=0;PRO=0;QA=4369;QR=6002;RO=161;RPL=0;RPP=244.044;RPPR=352.617;RPR=111;RUN=1;SAF=111;SAP=244.044;SAR=0;SRF=157;SRP=318.737;SRR=4;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:99:74,24:74:2770:24:943:-55.5496,0,-219.858 0/1:100:27,73:27:1040:73:2906:-231.54,0,-63.8007 0/1:44:40,4:40:1459:4:150:-0.618015,0,-118.332 0/1:30:20,10:20:733:10:370:-24.6074,0,-57.2617 dDocent_Contig_6020 14 . T C 757.549 . AB=0.173184;ABP=335.136;AC=4;AF=0.5;AN=8;AO=62;CIGAR=1X;DP=358;DPB=358;DPRA=0;EPP=137.642;EPPR=377.707;GTI=0;LEN=1;MEANALT=1;MQM=59.6452;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.662162;PAO=0;PQA=0;PQR=0;PRO=0;QA=2107;QR=11474;RO=296;RPL=0;RPP=137.642;RPPR=645.766;RPR=62;RUN=1;SAF=0;SAP=137.642;SAR=62;SRF=261;SRP=377.707;SRR=35;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:109:82,27:82:3149:27:903:-48.7613,0,-250.73 0/1:130:114,16:114:4436:16:545:-10.237,0,-360.112 0/1:73:64,9:64:2469:9:311:-6.34802,0,-200.403 0/1:46:36,10:36:1420:10:348:-17.8065,0,-114.213 dDocent_Contig_6021 14 . G C 2422.55 . AB=0.0848708;ABP=408.659;AC=0;AF=0;AN=8;AO=23;CIGAR=7M1X1M;DP=362;DPB=271.333;DPRA=0;EPP=52.9542;EPPR=437.305;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=893;QR=7654;RO=200;RPL=0;RPP=52.9542;RPPR=437.305;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=200;SRP=437.305;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:91:54,16,21,0:54:2080:16,21,0:594,740,0:-43.9792,-11.6205,-177.615,0,-122.195,-164.477,-60.2348,-182.432,-170.798,-231.037 0|0:116:52,4,43,17:52:1975:4,43,17:145,1479,653:-104.424,-108.24,-269.004,0,-150.12,-149.012,-66.4759,-216.613,-108.364,-223.333 0|0:108:75,10,20,3:75:2863:10,20,3:372,732,118:-37.239,-29.3692,-261.255,0,-204.446,-228.87,-50.1071,-254.558,-225.184,-284.101 0|0:47:19,0,24,3:19:736:0,24,3:0,856,122:-64.0107,-69.7303,-130.203,0,-60.4469,-53.2221,-59.662,-120.138,-50.3813,-119.234 dDocent_Contig_6023 31 . G A 1872.32 . AB=0.144175;ABP=956.477;AC=3;AF=0.375;AN=8;AO=125;CIGAR=1X;DP=1170;DPB=1170;DPRA=0.953795;EPP=274.444;EPPR=2270.03;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5013;QR=41507;RO=1044;RPL=0;RPP=274.444;RPPR=2270.03;RPR=125;RUN=1;SAF=125;SAP=274.444;SAR=0;SRF=1044;SRP=2270.03;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:303:302,0:302:12032:0:0:0,-90.9111,-1081.65 0/1:367:313,54:313:12414:54:2143:-82.5684,0,-1005.92 0/1:305:250,55:250:9949:55:2219:-108.059,0,-802.955 0/1:195:179,16:179:7112:16:651:-0.222084,0,-581.056 dDocent_Contig_6024 65 . T G 151.165 . AB=0.125;ABP=149.585;AC=2;AF=0.25;AN=8;AO=16;CIGAR=1X;DP=207;DPB=207;DPRA=0.856322;EPP=37.7539;EPPR=413.419;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=641;QR=7353;RO=189;RPL=16;RPP=37.7539;RPPR=413.419;RPR=0;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=189;SRP=413.419;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:67:59,7:59:2305:7:283:-5.57493,0,-187.364 0/0:58:58,0:58:2275:0:0:0,-17.4597,-204.924 0/1:53:45,8:45:1727:8:317:-12.9394,0,-139.707 0/0:29:27,1:27:1046:1:41:0,-4.74373,-90.3326 dDocent_Contig_6026 50 . C T 4291 . AB=0.140575;ABP=354.227;AC=1;AF=0.125;AN=8;AO=44;CIGAR=1X2M1X;DP=313;DPB=313;DPRA=0;EPP=98.5551;EPPR=270.101;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0.918699;PAO=0;PQA=0;PQR=0;PRO=0;QA=1736;QR=4842;RO=123;RPL=44;RPP=98.5551;RPPR=270.101;RPR=0;RUN=1;SAF=44;SAP=98.5551;SAR=0;SRF=123;SRP=270.101;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:79:29,17,33:29:1134:17,33:674,1324:-100.36,-53.616,-141.727,0,-37.752,-83.2955 0|0:82:43,8,30:43:1685:8,30:315,1197:-85.6413,-72.6728,-208.808,0,-112.634,-129.517 1|0:70:14,16,39:14:554:16,39:627,1532:-127.755,-80.41,-121.191,-5.96202,0,-39.8264 0|0:82:37,3,42:37:1469:3,42:120,1630:-122.742,-123.994,-244.025,0,-111.042,-108.284 dDocent_Contig_6027 136 . N G 352.738 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=10;CIGAR=1X;DP=10;DPB=10;DPRA=0;EPP=24.725;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=40;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=409;QR=0;RO=0;RPL=10;RPP=24.725;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1:0,1:0:0:1:41:-3.74612,-0.30103,0 1/1:6:0,6:0:0:6:245:-20.5604,-1.80618,0 1/1:3:0,3:0:0:3:123:-10.4891,-0.90309,0 ./.:.:.:.:.:.:.:. dDocent_Contig_6029 9 . T A 8774.57 . AB=0.490536;ABP=3.50351;AC=4;AF=0.5;AN=8;AO=311;CIGAR=1X;DP=634;DPB=634;DPRA=0;EPP=678.338;EPPR=704.396;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=11945;QR=12420;RO=323;RPL=0;RPP=678.338;RPPR=704.396;RPR=311;RUN=1;SAF=311;SAP=678.338;SAR=0;SRF=323;SRP=704.396;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:217:100,117:100:3847:117:4471:-337.125,0,-281.008 0/1:175:94,81:94:3613:81:3123:-228.542,0,-272.606 0/1:161:88,73:88:3383:73:2806:-204.251,0,-256.14 0/1:81:41,40:41:1577:40:1545:-114.937,0,-117.815 dDocent_Contig_6030 7 . A T 1480.43 . AB=0.163793;ABP=572.46;AC=3;AF=0.375;AN=8;AO=98;CIGAR=1X;DP=625;DPB=625;DPRA=0;EPP=215.815;EPPR=1147.38;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3751;QR=20122;RO=527;RPL=0;RPP=215.815;RPPR=1147.38;RPR=98;RUN=1;SAF=98;SAP=215.815;SAR=0;SRF=527;SRP=1147.38;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:196:165,31:165:6303:31:1183:-47.7657,0,-508.192 0/1:253:208,45:208:7912:45:1719:-78.8086,0,-635.729 0/1:131:112,19:112:4299:19:733:-26.8665,0,-347.544 0/0:45:42,3:42:1608:3:116:0,-2.72864,-134.168 dDocent_Contig_6032 11 . T C 1270.24 . AB=0.152256;ABP=561.797;AC=4;AF=0.5;AN=8;AO=81;CIGAR=1X;DP=532;DPB=532;DPRA=0;EPP=178.9;EPPR=982.344;GTI=0;LEN=1;MEANALT=1;MQM=59.7284;MQMR=59.6497;NS=4;NUMALT=1;ODDS=0;PAIRED=0.703704;PAIREDR=0.891353;PAO=0;PQA=0;PQR=0;PRO=0;QA=3241;QR=18017;RO=451;RPL=0;RPP=178.9;RPPR=982.344;RPR=81;RUN=1;SAF=81;SAP=178.9;SAR=0;SRF=451;SRP=982.344;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:156:130,26:130:5175:26:1060:-48.7246,0,-418.475 0/1:142:118,24:118:4730:24:966:-44.4924,0,-382.763 0/1:158:134,24:134:5386:24:961:-39.2023,0,-435.098 0/1:76:69,7:69:2726:7:254:-0.316752,0,-222.571 dDocent_Contig_6033 48 . G A 112.521 . AB=0.179487;ABP=37.8095;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=138;DPB=138;DPRA=1.18182;EPP=18.2106;EPPR=285.302;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=267;QR=5109;RO=130;RPL=0;RPP=18.2106;RPPR=285.302;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=130;SRP=285.302;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:39:32,7:32:1271:7:267:-12.65,0,-102.915 0/0:21:21,0:21:831:0:0:0,-6.32163,-75.1018 0/0:34:34,0:34:1310:0:0:0,-10.235,-118.154 0/0:44:43,0:43:1697:0:0:0,-12.9443,-152.639 dDocent_Contig_6034 147 . G T 87.5254 . AB=0.266667;ABP=10.1038;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=127;DPB=127;DPRA=0.814286;EPP=16.0391;EPPR=265.758;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=242;QR=4724;RO=121;RPL=0;RPP=16.0391;RPPR=265.758;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=265.758;SRR=121;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:49:49,0:49:1916:0:0:0,-14.7505,-172.644 0/0:21:21,0:21:848:0:0:0,-6.32163,-76.6309 0/0:42:40,2:40:1552:2:80:0,-5.05147,-132.322 0/1:15:11,4:11:408:4:162:-10.4515,0,-32.5322 dDocent_Contig_6035 90 . A G 190.617 . AB=0.142105;ABP=214.397;AC=3;AF=0.375;AN=8;AO=27;CIGAR=1X;DP=264;DPB=264;DPRA=0.855856;EPP=61.6401;EPPR=517.649;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=875;QR=7968;RO=237;RPL=27;RPP=61.6401;RPPR=517.649;RPR=0;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=237;SRP=517.649;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:67:54,13:54:1775:13:436:-19.3924,0,-139.861 0/1:65:57,8:57:1924:8:248:-3.05667,0,-153.872 0/0:74:74,0:74:2497:0:0:0,-22.2762,-224.991 0/1:58:52,6:52:1772:6:191:-0.043555,0,-142.305 dDocent_Contig_6036 9 . T C 4412.29 . AB=0.662222;ABP=54.4404;AC=4;AF=0.5;AN=8;AO=149;CIGAR=1X;DP=225;DPB=225;DPRA=0;EPP=326.56;EPPR=168.042;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.986842;PAO=0;PQA=0;PQR=0;PRO=0;QA=5725;QR=2877;RO=76;RPL=0;RPP=326.56;RPPR=168.042;RPR=149;RUN=1;SAF=149;SAP=326.56;SAR=0;SRF=76;SRP=168.042;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:69:30,39:30:1126:39:1470:-111.8,0,-80.8657 0/1:52:22,30:22:839:30:1159:-88.9555,0,-60.1776 0/1:58:14,44:14:539:44:1700:-135.799,0,-31.3949 0/1:46:10,36:10:373:36:1396:-112.073,0,-20.0722 dDocent_Contig_6037 24 . A G 1084.41 . AB=0.28481;ABP=66.5602;AC=3;AF=0.375;AN=8;AO=46;CIGAR=1X;DP=178;DPB=178;DPRA=0;EPP=94.401;EPPR=287.473;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.956522;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1822;QR=5146;RO=131;RPL=2;RPP=86.2815;RPPR=287.473;RPR=44;RUN=1;SAF=45;SAP=94.401;SAR=1;SRF=131;SRP=287.473;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:61:54,6:54:2122:6:242:-3.8839,0,-172.921 0/1:66:39,27:39:1532:27:1062:-76.0033,0,-118.26 0/1:31:19,12:19:737:12:477:-33.9499,0,-57.3203 0/0:20:19,1:19:755:1:41:0,-1.92603,-64.1796 dDocent_Contig_6039 1 . N G 77.8076 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:82:-7.77968,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_6040 9 . T G 223.023 . AB=0.13253;ABP=197.71;AC=2;AF=0.25;AN=8;AO=24;CIGAR=1X;DP=247;DPB=247;DPRA=0;EPP=55.1256;EPPR=487.249;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.977578;PAO=0;PQA=0;PQR=0;PRO=0;QA=911;QR=8561;RO=223;RPL=0;RPP=55.1256;RPPR=487.249;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=223;SRP=487.249;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:105:93,12:93:3584:12:449:-9.14721,0,-291.071 0/0:58:57,1:57:2170:1:39:0,-13.5632,-191.625 0/1:61:51,10:51:1954:10:384:-16.5531,0,-157.739 0/0:23:22,1:22:853:1:39:0,-3.02713,-73.1958 dDocent_Contig_6042 44 . T A 4222.7 . AB=0.324272;ABP=141.145;AC=4;AF=0.5;AN=8;AO=167;CIGAR=1X;DP=515;DPB=515;DPRA=0;EPP=365.646;EPPR=750.022;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6486;QR=13603;RO=348;RPL=0;RPP=365.646;RPPR=750.022;RPR=167;RUN=1;SAF=167;SAP=365.646;SAR=0;SRF=348;SRP=758.683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:153:105,48:105:4161:48:1833:-119.131,0,-328.416 0/1:119:100,19:100:3864:19:764:-33.2591,0,-311.961 0/1:129:72,57:72:2825:57:2216:-160.792,0,-215.534 0/1:114:71,43:71:2753:43:1673:-116.487,0,-213.589 dDocent_Contig_6043 12 . C A 3267.77 . AB=0.482906;ABP=3.60421;AC=4;AF=0.5;AN=8;AO=113;CIGAR=1X;DP=234;DPB=234;DPRA=0;EPP=248.387;EPPR=265.758;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4483;QR=4693;RO=121;RPL=0;RPP=248.387;RPPR=265.758;RPR=113;RUN=1;SAF=113;SAP=248.387;SAR=0;SRF=121;SRP=265.758;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:74:29,45:29:1121:45:1760:-136.349,0,-78.8992 0/1:72:43,29:43:1648:29:1169:-83.8146,0,-126.883 0/1:55:29,26:29:1129:26:1033:-76.7084,0,-85.342 0/1:33:20,13:20:795:13:521:-37.3026,0,-61.936 dDocent_Contig_6044 30 . T C 133.227 . AB=0.205128;ABP=32.4644;AC=2;AF=0.25;AN=8;AO=8;CIGAR=1X;DP=112;DPB=112;DPRA=0.534247;EPP=20.3821;EPPR=228.843;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=308;QR=4144;RO=104;RPL=0;RPP=20.3821;RPPR=228.843;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=104;SRP=228.843;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:38:38,0:38:1515:0:0:0,-11.4391,-136.587 0/1:27:23,4:23:930:4:159:-6.56302,0,-75.8753 0/0:35:35,0:35:1375:0:0:0,-10.536,-124.008 0/1:12:8,4:8:324:4:149:-10.1576,0,-25.9165 dDocent_Contig_6045 13 . T C 179.424 . AB=0.333333;ABP=8.07707;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=54;DPB=54;DPRA=1.90909;EPP=18.2106;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=281;QR=1870;RO=47;RPL=0;RPP=18.2106;RPPR=105.07;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:14,7:14:559:7:281:-19.3403,0,-44.3317 0/0:9:9,0:9:363:0:0:0,-2.70927,-33.0343 0/0:13:13,0:13:512:0:0:0,-3.91339,-46.4213 0/0:11:11,0:11:436:0:0:0,-3.31133,-39.5916 dDocent_Contig_6046 167 . A T 1163.3 . AB=0.220126;ABP=219.365;AC=2;AF=0.25;AN=8;AO=78;CIGAR=1X;DP=564;DPB=564;DPRA=0.87957;EPP=172.385;EPPR=1056.17;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2662;QR=16619;RO=485;RPL=78;RPP=172.385;RPPR=1056.17;RPR=0;RUN=1;SAF=0;SAP=172.385;SAR=78;SRF=0;SRP=1056.17;SRR=485;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:155:155,0:155:5329:0:0:0,-46.6596,-479.775 0/1:132:104,28:104:3587:28:953:-46.3447,0,-283.319 0/1:186:143,42:143:4873:42:1434:-73.3829,0,-382.776 0/0:91:83,8:83:2830:8:275:0,-2.31214,-229.861 dDocent_Contig_6047 106 . N T 3629.7 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=129;CIGAR=2X1M1X;DP=130;DPB=130;DPRA=0;EPP=283.13;EPPR=0;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=0;NS=4;NUMALT=1;ODDS=4.33681e-19;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=4015;QR=0;RO=0;RPL=0;RPP=283.13;RPPR=0;RPR=129;RUN=1;SAF=0;SAP=283.13;SAR=129;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:44:0,43:0:0:43:1319:-118.757,-12.9443,0 1|1:40:0,40:0:0:40:1297:-117.026,-12.0412,0 1|1:26:0,26:0:0:26:796:-71.9286,-7.82678,0 1|1:20:0,20:0:0:20:603:-54.5602,-6.0206,0 dDocent_Contig_6048 25 . A G 2076.56 . AB=0.154195;ABP=919.116;AC=4;AF=0.5;AN=8;AO=136;CIGAR=1X;DP=882;DPB=882;DPRA=0;EPP=298.331;EPPR=1622.93;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5328;QR=29663;RO=746;RPL=0;RPP=298.331;RPPR=1622.93;RPR=136;RUN=1;SAF=136;SAP=298.331;SAR=0;SRF=746;SRP=1622.93;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:225:190,35:190:7562:35:1364:-55.2889,0,-612.468 0/1:251:209,42:209:8293:42:1656:-73.7085,0,-670.362 0/1:263:228,35:228:9078:35:1374:-44.7458,0,-737.318 0/1:143:119,24:119:4730:24:934:-41.311,0,-382.58 dDocent_Contig_6049 33 . C G 166.368 . AB=0.149425;ABP=95.8844;AC=3;AF=0.375;AN=8;AO=13;CIGAR=1X;DP=116;DPB=116;DPRA=1;EPP=31.2394;EPPR=226.672;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.846154;PAIREDR=0.990291;PAO=0;PQA=0;PQR=0;PRO=0;QA=522;QR=4070;RO=103;RPL=0;RPP=31.2394;RPPR=226.672;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=103;SRP=226.672;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:29:29,0:29:1157:0:0:0,-8.72987,-104.411 0/1:31:28,3:28:1130:3:122:-2.04056,0,-92.6506 0/1:32:25,7:25:995:7:278:-15.7567,0,-80.2155 0/1:24:21,3:21:788:3:122:-4.14777,0,-63.996 dDocent_Contig_6050 48 . C G 2380.5 . AB=0.289809;ABP=123.506;AC=3;AF=0.375;AN=8;AO=94;CIGAR=1M1X8M;DP=484;DPB=495.9;DPRA=0;EPP=207.129;EPPR=771.712;GTI=0;LEN=1;MEANALT=3.5;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.997175;PAO=0;PQA=0;PQR=0;PRO=0;QA=3778;QR=13894;RO=354;RPL=94;RPP=207.129;RPPR=771.712;RPR=0;RUN=1;SAF=94;SAP=207.129;SAR=0;SRF=354;SRP=771.712;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:170:162,2,3:162:6365:2,3:69,123:0,-43.1776,-566.074,-38.6042,-556.523,-561.224 0|1:135:85,15,34:85:3347:15,34:590,1357:-86.1801,-63.237,-334.061,0,-226.823,-265.118 0|1:115:67,10,37:67:2598:10,37:372,1493:-102.926,-92.6575,-303.061,0,-182.993,-202.296 0|1:64:40,3,20:40:1584:3,20:113,805:-54.3423,-57.1274,-186.595,0,-121.151,-124.388 dDocent_Contig_6051 26 . T G 657.797 . AB=0.0545455;ABP=97.8049;AC=0;AF=0;AN=8;AO=3;CIGAR=1X1M1X;DP=159;DPB=159;DPRA=1.44737;EPP=9.52472;EPPR=276.616;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.769841;PAO=0;PQA=0;PQR=0;PRO=0;QA=121;QR=4980;RO=126;RPL=0;RPP=9.52472;RPPR=276.616;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=126;SRP=276.616;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:38:37,0,1:37:1445:0,1:0,38:0,-11.1381,-129.918,-7.64187,-126.801,-126.5 0|0:55:33,3,19:33:1312:3,19:121,773:-53.8315,-53.7917,-160.899,0,-98.0362,-102.291 0|0:29:25,0,4:25:989:0,4:0,161:-6.1454,-13.6712,-95.0579,0,-81.7878,-80.5837 0|0:37:31,0,6:31:1234:0,6:0,244:-11.2007,-20.5326,-122.133,0,-102.006,-100.199 dDocent_Contig_6052 35 . G A 472.132 . AB=0.253012;ABP=46.9892;AC=2;AF=0.25;AN=8;AO=24;CIGAR=1X;DP=201;DPB=201;DPRA=0.884848;EPP=55.1256;EPPR=387.361;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=946;QR=6980;RO=177;RPL=0;RPP=55.1256;RPPR=387.361;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=177;SRP=387.361;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:55:55,0:55:2182:0:0:0,-16.5566,-196.552 0/0:63:60,3:60:2359:3:114:0,-8.3348,-201.834 0/1:42:26,16:26:1015:16:630:-44.3913,0,-78.9967 0/1:41:36,5:36:1424:5:202:-6.21985,0,-116.067 dDocent_Contig_6053 91 . C T 594.118 . AB=0.223684;ABP=103.812;AC=2;AF=0.25;AN=8;AO=46;CIGAR=1X;DP=314;DPB=314;DPRA=0;EPP=102.898;EPPR=584.965;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1625;QR=9430;RO=268;RPL=46;RPP=102.898;RPPR=584.965;RPR=0;RUN=1;SAF=46;SAP=102.898;SAR=0;SRF=268;SRP=584.965;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:97:89,8:89:3116:8:283:0,-3.38727,-254.855 0/1:109:87,22:87:3059:22:780:-37.7099,0,-242.727 0/0:65:61,4:61:2167:4:143:0,-6.3455,-182.077 0/1:43:31,12:31:1088:12:419:-25.0999,0,-85.2826 dDocent_Contig_6054 123 . A T 773.063 . AB=0.537037;ABP=3.6537;AC=1;AF=0.125;AN=8;AO=29;CIGAR=1X;DP=140;DPB=140;DPRA=1.88372;EPP=65.983;EPPR=244.044;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1055;QR=4057;RO=111;RPL=0;RPP=65.983;RPPR=244.044;RPR=29;RUN=1;SAF=0;SAP=65.983;SAR=29;SRF=0;SRP=244.044;SRR=111;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:53:53,0:53:1938:0:0:0,-15.9546,-174.687 0/1:54:25,29:25:919:29:1055:-79.0053,0,-66.775 0/0:18:18,0:18:664:0:0:0,-5.41854,-60.0942 0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5711 dDocent_Contig_6055 11 . C T 184.605 . AB=0.188679;ABP=47.6279;AC=1;AF=0.125;AN=8;AO=12;CIGAR=1X;DP=228;DPB=228;DPRA=0.784314;EPP=29.068;EPPR=472.048;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=476;QR=8725;RO=216;RPL=0;RPP=29.068;RPPR=472.048;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=216;SRP=472.048;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:53:43,10:43:1743:10:394:-19.8584,0,-141.127 0/0:68:68,0:68:2734:0:0:0,-20.47,-246.155 0/0:51:50,1:50:2020:1:41:0,-11.258,-177.887 0/0:56:55,1:55:2228:1:41:0,-12.7631,-196.581 dDocent_Contig_6056 110 . T C 43.7323 . AB=0.108333;ABP=322.796;AC=1;AF=0.125;AN=8;AO=44;CIGAR=1X;DP=663;DPB=663;DPRA=0;EPP=98.5551;EPPR=1342.81;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1446;QR=20368;RO=617;RPL=0;RPP=98.5551;RPPR=1342.81;RPR=44;RUN=1;SAF=0;SAP=98.5551;SAR=44;SRF=0;SRP=1342.81;SRR=617;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:240:213,26:213:6995:26:864:-5.77116,0,-557.377 0/0:168:166,2:166:5536:2:64:0,-44.4947,-492.325 0/0:126:117,8:117:3843:8:269:0,-13.1727,-321.577 0/0:129:121,8:121:3994:8:249:0,-16.1195,-336.96 dDocent_Contig_6057 9 . T C 153.504 . AB=0.15493;ABP=76.4428;AC=1;AF=0.125;AN=8;AO=11;CIGAR=1X;DP=294;DPB=294;DPRA=0.955157;EPP=26.8965;EPPR=617.537;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=423;QR=10853;RO=283;RPL=0;RPP=26.8965;RPPR=617.537;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=283;SRP=617.537;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:91:91,0:91:3502:0:0:0,-27.3937,-315.306 0/0:89:89,0:89:3406:0:0:0,-26.7917,-306.679 0/1:71:60,11:60:2291:11:423:-17.0494,0,-185.031 0/0:43:43,0:43:1654:0:0:0,-12.9443,-149.123 dDocent_Contig_6058 16 . T A 73.9233 . AB=0.104;ABP=173.271;AC=1;AF=0.125;AN=8;AO=28;CIGAR=1X;DP=447;DPB=447;DPRA=1.65333;EPP=63.8115;EPPR=912.857;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=0.997613;PAO=0;PQA=0;PQR=0;PRO=0;QA=1092;QR=16712;RO=419;RPL=0;RPP=63.8115;RPPR=912.857;RPR=28;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=419;SRP=912.857;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:125:112,13:112:4486:13:512:-8.79027,0,-366.037 0/0:127:118,9:118:4705:9:359:0,-5.5585,-390.679 0/0:120:114,6:114:4548:6:221:0,-15.8851,-389.007 0/0:75:75,0:75:2973:0:0:0,-22.5772,-267.654 dDocent_Contig_6059 40 . C T 9328.71 . AB=0.554758;ABP=17.5167;AC=4;AF=0.5;AN=8;AO=309;CIGAR=1X;DP=557;DPB=557;DPRA=0;EPP=639.701;EPPR=541.535;GTI=0;LEN=1;MEANALT=1;MQM=59.9644;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.983871;PAO=0;PQA=0;PQR=0;PRO=0;QA=12307;QR=9896;RO=248;RPL=4;RPP=639.701;RPPR=541.535;RPR=305;RUN=1;SAF=309;SAP=673.995;SAR=0;SRF=248;SRP=541.535;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:125:52,73:52:2069:73:2896:-223.111,0,-148.768 0/1:150:60,90:60:2398:90:3599:-278.782,0,-170.817 0/1:162:83,79:83:3331:79:3147:-234.532,0,-251.067 0/1:120:53,67:53:2098:67:2665:-203.844,0,-152.884 dDocent_Contig_6060 56 . G A 2260.07 . AB=0.22327;ABP=214.531;AC=4;AF=0.5;AN=8;AO=71;CIGAR=1X3M;DP=318;DPB=318;DPRA=0;EPP=157.185;EPPR=352.617;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=5.55112e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2795;QR=6077;RO=161;RPL=71;RPP=157.185;RPPR=352.617;RPR=0;RUN=1;SAF=71;SAP=157.185;SAR=0;SRF=161;SRP=352.617;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:93:46,22,25:46:1740:22,25:814,995:-68.0925,-15.3768,-151.366,0,-76.0565,-135.104 0|1:104:38,37,29:38:1458:37,29:1423,1139:-105.366,0,-108.53,-23.1253,-25.9884,-134.068 0|1:76:53,12,11:53:2002:12,11:462,428:-21.9747,0,-160.464,-2.75595,-128.903,-163.525 0|1:45:24,15,6:24:877:15,6:553,233:-37.9715,0,-67.1147,-26.0467,-52.4815,-95.8869 dDocent_Contig_6061 9 . T G 1577.59 . AB=0.247148;ABP=149.06;AC=3;AF=0.375;AN=8;AO=67;CIGAR=1X1M;DP=366;DPB=366;DPRA=0;EPP=148.499;EPPR=626.223;GTI=0;LEN=1;MEANALT=1.75;MQM=57.8358;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.925373;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2541;QR=11221;RO=287;RPL=0;RPP=148.499;RPPR=626.223;RPR=67;RUN=1;SAF=67;SAP=148.499;SAR=0;SRF=287;SRP=626.223;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:98:84,9,4:84:3286:9,4:354,148:-3.75012,0,-267.513,-18.7291,-259.897,-287.694 0|1:115:59,2,54:59:2293:2,54:78,2041:-149.518,-160.891,-348.713,0,-182.03,-172.162 0|0:103:101,0,2:101:3963:0,2:0,79:0,-30.404,-356.411,-25.2256,-351.538,-350.936 0|1:50:43,0,7:43:1679:0,7:0,273:-9.88651,-22.8308,-160.854,0,-138.413,-136.306 dDocent_Contig_6062 142 . C A 336.978 . AB=0.180952;ABP=95.8459;AC=1;AF=0.125;AN=8;AO=22;CIGAR=1X1M1X;DP=307;DPB=307;DPRA=0.485333;EPP=50.7827;EPPR=617.537;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=859;QR=10056;RO=283;RPL=0;RPP=50.7827;RPPR=617.537;RPR=22;RUN=1;SAF=0;SAP=50.7827;SAR=22;SRF=0;SRP=617.537;SRR=283;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:105:85,19:85:3094:19:738:-35.0957,0,-247.005 0|0:125:125,0:125:4392:0:0:0,-37.6287,-395.408 0|0:42:39,2:39:1414:2:80:0,-4.93051,-120.059 0|0:35:34,1:34:1156:1:41:0,-6.44148,-100.23 dDocent_Contig_6063 18 . T G 6164.36 . AB=0.0422961;ABP=605.309;AC=0;AF=0;AN=8;AO=14;CIGAR=1X3M;DP=406;DPB=406;DPRA=0;EPP=33.4109;EPPR=365.646;GTI=0;LEN=1;MEANALT=3.66667;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=551;QR=6534;RO=167;RPL=0;RPP=33.4109;RPPR=365.646;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=167;SRP=365.646;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:159:43,0,8,106:43:1650:0,8,106:0,317,4197:-332.456,-345.4,-480.805,-319.309,-454.714,-452.305,0,-135.407,-109.313,-103.498 0|0:98:57,4,1,36:57:2227:4,1,36:163,40,1421:-99.7425,-103.453,-285.32,-113.606,-283.229,-296.376,0,-169.611,-179.764,-172.223 0|0:75:36,9,0,29:36:1422:9,0,29:343,0,1172:-85.8167,-68.5213,-182.818,-96.6538,-185.527,-213.662,0,-88.8989,-117.033,-108.303 0|0:74:31,0,5,35:31:1235:0,5,35:0,194,1398:-105.818,-115.15,-216.846,-99.2148,-200.911,-199.406,0,-101.703,-85.7675,-91.1667 dDocent_Contig_6064 16 . T C 5109.48 . AB=0.333333;ABP=55.8495;AC=5;AF=0.625;AN=8;AO=166;CIGAR=1X;DP=317;DPB=317;DPRA=0;EPP=363.475;EPPR=330.903;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6667;QR=5999;RO=151;RPL=0;RPP=363.475;RPPR=330.903;RPR=166;RUN=1;SAF=166;SAP=363.475;SAR=0;SRF=151;SRP=330.903;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:63:48,15:48:1881:15:610:-36.2727,0,-150.532 1/1:98:5,93:5:203:93:3721:-316.248,-10.8479,0 0/1:91:45,46:45:1797:46:1865:-140.655,0,-134.547 0/1:65:53,12:53:2118:12:471:-23.1707,0,-171.234 dDocent_Contig_6065 16 . A G 818.676 . AB=0.320388;ABP=31.8719;AC=3;AF=0.375;AN=8;AO=36;CIGAR=1X1M1X;DP=156;DPB=156;DPRA=0;EPP=81.1833;EPPR=263.587;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1416;QR=4747;RO=120;RPL=0;RPP=81.1833;RPPR=263.587;RPR=36;RUN=1;SAF=36;SAP=81.1833;SAR=0;SRF=120;SRP=263.587;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:63:57,6:57:2241:6:236:-2.64759,0,-182.906 0|0:53:50,3:50:1997:3:114:0,-5.32367,-169.292 0|1:29:8,21:8:310:21:827:-66.0201,0,-19.5291 0|1:11:5,6:5:199:6:239:-18.574,0,-14.9774 dDocent_Contig_6066 32 . G A 920.844 . AB=0.202586;ABP=181.258;AC=2;AF=0.25;AN=8;AO=52;CIGAR=1X;DP=513;DPB=513;DPRA=0.64381;EPP=115.927;EPPR=1004.06;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2015;QR=18401;RO=461;RPL=0;RPP=115.927;RPPR=1004.06;RPR=52;RUN=1;SAF=52;SAP=115.927;SAR=0;SRF=461;SRP=1004.06;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:175:175,0:175:6992:0:0:0,-52.6802,-628.961 0/1:141:123,18:123:4853:18:711:-21.8723,0,-394.244 0/0:106:101,5:101:4051:5:185:0,-14.9046,-347.564 0/1:91:62,29:62:2505:29:1119:-73.61,0,-198.188 dDocent_Contig_6067 14 . T G 1879.68 . AB=0.0493506;ABP=682.14;AC=0;AF=0;AN=8;AO=19;CIGAR=1X3M1X3M1X;DP=662;DPB=662;DPRA=0;EPP=44.2683;EPPR=1086.58;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=4;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=748;QR=19809;RO=499;RPL=0;RPP=44.2683;RPPR=1086.58;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=499;SRP=1086.58;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:188:152,3,31,0,0:152:6022:3,31,0,0:120,1256,0,0:-57.8567,-93.728,-588.47,0,-485.805,-486.358,-103.613,-589.373,-495.69,-599.258,-103.613,-589.373,-495.69,-599.258,-599.258 0|0:197:152,16,22,2,5:152:6029:16,22,2,5:628,880,81,202:-26.7272,-20.8386,-512.29,0,-444.624,-489.649,-65.8043,-510.427,-489.593,-561.473,-55.8296,-500.453,-479.618,-545.421,-550.595 0|0:134:106,0,13,11,4:106:4235:0,13,11,4:0,522,446,158:-11.1021,-43.0113,-391.833,0,-348.821,-344.908,-6.22928,-355.053,-312.04,-351.741,-30.0114,-378.832,-335.82,-342.052,-377.628 0|0:143:89,0,38,0,13:89:3523:0,38,0,13:0,1534,0,510:-99.68,-126.472,-416.414,0,-289.958,-278.519,-126.472,-416.414,-289.958,-416.414,-84.5339,-374.476,-248.02,-374.476,-370.562 dDocent_Contig_6068 12 . T A 698.935 . AB=0.233577;ABP=87.4758;AC=2;AF=0.25;AN=8;AO=41;CIGAR=1X1M1X;DP=260;DPB=260;DPRA=0;EPP=92.0407;EPPR=478.563;GTI=0;LEN=1;MEANALT=1;MQM=57.7073;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.776256;PAO=0;PQA=0;PQR=0;PRO=0;QA=1645;QR=8686;RO=219;RPL=0;RPP=92.0407;RPPR=478.563;RPR=41;RUN=1;SAF=41;SAP=92.0407;SAR=0;SRF=219;SRP=478.563;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:66:60,6:60:2388:6:244:-2.47064,0,-195.21 0|1:71:45,26:45:1790:26:1038:-70.7854,0,-139.95 0|0:84:77,7:77:3034:7:282:0,-0.914157,-248.798 0|0:39:37,2:37:1474:2:81:0,-4.05444,-125.227 dDocent_Contig_6069 60 . T C 92.5492 . AB=0.166667;ABP=37.7539;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=161;DPB=161;DPRA=0.864;EPP=16.0391;EPPR=339.589;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=238;QR=5733;RO=155;RPL=6;RPP=16.0391;RPPR=339.589;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=155;SRP=339.589;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:65:65,0:65:2319:0:0:0,-19.5669,-208.905 0/0:36:36,0:36:1349:0:0:0,-10.8371,-121.69 0/0:24:24,0:24:924:0:0:0,-7.22472,-83.4674 0/1:36:30,6:30:1141:6:238:-10.9539,0,-92.1436 dDocent_Contig_6070 108 . T A 297.398 . AB=0.280702;ABP=26.8203;AC=2;AF=0.25;AN=8;AO=16;CIGAR=1X;DP=97;DPB=97;DPRA=1.425;EPP=37.7539;EPPR=178.9;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.5;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=551;QR=2808;RO=81;RPL=0;RPP=37.7539;RPPR=178.9;RPR=16;RUN=1;SAF=0;SAP=37.7539;SAR=16;SRF=0;SRP=178.9;SRR=81;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:11,12:11:384:12:414:-30.6663,0,-27.9713 0/1:34:30,4:30:1038:4:137:-2.43307,0,-83.4926 0/0:24:24,0:24:814:0:0:0,-7.22472,-73.5699 0/0:16:16,0:16:572:0:0:0,-4.81648,-51.8138 dDocent_Contig_6071 9 . T G 53.1053 . AB=0.125;ABP=61.6401;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=193;DPB=193;DPRA=0.993103;EPP=16.0391;EPPR=409.076;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.983957;PAO=0;PQA=0;PQR=0;PRO=0;QA=231;QR=7154;RO=187;RPL=0;RPP=16.0391;RPPR=409.076;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=187;SRP=409.076;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:48:42,6:42:1627:6:231:-6.70847,0,-132.243 0/0:53:53,0:53:2017:0:0:0,-15.9546,-181.771 0/0:41:41,0:41:1563:0:0:0,-12.3422,-140.94 0/0:51:51,0:51:1947:0:0:0,-15.3525,-175.471 dDocent_Contig_6072 37 . T C 13517.9 . AB=0.667697;ABP=161.051;AC=4;AF=0.5;AN=8;AO=432;CIGAR=1X;DP=647;DPB=647;DPRA=0;EPP=941.086;EPPR=469.877;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=17269;QR=8647;RO=215;RPL=0;RPP=941.086;RPPR=469.877;RPR=432;RUN=1;SAF=432;SAP=941.086;SAR=0;SRF=215;SRP=469.877;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:216:72,144:72:2904:144:5757:-452.896,0,-196.425 0/1:200:62,138:62:2499:138:5454:-430.483,0,-164.84 0/1:128:46,82:46:1834:82:3293:-257.871,0,-126.738 0/1:103:35,68:35:1410:68:2765:-217.936,0,-96.1454 dDocent_Contig_6073 130 . N C 63.5033 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=5X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=40;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=69;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. 1|1:2:0,2:0:0:2:69:-6.34924,-0.60206,0 dDocent_Contig_6074 145 . A T 2496.53 . AB=0.379032;ABP=34.5317;AC=4;AF=0.5;AN=8;AO=94;CIGAR=1X;DP=248;DPB=248;DPRA=0;EPP=207.129;EPPR=337.417;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3672;QR=6102;RO=154;RPL=0;RPP=207.129;RPPR=337.417;RPR=94;RUN=1;SAF=0;SAP=207.129;SAR=94;SRF=0;SRP=337.417;SRR=154;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:35:22,13:22:887:13:514:-36.0663,0,-69.6028 0/1:66:21,45:21:833:45:1724:-135.52,0,-55.4181 0/1:91:71,20:71:2785:20:791:-44.117,0,-223.372 0/1:56:40,16:40:1597:16:643:-41.3477,0,-127.102 dDocent_Contig_6075 19 . G A 146.142 . AB=0.153846;ABP=70.66;AC=2;AF=0.25;AN=8;AO=12;CIGAR=1X;DP=122;DPB=122;DPRA=4.18519;EPP=29.068;EPPR=241.872;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=489;QR=4399;RO=110;RPL=0;RPP=29.068;RPPR=241.872;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=110;SRP=241.872;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:48:46,2:46:1862:2:80:0,-6.85765,-160.19 0/1:27:22,5:22:881:5:205:-10.7072,0,-71.4712 0/1:38:33,5:33:1299:5:204:-7.30489,0,-105.734 0/0:9:9,0:9:357:0:0:0,-2.70927,-32.4925 dDocent_Contig_6076 7 . A G 1746.96 . AB=0.366667;ABP=35.4376;AC=4;AF=0.5;AN=8;AO=77;CIGAR=1X5M;DP=210;DPB=210;DPRA=0;EPP=170.214;EPPR=226.672;GTI=0;LEN=1;MEANALT=2.75;MQM=57.8182;MQMR=60;NS=4;NUMALT=4;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2528;QR=3970;RO=103;RPL=0;RPP=170.214;RPPR=226.672;RPR=77;RUN=1;SAF=77;SAP=170.214;SAR=0;SRF=103;SRP=226.672;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:80:44,0,11,0,24:44:1711:0,11,0,24:0,379,0,757:-47.564,-60.8094,-201.45,-30.0181,-170.671,-167.36,-60.8094,-201.45,-170.671,-201.45,0,-140.645,-109.872,-140.645,-133.421 0|1:68:22,5,6,0,35:22:840:5,6,0,35:182,193,0,1172:-88.1345,-79.8882,-147.316,-79.2024,-133.268,-146.328,-94.7571,-148.822,-148.134,-163.688,0,-54.0787,-53.3969,-68.9435,-58.4074 0|1:46:27,0,2,0,17:27:1028:0,2,0,17:0,76,0,572:-38.0075,-46.1353,-130.476,-39.8976,-124.242,-123.64,-46.1353,-130.476,-124.242,-130.476,0,-84.3172,-78.0842,-84.3172,-79.1997 0|1:16:10,0,0,4,1:10:391:0,0,4,1:0,0,140,27:-8.38794,-11.3982,-43.5743,-11.3982,-43.5743,-43.5743,0,-32.1939,-32.1939,-30.9898,-9.28473,-41.4527,-41.4527,-30.0756,-41.1517 dDocent_Contig_6077 8 . A T 275.517 . AB=0.123239;ABP=353.168;AC=4;AF=0.5;AN=8;AO=35;CIGAR=1X;DP=284;DPB=284;DPRA=0;EPP=79.0118;EPPR=543.707;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1322;QR=9521;RO=249;RPL=0;RPP=79.0118;RPPR=543.707;RPR=35;RUN=1;SAF=35;SAP=79.0118;SAR=0;SRF=249;SRP=543.707;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:125:108,17:108:4120:17:662:-22.2884,0,-333.26 0/1:46:40,6:40:1532:6:229:-7.12793,0,-124.306 0/1:78:70,8:70:2683:8:294:-3.32629,0,-218.177 0/1:35:31,4:31:1186:4:137:-2.12873,0,-96.5003 dDocent_Contig_6078 186 . C G 67.7205 . AB=0.152174;ABP=51.3492;AC=3;AF=0.375;AN=8;AO=7;CIGAR=1X;DP=65;DPB=65;DPRA=0.807018;EPP=18.2106;EPPR=128.956;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=275;QR=2190;RO=58;RPL=7;RPP=18.2106;RPPR=128.956;RPR=0;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=128.956;SRR=58;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:19:19,0:19:748:0:0:0,-5.71957,-67.6464 0/1:17:15,2:15:555:2:78:-2.28527,0,-45.1634 0/1:23:19,4:19:692:4:157:-7.58423,0,-55.6669 0/1:6:5,1:5:195:1:40:-2.1895,0,-16.1177 dDocent_Contig_6079 9 . T C 1147.48 . AB=0.235772;ABP=152.189;AC=4;AF=0.5;AN=8;AO=58;CIGAR=1X;DP=246;DPB=246;DPRA=0;EPP=128.956;EPPR=409.076;GTI=0;LEN=1;MEANALT=1.25;MQM=46.931;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2245;QR=7088;RO=187;RPL=0;RPP=128.956;RPPR=409.076;RPR=58;RUN=1;SAF=58;SAP=128.956;SAR=0;SRF=187;SRP=409.076;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:89:64,24:64:2428:24:926:-51.0063,0,-192.01 0/1:74:67,7:67:2555:7:271:-2.18812,0,-207.874 0/1:45:31,14:31:1164:14:542:-34.9943,0,-91.5149 0/1:38:25,13:25:941:13:506:-33.8917,0,-73.5619 dDocent_Contig_6080 121 . G T 25367.4 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=877;CIGAR=1X;DP=911;DPB=911;DPRA=0;EPP=1907.39;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=29312;QR=1123;RO=33;RPL=0;RPP=1907.39;RPPR=74.6689;RPR=877;RUN=1;SAF=0;SAP=1907.39;SAR=877;SRF=0;SRP=74.6689;SRR=33;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:226:6,220:6:210:220:7370:-644.167,-48.7903,0 1/1:228:17,210:17:593:210:7037:-579.761,-14.7211,0 1/1:276:8,268:8:250:268:9029:-789.865,-60.28,0 1/1:181:2,179:2:70:179:5876:-522.348,-47.839,0 dDocent_Contig_6083 66 . T C 126.584 . AB=0.153846;ABP=57.1301;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=124;DPB=124;DPRA=2.16667;EPP=20.3821;EPPR=254.901;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=326;QR=4544;RO=116;RPL=8;RPP=20.3821;RPPR=254.901;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=116;SRP=254.901;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:52:44,8:44:1731:8:326:-14.0563,0,-140.365 0/0:25:25,0:25:979:0:0:0,-7.52575,-88.4068 0/0:28:28,0:28:1103:0:0:0,-8.42884,-99.5541 0/0:19:19,0:19:731:0:0:0,-5.71957,-66.1118 dDocent_Contig_6084 9 . T G 124.311 . AB=0.155172;ABP=62.913;AC=1;AF=0.125;AN=8;AO=13;CIGAR=1X;DP=328;DPB=328;DPRA=1.12987;EPP=31.2394;EPPR=678.338;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=59.4051;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=0.913183;PAO=0;PQA=0;PQR=0;PRO=0;QA=503;QR=12014;RO=311;RPL=0;RPP=31.2394;RPPR=678.338;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=311;SRP=678.338;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:111:108,0:108:4173:0:0:0,-32.5112,-375.328 0/0:116:111,4:111:4291:4:156:0,-20.5353,-368.679 0/1:58:49,9:49:1889:9:347:-14.1301,0,-152.669 0/0:43:43,0:43:1661:0:0:0,-12.9443,-149.752 dDocent_Contig_6085 25 . C A 164.035 . AB=0.304348;ABP=10.6577;AC=1;AF=0.125;AN=8;AO=10;CIGAR=1X;DP=99;DPB=99;DPRA=2.09375;EPP=24.725;EPPR=196.271;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.988764;PAO=0;PQA=0;PQR=0;PRO=0;QA=396;QR=3552;RO=89;RPL=0;RPP=24.725;RPPR=196.271;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=89;SRP=196.271;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:44:41,3:41:1628:3:122:0,-1.87283,-135.385 0/0:22:22,0:22:888:0:0:0,-6.62266,-80.2283 0/1:23:16,7:16:633:7:274:-18.1025,0,-50.376 0/0:10:10,0:10:403:0:0:0,-3.0103,-36.6296 dDocent_Contig_6086 87 . A G 800.033 . AB=0.35;ABP=22.5536;AC=3;AF=0.375;AN=8;AO=35;CIGAR=1X;DP=115;DPB=115;DPRA=2.22222;EPP=79.0118;EPPR=176.728;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.5875;PAO=0;PQA=0;PQR=0;PRO=0;QA=1272;QR=2865;RO=80;RPL=35;RPP=79.0118;RPPR=176.728;RPR=0;RUN=1;SAF=35;SAP=79.0118;SAR=0;SRF=80;SRP=176.728;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:39:24,15:24:872:15:553:-38.3698,0,-67.0614 0/1:33:23,10:23:837:10:349:-21.8101,0,-65.719 0/1:28:18,10:18:609:10:370:-25.2214,0,-46.6915 0/0:15:15,0:15:547:0:0:0,-4.51545,-49.5673 dDocent_Contig_6089 60 . T A 17581.5 . AB=0.808696;ABP=193.382;AC=6;AF=0.75;AN=8;AO=543;CIGAR=1X;DP=607;DPB=607;DPRA=0;EPP=1182.12;EPPR=141.985;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=21154;QR=2562;RO=64;RPL=543;RPP=1182.12;RPPR=141.985;RPR=0;RUN=1;SAF=543;SAP=1182.12;SAR=0;SRF=64;SRP=141.985;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:188:10,178:10:396:178:6910:-585.638,-20.5966,0 1/1:189:10,179:10:403:179:6987:-591.928,-20.2648,0 0/1:131:27,104:27:1072:104:4081:-327.852,0,-57.335 0/1:99:17,82:17:691:82:3176:-256.131,0,-32.7163 dDocent_Contig_6090 40 . G A 92.0071 . AB=0.157895;ABP=41.6397;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=232;DPB=232;DPRA=0.587629;EPP=16.0391;EPPR=426.736;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.951327;PAO=0;PQA=0;PQR=0;PRO=0;QA=244;QR=8805;RO=226;RPL=0;RPP=16.0391;RPPR=493.763;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=218;SRP=426.736;SRR=8;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:72:72,0:72:2824:0:0:0,-21.6742,-254.281 0/0:61:61,0:61:2362:0:0:0,-18.3628,-212.751 0/0:61:61,0:61:2360:0:0:0,-18.3628,-212.558 0/1:38:32,6:32:1259:6:244:-10.8997,0,-102.139 dDocent_Contig_6091 108 . N G 3282.21 . AB=0.878788;ABP=44.1367;AC=8;AF=1;AN=8;AO=105;CIGAR=1X3M;DP=109;DPB=109;DPRA=0;EPP=231.015;EPPR=0;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=0;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=3617;QR=0;RO=0;RPL=0;RPP=231.015;RPPR=0;RPR=105;RUN=1;SAF=0;SAP=231.015;SAR=105;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:33:0,4,29:0:0:4,29:142,991:-92.3409,-80.7691,-79.565,-11.9251,0,-3.19522 1|1:55:0,0,55:0:0:0,55:0,1915:-172.627,-172.627,-172.627,-16.5567,-16.5567,0 1|1:9:0,0,9:0:0:0,9:0,312:-28.4157,-28.4157,-28.4157,-2.70927,-2.70927,0 1|1:12:0,0,12:0:0:0,12:0,399:-36.2287,-36.2287,-36.2287,-3.61236,-3.61236,0 dDocent_Contig_6096 41 . T C 12714.6 . AB=0.550781;ABP=20.2124;AC=4;AF=0.5;AN=8;AO=423;CIGAR=1X;DP=768;DPB=768;DPRA=0;EPP=921.543;EPPR=749.997;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=5.55112e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=16781;QR=13790;RO=344;RPL=0;RPP=921.543;RPPR=749.997;RPR=423;RUN=1;SAF=423;SAP=921.543;SAR=0;SRF=344;SRP=749.997;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:244:87,157:87:3472:157:6225:-486.539,0,-239.058 0/1:244:137,106:137:5504:106:4215:-305.769,0,-421.608 0/1:173:73,100:73:2944:100:3960:-304.312,0,-212.967 0/1:107:47,60:47:1870:60:2381:-182.235,0,-136.3 dDocent_Contig_6098 22 . T A 1913.75 . AB=0.190291;ABP=432.081;AC=4;AF=0.5;AN=8;AO=98;CIGAR=1X;DP=515;DPB=515;DPRA=0;EPP=215.815;EPPR=908.514;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3918;QR=16630;RO=417;RPL=0;RPP=215.815;RPPR=908.514;RPR=98;RUN=1;SAF=98;SAP=215.815;SAR=0;SRF=417;SRP=908.514;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:164:138,26:138:5504:26:1032:-43.8022,0,-445.802 0/1:134:101,33:101:4003:33:1320:-78.7228,0,-319.907 0/1:133:104,29:104:4185:29:1166:-65.1798,0,-336.553 0/1:84:74,10:74:2938:10:400:-11.0685,0,-239.226 dDocent_Contig_6099 8 . A G 1508.93 . AB=0.293578;ABP=83.6934;AC=3;AF=0.375;AN=8;AO=66;CIGAR=1X;DP=248;DPB=248;DPRA=0;EPP=146.327;EPPR=398.218;GTI=0;LEN=1;MEANALT=1;MQM=59.9091;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2505;QR=6907;RO=182;RPL=0;RPP=146.327;RPPR=398.218;RPR=66;RUN=1;SAF=66;SAP=146.327;SAR=0;SRF=182;SRP=398.218;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:96:75,21:75:2826:21:808:-44.146,0,-225.63 0/1:72:53,19:53:2016:19:730:-44.3505,0,-160.007 0/0:30:28,2:28:1068:2:50:0,-4.28417,-91.6788 0/1:50:26,24:26:997:24:917:-67.7949,0,-74.99 dDocent_Contig_6100 15 . C G 12368.7 . AB=0.0670391;ABP=294.461;AC=0;AF=0;AN=8;AO=12;CIGAR=1X3M1X;DP=547;DPB=547;DPRA=0;EPP=29.068;EPPR=304.845;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=475;QR=5448;RO=139;RPL=0;RPP=29.068;RPPR=304.845;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=139;SRP=304.845;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:151:40,0,111:40:1551:0,111:0,4383:-348.979,-361.02,-488.435,0,-127.804,-94.39 0|0:179:45,12,122:45:1783:12,122:475,4831:-384.023,-358.475,-501.609,0,-107.653,-110.021 0|0:152:27,0,125:27:1051:0,125:0,4908:-395.864,-403.992,-490.36,0,-86.7577,-49.1289 0|0:65:27,0,38:27:1063:0,38:0,1497:-115.403,-123.531,-210.974,0,-87.836,-76.3969 dDocent_Contig_6101 39 . T G 1458.04 . AB=0.172917;ABP=449.049;AC=4;AF=0.5;AN=8;AO=83;CIGAR=2X2M1X2M1X;DP=480;DPB=480;DPRA=0;EPP=183.243;EPPR=804.284;GTI=0;LEN=1;MEANALT=2.75;MQM=57.4458;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.86747;PAIREDR=0.99729;PAO=0;PQA=0;PQR=0;PRO=0;QA=3245;QR=14408;RO=369;RPL=0;RPP=183.243;RPPR=804.284;RPR=83;RUN=1;SAF=83;SAP=183.243;SAR=0;SRF=369;SRP=804.284;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:180:156,18,5:156:6087:18,5:687,204:-8.31371,0,-494.9,-38.4362,-483.487,-537.275 0|1:98:72,17,9:72:2839:17,9:669,365:-32.7369,0,-228.447,-24.3054,-203.463,-255.174 0|1:132:87,39,4:87:3381:39,4:1536,160:-99.3773,0,-266.057,-112.386,-264.617,-388.988 0|1:70:54,9,7:54:2101:9,7:353,275:-12.7744,0,-169.937,-6.41192,-150.028,-176.952 dDocent_Contig_6102 18 . A G 94.9619 . AB=0.125;ABP=100.727;AC=1;AF=0.125;AN=8;AO=13;CIGAR=1X;DP=339;DPB=339;DPRA=0.491484;EPP=31.2394;EPPR=708.739;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=507;QR=12767;RO=325;RPL=0;RPP=31.2394;RPPR=708.739;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=325;SRP=708.739;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:137:136,0:136:5274:0:0:0,-40.9401,-474.468 0/0:76:74,2:74:2936:2:80:0,-15.2865,-256.766 0/1:80:70,10:70:2772:10:388:-11.1952,0,-225.527 0/0:46:45,1:45:1785:1:39:0,-9.95081,-156.975 dDocent_Contig_6103 7 . A T 220.572 . AB=0.234043;ABP=31.8863;AC=1;AF=0.125;AN=8;AO=11;CIGAR=1X;DP=81;DPB=81;DPRA=4.14706;EPP=26.8965;EPPR=155.013;GTI=0;LEN=1;MEANALT=1;MQM=51;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=416;QR=2676;RO=70;RPL=0;RPP=26.8965;RPPR=155.013;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=70;SRP=155.013;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:47:36,11:36:1373:11:416:-23.4551,0,-109.707 0/0:13:13,0:13:490:0:0:0,-3.91339,-44.444 0/0:8:8,0:8:309:0:0:0,-2.40824,-28.1731 0/0:13:13,0:13:504:0:0:0,-3.91339,-45.7091 dDocent_Contig_6104 24 . C T 4514.93 . AB=0.14878;ABP=1320.89;AC=4;AF=0.5;AN=8;AO=183;CIGAR=1X6M;DP=1230;DPB=1230;DPRA=0;EPP=400.39;EPPR=1056.17;GTI=0;LEN=1;MEANALT=10.75;MQM=60;MQMR=60;NS=4;NUMALT=6;ODDS=0;PAIRED=1;PAIREDR=0.993814;PAO=0;PQA=0;PQR=0;PRO=0;QA=6757;QR=18799;RO=485;RPL=0;RPP=400.39;RPPR=1056.17;RPR=183;RUN=1;SAF=183;SAP=400.39;SAR=0;SRF=485;SRP=1056.17;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:381:133,7,42,57,35,48,36:133:5157:7,42,57,35,48,36:272,1638,1991,1301,1770,1415:-121.871,-139.556,-561.116,-27.2622,-428.58,-438.289,0,-401.314,-289.023,-406.507,-55.4463,-456.763,-344.471,-317.206,-468.579,-17.1764,-418.493,-306.201,-278.936,-334.384,-426.395,-45.5251,-446.843,-334.551,-307.286,-362.734,-324.464,-458.358 0|1:437:209,21,23,74,11,59,27:209:8117:21,23,74,11,59,27:830,877,2648,421,2224,1080:-152.955,-147.564,-808.188,-143.929,-742.57,-803.95,0,-598.637,-595.001,-644.665,-181.321,-779.961,-776.325,-632.392,-844.954,-33.6298,-632.271,-628.635,-484.703,-666.027,-682.815,-126.903,-725.545,-721.909,-577.976,-759.301,-611.611,-785.722 0|1:269:91,22,25,37,15,55,17:91:3506:22,25,37,15,55,17:848,980,1338,544,1995,676:-135.465,-93.2236,-374.46,-82.2659,-300.492,-362.6,-53.6574,-271.881,-260.924,-330.377,-118.456,-336.68,-325.723,-297.113,-401.799,0,-218.224,-207.267,-178.658,-243.456,-271.301,-107.2,-325.425,-314.468,-285.858,-350.657,-232.2,-389.942 0|1:143:52,4,12,22,18,21,6:52:2019:4,12,22,18,21,6:155,447,788,687,768,242:-48.5971,-51.5166,-216.205,-27.6682,-180.827,-189.949,0,-153.158,-129.31,-159.269,-7.88724,-161.048,-137.199,-109.53,-168.363,-1.50895,-154.668,-130.82,-103.151,-111.04,-161.08,-44.3006,-197.46,-173.612,-145.942,-153.832,-147.452,-208.388 dDocent_Contig_6106 1 . N G 75.9266 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=80;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:80:-7.59157,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_6107 43 . T C 167.491 . AB=0.228571;ABP=25.4075;AC=1;AF=0.125;AN=8;AO=31;CIGAR=1X;DP=343;DPB=343;DPRA=0;EPP=70.3259;EPPR=644.042;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.993569;PAO=0;PQA=0;PQR=0;PRO=0;QA=1179;QR=11343;RO=311;RPL=0;RPP=70.3259;RPPR=644.042;RPR=31;RUN=1;SAF=31;SAP=70.3259;SAR=0;SRF=311;SRP=678.338;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:132:120,12:120:4388:12:427:0,-0.991202,-356.283 0/0:91:84,7:84:3080:7:278:0,-2.00357,-251.986 0/0:85:80,4:80:2886:4:156:0,-11.2453,-245.517 0/1:35:27,8:27:989:8:318:-18.448,0,-78.7801 dDocent_Contig_6108 83 . C T 199.758 . AB=0.218182;ABP=40.9518;AC=2;AF=0.25;AN=8;AO=14;CIGAR=1X;DP=102;DPB=102;DPRA=1.55556;EPP=33.4109;EPPR=194.1;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.977273;PAO=0;PQA=0;PQR=0;PRO=0;QA=486;QR=3168;RO=88;RPL=14;RPP=33.4109;RPPR=194.1;RPR=0;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=88;SRP=194.1;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:29:27,2:27:974:2:67:0,-2.36682,-81.6111 0/1:23:14,9:14:507:9:314:-21.6732,0,-39.0442 0/1:32:29,3:29:1027:3:105:-0.162928,0,-83.099 0/0:18:18,0:18:660:0:0:0,-5.41854,-59.7335 dDocent_Contig_6109 60 . C T 32.9384 . AB=0.129032;ABP=40.0654;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=201;DPB=201;DPRA=0.584475;EPP=16.0391;EPPR=426.447;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=224;QR=7795;RO=195;RPL=6;RPP=16.0391;RPPR=426.447;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=195;SRP=426.447;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:48:47,1:47:1875:1:38:0,-10.6522,-165.16 0/0:73:73,0:73:2931:0:0:0,-21.9752,-263.878 0/0:49:48,1:48:1897:1:31:0,-11.651,-167.84 0/1:31:27,4:27:1092:4:155:-4.99259,0,-89.234 dDocent_Contig_6110 107 . N T 222.569 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=7;CIGAR=1X3M1X;DP=8;DPB=8;DPRA=0;EPP=18.2106;EPPR=0;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=238;QR=0;RO=0;RPL=0;RPP=18.2106;RPPR=0;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:4:0,3:0:0:3:102:-9.37948,-0.90309,0 1|1:4:0,4:0:0:4:136:-12.576,-1.20412,0 .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. dDocent_Contig_6111 12 . G A 27021.9 . AB=0.443764;ABP=38.9119;AC=8;AF=1;AN=8;AO=580;CIGAR=2X1M;DP=1307;DPB=1307;DPRA=0;EPP=1262.46;EPPR=489.42;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=22777;QR=8772;RO=224;RPL=0;RPP=1262.46;RPPR=489.42;RPR=580;RUN=1;SAF=580;SAP=1262.46;SAR=0;SRF=224;SRP=489.42;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:378:59,172,146:59:2310:172,146:6780,5730:-821.335,-281.298,-419.453,-367.867,0,-513.849 1|1:398:81,132,184:81:3162:132,184:5186,7201:-734.268,-332.12,-552.299,-166.618,0,-371.144 1|1:290:62,97,131:62:2451:97,131:3856,5140:-519.806,-220.996,-393.491,-115.78,0,-278.039 1|1:241:22,100,119:22:849:100,119:3930,4706:-634.181,-317.566,-357.176,-253.531,0,-287.422 dDocent_Contig_6112 24 . T A 56.8687 . AB=0.103448;ABP=121.842;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X;DP=358;DPB=358;DPRA=0.9631;EPP=22.5536;EPPR=760.854;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=369;QR=13934;RO=349;RPL=0;RPP=22.5536;RPPR=760.854;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=349;SRP=760.854;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:133:133,0:133:5353:0:0:0,-40.037,-481.601 0/0:88:88,0:88:3485:0:0:0,-26.4906,-313.68 0/1:87:78,9:78:3090:9:369:-7.38584,0,-251.993 0/0:50:50,0:50:2006:0:0:0,-15.0515,-180.723 dDocent_Contig_6113 98 . N G 70.4499 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=70;QR=0;RO=0;RPL=3;RPP=9.52472;RPPR=0;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:52:-4.93894,-0.60206,0 ./.:.:.:.:.:.:.:. 1/1:1:0,1:0:0:1:18:-1.79997,-0.30103,0 ./.:.:.:.:.:.:.:. dDocent_Contig_6114 78 . T C 125.101 . AB=0.190476;ABP=37.9607;AC=2;AF=0.25;AN=8;AO=8;CIGAR=1X;DP=70;DPB=70;DPRA=1.5;EPP=20.3821;EPPR=137.642;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=309;QR=2350;RO=62;RPL=8;RPP=20.3821;RPPR=137.642;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:35:29,6:29:1083:6:234:-10.8951,0,-87.2295 0/0:16:16,0:16:619:0:0:0,-4.81648,-56.05 0/1:7:5,2:5:195:2:75:-5.01289,0,-15.817 0/0:12:12,0:12:453:0:0:0,-3.61236,-41.1177 dDocent_Contig_6116 8 . A G 49.0432 . AB=0.214286;ABP=12.937;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=86;DPB=86;DPRA=0.583333;EPP=9.52472;EPPR=183.243;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.975904;PAO=0;PQA=0;PQR=0;PRO=0;QA=116;QR=3148;RO=83;RPL=0;RPP=9.52472;RPPR=183.243;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=83;SRP=183.243;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:29:29,0:29:1081:0:0:0,-8.72987,-97.5924 0/1:14:11,3:11:426:3:116:-6.60328,0,-34.4803 0/0:26:26,0:26:989:0:0:0,-7.82678,-89.3171 0/0:17:17,0:17:652:0:0:0,-5.11751,-59.0167 dDocent_Contig_6117 9 . G A 360.562 . AB=0.243243;ABP=45.3834;AC=2;AF=0.25;AN=8;AO=19;CIGAR=1X;DP=148;DPB=148;DPRA=1;EPP=44.2683;EPPR=283.13;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.984496;PAO=0;PQA=0;PQR=0;PRO=0;QA=717;QR=4946;RO=129;RPL=0;RPP=44.2683;RPPR=283.13;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=129;SRP=283.13;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:51:38,13:38:1479:13:487:-28.8193,0,-118.03 0/0:37:37,0:37:1421:0:0:0,-11.1381,-128.168 0/0:37:36,1:36:1355:1:39:0,-7.24155,-118.338 0/1:23:18,5:18:691:5:191:-10.6348,0,-55.5981 dDocent_Contig_6118 21 . C T 274.631 . AB=0.434783;ABP=3.86001;AC=1;AF=0.125;AN=8;AO=13;CIGAR=1X;DP=120;DPB=120;DPRA=1.88889;EPP=31.2394;EPPR=235.358;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=519;QR=4250;RO=107;RPL=0;RPP=31.2394;RPPR=235.358;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=107;SRP=235.358;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:46:45,1:45:1810:1:40:0,-9.8517,-159.115 0/1:23:13,10:13:499:10:397:-29.162,0,-38.3253 0/0:33:31,2:31:1223:2:82:0,-2.15431,-102.569 0/0:18:18,0:18:718:0:0:0,-5.41854,-64.9429 dDocent_Contig_6119 110 . C T 35.7971 . AB=0.15625;ABP=35.8538;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X2M;DP=86;DPB=86;DPRA=1.77778;EPP=13.8677;EPPR=170.214;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=156;QR=2529;RO=77;RPL=0;RPP=13.8677;RPPR=170.214;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=170.214;SRR=77;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:32:25,2,5:25:814:2,5:70,156:-4.97753,-6.79696,-71.9145,0,-59.9884,-64.1805 0|0:14:14,0,0:14:475:0,0:0,0:0,-4.21442,-43.0751,-4.21442,-43.0751,-43.0751 0|0:24:23,1,0:23:763:1,0:34,0:0,-3.82581,-65.5811,-6.92369,-65.8821,-68.6404 0|0:16:15,0,0:15:477:0,0:0,0:0,-4.51545,-43.1106,-4.51545,-43.1106,-43.1106 dDocent_Contig_6120 39 . T A 12004.1 . AB=0.663248;ABP=138.425;AC=4;AF=0.5;AN=8;AO=388;CIGAR=1X;DP=585;DPB=585;DPRA=0;EPP=845.542;EPPR=428.619;GTI=0;LEN=1;MEANALT=1.25;MQM=59.9948;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=15374;QR=7765;RO=196;RPL=0;RPP=845.542;RPPR=428.619;RPR=388;RUN=1;SAF=388;SAP=845.542;SAR=0;SRF=196;SRP=428.619;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:172:31,140:31:1235:140:5545:-447.323,0,-59.8493 0/1:257:104,153:104:4090:153:6094:-470.878,0,-290.705 0/1:90:38,52:38:1516:52:2058:-158.319,0,-109.588 0/1:66:23,43:23:924:43:1677:-131.289,0,-63.5948 dDocent_Contig_6121 13 . G A 838.851 . AB=0.130621;ABP=556.457;AC=4;AF=0.5;AN=8;AO=61;CIGAR=3M1X10M;DP=467;DPB=467.857;DPRA=0;EPP=135.47;EPPR=780.397;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=4;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2418;QR=13890;RO=358;RPL=0;RPP=135.47;RPPR=780.397;RPR=61;RUN=1;SAF=61;SAP=135.47;SAR=0;SRF=358;SRP=780.397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:194:158,0,12,17,6:158:6120:0,12,17,6:0,433,664,241:-7.02249,-54.5852,-557.33,-19.2633,-521.999,-518.387,0,-502.752,-467.421,-497.634,-34.7227,-537.471,-502.14,-482.893,-535.665 0|1:162:114,0,0,29,19:114:4445:0,0,29,19:0,0,1146,761:-59.9741,-94.2915,-459.65,-94.2915,-459.65,-459.65,0,-365.354,-365.354,-356.624,-31.5998,-396.959,-396.959,-302.663,-391.239 0|1:75:59,0,0,11,5:59:2272:0,0,11,5:0,0,444,185:-18.8637,-36.6245,-223.155,-36.6245,-223.155,-223.155,0,-186.551,-186.551,-183.239,-21.5051,-208.026,-208.026,-171.422,-206.521 0|1:36:27,2,0,4,2:27:1053:2,0,4,2:82,0,164,82:-5.42269,-6.77727,-92.7302,-13.5505,-93.3322,-100.102,0,-79.7932,-86.5628,-85.3587,-6.77727,-86.5628,-93.3322,-79.7932,-92.7302 dDocent_Contig_6122 18 . A G 278.783 . AB=0.191781;ABP=63.2463;AC=1;AF=0.125;AN=8;AO=30;CIGAR=1X;DP=511;DPB=511;DPRA=0;EPP=68.1545;EPPR=1047.49;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.997921;PAO=0;PQA=0;PQR=0;PRO=0;QA=1193;QR=19092;RO=481;RPL=0;RPP=68.1545;RPPR=1047.49;RPR=30;RUN=1;SAF=30;SAP=68.1545;SAR=0;SRF=481;SRP=1047.49;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:216:213,3:213:8454:3:122:0,-53.65,-749.058 0/1:73:59,14:59:2345:14:569:-29.5773,0,-189.242 0/0:123:115,8:115:4553:8:317:0,-8.13208,-380.826 0/0:99:94,5:94:3740:5:185:0,-12.7964,-319.62 dDocent_Contig_6125 98 . N C 461.326 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=15;CIGAR=1X;DP=15;DPB=15;DPRA=0;EPP=35.5824;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=502;QR=0;RO=0;RPL=15;RPP=35.5824;RPPR=0;RPR=0;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:10:0,10:0:0:10:338:-30.7482,-3.0103,0 ./.:.:.:.:.:.:.:. 1/1:5:0,5:0:0:5:164:-15.0833,-1.50515,0 ./.:.:.:.:.:.:.:. dDocent_Contig_6126 148 . A G 96.8662 . AB=0.112245;ABP=130.994;AC=1;AF=0.125;AN=8;AO=12;CIGAR=1X;DP=246;DPB=246;DPRA=1.5625;EPP=29.068;EPPR=508.963;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=488;QR=9069;RO=233;RPL=0;RPP=29.068;RPPR=508.963;RPR=12;RUN=1;SAF=0;SAP=29.068;SAR=12;SRF=0;SRP=508.963;SRR=233;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:98:87,11:87:3390:11:447:-11.0846,0,-275.655 0/0:79:78,0:78:3019:0:0:0,-23.4803,-271.684 0/0:52:51,1:51:1985:1:41:0,-11.559,-174.754 0/0:17:17,0:17:675:0:0:0,-5.11751,-61.0768 dDocent_Contig_6128 172 . T A 54.8075 . AB=0.111111;ABP=85.7675;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=190;DPB=190;DPRA=1.48819;EPP=18.2106;EPPR=400.39;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=283;QR=7211;RO=183;RPL=7;RPP=18.2106;RPPR=400.39;RPR=0;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=400.39;SRR=183;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:63:56,7:56:2170:7:283:-6.87869,0,-176.521 0/0:40:40,0:40:1604:0:0:0,-12.0412,-144.593 0/0:56:56,0:56:2217:0:0:0,-16.8577,-199.7 0/0:31:31,0:31:1220:0:0:0,-9.33193,-110.072 dDocent_Contig_6129 17 . G C 1408.81 . AB=0.215947;ABP=213.961;AC=2;AF=0.25;AN=8;AO=71;CIGAR=1X;DP=780;DPB=780;DPRA=0.65526;EPP=157.185;EPPR=1542.58;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.9873;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2850;QR=28198;RO=709;RPL=0;RPP=157.185;RPPR=1542.58;RPR=71;RUN=1;SAF=71;SAP=157.185;SAR=0;SRF=709;SRP=1542.58;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:263:263,0:263:10460:0:0:0,-79.1709,-940.724 0/0:216:210,6:210:8383:6:246:0,-42.5024,-731.46 0/1:164:117,47:117:4692:47:1881:-120.126,0,-372.796 0/1:137:119,18:119:4663:18:723:-24.153,0,-378.358 dDocent_Contig_6130 34 . T A 105.903 . AB=0.117021;ABP=122.765;AC=1;AF=0.125;AN=8;AO=14;CIGAR=1X;DP=251;DPB=251;DPRA=1.24107;EPP=33.4109;EPPR=517.649;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=564;QR=9477;RO=237;RPL=0;RPP=33.4109;RPPR=517.649;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=237;SRP=517.649;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:82:82,0:82:3265:0:0:0,-24.6845,-293.92 0/1:94:83,11:83:3366:11:447:-12.2893,0,-274.67 0/0:45:42,3:42:1686:3:117:0,-2.63644,-141.049 0/0:30:30,0:30:1160:0:0:0,-9.0309,-104.671 dDocent_Contig_6131 82 . C A 470.353 . AB=0.195402;ABP=143.233;AC=4;AF=0.5;AN=8;AO=34;CIGAR=1X;DP=174;DPB=174;DPRA=0;EPP=76.8404;EPPR=307.016;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1172;QR=4812;RO=140;RPL=34;RPP=76.8404;RPPR=307.016;RPR=0;RUN=1;SAF=34;SAP=76.8404;SAR=0;SRF=140;SRP=307.016;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:85:71,14:71:2437:14:491:-18.935,0,-194.006 0/1:61:48,13:48:1664:13:441:-21.6526,0,-131.688 0/1:16:12,4:12:404:4:141:-8.22062,0,-31.868 0/1:12:9,3:9:307:3:99:-5.62508,0,-24.3492 dDocent_Contig_6132 42 . A T 63.0429 . AB=0.166667;ABP=31.9633;AC=2;AF=0.25;AN=8;AO=5;CIGAR=1X;DP=75;DPB=75;DPRA=0.666667;EPP=13.8677;EPPR=155.013;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.971429;PAO=0;PQA=0;PQR=0;PRO=0;QA=199;QR=2801;RO=70;RPL=0;RPP=13.8677;RPPR=155.013;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=70;SRP=155.013;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:28:28,0:28:1125:0:0:0,-8.42884,-101.532 0/0:17:17,0:17:667:0:0:0,-5.11751,-60.3559 0/1:18:16,2:16:644:2:82:-2.36114,0,-52.8761 0/1:12:9,3:9:365:3:117:-7.29622,0,-29.6027 dDocent_Contig_6133 173 . A C 532.612 . AB=0.404255;ABP=6.75262;AC=1;AF=0.125;AN=8;AO=19;CIGAR=1X;DP=141;DPB=141;DPRA=1.5;EPP=44.2683;EPPR=267.93;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.97541;PAO=0;PQA=0;PQR=0;PRO=0;QA=761;QR=4851;RO=122;RPL=19;RPP=44.2683;RPPR=267.93;RPR=0;RUN=1;SAF=0;SAP=44.2683;SAR=19;SRF=0;SRP=267.93;SRR=122;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:47:28,19:28:1120:19:761:-54.6591,0,-86.9376 0/0:35:35,0:35:1358:0:0:0,-10.536,-122.479 0/0:30:30,0:30:1212:0:0:0,-9.0309,-109.352 0/0:29:29,0:29:1161:0:0:0,-8.72987,-104.771 dDocent_Contig_6134 42 . G A 286.732 . AB=0.175258;ABP=91.8616;AC=1;AF=0.125;AN=8;AO=17;CIGAR=1X;DP=222;DPB=222;DPRA=2.328;EPP=39.9253;EPPR=448.162;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=655;QR=8175;RO=205;RPL=0;RPP=39.9253;RPPR=448.162;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=205;SRP=448.162;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:97:80,17:80:3207:17:655:-30.0711,0,-259.495 0/0:56:56,0:56:2230:0:0:0,-16.8577,-200.868 0/0:43:43,0:43:1720:0:0:0,-12.9443,-155.024 0/0:26:26,0:26:1018:0:0:0,-7.82678,-91.9124 dDocent_Contig_6135 127 . A C 181.379 . AB=0.164706;ABP=86.0116;AC=1;AF=0.125;AN=8;AO=19;CIGAR=1X;DP=276;DPB=276;DPRA=1.28099;EPP=44.2683;EPPR=561.079;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=686;QR=9274;RO=257;RPL=0;RPP=44.2683;RPPR=561.079;RPR=19;RUN=1;SAF=0;SAP=44.2683;SAR=19;SRF=0;SRP=561.079;SRR=257;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:53:53,0:53:1935:0:0:0,-15.9546,-174.418 0/0:68:68,0:68:2476:0:0:0,-20.47,-223.083 0/1:85:71,14:71:2539:14:501:-19.8369,0,-203.161 0/0:70:65,5:65:2324:5:185:0,-4.06208,-192.397 dDocent_Contig_6136 107 . N G 71.8653 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=77;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:77:-7.18599,-0.90309,0 dDocent_Contig_6137 9 . G C 1795.07 . AB=0.323144;ABP=65.2244;AC=4;AF=0.5;AN=8;AO=74;CIGAR=1X;DP=229;DPB=229;DPRA=0;EPP=163.699;EPPR=339.589;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=0.986486;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2828;QR=5930;RO=155;RPL=0;RPP=163.699;RPPR=339.589;RPR=74;RUN=1;SAF=74;SAP=163.699;SAR=0;SRF=155;SRP=339.589;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:72:63,9:63:2400:9:350:-10.1872,0,-194.536 0/1:58:41,17:41:1570:17:648:-41.1943,0,-124.109 0/1:44:20,24:20:765:24:910:-68.9663,0,-55.9311 0/1:55:31,24:31:1195:24:920:-66.5572,0,-91.2868 dDocent_Contig_6138 69 . C T 198.496 . AB=0.333333;ABP=8.80089;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=76;DPB=76;DPRA=1.38462;EPP=20.3821;EPPR=148.499;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=313;QR=2499;RO=67;RPL=8;RPP=20.3821;RPPR=148.499;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=67;SRP=148.499;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:15,8:15:529:8:313:-21.2475,0,-40.6428 0/0:16:16,0:16:620:0:0:0,-4.81648,-56.1377 0/0:21:21,0:21:779:0:0:0,-6.32163,-70.423 0/0:15:15,0:15:571:0:0:0,-4.51545,-51.7284 dDocent_Contig_6139 61 . G C 123.973 . AB=0.155172;ABP=62.913;AC=2;AF=0.25;AN=8;AO=9;CIGAR=1X;DP=111;DPB=111;DPRA=1.09434;EPP=22.5536;EPPR=224.5;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.8431;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.980392;PAO=0;PQA=0;PQR=0;PRO=0;QA=361;QR=3972;RO=102;RPL=9;RPP=22.5536;RPPR=224.5;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=102;SRP=224.5;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:39:33,6:33:1301:6:239:-10.1423,0,-105.581 0/0:46:46,0:46:1814:0:0:0,-13.8474,-163.481 0/1:19:16,3:16:598:3:122:-5.65292,0,-48.4259 0/0:7:7,0:7:259:0:0:0,-2.10721,-23.6589 dDocent_Contig_6140 45 . T G 2635.33 . AB=0.332298;ABP=81.6689;AC=3;AF=0.375;AN=8;AO=111;CIGAR=1X;DP=377;DPB=377;DPRA=0;EPP=244.044;EPPR=571.969;GTI=0;LEN=1;MEANALT=1;MQM=59.1261;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4205;QR=10389;RO=266;RPL=0;RPP=244.044;RPPR=571.969;RPR=111;RUN=1;SAF=111;SAP=244.044;SAR=0;SRF=266;SRP=580.622;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:91:64,27:64:2523:27:1038:-66.3228,0,-199.828 0/1:131:79,52:79:3048:52:1933:-134.628,0,-234.998 0/1:100:72,28:72:2830:28:1087:-67.9797,0,-224.732 0/0:55:51,4:51:1988:4:147:0,-2.99941,-165.56 dDocent_Contig_6141 13 . G A 3084.47 . AB=0.228856;ABP=388.074;AC=4;AF=0.5;AN=8;AO=138;CIGAR=1X;DP=603;DPB=603;DPRA=0;EPP=302.673;EPPR=1012.74;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=2.77556e-17;PAIRED=1;PAIREDR=0.997849;PAO=0;PQA=0;PQR=0;PRO=0;QA=5515;QR=18609;RO=465;RPL=0;RPP=302.673;RPPR=1012.74;RPR=138;RUN=1;SAF=138;SAP=302.673;SAR=0;SRF=465;SRP=1012.74;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:174:142,32:142:5672:32:1283:-63.3503,0,-457.919 0/1:204:157,47:157:6279:47:1865:-106.646,0,-503.439 0/1:141:103,38:103:4153:38:1514:-94.0543,0,-331.279 0/1:84:63,21:63:2505:21:853:-51.7937,0,-200.3 dDocent_Contig_6142 19 . T C 1011.86 . AB=0.444444;ABP=5.18177;AC=1;AF=0.125;AN=8;AO=39;CIGAR=1X;DP=199;DPB=199;DPRA=2.75472;EPP=87.6977;EPPR=350.446;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1530;QR=6249;RO=160;RPL=0;RPP=87.6977;RPPR=350.446;RPR=39;RUN=1;SAF=39;SAP=87.6977;SAR=0;SRF=160;SRP=350.446;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:81:45,36:45:1759:36:1408:-102.584,0,-134.16 0/0:65:62,3:62:2425:3:122:0,-8.19446,-207.051 0/0:32:32,0:32:1256:0:0:0,-9.63296,-113.314 0/0:21:21,0:21:809:0:0:0,-6.32163,-73.1274 dDocent_Contig_6143 1 . N G 151.026 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=156;QR=0;RO=0;RPL=0;RPP=11.6962;RPPR=0;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1:0,1:0:0:1:38:-3.79727,-0.30103,0 1/1:3:0,3:0:0:3:118:-11.0029,-0.90309,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_6144 28 . T A 1316.62 . AB=0.221831;ABP=193.886;AC=4;AF=0.5;AN=8;AO=63;CIGAR=1X;DP=284;DPB=284;DPRA=0;EPP=139.813;EPPR=480.734;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2479;QR=8780;RO=220;RPL=0;RPP=139.813;RPPR=480.734;RPR=63;RUN=1;SAF=63;SAP=139.813;SAR=0;SRF=220;SRP=480.734;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:83:72,11:72:2878:11:423:-13.4245,0,-234.139 0/1:96:72,24:72:2868:24:937:-55.7273,0,-229.324 0/1:67:50,16:50:2007:16:649:-38.7015,0,-160.791 0/1:38:26,12:26:1027:12:470:-31.2067,0,-81.2862 dDocent_Contig_6145 75 . C G 101.506 . AB=0.114754;ABP=160.282;AC=1;AF=0.125;AN=8;AO=14;CIGAR=1X;DP=389;DPB=389;DPRA=1.37079;EPP=33.4109;EPPR=817.312;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=536;QR=14816;RO=375;RPL=14;RPP=33.4109;RPPR=817.312;RPR=0;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=375;SRP=817.312;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:105:105,0:105:4139:0:0:0,-31.6081,-372.48 0/1:122:108,14:108:4296:14:536:-11.8495,0,-349.861 0/0:114:114,0:114:4494:0:0:0,-34.3174,-404.396 0/0:48:48,0:48:1887:0:0:0,-14.4494,-170.025 dDocent_Contig_6146 181 . A G 165.274 . AB=0.269231;ABP=15.0369;AC=1;AF=0.125;AN=8;AO=10;CIGAR=1X;DP=123;DPB=123;DPRA=3.08333;EPP=24.725;EPPR=248.387;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=401;QR=4344;RO=113;RPL=10;RPP=24.725;RPPR=248.387;RPR=0;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=248.387;SRR=113;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:19,7:19:730:7:282:-17.9253,0,-58.2007 0/0:42:41,1:41:1573:1:41:0,-8.54869,-137.722 0/0:43:41,2:41:1573:2:78:0,-5.54099,-134.424 0/0:12:12,0:12:468:0:0:0,-3.61236,-42.4692 dDocent_Contig_6147 107 . N G 313.785 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=11;CIGAR=1X;DP=11;DPB=11;DPRA=0;EPP=26.8965;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=333;QR=0;RO=0;RPL=0;RPP=26.8965;RPPR=0;RPR=11;RUN=1;SAF=0;SAP=26.8965;SAR=11;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:5:0,5:0:0:5:136:-12.5097,-1.50515,0 ./.:.:.:.:.:.:.:. 1/1:1:0,1:0:0:1:34:-3.39891,-0.30103,0 1/1:5:0,5:0:0:5:163:-14.9919,-1.50515,0 dDocent_Contig_6148 8 . A G 249.174 . AB=0.0967337;ABP=1127.39;AC=1;AF=0.125;AN=8;AO=169;CIGAR=1X;DP=2128;DPB=2128;DPRA=0;EPP=369.989;EPPR=4248.24;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=58.6726;NS=4;NUMALT=1;ODDS=0;PAIRED=0.976331;PAIREDR=0.985678;PAO=0;PQA=0;PQR=0;PRO=0;QA=6450;QR=74265;RO=1955;RPL=0;RPP=369.989;RPPR=4248.24;RPR=169;RUN=1;SAF=169;SAP=369.989;SAR=0;SRF=1955;SRP=4248.24;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:796:719,77:719:27250:77:2953:-26.3154,0,-2200.72 0/0:773:704,66:704:26839:66:2510:0,-6.07278,-2178.45 0/0:326:309,16:309:11736:16:613:0,-42.4417,-997.733 0/0:233:223,10:223:8440:10:374:0,-36.1324,-710.735 dDocent_Contig_6149 98 . N C 49.3977 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=52;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:52:-4.93868,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_6150 51 . T C 71.4939 . AB=0.114286;ABP=93.4676;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=194;DPB=194;DPRA=1.69355;EPP=20.3821;EPPR=406.904;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=325;QR=7453;RO=186;RPL=8;RPP=20.3821;RPPR=406.904;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=186;SRP=406.904;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:70:62,8:62:2493:8:325:-8.54733,0,-203.429 0/0:45:45,0:45:1800:0:0:0,-13.5463,-162.209 0/0:48:48,0:48:1909:0:0:0,-14.4494,-172.011 0/0:31:31,0:31:1251:0:0:0,-9.33193,-112.857 dDocent_Contig_6151 1 . N G 188.945 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=5;CIGAR=1X;DP=5;DPB=5;DPRA=0;EPP=13.8677;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=198;QR=0;RO=0;RPL=0;RPP=13.8677;RPPR=0;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:79:-7.49763,-0.60206,0 ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:119:-11.095,-0.90309,0 ./.:.:.:.:.:.:.:. dDocent_Contig_6152 13 . C G 262.416 . AB=0.220339;ABP=43.0905;AC=1;AF=0.125;AN=8;AO=38;CIGAR=1X;DP=560;DPB=560;DPRA=0;EPP=85.5263;EPPR=1136.52;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1496;QR=20674;RO=522;RPL=0;RPP=85.5263;RPPR=1136.52;RPR=38;RUN=1;SAF=38;SAP=85.5263;SAR=0;SRF=522;SRP=1136.52;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:186:177,9:177:6995:9:362:0,-23.0468,-596.335 0/0:181:172,9:172:6810:9:351:0,-22.5361,-580.695 0/0:134:127,7:127:5052:7:279:0,-14.8569,-429.1 0/1:59:46,13:46:1817:13:504:-27.9405,0,-145.994 dDocent_Contig_6153 10 . G C 215.808 . AB=0.125683;ABP=225.723;AC=2;AF=0.25;AN=8;AO=23;CIGAR=1X;DP=294;DPB=294;DPRA=1.64865;EPP=37.093;EPPR=591.479;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.0434783;PAIREDR=0.99262;PAO=0;PQA=0;PQR=0;PRO=0;QA=882;QR=10648;RO=271;RPL=0;RPP=52.9542;RPPR=591.479;RPR=23;RUN=1;SAF=21;SAP=37.093;SAR=2;SRF=271;SRP=591.479;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:54:48,6:48:1912:6:228:-4.62789,0,-156.028 0/1:129:112,17:112:4371:17:654:-20.3506,0,-354.512 0/0:61:61,0:61:2382:0:0:0,-18.3628,-214.543 0/0:50:50,0:50:1983:0:0:0,-15.0515,-178.663 dDocent_Contig_6154 9 . G T 330.126 . AB=0.152866;ABP=167.337;AC=3;AF=0.375;AN=8;AO=24;CIGAR=1X;DP=176;DPB=176;DPRA=2.75439;EPP=55.1256;EPPR=333.074;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=924;QR=5773;RO=152;RPL=0;RPP=55.1256;RPPR=333.074;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=152;SRP=333.074;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:86:70,16:70:2649:16:612:-29.5301,0,-212.708 0/1:60:53,7:53:2019:7:273:-6.87621,0,-163.885 0/0:19:19,0:19:718:0:0:0,-5.71957,-64.9497 0/1:11:10,1:10:387:1:39:-0.585235,0,-31.8762 dDocent_Contig_6155 39 . C T 77.9368 . AB=0.178571;ABP=28.1373;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=213;DPB=213;DPRA=0.454054;EPP=13.8677;EPPR=454.677;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=195;QR=8246;RO=208;RPL=0;RPP=13.8677;RPPR=454.677;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=208;SRP=454.677;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:55:55,0:55:2184:0:0:0,-16.5566,-196.734 0/0:85:85,0:85:3341:0:0:0,-25.5875,-300.749 0/0:45:45,0:45:1802:0:0:0,-13.5463,-162.391 0/1:28:23,5:23:919:5:195:-9.49265,0,-74.5841 dDocent_Contig_6156 9 . G A 4652.2 . AB=0.192793;ABP=912.924;AC=4;AF=0.5;AN=8;AO=214;CIGAR=1X1M;DP=1110;DPB=1110;DPRA=0;EPP=450.496;EPPR=1451.4;GTI=0;LEN=1;MEANALT=3;MQM=59.4393;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=0.929907;PAIREDR=0.837556;PAO=0;PQA=0;PQR=0;PRO=0;QA=8158;QR=26084;RO=671;RPL=0;RPP=467.705;RPPR=1460.07;RPR=214;RUN=1;SAF=212;SAP=450.496;SAR=2;SRF=670;SRP=1451.4;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:255:151,5,52,47:151:5923:5,52,47:191,2031,1801:-108.691,-138.475,-624.089,0,-471.443,-471.46,-6.32737,-477.784,-339.306,-479.306 0|1:313:172,21,52,68:172:6663:21,52,68:818,2027,2576:-159.419,-143.964,-684.991,-56.8892,-537.003,-588.58,0,-480.121,-393.043,-526.882 0|1:345:214,14,49,68:214:8304:14,49,68:546,1919,2605:-148.422,-167.96,-846.005,-69.6988,-707.071,-737.201,0,-637.386,-539.119,-661.796 0|1:197:134,10,22,31:134:5194:10,22,31:395,854,1176:-56.0868,-63.9178,-487.61,-27.4053,-421.601,-447.483,0,-394.193,-357.679,-417.366 dDocent_Contig_6157 37 . A G 169.933 . AB=0.25;ABP=20.3821;AC=2;AF=0.25;AN=8;AO=8;CIGAR=1X;DP=97;DPB=97;DPRA=0.492308;EPP=20.3821;EPPR=196.271;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=325;QR=3516;RO=89;RPL=0;RPP=20.3821;RPPR=196.271;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=89;SRP=196.271;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:31:31,0:31:1230:0:0:0,-9.33193,-110.967 0/1:17:12,5:12:478:5:204:-13.6265,0,-38.2501 0/0:34:34,0:34:1336:0:0:0,-10.235,-120.5 0/1:15:12,3:12:472:3:121:-6.76475,0,-38.3084 dDocent_Contig_6158 79 . G A 104.197 . AB=0.177778;ABP=43.5927;AC=2;AF=0.25;AN=8;AO=8;CIGAR=1X;DP=116;DPB=116;DPRA=0.633803;EPP=20.3821;EPPR=237.529;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=296;QR=3928;RO=108;RPL=8;RPP=20.3821;RPPR=237.529;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=108;SRP=237.529;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:31:31,0:31:1111:0:0:0,-9.33193,-100.296 0/0:40:40,0:40:1467:0:0:0,-12.0412,-132.323 0/1:27:23,4:23:838:4:148:-5.55416,0,-67.615 0/1:18:14,4:14:512:4:148:-8.26343,0,-41.0019 dDocent_Contig_6159 53 . C T 645.571 . AB=0.313253;ABP=28.1523;AC=2;AF=0.25;AN=8;AO=26;CIGAR=2X;DP=163;DPB=163;DPRA=1.0375;EPP=59.4686;EPPR=300.502;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1025;QR=5385;RO=137;RPL=26;RPP=59.4686;RPPR=300.502;RPR=0;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=137;SRP=300.502;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:50:50,0:50:1993:0:0:0,-15.0515,-179.564 0|1:50:30,20:30:1166:20:784:-55.8232,0,-90.164 0|1:33:27,6:27:1048:6:241:-12.1318,0,-84.6769 0|0:30:30,0:30:1178:0:0:0,-9.0309,-106.297 dDocent_Contig_6160 48 . C T 1003.98 . AB=0.172897;ABP=201.893;AC=2;AF=0.25;AN=8;AO=37;CIGAR=15M1X1M1X;DP=214;DPB=186.667;DPRA=0;EPP=83.3548;EPPR=287.473;GTI=0;LEN=1;MEANALT=3.25;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1409;QR=5049;RO=131;RPL=0;RPP=83.3548;RPPR=287.473;RPR=37;RUN=1;SAF=37;SAP=83.3548;SAR=0;SRF=131;SRP=287.473;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:91:66,7,16:66:2526:7,16:277,627:-31.6896,-28.7591,-233.913,0,-184.458,-202.44 0|1:68:33,18,14:33:1289:18,14:698,519:-47.4257,0,-100.57,-14.9046,-63.5353,-116.667 0|1:39:26,7,6:26:994:7,6:266,235:-13.9795,0,-79.4386,-2.47763,-62.2208,-82.2267 0|0:16:6,5,5:6:240:5,5:168,200:-14.7009,-2.93423,-21.1996,0,-6.22952,-18.3001 dDocent_Contig_6161 52 . T C 185.277 . AB=0.363636;ABP=6.56362;AC=2;AF=0.25;AN=8;AO=8;CIGAR=1X;DP=59;DPB=59;DPRA=0.594595;EPP=20.3821;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=309;QR=2043;RO=51;RPL=8;RPP=20.3821;RPPR=113.755;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:27:27,0:27:1072:0:0:0,-8.12781,-96.7668 0/1:11:7,4:7:283:4:146:-10.1785,0,-22.532 0/0:10:10,0:10:405:0:0:0,-3.0103,-36.8104 0/1:11:7,4:7:283:4:163:-11.7471,0,-22.532 dDocent_Contig_6162 45 . G A 4410.91 . AB=0.511706;ABP=3.36616;AC=4;AF=0.5;AN=8;AO=153;CIGAR=1X;DP=299;DPB=299;DPRA=0;EPP=326.616;EPPR=320.045;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=0.993464;PAIREDR=0.993151;PAO=0;PQA=0;PQR=0;PRO=0;QA=5972;QR=5765;RO=146;RPL=1;RPP=326.616;RPPR=320.045;RPR=152;RUN=1;SAF=153;SAP=335.246;SAR=0;SRF=146;SRP=320.045;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:78:48,30:48:1916:30:1179:-82.9133,0,-149.159 0/1:104:42,62:42:1627:62:2409:-185.686,0,-115.353 0/1:58:31,27:31:1254:27:1064:-78.5903,0,-95.6673 0/1:59:25,34:25:968:34:1320:-101.3,0,-69.6481 dDocent_Contig_6164 1 . N G 127.709 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=5;CIGAR=1X;DP=5;DPB=5;DPRA=0;EPP=13.8677;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=34.8;MQMR=0;NS=1;NUMALT=1;ODDS=8.07091;PAIRED=0.6;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=191;QR=0;RO=0;RPL=0;RPP=13.8677;RPPR=0;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:5:0,5:0:0:5:191:-12.7708,-1.50515,0 ./.:.:.:.:.:.:.:. dDocent_Contig_6165 26 . C T 2640.17 . AB=0.0632603;ABP=683.939;AC=0;AF=0;AN=8;AO=26;CIGAR=2X3M2X1M1X2M1X2M1X;DP=411;DPB=411;DPRA=0;EPP=59.4686;EPPR=111.584;GTI=0;LEN=1;MEANALT=10;MQM=44.8462;MQMR=60;NS=4;NUMALT=5;ODDS=5.55112e-17;PAIRED=0.5;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1012;QR=1931;RO=50;RPL=0;RPP=59.4686;RPPR=111.584;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:137:17,5,8,12,1,79:17:652:5,8,12,1,79:45,111,465,35,3096:-99.9112,-103.718,-155.747,-99.5469,-151.771,-150.673,-70.3107,-122.538,-118.367,-120.236,-102.18,-154.403,-150.233,-121,-155.413,0,-52.2519,-48.0883,-18.8306,-50.6982,-29.7654 0|0:102:10,5,0,4,11,64:10:385:5,0,4,11,64:45,0,157,421,2511:-51.9209,-53.6205,-83.7442,-54.9312,-85.2493,-86.5597,-43.8046,-74.1243,-75.4347,-74.2306,-20.355,-50.6782,-51.989,-40.8622,-48.6777,-2.94267,-33.2958,-34.5744,-23.4525,0,-15.3085 0|0:101:11,2,1,3,7,65:11:426:2,1,3,7,65:18,16,114,251,2542:-80.7408,-83.5285,-117.941,-83.1801,-117.671,-117.894,-74.9258,-109.418,-109.07,-109.039,-63.571,-98.0652,-97.7167,-89.463,-96.4815,0,-34.5149,-34.1592,-25.9011,-14.548,-15.46 0|0:71:12,4,0,7,2,38:12:468:4,0,7,2,38:36,0,276,75,1498:-38.8415,-41.4107,-78.7038,-42.4538,-79.9079,-80.9511,-21.8075,-59.269,-60.3119,-58.2047,-36.3048,-73.7608,-74.8039,-54.1638,-74.2018,0,-37.4815,-38.4976,-17.8648,-32.3518,-27.0585 dDocent_Contig_6166 106 . N A 329.805 . AB=0.2;ABP=10.8276;AC=4;AF=1;AN=4;AO=2;CIGAR=2X4M;DP=15;DPB=15;DPRA=2;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=0;NS=2;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=67;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:5:0,5,0:0:0:5,0:171,0:-8.68107,-1.50515,0,-8.68107,-1.50515,-8.68107 .:.:.:.:.:.:.:. 1|1:10:0,8,2:0:0:8,2:252,67:-25.9794,-5.76108,-3.35284,-20.5491,0,-19.9471 .:.:.:.:.:.:.:. dDocent_Contig_6167 141 . A T 436.147 . AB=0.444444;ABP=3.9754;AC=2;AF=0.25;AN=8;AO=20;CIGAR=1X;DP=102;DPB=102;DPRA=0;EPP=46.4397;EPPR=181.071;GTI=0;LEN=1;MEANALT=1;MQM=59.85;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.95;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=774;QR=3195;RO=82;RPL=0;RPP=46.4397;RPPR=181.071;RPR=20;RUN=1;SAF=0;SAP=46.4397;SAR=20;SRF=0;SRP=181.071;SRR=82;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:10,15:10:385:15:580:-45.0098,0,-27.4744 0/0:39:36,3:36:1425:3:119:0,-0.645155,-117.416 0/0:27:26,1:26:991:1:38:0,-4.33054,-85.6907 0/1:11:10,1:10:394:1:37:-0.386499,0,-32.5049 dDocent_Contig_6168 32 . C T 703.949 . AB=0.202186;ABP=143.99;AC=3;AF=0.375;AN=8;AO=38;CIGAR=1X;DP=205;DPB=205;DPRA=0;EPP=85.5263;EPPR=365.646;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1484;QR=6664;RO=167;RPL=0;RPP=85.5263;RPPR=365.646;RPR=38;RUN=1;SAF=38;SAP=85.5263;SAR=0;SRF=167;SRP=365.646;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:78:65,13:65:2606:13:523:-23.9332,0,-211.186 0/1:59:49,10:49:1947:10:361:-15.0556,0,-157.654 0/1:46:32,14:32:1260:14:559:-36.804,0,-99.8145 0/0:22:21,1:21:851:1:41:0,-2.52809,-72.8073 dDocent_Contig_6169 10 . G T 141.612 . AB=0.149254;ABP=74.6041;AC=1;AF=0.125;AN=8;AO=10;CIGAR=1X;DP=207;DPB=207;DPRA=1.43571;EPP=24.725;EPPR=430.79;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=393;QR=7714;RO=197;RPL=0;RPP=24.725;RPPR=430.79;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=197;SRP=430.79;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:67:57,10:57:2226:10:393:-15.5592,0,-180.355 0/0:44:44,0:44:1736:0:0:0,-13.2453,-156.468 0/0:72:72,0:72:2842:0:0:0,-21.6742,-255.904 0/0:24:24,0:24:910:0:0:0,-7.22472,-82.1946 dDocent_Contig_6170 16 . C G 159.831 . AB=0.269231;ABP=15.0369;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X;DP=77;DPB=77;DPRA=1.17647;EPP=22.5536;EPPR=150.67;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=355;QR=2736;RO=68;RPL=0;RPP=22.5536;RPPR=150.67;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=68;SRP=150.67;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:19,7:19:761:7:276:-17.3808,0,-60.9841 0/0:17:17,0:17:689:0:0:0,-5.11751,-62.3386 0/0:19:18,1:18:719:1:41:0,-1.625,-60.941 0/0:15:14,1:14:567:1:38:0,-0.718181,-47.5741 dDocent_Contig_6171 24 . C G 124.76 . AB=0.170213;ABP=47.41;AC=2;AF=0.25;AN=8;AO=9;CIGAR=1X;DP=96;DPB=96;DPRA=1.44444;EPP=22.5536;EPPR=191.928;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=366;QR=3453;RO=87;RPL=0;RPP=22.5536;RPPR=191.928;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=87;SRP=191.928;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:37:32,5:32:1260:5:205:-7.6969,0,-102.532 0/0:18:18,0:18:724:0:0:0,-5.41854,-65.4819 0/0:31:30,1:30:1190:1:41:0,-5.23736,-103.281 0/1:10:7,3:7:279:3:120:-8.17701,0,-22.4694 dDocent_Contig_6172 12 . T C 50.2209 . AB=0.137931;ABP=36.0317;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=98;DPB=98;DPRA=1.26087;EPP=11.6962;EPPR=207.129;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=0;PAIREDR=0.978723;PAO=0;PQA=0;PQR=0;PRO=0;QA=164;QR=3702;RO=94;RPL=0;RPP=11.6962;RPPR=207.129;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=94;SRP=207.129;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:25,4:25:999:4:164:-6.42003,0,-81.4768 0/0:24:24,0:24:953:0:0:0,-7.22472,-86.0716 0/0:21:21,0:21:822:0:0:0,-6.32163,-74.2908 0/0:24:24,0:24:928:0:0:0,-7.22472,-83.8186 dDocent_Contig_6173 15 . G A 697.32 . AB=0.201183;ABP=134.082;AC=1;AF=0.125;AN=8;AO=36;CIGAR=1X;DP=534;DPB=534;DPRA=1.09412;EPP=81.1833;EPPR=1084.4;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.995984;PAO=0;PQA=0;PQR=0;PRO=0;QA=1438;QR=19758;RO=498;RPL=0;RPP=81.1833;RPPR=1084.4;RPR=36;RUN=1;SAF=36;SAP=81.1833;SAR=0;SRF=498;SRP=1084.4;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:146:146,0:146:5815:0:0:0,-43.9504,-523.139 0/1:169:135,34:135:5391:34:1356:-71.431,0,-434.157 0/0:110:108,2:108:4268:2:82:0,-25.3336,-376.294 0/0:109:109,0:109:4284:0:0:0,-32.8123,-385.528 dDocent_Contig_6174 9 . G A 9091.86 . AB=0.607143;ABP=53.2644;AC=4;AF=0.5;AN=8;AO=306;CIGAR=2X;DP=504;DPB=504;DPRA=0;EPP=667.481;EPPR=426.447;GTI=0;LEN=1;MEANALT=1.25;MQM=59.9346;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.974359;PAO=0;PQA=0;PQR=0;PRO=0;QA=11858;QR=7504;RO=195;RPL=0;RPP=667.481;RPPR=426.447;RPR=306;RUN=1;SAF=306;SAP=667.481;SAR=0;SRF=195;SRP=426.447;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:169:65,104:65:2504:104:4039:-312.693,0,-174.67 0|1:142:42,97:42:1589:97:3747:-295.063,0,-101.066 0|1:121:48,73:48:1855:73:2830:-218.433,0,-130.762 0|1:72:40,32:40:1556:32:1242:-90.395,0,-118.629 dDocent_Contig_6175 28 . G C 63.9435 . AB=0.190476;ABP=20.4855;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=164;DPB=164;DPRA=0.690722;EPP=18.2106;EPPR=341.76;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=276;QR=6144;RO=156;RPL=0;RPP=18.2106;RPPR=341.76;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=156;SRP=341.76;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:60:60,0:60:2335:0:0:0,-18.0618,-210.312 0/1:21:17,4:17:676:4:156:-8.09332,0,-54.8462 0/0:46:42,3:42:1649:3:120:0,-2.71384,-137.466 0/0:37:37,0:37:1484:0:0:0,-11.1381,-133.803 dDocent_Contig_6176 15 . C T 206.993 . AB=0.22449;ABP=35.3165;AC=2;AF=0.25;AN=8;AO=11;CIGAR=1X;DP=73;DPB=73;DPRA=2.04167;EPP=26.8965;EPPR=137.642;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=423;QR=2396;RO=62;RPL=0;RPP=26.8965;RPPR=137.642;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:15:15,0:15:583:0:0:0,-4.51545,-52.8022 0/0:9:9,0:9:345:0:0:0,-2.70927,-31.4006 0/1:31:22,9:22:872:9:348:-22.3468,0,-69.4592 0/1:18:16,2:16:596:2:75:-1.7018,0,-48.5334 dDocent_Contig_6177 94 . C G 1040.45 . AB=0.193989;ABP=300.704;AC=4;AF=0.5;AN=8;AO=71;CIGAR=1X;DP=366;DPB=366;DPRA=0;EPP=157.185;EPPR=643.595;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2448;QR=9999;RO=295;RPL=71;RPP=157.185;RPPR=643.595;RPR=0;RUN=1;SAF=71;SAP=157.185;SAR=0;SRF=295;SRP=643.595;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:143:119,24:119:4000:24:835:-32.4222,0,-317.16 0/1:126:108,18:108:3672:18:619:-18.1038,0,-292.77 0/1:55:32,23:32:1093:23:786:-54.5004,0,-82.1199 0/1:42:36,6:36:1234:6:208:-6.41638,0,-98.7191 dDocent_Contig_6178 77 . G A 218.656 . AB=0.17757;ABP=99.6307;AC=3;AF=0.375;AN=8;AO=19;CIGAR=1X;DP=127;DPB=127;DPRA=1.78333;EPP=44.2683;EPPR=235.358;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=635;QR=3497;RO=107;RPL=19;RPP=44.2683;RPPR=235.358;RPR=0;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=107;SRP=235.358;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:39:35,4:35:1176:4:134:-0.651043,0,-94.4012 0/0:20:19,0:19:606:0:0:0,-5.71957,-54.4946 0/1:50:38,12:38:1245:12:413:-22.4492,0,-97.2904 0/1:18:15,3:15:470:3:88:-2.79247,0,-37.1833 dDocent_Contig_6179 119 . C T 199.472 . AB=0.190476;ABP=72.911;AC=2;AF=0.25;AN=8;AO=19;CIGAR=1X;DP=129;DPB=129;DPRA=0;EPP=44.2683;EPPR=241.872;GTI=0;LEN=1;MEANALT=1;MQM=39.1579;MQMR=59.8909;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=673;QR=3936;RO=110;RPL=0;RPP=44.2683;RPPR=241.872;RPR=19;RUN=1;SAF=0;SAP=44.2683;SAR=19;SRF=0;SRP=241.872;SRR=110;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:47:37,10:37:1344:10:355:-16.6093,0,-107.109 0/0:26:24,2:24:861:2:78:0,-0.988685,-70.9684 0/0:19:18,1:18:636:1:37:0,-2.23198,-54.0752 0/1:37:31,6:31:1095:6:203:-6.73575,0,-87.7144 dDocent_Contig_6180 157 . G A 523.763 . AB=0.181287;ABP=153.883;AC=3;AF=0.375;AN=8;AO=34;CIGAR=1X;DP=211;DPB=211;DPRA=0;EPP=76.8404;EPPR=387.361;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1295;QR=6688;RO=177;RPL=0;RPP=76.8404;RPPR=387.361;RPR=34;RUN=1;SAF=0;SAP=76.8404;SAR=34;SRF=0;SRP=387.361;SRR=177;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:79:62,17:62:2327:17:668:-36.6721,0,-185.844 0/1:67:61,6:61:2299:6:226:-0.530238,0,-186.954 0/0:40:37,3:37:1408:3:109:0,-1.87496,-116.832 0/1:25:17,8:17:654:8:292:-19.0984,0,-51.6683 dDocent_Contig_6182 9 . G A 242.649 . AB=0.24;ABP=32.3686;AC=1;AF=0.125;AN=8;AO=15;CIGAR=2X;DP=160;DPB=160;DPRA=1.85714;EPP=35.5824;EPPR=317.874;GTI=0;LEN=1;MEANALT=1;MQM=48;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=573;QR=5586;RO=145;RPL=0;RPP=35.5824;RPPR=317.874;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=145;SRP=317.874;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:43:43,0:43:1663:0:0:0,-12.9443,-149.924 0|0:54:51,3:51:1987:3:116:0,-5.56761,-168.364 0|1:50:38,12:38:1455:12:457:-25.9639,0,-116.166 0|0:13:13,0:13:481:0:0:0,-3.91339,-43.6306 dDocent_Contig_6183 50 . T A 2608 . AB=0.5;ABP=3.0103;AC=4;AF=0.5;AN=8;AO=92;CIGAR=1X;DP=184;DPB=184;DPRA=0;EPP=202.786;EPPR=202.786;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.98913;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3582;QR=3544;RO=92;RPL=92;RPP=202.786;RPPR=202.786;RPR=0;RUN=1;SAF=92;SAP=202.786;SAR=0;SRF=92;SRP=202.786;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:44:13,31:13:505:31:1226:-97.3759,0,-32.5481 0/1:83:45,38:45:1741:38:1491:-109.455,0,-131.933 0/1:36:25,11:25:940:11:431:-28.305,0,-74.0624 0/1:21:9,12:9:358:12:434:-33.0619,0,-26.2602 dDocent_Contig_6184 145 . C G 775.974 . AB=0.174545;ABP=256.014;AC=3;AF=0.375;AN=8;AO=54;CIGAR=1X;DP=375;DPB=375;DPRA=0;EPP=120.27;EPPR=700.053;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2064;QR=12292;RO=321;RPL=0;RPP=120.27;RPPR=700.053;RPR=54;RUN=1;SAF=0;SAP=120.27;SAR=54;SRF=0;SRP=700.053;SRR=321;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:100:94,6:94:3635:6:233:0,-8.76405,-305.865 0/1:94:76,18:76:2916:18:708:-35.7451,0,-234.254 0/1:135:113,22:113:4322:22:798:-31.478,0,-348.333 0/1:46:38,8:38:1419:8:325:-15.7723,0,-114.101 dDocent_Contig_6185 20 . A T 458.299 . AB=0.184615;ABP=115.326;AC=2;AF=0.25;AN=8;AO=26;CIGAR=1X;DP=294;DPB=294;DPRA=0.557576;EPP=59.4686;EPPR=584.965;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1046;QR=10706;RO=268;RPL=0;RPP=59.4686;RPPR=584.965;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=268;SRP=584.965;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:54:52,2:52:2060:2:72:0,-9.4197,-178.754 0/0:110:110,0:110:4408:0:0:0,-33.1133,-396.656 0/1:86:76,10:76:3050:10:403:-10.7413,0,-248.691 0/1:44:30,14:30:1188:14:571:-38.4866,0,-93.947 dDocent_Contig_6187 50 . T G 93.2787 . AB=0.0555556;ABP=126.543;AC=0;AF=0;AN=8;AO=4;CIGAR=1X1M1X3M2X1M1X;DP=183;DPB=184.6;DPRA=2.25;EPP=11.6962;EPPR=348.274;GTI=0;LEN=1;MEANALT=4;MQM=53.75;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.75;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=158;QR=6243;RO=159;RPL=4;RPP=11.6962;RPPR=348.274;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=159;SRP=348.274;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:41:37,0,3:37:1464:0,3:0,119:0,-11.1381,-131.675,-1.16525,-121.878,-120.975 0|0:72:60,4,6:60:2347:4,6:158,234:-1.19353,-6.73457,-198.518,0,-180.489,-191.196 0|0:47:39,0,7:39:1529:0,7:0,275:-11.0101,-22.7503,-148.502,0,-125.884,-123.777 0|0:23:23,0,0:23:903:0,0:0,0:0,-6.92369,-81.5797,-6.92369,-81.5797,-81.5797 dDocent_Contig_6188 107 . N G 161.655 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=5;CIGAR=1X;DP=5;DPB=5;DPRA=0;EPP=13.8677;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=1.69407e-21;PAIRED=0.2;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=162;QR=0;RO=0;RPL=0;RPP=13.8677;RPPR=0;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:95:-8.86421,-0.90309,0 1/1:1:0,1:0:0:1:35:-3.49863,-0.30103,0 1/1:1:0,1:0:0:1:32:-3.19931,-0.30103,0 dDocent_Contig_6189 1 . N G 1304.82 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=36;CIGAR=1X;DP=36;DPB=36;DPRA=0;EPP=81.1833;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1427;QR=0;RO=0;RPL=0;RPP=81.1833;RPPR=0;RPR=36;RUN=1;SAF=36;SAP=81.1833;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:120:-11.1879,-0.90309,0 1/1:10:0,10:0:0:10:403:-36.6302,-3.0103,0 1/1:20:0,20:0:0:20:786:-71.059,-6.0206,0 1/1:3:0,3:0:0:3:118:-11.0027,-0.90309,0 dDocent_Contig_6190 130 . A C 35.9549 . AB=0.12766;ABP=116.204;AC=2;AF=0.25;AN=8;AO=15;CIGAR=1X;DP=148;DPB=148;DPRA=2.40741;EPP=35.5824;EPPR=291.816;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=469;QR=4002;RO=133;RPL=0;RPP=35.5824;RPPR=291.816;RPR=15;RUN=1;SAF=0;SAP=35.5824;SAR=15;SRF=0;SRP=291.816;SRR=133;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:45:40,5:40:1182:5:163:-1.44477,0,-93.1058 0/1:49:42,7:42:1272:7:219:-5.26512,0,-100.005 0/0:36:33,3:33:1020:3:87:0,-2.7194,-83.9677 0/0:18:18,0:18:528:0:0:0,-5.41854,-47.8032 dDocent_Contig_6192 183 . A C 499.553 . AB=0.259259;ABP=43.7857;AC=1;AF=0.125;AN=8;AO=21;CIGAR=1X;DP=243;DPB=243;DPRA=1.5;EPP=48.6112;EPPR=485.077;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=838;QR=8759;RO=222;RPL=21;RPP=48.6112;RPPR=485.077;RPR=0;RUN=1;SAF=0;SAP=48.6112;SAR=21;SRF=0;SRP=485.077;SRR=222;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:81:60,21:60:2347:21:838:-51.3532,0,-187.009 0/0:79:79,0:79:3107:0:0:0,-23.7814,-279.71 0/0:50:50,0:50:1982:0:0:0,-15.0515,-178.582 0/0:33:33,0:33:1323:0:0:0,-9.93399,-119.333 dDocent_Contig_6193 9 . G T 375.138 . AB=0.0625;ABP=56.2114;AC=0;AF=0;AN=8;AO=2;CIGAR=1X2M1X4M;DP=161;DPB=160.875;DPRA=0.780488;EPP=7.35324;EPPR=272.273;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=79;QR=4833;RO=124;RPL=0;RPP=7.35324;RPPR=272.273;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=124;SRP=272.273;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:45:32,0,0,12:32:1241:0,0,12:0,0,473:-28.4553,-38.0883,-140.041,-38.0883,-140.041,-140.041,0,-101.935,-101.935,-98.3228 0|0:41:37,0,0,2:37:1464:0,0,2:0,0,79:0,-11.1381,-131.654,-11.1381,-131.654,-131.654,-4.65656,-125.2,-125.2,-124.598 0|0:32:21,2,2,7:21:832:2,2,7:76,79,275:-11.9613,-15.6819,-83.6025,-11.7632,-77.7025,-79.7173,0,-65.9616,-62.072,-66.4672 0|0:43:34,3,0,4:34:1296:3,0,4:117,0,156:-2.45895,-8.81243,-114.218,-12.694,-115.121,-119.054,0,-102.485,-106.417,-105.213 dDocent_Contig_6194 9 . G T 803.18 . AB=0.2375;ABP=98.7722;AC=2;AF=0.25;AN=8;AO=44;CIGAR=1X;DP=356;DPB=356;DPRA=0;EPP=98.5551;EPPR=680.51;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1681;QR=11813;RO=312;RPL=0;RPP=98.5551;RPPR=680.51;RPR=44;RUN=1;SAF=44;SAP=98.5551;SAR=0;SRF=312;SRP=680.51;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:125:93,32:93:3525:32:1229:-73.2762,0,-279.753 0/0:124:120,4:120:4543:4:147:0,-23.7402,-395.346 0/0:72:70,2:70:2638:2:76:0,-14.4595,-230.399 0/1:35:29,6:29:1107:6:229:-10.4397,0,-89.3982 dDocent_Contig_6195 10 . C G 235.393 . AB=0.151786;ABP=120.968;AC=2;AF=0.25;AN=8;AO=23;CIGAR=1X;DP=209;DPB=209;DPRA=0;EPP=52.9542;EPPR=406.904;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.2688;NS=4;NUMALT=1;ODDS=0;PAIRED=0.782609;PAIREDR=0.967742;PAO=0;PQA=0;PQR=0;PRO=0;QA=911;QR=7462;RO=186;RPL=0;RPP=52.9542;RPPR=406.904;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=186;SRP=406.904;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:66:61,5:61:2461:5:204:0,-1.12395,-202.882 0/1:90:78,12:78:3112:12:473:-15.8223,0,-252.32 0/0:31:30,1:30:1212:1:41:0,-5.23736,-104.541 0/1:22:17,5:17:677:5:193:-11.1149,0,-54.6383 dDocent_Contig_6196 20 . T G 1291.27 . AB=0.297753;ABP=66.2514;AC=4;AF=0.5;AN=8;AO=53;CIGAR=1X;DP=178;DPB=178;DPRA=0;EPP=118.098;EPPR=274.444;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2097;QR=4769;RO=125;RPL=0;RPP=118.098;RPPR=274.444;RPR=53;RUN=1;SAF=53;SAP=118.098;SAR=0;SRF=125;SRP=274.444;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:80:68,12:68:2618:12:474:-18.9285,0,-211.713 0/1:49:33,16:33:1263:16:619:-41.2905,0,-99.2051 0/1:27:14,13:14:509:13:516:-38.6575,0,-38.0144 0/1:22:10,12:10:379:12:488:-37.6488,0,-27.836 dDocent_Contig_6197 130 . A G 35.3904 . AB=0.190476;ABP=20.4855;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=126;DPB=126;DPRA=2.23077;EPP=13.8677;EPPR=265.758;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=0.991736;PAO=0;PQA=0;PQR=0;PRO=0;QA=160;QR=4078;RO=121;RPL=0;RPP=13.8677;RPPR=265.758;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=265.758;SRR=121;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:66:65,1:65:2184:1:35:0,-16.3693,-193.333 0/0:32:32,0:32:1067:0:0:0,-9.63296,-96.3317 0/1:21:17,4:17:586:4:125:-5.23788,0,-46.744 0/0:7:7,0:7:241:0:0:0,-2.10721,-22.0264 dDocent_Contig_6198 56 . T A 1807.72 . AB=0.218362;ABP=280.662;AC=4;AF=0.5;AN=8;AO=88;CIGAR=1X;DP=403;DPB=403;DPRA=0;EPP=194.1;EPPR=687.024;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3425;QR=12390;RO=315;RPL=88;RPP=194.1;RPPR=687.024;RPR=0;RUN=1;SAF=88;SAP=194.1;SAR=0;SRF=315;SRP=687.024;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:119:105,14:105:4096:14:547:-13.7486,0,-332.805 0/1:103:71,32:71:2828:32:1246:-81.4037,0,-223.622 0/1:116:96,20:96:3795:20:776:-35.2329,0,-306.649 0/1:65:43,22:43:1671:22:856:-57.7848,0,-131.053 dDocent_Contig_6199 107 . N T 646.803 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=28;CIGAR=1X;DP=28;DPB=28;DPRA=0;EPP=63.8115;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=701;QR=0;RO=0;RPL=0;RPP=63.8115;RPPR=0;RPR=28;RUN=1;SAF=0;SAP=63.8115;SAR=28;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:8:0,8:0:0:8:183:-16.6944,-2.40824,0 1/1:8:0,8:0:0:8:224:-20.4351,-2.40824,0 1/1:5:0,5:0:0:5:131:-12.0494,-1.50515,0 1/1:7:0,7:0:0:7:163:-14.8994,-2.10721,0 dDocent_Contig_6200 136 . G T 135.077 . AB=0.225;ABP=29.2851;AC=2;AF=0.25;AN=8;AO=9;CIGAR=1X;DP=62;DPB=62;DPRA=1.81818;EPP=22.5536;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=314;QR=1842;RO=53;RPL=0;RPP=22.5536;RPPR=118.098;RPR=9;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=118.098;SRR=53;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:25,5:25:873:5:174:-6.97105,0,-69.8578 0/1:10:6,4:6:208:4:140:-9.93463,0,-16.0493 0/0:9:9,0:9:313:0:0:0,-2.70927,-28.5071 0/0:13:13,0:13:448:0:0:0,-3.91339,-40.6498 dDocent_Contig_6201 11 . C A 14324.4 . AB=0.243981;ABP=1421.77;AC=4;AF=0.5;AN=8;AO=608;CIGAR=1X;DP=2492;DPB=2492;DPRA=0;EPP=1323.27;EPPR=4094.06;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=24344;QR=74809;RO=1884;RPL=0;RPP=1323.27;RPPR=4094.06;RPR=608;RUN=1;SAF=608;SAP=1323.27;SAR=0;SRF=1884;SRP=4094.06;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:882:590,292:590:23476:292:11667:-783.714,0,-1845.32 0/1:668:497,171:497:19734:171:6837:-413.922,0,-1573.32 0/1:496:408,88:408:16212:88:3561:-171.191,0,-1308.5 0/1:446:389,57:389:15387:57:2279:-71.0139,0,-1249.4 dDocent_Contig_6202 39 . A G 623.802 . AB=0.234375;ABP=81.4547;AC=4;AF=0.5;AN=8;AO=30;CIGAR=1X2M1X;DP=128;DPB=128;DPRA=0;EPP=59.7581;EPPR=213.643;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=0.0333333;PAIREDR=0.948454;PAO=0;PQA=0;PQR=0;PRO=0;QA=1186;QR=3756;RO=97;RPL=0;RPP=68.1545;RPPR=213.643;RPR=30;RUN=1;SAF=29;SAP=59.7581;SAR=1;SRF=97;SRP=213.643;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:50:32,18:32:1210:18:711:-49.2675,0,-94.1319 0|1:39:33,6:33:1312:6:237:-9.96313,0,-106.613 0|1:19:17,2:17:660:2:80:-1.87222,0,-54.0146 0|1:20:15,4:15:574:4:158:-8.47331,0,-45.8671 dDocent_Contig_6203 18 . G T 52.058 . AB=0.102273;ABP=123.922;AC=1;AF=0.125;AN=8;AO=12;CIGAR=1X;DP=332;DPB=332;DPRA=0.627451;EPP=29.068;EPPR=695.71;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.99373;PAO=0;PQA=0;PQR=0;PRO=0;QA=487;QR=12689;RO=319;RPL=0;RPP=29.068;RPPR=695.71;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=319;SRP=695.71;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:98:97,0:97:3868:0:0:0,-29.1999,-347.819 0/0:106:106,0:106:4213:0:0:0,-31.9092,-379.125 0/1:88:79,9:79:3133:9:367:-6.90462,0,-255.554 0/0:40:37,3:37:1475:3:120:0,-0.85389,-121.81 dDocent_Contig_6211 35 . C T 64.5896 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=2X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=68;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:2:0,2:0:0:2:68:-6.45788,-0.60206,0 .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. dDocent_Contig_6231 108 . C T 31.6517 . AB=0.135135;ABP=45.7942;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=126;DPB=126;DPRA=1.24719;EPP=13.8677;EPPR=265.758;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=174;QR=3999;RO=121;RPL=0;RPP=13.8677;RPPR=265.758;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=265.758;SRR=121;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:33:33,0:33:1117:0:0:0,-9.93399,-100.834 0/1:37:32,5:32:1045:5:174:-4.86384,0,-83.2084 0/0:27:27,0:27:910:0:0:0,-8.12781,-82.2099 0/0:29:29,0:29:927:0:0:0,-8.72987,-83.724 dDocent_Contig_6232 177 . G T 109.484 . AB=0.155172;ABP=62.913;AC=2;AF=0.25;AN=8;AO=10;CIGAR=1X;DP=127;DPB=127;DPRA=1.43056;EPP=24.725;EPPR=257.073;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=371;QR=4682;RO=117;RPL=10;RPP=24.725;RPPR=257.073;RPR=0;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=257.073;SRR=117;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:45:44,1:44:1755:1:30:0,-10.5468,-155.161 0/1:33:30,3:30:1202:3:121:-1.34621,0,-98.5206 0/1:25:19,6:19:762:6:220:-12.6239,0,-61.3745 0/0:24:24,0:24:963:0:0:0,-7.22472,-86.9636 dDocent_Contig_6233 209 . N G 44.6403 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=47;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:47:-4.46293,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_6234 10 . C G 77.5868 . AB=0.09375;ABP=94.755;AC=1;AF=0.125;AN=8;AO=7;CIGAR=2M9I3M1X2M1X2M1D2M1X;DP=157;DPB=151.267;DPRA=1.57377;EPP=18.2106;EPPR=222.329;GTI=0;LEN=1;MEANALT=4.5;MQM=57.4286;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.714286;PAIREDR=1;PAO=1;PQA=0;PQR=0;PRO=0;QA=275;QR=3898;RO=101;RPL=0;RPP=18.2106;RPPR=222.329;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=101;SRP=222.329;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:39:20,0:20:775:0:0:0,-6.0206,-69.6901 0|1:64:33,6:33:1266:6:236:-9.45765,0,-102.111 0|0:22:19,0:19:738:0:0:0,-5.71957,-66.3564 0|0:32:29,1:29:1119:1:39:0,-5.54731,-97.1322 dDocent_Contig_6235 9 . G C 62.1389 . AB=0.119403;ABP=87.3088;AC=1;AF=0.125;AN=8;AO=26;CIGAR=1X;DP=593;DPB=593;DPRA=0;EPP=59.4686;EPPR=1234.24;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=0.994709;PAO=0;PQA=0;PQR=0;PRO=0;QA=993;QR=21611;RO=567;RPL=0;RPP=59.4686;RPPR=1234.24;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=567;SRP=1234.24;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:225:223,2:223:8446:2:78:0,-60.3283,-752.519 0/0:184:178,6:178:6825:6:233:0,-34.0494,-592.796 0/0:117:107,10:107:4088:10:374:0,-1.21254,-334 0/1:67:59,8:59:2252:8:308:-7.91279,0,-182.734 dDocent_Contig_6236 141 . C T 5070.85 . AB=0.346667;ABP=125.539;AC=4;AF=0.5;AN=8;AO=208;CIGAR=1X;DP=600;DPB=600;DPRA=0;EPP=454.677;EPPR=854.227;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7712;QR=14886;RO=392;RPL=0;RPP=454.677;RPPR=854.227;RPR=208;RUN=1;SAF=0;SAP=454.677;SAR=208;SRF=0;SRP=854.227;SRR=392;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:222:146,76:146:5567:76:2823:-187.444,0,-434.176 0/1:166:103,63:103:3867:63:2313:-158.435,0,-298.162 0/1:141:93,48:93:3525:48:1805:-120.264,0,-274.928 0/1:71:50,21:50:1927:21:771:-48.3408,0,-152.298 dDocent_Contig_6237 9 . G A 1262.9 . AB=0.170022;ABP=425.767;AC=4;AF=0.5;AN=8;AO=76;CIGAR=1X1M1X;DP=447;DPB=447;DPRA=0;EPP=168.042;EPPR=808.627;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2966;QR=14287;RO=371;RPL=0;RPP=168.042;RPPR=808.627;RPR=76;RUN=1;SAF=76;SAP=168.042;SAR=0;SRF=371;SRP=808.627;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:152:130,22:130:5033:22:865:-32.4101,0,-407.196 0|1:114:100,14:100:3865:14:549:-15.4375,0,-313.617 0|1:134:102,32:102:3888:32:1234:-71.0009,0,-309.663 0|1:47:39,8:39:1501:8:318:-14.8392,0,-121.209 dDocent_Contig_6238 14 . C A 9125.23 . AB=0.556169;ABP=17.8907;AC=4;AF=0.5;AN=8;AO=302;CIGAR=1X;DP=543;DPB=543;DPRA=0;EPP=658.795;EPPR=524.164;GTI=0;LEN=1;MEANALT=1.25;MQM=59.6821;MQMR=59.9667;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.991667;PAO=0;PQA=0;PQR=0;PRO=0;QA=12093;QR=9474;RO=240;RPL=0;RPP=658.795;RPPR=524.164;RPR=302;RUN=1;SAF=302;SAP=658.795;SAR=0;SRF=240;SRP=524.164;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:176:81,95:81:3234:95:3816:-290.455,0,-238.109 0/1:195:92,103:92:3618:103:4130:-312.971,0,-266.925 0/1:125:40,84:40:1571:84:3354:-258.962,0,-103.896 0/1:47:27,20:27:1051:20:793:-57.5334,0,-80.7275 dDocent_Contig_6240 24 . T C 12525.2 . AB=0.538983;ABP=10.7982;AC=8;AF=1;AN=8;AO=318;CIGAR=1X4M;DP=590;DPB=590;DPRA=0;EPP=693.539;EPPR=215.815;GTI=0;LEN=1;MEANALT=2;MQM=59.7233;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.987421;PAIREDR=0.928571;PAO=0;PQA=0;PQR=0;PRO=0;QA=12620;QR=3854;RO=98;RPL=0;RPP=693.539;RPPR=215.815;RPR=318;RUN=1;SAF=318;SAP=693.539;SAR=0;SRF=98;SRP=215.815;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:122:6,35,81:6:239:35,81:1402,3222:-358.839,-245.141,-254.286,-95.8239,0,-91.1211 1|1:170:25,46,99:25:987:46,99:1848,3989:-392.328,-247.571,-314.937,-71.0749,0,-122.485 1|1:161:34,43,84:34:1341:43,84:1658,3249:-281.566,-156.185,-253.573,-25.2765,0,-110.324 1|1:137:33,50,54:33:1287:50,54:2003,2160:-227.189,-72.1074,-162.835,-59.2422,0,-148.765 dDocent_Contig_6242 30 . C T 3686.84 . AB=0.280289;ABP=234.879;AC=4;AF=0.5;AN=8;AO=155;CIGAR=1X2M1X2M2X;DP=553;DPB=553;DPRA=0;EPP=339.589;EPPR=865.085;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=5.55112e-17;PAIRED=0.96129;PAIREDR=0.97733;PAO=0;PQA=0;PQR=0;PRO=0;QA=6018;QR=15572;RO=397;RPL=0;RPP=339.589;RPPR=865.085;RPR=155;RUN=1;SAF=155;SAP=339.589;SAR=0;SRF=397;SRP=865.085;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:149:100,49:100:3952:49:1858:-122.595,0,-310.856 0|1:176:123,52:123:4847:52:2036:-130.364,0,-383.094 0|1:141:106,35:106:4118:35:1365:-80.6764,0,-328.208 0|1:87:68,19:68:2655:19:759:-42.4459,0,-212.906 dDocent_Contig_6243 20 . C A 73.1503 . AB=0.127273;ABP=69.3784;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=201;DPB=201;DPRA=1.13014;EPP=18.2106;EPPR=424.276;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.958763;PAO=0;PQA=0;PQR=0;PRO=0;QA=280;QR=7800;RO=194;RPL=0;RPP=18.2106;RPPR=424.276;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=194;SRP=424.276;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:59:59,0:59:2388:0:0:0,-17.7608,-215.063 0/1:55:48,7:48:1913:7:280:-9.014,0,-155.808 0/0:51:51,0:51:2049:0:0:0,-15.3525,-184.595 0/0:36:36,0:36:1450:0:0:0,-10.8371,-130.746 dDocent_Contig_6244 41 . G T 136.182 . AB=0.130435;ABP=139.435;AC=2;AF=0.25;AN=8;AO=19;CIGAR=1X;DP=213;DPB=213;DPRA=1.58559;EPP=44.2683;EPPR=424.276;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=718;QR=7653;RO=194;RPL=0;RPP=44.2683;RPPR=424.276;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=194;SRP=424.276;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:71:61,10:61:2445:10:389:-13.9847,0,-198.821 0/0:61:57,4:57:2264:4:152:0,-4.31569,-189.877 0/1:44:39,5:39:1462:5:177:-3.02116,0,-118.561 0/0:37:37,0:37:1482:0:0:0,-11.1381,-133.626 dDocent_Contig_6245 86 . C T 66.9425 . AB=0.238095;ABP=15.5221;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=235;DPB=235;DPRA=1.29861;EPP=18.2106;EPPR=498.106;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=231;QR=7791;RO=228;RPL=7;RPP=18.2106;RPPR=498.106;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=228;SRP=498.106;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:121:120,1:120:4126:1:36:0,-32.8264,-367.949 0/0:48:48,0:48:1629:0:0:0,-14.4494,-146.896 0/0:45:44,1:44:1498:1:35:0,-10.0477,-131.614 0/1:21:16,5:16:538:5:160:-8.39322,0,-42.4183 dDocent_Contig_6246 9 . G A 620.999 . AB=0.25;ABP=70.3259;AC=2;AF=0.25;AN=8;AO=31;CIGAR=1X;DP=205;DPB=205;DPRA=1.53086;EPP=70.3259;EPPR=380.846;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1135;QR=6650;RO=174;RPL=0;RPP=70.3259;RPPR=380.846;RPR=31;RUN=1;SAF=31;SAP=70.3259;SAR=0;SRF=174;SRP=380.846;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:75:60,15:60:2300:15:549:-27.1714,0,-184.638 0/1:49:33,16:33:1274:16:586:-38.3265,0,-100.198 0/0:51:51,0:51:1931:0:0:0,-15.3525,-174.033 0/0:30:30,0:30:1145:0:0:0,-9.0309,-103.348 dDocent_Contig_6247 45 . T A 1139.56 . AB=0.0612245;ABP=248.83;AC=0;AF=0;AN=8;AO=9;CIGAR=1M1D8M1X4M1X8M;DP=298;DPB=287.917;DPRA=0;EPP=22.5536;EPPR=474.22;GTI=0;LEN=1;MEANALT=4.5;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=2.77556e-17;PAIRED=1;PAIREDR=0.995392;PAO=0;PQA=0;PQR=0;PRO=0;QA=316;QR=8314;RO=217;RPL=0;RPP=22.5536;RPPR=474.22;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=217;SRP=474.22;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:98:76,0,0,22:76:2878:0,0,22:0,0,857:-47.9351,-70.8134,-306.73,-70.8134,-306.73,-306.73,0,-236.304,-236.304,-229.681 0|0:104:76,6,0,18:76:2933:6,0,18:234,0,730:-37.3402,-40.9853,-280.028,-60.2185,-281.834,-301.069,0,-221.629,-240.864,-235.446 0|0:53:45,0,0,8:45:1741:0,0,8:0,0,320:-13.2131,-26.7594,-169.754,-26.7594,-169.754,-169.754,0,-143.392,-143.392,-140.984 0|0:43:20,3,11,9:20:762:3,11,9:82,358,332:-22.8635,-22.4222,-84.0388,0,-56.0627,-59.2129,-1.72461,-57.802,-35.3855,-61.5562 dDocent_Contig_6248 98 . N T 1593 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=51;CIGAR=1X;DP=51;DPB=51;DPRA=0;EPP=113.755;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1754;QR=0;RO=0;RPL=51;RPP=113.755;RPPR=0;RPR=0;RUN=1;SAF=51;SAP=113.755;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:28:0,28:0:0:28:982:-88.6933,-8.42884,0 1/1:15:0,15:0:0:15:494:-44.772,-4.51545,0 1/1:8:0,8:0:0:8:278:-25.3577,-2.40824,0 dDocent_Contig_6249 34 . G A 1522.91 . AB=0.0384615;ABP=195.436;AC=0;AF=0;AN=8;AO=4;CIGAR=3X3M;DP=172;DPB=172;DPRA=0;EPP=11.6962;EPPR=228.843;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=152;QR=4101;RO=104;RPL=0;RPP=11.6962;RPPR=228.843;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=104;SRP=228.843;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:33:17,13,3,0:17:666:13,3,0:511,112,0:-36.9299,0,-50.8668,-32.8807,-45.6125,-86.7415,-42.0475,-54.7802,-87.6446,-96.8133 0|0:42:24,18,0,0:24:942:18,0,0:714,0,0:-51.9473,0,-72.4463,-59.172,-77.8648,-136.642,-59.172,-77.8648,-136.642,-136.642 0|0:71:50,15,1,5:50:1980:15,1,5:587,40,198:-33.205,0,-158.445,-44.9611,-159.665,-207.624,-31.9613,-146.666,-191.63,-193.42 0|0:26:13,13,0,0:13:513:13,0,0:501,0,0:-37.6063,0,-38.6903,-41.5197,-42.6037,-83.7338,-41.5197,-42.6037,-83.7338,-83.7338 dDocent_Contig_6251 1 . N G 105.366 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=113;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:113:-10.536,-0.90309,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_6252 8 . A G 4629.77 . AB=0.347319;ABP=89.8743;AC=4;AF=0.5;AN=8;AO=149;CIGAR=1X3M1X;DP=429;DPB=429;DPRA=0;EPP=326.56;EPPR=315.702;GTI=0;LEN=1;MEANALT=3.5;MQM=55.1275;MQMR=59.9722;NS=4;NUMALT=4;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=5750;QR=5548;RO=144;RPL=0;RPP=326.56;RPPR=315.702;RPR=149;RUN=1;SAF=149;SAP=326.56;SAR=0;SRF=144;SRP=315.702;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:122:26,39,42,10,5:26:986:39,42,10,5:1516,1608,388,204:-166.822,-50.795,-119.894,-43.0163,0,-111.211,-142.808,-99.7927,-92.0131,-220.637,-157.874,-114.859,-107.079,-206.873,-237.209 0|1:119:39,14,49,13,4:39:1495:14,49,13,4:547,1895,503,163:-143.431,-110.202,-228.681,0,-77.7207,-107.94,-113.86,-191.583,-81.3788,-232.639,-141.726,-219.45,-109.245,-223.108,-263.215 0|1:122:57,17,28,9,11:57:2216:17,28,9,11:668,1083,347,446:-71.4291,-33.6436,-210.625,0,-127.152,-173.667,-60.0999,-187.254,-153.608,-239.489,-51.8182,-178.974,-145.327,-205.43,-230.607 0|1:66:22,0,30,14,0:22:851:0,30,14,0:0,1164,536,0:-88.6926,-95.3153,-165.215,0,-69.902,-60.8711,-51.3364,-121.236,-25.9234,-117.022,-95.3153,-165.215,-69.902,-121.236,-165.215 dDocent_Contig_6253 180 . C A 575.386 . AB=0.118644;ABP=152.069;AC=1;AF=0.125;AN=8;AO=14;CIGAR=6M1X2M;DP=214;DPB=189.889;DPRA=0;EPP=33.4109;EPPR=367.818;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=523;QR=6411;RO=168;RPL=14;RPP=33.4109;RPPR=367.818;RPR=0;RUN=1;SAF=0;SAP=33.4109;SAR=14;SRF=0;SRP=367.818;SRR=168;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:63:43,7,13:43:1646:7,13:246,485:-26.7734,-19.713,-152.677,0,-115.083,-131.178 0|0:46:35,11,0:35:1348:11,0:422,0:-24.482,0,-107.75,-35.018,-111.061,-145.696 0|0:55:48,6,1:48:1803:6,1:225,38:-3.97591,0,-145.884,-15.3081,-144.574,-162.702 0|0:50:42,7,0:42:1614:7,0:269,0:-9.7041,0,-130.683,-22.3474,-132.79,-154.872 dDocent_Contig_6254 43 . C T 1652.54 . AB=0.291304;ABP=90.0203;AC=4;AF=0.5;AN=8;AO=67;CIGAR=1X;DP=230;DPB=230;DPRA=0;EPP=148.499;EPPR=348.328;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.985075;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2673;QR=6488;RO=163;RPL=0;RPP=148.499;RPPR=348.328;RPR=67;RUN=1;SAF=67;SAP=148.499;SAR=0;SRF=163;SRP=356.96;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:94:65,29:65:2603:29:1161:-76.4737,0,-206.1 0/1:54:35,19:35:1401:19:756:-52.1046,0,-110.09 0/1:47:39,8:39:1535:8:321:-15.1086,0,-124.237 0/1:35:24,11:24:949:11:435:-28.9647,0,-75.1723 dDocent_Contig_6255 209 . N G 151.028 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=149;QR=0;RO=0;RPL=4;RPP=11.6962;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:78:-7.40347,-0.60206,0 1/1:1:0,1:0:0:1:39:-3.89656,-0.30103,0 1/1:1:0,1:0:0:1:32:-3.19931,-0.30103,0 ./.:.:.:.:.:.:.:. dDocent_Contig_6256 26 . A G 201.095 . AB=0.222222;ABP=33.1696;AC=2;AF=0.25;AN=8;AO=10;CIGAR=1X;DP=113;DPB=113;DPRA=0.661765;EPP=24.725;EPPR=226.672;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=399;QR=4111;RO=103;RPL=0;RPP=24.725;RPPR=226.672;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=103;SRP=226.672;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:17,8:17:683:8:318:-21.46,0,-54.2717 0/0:39:39,0:39:1533:0:0:0,-11.7402,-138.205 0/0:29:29,0:29:1169:0:0:0,-8.72987,-105.486 0/1:20:18,2:18:726:2:81:-1.66513,0,-59.6451 dDocent_Contig_6257 69 . C A 152 . AB=0.10929;ABP=245.658;AC=1;AF=0.125;AN=8;AO=47;CIGAR=1X;DP=683;DPB=683;DPRA=0;EPP=105.07;EPPR=1377.55;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1862;QR=24825;RO=633;RPL=47;RPP=105.07;RPPR=1377.55;RPR=0;RUN=1;SAF=47;SAP=105.07;SAR=0;SRF=633;SRP=1377.55;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:183:163,20:163:6371:20:793:-16.5979,0,-518.072 0/0:197:191,6:191:7558:6:237:0,-37.6009,-658.165 0/0:202:185,14:185:7169:14:562:0,-9.29929,-593.986 0/0:101:94,7:94:3727:7:270:0,-5.74319,-310.779 dDocent_Contig_6258 20 . T C 374.772 . AB=0.242424;ABP=41.044;AC=1;AF=0.125;AN=8;AO=19;CIGAR=1X;DP=208;DPB=208;DPRA=4.77778;EPP=44.2683;EPPR=413.419;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.989418;PAO=0;PQA=0;PQR=0;PRO=0;QA=771;QR=7279;RO=189;RPL=0;RPP=44.2683;RPPR=413.419;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=189;SRP=413.419;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:66:50,16:50:1919:16:649:-38.8751,0,-153.064 0/0:106:103,3:103:3969:3:122:0,-20.5367,-345.9 0/0:22:22,0:22:847:0:0:0,-6.62266,-76.5471 0/0:14:14,0:14:544:0:0:0,-4.21442,-49.3029 dDocent_Contig_6259 25 . T G 1303.79 . AB=0.261905;ABP=106.414;AC=4;AF=0.5;AN=8;AO=55;CIGAR=1X;DP=210;DPB=210;DPRA=0;EPP=122.441;EPPR=339.589;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2218;QR=6226;RO=155;RPL=0;RPP=122.441;RPPR=339.589;RPR=55;RUN=1;SAF=55;SAP=122.441;SAR=0;SRF=155;SRP=339.589;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:48:39,9:39:1550:9:368:-19.0359,0,-125.276 0/1:39:30,9:30:1208:9:366:-21.565,0,-97.2532 0/1:91:69,22:69:2776:22:892:-53.1935,0,-222.546 0/1:32:17,15:17:692:15:592:-43.9823,0,-52.9755 dDocent_Contig_6260 1 . N G 259.069 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=7;CIGAR=1X;DP=7;DPB=7;DPRA=0;EPP=18.2106;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=57.7143;MQMR=0;NS=1;NUMALT=1;ODDS=9.4572;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=284;QR=0;RO=0;RPL=0;RPP=18.2106;RPPR=0;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:7:0,7:0:0:7:284:-25.9069,-2.10721,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_6261 10 . A G 34.6789 . AB=0.15;ABP=24.2907;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=187;DPB=187;DPRA=0.359281;EPP=9.52472;EPPR=402.561;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=120;QR=7311;RO=184;RPL=0;RPP=9.52472;RPPR=402.561;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=184;SRP=402.561;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:99:99,0:99:3917:0:0:0,-29.802,-352.523 0/1:20:17,3:17:668:3:120:-5.16671,0,-54.4299 0/0:50:50,0:50:2009:0:0:0,-15.0515,-180.997 0/0:18:18,0:18:717:0:0:0,-5.41854,-64.8578 dDocent_Contig_6262 25 . T C 32299.8 . AB=0.863782;ABP=720.278;AC=6;AF=0.75;AN=8;AO=981;CIGAR=1X1M;DP=1093;DPB=1093;DPRA=0;EPP=2133.22;EPPR=191.928;GTI=0;LEN=1;MEANALT=1.75;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=39013;QR=3439;RO=87;RPL=0;RPP=2133.22;RPPR=191.928;RPR=981;RUN=1;SAF=981;SAP=2133.22;SAR=0;SRF=87;SRP=191.928;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:338:32,23,283:32:1276:23,283:911,11204:-912.389,-847.048,-945.204,0,-30.1072,-19.8893 1|1:283:17,0,265:17:673:0,265:0,10539:-886.907,-892.025,-947.413,-24.3703,-79.773,0 0|1:286:29,0,256:29:1127:0,256:0,10230:-833.849,-842.579,-935.167,0,-92.5973,-15.5336 1|1:186:9,0,177:9:363:0,177:0,7040:-600.231,-602.94,-632.862,-22.9573,-53.2823,0 dDocent_Contig_6263 31 . G A 981.716 . AB=0.162983;ABP=360.14;AC=3;AF=0.375;AN=8;AO=59;CIGAR=1X;DP=488;DPB=488;DPRA=0.957672;EPP=131.127;EPPR=934.572;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2348;QR=16992;RO=429;RPL=0;RPP=131.127;RPPR=934.572;RPR=59;RUN=1;SAF=59;SAP=131.127;SAR=0;SRF=429;SRP=934.572;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:126:126,0:126:4990:0:0:0,-37.9298,-448.997 0/1:93:77,16:77:3066:16:637:-29.6695,0,-248.031 0/1:136:124,12:124:4913:12:471:-1.79906,0,-401.142 0/1:133:102,31:102:4023:31:1240:-71.8365,0,-322.005 dDocent_Contig_6264 11 . T C 57.4642 . AB=0.118644;ABP=77.5396;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=355;DPB=355;DPRA=0.597973;EPP=18.2106;EPPR=758.683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.9828;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.997126;PAO=0;PQA=0;PQR=0;PRO=0;QA=276;QR=13864;RO=348;RPL=0;RPP=18.2106;RPPR=758.683;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=348;SRP=758.683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:118:118,0:118:4713:0:0:0,-35.5215,-424.075 0/0:107:107,0:107:4267:0:0:0,-32.2102,-383.992 0/0:71:71,0:71:2821:0:0:0,-21.3731,-254.005 0/1:59:52,7:52:2063:7:276:-7.44539,0,-168.099 dDocent_Contig_6265 70 . T C 70.7355 . AB=0.115385;ABP=103.232;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X;DP=233;DPB=233;DPRA=1.50968;EPP=22.5536;EPPR=489.42;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.995536;PAO=0;PQA=0;PQR=0;PRO=0;QA=351;QR=8502;RO=224;RPL=9;RPP=22.5536;RPPR=489.42;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=224;SRP=489.42;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:78:69,9:69:2608:9:351:-8.47149,0,-211.429 0/0:81:81,0:81:3087:0:0:0,-24.3834,-277.986 0/0:30:30,0:30:1139:0:0:0,-9.0309,-102.81 0/0:44:44,0:44:1668:0:0:0,-13.2453,-150.38 dDocent_Contig_6266 65 . C A 61.4802 . AB=0.108696;ABP=125.368;AC=1;AF=0.125;AN=8;AO=10;CIGAR=1X;DP=301;DPB=301;DPRA=1.32057;EPP=24.725;EPPR=634.909;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=391;QR=11383;RO=291;RPL=10;RPP=24.725;RPPR=634.909;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=291;SRP=634.909;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:105:105,0:105:4066:0:0:0,-31.6081,-365.936 0/1:92:82,10:82:3204:10:391:-7.84699,0,-260.74 0/0:61:61,0:61:2372:0:0:0,-18.3628,-213.622 0/0:43:43,0:43:1741:0:0:0,-12.9443,-156.904 dDocent_Contig_6267 196 . G A 36.2092 . AB=0.137931;ABP=36.0317;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=93;DPB=93;DPRA=2.05128;EPP=18.2106;EPPR=187.585;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=267;QR=3294;RO=85;RPL=7;RPP=18.2106;RPPR=187.585;RPR=0;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=187.585;SRR=85;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:30:28,2:28:1089:2:78:0,-1.62743,-90.9103 0/1:29:25,4:25:951:4:152:-5.31976,0,-77.1713 0/0:21:20,1:20:790:1:37:0,-2.6238,-67.7262 0/0:13:12,0:12:464:0:0:0,-3.61236,-41.9891 dDocent_Contig_6268 154 . C T 457.06 . AB=0.253012;ABP=46.9892;AC=1;AF=0.125;AN=8;AO=31;CIGAR=1X;DP=293;DPB=293;DPRA=0;EPP=70.3259;EPPR=571.936;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1184;QR=10041;RO=262;RPL=0;RPP=70.3259;RPPR=571.936;RPR=31;RUN=1;SAF=0;SAP=70.3259;SAR=31;SRF=0;SRP=571.936;SRR=262;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:102:97,5:97:3734:5:184:0,-13.7922,-319.158 0/1:83:62,21:62:2338:21:801:-47.405,0,-185.585 0/0:66:62,4:62:2404:4:158:0,-5.2675,-201.903 0/0:42:41,1:41:1565:1:41:0,-8.54869,-136.984 dDocent_Contig_6269 24 . G A 79.5323 . AB=0.166667;ABP=37.7539;AC=2;AF=0.25;AN=8;AO=8;CIGAR=1X;DP=103;DPB=103;DPRA=0.987179;EPP=20.3821;EPPR=209.3;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=319;QR=3766;RO=95;RPL=0;RPP=20.3821;RPPR=209.3;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=95;SRP=209.3;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:41:39,2:39:1562:2:81:0,-4.6565,-133.131 0/0:26:26,0:26:1031:0:0:0,-7.82678,-93.079 0/1:27:23,4:23:897:4:159:-6.56302,0,-72.9068 0/1:9:7,2:7:276:2:79:-4.78797,0,-22.4973 dDocent_Contig_6272 59 . G A 123.133 . AB=0.179487;ABP=37.8095;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=136;DPB=136;DPRA=0.7;EPP=20.3821;EPPR=280.959;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=323;QR=5009;RO=128;RPL=8;RPP=20.3821;RPPR=280.959;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=128;SRP=280.959;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:48:48,0:48:1861:0:0:0,-14.4494,-167.707 0/1:39:32,7:32:1274:7:282:-14.0122,0,-103.191 0/0:32:32,0:32:1252:0:0:0,-9.63296,-112.954 0/0:17:16,1:16:622:1:41:0,-1.02294,-52.2152 dDocent_Contig_6274 46 . T C 706.977 . AB=0.171271;ABP=342.792;AC=3;AF=0.375;AN=8;AO=68;CIGAR=1X;DP=480;DPB=480;DPRA=0;EPP=133.81;EPPR=888.992;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.941176;PAIREDR=0.995146;PAO=0;PQA=0;PQR=0;PRO=0;QA=2231;QR=12724;RO=412;RPL=4;RPP=117.971;RPPR=880.369;RPR=64;RUN=1;SAF=66;SAP=133.81;SAR=2;SRF=411;SRP=888.992;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:163:144,19:144:4426:19:622:-7.22168,0,-349.483 0/0:118:112,6:112:3419:6:185:0,-18.5673,-290.989 0/1:133:118,15:118:3695:15:515:-6.63999,0,-292.747 0/1:66:38,28:38:1184:28:909:-62.2339,0,-86.978 dDocent_Contig_6275 11 . G A 1751.97 . AB=0.20936;ABP=300.898;AC=4;AF=0.5;AN=8;AO=85;CIGAR=1X;DP=406;DPB=406;DPRA=0;EPP=187.585;EPPR=700.053;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3373;QR=12587;RO=321;RPL=0;RPP=187.585;RPPR=700.053;RPR=85;RUN=1;SAF=85;SAP=187.585;SAR=0;SRF=321;SRP=700.053;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:142:119,23:119:4689:23:913:-39.7254,0,-379.193 0/1:113:91,22:91:3515:22:885:-45.9428,0,-282.376 0/1:97:67,30:67:2660:30:1173:-76.6427,0,-210.339 0/1:54:44,10:44:1723:10:402:-20.2839,0,-139.037 dDocent_Contig_6276 43 . T A 242.765 . AB=0.174419;ABP=82.1933;AC=2;AF=0.25;AN=8;AO=15;CIGAR=1X;DP=176;DPB=176;DPRA=0.955556;EPP=35.5824;EPPR=352.617;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=587;QR=6508;RO=161;RPL=0;RPP=35.5824;RPPR=352.617;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=161;SRP=352.617;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:50:39,11:39:1583:11:424:-23.4524,0,-127.646 0/1:36:32,4:32:1291:4:163:-4.22135,0,-105.614 0/0:52:52,0:52:2103:0:0:0,-15.6536,-189.44 0/0:38:38,0:38:1531:0:0:0,-11.4391,-138.025 dDocent_Contig_6277 44 . G A 637.397 . AB=0.129555;ABP=297.425;AC=1;AF=0.125;AN=8;AO=41;CIGAR=2M1X2M;DP=446;DPB=446;DPRA=0;EPP=92.0407;EPPR=782.569;GTI=0;LEN=1;MEANALT=2.66667;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1572;QR=13751;RO=359;RPL=0;RPP=92.0407;RPPR=782.569;RPR=41;RUN=1;SAF=41;SAP=92.0407;SAR=0;SRF=359;SRP=782.569;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:138:122,0,7,9:122:4680:0,7,9:0,279,340:0,-36.7257,-420.811,-13.7404,-397.834,-395.727,-8.8731,-392.947,-369.97,-390.238 0|0:142:104,0,21,17:104:3985:0,21,17:0,825,630:-36.5586,-67.8657,-394.892,0,-327.036,-320.715,-16.3506,-343.368,-275.513,-338.251 0|1:105:82,6,1,15:82:3123:6,1,15:220,41,602:-24.9564,-31.6707,-286.003,-46.2555,-284.425,-302.098,0,-238.203,-252.793,-251.662 0|0:61:51,2,7,0:51:1963:2,7,0:80,279,0:-7.62264,-16.3848,-176.922,0,-154.546,-159.03,-22.9752,-177.524,-161.137,-184.115 dDocent_Contig_6278 12 . G A 4852.07 . AB=0.349817;ABP=109.977;AC=4;AF=0.5;AN=8;AO=191;CIGAR=1X1M1X;DP=546;DPB=546;DPRA=0;EPP=383.746;EPPR=765.197;GTI=0;LEN=1;MEANALT=1.75;MQM=59.0262;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.95288;PAIREDR=0.997151;PAO=0;PQA=0;PQR=0;PRO=0;QA=7331;QR=13785;RO=351;RPL=0;RPP=417.762;RPPR=765.197;RPR=191;RUN=1;SAF=187;SAP=383.746;SAR=4;SRF=351;SRP=765.197;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:141:88,52:88:3500:52:2005:-138.131,0,-272.515 0|1:178:142,36:142:5560:36:1378:-70.6698,0,-446.693 0|1:142:81,58:81:3152:58:2214:-153.085,0,-241.622 0|1:85:40,45:40:1573:45:1734:-130.719,0,-116.231 dDocent_Contig_6280 12 . C T 490.648 . AB=0.221477;ABP=103.408;AC=4;AF=0.5;AN=8;AO=33;CIGAR=1X;DP=149;DPB=149;DPRA=0;EPP=66.2462;EPPR=254.901;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.606061;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1111;QR=4621;RO=116;RPL=0;RPP=74.6689;RPPR=254.901;RPR=33;RUN=1;SAF=32;SAP=66.2462;SAR=1;SRF=116;SRP=254.901;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:52:45,7:45:1794:7:222:-4.63836,0,-146.018 0/1:44:38,6:38:1502:6:210:-5.99639,0,-122.189 0/1:43:26,17:26:1040:17:571:-38.7629,0,-80.9505 0/1:10:7,3:7:285:3:108:-7.06487,0,-23.0141 dDocent_Contig_6282 2 . A G 345.307 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=11;CIGAR=1X2I1X;DP=12;DPB=24;DPRA=0;EPP=26.8965;EPPR=0;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=0.363636;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=366;QR=0;RO=0;RPL=0;RPP=26.8965;RPPR=0;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:5:0,5:0:0:5:167:-15.3596,-1.50515,0 1|1:1:0,1:0:0:1:34:-3.39891,-0.30103,0 1|1:3:0,2:0:0:2:68:-6.11804,-0.60206,0 1|1:3:0,3:0:0:3:97:-9.0511,-0.90309,0 dDocent_Contig_6283 178 . G A 584.366 . AB=0.223022;ABP=95.6338;AC=1;AF=0.125;AN=8;AO=31;CIGAR=1X;DP=404;DPB=404;DPRA=1.57358;EPP=70.3259;EPPR=810.798;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1125;QR=14068;RO=372;RPL=31;RPP=70.3259;RPPR=810.798;RPR=0;RUN=1;SAF=0;SAP=70.3259;SAR=31;SRF=0;SRP=810.798;SRR=372;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:139:107,31:107:4041:31:1125:-59.8345,0,-322.002 0/0:92:92,0:92:3497:0:0:0,-27.6948,-314.792 0/0:97:97,0:97:3676:0:0:0,-29.1999,-330.887 0/0:76:76,0:76:2854:0:0:0,-22.8783,-256.976 dDocent_Contig_6284 163 . G C 135.708 . AB=0.205128;ABP=32.4644;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=113;DPB=113;DPRA=1.58108;EPP=20.3821;EPPR=231.015;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=293;QR=4090;RO=105;RPL=8;RPP=20.3821;RPPR=231.015;RPR=0;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=231.015;SRR=105;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:39:31,8:31:1208:8:293:-14.9687,0,-97.2564 0/0:32:32,0:32:1238:0:0:0,-9.63296,-111.687 0/0:24:24,0:24:970:0:0:0,-7.22472,-87.598 0/0:18:18,0:18:674:0:0:0,-5.41854,-60.9701 dDocent_Contig_6285 36 . C G 1583.66 . AB=0.184615;ABP=396.114;AC=3;AF=0.375;AN=8;AO=88;CIGAR=1X;DP=527;DPB=527;DPRA=0;EPP=194.1;EPPR=956.287;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=2.77556e-17;PAIRED=1;PAIREDR=0.98861;PAO=0;PQA=0;PQR=0;PRO=0;QA=3495;QR=17686;RO=439;RPL=0;RPP=194.1;RPPR=956.287;RPR=88;RUN=1;SAF=88;SAP=194.1;SAR=0;SRF=439;SRP=956.287;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:153:127,26:127:5181:26:1037:-47.5648,0,-420.044 0/1:154:128,26:128:5159:26:1037:-47.2631,0,-417.787 0/1:148:116,32:116:4661:32:1258:-68.9363,0,-374.843 0/0:72:68,4:68:2685:4:163:0,-6.61573,-226.715 dDocent_Contig_6287 108 . A G 541.681 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=20;CIGAR=1X;DP=22;DPB=22;DPRA=0;EPP=46.4397;EPPR=5.18177;GTI=0;LEN=1;MEANALT=1.25;MQM=40;MQMR=40;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=605;QR=7;RO=1;RPL=0;RPP=46.4397;RPPR=5.18177;RPR=20;RUN=1;SAF=0;SAP=46.4397;SAR=20;SRF=0;SRP=5.18177;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:5:0,4:0:0:4:130:-11.5346,-1.20412,0 1/1:3:1,2:1:7:2:63:-5.16125,-0.203264,0 1/1:13:0,13:0:0:13:383:-34.002,-3.91339,0 1/1:1:0,1:0:0:1:29:-2.86684,-0.30103,0 dDocent_Contig_6288 20 . T G 2742.8 . AB=0.324242;ABP=91.5537;AC=4;AF=0.5;AN=8;AO=107;CIGAR=1X;DP=330;DPB=330;DPRA=0;EPP=235.358;EPPR=485.077;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4220;QR=8856;RO=222;RPL=0;RPP=235.358;RPPR=485.077;RPR=107;RUN=1;SAF=107;SAP=235.358;SAR=0;SRF=222;SRP=485.077;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:117:68,49:68:2731:49:1922:-137.972,0,-210.689 0/1:115:81,33:81:3205:33:1307:-83.3284,0,-253.964 0/1:59:39,20:39:1555:20:797:-54.2888,0,-122.434 0/1:39:34,5:34:1365:5:194:-6.08925,0,-111.371 dDocent_Contig_6289 176 . A T 191.084 . AB=0.2;ABP=49.9141;AC=2;AF=0.25;AN=8;AO=12;CIGAR=1X;DP=87;DPB=87;DPRA=2.22222;EPP=29.068;EPPR=165.871;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=443;QR=2939;RO=75;RPL=12;RPP=29.068;RPPR=165.871;RPR=0;RUN=1;SAF=0;SAP=29.068;SAR=12;SRF=0;SRP=165.871;SRR=75;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:19:19,0:19:741:0:0:0,-5.71957,-67.0092 0/1:18:15,3:15:576:3:113:-5.11748,0,-46.7522 0/1:42:33,9:33:1304:9:330:-17.3888,0,-104.982 0/0:8:8,0:8:318:0:0:0,-2.40824,-28.9868 dDocent_Contig_6290 11 . G A 97.0829 . AB=0.134752;ABP=166.394;AC=1;AF=0.125;AN=8;AO=25;CIGAR=1X;DP=356;DPB=356;DPRA=1.18803;EPP=57.2971;EPPR=721.768;GTI=0;LEN=1;MEANALT=1;MQM=31;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1006;QR=13194;RO=331;RPL=0;RPP=57.2971;RPPR=721.768;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=331;SRP=721.768;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:141:122,19:122:4882:19:765:-11.1062,0,-396.82 0/0:78:78,0:78:3102:0:0:0,-23.4803,-279.263 0/0:76:71,5:71:2833:5:201:0,-11.9165,-244.119 0/0:61:60,1:60:2377:1:40:0,-14.5392,-210.261 dDocent_Contig_6291 94 . T C 2078.45 . AB=0.630769;ABP=22.3197;AC=4;AF=0.5;AN=8;AO=82;CIGAR=1X;DP=130;DPB=130;DPRA=0;EPP=181.071;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2804;QR=1662;RO=48;RPL=82;RPP=181.071;RPPR=107.241;RPR=0;RUN=1;SAF=82;SAP=181.071;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:14,2:14:485:2:64:-1.26189,0,-39.1637 0/1:78:17,61:17:590:61:2086:-164.535,0,-29.9467 0/1:18:11,7:11:379:7:238:-16.3339,0,-29.0237 0/1:18:6,12:6:208:12:416:-32.3541,0,-13.6411 dDocent_Contig_6292 33 . T C 34.7643 . AB=0.129032;ABP=40.0654;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=208;DPB=208;DPRA=0.525424;EPP=11.6962;EPPR=445.991;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.5;PAIREDR=0.921569;PAO=0;PQA=0;PQR=0;PRO=0;QA=157;QR=7954;RO=204;RPL=0;RPP=11.6962;RPPR=445.991;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=204;SRP=445.991;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:52:52,0:52:2033:0:0:0,-15.6536,-183.165 0/1:31:27,4:27:1069:4:157:-5.17525,0,-87.1713 0/0:48:48,0:48:1880:0:0:0,-14.4494,-169.42 0/0:77:77,0:77:2972:0:0:0,-23.1793,-267.576 dDocent_Contig_6293 53 . G A 454.245 . AB=0.131757;ABP=351.649;AC=2;AF=0.25;AN=8;AO=42;CIGAR=1X;DP=687;DPB=687;DPRA=0.419956;EPP=94.2121;EPPR=1403.61;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1647;QR=24989;RO=645;RPL=42;RPP=94.2121;RPPR=1403.61;RPR=0;RUN=1;SAF=42;SAP=94.2121;SAR=0;SRF=645;SRP=1403.61;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:304:304,0:304:11838:0:0:0,-91.5131,-1064.71 0/1:219:187,32:187:7137:32:1245:-46.3883,0,-576.168 0/0:87:84,3:84:3224:3:122:0,-14.8171,-278.873 0/1:77:70,7:70:2790:7:280:-2.39225,0,-228.039 dDocent_Contig_6294 14 . T C 6635.63 . AB=0.585366;ABP=26.3669;AC=4;AF=0.5;AN=8;AO=216;CIGAR=1X;DP=369;DPB=369;DPRA=0;EPP=472.048;EPPR=335.246;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=8682;QR=6125;RO=153;RPL=0;RPP=472.048;RPPR=335.246;RPR=216;RUN=1;SAF=216;SAP=472.048;SAR=0;SRF=153;SRP=335.246;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:146:53,93:53:2131:93:3759:-294.347,0,-148.012 0/1:88:38,50:38:1517:50:2028:-156.207,0,-110.279 0/1:83:42,41:42:1685:41:1610:-120.142,0,-126.888 0/1:52:20,32:20:792:32:1285:-100.264,0,-55.9401 dDocent_Contig_6295 13 . C T 125.241 . AB=0.179487;ABP=37.8095;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=154;DPB=154;DPRA=1.01739;EPP=18.2106;EPPR=322.217;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=281;QR=5868;RO=147;RPL=0;RPP=18.2106;RPPR=322.217;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=147;SRP=322.217;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:39:32,7:32:1266:7:281:-13.922,0,-102.468 0/0:57:57,0:57:2296:0:0:0,-17.1587,-206.79 0/0:37:37,0:37:1472:0:0:0,-11.1381,-132.728 0/0:21:21,0:21:834:0:0:0,-6.32163,-75.3726 dDocent_Contig_6297 9 . G C 150.509 . AB=0.13;ABP=121.92;AC=2;AF=0.25;AN=8;AO=15;CIGAR=1X1M2X;DP=269;DPB=269;DPRA=0.7875;EPP=35.5824;EPPR=545.878;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.533333;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=598;QR=9512;RO=250;RPL=0;RPP=35.5824;RPPR=545.878;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=250;SRP=545.878;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:80:80,0:80:3059:0:0:0,-24.0824,-275.453 0|0:89:86,2:86:3293:2:79:0,-19.3843,-288.989 0|1:59:51,5:51:1926:5:200:-1.12082,0,-156.317 0|1:41:33,8:33:1234:8:319:-16.7358,0,-98.9984 dDocent_Contig_6299 61 . A G 71.0393 . AB=0.217391;ABP=18.9659;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=107;DPB=107;DPRA=1.21739;EPP=20.3821;EPPR=205.047;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.958763;PAO=0;PQA=0;PQR=0;PRO=0;QA=274;QR=3432;RO=97;RPL=8;RPP=20.3821;RPPR=213.643;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=96;SRP=205.047;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:23:22,0:22:796:0:0:0,-6.62266,-71.8798 0/0:30:28,2:28:972:2:69:0,-2.47824,-81.2394 0/1:23:18,5:18:630:5:171:-8.80289,0,-50.1003 0/0:31:29,1:29:1034:1:34:0,-5.98185,-89.9651 dDocent_Contig_6300 16 . T C 441.456 . AB=0.320755;ABP=17.8009;AC=1;AF=0.125;AN=8;AO=21;CIGAR=1X;DP=252;DPB=252;DPRA=0.920398;EPP=48.6112;EPPR=504.62;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=845;QR=9241;RO=231;RPL=0;RPP=48.6112;RPPR=504.62;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=231;SRP=504.62;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:67:67,0:67:2707:0:0:0,-20.169,-243.736 0/1:53:36,17:36:1429:17:683:-45.8446,0,-112.904 0/0:79:78,1:78:3082:1:41:0,-19.6868,-273.359 0/0:53:50,3:50:2023:3:121:0,-4.6746,-170.969 dDocent_Contig_6301 65 . T C 434.11 . AB=0.186047;ABP=113.452;AC=1;AF=0.125;AN=8;AO=24;CIGAR=1X;DP=379;DPB=379;DPRA=1.548;EPP=55.1256;EPPR=773.883;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.997183;PAO=0;PQA=0;PQR=0;PRO=0;QA=926;QR=13346;RO=355;RPL=24;RPP=55.1256;RPPR=773.883;RPR=0;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=355;SRP=773.883;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:129:105,24:105:3951:24:926:-44.809,0,-316.837 0/0:83:83,0:83:3082:0:0:0,-24.9855,-277.518 0/0:104:104,0:104:3905:0:0:0,-31.3071,-351.53 0/0:63:63,0:63:2408:0:0:0,-18.9649,-216.909 dDocent_Contig_6302 98 . N C 128.103 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=5;CIGAR=1X;DP=5;DPB=5;DPRA=0;EPP=13.8677;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=128;QR=0;RO=0;RPL=5;RPP=13.8677;RPPR=0;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1:0,1:0:0:1:35:-3.49863,-0.30103,0 1/1:2:0,2:0:0:2:42:-3.9887,-0.60206,0 1/1:2:0,2:0:0:2:51:-4.84431,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_6303 106 . N A 1886.41 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=61;CIGAR=2X;DP=61;DPB=61;DPRA=0;EPP=135.47;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=2075;QR=0;RO=0;RPL=0;RPP=135.47;RPPR=0;RPR=61;RUN=1;SAF=0;SAP=135.47;SAR=61;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:22:0,22:0:0:22:753:-68.0881,-6.62266,0 1|1:11:0,11:0:0:11:355:-32.2625,-3.31133,0 1|1:19:0,19:0:0:19:656:-59.3634,-5.71957,0 1|1:9:0,9:0:0:9:311:-28.3253,-2.70927,0 dDocent_Contig_6304 9 . G T 432.855 . AB=0.321429;ABP=18.5208;AC=2;AF=0.25;AN=8;AO=23;CIGAR=1X;DP=173;DPB=173;DPRA=0.977273;EPP=52.9542;EPPR=328.731;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.986667;PAO=0;PQA=0;PQR=0;PRO=0;QA=885;QR=5649;RO=150;RPL=0;RPP=52.9542;RPPR=328.731;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=150;SRP=328.731;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:73:68,5:68:2565:5:187:0,-4.78277,-213.868 0/0:44:44,0:44:1632:0:0:0,-13.2453,-147.147 0/1:23:14,9:14:531:9:347:-24.6656,0,-41.2081 0/1:33:24,9:24:921:9:351:-22.0178,0,-73.2736 dDocent_Contig_6305 39 . T C 393.932 . AB=0.167939;ABP=128.475;AC=1;AF=0.125;AN=8;AO=22;CIGAR=1X;DP=261;DPB=261;DPRA=3.02308;EPP=50.7827;EPPR=521.992;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=888;QR=9623;RO=239;RPL=0;RPP=50.7827;RPPR=521.992;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=239;SRP=521.992;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:131:109,22:109:4376:22:888:-40.7912,0,-354.33 0/0:59:59,0:59:2371:0:0:0,-17.7608,-213.528 0/0:33:33,0:33:1335:0:0:0,-9.93399,-120.406 0/0:38:38,0:38:1541:0:0:0,-11.4391,-138.925 dDocent_Contig_6306 83 . C A 12700.5 . AB=0.61844;ABP=88.9113;AC=4;AF=0.5;AN=8;AO=436;CIGAR=1X;DP=705;DPB=705;DPRA=0;EPP=949.772;EPPR=587.136;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=16548;QR=10209;RO=269;RPL=436;RPP=949.772;RPPR=587.136;RPR=0;RUN=1;SAF=436;SAP=949.772;SAR=0;SRF=269;SRP=587.136;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:219:56,163:56:2128:163:6220:-493.809,0,-125.815 0/1:172:56,116:56:2132:116:4411:-345.284,0,-140.334 0/1:175:96,79:96:3642:79:2961:-213.986,0,-275.206 0/1:139:61,78:61:2307:78:2956:-224.373,0,-165.996 dDocent_Contig_6307 12 . T C 12697.8 . AB=0.2507;ABP=1159.33;AC=4;AF=0.5;AN=8;AO=537;CIGAR=1X;DP=2142;DPB=2142;DPRA=0;EPP=1169.09;EPPR=3477.37;GTI=0;LEN=1;MEANALT=1.75;MQM=57.8529;MQMR=58.1506;NS=4;NUMALT=1;ODDS=0;PAIRED=0.266294;PAIREDR=0.440625;PAO=0;PQA=0;PQR=0;PRO=0;QA=21484;QR=63759;RO=1600;RPL=0;RPP=1169.09;RPPR=3477.37;RPR=537;RUN=1;SAF=537;SAP=1169.09;SAR=0;SRF=1600;SRP=3477.37;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:615:479,136:479:19101:136:5425:-295.368,0,-1515 0/1:531:392,136:392:15682:136:5453:-329.731,0,-1235.5 0/1:618:438,180:438:17339:180:7198:-459.297,0,-1338.28 0/1:378:291,85:291:11637:85:3408:-192.787,0,-925.337 dDocent_Contig_6308 41 . G A 2537.07 . AB=0.74359;ABP=63.3104;AC=4;AF=0.5;AN=8;AO=87;CIGAR=1X1M1X;DP=117;DPB=117;DPRA=0;EPP=191.928;EPPR=65.983;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3279;QR=1149;RO=29;RPL=0;RPP=191.928;RPPR=65.983;RPR=87;RUN=1;SAF=87;SAP=191.928;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:19:11,8:11:432:8:288:-20.5397,0,-33.5149 0|1:60:6,53:6:240:53:1985:-160.773,0,-3.85829 0|1:24:6,18:6:238:18:703:-56.3776,0,-14.5696 0|1:14:6,8:6:239:8:303:-23.4138,0,-17.671 dDocent_Contig_6309 34 . C T 759.699 . AB=0.211765;ABP=125.686;AC=3;AF=0.375;AN=8;AO=38;CIGAR=1X;DP=208;DPB=208;DPRA=0;EPP=85.5263;EPPR=369.989;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=0.923077;PAO=0;PQA=0;PQR=0;PRO=0;QA=1541;QR=6666;RO=169;RPL=0;RPP=85.5263;RPPR=369.989;RPR=38;RUN=1;SAF=38;SAP=85.5263;SAR=0;SRF=169;SRP=369.989;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:60:50,9:50:1957:9:364:-15.2422,0,-158.479 0/1:58:40,18:40:1569:18:731:-48.6545,0,-123.998 0/1:52:43,9:43:1703:9:364:-17.4712,0,-137.842 0/0:38:36,2:36:1437:2:82:0,-3.65946,-121.804 dDocent_Contig_6310 13 . C T 164.708 . AB=0.105263;ABP=157.299;AC=2;AF=0.25;AN=8;AO=21;CIGAR=1X2M;DP=257;DPB=257;DPRA=0;EPP=48.6112;EPPR=480.734;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.990909;PAO=0;PQA=0;PQR=0;PRO=0;QA=801;QR=8767;RO=220;RPL=0;RPP=48.6112;RPPR=480.734;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=220;SRP=480.734;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:106:95,4,7:95:3767:4,7:155,267:0,-15.8615,-324.736,-6.69713,-304.036,-314.663 0|1:89:72,6,11:72:2884:6,11:232,425:-13.2326,-15.8502,-251.647,0,-218.548,-234.292 0|0:37:33,2,2:33:1320:2,2:78,72:0,-3.50732,-111.675,-4.07415,-106.404,-112.214 0|1:25:20,4,1:20:796:4,1:154,37:-6.63611,0,-64.364,-9.63267,-62.5424,-74.884 dDocent_Contig_6311 20 . C T 1298.49 . AB=0.144481;ABP=679.283;AC=3;AF=0.375;AN=8;AO=91;CIGAR=1X;DP=689;DPB=689;DPRA=0;EPP=200.614;EPPR=1301.55;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.9766;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3634;QR=24062;RO=598;RPL=0;RPP=200.614;RPPR=1301.55;RPR=91;RUN=1;SAF=91;SAP=200.614;SAR=0;SRF=598;SRP=1301.55;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:218:196,22:196:7894:22:892:-14.9605,0,-644.378 0/1:243:192,51:192:7710:51:2040:-110.639,0,-620.254 0/1:155:139,16:139:5585:16:622:-9.64731,0,-455.79 0/0:73:71,2:71:2873:2:80:0,-14.3834,-251.065 dDocent_Contig_6312 59 . T C 101.59 . AB=0.145161;ABP=70.8163;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X;DP=174;DPB=174;DPRA=1.66071;EPP=22.5536;EPPR=303.081;GTI=0;LEN=1;MEANALT=1;MQM=56.7778;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.888889;PAIREDR=0.951515;PAO=0;PQA=0;PQR=0;PRO=0;QA=340;QR=6291;RO=165;RPL=9;RPP=22.5536;RPPR=361.303;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=158;SRP=303.081;SRR=7;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:41:41,0:41:1584:0:0:0,-12.3422,-142.827 0/1:62:53,9:53:1990:9:340:-11.858,0,-160.667 0/0:46:46,0:46:1766:0:0:0,-13.8474,-159.191 0/0:25:25,0:25:951:0:0:0,-7.52575,-85.9014 dDocent_Contig_6313 16 . T G 446.825 . AB=0.24359;ABP=47.5533;AC=2;AF=0.25;AN=8;AO=21;CIGAR=5M1X1M;DP=166;DPB=169.571;DPRA=0.924242;EPP=48.6112;EPPR=302.673;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=56.8551;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.898551;PAO=0;PQA=0;PQR=0;PRO=0;QA=844;QR=5394;RO=138;RPL=0;RPP=48.6112;RPPR=302.673;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=138;SRP=302.673;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:44:42,0,2:42:1662:0,2:0,76:0,-12.6433,-148.903,-6.03106,-142.671,-142.069 0|0:44:44,0,0:44:1721:0,0:0,0:0,-13.2453,-147.628,-13.2453,-147.628,-147.628 0|1:58:39,4,12:39:1501:4,12:157,482:-27.9862,-27.0849,-144.081,0,-105.56,-114.593 0|1:20:13,0,7:13:510:0,7:0,286:-20.0942,-24.0076,-64.7467,0,-41.1379,-39.0307 dDocent_Contig_6314 30 . A C 204.195 . AB=0.363636;ABP=6.56362;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X;DP=67;DPB=67;DPRA=1.48148;EPP=22.5536;EPPR=128.956;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=352;QR=2267;RO=58;RPL=0;RPP=22.5536;RPPR=128.956;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:14,8:14:559:8:312:-21.8174,0,-44.0292 0/0:21:21,0:21:820:0:0:0,-6.32163,-74.1165 0/0:18:17,1:17:656:1:40:0,-1.42286,-55.3737 0/0:6:6,0:6:232:0:0:0,-1.80618,-21.2473 dDocent_Contig_6315 132 . A T 411.434 . AB=0.139623;ABP=301.944;AC=3;AF=0.375;AN=8;AO=38;CIGAR=1X;DP=319;DPB=319;DPRA=0;EPP=85.5263;EPPR=611.023;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1430;QR=10605;RO=280;RPL=0;RPP=85.5263;RPPR=611.023;RPR=38;RUN=1;SAF=0;SAP=85.5263;SAR=38;SRF=0;SRP=611.023;SRR=280;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:140:124,16:124:4680:16:586:-10.9195,0,-379.102 0/1:88:72,16:72:2721:16:613:-29.0185,0,-218.583 0/0:54:52,1:52:1991:1:38:0,-12.3872,-175.774 0/1:37:32,5:32:1213:5:193:-6.60338,0,-98.3245 dDocent_Contig_6317 15 . C T 439.214 . AB=0.148472;ABP=248.804;AC=4;AF=0.5;AN=8;AO=34;CIGAR=1X;DP=229;DPB=229;DPRA=0;EPP=76.8404;EPPR=426.447;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.941176;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1320;QR=7571;RO=195;RPL=0;RPP=76.8404;RPPR=426.447;RPR=34;RUN=1;SAF=34;SAP=76.8404;SAR=0;SRF=195;SRP=426.447;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:73:62,11:62:2394:11:425:-16.6271,0,-193.676 0/1:84:76,8:76:2956:8:311:-3.06733,0,-240.902 0/1:37:29,8:29:1124:8:311:-17.2146,0,-90.3189 0/1:35:28,7:28:1097:7:273:-14.4011,0,-88.4928 dDocent_Contig_6318 13 . C A 1545.17 . AB=0.26;ABP=128.087;AC=2;AF=0.25;AN=8;AO=75;CIGAR=1X;DP=426;DPB=426;DPRA=0;EPP=165.871;EPPR=765.197;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2986;QR=13943;RO=351;RPL=0;RPP=165.871;RPPR=765.197;RPR=75;RUN=1;SAF=75;SAP=165.871;SAR=0;SRF=351;SRP=765.197;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:100:95,5:95:3802:5:205:0,-11.268,-323.341 0/1:164:113,51:113:4486:51:2021:-132.7,0,-354.303 0/0:76:71,5:71:2794:5:196:0,-4.86435,-233.554 0/1:86:72,14:72:2861:14:564:-25.2142,0,-231.708 dDocent_Contig_6320 26 . G C 112.211 . AB=0.12;ABP=128.435;AC=2;AF=0.25;AN=8;AO=14;CIGAR=1X;DP=212;DPB=212;DPRA=0.721393;EPP=33.4109;EPPR=432.962;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.994949;PAO=0;PQA=0;PQR=0;PRO=0;QA=555;QR=7719;RO=198;RPL=0;RPP=33.4109;RPPR=432.962;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=198;SRP=432.962;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:55:47,8:47:1834:8:320:-12.611,0,-148.727 0/0:67:67,0:67:2630:0:0:0,-20.169,-236.85 0/0:45:43,2:43:1672:2:79:0,-6.04872,-143.226 0/1:45:41,4:41:1583:4:156:-0.870094,0,-129.166 dDocent_Contig_6321 37 . A T 736.768 . AB=0.3125;ABP=32.3252;AC=3;AF=0.375;AN=8;AO=33;CIGAR=1X1M2X;DP=134;DPB=134;DPRA=0;EPP=74.6689;EPPR=222.329;GTI=0;LEN=1;MEANALT=1;MQM=59.5152;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.831683;PAO=0;PQA=0;PQR=0;PRO=0;QA=1309;QR=3976;RO=101;RPL=0;RPP=74.6689;RPPR=222.329;RPR=33;RUN=1;SAF=33;SAP=74.6689;SAR=0;SRF=101;SRP=222.329;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:25:12,13:12:476:13:518:-39.4402,0,-35.6647 0|0:38:35,3:35:1393:3:120:0,-0.25145,-114.442 0|1:41:32,9:32:1258:9:365:-20.767,0,-101.153 0|1:30:22,8:22:849:8:306:-18.8669,0,-67.6883 dDocent_Contig_6322 26 . G A 116.446 . AB=0.123894;ABP=141.85;AC=2;AF=0.25;AN=8;AO=14;CIGAR=1X;DP=288;DPB=288;DPRA=0.645714;EPP=33.4109;EPPR=597.994;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.507299;PAO=0;PQA=0;PQR=0;PRO=0;QA=537;QR=10593;RO=274;RPL=0;RPP=33.4109;RPPR=597.994;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=274;SRP=597.994;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:103:103,0:103:4001:0:0:0,-31.0061,-360.135 0/0:72:72,0:72:2789:0:0:0,-21.6742,-251.16 0/1:77:69,8:69:2650:8:301:-4.26664,0,-215.486 0/1:36:30,6:30:1153:6:236:-10.7753,0,-93.2193 dDocent_Contig_6323 8 . A T 177.843 . AB=0.177083;ABP=89.9597;AC=3;AF=0.375;AN=8;AO=21;CIGAR=2X;DP=144;DPB=144;DPRA=0;EPP=48.6112;EPPR=270.101;GTI=0;LEN=1;MEANALT=1;MQM=34.5238;MQMR=58.6585;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.788618;PAO=0;PQA=0;PQR=0;PRO=0;QA=812;QR=4681;RO=123;RPL=0;RPP=48.6112;RPPR=270.101;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=123;SRP=270.101;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:33:29,4:29:1101:4:153:-2.6181,0,-83.4096 0|1:43:32,11:32:1242:11:425:-18.5356,0,-96.0607 0|0:48:44,4:44:1652:4:156:0,-1.78211,-136.277 0|1:20:18,2:18:686:2:78:-0.484243,0,-56.0526 dDocent_Contig_6324 1 . N G 74.0438 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=78;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:78:-7.4033,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_6326 22 . T C 942.059 . AB=0.391304;ABP=12.4515;AC=2;AF=0.25;AN=8;AO=36;CIGAR=1X;DP=149;DPB=149;DPRA=1.61404;EPP=81.1833;EPPR=248.387;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1385;QR=4542;RO=113;RPL=0;RPP=81.1833;RPPR=248.387;RPR=36;RUN=1;SAF=36;SAP=81.1833;SAR=0;SRF=113;SRP=248.387;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:27:27,0:27:1097:0:0:0,-8.12781,-99.0125 0/0:30:30,0:30:1210:0:0:0,-9.0309,-109.17 0/1:57:31,26:31:1242:26:990:-72.2324,0,-94.8854 0/1:35:25,10:25:993:10:395:-25.3715,0,-79.128 dDocent_Contig_6328 19 . A C 177.791 . AB=0.183333;ABP=55.2704;AC=2;AF=0.25;AN=8;AO=15;CIGAR=1X2M1X3M1X3M1D4M;DP=160;DPB=159.062;DPRA=0;EPP=35.5824;EPPR=315.702;GTI=0;LEN=1;MEANALT=1.25;MQM=59.4;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.875;PAO=0;PQA=0;PQR=0;PRO=0;QA=584;QR=5693;RO=144;RPL=0;RPP=35.5824;RPPR=315.702;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=144;SRP=315.702;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:55:54,1:54:2138:1:40:0,-12.561,-188.626 0|0:45:41,3:41:1619:3:118:0,-2.63308,-134.955 0|1:40:31,9:31:1227:9:346:-19.4394,0,-98.6723 0|1:20:18,2:18:709:2:80:-1.57119,0,-58.1205 dDocent_Contig_6330 117 . T C 119.184 . AB=0.145631;ABP=115.358;AC=1;AF=0.125;AN=8;AO=24;CIGAR=1X;DP=221;DPB=221;DPRA=0;EPP=55.1256;EPPR=430.79;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=803;QR=6641;RO=197;RPL=0;RPP=55.1256;RPPR=430.79;RPR=24;RUN=1;SAF=0;SAP=55.1256;SAR=24;SRF=0;SRP=430.79;SRR=197;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:103:88,15:88:2954:15:489:-13.3157,0,-235.095 0/0:54:50,4:50:1685:4:140:0,-3.31069,-138.987 0/0:33:30,3:30:1016:3:104:0,-0.230898,-82.0417 0/0:31:29,2:29:986:2:70:0,-2.68453,-82.4026 dDocent_Contig_6331 14 . A G 129.897 . AB=0.16;ABP=53.2147;AC=1;AF=0.125;AN=8;AO=11;CIGAR=1X;DP=145;DPB=145;DPRA=2.15217;EPP=26.8965;EPPR=293.988;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.9925;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.940299;PAO=0;PQA=0;PQR=0;PRO=0;QA=445;QR=5365;RO=134;RPL=0;RPP=26.8965;RPPR=293.988;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=134;SRP=293.988;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:50:42,8:42:1682:8:323:-14.3877,0,-136.555 0/0:25:25,0:25:997:0:0:0,-7.52575,-90.027 0/0:49:46,3:46:1840:3:122:0,-3.37798,-154.437 0/0:21:21,0:21:846:0:0:0,-6.32163,-76.453 dDocent_Contig_6332 30 . G A 235.632 . AB=0.150943;ABP=115.189;AC=2;AF=0.25;AN=8;AO=18;CIGAR=1X;DP=181;DPB=181;DPRA=1.6129;EPP=42.0968;EPPR=354.789;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=719;QR=6424;RO=162;RPL=0;RPP=42.0968;RPPR=354.789;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=162;SRP=354.789;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:44:42,2:42:1656:2:80:0,-5.65353,-141.678 0/1:55:50,5:50:2001:5:193:-1.18207,0,-163.724 0/1:51:39,11:39:1569:11:446:-25.2459,0,-126.208 0/0:31:31,0:31:1198:0:0:0,-9.33193,-108.088 dDocent_Contig_6333 21 . T C 1616.5 . AB=0.487179;ABP=3.17734;AC=4;AF=0.5;AN=8;AO=57;CIGAR=1X;DP=117;DPB=117;DPRA=0;EPP=126.784;EPPR=131.127;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.842105;PAIREDR=0.949153;PAO=0;PQA=0;PQR=0;PRO=0;QA=2254;QR=2346;RO=59;RPL=0;RPP=126.784;RPPR=131.127;RPR=57;RUN=1;SAF=57;SAP=126.784;SAR=0;SRF=59;SRP=131.127;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:17,10:17:687:10:394:-27.6874,0,-54.0294 0/1:33:17,16:17:669:16:634:-47.4601,0,-50.6054 0/1:30:8,21:8:322:21:820:-65.1278,0,-20.3514 0/1:27:17,10:17:668:10:406:-28.7728,0,-52.3165 dDocent_Contig_6334 25 . T C 113.898 . AB=0.130435;ABP=112.15;AC=2;AF=0.25;AN=8;AO=17;CIGAR=1X;DP=215;DPB=215;DPRA=1.77451;EPP=39.9253;EPPR=430.79;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=668;QR=7844;RO=197;RPL=0;RPP=39.9253;RPPR=430.79;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=197;SRP=430.79;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:89:84,5:84:3329:5:203:0,-8.13861,-281.014 0/1:62:54,7:54:2179:7:268:-5.71309,0,-177.505 0/1:30:25,5:25:995:5:197:-9.07462,0,-80.8062 0/0:34:34,0:34:1341:0:0:0,-10.235,-120.945 dDocent_Contig_6335 16 . C G 276.803 . AB=0.354839;ABP=8.68415;AC=1;AF=0.125;AN=8;AO=11;CIGAR=1X;DP=64;DPB=64;DPRA=2.81818;EPP=26.8965;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.924528;PAO=0;PQA=0;PQR=0;PRO=0;QA=423;QR=2104;RO=53;RPL=0;RPP=26.8965;RPPR=118.098;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:20,11:20:786:11:423:-29.0783,0,-61.7227 0/0:8:8,0:8:315:0:0:0,-2.40824,-28.7143 0/0:14:14,0:14:560:0:0:0,-4.21442,-50.7423 0/0:11:11,0:11:443:0:0:0,-3.31133,-40.2263 dDocent_Contig_6336 37 . C T 107.734 . AB=0.0277778;ABP=212.195;AC=0;AF=0;AN=8;AO=6;CIGAR=1X3M1X1M1X;DP=205;DPB=204.857;DPRA=0;EPP=16.0391;EPPR=385.189;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=0.994318;PAO=0;PQA=0;PQR=0;PRO=0;QA=239;QR=6808;RO=176;RPL=0;RPP=16.0391;RPPR=385.189;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=176;SRP=385.189;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:77:62,1,4,8:62:2429:1,4,8:41,157,326:-8.24463,-23.5234,-222.956,-13.9993,-210.346,-212.527,0,-196.36,-186.834,-197.336 0|0:69:65,2,2,0:65:2481:2,2,0:79,82,0:0,-13.0734,-215.972,-12.7914,-209.805,-215.704,-19.5669,-216.574,-216.306,-223.075 0|0:31:25,2,4,0:25:956:2,4,0:80,163,0:-5.92652,-6.86458,-84.678,0,-71.8293,-77.2167,-13.4523,-85.2801,-78.4208,-91.8712 0|0:28:24,1,2,0:24:942:1,2,0:39,78,0:0,-4.01884,-81.1944,-0.813131,-75.084,-77.6877,-7.22472,-81.4954,-78.2898,-84.7012 dDocent_Contig_6337 15 . A T 1008.56 . AB=0.180921;ABP=271.844;AC=3;AF=0.375;AN=8;AO=58;CIGAR=1X;DP=370;DPB=370;DPRA=0;EPP=128.956;EPPR=680.51;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2290;QR=12153;RO=312;RPL=0;RPP=128.956;RPPR=680.51;RPR=58;RUN=1;SAF=58;SAP=128.956;SAR=0;SRF=312;SRP=680.51;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:133:94,39:94:3668:39:1536:-98.4575,0,-290.152 0/1:112:101,11:101:3953:11:435:-5.78987,0,-322.091 0/1:59:54,5:54:2089:5:202:-0.801309,0,-170.459 0/0:66:63,3:63:2443:3:117:0,-8.95777,-209.13 dDocent_Contig_6338 60 . C G 2183.76 . AB=0.365546;ABP=40.3815;AC=4;AF=0.5;AN=8;AO=87;CIGAR=1X;DP=238;DPB=238;DPRA=0;EPP=191.928;EPPR=330.903;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3291;QR=5644;RO=151;RPL=87;RPP=191.928;RPPR=330.903;RPR=0;RUN=1;SAF=87;SAP=191.928;SAR=0;SRF=151;SRP=330.903;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:95:58,37:58:2181:37:1403:-97.9409,0,-167.916 0/1:35:27,8:27:1016:8:292:-16.0918,0,-81.2046 0/1:53:43,10:43:1604:10:370:-17.6819,0,-128.677 0/1:55:23,32:23:843:32:1226:-94.059,0,-59.6277 dDocent_Contig_6339 172 . C T 955.387 . AB=0.238636;ABP=107.438;AC=2;AF=0.25;AN=8;AO=47;CIGAR=1X;DP=320;DPB=320;DPRA=1.64198;EPP=105.07;EPPR=595.822;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1881;QR=10810;RO=273;RPL=47;RPP=105.07;RPPR=595.822;RPR=0;RUN=1;SAF=0;SAP=105.07;SAR=47;SRF=0;SRP=595.822;SRR=273;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:87:56,31:56:2231:31:1240:-85.6828,0,-174.761 0/0:90:85,5:85:3388:5:200:0,-8.71367,-286.585 0/1:89:78,11:78:3064:11:441:-13.2539,0,-249.046 0/0:54:54,0:54:2127:0:0:0,-16.2556,-191.619 dDocent_Contig_6340 85 . A C 32.585 . AB=0.16;ABP=28.1125;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=369;DPB=369;DPRA=0.218023;EPP=11.6962;EPPR=791.255;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=135;QR=12690;RO=363;RPL=4;RPP=11.6962;RPPR=791.255;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=363;SRP=791.255;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:114:113,0:113:3916:0:0:0,-34.0164,-352.286 0/0:177:177,0:177:6187:0:0:0,-53.2823,-556.943 0/0:53:52,0:52:1835:0:0:0,-15.6536,-165.082 0/1:25:21,4:21:752:4:135:-4.95723,0,-60.4808 dDocent_Contig_6341 11 . A G 4488.31 . AB=0.0446927;ABP=325.322;AC=0;AF=0;AN=8;AO=8;CIGAR=1X2M1X;DP=283;DPB=283;DPRA=0;EPP=20.3821;EPPR=270.101;GTI=0;LEN=1;MEANALT=2.5;MQM=13;MQMR=59.561;NS=4;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0.943089;PAO=0;PQA=0;PQR=0;PRO=0;QA=320;QR=4888;RO=123;RPL=0;RPP=20.3821;RPPR=270.101;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=123;SRP=270.101;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:65:27,6,31:27:1068:6,31:240,1196:-90.2446,-93.2035,-179.162,0,-82.7771,-78.6077 0|0:114:54,2,58:54:2139:2,58:80,2329:-175.904,-190.433,-365.635,0,-174.336,-158.604 0|0:71:31,0,40:31:1240:0,40:0,1610:-123.757,-133.089,-235.23,0,-102.542,-90.5011 0|0:33:11,0,22:11:441:0,22:0,844:-66.3231,-69.6344,-105.974,0,-36.7343,-30.1116 dDocent_Contig_6342 11 . A C 595.827 . AB=0.324324;ABP=22.847;AC=3;AF=0.375;AN=8;AO=27;CIGAR=1X;DP=120;DPB=120;DPRA=0;EPP=61.6401;EPPR=204.957;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1067;QR=3715;RO=93;RPL=0;RPP=61.6401;RPPR=204.957;RPR=27;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=93;SRP=204.957;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:41:25,16:25:991:16:628:-44.5072,0,-77.1447 0/0:46:43,3:43:1724:3:123:0,-2.38259,-143.915 0/1:23:16,7:16:649:7:278:-18.4668,0,-51.8196 0/1:10:9,1:9:351:1:38:-0.786969,0,-28.9372 dDocent_Contig_6343 9 . G C 57.1602 . AB=0.147059;ABP=39.7976;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X;DP=155;DPB=155;DPRA=1.33333;EPP=22.5536;EPPR=320.045;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.979452;PAO=0;PQA=0;PQR=0;PRO=0;QA=348;QR=5583;RO=146;RPL=0;RPP=22.5536;RPPR=320.045;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=146;SRP=320.045;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:48:45,3:45:1714:3:117:0,-3.53906,-143.604 0/0:42:41,1:41:1566:1:39:0,-8.74669,-137.311 0/1:34:29,5:29:1116:5:192:-7.41499,0,-90.5051 0/0:31:31,0:31:1187:0:0:0,-9.33193,-107.126 dDocent_Contig_6344 54 . T C 3587.55 . AB=0.432886;ABP=14.6692;AC=4;AF=0.5;AN=8;AO=129;CIGAR=1X;DP=298;DPB=298;DPRA=0;EPP=283.13;EPPR=369.989;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5053;QR=6728;RO=169;RPL=129;RPP=283.13;RPPR=369.989;RPR=0;RUN=1;SAF=129;SAP=283.13;SAR=0;SRF=169;SRP=369.989;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:82:31,51:31:1250:51:1999:-155.43,0,-88.0842 0/1:75:45,30:45:1792:30:1161:-82.1945,0,-138.91 0/1:99:69,30:69:2739:30:1179:-76.5854,0,-216.827 0/1:42:24,18:24:947:18:714:-51.9433,0,-72.8851 dDocent_Contig_6345 24 . A C 1076.71 . AB=0.293333;ABP=58.6579;AC=3;AF=0.375;AN=8;AO=47;CIGAR=1M2X3M2X2M1X;DP=198;DPB=200.182;DPRA=0;EPP=105.07;EPPR=324.388;GTI=0;LEN=1;MEANALT=1.25;MQM=59.5532;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1860;QR=5713;RO=148;RPL=0;RPP=105.07;RPPR=324.388;RPR=47;RUN=1;SAF=47;SAP=105.07;SAR=0;SRF=148;SRP=324.388;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:48:45,0,3:45:1743:0,3:0,120:0,-13.5463,-156.715,-3.26154,-146.829,-145.926 0|1:74:67,0,7:67:2592:0,7:0,277:-3.02218,-23.1912,-236.086,0,-213.289,-211.182 0|1:40:16,0,24:16:602:0,24:0,963:-74.8783,-79.6948,-129.004,0,-49.695,-42.4703 0|1:36:20,3,13:20:776:3,13:73,500:-35.1587,-36.0859,-98.9416,0,-58.7975,-59.9863 dDocent_Contig_6346 7 . A C 364.285 . AB=0.192982;ABP=96.3455;AC=3;AF=0.375;AN=8;AO=22;CIGAR=1X1M1X;DP=175;DPB=175;DPRA=0.622951;EPP=50.7827;EPPR=335.246;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.954545;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=834;QR=5828;RO=153;RPL=0;RPP=50.7827;RPPR=335.246;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=153;SRP=335.246;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:61:61,0:61:2319:0:0:0,-18.3628,-208.93 0|1:65:54,11:54:2060:11:417:-18.314,0,-166.072 0|1:30:23,7:23:880:7:263:-14.9984,0,-70.4894 0|1:19:15,4:15:569:4:154:-8.51402,0,-45.8312 dDocent_Contig_6347 37 . A G 103.973 . AB=0.139241;ABP=92.3155;AC=3;AF=0.375;AN=8;AO=11;CIGAR=1X1M1X;DP=89;DPB=89;DPRA=2.63333;EPP=26.8965;EPPR=172.385;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=427;QR=3063;RO=78;RPL=0;RPP=26.8965;RPPR=172.385;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=78;SRP=172.385;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:10:10,0:10:383:0:0:0,-3.0103,-34.822 0|1:28:24,4:24:945:4:154:-5.80351,0,-76.9273 0|1:36:31,5:31:1239:5:198:-7.36067,0,-100.949 0|1:15:13,2:13:496:2:75:-2.60489,0,-40.4632 dDocent_Contig_6348 131 . A G 4535.3 . AB=0.575;ABP=18.6449;AC=4;AF=0.5;AN=8;AO=184;CIGAR=1X;DP=320;DPB=320;DPRA=0;EPP=402.561;EPPR=298.331;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6179;QR=4669;RO=136;RPL=0;RPP=402.561;RPPR=298.331;RPR=184;RUN=1;SAF=0;SAP=402.561;SAR=184;SRF=0;SRP=298.331;SRR=136;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:44:22,22:22:771:22:751:-54.6619,0,-56.466 0/1:99:61,38:61:2139:38:1262:-84.0702,0,-162.978 0/1:96:33,63:33:1078:63:2107:-160.998,0,-68.4095 0/1:81:20,61:20:681:61:2059:-161.198,0,-37.2214 dDocent_Contig_6349 158 . G A 855.08 . AB=0.375;ABP=17.1249;AC=3;AF=0.375;AN=8;AO=40;CIGAR=1X;DP=112;DPB=112;DPRA=0;EPP=51.8684;EPPR=159.356;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.95;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1370;QR=2781;RO=72;RPL=35;RPP=51.8684;RPPR=159.356;RPR=5;RUN=1;SAF=0;SAP=89.8692;SAR=40;SRF=0;SRP=159.356;SRR=72;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:19,7:19:716:7:252:-15.1983,0,-56.9278 0/1:34:15,19:15:595:19:640:-47.6721,0,-43.6532 0/1:44:31,13:31:1205:13:455:-28.0348,0,-95.4886 0/0:8:7,1:7:265:1:23:0,-0.108326,-21.9085 dDocent_Contig_6350 16 . A C 83.376 . AB=0.2;ABP=26.4622;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X;DP=159;DPB=159;DPRA=1.89091;EPP=22.5536;EPPR=328.731;GTI=0;LEN=1;MEANALT=1;MQM=35.5556;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=358;QR=5930;RO=150;RPL=0;RPP=22.5536;RPPR=328.731;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=150;SRP=328.731;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:74:71,3:71:2820:3:115:0,-13.0448,-244.677 0/0:33:33,0:33:1263:0:0:0,-9.93399,-113.937 0/0:22:22,0:22:889:0:0:0,-6.62266,-80.3183 0/1:30:24,6:24:958:6:243:-10.0366,0,-77.4913 dDocent_Contig_6352 40 . A T 203.565 . AB=0.444444;ABP=3.49285;AC=1;AF=0.125;AN=8;AO=10;CIGAR=3X;DP=76;DPB=76;DPRA=2.2;EPP=24.725;EPPR=144.156;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=378;QR=2475;RO=65;RPL=0;RPP=24.725;RPPR=144.156;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=65;SRP=144.156;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:18:17,1:17:660:1:39:0,-1.52198,-55.8396 0|0:30:29,1:29:1103:1:37:0,-5.33307,-95.8693 0|1:18:9,8:9:344:8:302:-22.0554,0,-25.8355 0|0:10:10,0:10:368:0:0:0,-3.0103,-33.4599 dDocent_Contig_6353 10 . T A 38.277 . AB=0.116279;ABP=58.0041;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=164;DPB=164;DPRA=1.06612;EPP=13.8677;EPPR=348.274;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=201;QR=6408;RO=159;RPL=0;RPP=13.8677;RPPR=348.274;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=159;SRP=348.274;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:49:49,0:49:1973:0:0:0,-14.7505,-177.759 0/0:64:64,0:64:2577:0:0:0,-19.2659,-232.051 0/1:43:38,5:38:1542:5:201:-5.5266,0,-126.07 0/0:8:8,0:8:316:0:0:0,-2.40824,-28.8027 dDocent_Contig_6354 8 . A G 382.341 . AB=0.25;ABP=44.2683;AC=4;AF=0.5;AN=8;AO=19;CIGAR=1X;DP=76;DPB=76;DPRA=0;EPP=44.2683;EPPR=124.613;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.631579;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=732;QR=2158;RO=56;RPL=0;RPP=44.2683;RPPR=124.613;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:22,5:22:858:5:191:-9.43071,0,-69.4118 0/1:10:9,1:9:351:1:38:-0.786969,0,-28.9415 0/1:19:13,6:13:492:6:233:-15.6205,0,-38.9043 0/1:20:12,7:12:457:7:270:-18.5742,0,-35.3887 dDocent_Contig_6355 15 . G A 158.048 . AB=0.119205;ABP=193.194;AC=1;AF=0.125;AN=8;AO=36;CIGAR=1X;DP=588;DPB=588;DPRA=0;EPP=81.1833;EPPR=1201.66;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1406;QR=22054;RO=552;RPL=0;RPP=81.1833;RPPR=1201.66;RPR=36;RUN=1;SAF=36;SAP=81.1833;SAR=0;SRF=552;SRP=1201.66;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:202:192,10:192:7690:10:391:0,-25.2627,-656.145 0/0:169:166,3:166:6673:3:117:0,-39.9642,-589.351 0/1:151:133,18:133:5290:18:696:-17.5037,0,-430.492 0/0:66:61,5:61:2401:5:202:0,-1.3059,-197.672 dDocent_Contig_6356 75 . A T 1210.53 . AB=0.365672;ABP=24.012;AC=4;AF=0.5;AN=8;AO=49;CIGAR=1X;DP=134;DPB=134;DPRA=0;EPP=109.412;EPPR=187.585;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1860;QR=3198;RO=85;RPL=49;RPP=109.412;RPPR=187.585;RPR=0;RUN=1;SAF=49;SAP=109.412;SAR=0;SRF=85;SRP=187.585;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:52:27,25:27:999:25:944:-69.6191,0,-74.5596 0/1:44:35,9:35:1321:9:341:-17.7988,0,-105.931 0/1:30:17,13:17:644:13:499:-36.2266,0,-49.259 0/1:8:6,2:6:234:2:76:-4.80643,0,-19.0229 dDocent_Contig_6357 50 . C A 99.665 . AB=0.142857;ABP=57.2971;AC=1;AF=0.125;AN=8;AO=10;CIGAR=1X;DP=189;DPB=189;DPRA=0.834951;EPP=24.725;EPPR=391.704;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.96648;PAO=0;PQA=0;PQR=0;PRO=0;QA=394;QR=7068;RO=179;RPL=10;RPP=24.725;RPPR=391.704;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=179;SRP=391.704;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:49:42,7:42:1675:7:286:-11.3643,0,-136.225 0/0:62:62,0:62:2470:0:0:0,-18.6639,-222.444 0/0:41:41,0:41:1622:0:0:0,-12.3422,-146.202 0/0:37:34,3:34:1301:3:108:0,-1.0653,-107.264 dDocent_Contig_6358 65 . T G 245.481 . AB=0.135484;ABP=360.785;AC=3;AF=0.375;AN=8;AO=43;CIGAR=1X;DP=422;DPB=422;DPRA=0;EPP=96.3836;EPPR=821.655;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.997347;PAO=0;PQA=0;PQR=0;PRO=0;QA=1362;QR=10034;RO=377;RPL=43;RPP=96.3836;RPPR=821.655;RPR=0;RUN=1;SAF=43;SAP=96.3836;SAR=0;SRF=377;SRP=821.655;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:139:122,17:122:3221:17:557:-8.59729,0,-248.271 0/0:112:110,1:110:3091:1:5:0,-32.9843,-277.907 0/1:96:81,14:81:2107:14:466:-13.5727,0,-161.196 0/1:75:64,11:64:1615:11:334:-7.77607,0,-123.008 dDocent_Contig_6359 7 . A T 3356.84 . AB=0.517391;ABP=3.61454;AC=4;AF=0.5;AN=8;AO=119;CIGAR=1X;DP=230;DPB=230;DPRA=0;EPP=261.416;EPPR=244.044;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.991597;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4568;QR=4223;RO=111;RPL=0;RPP=261.416;RPPR=244.044;RPR=119;RUN=1;SAF=119;SAP=261.416;SAR=0;SRF=111;SRP=244.044;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:82:50,32:50:1874:32:1216:-85.0484,0,-144.222 0/1:54:26,28:26:997:28:1075:-80.7989,0,-73.7869 0/1:46:15,31:15:580:31:1197:-94.1792,0,-38.6955 0/1:48:20,28:20:772:28:1080:-83.0558,0,-55.3588 dDocent_Contig_6360 24 . G C 418.512 . AB=0.142857;ABP=80.5629;AC=1;AF=0.125;AN=8;AO=12;CIGAR=1X1M;DP=237;DPB=237;DPRA=0.837209;EPP=9.52472;EPPR=452.505;GTI=0;LEN=1;MEANALT=2;MQM=52.3333;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.5;PAIREDR=0.995169;PAO=0;PQA=0;PQR=0;PRO=0;QA=467;QR=8099;RO=207;RPL=0;RPP=29.068;RPPR=452.505;RPR=12;RUN=1;SAF=9;SAP=9.52472;SAR=3;SRF=207;SRP=452.505;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:39:39,0,0:39:1522:0,0:0,0:0,-11.7402,-137.24,-11.7402,-137.24,-137.24 0|1:70:42,17,10:42:1620:17,10:682,399:-43.5502,0,-127.9,-23.481,-100.302,-153.486 0|0:90:90,0,0:90:3543:0,0:0,0:0,-27.0927,-318.946,-27.0927,-318.946,-318.946 0|0:38:36,0,2:36:1414:0,2:0,68:0,-10.8371,-127.212,-5.55093,-122.24,-121.638 dDocent_Contig_6361 107 . N T 212.852 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=7;CIGAR=1X;DP=7;DPB=7;DPRA=0;EPP=18.2106;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=226;QR=0;RO=0;RPL=0;RPP=18.2106;RPPR=0;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:4:0,4:0:0:4:124:-11.467,-1.20412,0 ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:102:-9.5168,-0.90309,0 dDocent_Contig_6363 15 . A G 2591.6 . AB=0.0269058;ABP=436.536;AC=0;AF=0;AN=8;AO=6;CIGAR=1X1M13D1M;DP=252;DPB=163.438;DPRA=0;EPP=16.0391;EPPR=311.359;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=239;QR=5564;RO=142;RPL=0;RPP=16.0391;RPPR=311.359;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=142;SRP=311.359;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:76:61,4,11:61:2419:4,11:160,400:-14.2666,-19.4396,-217.389,0,-185.942,-195.811 0|0:94:53,1,40:53:2076:1,40:39,1468:-103.995,-116.743,-287.159,0,-167.499,-158.663 0|0:53:12,1,39:12:462:1,39:40,1444:-114.484,-114.801,-152.433,0,-34.6298,-26.1858 0|0:29:16,0,13:16:607:0,13:0,469:-33.8128,-38.6292,-88.4062,0,-50.1458,-46.2324 dDocent_Contig_6364 82 . C A 143.082 . AB=0.181818;ABP=51.3749;AC=1;AF=0.125;AN=8;AO=19;CIGAR=1X;DP=179;DPB=179;DPRA=0;EPP=44.2683;EPPR=348.274;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=676;QR=5402;RO=159;RPL=19;RPP=44.2683;RPPR=348.274;RPR=0;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=159;SRP=348.274;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:51:47,3:47:1566:3:107:0,-5.42086,-131.242 0/1:55:45,10:45:1553:10:358:-16.0063,0,-123.507 0/0:55:50,5:50:1697:5:179:0,-0.0962586,-136.552 0/0:18:17,1:17:586:1:32:0,-2.21923,-49.866 dDocent_Contig_6365 25 . A G 299.52 . AB=0.181818;ABP=80.3937;AC=1;AF=0.125;AN=8;AO=18;CIGAR=1X;DP=248;DPB=248;DPRA=1.53061;EPP=42.0968;EPPR=502.449;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=715;QR=8875;RO=230;RPL=0;RPP=42.0968;RPPR=502.449;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=230;SRP=502.449;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:88:72,16:72:2760:16:639:-31.35,0,-222.049 0/0:62:60,2:60:2292:2:76:0,-11.449,-199.253 0/0:54:54,0:54:2132:0:0:0,-16.2556,-192.078 0/0:44:44,0:44:1691:0:0:0,-13.2453,-152.422 dDocent_Contig_6366 37 . T C 144.46 . AB=0.121951;ABP=155.702;AC=2;AF=0.25;AN=8;AO=15;CIGAR=1X;DP=167;DPB=167;DPRA=2.79545;EPP=35.5824;EPPR=333.074;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=600;QR=5593;RO=152;RPL=0;RPP=35.5824;RPPR=333.074;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=152;SRP=333.074;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:79:72,7:72:2664:7:278:-1.60799,0,-216.184 0/1:44:36,8:36:1353:8:322:-16.103,0,-108.809 0/0:33:33,0:33:1196:0:0:0,-9.93399,-107.935 0/0:11:11,0:11:380:0:0:0,-3.31133,-34.5273 dDocent_Contig_6367 66 . T C 366.709 . AB=0.152318;ABP=161.557;AC=1;AF=0.125;AN=8;AO=28;CIGAR=1X;DP=316;DPB=316;DPRA=1.33862;EPP=63.8115;EPPR=628.394;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1133;QR=11374;RO=288;RPL=28;RPP=63.8115;RPPR=628.394;RPR=0;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=288;SRP=628.394;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:63:63,0:63:2482:0:0:0,-18.9649,-223.533 0/1:151:128,23:128:5064:23:928:-38.3693,0,-410.193 0/0:63:61,2:61:2391:2:82:0,-11.1852,-207.574 0/0:39:36,3:36:1437:3:123:0,-0.275381,-118.118 dDocent_Contig_6368 34 . G T 517.122 . AB=0.0943396;ABP=78.766;AC=0;AF=0;AN=8;AO=5;CIGAR=2X10M;DP=209;DPB=215;DPRA=2.52381;EPP=13.8677;EPPR=363.475;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=201;QR=6446;RO=166;RPL=0;RPP=13.8677;RPPR=363.475;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=166;SRP=363.475;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:65:55,10,0:55:2149:10,0:371,0:-14.171,0,-174.053,-30.7277,-177.064,-207.418 0|0:70:52,15,0:52:2019:15,0:547,0:-29.0476,0,-161.417,-44.7012,-165.933,-210.612 0|0:53:38,9,5:38:1458:9,5:312,201:-13.8915,0,-116.956,-8.74616,-103.099,-126.939 0|0:21:21,0,0:21:820:0,0:0,0:0,-6.32163,-74.1215,-6.32163,-74.1215,-74.1215 dDocent_Contig_6371 62 . G A 5368.41 . AB=0.449649;ABP=12.4132;AC=4;AF=0.5;AN=8;AO=192;CIGAR=1X;DP=427;DPB=427;DPRA=0;EPP=419.933;EPPR=513.306;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7466;QR=9363;RO=235;RPL=192;RPP=419.933;RPPR=513.306;RPR=0;RUN=1;SAF=192;SAP=419.933;SAR=0;SRF=235;SRP=513.306;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:128:73,55:73:2897:55:2125:-152.898,0,-222.303 0/1:104:54,50:54:2151:50:1945:-143.952,0,-162.464 0/1:107:66,41:66:2634:41:1638:-115.441,0,-204.982 0/1:88:42,46:42:1681:46:1758:-131.947,0,-125.027 dDocent_Contig_6372 9 . C T 1023.95 . AB=0.283019;ABP=68.0316;AC=4;AF=0.5;AN=8;AO=45;CIGAR=1X;DP=159;DPB=159;DPRA=0;EPP=100.727;EPPR=250.558;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1736;QR=4347;RO=114;RPL=0;RPP=100.727;RPPR=250.558;RPR=45;RUN=1;SAF=45;SAP=100.727;SAR=0;SRF=114;SRP=250.558;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:50:30,20:30:1147:20:769:-54.4861,0,-88.4791 0/1:48:35,13:35:1339:13:502:-31.0792,0,-106.346 0/1:40:32,8:32:1214:8:309:-16.1318,0,-97.5105 0/1:21:17,4:17:647:4:156:-8.09566,0,-52.2431 dDocent_Contig_6373 110 . A C 1051.71 . AB=0.254464;ABP=120.309;AC=3;AF=0.375;AN=8;AO=59;CIGAR=1X;DP=301;DPB=301;DPRA=0;EPP=131.127;EPPR=526.335;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2037;QR=8186;RO=241;RPL=0;RPP=131.127;RPPR=526.335;RPR=59;RUN=1;SAF=0;SAP=131.127;SAR=59;SRF=0;SRP=526.335;SRR=241;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:71:47,24:47:1600:24:827:-53.3743,0,-122.916 0/1:106:87,19:87:2918:19:662:-27.9964,0,-230.95 0/0:77:74,2:74:2542:2:70:0,-16.3942,-222.481 0/1:47:33,14:33:1126:14:478:-29.1981,0,-87.4969 dDocent_Contig_6374 23 . G A 1221.79 . AB=0.146903;ABP=614.87;AC=2;AF=0.25;AN=8;AO=102;CIGAR=1X;DP=872;DPB=872;DPRA=0;EPP=224.5;EPPR=1670.7;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.990196;PAIREDR=0.986979;PAO=0;PQA=0;PQR=0;PRO=0;QA=4027;QR=30756;RO=768;RPL=0;RPP=224.5;RPPR=1670.7;RPR=102;RUN=1;SAF=102;SAP=224.5;SAR=0;SRF=768;SRP=1670.7;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:236:197,39:197:7880:39:1550:-68.6962,0,-637.725 0/1:329:284,44:284:11377:44:1731:-56.881,0,-923.98 0/0:216:199,17:199:7989:17:668:0,-4.57502,-658.105 0/0:91:88,2:88:3510:2:78:0,-20.0397,-308.543 dDocent_Contig_6375 107 . N C 224.401 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=8;CIGAR=1X;DP=8;DPB=8;DPRA=0;EPP=20.3821;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=10.1503;PAIRED=0.125;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=246;QR=0;RO=0;RPL=0;RPP=20.3821;RPPR=0;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:8:0,8:0:0:8:246:-22.4401,-2.40824,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_6376 7 . A G 68.0319 . AB=0.333333;ABP=5.18177;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1M1I1X;DP=39;DPB=40.5;DPRA=0.9;EPP=9.52472;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=117;QR=1392;RO=36;RPL=0;RPP=9.52472;RPPR=81.1833;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:9:6,3:6:234:3:117:-8.20111,0,-18.7218 0|0:8:8,0:8:308:0:0:0,-2.40824,-28.0821 0|0:16:16,0:16:618:0:0:0,-4.81648,-55.9601 0|0:6:6,0:6:232:0:0:0,-1.80618,-21.2489 dDocent_Contig_6377 116 . G C 1268.12 . AB=0.482143;ABP=3.32051;AC=3;AF=0.375;AN=8;AO=54;CIGAR=1X;DP=161;DPB=161;DPRA=0.761905;EPP=103.541;EPPR=210.031;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=0.962963;PAIREDR=0.971963;PAO=0;PQA=0;PQR=0;PRO=0;QA=1833;QR=3626;RO=107;RPL=0;RPP=120.27;RPPR=235.358;RPR=54;RUN=1;SAF=2;SAP=103.541;SAR=52;SRF=3;SRP=210.031;SRR=104;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:49:49,0:49:1665:0:0:0,-14.7505,-150.139 0/1:44:19,25:19:652:25:846:-63.2028,0,-45.7564 0/1:42:23,19:23:746:19:653:-46.4496,0,-54.7996 0/1:26:16,10:16:563:10:334:-22.5573,0,-43.1719 dDocent_Contig_6379 12 . T A 3455.43 . AB=0.425606;ABP=16.9032;AC=4;AF=0.5;AN=8;AO=123;CIGAR=1X;DP=289;DPB=289;DPRA=0;EPP=270.101;EPPR=363.475;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.95122;PAIREDR=0.987952;PAO=0;PQA=0;PQR=0;PRO=0;QA=4876;QR=6623;RO=166;RPL=0;RPP=270.101;RPPR=363.475;RPR=123;RUN=1;SAF=123;SAP=270.101;SAR=0;SRF=166;SRP=363.475;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:51:35,16:35:1395:16:628:-41.5022,0,-110.448 0/1:96:50,46:50:1990:46:1840:-136.909,0,-150.393 0/1:88:52,36:52:2085:36:1404:-100.129,0,-161.343 0/1:54:29,25:29:1153:25:1004:-74.4007,0,-87.7869 dDocent_Contig_6381 1 . N G 87.5346 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=31.3333;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=102;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1:0,1:0:0:1:34:-2.85458,-0.30103,0 ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:68:-5.59592,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_6382 13 . G A 77.4116 . AB=0.16129;ABP=33.9012;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=94;DPB=94;DPRA=1.54054;EPP=18.2106;EPPR=191.928;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=280;QR=3462;RO=87;RPL=0;RPP=18.2106;RPPR=191.928;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=87;SRP=191.928;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:26,5:26:1056:5:201:-9.13859,0,-85.9953 0/0:26:24,2:24:921:2:79:0,-0.329535,-75.6819 0/0:30:30,0:30:1198:0:0:0,-9.0309,-108.094 0/0:7:7,0:7:287:0:0:0,-2.10721,-26.2052 dDocent_Contig_6383 17 . A G 1399.88 . AB=0.25;ABP=135.47;AC=4;AF=0.5;AN=8;AO=61;CIGAR=1X;DP=244;DPB=244;DPRA=0;EPP=135.47;EPPR=400.39;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2439;QR=7359;RO=183;RPL=0;RPP=135.47;RPPR=400.39;RPR=61;RUN=1;SAF=61;SAP=135.47;SAR=0;SRF=183;SRP=400.39;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:82:67,15:67:2699:15:587:-28.4749,0,-218.337 0/1:104:71,33:71:2857:33:1330:-88.6465,0,-225.919 0/1:36:26,10:26:1028:10:403:-25.7924,0,-81.9769 0/1:22:19,3:19:775:3:119:-4.47184,0,-63.4456 dDocent_Contig_6384 24 . A G 53.3646 . AB=0.157895;ABP=41.6397;AC=3;AF=0.375;AN=8;AO=7;CIGAR=1X;DP=62;DPB=62;DPRA=0;EPP=18.2106;EPPR=120.27;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=261;QR=2071;RO=54;RPL=0;RPP=18.2106;RPPR=120.27;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:12,2:12:481:2:79:-3.28321,0,-39.4267 0/0:24:23,1:23:871:1:32:0,-4.02541,-75.4949 0/1:17:14,2:14:529:2:71:-1.73898,0,-43.01 0/1:7:5,2:5:190:2:79:-5.39042,0,-15.3571 dDocent_Contig_6385 211 . T C 46.4031 . AB=0.214286;ABP=12.937;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X1M1X2M9I1M1X;DP=43;DPB=46.5714;DPRA=1.44828;EPP=9.52472;EPPR=87.6977;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=114;QR=1417;RO=39;RPL=3;RPP=9.52472;RPPR=87.6977;RPR=0;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=87.6977;SRR=39;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:15:15,0:15:542:0:0:0,-4.51545,-49.1141 0|0:5:5,0:5:175:0:0:0,-1.50515,-16.0922 0|1:14:10,3:10:370:3:114:-6.33924,0,-29.3576 0|0:9:9,0:9:330:0:0:0,-2.70927,-30.05 dDocent_Contig_6386 12 . A G 2712.85 . AB=0.0755396;ABP=438.055;AC=4;AF=0.5;AN=8;AO=21;CIGAR=1X3M1X2M;DP=328;DPB=328;DPRA=0;EPP=48.6112;EPPR=254.901;GTI=0;LEN=1;MEANALT=4.66667;MQM=60;MQMR=60;NS=4;NUMALT=4;ODDS=0;PAIRED=0.761905;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=824;QR=4577;RO=116;RPL=0;RPP=48.6112;RPPR=254.901;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=116;SRP=254.901;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:81:40,6,21,13,0:40:1581:6,21,13,0:235,796,512,0:-49.5924,-42.3085,-170.613,0,-110.779,-123.779,-19.5054,-130.298,-87.9809,-145.707,-61.6336,-172.42,-130.101,-149.621,-191.742 0|1:110:41,9,32,5,19:41:1627:9,32,5,19:342,1249,198,776:-73.9801,-58.2791,-189.514,0,-105.892,-124.298,-70.0234,-175.926,-117.634,-202.462,-22.2768,-128.186,-69.8972,-139.93,-150.509 1|0:87:18,10,27,3,26:18:698:10,27,3,26:404,1058,114,1059:-107.808,-79.9175,-134.244,-30.0359,-54.0612,-79.2411,-103.879,-127.907,-78.0218,-160.312,-25.8548,-49.8833,0,-73.8458,-75.3669 0|1:50:17,5,16,0,8:17:671:5,16,0,8:198,637,0,326:-47.3026,-36.125,-89.8285,0,-38.9122,-50.3912,-52.4202,-91.3337,-55.2077,-107.629,-25.5229,-64.437,-28.31,-80.7327,-78.3245 dDocent_Contig_6387 66 . T C 9116.2 . AB=0.829132;ABP=338.919;AC=4;AF=0.5;AN=8;AO=296;CIGAR=1X;DP=357;DPB=357;DPRA=0;EPP=645.766;EPPR=135.47;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=11377;QR=1776;RO=61;RPL=296;RPP=645.766;RPPR=135.47;RPR=0;RUN=1;SAF=296;SAP=645.766;SAR=0;SRF=61;SRP=135.47;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:98:12,86:12:333:86:3351:-272.157,0,-0.738883 0/1:115:14,101:14:395:101:3895:-315.948,0,-1.20765 0/1:80:11,69:11:315:69:2620:-211.858,0,-4.54875 0/1:64:24,40:24:733:40:1511:-116.978,0,-46.9906 dDocent_Contig_6389 107 . N G 66.4848 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=70;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:70:-6.6474,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_6390 27 . A C 688.617 . AB=0.206061;ABP=126.837;AC=1;AF=0.125;AN=8;AO=34;CIGAR=1X;DP=485;DPB=485;DPRA=1.54688;EPP=76.8404;EPPR=982.344;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1333;QR=17596;RO=451;RPL=0;RPP=76.8404;RPPR=982.344;RPR=34;RUN=1;SAF=34;SAP=76.8404;SAR=0;SRF=451;SRP=982.344;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:141:141,0:141:5522:0:0:0,-42.4452,-496.844 0/1:165:131,34:131:5046:34:1333:-70.5607,0,-404.378 0/0:119:119,0:119:4637:0:0:0,-35.8226,-417.279 0/0:60:60,0:60:2391:0:0:0,-18.0618,-215.344 dDocent_Contig_6391 126 . T C 578.765 . AB=0.298969;ABP=37.0599;AC=2;AF=0.25;AN=8;AO=29;CIGAR=1X;DP=191;DPB=191;DPRA=1.03191;EPP=65.983;EPPR=354.789;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=998;QR=5456;RO=162;RPL=0;RPP=65.983;RPPR=354.789;RPR=29;RUN=1;SAF=0;SAP=65.983;SAR=29;SRF=0;SRP=354.789;SRR=162;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:68:68,0:68:2277:0:0:0,-20.47,-205.192 0/1:69:50,19:50:1688:19:656:-38.5924,0,-131.435 0/0:26:26,0:26:867:0:0:0,-7.82678,-78.337 0/1:28:18,10:18:624:10:342:-22.6821,0,-48.0568 dDocent_Contig_6392 8 . A G 2462.71 . AB=0.330033;ABP=79.0405;AC=4;AF=0.5;AN=8;AO=100;CIGAR=1X;DP=303;DPB=303;DPRA=0;EPP=220.158;EPPR=443.819;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.71;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3818;QR=7718;RO=203;RPL=0;RPP=220.158;RPPR=443.819;RPR=100;RUN=1;SAF=100;SAP=220.158;SAR=0;SRF=203;SRP=443.819;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:105:69,36:69:2653:36:1378:-92.6968,0,-207.351 0/1:112:73,39:73:2745:39:1476:-99.4031,0,-213.52 0/1:58:43,15:43:1626:15:582:-35.2633,0,-129.147 0/1:28:18,10:18:694:10:382:-26.3054,0,-54.3651 dDocent_Contig_6393 26 . A T 1180.88 . AB=0.165094;ABP=416.082;AC=4;AF=0.5;AN=8;AO=70;CIGAR=1X;DP=424;DPB=424;DPRA=0;EPP=155.013;EPPR=771.712;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=2.77556e-17;PAIRED=0.985714;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2798;QR=14163;RO=354;RPL=0;RPP=155.013;RPPR=771.712;RPR=70;RUN=1;SAF=70;SAP=155.013;SAR=0;SRF=354;SRP=771.712;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:140:114,26:114:4564:26:1043:-52.0155,0,-368.538 0/1:152:128,24:128:5123:24:952:-40.2205,0,-415.182 0/1:81:71,10:71:2831:10:396:-11.6114,0,-230.517 0/1:51:41,10:41:1645:10:407:-21.6381,0,-132.927 dDocent_Contig_6394 50 . G A 874.827 . AB=0.2;ABP=30.3709;AC=1;AF=0.125;AN=8;AO=7;CIGAR=10M1I2M1X3M;DP=103;DPB=102;DPRA=0;EPP=18.2106;EPPR=126.784;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=278;QR=2199;RO=57;RPL=0;RPP=18.2106;RPPR=126.784;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:23:12,0,11,0:12:471:0,11,0:0,440,0:-33.0312,-36.6436,-75.3764,0,-39.1288,-35.8175,-36.6436,-75.3764,-39.1288,-75.3764 0|1:35:17,7,5,5:17:662:7,5,5:278,177,189:-17.7909,0,-52.3259,-8.50453,-40.0294,-61.4163,-7.41147,-38.9404,-47.4306,-60.3285 0|0:33:22,0,10,0:22:844:0,10,0:0,402,0:-26.6979,-33.3206,-102.593,0,-69.4571,-66.4468,-33.3206,-102.593,-69.4571,-102.593 0|0:12:6,0,6,0:6:222:0,6,0:0,229,0:-17.3606,-19.1668,-37.3188,0,-18.5275,-16.7214,-19.1668,-37.3188,-18.5275,-37.3188 dDocent_Contig_6395 107 . N G 55.1043 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=58;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:58:-5.50935,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_6396 70 . C T 33.5884 . AB=0.119048;ABP=55.9529;AC=2;AF=0.25;AN=8;AO=5;CIGAR=1X;DP=142;DPB=142;DPRA=0.42;EPP=13.8677;EPPR=300.502;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=197;QR=5407;RO=137;RPL=5;RPP=13.8677;RPPR=300.502;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=137;SRP=300.502;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:75:75,0:75:2955:0:0:0,-22.5772,-266.053 0/0:25:25,0:25:989:0:0:0,-7.52575,-89.3017 0/1:21:18,3:18:711:3:122:-5.05086,0,-57.9899 0/1:21:19,2:19:752:2:75:-0.797174,0,-61.6781 dDocent_Contig_6398 9 . C T 1416.59 . AB=0.287736;ABP=85.9769;AC=4;AF=0.5;AN=8;AO=61;CIGAR=1X;DP=212;DPB=212;DPRA=0;EPP=135.47;EPPR=328.731;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2330;QR=5787;RO=150;RPL=0;RPP=135.47;RPPR=328.731;RPR=61;RUN=1;SAF=61;SAP=135.47;SAR=0;SRF=150;SRP=328.731;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:56:31,24:31:1206:24:921:-66.2611,0,-91.8885 0/1:82:61,21:61:2366:21:797:-47.367,0,-188.461 0/1:62:47,15:47:1801:15:575:-33.4278,0,-143.679 0/1:12:11,1:11:414:1:37:-0.0854694,0,-33.9944 dDocent_Contig_6399 98 . N C 2491.53 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=85;CIGAR=1X;DP=85;DPB=85;DPRA=0;EPP=187.585;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=2748;QR=0;RO=0;RPL=85;RPP=187.585;RPPR=0;RPR=0;RUN=1;SAF=85;SAP=187.585;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:44:0,44:0:0:44:1439:-129.798,-13.2453,0 1/1:16:0,16:0:0:16:499:-45.2094,-4.81648,0 1/1:21:0,21:0:0:21:671:-60.6913,-6.32163,0 1/1:4:0,4:0:0:4:139:-12.8527,-1.20412,0 dDocent_Contig_6400 9 . C T 2159.54 . AB=0.282675;ABP=137.978;AC=4;AF=0.5;AN=8;AO=93;CIGAR=1X;DP=329;DPB=329;DPRA=0;EPP=204.957;EPPR=515.478;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3568;QR=9036;RO=236;RPL=0;RPP=204.957;RPPR=515.478;RPR=93;RUN=1;SAF=93;SAP=204.957;SAR=0;SRF=236;SRP=515.478;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:110:88,22:88:3348:22:845:-43.2589,0,-268.345 0/1:100:70,30:70:2686:30:1157:-74.3255,0,-211.824 0/1:74:53,21:53:2037:21:798:-49.8662,0,-161.289 0/1:45:25,20:25:965:20:768:-55.9016,0,-73.6173 dDocent_Contig_6401 13 . G A 306.371 . AB=0.150327;ABP=165.502;AC=3;AF=0.375;AN=8;AO=23;CIGAR=1X;DP=164;DPB=164;DPRA=4.63636;EPP=52.9542;EPPR=309.188;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=900;QR=5611;RO=141;RPL=0;RPP=52.9542;RPPR=309.188;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=141;SRP=309.188;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:71:62,9:62:2470:9:348:-10.302,0,-201.077 0/1:59:50,9:50:1988:9:356:-14.6418,0,-161.365 0/1:23:18,5:18:716:5:196:-11.0912,0,-57.8459 0/0:11:11,0:11:437:0:0:0,-3.31133,-39.6858 dDocent_Contig_6402 92 . A G 2488.85 . AB=0.572222;ABP=11.1654;AC=4;AF=0.5;AN=8;AO=103;CIGAR=1X;DP=180;DPB=180;DPRA=0;EPP=226.672;EPPR=170.214;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3436;QR=2555;RO=77;RPL=103;RPP=226.672;RPPR=170.214;RPR=0;RUN=1;SAF=103;SAP=226.672;SAR=0;SRF=77;SRP=170.214;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:72:22,50:22:735:50:1651:-127.196,0,-44.7882 0/1:38:19,19:19:624:19:647:-47.111,0,-45.0306 0/1:53:24,29:24:809:29:974:-72.0106,0,-57.166 0/1:17:12,5:12:387:5:164:-9.96535,0,-30.0235 dDocent_Contig_6403 53 . T G 3727.83 . AB=0.619289;ABP=27.3594;AC=4;AF=0.5;AN=8;AO=122;CIGAR=1X;DP=197;DPB=197;DPRA=0;EPP=267.93;EPPR=165.871;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=0.946667;PAO=0;PQA=0;PQR=0;PRO=0;QA=4871;QR=2933;RO=75;RPL=122;RPP=267.93;RPPR=165.871;RPR=0;RUN=1;SAF=122;SAP=267.93;SAR=0;SRF=75;SRP=165.871;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:76:32,44:32:1248:44:1750:-134.841,0,-89.7118 0/1:56:25,31:25:987:31:1239:-94.9268,0,-72.2668 0/1:39:11,28:11:441:28:1128:-90.0629,0,-28.3026 0/1:26:7,19:7:257:19:754:-60.3504,0,-15.654 dDocent_Contig_6406 1 . N G 176.851 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=5;CIGAR=1X;DP=5;DPB=5;DPRA=0;EPP=13.8677;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=185;QR=0;RO=0;RPL=0;RPP=13.8677;RPPR=0;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:104:-9.69748,-0.90309,0 1/1:2:0,2:0:0:2:81:-7.68573,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_6407 11 . G A 2702.41 . AB=0.238806;ABP=320.629;AC=4;AF=0.5;AN=8;AO=128;CIGAR=1X;DP=536;DPB=536;DPRA=0;EPP=280.959;EPPR=871.684;GTI=0;LEN=1;MEANALT=1;MQM=59.9844;MQMR=59.8676;NS=4;NUMALT=1;ODDS=2.77556e-17;PAIRED=0;PAIREDR=0.183824;PAO=0;PQA=0;PQR=0;PRO=0;QA=4865;QR=16258;RO=408;RPL=0;RPP=280.959;RPPR=888.971;RPR=128;RUN=1;SAF=128;SAP=280.959;SAR=0;SRF=406;SRP=871.684;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:181:116,65:116:4605:65:2461:-167.193,0,-359.885 0/1:147:127,20:127:5077:20:765:-24.9223,0,-412.46 0/1:133:106,27:106:4223:27:1036:-53.5017,0,-339.946 0/1:75:59,16:59:2353:16:603:-32.0213,0,-189.34 dDocent_Contig_6408 48 . T C 5710.31 . AB=0.454343;ABP=11.14;AC=4;AF=0.5;AN=8;AO=204;CIGAR=1X;DP=449;DPB=449;DPRA=0;EPP=445.991;EPPR=526.371;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=2.77556e-17;PAIRED=1;PAIREDR=0.995918;PAO=0;PQA=0;PQR=0;PRO=0;QA=7920;QR=9712;RO=245;RPL=0;RPP=445.991;RPPR=526.371;RPR=204;RUN=1;SAF=204;SAP=445.991;SAR=0;SRF=245;SRP=535.021;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:109:71,38:71:2809:38:1490:-101.531,0,-220.107 0/1:170:101,69:101:4004:69:2676:-189.796,0,-309.171 0/1:107:47,60:47:1858:60:2275:-172.71,0,-135.221 0/1:63:26,37:26:1041:37:1479:-114.392,0,-75.0163 dDocent_Contig_6409 12 . G A 203.363 . AB=0.141509;ABP=121.335;AC=2;AF=0.25;AN=8;AO=17;CIGAR=1X;DP=193;DPB=193;DPRA=1.23577;EPP=39.9253;EPPR=351.236;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.823529;PAIREDR=0.931818;PAO=0;PQA=0;PQR=0;PRO=0;QA=691;QR=7020;RO=176;RPL=0;RPP=39.9253;RPPR=385.189;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=172;SRP=351.236;SRR=4;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:51:42,9:42:1689:9:367:-18.0427,0,-136.877 0/1:55:49,6:49:1974:6:243:-5.69153,0,-161.293 0/0:41:41,0:41:1628:0:0:0,-12.3422,-146.753 0/0:46:44,2:44:1729:2:81:0,-6.16165,-148.146 dDocent_Contig_6410 91 . T C 53.0114 . AB=0.121951;ABP=104.805;AC=1;AF=0.125;AN=8;AO=10;CIGAR=1X;DP=196;DPB=196;DPRA=2.15789;EPP=24.725;EPPR=406.904;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.994624;PAO=0;PQA=0;PQR=0;PRO=0;QA=345;QR=6316;RO=186;RPL=10;RPP=24.725;RPPR=406.904;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=186;SRP=406.904;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:82:72,10:72:2452:10:345:-6.69907,0,-196.258 0/0:48:48,0:48:1643:0:0:0,-14.4494,-148.16 0/0:46:46,0:46:1570:0:0:0,-13.8474,-141.591 0/0:20:20,0:20:651:0:0:0,-6.0206,-58.8956 dDocent_Contig_6411 42 . G A 3541.02 . AB=0.220315;ABP=477.941;AC=4;AF=0.5;AN=8;AO=154;CIGAR=1X3M;DP=699;DPB=699;DPRA=0;EPP=337.417;EPPR=969.982;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=1.11022e-16;PAIRED=1;PAIREDR=0.997868;PAO=0;PQA=0;PQR=0;PRO=0;QA=6107;QR=18371;RO=469;RPL=0;RPP=337.417;RPPR=969.982;RPR=154;RUN=1;SAF=154;SAP=337.417;SAR=0;SRF=469;SRP=1021.43;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:299:199,39,61:199:7850:39,61:1507,2454:-142.344,-78.4974,-712.604,0,-522.103,-627.497 0|1:192:142,11,39:142:5511:11,39:421,1540:-83.9672,-92.1715,-541.611,0,-418.217,-441.021 0|1:133:97,10,25:97:3796:10,25:399,993:-52.5478,-48.8862,-357.973,0,-279.234,-304.569 0|1:75:31,14,29:31:1214:14,29:528,1120:-82.6411,-48.7137,-144.32,0,-56.5691,-91.097 dDocent_Contig_6412 121 . C T 339.57 . AB=0.441176;ABP=4.03217;AC=1;AF=0.125;AN=8;AO=15;CIGAR=1X;DP=89;DPB=89;DPRA=1.85455;EPP=35.5824;EPPR=163.699;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=503;QR=2537;RO=74;RPL=0;RPP=35.5824;RPPR=163.699;RPR=15;RUN=1;SAF=0;SAP=35.5824;SAR=15;SRF=0;SRP=163.699;SRR=74;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:34:19,15:19:665:15:503:-35.355,0,-49.9406 0/0:23:23,0:23:793:0:0:0,-6.92369,-71.6888 0/0:22:22,0:22:746:0:0:0,-6.62266,-67.4569 0/0:10:10,0:10:333:0:0:0,-3.0103,-30.2915 dDocent_Contig_6413 7 . A G 88.7403 . AB=0.230769;ABP=27.5646;AC=1;AF=0.125;AN=8;AO=12;CIGAR=1X;DP=132;DPB=132;DPRA=1.66667;EPP=29.068;EPPR=263.587;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=341;QR=4522;RO=120;RPL=0;RPP=29.068;RPPR=263.587;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=120;SRP=263.587;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:22:22,0:22:837:0:0:0,-6.62266,-75.6522 0/0:39:38,1:38:1435:1:25:0,-9.24031,-126.931 0/1:39:30,9:30:1138:9:245:-10.573,0,-90.9816 0/0:32:30,2:30:1112:2:71:0,-2.89188,-93.6356 dDocent_Contig_6414 7 . A T 114.74 . AB=0.105263;ABP=234.444;AC=1;AF=0.125;AN=8;AO=21;CIGAR=1X1M1X2M1X;DP=722;DPB=722;DPRA=0.791563;EPP=48.6112;EPPR=1423.15;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=799;QR=24933;RO=654;RPL=0;RPP=48.6112;RPPR=1423.15;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=654;SRP=1423.15;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:171:146,18,5:146:5577:18,5:692,197:-12.8719,0,-452.176,-40.6115,-441.387,-496.692 0|0:212:196,0,13:196:7522:0,13:0,524:0,-59.0019,-676.416,-15.7552,-633.225,-629.311 0|0:191:174,0,11:174:6598:0,11:0,446:0,-52.3792,-593.352,-15.5614,-556.571,-553.26 0|0:148:138,3,5:138:5236:3,5:107,194:0,-32.8228,-461.264,-25.5785,-446.229,-453.445 dDocent_Contig_6415 80 . C T 151.038 . AB=0.285714;ABP=30.9292;AC=2;AF=0.25;AN=8;AO=22;CIGAR=1X;DP=116;DPB=116;DPRA=2.08333;EPP=50.7827;EPPR=207.129;GTI=0;LEN=1;MEANALT=1;MQM=21;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=830;QR=3172;RO=94;RPL=22;RPP=50.7827;RPPR=207.129;RPR=0;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=94;SRP=207.129;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:64:45,19:45:1506:19:716:-16.4997,0,-116.555 0/0:16:16,0:16:552:0:0:0,-4.81648,-50.0051 0/1:6:5,1:5:167:1:39:-0.287045,0,-13.5522 0/0:30:28,2:28:947:2:75:0,-5.06008,-81.566 dDocent_Contig_6416 42 . G A 31.7377 . AB=0.137931;ABP=36.0317;AC=2;AF=0.25;AN=8;AO=4;CIGAR=1X;DP=47;DPB=47;DPRA=1.61111;EPP=11.6962;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=161;QR=1657;RO=43;RPL=0;RPP=11.6962;RPPR=96.3836;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:15,2:15:569:2:82:-2.66217,0,-46.4238 0/0:7:7,0:7:276:0:0:0,-2.10721,-25.2084 0/0:11:11,0:11:436:0:0:0,-3.31133,-39.5949 0/1:12:10,2:10:376:2:79:-3.88488,0,-30.5736 dDocent_Contig_6417 15 . T G 949.751 . AB=0.244048;ABP=98.6068;AC=2;AF=0.25;AN=8;AO=43;CIGAR=1X;DP=312;DPB=312;DPRA=0.822222;EPP=96.3836;EPPR=584.965;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1721;QR=10717;RO=268;RPL=0;RPP=96.3836;RPPR=584.965;RPR=43;RUN=1;SAF=43;SAP=96.3836;SAR=0;SRF=268;SRP=584.965;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:90:90,0:90:3623:0:0:0,-27.0927,-326.082 0/1:123:95,28:95:3785:28:1125:-64.5029,0,-303.632 0/0:54:51,2:51:2026:2:73:0,-9.21363,-175.683 0/1:45:32,13:32:1283:13:523:-33.8702,0,-102.19 dDocent_Contig_6418 41 . G C 616.848 . AB=0.245455;ABP=64.917;AC=3;AF=0.375;AN=8;AO=28;CIGAR=1X;DP=129;DPB=129;DPRA=0;EPP=63.8115;EPPR=222.329;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1126;QR=3950;RO=101;RPL=0;RPP=63.8115;RPPR=222.329;RPR=28;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=101;SRP=222.329;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:38:21,17:21:833:17:681:-50.1799,0,-63.8441 0/1:48:40,8:40:1559:8:322:-14.8989,0,-126.091 0/1:24:22,2:22:854:2:82:-0.554958,0,-69.9361 0/0:19:18,1:18:704:1:41:0,-1.625,-59.5851 dDocent_Contig_6419 31 . C T 6937.93 . AB=0.0669546;ABP=757.168;AC=0;AF=0;AN=8;AO=31;CIGAR=1X2M1X;DP=463;DPB=463;DPRA=0;EPP=70.3259;EPPR=428.619;GTI=0;LEN=1;MEANALT=2.25;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.989796;PAO=0;PQA=0;PQR=0;PRO=0;QA=1192;QR=7692;RO=196;RPL=0;RPP=70.3259;RPPR=428.619;RPR=31;RUN=1;SAF=31;SAP=70.3259;SAR=0;SRF=196;SRP=428.619;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:104:37,15,52:37:1455:15,52:598,2091:-161.181,-123.073,-238.232,0,-70.4258,-104.021 0|0:104:46,2,53:46:1819:2,53:77,2091:-158.172,-165.698,-314.789,0,-143.369,-133.736 0|0:132:47,3,82:47:1835:3,82:117,3240:-252.448,-256.979,-406.909,0,-141.218,-126.151 0|0:123:66,11,46:66:2583:11,46:400,1814:-129.39,-116.611,-325.667,0,-179.743,-198.545 dDocent_Contig_6420 38 . G C 15763.5 . AB=0.809446;ABP=513.695;AC=4;AF=0.5;AN=8;AO=497;CIGAR=1X;DP=614;DPB=614;DPRA=0;EPP=1082.23;EPPR=257.073;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.995976;PAIREDR=0.982906;PAO=0;PQA=0;PQR=0;PRO=0;QA=19655;QR=4706;RO=117;RPL=0;RPP=1082.23;RPPR=257.073;RPR=497;RUN=1;SAF=497;SAP=1082.23;SAR=0;SRF=117;SRP=257.073;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:207:53,154:53:2130:154:6137:-489.779,0,-129.559 0/1:140:19,121:19:757:121:4737:-384.118,0,-26.3066 0/1:139:25,114:25:1019:114:4509:-363.923,0,-50.1577 0/1:128:20,108:20:800:108:4272:-345.928,0,-33.7866 dDocent_Contig_6422 26 . C T 223.994 . AB=0.144144;ABP=125.102;AC=1;AF=0.125;AN=8;AO=18;CIGAR=1X;DP=370;DPB=370;DPRA=0.689498;EPP=42.0968;EPPR=767.369;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=714;QR=14002;RO=352;RPL=0;RPP=42.0968;RPPR=767.369;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=352;SRP=767.369;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:111:95,16:95:3797:16:632:-23.7973,0,-308.315 0/0:154:154,0:154:6115:0:0:0,-46.3586,-550.112 0/0:65:65,0:65:2603:0:0:0,-19.5669,-234.397 0/0:40:38,2:38:1487:2:82:0,-4.26152,-126.286 dDocent_Contig_6423 47 . T A 481.061 . 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A G 177.204 . AB=0.391304;ABP=5.3706;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X;DP=153;DPB=153;DPRA=0.530769;EPP=22.5536;EPPR=315.702;GTI=0;LEN=1;MEANALT=1;MQM=33;MQMR=58.0833;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.888889;PAO=0;PQA=0;PQR=0;PRO=0;QA=359;QR=5562;RO=144;RPL=0;RPP=22.5536;RPPR=315.702;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=144;SRP=315.702;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:61:61,0:61:2323:0:0:0,-18.3628,-207.144 0/1:23:14,9:14:563:9:359:-19.4194,0,-43.3279 0/0:47:47,0:47:1843:0:0:0,-14.1484,-165.893 0/0:22:22,0:22:833:0:0:0,-6.62266,-74.5498 dDocent_Contig_6425 44 . G A 343.129 . AB=0.111111;ABP=464.086;AC=2;AF=0.25;AN=8;AO=43;CIGAR=1X;DP=643;DPB=643;DPRA=0;EPP=96.3836;EPPR=1305.89;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1750;QR=23906;RO=600;RPL=0;RPP=96.3836;RPPR=1305.89;RPR=43;RUN=1;SAF=43;SAP=96.3836;SAR=0;SRF=600;SRP=1305.89;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:224:203,21:203:7998:21:854:-9.73809,0,-651.964 0/0:211:210,1:210:8405:1:41:0,-59.4228,-751.879 0/1:127:109,18:109:4393:18:732:-27.9728,0,-357.073 0/0:81:78,3:78:3110:3:123:0,-12.9186,-268.505 dDocent_Contig_6426 75 . T A 2260.52 . AB=0.53012;ABP=4.31842;AC=4;AF=0.5;AN=8;AO=88;CIGAR=1X;DP=166;DPB=166;DPRA=0;EPP=194.1;EPPR=172.385;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3135;QR=2783;RO=78;RPL=88;RPP=194.1;RPPR=172.385;RPR=0;RUN=1;SAF=88;SAP=194.1;SAR=0;SRF=78;SRP=172.385;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:54:27,27:27:927:27:967:-71.0842,0,-67.4785 0/1:43:18,25:18:655:25:903:-68.645,0,-46.3374 0/1:45:22,23:22:796:23:817:-60.3022,0,-58.4169 0/1:24:11,13:11:405:13:448:-33.4186,0,-29.5725 dDocent_Contig_6427 1 . N G 73.1023 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=77;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:77:-7.30914,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_6428 1 . N G 106.316 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=114;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:114:-10.6311,-0.90309,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_6429 14 . T A 173.169 . AB=0.134615;ABP=123.611;AC=1;AF=0.125;AN=8;AO=15;CIGAR=1X3M1X3M2X;DP=282;DPB=282;DPRA=1.63551;EPP=35.5824;EPPR=571.936;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=591;QR=10223;RO=262;RPL=0;RPP=35.5824;RPPR=571.936;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=262;SRP=571.936;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:89:87,0:87:3378:0:0:0,-26.1896,-303.874 0|1:104:88,14:88:3451:14:551:-19.0158,0,-279.787 0|0:71:69,1:69:2686:1:40:0,-17.4809,-237.898 0|0:18:18,0:18:708:0:0:0,-5.41854,-64.0508 dDocent_Contig_6430 11 . G A 1017.97 . AB=0.168091;ABP=338.871;AC=3;AF=0.375;AN=8;AO=60;CIGAR=1X1M;DP=441;DPB=441;DPRA=0;EPP=133.299;EPPR=815.141;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2381;QR=14743;RO=374;RPL=0;RPP=133.299;RPPR=815.141;RPR=60;RUN=1;SAF=60;SAP=133.299;SAR=0;SRF=374;SRP=815.141;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:124:109,0,15:109:4302:0,15:0,590:-16.1104,-48.9227,-402.854,0,-354.325,-349.809 0|0:90:89,0,1:89:3501:0,1:0,41:0,-26.7917,-314.739,-22.9981,-311.355,-311.054 0|1:146:114,2,30:114:4499:2,30:81,1195:-64.075,-91.7129,-461.265,0,-363.468,-361.116 0|1:81:62,5,14:62:2441:5,14:204,555:-27.0097,-28.8392,-228.119,0,-183.942,-196.56 dDocent_Contig_6431 22 . G A 94.0223 . AB=0.126582;ABP=98.6925;AC=2;AF=0.25;AN=8;AO=15;CIGAR=1X;DP=204;DPB=204;DPRA=0.729167;EPP=35.5824;EPPR=413.419;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.957672;PAO=0;PQA=0;PQR=0;PRO=0;QA=595;QR=7387;RO=189;RPL=0;RPP=35.5824;RPPR=413.419;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=189;SRP=413.419;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:61:56,5:56:2171:5:197:0,-0.258037,-177.476 0/1:54:47,7:47:1867:7:277:-9.04322,0,-151.987 0/0:64:64,0:64:2494:0:0:0,-19.2659,-224.605 0/1:25:22,3:22:855:3:121:-3.75445,0,-69.7267 dDocent_Contig_6433 29 . T C 54.41 . AB=0.153846;ABP=30.0702;AC=1;AF=0.125;AN=8;AO=5;CIGAR=2X;DP=148;DPB=148;DPRA=0.494949;EPP=13.8677;EPPR=313.531;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=199;QR=5713;RO=143;RPL=0;RPP=13.8677;RPPR=313.531;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=143;SRP=313.531;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:58:58,0:58:2326:0:0:0,-17.4597,-209.491 0|0:41:41,0:41:1633:0:0:0,-12.3422,-147.198 0|0:23:22,1:22:884:1:37:0,-3.22586,-76.166 0|1:26:22,4:22:870:4:162:-7.13997,0,-70.7822 dDocent_Contig_6434 18 . C T 40.6112 . AB=0.104651;ABP=119.765;AC=2;AF=0.25;AN=8;AO=13;CIGAR=1X;DP=175;DPB=175;DPRA=0;EPP=31.2394;EPPR=337.632;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=0.938272;PAO=0;PQA=0;PQR=0;PRO=0;QA=526;QR=6345;RO=162;RPL=0;RPP=31.2394;RPPR=354.789;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=160;SRP=337.632;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:37:36,1:36:1429:1:41:0,-7.04354,-124.77 0/0:52:49,3:49:1920:3:123:0,-4.18877,-161.531 0/1:51:46,5:46:1814:5:205:-3.48248,0,-148.123 0/1:35:31,4:31:1182:4:157:-3.97184,0,-96.1144 dDocent_Contig_6436 141 . G T 353.14 . AB=0.213483;ABP=66.471;AC=2;AF=0.25;AN=8;AO=19;CIGAR=1X;DP=137;DPB=137;DPRA=1.85417;EPP=44.2683;EPPR=259.244;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=720;QR=4601;RO=118;RPL=0;RPP=44.2683;RPPR=259.244;RPR=19;RUN=1;SAF=0;SAP=44.2683;SAR=19;SRF=0;SRP=259.244;SRR=118;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:39:39,0:39:1519:0:0:0,-11.7402,-136.955 0/1:47:39,8:39:1526:8:312:-14.2931,0,-123.439 0/1:42:31,11:31:1197:11:408:-24.4188,0,-95.3606 0/0:9:9,0:9:359:0:0:0,-2.70927,-32.6722 dDocent_Contig_6437 203 . T C 15430.6 . AB=0.881579;ABP=99.1265;AC=7;AF=0.875;AN=8;AO=464;CIGAR=1X;DP=480;DPB=480;DPRA=0;EPP=1010.57;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=17685;QR=590;RO=16;RPL=464;RPP=1010.57;RPPR=37.7539;RPR=0;RUN=1;SAF=0;SAP=1010.57;SAR=464;SRF=0;SRP=37.7539;SRR=16;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:171:0,171:0:0:171:6522:-586.893,-51.4761,0 1/1:137:0,137:0:0:137:5186:-466.749,-41.2411,0 1/1:96:7,89:7:269:89:3413:-282.734,-4.32469,0 0/1:76:9,67:9:321:67:2564:-208.079,0,-6.34754 dDocent_Contig_6438 19 . T C 12249.1 . AB=0.461032;ABP=15.0261;AC=4;AF=0.5;AN=8;AO=420;CIGAR=1X2M1X2M;DP=911;DPB=910.833;DPRA=0;EPP=915.029;EPPR=964.973;GTI=0;LEN=1;MEANALT=4.25;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=5.55112e-17;PAIRED=1;PAIREDR=0.997743;PAO=0;PQA=0;PQR=0;PRO=0;QA=16596;QR=17266;RO=443;RPL=0;RPP=915.029;RPPR=964.973;RPR=420;RUN=1;SAF=420;SAP=915.029;SAR=0;SRF=443;SRP=964.973;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:339:175,0,163:175:6868:0,163:0,6501:-482.734,-535.414,-1100.23,0,-564.863,-515.796 0|1:270:109,17,137:109:4230:17,137:674,5365:-408.303,-385.635,-728.041,0,-292.051,-306.29 0|1:212:121,16,74:121:4711:16,74:632,2905:-202.49,-186.909,-569.251,0,-335.163,-364.893 0|1:90:38,5,46:38:1457:5,46:200,1825:-138.784,-133.748,-251.806,0,-103.079,-105.709 dDocent_Contig_6439 25 . G A 447.43 . AB=0.123867;ABP=409.758;AC=2;AF=0.25;AN=8;AO=68;CIGAR=1X;DP=1143;DPB=1143;DPRA=0;EPP=150.67;EPPR=2320;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.946;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.993488;PAO=0;PQA=0;PQR=0;PRO=0;QA=2692;QR=42710;RO=1075;RPL=0;RPP=150.67;RPPR=2337.34;RPR=68;RUN=1;SAF=68;SAP=150.67;SAR=0;SRF=1073;SRP=2320;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:341:340,1:340:13447:1:27:0,-99.9514,-1206.55 0/0:471:445,26:445:17770:26:1030:0,-48.7927,-1504.83 0/1:184:167,17:167:6659:17:675:-5.6928,0,-543.63 0/1:147:123,24:123:4834:24:960:-42.4481,0,-388.927 dDocent_Contig_6442 8 . A T 110.47 . AB=0.127907;ABP=106.433;AC=1;AF=0.125;AN=8;AO=11;CIGAR=1X;DP=320;DPB=320;DPRA=1.10256;EPP=26.8965;EPPR=673.995;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=422;QR=11796;RO=309;RPL=0;RPP=26.8965;RPPR=673.995;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=309;SRP=673.995;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:86:75,11:75:2861:11:422:-12.4449,0,-231.781 0/0:94:94,0:94:3593:0:0:0,-28.2968,-323.493 0/0:77:77,0:77:2940:0:0:0,-23.1793,-264.772 0/0:63:63,0:63:2402:0:0:0,-18.9649,-216.391 dDocent_Contig_6443 38 . C A 81.0514 . AB=0.166667;ABP=31.9633;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=112;DPB=112;DPRA=1.09756;EPP=13.8677;EPPR=233.186;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=205;QR=4286;RO=106;RPL=0;RPP=13.8677;RPPR=233.186;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=106;SRP=233.186;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:28:28,0:28:1138:0:0:0,-8.42884,-102.699 0/1:30:25,5:25:1001:5:205:-9.80411,0,-81.356 0/0:40:39,0:39:1577:0:0:0,-11.7402,-142.065 0/0:14:14,0:14:570:0:0:0,-4.21442,-51.6422 dDocent_Contig_6444 10 . C A 2521.65 . AB=0.297297;ABP=121.854;AC=3;AF=0.375;AN=8;AO=101;CIGAR=1X;DP=363;DPB=363;DPRA=0;EPP=222.329;EPPR=563.25;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.920792;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4039;QR=10203;RO=258;RPL=0;RPP=222.329;RPPR=563.25;RPR=101;RUN=1;SAF=101;SAP=222.329;SAR=0;SRF=258;SRP=563.25;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:155:95,60:95:3771:60:2415:-170.836,0,-292.746 0/1:120:93,23:93:3663:23:900:-45.9833,0,-294.382 0/1:58:42,16:42:1652:16:643:-40.7433,0,-131.45 0/0:30:28,2:28:1117:2:81:0,-1.34517,-93.1287 dDocent_Contig_6445 55 . A G 60.3621 . AB=0.235294;ABP=13.3567;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=149;DPB=149;DPRA=0.386364;EPP=11.6962;EPPR=317.874;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.993103;PAO=0;PQA=0;PQR=0;PRO=0;QA=139;QR=4963;RO=145;RPL=4;RPP=11.6962;RPPR=317.874;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=145;SRP=317.874;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:89:89,0:89:3022:0:0:0,-26.7917,-272.223 0/1:17:13,4:13:453:4:139:-7.73518,0,-35.9853 0/0:27:27,0:27:941:0:0:0,-8.12781,-85.0059 0/0:16:16,0:16:547:0:0:0,-4.81648,-49.5539 dDocent_Contig_6446 15 . T C 4061.51 . AB=0.450794;ABP=9.63501;AC=4;AF=0.5;AN=8;AO=142;CIGAR=3X;DP=315;DPB=315;DPRA=0;EPP=311.359;EPPR=352.617;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.908451;PAIREDR=0.993789;PAO=0;PQA=0;PQR=0;PRO=0;QA=5606;QR=6370;RO=161;RPL=0;RPP=311.359;RPPR=352.617;RPR=142;RUN=1;SAF=142;SAP=311.359;SAR=0;SRF=161;SRP=352.617;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:116:50,62:50:1993:62:2467:-188.139,0,-145.521 0|1:65:35,26:35:1406:26:988:-70.5631,0,-108.145 0|1:85:51,30:51:2002:30:1190:-82.8048,0,-155.819 0|1:49:25,24:25:969:24:961:-72.0425,0,-72.7589 dDocent_Contig_6447 29 . C G 92.3826 . AB=0.166667;ABP=43.5445;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=252;DPB=252;DPRA=0.6;EPP=18.2106;EPPR=532.85;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=259;QR=9611;RO=244;RPL=0;RPP=18.2106;RPPR=532.85;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=244;SRP=532.85;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:79:79,0:79:3156:0:0:0,-23.7814,-284.104 0/0:76:76,0:76:2941:0:0:0,-22.8783,-264.793 0/0:55:55,0:55:2152:0:0:0,-16.5566,-193.849 0/1:42:34,7:34:1362:7:259:-10.9372,0,-110.115 dDocent_Contig_6448 23 . A G 627.352 . AB=0.0298507;ABP=131.646;AC=0;AF=0;AN=8;AO=4;CIGAR=5M1X1M;DP=254;DPB=250.429;DPRA=0.671053;EPP=3.0103;EPPR=430.519;GTI=0;LEN=1;MEANALT=2;MQM=18;MQMR=53.1518;NS=4;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0.46875;PAO=0;PQA=0;PQR=0;PRO=0;QA=72;QR=8678;RO=224;RPL=0;RPP=11.6962;RPPR=489.42;RPR=4;RUN=1;SAF=2;SAP=3.0103;SAR=2;SRF=217;SRP=430.519;SRR=7;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:89:89,0,0:89:3463:0,0:0,0:0,-26.7917,-301.775,-26.7917,-301.775,-301.775 0|0:67:40,25,2:40:1503:25,2:932,37:-64.4342,0,-101.645,-74.2998,-106.988,-182.674 0|0:63:63,0,0:63:2471:0,0:0,0:0,-18.9649,-212.06,-18.9649,-212.06,-212.06 0|0:35:32,0,2:32:1241:0,2:0,35:0,-9.63296,-107.176,-7.78937,-105.176,-104.574 dDocent_Contig_6449 125 . G T 31.437 . AB=0.166667;ABP=20.3821;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=67;DPB=67;DPRA=1.10204;EPP=9.52472;EPPR=46.9826;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.78125;PAO=0;PQA=0;PQR=0;PRO=0;QA=110;QR=2489;RO=64;RPL=0;RPP=9.52472;RPPR=141.985;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=14;SRP=46.9826;SRR=50;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:24:24,0:24:940:0:0:0,-7.22472,-84.9085 0/1:18:15,3:15:581:3:110:-4.84236,0,-47.2137 0/0:17:17,0:17:657:0:0:0,-5.11751,-59.4644 0/0:8:8,0:8:311:0:0:0,-2.40824,-28.3543 dDocent_Contig_6450 10 . C T 140.132 . AB=0.259259;ABP=16.6021;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=148;DPB=148;DPRA=0.669421;EPP=18.2106;EPPR=309.188;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.992908;PAO=0;PQA=0;PQR=0;PRO=0;QA=261;QR=5655;RO=141;RPL=0;RPP=18.2106;RPPR=309.188;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=141;SRP=309.188;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:52:52,0:52:2080:0:0:0,-15.6536,-187.375 0/0:54:54,0:54:2180:0:0:0,-16.2556,-196.365 0/1:27:20,7:20:792:7:261:-15.7121,0,-63.4724 0/0:15:15,0:15:603:0:0:0,-4.51545,-54.6074 dDocent_Contig_6451 94 . C A 6623.66 . AB=0.747059;ABP=183.268;AC=4;AF=0.5;AN=8;AO=254;CIGAR=1X;DP=340;DPB=340;DPRA=0;EPP=554.564;EPPR=189.757;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=8567;QR=2917;RO=86;RPL=254;RPP=554.564;RPPR=189.757;RPR=0;RUN=1;SAF=254;SAP=554.564;SAR=0;SRF=86;SRP=189.757;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:124:23,101:23:761:101:3439:-272.415,0,-31.4706 0/1:106:36,70:36:1237:70:2325:-177.603,0,-79.7237 0/1:52:16,36:16:555:36:1214:-93.9056,0,-34.6246 0/1:58:11,47:11:364:47:1589:-125.84,0,-15.6196 dDocent_Contig_6452 24 . G A 353.904 . AB=0;ABP=0;AC=0;AF=0;AN=8;AO=3;CIGAR=1X3M1X2M2X;DP=236;DPB=236;DPRA=1.22222;EPP=9.52472;EPPR=441.648;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.975248;PAO=0;PQA=0;PQR=0;PRO=0;QA=115;QR=7916;RO=202;RPL=0;RPP=9.52472;RPPR=441.648;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=202;SRP=441.648;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:55:47,3,4:47:1846:3,4:115,163:0,-4.71447,-155.639,-0.683706,-143.094,-151.327 0|0:91:72,0,18:72:2824:0,18:0,714:-37.0891,-58.7633,-290.998,0,-232.231,-226.812 0|0:61:56,0,2:56:2197:0,2:0,77:0,-16.8577,-197.542,-10.5373,-191.22,-190.618 0|0:29:27,0,1:27:1049:0,1:0,41:0,-8.12781,-94.3079,-4.73383,-90.9231,-90.6221 dDocent_Contig_6453 8 . A G 371.26 . AB=0.159763;ABP=172.938;AC=2;AF=0.25;AN=8;AO=29;CIGAR=1X;DP=379;DPB=379;DPRA=0.728291;EPP=65.983;EPPR=763.026;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1082;QR=13341;RO=350;RPL=0;RPP=65.983;RPPR=763.026;RPR=29;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=350;SRP=763.026;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:119:119,0:119:4583:0:0:0,-35.8226,-412.512 0/0:91:89,2:89:3401:2:74:0,-20.3683,-299.202 0/1:94:83,11:83:3153:11:421:-9.94573,0,-255.625 0/1:75:59,16:59:2204:16:587:-30.5783,0,-176.005 dDocent_Contig_6455 12 . A C 475.337 . AB=0.162011;ABP=180.622;AC=4;AF=0.5;AN=8;AO=29;CIGAR=1X;DP=179;DPB=179;DPRA=0;EPP=65.983;EPPR=328.731;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.993333;PAO=0;PQA=0;PQR=0;PRO=0;QA=1177;QR=5960;RO=150;RPL=0;RPP=65.983;RPPR=328.731;RPR=29;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=150;SRP=328.731;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:83:75,8:75:2976:8:328:-4.90485,0,-242.945 0/1:48:44,4:44:1739:4:163:-0.608988,0,-142.28 0/1:32:20,12:20:797:12:485:-34.3683,0,-62.4142 0/1:16:11,5:11:448:5:201:-13.654,0,-35.8595 dDocent_Contig_6456 15 . C G 934.833 . AB=0.452055;ABP=4.46786;AC=3;AF=0.375;AN=8;AO=33;CIGAR=1X;DP=104;DPB=104;DPRA=0.784946;EPP=74.6689;EPPR=157.185;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1331;QR=2853;RO=71;RPL=0;RPP=74.6689;RPPR=157.185;RPR=33;RUN=1;SAF=33;SAP=74.6689;SAR=0;SRF=71;SRP=157.185;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:31:31,0:31:1231:0:0:0,-9.33193,-111.058 0/1:40:18,22:18:730:22:886:-68.0074,0,-53.9831 0/1:21:14,7:14:565:7:285:-19.7028,0,-44.8712 0/1:12:8,4:8:327:4:160:-11.1711,0,-26.1877 dDocent_Contig_6457 14 . A G 110.184 . AB=0.162791;ABP=45.4803;AC=1;AF=0.125;AN=8;AO=14;CIGAR=1X;DP=494;DPB=494;DPRA=0.444444;EPP=33.4109;EPPR=1045.32;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=532;QR=19203;RO=480;RPL=0;RPP=33.4109;RPPR=1045.32;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=480;SRP=1045.32;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:151:151,0:151:6019:0:0:0,-45.4555,-541.494 0/0:191:191,0:191:7655:0:0:0,-57.4967,-688.534 0/0:109:102,7:102:4080:7:251:0,-9.88863,-344.251 0/1:43:36,7:36:1449:7:281:-12.7174,0,-117.715 dDocent_Contig_6458 130 . T C 2804.15 . AB=0.525114;ABP=4.21006;AC=4;AF=0.5;AN=8;AO=115;CIGAR=1X;DP=219;DPB=219;DPRA=0;EPP=252.73;EPPR=228.843;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3917;QR=3388;RO=104;RPL=0;RPP=252.73;RPPR=228.843;RPR=115;RUN=1;SAF=0;SAP=252.73;SAR=115;SRF=0;SRP=228.843;SRR=104;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:38:19,19:19:626:19:640:-46.4722,0,-45.2098 0/1:48:19,29:19:625:29:995:-75.4036,0,-42.1118 0/1:66:34,32:34:1108:32:1056:-75.4661,0,-80.1456 0/1:67:32,35:32:1029:35:1226:-90.4706,0,-72.733 dDocent_Contig_6459 107 . N A 352.185 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=12;CIGAR=1X;DP=12;DPB=12;DPRA=0;EPP=29.068;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=381;QR=0;RO=0;RPL=0;RPP=29.068;RPPR=0;RPR=12;RUN=1;SAF=0;SAP=29.068;SAR=12;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:7:0,7:0:0:7:217:-19.8343,-2.10721,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:5:0,5:0:0:5:164:-15.0831,-1.50515,0 dDocent_Contig_6460 191 . C T 2257.89 . AB=0.255208;ABP=202.876;AC=4;AF=0.5;AN=8;AO=98;CIGAR=2X;DP=384;DPB=384;DPRA=0;EPP=215.815;EPPR=624.051;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3862;QR=11328;RO=286;RPL=98;RPP=215.815;RPPR=624.051;RPR=0;RUN=1;SAF=0;SAP=215.815;SAR=98;SRF=0;SRP=624.051;SRR=286;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:138:113,25:113:4457:25:994:-48.2202,0,-359.546 0|1:124:100,24:100:3991:24:958:-49.1939,0,-321.853 0|1:60:31,29:31:1234:29:1133:-84.1929,0,-93.2704 0|1:62:42,20:42:1646:20:777:-51.58,0,-129.696 dDocent_Contig_6461 12 . T C 319.071 . AB=0.139665;ABP=204.884;AC=2;AF=0.25;AN=8;AO=28;CIGAR=1X1M1X;DP=321;DPB=321;DPRA=0.940476;EPP=63.8115;EPPR=639.252;GTI=0;LEN=1;MEANALT=1;MQM=58.9286;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.892857;PAIREDR=0.996587;PAO=0;PQA=0;PQR=0;PRO=0;QA=1107;QR=11772;RO=293;RPL=0;RPP=63.8115;RPPR=639.252;RPR=28;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=293;SRP=639.252;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:104:87,17:87:3488:17:666:-28.8969,0,-282.646 0|0:84:84,0:84:3387:0:0:0,-25.2865,-304.869 0|1:75:67,8:67:2686:8:318:-6.40815,0,-219.281 0|0:58:55,3:55:2211:3:123:0,-6.06362,-187.763 dDocent_Contig_6462 11 . T C 256.43 . AB=0.173913;ABP=66.7383;AC=1;AF=0.125;AN=8;AO=16;CIGAR=3X;DP=191;DPB=191;DPRA=0;EPP=37.7539;EPPR=356.96;GTI=0;LEN=1;MEANALT=1.75;MQM=56.125;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0.957055;PAO=0;PQA=0;PQR=0;PRO=0;QA=611;QR=6435;RO=163;RPL=0;RPP=37.7539;RPPR=356.96;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=163;SRP=356.96;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:67:62,1,4:62:2463:1,4:36,152:0,-15.7876,-218.268,-6.18218,-206.109,-207.785 0|0:55:49,3,3:49:1921:3,3:116,113:0,-5.28789,-162.354,-5.49757,-154.001,-162.556 0|1:47:38,9,0:38:1500:9,0:346,0:-17.2194,0,-121.105,-28.6586,-123.814,-152.088 0|0:22:14,3,5:14:551:3,5:113,195:-11.8215,-6.78098,-51.2042,0,-36.0806,-43.8324 dDocent_Contig_6463 184 . A T 301.791 . AB=0.134078;ABP=211.193;AC=2;AF=0.25;AN=8;AO=26;CIGAR=1X;DP=269;DPB=269;DPRA=0;EPP=59.4686;EPPR=530.678;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1046;QR=9705;RO=243;RPL=26;RPP=59.4686;RPPR=530.678;RPR=0;RUN=1;SAF=0;SAP=59.4686;SAR=26;SRF=0;SRP=530.678;SRR=243;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:86:71,15:71:2819:15:605:-28.8993,0,-227.926 0/1:93:84,9:84:3368:9:359:-4.67748,0,-275.166 0/0:60:59,1:59:2348:1:41:0,-13.9672,-207.372 0/0:30:29,1:29:1170:1:41:0,-4.93633,-101.483 dDocent_Contig_6464 54 . T G 7081.07 . AB=0.468451;ABP=7.53178;AC=4;AF=0.5;AN=8;AO=245;CIGAR=1X;DP=523;DPB=523;DPRA=0;EPP=535.021;EPPR=606.68;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=9693;QR=11131;RO=278;RPL=245;RPP=535.021;RPPR=606.68;RPR=0;RUN=1;SAF=245;SAP=535.021;SAR=0;SRF=278;SRP=606.68;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:121:87,34:87:3497:34:1335:-83.9785,0,-278.332 0/1:139:105,34:105:4198:34:1347:-79.6394,0,-335.928 0/1:155:34,121:34:1352:121:4774:-382.906,0,-75.2769 0/1:108:52,56:52:2084:56:2237:-168.981,0,-155.23 dDocent_Contig_6465 30 . C A 9417.51 . AB=0.482759;ABP=4.7325;AC=4;AF=0.5;AN=8;AO=322;CIGAR=1M1D1M1X;DP=667;DPB=586;DPRA=0;EPP=702.224;EPPR=745.654;GTI=0;LEN=1;MEANALT=1.75;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=12769;QR=13528;RO=342;RPL=0;RPP=702.224;RPPR=745.654;RPR=322;RUN=1;SAF=322;SAP=702.224;SAR=0;SRF=342;SRP=745.654;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:211:94,116:94:3719:116:4631:-353.099,0,-271.118 0|1:201:121,80:121:4765:80:3169:-224.789,0,-368.267 0|1:175:76,97:76:3010:97:3840:-293.453,0,-218.842 0|1:80:51,29:51:2034:29:1129:-77.8085,0,-159.175 dDocent_Contig_6466 10 . A G 373.914 . AB=0.155844;ABP=161.443;AC=1;AF=0.125;AN=8;AO=52;CIGAR=1X;DP=497;DPB=497;DPRA=0;EPP=115.927;EPPR=969.316;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.75;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2005;QR=17759;RO=445;RPL=0;RPP=115.927;RPPR=969.316;RPR=52;RUN=1;SAF=52;SAP=115.927;SAR=0;SRF=445;SRP=969.316;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:185:169,16:169:6695:16:607:0,-0.731017,-547.317 0/1:154:130,24:130:5200:24:946:-39.0902,0,-421.498 0/0:111:103,8:103:4151:8:318:0,-4.42851,-344.56 0/0:47:43,4:43:1713:4:134:0,-1.76168,-142.006 dDocent_Contig_6467 67 . T C 72.84 . AB=0.108333;ABP=162.903;AC=1;AF=0.125;AN=8;AO=17;CIGAR=1X;DP=283;DPB=283;DPRA=2.93056;EPP=39.9253;EPPR=580.622;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=637;QR=10208;RO=266;RPL=17;RPP=39.9253;RPPR=580.622;RPR=0;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=266;SRP=580.622;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:120:107,13:107:4091:13:494:-8.68194,0,-332.136 0/0:91:87,4:87:3356:4:143:0,-14.1748,-288.948 0/0:35:35,0:35:1339:0:0:0,-10.536,-120.795 0/0:37:37,0:37:1422:0:0:0,-11.1381,-128.26 dDocent_Contig_6468 107 . N C 102.651 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=7.37776;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=111;QR=0;RO=0;RPL=0;RPP=11.6962;RPPR=0;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:4:0,4:0:0:4:111:-10.2649,-1.20412,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_6469 102 . N C 57.0006 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X11I5X;DP=2;DPB=5.66667;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=60;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. 1|1:2:0,2:0:0:2:60:-5.69897,-0.60206,0 .:.:.:.:.:.:.:. dDocent_Contig_6470 144 . A T 35.5901 . AB=0.107143;ABP=78.0812;AC=2;AF=0.25;AN=8;AO=6;CIGAR=2X;DP=102;DPB=102;DPRA=1.21739;EPP=16.0391;EPPR=209.3;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.842105;PAO=0;PQA=0;PQR=0;PRO=0;QA=244;QR=3724;RO=95;RPL=0;RPP=16.0391;RPPR=209.3;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=209.3;SRR=95;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:33:28,4:28:1060:4:162:-4.9491,0,-85.6632 0|1:23:21,2:21:819:2:82:-0.855988,0,-67.1022 0|0:24:24,0:24:972:0:0:0,-7.22472,-87.7788 0|0:22:22,0:22:873:0:0:0,-6.62266,-78.8796 dDocent_Contig_6471 13 . C A 814.558 . AB=0.173913;ABP=257.922;AC=4;AF=0.5;AN=8;AO=48;CIGAR=1X;DP=276;DPB=276;DPRA=0;EPP=107.241;EPPR=498.106;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=0.973684;PAO=0;PQA=0;PQR=0;PRO=0;QA=1895;QR=9110;RO=228;RPL=0;RPP=107.241;RPPR=498.106;RPR=48;RUN=1;SAF=48;SAP=107.241;SAR=0;SRF=228;SRP=498.106;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:115:103,12:103:4126:12:484:-9.29259,0,-336.686 0/1:70:53,17:53:2127:17:677:-40.1877,0,-170.533 0/1:50:37,13:37:1462:13:502:-30.4695,0,-116.768 0/1:41:35,6:35:1395:6:232:-8.90398,0,-113.46 dDocent_Contig_6472 96 . A C 504.214 . AB=0.294118;ABP=34.305;AC=3;AF=0.375;AN=8;AO=27;CIGAR=1X;DP=109;DPB=109;DPRA=0;EPP=61.6401;EPPR=181.071;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=964;QR=2872;RO=82;RPL=27;RPP=61.6401;RPPR=181.071;RPR=0;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=82;SRP=181.071;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:24:22,2:22:786:2:71:0,-0.482661,-64.3227 0/1:28:23,5:23:787:5:180:-8.12322,0,-62.711 0/1:19:7,12:7:251:12:425:-32.8675,0,-17.2183 0/1:38:30,8:30:1048:8:288:-14.8283,0,-83.1906 dDocent_Contig_6473 13 . C T 199.425 . AB=0.133333;ABP=160.659;AC=1;AF=0.125;AN=8;AO=19;CIGAR=1X;DP=242;DPB=242;DPRA=1.68889;EPP=44.2683;EPPR=487.249;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=723;QR=8843;RO=223;RPL=0;RPP=44.2683;RPPR=487.249;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=223;SRP=487.249;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:135:117,18:117:4648:18:685:-21.3404,0,-377.588 0/0:69:69,0:69:2725:0:0:0,-20.7711,-245.365 0/0:21:21,0:21:833:0:0:0,-6.32163,-75.2781 0/0:17:16,1:16:637:1:38:0,-1.32024,-53.8674 dDocent_Contig_6474 22 . G A 197.97 . AB=0.156627;ABP=88.0117;AC=2;AF=0.25;AN=8;AO=18;CIGAR=1M1I1X;DP=187;DPB=196;DPRA=2.0641;EPP=42.0968;EPPR=369.989;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=730;QR=6793;RO=169;RPL=0;RPP=42.0968;RPPR=369.989;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=169;SRP=369.989;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:78:73,5:73:2933:5:203:0,-4.82728,-245.409 0|1:73:63,10:63:2523:10:406:-14.9252,0,-205.237 0|0:26:26,0:26:1052:0:0:0,-7.82678,-94.97 0|1:10:7,3:7:285:3:121:-8.26969,0,-23.0141 dDocent_Contig_6475 35 . G T 451.831 . AB=0.169399;ABP=176.74;AC=3;AF=0.375;AN=8;AO=36;CIGAR=1X;DP=277;DPB=277;DPRA=0;EPP=81.1833;EPPR=526.335;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.995851;PAO=0;PQA=0;PQR=0;PRO=0;QA=1356;QR=8713;RO=241;RPL=0;RPP=81.1833;RPPR=526.335;RPR=36;RUN=1;SAF=36;SAP=81.1833;SAR=0;SRF=241;SRP=526.335;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:94:89,5:89:3225:5:194:0,-10.464,-272.604 0/1:95:74,21:74:2658:21:789:-42.7323,0,-210.838 0/1:61:54,7:54:1967:7:261:-5.48082,0,-158.917 0/1:27:24,3:24:863:3:112:-2.31868,0,-69.8556 dDocent_Contig_6476 41 . G C 243.501 . AB=0.189189;ABP=65.1027;AC=1;AF=0.125;AN=8;AO=14;CIGAR=1X;DP=273;DPB=273;DPRA=1.11558;EPP=33.4109;EPPR=556.769;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=530;QR=10282;RO=259;RPL=0;RPP=33.4109;RPPR=556.769;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=259;SRP=565.422;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:74:60,14:60:2379:14:530:-25.748,0,-191.98 0/0:105:105,0:105:4155:0:0:0,-31.6081,-373.921 0/0:46:46,0:46:1815:0:0:0,-13.8474,-163.557 0/0:48:48,0:48:1933:0:0:0,-14.4494,-174.166 dDocent_Contig_6477 1 . N T 333.757 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=9;CIGAR=1X;DP=9;DPB=9;DPRA=0;EPP=22.5536;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0.555556;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=359;QR=0;RO=0;RPL=0;RPP=22.5536;RPPR=0;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:6:0,6:0:0:6:238:-21.7942,-1.80618,0 ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:121:-11.2802,-0.90309,0 ./.:.:.:.:.:.:.:. dDocent_Contig_6478 26 . G A 7836.64 . AB=0.182059;ABP=1989.98;AC=4;AF=0.5;AN=8;AO=412;CIGAR=1X;DP=2263;DPB=2263;DPRA=0;EPP=897.657;EPPR=3643.83;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.11022e-16;PAIRED=0.621359;PAIREDR=0.573217;PAO=0;PQA=0;PQR=0;PRO=0;QA=16330;QR=72887;RO=1837;RPL=0;RPP=897.657;RPPR=3992.01;RPR=412;RUN=1;SAF=412;SAP=897.657;SAR=0;SRF=1796;SRP=3643.83;SRR=41;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:743:609,129:609:24172:129:5098:-236.153,0,-1950.87 0/1:659:557,101:557:22073:101:4010:-162.449,0,-1786.29 0/1:613:474,138:474:18791:138:5464:-306.97,0,-1505.02 0/1:248:197,44:197:7851:44:1758:-85.4905,0,-633.226 dDocent_Contig_6479 12 . C A 102.23 . AB=0.171429;ABP=35.8306;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=97;DPB=97;DPRA=1.69355;EPP=16.0391;EPPR=200.614;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=0.978022;PAO=0;PQA=0;PQR=0;PRO=0;QA=242;QR=3658;RO=91;RPL=0;RPP=16.0391;RPPR=200.614;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=91;SRP=200.614;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:35:29,6:29:1162:6:242:-11.6209,0,-94.3187 0/0:12:12,0:12:491:0:0:0,-3.61236,-44.541 0/0:33:33,0:33:1327:0:0:0,-9.93399,-119.689 0/0:17:17,0:17:678:0:0:0,-5.11751,-61.3476 dDocent_Contig_6480 20 . G T 97.4642 . AB=0.130435;ABP=84.8654;AC=1;AF=0.125;AN=8;AO=25;CIGAR=1X;DP=512;DPB=512;DPRA=0.688623;EPP=57.2971;EPPR=1058.35;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.995885;PAO=0;PQA=0;PQR=0;PRO=0;QA=1009;QR=19280;RO=486;RPL=0;RPP=57.2971;RPPR=1058.35;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=486;SRP=1058.35;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:167:166,0:166:6543:0:0:0,-49.971,-588.19 0/0:205:190,15:190:7557:15:614:0,-6.11469,-624.15 0/1:69:60,9:60:2422:9:354:-11.4454,0,-197.349 0/0:71:70,1:70:2758:1:41:0,-17.2786,-244.251 dDocent_Contig_6481 28 . A G 5128.3 . AB=0.366472;ABP=82.4574;AC=4;AF=0.5;AN=8;AO=188;CIGAR=1X;DP=513;DPB=513;DPRA=0;EPP=411.247;EPPR=704.396;GTI=0;LEN=1;MEANALT=1.25;MQM=59.8564;MQMR=60;NS=4;NUMALT=1;ODDS=2.77556e-17;PAIRED=0.978723;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7486;QR=12779;RO=323;RPL=0;RPP=411.247;RPPR=704.396;RPR=188;RUN=1;SAF=188;SAP=411.247;SAR=0;SRF=323;SRP=704.396;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:171:118,53:118:4711:53:2109:-138.308,0,-372.436 0/1:150:88,62:88:3501:62:2479:-178.103,0,-269.985 0/1:145:89,54:89:3487:54:2142:-149.602,0,-270.55 0/1:47:28,19:28:1080:19:756:-54.2153,0,-83.3394 dDocent_Contig_6482 53 . A G 375.278 . AB=0.5;ABP=3.0103;AC=1;AF=0.125;AN=8;AO=21;CIGAR=1X;DP=118;DPB=118;DPRA=1.73684;EPP=48.6112;EPPR=213.643;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=702;QR=3262;RO=97;RPL=21;RPP=48.6112;RPPR=213.643;RPR=0;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=97;SRP=213.643;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:32:16,16:16:531:16:536:-38.9256,0,-38.4742 0/0:44:40,4:40:1356:4:133:0,-0.946681,-110.038 0/0:23:22,1:22:758:1:33:0,-3.62455,-65.2407 0/0:19:19,0:19:617:0:0:0,-5.71957,-55.8352 dDocent_Contig_6483 38 . G C 17831.2 . AB=0.495868;ABP=3.18976;AC=4;AF=0.5;AN=8;AO=600;CIGAR=1X;DP=1210;DPB=1210;DPRA=0;EPP=1305.89;EPPR=1327.61;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=5.55112e-17;PAIRED=0.998333;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=23952;QR=23959;RO=610;RPL=0;RPP=1305.89;RPPR=1327.61;RPR=600;RUN=1;SAF=600;SAP=1305.89;SAR=0;SRF=610;SRP=1327.61;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:399:227,172:227:8914:172:6889:-499.582,0,-681.683 0/1:339:148,191:148:5838:191:7613:-582.72,0,-423.194 0/1:269:132,137:132:5165:137:5417:-406.397,0,-383.769 0/1:203:103,100:103:4042:100:4033:-301.824,0,-302.672 dDocent_Contig_6484 35 . A G 1183.32 . AB=0.27907;ABP=75.9314;AC=3;AF=0.375;AN=8;AO=51;CIGAR=1X;DP=239;DPB=239;DPRA=0;EPP=113.755;EPPR=411.247;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2062;QR=7501;RO=188;RPL=0;RPP=113.755;RPPR=411.247;RPR=51;RUN=1;SAF=51;SAP=113.755;SAR=0;SRF=188;SRP=411.247;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:67:43,24:43:1715:24:972:-67.6057,0,-134.405 0/0:67:64,3:64:2546:3:123:0,-8.70422,-217.807 0/1:55:44,11:44:1766:11:448:-24.1191,0,-142.598 0/1:50:37,13:37:1474:13:519:-32.005,0,-117.857 dDocent_Contig_6485 38 . G A 109.638 . AB=0.113208;ABP=140.755;AC=1;AF=0.125;AN=8;AO=12;CIGAR=1X;DP=295;DPB=295;DPRA=1.68254;EPP=29.068;EPPR=617.537;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=488;QR=11359;RO=283;RPL=0;RPP=29.068;RPPR=617.537;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=283;SRP=617.537;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:106:94,12:94:3777:12:488:-12.3617,0,-308.026 0/0:121:121,0:121:4854:0:0:0,-36.4246,-436.741 0/0:45:45,0:45:1816:0:0:0,-13.5463,-163.645 0/0:23:23,0:23:912:0:0:0,-6.92369,-82.3853 dDocent_Contig_6486 56 . A T 846.834 . AB=0.256579;ABP=81.2405;AC=3;AF=0.375;AN=8;AO=39;CIGAR=1X;DP=180;DPB=180;DPRA=1.80952;EPP=87.6977;EPPR=309.188;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1498;QR=5539;RO=141;RPL=39;RPP=87.6977;RPPR=309.188;RPR=0;RUN=1;SAF=39;SAP=87.6977;SAR=0;SRF=141;SRP=309.188;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:43:27,16:27:1067:16:630:-44.0908,0,-83.3795 0/1:80:71,9:71:2763:9:346:-7.41249,0,-224.711 0/1:29:15,14:15:602:14:522:-38.5781,0,-45.7897 0/0:28:28,0:28:1107:0:0:0,-8.42884,-99.9198 dDocent_Contig_6487 122 . C A 1579.2 . AB=0.524194;ABP=3.64073;AC=4;AF=0.5;AN=8;AO=65;CIGAR=1X;DP=124;DPB=124;DPRA=0;EPP=144.156;EPPR=131.127;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2237;QR=1994;RO=59;RPL=0;RPP=144.156;RPPR=131.127;RPR=65;RUN=1;SAF=0;SAP=144.156;SAR=65;SRF=0;SRP=131.127;SRR=59;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:33:17,16:17:574:16:555:-40.3441,0,-42.0464 0/1:55:16,39:16:523:39:1340:-104.343,0,-30.8228 0/1:24:16,8:16:557:8:273:-17.678,0,-43.2341 0/1:12:10,2:10:340:2:69:-2.9403,0,-27.3171 dDocent_Contig_6488 20 . T C 99.7672 . AB=0.181818;ABP=32.0291;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X1M1X;DP=130;DPB=130;DPRA=1.02062;EPP=16.0391;EPPR=270.101;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=236;QR=4753;RO=123;RPL=0;RPP=16.0391;RPPR=270.101;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=123;SRP=270.101;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:42:42,0:42:1605:0:0:0,-12.6433,-144.707 0|0:27:26,0:26:989:0:0:0,-7.82678,-89.1997 0|0:28:28,0:28:1095:0:0:0,-8.42884,-98.8479 0|1:33:27,6:27:1064:6:236:-11.6757,0,-86.1235 dDocent_Contig_6489 52 . G T 43.2161 . AB=0.111111;ABP=73.9451;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=152;DPB=152;DPRA=1.65306;EPP=16.0391;EPPR=320.045;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=240;QR=5751;RO=146;RPL=6;RPP=16.0391;RPPR=320.045;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=146;SRP=320.045;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:54:48,6:48:1875:6:240:-5.71953,0,-152.691 0/0:55:55,0:55:2195:0:0:0,-16.5566,-197.715 0/0:29:29,0:29:1155:0:0:0,-8.72987,-104.231 0/0:14:14,0:14:526:0:0:0,-4.21442,-47.6644 dDocent_Contig_6490 34 . A T 132.165 . AB=0.194444;ABP=32.2045;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=93;DPB=93;DPRA=1.89474;EPP=18.2106;EPPR=189.757;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.9302;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=0.988372;PAO=0;PQA=0;PQR=0;PRO=0;QA=282;QR=3386;RO=86;RPL=0;RPP=18.2106;RPPR=189.757;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=86;SRP=189.757;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:24:24,0:24:927:0:0:0,-7.22472,-83.7083 0/1:36:29,7:29:1141:7:282:-14.9155,0,-92.1232 0/0:22:22,0:22:888:0:0:0,-6.62266,-80.2265 0/0:11:11,0:11:430:0:0:0,-3.31133,-39.0477 dDocent_Contig_6491 98 . N A 1034.33 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=35;CIGAR=1X;DP=35;DPB=35;DPRA=0;EPP=79.0118;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=4;NUMALT=1;ODDS=3.38813e-21;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1131;QR=0;RO=0;RPL=35;RPP=79.0118;RPPR=0;RPR=0;RUN=1;SAF=35;SAP=79.0118;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:30:0,30:0:0:30:1019:-92.0173,-9.0309,0 1/1:1:0,1:0:0:1:35:-3.49863,-0.30103,0 1/1:2:0,2:0:0:2:36:-3.41967,-0.60206,0 1/1:2:0,2:0:0:2:41:-3.89396,-0.60206,0 dDocent_Contig_6492 55 . C G 1242.86 . AB=0.376923;ABP=20.1148;AC=4;AF=0.5;AN=8;AO=49;CIGAR=1X;DP=130;DPB=130;DPRA=0;EPP=100.904;EPPR=178.9;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.959184;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1883;QR=3164;RO=81;RPL=49;RPP=109.412;RPPR=178.9;RPR=0;RUN=1;SAF=48;SAP=100.904;SAR=1;SRF=81;SRP=178.9;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:12,6:12:478:6:220:-14.7287,0,-37.9535 0/1:31:26,5:26:1033:5:180:-7.21599,0,-83.9377 0/1:54:28,26:28:1068:26:1010:-74.9456,0,-80.1456 0/1:27:15,12:15:585:12:473:-34.7939,0,-44.8593 dDocent_Contig_6493 107 . N T 240.337 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=8;CIGAR=1X;DP=8;DPB=8;DPRA=0;EPP=20.3821;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=251;QR=0;RO=0;RPL=0;RPP=20.3821;RPPR=0;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:66:-6.26831,-0.60206,0 1/1:1:0,1:0:0:1:34:-3.39891,-0.30103,0 1/1:5:0,5:0:0:5:151:-13.8881,-1.50515,0 ./.:.:.:.:.:.:.:. dDocent_Contig_6494 90 . C T 564.804 . AB=0.263636;ABP=56.389;AC=3;AF=0.375;AN=8;AO=32;CIGAR=1X;DP=157;DPB=157;DPRA=0;EPP=72.4974;EPPR=274.444;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1155;QR=4562;RO=125;RPL=32;RPP=72.4974;RPPR=274.444;RPR=0;RUN=1;SAF=32;SAP=72.4974;SAR=0;SRF=125;SRP=274.444;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:62:47,15:47:1710:15:537:-29.9977,0,-135.514 0/0:47:44,3:44:1608:3:111:0,-3.79449,-134.65 0/1:26:19,7:19:701:7:252:-15.2015,0,-55.5956 0/1:22:15,7:15:543:7:255:-16.6792,0,-42.582 dDocent_Contig_6495 1 . N G 68.1097 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=41;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=75;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:75:-6.80989,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_6496 107 . N G 356.913 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=16;CIGAR=1X;DP=16;DPB=16;DPRA=0;EPP=37.7539;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=26.25;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=0.0625;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=576;QR=0;RO=0;RPL=0;RPP=37.7539;RPPR=0;RPR=16;RUN=1;SAF=0;SAP=37.7539;SAR=16;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:9:0,9:0:0:9:327:-24.8546,-2.70927,0 1/1:4:0,4:0:0:4:144:-4.06533,-1.20412,0 1/1:1:0,1:0:0:1:36:-1.98933,-0.30103,0 1/1:2:0,2:0:0:2:69:-4.17798,-0.60206,0 dDocent_Contig_6497 192 . C A 47.4091 . AB=0.214286;ABP=12.937;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=47;DPB=47;DPRA=1.27273;EPP=9.52472;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=111;QR=1747;RO=44;RPL=3;RPP=9.52472;RPPR=98.5551;RPR=0;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=98.5551;SRR=44;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:11,3:11:447:3:111:-6.13881,0,-36.3717 0/0:13:13,0:13:501:0:0:0,-3.91339,-45.423 0/0:15:15,0:15:595:0:0:0,-4.51545,-53.887 0/0:5:5,0:5:204:0:0:0,-1.50515,-18.744 dDocent_Contig_6498 23 . A T 365.959 . AB=0.419355;ABP=4.76149;AC=1;AF=0.125;AN=8;AO=13;CIGAR=1X;DP=89;DPB=89;DPRA=1.60345;EPP=31.2394;EPPR=168.042;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.923077;PAIREDR=0.763158;PAO=0;PQA=0;PQR=0;PRO=0;QA=522;QR=3036;RO=76;RPL=0;RPP=31.2394;RPPR=168.042;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=76;SRP=168.042;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:18,13:18:709:13:522:-37.9938,0,-54.7982 0/0:24:24,0:24:960:0:0:0,-7.22472,-86.699 0/0:21:21,0:21:852:0:0:0,-6.32163,-76.9899 0/0:13:13,0:13:515:0:0:0,-3.91339,-46.695 dDocent_Contig_6499 1 . N G 75.9266 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=80;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:80:-7.59157,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_6500 20 . G A 3147.67 . AB=0.58011;ABP=13.0998;AC=4;AF=0.5;AN=8;AO=105;CIGAR=1X;DP=181;DPB=181;DPRA=0;EPP=231.015;EPPR=168.042;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4172;QR=2968;RO=76;RPL=0;RPP=231.015;RPPR=168.042;RPR=105;RUN=1;SAF=105;SAP=231.015;SAR=0;SRF=76;SRP=168.042;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:61:15,46:15:572:46:1814:-145.117,0,-33.4427 0/1:83:43,40:43:1686:40:1605:-119.697,0,-126.982 0/1:20:13,7:13:508:7:276:-19.1887,0,-40.0416 0/1:17:5,12:5:202:12:477:-38.1633,0,-13.444 dDocent_Contig_6501 19 . G C 729.615 . AB=0.397059;ABP=9.26925;AC=3;AF=0.375;AN=8;AO=27;CIGAR=1X;DP=74;DPB=74;DPRA=3.77778;EPP=61.6401;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1086;QR=1861;RO=47;RPL=0;RPP=61.6401;RPPR=105.07;RPR=27;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:33:18,15:18:701:15:607:-45.0341,0,-53.4787 0/1:25:17,8:17:683:8:316:-21.2772,0,-54.2748 0/1:10:6,4:6:236:4:163:-12.0481,0,-18.6002 0/0:6:6,0:6:241:0:0:0,-1.80618,-22.0665 dDocent_Contig_6502 9 . C T 203.316 . AB=0.23913;ABP=30.2009;AC=3;AF=0.375;AN=8;AO=11;CIGAR=2X;DP=71;DPB=71;DPRA=0.613333;EPP=26.8965;EPPR=133.299;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=417;QR=2316;RO=60;RPL=0;RPP=26.8965;RPPR=133.299;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:25:25,0:25:969:0:0:0,-7.52575,-87.5206 0|1:23:15,8:15:580:8:303:-20.7056,0,-45.6155 0|1:14:12,2:12:456:2:76:-3.00039,0,-37.1713 0|1:9:8,1:8:311:1:38:-1.088,0,-25.6447 dDocent_Contig_6503 9 . C A 2652.92 . AB=0.178571;ABP=480.424;AC=3;AF=0.375;AN=8;AO=95;CIGAR=1X1M1X2M;DP=532;DPB=532;DPRA=0;EPP=209.3;EPPR=660.966;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=4;NUMALT=4;ODDS=1.11022e-16;PAIRED=0.989474;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3705;QR=11894;RO=303;RPL=0;RPP=209.3;RPPR=660.966;RPR=95;RUN=1;SAF=95;SAP=209.3;SAR=0;SRF=303;SRP=660.966;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:216:115,0,27,29,45:115:4541:0,27,29,45:0,1055,1140,1776:-111.491,-146.11,-519.769,-59.3787,-433.037,-424.909,-52.3563,-426.015,-339.284,-417.285,0,-373.66,-286.929,-279.906,-360.114 0|1:161:97,0,34,1,29:97:3798:0,34,1,29:0,1339,41,1175:-80.9519,-110.152,-422.433,0,-312.276,-302.041,-106.768,-419.049,-308.891,-418.748,-13.2554,-325.539,-215.381,-322.155,-316.81 0|1:68:30,8,20,0,10:30:1158:8,20,0,10:318,766,0,373:-53.8286,-36.6736,-129.358,0,-68.9063,-89.0703,-62.8595,-131.766,-95.0909,-157.95,-32.3426,-101.248,-64.5735,-127.431,-124.421 0|1:87:61,0,14,0,8:61:2397:0,14,0,8:0,545,0,325:-26.4178,-44.7806,-241.931,0,-197.142,-192.927,-44.7806,-241.931,-197.142,-241.931,-17.971,-215.124,-170.335,-215.124,-212.716 dDocent_Contig_6504 42 . C G 315.134 . AB=0.166667;ABP=60.9162;AC=2;AF=0.25;AN=8;AO=10;CIGAR=1X2M1X3M1X;DP=104;DPB=104;DPRA=1.76471;EPP=24.725;EPPR=170.214;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=347;QR=2835;RO=77;RPL=0;RPP=24.725;RPPR=170.214;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=77;SRP=170.214;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:27:16,0,10,1:16:598:0,10,1:0,335,37:-22.2809,-27.0974,-76.0872,0,-48.9724,-45.9621,-24.0672,-73.0598,-45.9456,-72.7588 0|0:17:16,0,0,1:16:587:0,0,1:0,0,37:0,-4.81648,-52.7938,-4.81648,-52.7938,-52.7938,-1.41968,-49.7666,-49.7666,-49.4656 0|1:29:22,5,0,2:22:798:5,0,2:183,0,74:-8.3303,0,-63.6405,-14.953,-65.1457,-80.102,-8.89778,-59.091,-74.0475,-73.4454 0|1:31:23,5,0,2:23:852:5,0,2:164,0,74:-6.30011,0,-68.2042,-13.2238,-69.7094,-82.9525,-7.16104,-63.6554,-76.898,-76.296 dDocent_Contig_6505 71 . T A 158.74 . AB=0.545455;ABP=3.20771;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=36;DPB=36;DPRA=1.32;EPP=16.0391;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=228;QR=1148;RO=30;RPL=6;RPP=16.0391;RPPR=68.1545;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:10:10,0:10:389:0:0:0,-3.0103,-35.3684 0/1:11:5,6:5:176:6:228:-17.5729,0,-12.8718 0/0:9:9,0:9:349:0:0:0,-2.70927,-31.7708 0/0:6:6,0:6:234:0:0:0,-1.80618,-21.4311 dDocent_Contig_6506 48 . A G 68.8895 . AB=0.11215;ABP=142.817;AC=2;AF=0.25;AN=8;AO=15;CIGAR=1X;DP=192;DPB=192;DPRA=0;EPP=35.5824;EPPR=387.361;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=580;QR=6940;RO=177;RPL=0;RPP=35.5824;RPPR=387.361;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=177;SRP=387.361;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:62:55,7:55:2143:7:271:-6.09212,0,-174.392 0/1:45:40,5:40:1603:5:193:-4.19406,0,-130.961 0/0:53:51,2:51:2013:2:76:0,-8.73978,-174.157 0/0:32:31,1:31:1181:1:40:0,-5.63728,-102.578 dDocent_Contig_6507 14 . A T 1041.81 . AB=0.126904;ABP=241.2;AC=2;AF=0.25;AN=8;AO=25;CIGAR=1X2M;DP=240;DPB=240;DPRA=1.52713;EPP=57.2971;EPPR=376.504;GTI=0;LEN=1;MEANALT=2;MQM=58.08;MQMR=59.9826;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1005;QR=6814;RO=172;RPL=0;RPP=57.2971;RPPR=376.504;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=172;SRP=376.504;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:35:28,3,4,0:28:1120:3,4,0:122,163,0:-5.06641,-5.71032,-97.0533,0,-84.5081,-91.1175,-13.4953,-97.9564,-92.3216,-105.771 0|0:92:57,0,7,28:57:2267:0,7,28:0,281,1081:-71.5836,-88.7423,-275.386,-65.6098,-252.256,-250.148,0,-186.635,-163.505,-178.206 0|1:70:44,0,14,12:44:1720:0,14,12:0,561,481:-32.929,-46.1743,-187.558,0,-141.382,-137.167,-6.54525,-147.928,-101.751,-144.315 0|0:43:43,0,0,0:43:1707:0,0,0:0,0,0:0,-12.9443,-153.857,-12.9443,-153.857,-153.857,-12.9443,-153.857,-153.857,-153.857 dDocent_Contig_6508 13 . T G 2575.62 . AB=0.366412;ABP=43.6218;AC=4;AF=0.5;AN=8;AO=96;CIGAR=1X;DP=262;DPB=262;DPRA=0;EPP=211.472;EPPR=363.475;GTI=0;LEN=1;MEANALT=1;MQM=50.8542;MQMR=59.7289;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3846;QR=6653;RO=166;RPL=0;RPP=211.472;RPPR=363.475;RPR=96;RUN=1;SAF=96;SAP=211.472;SAR=0;SRF=166;SRP=363.475;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:114:67,47:67:2686:47:1863:-131.507,0,-207.407 0/1:75:47,28:47:1897:28:1135:-79.0164,0,-147.332 0/1:41:24,17:24:958:17:690:-49.5742,0,-74.1792 0/1:32:28,4:28:1112:4:158:-4.86226,0,-90.7269 dDocent_Contig_6509 29 . A G 559.92 . AB=0.163265;ABP=196.05;AC=1;AF=0.125;AN=8;AO=35;CIGAR=1X;DP=586;DPB=586;DPRA=0.915033;EPP=79.0118;EPPR=1197.32;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1414;QR=21951;RO=550;RPL=0;RPP=79.0118;RPPR=1197.32;RPR=35;RUN=1;SAF=35;SAP=79.0118;SAR=0;SRF=550;SRP=1197.32;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:196:163,32:163:6501:32:1291:-57.3899,0,-525.753 0/0:166:166,0:166:6629:0:0:0,-49.971,-596.327 0/0:140:140,0:140:5588:0:0:0,-42.1442,-502.717 0/0:84:81,3:81:3233:3:123:0,-13.8217,-279.572 dDocent_Contig_6510 16 . G C 459.375 . AB=0.097973;ABP=418.554;AC=1;AF=0.125;AN=8;AO=32;CIGAR=2X;DP=372;DPB=372;DPRA=0;EPP=72.4974;EPPR=684.853;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.828025;PAO=0;PQA=0;PQR=0;PRO=0;QA=1257;QR=12526;RO=314;RPL=0;RPP=72.4974;RPPR=684.853;RPR=32;RUN=1;SAF=32;SAP=72.4974;SAR=0;SRF=314;SRP=684.853;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:91:72,7,12:72:2903:7,12:259,477:-17.611,-18.1208,-255.302,0,-218.143,-235.702 0|0:121:103,7,11:103:4073:7,11:284,435:-4.78093,-12.3617,-345.403,0,-311.717,-331.828 0|0:76:71,3,2:71:2820:3,2:114,81:0,-12.0407,-243.276,-14.684,-237.5,-246.244 0|1:84:68,15,1:68:2730:15,1:600,41:-28.9434,0,-220.415,-46.0287,-221.546,-270.668 dDocent_Contig_6511 41 . A G 404.267 . AB=0.183206;ABP=117.203;AC=3;AF=0.375;AN=8;AO=24;CIGAR=1X;DP=171;DPB=171;DPRA=1.09167;EPP=55.1256;EPPR=313.59;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.986395;PAO=0;PQA=0;PQR=0;PRO=0;QA=935;QR=5792;RO=147;RPL=0;RPP=55.1256;RPPR=305.081;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=146;SRP=313.59;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:86:68,18:68:2686:18:690:-36.5329,0,-215.989 0/0:40:40,0:40:1592:0:0:0,-12.0412,-143.524 0/1:21:18,3:18:701:3:123:-5.14316,0,-57.0947 0/1:24:21,3:21:813:3:122:-4.14777,0,-66.2616 dDocent_Contig_6512 21 . G T 2523.07 . AB=0.562914;ABP=8.2017;AC=4;AF=0.5;AN=8;AO=85;CIGAR=1X;DP=151;DPB=151;DPRA=0;EPP=187.585;EPPR=146.327;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3377;QR=2631;RO=66;RPL=0;RPP=187.585;RPPR=146.327;RPR=85;RUN=1;SAF=85;SAP=187.585;SAR=0;SRF=66;SRP=146.327;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:56:22,34:22:884:34:1353:-105.175,0,-63.0095 0/1:60:21,39:21:831:39:1560:-122.573,0,-57.0384 0/1:19:12,7:12:483:7:263:-18.3024,0,-38.1018 0/1:16:11,5:11:433:5:201:-13.6535,0,-34.5044 dDocent_Contig_6513 49 . T C 1681.42 . AB=0.371257;ABP=27.0525;AC=4;AF=0.5;AN=8;AO=62;CIGAR=1X;DP=167;DPB=167;DPRA=0;EPP=17.0198;EPPR=231.015;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.983871;PAIREDR=0.866667;PAO=0;PQA=0;PQR=0;PRO=0;QA=2494;QR=4122;RO=105;RPL=21;RPP=17.0198;RPPR=231.015;RPR=41;RUN=1;SAF=62;SAP=137.642;SAR=0;SRF=105;SRP=231.015;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:74:49,25:49:1925:25:997:-67.7491,0,-151.177 0/1:15:13,2:13:507:2:82:-3.26423,0,-41.4558 0/1:61:31,30:31:1221:30:1214:-91.1679,0,-91.8032 0/1:17:12,5:12:469:5:201:-13.353,0,-37.4403 dDocent_Contig_6514 172 . A G 178.796 . AB=0.195652;ABP=40.0197;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X;DP=122;DPB=122;DPRA=1.81579;EPP=22.5536;EPPR=248.387;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=364;QR=4481;RO=113;RPL=9;RPP=22.5536;RPPR=248.387;RPR=0;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=248.387;SRR=113;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:46:37,9:37:1457:9:364:-19.2776,0,-117.531 0/0:48:48,0:48:1923:0:0:0,-14.4494,-173.267 0/0:18:18,0:18:703:0:0:0,-5.41854,-63.5903 0/0:10:10,0:10:398:0:0:0,-3.0103,-36.1784 dDocent_Contig_6515 1 . N G 378.867 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=15;CIGAR=1X;DP=15;DPB=15;DPRA=0;EPP=35.5824;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=28.6;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=0.133333;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=596;QR=0;RO=0;RPL=0;RPP=35.5824;RPPR=0;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:6:0,6:0:0:6:242:-15.8142,-1.80618,0 1/1:5:0,5:0:0:5:197:-8.26526,-1.50515,0 1/1:4:0,4:0:0:4:157:-13.2051,-1.20412,0 ./.:.:.:.:.:.:.:. dDocent_Contig_6518 1 . N G 136.051 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=5;CIGAR=1X;DP=5;DPB=5;DPRA=0;EPP=13.8677;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=38.8;MQMR=0;NS=1;NUMALT=1;ODDS=8.07091;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=196;QR=0;RO=0;RPL=0;RPP=13.8677;RPPR=0;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:5:0,5:0:0:5:196:-13.605,-1.50515,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_6521 15 . G C 249.236 . AB=0.170732;ABP=80.23;AC=2;AF=0.25;AN=8;AO=14;CIGAR=1X;DP=128;DPB=128;DPRA=1.78261;EPP=33.4109;EPPR=250.558;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=566;QR=4533;RO=114;RPL=0;RPP=33.4109;RPPR=250.558;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=114;SRP=250.558;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:48:37,11:37:1473:11:449:-26.3164,0,-118.372 0/1:34:31,3:31:1216:3:117:-0.674677,0,-99.4737 0/0:15:15,0:15:611:0:0:0,-4.51545,-55.3275 0/0:31:31,0:31:1233:0:0:0,-9.33193,-111.243 dDocent_Contig_6522 15 . T C 21646 . AB=0.84658;ABP=567.453;AC=5;AF=0.625;AN=8;AO=665;CIGAR=1X;DP=764;DPB=764;DPRA=0;EPP=1447.04;EPPR=217.986;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=26573;QR=3949;RO=99;RPL=0;RPP=1447.04;RPPR=217.986;RPR=665;RUN=1;SAF=665;SAP=1447.04;SAR=0;SRF=99;SRP=217.986;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:194:41,153:41:1631:153:6103:-490.622,0,-88.6189 0/1:224:24,200:24:963:200:8003:-652.378,0,-19.5375 1/1:223:16,207:16:635:207:8267:-686.066,-9.64915,0 0/1:123:18,105:18:720:105:4200:-340.936,0,-28.0967 dDocent_Contig_6523 9 . C A 53.8815 . AB=0.135135;ABP=45.7942;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=128;DPB=128;DPRA=1.21978;EPP=13.8677;EPPR=270.101;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=195;QR=4741;RO=123;RPL=0;RPP=13.8677;RPPR=270.101;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=123;SRP=270.101;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:37:32,5:32:1228:5:195:-6.78609,0,-99.6747 0/0:50:50,0:50:1943:0:0:0,-15.0515,-175.108 0/0:23:23,0:23:876:0:0:0,-6.92369,-79.1557 0/0:18:18,0:18:694:0:0:0,-5.41854,-62.7941 dDocent_Contig_6524 53 . G C 776.84 . AB=0.191304;ABP=193.382;AC=3;AF=0.375;AN=8;AO=45;CIGAR=1X;DP=274;DPB=274;DPRA=0;EPP=100.727;EPPR=500.277;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.995633;PAO=0;PQA=0;PQR=0;PRO=0;QA=1720;QR=8612;RO=229;RPL=45;RPP=100.727;RPPR=500.277;RPR=0;RUN=1;SAF=45;SAP=100.727;SAR=0;SRF=229;SRP=500.277;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:111:87,24:87:3293:24:907:-48.5293,0,-263.105 0/0:44:43,1:43:1634:1:39:0,-9.34875,-143.43 0/1:61:53,8:53:1950:8:312:-10.0821,0,-157.375 0/1:58:46,12:46:1735:12:462:-24.4706,0,-138.943 dDocent_Contig_6525 47 . A G 11467.7 . 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G A 190.68 . AB=0.1875;ABP=43.7254;AC=1;AF=0.125;AN=8;AO=9;CIGAR=2M1X5M;DP=115;DPB=119.5;DPRA=3.69231;EPP=22.5536;EPPR=215.815;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=362;QR=3801;RO=98;RPL=0;RPP=22.5536;RPPR=215.815;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=98;SRP=215.815;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:41:34,6,0:34:1294:6,0:179,0:-3.97057,0,-104.295,-14.2056,-106.101,-120.382 0|1:48:39,0,9:39:1519:0,9:0,362:-18.4942,-30.2344,-155.06,0,-125.225,-122.516 0|0:17:16,0,0:16:629:0,0:0,0:0,-4.81648,-56.5482,-4.81648,-56.5482,-56.5482 0|0:9:9,0,0:9:359:0,0:0,0:0,-2.70927,-32.6741,-2.70927,-32.6741,-32.6741 dDocent_Contig_6529 11 . A T 1096.99 . 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AB=0.473545;ABP=5.30815;AC=4;AF=0.5;AN=8;AO=179;CIGAR=1X;DP=378;DPB=378;DPRA=0;EPP=391.704;EPPR=435.133;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.98324;PAIREDR=0.979899;PAO=0;PQA=0;PQR=0;PRO=0;QA=7053;QR=7775;RO=199;RPL=0;RPP=391.704;RPPR=435.133;RPR=179;RUN=1;SAF=179;SAP=391.704;SAR=0;SRF=199;SRP=435.133;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:66:37,29:37:1395:29:1160:-84.8124,0,-105.93 0/1:111:62,49:62:2436:49:1916:-139.239,0,-185.988 0/1:112:54,58:54:2129:58:2285:-172.098,0,-158.087 0/1:89:46,43:46:1815:43:1692:-125.711,0,-136.777 dDocent_Contig_6531 23 . C G 3360.39 . 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AB=0.166667;ABP=49.335;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X;DP=109;DPB=109;DPRA=2.75862;EPP=22.5536;EPPR=220.158;GTI=0;LEN=1;MEANALT=1;MQM=58;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=355;QR=3986;RO=100;RPL=0;RPP=22.5536;RPPR=220.158;RPR=9;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=100;SRP=220.158;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:8:8,0:8:324:0:0:0,-2.40824,-29.5294 0/0:21:21,0:21:835:0:0:0,-6.32163,-75.4614 0/1:48:40,8:40:1589:8:314:-14.1566,0,-128.796 0/0:32:31,1:31:1238:1:41:0,-5.54154,-107.604 dDocent_Contig_6535 31 . G T 66.3551 . AB=0.0940171;ABP=170.511;AC=1;AF=0.125;AN=8;AO=15;CIGAR=1X2M1X;DP=246;DPB=246;DPRA=0;EPP=35.5824;EPPR=456.848;GTI=0;LEN=1;MEANALT=2.33333;MQM=56.3333;MQMR=60;NS=4;NUMALT=2;ODDS=2.77556e-17;PAIRED=0;PAIREDR=0.511962;PAO=0;PQA=0;PQR=0;PRO=0;QA=601;QR=8184;RO=209;RPL=0;RPP=35.5824;RPPR=456.848;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=209;SRP=456.848;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:72:64,0,6:64:2515:0,6:0,237:-0.368579,-19.6345,-226.544,0,-207.084,-205.278 0|0:57:49,4,4:49:1909:4,4:162,164:0,-1.39356,-157.062,-1.28883,-144.804,-156.96 0|0:63:50,5,6:50:1961:5,6:200,242:-4.3543,-3.05697,-162.801,0,-144.898,-159.44 0|1:54:46,6,2:46:1799:6,2:239,81:-5.67593,0,-146.159,-14.4496,-142.875,-161.739 dDocent_Contig_6536 98 . N A 50.3476 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=53;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:53:-5.03367,-0.60206,0 dDocent_Contig_6537 52 . G A 3255.14 . AB=0.269903;ABP=239.844;AC=4;AF=0.5;AN=8;AO=139;CIGAR=1X;DP=515;DPB=515;DPRA=0;EPP=304.845;EPPR=819.484;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5410;QR=14630;RO=376;RPL=139;RPP=304.845;RPPR=819.484;RPR=0;RUN=1;SAF=139;SAP=304.845;SAR=0;SRF=376;SRP=819.484;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:166:104,62:104:4082:62:2422:-168.156,0,-317.412 0/1:121:84,37:84:3253:37:1423:-91.8986,0,-256.423 0/1:127:104,23:104:4050:23:881:-41.3702,0,-326.285 0/1:101:84,17:84:3245:17:684:-31.4868,0,-261.734 dDocent_Contig_6538 95 . A T 76.3364 . AB=0.333333;ABP=5.9056;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=78;DPB=78;DPRA=0.95;EPP=16.0391;EPPR=159.356;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=208;QR=2541;RO=72;RPL=6;RPP=16.0391;RPPR=159.356;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=72;SRP=159.356;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:26:24,2:24:834:2:68:0,-1.36885,-68.9186 0/0:25:25,0:25:894:0:0:0,-7.52575,-80.7805 0/0:15:15,0:15:528:0:0:0,-4.51545,-47.8515 0/1:12:8,4:8:285:4:140:-9.33257,0,-22.3822 dDocent_Contig_6539 95 . A T 79.2349 . AB=0.133333;ABP=90.593;AC=1;AF=0.125;AN=8;AO=24;CIGAR=1X;DP=386;DPB=386;DPRA=1.4537;EPP=55.1256;EPPR=789.083;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.997238;PAO=0;PQA=0;PQR=0;PRO=0;QA=849;QR=12805;RO=362;RPL=24;RPP=55.1256;RPPR=789.083;RPR=0;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=362;SRP=789.083;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:83:76,7:76:2696:7:252:0,-1.95661,-219.854 0/1:75:65,10:65:2328:10:354:-9.62245,0,-187.201 0/0:156:149,7:149:5250:7:243:0,-24.7527,-450.426 0/0:72:72,0:72:2531:0:0:0,-21.6742,-228.041 dDocent_Contig_6540 35 . A T 176.003 . AB=0.138298;ABP=109.828;AC=1;AF=0.125;AN=8;AO=46;CIGAR=1X;DP=706;DPB=706;DPRA=0;EPP=102.898;EPPR=1436.18;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1828;QR=26148;RO=660;RPL=0;RPP=102.898;RPPR=1436.18;RPR=46;RUN=1;SAF=46;SAP=102.898;SAR=0;SRF=660;SRP=1436.18;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:294:277,17:277:10972:17:686:0,-26.433,-924.703 0/0:228:217,11:217:8624:11:424:0,-30.1269,-737.19 0/0:90:85,5:85:3339:5:193:0,-9.35446,-282.843 0/1:94:81,13:81:3213:13:525:-19.2993,0,-260.947 dDocent_Contig_6541 25 . A G 96.8283 . AB=0.0569106;ABP=422.511;AC=1;AF=0.125;AN=8;AO=14;CIGAR=2M1D2M1X1M;DP=246;DPB=239.571;DPRA=0;EPP=33.4109;EPPR=439.476;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=567;QR=7822;RO=201;RPL=0;RPP=33.4109;RPPR=439.476;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=201;SRP=439.476;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:61:49,9,3:49:1907:9,3:357,123:-6.34063,0,-153.989,-10.9102,-146.545,-166.804 0|0:90:74,11,5:74:2873:11,5:415,204:-2.70281,0,-232.721,-8.10985,-219.2,-242.743 0|0:63:54,7,2:54:2123:7,2:281,80:-0.201722,0,-172.513,-9.84436,-168.03,-183.955 0|1:32:24,4,4:24:919:4,4:155,160:-6.01467,-4.38586,-78.5748,0,-66.5964,-74.2905 dDocent_Contig_6542 61 . G A 1776.63 . AB=0.267658;ABP=129.141;AC=3;AF=0.375;AN=8;AO=76;CIGAR=1X7M;DP=332;DPB=326.75;DPRA=0;EPP=168.042;EPPR=513.306;GTI=0;LEN=1;MEANALT=3.25;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3023;QR=8297;RO=235;RPL=76;RPP=168.042;RPPR=513.306;RPR=0;RUN=1;SAF=76;SAP=168.042;SAR=0;SRF=235;SRP=513.306;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:171:133,12,22:133:4696:12,22:444,890:-33.408,-37.1306,-415.926,0,-346.149,-375.837 0|1:27:6,0,21:6:223:0,21:0,822:-66.1661,-67.9723,-86.2195,0,-18.623,-12.3014 0|1:71:39,2,29:39:1372:2,29:79,1156:-83.4866,-88.7258,-199.784,0,-105.171,-102.944 0|0:63:57,0,4:57:2006:0,4:0,155:0,-17.1587,-180.522,-4.21588,-167.787,-166.583 dDocent_Contig_6543 23 . T G 5047.02 . AB=0.461741;ABP=7.82879;AC=4;AF=0.5;AN=8;AO=175;CIGAR=1X;DP=379;DPB=379;DPRA=0;EPP=383.018;EPPR=445.991;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6948;QR=8103;RO=204;RPL=0;RPP=383.018;RPPR=445.991;RPR=175;RUN=1;SAF=175;SAP=383.018;SAR=0;SRF=204;SRP=445.991;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:129:73,56:73:2945:56:2212:-160.417,0,-226.3 0/1:110:50,60:50:2002:60:2407:-183.661,0,-147.252 0/1:70:46,24:46:1845:24:938:-63.6489,0,-145.181 0/1:70:35,35:35:1311:35:1391:-104.373,0,-97.1727 dDocent_Contig_6544 158 . C T 148.188 . AB=0.154762;ABP=89.9726;AC=3;AF=0.375;AN=8;AO=13;CIGAR=1X;DP=94;DPB=94;DPRA=2.8;EPP=31.2394;EPPR=178.9;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=493;QR=3063;RO=81;RPL=13;RPP=31.2394;RPPR=178.9;RPR=0;RUN=1;SAF=0;SAP=31.2394;SAR=13;SRF=0;SRP=178.9;SRR=81;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:15,5:15:566:5:191:-11.5381,0,-45.2524 0/1:37:32,5:32:1198:5:187:-6.05487,0,-96.9605 0/1:27:24,3:24:910:3:115:-2.59722,0,-74.0837 0/0:10:10,0:10:389:0:0:0,-3.0103,-35.3678 dDocent_Contig_6545 33 . T G 312.537 . AB=0.163636;ABP=111.11;AC=2;AF=0.25;AN=8;AO=21;CIGAR=1X;DP=249;DPB=249;DPRA=0.7173;EPP=48.6112;EPPR=498.106;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.995614;PAO=0;PQA=0;PQR=0;PRO=0;QA=847;QR=9052;RO=228;RPL=0;RPP=48.6112;RPPR=498.106;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=228;SRP=498.106;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:87:71,16:71:2851:16:650:-32.6439,0,-230.495 0/0:79:79,0:79:3111:0:0:0,-23.7814,-280.072 0/0:60:57,3:57:2274:3:115:0,-7.33859,-194.106 0/1:23:21,2:21:816:2:82:-0.855988,0,-66.8186 dDocent_Contig_6546 7 . A C 1631.51 . AB=0.458647;ABP=4.98585;AC=4;AF=0.5;AN=8;AO=61;CIGAR=1X;DP=133;DPB=133;DPRA=0;EPP=135.47;EPPR=157.185;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2323;QR=2688;RO=71;RPL=0;RPP=135.47;RPPR=157.185;RPR=61;RUN=1;SAF=61;SAP=135.47;SAR=0;SRF=71;SRP=157.185;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:41:27,14:27:1030:14:535:-36.1527,0,-80.6661 0/1:40:12,28:12:460:28:1081:-85.554,0,-29.709 0/1:37:25,11:25:948:11:424:-27.5528,0,-74.6865 0/1:15:7,8:7:250:8:283:-21.2899,0,-18.3253 dDocent_Contig_6547 16 . T G 2476.87 . AB=0.39207;ABP=25.9782;AC=4;AF=0.5;AN=8;AO=89;CIGAR=1X7M;DP=227;DPB=225.75;DPRA=0;EPP=196.271;EPPR=241.872;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3504;QR=4359;RO=110;RPL=0;RPP=196.271;RPPR=241.872;RPR=89;RUN=1;SAF=89;SAP=196.271;SAR=0;SRF=110;SRP=241.872;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:92:20,10,0,61:20:785:10,0,61:405,0,2421:-193.263,-165.887,-227.433,-199.284,-230.443,-263.84,0,-31.155,-64.5567,-46.1939 0|1:69:56,0,4,9:56:2223:0,4,9:0,160,369:-13.6059,-30.4636,-213.45,-17.2863,-200.27,-199.066,0,-182.992,-169.811,-180.282 0|1:31:16,0,5,10:16:627:0,5,10:0,202,386:-26.8657,-31.6822,-83.2381,-15.0228,-66.5824,-65.0773,0,-51.5468,-34.8905,-48.5365 0|1:35:18,0,5,9:18:724:0,5,9:0,201,328:-21.3494,-26.7679,-86.4492,-10.1924,-69.8827,-68.3775,0,-59.6776,-43.1122,-56.9683 dDocent_Contig_6548 19 . G T 1821.46 . AB=0.152;ABP=265.984;AC=0;AF=0;AN=8;AO=38;CIGAR=2X3M1X2M1X;DP=370;DPB=372;DPRA=0;EPP=85.5263;EPPR=413.419;GTI=0;LEN=1;MEANALT=5;MQM=60;MQMR=59.5767;NS=4;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=0.989418;PAO=0;PQA=0;PQR=0;PRO=0;QA=1467;QR=7342;RO=189;RPL=0;RPP=85.5263;RPPR=413.419;RPR=38;RUN=1;SAF=38;SAP=85.5263;SAR=0;SRF=189;SRP=413.419;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:74:38,1,22,0,12:38:1469:1,22,0,12:40,832,0,458:-56.7524,-64.8958,-185.252,0,-117.363,-114.035,-68.1915,-185.553,-120.658,-188.848,-31.0723,-148.434,-83.5404,-151.73,-148.117 0|0:106:39,9,24,20,13:39:1516:9,24,20,13:358,931,776,483:-64.7457,-47.0066,-166.22,0,-92.4436,-114.698,-12.73,-105.174,-58.1664,-128.632,-38.3211,-130.762,-83.7561,-96.4858,-156.327 0|0:144:87,5,21,18,12:87:3379:5,21,18,12:191,801,691,342:-39.5268,-50.0447,-326.201,0,-262.005,-271.352,-8.98465,-270.987,-220.954,-281.238,-40.2814,-302.259,-252.228,-261.21,-314.315 0|0:46:25,3,12,0,6:25:978:3,12,0,6:119,441,0,223:-28.5188,-26.2442,-105.767,0,-70.6274,-76.8119,-36.0445,-106.67,-80.4242,-116.467,-18.3776,-89.0027,-62.7592,-98.7995,-96.9933 dDocent_Contig_6549 45 . T C 1863.13 . AB=0.376344;ABP=27.7137;AC=4;AF=0.5;AN=8;AO=70;CIGAR=1X;DP=186;DPB=186;DPRA=0;EPP=155.013;EPPR=254.901;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.982759;PAO=0;PQA=0;PQR=0;PRO=0;QA=2760;QR=4610;RO=116;RPL=0;RPP=155.013;RPPR=254.901;RPR=70;RUN=1;SAF=70;SAP=155.013;SAR=0;SRF=116;SRP=254.901;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:52:28,24:28:1121:24:943:-69.5164,0,-85.52 0/1:53:42,11:42:1662:11:442:-24.1812,0,-133.846 0/1:63:38,25:38:1521:25:980:-69.5248,0,-118.164 0/1:18:8,10:8:306:10:395:-30.4885,0,-22.4738 dDocent_Contig_6550 136 . T A 334.585 . AB=0.192308;ABP=24.391;AC=1;AF=0.125;AN=8;AO=5;CIGAR=2M1X11M;DP=157;DPB=158.071;DPRA=0.611765;EPP=13.8677;EPPR=274.444;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=187;QR=4701;RO=125;RPL=0;RPP=13.8677;RPPR=274.444;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=274.444;SRR=125;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:46:24,9,13,0,0:24:904:9,13,0,0:311,426,0,0:-27.1785,-9.12544,-80.5238,0,-48.8365,-70.1851,-34.4032,-83.2331,-74.0985,-108.501,-34.4032,-83.2331,-74.0985,-108.501,-108.501 0|0:50:50,0,0,0,0:50:1890:0,0,0,0:0,0,0,0:0,-15.0515,-170.348,-15.0515,-170.348,-170.348,-15.0515,-170.348,-170.348,-170.348,-15.0515,-170.348,-170.348,-170.348,-170.348 0|0:35:32,0,0,3,0:32:1205:0,0,3,0:0,0,105,0:0,-9.63296,-108.395,-9.63296,-108.395,-108.395,-0.739888,-99.8541,-99.8541,-98.951,-9.63296,-108.395,-108.395,-99.8541,-108.395 0|1:26:19,0,2,0,5:19:702:0,2,0,5:0,51,0,187:-9.67776,-15.3973,-72.831,-11.4441,-68.8527,-68.2507,-15.3973,-72.831,-68.8527,-72.831,0,-57.5155,-53.5393,-57.5155,-56.0104 dDocent_Contig_6551 14 . C A 1023.73 . AB=0.184211;ABP=266.33;AC=4;AF=0.5;AN=8;AO=56;CIGAR=1X;DP=304;DPB=304;DPRA=0;EPP=124.613;EPPR=539.364;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2220;QR=9860;RO=247;RPL=0;RPP=124.613;RPPR=539.364;RPR=56;RUN=1;SAF=56;SAP=124.613;SAR=0;SRF=247;SRP=539.364;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:136:108,28:108:4251:28:1122:-60.3222,0,-341.607 0/1:79:70,9:70:2826:9:341:-7.25764,0,-230.648 0/1:50:43,7:43:1734:7:280:-10.5201,0,-141.223 0/1:39:26,12:26:1049:12:477:-31.6712,0,-83.1019 dDocent_Contig_6552 49 . T G 5555.38 . AB=0.267296;ABP=451.727;AC=4;AF=0.5;AN=8;AO=255;CIGAR=1X;DP=954;DPB=954;DPRA=0;EPP=240.501;EPPR=1503.55;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.772549;PAIREDR=0.992847;PAO=0;PQA=0;PQR=0;PRO=0;QA=9436;QR=26707;RO=699;RPL=44;RPP=240.501;RPPR=1503.55;RPR=211;RUN=1;SAF=255;SAP=556.736;SAR=0;SRF=699;SRP=1520.87;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:254:187,67:187:7102:67:2475:-146.503,0,-562.547 0/1:266:183,83:183:7044:83:3102:-199.275,0,-553.712 0/1:297:223,74:223:8470:74:2747:-158.025,0,-672.614 0/1:137:106,31:106:4091:31:1112:-59.1321,0,-327.012 dDocent_Contig_6553 98 . N A 1128.2 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=36;CIGAR=1X;DP=36;DPB=36;DPRA=0;EPP=81.1833;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1232;QR=0;RO=0;RPL=36;RPP=81.1833;RPPR=0;RPR=0;RUN=1;SAF=36;SAP=81.1833;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:21:0,21:0:0:21:714:-64.5777,-6.32163,0 1/1:7:0,7:0:0:7:241:-22.0265,-2.10721,0 1/1:5:0,5:0:0:5:173:-15.9102,-1.50515,0 1/1:3:0,3:0:0:3:104:-9.70309,-0.90309,0 dDocent_Contig_6554 73 . T C 3128.36 . AB=0.485477;ABP=3.4518;AC=4;AF=0.5;AN=8;AO=117;CIGAR=1X;DP=241;DPB=241;DPRA=0;EPP=257.073;EPPR=272.273;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4351;QR=4459;RO=124;RPL=117;RPP=257.073;RPPR=272.273;RPR=0;RUN=1;SAF=117;SAP=257.073;SAR=0;SRF=124;SRP=272.273;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:69:51,18:51:1812:18:673:-40.1241,0,-142.553 0/1:82:32,50:32:1170:50:1846:-141.698,0,-80.9031 0/1:61:26,35:26:923:35:1302:-99.0996,0,-65.0124 0/1:29:15,14:15:554:14:530:-39.3119,0,-41.4604 dDocent_Contig_6555 107 . N T 184.75 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=6;CIGAR=1X;DP=6;DPB=6;DPRA=0;EPP=16.0391;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=1.69407e-21;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=190;QR=0;RO=0;RPL=0;RPP=16.0391;RPPR=0;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:61:-5.79323,-0.60206,0 1/1:3:0,3:0:0:3:104:-9.70309,-0.90309,0 1/1:1:0,1:0:0:1:25:-2.49986,-0.30103,0 ./.:.:.:.:.:.:.:. dDocent_Contig_6556 18 . C T 1995.48 . AB=0.214797;ABP=299.041;AC=2;AF=0.25;AN=8;AO=107;CIGAR=1X;DP=687;DPB=687;DPRA=0;EPP=235.358;EPPR=1262.46;GTI=0;LEN=1;MEANALT=1;MQM=59.9533;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4345;QR=23173;RO=580;RPL=0;RPP=235.358;RPPR=1262.46;RPR=107;RUN=1;SAF=107;SAP=235.358;SAR=0;SRF=580;SRP=1262.46;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:188:119,69:119:4750:69:2798:-195.314,0,-370.805 0/1:231:210,21:210:8396:21:854:-7.63178,0,-685.616 0/0:151:142,9:142:5672:9:367:0,-12.0603,-476.909 0/0:117:109,8:109:4355:8:326:0,-5.51064,-362.188 dDocent_Contig_6557 10 . T C 10564 . AB=0.529771;ABP=8.05276;AC=4;AF=0.5;AN=8;AO=347;CIGAR=1X;DP=655;DPB=655;DPRA=0;EPP=756.511;EPPR=671.824;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=2.77556e-17;PAIRED=1;PAIREDR=0.996753;PAO=0;PQA=0;PQR=0;PRO=0;QA=14010;QR=12250;RO=308;RPL=0;RPP=756.511;RPPR=671.824;RPR=347;RUN=1;SAF=347;SAP=756.511;SAR=0;SRF=308;SRP=671.824;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:209:107,102:107:4274:102:4138:-309.45,0,-321.699 0/1:259:138,121:138:5451:121:4903:-363.16,0,-412.478 0/1:143:47,96:47:1883:96:3845:-302.989,0,-126.627 0/1:44:16,28:16:642:28:1124:-88.1982,0,-44.8674 dDocent_Contig_6558 9 . A T 368.459 . AB=0.326087;ABP=15.095;AC=1;AF=0.125;AN=8;AO=15;CIGAR=1X;DP=183;DPB=183;DPRA=1.0073;EPP=35.5824;EPPR=367.818;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=575;QR=6372;RO=168;RPL=0;RPP=35.5824;RPPR=367.818;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=168;SRP=367.818;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:46:31,15:31:1175:15:575:-38.2439,0,-92.2014 0/0:39:39,0:39:1484:0:0:0,-11.7402,-133.836 0/0:76:76,0:76:2885:0:0:0,-22.8783,-259.829 0/0:22:22,0:22:828:0:0:0,-6.62266,-74.8429 dDocent_Contig_6559 18 . T C 4863.1 . AB=0.634538;ABP=42.1578;AC=4;AF=0.5;AN=8;AO=158;CIGAR=1X;DP=249;DPB=249;DPRA=0;EPP=346.103;EPPR=198.443;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6306;QR=3610;RO=90;RPL=0;RPP=346.103;RPPR=198.443;RPR=158;RUN=1;SAF=158;SAP=346.103;SAR=0;SRF=90;SRP=198.443;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:50:16,34:16:643:34:1370:-108.502,0,-43.151 0/1:62:13,49:13:525:49:1933:-155.51,0,-28.9332 0/1:98:49,48:49:1956:48:1907:-142.512,0,-146.924 0/1:39:12,27:12:486:27:1096:-87.1837,0,-32.3506 dDocent_Contig_6560 18 . C T 397.581 . AB=0.183333;ABP=107.531;AC=2;AF=0.25;AN=8;AO=27;CIGAR=1X;DP=355;DPB=355;DPRA=0.742424;EPP=61.6401;EPPR=710.91;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.814815;PAIREDR=0.98773;PAO=0;PQA=0;PQR=0;PRO=0;QA=1030;QR=13009;RO=326;RPL=0;RPP=61.6401;RPPR=710.91;RPR=27;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=326;SRP=710.91;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:110:108,0:108:4298:0:0:0,-32.5112,-386.371 0/0:125:120,5:120:4824:5:157:0,-23.194,-419.606 0/1:72:62,10:62:2432:10:401:-14.7763,0,-197.358 0/1:48:36,12:36:1455:12:472:-28.3798,0,-116.747 dDocent_Contig_6561 1 . N G 104.466 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=112;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:112:-10.4461,-0.90309,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_6562 41 . C A 163.155 . AB=0.121212;ABP=167.516;AC=1;AF=0.125;AN=8;AO=16;CIGAR=1X;DP=368;DPB=368;DPRA=1.67797;EPP=37.7539;EPPR=767.369;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=638;QR=14074;RO=352;RPL=0;RPP=37.7539;RPPR=767.369;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=352;SRP=767.369;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:99:99,0:99:3968:0:0:0,-29.802,-357.11 0/1:132:116,16:116:4635:16:638:-18.0145,0,-377.323 0/0:98:98,0:98:3904:0:0:0,-29.5009,-351.347 0/0:39:39,0:39:1567:0:0:0,-11.7402,-141.262 dDocent_Contig_6563 144 . T C 72.5391 . AB=0.130435;ABP=84.8654;AC=3;AF=0.375;AN=8;AO=9;CIGAR=2X;DP=95;DPB=95;DPRA=0.884615;EPP=22.5536;EPPR=189.757;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=352;QR=3383;RO=86;RPL=0;RPP=22.5536;RPPR=189.757;RPR=9;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=189.757;SRR=86;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:26:26,0:26:1032:0:0:0,-7.82678,-93.1706 0|1:28:25,3:25:984:3:111:-1.9207,0,-80.432 0|1:20:16,4:16:614:4:161:-8.8543,0,-49.5663 0|1:21:19,2:19:753:2:80:-1.26995,0,-61.7707 dDocent_Contig_6564 98 . N C 773.008 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=25;CIGAR=1X;DP=25;DPB=25;DPRA=0;EPP=57.2971;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=843;QR=0;RO=0;RPL=25;RPP=57.2971;RPPR=0;RPR=0;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:89:-8.30375,-0.90309,0 1/1:9:0,9:0:0:9:311:-28.3245,-2.70927,0 ./.:.:.:.:.:.:.:. 1/1:13:0,13:0:0:13:443:-40.1953,-3.91339,0 dDocent_Contig_6565 46 . G A 292.508 . AB=0.232143;ABP=37.909;AC=1;AF=0.125;AN=8;AO=13;CIGAR=1X;DP=199;DPB=199;DPRA=1.17483;EPP=31.2394;EPPR=406.904;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=524;QR=7475;RO=186;RPL=0;RPP=31.2394;RPPR=406.904;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=186;SRP=406.904;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:56:43,13:43:1726:13:524:-30.6487,0,-138.698 0/0:79:79,0:79:3184:0:0:0,-23.7814,-286.616 0/0:48:48,0:48:1924:0:0:0,-14.4494,-173.363 0/0:16:16,0:16:641:0:0:0,-4.81648,-58.0245 dDocent_Contig_6566 8 . A T 570.917 . AB=0.372881;ABP=11.2913;AC=1;AF=0.125;AN=8;AO=24;CIGAR=1X;DP=235;DPB=235;DPRA=0.56705;EPP=55.1256;EPPR=461.191;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=925;QR=8009;RO=211;RPL=0;RPP=55.1256;RPPR=461.191;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=211;SRP=461.191;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:87:87,0:87:3305:0:0:0,-26.1896,-297.6 0/0:63:62,1:62:2357:1:39:0,-15.0683,-208.446 0/1:59:37,22:37:1382:22:847:-58.7906,0,-106.9 0/0:26:25,1:25:965:1:39:0,-3.93022,-83.2672 dDocent_Contig_6567 94 . C A 1140.64 . AB=0.1;ABP=30.8051;AC=0;AF=0;AN=8;AO=2;CIGAR=12M1X2M;DP=87;DPB=90;DPRA=0;EPP=7.35324;EPPR=87.6977;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=14;QR=1343;RO=39;RPL=2;RPP=7.35324;RPPR=87.6977;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:40:18,21,0:18:614:21,0:757,0:-56.5072,0,-43.6339,-61.9257,-49.9556,-111.742 0|0:17:7,10,0:7:240:10,0:361,0:-27.7167,0,-16.8175,-29.8239,-19.8278,-49.3015 0|0:20:8,10,2:8:278:10,2:356,14:-26.8431,0,-19.8136,-28.641,-22.2214,-50.6372 0|0:10:6,4,0:6:211:4,0:145,0:-10.3953,0,-16.3234,-12.2015,-17.5276,-29.3711 dDocent_Contig_6568 80 . C T 522.25 . AB=0.277228;ABP=46.5472;AC=3;AF=0.375;AN=8;AO=28;CIGAR=1X;DP=137;DPB=137;DPRA=0.935185;EPP=63.8115;EPPR=239.701;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=967;QR=3580;RO=109;RPL=28;RPP=63.8115;RPPR=239.701;RPR=0;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=109;SRP=239.701;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:43:30,13:30:968:13:449:-27.796,0,-74.4741 0/0:36:36,0:36:1214:0:0:0,-10.8371,-109.561 0/1:41:30,11:30:969:11:384:-22.5534,0,-75.1634 0/1:17:13,4:13:429:4:134:-7.27355,0,-33.8107 dDocent_Contig_6569 56 . C G 68.1329 . AB=0.0993377;ABP=213.557;AC=1;AF=0.125;AN=8;AO=30;CIGAR=1X;DP=391;DPB=391;DPRA=0;EPP=68.1545;EPPR=784.74;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1153;QR=14337;RO=360;RPL=30;RPP=68.1545;RPPR=784.74;RPR=0;RUN=1;SAF=30;SAP=68.1545;SAR=0;SRF=360;SRP=784.74;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:118:109,9:109:4323:9:326:0,-5.85192,-359.358 0/1:151:135,15:135:5356:15:597:-8.51226,0,-436.321 0/0:56:52,4:52:2074:4:156:0,-2.44273,-172.426 0/0:66:64,2:64:2584:2:74:0,-12.844,-225.656 dDocent_Contig_6570 19 . G A 197.026 . AB=0.296296;ABP=12.7417;AC=1;AF=0.125;AN=8;AO=15;CIGAR=1X;DP=391;DPB=391;DPRA=0.604317;EPP=35.5824;EPPR=819.484;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=605;QR=15037;RO=376;RPL=0;RPP=35.5824;RPPR=819.484;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=376;SRP=819.484;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:139:139,0:139:5584:0:0:0,-41.8432,-502.36 0/0:146:143,3:143:5712:3:121:0,-32.6704,-502.591 0/0:79:75,4:75:2975:4:160:0,-8.99794,-253.056 0/1:27:19,8:19:766:8:324:-21.4016,0,-61.1325 dDocent_Contig_6572 12 . C T 4988.61 . AB=0.526984;ABP=5.00254;AC=4;AF=0.5;AN=8;AO=166;CIGAR=1X;DP=315;DPB=315;DPRA=0;EPP=363.475;EPPR=326.56;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6669;QR=5870;RO=149;RPL=0;RPP=363.475;RPPR=326.56;RPR=166;RUN=1;SAF=166;SAP=363.475;SAR=0;SRF=149;SRP=326.56;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:122:48,74:48:1906:74:2984:-231.914,0,-135.008 0/1:83:35,48:35:1378:48:1933:-149.177,0,-99.2865 0/1:73:38,35:38:1475:35:1405:-104.724,0,-111.014 0/1:37:28,9:28:1111:9:347:-20.4449,0,-89.1348 dDocent_Contig_6573 19 . A C 74.1611 . AB=0.107527;ABP=127.438;AC=1;AF=0.125;AN=8;AO=11;CIGAR=1X;DP=195;DPB=195;DPRA=1.91045;EPP=26.8965;EPPR=402.561;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=446;QR=7342;RO=184;RPL=0;RPP=26.8965;RPPR=402.561;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=184;SRP=402.561;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:93:83,10:83:3315:10:405:-8.81405,0,-270.416 0/0:54:54,0:54:2151:0:0:0,-16.2556,-193.774 0/0:35:34,1:34:1356:1:41:0,-6.44148,-118.196 0/0:13:13,0:13:520:0:0:0,-3.91339,-47.148 dDocent_Contig_6574 93 . A C 660.702 . AB=0.172881;ABP=277.197;AC=3;AF=0.375;AN=8;AO=63;CIGAR=1X;DP=466;DPB=466;DPRA=0;EPP=139.813;EPPR=878.114;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2192;QR=14036;RO=403;RPL=63;RPP=139.813;RPPR=878.114;RPR=0;RUN=1;SAF=63;SAP=139.813;SAR=0;SRF=403;SRP=878.114;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:171:159,12:159:5534:12:422:0,-13.1611,-459.885 0/1:125:105,20:105:3643:20:709:-26.5075,0,-290.449 0/1:97:81,16:81:2809:16:538:-19.5373,0,-223.856 0/1:73:58,15:58:2050:15:523:-25.4234,0,-162.798 dDocent_Contig_6575 32 . G A 1743.83 . AB=0.380952;ABP=23.691;AC=4;AF=0.5;AN=8;AO=64;CIGAR=1X;DP=168;DPB=168;DPRA=0;EPP=141.985;EPPR=226.672;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2568;QR=4138;RO=103;RPL=0;RPP=141.985;RPPR=226.672;RPR=64;RUN=1;SAF=64;SAP=141.985;SAR=0;SRF=103;SRP=226.672;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:58:45,13:45:1817:13:524:-30.0477,0,-146.279 0/1:58:26,32:26:1046:32:1279:-97.9125,0,-76.9716 0/1:32:21,11:21:829:11:443:-30.5918,0,-65.2876 0/1:20:11,8:11:446:8:322:-23.2287,0,-34.3766 dDocent_Contig_6576 18 . T A 214.962 . AB=0.288889;ABP=20.4303;AC=1;AF=0.125;AN=8;AO=13;CIGAR=1X;DP=92;DPB=92;DPRA=2.87234;EPP=31.2394;EPPR=174.557;GTI=0;LEN=1;MEANALT=1;MQM=31.9231;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=514;QR=3196;RO=79;RPL=0;RPP=31.2394;RPPR=174.557;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=79;SRP=174.557;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:45:32,13:32:1300:13:514:-22.8941,0,-103.713 0/0:26:26,0:26:1059:0:0:0,-7.82678,-95.5967 0/0:9:9,0:9:356:0:0:0,-2.70927,-32.4008 0/0:12:12,0:12:481:0:0:0,-3.61236,-43.6371 dDocent_Contig_6577 10 . T A 315.488 . AB=0.202381;ABP=67.6375;AC=4;AF=0.5;AN=8;AO=17;CIGAR=1X;DP=84;DPB=84;DPRA=0;EPP=39.9253;EPPR=148.499;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.882353;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=689;QR=2668;RO=67;RPL=0;RPP=39.9253;RPPR=148.499;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=67;SRP=148.499;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:13,7:13:526:7:282:-19.732,0,-41.6668 0/1:21:18,3:18:689:3:123:-5.14316,0,-56.0044 0/1:33:30,3:30:1213:3:121:-1.346,0,-99.5083 0/1:10:6,4:6:240:4:163:-12.0481,0,-18.9654 dDocent_Contig_6578 12 . A C 360.462 . AB=0.0496689;ABP=534.978;AC=1;AF=0.125;AN=8;AO=15;CIGAR=1X3M1X1M;DP=341;DPB=341;DPRA=0;EPP=35.5824;EPPR=541.535;GTI=0;LEN=1;MEANALT=5;MQM=60;MQMR=60;NS=4;NUMALT=5;ODDS=0;PAIRED=0;PAIREDR=0.548387;PAO=0;PQA=0;PQR=0;PRO=0;QA=599;QR=9758;RO=248;RPL=0;RPP=35.5824;RPPR=541.535;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=248;SRP=541.535;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:93:71,0,3,8,0,11:71:2786:0,3,8,0,11:0,119,305,0,443:-15.1475,-36.5207,-265.635,-26.7242,-255.839,-254.935,-11.5071,-240.615,-230.819,-238.207,-36.5207,-265.635,-255.839,-240.615,-265.635,0,-229.121,-219.325,-204.102,-229.121,-225.81 0|1:132:95,1,10,8,5,10:95:3768:1,10,8,5,10:40,398,303,203,388:-4.17485,-29.4774,-339.335,0,-306.865,-307.15,-7.93659,-314.797,-285.321,-315.684,-16.0283,-322.893,-293.417,-301.35,-324.683,-0.902408,-307.765,-278.289,-286.221,-294.317,-308.049 0|0:77:52,4,2,1,7,9:52:2048:4,2,1,7,9:160,82,39,287,361:-14.0888,-16.563,-183.828,-22.9737,-178.263,-190.842,-26.5371,-181.826,-188.238,-194.705,-6.07063,-161.361,-167.773,-171.336,-172.434,0,-155.287,-161.699,-165.262,-144.797,-165.758 0|0:39:30,0,0,3,0,6:30:1156:0,0,3,0,6:0,0,118,0,232:-10.0188,-19.0497,-113.954,-19.0497,-113.954,-113.954,-9.34063,-104.246,-104.246,-103.343,-19.0497,-113.954,-113.954,-104.246,-113.954,0,-94.8996,-94.8996,-85.1921,-94.8996,-93.0935 dDocent_Contig_6579 19 . C A 3841.59 . AB=0.423208;ABP=18.0179;AC=4;AF=0.5;AN=8;AO=124;CIGAR=2X;DP=293;DPB=293;DPRA=0;EPP=272.273;EPPR=220.158;GTI=0;LEN=1;MEANALT=1.75;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4855;QR=3963;RO=100;RPL=0;RPP=272.273;RPPR=220.158;RPR=124;RUN=1;SAF=124;SAP=272.273;SAR=0;SRF=100;SRP=220.158;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:94:31,18,45:31:1219:18,45:701,1764:-135.724,-87.4472,-182.291,0,-42.656,-86.7182 0|1:75:20,16,39:20:795:16,39:629,1525:-119.348,-73.6293,-134.266,0,-13.7173,-53.7137 0|1:100:37,35,28:37:1481:35,28:1359,1090:-100.518,0,-111.47,-22.082,-32.4364,-135.659 0|1:24:12,0,12:12:468:0,12:0,476:-35.9659,-39.5783,-78.0355,0,-38.8501,-35.2378 dDocent_Contig_6581 209 . N G 777.132 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=21;CIGAR=1X;DP=21;DPB=21;DPRA=0;EPP=48.6112;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=840;QR=0;RO=0;RPL=21;RPP=48.6112;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=48.6112;SAR=21;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:6:0,6:0:0:6:239:-21.8824,-1.80618,0 1/1:2:0,2:0:0:2:80:-7.59157,-0.60206,0 1/1:5:0,5:0:0:5:205:-18.835,-1.50515,0 1/1:8:0,8:0:0:8:316:-28.8018,-2.40824,0 dDocent_Contig_6582 197 . C T 89.8788 . AB=0.162791;ABP=45.4803;AC=2;AF=0.25;AN=8;AO=8;CIGAR=1X;DP=68;DPB=68;DPRA=1.72727;EPP=20.3821;EPPR=133.299;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=308;QR=2323;RO=60;RPL=8;RPP=20.3821;RPPR=133.299;RPR=0;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=133.299;SRR=60;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:15,4:15:577:4:156:-8.69772,0,-46.5527 0/1:24:21,3:21:817:3:117:-3.68566,0,-66.6302 0/0:14:13,1:13:501:1:35:0,-0.715791,-41.9392 0/0:11:11,0:11:428:0:0:0,-3.31133,-38.8754 dDocent_Contig_6584 37 . T G 845.509 . AB=0.266667;ABP=66.8516;AC=4;AF=0.5;AN=8;AO=36;CIGAR=1X;DP=135;DPB=135;DPRA=0;EPP=81.1833;EPPR=217.986;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1456;QR=3733;RO=99;RPL=0;RPP=81.1833;RPPR=217.986;RPR=36;RUN=1;SAF=36;SAP=81.1833;SAR=0;SRF=99;SRP=217.986;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:51:30,21:30:1124:21:850:-61.4587,0,-86.1038 0/1:28:21,7:21:796:7:282:-17.3241,0,-63.5329 0/1:31:28,3:28:1069:3:122:-2.04056,0,-87.181 0/1:25:20,5:20:744:5:202:-11.0363,0,-59.7568 dDocent_Contig_6585 11 . G C 64.9145 . AB=0.12766;ABP=59.6072;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=154;DPB=154;DPRA=0.901235;EPP=18.2106;EPPR=322.217;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=280;QR=5856;RO=147;RPL=0;RPP=18.2106;RPPR=322.217;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=147;SRP=322.217;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:61:61,0:61:2433:0:0:0,-18.3628,-219.104 0/1:47:41,6:41:1662:6:244:-8.19042,0,-135.651 0/0:20:20,0:20:792:0:0:0,-6.0206,-71.5954 0/0:26:25,1:25:969:1:36:0,-4.2285,-83.8981 dDocent_Contig_6586 136 . N G 109.108 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=117;QR=0;RO=0;RPL=3;RPP=9.52472;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:117:-10.9102,-0.90309,0 ./.:.:.:.:.:.:.:. dDocent_Contig_6587 58 . G A 2969.04 . AB=0.299252;ABP=143.376;AC=4;AF=0.5;AN=8;AO=120;CIGAR=1X;DP=401;DPB=401;DPRA=0;EPP=263.587;EPPR=613.194;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=2.77556e-17;PAIRED=0.991667;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4710;QR=11074;RO=281;RPL=120;RPP=263.587;RPPR=613.194;RPR=0;RUN=1;SAF=120;SAP=263.587;SAR=0;SRF=281;SRP=613.194;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:128:104,24:104:4076:24:945:-46.8237,0,-328.284 0/1:138:102,36:102:4013:36:1421:-86.6088,0,-319.611 0/1:88:48,40:48:1907:40:1592:-117.03,0,-145.346 0/1:47:27,20:27:1078:20:752:-53.8397,0,-83.1612 dDocent_Contig_6588 29 . C A 121.994 . AB=0.139535;ABP=100.07;AC=2;AF=0.25;AN=8;AO=12;CIGAR=1X;DP=216;DPB=216;DPRA=0.661538;EPP=29.068;EPPR=445.991;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=436;QR=7991;RO=204;RPL=0;RPP=29.068;RPPR=445.991;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=204;SRP=445.991;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:85:85,0:85:3396:0:0:0,-25.5875,-305.689 0/0:45:45,0:45:1746:0:0:0,-13.5463,-157.361 0/1:73:62,11:62:2381:11:395:-13.8968,0,-192.471 0/1:13:12,1:12:468:1:41:-0.181177,0,-38.5518 dDocent_Contig_6589 33 . G T 159.596 . AB=0.204082;ABP=40.2799;AC=2;AF=0.25;AN=8;AO=10;CIGAR=1X;DP=150;DPB=150;DPRA=0.485149;EPP=24.725;EPPR=307.016;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.985714;PAO=0;PQA=0;PQR=0;PRO=0;QA=371;QR=5549;RO=140;RPL=0;RPP=24.725;RPPR=307.016;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=140;SRP=307.016;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:54:54,0:54:2138:0:0:0,-16.2556,-192.601 0/0:47:47,0:47:1848:0:0:0,-14.1484,-166.535 0/1:31:26,5:26:1046:5:184:-7.58418,0,-85.0988 0/1:18:13,5:13:517:5:187:-11.7733,0,-41.4565 dDocent_Contig_6590 20 . G A 7745.82 . AB=0.209156;ABP=821.511;AC=4;AF=0.5;AN=8;AO=233;CIGAR=9M1X;DP=1114;DPB=1302;DPRA=0;EPP=508.963;EPPR=1106.12;GTI=0;LEN=1;MEANALT=7.25;MQM=60;MQMR=60;NS=4;NUMALT=4;ODDS=0;PAIRED=0.991416;PAIREDR=1;PAO=0.5;PQA=20.5;PQR=0;PRO=0;QA=9173;QR=19990;RO=508;RPL=0;RPP=508.963;RPPR=1106.12;RPR=233;RUN=1;SAF=233;SAP=508.963;SAR=0;SRF=508;SRP=1106.12;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:341:152,95,22,32,36:152:5991:95,22,32,36:3633,804,1219,1430:-252.309,0,-464.286,-232.384,-427.202,-718.643,-198.089,-392.908,-625.289,-681.338,-180.34,-375.16,-607.542,-573.248,-662.387 0|1:275:152,9,26,17,68:152:5970:9,26,17,68:358,980,635,2669:-173.736,-190.014,-678.319,-139.2,-600.735,-622.385,-167.509,-629.044,-578.228,-653.403,0,-461.542,-410.726,-439.035,-470.549 0|1:325:137,37,67,0,78:137:5382:37,67,0,78:1390,2541,0,3082:-212.356,-139.754,-571.279,-45.2812,-374.101,-467.775,-253.597,-582.417,-487.944,-696.26,0,-328.825,-234.352,-442.669,-419.188 0|1:173:67,17,32,5,51:67:2647:17,32,5,51:620,1182,155,1992:-143.58,-113.115,-325.823,-67.1019,-234.295,-275.295,-151.317,-318.508,-272.496,-367.637,0,-167.204,-121.192,-205.406,-202.485 dDocent_Contig_6591 10 . T A 568.691 . AB=0.127551;ABP=475.328;AC=3;AF=0.375;AN=8;AO=50;CIGAR=1X;DP=497;DPB=497;DPRA=1.24444;EPP=111.584;EPPR=973.658;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1992;QR=17611;RO=447;RPL=0;RPP=111.584;RPPR=973.658;RPR=50;RUN=1;SAF=50;SAP=111.584;SAR=0;SRF=447;SRP=973.658;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:217:192,25:192:7621:25:996:-24.6107,0,-620.228 0/0:105:105,0:105:4123:0:0:0,-31.6081,-371.084 0/1:86:75,11:75:2957:11:444:-14.4272,0,-240.354 0/1:89:75,14:75:2910:14:552:-23.2291,0,-235.253 dDocent_Contig_6592 20 . G C 81.8208 . AB=0.15625;ABP=35.8538;AC=1;AF=0.125;AN=8;AO=6;CIGAR=4M2X2M1X1M2X3M;DP=115;DPB=115.2;DPRA=1.5;EPP=16.0391;EPPR=215.815;GTI=0;LEN=1;MEANALT=3.5;MQM=58.8333;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=0.166667;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=235;QR=3866;RO=98;RPL=0;RPP=16.0391;RPPR=215.815;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=98;SRP=215.815;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:28:26,1,1,0:26:1027:1,1,0:40,41,0:0,-4.53664,-88.7325,-4.43775,-85.6489,-88.6431,-7.82678,-89.0335,-88.9442,-92.3288 0|1:32:21,2,3,5:21:837:2,3,5:80,102,197:-9.88101,-9.60822,-77.9496,-7.94741,-70.287,-75.9742,0,-62.3594,-60.6862,-67.445 0|0:37:34,0,1,1:34:1331:0,1,1:0,36,38:0,-10.235,-119.681,-7.30919,-116.744,-116.443,-7.12015,-116.564,-113.628,-116.263 0|0:18:17,0,1,0:17:671:0,1,0:0,40,0:0,-5.11751,-60.325,-1.42286,-57.0296,-56.7286,-5.11751,-60.325,-57.0296,-60.325 dDocent_Contig_6593 11 . G T 3649.73 . AB=0.248387;ABP=343.945;AC=4;AF=0.5;AN=8;AO=154;CIGAR=1X;DP=620;DPB=620;DPRA=0;EPP=337.417;EPPR=1014.92;GTI=0;LEN=1;MEANALT=1;MQM=59.6429;MQMR=59.8691;NS=4;NUMALT=1;ODDS=2.77556e-17;PAIRED=1;PAIREDR=0.630901;PAO=0;PQA=0;PQR=0;PRO=0;QA=6214;QR=18628;RO=466;RPL=0;RPP=337.417;RPPR=1014.92;RPR=154;RUN=1;SAF=154;SAP=337.417;SAR=0;SRF=466;SRP=1014.92;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:268:196,72:196:7846:72:2920:-181.57,0,-624.898 0/1:186:129,57:129:5136:57:2296:-150.249,0,-405.635 0/1:116:96,20:96:3862:20:793:-36.7665,0,-312.648 0/1:50:45,5:45:1784:5:205:-3.78351,0,-145.728 dDocent_Contig_6594 11 . G T 3269.74 . AB=0.389078;ABP=34.3225;AC=4;AF=0.5;AN=8;AO=114;CIGAR=1X2M;DP=293;DPB=293;DPRA=0;EPP=250.558;EPPR=324.388;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4596;QR=5810;RO=148;RPL=0;RPP=250.558;RPPR=324.388;RPR=114;RUN=1;SAF=114;SAP=250.558;SAR=0;SRF=148;SRP=324.388;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:99:68,1,30:68:2703:1,30:31,1198:-78.2812,-96.2656,-318.501,0,-220.136,-213.592 0|1:85:28,10,47:28:1086:10,47:399,1907:-148.847,-124.418,-210.621,0,-56.3498,-75.063 0|1:69:30,14,25:30:1184:14,25:560,1005:-73.7875,-36.6892,-129.884,0,-51.2779,-89.8838 0|1:40:22,6,12:22:837:6,12:239,486:-33.4561,-20.3997,-87.2144,0,-48.9376,-65.0103 dDocent_Contig_6595 68 . A G 356.147 . AB=0.130435;ABP=466.856;AC=4;AF=0.5;AN=8;AO=51;CIGAR=1X;DP=391;DPB=391;DPRA=0;EPP=113.755;EPPR=741.311;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1771;QR=13215;RO=340;RPL=51;RPP=113.755;RPPR=741.311;RPR=0;RUN=1;SAF=51;SAP=113.755;SAR=0;SRF=340;SRP=741.311;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:128:113,15:113:4440:15:529:-9.39861,0,-361.049 0/1:141:119,22:119:4583:22:746:-24.9936,0,-370.019 0/1:72:65,7:65:2498:7:265:-2.53444,0,-203.317 0/1:50:43,7:43:1694:7:231:-6.05544,0,-137.647 dDocent_Contig_6596 17 . C A 296.375 . AB=0.153226;ABP=132.528;AC=1;AF=0.125;AN=8;AO=33;CIGAR=1X;DP=579;DPB=579;DPRA=0.903846;EPP=74.6689;EPPR=1188.63;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1313;QR=21600;RO=546;RPL=0;RPP=74.6689;RPPR=1188.63;RPR=33;RUN=1;SAF=33;SAP=74.6689;SAR=0;SRF=546;SRP=1188.63;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:124:105,19:105:4175:19:756:-31.0354,0,-338.382 0/0:156:156,0:156:6143:0:0:0,-46.9607,-552.63 0/0:179:170,9:170:6732:9:356:0,-21.4877,-573.216 0/0:120:115,5:115:4550:5:201:0,-17.6531,-390.972 dDocent_Contig_6597 16 . C T 1209.57 . AB=0.131673;ABP=334.133;AC=0;AF=0;AN=8;AO=37;CIGAR=1M6I1M1X2M1X2M1X1M;DP=281;DPB=303.8;DPRA=0;EPP=83.3548;EPPR=374.332;GTI=0;LEN=1;MEANALT=3.25;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=0.891892;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1391;QR=6691;RO=171;RPL=0;RPP=83.3548;RPPR=374.332;RPR=37;RUN=1;SAF=37;SAP=83.3548;SAR=0;SRF=171;SRP=374.332;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:71:45,10,0,15:45:1759:10,0,15:378,0,585:-34.5553,-17.1166,-158.729,-48.1016,-161.739,-192.722,0,-113.654,-144.637,-140.121 0|0:78:43,9,5,15:43:1699:9,5,15:344,196,553:-32.2696,-16.983,-154.1,-29.0924,-140.691,-167.412,0,-111.598,-123.706,-135.309 0|0:100:64,15,2,18:64:2482:15,2,18:556,77,697:-37.9842,-11.7645,-211.146,-50.9274,-209.339,-254.227,0,-158.418,-197.585,-198.489 0|0:32:19,3,0,10:19:751:3,0,10:113,0,359:-23.546,-20.0015,-80.9226,-29.2656,-81.8257,-91.0852,0,-52.559,-61.8165,-58.8062 dDocent_Contig_6598 11 . C A 142.83 . AB=0;ABP=0;AC=0;AF=0;AN=8;AO=2;CIGAR=1X1M1X;DP=118;DPB=118;DPRA=1.94595;EPP=7.35324;EPPR=233.186;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0.971698;PAO=0;PQA=0;PQR=0;PRO=0;QA=79;QR=4249;RO=106;RPL=0;RPP=7.35324;RPPR=233.186;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=106;SRP=233.186;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:36:32,2,2:32:1290:2,2:79,82:0,-3.13942,-108.86,-2.85738,-102.694,-108.592 0|0:25:25,0,0:25:991:0,0:0,0:0,-7.52575,-89.4877,-7.52575,-89.4877,-89.4877 0|0:45:37,0,8:37:1484:0,8:0,324:-15.982,-27.1201,-149.383,0,-122.666,-120.258 0|0:12:12,0,0:12:484:0,0:0,0:0,-3.61236,-43.9116,-3.61236,-43.9116,-43.9116 dDocent_Contig_6599 98 . N A 758.244 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=24;CIGAR=1X;DP=24;DPB=24;DPRA=0;EPP=55.1256;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=826;QR=0;RO=0;RPL=24;RPP=55.1256;RPPR=0;RPR=0;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:11:0,11:0:0:11:376:-34.1701,-3.31133,0 1/1:6:0,6:0:0:6:208:-19.0596,-1.80618,0 1/1:7:0,7:0:0:7:242:-22.1176,-2.10721,0 dDocent_Contig_6600 15 . A G 5873.64 . AB=0.286593;ABP=324.615;AC=4;AF=0.5;AN=8;AO=233;CIGAR=1X;DP=813;DPB=813;DPRA=0;EPP=508.963;EPPR=1262.46;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=9321;QR=23238;RO=580;RPL=0;RPP=508.963;RPPR=1262.46;RPR=233;RUN=1;SAF=233;SAP=508.963;SAR=0;SRF=580;SRP=1262.46;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:188:140,48:140:5582:48:1928:-117.122,0,-445.599 0/1:249:187,62:187:7520:62:2495:-149.724,0,-601.434 0/1:220:142,78:142:5698:78:3078:-210.871,0,-446.388 0/1:156:111,45:111:4438:45:1820:-117.045,0,-352.382 dDocent_Contig_6601 49 . G A 189.831 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=5;CIGAR=1X1M1X3M1X;DP=6;DPB=6;DPRA=5;EPP=13.8677;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=200;QR=0;RO=0;RPL=0;RPP=13.8677;RPPR=0;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:5:0,5:0:0:5:200:-18.3799,-1.50515,0 .:.:.:.:.:.:.:. 1|1:1:0,0:0:0:0:0:0,0,0 .:.:.:.:.:.:.:. dDocent_Contig_6602 16 . A G 11760.1 . AB=0.0872667;ABP=2698.9;AC=4;AF=0.5;AN=8;AO=159;CIGAR=1X3M2X;DP=1822;DPB=1822;DPRA=0;EPP=348.274;EPPR=1379.74;GTI=0;LEN=1;MEANALT=15.5;MQM=56.3648;MQMR=59.2853;NS=4;NUMALT=4;ODDS=0;PAIRED=0.691824;PAIREDR=0.868339;PAO=0;PQA=0;PQR=0;PRO=0;QA=5976;QR=24947;RO=638;RPL=0;RPP=348.274;RPPR=1388.41;RPR=159;RUN=1;SAF=159;SAP=348.274;SAR=0;SRF=637;SRP=1379.74;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:680:250,166,62,81,57:250:9764:166,62,81,57:6443,2302,3220,2187:-453.659,0,-745.387,-341.337,-607.778,-1118.03,-263.829,-530.271,-871.606,-1034.8,-349.455,-615.896,-957.231,-879.725,-1127.65 0|1:703:229,156,68,94,71:229:8942:156,68,94,71:6045,2557,3746,2801:-426.384,0,-686.934,-287.194,-525.768,-1000.62,-186.863,-425.438,-712.632,-892.462,-264.887,-503.462,-790.655,-690.326,-977.409 0|1:320:108,85,26,44,24:108:4235:85,26,44,24:3283,998,1746,954:-236.561,0,-322.304,-187.396,-266.214,-527.46,-125.349,-204.168,-391.564,-459.996,-190.533,-269.352,-456.748,-394.702,-531.2 0|1:119:51,25,3,15,17:51:2006:25,3,15,17:998,119,591,680:-66.8024,0,-157.477,-72.3599,-155.208,-236.459,-33.5386,-116.386,-188.745,-194.025,-26.14,-108.988,-181.347,-142.526,-186.025 dDocent_Contig_6603 92 . C A 2866.18 . AB=0.743243;ABP=79.0705;AC=4;AF=0.5;AN=8;AO=110;CIGAR=1X;DP=148;DPB=148;DPRA=0;EPP=241.872;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3748;QR=1307;RO=38;RPL=110;RPP=241.872;RPPR=85.5263;RPR=0;RUN=1;SAF=110;SAP=241.872;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:33:6,27:6:210:27:915:-72.7254,0,-9.30847 0/1:64:17,47:17:577:47:1596:-124.662,0,-32.9857 0/1:41:9,32:9:310:32:1097:-86.694,0,-15.892 0/1:10:6,4:6:210:4:140:-9.93463,0,-16.2322 dDocent_Contig_6604 53 . G A 4301.85 . AB=0.5;ABP=3.0103;AC=4;AF=0.5;AN=8;AO=148;CIGAR=1X;DP=296;DPB=296;DPRA=0;EPP=324.388;EPPR=315.761;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.952703;PAO=0;PQA=0;PQR=0;PRO=0;QA=5841;QR=5835;RO=148;RPL=148;RPP=324.388;RPPR=324.388;RPR=0;RUN=1;SAF=148;SAP=324.388;SAR=0;SRF=147;SRP=315.761;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:53:46,7:46:1830:7:281:-9.70738,0,-148.962 0/1:141:65,76:65:2562:76:2981:-225.939,0,-188.279 0/1:65:22,43:22:859:43:1712:-134.732,0,-58.0481 0/1:37:15,22:15:584:22:867:-67.2039,0,-41.7527 dDocent_Contig_6605 19 . G A 5560.26 . AB=0.614865;ABP=36.9322;AC=4;AF=0.5;AN=8;AO=182;CIGAR=1X;DP=296;DPB=296;DPRA=0;EPP=398.218;EPPR=250.558;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.950549;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7241;QR=4493;RO=114;RPL=0;RPP=398.218;RPPR=250.558;RPR=182;RUN=1;SAF=182;SAP=398.218;SAR=0;SRF=114;SRP=250.558;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:144:49,95:49:1942:95:3771:-296.047,0,-131.632 0/1:83:35,48:35:1414:48:1917:-147.744,0,-102.526 0/1:35:13,22:13:487:22:890:-69.8708,0,-33.6169 0/1:34:17,17:17:650:17:663:-49.7622,0,-48.5857 dDocent_Contig_6606 7 . A G 1107.87 . AB=0.156142;ABP=897.53;AC=3;AF=0.375;AN=8;AO=140;CIGAR=1X;DP=1004;DPB=1004;DPRA=0;EPP=307.016;EPPR=1866.13;GTI=0;LEN=1;MEANALT=1.75;MQM=59.1143;MQMR=59.9441;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.996503;PAO=0;PQA=0;PQR=0;PRO=0;QA=4325;QR=32642;RO=858;RPL=0;RPP=307.016;RPPR=1866.13;RPR=140;RUN=1;SAF=140;SAP=307.016;SAR=0;SRF=858;SRP=1866.13;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:340:264,72:264:10042:72:2233:-98.4775,0,-801.012 0/1:258:226,31:226:8640:31:936:-6.96389,0,-699.887 0/1:273:239,33:239:9049:33:1028:-10.7438,0,-732.074 0/0:133:129,4:129:4911:4:128:0,-28.2048,-430.191 dDocent_Contig_6607 11 . C T 418.961 . AB=0.177419;ABP=115.086;AC=2;AF=0.25;AN=8;AO=26;CIGAR=1X;DP=278;DPB=278;DPRA=0;EPP=59.4686;EPPR=550.221;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.5794;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1049;QR=10084;RO=252;RPL=0;RPP=59.4686;RPPR=550.221;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=252;SRP=550.221;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:82:80,2:80:3219:2:78:0,-17.2817,-282.36 0/1:99:79,20:79:3151:20:812:-43.5935,0,-252.267 0/0:72:70,2:70:2787:2:78:0,-14.2709,-243.529 0/1:25:23,2:23:927:2:81:-0.159984,0,-75.9825 dDocent_Contig_6608 89 . G A 148.815 . AB=0.368421;ABP=5.8675;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=132;DPB=132;DPRA=0.504425;EPP=18.2106;EPPR=274.444;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=244;QR=4204;RO=125;RPL=7;RPP=18.2106;RPPR=274.444;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=125;SRP=274.444;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:30:30,0:30:1018:0:0:0,-9.0309,-91.9272 0/0:54:54,0:54:1788:0:0:0,-16.2556,-161.195 0/0:29:29,0:29:997:0:0:0,-8.72987,-90.0412 0/1:19:12,7:12:401:7:244:-16.5805,0,-30.6922 dDocent_Contig_6609 114 . G T 707.951 . AB=0.242604;ABP=100.264;AC=3;AF=0.375;AN=8;AO=42;CIGAR=1X;DP=186;DPB=186;DPRA=0;EPP=94.2121;EPPR=315.702;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.7986;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=0.986111;PAO=0;PQA=0;PQR=0;PRO=0;QA=1436;QR=4787;RO=144;RPL=0;RPP=94.2121;RPPR=315.702;RPR=42;RUN=1;SAF=0;SAP=94.2121;SAR=42;SRF=0;SRP=315.702;SRR=144;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:41:26,15:26:836:15:524:-35.1487,0,-63.1922 0/1:83:66,17:66:2204:17:575:-27.0846,0,-173.638 0/1:45:36,9:36:1194:9:302:-13.9597,0,-93.8901 0/0:17:16,1:16:553:1:35:0,-1.61888,-46.5988 dDocent_Contig_6610 11 . C A 877.136 . AB=0.279412;ABP=60.4905;AC=3;AF=0.375;AN=8;AO=38;CIGAR=1X;DP=216;DPB=216;DPRA=0.566667;EPP=85.5263;EPPR=389.532;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1478;QR=6954;RO=178;RPL=0;RPP=85.5263;RPPR=389.532;RPR=38;RUN=1;SAF=38;SAP=85.5263;SAR=0;SRF=178;SRP=389.532;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:80:80,0:80:3155:0:0:0,-24.0824,-284.045 0/1:64:49,15:49:1888:15:600:-35.0725,0,-150.863 0/1:39:30,9:30:1165:9:351:-20.2068,0,-93.3888 0/1:33:19,14:19:746:14:527:-37.8322,0,-57.5242 dDocent_Contig_6611 51 . T C 118.215 . AB=0.102326;ABP=298.341;AC=2;AF=0.25;AN=8;AO=32;CIGAR=1X;DP=473;DPB=473;DPRA=0;EPP=72.4974;EPPR=960.63;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1279;QR=17583;RO=441;RPL=0;RPP=72.4974;RPPR=960.63;RPR=32;RUN=1;SAF=32;SAP=72.4974;SAR=0;SRF=441;SRP=960.63;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:135:123,12:123:4950:12:475:-2.45533,0,-404.737 0/0:148:145,3:145:5762:3:116:0,-33.7362,-507.565 0/0:110:103,7:103:4106:7:283:0,-7.2703,-343.658 0/1:80:70,10:70:2765:10:405:-12.7276,0,-224.882 dDocent_Contig_6612 97 . A G 801.587 . AB=0.26506;ABP=82.5961;AC=3;AF=0.375;AN=8;AO=44;CIGAR=1X;DP=321;DPB=321;DPRA=0.356989;EPP=98.5551;EPPR=604.508;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1495;QR=9566;RO=277;RPL=44;RPP=98.5551;RPPR=604.508;RPR=0;RUN=1;SAF=44;SAP=98.5551;SAR=0;SRF=277;SRP=604.508;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:155:155,0:155:5368:0:0:0,-46.6596,-483.285 0/1:80:55,25:55:1900:25:844:-52.1906,0,-147.2 0/1:37:24,13:24:837:13:447:-29.4214,0,-64.5117 0/1:49:43,6:43:1461:6:204:-3.94338,0,-117.033 dDocent_Contig_6613 98 . N T 242.542 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=8;CIGAR=1X;DP=8;DPB=8;DPRA=0;EPP=20.3821;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=261;QR=0;RO=0;RPL=8;RPP=20.3821;RPPR=0;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:1:0,1:0:0:1:7:-0.699998,-0.30103,0 ./.:.:.:.:.:.:.:. 1/1:7:0,7:0:0:7:254:-23.2109,-2.10721,0 dDocent_Contig_6614 97 . C T 1042.53 . AB=0.414414;ABP=10.0725;AC=4;AF=0.5;AN=8;AO=46;CIGAR=1X;DP=111;DPB=111;DPRA=0;EPP=102.898;EPPR=144.156;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.956522;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1597;QR=2282;RO=65;RPL=46;RPP=102.898;RPPR=144.156;RPR=0;RUN=1;SAF=46;SAP=102.898;SAR=0;SRF=65;SRP=144.156;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:13,3:13:458:3:104:-4.88654,0,-36.738 0/1:44:13,31:13:452:31:1074:-83.7237,0,-27.7652 0/1:35:29,6:29:1021:6:211:-8.79762,0,-81.6658 0/1:16:10,6:10:351:6:208:-14.2427,0,-27.1115 dDocent_Contig_6615 70 . C A 484.877 . AB=0.223214;ABP=77.5383;AC=3;AF=0.375;AN=8;AO=25;CIGAR=1X;DP=130;DPB=130;DPRA=2.07407;EPP=57.2971;EPPR=231.015;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.990476;PAO=0;PQA=0;PQR=0;PRO=0;QA=962;QR=4118;RO=105;RPL=25;RPP=57.2971;RPPR=231.015;RPR=0;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=105;SRP=231.015;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:31,5:31:1212:5:203:-7.81598,0,-98.5169 0/1:25:21,4:21:809:4:124:-3.93613,0,-65.5922 0/1:51:35,16:35:1388:16:635:-42.1323,0,-109.826 0/0:18:18,0:18:709:0:0:0,-5.41854,-64.1324 dDocent_Contig_6616 29 . T G 249.228 . AB=0.144;ABP=140.612;AC=2;AF=0.25;AN=8;AO=18;CIGAR=1X1M1X3M1X;DP=212;DPB=212.429;DPRA=1.27551;EPP=42.0968;EPPR=393.875;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=692;QR=7096;RO=180;RPL=0;RPP=42.0968;RPPR=393.875;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=180;SRP=393.875;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:44:36,7,0:36:1419:7,0:277,0:-12.2364,0,-114.938,-23.0735,-117.045,-139.844 0|1:81:64,11,3:64:2513:11,3:415,117:-14.7346,0,-203.371,-24.3816,-197.065,-230.168 0|0:49:46,0,2:46:1804:0,2:0,78:0,-13.8474,-162.192,-7.44899,-155.781,-155.178 0|0:38:34,0,4:34:1360:0,4:0,160:-3.34487,-13.5799,-125.61,0,-112.429,-111.225 dDocent_Contig_6617 26 . G C 328.802 . AB=0.22973;ABP=49.9611;AC=4;AF=0.5;AN=8;AO=17;CIGAR=1X3M2X;DP=74;DPB=74;DPRA=0;EPP=39.9253;EPPR=126.784;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=678;QR=2163;RO=57;RPL=0;RPP=39.9253;RPPR=126.784;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:25:22,3:22:833:3:120:-3.66156,0,-67.7656 0|1:13:11,2:11:421:2:81:-3.77234,0,-34.3295 0|1:15:9,6:9:346:6:243:-17.7327,0,-26.9832 0|1:21:15,6:15:563:6:234:-15.1073,0,-44.6843 dDocent_Contig_6618 98 . N A 376.822 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=12;CIGAR=1X;DP=12;DPB=12;DPRA=0;EPP=29.068;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=12.9229;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=415;QR=0;RO=0;RPL=12;RPP=29.068;RPPR=0;RPR=0;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:12:0,12:0:0:12:415:-37.6822,-3.61236,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_6619 32 . C A 1247.2 . AB=0.322148;ABP=43.9477;AC=3;AF=0.375;AN=8;AO=49;CIGAR=1X;DP=171;DPB=171;DPRA=0;EPP=109.412;EPPR=267.93;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1973;QR=4850;RO=122;RPL=0;RPP=109.412;RPPR=267.93;RPR=49;RUN=1;SAF=49;SAP=109.412;SAR=0;SRF=122;SRP=267.93;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:66:44,22:44:1741:22:885:-60.0917,0,-137.032 0/1:54:37,17:37:1464:17:688:-45.9933,0,-115.752 0/1:29:20,9:20:795:9:360:-24.033,0,-63.1368 0/0:22:21,1:21:850:1:40:0,-2.62698,-72.815 dDocent_Contig_6620 63 . A G 591.931 . AB=0.182796;ABP=165.567;AC=4;AF=0.5;AN=8;AO=34;CIGAR=1X;DP=186;DPB=186;DPRA=0;EPP=76.8404;EPPR=333.074;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1346;QR=5971;RO=152;RPL=34;RPP=76.8404;RPPR=333.074;RPR=0;RUN=1;SAF=34;SAP=76.8404;SAR=0;SRF=152;SRP=333.074;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:67:57,10:57:2255:10:402:-16.3693,0,-182.962 0/1:58:43,15:43:1664:15:590:-35.9734,0,-132.54 0/1:32:27,5:27:1059:5:191:-7.91982,0,-85.9764 0/1:29:25,4:25:993:4:163:-6.32856,0,-80.9377 dDocent_Contig_6621 8 . A T 1104.68 . AB=0.136024;ABP=772.825;AC=3;AF=0.375;AN=8;AO=92;CIGAR=1X2M1D1M;DP=988;DPB=969.6;DPRA=0;EPP=202.786;EPPR=1918.29;GTI=0;LEN=1;MEANALT=2;MQM=58.8587;MQMR=60;NS=4;NUMALT=1;ODDS=5.55112e-17;PAIRED=1;PAIREDR=0.995506;PAO=0;PQA=0;PQR=0;PRO=0;QA=3544;QR=34650;RO=890;RPL=0;RPP=202.786;RPPR=1935.62;RPR=92;RUN=1;SAF=92;SAP=202.786;SAR=0;SRF=888;SRP=1918.29;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:319:318,1:318:12362:1:39:0,-92.1455,-1108.05 0|1:246:202,39:202:7834:39:1496:-61.9766,0,-631.863 0|1:283:257,25:257:10028:25:969:-2.21182,0,-816.768 0|1:140:113,27:113:4426:27:1040:-51.6159,0,-356.21 dDocent_Contig_6622 21 . C T 2046.42 . AB=0.222717;ABP=302.862;AC=4;AF=0.5;AN=8;AO=100;CIGAR=1M1I6M1X;DP=449;DPB=461.75;DPRA=0;EPP=220.158;EPPR=754.34;GTI=0;LEN=1;MEANALT=1.75;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=2.77556e-17;PAIRED=0.92;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3842;QR=13640;RO=346;RPL=0;RPP=220.158;RPPR=754.34;RPR=100;RUN=1;SAF=100;SAP=220.158;SAR=0;SRF=346;SRP=754.34;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:123:86,36:86:3387:36:1374:-86.8715,0,-267.868 0|1:141:114,25:114:4495:25:971:-45.4886,0,-362.323 0|1:124:100,24:100:3950:24:921:-45.8681,0,-318.197 0|1:61:46,15:46:1808:15:576:-33.812,0,-144.586 dDocent_Contig_6623 24 . T C 197.086 . AB=0.147727;ABP=97.8642;AC=1;AF=0.125;AN=8;AO=15;CIGAR=1X;DP=392;DPB=392;DPRA=0.507692;EPP=35.5824;EPPR=821.655;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=607;QR=14940;RO=377;RPL=0;RPP=35.5824;RPPR=821.655;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=377;SRP=821.655;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:88:75,13:75:2939:13:525:-21.1066,0,-238.125 0/0:151:151,0:151:6040:0:0:0,-45.4555,-543.379 0/0:109:109,0:109:4282:0:0:0,-32.8123,-385.341 0/0:44:42,2:42:1679:2:82:0,-5.46564,-143.56 dDocent_Contig_6624 151 . G A 285.87 . AB=0.275862;ABP=15.6647;AC=3;AF=0.375;AN=8;AO=8;CIGAR=1X4M;DP=82;DPB=82;DPRA=0.805556;EPP=20.3821;EPPR=128.956;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=296;QR=2304;RO=58;RPL=0;RPP=20.3821;RPPR=128.956;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=128.956;SRR=58;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:36:33,3,0:33:1308:3,0:112,0:0,-0.391176,-107.548,-9.93399,-108.451,-117.619 0|1:10:8,2,0:8:315:2,0:79,0:-4.48733,0,-25.7054,-6.89557,-26.3075,-32.8087 0|1:29:11,10,8:11:439:10,8:375,296:-27.4026,0,-33.1621,-6.5142,-11.9827,-40.2741 0|1:7:6,1,0:6:242:1,0:41,0:-1.98736,0,-20.0503,-3.79354,-20.3513,-23.7364 dDocent_Contig_6625 10 . T A 6259.06 . AB=0.512019;ABP=3.53229;AC=4;AF=0.5;AN=8;AO=213;CIGAR=1X;DP=416;DPB=416;DPRA=0;EPP=465.534;EPPR=443.819;GTI=0;LEN=1;MEANALT=1;MQM=59.9953;MQMR=60;NS=4;NUMALT=1;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=8420;QR=8044;RO=203;RPL=0;RPP=465.534;RPPR=443.819;RPR=213;RUN=1;SAF=213;SAP=465.534;SAR=0;SRF=203;SRP=443.819;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:137:42,95:42:1672:95:3727:-294.212,0,-109.461 0/1:129:65,64:65:2584:64:2522:-188.294,0,-193.864 0/1:109:65,44:65:2585:44:1774:-127.053,0,-199.969 0/1:41:31,10:31:1203:10:397:-23.7448,0,-96.2032 dDocent_Contig_6626 75 . G C 300.724 . AB=0.217949;ABP=56.9074;AC=1;AF=0.125;AN=8;AO=27;CIGAR=1X;DP=355;DPB=355;DPRA=2.31776;EPP=61.6401;EPPR=715.253;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=979;QR=12280;RO=328;RPL=27;RPP=61.6401;RPPR=715.253;RPR=0;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=328;SRP=715.253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:78:61,17:61:2318:17:607:-31.4703,0,-185.356 0/0:170:160,10:160:6026:10:372:0,-17.3487,-508.477 0/0:67:67,0:67:2496:0:0:0,-20.169,-224.85 0/0:40:40,0:40:1440:0:0:0,-12.0412,-129.868 dDocent_Contig_6627 25 . G A 362.208 . AB=0.216867;ABP=60.8029;AC=1;AF=0.125;AN=8;AO=18;CIGAR=1X;DP=302;DPB=302;DPRA=1.13699;EPP=42.0968;EPPR=619.708;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=692;QR=11353;RO=284;RPL=0;RPP=42.0968;RPPR=619.708;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=284;SRP=619.708;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:83:65,18:65:2632:18:692:-37.6187,0,-212.009 0/0:130:130,0:130:5164:0:0:0,-39.1339,-464.618 0/0:65:65,0:65:2610:0:0:0,-19.5669,-235.02 0/0:24:24,0:24:947:0:0:0,-7.22472,-85.5246 dDocent_Contig_6628 149 . C T 61.5346 . AB=0.230769;ABP=11.1951;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=81;DPB=81;DPRA=0.573529;EPP=9.52472;EPPR=172.385;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=123;QR=3121;RO=78;RPL=0;RPP=9.52472;RPPR=172.385;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=172.385;SRR=78;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:10,3:10:405:3:123:-7.5514,0,-32.8968 0/0:28:28,0:28:1113:0:0:0,-8.42884,-100.452 0/0:24:24,0:24:957:0:0:0,-7.22472,-86.4208 0/0:16:16,0:16:646:0:0:0,-4.81648,-58.4737 dDocent_Contig_6629 183 . A C 40.3188 . AB=0.106061;ABP=91.9749;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=255;DPB=255;DPRA=1.04762;EPP=18.2106;EPPR=541.535;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=277;QR=9931;RO=248;RPL=7;RPP=18.2106;RPPR=541.535;RPR=0;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=541.535;SRR=248;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:66:59,7:59:2357:7:277:-5.42978,0,-192.416 0/0:38:38,0:38:1505:0:0:0,-11.4391,-135.695 0/0:94:94,0:94:3790:0:0:0,-28.2968,-341.095 0/0:57:57,0:57:2279:0:0:0,-17.1587,-205.274 dDocent_Contig_6630 43 . G T 1531.98 . AB=0.303483;ABP=70.434;AC=3;AF=0.375;AN=8;AO=64;CIGAR=1X;DP=263;DPB=263;DPRA=0;EPP=141.985;EPPR=435.133;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2547;QR=7970;RO=199;RPL=0;RPP=141.985;RPPR=435.133;RPR=64;RUN=1;SAF=64;SAP=141.985;SAR=0;SRF=199;SRP=435.133;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:77:56,21:56:2243:21:834:-52.1925,0,-178.857 0/1:83:55,28:55:2205:28:1119:-76.009,0,-173.637 0/0:62:59,3:59:2355:3:123:0,-7.19907,-200.642 0/1:41:29,12:29:1167:12:471:-30.3949,0,-92.9662 dDocent_Contig_6632 129 . C A 249.545 . AB=0.341463;ABP=11.961;AC=1;AF=0.125;AN=8;AO=19;CIGAR=1X;DP=141;DPB=141;DPRA=0.903509;EPP=44.2683;EPPR=267.93;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=570;QR=4034;RO=122;RPL=0;RPP=44.2683;RPPR=267.93;RPR=19;RUN=1;SAF=0;SAP=44.2683;SAR=19;SRF=0;SRP=267.93;SRR=122;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:38:38,0:38:1263:0:0:0,-11.4391,-113.964 0/0:45:41,4:41:1345:4:105:0,-3.83644,-111.628 0/1:41:27,14:27:903:14:430:-26.6535,0,-69.2366 0/0:17:16,1:16:523:1:35:0,-1.61888,-43.8845 dDocent_Contig_6633 16 . G A 16293.5 . AB=0.575107;ABP=48.6765;AC=4;AF=0.5;AN=8;AO=536;CIGAR=1X;DP=932;DPB=932;DPRA=0;EPP=1166.92;EPPR=862.913;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=5.55112e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=21310;QR=15801;RO=396;RPL=0;RPP=1166.92;RPPR=862.913;RPR=536;RUN=1;SAF=536;SAP=1166.92;SAR=0;SRF=396;SRP=862.913;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:258:121,137:121:4801:137:5456:-413.201,0,-354.328 0/1:373:160,213:160:6422:213:8440:-646.845,0,-465.412 0/1:206:70,136:70:2819:136:5413:-425.013,0,-191.797 0/1:95:45,50:45:1759:50:2001:-151.686,0,-129.925 dDocent_Contig_6634 61 . T G 1532.08 . AB=0.314433;ABP=61.0356;AC=4;AF=0.5;AN=8;AO=61;CIGAR=1X;DP=194;DPB=194;DPRA=0;EPP=135.47;EPPR=289.645;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2416;QR=5164;RO=132;RPL=61;RPP=135.47;RPPR=289.645;RPR=0;RUN=1;SAF=61;SAP=135.47;SAR=0;SRF=132;SRP=289.645;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:69:42,26:42:1688:26:1019:-71.1239,0,-131.267 0/1:60:42,18:42:1616:18:722:-47.2459,0,-127.615 0/1:33:19,14:19:725:14:553:-40.18,0,-55.6346 0/1:32:29,3:29:1135:3:122:-1.73953,0,-92.8042 dDocent_Contig_6635 18 . C A 2702.4 . AB=0.135593;ABP=275.217;AC=2;AF=0.25;AN=8;AO=32;CIGAR=5M1X2M;DP=236;DPB=225.375;DPRA=0;EPP=72.4974;EPPR=235.358;GTI=0;LEN=1;MEANALT=3.25;MQM=60;MQMR=60;NS=4;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1273;QR=4194;RO=107;RPL=0;RPP=72.4974;RPPR=235.358;RPR=32;RUN=1;SAF=32;SAP=72.4974;SAR=0;SRF=107;SRP=235.358;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:70:16,0,0,50,4:16:614:0,0,50,4:0,0,1881,162:-149.243,-154.06,-204.454,-154.06,-204.454,-204.454,0,-50.3768,-50.3768,-35.3253,-140.699,-191.095,-191.095,-37.0142,-189.89 0|1:78:41,4,4,10,19:41:1618:4,4,10,19:159,156,380,754:-49.7285,-48.9793,-180.906,-49.2478,-169.287,-181.174,-30.9137,-150.951,-151.219,-161.032,0,-120.044,-120.312,-101.976,-127.415 0|0:59:34,1,2,21,1:34:1331:1,2,21,1:40,74,823,41:-57.4398,-64.3794,-173.517,-61.6236,-167.766,-170.459,0,-106.146,-103.39,-103.12,-64.29,-170.433,-167.676,-106.057,-173.428 0|1:29:16,4,0,1,8:16:631:4,0,1,8:134,0,30,316:-21.2265,-15.2104,-65.9296,-26.0429,-67.1337,-77.9738,-23.6501,-64.7389,-75.5781,-75.2771,0,-41.1299,-51.9674,-49.5727,-49.5592 dDocent_Contig_6636 9 . A G 1563.61 . AB=0.273438;ABP=117.148;AC=4;AF=0.5;AN=8;AO=70;CIGAR=1X;DP=256;DPB=256;DPRA=0;EPP=155.013;EPPR=406.904;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.2473;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=0.994624;PAO=0;PQA=0;PQR=0;PRO=0;QA=2661;QR=7093;RO=186;RPL=0;RPP=155.013;RPPR=406.904;RPR=70;RUN=1;SAF=70;SAP=155.013;SAR=0;SRF=186;SRP=406.904;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:64:45,19:45:1722:19:727:-46.4949,0,-135.974 0/1:82:55,27:55:2091:27:1026:-67.9607,0,-163.137 0/1:76:57,19:57:2171:19:717:-41.98,0,-172.197 0/1:34:29,5:29:1109:5:191:-7.32308,0,-89.8795 dDocent_Contig_6637 31 . T C 169.933 . AB=0.216216;ABP=28.8919;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=258;DPB=258;DPRA=0.502262;EPP=20.3821;EPPR=545.878;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.996;PAO=0;PQA=0;PQR=0;PRO=0;QA=324;QR=10120;RO=250;RPL=0;RPP=20.3821;RPPR=545.878;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=250;SRP=545.878;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:37:29,8:29:1177:8:324:-18.3913,0,-95.0664 0/0:106:106,0:106:4294:0:0:0,-31.9092,-386.386 0/0:54:54,0:54:2189:0:0:0,-16.2556,-197.172 0/0:61:61,0:61:2460:0:0:0,-18.3628,-221.535 dDocent_Contig_6638 7 . A G 851.46 . AB=0.291925;ABP=63.5553;AC=4;AF=0.5;AN=8;AO=47;CIGAR=1X3M;DP=161;DPB=161;DPRA=0;EPP=105.07;EPPR=237.529;GTI=0;LEN=1;MEANALT=1.75;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1541;QR=4129;RO=108;RPL=0;RPP=105.07;RPPR=237.529;RPR=47;RUN=1;SAF=47;SAP=105.07;SAR=0;SRF=108;SRP=237.529;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:57:43,0,13:43:1634:0,13:0,432:-22.2063,-35.1506,-169.2,0,-134.265,-130.352 0|1:58:39,0,18:39:1505:0,18:0,580:-35.0357,-46.7759,-170.418,0,-123.682,-118.264 0|1:32:14,4,14:14:538:4,14:145,453:-32.291,-24.6598,-67.6523,0,-32.3511,-39.9688 0|1:14:12,0,2:12:452:0,2:0,76:-3.00025,-6.61261,-43.648,0,-37.4146,-36.8126 dDocent_Contig_6639 173 . A G 4752.18 . AB=0.370213;ABP=71.7767;AC=4;AF=0.5;AN=8;AO=174;CIGAR=1X;DP=470;DPB=470;DPRA=0;EPP=380.846;EPPR=645.766;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6925;QR=11866;RO=296;RPL=174;RPP=380.846;RPPR=645.766;RPR=0;RUN=1;SAF=0;SAP=380.846;SAR=174;SRF=0;SRP=645.766;SRR=296;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:136:91,45:91:3695:45:1817:-122.795,0,-291.603 0/1:157:106,51:106:4236:51:2030:-135.616,0,-333.939 0/1:103:68,35:68:2683:35:1365:-92.0914,0,-210.59 0/1:74:31,43:31:1252:43:1713:-132.113,0,-90.6699 dDocent_Contig_6640 15 . A C 132.996 . AB=0.127907;ABP=106.433;AC=1;AF=0.125;AN=8;AO=11;CIGAR=1X;DP=299;DPB=299;DPRA=1.21127;EPP=26.8965;EPPR=628.394;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=447;QR=11328;RO=288;RPL=0;RPP=26.8965;RPPR=628.394;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=288;SRP=628.394;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:86:75,11:75:2943:11:447:-14.6975,0,-239.101 0/0:112:112,0:112:4402:0:0:0,-33.7154,-396.165 0/0:61:61,0:61:2416:0:0:0,-18.3628,-217.604 0/0:40:40,0:40:1567:0:0:0,-12.0412,-141.273 dDocent_Contig_6641 179 . A C 63.6219 . AB=0.272727;ABP=7.94546;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=98;DPB=98;DPRA=0.37931;EPP=9.52472;EPPR=209.3;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.666667;PAIREDR=0.989474;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=3404;RO=95;RPL=3;RPP=9.52472;RPPR=209.3;RPR=0;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=209.3;SRR=95;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:38:38,0:38:1353:0:0:0,-11.4391,-122.046 0/0:40:40,0:40:1439:0:0:0,-12.0412,-129.785 0/1:11:8,3:8:297:3:122:-8.06116,0,-23.7724 0/0:9:9,0:9:315:0:0:0,-2.70927,-28.6833 dDocent_Contig_6642 107 . N T 288.814 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=9;CIGAR=1X;DP=9;DPB=9;DPRA=0;EPP=22.5536;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=310;QR=0;RO=0;RPL=0;RPP=22.5536;RPPR=0;RPR=9;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:4:0,4:0:0:4:141:-13.0371,-1.20412,0 1/1:5:0,5:0:0:5:169:-15.5431,-1.50515,0 ./.:.:.:.:.:.:.:. dDocent_Contig_6643 57 . T C 6162.77 . AB=0.558659;ABP=13.71;AC=4;AF=0.5;AN=8;AO=200;CIGAR=1X3M;DP=358;DPB=358;DPRA=0;EPP=437.305;EPPR=276.616;GTI=0;LEN=1;MEANALT=1.75;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=8023;QR=4957;RO=126;RPL=200;RPP=437.305;RPPR=276.616;RPR=0;RUN=1;SAF=200;SAP=437.305;SAR=0;SRF=126;SRP=276.616;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:97:25,23,49:25:987:23,49:888,1963:-154.195,-88.8012,-163.089,0,-8.29813,-66.4672 0|1:110:48,0,61:48:1891:0,61:0,2443:-186.977,-201.426,-356.99,0,-155.735,-137.372 0|1:86:34,0,52:34:1340:0,52:0,2086:-162.032,-172.267,-282.506,0,-110.635,-94.9812 0|1:65:19,8,38:19:739:8,38:319,1531:-120.471,-99.9207,-158.235,0,-34.4467,-49.2815 dDocent_Contig_6644 1 . N G 1088.25 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=30;CIGAR=1X;DP=30;DPB=30;DPRA=0;EPP=68.1545;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=0.533333;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1185;QR=0;RO=0;RPL=0;RPP=68.1545;RPPR=0;RPR=30;RUN=1;SAF=30;SAP=68.1545;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:10:0,10:0:0:10:382:-34.7302,-3.0103,0 1/1:3:0,3:0:0:3:122:-11.3725,-0.90309,0 1/1:11:0,11:0:0:11:439:-39.8659,-3.31133,0 1/1:6:0,6:0:0:6:242:-22.1573,-1.80618,0 dDocent_Contig_6645 183 . T G 25666.6 . AB=0.886719;ABP=335.551;AC=7;AF=0.875;AN=8;AO=772;CIGAR=1X;DP=839;DPB=839;DPRA=0;EPP=1679.39;EPPR=128.956;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.987047;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=30546;QR=2282;RO=58;RPL=772;RPP=1679.39;RPPR=128.956;RPR=0;RUN=1;SAF=0;SAP=1679.39;SAR=772;SRF=0;SRP=128.956;SRR=58;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:256:29,227:29:1156:227:9014:-733.642,0,-27.2554 1/1:204:13,191:13:491:191:7573:-636.632,-16.8869,0 1/1:219:9,201:9:354:201:7905:-678.823,-31.3888,0 1/1:160:7,153:7:281:153:6054:-518.962,-22.5028,0 dDocent_Contig_6646 1 . N G 74.9872 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=79;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:79:-7.49763,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_6647 16 . G A 1826.3 . AB=0.360825;ABP=35.6495;AC=4;AF=0.5;AN=8;AO=70;CIGAR=1X;DP=194;DPB=194;DPRA=0;EPP=155.013;EPPR=272.273;GTI=0;LEN=1;MEANALT=1;MQM=56.1143;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.983871;PAO=0;PQA=0;PQR=0;PRO=0;QA=2778;QR=4668;RO=124;RPL=0;RPP=155.013;RPPR=272.273;RPR=70;RUN=1;SAF=70;SAP=155.013;SAR=0;SRF=124;SRP=272.273;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:78:57,21:57:2150:21:837:-49.2083,0,-170.219 0/1:52:9,43:9:316:43:1704:-136.742,0,-13.1107 0/1:32:29,3:29:1088:3:114:-0.991273,0,-88.5849 0/1:32:29,3:29:1114:3:123:-1.83183,0,-90.9129 dDocent_Contig_6649 12 . A G 1312.31 . AB=0.231618;ABP=173.183;AC=4;AF=0.5;AN=8;AO=63;CIGAR=1X;DP=272;DPB=272;DPRA=0;EPP=139.813;EPPR=456.848;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2435;QR=7981;RO=209;RPL=0;RPP=139.813;RPPR=456.848;RPR=63;RUN=1;SAF=63;SAP=139.813;SAR=0;SRF=209;SRP=456.848;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:67:35,32:35:1308:32:1231:-90.912,0,-97.8365 0/1:111:96,15:96:3695:15:572:-18.4022,0,-299.222 0/1:60:51,9:51:1967:9:356:-14.3412,0,-159.204 0/1:34:27,7:27:1011:7:276:-14.9741,0,-81.0624 dDocent_Contig_6650 89 . T C 3270.12 . AB=0.547325;ABP=7.7375;AC=4;AF=0.5;AN=8;AO=133;CIGAR=3X;DP=243;DPB=243;DPRA=0;EPP=291.816;EPPR=241.872;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4515;QR=3722;RO=110;RPL=133;RPP=291.816;RPPR=241.872;RPR=0;RUN=1;SAF=133;SAP=291.816;SAR=0;SRF=110;SRP=241.872;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:33:22,11:22:746:11:362:-22.9643,0,-57.5224 0|1:83:17,66:17:575:66:2245:-177.335,0,-27.0851 0|1:71:46,25:46:1539:25:850:-55.4404,0,-117.426 0|1:56:25,31:25:862:31:1058:-78.6701,0,-61.0387 dDocent_Contig_6651 59 . C G 406.415 . AB=0.181102;ABP=115.192;AC=3;AF=0.375;AN=8;AO=23;CIGAR=1X;DP=136;DPB=136;DPRA=4.7037;EPP=52.9542;EPPR=248.387;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=919;QR=4494;RO=113;RPL=23;RPP=52.9542;RPPR=248.387;RPR=0;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=113;SRP=248.387;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:85:70,15:70:2790:15:595:-28.3006,0,-225.615 0/1:34:27,7:27:1081:7:284:-15.6988,0,-87.344 0/1:8:7,1:7:281:1:40:-1.58744,0,-23.2543 0/0:9:9,0:9:342:0:0:0,-2.70927,-31.1287 dDocent_Contig_6652 66 . T C 584.344 . AB=0.2;ABP=116.361;AC=1;AF=0.125;AN=8;AO=29;CIGAR=1X;DP=492;DPB=492;DPRA=1.2536;EPP=65.983;EPPR=1008.4;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1150;QR=17720;RO=463;RPL=29;RPP=65.983;RPPR=1008.4;RPR=0;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=463;SRP=1008.4;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:143:143,0:143:5488:0:0:0,-43.0473,-493.826 0/1:145:116,29:116:4485:29:1150:-60.1334,0,-359.996 0/0:137:137,0:137:5227:0:0:0,-41.2411,-470.34 0/0:67:67,0:67:2520:0:0:0,-20.169,-226.951 dDocent_Contig_6653 13 . C T 2787.78 . AB=0.349673;ABP=63.0735;AC=4;AF=0.5;AN=8;AO=107;CIGAR=1X;DP=306;DPB=306;DPRA=0;EPP=235.358;EPPR=435.133;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.149533;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4190;QR=7859;RO=199;RPL=0;RPP=235.358;RPPR=435.133;RPR=107;RUN=1;SAF=107;SAP=235.358;SAR=0;SRF=199;SRP=435.133;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:108:65,43:65:2562:43:1669:-117.949,0,-198.23 0/1:130:97,33:97:3835:33:1310:-79.0356,0,-306.049 0/1:44:24,20:24:947:20:792:-58.3578,0,-72.294 0/1:24:13,11:13:515:11:419:-30.8337,0,-39.4723 dDocent_Contig_6654 10 . G A 55.5141 . AB=0.2;ABP=14.7363;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=53;DPB=53;DPRA=1.18421;EPP=9.52472;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=123;QR=1975;RO=50;RPL=0;RPP=9.52472;RPPR=111.584;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:12,3:12:484:3:123:-6.94934,0,-39.3962 0/0:19:19,0:19:742:0:0:0,-5.71957,-67.1053 0/0:12:12,0:12:476:0:0:0,-3.61236,-43.1903 0/0:7:7,0:7:273:0:0:0,-2.10721,-24.9341 dDocent_Contig_6655 52 . C T 310.057 . AB=0.13369;ABP=220.959;AC=2;AF=0.25;AN=8;AO=25;CIGAR=1X;DP=326;DPB=326;DPRA=1.34532;EPP=57.2971;EPPR=656.623;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1000;QR=11901;RO=301;RPL=25;RPP=57.2971;RPPR=656.623;RPR=0;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=301;SRP=656.623;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:106:91,15:91:3569:15:603:-22.6985,0,-289.34 0/1:81:71,10:71:2814:10:397:-11.7052,0,-228.981 0/0:84:84,0:84:3348:0:0:0,-25.2865,-301.37 0/0:55:55,0:55:2170:0:0:0,-16.5566,-195.479 dDocent_Contig_6656 98 . N A 281.399 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=9;CIGAR=1X;DP=9;DPB=9;DPRA=0;EPP=22.5536;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=302;QR=0;RO=0;RPL=9;RPP=22.5536;RPPR=0;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:8:0,8:0:0:8:269:-24.5385,-2.40824,0 1/1:1:0,1:0:0:1:33:-3.29913,-0.30103,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_6657 31 . A C 232.45 . AB=0.255814;ABP=25.2805;AC=3;AF=0.375;AN=8;AO=12;CIGAR=1X;DP=66;DPB=66;DPRA=0;EPP=29.068;EPPR=120.27;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.666667;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=475;QR=2174;RO=54;RPL=0;RPP=29.068;RPPR=120.27;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:10,3:10:401:3:123:-7.5514,0,-32.5354 0/0:23:22,1:22:887:1:33:0,-3.62455,-76.8382 0/1:21:14,7:14:563:7:278:-19.0659,0,-44.692 0/1:9:8,1:8:323:1:41:-1.3853,0,-26.7288 dDocent_Contig_6658 1 . N G 247.099 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=7;CIGAR=1X;DP=7;DPB=7;DPRA=0;EPP=18.2106;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=263;QR=0;RO=0;RPL=0;RPP=18.2106;RPPR=0;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:5:0,5:0:0:5:186:-17.0991,-1.50515,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:77:-7.30914,-0.60206,0 dDocent_Contig_6659 51 . C T 30.6397 . AB=0.109375;ABP=87.8334;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=148;DPB=148;DPRA=2.28571;EPP=18.2106;EPPR=309.188;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=263;QR=5510;RO=141;RPL=7;RPP=18.2106;RPPR=309.188;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=141;SRP=309.188;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:18:18,0:18:704:0:0:0,-5.41854,-63.6911 0/0:41:41,0:41:1613:0:0:0,-12.3422,-145.42 0/1:64:57,7:57:2238:7:263:-4.76257,0,-182.34 0/0:25:25,0:25:955:0:0:0,-7.52575,-86.2538 dDocent_Contig_6660 10 . G T 72.6165 . AB=0.10989;ABP=123.3;AC=2;AF=0.25;AN=8;AO=10;CIGAR=1X;DP=161;DPB=161;DPRA=1.3;EPP=24.725;EPPR=330.903;GTI=0;LEN=1;MEANALT=1;MQM=57;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.675497;PAO=0;PQA=0;PQR=0;PRO=0;QA=394;QR=5989;RO=151;RPL=0;RPP=24.725;RPPR=330.903;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=151;SRP=330.903;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:54:47,7:47:1865:7:273:-8.65813,0,-151.807 0/1:37:34,3:34:1358:3:121:-0.129154,0,-111.339 0/0:42:42,0:42:1659:0:0:0,-12.6433,-149.535 0/0:28:28,0:28:1107:0:0:0,-8.42884,-99.9138 dDocent_Contig_6661 145 . A C 88.9226 . AB=0.170213;ABP=47.41;AC=2;AF=0.25;AN=8;AO=8;CIGAR=1X;DP=89;DPB=89;DPRA=1.11905;EPP=20.3821;EPPR=178.9;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=286;QR=3028;RO=81;RPL=0;RPP=20.3821;RPPR=178.9;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=178.9;SRR=81;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:21:21,0:21:761:0:0:0,-6.32163,-68.8069 0/1:27:23,4:23:906:4:154:-6.10548,0,-73.7257 0/0:21:21,0:21:781:0:0:0,-6.32163,-70.6021 0/1:20:16,4:16:580:4:132:-6.1847,0,-46.5017 dDocent_Contig_6662 60 . T G 6344.05 . AB=0.682119;ABP=90.013;AC=4;AF=0.5;AN=8;AO=206;CIGAR=1X;DP=302;DPB=302;DPRA=0;EPP=450.334;EPPR=211.472;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.936893;PAIREDR=0.802083;PAO=0;PQA=0;PQR=0;PRO=0;QA=8133;QR=3848;RO=96;RPL=206;RPP=450.334;RPPR=211.472;RPR=0;RUN=1;SAF=206;SAP=450.334;SAR=0;SRF=96;SRP=211.472;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:114:39,75:39:1583:75:2949:-231.195,0,-108.381 0/1:82:18,64:18:722:64:2513:-201.609,0,-40.6203 0/1:65:24,41:24:944:41:1638:-128.085,0,-65.6944 0/1:41:15,26:15:599:26:1033:-80.9142,0,-41.9039 dDocent_Contig_6663 35 . C A 289.838 . AB=0.195122;ABP=69.2137;AC=2;AF=0.25;AN=8;AO=16;CIGAR=1X;DP=169;DPB=169;DPRA=0.942529;EPP=37.7539;EPPR=335.246;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=626;QR=6137;RO=153;RPL=0;RPP=37.7539;RPPR=335.246;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=153;SRP=335.246;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:49:49,0:49:1968:0:0:0,-14.7505,-177.306 0/0:38:38,0:38:1523:0:0:0,-11.4391,-137.314 0/1:49:39,10:39:1570:10:394:-21.0678,0,-126.785 0/1:33:27,6:27:1076:6:232:-11.3139,0,-87.19 dDocent_Contig_6664 27 . T C 142.899 . AB=0.122642;ABP=134.118;AC=1;AF=0.125;AN=8;AO=13;CIGAR=1X;DP=313;DPB=313;DPRA=1.53623;EPP=31.2394;EPPR=654.452;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.973333;PAO=0;PQA=0;PQR=0;PRO=0;QA=525;QR=11764;RO=300;RPL=0;RPP=31.2394;RPPR=654.452;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=300;SRP=654.452;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:106:93,13:93:3647:13:525:-15.6879,0,-296.363 0/0:93:93,0:93:3611:0:0:0,-27.9958,-325.049 0/0:59:59,0:59:2325:0:0:0,-17.7608,-209.42 0/0:55:55,0:55:2181:0:0:0,-16.5566,-196.477 dDocent_Contig_6665 38 . C G 176.679 . AB=0.219512;ABP=31.0276;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X;DP=95;DPB=95;DPRA=2.27778;EPP=22.5536;EPPR=189.757;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=345;QR=3215;RO=86;RPL=0;RPP=22.5536;RPPR=189.757;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=86;SRP=189.757;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:41:32,9:32:1226:9:345:-19.0658,0,-98.2888 0/0:25:25,0:25:885:0:0:0,-7.52575,-79.9413 0/0:16:16,0:16:618:0:0:0,-4.81648,-55.9582 0/0:13:13,0:13:486:0:0:0,-3.91339,-44.0818 dDocent_Contig_6666 19 . A G 858.726 . AB=0.245161;ABP=90.4436;AC=3;AF=0.375;AN=8;AO=38;CIGAR=1X;DP=181;DPB=181;DPRA=1.98718;EPP=85.5263;EPPR=311.359;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1521;QR=5682;RO=142;RPL=0;RPP=85.5263;RPPR=311.359;RPR=38;RUN=1;SAF=38;SAP=85.5263;SAR=0;SRF=142;SRP=311.359;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:64:54,10:54:2166:10:404:-17.4545,0,-175.85 0/1:64:41,23:41:1631:23:920:-63.8383,0,-127.749 0/0:26:25,0:25:1014:0:0:0,-7.52575,-91.1427 0/1:27:22,5:22:871:5:197:-9.97768,0,-70.5704 dDocent_Contig_6667 7 . A C 1246.11 . AB=0.04;ABP=140.855;AC=0;AF=0;AN=8;AO=3;CIGAR=1M1X4M;DP=145;DPB=141.5;DPRA=0;EPP=9.52472;EPPR=191.928;GTI=0;LEN=1;MEANALT=2.5;MQM=56;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.333333;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=115;QR=3321;RO=87;RPL=0;RPP=9.52472;RPPR=191.928;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=87;SRP=191.928;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:54:33,19,0:33:1266:19,0:717,0:-48.7987,0,-98.1788,-58.7327,-103.898,-162.649 0|0:43:28,12,1:28:1061:12,1:457,37:-29.0585,0,-83.375,-34.4611,-83.9606,-121.147 0|0:32:21,9,2:21:799:9,2:338,78:-21.3587,0,-62.8171,-21.3096,-59.1572,-86.2438 0|0:16:5,11,0:5:195:11,0:414,0:-32.7928,0,-13.1077,-34.298,-16.419,-50.3316 dDocent_Contig_6668 9 . A C 101.689 . AB=0.170732;ABP=41.6201;AC=1;AF=0.125;AN=8;AO=21;CIGAR=1X;DP=374;DPB=374;DPRA=0;EPP=48.6112;EPPR=769.54;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=807;QR=13412;RO=353;RPL=0;RPP=48.6112;RPPR=769.54;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=353;SRP=769.54;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:150:146,4:146:5507:4:152:0,-31.1053,-481.577 0/0:87:84,3:84:3206:3:117:0,-15.2792,-277.786 0/0:96:89,7:89:3401:7:273:0,-3.96087,-281.291 0/1:41:34,7:34:1298:7:265:-11.8679,0,-104.767 dDocent_Contig_6669 89 . G A 322.687 . AB=0.3;ABP=23.8564;AC=4;AF=0.5;AN=8;AO=18;CIGAR=1X;DP=60;DPB=60;DPRA=0;EPP=42.0968;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=616;QR=1436;RO=42;RPL=18;RPP=42.0968;RPPR=94.2121;RPR=0;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:8,10:8:278:10:337:-25.2379,0,-19.9395 0/1:14:10,4:10:348:4:139:-8.63827,0,-27.4416 0/1:20:17,3:17:572:3:105:-3.77556,0,-45.7774 0/1:8:7,1:7:238:1:35:-1.09039,0,-19.3446 dDocent_Contig_6670 122 . C T 66.7052 . AB=0.285714;ABP=8.59409;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X1M1X2M1X;DP=133;DPB=133;DPRA=0.352941;EPP=11.6962;EPPR=276.616;GTI=0;LEN=1;MEANALT=2;MQM=54;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=131;QR=3973;RO=126;RPL=0;RPP=11.6962;RPPR=276.616;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=276.616;SRR=126;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:14:9,4:9:299:4:131:-8.06846,0,-23.225 0|0:41:40,0:40:1260:0:0:0,-12.0412,-113.612 0|0:48:47,0:47:1453:0:0:0,-14.1484,-130.976 0|0:30:30,0:30:961:0:0:0,-9.0309,-86.7889 dDocent_Contig_6672 147 . A G 65.5365 . AB=0.181818;ABP=22.3561;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=60;DPB=60;DPRA=1.73684;EPP=11.6962;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.946429;PAO=0;PQA=0;PQR=0;PRO=0;QA=161;QR=2159;RO=56;RPL=0;RPP=11.6962;RPPR=124.613;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=124.613;SRR=56;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:9:9,0:9:347:0:0:0,-2.70927,-31.585 0/0:12:12,0:12:458:0:0:0,-3.61236,-41.5598 0/1:22:18,4:18:709:4:161:-8.25261,0,-57.5158 0/0:17:17,0:17:645:0:0:0,-5.11751,-58.3657 dDocent_Contig_6674 209 . N G 74.9833 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=79;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:79:-7.49724,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_6676 26 . T C 344.72 . AB=0.777778;ABP=15.074;AC=2;AF=0.25;AN=8;AO=14;CIGAR=2X2M1X;DP=34;DPB=34;DPRA=1.125;EPP=33.4109;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1.5;MQM=45.5714;MQMR=56.1053;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=460;QR=598;RO=19;RPL=0;RPP=33.4109;RPPR=44.2683;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=0;SRP=44.2683;SRR=19;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:8:8,0:8:227:0:0:0,-2.40824,-20.7082 0|0:8:8,0:8:275:0:0:0,-2.40824,-24.9861 0|1:8:2,5:2:62:5:152:-11.4236,0,-3.43116 0|1:10:1,9:1:34:9:308:-24.8187,0,-0.37893 dDocent_Contig_6677 135 . T G 309.442 . AB=0.433333;ABP=4.16842;AC=1;AF=0.125;AN=8;AO=13;CIGAR=1X;DP=47;DPB=47;DPRA=5.29412;EPP=31.2394;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=456;QR=1213;RO=34;RPL=0;RPP=31.2394;RPPR=76.8404;RPR=13;RUN=1;SAF=0;SAP=31.2394;SAR=13;SRF=0;SRP=76.8404;SRR=34;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:17,13:17:607:13:456:-32.342,0,-45.9311 0/0:5:5,0:5:176:0:0:0,-1.50515,-16.1852 0/0:5:5,0:5:178:0:0:0,-1.50515,-16.3686 0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029 dDocent_Contig_6678 33 . A G 1072.99 . AB=0.246073;ABP=109.981;AC=2;AF=0.25;AN=8;AO=56;CIGAR=1X;DP=402;DPB=402;DPRA=0;EPP=124.613;EPPR=754.34;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2209;QR=13698;RO=346;RPL=0;RPP=124.613;RPPR=754.34;RPR=56;RUN=1;SAF=56;SAP=124.613;SAR=0;SRF=346;SRP=754.34;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:166:160,6:160:6355:6:230:0,-28.9043,-550.636 0/1:128:97,31:97:3824:31:1220:-71.5489,0,-305.64 0/1:63:47,16:47:1856:16:642:-39.1484,0,-148.29 0/0:45:42,3:42:1663:3:117:0,-2.63706,-138.996 dDocent_Contig_6680 89 . T C 886.447 . AB=0.262857;ABP=88.4919;AC=2;AF=0.25;AN=8;AO=49;CIGAR=1X;DP=287;DPB=287;DPRA=1.05314;EPP=109.412;EPPR=519.821;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1709;QR=8069;RO=238;RPL=49;RPP=109.412;RPPR=519.821;RPR=0;RUN=1;SAF=49;SAP=109.412;SAR=0;SRF=238;SRP=519.821;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:66:41,25:41:1401:25:888:-60.371,0,-106.517 0/0:69:69,0:69:2356:0:0:0,-20.7711,-212.299 0/1:109:88,21:88:2969:21:713:-31.6717,0,-234.634 0/0:43:40,3:40:1343:3:108:0,-2.86912,-111.086 dDocent_Contig_6681 10 . G T 3162.36 . AB=0.37013;ABP=48.1318;AC=3;AF=0.375;AN=8;AO=119;CIGAR=1X;DP=366;DPB=366;DPRA=0;EPP=261.416;EPPR=539.364;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.983806;PAO=0;PQA=0;PQR=0;PRO=0;QA=4785;QR=9857;RO=247;RPL=0;RPP=261.416;RPPR=539.364;RPR=119;RUN=1;SAF=119;SAP=261.416;SAR=0;SRF=247;SRP=539.364;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:74:47,27:47:1883:27:1097:-76.7364,0,-147.394 0/1:117:64,53:64:2552:53:2129:-156.561,0,-194.597 0/1:117:83,34:83:3292:34:1370:-88.3361,0,-261.129 0/0:58:53,5:53:2130:5:189:0,-0.0898859,-174.503 dDocent_Contig_6682 21 . G T 334.229 . AB=0.136842;ABP=220.66;AC=2;AF=0.25;AN=8;AO=26;CIGAR=1X;DP=345;DPB=345;DPRA=1.22581;EPP=59.4686;EPPR=695.71;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.996865;PAO=0;PQA=0;PQR=0;PRO=0;QA=1037;QR=12725;RO=319;RPL=0;RPP=59.4686;RPPR=695.71;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=319;SRP=695.71;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:102:86,16:86:3411:16:646:-27.7692,0,-276.319 0/0:109:109,0:109:4347:0:0:0,-32.8123,-391.183 0/1:88:78,10:78:3123:10:391:-9.05165,0,-254.639 0/0:46:46,0:46:1844:0:0:0,-13.8474,-166.165 dDocent_Contig_6683 9 . A C 2819.89 . AB=0.28876;ABP=203.005;AC=4;AF=0.5;AN=8;AO=149;CIGAR=1X;DP=516;DPB=516;DPRA=0;EPP=326.56;EPPR=789.083;GTI=0;LEN=1;MEANALT=1.75;MQM=41.8456;MQMR=56.9282;NS=4;NUMALT=1;ODDS=2.77556e-17;PAIRED=0.563758;PAIREDR=0.569061;PAO=0;PQA=0;PQR=0;PRO=0;QA=5661;QR=13791;RO=362;RPL=0;RPP=326.56;RPPR=789.083;RPR=149;RUN=1;SAF=149;SAP=326.56;SAR=0;SRF=362;SRP=789.083;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:123:97,25:97:3707:25:940:-37.6475,0,-294.622 0/1:187:125,61:125:4735:61:2318:-136.94,0,-363.287 0/1:135:92,40:92:3518:40:1517:-75.039,0,-271.151 0/1:71:48,23:48:1831:23:886:-39.761,0,-142.484 dDocent_Contig_6684 58 . A G 63.443 . AB=0.166667;ABP=26.1727;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=110;DPB=110;DPRA=0.774194;EPP=13.8677;EPPR=231.015;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=203;QR=4172;RO=105;RPL=5;RPP=13.8677;RPPR=231.015;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=105;SRP=231.015;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:20,4:20:777:4:162:-7.74224,0,-63.017 0/0:24:23,1:23:907:1:41:0,-3.13015,-77.8403 0/0:45:45,0:45:1813:0:0:0,-13.5463,-163.377 0/0:17:17,0:17:675:0:0:0,-5.11751,-61.0801 dDocent_Contig_6685 109 . G C 9043.44 . AB=0.473815;ABP=7.78646;AC=4;AF=0.5;AN=8;AO=380;CIGAR=1X;DP=802;DPB=802;DPRA=0;EPP=828.17;EPPR=917.2;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.997368;PAIREDR=0.995249;PAO=0;PQA=0;PQR=0;PRO=0;QA=12800;QR=14188;RO=421;RPL=0;RPP=828.17;RPPR=917.2;RPR=380;RUN=1;SAF=0;SAP=828.17;SAR=380;SRF=0;SRP=917.2;SRR=421;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:200:140,60:140:4705:60:1978:-118.083,0,-363.431 0/1:160:97,63:97:3313:63:2135:-144.257,0,-250.24 0/1:253:110,143:110:3731:143:4885:-363.672,0,-259.847 0/1:189:74,114:74:2439:114:3802:-285.729,0,-163.099 dDocent_Contig_6686 169 . G C 3451.83 . AB=0.54185;ABP=6.46361;AC=4;AF=0.5;AN=8;AO=123;CIGAR=1X;DP=227;DPB=227;DPRA=0;EPP=270.101;EPPR=228.843;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4664;QR=3938;RO=104;RPL=123;RPP=270.101;RPPR=228.843;RPR=0;RUN=1;SAF=0;SAP=270.101;SAR=123;SRF=0;SRP=228.843;SRR=104;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:62:27,35:27:1010:35:1300:-98.6085,0,-72.5187 0/1:54:26,28:26:1003:28:1061:-79.5319,0,-74.3092 0/1:57:26,31:26:969:31:1196:-90.7716,0,-70.3398 0/1:54:25,29:25:956:29:1107:-83.6685,0,-70.085 dDocent_Contig_6687 34 . A G 311.538 . AB=0.1875;ABP=84.4405;AC=4;AF=0.5;AN=8;AO=18;CIGAR=1X;DP=96;DPB=96;DPRA=0;EPP=42.0968;EPPR=147.33;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.6538;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.961538;PAO=0;PQA=0;PQR=0;PRO=0;QA=727;QR=3035;RO=78;RPL=0;RPP=42.0968;RPPR=147.33;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=78;SRP=172.385;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:18,2:18:693:2:80:-1.57119,0,-56.644 0/1:27:22,5:22:871:5:203:-10.5252,0,-70.5714 0/1:28:25,3:25:983:3:118:-2.57388,0,-80.3308 0/1:21:13,8:13:488:8:326:-23.3882,0,-37.9273 dDocent_Contig_6688 50 . G A 1341.16 . AB=0.297297;ABP=69.0348;AC=4;AF=0.5;AN=8;AO=55;CIGAR=1X;DP=185;DPB=185;DPRA=0;EPP=122.441;EPPR=285.302;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2176;QR=5189;RO=130;RPL=55;RPP=122.441;RPPR=285.302;RPR=0;RUN=1;SAF=55;SAP=122.441;SAR=0;SRF=130;SRP=285.302;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:56:35,21:35:1402:21:822:-57.4272,0,-109.577 0/1:49:35,14:35:1415:14:553:-35.3612,0,-112.849 0/1:52:45,7:45:1799:7:279:-9.82729,0,-146.469 0/1:28:15,13:15:573:13:522:-38.898,0,-43.4721 dDocent_Contig_6689 10 . G A 740.405 . AB=0.276215;ABP=173.09;AC=4;AF=0.5;AN=8;AO=108;CIGAR=1X;DP=391;DPB=391;DPRA=0;EPP=237.529;EPPR=617.537;GTI=0;LEN=1;MEANALT=1;MQM=22.6111;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.111111;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4322;QR=11345;RO=283;RPL=0;RPP=237.529;RPPR=617.537;RPR=108;RUN=1;SAF=108;SAP=237.529;SAR=0;SRF=283;SRP=617.537;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:126:90,36:90:3623:36:1432:-44.7468,0,-288.157 0/1:120:90,30:90:3597:30:1202:-12.5617,0,-287.629 0/1:94:63,31:63:2531:31:1245:-21.483,0,-199.625 0/1:51:40,11:40:1594:11:443:-2.62167,0,-128.342 dDocent_Contig_6690 8 . A T 808.323 . AB=0.245161;ABP=90.4436;AC=2;AF=0.25;AN=8;AO=47;CIGAR=1X;DP=301;DPB=301;DPRA=0;EPP=105.07;EPPR=554.564;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1796;QR=9748;RO=254;RPL=0;RPP=105.07;RPPR=554.564;RPR=47;RUN=1;SAF=47;SAP=105.07;SAR=0;SRF=254;SRP=554.564;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:121:95,26:95:3642:26:987:-52.7162,0,-291.476 0/0:73:69,4:69:2659:4:154:0,-7.7416,-225.263 0/0:73:68,5:68:2615:5:195:0,-4.05099,-217.617 0/1:34:22,12:22:832:12:460:-31.514,0,-64.9661 dDocent_Contig_6692 13 . G A 71.9719 . AB=0.157895;ABP=41.6397;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=102;DPB=102;DPRA=1.78125;EPP=3.0103;EPPR=202.876;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.979167;PAO=0;PQA=0;PQR=0;PRO=0;QA=222;QR=3819;RO=96;RPL=0;RPP=16.0391;RPPR=211.472;RPR=6;RUN=1;SAF=3;SAP=3.0103;SAR=3;SRF=95;SRP=202.876;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:21:21,0:21:838:0:0:0,-6.32163,-75.7343 0/0:31:31,0:31:1214:0:0:0,-9.33193,-109.532 0/1:38:32,6:32:1285:6:222:-8.89616,0,-104.472 0/0:12:12,0:12:482:0:0:0,-3.61236,-43.7318 dDocent_Contig_6693 1 . N G 75.9287 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=80;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:80:-7.59179,-0.60206,0 dDocent_Contig_6695 40 . A C 2894.63 . AB=0.35473;ABP=57.2678;AC=4;AF=0.5;AN=8;AO=105;CIGAR=1M1X2M;DP=296;DPB=300.75;DPRA=0;EPP=231.015;EPPR=374.332;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4222;QR=6831;RO=171;RPL=0;RPP=231.015;RPPR=374.332;RPR=105;RUN=1;SAF=105;SAP=231.015;SAR=0;SRF=171;SRP=374.332;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:70:47,7,15:47:1876:7,15:268,612:-36.3672,-28.5296,-180.924,0,-132.535,-150.01 0|1:85:44,2,39:44:1747:2,39:81,1586:-117.577,-124.143,-267.35,0,-137.126,-132.066 0|1:86:50,10,26:50:1997:10,26:396,1023:-69.088,-51.5469,-213.017,0,-131.888,-156.652 0|1:55:30,0,25:30:1211:0,25:0,1001:-73.8286,-82.8595,-182.691,0,-100.233,-92.7072 dDocent_Contig_6696 14 . G T 2846.51 . AB=0.630872;ABP=25.1768;AC=4;AF=0.5;AN=8;AO=94;CIGAR=1X;DP=149;DPB=149;DPRA=0;EPP=207.129;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3730;QR=2212;RO=55;RPL=0;RPP=207.129;RPPR=122.441;RPR=94;RUN=1;SAF=94;SAP=207.129;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:51:15,36:15:606:36:1416:-112.339,0,-39.5261 0/1:37:14,23:14:565:23:912:-71.2382,0,-40.0539 0/1:47:15,32:15:607:32:1280:-101.314,0,-40.8202 0/1:14:11,3:11:434:3:122:-7.15807,0,-35.1949 dDocent_Contig_6697 86 . C G 2081.82 . AB=0.52795;ABP=4.10278;AC=4;AF=0.5;AN=8;AO=85;CIGAR=1X;DP=161;DPB=161;DPRA=0;EPP=187.585;EPPR=165.871;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2920;QR=2556;RO=75;RPL=85;RPP=187.585;RPPR=165.871;RPR=0;RUN=1;SAF=85;SAP=187.585;SAR=0;SRF=75;SRP=165.871;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:58:19,38:19:634:38:1314:-101.06,0,-39.8745 0/1:58:31,27:31:1050:27:902:-64.0231,0,-77.3395 0/1:34:17,17:17:596:17:596:-43.7337,0,-43.7337 0/1:11:8,3:8:276:3:108:-6.76384,0,-21.864 dDocent_Contig_6699 10 . G A 245.208 . AB=0.152381;ABP=113.218;AC=2;AF=0.25;AN=8;AO=23;CIGAR=1X;DP=237;DPB=237;DPRA=1.8018;EPP=52.9542;EPPR=467.705;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=914;QR=8576;RO=214;RPL=0;RPP=52.9542;RPPR=467.705;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=214;SRP=467.705;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:37:37,0:37:1488:0:0:0,-11.1381,-134.16 0/0:95:88,7:88:3527:7:270:0,-3.93754,-292.8 0/1:71:65,6:65:2609:6:243:-0.874467,0,-213.565 0/1:34:24,10:24:952:10:401:-26.2117,0,-75.7427 dDocent_Contig_6700 97 . T A 2827.22 . AB=0.404255;ABP=29.2066;AC=4;AF=0.5;AN=8;AO=133;CIGAR=1X;DP=329;DPB=329;DPRA=0;EPP=291.816;EPPR=428.619;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4311;QR=6566;RO=196;RPL=133;RPP=291.816;RPPR=428.619;RPR=0;RUN=1;SAF=133;SAP=291.816;SAR=0;SRF=196;SRP=428.619;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:106:66,40:66:2205:40:1280:-83.5748,0,-166.811 0/1:106:85,21:85:2837:21:673:-28.9614,0,-223.67 0/1:69:26,43:26:878:43:1428:-108.039,0,-58.5606 0/1:48:19,29:19:646:29:930:-69.5445,0,-44.0111 dDocent_Contig_6701 27 . C A 142.939 . AB=0.126214;ABP=128.007;AC=1;AF=0.125;AN=8;AO=16;CIGAR=2X;DP=244;DPB=244;DPRA=1.39216;EPP=37.7539;EPPR=498.106;GTI=0;LEN=1;MEANALT=1;MQM=58.0625;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.890351;PAO=0;PQA=0;PQR=0;PRO=0;QA=601;QR=8980;RO=228;RPL=0;RPP=37.7539;RPPR=498.106;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=228;SRP=498.106;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:103:90,13:90:3514:13:515:-15.6919,0,-285.305 0|0:39:36,3:36:1434:3:86:0,-3.72728,-121.295 0|0:75:75,0:75:2948:0:0:0,-22.5772,-265.429 0|0:27:27,0:27:1084:0:0:0,-8.12781,-97.8431 dDocent_Contig_6702 14 . T C 14224.6 . AB=0.621438;ABP=97.4148;AC=4;AF=0.5;AN=8;AO=458;CIGAR=1X;DP=737;DPB=737;DPRA=0;EPP=997.545;EPPR=583.074;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.233;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.949821;PAO=0;PQA=0;PQR=0;PRO=0;QA=18356;QR=11210;RO=279;RPL=0;RPP=997.545;RPPR=608.851;RPR=458;RUN=1;SAF=458;SAP=997.545;SAR=0;SRF=276;SRP=583.074;SRR=3;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:216:89,127:89:3575:127:5109:-394.643,0,-256.736 0/1:184:62,122:62:2486:122:4911:-386.474,0,-166.057 0/1:205:62,143:62:2498:143:5685:-449.763,0,-158.883 0/1:132:66,66:66:2651:66:2651:-198.973,0,-198.97 dDocent_Contig_6703 67 . A G 345.974 . AB=0.115789;ABP=490.243;AC=1;AF=0.125;AN=8;AO=72;CIGAR=1X;DP=1192;DPB=1192;DPRA=1.64345;EPP=159.356;EPPR=2435.06;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.7107;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.994643;PAO=0;PQA=0;PQR=0;PRO=0;QA=2792;QR=42932;RO=1120;RPL=72;RPP=159.356;RPPR=2435.06;RPR=0;RUN=1;SAF=72;SAP=159.356;SAR=0;SRF=1120;SRP=2435.06;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:362:338,24:338:12827:24:959:0,-22.3616,-1053.91 0/1:380:336,44:336:12926:44:1672:-36.2964,0,-1048.2 0/0:249:245,4:245:9478:4:161:0,-60.081,-834.523 0/0:201:201,0:201:7701:0:0:0,-60.507,-692.769 dDocent_Contig_6705 15 . C T 60.9537 . AB=0.111111;ABP=97.59;AC=1;AF=0.125;AN=8;AO=10;CIGAR=1X;DP=228;DPB=228;DPRA=1.56667;EPP=24.725;EPPR=476.391;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.344037;PAO=0;PQA=0;PQR=0;PRO=0;QA=401;QR=8649;RO=218;RPL=0;RPP=24.725;RPPR=476.391;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=218;SRP=476.391;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:72:64,8:64:2516:8:320:-7.49331,0,-204.901 0/0:65:64,1:64:2561:1:41:0,-15.4724,-226.525 0/0:51:50,1:50:1996:1:40:0,-11.3569,-175.835 0/0:40:40,0:40:1576:0:0:0,-12.0412,-142.077 dDocent_Contig_6706 16 . A G 833.192 . AB=0.21519;ABP=114.333;AC=3;AF=0.375;AN=8;AO=34;CIGAR=1M1D4M1X6M;DP=158;DPB=153.923;DPRA=0;EPP=76.8404;EPPR=226.672;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1316;QR=4044;RO=103;RPL=0;RPP=76.8404;RPPR=226.672;RPR=34;RUN=1;SAF=34;SAP=76.8404;SAR=0;SRF=103;SRP=226.672;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:59:39,15,5,0:39:1547:15,5,0:586,192,0:-36.4395,0,-122.84,-32.4241,-111.6,-158.268,-48.1797,-127.356,-159.773,-175.529 0|1:38:25,8,2,2:25:980:8,2,2:304,72,78:-17.4032,0,-78.1898,-19.06,-74.7277,-99.0518,-18.5155,-74.1865,-93.2422,-98.5111 0|0:40:28,4,8,0:28:1084:4,8,0:156,321,0:-18.0272,-13.6367,-101.461,0,-76.2138,-86.6289,-26.456,-102.665,-89.0371,-115.488 0|1:21:11,7,3,0:11:433:7,3,0:270,121,0:-18.8473,0,-33.5054,-12.1791,-25.6363,-46.901,-22.1586,-35.6126,-47.8041,-57.7801 dDocent_Contig_6707 107 . N C 258.241 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=8;CIGAR=1X;DP=8;DPB=8;DPRA=0;EPP=20.3821;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0.625;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=276;QR=0;RO=0;RPL=0;RPP=20.3821;RPPR=0;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:5:0,5:0:0:5:171:-15.7266,-1.50515,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:105:-9.79616,-0.90309,0 dDocent_Contig_6708 21 . T A 4652.54 . AB=0.321364;ABP=157.395;AC=4;AF=0.5;AN=8;AO=179;CIGAR=1X;DP=557;DPB=557;DPRA=0;EPP=391.704;EPPR=823.827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7105;QR=14906;RO=378;RPL=0;RPP=391.704;RPPR=823.827;RPR=179;RUN=1;SAF=179;SAP=391.704;SAR=0;SRF=378;SRP=823.827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:161:103,58:103:4030:58:2318:-160.312,0,-314.233 0/1:188:127,61:127:5017:61:2415:-160.913,0,-394.827 0/1:119:81,38:81:3184:38:1507:-100.059,0,-250.815 0/1:89:67,22:67:2675:22:865:-51.3676,0,-214.082 dDocent_Contig_6709 38 . A G 1827.52 . AB=0.0890411;ABP=217.183;AC=0;AF=0;AN=8;AO=13;CIGAR=5M8D1X;DP=217;DPB=215;DPRA=0;EPP=31.2394;EPPR=280.959;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=518;QR=5063;RO=128;RPL=0;RPP=31.2394;RPPR=280.959;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=128;SRP=280.959;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:71:41,0,30:41:1619:0,30:0,1089:-76.9367,-89.279,-222.519,0,-133.617,-124.586 0|0:65:30,6,29:30:1186:6,29:238,1080:-79.3431,-68.779,-164.587,0,-78.0101,-88.8713 0|0:54:40,6,8:40:1582:6,8:239,292:-11.7877,-4.13626,-132.55,0,-110.514,-127.784 0|0:27:17,1,9:17:676:1,9:41,333:-22.0824,-23.8118,-79.188,0,-52.2629,-52.9384 dDocent_Contig_6710 98 . N A 235.684 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=7;CIGAR=1X;DP=7;DPB=7;DPRA=0;EPP=18.2106;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=240;QR=0;RO=0;RPL=7;RPP=18.2106;RPPR=0;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1:0,1:0:0:1:35:-3.49863,-0.30103,0 1/1:1:0,1:0:0:1:34:-3.39891,-0.30103,0 1/1:4:0,4:0:0:4:137:-12.6681,-1.20412,0 1/1:1:0,1:0:0:1:34:-3.39891,-0.30103,0 dDocent_Contig_6711 65 . C T 436.457 . AB=0.174825;ABP=134.346;AC=3;AF=0.375;AN=8;AO=25;CIGAR=1X;DP=160;DPB=160;DPRA=2.80392;EPP=57.2971;EPPR=296.159;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1011;QR=5242;RO=135;RPL=25;RPP=57.2971;RPPR=296.159;RPR=0;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=135;SRP=296.159;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:57:46,11:46:1795:11:449:-23.6072,0,-144.602 0/1:49:39,10:39:1499:10:400:-21.6063,0,-120.393 0/1:37:33,4:33:1293:4:162:-3.82864,0,-105.493 0/0:17:17,0:17:655:0:0:0,-5.11751,-59.2646 dDocent_Contig_6713 21 . A G 36.5901 . AB=0.0983607;ABP=173.951;AC=2;AF=0.25;AN=8;AO=12;CIGAR=1X;DP=255;DPB=255;DPRA=0.917293;EPP=29.068;EPPR=530.678;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=478;QR=9752;RO=243;RPL=0;RPP=29.068;RPPR=530.678;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=243;SRP=530.678;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:97:88,9:88:3546:9:356:-3.20183,0,-289.958 0/0:75:75,0:75:3013:0:0:0,-22.5772,-271.252 0/0:58:58,0:58:2320:0:0:0,-17.4597,-208.956 0/1:25:22,3:22:873:3:122:-3.84674,0,-71.3523 dDocent_Contig_6714 116 . G T 169.229 . AB=0.151515;ABP=107.438;AC=1;AF=0.125;AN=8;AO=19;CIGAR=1X;DP=289;DPB=289;DPRA=2.5;EPP=44.2683;EPPR=589.308;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=674;QR=9551;RO=270;RPL=0;RPP=44.2683;RPPR=589.308;RPR=19;RUN=1;SAF=0;SAP=44.2683;SAR=19;SRF=0;SRP=589.308;SRR=270;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:99:84,15:84:3002:15:531:-18.3209,0,-240.603 0/0:89:87,2:87:3038:2:71:0,-20.0496,-266.896 0/0:67:65,2:65:2286:2:72:0,-13.3323,-199.155 0/0:34:34,0:34:1225:0:0:0,-10.235,-110.555 dDocent_Contig_6715 129 . T C 60.3623 . AB=0.235294;ABP=13.3567;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=39;DPB=39;DPRA=2.31818;EPP=11.6962;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=139;QR=1125;RO=35;RPL=0;RPP=11.6962;RPPR=79.0118;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=79.0118;SRR=35;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:6:6,0:6:182:0:0:0,-1.80618,-16.677 0/0:8:8,0:8:262:0:0:0,-2.40824,-23.9006 0/1:17:13,4:13:416:4:139:-7.73518,0,-32.6314 0/0:8:8,0:8:265:0:0:0,-2.40824,-24.1737 dDocent_Contig_6716 110 . G T 41.9968 . AB=0.133333;ABP=90.593;AC=3;AF=0.375;AN=8;AO=11;CIGAR=1X;DP=107;DPB=107;DPRA=0;EPP=26.8965;EPPR=211.472;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.363636;PAIREDR=0.989583;PAO=0;PQA=0;PQR=0;PRO=0;QA=380;QR=3277;RO=96;RPL=0;RPP=26.8965;RPPR=211.472;RPR=11;RUN=1;SAF=0;SAP=26.8965;SAR=11;SRF=0;SRP=211.472;SRR=96;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:37:32,5:32:1105:5:175:-4.95559,0,-88.6208 0/0:32:31,1:31:1039:1:35:0,-6.13433,-90.3132 0/1:24:21,3:21:724:3:101:-2.19888,0,-58.2562 0/1:14:12,2:12:409:2:69:-2.33824,0,-32.9228 dDocent_Contig_6717 21 . C A 79.4092 . AB=0.222222;ABP=15.074;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=251;DPB=251;DPRA=0.731034;EPP=16.0391;EPPR=535.021;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=244;QR=9789;RO=245;RPL=0;RPP=16.0391;RPPR=535.021;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=245;SRP=535.021;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:77:77,0:77:3110:0:0:0,-23.1793,-279.967 0/0:68:68,0:68:2698:0:0:0,-20.47,-242.936 0/0:88:86,2:86:3437:2:81:0,-18.8049,-301.689 0/1:18:14,4:14:544:4:163:-9.63989,0,-43.8784 dDocent_Contig_6718 9 . A G 2135.43 . AB=0.419689;ABP=13.8227;AC=4;AF=0.5;AN=8;AO=81;CIGAR=1X;DP=193;DPB=193;DPRA=0;EPP=178.9;EPPR=246.215;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.901235;PAIREDR=0.955357;PAO=0;PQA=0;PQR=0;PRO=0;QA=3086;QR=4254;RO=112;RPL=0;RPP=178.9;RPPR=246.215;RPR=81;RUN=1;SAF=81;SAP=178.9;SAR=0;SRF=112;SRP=246.215;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:57:31,26:31:1185:26:984:-71.7074,0,-89.7874 0/1:42:22,20:22:834:20:761:-56.1746,0,-62.7382 0/1:52:30,22:30:1132:22:842:-60.4478,0,-86.5271 0/1:42:29,13:29:1103:13:499:-32.6107,0,-86.9308 dDocent_Contig_6719 10 . C A 701.321 . AB=0.138365;ABP=183.625;AC=4;AF=0.5;AN=8;AO=22;CIGAR=1M1X;DP=235;DPB=251;DPRA=0;EPP=50.7827;EPPR=396.047;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=2.77556e-17;PAIRED=1;PAIREDR=0.81768;PAO=0;PQA=0;PQR=0;PRO=0;QA=884;QR=7048;RO=181;RPL=0;RPP=50.7827;RPPR=396.047;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=181;SRP=396.047;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:99:80,10,9:80:3112:10,9:392,358:-8.14652,0,-252.714,-2.75321,-226.25,-255.773 0|1:76:62,14,0:62:2410:14,0:565,0:-28.3152,0,-194.21,-46.979,-198.424,-245.003 0|1:33:24,6,3:24:947:6,3:237,122:-12.2698,0,-76.1045,-9.42742,-67.8462,-86.4454 0|1:27:15,2,10:15:579:2,10:79,404:-28.7984,-26.8147,-73.7492,0,-41.0377,-44.529 dDocent_Contig_6720 11 . T A 417.984 . AB=0.228916;ABP=55.989;AC=1;AF=0.125;AN=8;AO=20;CIGAR=1X;DP=304;DPB=304;DPRA=0.777778;EPP=46.4397;EPPR=619.708;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=794;QR=11408;RO=284;RPL=0;RPP=46.4397;RPPR=619.708;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=284;SRP=619.708;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:83:64,19:64:2593:19:754:-43.1964,0,-208.501 0/0:124:124,0:124:4985:0:0:0,-37.3277,-448.511 0/0:50:49,1:49:1944:1:40:0,-11.0558,-171.157 0/0:47:47,0:47:1886:0:0:0,-14.1484,-169.941 dDocent_Contig_6721 20 . G A 170.317 . AB=0.235294;ABP=34.0496;AC=1;AF=0.125;AN=8;AO=12;CIGAR=1X;DP=188;DPB=188;DPRA=1.11679;EPP=29.068;EPPR=385.189;GTI=0;LEN=1;MEANALT=1;MQM=33.5;MQMR=57.8352;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.982955;PAO=0;PQA=0;PQR=0;PRO=0;QA=460;QR=6928;RO=176;RPL=0;RPP=29.068;RPPR=385.189;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=176;SRP=385.189;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:49:49,0:49:1921:0:0:0,-14.7505,-172.348 0/0:60:60,0:60:2337:0:0:0,-18.0618,-210.35 0/1:51:39,12:39:1556:12:460:-18.7307,0,-124.789 0/0:28:28,0:28:1114:0:0:0,-8.42884,-100.445 dDocent_Contig_6722 106 . N A 457.923 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=14;CIGAR=2X;DP=14;DPB=14;DPRA=0;EPP=33.4109;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=1.69407e-21;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=492;QR=0;RO=0;RPL=0;RPP=33.4109;RPPR=0;RPR=14;RUN=1;SAF=0;SAP=33.4109;SAR=14;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:6:0,6:0:0:6:212:-19.4251,-1.80618,0 1|1:4:0,4:0:0:4:141:-13.0371,-1.20412,0 1|1:4:0,4:0:0:4:139:-12.8527,-1.20412,0 .:.:.:.:.:.:.:. dDocent_Contig_6723 18 . C G 220.165 . AB=0.137097;ABP=144.856;AC=2;AF=0.25;AN=8;AO=18;CIGAR=1X1M1X;DP=284;DPB=284;DPRA=0.60396;EPP=42.0968;EPPR=574.108;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=715;QR=10469;RO=263;RPL=0;RPP=42.0968;RPPR=574.108;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=263;SRP=574.108;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:101:100,0:100:3991:0:0:0,-30.103,-358.99 0|1:88:74,14:74:2939:14:554:-23.7131,0,-238.121 0|0:59:56,1:56:2237:1:41:0,-13.4549,-197.446 0|1:36:33,3:33:1302:3:120:-0.35061,0,-106.612 dDocent_Contig_6724 11 . T C 684.337 . AB=0.217687;ABP=104.774;AC=1;AF=0.125;AN=8;AO=37;CIGAR=1X;DP=465;DPB=465;DPRA=0.623457;EPP=83.3548;EPPR=932.4;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.7664;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.995327;PAO=0;PQA=0;PQR=0;PRO=0;QA=1468;QR=17072;RO=428;RPL=0;RPP=83.3548;RPPR=932.4;RPR=37;RUN=1;SAF=37;SAP=83.3548;SAR=0;SRF=428;SRP=932.4;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:162:162,0:162:6481:0:0:0,-48.7669,-583.008 0/1:147:115,32:115:4579:32:1268:-70.1326,0,-362.479 0/0:94:90,4:90:3591:4:159:0,-13.6049,-308.52 0/0:62:61,1:61:2421:1:41:0,-14.5693,-213.94 dDocent_Contig_6725 186 . C T 275.668 . AB=0.143885;ABP=156.123;AC=2;AF=0.25;AN=8;AO=24;CIGAR=1X;DP=231;DPB=231;DPRA=6.08333;EPP=55.1256;EPPR=452.505;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=963;QR=8206;RO=207;RPL=24;RPP=55.1256;RPPR=452.505;RPR=0;RUN=1;SAF=0;SAP=55.1256;SAR=24;SRF=0;SRP=452.505;SRR=207;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:78:66,12:66:2640:12:478:-19.889,0,-214.236 0/0:80:76,4:76:3008:4:162:0,-9.11544,-255.847 0/1:61:53,8:53:2081:8:323:-11.0758,0,-169.111 0/0:12:12,0:12:477:0:0:0,-3.61236,-43.2757 dDocent_Contig_6727 12 . G A 1143.41 . AB=0.139955;ABP=501.817;AC=3;AF=0.375;AN=8;AO=62;CIGAR=2X5M;DP=443;DPB=439.857;DPRA=0;EPP=137.642;EPPR=608.851;GTI=0;LEN=1;MEANALT=6.5;MQM=60;MQMR=60;NS=4;NUMALT=5;ODDS=0;PAIRED=0;PAIREDR=0.293907;PAO=0;PQA=0;PQR=0;PRO=0;QA=2423;QR=10746;RO=279;RPL=0;RPP=137.642;RPPR=608.851;RPR=62;RUN=1;SAF=62;SAP=137.642;SAR=0;SRF=279;SRP=608.851;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:124:80,5,13,0,1,15:80:3080:5,13,0,1,15:170,512,0,39,591:-24.543,-34.8433,-286.213,-6.50149,-245.596,-255.469,-48.6254,-287.718,-259.383,-301.505,-45.4195,-284.513,-256.177,-298.299,-297.998,0,-239.096,-210.759,-252.882,-249.676,-248.366 0|1:110:69,5,11,6,7,10:69:2655:5,11,6,7,10:192,429,217,267,397:-14.4938,-19.5044,-235.968,0,-202.209,-214.659,-17.5567,-219.762,-200.259,-233.717,-13.3622,-215.57,-196.067,-213.62,-229.223,-2.57865,-204.789,-185.286,-202.839,-198.647,-217.54 0|1:143:88,8,26,0,8,10:88:3390:8,26,0,8,10:269,1023,0,303,370:-57.676,-62.3869,-338.326,0,-256.583,-270.539,-84.1667,-340.734,-278.366,-362.518,-59.3256,-315.894,-253.526,-337.678,-335.269,-53.9089,-310.477,-248.108,-332.26,-307.42,-329.25 0|1:66:42,4,12,2,1,4:42:1621:4,12,2,1,4:147,459,76,40,161:-25.0256,-25.6518,-157.578,0,-121.124,-129.529,-31.435,-152.549,-126.908,-163.964,-34.3725,-155.487,-129.846,-161.271,-167.203,-24.3935,-145.512,-119.87,-151.295,-154.233,-156.324 dDocent_Contig_6728 12 . C G 1372.5 . AB=0.18984;ABP=315.517;AC=2;AF=0.25;AN=8;AO=87;CIGAR=1X;DP=694;DPB=694;DPRA=0;EPP=191.928;EPPR=1321.09;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3446;QR=24168;RO=607;RPL=0;RPP=191.928;RPPR=1321.09;RPR=87;RUN=1;SAF=87;SAP=191.928;SAR=0;SRF=607;SRP=1321.09;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:206:155,51:155:6212:51:2013:-119.35,0,-496.815 0/0:226:214,12:214:8490:12:488:0,-23.7613,-719.345 0/1:168:148,20:148:5881:20:795:-21.2977,0,-478.51 0/0:94:90,4:90:3585:4:150:0,-14.4319,-308.81 dDocent_Contig_6729 28 . A C 95.5457 . AB=0.0833333;ABP=39.2015;AC=2;AF=0.25;AN=8;AO=2;CIGAR=1X3M;DP=165;DPB=165;DPRA=0.372093;EPP=7.35324;EPPR=348.274;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=6292;RO=159;RPL=0;RPP=7.35324;RPPR=348.274;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=159;SRP=348.274;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:24:22,0,2:22:882:0,2:0,81:-0.461014,-7.08367,-79.7477,0,-73.0682,-72.4661 0|0:97:97,0,0:97:3821:0,0:0,0:0,-29.1999,-343.935,-29.1999,-343.935,-343.935 0|0:32:32,0,0:32:1273:0,0:0,0:0,-9.63296,-114.846,-9.63296,-114.846,-114.846 0|1:12:8,4,0:8:316:4,0:161,0:-11.2504,0,-25.1918,-13.6587,-26.3959,-39.6553 dDocent_Contig_6730 64 . T A 140.676 . AB=0.134454;ABP=141.127;AC=3;AF=0.375;AN=8;AO=16;CIGAR=1X;DP=190;DPB=190;DPRA=0.558685;EPP=37.7539;EPPR=380.846;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=579;QR=6193;RO=174;RPL=16;RPP=37.7539;RPPR=380.846;RPR=0;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=174;SRP=380.846;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:71:71,0:71:2514:0:0:0,-21.3731,-226.515 0/1:52:47,5:47:1706:5:185:-1.35646,0,-138.167 0/1:44:40,4:40:1425:4:146:-0.252389,0,-115.302 0/1:23:16,7:16:548:7:248:-15.7408,0,-42.7186 dDocent_Contig_6731 20 . T G 545.825 . AB=0.166667;ABP=188.309;AC=2;AF=0.25;AN=8;AO=44;CIGAR=1X;DP=365;DPB=365;DPRA=0;EPP=98.5551;EPPR=700.053;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1747;QR=12874;RO=321;RPL=0;RPP=98.5551;RPPR=700.053;RPR=44;RUN=1;SAF=44;SAP=98.5551;SAR=0;SRF=321;SRP=700.053;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:126:117,9:117:4711:9:346:0,-6.44064,-392.397 0/1:109:87,22:87:3456:22:872:-45.9754,0,-278.269 0/1:83:73,10:73:2944:10:407:-12.0051,0,-240.053 0/0:47:44,3:44:1763:3:122:0,-2.77592,-147.509 dDocent_Contig_6732 33 . G A 3947.82 . AB=0.581498;ABP=16.1061;AC=4;AF=0.5;AN=8;AO=132;CIGAR=1X;DP=227;DPB=227;DPRA=0;EPP=289.645;EPPR=209.3;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.916667;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5216;QR=3713;RO=95;RPL=0;RPP=289.645;RPPR=209.3;RPR=132;RUN=1;SAF=132;SAP=289.645;SAR=0;SRF=95;SRP=209.3;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:111:53,58:53:2092:58:2284:-172.324,0,-155.068 0/1:40:9,31:9:355:31:1241:-99.9207,0,-20.271 0/1:49:20,29:20:766:29:1145:-88.5837,0,-54.4972 0/1:27:13,14:13:500:14:546:-41.351,0,-37.216 dDocent_Contig_6733 12 . T G 132.235 . AB=0.102222;ABP=312.238;AC=1;AF=0.125;AN=8;AO=23;CIGAR=1X;DP=754;DPB=754;DPRA=1.27599;EPP=52.9542;EPPR=1590.36;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=0.997264;PAO=0;PQA=0;PQR=0;PRO=0;QA=915;QR=29291;RO=731;RPL=0;RPP=52.9542;RPPR=1590.36;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=731;SRP=1590.36;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:252:252,0:252:10110:0:0:0,-75.8596,-909.232 0/1:225:202,23:202:8092:23:915:-14.9224,0,-660.095 0/0:184:184,0:184:7357:0:0:0,-55.3895,-661.766 0/0:93:93,0:93:3732:0:0:0,-27.9958,-335.885 dDocent_Contig_6734 21 . C T 226.224 . 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AB=0.289474;ABP=17.6392;AC=1;AF=0.125;AN=8;AO=11;CIGAR=2X;DP=165;DPB=165;DPRA=0.897638;EPP=26.8965;EPPR=335.246;GTI=0;LEN=1;MEANALT=1;MQM=59.2727;MQMR=59.7124;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=422;QR=5712;RO=153;RPL=0;RPP=26.8965;RPPR=335.246;RPR=11;RUN=1;SAF=0;SAP=26.8965;SAR=11;SRF=0;SRP=335.246;SRR=153;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:68:68,0:68:2533:0:0:0,-20.47,-228.155 0|1:38:27,11:27:1001:11:422:-26.8856,0,-78.9524 0|0:37:37,0:37:1368:0:0:0,-11.1381,-123.37 0|0:22:21,0:21:810:0:0:0,-6.32163,-72.8133 dDocent_Contig_6740 26 . T C 351.122 . 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T C 3434.15 . AB=0.611702;ABP=23.3852;AC=4;AF=0.5;AN=8;AO=115;CIGAR=1X2M1X;DP=188;DPB=188;DPRA=0;EPP=252.73;EPPR=159.356;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4515;QR=2853;RO=72;RPL=0;RPP=252.73;RPPR=159.356;RPR=115;RUN=1;SAF=115;SAP=252.73;SAR=0;SRF=72;SRP=159.356;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:37:15,22:15:601:22:851:-65.7675,0,-43.2909 0|1:70:33,37:33:1297:37:1462:-110.768,0,-95.926 0|1:45:15,29:15:594:29:1137:-88.9666,0,-40.1433 0|1:36:9,27:9:361:27:1065:-85.3106,0,-22.0163 dDocent_Contig_6761 34 . G A 2727.77 . 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G C 660.296 . AB=0.27619;ABP=48.6939;AC=2;AF=0.25;AN=8;AO=29;CIGAR=1X;DP=296;DPB=296;DPRA=0.549738;EPP=65.983;EPPR=582.793;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1115;QR=10424;RO=267;RPL=0;RPP=65.983;RPPR=582.793;RPR=29;RUN=1;SAF=0;SAP=65.983;SAR=29;SRF=0;SRP=582.793;SRR=267;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:88:88,0:88:3423:0:0:0,-26.4906,-308.17 0/0:103:103,0:103:4009:0:0:0,-31.0061,-360.867 0/1:73:49,24:49:1936:24:921:-61.2285,0,-152.481 0/1:32:27,5:27:1056:5:194:-8.19897,0,-85.7066 dDocent_Contig_6767 51 . T A 15311.7 . AB=0.502879;ABP=3.08532;AC=4;AF=0.5;AN=8;AO=524;CIGAR=1X;DP=1042;DPB=1042;DPRA=0;EPP=1140.86;EPPR=1125.66;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=20586;QR=20331;RO=517;RPL=524;RPP=1140.86;RPPR=1125.66;RPR=0;RUN=1;SAF=524;SAP=1140.86;SAR=0;SRF=517;SRP=1125.66;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:319:158,161:158:6271:161:6273:-468.334,0,-468.13 0/1:338:173,164:173:6792:164:6516:-484.364,0,-509.197 0/1:228:112,116:112:4376:116:4576:-343.159,0,-325.178 0/1:157:74,83:74:2892:83:3221:-242.707,0,-213.123 dDocent_Contig_6768 28 . C A 60.5182 . 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AB=0;ABP=0;AC=4;AF=1;AN=4;AO=14;CIGAR=1X;DP=14;DPB=14;DPRA=0;EPP=33.4109;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0.928571;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=469;QR=0;RO=0;RPL=14;RPP=33.4109;RPPR=0;RPR=0;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:68:-6.45793,-0.60206,0 1/1:12:0,12:0:0:12:401:-36.4122,-3.61236,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_6770 21 . T A 449.447 . AB=0.157068;ABP=198.113;AC=1;AF=0.125;AN=8;AO=43;CIGAR=1X;DP=675;DPB=675;DPRA=0.653509;EPP=96.3836;EPPR=1375.38;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1652;QR=24977;RO=632;RPL=0;RPP=96.3836;RPPR=1375.38;RPR=43;RUN=1;SAF=43;SAP=96.3836;SAR=0;SRF=632;SRP=1375.38;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:228:228,0:228:9031:0:0:0,-68.6348,-812.322 0/0:180:169,11:169:6686:11:429:0,-15.2252,-562.532 0/1:191:161,30:161:6346:30:1154:-46.6437,0,-513.436 0/0:76:74,2:74:2914:2:69:0,-16.3264,-255.832 dDocent_Contig_6771 25 . G A 449.128 . 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AB=0.190909;ABP=94.2911;AC=2;AF=0.25;AN=8;AO=21;CIGAR=1X;DP=220;DPB=220;DPRA=1;EPP=48.6112;EPPR=432.962;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=838;QR=7794;RO=198;RPL=0;RPP=48.6112;RPPR=432.962;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=198;SRP=432.962;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:68:68,0:68:2682:0:0:0,-20.47,-241.507 0/1:57:45,11:45:1785:11:438:-22.5079,0,-143.599 0/1:53:43,10:43:1690:10:400:-20.4039,0,-136.377 0/0:42:42,0:42:1637:0:0:0,-12.6433,-147.564 dDocent_Contig_6780 31 . C T 2466.32 . AB=0.43299;ABP=10.5769;AC=4;AF=0.5;AN=8;AO=84;CIGAR=1X3M;DP=194;DPB=194;DPRA=0;EPP=185.414;EPPR=183.243;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3385;QR=3250;RO=83;RPL=0;RPP=185.414;RPPR=183.243;RPR=84;RUN=1;SAF=84;SAP=185.414;SAR=0;SRF=83;SRP=183.243;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:71:37,4,30:37:1453:4,30:159,1212:-88.7859,-86.8341,-205.125,0,-106.405,-110.466 0|1:82:33,14,33:33:1285:14,33:561,1327:-99.4222,-63.1372,-164.522,0,-59.3756,-95.664 0|1:28:7,6,15:7:282:6,15:237,601:-47.4055,-30.0121,-51.4502,0,-3.74914,-18.7323 0|1:13:6,1,6:6:230:1,6:40,245:-18.4164,-16.9286,-35.4902,0,-15.5633,-17.0546 dDocent_Contig_6781 26 . A T 1130.52 . AB=0.106173;ABP=548.618;AC=2;AF=0.25;AN=8;AO=50;CIGAR=2M1X1M;DP=572;DPB=547;DPRA=0;EPP=111.584;EPPR=1023.6;GTI=0;LEN=1;MEANALT=2.25;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.98;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1974;QR=18473;RO=470;RPL=0;RPP=111.584;RPPR=1023.6;RPR=50;RUN=1;SAF=50;SAP=111.584;SAR=0;SRF=470;SRP=1023.6;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:224:175,19,29:175:6894:19,29:714,1154:-42.346,-36.552,-597.953,0,-508.66,-558.411 0|0:167:159,0,7:159:6244:0,7:0,285:0,-47.8638,-561.375,-24.3557,-537.864,-535.757 0|0:114:81,28,5:81:3203:28,5:1092,201:-65.3616,0,-255.152,-73.1799,-247.017,-335.266 0|1:67:55,3,9:55:2132:3,9:121,334:-10.7422,-17.3165,-191.563,0,-165.145,-172.411 dDocent_Contig_6782 30 . A G 169.458 . AB=0.18;ABP=47.4821;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X;DP=159;DPB=159;DPRA=1.37615;EPP=22.5536;EPPR=328.731;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=367;QR=5913;RO=150;RPL=0;RPP=22.5536;RPPR=328.731;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=150;SRP=328.731;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:50:41,9:41:1635:9:367:-18.3438,0,-132.329 0/0:46:46,0:46:1786:0:0:0,-13.8474,-160.964 0/0:37:37,0:37:1471:0:0:0,-11.1381,-132.64 0/0:26:26,0:26:1021:0:0:0,-7.82678,-92.1807 dDocent_Contig_6784 90 . A G 217.042 . AB=0.211268;ABP=54.4222;AC=2;AF=0.25;AN=8;AO=17;CIGAR=1X;DP=131;DPB=131;DPRA=0;EPP=39.9253;EPPR=250.558;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=579;QR=3874;RO=114;RPL=17;RPP=39.9253;RPPR=250.558;RPR=0;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=114;SRP=250.558;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:23,6:23:769:6:208:-10.3297,0,-60.7893 0/0:31:30,1:30:1037:1:35:0,-5.8333,-90.1424 0/1:42:33,9:33:1121:9:301:-14.7724,0,-88.5507 0/0:29:28,1:28:947:1:35:0,-5.23124,-82.0399 dDocent_Contig_6785 76 . T A 30.7298 . AB=0.176471;ABP=18.4661;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=89;DPB=89;DPRA=0.708333;EPP=9.52472;EPPR=189.757;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=106;QR=3034;RO=86;RPL=3;RPP=9.52472;RPPR=189.757;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=86;SRP=189.757;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:21:21,0:21:735:0:0:0,-6.32163,-66.4713 0/1:17:14,3:14:501:3:106:-4.77159,0,-40.3093 0/0:35:35,0:35:1234:0:0:0,-10.536,-111.363 0/0:16:16,0:16:564:0:0:0,-4.81648,-51.0895 dDocent_Contig_6786 41 . A G 4679.11 . AB=0.0904523;ABP=292.929;AC=0;AF=0;AN=8;AO=18;CIGAR=1X3M9D19M;DP=486;DPB=464.25;DPRA=0;EPP=42.0968;EPPR=422.104;GTI=0;LEN=1;MEANALT=7.5;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=662;QR=7380;RO=193;RPL=18;RPP=42.0968;RPPR=422.104;RPR=0;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=193;SRP=422.104;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:158:89,0,42,25:89:3410:0,42,25:0,1523,786:-97.5897,-124.381,-404.259,0,-279.911,-267.268,-61.2107,-341.083,-216.739,-333.557 0|0:145:28,14,55,41:28:1081:14,55,41:520,1884,1444:-173.21,-139.088,-223.662,-28.7389,-74.9794,-100.972,-64.1,-110.34,0,-140.548 0|0:129:48,0,65,14:48:1840:0,65,14:0,2307,519:-173.473,-187.923,-338.944,0,-151.022,-131.455,-145.457,-296.48,-108.561,-292.265 0|0:54:28,4,13,7:28:1049:4,13,7:142,482,228:-31.0355,-27.8946,-112.618,0,-74.3814,-82.0356,-21.0701,-95.4272,-67.5543,-104.887 dDocent_Contig_6787 64 . T A 4704.61 . AB=0.443709;ABP=11.3223;AC=4;AF=0.5;AN=8;AO=134;CIGAR=1X3M;DP=302;DPB=302;DPRA=0;EPP=293.988;EPPR=194.1;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5055;QR=3193;RO=88;RPL=134;RPP=293.988;RPPR=194.1;RPR=0;RUN=1;SAF=134;SAP=293.988;SAR=0;SRF=88;SRP=194.1;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:89:19,12,58:19:674:12,58:433,2180:-172.885,-143.269,-194.564,0,-19.5679,-37.4485 0|1:104:26,55,23:26:954:55,23:1991,883:-154.696,0,-61.4194,-90.0331,-5.48499,-161.096 0|1:64:31,5,28:31:1128:5,28:185,1069:-78.3853,-72.5839,-163.203,0,-76.9921,-83.6991 0|1:45:12,8,25:12:437:8,25:285,923:-71.893,-52.2786,-85.5652,0,-12.4744,-28.1755 dDocent_Contig_6788 50 . T A 229.533 . AB=0.164706;ABP=86.0116;AC=1;AF=0.125;AN=8;AO=14;CIGAR=1X1M1X;DP=361;DPB=361;DPRA=0.923913;EPP=33.4109;EPPR=749.997;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=550;QR=13487;RO=344;RPL=14;RPP=33.4109;RPPR=749.997;RPR=0;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=344;SRP=749.997;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:85:70,14:70:2704:14:550:-24.3512,0,-218.033 0|0:129:129,0:129:5077:0:0:0,-38.8329,-456.851 0|0:76:75,0:75:2937:0:0:0,-22.5772,-264.054 0|0:71:70,0:70:2769:0:0:0,-21.0721,-248.996 dDocent_Contig_6789 10 . A T 825.671 . AB=0.0598291;ABP=199.909;AC=0;AF=0;AN=8;AO=7;CIGAR=1X3M1X;DP=565;DPB=565;DPRA=0.903475;EPP=18.2106;EPPR=1014.92;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=276;QR=18432;RO=466;RPL=0;RPP=18.2106;RPPR=1014.92;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=466;SRP=1014.92;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:198:168,0,12,15:168:6647:0,12,15:0,488,598:0,-50.573,-597.593,-10.3173,-557.339,-553.727,-1.33488,-548.351,-508.098,-543.836 0|0:189:151,0,6,28:151:5954:0,6,28:0,244,1131:-47.7871,-93.2427,-583.081,-73.1154,-562.954,-561.148,0,-489.841,-469.714,-481.412 0|0:117:90,7,0,20:90:3559:7,0,20:276,0,793:-38.1779,-42.5643,-333.336,-65.2706,-335.443,-358.15,0,-270.174,-292.881,-286.86 0|0:61:57,0,0,4:57:2272:0,0,4:0,0,164:0,-17.1587,-204.242,-17.1587,-204.242,-204.242,-3.21293,-190.705,-190.705,-189.501 dDocent_Contig_6790 114 . C T 11688.5 . AB=0.20132;ABP=237.794;AC=2;AF=0.25;AN=8;AO=62;CIGAR=2X;DP=476;DPB=476;DPRA=0;EPP=137.642;EPPR=83.3548;GTI=0;LEN=1;MEANALT=2;MQM=59.9677;MQMR=60;NS=4;NUMALT=2;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2100;QR=1225;RO=37;RPL=0;RPP=137.642;RPPR=83.3548;RPR=62;RUN=1;SAF=0;SAP=137.642;SAR=62;SRF=0;SRP=83.3548;SRR=37;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:180:18,25,137:18:594:25,137:861,4754:-402.806,-338.289,-378.787,-21.9255,0,-28.7033 0|0:130:17,0,113:17:564:0,113:0,3916:-313.472,-318.589,-364.215,0,-45.9593,-11.9429 1|0:123:2,36,85:2:67:36,85:1204,2950:-331.263,-234.386,-228.975,-92.0563,0,-71.8949 0|0:43:0,1,42:0:0:1,42:35,1409:-126.71,-123.861,-123.56,-12.6433,-9.44566,0 dDocent_Contig_6791 28 . G A 290.321 . AB=0.229508;ABP=41.7764;AC=2;AF=0.25;AN=8;AO=16;CIGAR=1X;DP=111;DPB=111;DPRA=2.13333;EPP=37.7539;EPPR=209.3;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=635;QR=3623;RO=95;RPL=0;RPP=37.7539;RPPR=209.3;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=95;SRP=209.3;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:35:33,2:33:1243:2:79:0,-3.03842,-104.652 0/1:46:34,12:34:1308:12:475:-29.2525,0,-104.15 0/1:15:13,2:13:503:2:81:-3.17028,0,-41.095 0/0:15:15,0:15:569:0:0:0,-4.51545,-51.5475 dDocent_Contig_6793 74 . G A 77.6295 . AB=0.130435;ABP=112.15;AC=2;AF=0.25;AN=8;AO=15;CIGAR=1X;DP=207;DPB=207;DPRA=0.666667;EPP=35.5824;EPPR=419.933;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.947917;PAO=0;PQA=0;PQR=0;PRO=0;QA=532;QR=6679;RO=192;RPL=15;RPP=35.5824;RPPR=419.933;RPR=0;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=192;SRP=419.933;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:70:61,9:61:2117:9:318:-7.88861,0,-169.729 0/0:69:69,0:69:2407:0:0:0,-20.7711,-216.892 0/0:46:43,3:43:1497:3:108:0,-3.77221,-124.948 0/1:22:19,3:19:658:3:106:-3.26644,0,-52.921 dDocent_Contig_6794 61 . G A 2677.93 . AB=0.228296;ABP=401.849;AC=4;AF=0.5;AN=8;AO=142;CIGAR=1X;DP=622;DPB=622;DPRA=0;EPP=311.359;EPPR=1043.15;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=2.77556e-17;PAIRED=0.985915;PAIREDR=0.997912;PAO=0;PQA=0;PQR=0;PRO=0;QA=5125;QR=16948;RO=479;RPL=142;RPP=311.359;RPPR=1043.15;RPR=0;RUN=1;SAF=142;SAP=311.359;SAR=0;SRF=479;SRP=1043.15;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:194:140,54:140:4928:54:1940:-116.462,0,-385.25 0/1:192:160,31:160:5650:31:1115:-42.8484,0,-450.789 0/1:170:135,35:135:4778:35:1265:-62.9738,0,-378.973 0/1:66:44,22:44:1592:22:805:-52.9069,0,-123.698 dDocent_Contig_6795 98 . N T 44.6479 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=47;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:47:-4.46369,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_6796 7 . A C 78.9817 . AB=0.217391;ABP=18.9659;AC=2;AF=0.25;AN=8;AO=5;CIGAR=1X;DP=55;DPB=55;DPRA=0.71875;EPP=13.8677;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=0.4;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=194;QR=1894;RO=50;RPL=0;RPP=13.8677;RPPR=111.584;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:18:18,0:18:686:0:0:0,-5.41854,-62.0729 0/1:14:11,3:11:416:3:117:-6.69596,0,-33.5754 0/0:14:14,0:14:525:0:0:0,-4.21442,-47.5892 0/1:9:7,2:7:267:2:77:-4.59987,0,-21.6832 dDocent_Contig_6797 56 . T A 82528.5 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=2409;CIGAR=1X;DP=2493;DPB=2493;DPRA=0;EPP=5234.09;EPPR=183.243;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.983811;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=95110;QR=3317;RO=83;RPL=2409;RPP=5234.09;RPPR=183.243;RPR=0;RUN=1;SAF=2409;SAP=5234.09;SAR=0;SRF=83;SRP=183.243;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:630:19,611:19:767:611:24180:-2104.82,-120.298,0 1/1:696:19,677:19:752:677:26909:-2351.47,-141.513,0 1/1:661:22,638:22:880:638:25079:-2175.54,-119.273,0 1/1:506:23,483:23:918:483:18942:-1620.41,-69.3971,0 dDocent_Contig_6798 116 . A T 224.823 . AB=0.2;ABP=57.7314;AC=2;AF=0.25;AN=8;AO=14;CIGAR=1X;DP=143;DPB=143;DPRA=0.958904;EPP=12.937;EPPR=283.13;GTI=0;LEN=1;MEANALT=1;MQM=49.8571;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.428571;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=529;QR=4210;RO=129;RPL=0;RPP=33.4109;RPPR=283.13;RPR=14;RUN=1;SAF=11;SAP=12.937;SAR=3;SRF=0;SRP=283.13;SRR=129;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:17:17,0:17:568:0:0:0,-5.11751,-51.4372 0/0:56:56,0:56:1806:0:0:0,-16.8577,-162.811 0/1:51:42,9:42:1398:9:331:-14.5406,0,-110.757 0/1:19:14,5:14:438:5:198:-11.3396,0,-34.0024 dDocent_Contig_6799 209 . N G 157.695 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=163;QR=0;RO=0;RPL=4;RPP=11.6962;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:122:-11.3725,-0.90309,0 1/1:1:0,1:0:0:1:41:-4.09457,-0.30103,0 ./.:.:.:.:.:.:.:. dDocent_Contig_6801 7 . A T 3144.75 . AB=0.615819;ABP=23.6332;AC=4;AF=0.5;AN=8;AO=109;CIGAR=2X;DP=177;DPB=177;DPRA=0;EPP=239.701;EPPR=141.985;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=1.38778e-17;PAIRED=0.944954;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4150;QR=2440;RO=64;RPL=0;RPP=239.701;RPPR=141.985;RPR=109;RUN=1;SAF=109;SAP=239.701;SAR=0;SRF=64;SRP=141.985;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:40:17,23,0:17:656:23,0:875,0:-67.0296,0,-47.336,-72.1471,-54.2597,-126.023 0|1:44:12,29,3:12:458:29,3:1110,117:-87.4719,0,-28.8392,-81.4659,-27.9498,-118.138 0|1:59:16,42,1:16:614:42,1:1608,39:-127.139,0,-37.7509,-128.749,-47.1879,-178.849 0|1:34:19,15,0:19:712:15,0:557,0:-40.2324,0,-54.1703,-45.952,-58.6858,-104.265 dDocent_Contig_6802 94 . A G 152.604 . AB=0.164557;ABP=80.2213;AC=1;AF=0.125;AN=8;AO=13;CIGAR=1X;DP=278;DPB=278;DPRA=1.19095;EPP=31.2394;EPPR=578.45;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=449;QR=9329;RO=265;RPL=13;RPP=31.2394;RPPR=578.45;RPR=0;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=265;SRP=578.45;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:85:85,0:85:2995:0:0:0,-25.5875,-269.786 0/0:74:74,0:74:2599:0:0:0,-22.2762,-234.161 0/1:79:66,13:66:2330:13:449:-16.9594,0,-186.18 0/0:40:40,0:40:1405:0:0:0,-12.0412,-126.748 dDocent_Contig_6803 96 . A C 1870.83 . AB=0.414894;ABP=14.8379;AC=3;AF=0.375;AN=8;AO=81;CIGAR=1X;DP=242;DPB=242;DPRA=0;EPP=178.9;EPPR=352.617;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2863;QR=5687;RO=161;RPL=81;RPP=178.9;RPPR=352.617;RPR=0;RUN=1;SAF=81;SAP=178.9;SAR=0;SRF=161;SRP=352.617;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:54:51,3:51:1765:3:106:0,-6.36652,-149.237 0/1:78:42,36:42:1499:36:1281:-92.1121,0,-111.724 0/1:73:45,28:45:1599:28:987:-67.1669,0,-122.224 0/1:37:23,14:23:824:14:489:-33.202,0,-63.3445 dDocent_Contig_6805 133 . T C 105.69 . AB=0.333333;ABP=7.35324;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=47;DPB=47;DPRA=1.86207;EPP=16.0391;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.878049;PAO=0;PQA=0;PQR=0;PRO=0;QA=193;QR=1403;RO=41;RPL=0;RPP=16.0391;RPPR=92.0407;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=92.0407;SRR=41;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:13:13,0:13:454:0:0:0,-3.91339,-41.1933 0/0:5:5,0:5:172:0:0:0,-1.50515,-15.8183 0/0:11:11,0:11:362:0:0:0,-3.31133,-32.8979 0/1:18:12,6:12:415:6:193:-12.268,0,-32.2635 dDocent_Contig_6806 12 . G C 1871.28 . AB=0.0823413;ABP=1530.29;AC=1;AF=0.125;AN=8;AO=83;CIGAR=2X2M;DP=1008;DPB=1008;DPRA=0;EPP=183.243;EPPR=1258.12;GTI=0;LEN=1;MEANALT=6.25;MQM=59.9759;MQMR=57.8408;NS=4;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=0.99308;PAO=0;PQA=0;PQR=0;PRO=0;QA=3328;QR=21945;RO=578;RPL=0;RPP=183.243;RPPR=1258.12;RPR=83;RUN=1;SAF=83;SAP=183.243;SAR=0;SRF=578;SRP=1258.12;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:331:183,52,42,16,31:183:6935:52,42,16,31:1967,1687,638,1238:-83.9481,-49.9432,-601.069,0,-477.708,-554.191,-86.4909,-564.183,-514.294,-648.495,-37.0602,-514.761,-464.869,-551.347,-594.556 0|0:274:159,39,21,23,22:159:6053:39,21,23,22:1469,841,909,885:-26.8958,-3.00116,-486.545,-5.46882,-429.006,-494.474,0,-423.538,-426.045,-488.403,-1.81193,-425.35,-427.858,-422.389,-490.517 0|0:254:139,51,13,18,22:139:5307:51,13,18,22:1932,525,691,867:-57.2777,0,-419.064,-55.8331,-391.137,-486.377,-42.6811,-377.987,-433.859,-471.721,-27.7869,-363.097,-418.969,-405.818,-455.627 0|0:149:97,16,7,17,5:97:3650:16,7,17,5:612,275,675,195:-26.4028,-25.3948,-317.645,-32.9756,-299.843,-327.966,0,-266.89,-274.5,-292.001,-39.5682,-306.433,-314.044,-281.09,-335.158 dDocent_Contig_6807 8 . A C 4065.88 . AB=0.0753205;ABP=980.521;AC=0;AF=0;AN=8;AO=47;CIGAR=1X3M1X;DP=624;DPB=624;DPRA=0;EPP=105.07;EPPR=763.026;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1813;QR=13580;RO=350;RPL=0;RPP=105.07;RPPR=763.026;RPR=47;RUN=1;SAF=47;SAP=105.07;SAR=0;SRF=350;SRP=763.026;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:184:116,10,12,46:116:4520:10,12,46:388,485,1797:-112.774,-115.815,-484.314,-107.915,-447.547,-475.814,0,-339.628,-331.729,-357.659 0|0:207:117,7,16,64:117:4534:7,16,64:270,637,2541:-173.873,-186.921,-557.281,-156.918,-507.213,-524.569,0,-350.299,-320.296,-353.206 0|0:154:72,25,21,34:72:2793:25,21,34:967,831,1335:-88.0725,-30.3217,-252.258,-41.6736,-191.711,-264.815,0,-150.037,-161.39,-219.228 0|0:79:45,5,16,13:45:1733:5,16,13:188,644,523:-39.2663,-37.4159,-178.184,0,-126.877,-137.46,-9.74452,-136.622,-99.2076,-148.108 dDocent_Contig_6808 37 . T A 1260.04 . AB=0.226766;ABP=177.447;AC=4;AF=0.5;AN=8;AO=61;CIGAR=2X2M1X3M1X1M3I3M1X1M1X;DP=269;DPB=282.188;DPRA=0;EPP=135.47;EPPR=445.991;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2362;QR=7964;RO=204;RPL=0;RPP=135.47;RPPR=445.991;RPR=61;RUN=1;SAF=61;SAP=135.47;SAR=0;SRF=204;SRP=445.991;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:76:58,18:58:2265:18:708:-41.1721,0,-181.168 0|1:92:59,30:59:2305:30:1147:-76.3303,0,-180.45 0|1:63:56,7:56:2175:7:269:-5.60795,0,-176.991 0|1:38:31,6:31:1219:6:238:-10.2912,0,-98.4974 dDocent_Contig_6809 48 . T C 151.743 . AB=0.225806;ABP=23.254;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=94;DPB=94;DPRA=1.47619;EPP=18.2106;EPPR=191.928;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=287;QR=3445;RO=87;RPL=0;RPP=18.2106;RPPR=191.928;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=87;SRP=191.928;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:26:26,0:26:1029:0:0:0,-7.82678,-92.9035 0/1:31:24,7:24:958:7:287:-16.8733,0,-77.1921 0/0:25:25,0:25:1003:0:0:0,-7.52575,-90.562 0/0:12:12,0:12:455:0:0:0,-3.61236,-41.2926 dDocent_Contig_6810 12 . C T 1703.56 . AB=0.326923;ABP=57.1301;AC=3;AF=0.375;AN=8;AO=70;CIGAR=1X3M1X;DP=234;DPB=234;DPRA=0;EPP=155.013;EPPR=359.132;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2716;QR=6443;RO=164;RPL=0;RPP=155.013;RPPR=359.132;RPR=70;RUN=1;SAF=70;SAP=155.013;SAR=0;SRF=164;SRP=359.132;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:57:43,14:43:1685:14:547:-32.4162,0,-134.729 0|1:79:55,24:55:2151:24:924:-59.6879,0,-170.001 0|1:72:42,30:42:1667:30:1167:-83.6493,0,-128.595 0|0:26:24,2:24:940:2:78:0,-0.423307,-77.5031 dDocent_Contig_6811 1 . N G 106.324 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=114;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:114:-10.6318,-0.90309,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_6812 114 . T A 457.767 . AB=0.35;ABP=14.7363;AC=2;AF=0.25;AN=8;AO=24;CIGAR=1X;DP=171;DPB=171;DPRA=0.684524;EPP=55.1256;EPPR=320.045;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=827;QR=5147;RO=146;RPL=0;RPP=55.1256;RPPR=320.045;RPR=24;RUN=1;SAF=0;SAP=55.1256;SAR=24;SRF=0;SRP=320.045;SRR=146;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:39:26,13:26:925:13:457:-29.7239,0,-71.8274 0/0:56:56,0:56:1964:0:0:0,-16.8577,-177.029 0/0:55:52,3:52:1842:3:87:0,-8.43881,-157.94 0/1:21:12,8:12:416:8:283:-19.4507,0,-31.4105 dDocent_Contig_6813 154 . A G 53.2315 . AB=0.142857;ABP=34.0313;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=50;DPB=50;DPRA=3.81818;EPP=11.6962;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=0.978261;PAO=0;PQA=0;PQR=0;PRO=0;QA=164;QR=1862;RO=46;RPL=0;RPP=11.6962;RPPR=102.898;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=102.898;SRR=46;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:24,4:24:975:4:164:-6.72106,0,-79.6173 0/0:9:9,0:9:365:0:0:0,-2.70927,-33.2145 0/0:7:7,0:7:281:0:0:0,-2.10721,-25.662 0/0:6:6,0:6:241:0:0:0,-1.80618,-22.0661 dDocent_Contig_6814 30 . G C 430.423 . AB=0.233333;ABP=58.6;AC=2;AF=0.25;AN=8;AO=21;CIGAR=1X;DP=176;DPB=176;DPRA=1.04651;EPP=48.6112;EPPR=337.417;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=798;QR=6108;RO=154;RPL=0;RPP=48.6112;RPPR=337.417;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=154;SRP=337.417;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:46:46,0:46:1814:0:0:0,-13.8474,-163.476 0/0:40:39,0:39:1566:0:0:0,-11.7402,-140.77 0/1:54:37,17:37:1463:17:674:-44.7367,0,-115.661 0/1:36:32,4:32:1265:4:124:-0.623656,0,-103.276 dDocent_Contig_6816 115 . C T 43.1545 . AB=0.152174;ABP=51.3492;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=143;DPB=143;DPRA=1.42268;EPP=18.2106;EPPR=298.331;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=214;QR=4511;RO=136;RPL=0;RPP=18.2106;RPPR=298.331;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=298.331;SRR=136;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:46:39,7:39:1329:7:214:-5.71336,0,-106.062 0/0:52:52,0:52:1708:0:0:0,-15.6536,-153.998 0/0:27:27,0:27:867:0:0:0,-8.12781,-78.3256 0/0:18:18,0:18:607:0:0:0,-5.41854,-54.9484 dDocent_Contig_6818 7 . A G 474.567 . AB=0.264151;ABP=54.2243;AC=1;AF=0.125;AN=8;AO=40;CIGAR=1X;DP=491;DPB=491;DPRA=1.6626;EPP=89.8692;EPPR=978.001;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1263;QR=17154;RO=449;RPL=0;RPP=89.8692;RPPR=978.001;RPR=40;RUN=1;SAF=40;SAP=89.8692;SAR=0;SRF=449;SRP=978.001;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:106:76,28:76:2893:28:889:-48.8546,0,-229.124 0/0:184:176,8:176:6760:8:270:0,-30.7669,-583.669 0/0:119:115,4:115:4378:4:104:0,-26.2089,-384.471 0/0:82:82,0:82:3123:0:0:0,-24.6845,-281.233 dDocent_Contig_6819 98 . N A 1406.35 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=44;CIGAR=3X;DP=44;DPB=44;DPRA=0;EPP=98.5551;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1541;QR=0;RO=0;RPL=44;RPP=98.5551;RPPR=0;RPR=0;RUN=1;SAF=44;SAP=98.5551;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:18:0,18:0:0:18:634:-57.3881,-5.41854,0 1|1:10:0,10:0:0:10:339:-30.8374,-3.0103,0 1|1:8:0,8:0:0:8:283:-25.8126,-2.40824,0 1|1:8:0,8:0:0:8:285:-25.9946,-2.40824,0 dDocent_Contig_6820 60 . C A 298.745 . AB=0.162602;ABP=124.63;AC=3;AF=0.375;AN=8;AO=21;CIGAR=1X;DP=140;DPB=140;DPRA=0;EPP=48.6112;EPPR=261.416;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=0.932773;PAO=0;PQA=0;PQR=0;PRO=0;QA=832;QR=4733;RO=119;RPL=21;RPP=48.6112;RPPR=261.416;RPR=0;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=119;SRP=261.416;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:38:33,5:33:1323:5:193:-6.30019,0,-107.893 0/1:49:39,10:39:1541:10:394:-21.0652,0,-124.183 0/1:36:31,5:31:1243:5:204:-7.90695,0,-101.304 0/0:17:16,1:16:626:1:41:0,-1.02294,-52.5773 dDocent_Contig_6821 107 . N C 82.6553 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:47:-4.46417,-0.60206,0 ./.:.:.:.:.:.:.:. 1/1:1:0,1:0:0:1:35:-3.49863,-0.30103,0 dDocent_Contig_6822 22 . G A 1149.86 . AB=0.174033;ABP=337.105;AC=4;AF=0.5;AN=8;AO=63;CIGAR=1X;DP=362;DPB=362;DPRA=0;EPP=139.813;EPPR=628.512;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=59.7872;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.993243;PAO=0;PQA=0;PQR=0;PRO=0;QA=2543;QR=11892;RO=296;RPL=0;RPP=139.813;RPPR=645.766;RPR=63;RUN=1;SAF=63;SAP=139.813;SAR=0;SRF=294;SRP=628.512;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:123:105,16:105:4217:16:649:-22.0694,0,-342.832 0/1:121:97,24:97:3898:24:969:-51.084,0,-312.384 0/1:84:63,20:63:2536:20:802:-47.2121,0,-203.091 0/1:34:31,3:31:1241:3:123:-1.22977,0,-101.725 dDocent_Contig_6823 22 . C A 75.9976 . AB=0.116883;ABP=101.178;AC=2;AF=0.25;AN=8;AO=34;CIGAR=1X;DP=447;DPB=447;DPRA=0;EPP=76.8404;EPPR=899.828;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.990315;PAO=0;PQA=0;PQR=0;PRO=0;QA=1377;QR=16501;RO=413;RPL=0;RPP=76.8404;RPPR=899.828;RPR=34;RUN=1;SAF=34;SAP=76.8404;SAR=0;SRF=413;SRP=899.828;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:210:196,14:196:7857:14:572:0,-11.3947,-654.872 0/0:160:149,11:149:5954:11:441:0,-8.1191,-495.606 0/1:55:48,7:48:1895:7:283:-9.28635,0,-154.198 0/1:22:20,2:20:795:2:81:-1.06307,0,-65.2457 dDocent_Contig_6824 14 . C T 203.988 . AB=0.138889;ABP=125.337;AC=1;AF=0.125;AN=8;AO=18;CIGAR=2X;DP=336;DPB=336;DPRA=1.19608;EPP=42.0968;EPPR=693.539;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.993711;PAO=0;PQA=0;PQR=0;PRO=0;QA=725;QR=12733;RO=318;RPL=0;RPP=42.0968;RPPR=693.539;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=318;SRP=693.539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:93:93,0:93:3723:0:0:0,-27.9958,-335.078 0|1:108:93,15:93:3741:15:603:-22.0978,0,-304.183 0|0:75:72,3:72:2863:3:122:0,-11.2048,-246.411 0|0:60:60,0:60:2406:0:0:0,-18.0618,-216.691 dDocent_Contig_6825 11 . C G 64.1566 . AB=0.114286;ABP=93.4676;AC=1;AF=0.125;AN=8;AO=8;CIGAR=2X2M;DP=192;DPB=192;DPRA=1.72131;EPP=20.3821;EPPR=385.189;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=308;QR=6957;RO=176;RPL=0;RPP=20.3821;RPPR=385.189;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=176;SRP=385.189;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:70:58,4,8,0:58:2298:4,8,0:162,308,0:-7.8136,-11.9086,-199.857,0,-175.776,-186.727,-25.2733,-201.061,-189.135,-214.42 0|0:67:63,0,0,4:63:2489:0,0,4:0,0,159:0,-18.9649,-223.774,-18.9649,-223.774,-223.774,-5.47818,-210.684,-210.684,-209.48 0|0:40:40,0,0,0:40:1580:0,0,0:0,0,0:0,-12.0412,-142.448,-12.0412,-142.448,-142.448,-12.0412,-142.448,-142.448,-142.448 0|0:15:15,0,0,0:15:590:0,0,0:0,0,0:0,-4.51545,-53.4403,-4.51545,-53.4403,-53.4403,-4.51545,-53.4403,-53.4403,-53.4403 dDocent_Contig_6826 148 . C T 103.492 . AB=0.4;ABP=3.87889;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=87;DPB=87;DPRA=0.38961;EPP=11.6962;EPPR=183.243;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=163;QR=3205;RO=83;RPL=0;RPP=11.6962;RPPR=183.243;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=183.243;SRR=83;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:34:34,0:34:1300:0:0:0,-10.235,-117.248 0/1:10:6,4:6:241:4:163:-12.0481,0,-19.0562 0/0:30:30,0:30:1144:0:0:0,-9.0309,-103.232 0/0:13:13,0:13:520:0:0:0,-3.91339,-47.1424 dDocent_Contig_6827 55 . C T 145.699 . AB=0.225806;ABP=23.254;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=173;DPB=173;DPRA=0.647619;EPP=20.3821;EPPR=361.303;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.969697;PAO=0;PQA=0;PQR=0;PRO=0;QA=315;QR=6469;RO=165;RPL=8;RPP=20.3821;RPPR=361.303;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=165;SRP=361.303;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:24,7:24:930:7:277:-15.9678,0,-74.6714 0/0:47:47,0:47:1869:0:0:0,-14.1484,-168.418 0/0:58:58,0:58:2266:0:0:0,-17.4597,-204.105 0/0:37:36,1:36:1404:1:38:0,-7.34084,-122.815 dDocent_Contig_6828 8 . A T 1921.19 . AB=0.226933;ABP=262.726;AC=2;AF=0.25;AN=8;AO=100;CIGAR=1X;DP=786;DPB=786;DPRA=0.659091;EPP=220.158;EPPR=1492.64;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.998542;PAO=0;PQA=0;PQR=0;PRO=0;QA=3853;QR=26229;RO=686;RPL=0;RPP=220.158;RPPR=1492.64;RPR=100;RUN=1;SAF=100;SAP=220.158;SAR=0;SRF=686;SRP=1492.64;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:264:264,0:264:10145:0:0:0,-79.4719,-912.688 0/1:304:238,66:238:9043:66:2544:-137.643,0,-722.09 0/0:121:112,9:112:4287:9:345:0,-5.0163,-354.494 0/1:97:72,25:72:2754:25:964:-57.8744,0,-218.844 dDocent_Contig_6829 19 . C T 1804.84 . AB=0.025641;ABP=460.356;AC=4;AF=0.5;AN=8;AO=6;CIGAR=1X2M1X3M1D8M;DP=409;DPB=408.688;DPRA=0;EPP=16.0391;EPPR=567.593;GTI=0;LEN=1;MEANALT=7.5;MQM=51;MQMR=60;NS=4;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=235;QR=10195;RO=260;RPL=0;RPP=16.0391;RPPR=567.593;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=260;SRP=567.593;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:125:108,14,0,0,0:108:4210:14,0,0,0:546,0,0,0:-12.4701,0,-341.93,-44.9813,-346.145,-391.027,-44.9813,-346.145,-391.027,-391.027,-44.9813,-346.145,-391.027,-391.027,-391.027 0|1:158:62,42,2,22,17:62:2443:42,2,22,17:1608,80,889,664:-113.284,0,-188.347,-125.409,-194.452,-325.799,-58.6516,-127.697,-253.107,-253.023,-77.3668,-146.411,-271.821,-205.065,-273.241 0|1:76:59,12,4,0,1:59:2317:12,4,0,1:469,155,0,41:-20.7988,0,-186.954,-25.9083,-177.914,-215.268,-38.5596,-190.566,-216.473,-229.125,-35.1743,-187.182,-213.088,-225.741,-225.44 0|1:50:31,16,0,2,0:31:1225:16,0,2,0:617,0,80,0:-41.3291,0,-95.9935,-50.661,-100.81,-151.474,-44.0695,-94.2197,-144.884,-144.282,-50.661,-100.81,-151.474,-144.884,-151.474 dDocent_Contig_6830 137 . G T 181.148 . AB=0.211538;ABP=40.5935;AC=2;AF=0.25;AN=8;AO=14;CIGAR=1X;DP=153;DPB=153;DPRA=0.561404;EPP=33.4109;EPPR=304.845;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=512;QR=4962;RO=139;RPL=0;RPP=33.4109;RPPR=304.845;RPR=14;RUN=1;SAF=0;SAP=33.4109;SAR=14;SRF=0;SRP=304.845;SRR=139;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:57:57,0:57:2042:0:0:0,-17.1587,-184.047 0/0:44:41,3:41:1468:3:107:0,-3.26315,-122.424 0/1:39:31,8:31:1100:8:294:-15.0722,0,-87.5621 0/1:13:10,3:10:352:3:111:-6.44053,0,-28.1018 dDocent_Contig_6831 1 . N G 1716.43 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=49;CIGAR=1X;DP=49;DPB=49;DPRA=0;EPP=109.412;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1885;QR=0;RO=0;RPL=0;RPP=109.412;RPPR=0;RPR=49;RUN=1;SAF=49;SAP=109.412;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:28:0,28:0:0:28:1065:-96.1368,-8.42884,0 1/1:7:0,7:0:0:7:274:-25.0274,-2.10721,0 1/1:10:0,10:0:0:10:383:-34.8181,-3.0103,0 1/1:4:0,4:0:0:4:163:-15.0584,-1.20412,0 dDocent_Contig_6833 16 . T C 3138.13 . AB=0.251546;ABP=263.054;AC=3;AF=0.375;AN=8;AO=122;CIGAR=6M1X1M;DP=485;DPB=470.875;DPRA=0;EPP=267.93;EPPR=606.68;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4839;QR=10685;RO=278;RPL=0;RPP=267.93;RPPR=606.68;RPR=122;RUN=1;SAF=122;SAP=267.93;SAR=0;SRF=278;SRP=606.68;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:156:108,4,0,43:108:4162:4,0,43:119,0,1724:-109.6,-132.619,-473.153,-142.111,-474.357,-483.856,0,-332.314,-341.812,-328.868 0|0:126:43,30,28,24:43:1648:30,28,24:1038,1045,960:-72.6018,-1.21766,-127.436,0,-50.9266,-126.827,-6.45713,-57.3846,-56.171,-134.493 0|1:101:66,12,6,17:66:2545:12,6,17:393,234,675:-35.7227,-23.8732,-229.24,-36.352,-213.617,-243.544,0,-177.283,-189.779,-203.898 0|1:102:61,3,0,38:61:2330:3,0,38:110,0,1480:-103.28,-112.653,-302.914,-121.643,-303.817,-312.808,0,-182.192,-191.183,-179.744 dDocent_Contig_6834 73 . A C 67.69 . AB=0;ABP=0;AC=0;AF=0;AN=8;AO=3;CIGAR=6M1X1M;DP=247;DPB=236.5;DPRA=0.708861;EPP=9.52472;EPPR=493.763;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=113;QR=8506;RO=226;RPL=3;RPP=9.52472;RPPR=493.763;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=226;SRP=493.763;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:79:79,0,0:79:2964:0,0:0,0:0,-23.7814,-266.939,-23.7814,-266.939,-266.939 0|0:71:61,9,0:61:2288:9,0:303,0:-6.43446,0,-185.008,-24.7973,-187.717,-212.261 0|0:56:52,0,3:52:1965:0,3:0,113:0,-15.6536,-176.763,-6.25427,-167.503,-166.6 0|0:41:34,5,0:34:1289:5,0:171,0:-3.73046,0,-104.334,-13.9655,-105.839,-119.714 dDocent_Contig_6835 11 . A G 55.4246 . AB=0.131579;ABP=47.8112;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=173;DPB=173;DPRA=0.844444;EPP=13.8677;EPPR=367.818;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=200;QR=6673;RO=168;RPL=0;RPP=13.8677;RPPR=367.818;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=168;SRP=367.818;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:38:33,5:33:1322:5:200:-6.9404,0,-107.805 0/0:49:49,0:49:1917:0:0:0,-14.7505,-172.732 0/0:43:43,0:43:1721:0:0:0,-12.9443,-155.107 0/0:43:43,0:43:1713:0:0:0,-12.9443,-154.398 dDocent_Contig_6836 17 . G A 1001.59 . AB=0.302013;ABP=53.7411;AC=3;AF=0.375;AN=8;AO=55;CIGAR=1X1M1X;DP=284;DPB=284;DPRA=0;EPP=122.441;EPPR=493.763;GTI=0;LEN=1;MEANALT=1.75;MQM=40;MQMR=49.4204;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.986726;PAO=0;PQA=0;PQR=0;PRO=0;QA=2196;QR=8847;RO=226;RPL=0;RPP=122.441;RPPR=493.763;RPR=55;RUN=1;SAF=55;SAP=122.441;SAR=0;SRF=226;SRP=493.763;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:135:123,10:123:4804:10:399:0,-6.56605,-384.712 0|1:54:45,9:45:1768:9:360:-14.0605,0,-140.624 0|1:65:37,27:37:1433:27:1082:-70.545,0,-107.743 0|1:30:21,9:21:842:9:355:-20.9517,0,-66.0466 dDocent_Contig_6837 8 . A T 5781.48 . AB=0.0528109;ABP=1022.62;AC=0;AF=0;AN=8;AO=31;CIGAR=1X1M2X3M1X3M1X;DP=587;DPB=587;DPRA=0;EPP=70.3259;EPPR=554.564;GTI=0;LEN=1;MEANALT=8.5;MQM=40;MQMR=52.2087;NS=4;NUMALT=3;ODDS=1.11022e-16;PAIRED=1;PAIREDR=0.996063;PAO=0;PQA=0;PQR=0;PRO=0;QA=1217;QR=9896;RO=254;RPL=0;RPP=70.3259;RPPR=554.564;RPR=31;RUN=1;SAF=31;SAP=70.3259;SAR=0;SRF=254;SRP=554.564;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:134:52,1,9,60:52:2051:1,9,60:40,349,2293:-157.755,-170.381,-335.977,-147.386,-310.255,-310.574,0,-162.885,-139.893,-147.851 0|0:196:91,9,0,77:91:3528:9,0,77:350,0,2971:-198.04,-198.813,-483.029,-225.433,-485.738,-512.358,0,-260.311,-286.929,-263.75 0|0:192:74,17,6,74:74:2876:17,6,74:669,234,2889:-198.731,-170.073,-398.689,-203.145,-385.945,-435.071,0,-182.808,-215.878,-211.463 0|0:65:37,4,2,14:37:1441:4,2,14:158,78,552:-31.0199,-30.1375,-142.852,-36.2008,-138.1,-149.515,0,-101.918,-107.979,-109.721 dDocent_Contig_6840 12 . C G 3847.94 . AB=0.105193;ABP=1019.78;AC=1;AF=0.125;AN=8;AO=79;CIGAR=1X2M1X2M1X;DP=751;DPB=750.857;DPRA=0;EPP=174.557;EPPR=1114.8;GTI=0;LEN=1;MEANALT=3.25;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3031;QR=20321;RO=512;RPL=0;RPP=174.557;RPPR=1114.8;RPR=79;RUN=1;SAF=79;SAP=174.557;SAR=0;SRF=512;SRP=1114.8;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:235:147,27,60:147:5830:27,60:1037,2413:-154.604,-113.739,-585.491,0,-394.774,-461.832 0|1:156:134,16,4:134:5345:16,4:623,164:-10.8508,0,-435.354,-37.6492,-426.634,-476.632 0|0:212:147,31,34:147:5822:31,34:1189,1370:-68.6742,-15.3476,-485.18,0,-381.595,-468.945 0|0:148:84,5,57:84:3324:5,57:182,2230:-158.064,-168.489,-440.542,0,-258.732,-256.435 dDocent_Contig_6841 44 . C T 1049.82 . AB=0.192926;ABP=257.729;AC=4;AF=0.5;AN=8;AO=60;CIGAR=1X;DP=311;DPB=311;DPRA=0;EPP=133.299;EPPR=539.399;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.8;PAIREDR=0.928287;PAO=0;PQA=0;PQR=0;PRO=0;QA=2274;QR=9715;RO=251;RPL=0;RPP=133.299;RPPR=539.399;RPR=60;RUN=1;SAF=60;SAP=133.299;SAR=0;SRF=251;SRP=548.05;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:110:84,26:84:3264:26:993:-56.5602,0,-260.752 0/1:95:84,11:84:3238:11:413:-8.92038,0,-262.926 0/1:68:53,15:53:2057:15:571:-31.2583,0,-164.869 0/1:38:30,8:30:1156:8:297:-15.6405,0,-92.8838 dDocent_Contig_6842 11 . A G 495.712 . AB=0.30303;ABP=25.2514;AC=2;AF=0.25;AN=8;AO=22;CIGAR=1X;DP=100;DPB=100;DPRA=3.83333;EPP=50.7827;EPPR=172.385;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=879;QR=3140;RO=78;RPL=0;RPP=50.7827;RPPR=172.385;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=78;SRP=172.385;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:46:28,18:28:1124:18:716:-50.9208,0,-87.5919 0/0:26:24,2:24:963:2:82:0,-0.0471021,-79.1893 0/1:20:18,2:18:730:2:81:-1.66513,0,-60.0037 0/0:8:8,0:8:323:0:0:0,-2.40824,-29.4386 dDocent_Contig_6843 27 . T A 7413.99 . AB=0.143026;ABP=939.403;AC=4;AF=0.5;AN=8;AO=121;CIGAR=1X7M;DP=846;DPB=846;DPRA=0;EPP=265.758;EPPR=754.34;GTI=0;LEN=1;MEANALT=5.5;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=2.22045e-16;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4745;QR=13545;RO=346;RPL=0;RPP=265.758;RPPR=754.34;RPR=121;RUN=1;SAF=121;SAP=265.758;SAR=0;SRF=346;SRP=754.34;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:259:151,40,52,13:151:5941:40,52,13:1563,1991,520:-117.901,-34.8619,-511.519,0,-360.202,-473.04,-120.524,-480.729,-445.863,-605.308 0|1:260:98,69,38,52:98:3824:69,38,52:2702,1499,2012:-192.669,0,-293.555,-98.8381,-190.994,-401.725,-56.943,-149.098,-247.936,-355.614 0|1:212:60,95,13,41:60:2361:95,13,41:3729,515,1630:-288.618,0,-165.618,-264.293,-151.828,-454.594,-172.483,-60.0175,-324.311,-354.356 0|1:115:37,50,12,15:37:1419:50,12,15:1955,418,583:-149.61,0,-101.415,-126.778,-82.4973,-239.619,-112.846,-68.5633,-195.331,-224.787 dDocent_Contig_6844 54 . A G 630.153 . AB=0.346667;ABP=18.3264;AC=3;AF=0.375;AN=8;AO=26;CIGAR=1X;DP=99;DPB=99;DPRA=1.04167;EPP=59.4686;EPPR=161.528;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=999;QR=2819;RO=73;RPL=26;RPP=59.4686;RPPR=161.528;RPR=0;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=73;SRP=161.528;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:43:24,19:24:919:19:724:-52.5385,0,-70.0713 0/0:24:24,0:24:924:0:0:0,-7.22472,-83.4683 0/1:12:10,2:10:392:2:77:-3.69678,0,-32.0256 0/1:20:15,5:15:584:5:198:-12.1759,0,-46.8792 dDocent_Contig_6845 132 . A C 1428.47 . AB=0.191919;ABP=329.477;AC=2;AF=0.25;AN=8;AO=80;CIGAR=1X;DP=516;DPB=516;DPRA=3.86179;EPP=176.728;EPPR=947.601;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.997701;PAO=0;PQA=0;PQR=0;PRO=0;QA=3104;QR=17101;RO=435;RPL=0;RPP=176.728;RPPR=947.601;RPR=80;RUN=1;SAF=0;SAP=176.728;SAR=80;SRF=0;SRP=947.601;SRR=435;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:213:172,40:172:6716:40:1559:-76.3268,0,-539.937 0/1:183:147,36:147:5802:36:1386:-69.9177,0,-466.901 0/0:79:75,4:75:2956:4:159:0,-9.08941,-251.443 0/0:41:41,0:41:1627:0:0:0,-12.3422,-146.663 dDocent_Contig_6846 107 . N G 6500.04 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=214;CIGAR=1X;DP=214;DPB=214;DPRA=0;EPP=467.705;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=7202;QR=0;RO=0;RPL=0;RPP=467.705;RPPR=0;RPR=214;RUN=1;SAF=0;SAP=467.705;SAR=214;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:62:0,62:0:0:62:2064:-186.029,-18.6639,0 1/1:32:0,32:0:0:32:1100:-99.3085,-9.63296,0 1/1:81:0,81:0:0:81:2738:-246.673,-24.3834,0 1/1:39:0,39:0:0:39:1300:-117.295,-11.7402,0 dDocent_Contig_6847 170 . C T 2693.16 . AB=0.330303;ABP=85.5526;AC=4;AF=0.5;AN=8;AO=109;CIGAR=1X;DP=330;DPB=330;DPRA=0;EPP=239.701;EPPR=482.906;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4166;QR=8617;RO=221;RPL=109;RPP=239.701;RPPR=482.906;RPR=0;RUN=1;SAF=0;SAP=239.701;SAR=109;SRF=0;SRP=482.906;SRR=221;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:119:94,25:94:3644:25:913:-46.6255,0,-292.169 0/1:56:46,10:46:1815:10:371:-16.8648,0,-146.709 0/1:103:58,45:58:2261:45:1728:-124.736,0,-172.66 0/1:52:23,29:23:897:29:1154:-88.4878,0,-65.3844 dDocent_Contig_6848 115 . G C 145.439 . AB=0.368421;ABP=5.8675;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X1M1X;DP=96;DPB=96;DPRA=0.74026;EPP=18.2106;EPPR=191.928;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=237;QR=2971;RO=87;RPL=0;RPP=18.2106;RPPR=191.928;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=191.928;SRR=87;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:19:12,7:12:403:7:237:-15.9418,0,-30.8741 0|0:35:34,0:34:1158:0:0:0,-10.235,-104.231 0|0:28:27,0:27:927:0:0:0,-8.12781,-83.6644 0|0:14:14,0:14:483:0:0:0,-4.21442,-43.7992 dDocent_Contig_6849 69 . C T 1126.19 . AB=0.434343;ABP=6.71716;AC=4;AF=0.5;AN=8;AO=43;CIGAR=1X2M1X;DP=99;DPB=99;DPRA=0;EPP=96.3836;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1649;QR=2202;RO=56;RPL=43;RPP=96.3836;RPPR=124.613;RPR=0;RUN=1;SAF=43;SAP=96.3836;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:35:16,19:16:632:19:722:-54.7676,0,-46.6813 0|1:28:16,12:16:623:12:462:-33.4978,0,-47.9765 0|1:27:18,9:18:712:9:348:-23.5509,0,-56.2831 0|1:9:6,3:6:235:3:117:-8.20094,0,-18.8121 dDocent_Contig_6851 38 . T C 5572.18 . AB=0.570093;ABP=16.7088;AC=4;AF=0.5;AN=8;AO=183;CIGAR=1X;DP=321;DPB=321;DPRA=0;EPP=400.39;EPPR=302.673;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7338;QR=5486;RO=138;RPL=0;RPP=400.39;RPPR=302.673;RPR=183;RUN=1;SAF=183;SAP=400.39;SAR=0;SRF=138;SRP=302.673;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:126:31,95:31:1242:95:3779:-302.184,0,-74.1247 0/1:107:65,42:65:2564:42:1701:-121.097,0,-198.68 0/1:65:29,36:29:1169:36:1455:-111.629,0,-85.9214 0/1:23:13,10:13:511:10:403:-29.7058,0,-39.4094 dDocent_Contig_6852 42 . A T 135.18 . AB=0.2;ABP=30.3709;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=86;DPB=86;DPRA=2.05882;EPP=18.2106;EPPR=174.557;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=282;QR=3100;RO=79;RPL=0;RPP=18.2106;RPPR=174.557;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=79;SRP=174.557;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:34:34,0:34:1323:0:0:0,-10.235,-119.34 0/0:11:11,0:11:442:0:0:0,-3.31133,-40.1362 0/1:35:28,7:28:1098:7:282:-15.2169,0,-88.5718 0/0:6:6,0:6:237:0:0:0,-1.80618,-21.7026 dDocent_Contig_6853 12 . A G 31.1274 . AB=0.103896;ABP=107.946;AC=1;AF=0.125;AN=8;AO=15;CIGAR=1X;DP=386;DPB=386;DPRA=0.738889;EPP=35.5824;EPPR=808.627;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=582;QR=14802;RO=371;RPL=0;RPP=35.5824;RPPR=808.627;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=371;SRP=808.627;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:120:120,0:120:4794:0:0:0,-36.1236,-431.346 0/0:138:135,3:135:5387:3:116:0,-30.7251,-473.856 0/1:77:69,8:69:2727:8:307:-4.81114,0,-222.366 0/0:51:47,4:47:1894:4:159:0,-0.660407,-155.97 dDocent_Contig_6855 1 . N A 1539.09 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=43;CIGAR=1X;DP=43;DPB=43;DPRA=0;EPP=96.3836;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1688;QR=0;RO=0;RPL=0;RPP=96.3836;RPPR=0;RPR=43;RUN=1;SAF=43;SAP=96.3836;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:18:0,18:0:0:18:709:-64.136,-5.41854,0 1/1:6:0,6:0:0:6:234:-21.4257,-1.80618,0 1/1:16:0,16:0:0:16:634:-57.3921,-4.81648,0 1/1:3:0,3:0:0:3:111:-10.3531,-0.90309,0 dDocent_Contig_6856 21 . T C 2254.92 . AB=0.195;ABP=487.813;AC=4;AF=0.5;AN=8;AO=117;CIGAR=1X;DP=600;DPB=600;DPRA=0;EPP=257.073;EPPR=1047.49;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4584;QR=17981;RO=481;RPL=0;RPP=257.073;RPPR=1047.49;RPR=117;RUN=1;SAF=117;SAP=257.073;SAR=0;SRF=481;SRP=1047.49;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:182:159,23:159:5960:23:890:-25.6093,0,-481.573 0/1:180:133,46:133:4933:46:1791:-107.154,0,-389.751 0/1:133:108,25:108:4039:25:987:-49.0941,0,-323.559 0/1:105:81,23:81:3049:23:916:-51.0325,0,-242.833 dDocent_Contig_6857 14 . C T 498.086 . AB=0.275362;ABP=33.2536;AC=2;AF=0.25;AN=8;AO=20;CIGAR=1M1X1M;DP=102;DPB=98;DPRA=0;EPP=46.4397;EPPR=144.156;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=797;QR=2615;RO=65;RPL=0;RPP=46.4397;RPPR=144.156;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=65;SRP=144.156;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:39:19,7,5,8:19:770:7,5,8:279,203,322:-20.8188,-3.56444,-64.9535,-9.79468,-50.3181,-71.7875,0,-40.5234,-46.7548,-61.0894 0|1:30:17,2,0,11:17:684:2,0,11:73,0,434:-30.6135,-29.7722,-85.5469,-35.731,-86.1489,-92.1099,0,-50.4458,-56.4052,-53.0939 0|0:20:18,1,0,1:18:725:1,0,1:40,0,41:0,-2.1284,-61.5764,-5.41854,-61.8775,-65.1724,-2.02951,-58.493,-61.788,-61.4869 0|0:13:11,2,0,0:11:436:2,0,0:81,0,0:-3.77234,0,-35.6788,-7.08367,-36.2809,-42.9614,-7.08367,-36.2809,-42.9614,-42.9614 dDocent_Contig_6858 191 . C T 1530.36 . AB=0.312821;ABP=62.3527;AC=4;AF=0.5;AN=8;AO=61;CIGAR=1X;DP=195;DPB=195;DPRA=0;EPP=135.47;EPPR=293.988;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2420;QR=5221;RO=134;RPL=61;RPP=135.47;RPPR=293.988;RPR=0;RUN=1;SAF=0;SAP=135.47;SAR=61;SRF=0;SRP=293.988;SRR=134;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:62:36,26:36:1439:26:1033:-74.5948,0,-111.094 0/1:41:28,13:28:1071:13:516:-34.4401,0,-84.326 0/1:60:46,14:46:1771:14:560:-32.6809,0,-141.549 0/1:32:24,8:24:940:8:311:-18.7185,0,-75.267 dDocent_Contig_6859 18 . C T 322.575 . AB=0.0615385;ABP=111.551;AC=3;AF=0.375;AN=8;AO=4;CIGAR=1M8I11M1X;DP=90;DPB=106.308;DPRA=8.125;EPP=11.6962;EPPR=118.098;GTI=0;LEN=1;MEANALT=7.5;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=99;QR=2080;RO=53;RPL=0;RPP=11.6962;RPPR=118.098;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:46:21,12,2,2:21:819:12,2,2:389,73,55:-25.106,0,-63.8023,-25.4558,-61.4482,-92.2297,-27.0804,-63.0706,-88.4868,-93.8506 0|1:21:15,5,0,0:15:589:5,0,0:184,0,0:-10.5361,0,-46.9695,-15.0515,-48.4746,-63.5142,-15.0515,-48.4746,-63.5142,-63.5142 0|1:19:14,2,0,2:14:554:2,0,2:65,0,44:-1.07936,0,-45.1491,-5.29378,-45.7511,-50.9937,-1.95899,-42.4126,-47.6525,-47.0504 0|0:4:3,0,0,0:3:118:0,0,0:0,0,0:0,-0.90309,-10.837,-0.90309,-10.837,-10.837,-0.90309,-10.837,-10.837,-10.837 dDocent_Contig_6860 131 . C T 196.769 . AB=0.21875;ABP=24.9965;AC=2;AF=0.25;AN=8;AO=7;CIGAR=1X2M1X2M1X;DP=90;DPB=90;DPRA=0.410256;EPP=18.2106;EPPR=163.699;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=257;QR=2678;RO=74;RPL=0;RPP=18.2106;RPPR=163.699;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=163.699;SRR=74;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:39:36,0,3:36:1301:0,3:0,109:0,-10.8371,-117.027,-1.57208,-108.125,-107.222 0|1:18:15,3,0:15:535:3,0:111,0:-4.93528,0,-43.0647,-9.45072,-43.9678,-53.051 0|0:19:14,0,5:14:511:0,5:0,181:-10.9238,-15.1383,-56.891,0,-42.1153,-40.6102 0|1:14:9,4,1:9:331:4,1:146,37:-9.21553,0,-25.8578,-8.89679,-24.0347,-35.6616 dDocent_Contig_6861 33 . C A 342.047 . AB=0.22093;ABP=61.1856;AC=3;AF=0.375;AN=8;AO=20;CIGAR=1X;DP=132;DPB=132;DPRA=0;EPP=46.4397;EPPR=246.215;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=0.6;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=755;QR=4495;RO=112;RPL=0;RPP=46.4397;RPPR=246.215;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=112;SRP=246.215;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:46:45,1:45:1804:1:39:0,-9.95081,-158.67 0/1:55:43,12:43:1723:12:468:-25.9147,0,-138.731 0/1:23:20,3:20:807:3:115:-3.8003,0,-66.0225 0/1:8:4,4:4:161:4:133:-9.88587,0,-12.467 dDocent_Contig_6862 28 . T A 1390 . AB=0.392308;ABP=16.1059;AC=4;AF=0.5;AN=8;AO=51;CIGAR=1X;DP=130;DPB=130;DPRA=0;EPP=113.755;EPPR=174.557;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.974684;PAO=0;PQA=0;PQR=0;PRO=0;QA=2046;QR=3154;RO=79;RPL=0;RPP=113.755;RPPR=174.557;RPR=51;RUN=1;SAF=51;SAP=113.755;SAR=0;SRF=79;SRP=174.557;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:49:25,24:25:989:24:957:-71.6816,0,-74.5597 0/1:44:37,7:37:1473:7:285:-12.7791,0,-119.571 0/1:22:9,13:9:366:13:527:-41.1539,0,-26.6823 0/1:15:8,7:8:326:7:277:-20.7832,0,-25.1942 dDocent_Contig_6863 7 . T C 4144.99 . AB=0.0462633;ABP=505.501;AC=3;AF=0.375;AN=8;AO=13;CIGAR=1X3M;DP=459;DPB=459;DPRA=0;EPP=31.2394;EPPR=396.047;GTI=0;LEN=1;MEANALT=4.33333;MQM=50.6154;MQMR=59.6575;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=492;QR=6966;RO=181;RPL=0;RPP=31.2394;RPPR=396.047;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=181;SRP=396.047;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:178:67,51,0,55:67:2574:51,0,55:1966,0,2211:-162.045,-22.7791,-218.71,-182.214,-234.063,-393.501,0,-51.8519,-211.294,-194.737 0|1:149:70,42,5,30:70:2697:42,5,30:1611,181,1215:-110.993,0,-208.803,-117.362,-206.743,-337.307,-31.8716,-121.257,-238.624,-244.298 0|1:81:29,31,3,17:29:1113:31,3,17:1193,117,678:-88.7221,0,-81.975,-87.8968,-81.7517,-178.304,-41.6116,-35.4664,-123.369,-127.807 0|1:51:15,21,5,6:15:582:21,5,6:792,194,242:-60.1364,0,-41.4834,-48.8584,-32.0129,-95.1613,-44.7001,-27.854,-76.7161,-90.7033 dDocent_Contig_6864 34 . C A 132.237 . AB=0.291667;ABP=12.0581;AC=3;AF=0.375;AN=8;AO=10;CIGAR=1X;DP=68;DPB=68;DPRA=0;EPP=24.725;EPPR=128.956;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.982759;PAO=0;PQA=0;PQR=0;PRO=0;QA=375;QR=2298;RO=58;RPL=0;RPP=24.725;RPPR=128.956;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:44:41,3:41:1621:3:108:0,-3.17326,-136.055 0/1:9:8,1:8:314:1:41:-1.3853,0,-25.913 0/1:11:6,5:6:243:5:185:-13.6926,0,-18.9363 0/1:4:3,1:3:120:1:41:-2.89045,0,-9.98357 dDocent_Contig_6865 28 . C T 741.016 . AB=0.45;ABP=4.31318;AC=3;AF=0.375;AN=8;AO=27;CIGAR=1X;DP=70;DPB=70;DPRA=2;EPP=61.6401;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1072;QR=1728;RO=43;RPL=0;RPP=61.6401;RPPR=96.3836;RPR=27;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:8,9:8:326:9:352:-26.9202,0,-24.5924 0/0:10:10,0:10:406:0:0:0,-3.0103,-36.9 0/1:28:19,9:19:756:9:355:-23.8797,0,-59.9257 0/1:15:6,9:6:240:9:365:-28.6996,0,-17.4596 dDocent_Contig_6866 131 . T C 41.9509 . AB=0.25;ABP=9.52472;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X2M1X;DP=31;DPB=31;DPRA=1.89474;EPP=9.52472;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=35;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=111;QR=1002;RO=28;RPL=0;RPP=9.52472;RPPR=63.8115;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=63.8115;SRR=28;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:12:9,3:9:318:3:111:-5.59295,0,-25.3482 0|0:5:5,0:5:182:0:0:0,-1.50515,-16.7352 0|0:8:8,0:8:285:0:0:0,-2.40824,-25.9942 0|0:6:6,0:6:217:0:0:0,-1.80618,-19.8815 dDocent_Contig_6867 34 . C T 128.5 . AB=0.126316;ABP=118.235;AC=2;AF=0.25;AN=8;AO=12;CIGAR=1X;DP=198;DPB=198;DPRA=0.92233;EPP=29.068;EPPR=406.904;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.844086;PAO=0;PQA=0;PQR=0;PRO=0;QA=475;QR=7418;RO=186;RPL=0;RPP=29.068;RPPR=406.904;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=186;SRP=406.904;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:36:36,0:36:1414:0:0:0,-10.8371,-127.51 0/0:67:67,0:67:2677:0:0:0,-20.169,-241.054 0/1:59:50,9:50:1992:9:355:-14.5465,0,-161.714 0/1:36:33,3:33:1335:3:120:-0.350822,0,-109.572 dDocent_Contig_6868 81 . A G 511.316 . AB=0.540541;ABP=3.5385;AC=2;AF=0.25;AN=8;AO=21;CIGAR=1X;DP=122;DPB=122;DPRA=0.765766;EPP=48.6112;EPPR=222.329;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=759;QR=3684;RO=101;RPL=21;RPP=48.6112;RPPR=222.329;RPR=0;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=101;SRP=222.329;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:48:47,1:47:1709:1:37:0,-10.7516,-150.389 0/0:37:37,0:37:1356:0:0:0,-11.1381,-122.338 0/1:19:8,11:8:299:11:397:-30.3523,0,-21.5464 0/1:18:9,9:9:320:9:325:-24.1771,0,-23.7218 dDocent_Contig_6869 35 . G T 130.785 . AB=0.106796;ABP=279.652;AC=3;AF=0.375;AN=8;AO=25;CIGAR=1X;DP=381;DPB=381;DPRA=0;EPP=57.2971;EPPR=776.054;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=972;QR=13672;RO=356;RPL=0;RPP=57.2971;RPPR=776.054;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=356;SRP=776.054;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:175:172,3:172:6629:3:120:0,-41.4923,-585.25 0/1:164:146,18:146:5580:18:709:-14.7693,0,-452.744 0/1:31:28,3:28:1082:3:102:-0.181387,0,-88.3458 0/1:11:10,1:10:381:1:41:-0.783237,0,-31.3297 dDocent_Contig_6871 15 . C A 4182.76 . AB=0.621005;ABP=30.8627;AC=3;AF=0.375;AN=8;AO=138;CIGAR=1X;DP=256;DPB=256;DPRA=0;EPP=302.673;EPPR=257.073;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5514;QR=4739;RO=117;RPL=0;RPP=302.673;RPPR=257.073;RPR=138;RUN=1;SAF=138;SAP=302.673;SAR=0;SRF=117;SRP=257.073;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:80:7,73:7:286:73:2924:-239.174,0,-2.03242 0/1:94:50,43:50:2014:43:1720:-126.63,0,-153.041 0/1:45:25,20:25:1010:20:789:-57.7796,0,-77.6461 0/0:37:35,2:35:1429:2:81:0,-3.45238,-121.167 dDocent_Contig_6872 54 . T G 146.247 . AB=0;ABP=0;AC=2;AF=0.25;AN=8;AO=6;CIGAR=1X;DP=47;DPB=47;DPRA=0.972222;EPP=16.0391;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.853659;PAO=0;PQA=0;PQR=0;PRO=0;QA=237;QR=1653;RO=41;RPL=6;RPP=16.0391;RPPR=92.0407;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:14:13,1:13:524:1:41:0,-0.119853,-43.4112 0/0:12:12,0:12:489:0:0:0,-3.61236,-44.3613 0/0:17:16,1:16:640:1:41:0,-1.02294,-53.8372 1/1:4:0,4:0:0:4:155:-14.3227,-1.20412,0 dDocent_Contig_6873 10 . T A 835.277 . AB=0.382716;ABP=12.6881;AC=3;AF=0.375;AN=8;AO=32;CIGAR=1X;DP=125;DPB=125;DPRA=0;EPP=72.4974;EPPR=204.957;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.8125;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1287;QR=3707;RO=93;RPL=0;RPP=72.4974;RPPR=204.957;RPR=32;RUN=1;SAF=32;SAP=72.4974;SAR=0;SRF=93;SRP=204.957;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:23,13:23:920:13:520:-36.3095,0,-72.2686 0/0:44:43,1:43:1716:1:40:0,-9.24964,-150.667 0/1:32:18,14:18:714:14:563:-41.3796,0,-54.9474 0/1:13:9,4:9:357:4:164:-11.2365,0,-28.5734 dDocent_Contig_6874 15 . C T 321.427 . AB=0.225352;ABP=49.5287;AC=3;AF=0.375;AN=8;AO=16;CIGAR=1X;DP=79;DPB=79;DPRA=2.95833;EPP=37.7539;EPPR=139.813;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=642;QR=2524;RO=63;RPL=0;RPP=37.7539;RPPR=139.813;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=63;SRP=139.813;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:8:8,0:8:327:0:0:0,-2.40824,-29.8001 0/1:47:36,11:36:1431:11:442:-25.9851,0,-114.895 0/1:16:13,3:13:524:3:119:-6.27802,0,-42.6912 0/1:8:6,2:6:242:2:81:-5.27749,0,-19.7491 dDocent_Contig_6875 40 . T C 113.123 . AB=0.157895;ABP=60.9543;AC=3;AF=0.375;AN=8;AO=9;CIGAR=1M2I3M1X;DP=58;DPB=61.6;DPRA=19;EPP=22.5536;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=353;QR=1935;RO=49;RPL=0;RPP=22.5536;RPPR=109.412;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:22:20,2:20:798:2:81:-1.06307,0,-65.5172 0|1:22:18,4:18:720:4:155:-7.70081,0,-58.5037 0|1:13:10,3:10:382:3:117:-6.99652,0,-30.8188 0|0:1:1,0:1:35:0:0:0,-0.30103,-3.49863 dDocent_Contig_6876 7 . T C 304.234 . AB=0.217949;ABP=56.9074;AC=2;AF=0.25;AN=8;AO=19;CIGAR=1X;DP=149;DPB=149;DPRA=1.82609;EPP=44.2683;EPPR=285.302;GTI=0;LEN=1;MEANALT=1;MQM=59.6842;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.423077;PAO=0;PQA=0;PQR=0;PRO=0;QA=707;QR=4941;RO=130;RPL=0;RPP=44.2683;RPPR=285.302;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=130;SRP=285.302;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:42:32,10:32:1218:10:360:-20.0836,0,-97.271 0/1:36:29,7:29:1119:7:269:-13.7378,0,-90.1758 0/0:48:46,2:46:1741:2:78:0,-7.04597,-149.546 0/0:23:23,0:23:863:0:0:0,-6.92369,-77.9901 dDocent_Contig_6877 19 . G A 352.428 . AB=0.165414;ABP=132.335;AC=3;AF=0.375;AN=8;AO=22;CIGAR=1X;DP=140;DPB=140;DPRA=6.33333;EPP=50.7827;EPPR=259.244;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.974576;PAO=0;PQA=0;PQR=0;PRO=0;QA=883;QR=4686;RO=118;RPL=0;RPP=50.7827;RPPR=259.244;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=118;SRP=259.244;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:39:33,6:33:1317:6:244:-10.5987,0,-107.057 0/1:63:50,13:50:1956:13:517:-27.9124,0,-157.283 0/1:31:28,3:28:1127:3:122:-2.04056,0,-92.38 0/0:7:7,0:7:286:0:0:0,-2.10721,-26.1148 dDocent_Contig_6878 53 . A G 164.695 . AB=0.208333;ABP=38.4777;AC=3;AF=0.375;AN=8;AO=10;CIGAR=1X;DP=76;DPB=76;DPRA=0.571429;EPP=24.725;EPPR=137.773;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.924242;PAO=0;PQA=0;PQR=0;PRO=0;QA=391;QR=2557;RO=66;RPL=10;RPP=24.725;RPPR=146.327;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=65;SRP=137.773;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:28:28,0:28:1086:0:0:0,-8.42884,-98.0267 0/1:20:15,5:15:588:5:203:-12.6325,0,-47.2379 0/1:19:16,3:16:607:3:107:-4.25783,0,-49.2375 0/1:9:7,2:7:276:2:81:-4.97646,0,-22.4981 dDocent_Contig_6879 35 . A G 338.931 . AB=0.225352;ABP=49.5287;AC=2;AF=0.333333;AN=6;AO=16;CIGAR=1X;DP=117;DPB=117;DPRA=0.771739;EPP=37.7539;EPPR=222.329;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=645;QR=4029;RO=101;RPL=0;RPP=37.7539;RPPR=222.329;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=101;SRP=222.329;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 0/0:46:46,0:46:1841:0:0:0,-13.8474,-165.896 0/1:32:21,11:21:837:11:441:-30.4121,0,-66.0066 0/1:39:34,5:34:1351:5:204:-7.00386,0,-110.108 dDocent_Contig_6881 112 . T G 32.0227 . AB=0.148148;ABP=32.0437;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=56;DPB=56;DPRA=1.86207;EPP=11.6962;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.75;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=139;QR=1768;RO=52;RPL=0;RPP=11.6962;RPPR=115.927;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=115.927;SRR=52;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:23,4:23:785:4:139:-4.72488,0,-62.8385 0/0:13:13,0:13:449:0:0:0,-3.91339,-40.7407 0/0:16:16,0:16:534:0:0:0,-4.81648,-48.377 ./.:.:.:.:.:.:.:. dDocent_Contig_6882 15 . C T 698.99 . AB=0.188119;ABP=88.3427;AC=1;AF=0.125;AN=8;AO=19;CIGAR=1X1M2X3M1X1M2X;DP=101;DPB=101;DPRA=0;EPP=44.2683;EPPR=115.927;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=742;QR=2049;RO=52;RPL=0;RPP=44.2683;RPPR=115.927;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:40:19,7,0,14:19:749:7,0,14:269,0,546:-39.1602,-22.8003,-82.3194,-44.8798,-84.4266,-106.507,0,-39.5524,-61.6311,-57.4167 0|0:27:12,6,2,7:12:476:6,2,7:235,79,278:-19.0062,-3.29516,-40.6747,-16.1172,-35.9799,-54.701,0,-19.8637,-32.6853,-37.0791 0|0:27:18,3,0,5:18:706:3,0,5:120,0,192:-10.3319,-5.8613,-63.022,-15.7504,-63.9251,-73.8113,0,-48.1663,-58.0525,-56.5474 0|1:7:3,3,0,1:3:118:3,0,1:118,0,40:-8.79862,0,-8.79862,-9.70171,-9.70171,-19.4077,-6.40498,-6.40498,-16.1117,-15.8106 dDocent_Contig_6883 20 . A G 233.678 . AB=0.137681;ABP=160.363;AC=2;AF=0.25;AN=8;AO=20;CIGAR=1X;DP=233;DPB=233;DPRA=0.792271;EPP=46.4397;EPPR=465.534;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.7;PAIREDR=0.938967;PAO=0;PQA=0;PQR=0;PRO=0;QA=791;QR=8377;RO=213;RPL=0;RPP=46.4397;RPPR=465.534;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=213;SRP=465.534;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:67:55,12:55:2123:12:472:-22.6583,0,-171.095 0/1:71:64,7:64:2509:7:279:-4.10664,0,-204.579 0/0:69:69,0:69:2742:0:0:0,-20.7711,-246.907 0/0:26:25,1:25:1003:1:40:0,-3.8311,-86.5731 dDocent_Contig_6884 109 . A G 239.177 . AB=0.231884;ABP=46.0936;AC=3;AF=0.375;AN=8;AO=23;CIGAR=1X;DP=146;DPB=146;DPRA=0;EPP=52.9542;EPPR=270.101;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=788;QR=4160;RO=123;RPL=0;RPP=52.9542;RPPR=270.101;RPR=23;RUN=1;SAF=0;SAP=52.9542;SAR=23;SRF=0;SRP=270.101;SRR=123;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:23,4:23:769:4:134:-4.26307,0,-61.3921 0/0:77:70,7:70:2361:7:243:0,-0.970424,-190.545 0/1:39:28,11:28:961:11:376:-22.4296,0,-75.062 0/1:3:2,1:2:69:1:35:-2.59554,0,-5.64957 dDocent_Contig_6885 20 . A T 719.877 . AB=0.244275;ABP=77.4205;AC=1;AF=0.125;AN=8;AO=32;CIGAR=1M5I5M1X1M;DP=331;DPB=361.5;DPRA=1.965;EPP=72.4974;EPPR=602.337;GTI=0;LEN=1;MEANALT=3;MQM=59.4688;MQMR=59.9167;NS=4;NUMALT=2;ODDS=1.38778e-17;PAIRED=0.96875;PAIREDR=0.891304;PAO=0;PQA=0;PQR=0;PRO=0;QA=1181;QR=10935;RO=276;RPL=0;RPP=72.4974;RPPR=602.337;RPR=32;RUN=1;SAF=32;SAP=72.4974;SAR=0;SRF=276;SRP=602.337;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:131:77,21,32:77:3044:21,32:745,1181:-73.3857,-35.9102,-280.102,0,-189.873,-240.893 0|0:121:120,0,0:120:4770:0,0:0,0:0,-36.1236,-428.835,-36.1236,-428.835,-428.835 0|0:51:51,0,0:51:2029:0,0:0,0:0,-15.3525,-182.813,-15.3525,-182.813,-182.813 0|0:28:28,0,0:28:1092:0,0:0,0:0,-8.42884,-98.4445,-8.42884,-98.4445,-98.4445 dDocent_Contig_6886 50 . T C 95.9662 . AB=0.153846;ABP=57.1301;AC=2;AF=0.25;AN=8;AO=10;CIGAR=1X;DP=120;DPB=120;DPRA=2.33333;EPP=24.725;EPPR=233.265;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=392;QR=4321;RO=110;RPL=10;RPP=24.725;RPPR=233.265;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=110;SRP=241.872;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:42:37,5:37:1430:5:194:-5.18725,0,-116.305 0/0:53:51,2:51:2034:2:82:0,-8.17491,-175.469 0/1:10:7,3:7:284:3:116:-7.80724,0,-22.9237 0/0:15:15,0:15:573:0:0:0,-4.51545,-51.8882 dDocent_Contig_6888 19 . T C 130.168 . AB=0.3;ABP=9.95901;AC=2;AF=0.25;AN=8;AO=6;CIGAR=1X1M1X;DP=59;DPB=59;DPRA=0.512821;EPP=16.0391;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.981132;PAO=0;PQA=0;PQR=0;PRO=0;QA=243;QR=2116;RO=53;RPL=0;RPP=16.0391;RPPR=118.098;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:19:19,0:19:757:0:0:0,-5.71957,-68.4536 0|0:20:20,0:20:801:0:0:0,-6.0206,-72.4076 0|1:14:9,5:9:362:5:205:-14.6206,0,-28.7303 0|1:6:5,1:5:196:1:38:-1.99109,0,-16.209 dDocent_Contig_6889 81 . T C 94.3561 . AB=0.141509;ABP=121.335;AC=3;AF=0.375;AN=8;AO=16;CIGAR=1X;DP=132;DPB=132;DPRA=0;EPP=37.7539;EPPR=254.901;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=543;QR=3745;RO=116;RPL=16;RPP=37.7539;RPPR=254.901;RPR=0;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=116;SRP=254.901;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:7:5,2:5:166:2:70:-4.54019,0,-13.1605 0/0:26:25,1:25:796:1:35:0,-4.32815,-68.4397 0/1:54:48,6:48:1554:6:209:-2.89543,0,-123.891 0/1:45:38,7:38:1229:7:229:-7.38403,0,-97.3562 dDocent_Contig_6890 17 . G A 364.184 . AB=0.280702;ABP=26.8203;AC=3;AF=0.375;AN=8;AO=16;CIGAR=1X;DP=60;DPB=60;DPRA=6.33333;EPP=37.7539;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=642;QR=1764;RO=44;RPL=0;RPP=37.7539;RPPR=98.5551;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:18,7:18:721:7:278:-17.8635,0,-57.6811 0/1:26:18,8:18:723:8:323:-21.6118,0,-57.5669 0/1:6:5,1:5:198:1:41:-2.28839,0,-16.3888 0/0:3:3,0:3:122:0:0:0,-0.90309,-11.3725 dDocent_Contig_6891 95 . A G 119.881 . AB=0.4;ABP=4.31318;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=37;DPB=37;DPRA=1.36364;EPP=16.0391;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=57.0323;NS=3;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=0.935484;PAO=0;PQA=0;PQR=0;PRO=0;QA=200;QR=1092;RO=31;RPL=0;RPP=16.0391;RPPR=70.3259;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=70.3259;SRR=31;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:14:14,0:14:502:0:0:0,-4.21442,-41.5238 0/1:15:9,6:9:305:6:200:-13.812,0,-23.2625 ./.:.:.:.:.:.:.:. 0/0:8:8,0:8:285:0:0:0,-2.40824,-25.9943 dDocent_Contig_6892 12 . G T 240.335 . AB=0.297297;ABP=16.2152;AC=3;AF=0.375;AN=8;AO=11;CIGAR=1X;DP=53;DPB=53;DPRA=0.770833;EPP=26.8965;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=438;QR=1650;RO=42;RPL=0;RPP=26.8965;RPPR=94.2121;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:16:16,0:16:631:0:0:0,-4.81648,-57.1189 0/1:11:7,4:7:279:4:161:-11.5642,0,-22.1693 0/1:12:8,4:8:321:4:160:-11.1714,0,-25.6446 0/1:14:11,3:11:419:3:117:-6.69579,0,-33.8391 dDocent_Contig_6893 34 . C T 421.061 . AB=0.273973;ABP=35.4039;AC=3;AF=0.375;AN=8;AO=21;CIGAR=1X;DP=117;DPB=117;DPRA=0;EPP=48.6112;EPPR=211.472;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=798;QR=3783;RO=96;RPL=0;RPP=48.6112;RPPR=211.472;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=96;SRP=211.472;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:44:43,1:43:1699:1:38:0,-9.44805,-149.343 0/1:39:27,12:27:1053:12:462:-30.1875,0,-83.3224 0/1:24:18,6:18:713:6:221:-13.0181,0,-57.2729 0/1:10:8,2:8:318:2:77:-4.2979,0,-25.9755 dDocent_Contig_6894 72 . T C 127.982 . AB=0.146341;ABP=92.0936;AC=3;AF=0.375;AN=8;AO=12;CIGAR=1M1I1M1X;DP=90;DPB=94;DPRA=3.41667;EPP=29.068;EPPR=172.385;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.987179;PAO=0;PQA=0;PQR=0;PRO=0;QA=455;QR=2873;RO=78;RPL=12;RPP=29.068;RPPR=172.385;RPR=0;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=78;SRP=172.385;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:8:8,0:8:286:0:0:0,-2.40824,-26.0803 0|1:31:25,6:25:916:6:224:-11.1859,0,-73.4206 0|1:31:27,4:27:992:4:155:-4.99351,0,-80.2559 0|1:20:18,2:18:679:2:76:-1.19407,0,-55.4211 dDocent_Contig_6895 7 . T G 1541.48 . AB=0.3379;ABP=52.9938;AC=4;AF=0.5;AN=8;AO=74;CIGAR=2X;DP=219;DPB=219;DPRA=0;EPP=163.699;EPPR=309.188;GTI=0;LEN=1;MEANALT=1.75;MQM=58.027;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.905405;PAIREDR=0.957447;PAO=0;PQA=0;PQR=0;PRO=0;QA=2519;QR=5373;RO=141;RPL=0;RPP=163.699;RPPR=309.188;RPR=74;RUN=1;SAF=74;SAP=163.699;SAR=0;SRF=141;SRP=309.188;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:44:24,18:24:921:18:627:-43.695,0,-70.2251 0|1:60:47,12:47:1785:12:414:-18.9962,0,-142.806 0|1:60:34,25:34:1300:25:837:-57.4722,0,-99.3125 0|1:55:36,19:36:1367:19:641:-41.3821,0,-106.757 dDocent_Contig_6896 182 . G A 77.1784 . AB=0.208333;ABP=20.744;AC=2;AF=0.25;AN=8;AO=6;CIGAR=1X;DP=49;DPB=49;DPRA=1.15152;EPP=16.0391;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=234;QR=1691;RO=43;RPL=6;RPP=16.0391;RPPR=96.3836;RPR=0;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=96.3836;SRR=43;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:16,4:16:613:4:154:-8.21107,0,-49.4826 0/0:14:13,1:13:517:1:39:0,-0.317855,-42.9808 0/1:4:3,1:3:123:1:41:-2.89045,0,-10.2607 0/0:11:11,0:11:438:0:0:0,-3.31133,-39.7748 dDocent_Contig_6897 16 . G A 77.4065 . AB=0.16129;ABP=33.9012;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=95;DPB=95;DPRA=1.4359;EPP=16.0391;EPPR=196.271;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.833333;PAIREDR=0.685393;PAO=0;PQA=0;PQR=0;PRO=0;QA=242;QR=3567;RO=89;RPL=0;RPP=16.0391;RPPR=196.271;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=89;SRP=196.271;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:26,5:26:1046:5:201:-9.13859,0,-85.0988 0/0:25:24,1:24:970:1:41:0,-3.43118,-83.5028 0/0:26:26,0:26:1034:0:0:0,-7.82678,-93.3528 0/0:13:13,0:13:517:0:0:0,-3.91339,-46.8726 dDocent_Contig_6898 137 . C T 98.3873 . AB=0.384615;ABP=4.51363;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=83;DPB=83;DPRA=0.557143;EPP=13.8677;EPPR=172.385;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=168;QR=2660;RO=78;RPL=0;RPP=13.8677;RPPR=172.385;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=172.385;SRR=78;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:39:39,0:39:1329:0:0:0,-11.7402,-119.907 0/0:27:27,0:27:910:0:0:0,-8.12781,-82.2058 0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9449 0/1:13:8,5:8:281:5:168:-11.5376,0,-21.715 dDocent_Contig_6899 81 . T C 979.976 . AB=0.381356;ABP=17.4377;AC=4;AF=0.5;AN=8;AO=45;CIGAR=1X;DP=118;DPB=118;DPRA=0;EPP=100.727;EPPR=161.528;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.533333;PAIREDR=0.534247;PAO=0;PQA=0;PQR=0;PRO=0;QA=1551;QR=2529;RO=73;RPL=45;RPP=100.727;RPPR=161.528;RPR=0;RUN=1;SAF=45;SAP=100.727;SAR=0;SRF=73;SRP=161.528;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:17,10:17:594:10:350:-23.7097,0,-45.6607 0/1:38:23,15:23:800:15:524:-36.0518,0,-60.8812 0/1:43:29,14:29:995:14:471:-29.7677,0,-76.9151 0/1:10:4,6:4:140:6:206:-15.8663,0,-9.93463 dDocent_Contig_6900 59 . G A 351.32 . AB=0.666667;ABP=7.35324;AC=1;AF=0.166667;AN=6;AO=12;CIGAR=1X;DP=45;DPB=45;DPRA=1.33333;EPP=29.068;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=467;QR=1277;RO=33;RPL=12;RPP=29.068;RPPR=74.6689;RPR=0;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:16:16,0:16:609:0:0:0,-4.81648,-55.1319 0/1:18:6,12:6:227:12:467:-36.956,0,-15.3691 0/0:11:11,0:11:441:0:0:0,-3.31133,-40.0448 ./.:.:.:.:.:.:.:. dDocent_Contig_6901 18 . C T 136.984 . AB=0.2;ABP=30.3709;AC=1;AF=0.125;AN=8;AO=7;CIGAR=5M1X5M;DP=143;DPB=143.909;DPRA=0.972222;EPP=18.2106;EPPR=293.988;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.992537;PAO=0;PQA=0;PQR=0;PRO=0;QA=284;QR=5298;RO=134;RPL=0;RPP=18.2106;RPPR=293.988;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=134;SRP=293.988;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:55:55,0,0:55:2184:0,0:0,0:0,-16.5566,-196.746,-16.5566,-196.746,-196.746 0|1:35:28,0,7:28:1103:0,7:0,284:-15.3974,-23.8262,-114.555,0,-91.1317,-89.0245 0|0:39:37,2,0:37:1455:2,0:81,0:0,-4.05444,-123.524,-11.1381,-124.126,-130.806 0|0:14:14,0,0:14:556:0,0:0,0:0,-4.21442,-50.3845,-4.21442,-50.3845,-50.3845 dDocent_Contig_6902 58 . T G 147.591 . AB=0.375;ABP=5.18177;AC=1;AF=0.125;AN=8;AO=6;CIGAR=2X1M2X1M2X;DP=44;DPB=44;DPRA=1.71429;EPP=16.0391;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.973684;PAO=0;PQA=0;PQR=0;PRO=0;QA=229;QR=1479;RO=38;RPL=6;RPP=16.0391;RPPR=85.5263;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:16:10,6:10:374:6:229:-16.157,0,-29.1883 0|0:13:13,0:13:512:0:0:0,-3.91339,-46.4276 0|0:10:10,0:10:397:0:0:0,-3.0103,-36.0901 0|0:5:5,0:5:196:0:0:0,-1.50515,-18.0152 dDocent_Contig_6903 78 . A G 85.7669 . AB=0.24;ABP=17.6895;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=144;DPB=144;DPRA=0.630252;EPP=16.0391;EPPR=302.673;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=191;QR=5229;RO=138;RPL=6;RPP=16.0391;RPPR=302.673;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=138;SRP=302.673;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:19,6:19:717:6:191:-9.97463,0,-57.3313 0/0:46:46,0:46:1768:0:0:0,-13.8474,-159.375 0/0:64:64,0:64:2413:0:0:0,-19.2659,-217.38 0/0:9:9,0:9:331:0:0:0,-2.70927,-30.1407 dDocent_Contig_6904 7 . T C 1379.39 . AB=0.419355;ABP=10.015;AC=4;AF=0.5;AN=8;AO=52;CIGAR=1X;DP=124;DPB=124;DPRA=0;EPP=115.927;EPPR=159.356;GTI=0;LEN=1;MEANALT=1;MQM=58.9231;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.826923;PAIREDR=0.819444;PAO=0;PQA=0;PQR=0;PRO=0;QA=2008;QR=2733;RO=72;RPL=0;RPP=115.927;RPPR=159.356;RPR=52;RUN=1;SAF=52;SAP=115.927;SAR=0;SRF=72;SRP=159.356;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:9,19:9:340:19:736:-58.1425,0,-22.5247 0/1:46:28,18:28:1074:18:690:-48.5849,0,-83.1177 0/1:30:17,13:17:654:13:504:-36.5843,0,-50.1657 0/1:20:18,2:18:665:2:78:-1.38287,0,-54.156 dDocent_Contig_6905 64 . T C 142.774 . AB=0.18;ABP=47.4821;AC=2;AF=0.25;AN=8;AO=10;CIGAR=1X;DP=83;DPB=83;DPRA=2.43333;EPP=24.725;EPPR=161.528;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.821918;PAO=0;PQA=0;PQR=0;PRO=0;QA=396;QR=2449;RO=73;RPL=10;RPP=24.725;RPPR=161.528;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=73;SRP=161.528;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:10:10,0:10:330:0:0:0,-3.0103,-30.0191 0/1:34:27,7:27:935:7:277:-15.0613,0,-74.2191 0/1:16:14,2:14:446:2:78:-2.58682,0,-35.629 0/0:23:22,1:22:738:1:41:0,-2.82912,-62.6311 dDocent_Contig_6906 75 . T C 56.4465 . AB=0.3;ABP=6.48466;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=93;DPB=93;DPRA=0.361446;EPP=9.52472;EPPR=198.443;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=111;QR=3253;RO=90;RPL=3;RPP=9.52472;RPPR=198.443;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=90;SRP=198.443;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:28:28,0:28:1024:0:0:0,-8.42884,-92.4742 0/0:39:39,0:39:1422:0:0:0,-11.7402,-128.275 0/0:16:16,0:16:554:0:0:0,-4.81648,-50.1818 0/1:10:7,3:7:253:3:111:-7.34362,0,-20.109 dDocent_Contig_6908 19 . T C 5198.95 . AB=0.554839;ABP=11.1078;AC=4;AF=0.5;AN=8;AO=172;CIGAR=1X;DP=310;DPB=310;DPRA=0;EPP=376.504;EPPR=302.673;GTI=0;LEN=1;MEANALT=1;MQM=59.8605;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.976744;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6886;QR=5507;RO=138;RPL=0;RPP=376.504;RPPR=302.673;RPR=172;RUN=1;SAF=172;SAP=376.504;SAR=0;SRF=138;SRP=302.673;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:108:59,49:59:2321:49:1974:-145.342,0,-176.531 0/1:113:46,67:46:1846:67:2654:-204.96,0,-132.329 0/1:67:22,45:22:890:45:1817:-143.568,0,-60.2374 0/1:22:11,11:11:450:11:441:-33.423,0,-34.2331 dDocent_Contig_6909 94 . C G 61.9794 . AB=0.5;ABP=3.0103;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=66;DPB=66;DPRA=0.3;EPP=9.52472;EPPR=139.813;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=104;QR=2233;RO=63;RPL=3;RPP=9.52472;RPPR=3.32051;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=30;SRP=3.32051;SRR=33;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:24:24,0:24:859:0:0:0,-7.22472,-77.6265 0/1:6:3,3:3:115:3:104:-7.89691,0,-8.91871 0/0:22:22,0:22:801:0:0:0,-6.62266,-72.4126 0/0:14:14,0:14:458:0:0:0,-4.21442,-41.5239 dDocent_Contig_6910 167 . A C 117.227 . AB=0.212121;ABP=26.7649;AC=3;AF=0.375;AN=8;AO=7;CIGAR=1X;DP=45;DPB=45;DPRA=0.916667;EPP=18.2106;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=46.7143;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=278;QR=1471;RO=38;RPL=7;RPP=18.2106;RPPR=85.5263;RPR=0;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=85.5263;SRR=38;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:11,3:11:421:3:120:-6.72376,0,-34.0219 0/0:12:12,0:12:482:0:0:0,-3.61236,-43.7318 0/1:11:10,1:10:384:1:40:-0.609668,0,-31.5972 0/1:8:5,3:5:184:3:118:-8.39246,0,-14.506 dDocent_Contig_6911 73 . T C 982.266 . AB=0.439024;ABP=5.65844;AC=3;AF=0.375;AN=8;AO=36;CIGAR=1X;DP=88;DPB=88;DPRA=4.55556;EPP=81.1833;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1414;QR=1980;RO=52;RPL=36;RPP=81.1833;RPPR=115.927;RPR=0;RUN=1;SAF=36;SAP=81.1833;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:40:17,23:17:664:23:903:-69.5414,0,-48.0537 0/1:29:24,5:24:900:5:193:-9.01041,0,-72.579 0/1:13:5,8:5:184:8:318:-25.0727,0,-13.0022 0/0:6:6,0:6:232:0:0:0,-1.80618,-21.2475 dDocent_Contig_6912 32 . T C 69.6908 . AB=0.132075;ABP=65.3275;AC=2;AF=0.25;AN=8;AO=7;CIGAR=1X;DP=141;DPB=141;DPRA=0.602273;EPP=18.2106;EPPR=293.988;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=0.714286;PAIREDR=0.970149;PAO=0;PQA=0;PQR=0;PRO=0;QA=283;QR=5296;RO=134;RPL=0;RPP=18.2106;RPPR=293.988;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=134;SRP=293.988;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:32:32,0:32:1273:0:0:0,-9.63296,-114.841 0/0:56:56,0:56:2183:0:0:0,-16.8577,-196.637 0/1:31:28,3:28:1107:3:123:-2.13286,0,-90.5837 0/1:22:18,4:18:733:4:160:-8.16077,0,-59.671 dDocent_Contig_6913 151 . C A 591.541 . AB=0.298851;ABP=33.5856;AC=3;AF=0.375;AN=8;AO=28;CIGAR=1X;DP=114;DPB=114;DPRA=0;EPP=63.8115;EPPR=189.757;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1074;QR=3170;RO=86;RPL=0;RPP=63.8115;RPPR=189.757;RPR=28;RUN=1;SAF=0;SAP=63.8115;SAR=28;SRF=0;SRP=189.757;SRR=86;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:40:26,14:26:927:14:540:-36.9022,0,-71.692 0/1:44:34,10:34:1264:10:379:-21.2168,0,-100.803 0/0:27:25,2:25:944:2:78:0,-0.724337,-77.8651 0/1:3:1,2:1:35:2:77:-6.40605,0,-2.59554 dDocent_Contig_6914 98 . N A 329.808 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=11;CIGAR=1X;DP=11;DPB=11;DPRA=0;EPP=26.8965;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=356;QR=0;RO=0;RPL=11;RPP=26.8965;RPPR=0;RPR=0;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:6:0,6:0:0:6:189:-17.3205,-1.80618,0 1/1:5:0,5:0:0:5:167:-15.3592,-1.50515,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_6915 12 . T C 340.347 . AB=0.325581;ABP=14.3727;AC=4;AF=0.5;AN=8;AO=14;CIGAR=1X;DP=43;DPB=43;DPRA=0;EPP=33.4109;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=559;QR=1173;RO=29;RPL=0;RPP=33.4109;RPPR=65.983;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:10,1:10:403:1:37:-0.386499,0,-33.3176 0/1:16:7,9:7:287:9:360:-27.9433,0,-21.3887 0/1:6:3,3:3:123:3:121:-9.47381,0,-9.65861 0/1:10:9,1:9:360:1:41:-1.08427,0,-29.7531 dDocent_Contig_6916 1 . N G 510.079 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=17;CIGAR=1X;DP=17;DPB=17;DPRA=0;EPP=6.20364;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=43.4706;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=623;QR=0;RO=0;RPL=0;RPP=39.9253;RPPR=0;RPR=17;RUN=1;SAF=6;SAP=6.20364;SAR=11;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:7:0,7:0:0:7:245:-22.3343,-2.10721,0 1/1:1:0,1:0:0:1:35:-3.49863,-0.30103,0 1/1:3:0,3:0:0:3:110:-10.1237,-0.90309,0 1/1:6:0,6:0:0:6:233:-14.3517,-1.80618,0 dDocent_Contig_6917 67 . A G 204.245 . AB=0.27027;ABP=19.9713;AC=3;AF=0.375;AN=8;AO=10;CIGAR=1X;DP=49;DPB=49;DPRA=1.02778;EPP=24.725;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=392;QR=1512;RO=39;RPL=10;RPP=24.725;RPPR=87.6977;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:8:7,1:7:281:1:39:-1.48832,0,-23.2528 0/1:9:7,2:7:268:2:78:-4.69403,0,-21.7685 0/1:20:13,7:13:501:7:275:-19.096,0,-39.4114 0/0:12:12,0:12:462:0:0:0,-3.61236,-41.9257 dDocent_Contig_6918 8 . T C 89.3586 . AB=0.208333;ABP=20.744;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=74;DPB=74;DPRA=1.44;EPP=13.8677;EPPR=152.842;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.971014;PAO=0;PQA=0;PQR=0;PRO=0;QA=191;QR=2652;RO=69;RPL=0;RPP=13.8677;RPPR=152.842;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=69;SRP=152.842;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:19,5:19:734:5:191:-10.3338,0,-59.165 0/0:25:25,0:25:966:0:0:0,-7.52575,-87.2535 0/0:14:14,0:14:541:0:0:0,-4.21442,-49.0353 0/0:11:11,0:11:411:0:0:0,-3.31133,-37.3354 dDocent_Contig_6919 32 . T A 76.502 . AB=0.142857;ABP=65.0524;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1M7I2M1X2M7I1M4X;DP=84;DPB=94.1818;DPRA=1;EPP=20.3821;EPPR=168.042;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=303;QR=2978;RO=76;RPL=0;RPP=20.3821;RPPR=168.042;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=76;SRP=168.042;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:28:28,0:28:1093:0:0:0,-8.42884,-98.669 0|1:41:35,6:35:1371:6:223:-8.08476,0,-111.319 0|1:15:13,2:13:514:2:80:-3.07634,0,-42.0934 .:.:.:.:.:.:.:. dDocent_Contig_6920 7 . T C 1212.58 . AB=0.134253;ABP=929.057;AC=4;AF=0.5;AN=8;AO=107;CIGAR=1X;DP=797;DPB=797;DPRA=0;EPP=235.358;EPPR=1488.3;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=59.9883;NS=4;NUMALT=1;ODDS=0;PAIRED=0.981308;PAIREDR=0.975146;PAO=0;PQA=0;PQR=0;PRO=0;QA=4070;QR=26080;RO=684;RPL=0;RPP=235.358;RPPR=1488.3;RPR=107;RUN=1;SAF=107;SAP=235.358;SAR=0;SRF=684;SRP=1488.3;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:293:256,32:256:9778:32:1229:-23.837,0,-792.641 0/1:269:228,41:228:8697:41:1547:-58.5248,0,-701.505 0/1:168:141,26:141:5358:26:994:-39.1099,0,-431.558 0/1:67:59,8:59:2247:8:300:-7.18385,0,-182.284 dDocent_Contig_6921 7 . T G 162.093 . AB=0.230769;ABP=43.9342;AC=4;AF=0.5;AN=8;AO=15;CIGAR=1X;DP=65;DPB=65;DPRA=0;EPP=35.5824;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.933333;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=454;QR=1902;RO=50;RPL=0;RPP=35.5824;RPPR=111.584;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:18,3:18:693:3:90:-2.0743,0,-56.3815 0/1:15:9,6:9:328:6:202:-13.9898,0,-25.3493 0/1:21:16,5:16:617:5:128:-5.45145,0,-49.548 0/1:8:7,1:7:264:1:34:-0.990671,0,-21.7097 dDocent_Contig_6922 19 . G A 464.213 . AB=0.5;ABP=3.0103;AC=3;AF=0.375;AN=8;AO=17;CIGAR=1X;DP=41;DPB=41;DPRA=1.61905;EPP=39.9253;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.882353;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=677;QR=932;RO=24;RPL=0;RPP=39.9253;RPPR=55.1256;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:6,10:6:241:10:398:-31.3609,0,-17.2504 0/1:11:7,4:7:283:4:162:-11.6556,0,-22.5317 0/1:7:4,3:4:127:3:117:-8.8027,0,-9.62967 0/0:7:7,0:7:281:0:0:0,-2.10721,-25.6604 dDocent_Contig_6923 9 . T C 1070.96 . AB=0.385321;ABP=15.4614;AC=4;AF=0.5;AN=8;AO=42;CIGAR=1X;DP=109;DPB=109;DPRA=0;EPP=94.2121;EPPR=148.499;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.833333;PAIREDR=0.865672;PAO=0;PQA=0;PQR=0;PRO=0;QA=1621;QR=2571;RO=67;RPL=0;RPP=94.2121;RPPR=148.499;RPR=42;RUN=1;SAF=42;SAP=94.2121;SAR=0;SRF=67;SRP=148.499;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:6,8:6:233:8:296:-22.7782,0,-17.1257 0/1:56:45,11:45:1720:11:428:-22.0177,0,-138.2 0/1:25:10,15:10:389:15:585:-45.4675,0,-27.8426 0/1:14:6,8:6:229:8:312:-24.2305,0,-16.7609 dDocent_Contig_6924 107 . N T 242.566 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=14;CIGAR=1X;DP=14;DPB=14;DPRA=0;EPP=33.4109;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=31.5;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=400;QR=0;RO=0;RPL=0;RPP=33.4109;RPPR=0;RPR=14;RUN=1;SAF=0;SAP=33.4109;SAR=14;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:7:0,7:0:0:7:199:-17.071,-2.10721,0 ./.:.:.:.:.:.:.:. 1/1:7:0,7:0:0:7:201:-6.8846,-2.10721,0 dDocent_Contig_6926 29 . G C 154.209 . AB=0.4;ABP=4.31318;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=34;DPB=34;DPRA=2.36842;EPP=16.0391;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=233;QR=1107;RO=28;RPL=0;RPP=16.0391;RPPR=63.8115;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:9,6:9:354:6:233:-16.8187,0,-27.7037 0/0:6:6,0:6:238:0:0:0,-1.80618,-21.7933 0/0:10:10,0:10:393:0:0:0,-3.0103,-35.7213 0/0:3:3,0:3:122:0:0:0,-0.90309,-11.3725 dDocent_Contig_6927 98 . N G 67.567 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=3M2I9X6I1X;DP=2;DPB=3.23077;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=40;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=75;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. 1|1:2:0,2:0:0:2:75:-6.75562,-0.60206,0 .:.:.:.:.:.:.:. dDocent_Contig_6928 24 . C A 757.35 . AB=0.227273;ABP=102.503;AC=4;AF=0.5;AN=8;AO=35;CIGAR=1X;DP=154;DPB=154;DPRA=0;EPP=79.0118;EPPR=261.416;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1412;QR=4711;RO=119;RPL=0;RPP=79.0118;RPPR=261.416;RPR=35;RUN=1;SAF=35;SAP=79.0118;SAR=0;SRF=119;SRP=261.416;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:46:36,10:36:1422:10:404:-22.8727,0,-114.385 0/1:49:39,10:39:1528:10:405:-22.0597,0,-122.999 0/1:37:24,13:24:964:13:522:-36.1882,0,-75.9207 0/1:22:20,2:20:797:2:81:-1.06307,0,-65.425 dDocent_Contig_6929 148 . G A 195.004 . AB=0.161017;ABP=120.785;AC=3;AF=0.375;AN=8;AO=21;CIGAR=1X;DP=154;DPB=154;DPRA=0;EPP=48.6112;EPPR=291.816;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=731;QR=4530;RO=133;RPL=0;RPP=48.6112;RPPR=291.816;RPR=21;RUN=1;SAF=0;SAP=48.6112;SAR=21;SRF=0;SRP=291.816;SRR=133;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:56:46,10:46:1575:10:349:-14.8891,0,-125.182 0/0:36:34,2:34:1168:2:71:0,-4.09502,-98.6828 0/1:45:39,6:39:1301:6:206:-5.33033,0,-103.836 0/1:17:14,3:14:486:3:105:-4.67865,0,-38.9531 dDocent_Contig_6930 27 . A T 492.267 . AB=0.291667;ABP=30.1537;AC=4;AF=0.5;AN=8;AO=21;CIGAR=1X;DP=72;DPB=72;DPRA=0;EPP=48.6112;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=853;QR=2049;RO=51;RPL=0;RPP=48.6112;RPPR=113.755;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:10,7:10:402:7:283:-20.7259,0,-31.4229 0/1:21:18,3:18:728:3:122:-5.05086,0,-59.5235 0/1:23:17,6:17:678:6:244:-15.4151,0,-54.4255 0/1:11:6,5:6:241:5:204:-15.4327,0,-18.755 dDocent_Contig_6931 108 . C A 123.545 . AB=0.4;ABP=4.31318;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=32;DPB=32;DPRA=1.76471;EPP=16.0391;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=204;QR=816;RO=26;RPL=0;RPP=16.0391;RPPR=59.4686;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=59.4686;SRR=26;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5,0:5:162:0:0:0,-1.50515,-14.8993 0/1:15:9,6:9:283:6:204:-14.1784,0,-21.2611 0/0:12:12,0:12:371:0:0:0,-3.61236,-33.6889 ./.:.:.:.:.:.:.:. dDocent_Contig_6932 82 . T C 813.504 . AB=0.237179;ABP=96.6063;AC=3;AF=0.375;AN=8;AO=37;CIGAR=3M1X2M;DP=174;DPB=192.667;DPRA=0;EPP=83.3548;EPPR=239.701;GTI=0;LEN=1;MEANALT=2.66667;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=2.77556e-17;PAIRED=1;PAIREDR=0.990826;PAO=0;PQA=0;PQR=0;PRO=0;QA=1370;QR=4033;RO=109;RPL=37;RPP=83.3548;RPPR=239.701;RPR=0;RUN=1;SAF=37;SAP=83.3548;SAR=0;SRF=109;SRP=239.701;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:40:22,8,8:22:819:8,8:281,298:-17.7814,-1.54113,-66.175,0,-44.1878,-64.6455 0|1:59:34,7,18:34:1273:7,18:254,665:-44.1664,-33.6623,-135.819,0,-83.531,-98.8515 0|1:57:38,8,11:38:1395:8,11:290,407:-21.8619,-9.62612,-121.249,0,-90.3602,-110.726 0|0:18:15,3,0:15:546:3,0:111,0:-4.93538,0,-44.0554,-9.45083,-44.9585,-54.0405 dDocent_Contig_6933 117 . C A 232.941 . AB=0.588235;ABP=4.1599;AC=1;AF=0.125;AN=8;AO=16;CIGAR=1X;DP=122;DPB=122;DPRA=2.05882;EPP=37.7539;EPPR=233.186;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=536;QR=3621;RO=106;RPL=0;RPP=37.7539;RPPR=233.186;RPR=16;RUN=1;SAF=0;SAP=37.7539;SAR=16;SRF=0;SRP=233.186;SRR=106;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:46:43,3:43:1452:3:105:0,-4.05122,-121.175 0/1:17:7,10:7:244:10:331:-24.9931,0,-17.1825 0/0:42:39,3:39:1338:3:100:0,-3.31273,-111.388 0/0:17:17,0:17:587:0:0:0,-5.11751,-53.1556 dDocent_Contig_6934 29 . T A 909.817 . AB=0.414634;ABP=8.20065;AC=4;AF=0.5;AN=8;AO=34;CIGAR=1X;DP=82;DPB=82;DPRA=0;EPP=76.8404;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1351;QR=1897;RO=48;RPL=0;RPP=76.8404;RPPR=107.241;RPR=34;RUN=1;SAF=34;SAP=76.8404;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:34:19,15:19:756:15:601:-44.1914,0,-58.125 0/1:29:16,13:16:633:13:516:-38.0558,0,-48.5753 0/1:14:12,2:12:467:2:72:-2.6199,0,-38.1608 0/1:5:1,4:1:41:4:162:-13.4616,0,-2.58942 dDocent_Contig_6935 21 . C T 460.384 . AB=0.0408163;ABP=182.489;AC=0;AF=0;AN=8;AO=4;CIGAR=8M1X3M1X;DP=166;DPB=167.308;DPRA=0;EPP=11.6962;EPPR=270.101;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=151;QR=4819;RO=123;RPL=0;RPP=11.6962;RPPR=270.101;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=123;SRP=270.101;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:54:42,3,5,4:42:1650:3,5,4:111,188,161:-2.75235,-6.31979,-141.132,0,-126.636,-134.21,-2.11697,-128.766,-122.445,-136.64 0|0:40:32,0,2,6:32:1255:0,2,6:0,67,244:-10.5468,-20.1797,-123.389,-14.7715,-117.966,-117.364,0,-103.26,-97.8373,-101.454 0|0:44:30,1,3,10:30:1158:1,3,10:40,121,395:-23.4641,-29.1997,-123.986,-22.519,-114.312,-116.704,0,-91.7849,-85.1046,-92.0701 0|0:28:19,0,7,1:19:756:0,7,1:0,272,32:-16.6535,-22.3731,-84.6332,0,-62.2837,-60.1765,-19.8025,-82.0576,-59.7091,-81.7566 dDocent_Contig_6936 43 . G A 1521.84 . AB=0.263158;ABP=123.356;AC=4;AF=0.5;AN=8;AO=65;CIGAR=1X3M;DP=247;DPB=247;DPRA=0;EPP=144.156;EPPR=363.475;GTI=0;LEN=1;MEANALT=1.75;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2544;QR=6468;RO=166;RPL=0;RPP=144.156;RPPR=363.475;RPR=65;RUN=1;SAF=65;SAP=144.156;SAR=0;SRF=166;SRP=363.475;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:80:64,4,12:64:2487:4,12:160,458:-18.2869,-24.3682,-227.523,0,-191.161,-200.73 0|1:65:47,0,18:47:1830:0,18:0,712:-44.8374,-58.9858,-209.375,0,-150.783,-145.364 0|1:71:30,11,30:30:1166:11,30:434,1182:-88.2052,-61.5257,-154.02,0,-60.0917,-86.7726 0|1:31:25,1,5:25:985:1,5:36,192:-8.25219,-12.8445,-93.5861,0,-78.1307,-79.5616 dDocent_Contig_6937 8 . T C 81.5132 . AB=0.333333;ABP=5.9056;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=29;DPB=29;DPRA=1.41176;EPP=11.6962;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=147;QR=971;RO=25;RPL=0;RPP=11.6962;RPPR=57.2971;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:6:6,0:6:234:0:0:0,-1.80618,-21.4311 0/1:12:8,4:8:310:4:147:-9.97521,0,-24.6512 0/0:11:11,0:11:427:0:0:0,-3.31133,-38.7851 ./.:.:.:.:.:.:.:. dDocent_Contig_6938 8 . T C 463.015 . AB=0.242105;ABP=57.8914;AC=3;AF=0.375;AN=8;AO=23;CIGAR=1X;DP=100;DPB=100;DPRA=6.33333;EPP=52.9542;EPPR=170.214;GTI=0;LEN=1;MEANALT=1;MQM=58.5652;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=892;QR=2966;RO=77;RPL=0;RPP=52.9542;RPPR=170.214;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=77;SRP=170.214;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:56:39,17:39:1498:17:658:-41.5916,0,-118.236 0/1:23:19,4:19:731:4:156:-7.4936,0,-59.1974 0/1:16:14,2:14:543:2:78:-2.58699,0,-44.3995 0/0:5:5,0:5:194:0:0:0,-1.50515,-17.8328 dDocent_Contig_6939 10 . G T 1900.74 . AB=0.0366972;ABP=206.232;AC=0;AF=0;AN=8;AO=4;CIGAR=1X2M1X2M3D2M1X2M2I3M1X1M1X;DP=294;DPB=287.05;DPRA=0;EPP=11.6962;EPPR=304.845;GTI=0;LEN=1;MEANALT=6;MQM=60;MQMR=60;NS=4;NUMALT=5;ODDS=5.55112e-17;PAIRED=1;PAIREDR=0.964029;PAO=0;PQA=0;PQR=0;PRO=0;QA=159;QR=5405;RO=139;RPL=0;RPP=11.6962;RPPR=304.845;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=139;SRP=304.845;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:90:31,0,5,11,4,30:31:1218:0,5,11,4,30:0,197,431,156,1143:-84.3997,-93.7316,-193.917,-77.5233,-177.709,-176.204,-58.2877,-158.474,-142.266,-155.163,-80.9782,-181.164,-164.956,-145.721,-179.96,0,-100.184,-83.976,-64.7412,-87.4308,-91.1529 0|0:95:52,0,0,8,10,22:52:1998:0,0,8,10,22:0,0,318,393,773:-46.1436,-61.7972,-225.808,-61.7972,-225.808,-225.808,-35.6085,-199.624,-199.624,-197.216,-29.8348,-193.85,-193.85,-167.666,-190.84,0,-163.996,-163.996,-137.812,-132.039,-157.373 0|0:58:33,3,0,0,5,14:33:1303:3,0,0,5,14:120,0,0,196,534:-33.7988,-33.8457,-140.165,-43.7328,-141.068,-150.954,-43.7328,-141.068,-150.954,-150.954,-27.613,-124.95,-134.836,-134.836,-133.33,0,-97.332,-107.218,-107.218,-91.0995,-103.003 0|0:51:23,1,0,6,3,13:23:886:1,0,6,3,13:39,0,237,119,489:-33.1294,-36.847,-109.29,-40.0531,-109.591,-112.797,-20.5681,-90.1073,-93.3134,-91.5072,-30.3753,-99.9136,-103.12,-83.6358,-102.217,0,-69.5333,-72.7392,-53.2556,-63.0619,-68.8258 dDocent_Contig_6940 9 . T C 94.2004 . AB=0.0481283;ABP=334.665;AC=2;AF=0.25;AN=8;AO=11;CIGAR=3M3X1M;DP=314;DPB=306.857;DPRA=1.89362;EPP=26.8965;EPPR=537.723;GTI=0;LEN=1;MEANALT=4.33333;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=0.969466;PAO=0;PQA=0;PQR=0;PRO=0;QA=433;QR=9950;RO=262;RPL=0;RPP=26.8965;RPPR=571.936;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=258;SRP=537.723;SRR=4;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:79:58,6,4,6:58:2171:6,4,6:238,148,233:-1.68885,-0.252409,-176.234,-7.11194,-166.001,-183.692,0,-158.894,-165.75,-175.983 0|0:80:75,0,3,2:75:2860:0,3,2:0,110,80:0,-22.5772,-257.205,-13.6547,-248.262,-247.359,-15.9731,-250.614,-241.671,-250.012 0|1:108:83,12,3,3:83:3155:12,3,3:473,107,120:-11.0433,0,-255.128,-27.3483,-250.058,-285.191,-26.1404,-248.855,-276.208,-283.988 0|0:47:46,0,0,0:46:1764:0,0,0:0,0,0:0,-13.8474,-158.638,-13.8474,-158.638,-158.638,-13.8474,-158.638,-158.638,-158.638 dDocent_Contig_6941 37 . G C 633.313 . AB=0.27;ABP=48.9587;AC=3;AF=0.375;AN=8;AO=27;CIGAR=1X;DP=112;DPB=112;DPRA=2.77778;EPP=61.6401;EPPR=187.585;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=0.988235;PAO=0;PQA=0;PQR=0;PRO=0;QA=1086;QR=3417;RO=85;RPL=0;RPP=61.6401;RPPR=187.585;RPR=27;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=85;SRP=187.585;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:12:12,0:12:473:0:0:0,-3.61236,-42.9202 0/1:51:40,11:40:1619:11:438:-24.4211,0,-130.584 0/1:34:26,8:26:1039:8:323:-19.2039,0,-83.5641 0/1:15:7,8:7:286:8:325:-25.1042,0,-21.5994 dDocent_Contig_6942 16 . G T 36.119 . AB=0.133333;ABP=38.0434;AC=1;AF=0.125;AN=8;AO=13;CIGAR=2X3M;DP=89;DPB=87.4;DPRA=0;EPP=31.2394;EPPR=139.813;GTI=0;LEN=1;MEANALT=2.25;MQM=17;MQMR=60;NS=4;NUMALT=4;ODDS=0;PAIRED=0;PAIREDR=0.507937;PAO=0;PQA=0;PQR=0;PRO=0;QA=221;QR=2427;RO=63;RPL=0;RPP=31.2394;RPPR=139.813;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=63;SRP=139.813;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:21:16,0,2,0,3:16:616:0,2,0,3:0,34,0,118:-5.0015,-9.81798,-60.4636,-7.99452,-58.5631,-57.961,-9.81798,-60.4636,-58.5631,-60.4636,0,-50.7915,-48.8947,-50.7915,-49.8884 0|0:37:26,3,6,2,0:26:1002:3,6,2,0:118,102,80,0:0,-6.33225,-87.8393,-2.09508,-83.014,-82.7051,-1.18664,-82.1489,-77.9184,-83.0514,-7.82678,-88.7424,-84.5113,-83.6535,-90.2478 0|0:22:17,2,3,0,0:17:653:2,3,0,0:81,51,0,0:0,-4.1202,-57.3259,-2.20141,-55.0786,-55.162,-5.11751,-57.928,-56.0651,-58.922,-5.11751,-57.928,-56.0651,-58.922,-58.922 0|1:9:4,3,2,0,0:4:156:3,2,0,0:115,34,0,0:-0.739963,-0.449201,-12.5355,0,-11.5978,-12.3924,-1.94408,-13.4386,-12.9945,-14.8915,-1.94408,-13.4386,-12.9945,-14.8915,-14.8915 dDocent_Contig_6944 16 . G A 2240.16 . AB=0.328413;ABP=72.3131;AC=3;AF=0.375;AN=8;AO=93;CIGAR=1X;DP=336;DPB=336;DPRA=0;EPP=204.957;EPPR=528.507;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=59.8306;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.909091;PAO=0;PQA=0;PQR=0;PRO=0;QA=3590;QR=9542;RO=242;RPL=0;RPP=204.957;RPPR=528.507;RPR=93;RUN=1;SAF=93;SAP=204.957;SAR=0;SRF=242;SRP=528.507;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:114:77,36:77:3013:36:1383:-90.3225,0,-236.84 0/1:124:81,43:81:3225:43:1679:-114.023,0,-252.858 0/0:65:61,4:61:2399:4:143:0,-6.35031,-202.836 0/1:33:23,10:23:905:10:385:-25.0689,0,-71.8227 dDocent_Contig_6946 46 . T A 485.319 . AB=0.404255;ABP=6.75262;AC=3;AF=0.375;AN=8;AO=19;CIGAR=1X;DP=59;DPB=59;DPRA=1.30556;EPP=44.2683;EPPR=29.2851;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=53.65;NS=4;NUMALT=1;ODDS=0;PAIRED=0.947368;PAIREDR=0.675;PAO=0;PQA=0;PQR=0;PRO=0;QA=744;QR=1534;RO=40;RPL=0;RPP=44.2683;RPPR=89.8692;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=31;SRP=29.2851;SRR=9;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:12,7:12:452:7:270:-18.9437,0,-34.5553 0/0:12:12,0:12:473:0:0:0,-3.61236,-42.0497 0/1:16:6,10:6:222:10:392:-30.8181,0,-13.7909 0/1:12:10,2:10:387:2:82:-4.16732,0,-31.0081 dDocent_Contig_6947 53 . T A 1469.07 . AB=0.389706;ABP=17.3803;AC=4;AF=0.5;AN=8;AO=53;CIGAR=3M1X8M;DP=136;DPB=136.583;DPRA=0;EPP=118.098;EPPR=165.871;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2134;QR=2888;RO=75;RPL=53;RPP=118.098;RPPR=165.871;RPR=0;RUN=1;SAF=53;SAP=118.098;SAR=0;SRF=75;SRP=165.871;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:53:32,4,15:32:1233:4,15:156,598:-39.7789,-44.184,-144.23,0,-96.1838,-96.9115 0|1:38:15,0,23:15:571:0,23:0,929:-72.4741,-76.9896,-123.809,0,-47.2093,-40.2857 0|1:30:18,0,12:18:695:0,12:0,487:-35.1502,-40.5687,-97.6269,0,-57.4557,-53.8433 0|1:15:10,1,3:10:389:1,3:39,120:-6.90128,-6.70554,-38.3779,0,-28.7906,-31.0921 dDocent_Contig_6948 30 . T C 1817.05 . AB=0.477273;ABP=3.60252;AC=4;AF=0.5;AN=8;AO=63;CIGAR=1X;DP=132;DPB=132;DPRA=0;EPP=139.813;EPPR=152.842;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.952381;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2528;QR=2755;RO=69;RPL=0;RPP=139.813;RPPR=152.842;RPR=63;RUN=1;SAF=63;SAP=139.813;SAR=0;SRF=69;SRP=152.842;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:35:29,6:29:1158:6:230:-10.5265,0,-93.9659 0/1:40:12,28:12:468:28:1135:-90.3879,0,-30.4248 0/1:34:13,21:13:527:21:846:-66.2179,0,-37.5423 0/1:23:15,8:15:602:8:317:-21.9707,0,-47.5932 dDocent_Contig_6949 196 . A G 69.2389 . AB=0.2;ABP=22.5536;AC=2;AF=0.25;AN=8;AO=5;CIGAR=1X;DP=48;DPB=48;DPRA=1.08696;EPP=13.8677;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=190;QR=1656;RO=43;RPL=5;RPP=13.8677;RPPR=96.3836;RPR=0;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=96.3836;SRR=43;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:8,2:8:312:2:76:-4.20437,0,-25.4346 0/0:9:9,0:9:349:0:0:0,-2.70927,-31.7709 0/1:15:12,3:12:454:3:114:-6.11677,0,-36.6916 0/0:14:14,0:14:541:0:0:0,-4.21442,-49.0353 dDocent_Contig_6950 11 . G A 252.753 . AB=0.180723;ABP=76.5003;AC=2;AF=0.25;AN=8;AO=22;CIGAR=1X;DP=177;DPB=177;DPRA=0;EPP=50.7827;EPPR=322.441;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=0.909091;PAIREDR=0.870968;PAO=0;PQA=0;PQR=0;PRO=0;QA=870;QR=6108;RO=155;RPL=0;RPP=50.7827;RPPR=339.589;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=153;SRP=322.441;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:63:58,5:58:2275:5:201:0,-0.494372,-186.455 0/1:58:46,12:46:1805:12:466:-24.8246,0,-145.205 0/1:25:22,3:22:868:3:122:-3.84674,0,-70.9055 0/0:31:29,2:29:1160:2:81:0,-1.6462,-96.9973 dDocent_Contig_6951 40 . C A 906.626 . AB=0.254777;ABP=85.0145;AC=3;AF=0.375;AN=8;AO=40;CIGAR=1X;DP=172;DPB=172;DPRA=3.48889;EPP=89.8692;EPPR=289.645;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1581;QR=5290;RO=132;RPL=0;RPP=89.8692;RPPR=289.645;RPR=40;RUN=1;SAF=40;SAP=89.8692;SAR=0;SRF=132;SRP=289.645;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:15:15,0:15:608:0:0:0,-4.51545,-55.0583 0/1:55:43,12:43:1714:12:479:-26.9042,0,-137.927 0/1:54:34,20:34:1362:20:786:-54.8014,0,-106.58 0/1:48:40,8:40:1606:8:316:-14.3549,0,-130.32 dDocent_Contig_6952 9 . T A 797.411 . AB=0.461538;ABP=3.84548;AC=4;AF=0.5;AN=8;AO=30;CIGAR=1X;DP=65;DPB=65;DPRA=0;EPP=68.1545;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=59;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.8;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1154;QR=1350;RO=35;RPL=0;RPP=68.1545;RPPR=79.0118;RPR=30;RUN=1;SAF=30;SAP=68.1545;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:12,5:12:459:5:191:-12.43,0,-36.5413 0/1:11:10,1:10:390:1:39:-0.585235,0,-32.1474 0/1:30:10,20:10:389:20:768:-60.3948,0,-26.3375 0/1:7:3,4:3:112:4:156:-12.3101,0,-8.33869 dDocent_Contig_6954 37 . G A 3362.24 . AB=0.641176;ABP=32.4401;AC=4;AF=0.5;AN=8;AO=109;CIGAR=1X;DP=170;DPB=170;DPRA=0;EPP=239.701;EPPR=135.47;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.981651;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4374;QR=2417;RO=61;RPL=0;RPP=239.701;RPPR=135.47;RPR=109;RUN=1;SAF=109;SAP=239.701;SAR=0;SRF=61;SRP=135.47;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:77:9,68:9:362:68:2735:-223.077,0,-9.76488 0/1:64:38,26:38:1489:26:1039:-74.5333,0,-114.989 0/1:22:11,11:11:444:11:438:-33.1515,0,-33.6929 0/1:7:3,4:3:122:4:162:-12.8597,0,-9.26528 dDocent_Contig_6955 73 . T C 1095.82 . AB=0.432692;ABP=7.10269;AC=2;AF=0.25;AN=8;AO=45;CIGAR=1X;DP=212;DPB=212;DPRA=0.962963;EPP=100.727;EPPR=365.646;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1596;QR=5426;RO=167;RPL=45;RPP=100.727;RPPR=365.646;RPR=0;RUN=1;SAF=45;SAP=100.727;SAR=0;SRF=167;SRP=365.646;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:66:66,0:66:2219:0:0:0,-19.868,-199.974 0/1:80:42,38:42:1280:38:1344:-97.1762,0,-91.388 0/0:42:42,0:42:1394:0:0:0,-12.6433,-125.751 0/1:24:17,7:17:533:7:252:-15.8039,0,-41.0442 dDocent_Contig_6956 7 . T C 3823.81 . AB=0.0533333;ABP=392.92;AC=0;AF=0;AN=8;AO=12;CIGAR=1X3M1X;DP=245;DPB=245;DPRA=0;EPP=29.068;EPPR=213.643;GTI=0;LEN=1;MEANALT=3.33333;MQM=58;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=0.0833333;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=453;QR=3654;RO=97;RPL=0;RPP=29.068;RPPR=213.643;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=97;SRP=213.643;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:94:46,5,8,35:46:1725:5,8,35:192,297,1363:-98.162,-96.4047,-236.176,-87.7505,-213.421,-226.618,0,-125.677,-117.022,-130.747 0|0:86:37,1,2,45:37:1406:1,2,45:39,78,1823:-139.202,-147.291,-262.279,-143.929,-256.168,-258.616,0,-112.244,-108.882,-101.748 0|0:45:9,2,2,32:9:337:2,2,32:77,78,1296:-104.187,-101.221,-128.21,-100.492,-122.409,-127.482,0,-21.9275,-21.194,-17.9684 0|0:20:5,0,0,15:5:186:0,0,15:0,0,599:-48.2285,-49.7336,-64.9505,-49.7336,-64.9505,-64.9505,0,-15.5954,-15.5954,-11.08 dDocent_Contig_6957 72 . G T 290.461 . AB=0.181818;ABP=109.412;AC=3;AF=0.375;AN=8;AO=22;CIGAR=1X;DP=171;DPB=171;DPRA=0.806667;EPP=50.7827;EPPR=326.56;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.4564;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.979866;PAO=0;PQA=0;PQR=0;PRO=0;QA=776;QR=4953;RO=149;RPL=22;RPP=50.7827;RPPR=326.56;RPR=0;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=149;SRP=326.56;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:50:50,0:50:1696:0:0:0,-15.0515,-152.916 0/1:60:53,7:53:1720:7:254:-5.14904,0,-135.726 0/1:44:38,6:38:1273:6:221:-7.00148,0,-101.612 0/1:17:8,9:8:264:9:301:-22.2935,0,-18.9657 dDocent_Contig_6959 107 . N G 195.201 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=6;CIGAR=1X;DP=6;DPB=6;DPRA=0;EPP=16.0391;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=206;QR=0;RO=0;RPL=0;RPP=16.0391;RPPR=0;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:68:-6.45793,-0.60206,0 1/1:4:0,4:0:0:4:138:-12.7604,-1.20412,0 dDocent_Contig_6961 2 . A G 1349.67 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=45;CIGAR=1I2X;DP=45;DPB=67.5;DPRA=0;EPP=100.727;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=58.4889;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=0.933333;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1480;QR=0;RO=0;RPL=0;RPP=100.727;RPPR=0;RPR=45;RUN=1;SAF=45;SAP=100.727;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:11:0,11:0:0:11:357:-32.3386,-3.31133,0 1|1:10:0,10:0:0:10:327:-29.7493,-3.0103,0 1|1:17:0,17:0:0:17:567:-51.3476,-5.11751,0 1|1:7:0,7:0:0:7:229:-20.9292,-2.10721,0 dDocent_Contig_6963 22 . A G 26325.7 . AB=0.852018;ABP=723.072;AC=5;AF=0.625;AN=8;AO=844;CIGAR=1X;DP=962;DPB=962;DPRA=0;EPP=1835.73;EPPR=259.244;GTI=0;LEN=1;MEANALT=1;MQM=59.9147;MQMR=60;NS=4;NUMALT=1;ODDS=5.55112e-17;PAIRED=0.9609;PAIREDR=0.90678;PAO=0;PQA=0;PQR=0;PRO=0;QA=32308;QR=4599;RO=118;RPL=0;RPP=1835.73;RPPR=259.244;RPR=844;RUN=1;SAF=844;SAP=1835.73;SAR=0;SRF=118;SRP=259.244;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:293:19,274:19:742:274:10404:-868.82,-21.0977,0 0/1:288:45,243:45:1746:243:9295:-749.507,0,-70.6733 0/1:291:43,248:43:1694:248:9562:-772.365,0,-65.1018 0/1:90:11,79:11:417:79:3047:-247.28,0,-10.7854 dDocent_Contig_6964 63 . C T 322.044 . AB=0.253333;ABP=42.6469;AC=2;AF=0.25;AN=8;AO=20;CIGAR=1X;DP=132;DPB=132;DPRA=5.16667;EPP=46.4397;EPPR=246.215;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=676;QR=4035;RO=112;RPL=20;RPP=46.4397;RPPR=246.215;RPR=0;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=112;SRP=246.215;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:70:53,17:53:1913:17:566:-30.1762,0,-151.363 0/0:49:48,1:48:1721:1:37:0,-11.0526,-151.467 0/0:8:8,0:8:290:0:0:0,-2.40824,-26.4489 0/1:5:3,2:3:111:2:73:-5.42615,0,-8.84877 dDocent_Contig_6965 70 . A G 293.002 . AB=0.342857;ABP=10.5174;AC=2;AF=0.25;AN=8;AO=12;CIGAR=1X;DP=81;DPB=81;DPRA=0.76087;EPP=29.068;EPPR=152.842;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=474;QR=2668;RO=69;RPL=12;RPP=29.068;RPPR=152.842;RPR=0;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=69;SRP=152.842;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:10:10,0:10:400:0:0:0,-3.0103,-36.3595 0/0:36:36,0:36:1385:0:0:0,-10.8371,-124.915 0/1:16:6,10:6:210:10:393:-30.9088,0,-14.4117 0/1:19:17,2:17:673:2:81:-1.96616,0,-55.1798 dDocent_Contig_6967 21 . T A 1634.55 . AB=0.323383;ABP=57.47;AC=4;AF=0.5;AN=8;AO=65;CIGAR=1X;DP=201;DPB=201;DPRA=0;EPP=144.156;EPPR=298.331;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.992647;PAO=0;PQA=0;PQR=0;PRO=0;QA=2556;QR=5457;RO=136;RPL=0;RPP=144.156;RPPR=298.331;RPR=65;RUN=1;SAF=65;SAP=144.156;SAR=0;SRF=136;SRP=298.331;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:72:59,13:59:2365:13:516:-25.1101,0,-191.328 0/1:76:34,42:34:1356:42:1650:-125.854,0,-99.4221 0/1:43:35,8:35:1411:8:313:-15.5902,0,-114.298 0/1:10:8,2:8:325:2:77:-4.2979,0,-26.6091 dDocent_Contig_6968 22 . C T 239.19 . AB=0.25;ABP=26.8965;AC=5;AF=0.625;AN=8;AO=13;CIGAR=1X;DP=46;DPB=46;DPRA=0;EPP=31.2394;EPPR=50.9801;GTI=0;LEN=1;MEANALT=1;MQM=45.3846;MQMR=59.0909;NS=4;NUMALT=1;ODDS=0;PAIRED=0.230769;PAIREDR=0.69697;PAO=0;PQA=0;PQR=0;PRO=0;QA=499;QR=1264;RO=33;RPL=0;RPP=31.2394;RPPR=74.6689;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=30;SRP=50.9801;SRR=3;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:7,4:7:275:4:152:-8.34295,0,-21.7969 0/1:15:11,4:11:429:4:144:-8.70255,0,-34.4395 0/1:18:15,3:15:560:3:122:-4.58521,0,-45.311 1/1:2:0,2:0:0:2:81:-7.68573,-0.60206,0 dDocent_Contig_6969 19 . A G 891.319 . AB=0.507937;ABP=3.04477;AC=4;AF=0.5;AN=8;AO=32;CIGAR=1X;DP=63;DPB=63;DPRA=0;EPP=72.4974;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1267;QR=1252;RO=31;RPL=0;RPP=72.4974;RPPR=70.3259;RPR=32;RUN=1;SAF=32;SAP=72.4974;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:10,9:10:406:9:354:-26.4999,0,-31.1805 0/1:22:10,12:10:407:12:469:-35.9351,0,-30.3679 0/1:14:6,8:6:236:8:323:-25.2231,0,-17.3963 0/1:8:5,3:5:203:3:121:-8.87175,0,-16.2448 dDocent_Contig_6971 16 . C T 77.7554 . AB=0.25;ABP=11.6962;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=45;DPB=45;DPRA=1.10345;EPP=3.0103;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.97561;PAO=0;PQA=0;PQR=0;PRO=0;QA=156;QR=1632;RO=41;RPL=0;RPP=11.6962;RPPR=92.0407;RPR=4;RUN=1;SAF=2;SAP=3.0103;SAR=2;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:16:16,0:16:641:0:0:0,-4.81648,-58.0254 ./.:.:.:.:.:.:.:. 0/1:16:12,4:12:471:4:156:-9.59945,0,-37.9184 0/0:13:13,0:13:520:0:0:0,-3.91339,-47.1449 dDocent_Contig_6973 23 . A G 2558.52 . AB=0.650794;ABP=27.8961;AC=2;AF=0.25;AN=8;AO=87;CIGAR=1X;DP=245;DPB=245;DPRA=0;EPP=191.928;EPPR=346.103;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3500;QR=6313;RO=158;RPL=0;RPP=191.928;RPPR=346.103;RPR=87;RUN=1;SAF=87;SAP=191.928;SAR=0;SRF=158;SRP=346.103;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:75:20,55:20:798:55:2209:-176.399,0,-49.5589 0/1:51:24,27:24:966:27:1088:-82.8514,0,-71.8863 0/0:59:57,2:57:2273:2:81:0,-10.075,-197.046 0/0:60:57,3:57:2276:3:122:0,-6.68931,-193.63 dDocent_Contig_6974 14 . G A 244.305 . AB=0.107266;ABP=390.186;AC=1;AF=0.125;AN=8;AO=73;CIGAR=1X;DP=1098;DPB=1098;DPRA=0;EPP=161.528;EPPR=2209.23;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=59.9873;NS=4;NUMALT=1;ODDS=0;PAIRED=0.616438;PAIREDR=0.398039;PAO=0;PQA=0;PQR=0;PRO=0;QA=2928;QR=40737;RO=1020;RPL=0;RPP=161.528;RPPR=2217.91;RPR=73;RUN=1;SAF=73;SAP=161.528;SAR=0;SRF=1019;SRP=2209.23;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:392:371,20:371:14785:20:804:0,-45.4336,-1256.82 0/1:289:254,31:254:10166:31:1245:-26.129,0,-828.003 0/0:282:271,11:271:10827:11:435:0,-45.3853,-934.185 0/0:135:124,11:124:4959:11:444:0,-0.323447,-405.877 dDocent_Contig_6975 41 . C A 395.389 . AB=0.369565;ABP=9.80795;AC=3;AF=0.375;AN=8;AO=17;CIGAR=1X;DP=56;DPB=56;DPRA=1.53333;EPP=39.9253;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=0.294118;PAIREDR=0.769231;PAO=0;PQA=0;PQR=0;PRO=0;QA=640;QR=1549;RO=39;RPL=0;RPP=39.9253;RPPR=87.6977;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:6:5,1:5:200:1:38:-1.99109,0,-16.5732 0/1:28:15,13:15:580:13:486:-35.637,0,-44.0974 0/0:10:10,0:10:406:0:0:0,-3.0103,-36.8995 0/1:12:9,3:9:363:3:116:-7.20466,0,-29.4219 dDocent_Contig_6976 54 . G A 58.8222 . AB=0.137931;ABP=69.053;AC=3;AF=0.375;AN=8;AO=8;CIGAR=1X;DP=83;DPB=83;DPRA=0.773333;EPP=20.3821;EPPR=165.871;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.906667;PAO=0;PQA=0;PQR=0;PRO=0;QA=293;QR=2940;RO=75;RPL=8;RPP=20.3821;RPPR=165.871;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=75;SRP=165.871;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:19,3:19:756:3:95:-2.23386,0,-61.7373 0/1:25:21,4:21:809:4:157:-6.98143,0,-65.5915 0/0:25:25,0:25:990:0:0:0,-7.52575,-89.3935 0/1:11:10,1:10:385:1:41:-0.783237,0,-31.6927 dDocent_Contig_6977 1 . N G 211.563 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=6;CIGAR=1X;DP=6;DPB=6;DPRA=0;EPP=16.0391;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=8.76405;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=231;QR=0;RO=0;RPL=0;RPP=16.0391;RPPR=0;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:6:0,6:0:0:6:231:-21.1563,-1.80618,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_6978 209 . N G 110.95 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=119;QR=0;RO=0;RPL=3;RPP=9.52472;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:119:-11.0945,-0.90309,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_6979 36 . A T 155.903 . AB=0.170732;ABP=80.23;AC=2;AF=0.25;AN=8;AO=14;CIGAR=1X;DP=120;DPB=120;DPRA=2.15789;EPP=33.4109;EPPR=231.015;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=0.847619;PAO=0;PQA=0;PQR=0;PRO=0;QA=478;QR=4091;RO=105;RPL=0;RPP=33.4109;RPPR=231.015;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=105;SRP=231.015;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:27:26,0:26:1033:0:0:0,-7.82678,-93.0188 0/1:54:46,8:46:1757:8:291:-10.282,0,-142.088 0/1:28:22,6:22:867:6:187:-8.70627,0,-69.9074 0/0:11:11,0:11:434:0:0:0,-3.31133,-39.4115 dDocent_Contig_6980 13 . A G 595.982 . AB=0.44898;ABP=4.11819;AC=2;AF=0.25;AN=8;AO=22;CIGAR=1X1M1X;DP=101;DPB=101;DPRA=0.942308;EPP=50.7827;EPPR=174.557;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=856;QR=3117;RO=79;RPL=0;RPP=50.7827;RPPR=174.557;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=79;SRP=174.557;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:32:32,0:32:1249:0:0:0,-9.63296,-112.68 0|0:20:20,0:20:808:0:0:0,-6.0206,-73.0375 0|1:31:17,14:17:661:14:547:-40.2424,0,-50.4832 0|1:18:10,8:10:399:8:309:-22.7537,0,-30.8496 dDocent_Contig_6981 35 . A T 568.175 . AB=0.14;ABP=340.718;AC=3;AF=0.375;AN=8;AO=44;CIGAR=1X;DP=355;DPB=355;DPRA=0;EPP=98.5551;EPPR=669.68;GTI=0;LEN=1;MEANALT=1;MQM=56.0682;MQMR=57.3505;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=0.0681818;PAIREDR=0.726688;PAO=0;PQA=0;PQR=0;PRO=0;QA=1778;QR=12376;RO=311;RPL=0;RPP=98.5551;RPPR=678.338;RPR=44;RUN=1;SAF=44;SAP=98.5551;SAR=0;SRF=310;SRP=669.68;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:102:84,18:84:3324:18:724:-33.8102,0,-268.018 0/1:102:89,13:89:3550:13:521:-16.4353,0,-280.87 0/1:96:85,11:85:3380:11:451:-11.9699,0,-272.463 0/0:55:53,2:53:2122:2:82:0,-8.82073,-182.535 dDocent_Contig_6982 8 . T A 360.212 . AB=0.216867;ABP=60.8029;AC=1;AF=0.125;AN=8;AO=28;CIGAR=1X;DP=250;DPB=250;DPRA=0;EPP=63.8115;EPPR=485.077;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1080;QR=8549;RO=222;RPL=0;RPP=63.8115;RPPR=485.077;RPR=28;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=222;SRP=485.077;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:129:122,7:122:4685:7:271:0,-14.0766,-396.932 0/1:83:65,18:65:2518:18:693:-37.7184,0,-201.83 0/0:25:23,2:23:890:2:77:0,-0.216608,-73.1101 0/0:13:12,1:12:456:1:39:0,-0.0168255,-37.4913 dDocent_Contig_6983 14 . G A 1199.24 . AB=0.409091;ABP=10.9066;AC=4;AF=0.5;AN=8;AO=45;CIGAR=1X;DP=110;DPB=110;DPRA=0;EPP=100.727;EPPR=144.156;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.933333;PAIREDR=0.753846;PAO=0;PQA=0;PQR=0;PRO=0;QA=1762;QR=2602;RO=65;RPL=0;RPP=100.727;RPPR=144.156;RPR=45;RUN=1;SAF=45;SAP=100.727;SAR=0;SRF=65;SRP=144.156;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:38:28,10:28:1136:10:387:-23.7438,0,-91.0795 0/1:43:19,24:19:755:24:941:-72.0445,0,-55.3257 0/1:21:11,10:11:436:10:394:-29.4933,0,-33.2711 0/1:8:7,1:7:275:1:40:-1.58744,0,-22.7045 dDocent_Contig_6984 9 . T C 846.654 . AB=0.223404;ABP=127.939;AC=4;AF=0.5;AN=8;AO=42;CIGAR=2X;DP=188;DPB=188;DPRA=0;EPP=94.2121;EPPR=320.045;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=58.9315;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.945205;PAO=0;PQA=0;PQR=0;PRO=0;QA=1636;QR=5742;RO=146;RPL=0;RPP=94.2121;RPPR=320.045;RPR=42;RUN=1;SAF=42;SAP=94.2121;SAR=0;SRF=146;SRP=320.045;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:26:21,5:21:835:5:197:-10.2793,0,-66.1736 0|1:81:69,12:69:2716:12:470:-18.2671,0,-218.762 0|1:41:24,17:24:938:17:666:-47.9329,0,-71.9589 0|1:40:32,8:32:1253:8:303:-15.584,0,-100.785 dDocent_Contig_6985 107 . N T 182.544 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=6;CIGAR=1X3M1X;DP=6;DPB=6.2;DPRA=0;EPP=16.0391;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=8.76405;PAIRED=1;PAIREDR=0;PAO=1;PQA=35;PQR=0;PRO=0;QA=203;QR=0;RO=0;RPL=0;RPP=16.0391;RPPR=0;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:6:0,6:0:0:6:203:-18.2543,-1.80618,0 .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. dDocent_Contig_6986 25 . A G 757.891 . AB=0.303922;ABP=37.0726;AC=4;AF=0.5;AN=8;AO=31;CIGAR=1X;DP=102;DPB=102;DPRA=0;EPP=70.3259;EPPR=157.185;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.903226;PAIREDR=0.830986;PAO=0;PQA=0;PQR=0;PRO=0;QA=1249;QR=2778;RO=71;RPL=0;RPP=70.3259;RPPR=157.185;RPR=31;RUN=1;SAF=31;SAP=70.3259;SAR=0;SRF=71;SRP=157.185;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:9,14:9:361:14:556:-43.4565,0,-25.9293 0/1:24:18,6:18:719:6:245:-15.2048,0,-57.81 0/1:35:27,8:27:1033:8:326:-19.1738,0,-82.7144 0/1:20:17,3:17:665:3:122:-5.35189,0,-54.1619 dDocent_Contig_6987 24 . A C 75.7432 . AB=0.153846;ABP=43.6001;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1M1I1M2X;DP=54;DPB=55.5;DPRA=1.3;EPP=16.0391;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.979167;PAO=0;PQA=0;PQR=0;PRO=0;QA=245;QR=1853;RO=48;RPL=0;RPP=16.0391;RPPR=107.241;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:20:17,3:17:658:3:122:-5.35189,0,-53.5232 0|1:19:16,3:16:629:3:123:-5.74522,0,-51.2244 0|0:15:15,0:15:566:0:0:0,-4.51545,-51.2728 .:.:.:.:.:.:.:. dDocent_Contig_6989 7 . T C 55.0651 . AB=0.25;ABP=9.52472;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=37;DPB=37;DPRA=1.44;EPP=9.52472;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=116;QR=1286;RO=34;RPL=0;RPP=9.52472;RPPR=76.8404;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:12:12,0:12:455:0:0:0,-3.61236,-41.2953 0/0:10:10,0:10:374:0:0:0,-3.0103,-34.0079 0/1:12:9,3:9:343:3:116:-7.20534,0,-27.6141 0/0:3:3,0:3:114:0:0:0,-0.90309,-10.6322 dDocent_Contig_6991 50 . T A 228.592 . AB=0.470588;ABP=3.13803;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X;DP=60;DPB=60;DPRA=1.375;EPP=24.725;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=408;QR=1961;RO=50;RPL=10;RPP=24.725;RPPR=111.584;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:16:16,0:16:612:0:0:0,-4.81648,-55.398 0/1:17:9,8:9:363:8:327:-24.6826,0,-27.9157 ./.:.:.:.:.:.:.:. 0/0:27:25,2:25:986:2:81:0,-0.442076,-81.3505 dDocent_Contig_6992 31 . T C 1944.28 . AB=0.412121;ABP=14.0782;AC=3;AF=0.375;AN=8;AO=68;CIGAR=1X3M1X;DP=165;DPB=165;DPRA=0;EPP=150.67;EPPR=155.013;GTI=0;LEN=1;MEANALT=2.25;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.985294;PAIREDR=0.928571;PAO=0;PQA=0;PQR=0;PRO=0;QA=2624;QR=2758;RO=70;RPL=0;RPP=150.67;RPPR=155.013;RPR=68;RUN=1;SAF=68;SAP=150.67;SAR=0;SRF=70;SRP=155.013;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:37:21,10,5:21:822:10,5:391,202:-25.8166,0,-64.5636,-15.4819,-50.9189,-81.5602 0|0:39:14,12,13:14:546:12,13:442,528:-39.353,-7.44975,-48.7039,0,-8.76064,-40.973 0|1:59:22,30,7:22:872:30,7:1167,255:-89.2974,0,-62.7701,-75.0997,-50.9838,-144.772 0|1:30:13,16,1:13:518:16,1:624,41:-47.3594,0,-37.8283,-47.8876,-39.2599,-90.2457 dDocent_Contig_6993 62 . G A 39.7362 . AB=0.285714;ABP=5.80219;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X;DP=40;DPB=40;DPRA=0.636364;EPP=7.35324;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=1503;RO=38;RPL=2;RPP=7.35324;RPPR=85.5263;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9383 0/0:21:21,0:21:851:0:0:0,-6.32163,-76.9015 0/0:8:8,0:8:307:0:0:0,-2.40824,-27.9856 0/1:7:5,2:5:205:2:82:-5.67247,0,-16.7278 dDocent_Contig_6994 62 . A G 991.986 . AB=0.333333;ABP=31.2394;AC=4;AF=0.5;AN=8;AO=39;CIGAR=1X;DP=117;DPB=117;DPRA=0;EPP=87.6977;EPPR=172.385;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1560;QR=3096;RO=78;RPL=39;RPP=87.6977;RPPR=172.385;RPR=0;RUN=1;SAF=39;SAP=87.6977;SAR=0;SRF=78;SRP=172.385;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:20,4:20:786:4:153:-6.9123,0,-63.8347 0/1:47:21,26:21:825:26:1044:-80.1022,0,-60.4108 0/1:37:31,6:31:1246:6:246:-11.382,0,-101.274 0/1:9:6,3:6:239:3:117:-8.20002,0,-19.1752 dDocent_Contig_6996 1 . N G 82.981 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=89;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:89:-8.29756,-0.90309,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_6998 11 . T C 459.405 . AB=0.20354;ABP=89.2735;AC=3;AF=0.375;AN=8;AO=25;CIGAR=1X;DP=161;DPB=161;DPRA=0;EPP=57.2971;EPPR=298.331;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.64;PAIREDR=0.580882;PAO=0;PQA=0;PQR=0;PRO=0;QA=1015;QR=5445;RO=136;RPL=0;RPP=57.2971;RPPR=298.331;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=136;SRP=298.331;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:61:50,11:50:1997:11:447:-22.2227,0,-161.557 0/0:48:46,2:46:1841:2:79:0,-6.9522,-158.402 0/1:42:33,9:33:1323:9:366:-20.6613,0,-106.686 0/1:10:7,3:7:284:3:123:-8.45449,0,-22.9235 dDocent_Contig_6999 20 . A C 967.819 . AB=0.393617;ABP=12.2506;AC=4;AF=0.5;AN=8;AO=37;CIGAR=1X;DP=94;DPB=94;DPRA=0;EPP=83.3548;EPPR=126.784;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.945946;PAIREDR=0.964912;PAO=0;PQA=0;PQR=0;PRO=0;QA=1456;QR=2233;RO=57;RPL=0;RPP=83.3548;RPPR=126.784;RPR=37;RUN=1;SAF=37;SAP=83.3548;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:43:29,14:29:1130:14:558:-37.616,0,-89.0429 0/1:24:12,12:12:475:12:452:-33.7913,0,-35.8723 0/1:19:13,6:13:512:6:244:-16.6193,0,-40.7058 0/1:8:3,5:3:116:5:202:-16.1533,0,-8.40878 dDocent_Contig_7000 98 . N A 110.264 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=3;CIGAR=3X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=111;QR=0;RO=0;RPL=3;RPP=9.52472;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. 1|1:2:0,2:0:0:2:74:-7.02588,-0.60206,0 .:.:.:.:.:.:.:. 1|1:1:0,1:0:0:1:37:-3.69783,-0.30103,0 dDocent_Contig_7001 12 . G T 651.086 . AB=0.27;ABP=48.9587;AC=2;AF=0.25;AN=8;AO=34;CIGAR=1X;DP=255;DPB=255;DPRA=0;EPP=76.8404;EPPR=482.906;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.9819;PAO=0;PQA=0;PQR=0;PRO=0;QA=1369;QR=8823;RO=221;RPL=0;RPP=76.8404;RPPR=482.906;RPR=34;RUN=1;SAF=34;SAP=76.8404;SAR=0;SRF=221;SRP=482.906;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:67:52,15:52:2094:15:607:-34.7988,0,-168.47 0/0:84:82,2:82:3257:2:77:0,-17.9783,-285.884 0/0:71:66,5:66:2634:5:204:0,-2.6291,-218.435 0/1:33:21,12:21:838:12:481:-33.7077,0,-65.7969 dDocent_Contig_7002 56 . C T 432.491 . AB=0.3;ABP=23.8564;AC=2;AF=0.25;AN=8;AO=20;CIGAR=1X;DP=122;DPB=122;DPRA=3.05556;EPP=46.4397;EPPR=224.5;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=783;QR=4027;RO=102;RPL=20;RPP=46.4397;RPPR=224.5;RPR=0;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=102;SRP=224.5;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:50:38,12:38:1494:12:469:-27.5,0,-119.658 0/0:50:48,2:48:1889:2:72:0,-8.21513,-163.385 0/0:12:12,0:12:487:0:0:0,-3.61236,-44.1815 0/1:10:4,6:4:157:6:242:-19.147,0,-11.4961 dDocent_Contig_7003 45 . C T 553.618 . AB=0.296296;ABP=32.2045;AC=2;AF=0.25;AN=8;AO=24;CIGAR=1X;DP=155;DPB=155;DPRA=1.09459;EPP=55.1256;EPPR=287.473;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=916;QR=5218;RO=131;RPL=0;RPP=55.1256;RPPR=287.473;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=131;SRP=287.473;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:53:53,0:53:2127:0:0:0,-15.9546,-191.607 0/0:21:21,0:21:845:0:0:0,-6.32163,-76.3632 0/1:38:34,4:34:1358:4:160:-3.34487,0,-111.042 0/1:43:23,20:23:888:20:756:-55.41,0,-67.2762 dDocent_Contig_7004 152 . C A 356.286 . AB=0.326087;ABP=15.095;AC=1;AF=0.125;AN=8;AO=17;CIGAR=1X;DP=122;DPB=122;DPRA=1.54167;EPP=39.9253;EPPR=231.015;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=644;QR=4193;RO=105;RPL=0;RPP=39.9253;RPPR=231.015;RPR=17;RUN=1;SAF=0;SAP=39.9253;SAR=17;SRF=0;SRP=231.015;SRR=105;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:32:32,0:32:1268:0:0:0,-9.63296,-114.39 0/1:46:31,15:31:1252:15:565:-37.3274,0,-99.1018 0/0:28:26,2:26:1041:2:79:0,-0.931595,-86.4853 0/0:16:16,0:16:632:0:0:0,-4.81648,-57.211 dDocent_Contig_7005 14 . A G 13354.9 . AB=0.656394;ABP=140.89;AC=4;AF=0.5;AN=8;AO=426;CIGAR=1X4M;DP=649;DPB=649;DPRA=0;EPP=928.058;EPPR=372.755;GTI=0;LEN=1;MEANALT=2.75;MQM=60;MQMR=59.3582;NS=4;NUMALT=2;ODDS=0;PAIRED=0.983568;PAIREDR=0.507463;PAO=0;PQA=0;PQR=0;PRO=0;QA=17033;QR=7967;RO=201;RPL=0;RPP=928.058;RPPR=439.476;RPR=426;RUN=1;SAF=426;SAP=928.058;SAR=0;SRF=193;SRP=372.755;SRR=8;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:181:55,3,121:55:2194:3,121:116,4842:-382.335,-389.366,-569.144,0,-171.198,-144.299 0|1:147:47,0,99:47:1870:0,99:0,3967:-312.674,-326.823,-480.791,0,-153.977,-124.175 0|1:199:52,14,131:52:2055:14,131:560,5246:-416.501,-386.024,-548.18,0,-120.233,-126.931 0|1:122:47,0,75:47:1848:0,75:0,2978:-231.376,-245.525,-397.523,0,-152.393,-129.816 dDocent_Contig_7006 9 . T G 388.114 . AB=0.207921;ABP=77.8508;AC=2;AF=0.25;AN=8;AO=24;CIGAR=1X;DP=260;DPB=260;DPRA=0.853881;EPP=55.1256;EPPR=515.478;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.991525;PAO=0;PQA=0;PQR=0;PRO=0;QA=916;QR=9024;RO=236;RPL=0;RPP=55.1256;RPPR=515.478;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=236;SRP=515.478;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:73:73,0:73:2792:0:0:0,-21.9752,-251.46 0/0:86:83,3:83:3177:3:117:0,-14.9782,-275.173 0/1:81:66,15:66:2520:15:571:-27.3457,0,-202.617 0/1:20:14,6:14:535:6:228:-14.8636,0,-42.4718 dDocent_Contig_7007 98 . N T 144.575 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=5;CIGAR=1X;DP=5;DPB=5;DPRA=0;EPP=13.8677;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=1.69407e-21;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=146;QR=0;RO=0;RPL=5;RPP=13.8677;RPPR=0;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1:0,1:0:0:1:35:-3.49863,-0.30103,0 ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:93:-8.67784,-0.90309,0 1/1:1:0,1:0:0:1:18:-1.79997,-0.30103,0 dDocent_Contig_7008 76 . G C 334.873 . AB=0.8;ABP=14.7363;AC=1;AF=0.125;AN=8;AO=15;CIGAR=1X;DP=114;DPB=114;DPRA=3.22222;EPP=35.5824;EPPR=217.986;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=545;QR=3556;RO=99;RPL=15;RPP=35.5824;RPPR=217.986;RPR=0;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=99;SRP=217.986;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:3,12:3:111:12:434:-34.8853,0,-5.83847 0/0:72:69,3:69:2473:3:111:0,-11.3202,-212.459 0/0:18:18,0:18:650:0:0:0,-5.41854,-58.8308 0/0:9:9,0:9:322:0:0:0,-2.70927,-29.3218 dDocent_Contig_7009 72 . A G 760.245 . AB=0.432432;ABP=5.94472;AC=4;AF=0.5;AN=8;AO=32;CIGAR=1X;DP=74;DPB=74;DPRA=0;EPP=72.4974;EPPR=43.5445;GTI=0;LEN=1;MEANALT=1;MQM=59.9062;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.595238;PAO=0;PQA=0;PQR=0;PRO=0;QA=1159;QR=1387;RO=42;RPL=32;RPP=72.4974;RPPR=94.2121;RPR=0;RUN=1;SAF=32;SAP=72.4974;SAR=0;SRF=35;SRP=43.5445;SRR=7;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:14,16:14:479:16:583:-43.775,0,-34.4049 0/1:14:6,8:6:169:8:283:-21.5941,0,-11.2738 0/1:19:13,6:13:420:6:222:-14.6185,0,-32.3902 0/1:11:9,2:9:319:2:71:-3.43073,0,-25.7401 dDocent_Contig_7010 28 . G A 409.324 . AB=0.293103;ABP=24.5753;AC=2;AF=0.25;AN=8;AO=17;CIGAR=1X;DP=120;DPB=120;DPRA=0.935484;EPP=39.9253;EPPR=226.672;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=677;QR=3982;RO=103;RPL=0;RPP=39.9253;RPPR=226.672;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=103;SRP=226.672;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:39:24,15:24:943:15:596:-42.24,0,-73.4354 0/0:45:45,0:45:1722:0:0:0,-13.5463,-155.21 0/1:19:17,2:17:658:2:81:-1.96616,0,-53.8271 0/0:17:17,0:17:659:0:0:0,-5.11751,-59.6419 dDocent_Contig_7011 19 . T A 96.5576 . AB=0.333333;ABP=5.9056;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=70;DPB=70;DPRA=0.944444;EPP=13.8677;EPPR=144.156;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=203;QR=2602;RO=65;RPL=0;RPP=13.8677;RPPR=144.156;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=65;SRP=144.156;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:22:21,1:21:850:1:41:0,-2.52809,-72.7171 0/0:33:33,0:33:1311:0:0:0,-9.93399,-118.253 0/1:12:8,4:8:318:4:162:-11.3546,0,-25.3739 0/0:3:3,0:3:123:0:0:0,-0.90309,-11.4648 dDocent_Contig_7012 58 . A G 184.699 . AB=0.219512;ABP=31.0276;AC=2;AF=0.25;AN=8;AO=9;CIGAR=1X;DP=123;DPB=123;DPRA=0.5;EPP=22.5536;EPPR=250.558;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=358;QR=4399;RO=114;RPL=9;RPP=22.5536;RPPR=250.558;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=114;SRP=250.558;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:42:42,0:42:1626:0:0:0,-12.6433,-146.582 0/0:40:40,0:40:1580:0:0:0,-12.0412,-142.442 0/1:29:21,8:21:786:8:317:-20.1656,0,-62.3274 0/1:12:11,1:11:407:1:41:-0.482207,0,-33.3483 dDocent_Contig_7013 23 . C T 89.8875 . AB=0.132075;ABP=127.645;AC=3;AF=0.375;AN=8;AO=14;CIGAR=1X;DP=153;DPB=153;DPRA=0.751773;EPP=33.4109;EPPR=302.673;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.978261;PAO=0;PQA=0;PQR=0;PRO=0;QA=500;QR=5480;RO=138;RPL=0;RPP=33.4109;RPPR=302.673;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=138;SRP=302.673;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:47:47,0:47:1888:0:0:0,-14.1484,-170.116 0/1:48:41,7:41:1614:7:259:-9.21588,0,-131.041 0/1:44:38,5:38:1499:5:175:-3.02338,0,-122.13 0/1:14:12,2:12:479:2:66:-2.05211,0,-39.2459 dDocent_Contig_7014 118 . G C 140.307 . AB=0.363636;ABP=6.56362;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=46;DPB=46;DPRA=2.75;EPP=20.3821;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=245;QR=1269;RO=38;RPL=0;RPP=20.3821;RPPR=85.5263;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=85.5263;SRR=38;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:14:14,0:14:466:0:0:0,-4.21442,-42.2595 0/1:22:14,8:14:473:8:245:-15.7291,0,-36.2715 0/0:9:9,0:9:298:0:0:0,-2.70927,-27.1435 0/0:1:1,0:1:32:0:0:0,-0.30103,-3.19931 dDocent_Contig_7015 28 . A C 76.926 . AB=0.222222;ABP=15.074;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=53;DPB=53;DPRA=4.88889;EPP=13.8677;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=197;QR=1879;RO=48;RPL=0;RPP=13.8677;RPPR=107.241;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:14,4:14:544:4:157:-9.09026,0,-43.8793 0/0:26:25,1:25:980:1:40:0,-3.8311,-84.5013 0/0:7:7,0:7:277:0:0:0,-2.10721,-25.2983 0/0:2:2,0:2:78:0:0:0,-0.60206,-7.4033 dDocent_Contig_7016 114 . T A 38.0725 . AB=0.166667;ABP=26.1727;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=64;DPB=64;DPRA=1.8;EPP=11.6962;EPPR=133.299;GTI=0;LEN=1;MEANALT=1;MQM=41;MQMR=57.8667;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=0;PAIREDR=0.7;PAO=0;PQA=0;PQR=0;PRO=0;QA=142;QR=2061;RO=60;RPL=0;RPP=11.6962;RPPR=133.299;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=133.299;SRR=60;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:12:12,0:12:415:0:0:0,-3.61236,-37.6066 0/1:24:20,4:20:672:4:142:-5.50615,0,-53.5515 0/0:16:16,0:16:561:0:0:0,-4.81648,-50.8068 0/0:12:12,0:12:413:0:0:0,-3.61236,-37.4903 dDocent_Contig_7017 32 . C T 1337.9 . 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C A 62.699 . AB=0.272727;ABP=7.94546;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X;DP=175;DPB=175;DPRA=0;EPP=22.5536;EPPR=329.568;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=0.813253;PAO=0;PQA=0;PQR=0;PRO=0;QA=362;QR=6602;RO=166;RPL=0;RPP=22.5536;RPPR=363.475;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=162;SRP=329.568;SRR=4;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:57:54,3:54:2166:3:122:0,-5.78622,-183.737 0/0:70:69,1:69:2779:1:41:0,-16.9775,-246.121 0/0:37:35,2:35:1338:2:78:0,-3.73481,-113.271 0/1:11:8,3:8:319:3:121:-7.96887,0,-25.765 dDocent_Contig_7020 129 . A G 61.8578 . AB=0.130435;ABP=57.5803;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=146;DPB=146;DPRA=1.38;EPP=16.0391;EPPR=307.016;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.992857;PAO=0;PQA=0;PQR=0;PRO=0;QA=234;QR=4457;RO=140;RPL=0;RPP=16.0391;RPPR=307.016;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=307.016;SRR=140;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:46:40,6:40:1302:6:234:-7.58372,0,-103.624 0/0:34:34,0:34:1039:0:0:0,-10.235,-93.7929 0/0:40:40,0:40:1281:0:0:0,-12.0412,-115.575 0/0:26:26,0:26:835:0:0:0,-7.82678,-75.4484 dDocent_Contig_7021 131 . A G 32.5701 . AB=0.176471;ABP=18.4661;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=42;DPB=42;DPRA=2.04;EPP=9.52472;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=108;QR=1494;RO=39;RPL=0;RPP=9.52472;RPPR=87.6977;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=87.6977;SRR=39;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5,0:5:185:0:0:0,-1.50515,-17.0083 0/0:15:15,0:15:582:0:0:0,-4.51545,-52.7231 0/1:17:14,3:14:536:3:108:-4.95567,0,-43.4642 0/0:5:5,0:5:191:0:0:0,-1.50515,-17.5584 dDocent_Contig_7022 10 . A G 124.651 . AB=0.170732;ABP=41.6201;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X;DP=142;DPB=142;DPRA=2.08696;EPP=22.5536;EPPR=291.816;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=369;QR=5312;RO=133;RPL=0;RPP=22.5536;RPPR=291.816;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=133;SRP=291.816;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:41:34,7:34:1372:7:287:-13.863,0,-111.393 0/0:55:53,2:53:2142:2:82:0,-8.77697,-185.171 0/0:39:39,0:39:1532:0:0:0,-11.7402,-138.118 0/0:7:7,0:7:266:0:0:0,-2.10721,-24.2963 dDocent_Contig_7024 33 . G T 269.152 . AB=0.366667;ABP=7.64277;AC=2;AF=0.25;AN=8;AO=11;CIGAR=1X;DP=62;DPB=62;DPRA=0.9375;EPP=26.8965;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.784314;PAO=0;PQA=0;PQR=0;PRO=0;QA=429;QR=2025;RO=51;RPL=0;RPP=26.8965;RPPR=113.755;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:20:20,0:20:795:0:0:0,-6.0206,-71.8664 0/0:12:12,0:12:468:0:0:0,-3.61236,-42.4683 0/1:10:6,4:6:240:4:151:-10.9454,0,-18.9642 0/1:20:13,7:13:522:7:278:-19.3678,0,-41.3056 dDocent_Contig_7025 140 . C T 325.539 . AB=0;ABP=0;AC=2;AF=0.25;AN=8;AO=9;CIGAR=1X;DP=74;DPB=74;DPRA=0.415385;EPP=22.5536;EPPR=144.156;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=351;QR=2467;RO=65;RPL=0;RPP=22.5536;RPPR=144.156;RPR=9;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=144.156;SRR=65;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:9:0,9:0:0:9:351:-31.9518,-2.70927,0 0/0:30:30,0:30:1156:0:0:0,-9.0309,-104.339 0/0:20:20,0:20:746:0:0:0,-6.0206,-67.4609 0/0:15:15,0:15:565:0:0:0,-4.51545,-51.1898 dDocent_Contig_7026 42 . G A 357.861 . AB=0.52;ABP=3.09716;AC=2;AF=0.25;AN=8;AO=13;CIGAR=1X;DP=32;DPB=32;DPRA=3.57143;EPP=31.2394;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=510;QR=734;RO=19;RPL=0;RPP=31.2394;RPPR=44.2683;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:7,12:7:270:12:470:-36.929,0,-18.9415 0/1:6:5,1:5:195:1:40:-2.1895,0,-16.1175 0/0:6:6,0:6:231:0:0:0,-1.80618,-21.1563 0/0:1:1,0:1:38:0:0:0,-0.30103,-3.79727 dDocent_Contig_7027 49 . T C 2890.09 . AB=0.487562;ABP=3.28038;AC=4;AF=0.5;AN=8;AO=98;CIGAR=2X4M;DP=201;DPB=201;DPRA=0;EPP=215.815;EPPR=194.1;GTI=0;LEN=1;MEANALT=3;MQM=59.0612;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.979592;PAIREDR=0.988636;PAO=0;PQA=0;PQR=0;PRO=0;QA=3921;QR=3409;RO=88;RPL=98;RPP=215.815;RPPR=194.1;RPR=0;RUN=1;SAF=98;SAP=215.815;SAR=0;SRF=88;SRP=194.1;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:61:29,1,30:29:1115:1,30:39,1202:-90.3477,-95.872,-187.085,0,-88.3558,-82.5311 0|1:64:21,6,35:21:812:6,35:237,1400:-108.868,-95.6887,-160.57,0,-47.1803,-56.1473 0|1:59:29,2,26:29:1134:2,26:72,1037:-76.6452,-79.5041,-172.127,0,-87.3748,-85.4196 0|1:17:9,0,7:9:348:0,7:0,282:-20.5457,-23.255,-51.8255,0,-28.5833,-26.4761 dDocent_Contig_7028 41 . T C 377.554 . AB=0.271186;ABP=29.8409;AC=3;AF=0.375;AN=8;AO=21;CIGAR=1X;DP=127;DPB=127;DPRA=0;EPP=48.6112;EPPR=233.186;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=853;QR=4231;RO=106;RPL=0;RPP=48.6112;RPPR=233.186;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=106;SRP=233.186;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:68:63,5:63:2528:5:205:0,-1.63503,-208.817 0/1:15:8,7:8:322:7:284:-21.418,0,-24.8324 0/1:20:13,7:13:503:7:282:-19.7315,0,-39.5901 0/1:24:22,2:22:878:2:82:-0.554958,0,-72.1005 dDocent_Contig_7030 1 . N A 626.334 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=17;CIGAR=1X;DP=17;DPB=17;DPRA=0;EPP=39.9253;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=678;QR=0;RO=0;RPL=0;RPP=39.9253;RPPR=0;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:5:0,5:0:0:5:201:-18.4705,-1.50515,0 1/1:10:0,10:0:0:10:395:-35.9056,-3.0103,0 1/1:2:0,2:0:0:2:82:-7.77968,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_7031 58 . C T 198.057 . AB=0.333333;ABP=8.80089;AC=2;AF=0.25;AN=8;AO=8;CIGAR=1X;DP=49;DPB=49;DPRA=0.96;EPP=20.3821;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.97561;PAO=0;PQA=0;PQR=0;PRO=0;QA=315;QR=1618;RO=41;RPL=8;RPP=20.3821;RPPR=92.0407;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:16:16,0:16:625:0:0:0,-4.81648,-56.5801 0/0:9:9,0:9:359:0:0:0,-2.70927,-32.6722 0/1:12:5,7:5:199:7:275:-21.502,0,-14.676 0/1:12:11,1:11:435:1:40:-0.383319,0,-35.8882 dDocent_Contig_7032 7 . T C 1887.3 . AB=0.405714;ABP=16.5231;AC=4;AF=0.5;AN=8;AO=71;CIGAR=1X;DP=175;DPB=175;DPRA=0;EPP=157.185;EPPR=228.843;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2735;QR=3946;RO=104;RPL=0;RPP=157.185;RPPR=228.843;RPR=71;RUN=1;SAF=71;SAP=157.185;SAR=0;SRF=104;SRP=228.843;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:71:37,34:37:1398:34:1310:-96.8145,0,-104.725 0/1:49:41,8:41:1556:8:312:-13.6945,0,-125.559 0/1:33:6,27:6:230:27:1036:-83.6138,0,-11.1327 0/1:22:20,2:20:762:2:77:-0.686482,0,-62.2851 dDocent_Contig_7034 14 . A T 878.951 . AB=0.324074;ABP=32.0437;AC=4;AF=0.5;AN=8;AO=35;CIGAR=1X;DP=108;DPB=108;DPRA=0;EPP=79.0118;EPPR=159.356;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1405;QR=2866;RO=72;RPL=0;RPP=79.0118;RPPR=159.356;RPR=35;RUN=1;SAF=35;SAP=79.0118;SAR=0;SRF=72;SRP=159.356;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:40:24,15:24:974:15:601:-42.2771,0,-75.8069 0/1:36:28,8:28:1106:8:319:-18.2395,0,-88.984 0/1:20:17,3:17:664:3:123:-5.44419,0,-54.0655 0/1:12:3,9:3:122:9:362:-29.3322,0,-7.76013 dDocent_Contig_7035 10 . T C 2314.7 . AB=0.679612;ABP=31.8719;AC=5;AF=0.625;AN=8;AO=74;CIGAR=1X;DP=107;DPB=107;DPRA=0;EPP=163.699;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2962;QR=1303;RO=33;RPL=0;RPP=163.699;RPPR=74.6689;RPR=74;RUN=1;SAF=74;SAP=163.699;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:6,17:6:242:17:689:-55.4129,0,-15.2336 0/1:35:16,19:16:638:19:752:-57.464,0,-47.2207 0/1:45:11,34:11:423:34:1359:-109.024,0,-24.8745 1/1:4:0,4:0:0:4:162:-14.967,-1.20412,0 dDocent_Contig_7038 18 . G A 199.435 . AB=0.12;ABP=34.3664;AC=0;AF=0;AN=8;AO=3;CIGAR=2M1X4M1X2M1X9M;DP=85;DPB=81.75;DPRA=0;EPP=9.52472;EPPR=139.813;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=4;NUMALT=5;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=119;QR=2447;RO=63;RPL=0;RPP=9.52472;RPPR=139.813;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=63;SRP=139.813;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:11:8,0,0,2,0,0:8:308:0,0,2,0,0:0,0,82,0,0:-4.36651,-6.77475,-32.0461,-6.77475,-32.0461,-32.0461,0,-25.2738,-25.2738,-24.6717,-6.77475,-32.0461,-32.0461,-25.2738,-32.0461,-6.77475,-32.0461,-32.0461,-25.2738,-32.0461,-32.0461 0|0:25:13,0,0,6,3,3:13:501:0,0,6,3,3:0,0,234,118,119:-15.3183,-19.2317,-60.3639,-19.2317,-60.3639,-60.3639,0,-41.1294,-41.1294,-39.3232,-9.52522,-50.6571,-50.6571,-31.4223,-49.754,-9.43425,-50.5668,-50.5668,-31.3318,-40.8597,-49.6637 0|0:32:27,4,0,0,1,0:27:1058:4,0,0,1,0:163,0,0,41,0:-5.31754,0,-85.7758,-13.4453,-86.9799,-100.429,-13.4453,-86.9799,-100.429,-100.429,-10.0608,-83.5952,-97.0445,-97.0445,-96.7435,-13.4453,-86.9799,-100.429,-100.429,-97.0445,-100.429 0|0:17:15,0,2,0,0,0:15:580:0,2,0,0,0:0,78,0,0,0:-2.28579,-6.80124,-54.4359,0,-48.0239,-47.4219,-6.80124,-54.4359,-48.0239,-54.4359,-6.80124,-54.4359,-48.0239,-54.4359,-54.4359,-6.80124,-54.4359,-48.0239,-54.4359,-54.4359,-54.4359 dDocent_Contig_7039 166 . G A 91.5269 . AB=0.333333;ABP=5.9056;AC=2;AF=0.25;AN=8;AO=4;CIGAR=1X;DP=34;DPB=34;DPRA=0.545455;EPP=11.6962;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=161;QR=1175;RO=30;RPL=4;RPP=11.6962;RPPR=68.1545;RPR=0;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=68.1545;SRR=30;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:4:1,3:1:30:3:123:-10.2607,0,-1.79545 0/0:8:8,0:8:321:0:0:0,-2.40824,-29.2574 0/1:8:7,1:7:278:1:38:-1.38903,0,-22.9816 0/0:14:14,0:14:546:0:0:0,-4.21442,-49.482 dDocent_Contig_7040 30 . T C 317.898 . AB=0.202532;ABP=63.7291;AC=2;AF=0.25;AN=8;AO=16;CIGAR=1X;DP=131;DPB=131;DPRA=1.51923;EPP=37.7539;EPPR=250.558;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=647;QR=4560;RO=114;RPL=0;RPP=37.7539;RPPR=250.558;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=114;SRP=250.558;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:67:54,13:54:2163:13:525:-27.4277,0,-174.663 0/0:32:32,0:32:1275:0:0:0,-9.63296,-115.007 0/0:20:19,0:19:757:0:0:0,-5.71957,-68.1999 0/1:12:9,3:9:365:3:122:-7.76013,0,-29.6021 dDocent_Contig_7041 89 . C T 195.305 . AB=0.3;ABP=13.4334;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X;DP=84;DPB=84;DPRA=1.66667;EPP=22.5536;EPPR=165.871;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=329;QR=2717;RO=75;RPL=9;RPP=22.5536;RPPR=165.871;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=75;SRP=165.871;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:21,9:21:765:9:329:-20.9284,0,-60.1455 0/0:17:17,0:17:601:0:0:0,-5.11751,-54.4165 0/0:21:21,0:21:770:0:0:0,-6.32163,-69.6281 0/0:16:16,0:16:581:0:0:0,-4.81648,-52.6244 dDocent_Contig_7042 81 . A T 2094.67 . AB=0.444444;ABP=8.55962;AC=4;AF=0.5;AN=8;AO=92;CIGAR=1X;DP=207;DPB=207;DPRA=0;EPP=202.786;EPPR=250.558;GTI=0;LEN=1;MEANALT=1.25;MQM=59.9239;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.978261;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3086;QR=3703;RO=114;RPL=92;RPP=202.786;RPPR=250.558;RPR=0;RUN=1;SAF=92;SAP=202.786;SAR=0;SRF=114;SRP=250.558;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:72:33,39:33:1087:39:1318:-97.2436,0,-76.4582 0/1:90:49,40:49:1609:40:1349:-94.834,0,-118.231 0/1:37:27,10:27:851:10:326:-18.5176,0,-65.7477 0/1:8:5,3:5:156:3:93:-6.26984,0,-11.9397 dDocent_Contig_7043 8 . T C 91.0542 . AB=0.263158;ABP=12.2676;AC=2;AF=0.25;AN=8;AO=5;CIGAR=1X;DP=70;DPB=70;DPRA=0.372549;EPP=13.8677;EPPR=144.156;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=194;QR=2512;RO=65;RPL=0;RPP=13.8677;RPPR=144.156;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=65;SRP=144.156;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:19:19,0:19:737:0:0:0,-5.71957,-66.6607 0/0:32:32,0:32:1231:0:0:0,-9.63296,-111.085 0/1:12:10,2:10:388:2:78:-3.79111,0,-31.6657 0/1:7:4,3:4:156:3:116:-8.71049,0,-12.3101 dDocent_Contig_7044 107 . N A 103.54 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=104;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:69:-6.55266,-0.60206,0 ./.:.:.:.:.:.:.:. 1/1:1:0,1:0:0:1:35:-3.49863,-0.30103,0 dDocent_Contig_7045 13 . G C 2627.04 . AB=0.325843;ABP=73.3514;AC=3;AF=0.375;AN=8;AO=87;CIGAR=1M1X3M;DP=267;DPB=260.8;DPRA=0;EPP=191.928;EPPR=326.56;GTI=0;LEN=1;MEANALT=2;MQM=59.6552;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3410;QR=5578;RO=149;RPL=0;RPP=191.928;RPPR=326.56;RPR=87;RUN=1;SAF=87;SAP=191.928;SAR=0;SRF=149;SRP=326.56;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:111:49,3,59:49:1831:3,59:118,2296:-173.654,-178.698,-327.711,0,-140.197,-132.144 0|0:86:62,18,6:62:2318:18,6:668,241:-35.9757,0,-184.367,-34.7728,-169.924,-222.78 0|1:37:19,6,12:19:722:6,12:208,475:-33.4069,-22.237,-79.633,0,-42.3392,-55.6246 0|1:33:19,4,10:19:707:4,10:151,398:-27.0653,-20.4145,-77.0628,0,-45.4876,-54.8545 dDocent_Contig_7046 146 . C A 942.038 . AB=0.44086;ABP=5.83555;AC=3;AF=0.375;AN=8;AO=42;CIGAR=1X;DP=110;DPB=110;DPRA=0;EPP=94.2121;EPPR=150.67;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1441;QR=2324;RO=68;RPL=0;RPP=94.2121;RPPR=150.67;RPR=42;RUN=1;SAF=0;SAP=94.2121;SAR=42;SRF=0;SRP=150.67;SRR=68;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:34:26,8:26:873:8:278:-15.123,0,-68.64 0/1:20:15,5:15:519:5:161:-8.78599,0,-41.0178 0/1:39:11,28:11:385:28:968:-75.6927,0,-23.2457 0/0:17:16,1:16:547:1:34:0,-1.7186,-46.1555 dDocent_Contig_7047 17 . A G 107.518 . AB=0.115385;ABP=136.639;AC=1;AF=0.125;AN=8;AO=12;CIGAR=1X;DP=299;DPB=299;DPRA=1.6;EPP=29.068;EPPR=626.223;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=479;QR=11483;RO=287;RPL=0;RPP=29.068;RPPR=626.223;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=287;SRP=626.223;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:104:92,12:92:3689:12:479:-12.1497,0,-300.712 0/0:91:91,0:91:3639:0:0:0,-27.3937,-327.524 0/0:76:76,0:76:3036:0:0:0,-22.8783,-273.31 0/0:28:28,0:28:1119:0:0:0,-8.42884,-100.992 dDocent_Contig_7048 98 . N T 87.2662 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=87;QR=0;RO=0;RPL=3;RPP=9.52472;RPPR=0;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1:0,1:0:0:1:32:-3.19931,-0.30103,0 1/1:2:0,2:0:0:2:55:-5.22451,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_7049 21 . C T 112.783 . AB=0.666667;ABP=4.45795;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=49;DPB=49;DPRA=0.418605;EPP=11.6962;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=160;QR=1798;RO=45;RPL=0;RPP=11.6962;RPPR=100.727;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:12:12,0:12:482:0:0:0,-3.61236,-43.7319 0/0:21:21,0:21:835:0:0:0,-6.32163,-75.4617 0/0:10:10,0:10:402:0:0:0,-3.0103,-36.54 0/1:6:2,4:2:79:4:160:-12.9772,0,-5.69145 dDocent_Contig_7050 7 . T A 143.647 . AB=0.222222;ABP=27.1378;AC=1;AF=0.125;AN=8;AO=12;CIGAR=1X;DP=136;DPB=136;DPRA=1.83333;EPP=29.068;EPPR=272.273;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=448;QR=4742;RO=124;RPL=0;RPP=29.068;RPPR=272.273;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=124;SRP=272.273;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:38:38,0:38:1458:0:0:0,-11.4391,-131.5 0/0:52:48,4:48:1843:4:153:0,-1.51195,-151.977 0/1:36:28,8:28:1057:8:295:-16.0637,0,-84.5978 0/0:10:10,0:10:384:0:0:0,-3.0103,-34.9159 dDocent_Contig_7051 39 . C T 2058.07 . AB=0.230392;ABP=260.607;AC=4;AF=0.5;AN=8;AO=94;CIGAR=1X;DP=408;DPB=408;DPRA=0;EPP=207.129;EPPR=684.853;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=2.77556e-17;PAIRED=1;PAIREDR=0.996815;PAO=0;PQA=0;PQR=0;PRO=0;QA=3720;QR=12369;RO=314;RPL=0;RPP=207.129;RPPR=684.853;RPR=94;RUN=1;SAF=94;SAP=207.129;SAR=0;SRF=314;SRP=684.853;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:102:77,25:77:3014:25:989:-58.6056,0,-240.669 0/1:143:109,34:109:4267:34:1357:-79.3444,0,-340.967 0/1:111:84,27:84:3332:27:1053:-61.6505,0,-266.537 0/1:52:44,8:44:1756:8:321:-13.6046,0,-142.61 dDocent_Contig_7052 1 . N G 75.9287 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=80;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:80:-7.59179,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_7053 26 . C T 48.4834 . AB=0.1875;ABP=16.582;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=45;DPB=45;DPRA=1.10345;EPP=9.52472;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.97619;PAO=0;PQA=0;PQR=0;PRO=0;QA=120;QR=1661;RO=42;RPL=0;RPP=9.52472;RPPR=94.2121;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:13,3:13:490:3:120:-6.37121,0,-39.6201 0/0:19:19,0:19:769:0:0:0,-5.71957,-69.5306 0/0:10:10,0:10:402:0:0:0,-3.0103,-36.5394 ./.:.:.:.:.:.:.:. dDocent_Contig_7054 42 . T A 3891.94 . AB=0.679144;ABP=55.1372;AC=4;AF=0.5;AN=8;AO=127;CIGAR=1X;DP=187;DPB=187;DPRA=0;EPP=278.787;EPPR=14.7363;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=0.65;PAO=0;PQA=0;PQR=0;PRO=0;QA=5020;QR=2421;RO=60;RPL=0;RPP=278.787;RPPR=14.7363;RPR=127;RUN=1;SAF=127;SAP=278.787;SAR=0;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:55:13,42:13:528:42:1643:-131.548,0,-31.3102 0/1:75:27,48:27:1090:48:1913:-149.798,0,-75.8087 0/1:30:5,25:5:205:25:981:-79.5535,0,-9.80411 0/1:27:15,12:15:598:12:483:-35.6929,0,-46.0292 dDocent_Contig_7055 33 . A T 66.2194 . AB=0.12069;ABP=75.4926;AC=1;AF=0.125;AN=8;AO=7;CIGAR=3X;DP=113;DPB=113;DPRA=3.16364;EPP=18.2106;EPPR=228.843;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.5962;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.980769;PAO=0;PQA=0;PQR=0;PRO=0;QA=279;QR=4082;RO=104;RPL=0;RPP=18.2106;RPPR=228.843;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=104;SRP=228.843;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:58:51,7,0:51:2016:7,0:279,0:-8.01981,0,-164.133,-23.3723,-166.241,-189.215 0|0:31:29,0,2:29:1133:0,2:0,70:0,-8.72987,-101.888,-2.68481,-96.1956,-95.5936 0|0:19:19,0,0:19:734:0,0:0,0:0,-5.71957,-66.3833,-5.71957,-66.3833,-66.3833 0|0:5:5,0,0:5:199:0,0:0,0:0,-1.50515,-18.2881,-1.50515,-18.2881,-18.2881 dDocent_Contig_7056 11 . C T 441.241 . AB=0.321429;ABP=18.5208;AC=3;AF=0.375;AN=8;AO=23;CIGAR=1X;DP=116;DPB=116;DPRA=0;EPP=52.9542;EPPR=204.957;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=918;QR=3715;RO=93;RPL=0;RPP=52.9542;RPPR=204.957;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=93;SRP=204.957;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:15,5:15:608:5:201:-12.4503,0,-49.0373 0/0:60:55,5:55:2192:5:193:0,-0.324248,-179.718 0/1:24:13,11:13:515:11:444:-33.0909,0,-39.4696 0/1:12:10,2:10:400:2:80:-3.97922,0,-32.7477 dDocent_Contig_7057 61 . A C 134.885 . AB=0.155172;ABP=62.913;AC=2;AF=0.25;AN=8;AO=13;CIGAR=1M1D3M1X;DP=122;DPB=118.5;DPRA=0;EPP=31.2394;EPPR=220.158;GTI=0;LEN=1;MEANALT=1.75;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.99;PAO=0;PQA=0;PQR=0;PRO=0;QA=515;QR=3866;RO=100;RPL=13;RPP=31.2394;RPPR=220.158;RPR=0;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=100;SRP=220.158;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:35:23,6,6:23:885:6,6:244,242:-13.2044,0,-70.8343,-0.181503,-52.6883,-71.0131 0|0:38:33,2,2:33:1285:2,2:80,77:0,-3.34117,-108.343,-3.61978,-102.624,-108.613 0|1:23:20,3,0:20:766:3,0:113,0:-3.61323,0,-62.3381,-9.63383,-63.2412,-72.4979 0|0:26:24,2,0:24:930:2,0:78,0:0,-0.423307,-76.6006,-7.22472,-77.2027,-83.6146 dDocent_Contig_7058 10 . T C 310.22 . AB=0.207792;ABP=60.1172;AC=2;AF=0.25;AN=8;AO=16;CIGAR=1X;DP=121;DPB=121;DPRA=1.75;EPP=37.7539;EPPR=228.843;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=615;QR=3992;RO=104;RPL=0;RPP=37.7539;RPPR=228.843;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=104;SRP=228.843;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:65:50,15:50:1908:15:574:-32.4166,0,-152.392 0/0:23:22,0:22:844:0:0:0,-6.62266,-76.1575 0/0:21:21,0:21:808:0:0:0,-6.32163,-73.0427 0/1:12:11,1:11:432:1:41:-0.482207,0,-35.6232 dDocent_Contig_7059 7 . T A 1094.34 . AB=0.436893;ABP=6.5732;AC=4;AF=0.5;AN=8;AO=45;CIGAR=2X2M1X;DP=103;DPB=103;DPRA=0;EPP=100.727;EPPR=128.956;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.913793;PAO=0;PQA=0;PQR=0;PRO=0;QA=1626;QR=2218;RO=58;RPL=0;RPP=100.727;RPPR=128.956;RPR=45;RUN=1;SAF=45;SAP=100.727;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:43:25,18:25:958:18:646:-45.5232,0,-73.5905 0|1:33:16,17:16:613:17:626:-46.7407,0,-45.5744 0|1:23:14,9:14:538:9:323:-22.4903,0,-41.8416 0|1:4:3,1:3:109:1:31:-1.89533,0,-8.96282 dDocent_Contig_7062 108 . A G 157.879 . 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T A 518.58 . AB=0.25;ABP=9.52472;AC=4;AF=0.5;AN=8;AO=3;CIGAR=3M1X6M1D16M;DP=82;DPB=80.7407;DPRA=0;EPP=9.52472;EPPR=92.0407;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=5;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=112;QR=1623;RO=41;RPL=0;RPP=9.52472;RPPR=92.0407;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:31:22,0,5,4,0,0:22:873:0,5,4,0,0:0,200,158,0,0:-9.8553,-16.478,-88.3431,0,-71.8673,-70.3622,-3.4784,-75.3416,-58.8658,-74.1375,-16.478,-88.3431,-71.8673,-75.3416,-88.3431,-16.478,-88.3431,-71.8673,-75.3416,-88.3431,-88.3431 0|1:12:7,0,2,0,3,0:7:276:0,2,0,3,0:0,79,0,112,0:-7.04814,-9.15535,-31.8708,-2.64575,-25.3687,-24.7666,-9.15535,-31.8708,-25.3687,-31.8708,0,-22.7077,-16.2066,-22.7077,-21.8047,-9.15535,-31.8708,-25.3687,-31.8708,-22.7077,-31.8708 0|1:29:10,1,11,0,0,5:10:397:1,11,0,0,5:40,407,0,0,198:-30.2654,-29.9795,-62.3678,0,-29.3899,-29.3739,-33.2757,-62.6689,-32.6852,-65.9645,-33.2757,-62.6689,-32.6852,-65.9645,-65.9645,-16.9741,-46.3707,-16.3891,-49.6665,-49.6665,-48.1614 0|1:10:2,2,4,0,0,1:2:77:2,4,0,0,1:73,154,0,0,41:-12.0424,-6.68727,-12.4057,0,-0.368181,-5.11799,-12.6445,-13.0077,-6.32211,-18.9666,-12.6445,-13.0077,-6.32211,-18.9666,-18.9666,-9.25689,-9.6208,-2.93307,-15.5798,-15.5798,-15.2787 dDocent_Contig_7065 29 . A G 43.5595 . AB=0.113636;ABP=117.111;AC=2;AF=0.25;AN=8;AO=11;CIGAR=1X;DP=157;DPB=157;DPRA=1.25253;EPP=26.8965;EPPR=320.045;GTI=0;LEN=1;MEANALT=1;MQM=53.7273;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.818182;PAIREDR=0.869863;PAO=0;PQA=0;PQR=0;PRO=0;QA=415;QR=5635;RO=146;RPL=0;RPP=26.8965;RPPR=320.045;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=146;SRP=320.045;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:52:46,6:46:1768:6:225:-4.67901,0,-143.702 0/1:36:32,4:32:1224:4:153:-3.06539,0,-99.6097 0/0:33:33,0:33:1282:0:0:0,-9.93399,-115.663 0/0:36:35,1:35:1361:1:37:0,-7.13925,-119.066 dDocent_Contig_7066 22 . T C 95.4032 . AB=0.123288;ABP=92.9925;AC=1;AF=0.125;AN=8;AO=14;CIGAR=1X;DP=268;DPB=268;DPRA=2.94118;EPP=33.4109;EPPR=554.564;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=567;QR=10170;RO=254;RPL=0;RPP=33.4109;RPPR=554.564;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=254;SRP=554.564;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:127:122,5:122:4880:5:202:0,-19.6693,-420.526 0/1:73:64,9:64:2557:9:365:-11.2393,0,-208.278 0/0:41:41,0:41:1647:0:0:0,-12.3422,-148.457 0/0:27:27,0:27:1086:0:0:0,-8.12781,-98.0252 dDocent_Contig_7068 15 . C T 213.057 . AB=0.211538;ABP=40.5935;AC=2;AF=0.25;AN=8;AO=18;CIGAR=1X;DP=208;DPB=208;DPRA=0;EPP=42.0968;EPPR=415.59;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=721;QR=7608;RO=190;RPL=0;RPP=42.0968;RPPR=415.59;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=190;SRP=415.59;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:58:54,4:54:2144:4:161:0,-2.58426,-178.256 0/0:98:95,3:95:3827:3:120:0,-18.3136,-333.232 0/1:37:29,8:29:1159:8:319:-17.9391,0,-93.4543 0/1:15:12,3:12:478:3:121:-6.76454,0,-38.8512 dDocent_Contig_7069 9 . G A 345.951 . AB=0.32;ABP=17.0814;AC=4;AF=0.5;AN=8;AO=16;CIGAR=1X;DP=50;DPB=50;DPRA=0;EPP=37.7539;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.875;PAIREDR=0.705882;PAO=0;PQA=0;PQR=0;PRO=0;QA=617;QR=1320;RO=34;RPL=0;RPP=37.7539;RPPR=76.8404;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:13,6:13:506:6:234:-15.7115,0,-40.1698 0/1:17:10,7:10:387:7:266:-19.1842,0,-30.07 0/1:11:9,2:9:350:2:78:-4.09214,0,-28.55 0/1:3:2,1:2:77:1:39:-2.99347,0,-6.40605 dDocent_Contig_7070 120 . A C 358.964 . AB=0.516129;ABP=3.08035;AC=1;AF=0.125;AN=8;AO=22;CIGAR=1X;DP=134;DPB=134;DPRA=0;EPP=50.7827;EPPR=246.215;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=722;QR=3768;RO=112;RPL=0;RPP=50.7827;RPPR=246.215;RPR=22;RUN=1;SAF=0;SAP=50.7827;SAR=22;SRF=0;SRP=246.215;SRR=112;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:63:59,4:59:1961:4:135:0,-6.48144,-164.28 0/1:31:15,16:15:511:16:518:-37.5954,0,-36.983 0/0:20:19,1:19:652:1:35:0,-2.52197,-55.504 0/0:20:19,1:19:644:1:34:0,-2.62169,-54.8805 dDocent_Contig_7071 17 . A G 217.639 . AB=0.3;ABP=13.4334;AC=1;AF=0.125;AN=8;AO=10;CIGAR=1X;DP=91;DPB=91;DPRA=0.895833;EPP=24.725;EPPR=178.9;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=393;QR=3183;RO=81;RPL=0;RPP=24.725;RPPR=178.9;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=81;SRP=178.9;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:33:33,0:33:1312:0:0:0,-9.93399,-118.347 0/1:30:21,9:21:826:9:357:-23.4624,0,-65.6266 0/0:15:15,0:15:588:0:0:0,-4.51545,-53.2567 0/0:13:12,1:12:457:1:36:0,-0.315115,-37.8696 dDocent_Contig_7072 42 . C T 66.8002 . AB=0;ABP=0;AC=0;AF=0;AN=8;AO=2;CIGAR=1X3M1X1M4I3M1X4M3X7M;DP=56;DPB=56.375;DPRA=1.90476;EPP=7.35324;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=6;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0.804348;PAO=0;PQA=0;PQR=0;PRO=0;QA=12;QR=1715;RO=46;RPL=2;RPP=7.35324;RPPR=102.898;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:15:10,0,4:10:371:0,4:0,137:-8.07764,-11.0879,-41.4608,0,-30.3507,-29.1466 0|0:18:15,0,1:15:557:0,1:0,38:0,-4.51545,-50.1655,-1.35401,-47.0477,-46.7467 0|0:20:18,2,0:18:679:2,0:12,0:0,-5.34181,-60.7662,-5.41854,-61.3683,-61.3752 0|0:3:3,0,0:3:108:0,0:0,0:0,-0.90309,-10.0743,-0.90309,-10.0743,-10.0743 dDocent_Contig_7073 109 . T C 463.154 . AB=0.25;ABP=63.8115;AC=2;AF=0.25;AN=8;AO=29;CIGAR=1X;DP=152;DPB=152;DPRA=3.28571;EPP=65.983;EPPR=270.101;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=954;QR=4045;RO=123;RPL=0;RPP=65.983;RPPR=270.101;RPR=29;RUN=1;SAF=0;SAP=65.983;SAR=29;SRF=0;SRP=270.101;SRR=123;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:57:48,9:48:1558:9:289:-9.16577,0,-123.341 0/1:55:36,19:36:1209:19:631:-40.5476,0,-92.5532 0/0:26:25,1:25:839:1:34:0,-4.42787,-72.4229 0/0:14:14,0:14:439:0:0:0,-4.21442,-39.8136 dDocent_Contig_7076 30 . A G 2090 . AB=0.452381;ABP=6.31921;AC=4;AF=0.5;AN=8;AO=76;CIGAR=1X1M1X;DP=168;DPB=168;DPRA=0;EPP=168.042;EPPR=200.614;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2953;QR=3609;RO=91;RPL=0;RPP=168.042;RPPR=200.614;RPR=76;RUN=1;SAF=76;SAP=168.042;SAR=0;SRF=91;SRP=200.614;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:41:23,18:23:917:18:687:-49.818,0,-70.4958 0|1:55:22,33:22:863:33:1289:-99.7292,0,-61.4271 0|1:46:28,17:28:1110:17:657:-45.5096,0,-86.2317 0|1:26:18,8:18:719:8:320:-21.3413,0,-57.2104 dDocent_Contig_7077 17 . G A 39.54 . AB=0.157895;ABP=22.325;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=77;DPB=77;DPRA=2.20833;EPP=11.6962;EPPR=161.528;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=163;QR=2905;RO=73;RPL=0;RPP=11.6962;RPPR=161.528;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=73;SRP=161.528;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:15:15,0:15:605:0:0:0,-4.51545,-54.7885 0/0:34:33,1:33:1295:1:41:0,-6.14045,-112.716 0/1:19:16,3:16:638:3:122:-5.65292,0,-52.0323 0/0:9:9,0:9:367:0:0:0,-2.70927,-33.395 dDocent_Contig_7078 107 . N G 87.7986 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=3;CIGAR=1X2M1X;DP=4;DPB=4;DPRA=1.5;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=0.333333;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=84;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:2:0,2:0:0:2:64:-6.07855,-0.60206,0 1|1:1:0,1:0:0:1:20:-1.99996,-0.30103,0 1|1:1:0,0:0:0:0:0:0,0,0 .:.:.:.:.:.:.:. dDocent_Contig_7080 159 . A T 464.83 . AB=0.25;ABP=26.8965;AC=0;AF=0;AN=8;AO=11;CIGAR=1M1X1M1X;DP=88;DPB=89.5;DPRA=2.93333;EPP=26.8965;EPPR=111.584;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=376;QR=1878;RO=50;RPL=0;RPP=26.8965;RPPR=111.584;RPR=11;RUN=1;SAF=0;SAP=26.8965;SAR=11;SRF=0;SRP=111.584;SRR=50;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:44:15,5,11,12:15:586:5,11,12:179,376,454:-32.7195,-22.6367,-69.3227,-6.73153,-40.3278,-51.6108,0,-33.6061,-17.7027,-44.5903 0|0:23:21,0,0,2:21:752:0,0,2:0,0,80:-0.667885,-6.98951,-68.254,-6.98951,-68.254,-68.254,0,-61.6605,-61.6605,-61.0584 0|0:15:14,0,0,1:14:540:0,0,1:0,0,40:0,-4.21442,-48.544,-4.21442,-48.544,-48.544,-0.519771,-45.248,-45.248,-44.947 0|0:6:0,1,0,5:0:0:1,0,5:37,0,168:-16.9713,-13.9386,-13.6375,-16.9713,-13.9386,-16.9713,-3.3968,0,-3.3968,-1.89165 dDocent_Contig_7081 9 . G A 801.751 . AB=0.380952;ABP=13.3506;AC=3;AF=0.375;AN=8;AO=33;CIGAR=1X;DP=99;DPB=99;DPRA=0;EPP=74.6689;EPPR=146.327;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.984848;PAO=0;PQA=0;PQR=0;PRO=0;QA=1259;QR=2538;RO=66;RPL=0;RPP=74.6689;RPPR=146.327;RPR=33;RUN=1;SAF=33;SAP=74.6689;SAR=0;SRF=66;SRP=146.327;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:35:23,12:23:893:12:446:-29.9473,0,-70.153 0/1:28:21,7:21:793:7:273:-16.5092,0,-63.2633 0/1:21:8,13:8:310:13:501:-39.1164,0,-21.9421 0/0:15:14,1:14:542:1:39:0,-0.618885,-45.2295 dDocent_Contig_7082 11 . G T 213.245 . AB=0.207547;ABP=42.3836;AC=1;AF=0.125;AN=8;AO=11;CIGAR=1X;DP=219;DPB=219;DPRA=0.957831;EPP=26.8965;EPPR=450.334;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=427;QR=8174;RO=206;RPL=0;RPP=26.8965;RPPR=450.334;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=206;SRP=450.334;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:53:41,11:41:1626:11:427:-22.7224,0,-130.508 0/0:63:62,0:62:2451:0:0:0,-18.6639,-220.349 0/0:63:63,0:63:2519:0:0:0,-18.9649,-226.848 0/0:40:40,0:40:1578:0:0:0,-12.0412,-142.246 dDocent_Contig_7083 8 . T A 3279.92 . AB=0.542453;ABP=6.32897;AC=4;AF=0.5;AN=8;AO=115;CIGAR=1X1M;DP=212;DPB=212;DPRA=0;EPP=252.73;EPPR=200.614;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.991304;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=4419;QR=3489;RO=91;RPL=0;RPP=252.73;RPPR=200.614;RPR=115;RUN=1;SAF=115;SAP=252.73;SAR=0;SRF=91;SRP=200.614;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:83:35,1,47:35:1335:1,47:38,1803:-137.458,-144.878,-254.096,0,-106.405,-95.3731 0|1:90:35,0,53:35:1356:0,53:0,2037:-156.685,-167.221,-278.624,0,-111.399,-95.4444 0|1:25:16,1,8:16:609:1,8:39,308:-20.4684,-22.0785,-71.7249,0,-46.7352,-47.5334 0|1:14:5,2,7:5:189:2,7:72,271:-20.7783,-16.4149,-31.3012,0,-9.63554,-13.3977 dDocent_Contig_7084 31 . A G 2242.12 . AB=0.580153;ABP=10.3204;AC=3;AF=0.5;AN=6;AO=76;CIGAR=1X;DP=131;DPB=131;DPRA=0;EPP=168.042;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.960526;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2981;QR=2211;RO=55;RPL=0;RPP=168.042;RPPR=122.441;RPR=76;RUN=1;SAF=76;SAP=168.042;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:35:14,21:14:568:21:832:-64.6555,0,-40.9267 0/1:74:29,45:29:1157:45:1750:-135.438,0,-82.1295 0/1:22:12,10:12:486:10:399:-29.6415,0,-37.4686 ./.:.:.:.:.:.:.:. dDocent_Contig_7085 10 . G A 249.213 . AB=0.233333;ABP=40.0701;AC=1;AF=0.125;AN=8;AO=22;CIGAR=1X;DP=236;DPB=236;DPRA=3.24242;EPP=50.7827;EPPR=467.705;GTI=0;LEN=1;MEANALT=1;MQM=52.6364;MQMR=58.8364;NS=4;NUMALT=1;ODDS=0;PAIRED=0.227273;PAIREDR=0.82243;PAO=0;PQA=0;PQR=0;PRO=0;QA=846;QR=8448;RO=214;RPL=0;RPP=50.7827;RPPR=467.705;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=214;SRP=467.705;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:81:76,5:76:3014:5:193:0,-6.6468,-253.614 0/0:73:70,3:70:2768:3:119:0,-12.1786,-236.521 0/1:60:46,14:46:1817:14:534:-26.6203,0,-141.76 0/0:22:22,0:22:849:0:0:0,-6.62266,-76.5237 dDocent_Contig_7086 18 . G A 2939.87 . AB=0.0528302;ABP=463.272;AC=0;AF=0;AN=8;AO=14;CIGAR=3X4M;DP=286;DPB=286;DPRA=0;EPP=25.3454;EPPR=296.159;GTI=0;LEN=1;MEANALT=4.66667;MQM=38.6429;MQMR=60;NS=4;NUMALT=4;ODDS=0;PAIRED=0.857143;PAIREDR=0.8;PAO=0;PQA=0;PQR=0;PRO=0;QA=490;QR=5107;RO=135;RPL=0;RPP=33.4109;RPPR=296.159;RPR=14;RUN=1;SAF=13;SAP=25.3454;SAR=1;SRF=135;SRP=296.159;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:88:33,9,6,2,36:33:1263:9,6,2,36:346,194,80,1331:-98.9438,-80.4905,-181.436,-93.8063,-169.071,-195.65,-102.498,-177.765,-191.077,-205.548,0,-75.2737,-88.5895,-97.2796,-92.8224 0|0:87:41,0,1,8,34:41:1536:0,1,8,34:0,40,291,1278:-92.372,-104.714,-230.515,-101.424,-227.225,-226.924,-82.2398,-208.037,-204.748,-205.629,0,-125.807,-122.518,-103.332,-115.572 0|0:90:47,3,0,4,35:47:1785:3,0,4,35:116,0,119,1299:-92.1798,-96.7996,-242.283,-106.328,-243.187,-252.714,-97.6066,-234.461,-243.988,-242.784,0,-136.889,-146.416,-137.693,-135.88 0|0:21:14,0,0,0,7:14:523:0,0,0,7:0,0,0,265:-17.8898,-22.1043,-64.9234,-22.1043,-64.9234,-64.9234,-22.1043,-64.9234,-64.9234,-64.9234,0,-43.1958,-43.1958,-43.1958,-41.0886 dDocent_Contig_7087 15 . G A 180.618 . AB=0.368421;ABP=5.8675;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=69;DPB=69;DPRA=1.14;EPP=18.2106;EPPR=137.642;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=279;QR=2418;RO=62;RPL=0;RPP=18.2106;RPPR=137.642;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:29:29,0:29:1133:0:0:0,-8.72987,-102.251 0/0:16:16,0:16:631:0:0:0,-4.81648,-57.123 0/1:19:12,7:12:451:7:279:-19.7607,0,-35.2004 0/0:5:5,0:5:203:0:0:0,-1.50515,-18.6531 dDocent_Contig_7089 7 . T C 1024.67 . AB=0.220721;ABP=153.409;AC=4;AF=0.5;AN=8;AO=49;CIGAR=1X1M1X;DP=222;DPB=222;DPRA=0;EPP=109.412;EPPR=309.188;GTI=0;LEN=1;MEANALT=2.5;MQM=57.7143;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=0.959184;PAIREDR=0.992908;PAO=0;PQA=0;PQR=0;PRO=0;QA=1874;QR=5349;RO=141;RPL=0;RPP=109.412;RPPR=309.188;RPR=49;RUN=1;SAF=49;SAP=109.412;SAR=0;SRF=141;SRP=309.188;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:58:28,17,3,10:28:1072:17,3,10:657,114,381:-44.173,0,-82.8607,-43.2526,-78.6292,-130.328,-21.3467,-56.7244,-99.9772,-106.316 0|1:73:61,9,0,3:61:2320:9,0,3:343,0,117:-9.70499,0,-187.555,-28.0678,-190.264,-218.339,-18.4478,-180.646,-208.721,-207.818 0|1:52:32,12,0,8:32:1187:12,0,8:463,0,309:-28.3491,0,-93.5003,-37.9821,-97.1127,-135.098,-12.6028,-71.7307,-109.717,-107.309 0|1:39:20,11,0,7:20:770:11,0,7:411,0,269:-27.6376,0,-59.9384,-33.6582,-63.2498,-96.8933,-11.5623,-41.163,-74.8076,-72.7003 dDocent_Contig_7090 9 . G A 30.8145 . AB=0.105263;ABP=54.4399;AC=0;AF=0;AN=8;AO=31;CIGAR=1X2M1X;DP=285;DPB=285;DPRA=0;EPP=70.3259;EPPR=519.821;GTI=0;LEN=1;MEANALT=2.5;MQM=10.1935;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0.987395;PAO=0;PQA=0;PQR=0;PRO=0;QA=1225;QR=9241;RO=238;RPL=0;RPP=70.3259;RPPR=519.821;RPR=31;RUN=1;SAF=31;SAP=70.3259;SAR=0;SRF=238;SRP=519.821;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:38:29,4,4:29:1122:4,4:160,159:-4.47873,-10.5574,-101.55,0,-89.6695,-91.188 0|0:132:111,15,5:111:4312:15,5:592,205:0,-24.6197,-374.436,-16.5458,-362.155,-369.593 0|0:63:51,11,1:51:1974:11,1:433,40:0,-8.95077,-167.77,-12.0528,-167.806,-174.128 0|0:52:47,1,4:47:1833:1,4:40,163:0,-13.5188,-163.873,-0.560546,-150.82,-150.299 dDocent_Contig_7091 7 . T C 424.692 . AB=0.0789474;ABP=120.041;AC=0;AF=0;AN=8;AO=7;CIGAR=1X3M;DP=250;DPB=250;DPRA=0.92;EPP=18.2106;EPPR=469.877;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=1.38778e-17;PAIRED=1;PAIREDR=0.995349;PAO=0;PQA=0;PQR=0;PRO=0;QA=269;QR=8189;RO=215;RPL=0;RPP=18.2106;RPPR=469.877;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=215;SRP=469.877;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:75:74,0,0,0:74:2822:0,0,0:0,0,0:0,-22.2762,-253.769,-22.2762,-253.769,-253.769,-22.2762,-253.769,-253.769,-253.769 0|0:76:53,0,6,17:53:2014:0,6,17:0,230,630:-35.5741,-51.5287,-216.697,-32.6482,-197.82,-196.013,0,-165.161,-146.284,-160.044 0|0:62:57,4,1,0:57:2167:4,1,0:152,39,0:0,-4.70098,-181.208,-13.9508,-179.206,-191.371,-17.1587,-182.412,-191.672,-194.878 0|0:37:31,0,0,6:31:1186:0,0,6:0,0,234:-10.293,-19.6249,-116.943,-19.6249,-116.943,-116.943,0,-97.7065,-97.7065,-95.9003 dDocent_Contig_7092 11 . A G 79.2872 . AB=0.0967742;ABP=46.79;AC=1;AF=0.125;AN=8;AO=3;CIGAR=3M1X4M;DP=160;DPB=157.25;DPRA=0;EPP=9.52472;EPPR=263.587;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=5;ODDS=0;PAIRED=0;PAIREDR=0.408333;PAO=0;PQA=0;PQR=0;PRO=0;QA=118;QR=4685;RO=120;RPL=0;RPP=9.52472;RPPR=263.587;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=120;SRP=263.587;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:37:22,5,3,1,0,5:22:850:5,3,1,0,5:194,93,39,0,172:-7.37038,-5.66633,-74.031,-7.33649,-68.8897,-76.3181,-12.4147,-73.9581,-75.6425,-81.9903,-13.993,-75.5362,-77.2212,-82.2913,-83.8705,0,-61.5817,-63.2642,-68.334,-69.9127,-68.4075 0|0:56:47,0,3,0,0,5:47:1841:0,3,0,0,5:0,93,0,0,197:-1.54424,-15.6926,-167.113,-9.0723,-160.464,-159.561,-15.6926,-167.113,-160.464,-167.113,-15.6926,-167.113,-160.464,-167.113,-167.113,0,-151.461,-144.813,-151.461,-151.461,-149.956 0|0:36:24,0,5,4,0,3:24:928:0,5,4,0,3:0,155,158,0,109:-3.87294,-11.0977,-87.3957,0,-76.3156,-74.8105,-5.51605,-81.7934,-70.7186,-80.5892,-11.0977,-87.3957,-76.3156,-81.7934,-87.3957,-2.16993,-78.4974,-67.4182,-72.8969,-78.4974,-77.5943 0|1:31:27,0,1,0,3,0:27:1066:0,1,0,3,0:0,29,0,118,0:-1.67751,-9.80532,-97.5532,-7.80028,-95.5192,-95.2182,-9.80532,-97.5532,-95.5192,-97.5532,0,-87.8473,-85.8138,-87.8473,-86.9442,-9.80532,-97.5532,-95.5192,-97.5532,-87.8473,-97.5532 dDocent_Contig_7093 15 . C A 284.853 . AB=0.0996503;ABP=799.333;AC=3;AF=0.375;AN=8;AO=61;CIGAR=1X;DP=682;DPB=682;DPRA=0;EPP=135.47;EPPR=1351.49;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.8309;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.990338;PAO=0;PQA=0;PQR=0;PRO=0;QA=2435;QR=24715;RO=621;RPL=0;RPP=135.47;RPPR=1351.49;RPR=61;RUN=1;SAF=61;SAP=135.47;SAR=0;SRF=621;SRP=1351.49;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:197:179,18:179:7127:18:725:-6.27276,0,-581.319 0/1:191:173,18:173:6875:18:726:-8.16935,0,-560.932 0/1:184:163,21:163:6491:21:828:-19.4411,0,-528.513 0/0:110:106,4:106:4222:4:156:0,-18.6975,-365.138 dDocent_Contig_7094 7 . T A 1805.14 . AB=0.170213;ABP=47.41;AC=0;AF=0;AN=8;AO=8;CIGAR=1X1M2X3M1X;DP=120;DPB=120;DPRA=0;EPP=20.3821;EPPR=81.1833;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=300;QR=1399;RO=36;RPL=0;RPP=20.3821;RPPR=81.1833;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:49:17,0,26,6:17:661:0,26,6:0,1020,235:-78.7656,-83.8831,-138.202,0,-54.3181,-46.4913,-64.5594,-118.878,-34.9935,-117.072 0|0:24:7,0,16,1:7:270:0,16,1:0,628,40:-49.5356,-51.6428,-73.8133,0,-22.1602,-17.3437,-48.3473,-70.5178,-18.8634,-70.2168 0|0:33:6,6,11,9:6:233:6,11,9:222,422,347:-42.182,-25.834,-43.1734,-9.34872,-10.3429,-25.1846,-15.4928,-16.4862,0,-31.9306 0|0:14:6,2,6,0:6:235:2,6,0:78,234,0:-17.4285,-12.8229,-31.546,0,-12.9142,-17.5194,-19.2346,-32.148,-19.3255,-38.5597 dDocent_Contig_7095 12 . T C 816.28 . AB=0.127778;ABP=219.627;AC=1;AF=0.125;AN=8;AO=23;CIGAR=1X3M;DP=211;DPB=211;DPRA=0;EPP=52.9542;EPPR=300.502;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=920;QR=5425;RO=137;RPL=0;RPP=52.9542;RPPR=300.502;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=137;SRP=300.502;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:79:51,8,5,15:51:2018:8,5,15:325,200,604:-34.4261,-22.9718,-186.633,-33.3045,-172.566,-197.867,0,-139.26,-149.592,-161.552 0|1:72:50,0,11,11:50:1978:0,11,11:0,443,439:-21.4624,-36.5139,-199.29,0,-162.777,-159.465,-0.361647,-163.135,-126.622,-159.824 0|0:31:25,1,0,5:25:991:1,0,5:40,0,204:-9.31225,-13.5442,-94.8049,-16.838,-95.1059,-98.401,0,-78.2726,-81.5678,-80.0626 0|0:29:11,2,7,8:11:438:2,7,8:80,277,328:-23.7803,-20.4998,-55.97,-4.28832,-33.7728,-38.2568,0,-29.491,-13.2795,-33.6747 dDocent_Contig_7096 18 . C T 115.892 . AB=0;ABP=0;AC=4;AF=0.666667;AN=6;AO=3;CIGAR=1X;DP=6;DPB=6;DPRA=0.5;EPP=9.52472;EPPR=9.52472;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=58;NS=3;NUMALT=1;ODDS=1.69407e-21;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=115;QR=121;RO=3;RPL=0;RPP=9.52472;RPPR=9.52472;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=3;SRP=9.52472;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:1:0,1:0:0:1:39:-3.89656,-0.30103,0 1/1:2:0,2:0:0:2:76:-7.21426,-0.60206,0 0/0:3:3,0:3:121:0:0:0,-0.90309,-11.2722 dDocent_Contig_7097 9 . G A 61.8579 . AB=0.133333;ABP=55.5599;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X;DP=169;DPB=169;DPRA=0.891304;EPP=22.5536;EPPR=350.446;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.9813;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.5875;PAO=0;PQA=0;PQR=0;PRO=0;QA=349;QR=6111;RO=160;RPL=0;RPP=22.5536;RPPR=350.446;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=160;SRP=350.446;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:58:56,2:56:2135:2:76:0,-10.2451,-185.165 0/1:45:39,6:39:1490:6:234:-7.88475,0,-120.827 0/0:20:19,1:19:726:1:39:0,-2.12404,-61.7714 0/0:46:46,0:46:1760:0:0:0,-13.8474,-158.655 dDocent_Contig_7098 7 . T C 88.9199 . AB=0.112903;ABP=164.4;AC=2;AF=0.25;AN=8;AO=18;CIGAR=1X;DP=368;DPB=368;DPRA=0;EPP=42.0968;EPPR=763.026;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.997143;PAO=0;PQA=0;PQR=0;PRO=0;QA=698;QR=13251;RO=350;RPL=0;RPP=42.0968;RPPR=763.026;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=350;SRP=763.026;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:158:157,1:157:5912:1:39:0,-43.6662,-528.155 0/1:85:77,8:77:2934:8:312:-2.85737,0,-238.648 0/0:86:83,3:83:3142:3:116:0,-15.0709,-272.119 0/1:39:33,6:33:1263:6:231:-9.41774,0,-102.22 dDocent_Contig_7099 93 . A T 661.83 . AB=0.371795;ABP=14.1461;AC=3;AF=0.375;AN=8;AO=29;CIGAR=1X;DP=88;DPB=88;DPRA=2.6;EPP=6.67934;EPPR=5.99147;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.724138;PAIREDR=0.762712;PAO=0;PQA=0;PQR=0;PRO=0;QA=1045;QR=2177;RO=59;RPL=29;RPP=65.983;RPPR=131.127;RPR=0;RUN=1;SAF=18;SAP=6.67934;SAR=11;SRF=34;SRP=5.99147;SRR=25;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:15,7:15:541:7:248:-16.0388,0,-42.3972 0/1:26:17,9:17:619:9:313:-20.6743,0,-48.2032 0/1:30:17,13:17:637:13:484:-34.8678,0,-48.6253 0/0:10:10,0:10:380:0:0:0,-3.0103,-34.549 dDocent_Contig_7100 80 . T C 147.563 . AB=0.103448;ABP=42.621;AC=0;AF=0;AN=8;AO=3;CIGAR=2M1X1M;DP=80;DPB=72.5;DPRA=0;EPP=9.52472;EPPR=137.642;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=6.93889e-18;PAIRED=1;PAIREDR=0.774194;PAO=0;PQA=0;PQR=0;PRO=0;QA=106;QR=2184;RO=62;RPL=3;RPP=9.52472;RPPR=137.642;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:27:23,4,0:23:809:4,0:143,0:-5.09364,0,-65.003,-12.0173,-66.2071,-77.8679 0|0:29:23,3,3:23:820:3,3:106,106:-1.70914,0,-65.9426,0,-58.2133,-65.9426 0|0:19:14,5,0:14:485:5,0:155,0:-8.53466,0,-38.2595,-12.7491,-39.7647,-52.1943 0|0:5:2,3,0:2:70:3,0:85,0:-6.42688,0,-5.14225,-7.02894,-6.04534,-12.751 dDocent_Contig_7101 49 . G A 287.795 . AB=0.254545;ABP=31.7922;AC=4;AF=0.5;AN=8;AO=14;CIGAR=1X;DP=55;DPB=55;DPRA=0;EPP=33.4109;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=551;QR=1631;RO=41;RPL=0;RPP=33.4109;RPPR=92.0407;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:11,1:11:438:1:40:-0.383319,0,-36.1613 0/1:11:8,3:8:310:3:118:-7.69087,0,-24.9444 0/1:19:12,7:12:483:7:277:-19.5803,0,-38.1017 0/1:13:10,3:10:400:3:116:-6.90363,0,-32.445 dDocent_Contig_7102 81 . G T 1233.32 . AB=0.155172;ABP=62.913;AC=0;AF=0;AN=8;AO=9;CIGAR=10M1X2M;DP=182;DPB=185.231;DPRA=0;EPP=22.5536;EPPR=176.728;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=4;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=299;QR=2746;RO=80;RPL=9;RPP=22.5536;RPPR=176.728;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=80;SRP=176.728;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:46:18,15,13,0,0:18:626:15,13,0,0:565,498,0,0:-40.8751,0,-46.3631,-5.4194,-9.99246,-52.3892,-46.2937,-50.8785,-56.3026,-97.1802,-46.2937,-50.8785,-56.3026,-97.1802,-97.1802 0|0:31:9,8,8,5,0:9:314:8,8,5,0:304,286,184,0:-22.2373,0,-23.1352,-1.62724,-2.21837,-24.7575,-9.89703,-10.4911,-12.1155,-33.9312,-24.9466,-25.5435,-27.1657,-35.4364,-50.4848 0|0:58:29,4,15,0,9:29:978:4,15,0,9:153,573,0,299:-38.302,-34.4744,-112.512,0,-66.6881,-74.7318,-47.0319,-113.716,-79.2472,-126.273,-22.8548,-89.5267,-55.0573,-102.084,-99.3748 0|0:47:24,4,14,3,0:24:828:4,14,3,0:149,453,103,0:-29.3126,-24.3302,-90.4104,0,-55.0787,-63.0658,-28.1709,-83.2499,-58.9162,-94.5477,-36.5373,-91.6145,-67.2802,-95.4508,-103.815 dDocent_Contig_7103 49 . C A 343.557 . AB=0.220779;ABP=55.1538;AC=2;AF=0.25;AN=8;AO=17;CIGAR=1X;DP=132;DPB=132;DPRA=1.4;EPP=39.9253;EPPR=252.73;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.687;NS=4;NUMALT=1;ODDS=0;PAIRED=0.941176;PAIREDR=0.86087;PAO=0;PQA=0;PQR=0;PRO=0;QA=669;QR=4599;RO=115;RPL=0;RPP=39.9253;RPPR=252.73;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=115;SRP=252.73;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:27,9:27:1089:9:361:-22.0168,0,-87.4584 0/1:41:33,8:33:1325:8:308:-15.7369,0,-107.172 0/0:34:34,0:34:1360:0:0:0,-10.235,-122.247 0/0:21:21,0:21:825:0:0:0,-6.32163,-74.568 dDocent_Contig_7104 61 . C T 239.366 . AB=0.133333;ABP=20.5268;AC=0;AF=0;AN=8;AO=2;CIGAR=1X2M2X1M1X;DP=35;DPB=35;DPRA=5;EPP=7.35324;EPPR=46.4397;GTI=0;LEN=1;MEANALT=2;MQM=40;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=80;QR=767;RO=20;RPL=2;RPP=7.35324;RPPR=46.4397;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:10:6,0,2,2:6:234:0,2,2:0,75,78:-4.61303,-6.41921,-25.6585,-0.283375,-19.5182,-18.9161,0,-19.246,-13.1064,-18.6439 0|0:15:5,2,8,0:5:198:2,8,0:80,295,0:-22.6124,-18.0611,-33.7665,0,-10.2666,-13.9071,-24.1175,-34.3685,-16.3154,-40.4235 0|0:7:6,0,0,1:6:219:0,0,1:0,0,39:-1.78935,-3.59553,-21.4652,-3.59553,-21.4652,-21.4652,0,-18.2557,-18.2557,-17.9547 0|0:3:3,0,0,0:3:116:0,0,0:0,0,0:0,-0.90309,-10.8177,-0.90309,-10.8177,-10.8177,-0.90309,-10.8177,-10.8177,-10.8177 dDocent_Contig_7105 112 . G A 258.544 . AB=0.267857;ABP=29.2231;AC=3;AF=0.375;AN=8;AO=15;CIGAR=1X;DP=75;DPB=75;DPRA=0.982456;EPP=35.5824;EPPR=124.758;GTI=0;LEN=1;MEANALT=1;MQM=58.6;MQMR=48.65;NS=4;NUMALT=1;ODDS=0;PAIRED=0.866667;PAIREDR=0.433333;PAO=0;PQA=0;PQR=0;PRO=0;QA=524;QR=1997;RO=60;RPL=0;RPP=35.5824;RPPR=133.299;RPR=15;RUN=1;SAF=0;SAP=35.5824;SAR=15;SRF=1;SRP=124.758;SRR=59;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:41:34,7:34:1125:7:245:-9.91722,0,-80.8276 0/1:11:4,7:4:139:7:244:-18.9887,0,-8.05278 0/0:19:19,0:19:639:0:0:0,-5.71957,-56.0126 0/1:4:3,1:3:94:1:35:-2.29451,0,-7.56655 dDocent_Contig_7106 44 . T C 1520.56 . AB=0.586207;ABP=8.62618;AC=4;AF=0.5;AN=8;AO=51;CIGAR=1X;DP=87;DPB=87;DPRA=0;EPP=113.755;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2039;QR=1452;RO=36;RPL=0;RPP=113.755;RPPR=81.1833;RPR=51;RUN=1;SAF=51;SAP=113.755;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:41:16,25:16:637:25:986:-76.698,0,-45.321 0/1:18:14,4:14:572:4:164:-9.73136,0,-46.4031 0/1:19:5,14:5:203:14:568:-45.7415,0,-12.9335 0/1:9:1,8:1:40:8:321:-26.5486,0,-1.28641 dDocent_Contig_7107 8 . T G 32.8132 . AB=0.116279;ABP=58.0041;AC=1;AF=0.125;AN=8;AO=11;CIGAR=1X;DP=152;DPB=152;DPRA=2.64706;EPP=26.8965;EPPR=309.188;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=421;QR=5440;RO=141;RPL=0;RPP=26.8965;RPPR=309.188;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=141;SRP=309.188;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:53:50,3:50:1929:3:109:0,-5.78702,-163.683 0/1:43:38,5:38:1459:5:195:-4.97991,0,-118.64 0/0:39:36,3:36:1389:3:117:0,-0.829789,-114.381 0/0:17:17,0:17:663:0:0:0,-5.11751,-60.0071 dDocent_Contig_7108 159 . A T 35.8229 . AB=0.222222;ABP=9.04217;AC=1;AF=0.125;AN=8;AO=2;CIGAR=3X2M1X;DP=39;DPB=39;DPRA=0.9;EPP=7.35324;EPPR=72.7387;GTI=0;LEN=1;MEANALT=2;MQM=54;MQMR=60;NS=4;NUMALT=1;ODDS=8.67362e-19;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=80;QR=1191;RO=36;RPL=2;RPP=7.35324;RPPR=72.7387;RPR=0;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=81.1833;SRR=36;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:9:6,2:6:206:2:80:-4.98012,0,-16.3596 0|0:11:11,0:11:372:0:0:0,-3.31133,-33.8073 0|0:11:11,0:11:343:0:0:0,-3.31133,-31.173 0|0:8:8,0:8:270:0:0:0,-2.40824,-24.63 dDocent_Contig_7109 42 . T C 327.902 . AB=0.220779;ABP=55.1538;AC=3;AF=0.375;AN=8;AO=18;CIGAR=1X;DP=110;DPB=110;DPRA=0;EPP=42.0968;EPPR=202.786;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=0.833333;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=678;QR=3528;RO=92;RPL=0;RPP=42.0968;RPPR=202.786;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=92;SRP=202.786;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:33:32,1:32:1225:1:27:0,-7.23421,-107.833 0/1:26:14,12:14:540:12:459:-33.8204,0,-41.1112 0/1:27:24,3:24:929:3:112:-2.31591,0,-75.7877 0/1:24:22,2:22:834:2:80:-0.366855,0,-68.1485 dDocent_Contig_7110 35 . C A 180.041 . AB=0.333333;ABP=8.07707;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=55;DPB=55;DPRA=1.85294;EPP=18.2106;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=285;QR=1925;RO=48;RPL=0;RPP=18.2106;RPPR=107.241;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:21:21,0:21:839:0:0:0,-6.32163,-75.8242 0/1:21:14,7:14:566:7:285:-19.7028,0,-44.9613 0/0:11:11,0:11:441:0:0:0,-3.31133,-40.0455 0/0:2:2,0:2:79:0:0:0,-0.60206,-7.49724 dDocent_Contig_7112 1 . N G 112.807 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=121;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:121:-11.2802,-0.90309,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_7113 10 . C T 923.915 . AB=0.286713;ABP=59.5141;AC=4;AF=0.5;AN=8;AO=41;CIGAR=1X;DP=143;DPB=143;DPRA=0;EPP=92.0407;EPPR=220.158;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=0.926829;PAIREDR=0.87;PAO=0;PQA=0;PQR=0;PRO=0;QA=1573;QR=4022;RO=100;RPL=0;RPP=92.0407;RPPR=220.158;RPR=41;RUN=1;SAF=41;SAP=92.0407;SAR=0;SRF=100;SRP=220.158;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:34:27,6:27:1087:6:221:-9.92922,0,-87.8022 0/1:47:24,23:24:959:23:878:-65.1822,0,-72.4609 0/1:45:34,10:34:1374:10:395:-22.2549,0,-110.26 0/1:17:15,2:15:602:2:79:-2.38012,0,-49.3989 dDocent_Contig_7115 10 . C T 994.815 . AB=0.161692;ABP=402.648;AC=4;AF=0.5;AN=8;AO=65;CIGAR=1X;DP=402;DPB=402;DPRA=0;EPP=144.156;EPPR=734.797;GTI=0;LEN=1;MEANALT=1;MQM=59.8769;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2500;QR=13519;RO=337;RPL=0;RPP=144.156;RPPR=734.797;RPR=65;RUN=1;SAF=65;SAP=144.156;SAR=0;SRF=337;SRP=734.797;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:163:138,25:138:5556:25:970:-38.5334,0,-450.779 0/1:152:125,27:125:4993:27:1031:-47.3102,0,-403.497 0/1:65:54,11:54:2171:11:425:-19.0331,0,-175.992 0/1:22:20,2:20:799:2:74:-0.402201,0,-65.6038 dDocent_Contig_7116 109 . C A 30.1303 . AB=0.142857;ABP=88.3181;AC=2;AF=0.25;AN=8;AO=11;CIGAR=1X;DP=123;DPB=123;DPRA=1.67391;EPP=26.8965;EPPR=244.044;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=318;QR=3738;RO=111;RPL=0;RPP=26.8965;RPPR=244.044;RPR=11;RUN=1;SAF=0;SAP=26.8965;SAR=11;SRF=0;SRP=244.044;SRR=111;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:72:61,10:61:2041:10:284:-4.33291,0,-162.466 0/0:37:37,0:37:1246:0:0:0,-11.1381,-112.437 0/0:9:9,0:9:311:0:0:0,-2.70927,-28.3252 0/1:5:4,1:4:140:1:34:-1.89376,0,-11.4398 dDocent_Contig_7118 18 . A T 141.354 . AB=0.333333;ABP=8.80089;AC=1;AF=0.125;AN=8;AO=11;CIGAR=1X;DP=54;DPB=54;DPRA=2.17647;EPP=26.8965;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1.5;MQM=37.2727;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.545455;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=436;QR=1670;RO=42;RPL=0;RPP=26.8965;RPPR=94.2121;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:13:10,3:10:393:3:121:0,-1.11441,-32.9265 0/0:13:13,0:13:520:0:0:0,-3.91339,-47.1449 0/1:24:15,8:15:598:8:315:-15.8342,0,-46.8225 0/0:4:4,0:4:159:0:0:0,-1.20412,-14.6908 dDocent_Contig_7119 29 . C T 882.718 . AB=0.137725;ABP=193.385;AC=1;AF=0.125;AN=8;AO=23;CIGAR=1X1M1X;DP=174;DPB=174;DPRA=0;EPP=52.9542;EPPR=254.901;GTI=0;LEN=1;MEANALT=2.66667;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=907;QR=4533;RO=116;RPL=0;RPP=52.9542;RPPR=254.901;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=116;SRP=254.901;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:53:44,8,1:44:1723:8,1:319,41:-13.0145,0,-139.242,-22.8745,-138.265,-164.235 0|0:41:25,3,12:25:958:3,12:122,486:-32.5486,-30.0108,-107.706,0,-68.5278,-74.981 0|0:73:41,12,19:41:1616:12,19:466,735:-48.0121,-22.0703,-151.412,0,-94.6708,-127.234 0|0:7:6,0,1:6:236:0,1:0,41:-1.98736,-3.79354,-23.1917,0,-19.8053,-19.5043 dDocent_Contig_7120 11 . C A 2129.6 . AB=0.204724;ABP=99.1877;AC=5;AF=0.625;AN=8;AO=26;CIGAR=4X3M2X3M1X2M;DP=127;DPB=127;DPRA=0;EPP=59.4686;EPPR=76.8404;GTI=0;LEN=1;MEANALT=2.5;MQM=59.1923;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=0.961538;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1044;QR=1333;RO=34;RPL=0;RPP=59.4686;RPPR=76.8404;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:49:10,31,0,8:10:394:31,0,8:1216,0,319:-96.984,0,-23.0827,-99.9943,-32.4146,-132.41,-73.9903,-6.41072,-106.406,-103.998 0|1:26:6,15,0,5:6:236:15,0,5:593,0,201:-46.9889,0,-14.8927,-48.795,-19.4081,-68.207,-32.229,-2.83982,-51.6412,-50.1361 0|1:36:17,11,3,4:17:670:11,3,4:426,120,161:-29.8871,0,-51.8326,-25.1153,-45.2568,-79.3463,-21.7286,-41.8712,-66.9775,-75.6602 1|1:16:1,6,0,9:1:33:6,0,9:237,0,363:-46.4981,-27.3273,-28.182,-46.7991,-29.9882,-49.463,-16.8713,0,-19.5303,-16.8211 dDocent_Contig_7121 24 . C T 435.991 . AB=0.152709;ABP=215.676;AC=3;AF=0.375;AN=8;AO=32;CIGAR=2X;DP=216;DPB=216;DPRA=0;EPP=72.4974;EPPR=402.561;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1241;QR=7268;RO=184;RPL=0;RPP=72.4974;RPPR=402.561;RPR=32;RUN=1;SAF=32;SAP=72.4974;SAR=0;SRF=184;SRP=402.561;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:83:67,16:67:2669:16:617:-30.881,0,-215.36 0|1:87:75,12:75:2931:12:466:-16.0996,0,-237.724 0|1:33:30,3:30:1199:3:119:-1.16102,0,-98.2552 0|0:13:12,1:12:469:1:39:0,-0.0168255,-38.6598 dDocent_Contig_7122 9 . G T 144.106 . AB=0.162162;ABP=39.6906;AC=4;AF=0.5;AN=8;AO=8;CIGAR=1X;DP=50;DPB=50;DPRA=1.18182;EPP=20.3821;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.97619;PAO=0;PQA=0;PQR=0;PRO=0;QA=309;QR=1595;RO=42;RPL=0;RPP=20.3821;RPPR=94.2121;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:78:-7.40347,-0.60206,0 0/1:12:10,2:10:389:2:76:-3.60245,0,-31.756 0/0:11:11,0:11:427:0:0:0,-3.31133,-38.785 0/1:25:21,4:21:779:4:155:-6.79969,0,-62.9032 dDocent_Contig_7123 148 . C T 162.644 . AB=0.545455;ABP=3.20771;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=34;DPB=34;DPRA=1.43478;EPP=16.0391;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=229;QR=1055;RO=28;RPL=0;RPP=16.0391;RPPR=63.8115;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=63.8115;SRR=28;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:5,6:5:202:6:229:-17.6624,0,-15.2505 0/0:10:10,0:10:377:0:0:0,-3.0103,-34.2732 0/0:6:6,0:6:213:0:0:0,-1.80618,-19.5102 0/0:7:7,0:7:263:0:0:0,-2.10721,-24.0257 dDocent_Contig_7124 35 . A C 419.262 . AB=0.174497;ABP=140.134;AC=4;AF=0.5;AN=8;AO=26;CIGAR=1X;DP=149;DPB=149;DPRA=0;EPP=59.4686;EPPR=270.101;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1030;QR=4843;RO=123;RPL=0;RPP=59.4686;RPPR=270.101;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=123;SRP=270.101;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:78:68,10:68:2677:10:393:-12.2408,0,-217.569 0/1:23:15,8:15:563:8:320:-22.2424,0,-44.0649 0/1:26:21,5:21:835:5:198:-10.3682,0,-67.6364 0/1:22:19,3:19:768:3:119:-4.47235,0,-62.8175 dDocent_Contig_7125 132 . A T 3491.08 . AB=0.689655;ABP=66.4323;AC=4;AF=0.5;AN=8;AO=140;CIGAR=1X;DP=203;DPB=203;DPRA=0;EPP=307.016;EPPR=139.813;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4627;QR=2158;RO=63;RPL=0;RPP=307.016;RPPR=139.813;RPR=140;RUN=1;SAF=0;SAP=307.016;SAR=140;SRF=0;SRP=139.813;SRR=63;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:8,20:8:272:20:671:-52.2753,0,-16.3826 0/1:29:7,22:7:237:22:722:-56.5556,0,-12.9313 0/1:60:17,43:17:583:43:1408:-108.944,0,-34.7328 0/1:86:31,55:31:1066:55:1826:-138.731,0,-70.3599 dDocent_Contig_7126 10 . A C 463.256 . AB=0.244186;ABP=51.8937;AC=3;AF=0.375;AN=8;AO=21;CIGAR=2X;DP=103;DPB=103;DPRA=1.68627;EPP=48.6112;EPPR=168.042;GTI=0;LEN=1;MEANALT=1.33333;MQM=54.0952;MQMR=60;NS=4;NUMALT=2;ODDS=6.93889e-18;PAIRED=0.666667;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=850;QR=2926;RO=76;RPL=0;RPP=48.6112;RPPR=168.042;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=76;SRP=168.042;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:32:16,10,6:16:634:10,6:404,244:-27.4358,0,-49.1648,-12.1205,-32.0458,-62.4993 0|1:34:29,5,0:29:1103:5,0:204,0:-8.3791,0,-89.3261,-17.109,-90.8313,-107.539 0|0:17:17,0,0:17:655:0,0:0,0:0,-5.11751,-59.2748,-5.11751,-59.2748,-59.2748 0|1:20:14,6,0:14:534:6,0:242,0:-15.9086,0,-42.376,-20.123,-44.1822,-63.9118 dDocent_Contig_7127 36 . T C 214.459 . AB=0.333333;ABP=12.42;AC=2;AF=0.25;AN=8;AO=13;CIGAR=1X;DP=66;DPB=66;DPRA=1.44444;EPP=31.2394;EPPR=115.927;GTI=0;LEN=1;MEANALT=1.5;MQM=31;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=505;QR=2090;RO=52;RPL=0;RPP=31.2394;RPPR=115.927;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:32:19,12:19:768:12:466:-22.8398,0,-59.7054 0/0:23:23,0:23:921:0:0:0,-6.92369,-83.1931 0/1:7:6,1:6:238:1:39:-0.566269,0,-19.6853 0/0:4:4,0:4:163:0:0:0,-1.20412,-15.0584 dDocent_Contig_7128 90 . G A 150.467 . AB=0.285714;ABP=14.1779;AC=1;AF=0.125;AN=8;AO=23;CIGAR=1X;DP=272;DPB=272;DPRA=2.35802;EPP=52.9542;EPPR=543.707;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=804;QR=8282;RO=249;RPL=23;RPP=52.9542;RPPR=543.707;RPR=0;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=249;SRP=543.707;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:163:148,15:148:4882:15:528:0,-1.21628,-391.713 0/0:44:44,0:44:1469:0:0:0,-13.2453,-132.499 0/0:37:37,0:37:1277:0:0:0,-11.1381,-115.233 0/1:28:20,8:20:654:8:276:-16.7456,0,-50.7397 dDocent_Contig_7129 28 . T C 1258.6 . AB=0.511628;ABP=3.1113;AC=2;AF=0.25;AN=8;AO=44;CIGAR=1X;DP=125;DPB=125;DPRA=2.20513;EPP=98.5551;EPPR=178.9;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1717;QR=3167;RO=81;RPL=0;RPP=98.5551;RPPR=178.9;RPR=44;RUN=1;SAF=44;SAP=98.5551;SAR=0;SRF=81;SRP=178.9;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:72:33,39:33:1285:39:1520:-115.367,0,-94.2558 0/0:26:26,0:26:1025:0:0:0,-7.82678,-92.5508 0/1:14:9,5:9:349:5:197:-13.8911,0,-27.5556 0/0:13:13,0:13:508:0:0:0,-3.91339,-46.0674 dDocent_Contig_7131 49 . C T 108.536 . AB=0.1875;ABP=30.1537;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=149;DPB=149;DPRA=0.820513;EPP=16.0391;EPPR=288.02;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.5;PAIREDR=0.846154;PAO=0;PQA=0;PQR=0;PRO=0;QA=239;QR=5554;RO=143;RPL=0;RPP=16.0391;RPPR=263.602;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=140;SRP=288.02;SRR=3;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:32:26,6:26:996:6:239:-12.2515,0,-80.2964 0/0:57:57,0:57:2199:0:0:0,-17.1587,-198.101 0/0:15:15,0:15:603:0:0:0,-4.51545,-54.6069 0/0:45:45,0:45:1756:0:0:0,-13.5463,-158.268 dDocent_Contig_7132 10 . A G 415.422 . AB=0.178295;ABP=118.974;AC=2;AF=0.25;AN=8;AO=23;CIGAR=1X;DP=231;DPB=231;DPRA=1.26471;EPP=52.9542;EPPR=454.677;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=923;QR=8149;RO=208;RPL=0;RPP=52.9542;RPPR=454.677;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=208;SRP=454.677;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:105:86,19:86:3340:19:764:-37.4729,0,-269.062 0/0:54:54,0:54:2131:0:0:0,-16.2556,-191.974 0/0:48:48,0:48:1885:0:0:0,-14.4494,-169.864 0/1:24:20,4:20:793:4:159:-7.46723,0,-64.4605 dDocent_Contig_7133 19 . T A 422.741 . AB=0.346939;ABP=12.9813;AC=3;AF=0.375;AN=8;AO=17;CIGAR=1X;DP=55;DPB=55;DPRA=2.72222;EPP=39.9253;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=681;QR=1507;RO=38;RPL=0;RPP=39.9253;RPPR=85.5263;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:8,4:8:325:4:161:-11.2629,0,-26.0071 0/1:13:8,5:8:318:5:201:-14.5575,0,-25.0715 0/1:24:16,8:16:625:8:319:-21.8516,0,-49.3556 0/0:6:6,0:6:239:0:0:0,-1.80618,-21.8843 dDocent_Contig_7134 10 . A G 165.287 . AB=0.333333;ABP=8.07707;AC=2;AF=0.25;AN=8;AO=8;CIGAR=1X;DP=40;DPB=40;DPRA=2.33333;EPP=20.3821;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.25;PAIREDR=0.6875;PAO=0;PQA=0;PQR=0;PRO=0;QA=324;QR=1277;RO=32;RPL=0;RPP=20.3821;RPPR=72.4974;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:6,4:6:241:4:161:-11.8646,0,-19.0562 0/0:5:5,0:5:202:0:0:0,-1.50515,-18.5615 0/0:14:13,1:13:514:1:41:0,-0.119853,-42.5143 0/1:11:8,3:8:320:3:122:-8.06116,0,-25.8563 dDocent_Contig_7135 26 . C T 1748.91 . AB=0.304147;ABP=75.3093;AC=4;AF=0.5;AN=8;AO=66;CIGAR=1M2I1M1X;DP=217;DPB=270.333;DPRA=0;EPP=146.327;EPPR=267.93;GTI=0;LEN=1;MEANALT=2.25;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2616;QR=4924;RO=122;RPL=0;RPP=146.327;RPPR=267.93;RPR=66;RUN=1;SAF=66;SAP=146.327;SAR=0;SRF=122;SRP=267.93;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:52:22,6,24:22:890:6,24:239,947:-71.2856,-58.2266,-129.806,0,-53.7064,-66.1613 0|1:72:51,9,12:51:2062:9,12:351,480:-24.1931,-10.7003,-177.998,0,-141.168,-166.403 0|1:46:22,11,10:22:885:11,10:439,399:-29.5404,0,-69.636,-3.29529,-40.0845,-73.2311 0|1:47:27,0,20:27:1087:0,20:0,790:-57.2698,-65.3976,-154.988,0,-89.9882,-83.9676 dDocent_Contig_7136 11 . T A 1721.5 . AB=0.450704;ABP=6.00754;AC=4;AF=0.5;AN=8;AO=64;CIGAR=1X6M;DP=142;DPB=142;DPRA=0;EPP=141.985;EPPR=120.27;GTI=0;LEN=1;MEANALT=3.25;MQM=52.4062;MQMR=60;NS=4;NUMALT=4;ODDS=2.77556e-17;PAIRED=0.15625;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2435;QR=2086;RO=54;RPL=0;RPP=141.985;RPPR=120.27;RPR=64;RUN=1;SAF=64;SAP=141.985;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:50:17,0,4,0,28:17:671:0,4,0,28:0,147,0,1119:-86.1885,-91.3061,-146.52,-79.8588,-135.071,-133.867,-91.3061,-146.52,-135.071,-146.52,0,-55.2555,-43.8099,-55.2555,-46.8266 0|1:44:15,2,0,7,16:15:587:2,0,7,16:80,0,266,625:-46.3208,-44.6204,-92.2883,-50.8362,-92.8903,-99.1058,-29.0226,-71.0782,-77.2936,-75.1864,0,-42.0639,-48.2795,-26.4665,-43.4631 0|1:36:15,3,2,0,16:15:559:3,2,0,16:119,80,0,532:-36.2766,-31.5191,-76.3906,-34.1949,-70.7002,-79.3668,-40.7921,-77.2937,-79.9688,-86.5619,0,-36.4776,-39.1508,-45.7436,-40.9271 0|1:12:7,0,1,0,4:7:269:0,1,0,4:0,40,0,159:-10.7618,-12.869,-34.9482,-9.76364,-31.8411,-31.54,-12.869,-34.9482,-31.8411,-34.9482,0,-22.0862,-18.9791,-22.0862,-20.8821 dDocent_Contig_7137 23 . T A 1036.49 . AB=0.457831;ABP=4.29225;AC=3;AF=0.375;AN=8;AO=40;CIGAR=1X;DP=122;DPB=122;DPRA=0;EPP=89.8692;EPPR=178.9;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.9;PAIREDR=0.987654;PAO=0;PQA=0;PQR=0;PRO=0;QA=1556;QR=3219;RO=81;RPL=0;RPP=89.8692;RPPR=178.9;RPR=40;RUN=1;SAF=40;SAP=89.8692;SAR=0;SRF=81;SRP=178.9;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:39:37,2:37:1455:2:77:0,-4.43103,-123.897 0/1:31:24,6:24:963:6:240:-12.5367,0,-77.532 0/1:34:13,21:13:523:21:826:-64.4216,0,-37.1796 0/1:18:7,11:7:278:11:413:-32.0885,0,-19.972 dDocent_Contig_7138 27 . T C 47.7264 . AB=0.148148;ABP=32.0437;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=115;DPB=115;DPRA=0.642857;EPP=13.8677;EPPR=241.872;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=199;QR=4096;RO=110;RPL=0;RPP=13.8677;RPPR=241.872;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=110;SRP=241.872;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:40:40,0:40:1462:0:0:0,-12.0412,-131.845 0/0:30:30,0:30:1135:0:0:0,-9.0309,-102.447 0/1:27:23,4:23:860:4:158:-6.47155,0,-69.5889 0/0:18:17,1:17:639:1:41:0,-1.32397,-53.7491 dDocent_Contig_7139 22 . A G 36.6593 . AB=0.114754;ABP=81.6461;AC=2;AF=0.25;AN=8;AO=8;CIGAR=1X;DP=127;DPB=127;DPRA=0.699187;EPP=20.3821;EPPR=261.416;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=313;QR=4580;RO=119;RPL=0;RPP=20.3821;RPPR=261.416;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=119;SRP=261.416;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:32,4:32:1204:4:156:-3.58021,0,-97.8014 0/0:41:41,0:41:1585:0:0:0,-12.3422,-142.906 0/1:25:22,3:22:854:3:118:-3.47714,0,-69.6499 0/0:25:24,1:24:937:1:39:0,-3.62919,-80.743 dDocent_Contig_7140 20 . A C 30.4133 . AB=0.2;ABP=10.8276;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X;DP=76;DPB=76;DPRA=0.454545;EPP=7.35324;EPPR=163.699;GTI=0;LEN=1;MEANALT=1;MQM=54;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=2969;RO=74;RPL=0;RPP=7.35324;RPPR=163.699;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=74;SRP=163.699;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:30:30,0:30:1220:0:0:0,-9.0309,-110.068 0/0:35:35,0:35:1384:0:0:0,-10.536,-124.813 0/1:10:8,2:8:326:2:82:-4.73935,0,-26.6996 0/0:1:1,0:1:39:0:0:0,-0.30103,-3.89656 dDocent_Contig_7141 15 . T C 171.695 . AB=0.108108;ABP=52.3673;AC=0;AF=0;AN=8;AO=12;CIGAR=4M1X;DP=231;DPB=233.6;DPRA=1.24194;EPP=29.068;EPPR=450.334;GTI=0;LEN=1;MEANALT=1.5;MQM=12;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=480;QR=8199;RO=206;RPL=0;RPP=29.068;RPPR=450.334;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=206;SRP=450.334;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:62:59,3,0:59:2356:3,0:118,0:0,-7.66114,-201.199,-17.7608,-202.102,-211.808 0|0:117:109,0,8:109:4328:0,8:0,324:0,-32.8123,-389.357,-26.4648,-383.149,-380.741 0|0:37:25,8,4:25:994:8,4:304,156:-17.5745,0,-79.6696,-22.0752,-79.0044,-102.723 0|0:15:13,2,0:13:521:2,0:79,0:-2.98179,0,-42.7229,-6.89518,-43.325,-49.8248 dDocent_Contig_7142 85 . G A 787.251 . AB=0.388889;ABP=12.6613;AC=3;AF=0.375;AN=8;AO=35;CIGAR=1X;DP=164;DPB=164;DPRA=0.405405;EPP=79.0118;EPPR=283.13;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1217;QR=4435;RO=129;RPL=35;RPP=79.0118;RPPR=283.13;RPR=0;RUN=1;SAF=35;SAP=79.0118;SAR=0;SRF=129;SRP=283.13;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:74:74,0:74:2523:0:0:0,-22.2762,-227.329 0/1:51:37,14:37:1285:14:490:-29.0801,0,-100.601 0/1:22:16,6:16:559:6:210:-12.6198,0,-44.0171 0/1:17:2,15:2:68:15:517:-41.7403,0,-1.34037 dDocent_Contig_7143 54 . T G 47.7714 . AB=0.181818;ABP=22.3561;AC=2;AF=0.25;AN=8;AO=4;CIGAR=1X;DP=48;DPB=48;DPRA=0.846154;EPP=11.6962;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=147;QR=1694;RO=44;RPL=4;RPP=11.6962;RPPR=98.5551;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:10,3:10:366:3:108:-6.15867,0,-29.3553 0/0:9:9,0:9:352:0:0:0,-2.70927,-32.0334 0/0:17:17,0:17:653:0:0:0,-5.11751,-59.0885 0/1:9:8,1:8:323:1:39:-1.18729,0,-26.7288 dDocent_Contig_7144 33 . C T 6453.36 . AB=0.246241;ABP=300.567;AC=5;AF=0.625;AN=8;AO=131;CIGAR=13M1X4M;DP=532;DPB=542.333;DPRA=0;EPP=287.473;EPPR=378.675;GTI=0;LEN=1;MEANALT=5.25;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=0.977099;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5214;QR=6767;RO=173;RPL=0;RPP=287.473;RPPR=378.675;RPR=131;RUN=1;SAF=131;SAP=287.473;SAR=0;SRF=173;SRP=378.675;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:206:103,4,59,38:103:4005:4,59,38:160,2204,1515:-149.412,-167.238,-495.139,0,-315.918,-311.337,-55.6546,-371.586,-204.341,-373.327 1|1:181:25,11,94,48:25:986:11,94,48:441,3610,1913:-365.176,-336.367,-414.181,-76.4074,-121.196,-129.234,-215.168,-259.959,0,-281.845 0|1:79:30,11,19,16:30:1186:11,19,16:437,714,652:-49.4418,-22.4949,-116.789,0,-61.6244,-91.8805,-4.67496,-66.3057,-43.8071,-97.4669 0|1:66:15,11,10,29:15:590:11,10,29:438,388,1134:-88.7045,-57.1499,-102.373,-61.3434,-73.8083,-106.867,0,-12.4653,-16.6604,-39.8076 dDocent_Contig_7145 12 . G T 51.2326 . AB=0.222222;ABP=15.074;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=137;DPB=137;DPRA=0.453782;EPP=11.6962;EPPR=291.816;GTI=0;LEN=1;MEANALT=1;MQM=40;MQMR=58.3609;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=139;QR=5271;RO=133;RPL=0;RPP=11.6962;RPPR=291.816;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=133;SRP=291.816;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:48:48,0:48:1916:0:0:0,-14.4494,-172.645 0/0:49:49,0:49:1923:0:0:0,-14.7505,-171.475 0/0:22:22,0:22:865:0:0:0,-6.62266,-76.9901 0/1:18:14,4:14:567:4:139:-6.82222,0,-45.9528 dDocent_Contig_7146 50 . T A 53.9985 . AB=0.166667;ABP=26.1727;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=98;DPB=98;DPRA=0.972973;EPP=11.6962;EPPR=198.535;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=155;QR=3721;RO=94;RPL=4;RPP=11.6962;RPPR=198.535;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=94;SRP=207.129;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:43:43,0:43:1699:0:0:0,-12.9443,-153.135 0/1:24:20,4:20:787:4:155:-7.09875,0,-63.9204 0/0:27:27,0:27:1078:0:0:0,-8.12781,-97.3072 0/0:4:4,0:4:157:0:0:0,-1.20412,-14.5077 dDocent_Contig_7147 107 . N G 988.456 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=32;CIGAR=1X;DP=32;DPB=32;DPRA=0;EPP=72.4974;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1077;QR=0;RO=0;RPL=0;RPP=72.4974;RPPR=0;RPR=32;RUN=1;SAF=0;SAP=72.4974;SAR=32;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:20:0,20:0:0:20:679:-61.4279,-6.0206,0 1/1:6:0,6:0:0:6:205:-18.7853,-1.80618,0 1/1:5:0,5:0:0:5:158:-14.5312,-1.50515,0 1/1:1:0,1:0:0:1:35:-3.49863,-0.30103,0 dDocent_Contig_7149 29 . T A 2209.87 . AB=0.546099;ABP=5.61299;AC=4;AF=0.5;AN=8;AO=77;CIGAR=1X3M1X2M1X1M1X;DP=141;DPB=144;DPRA=0;EPP=170.214;EPPR=128.956;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2989;QR=2264;RO=58;RPL=0;RPP=170.214;RPPR=128.956;RPR=77;RUN=1;SAF=77;SAP=170.214;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:38:12,25:12:468:25:964:-75.5419,0,-30.9413 0|1:66:28,35:28:1087:35:1368:-104.174,0,-78.9041 0|1:28:14,13:14:550:13:502:-37.1584,0,-41.475 0|1:9:4,4:4:159:4:155:-11.5115,0,-11.8771 dDocent_Contig_7151 76 . T A 730.186 . AB=0.329787;ABP=26.6655;AC=3;AF=0.375;AN=8;AO=31;CIGAR=1X;DP=114;DPB=114;DPRA=1.56667;EPP=70.3259;EPPR=183.243;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1174;QR=3195;RO=83;RPL=31;RPP=70.3259;RPPR=183.243;RPR=0;RUN=1;SAF=31;SAP=70.3259;SAR=0;SRF=83;SRP=183.243;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:44:34,10:34:1310:10:390:-22.2134,0,-104.942 0/1:14:5,9:5:192:9:336:-26.3782,0,-13.4356 0/1:36:24,12:24:924:12:448:-29.8249,0,-72.64 0/0:20:20,0:20:769:0:0:0,-6.0206,-69.5383 dDocent_Contig_7153 9 . G C 116.366 . AB=0.212121;ABP=26.7649;AC=2;AF=0.25;AN=8;AO=7;CIGAR=1X;DP=50;DPB=50;DPRA=1.94118;EPP=18.2106;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=269;QR=1661;RO=43;RPL=0;RPP=18.2106;RPPR=96.3836;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:14,5:14:543:5:191:-11.8385,0,-43.4964 0/1:14:12,2:12:462:2:78:-3.18905,0,-37.7167 0/0:10:10,0:10:390:0:0:0,-3.0103,-35.4587 0/0:7:7,0:7:266:0:0:0,-2.10721,-24.3017 dDocent_Contig_7154 64 . A C 423.434 . AB=0.321429;ABP=18.5208;AC=4;AF=0.5;AN=8;AO=18;CIGAR=2X;DP=56;DPB=56;DPRA=0;EPP=42.0968;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.5;PAIREDR=0.789474;PAO=0;PQA=0;PQR=0;PRO=0;QA=723;QR=1491;RO=38;RPL=18;RPP=42.0968;RPPR=85.5263;RPR=0;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:17:12,5:12:475:5:198:-13.08,0,-37.9835 0|1:20:13,7:13:497:7:284:-19.9134,0,-39.0468 0|1:9:6,3:6:239:3:122:-8.66322,0,-19.175 0|1:10:7,3:7:280:3:119:-8.08471,0,-22.5618 dDocent_Contig_7156 48 . G T 376.924 . AB=0.1875;ABP=98.0122;AC=4;AF=0.5;AN=8;AO=21;CIGAR=1X;DP=112;DPB=112;DPRA=0;EPP=48.6112;EPPR=200.614;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=848;QR=3607;RO=91;RPL=0;RPP=48.6112;RPPR=200.614;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=91;SRP=200.614;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:60:47,13:47:1864:13:528:-29.8047,0,-149.902 0/1:28:25,3:25:992:3:116:-2.38744,0,-81.1504 0/1:14:10,4:10:396:4:163:-10.844,0,-31.7831 0/1:10:9,1:9:355:1:41:-1.08427,0,-29.2994 dDocent_Contig_7157 50 . G A 566.571 . AB=0.392857;ABP=8.59409;AC=4;AF=0.5;AN=8;AO=22;CIGAR=1X;DP=56;DPB=56;DPRA=0;EPP=50.7827;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.318182;PAIREDR=0.764706;PAO=0;PQA=0;PQR=0;PRO=0;QA=882;QR=1323;RO=34;RPL=22;RPP=50.7827;RPPR=76.8404;RPR=0;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:13,10:13:510:10:402:-29.6162,0,-39.3203 0/1:19:11,8:11:425:8:319:-23.3573,0,-32.8744 0/1:10:7,3:7:269:3:120:-8.17739,0,-21.5579 0/1:4:3,1:3:119:1:41:-2.89045,0,-9.89089 dDocent_Contig_7160 41 . C A 528.89 . AB=0.338983;ABP=16.2968;AC=1;AF=0.125;AN=8;AO=20;CIGAR=1X;DP=140;DPB=140;DPRA=2.18519;EPP=46.4397;EPPR=263.587;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=797;QR=4846;RO=120;RPL=0;RPP=46.4397;RPPR=263.587;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=120;SRP=263.587;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:59:39,20:39:1578:20:797:-54.287,0,-124.487 0/0:37:37,0:37:1489:0:0:0,-11.1381,-134.249 0/0:34:34,0:34:1378:0:0:0,-10.235,-124.271 0/0:10:10,0:10:401:0:0:0,-3.0103,-36.4459 dDocent_Contig_7161 9 . G A 711.32 . 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T A 187.259 . AB=0.368421;ABP=5.8675;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=60;DPB=60;DPRA=1.39024;EPP=18.2106;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=283;QR=2099;RO=53;RPL=0;RPP=18.2106;RPPR=118.098;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:12,7:12:486:7:283:-20.1238,0,-38.3717 0/0:13:13,0:13:503:0:0:0,-3.91339,-45.6096 0/0:16:16,0:16:639:0:0:0,-4.81648,-57.8442 0/0:12:12,0:12:471:0:0:0,-3.61236,-42.7376 dDocent_Contig_7168 53 . G T 50.6977 . AB=0.147059;ABP=39.7976;AC=2;AF=0.25;AN=8;AO=5;CIGAR=1X;DP=116;DPB=116;DPRA=0.414634;EPP=13.8677;EPPR=244.044;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.990991;PAO=0;PQA=0;PQR=0;PRO=0;QA=199;QR=4455;RO=111;RPL=5;RPP=13.8677;RPPR=244.044;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=111;SRP=244.044;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:41:41,0:41:1644:0:0:0,-12.3422,-148.182 0/0:41:41,0:41:1640:0:0:0,-12.3422,-147.831 0/1:27:24,3:24:968:3:118:-2.87491,0,-79.2882 0/1:7:5,2:5:203:2:81:-5.57852,0,-16.5458 dDocent_Contig_7169 14 . T G 1253.12 . AB=0.297619;ABP=62.7775;AC=4;AF=0.5;AN=8;AO=50;CIGAR=1X;DP=168;DPB=168;DPRA=0;EPP=111.584;EPPR=259.244;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.82;PAIREDR=0.991525;PAO=0;PQA=0;PQR=0;PRO=0;QA=2021;QR=4694;RO=118;RPL=0;RPP=111.584;RPPR=259.244;RPR=50;RUN=1;SAF=50;SAP=111.584;SAR=0;SRF=118;SRP=259.244;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:89:73,16:73:2888:16:645:-31.5915,0,-233.229 0/1:38:24,14:24:970:14:565:-39.7506,0,-76.1588 0/1:27:18,9:18:713:9:367:-25.2674,0,-56.3634 0/1:14:3,11:3:123:11:444:-36.1003,0,-7.25037 dDocent_Contig_7170 30 . T C 1002.54 . AB=0.493151;ABP=3.04005;AC=4;AF=0.5;AN=8;AO=36;CIGAR=1X;DP=73;DPB=73;DPRA=0;EPP=81.1833;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1424;QR=1346;RO=37;RPL=0;RPP=81.1833;RPPR=83.3548;RPR=36;RUN=1;SAF=36;SAP=81.1833;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:33:14,19:14:530:19:758:-58.6087,0,-38.1068 0/1:18:14,4:14:485:4:163:-9.63989,0,-38.5534 0/1:18:8,10:8:294:10:388:-29.8493,0,-21.3899 0/1:4:1,3:1:37:3:115:-9.52091,0,-2.49371 dDocent_Contig_7171 15 . G A 36.9985 . AB=0.115385;ABP=69.8248;AC=2;AF=0.25;AN=8;AO=8;CIGAR=1X;DP=164;DPB=164;DPRA=0.738562;EPP=7.35324;EPPR=281.533;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.916129;PAO=0;PQA=0;PQR=0;PRO=0;QA=310;QR=6167;RO=155;RPL=0;RPP=20.3821;RPPR=339.589;RPR=8;RUN=1;SAF=6;SAP=7.35324;SAR=2;SRF=148;SRP=281.533;SRR=7;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:23,3:23:904:3:123:-3.63801,0,-73.8314 0/1:26:23,3:23:933:3:121:-3.45342,0,-76.4451 0/0:51:51,0:51:2040:0:0:0,-15.3525,-183.784 0/0:61:58,2:58:2290:2:66:0,-11.9713,-200.065 dDocent_Contig_7172 134 . C G 65.2477 . AB=0.375;ABP=4.09604;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X;DP=159;DPB=159;DPRA=0;EPP=22.5536;EPPR=328.731;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=347;QR=5525;RO=150;RPL=0;RPP=22.5536;RPPR=328.731;RPR=9;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=328.731;SRR=150;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:65:64,1:64:2336:1:39:0,-15.6704,-206.57 0/0:56:52,4:52:1922:4:155:0,-2.53224,-158.898 0/0:30:29,1:29:1081:1:39:0,-5.13434,-93.6977 0/1:8:5,3:5:186:3:114:-8.22374,0,-14.6916 dDocent_Contig_7173 1 . N G 73.1023 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=77;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:77:-7.30914,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_7174 20 . A G 112.472 . AB=0.151515;ABP=72.629;AC=2;AF=0.25;AN=8;AO=10;CIGAR=1X1M1X;DP=125;DPB=125;DPRA=1.11864;EPP=24.725;EPPR=252.73;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.921739;PAO=0;PQA=0;PQR=0;PRO=0;QA=374;QR=4578;RO=115;RPL=0;RPP=24.725;RPPR=252.73;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=115;SRP=252.73;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:36:29,7:29:1137:7:256:-12.5537,0,-91.7793 0|0:35:35,0:35:1401:0:0:0,-10.536,-126.348 0|1:30:27,3:27:1073:3:118:-1.97182,0,-87.8295 0|0:24:24,0:24:967:0:0:0,-7.22472,-87.3309 dDocent_Contig_7175 191 . A T 151.171 . AB=0.259259;ABP=16.6021;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=33;DPB=33;DPRA=2.25;EPP=18.2106;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=271;QR=1027;RO=26;RPL=7;RPP=18.2106;RPPR=59.4686;RPR=0;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=59.4686;SRR=26;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 0/1:15:9,6:9:352:6:231:-16.6364,0,-27.5227 0/1:12:11,1:11:433:1:40:-0.383319,0,-35.7099 0/0:6:6,0:6:242:0:0:0,-1.80618,-22.1569 dDocent_Contig_7176 28 . G A 196.288 . AB=0.466667;ABP=3.15506;AC=1;AF=0.125;AN=8;AO=10;CIGAR=1X;DP=99;DPB=99;DPRA=1.2;EPP=24.725;EPPR=196.271;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.94382;PAO=0;PQA=0;PQR=0;PRO=0;QA=402;QR=3577;RO=89;RPL=0;RPP=24.725;RPPR=196.271;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=89;SRP=196.271;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:39:36,3:36:1441:3:119:0,-0.645155,-118.843 0/0:30:30,0:30:1207:0:0:0,-9.0309,-108.897 0/1:15:8,7:8:324:7:283:-21.3276,0,-25.0134 0/0:15:15,0:15:605:0:0:0,-4.51545,-54.7876 dDocent_Contig_7177 145 . G A 261.927 . AB=0.315789;ABP=14.2105;AC=3;AF=0.375;AN=8;AO=12;CIGAR=1X;DP=53;DPB=53;DPRA=0.844444;EPP=29.068;EPPR=53.9075;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.756098;PAO=0;PQA=0;PQR=0;PRO=0;QA=466;QR=1610;RO=41;RPL=0;RPP=29.068;RPPR=92.0407;RPR=12;RUN=1;SAF=0;SAP=29.068;SAR=12;SRF=5;SRP=53.9075;SRR=36;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:6,7:6:222:7:285:-22.111,0,-16.4187 0/1:11:9,2:9:359:2:75:-3.80747,0,-29.3619 0/0:15:15,0:15:594:0:0:0,-4.51545,-53.7972 0/1:14:11,3:11:435:3:106:-5.67048,0,-35.2855 dDocent_Contig_7178 117 . G A 334.878 . 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AB=0.284091;ABP=38.6422;AC=4;AF=0.5;AN=8;AO=25;CIGAR=1X;DP=88;DPB=88;DPRA=0;EPP=57.2971;EPPR=139.813;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.96;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1009;QR=2519;RO=63;RPL=0;RPP=57.2971;RPPR=139.813;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=63;SRP=139.813;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:35:32,3:32:1272:3:114:-0.0940394,0,-104.211 0/1:31:23,8:23:919:8:324:-20.1969,0,-73.6753 0/1:14:6,8:6:246:8:328:-25.6759,0,-18.3057 0/1:8:2,6:2:82:6:243:-19.8394,0,-5.37144 dDocent_Contig_7180 23 . G T 79.7025 . 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AB=0.170213;ABP=47.41;AC=0;AF=0;AN=8;AO=8;CIGAR=1X2M1X5M1X;DP=107;DPB=107;DPRA=1.51613;EPP=20.3821;EPPR=148.499;GTI=0;LEN=1;MEANALT=5;MQM=60;MQMR=59.4776;NS=4;NUMALT=4;ODDS=0;PAIRED=0;PAIREDR=0.985075;PAO=0;PQA=0;PQR=0;PRO=0;QA=282;QR=2647;RO=67;RPL=0;RPP=20.3821;RPPR=148.499;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=67;SRP=148.499;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:31:28,2,0,0,1:28:1105:2,0,0,1:76,0,0,33:0,-2.16274,-91.2675,-8.42884,-91.8696,-98.102,-8.42884,-91.8696,-98.102,-98.102,-5.77725,-89.2034,-95.4357,-95.4357,-95.1347 0|0:47:20,2,8,12,4:20:788:2,8,12,4:79,282,476,162:-33.1713,-32.6898,-96.9225,-16.2497,-74.5777,-78.6705,0,-58.3414,-41.898,-61.2307,-25.8467,-84.1817,-67.7364,-51.4992,-89.4791 0|0:22:13,0,0,3,5:13:516:0,0,3,5:0,0,122,200:-12.5056,-16.419,-58.8945,-16.419,-58.8945,-58.8945,-6.35322,-48.83,-48.83,-47.9269,0,-42.4721,-42.4721,-32.4072,-40.9669 0|0:7:6,0,0,0,1:6:238:0,0,0,1:0,0,0,39:-1.78935,-3.59553,-23.1933,-3.59553,-23.1933,-23.1933,-3.59553,-23.1933,-23.1933,-23.1933,0,-19.9883,-19.9883,-19.9883,-19.6873 dDocent_Contig_7195 186 . C A 71.2937 . AB=0.190476;ABP=20.4855;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=50;DPB=50;DPRA=2.17241;EPP=11.6962;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=164;QR=1843;RO=46;RPL=4;RPP=11.6962;RPPR=102.898;RPR=0;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=102.898;SRR=46;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:9:9,0:9:362:0:0:0,-2.70927,-32.9431 0/0:16:16,0:16:637:0:0:0,-4.81648,-57.664 0/1:21:17,4:17:680:4:164:-8.82827,0,-55.2074 0/0:4:4,0:4:164:0:0:0,-1.20412,-15.1499 dDocent_Contig_7196 61 . T A 1517.86 . AB=0.738462;ABP=35.1147;AC=2;AF=0.25;AN=8;AO=48;CIGAR=1X;DP=101;DPB=101;DPRA=1.80556;EPP=107.241;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1935;QR=2105;RO=53;RPL=48;RPP=107.241;RPPR=118.098;RPR=0;RUN=1;SAF=48;SAP=107.241;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:31:31,0:31:1226:0:0:0,-9.33193,-110.617 0/1:51:9,42:9:362:42:1693:-137.241,0,-17.5916 0/1:14:8,6:8:316:6:242:-17.9431,0,-24.5903 0/0:5:5,0:5:201:0:0:0,-1.50515,-18.4709 dDocent_Contig_7197 14 . T C 38.7994 . AB=0.285714;ABP=5.80219;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=56;DPB=56;DPRA=0.647059;EPP=9.52472;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.90566;PAO=0;PQA=0;PQR=0;PRO=0;QA=121;QR=1972;RO=53;RPL=0;RPP=9.52472;RPPR=118.098;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:15:14,1:14:526:1:40:0,-0.519771,-43.6836 0/0:16:16,0:16:607:0:0:0,-4.81648,-54.9654 0/0:18:18,0:18:661:0:0:0,-5.41854,-59.8174 0/1:7:5,2:5:178:2:81:-5.57852,0,-14.2589 dDocent_Contig_7199 22 . C A 4681.04 . AB=0.11828;ABP=120.713;AC=0;AF=0;AN=8;AO=14;CIGAR=1X3M1X;DP=197;DPB=197;DPRA=0;EPP=33.4109;EPPR=50.7827;GTI=0;LEN=1;MEANALT=3.33333;MQM=60;MQMR=60;NS=4;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=540;QR=857;RO=22;RPL=0;RPP=33.4109;RPPR=50.7827;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:51:5,0,5,0,41:5:203:0,5,0,41:0,186,0,1622:-131.966,-133.471,-150.215,-118.249,-134.993,-133.487,-133.471,-150.215,-134.993,-150.215,0,-16.7593,-1.55185,-16.7593,-4.41704 0|0:53:0,3,1,3,46:0:0:3,1,3,46:123,38,115,1850:-166.305,-156.152,-155.249,-163.189,-153.036,-162.888,-156.868,-146.715,-153.752,-155.965,-13.8474,-3.68346,-10.7332,-4.41715,0 0|0:63:8,0,8,7,40:8:321:0,8,7,40:0,303,274,1587:-128.227,-130.635,-157.085,-105.795,-132.245,-129.836,-108.107,-134.557,-109.717,-132.45,0,-26.4546,-1.61817,-3.92551,-14.4134 0|0:30:9,0,2,4,15:9:333:0,2,4,15:0,76,151,603:-46.9983,-49.7076,-76.9321,-43.4761,-70.6996,-70.0976,-37.3373,-64.5593,-58.327,-63.3551,0,-27.2271,-20.993,-14.8511,-22.7116 dDocent_Contig_7200 11 . G A 214.148 . AB=0.109756;ABP=111.478;AC=2;AF=0.25;AN=8;AO=9;CIGAR=1M1I2X;DP=82;DPB=85;DPRA=0;EPP=22.5536;EPPR=146.327;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=364;QR=2585;RO=66;RPL=0;RPP=22.5536;RPPR=146.327;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=66;SRP=146.327;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:32:26,6,0:26:1004:6,0:246,0:-12.8872,0,-81.0281,-20.7139,-82.8343,-103.143 0|1:8:7,1,0:7:278:1,0:41,0:-1.68633,0,-22.9827,-3.79354,-23.2837,-26.6694 0|0:20:17,1,2:17:675:1,2:36,82:-1.68374,-3.88037,-59.1378,0,-52.6693,-55.0026 0|0:22:16,1,5:16:628:1,5:41,202:-11.8314,-13.2628,-64.6,0,-48.2455,-50.1254 dDocent_Contig_7202 9 . C A 94.0609 . AB=0.176471;ABP=33.9218;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=129;DPB=129;DPRA=1.07368;EPP=16.0391;EPPR=270.101;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.6911;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.528455;PAO=0;PQA=0;PQR=0;PRO=0;QA=233;QR=4742;RO=123;RPL=0;RPP=16.0391;RPPR=270.101;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=123;SRP=270.101;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:41:41,0:41:1584:0:0:0,-12.3422,-142.826 0/1:34:28,6:28:1059:6:233:-11.1051,0,-85.3809 0/0:41:41,0:41:1594:0:0:0,-12.3422,-143.347 0/0:13:13,0:13:505:0:0:0,-3.91339,-45.7991 dDocent_Contig_7203 9 . C T 273.435 . AB=0.141243;ABP=200.884;AC=3;AF=0.375;AN=8;AO=27;CIGAR=1X;DP=203;DPB=203;DPRA=0;EPP=61.6401;EPPR=385.189;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1010;QR=6768;RO=176;RPL=0;RPP=61.6401;RPPR=385.189;RPR=27;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=176;SRP=385.189;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:89:79,10:79:3055:10:369:-6.7598,0,-248.314 0/1:34:26,8:26:997:8:311:-18.1193,0,-79.8047 0/1:54:47,7:47:1783:7:264:-7.86228,0,-144.463 0/0:26:24,2:24:933:2:66:0,-1.55963,-78.0188 dDocent_Contig_7204 210 . C G 70.2696 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=2X3M5I1M1X1M2X3M2X;DP=2;DPB=2.66667;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=74;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. 1|1:2:0,2:0:0:2:74:-7.02588,-0.60206,0 .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. dDocent_Contig_7205 13 . T C 7713.38 . AB=0.858696;ABP=311.454;AC=4;AF=0.5;AN=8;AO=237;CIGAR=1X;DP=276;DPB=276;DPRA=0;EPP=517.649;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.434599;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=9569;QR=1567;RO=39;RPL=0;RPP=517.649;RPPR=87.6977;RPR=237;RUN=1;SAF=237;SAP=517.649;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:139:19,120:19:762:120:4851:-394.617,0,-27.056 0/1:77:9,68:9:362:68:2739:-223.435,0,-9.76417 0/1:31:8,23:8:324:23:934:-75.0294,0,-20.1973 0/1:29:3,26:3:119:26:1045:-85.6103,0,-2.36514 dDocent_Contig_7206 9 . C T 68.1957 . AB=0.235294;ABP=13.3567;AC=2;AF=0.25;AN=8;AO=4;CIGAR=1X;DP=62;DPB=62;DPRA=0.377778;EPP=11.6962;EPPR=128.956;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.75;PAIREDR=0.844828;PAO=0;PQA=0;PQR=0;PRO=0;QA=156;QR=2206;RO=58;RPL=0;RPP=11.6962;RPPR=128.956;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:15:15,0:15:548:0:0:0,-4.51545,-49.6482 0/0:30:30,0:30:1154:0:0:0,-9.0309,-104.158 0/1:9:8,1:8:311:1:39:-1.18729,0,-25.645 0/1:8:5,3:5:193:3:117:-8.50214,0,-15.3331 dDocent_Contig_7207 10 . T G 690.392 . AB=0.215686;ABP=110.434;AC=3;AF=0.375;AN=8;AO=36;CIGAR=1X;DP=225;DPB=225;DPRA=0;EPP=81.1833;EPPR=413.419;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1438;QR=7558;RO=189;RPL=0;RPP=81.1833;RPPR=413.419;RPR=36;RUN=1;SAF=36;SAP=81.1833;SAR=0;SRF=189;SRP=413.419;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:92:76,16:76:3018:16:651:-31.2278,0,-244.008 0/0:72:69,3:69:2771:3:111:0,-11.3224,-239.135 0/1:41:35,6:35:1407:6:243:-9.90574,0,-114.539 0/1:20:9,11:9:362:11:433:-33.3036,0,-26.9235 dDocent_Contig_7208 1 . N G 175.584 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=5;CIGAR=1X;DP=5;DPB=5;DPRA=0;EPP=13.8677;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=8.07091;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=191;QR=0;RO=0;RPL=0;RPP=13.8677;RPPR=0;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:5:0,5:0:0:5:191:-17.5583,-1.50515,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_7209 1 . N G 76.8682 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:81:-7.68573,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_7210 17 . T A 820.707 . AB=0.295082;ABP=47.5077;AC=3;AF=0.375;AN=8;AO=36;CIGAR=1X2M1X1M1D1M;DP=144;DPB=138.857;DPRA=0;EPP=81.1833;EPPR=222.329;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.990099;PAO=0;PQA=0;PQR=0;PRO=0;QA=1356;QR=3930;RO=101;RPL=0;RPP=81.1833;RPPR=222.329;RPR=36;RUN=1;SAF=36;SAP=81.1833;SAR=0;SRF=101;SRP=222.329;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:63:51,12,0:51:1965:12,0:454,0:-22.2446,0,-158.106,-37.5971,-161.718,-198.936 0|1:50:26,19,5:26:1017:19,5:718,205:-51.0037,0,-77.8778,-41.9034,-66.674,-124.019 0|0:22:20,0,2:20:791:0,2:0,81:-1.06307,-7.08367,-72.1727,0,-65.4927,-64.8906 0|1:9:4,5,0:4:157:5,0:184,0:-14.208,0,-11.7995,-15.4122,-13.3047,-28.3355 dDocent_Contig_7211 12 . A G 103.579 . AB=0.145833;ABP=55.3066;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=123;DPB=123;DPRA=1.92;EPP=18.2106;EPPR=254.901;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=287;QR=4673;RO=116;RPL=0;RPP=18.2106;RPPR=254.901;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=116;SRP=254.901;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:48:41,7:41:1654:7:287:-11.7558,0,-134.631 0/0:54:54,0:54:2188:0:0:0,-16.2556,-197.083 0/0:5:5,0:5:196:0:0:0,-1.50515,-18.0122 0/0:16:16,0:16:635:0:0:0,-4.81648,-57.481 dDocent_Contig_7212 84 . C A 96.1508 . AB=0.175;ABP=39.7082;AC=2;AF=0.25;AN=8;AO=7;CIGAR=1X;DP=104;DPB=104;DPRA=0.625;EPP=18.2106;EPPR=213.643;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=270;QR=3687;RO=97;RPL=7;RPP=18.2106;RPPR=213.643;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=97;SRP=213.643;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:12,4:12:466:4:153:-9.32513,0,-37.4757 0/0:29:29,0:29:1119:0:0:0,-8.72987,-101.012 0/0:35:35,0:35:1316:0:0:0,-10.536,-118.728 0/1:24:21,3:21:786:3:117:-3.68566,0,-63.8366 dDocent_Contig_7213 23 . A G 70 . AB=0.375;ABP=6.26751;AC=2;AF=0.25;AN=8;AO=17;CIGAR=1X;DP=154;DPB=154;DPRA=0;EPP=39.9253;EPPR=275.015;GTI=0;LEN=1;MEANALT=1;MQM=21.2941;MQMR=58.2409;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.956204;PAO=0;PQA=0;PQR=0;PRO=0;QA=675;QR=5438;RO=137;RPL=0;RPP=39.9253;RPPR=300.502;RPR=17;RUN=1;SAF=0;SAP=39.9253;SAR=17;SRF=134;SRP=275.015;SRR=3;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:76:71,5:71:2829:5:187:0,-13.8224,-238.185 0/0:54:51,3:51:2008:3:123:0,-9.56575,-174.226 0/1:18:11,7:11:442:7:283:-7.98999,0,-30.99 0/1:6:4,2:4:159:2:82:-2.36329,0,-12.8846 dDocent_Contig_7214 8 . T C 862.264 . AB=0.310345;ABP=12.0706;AC=4;AF=0.5;AN=8;AO=28;CIGAR=1X;DP=56;DPB=56;DPRA=2;EPP=63.8115;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1081;QR=1084;RO=28;RPL=0;RPP=63.8115;RPPR=63.8115;RPR=28;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:13,4:13:504:4:150:-8.74716,0,-40.5916 1/1:19:0,19:0:0:19:740:-66.931,-5.71957,0 0/1:12:7,5:7:271:5:191:-13.9462,0,-21.144 0/0:8:8,0:8:309:0:0:0,-2.40824,-28.173 dDocent_Contig_7215 35 . T C 2683.73 . AB=0.598684;ABP=15.8677;AC=4;AF=0.5;AN=8;AO=91;CIGAR=1X;DP=152;DPB=152;DPRA=0;EPP=200.614;EPPR=135.47;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.945055;PAIREDR=0.95082;PAO=0;PQA=0;PQR=0;PRO=0;QA=3559;QR=2131;RO=61;RPL=0;RPP=200.614;RPPR=135.47;RPR=91;RUN=1;SAF=91;SAP=200.614;SAR=0;SRF=61;SRP=135.47;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:39:11,28:11:387:28:1101:-87.6343,0,-23.4238 0/1:68:35,33:35:1222:33:1269:-94.0029,0,-89.8015 0/1:35:13,22:13:452:22:882:-69.1546,0,-30.4729 0/1:10:2,8:2:70:8:307:-24.9768,0,-3.6371 dDocent_Contig_7216 11 . A T 211.127 . AB=0.195122;ABP=36.112;AC=1;AF=0.125;AN=8;AO=8;CIGAR=2X;DP=188;DPB=188;DPRA=0.561644;EPP=20.3821;EPPR=365.646;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.9521;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=327;QR=6680;RO=167;RPL=0;RPP=20.3821;RPPR=365.646;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=167;SRP=365.646;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:73:68,0,5:68:2704:0,5:0,205:0,-20.47,-243.078,-3.17738,-226.193,-224.688 0|1:41:33,8,0:33:1339:8,0:327,0:-17.4579,0,-108.423,-27.3919,-110.831,-137.815 0|0:63:56,0,7:56:2240:0,7:0,285:-7.04622,-23.9039,-208.409,0,-184.91,-182.803 0|0:11:10,0,1:10:397:0,1:0,41:-0.783237,-3.79354,-36.4634,0,-33.0782,-32.7772 dDocent_Contig_7217 41 . A C 145.03 . AB=0.25;ABP=18.2106;AC=2;AF=0.25;AN=8;AO=7;CIGAR=1X2M1I2M;DP=36;DPB=37.4;DPRA=3.5;EPP=18.2106;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=275;QR=1142;RO=29;RPL=0;RPP=18.2106;RPPR=65.983;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:6:6,0:6:239:0:0:0,-1.80618,-21.885 0|1:18:12,6:12:482:6:236:-16.1934,0,-38.3132 0|1:10:9,1:9:344:1:39:-0.886264,0,-28.3009 0|0:2:2,0:2:77:0:0:0,-0.60206,-7.30883 dDocent_Contig_7218 17 . G T 383.371 . AB=0.259259;ABP=30.1939;AC=3;AF=0.375;AN=8;AO=17;CIGAR=1X;DP=119;DPB=119;DPRA=0.738739;EPP=39.9253;EPPR=224.5;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.941176;PAO=0;PQA=0;PQR=0;PRO=0;QA=655;QR=4046;RO=102;RPL=0;RPP=39.9253;RPPR=224.5;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=102;SRP=224.5;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:54:40,14:40:1574:14:532:-31.9551,0,-125.64 0/0:37:37,0:37:1473:0:0:0,-11.1381,-132.818 0/0:26:25,1:25:999:1:41:0,-3.73221,-86.1111 1/1:2:0,2:0:0:2:82:-7.77968,-0.60206,0 dDocent_Contig_7219 14 . T C 971.447 . AB=0.359223;ABP=20.7405;AC=4;AF=0.5;AN=8;AO=37;CIGAR=2X;DP=103;DPB=103;DPRA=0;EPP=83.3548;EPPR=146.327;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1490;QR=2666;RO=66;RPL=0;RPP=83.3548;RPPR=146.327;RPR=37;RUN=1;SAF=37;SAP=83.3548;SAR=0;SRF=66;SRP=146.327;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:29:15,14:15:607:14:568:-42.7325,0,-46.2388 0|1:37:26,11:26:1050:11:437:-28.544,0,-83.6522 0|1:21:13,8:13:522:8:324:-23.2074,0,-41.0058 0|1:16:12,4:12:487:4:161:-10.0588,0,-39.3646 dDocent_Contig_7220 2 . A C 442.661 . AB=0.301205;ABP=31.5011;AC=4;AF=0.5;AN=8;AO=25;CIGAR=1X;DP=83;DPB=83;DPRA=0;EPP=57.2971;EPPR=128.956;GTI=0;LEN=1;MEANALT=1;MQM=59.16;MQMR=59.5862;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.758621;PAO=0;PQA=0;PQR=0;PRO=0;QA=837;QR=2126;RO=58;RPL=0;RPP=57.2971;RPPR=128.956;RPR=25;RUN=1;SAF=0;SAP=57.2971;SAR=25;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:17,5:17:625:5:170:-9.00994,0,-49.9322 0/1:22:14,8:14:515:8:259:-17.0019,0,-40.0688 0/1:31:21,10:21:768:10:339:-21.507,0,-60.1148 0/1:8:6,2:6:218:2:69:-4.14442,0,-17.5646 dDocent_Contig_7221 28 . T A 3053.33 . AB=0.702128;ABP=53.0466;AC=4;AF=0.5;AN=8;AO=99;CIGAR=1X;DP=141;DPB=141;DPRA=0;EPP=217.986;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.333333;PAIREDR=0.952381;PAO=0;PQA=0;PQR=0;PRO=0;QA=3933;QR=1612;RO=42;RPL=0;RPP=217.986;RPPR=94.2121;RPR=99;RUN=1;SAF=99;SAP=217.986;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:40:11,29:11:432:29:1150:-91.7439,0,-27.1937 0/1:40:9,31:9:346:31:1227:-98.6671,0,-19.4573 0/1:29:7,22:7:267:22:878:-70.6027,0,-15.6599 0/1:32:15,17:15:567:17:678:-51.717,0,-41.7309 dDocent_Contig_7223 18 . C A 45.2582 . AB=0.214286;ABP=12.937;AC=2;AF=0.25;AN=8;AO=3;CIGAR=1X;DP=51;DPB=51;DPRA=0.378378;EPP=9.52472;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=119;QR=1878;RO=48;RPL=0;RPP=9.52472;RPPR=107.241;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:5:3,2:3:118:2:78:-5.89815,0,-9.49705 0/1:9:8,1:8:301:1:41:-1.3853,0,-24.7261 0/0:18:18,0:18:711:0:0:0,-5.41854,-64.3136 0/0:19:19,0:19:748:0:0:0,-5.71957,-67.6379 dDocent_Contig_7224 51 . T G 576.353 . AB=0.366667;ABP=12.2752;AC=2;AF=0.25;AN=8;AO=25;CIGAR=1X;DP=109;DPB=109;DPRA=0;EPP=57.2971;EPPR=185.414;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=991;QR=3300;RO=84;RPL=25;RPP=57.2971;RPPR=185.414;RPR=0;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=84;SRP=185.414;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:19,9:19:763:9:357:-24.0598,0,-60.5626 0/0:30:28,2:28:1106:2:82:0,-1.25122,-92.0401 0/1:32:19,13:19:738:13:514:-36.9734,0,-57.1084 0/0:19:18,1:18:693:1:38:0,-1.9223,-58.8831 dDocent_Contig_7225 19 . T C 3927.57 . AB=0.603865;ABP=22.4067;AC=5;AF=0.625;AN=8;AO=125;CIGAR=1X3M;DP=207;DPB=207;DPRA=0;EPP=274.444;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1.75;MQM=60;MQMR=53.8537;NS=4;NUMALT=2;ODDS=0;PAIRED=0.96;PAIREDR=0.829268;PAO=0;PQA=0;PQR=0;PRO=0;QA=4970;QR=1614;RO=41;RPL=0;RPP=274.444;RPPR=92.0407;RPR=125;RUN=1;SAF=125;SAP=274.444;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:45:17,2,26:17:654:2,26:80,1024:-79.343,-82.3824,-124.177,0,-40.4945,-34.7463 0|1:54:10,0,44:10:405:0,44:0,1739:-140.478,-143.489,-176.886,0,-33.8003,-20.555 1|1:45:5,18,22:5:197:18,22:723,890:-74.4237,-57.1832,-67.9701,-2.40893,0,-12.0467 0|1:63:9,21,33:9:358:21,33:818,1317:-105.91,-87.8628,-111.017,0,-8.87441,-19.6181 dDocent_Contig_7226 11 . C T 70.7571 . AB=0.15625;ABP=35.8538;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X;DP=129;DPB=129;DPRA=2.19608;EPP=22.5536;EPPR=263.587;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=55.775;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.825;PAO=0;PQA=0;PQR=0;PRO=0;QA=348;QR=4803;RO=120;RPL=0;RPP=22.5536;RPPR=263.587;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=120;SRP=263.587;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:32:27,5:27:1089:5:197:-8.47361,0,-75.1155 0/0:40:39,1:39:1570:1:37:0,-8.34337,-134.398 0/0:40:37,3:37:1460:3:114:0,-1.40898,-118.251 0/0:17:17,0:17:684:0:0:0,-5.11751,-59.6766 dDocent_Contig_7227 25 . A T 1860.75 . AB=0.590476;ABP=10.476;AC=4;AF=0.5;AN=8;AO=62;CIGAR=1X;DP=105;DPB=105;DPRA=0;EPP=137.642;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2486;QR=1694;RO=43;RPL=0;RPP=137.642;RPPR=96.3836;RPR=62;RUN=1;SAF=62;SAP=137.642;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:10,7:10:387:7:284:-20.8159,0,-30.0634 0/1:37:6,31:6:237:31:1242:-100.91,0,-10.5639 0/1:32:13,19:13:520:19:760:-59.0868,0,-37.5138 0/1:19:14,5:14:550:5:200:-12.6601,0,-44.1181 dDocent_Contig_7228 13 . G C 341.489 . AB=0.202381;ABP=67.6375;AC=2;AF=0.25;AN=8;AO=17;CIGAR=1X;DP=155;DPB=155;DPRA=1.1831;EPP=39.9253;EPPR=302.673;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=690;QR=5486;RO=138;RPL=0;RPP=39.9253;RPPR=302.673;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=138;SRP=302.673;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:47:47,0:47:1819:0:0:0,-14.1484,-163.926 0/0:24:24,0:24:962:0:0:0,-7.22472,-86.8779 0/1:46:40,6:40:1618:6:245:-8.58209,0,-132.001 0/1:38:27,11:27:1087:11:445:-28.9648,0,-86.6766 dDocent_Contig_7230 53 . C T 831.971 . AB=0.239264;ABP=99.2611;AC=4;AF=0.5;AN=8;AO=39;CIGAR=1X;DP=163;DPB=163;DPRA=0;EPP=87.6977;EPPR=272.273;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1536;QR=4874;RO=124;RPL=39;RPP=87.6977;RPPR=272.273;RPR=0;RUN=1;SAF=39;SAP=87.6977;SAR=0;SRF=124;SRP=272.273;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:53:39,14:39:1525:14:560:-34.7888,0,-121.543 0/1:37:29,8:29:1117:8:321:-18.1198,0,-89.6677 0/1:45:35,10:35:1387:10:392:-22.0901,0,-111.54 0/1:28:21,7:21:845:7:263:-15.5963,0,-67.9348 dDocent_Contig_7231 18 . C A 144.819 . AB=0.212121;ABP=26.7649;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=107;DPB=107;DPRA=1.33784;EPP=18.2106;EPPR=220.158;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.98;PAO=0;PQA=0;PQR=0;PRO=0;QA=286;QR=3963;RO=100;RPL=0;RPP=18.2106;RPPR=220.158;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=100;SRP=220.158;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:23:23,0:23:916:0:0:0,-6.92369,-82.7435 0/1:33:26,7:26:1033:7:286:-16.1808,0,-83.3261 0/0:38:38,0:38:1489:0:0:0,-11.4391,-134.261 0/0:13:13,0:13:525:0:0:0,-3.91339,-47.5972 dDocent_Contig_7232 18 . T C 2358.49 . AB=0.0866142;ABP=191.518;AC=0;AF=0;AN=8;AO=11;CIGAR=8M1X1M1X2M1X3M;DP=231;DPB=232.118;DPRA=0;EPP=26.8965;EPPR=244.044;GTI=0;LEN=1;MEANALT=4.5;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=427;QR=4341;RO=111;RPL=0;RPP=26.8965;RPPR=244.044;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=111;SRP=244.044;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:73:20,42,2,7:20:779:42,2,7:1659,67,276:-130.497,0,-51.3809,-131.096,-58.6039,-194.512,-113.81,-41.3147,-172.407,-175.722 0|0:54:31,13,5,4:31:1217:13,5,4:508,201,151:-32.4329,0,-96.1816,-25.1966,-83.529,-123.786,-29.391,-87.7204,-112.916,-128.277 0|0:60:30,20,8,0:30:1182:20,8,0:772,309,0:-54.3628,0,-91.2278,-38.0177,-71.8739,-132.858,-63.3937,-97.2484,-135.266,-160.641 0|0:44:30,11,3,0:30:1163:11,3,0:426,118,0:-25.9542,0,-92.2259,-25.2771,-85.83,-119.917,-34.9851,-95.5372,-120.82,-130.527 dDocent_Contig_7233 42 . C T 708.842 . AB=0.510638;ABP=3.0565;AC=2;AF=0.25;AN=8;AO=25;CIGAR=13M1X1M;DP=110;DPB=112;DPRA=0;EPP=57.2971;EPPR=150.67;GTI=0;LEN=1;MEANALT=2.66667;MQM=60;MQMR=60;NS=4;NUMALT=4;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=982;QR=2628;RO=68;RPL=0;RPP=57.2971;RPPR=150.67;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=68;SRP=150.67;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:41:30,2,3,4,0:30:1166:2,3,4,0:81,113,162,0:-4.34996,-6.69294,-101.926,-4.11805,-93.2702,-99.0475,0,-89.1673,-86.5896,-94.6438,-13.3809,-102.528,-99.9505,-95.8479,-109.209 0|0:22:20,0,0,0,1:20:773:0,0,0,1:0,0,0,41:0,-6.0206,-69.4883,-6.0206,-69.4883,-69.4883,-6.0206,-69.4883,-69.4883,-69.4883,-2.63157,-66.1032,-66.1032,-66.1032,-65.8022 0|1:36:14,2,0,0,20:14:531:2,0,0,20:81,0,0,795:-61.2248,-58.7594,-101.683,-65.4392,-102.285,-108.965,-65.4392,-102.285,-108.965,-108.965,0,-36.8284,-43.5108,-43.5108,-37.4902 0|1:11:4,1,0,0,4:4:158:1,0,0,4:41,0,0,146:-10.7069,-8.52124,-21.2319,-11.911,-21.533,-24.9197,-11.911,-21.533,-24.9197,-24.9197,0,-9.6177,-13.0046,-13.0046,-11.8005 dDocent_Contig_7234 127 . C A 1631.27 . AB=0.38009;ABP=30.6106;AC=4;AF=0.5;AN=8;AO=84;CIGAR=1X;DP=221;DPB=221;DPRA=0;EPP=185.414;EPPR=300.502;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2621;QR=4595;RO=137;RPL=0;RPP=185.414;RPPR=300.502;RPR=84;RUN=1;SAF=0;SAP=185.414;SAR=84;SRF=0;SRP=300.502;SRR=137;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:65:48,17:48:1618:17:545:-29.791,0,-126.341 0/1:96:50,46:50:1635:46:1445:-101.43,0,-118.528 0/1:36:22,14:22:760:14:435:-28.6128,0,-57.8832 0/1:24:17,7:17:582:7:196:-10.6911,0,-45.4781 dDocent_Contig_7235 96 . G A 595.21 . AB=0.37037;ABP=14.8328;AC=4;AF=0.5;AN=8;AO=30;CIGAR=1X;DP=81;DPB=81;DPRA=0;EPP=68.1545;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.733333;PAIREDR=0.627451;PAO=0;PQA=0;PQR=0;PRO=0;QA=1000;QR=1738;RO=51;RPL=30;RPP=68.1545;RPPR=113.755;RPR=0;RUN=1;SAF=30;SAP=68.1545;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:23,5:23:776:5:168:-7.02206,0,-61.7237 0/1:19:5,14:5:171:14:466:-36.54,0,-10.0071 0/1:23:17,6:17:591:6:206:-11.953,0,-46.5938 0/1:11:6,5:6:200:5:160:-11.4038,0,-15.0163 dDocent_Contig_7236 14 . T C 1094.02 . AB=0.344538;ABP=27.9914;AC=4;AF=0.5;AN=8;AO=41;CIGAR=11M1X1M;DP=119;DPB=116;DPRA=0;EPP=92.0407;EPPR=133.299;GTI=0;LEN=1;MEANALT=3.75;MQM=54.122;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=0.966667;PAO=0;PQA=0;PQR=0;PRO=0;QA=1629;QR=2291;RO=60;RPL=0;RPP=92.0407;RPPR=133.299;RPR=41;RUN=1;SAF=41;SAP=92.0407;SAR=0;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:37:30,2,0,3:30:1141:2,0,3:34,0,120:-0.950083,-8.09513,-101.164,-9.98098,-101.766,-103.678,0,-91.9042,-93.8151,-92.912 0|1:32:13,6,1,10:13:502:6,1,10:102,39,406:-29.4915,-27.7096,-67.1345,-30.1944,-65.7346,-71.1582,0,-35.632,-38.1308,-38.3302 0|1:22:6,1,0,14:6:223:1,0,14:17,0,547:-43.0515,-43.911,-61.8556,-44.8577,-62.1567,-63.1077,0,-17.4144,-18.3481,-14.1336 0|1:28:11,0,2,14:11:425:0,2,14:0,78,556:-42.2473,-45.5587,-80.4621,-39.1477,-74.0505,-73.4485,0,-34.899,-28.487,-30.6846 dDocent_Contig_7237 62 . A T 155.968 . AB=0.22449;ABP=35.3165;AC=4;AF=0.5;AN=8;AO=11;CIGAR=1M1I1M1X1M1X;DP=49;DPB=51.2;DPRA=0;EPP=26.8965;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=53.7273;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=387;QR=1336;RO=38;RPL=11;RPP=26.8965;RPPR=85.5263;RPR=0;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:10:9,1:9:315:1:35:-0.484269,0,-25.6769 0|1:19:14,5:14:491:5:175:-10.3533,0,-38.7997 0|1:15:13,2:13:456:2:71:-2.2179,0,-36.8553 0|1:5:2,3:2:74:3:106:-8.35944,0,-5.52073 dDocent_Contig_7238 114 . A G 100.45 . AB=0.142857;ABP=34.0313;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X3M1X;DP=69;DPB=69;DPRA=0;EPP=16.0391;EPPR=113.755;GTI=0;LEN=1;MEANALT=2.5;MQM=40;MQMR=44.6667;NS=4;NUMALT=4;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=199;QR=1655;RO=51;RPL=0;RPP=16.0391;RPPR=113.755;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=113.755;SRR=51;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:25:21,2,0,0,2:21:677:2,0,0,2:69,0,0,70:0,-0.910567,-54.1973,-6.32163,-54.7994,-60.2135,-6.32163,-54.7994,-60.2135,-60.2135,-0.836476,-49.3145,-54.7289,-54.7289,-54.1268 0|1:28:19,4,0,3,2:19:609:4,0,3,2:130,0,105,63:-4.48244,0,-47.1512,-10.202,-48.3553,-58.5611,-1.96914,-40.1277,-50.3339,-49.4308,-5.26938,-43.4196,-53.6252,-45.3979,-53.0232 0|0:13:10,0,0,0,3:10:334:0,0,0,3:0,0,0,103:-5.40355,-8.41384,-35.2546,-8.41384,-35.2546,-35.2546,-8.41384,-35.2546,-35.2546,-35.2546,0,-27.1732,-27.1732,-27.1732,-26.2701 0|0:3:1,0,2,0,0:1:35:0,2,0,0:0,70,0,0:-5.52024,-5.82127,-8.56288,0,-3.07967,-2.47761,-5.82127,-8.56288,-3.07967,-8.56288,-5.82127,-8.56288,-3.07967,-8.56288,-8.56288 dDocent_Contig_7239 7 . T C 182.229 . AB=0.0252101;ABP=236.015;AC=3;AF=0.375;AN=8;AO=7;CIGAR=1X3M;DP=209;DPB=209;DPRA=0;EPP=18.2106;EPPR=374.332;GTI=0;LEN=1;MEANALT=3.66667;MQM=60;MQMR=59.6959;NS=4;NUMALT=3;ODDS=2.77556e-17;PAIRED=0.142857;PAIREDR=0.444444;PAO=0;PQA=0;PQR=0;PRO=0;QA=267;QR=6544;RO=171;RPL=0;RPP=18.2106;RPPR=374.332;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=171;SRP=374.332;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:57:47,8,1,1:47:1795:8,1,1:287,38,41:-9.22716,0,-144.854,-20.2575,-144.145,-167.245,-19.9866,-143.877,-164.162,-166.977 0|1:62:49,7,2,4:49:1881:7,2,4:273,74,162:-7.68891,0,-150.842,-16.3897,-146.896,-168.736,-9.07513,-139.59,-155.979,-160.828 0|0:63:55,1,4,1:55:2092:1,4,1:39,155,41:0,-13.3479,-184.635,-3.80501,-172.201,-174.203,-13.1669,-181.552,-172.023,-184.457 0|1:27:20,4,0,3:20:776:4,0,3:155,0,121:-6.70458,0,-62.5426,-12.7252,-63.7468,-76.4805,-2.74421,-53.7705,-66.5046,-65.6015 dDocent_Contig_7240 1 . N A 306.373 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=16;CIGAR=1X3M1X;DP=16;DPB=16;DPRA=0;EPP=37.7539;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=20.75;MQMR=0;NS=3;NUMALT=1;ODDS=1.69407e-21;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=558;QR=0;RO=0;RPL=0;RPP=37.7539;RPPR=0;RPR=16;RUN=1;SAF=0;SAP=37.7539;SAR=16;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:4:0,4:0:0:4:139:-8.75009,-1.20412,0 1|1:8:0,8:0:0:8:280:-12.6598,-2.40824,0 .:.:.:.:.:.:.:. 1|1:4:0,4:0:0:4:139:-8.75009,-1.20412,0 dDocent_Contig_7241 28 . C G 84.0617 . AB=0.166667;ABP=31.9633;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=134;DPB=134;DPRA=1.39286;EPP=20.3821;EPPR=107.861;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.375;PAIREDR=0.730159;PAO=0;PQA=0;PQR=0;PRO=0;QA=328;QR=4895;RO=126;RPL=0;RPP=20.3821;RPPR=276.616;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=102;SRP=107.861;SRR=24;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:25,5:25:984:5:205:-9.80411,0,-79.8248 0/0:48:45,3:45:1762:3:123:0,-2.98465,-147.337 0/0:36:36,0:36:1391:0:0:0,-10.8371,-125.453 0/0:20:20,0:20:758:0:0:0,-6.0206,-68.5383 dDocent_Contig_7242 1 . N G 64.5749 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=68;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:68:-6.45641,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_7243 135 . T G 85.3669 . AB=0.444444;ABP=3.25157;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=112;DPB=112;DPRA=1.07407;EPP=13.8677;EPPR=235.358;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=175;QR=3566;RO=107;RPL=0;RPP=13.8677;RPPR=235.358;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=235.358;SRR=107;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:40:40,0:40:1342:0:0:0,-12.0412,-121.075 0/0:49:48,1:48:1580:1:35:0,-11.2518,-138.985 0/0:14:14,0:14:469:0:0:0,-4.21442,-42.5312 0/1:9:5,4:5:175:4:140:-10.2357,0,-13.3844 dDocent_Contig_7244 68 . C T 258.41 . AB=0.324324;ABP=12.9286;AC=1;AF=0.125;AN=8;AO=12;CIGAR=1X;DP=142;DPB=142;DPRA=1.05714;EPP=29.068;EPPR=285.302;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.907692;PAO=0;PQA=0;PQR=0;PRO=0;QA=426;QR=4479;RO=130;RPL=12;RPP=29.068;RPPR=285.302;RPR=0;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=130;SRP=285.302;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:36:36,0:36:1210:0:0:0,-10.8371,-109.201 0/0:49:49,0:49:1706:0:0:0,-14.7505,-153.829 0/1:37:25,12:25:871:12:426:-27.54,0,-67.5701 0/0:20:20,0:20:692:0:0:0,-6.0206,-62.6026 dDocent_Contig_7245 11 . G A 195.09 . AB=0.411765;ABP=4.1599;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=81;DPB=81;DPRA=0.796875;EPP=18.2106;EPPR=163.699;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=285;QR=2966;RO=74;RPL=0;RPP=18.2106;RPPR=163.699;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=74;SRP=163.699;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:10,7:10:398:7:285:-20.9069,0,-31.0593 0/0:26:26,0:26:1045:0:0:0,-7.82678,-94.3409 0/0:20:20,0:20:798:0:0:0,-6.0206,-72.1368 0/0:18:18,0:18:725:0:0:0,-5.41854,-65.5762 dDocent_Contig_7246 22 . C T 125.697 . AB=0.12;ABP=65.7224;AC=5;AF=0.625;AN=8;AO=8;CIGAR=1X;DP=52;DPB=52;DPRA=0;EPP=20.3821;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.25;PAIREDR=0.840909;PAO=0;PQA=0;PQR=0;PRO=0;QA=321;QR=1741;RO=44;RPL=0;RPP=20.3821;RPPR=98.5551;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:12,1:12:480:1:40:-0.0822893,0,-39.6382 0/1:20:18,2:18:694:2:78:-1.3827,0,-56.7579 0/1:17:14,3:14:567:3:122:-6.25498,0,-46.255 1/1:2:0,2:0:0:2:81:-7.68573,-0.60206,0 dDocent_Contig_7247 98 . N C 138.36 . AB=0;ABP=0;AC=6;AF=0.75;AN=8;AO=4;CIGAR=1X;DP=5;DPB=5;DPRA=1.33333;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=134;QR=0;RO=0;RPL=4;RPP=11.6962;RPPR=0;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:1:0,0:0:0:0:0:0,0,0 1/1:1:0,1:0:0:1:34:-3.39891,-0.30103,0 1/1:1:0,1:0:0:1:32:-3.19931,-0.30103,0 1/1:2:0,2:0:0:2:68:-6.45793,-0.60206,0 dDocent_Contig_7248 20 . C A 168.321 . AB=0.285714;ABP=14.1779;AC=2;AF=0.25;AN=8;AO=8;CIGAR=1X;DP=54;DPB=54;DPRA=1.07692;EPP=20.3821;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=310;QR=1842;RO=46;RPL=0;RPP=20.3821;RPPR=102.898;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:21:21,0:21:837:0:0:0,-6.32163,-75.6473 0/1:17:11,6:11:443:6:228:-15.7613,0,-35.1082 0/1:11:9,2:9:359:2:82:-4.46835,0,-29.3598 0/0:5:5,0:5:203:0:0:0,-1.50515,-18.6531 dDocent_Contig_7249 11 . C T 508.787 . AB=0.210938;ABP=95.9086;AC=4;AF=0.5;AN=8;AO=27;CIGAR=1X;DP=128;DPB=128;DPRA=0;EPP=61.6401;EPPR=222.329;GTI=0;LEN=1;MEANALT=1;MQM=47.4074;MQMR=59.9703;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.970297;PAO=0;PQA=0;PQR=0;PRO=0;QA=1080;QR=4014;RO=101;RPL=0;RPP=61.6401;RPPR=222.329;RPR=27;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=101;SRP=222.329;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:45:40,5:40:1578:5:192:-3.83583,0,-128.705 0/1:44:32,12:32:1280:12:483:-29.5838,0,-102.22 0/1:25:20,5:20:797:5:203:-10.8146,0,-64.5224 0/1:14:9,5:9:359:5:202:-14.0408,0,-28.453 dDocent_Contig_7250 39 . T A 49.5714 . AB=0.148148;ABP=32.0437;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=43;DPB=43;DPRA=5.0625;EPP=11.6962;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=160;QR=1556;RO=39;RPL=0;RPP=11.6962;RPPR=87.6977;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5,0:5:198:0:0:0,-1.50515,-18.1958 0/1:27:23,4:23:915:4:160:-6.65599,0,-74.5247 0/0:4:4,0:4:161:0:0:0,-1.20412,-14.8753 0/0:7:7,0:7:282:0:0:0,-2.10721,-25.7526 dDocent_Contig_7251 13 . C T 1210.58 . AB=0.278689;ABP=80.8629;AC=4;AF=0.5;AN=8;AO=51;CIGAR=1X;DP=183;DPB=183;DPRA=0;EPP=113.755;EPPR=289.645;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.0980392;PAIREDR=0.545455;PAO=0;PQA=0;PQR=0;PRO=0;QA=2024;QR=5283;RO=132;RPL=0;RPP=113.755;RPPR=289.645;RPR=51;RUN=1;SAF=51;SAP=113.755;SAR=0;SRF=132;SRP=289.645;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:56:39,17:39:1555:17:677:-44.4,0,-123.322 0/1:40:27,13:27:1085:13:515:-34.6541,0,-85.8935 0/1:60:44,16:44:1753:16:630:-38.9675,0,-139.924 0/1:27:22,5:22:890:5:202:-10.4341,0,-72.2778 dDocent_Contig_7252 18 . A T 721.011 . AB=0.21374;ABP=96.251;AC=3;AF=0.375;AN=8;AO=28;CIGAR=1M1D4M1X1M2X;DP=131;DPB=125.3;DPRA=0;EPP=63.8115;EPPR=161.528;GTI=0;LEN=1;MEANALT=2.75;MQM=57.4286;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=0.857143;PAIREDR=0.917808;PAO=0;PQA=0;PQR=0;PRO=0;QA=1086;QR=2861;RO=73;RPL=0;RPP=63.8115;RPPR=161.528;RPR=28;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=73;SRP=161.528;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:64:38,3,9,13:38:1491:3,9,13:122,345,498:-29.4266,-30.7998,-152.518,-12.935,-125.489,-132.844,0,-112.555,-94.6876,-118.706 0|1:20:8,5,7,0:8:306:5,7,0:201,273,0:-20.0227,-5.86177,-29.4601,0,-8.5239,-22.9883,-22.4309,-30.9653,-25.0956,-47.5335 0|1:35:22,2,7,4:22:862:2,7,4:78,269,164:-15.1527,-15.3639,-85.6441,0,-64.4613,-68.7653,-8.23047,-72.7073,-57.3336,-77.9148 0|1:12:5,2,5,0:5:202:2,5,0:75,199,0:-14.897,-10.2667,-26.321,0,-10.5402,-15.1689,-16.4022,-26.923,-16.674,-33.0608 dDocent_Contig_7253 7 . T C 5700.22 . AB=0.0564784;ABP=517.303;AC=0;AF=0;AN=8;AO=17;CIGAR=1X2M2X;DP=301;DPB=301;DPRA=0;EPP=39.9253;EPPR=118.098;GTI=0;LEN=1;MEANALT=3.5;MQM=59.8824;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=640;QR=2054;RO=53;RPL=0;RPP=39.9253;RPPR=118.098;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:106:22,1,63,16:22:852:1,63,16:36,2516,652:-198.746,-202.432,-272.122,0,-67.0565,-51.0283,-154.215,-221.269,-18.8375,-219.39 0|0:128:17,8,78,25:17:660:8,78,25:309,3125,1014:-273.965,-253.705,-305.527,-27.1994,-56.0515,-57.9487,-197.657,-226.51,0,-244.362 0|0:45:9,7,19,9:9:347:7,19,9:257,759,362:-59.7532,-41.461,-67.8467,-0.173501,-7.66908,-22.9508,-33.7956,-41.2879,0,-59.5803 0|0:22:5,1,14,2:5:195:1,14,2:38,563,82:-44.8879,-43.2779,-59.0031,0,-12.9086,-11.8088,-39.6238,-52.535,-9.24968,-55.0485 dDocent_Contig_7254 27 . C T 64.915 . AB=0.12766;ABP=59.6072;AC=1;AF=0.125;AN=8;AO=16;CIGAR=1X;DP=214;DPB=214;DPRA=2.76812;EPP=37.7539;EPPR=432.962;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.994949;PAO=0;PQA=0;PQR=0;PRO=0;QA=642;QR=7827;RO=198;RPL=0;RPP=37.7539;RPPR=432.962;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=198;SRP=432.962;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:89:82,7:82:3261:7:279:0,-1.31143,-268.067 0/0:55:52,3:52:2039:3:119:0,-5.46125,-172.599 0/1:47:41,6:41:1596:6:244:-8.19042,0,-129.725 0/0:23:23,0:23:931:0:0:0,-6.92369,-84.0931 dDocent_Contig_7256 44 . C T 75.4545 . AB=0.178571;ABP=28.1373;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=90;DPB=90;DPRA=1.35484;EPP=13.8677;EPPR=187.585;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=189;QR=3416;RO=85;RPL=0;RPP=13.8677;RPPR=187.585;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=85;SRP=187.585;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:23,5:23:923:5:189:-8.94339,0,-74.9449 0/0:27:27,0:27:1085:0:0:0,-8.12781,-97.9377 0/0:27:27,0:27:1098:0:0:0,-8.12781,-99.1015 0/0:8:8,0:8:310:0:0:0,-2.40824,-28.2537 dDocent_Contig_7257 107 . N A 505.67 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=16;CIGAR=1X;DP=16;DPB=16;DPRA=0;EPP=37.7539;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=551;QR=0;RO=0;RPL=0;RPP=37.7539;RPPR=0;RPR=16;RUN=1;SAF=0;SAP=37.7539;SAR=16;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:14:0,14:0:0:14:481:-43.618,-4.21442,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:70:-6.6474,-0.60206,0 dDocent_Contig_7258 46 . C T 275.262 . AB=0.205479;ABP=58.011;AC=3;AF=0.375;AN=8;AO=15;CIGAR=1X;DP=97;DPB=97;DPRA=1.01389;EPP=35.5824;EPPR=181.071;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=597;QR=3268;RO=82;RPL=0;RPP=35.5824;RPPR=181.071;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=82;SRP=181.071;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:48:40,8:40:1587:8:322:-14.8987,0,-128.614 0/0:24:24,0:24:971:0:0:0,-7.22472,-87.6893 0/1:20:14,6:14:546:6:234:-15.409,0,-43.4569 0/1:5:4,1:4:164:1:41:-2.58942,0,-13.6447 dDocent_Contig_7259 9 . C T 320.398 . AB=0.232323;ABP=64.6231;AC=4;AF=0.5;AN=8;AO=23;CIGAR=1M1I1M2X;DP=99;DPB=104.75;DPRA=0;EPP=52.9542;EPPR=165.871;GTI=0;LEN=1;MEANALT=1.25;MQM=34;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.973333;PAO=0;PQA=0;PQR=0;PRO=0;QA=890;QR=2898;RO=75;RPL=0;RPP=52.9542;RPPR=165.871;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=75;SRP=165.871;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:47:37,9:37:1430:9:340:-12.4098,0,-114.816 0|1:30:26,4:26:1004:4:157:-3.12808,0,-81.6401 0|1:17:8,9:8:312:9:354:-21.8325,0,-23.3274 0|1:5:4,1:4:152:1:39:-1.77556,0,-12.5445 dDocent_Contig_7260 1 . N G 109.108 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=117;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:117:-10.9102,-0.90309,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_7261 101 . N C 60.3701 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=7X;DP=2;DPB=11.4286;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=52.5;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=0;PAIREDR=0;PAO=2;PQA=66;PQR=0;PRO=0;QA=67;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. 1|1:2:0,2:0:0:2:67:-6.03592,-0.60206,0 .:.:.:.:.:.:.:. dDocent_Contig_7262 107 . N A 55.2192 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=32;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=65;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:65:-5.52084,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_7263 17 . G T 585.698 . AB=0.323944;ABP=22.1254;AC=3;AF=0.375;AN=8;AO=25;CIGAR=1X;DP=102;DPB=102;DPRA=0;EPP=57.2971;EPPR=170.214;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1000;QR=3084;RO=77;RPL=0;RPP=57.2971;RPPR=170.214;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=77;SRP=170.214;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:11,1:11:438:1:41:-0.482207,0,-36.1613 0/1:33:15,18:15:594:18:719:-55.0989,0,-43.8635 0/1:26:22,4:22:881:4:159:-6.86555,0,-71.7673 0/0:31:29,2:29:1171:2:81:0,-1.6462,-97.979 dDocent_Contig_7264 112 . G A 183.769 . AB=0.333333;ABP=10.9724;AC=3;AF=0.375;AN=8;AO=11;CIGAR=1X;DP=48;DPB=48;DPRA=0.733333;EPP=26.8965;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=346;QR=1239;RO=37;RPL=0;RPP=26.8965;RPPR=83.3548;RPR=11;RUN=1;SAF=0;SAP=26.8965;SAR=11;SRF=0;SRP=83.3548;SRR=37;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:15:15,0:15:505:0:0:0,-4.51545,-45.7705 0/1:15:13,2:13:423:2:55:-0.708207,0,-33.866 0/1:12:8,4:8:276:4:132:-8.59404,0,-21.5637 0/1:6:1,5:1:35:5:159:-12.8179,0,-1.69245 dDocent_Contig_7265 98 . N C 510.696 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=16;CIGAR=1X;DP=16;DPB=16;DPRA=0;EPP=37.7539;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=545;QR=0;RO=0;RPL=16;RPP=37.7539;RPPR=0;RPR=0;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:68:-6.45788,-0.60206,0 1/1:4:0,4:0:0:4:135:-12.4833,-1.20412,0 1/1:8:0,8:0:0:8:280:-25.54,-2.40824,0 1/1:2:0,2:0:0:2:62:-5.88894,-0.60206,0 dDocent_Contig_7266 10 . A G 123.234 . AB=0.131579;ABP=92.6121;AC=1;AF=0.125;AN=8;AO=14;CIGAR=1X;DP=284;DPB=284;DPRA=1.0796;EPP=33.4109;EPPR=582.793;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=570;QR=10539;RO=267;RPL=0;RPP=33.4109;RPPR=582.793;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=267;SRP=582.793;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:67:65,0:65:2556:0:0:0,-19.5669,-229.801 0/1:76:66,10:66:2614:10:406:-14.0223,0,-212.523 0/0:75:74,1:74:2902:1:41:0,-18.4827,-257.201 0/0:66:62,3:62:2467:3:123:0,-8.27952,-210.787 dDocent_Contig_7267 98 . N T 690.496 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=26;CIGAR=1X;DP=26;DPB=26;DPRA=0;EPP=59.4686;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=748;QR=0;RO=0;RPL=26;RPP=59.4686;RPPR=0;RPR=0;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:5:0,5:0:0:5:151:-13.8892,-1.50515,0 1/1:13:0,13:0:0:13:349:-31.6741,-3.91339,0 1/1:7:0,7:0:0:7:223:-20.3835,-2.10721,0 1/1:1:0,1:0:0:1:25:-2.49986,-0.30103,0 dDocent_Contig_7268 8 . T C 39.885 . AB=0.137931;ABP=36.0317;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=147;DPB=147;DPRA=0.737288;EPP=11.6962;EPPR=313.531;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=38.0979;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.363636;PAO=0;PQA=0;PQR=0;PRO=0;QA=156;QR=5504;RO=143;RPL=0;RPP=11.6962;RPPR=313.531;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=143;SRP=313.531;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:57:57,0:57:2171:0:0:0,-17.1587,-156.552 0/0:53:53,0:53:2050:0:0:0,-15.9546,-140.368 0/1:29:25,4:25:972:4:156:-5.68742,0,-60.5283 0/0:8:8,0:8:311:0:0:0,-2.40824,-17.1296 dDocent_Contig_7269 13 . C G 134.716 . AB=0.272727;ABP=12.8806;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=110;DPB=110;DPRA=0.75;EPP=16.0391;EPPR=211.806;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.980769;PAO=0;PQA=0;PQR=0;PRO=0;QA=238;QR=4170;RO=104;RPL=0;RPP=16.0391;RPPR=228.843;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=102;SRP=211.806;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:65:65,0:65:2611:0:0:0,-19.5669,-235.117 0/0:5:5,0:5:184:0:0:0,-1.50515,-16.9118 0/1:22:16,6:16:647:6:238:-15.1706,0,-51.9401 0/0:18:18,0:18:728:0:0:0,-5.41854,-65.8448 dDocent_Contig_7270 8 . T G 435.768 . AB=0.244186;ABP=51.8937;AC=4;AF=0.5;AN=8;AO=21;CIGAR=1X3M1X1M1X;DP=86;DPB=86;DPRA=0;EPP=48.6112;EPPR=141.985;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.761905;PAIREDR=0.953125;PAO=0;PQA=0;PQR=0;PRO=0;QA=825;QR=2517;RO=64;RPL=0;RPP=48.6112;RPPR=141.985;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=64;SRP=141.985;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:21:15,6:15:587:6:239:-15.5637,0,-46.8492 0|1:34:24,10:24:945:10:390:-25.2229,0,-75.126 0|1:21:16,4:16:627:4:158:-8.18147,0,-50.3478 0|1:10:9,1:9:358:1:38:-0.786969,0,-29.5737 dDocent_Contig_7271 41 . C T 30.1285 . AB=0.25;ABP=7.35324;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=95;DPB=95;DPRA=0.839506;EPP=13.8677;EPPR=198.443;GTI=0;LEN=1;MEANALT=1;MQM=52.8;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=198;QR=3649;RO=90;RPL=0;RPP=13.8677;RPPR=198.443;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=90;SRP=198.443;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:27:27,0:27:1103:0:0:0,-8.12781,-99.55 0/0:35:34,1:34:1383:1:41:0,-6.44148,-120.625 0/0:25:23,2:23:917:2:82:0,-1.36403,-76.6738 0/1:8:6,2:6:246:2:75:-4.71135,0,-20.1119 dDocent_Contig_7272 52 . G A 43.1908 . AB=0.166667;ABP=26.1727;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=89;DPB=89;DPRA=1.10769;EPP=11.6962;EPPR=187.585;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.8118;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.988235;PAO=0;PQA=0;PQR=0;PRO=0;QA=140;QR=3281;RO=85;RPL=4;RPP=11.6962;RPPR=187.585;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=85;SRP=187.585;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:20,4:20:790:4:140:-5.717,0,-64.1422 0/0:19:19,0:19:729:0:0:0,-5.71957,-65.9276 0/0:28:28,0:28:1081:0:0:0,-8.42884,-97.5778 0/0:18:18,0:18:681:0:0:0,-5.41854,-61.6037 dDocent_Contig_7273 74 . C A 259.192 . AB=0.246377;ABP=41.5618;AC=3;AF=0.375;AN=8;AO=18;CIGAR=1X;DP=82;DPB=82;DPRA=0;EPP=42.0968;EPPR=141.985;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=581;QR=2132;RO=64;RPL=18;RPP=42.0968;RPPR=141.985;RPR=0;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=64;SRP=141.985;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:42:35,7:35:1169:7:237:-9.01825,0,-92.8665 0/1:12:10,2:10:345:2:42:-0.376336,0,-27.7712 0/0:13:12,1:12:380:1:30:0,-0.913823,-31.5062 0/1:15:7,8:7:238:8:272:-20.2962,0,-17.2371 dDocent_Contig_7274 39 . C A 205.996 . AB=0.321429;ABP=10.7656;AC=2;AF=0.25;AN=8;AO=10;CIGAR=1X;DP=54;DPB=54;DPRA=2.66667;EPP=24.725;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.9;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=391;QR=1737;RO=44;RPL=0;RPP=24.725;RPPR=98.5551;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:12,5:12:456:5:200:-13.2624,0,-36.2639 0/0:20:19,1:19:768:1:39:0,-2.12404,-65.5445 0/1:11:7,4:7:274:4:152:-10.7351,0,-21.7135 0/0:6:6,0:6:239:0:0:0,-1.80618,-21.8832 dDocent_Contig_7277 151 . T G 80.2541 . AB=0.142857;ABP=49.5419;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=56;DPB=56;DPRA=9;EPP=16.0391;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=241;QR=2011;RO=50;RPL=0;RPP=16.0391;RPPR=111.584;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=111.584;SRR=50;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:42:36,6:36:1448:6:241:-9.42304,0,-117.917 0/0:6:6,0:6:241:0:0:0,-1.80618,-22.0663 0/0:2:2,0:2:79:0:0:0,-0.60206,-7.49724 0/0:6:6,0:6:243:0:0:0,-1.80618,-22.2476 dDocent_Contig_7278 50 . C T 44.5876 . AB=0.230769;ABP=11.1951;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=64;DPB=64;DPRA=0.777778;EPP=11.6962;EPPR=133.299;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.75;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=149;QR=2395;RO=60;RPL=4;RPP=11.6962;RPPR=133.299;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:17:17,0:17:678:0:0:0,-5.11751,-61.3506 0/1:13:10,3:10:406:3:108:-6.1573,0,-32.9866 0/0:19:19,0:19:742:0:0:0,-5.71957,-67.0984 0/0:15:14,1:14:569:1:41:0,-0.420883,-47.4579 dDocent_Contig_7280 30 . T C 567.055 . AB=0.34375;ABP=16.582;AC=2;AF=0.25;AN=8;AO=22;CIGAR=1X3M1I6M;DP=81;DPB=83.2;DPRA=3.76471;EPP=50.7827;EPPR=131.127;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=874;QR=2313;RO=59;RPL=0;RPP=50.7827;RPPR=131.127;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=59;SRP=131.127;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:28:19,9:19:749:9:359:-24.2433,0,-59.3085 0|1:36:23,13:23:904:13:515:-35.8601,0,-70.8352 0|0:13:13,0:13:505:0:0:0,-3.91339,-45.7945 0|0:4:4,0:4:155:0:0:0,-1.20412,-14.3247 dDocent_Contig_7281 10 . A G 1910.75 . AB=0.260586;ABP=155.855;AC=4;AF=0.5;AN=8;AO=80;CIGAR=1X;DP=307;DPB=307;DPRA=0;EPP=176.728;EPPR=495.935;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.05;PAIREDR=0.986784;PAO=0;PQA=0;PQR=0;PRO=0;QA=3218;QR=9075;RO=227;RPL=0;RPP=176.728;RPPR=495.935;RPR=80;RUN=1;SAF=80;SAP=176.728;SAR=0;SRF=227;SRP=495.935;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:39:35,4:35:1407:4:161:-3.13531,0,-115.142 0/1:91:75,16:75:2991:16:636:-30.1815,0,-241.881 0/1:112:93,19:93:3720:19:765:-35.4534,0,-301.088 0/1:65:24,41:24:957:41:1656:-129.695,0,-66.8661 dDocent_Contig_7283 34 . A G 800.906 . AB=0.26087;ABP=71.5533;AC=2;AF=0.25;AN=8;AO=43;CIGAR=1X;DP=237;DPB=237;DPRA=0;EPP=96.3836;EPPR=424.276;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1642;QR=7295;RO=194;RPL=0;RPP=96.3836;RPPR=424.276;RPR=43;RUN=1;SAF=43;SAP=96.3836;SAR=0;SRF=194;SRP=424.276;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:96:73,23:73:2719:23:887:-51.2396,0,-215.997 0/0:79:73,6:73:2771:6:235:0,-2.26028,-228.031 0/1:42:29,13:29:1073:13:495:-32.249,0,-84.2174 0/0:20:19,1:19:732:1:25:0,-3.52074,-63.7101 dDocent_Contig_7284 16 . C A 53.3243 . AB=0.128205;ABP=49.8362;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=143;DPB=143;DPRA=3.6129;EPP=18.2106;EPPR=298.331;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=279;QR=5445;RO=136;RPL=0;RPP=18.2106;RPPR=298.331;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=136;SRP=298.331;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:39:34,5:34:1371:5:201:-6.73035,0,-111.901 0/0:73:71,2:71:2827:2:78:0,-14.5724,-247.131 0/0:25:25,0:25:1005:0:0:0,-7.52575,-90.7462 0/0:6:6,0:6:242:0:0:0,-1.80618,-22.1573 dDocent_Contig_7287 114 . C T 554.562 . AB=0.425926;ABP=5.5839;AC=2;AF=0.25;AN=8;AO=23;CIGAR=1X;DP=78;DPB=78;DPRA=2.25;EPP=52.9542;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=827;QR=1926;RO=55;RPL=0;RPP=52.9542;RPPR=122.441;RPR=23;RUN=1;SAF=0;SAP=52.9542;SAR=23;SRF=0;SRP=122.441;SRR=55;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:16:16,0:16:532:0:0:0,-4.81648,-48.1883 0/1:18:3,15:3:103:15:537:-43.2418,0,-4.19143 0/1:36:28,8:28:1001:8:290:-15.6116,0,-79.5634 0/0:8:8,0:8:290:0:0:0,-2.40824,-26.4488 dDocent_Contig_7288 14 . C T 994.607 . AB=0.292135;ABP=36.4119;AC=4;AF=0.5;AN=8;AO=36;CIGAR=1X;DP=122;DPB=122;DPRA=1.43478;EPP=81.1833;EPPR=189.757;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1429;QR=3392;RO=86;RPL=0;RPP=81.1833;RPPR=189.757;RPR=36;RUN=1;SAF=36;SAP=81.1833;SAR=0;SRF=86;SRP=189.757;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:10:0,10:0:0:10:396:-35.9988,-3.0103,0 0/1:55:34,21:34:1353:21:839:-59.2648,0,-105.48 0/1:34:29,5:29:1140:5:194:-7.59505,0,-92.6512 0/0:23:23,0:23:899:0:0:0,-6.92369,-81.2222 dDocent_Contig_7289 84 . G A 965.244 . AB=0.585714;ABP=7.47733;AC=3;AF=0.375;AN=8;AO=41;CIGAR=1X;DP=80;DPB=80;DPRA=2.33333;EPP=92.0407;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.902439;PAIREDR=0.897436;PAO=0;PQA=0;PQR=0;PRO=0;QA=1356;QR=1322;RO=39;RPL=41;RPP=92.0407;RPPR=87.6977;RPR=0;RUN=1;SAF=41;SAP=92.0407;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:15,12:15:520:12:404:-28.5561,0,-39.0015 0/1:21:10,11:10:343:11:361:-26.4854,0,-24.8803 0/1:22:4,18:4:111:18:591:-46.8782,0,-3.6413 0/0:10:10,0:10:348:0:0:0,-3.0103,-31.656 dDocent_Contig_7290 89 . G A 98.3705 . AB=0.333333;ABP=7.35324;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=82;DPB=82;DPRA=0.822222;EPP=20.3821;EPPR=163.699;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=243;QR=2475;RO=74;RPL=8;RPP=20.3821;RPPR=163.699;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=74;SRP=163.699;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:26:26,0:26:867:0:0:0,-7.82678,-78.337 0/1:18:12,6:12:384:6:185:-11.5353,0,-29.4505 0/0:19:19,0:19:644:0:0:0,-5.71957,-58.2794 0/0:19:17,2:17:580:2:58:0,-0.210295,-47.0138 dDocent_Contig_7291 47 . C A 573.332 . AB=0.234234;ABP=71.1085;AC=3;AF=0.375;AN=8;AO=31;CIGAR=1X;DP=216;DPB=216;DPRA=0;EPP=70.3259;EPPR=402.561;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1254;QR=7384;RO=184;RPL=0;RPP=70.3259;RPPR=402.561;RPR=31;RUN=1;SAF=31;SAP=70.3259;SAR=0;SRF=184;SRP=402.561;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:85:66,19:66:2645:19:769:-43.9432,0,-212.586 0/0:105:99,5:99:3968:5:198:0,-13.5178,-338.902 0/1:21:16,5:16:649:5:205:-12.5134,0,-52.4215 0/1:5:3,2:3:122:2:82:-6.27453,0,-9.86734 dDocent_Contig_7292 89 . G A 296.821 . AB=0.185841;ABP=99.881;AC=2;AF=0.25;AN=8;AO=25;CIGAR=1X;DP=173;DPB=173;DPRA=0;EPP=57.2971;EPPR=324.388;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=882;QR=5082;RO=148;RPL=25;RPP=57.2971;RPPR=324.388;RPR=0;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=148;SRP=324.388;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:54:47,7:47:1643:7:248:-6.40879,0,-131.902 0/1:59:45,14:45:1523:14:490:-26.6711,0,-119.591 0/0:44:41,3:41:1397:3:108:0,-3.17015,-115.946 0/0:16:15,1:15:519:1:36:0,-1.2182,-43.4376 dDocent_Contig_7293 115 . A T 65.2509 . AB=0.238095;ABP=15.5221;AC=2;AF=0.25;AN=8;AO=5;CIGAR=1X3M1X;DP=49;DPB=49;DPRA=0.75;EPP=13.8677;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=175;QR=1478;RO=44;RPL=0;RPP=13.8677;RPPR=98.5551;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=98.5551;SRR=44;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:17:17,0:17:575:0:0:0,-5.11751,-52.071 0|1:16:12,4:12:412:4:140:-8.12845,0,-32.5939 0|0:11:11,0:11:354:0:0:0,-3.31133,-32.173 0|1:5:4,1:4:137:1:35:-1.99348,0,-11.163 dDocent_Contig_7295 36 . C T 101.313 . AB=0.193548;ABP=28.2974;AC=2;AF=0.25;AN=8;AO=6;CIGAR=1X;DP=57;DPB=57;DPRA=1.19231;EPP=16.0391;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=245;QR=2068;RO=51;RPL=0;RPP=16.0391;RPPR=113.755;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:15,2:15:614:2:82:-2.66217,0,-50.4789 0/0:16:16,0:16:650:0:0:0,-4.81648,-58.8327 0/1:14:10,4:10:407:4:163:-10.844,0,-32.7762 0/0:10:10,0:10:397:0:0:0,-3.0103,-36.0832 dDocent_Contig_7296 26 . T C 87.6377 . AB=0.131148;ABP=75.0961;AC=2;AF=0.25;AN=8;AO=8;CIGAR=1X;DP=80;DPB=80;DPRA=3.21053;EPP=20.3821;EPPR=159.356;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.986111;PAO=0;PQA=0;PQR=0;PRO=0;QA=323;QR=2827;RO=72;RPL=0;RPP=20.3821;RPPR=159.356;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=72;SRP=159.356;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:46:42,4:42:1653:4:161:-1.0279,0,-135.16 0/0:6:6,0:6:237:0:0:0,-1.80618,-21.7026 0/1:15:11,4:11:445:4:162:-10.4513,0,-35.8906 0/0:13:13,0:13:492:0:0:0,-3.91339,-44.6166 dDocent_Contig_7297 32 . T C 2909.11 . AB=0.683824;ABP=42.9271;AC=4;AF=0.5;AN=8;AO=93;CIGAR=1X;DP=136;DPB=136;DPRA=0;EPP=204.957;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.935484;PAIREDR=0.976744;PAO=0;PQA=0;PQR=0;PRO=0;QA=3756;QR=1744;RO=43;RPL=0;RPP=204.957;RPPR=96.3836;RPR=93;RUN=1;SAF=93;SAP=204.957;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:45:14,31:14:567:31:1242:-98.5047,0,-37.8261 0/1:32:12,20:12:486:20:811:-63.672,0,-34.4587 0/1:41:14,27:14:568:27:1092:-86.2237,0,-39.1205 0/1:18:3,15:3:123:15:611:-49.9084,0,-6.04625 dDocent_Contig_7298 12 . G A 475.912 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=41;CIGAR=1X1M2X1M1X;DP=41;DPB=41;DPRA=0;EPP=92.0407;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=12.6098;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1544;QR=0;RO=0;RPL=0;RPP=92.0407;RPPR=0;RPR=41;RUN=1;SAF=41;SAP=92.0407;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:2:0,2:0:0:2:76:-2.27806,-0.60206,0 1|1:28:0,28:0:0:28:1056:-32.5741,-8.42884,0 1|1:8:0,8:0:0:8:299:-7.10887,-2.40824,0 1|1:3:0,3:0:0:3:113:-5.02707,-0.90309,0 dDocent_Contig_7299 15 . A G 87.8398 . AB=0.4;ABP=3.87889;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=71;DPB=71;DPRA=0.491803;EPP=11.6962;EPPR=148.499;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=146;QR=2662;RO=67;RPL=0;RPP=11.6962;RPPR=148.499;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=67;SRP=148.499;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:21:21,0:21:829:0:0:0,-6.32163,-74.9245 0/0:30:30,0:30:1193:0:0:0,-9.0309,-107.648 0/1:10:6,4:6:240:4:146:-10.483,0,-18.9651 0/0:10:10,0:10:400:0:0:0,-3.0103,-36.3599 dDocent_Contig_7300 67 . T A 359.965 . AB=0.351351;ABP=10.1116;AC=4;AF=0.5;AN=8;AO=14;CIGAR=1X;DP=70;DPB=70;DPRA=0.395833;EPP=33.4109;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.910714;PAO=0;PQA=0;PQR=0;PRO=0;QA=549;QR=2232;RO=56;RPL=14;RPP=33.4109;RPPR=124.613;RPR=0;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:32:32,0:32:1282:0:0:0,-9.63296,-115.639 0/1:18:11,7:11:445:7:284:-20.5149,0,-34.987 0/1:19:13,6:13:505:6:225:-14.8833,0,-40.0731 1/1:1:0,1:0:0:1:40:-3.99568,-0.30103,0 dDocent_Contig_7302 12 . C T 922.396 . AB=0.485714;ABP=3.13438;AC=4;AF=0.5;AN=8;AO=34;CIGAR=1X;DP=70;DPB=70;DPRA=0;EPP=76.8404;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=57.5882;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.911765;PAIREDR=0.944444;PAO=0;PQA=0;PQR=0;PRO=0;QA=1365;QR=1440;RO=36;RPL=0;RPP=76.8404;RPPR=81.1833;RPR=34;RUN=1;SAF=34;SAP=76.8404;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:11,4:11:434:4:161:-10.3594,0,-34.8957 0/1:23:15,8:15:604:8:324:-20.7797,0,-47.7728 0/1:27:9,18:9:361:18:717:-54.918,0,-24.7256 0/1:5:1,4:1:41:4:163:-13.5533,0,-2.58942 dDocent_Contig_7303 26 . A G 279.032 . AB=0.692308;ABP=7.18621;AC=1;AF=0.125;AN=8;AO=10;CIGAR=1X;DP=63;DPB=63;DPRA=1.1;EPP=24.725;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=405;QR=2127;RO=53;RPL=0;RPP=24.725;RPPR=118.098;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:4,9:4:156:9:365:-29.3011,0,-10.5016 0/0:18:18,0:18:712:0:0:0,-5.41854,-64.4078 0/0:20:19,1:19:769:1:40:0,-2.02492,-65.534 0/0:12:12,0:12:490:0:0:0,-3.61236,-44.4511 dDocent_Contig_7304 11 . A G 168.69 . AB=0.25;ABP=20.3821;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=40;DPB=40;DPRA=2;EPP=20.3821;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=325;QR=1289;RO=32;RPL=0;RPP=20.3821;RPPR=72.4974;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:11,4:11:449:4:164:-10.6344,0,-36.2502 0/1:17:13,4:13:525:4:161:-9.75739,0,-42.478 0/0:8:8,0:8:315:0:0:0,-2.40824,-28.7125 ./.:.:.:.:.:.:.:. dDocent_Contig_7305 31 . G A 303.411 . AB=0.25;ABP=33.4109;AC=2;AF=0.25;AN=8;AO=15;CIGAR=1X;DP=110;DPB=110;DPRA=1.7037;EPP=35.5824;EPPR=176.02;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.747368;PAO=0;PQA=0;PQR=0;PRO=0;QA=597;QR=3785;RO=95;RPL=0;RPP=35.5824;RPPR=209.3;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=91;SRP=176.02;SRR=4;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:18:18,0:18:718:0:0:0,-5.41854,-64.9448 0/0:36:35,1:35:1405:1:41:0,-6.74251,-122.609 0/1:49:36,13:36:1427:13:515:-31.9456,0,-113.936 0/1:7:6,1:6:235:1:41:-1.98736,0,-19.4116 dDocent_Contig_7306 54 . C A 108.037 . AB=0.277778;ABP=10.7311;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=110;DPB=110;DPRA=0.586957;EPP=13.8677;EPPR=79.9631;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=49.1143;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.780952;PAO=0;PQA=0;PQR=0;PRO=0;QA=195;QR=4180;RO=105;RPL=5;RPP=13.8677;RPPR=79.9631;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=105;SRP=231.015;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:55:55,0:55:2201:0:0:0,-16.5566,-160.17 0/1:18:13,5:13:520:5:195:-12.5027,0,-25.049 0/0:19:19,0:19:758:0:0:0,-5.71957,-60.2272 0/0:18:18,0:18:701:0:0:0,-5.41854,-63.4051 dDocent_Contig_7307 12 . T C 130.884 . AB=0.144928;ABP=78.5712;AC=3;AF=0.375;AN=8;AO=12;CIGAR=1X;DP=95;DPB=95;DPRA=0;EPP=29.068;EPPR=183.243;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=484;QR=3319;RO=83;RPL=0;RPP=29.068;RPPR=183.243;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=83;SRP=183.243;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:19,5:19:775:5:205:-11.6103,0,-62.8438 0/1:32:28,4:28:1122:4:157:-4.87346,0,-91.6263 0/1:13:12,1:12:480:1:41:-0.181177,0,-39.6356 0/0:26:24,2:24:942:2:81:0,-0.141046,-77.3885 dDocent_Contig_7308 108 . A T 211.249 . AB=0.4;ABP=5.18177;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X;DP=67;DPB=67;DPRA=1.19048;EPP=24.725;EPPR=126.784;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=335;QR=1975;RO=57;RPL=0;RPP=24.725;RPPR=126.784;RPR=10;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=126.784;SRR=57;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:18:18,0:18:618:0:0:0,-5.41854,-55.9405 0/0:24:24,0:24:831:0:0:0,-7.22472,-75.1055 ./.:.:.:.:.:.:.:. 0/1:25:15,10:15:526:10:335:-22.9488,0,-40.1449 dDocent_Contig_7309 13 . G A 2671.86 . AB=0.465;ABP=5.13834;AC=3;AF=0.375;AN=8;AO=93;CIGAR=1X;DP=217;DPB=217;DPRA=3.92157;EPP=204.957;EPPR=272.273;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3678;QR=4934;RO=124;RPL=0;RPP=204.957;RPPR=272.273;RPR=93;RUN=1;SAF=93;SAP=204.957;SAR=0;SRF=124;SRP=272.273;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:92:14,78:14:559:78:3087:-250.218,0,-22.9548 0/1:86:73,13:73:2895:13:510:-20.3536,0,-234.763 0/1:22:20,2:20:800:2:81:-1.06307,0,-65.6958 0/0:17:17,0:17:680:0:0:0,-5.11751,-61.5308 dDocent_Contig_7310 76 . T C 4493.91 . AB=0.632075;ABP=35.1317;AC=5;AF=0.625;AN=8;AO=145;CIGAR=1X;DP=223;DPB=223;DPRA=0;EPP=317.874;EPPR=107.946;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=55.6104;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.896104;PAO=0;PQA=0;PQR=0;PRO=0;QA=5749;QR=3067;RO=77;RPL=145;RPP=317.874;RPPR=170.214;RPR=0;RUN=1;SAF=145;SAP=317.874;SAR=0;SRF=69;SRP=107.946;SRR=8;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:49:27,22:27:1081:22:886:-65.2982,0,-77.133 0/1:112:28,83:28:1120:83:3271:-260.941,0,-56.9212 0/1:51:22,29:22:866:29:1168:-90.0454,0,-62.8958 1/1:11:0,11:0:0:11:424:-38.5037,-3.31133,0 dDocent_Contig_7311 36 . T A 170.607 . AB=0.35;ABP=6.91895;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=77;DPB=77;DPRA=1.05263;EPP=18.2106;EPPR=155.013;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=268;QR=2763;RO=70;RPL=0;RPP=18.2106;RPPR=155.013;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=70;SRP=155.013;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:13,7:13:506:7:268:-18.4587,0,-39.8589 0/0:37:37,0:37:1477:0:0:0,-11.1381,-133.176 0/0:11:11,0:11:441:0:0:0,-3.31133,-40.0419 0/0:9:9,0:9:339:0:0:0,-2.70927,-30.8505 dDocent_Contig_7312 43 . G A 120.463 . AB=0.140845;ABP=82.5596;AC=1;AF=0.125;AN=8;AO=10;CIGAR=1X;DP=164;DPB=164;DPRA=2.29032;EPP=24.725;EPPR=337.417;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.980519;PAO=0;PQA=0;PQR=0;PRO=0;QA=383;QR=6137;RO=154;RPL=0;RPP=24.725;RPPR=337.417;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=154;SRP=337.417;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:71:61,10:61:2427:10:383:-13.4443,0,-197.206 0/0:36:36,0:36:1450:0:0:0,-10.8371,-130.744 0/0:36:36,0:36:1437:0:0:0,-10.8371,-129.58 0/0:21:21,0:21:823:0:0:0,-6.32163,-74.3829 dDocent_Contig_7313 77 . G C 61.2845 . AB=0.235294;ABP=13.3567;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=109;DPB=109;DPRA=0.554348;EPP=11.6962;EPPR=228.843;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=140;QR=3481;RO=104;RPL=4;RPP=11.6962;RPPR=228.843;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=104;SRP=228.843;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:37:37,0:37:1262:0:0:0,-11.1381,-113.88 0/0:44:44,0:44:1479:0:0:0,-13.2453,-133.401 0/0:11:10,0:10:322:0:0:0,-3.0103,-29.0363 0/1:17:13,4:13:418:4:140:-7.82742,0,-32.8106 dDocent_Contig_7314 47 . C T 33.9795 . AB=0.157895;ABP=22.325;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=74;DPB=74;DPRA=4.6;EPP=13.8677;EPPR=152.842;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=197;QR=2766;RO=69;RPL=0;RPP=13.8677;RPPR=152.842;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=69;SRP=152.842;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:28:27,1:27:1085:1:41:0,-4.33427,-93.8436 0/1:19:16,3:16:645:3:116:-5.09671,0,-52.6619 0/0:22:21,1:21:842:1:40:0,-2.62698,-72.0963 0/0:5:5,0:5:194:0:0:0,-1.50515,-17.8276 dDocent_Contig_7315 25 . G A 1111.62 . AB=0.256545;ABP=101.34;AC=4;AF=0.5;AN=8;AO=49;CIGAR=1M1D7M1X1M;DP=191;DPB=186.545;DPRA=0;EPP=109.412;EPPR=307.016;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1943;QR=5499;RO=140;RPL=0;RPP=109.412;RPPR=307.016;RPR=49;RUN=1;SAF=49;SAP=109.412;SAR=0;SRF=140;SRP=307.016;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:78:49,28:49:1926:28:1112:-76.7799,0,-149.973 0|1:64:52,11:52:2065:11:436:-20.2302,0,-166.688 0|1:21:18,3:18:700:3:117:-4.5882,0,-57.0058 0|1:28:21,7:21:808:7:278:-16.961,0,-64.6117 dDocent_Contig_7316 190 . G T 456.856 . AB=0.414634;ABP=5.60547;AC=3;AF=0.375;AN=8;AO=17;CIGAR=1X;DP=43;DPB=43;DPRA=6.83333;EPP=39.9253;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.884615;PAO=0;PQA=0;PQR=0;PRO=0;QA=692;QR=1064;RO=26;RPL=17;RPP=39.9253;RPPR=59.4686;RPR=0;RUN=1;SAF=0;SAP=39.9253;SAR=17;SRF=0;SRP=59.4686;SRR=26;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:8,11:8:328:11:446:-34.776,0,-24.1708 0/1:11:9,2:9:367:2:82:-4.46835,0,-30.0837 0/1:11:7,4:7:287:4:164:-11.8386,0,-22.8939 0/0:2:2,0:2:82:0:0:0,-0.60206,-7.77968 dDocent_Contig_7317 7 . T A 1182.37 . AB=0.0582524;ABP=352.175;AC=4;AF=0.5;AN=8;AO=12;CIGAR=1X7M;DP=586;DPB=586;DPRA=0;EPP=29.068;EPPR=902;GTI=0;LEN=1;MEANALT=9;MQM=6.16667;MQMR=59.7633;NS=4;NUMALT=4;ODDS=0;PAIRED=0;PAIREDR=0.859903;PAO=0;PQA=0;PQR=0;PRO=0;QA=74;QR=16068;RO=414;RPL=0;RPP=29.068;RPPR=902;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=414;SRP=902;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:160:135,10,13,0,0:135:5229:10,13,0,0:381,510,0,0:-1.31224,-10.9865,-437.53,0,-398.598,-425.653,-41.9513,-440.541,-429.566,-471.509,-41.9513,-440.541,-429.566,-471.509,-471.509 0|1:206:130,14,32,12,8:130:5001:14,32,12,8:529,1256,74,314:-64.2113,-60.3711,-466.773,0,-367.683,-401.015,-102.905,-470.514,-410.177,-509.865,-77.5203,-445.168,-384.829,-487.66,-485.725 0|1:165:106,28,16,0,10:106:4147:28,16,0,10:1065,623,0,409:-53.9458,0,-327.411,-34.6512,-284.638,-365.684,-85.855,-335.84,-370.5,-421.703,-52.0984,-302.087,-336.747,-387.95,-384.939 0|1:55:43,6,3,0,3:43:1691:6,3,0,3:227,118,0,116:-5.45569,0,-137.296,-8.68949,-129.396,-146.898,-18.4,-139.103,-147.801,-157.508,-8.87043,-129.575,-138.273,-147.98,-147.077 dDocent_Contig_7318 17 . T G 65.7421 . AB=0.0810811;ABP=59.4099;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=2M1X5M;DP=93;DPB=90;DPRA=1.02778;EPP=9.52472;EPPR=187.585;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=121;QR=3338;RO=85;RPL=0;RPP=9.52472;RPPR=187.585;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=85;SRP=187.585;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:36:36,0,0:36:1411:0,0:0,0:0,-10.8371,-127.258,-10.8371,-127.258,-127.258 0|1:37:33,0,3:33:1302:0,3:0,121:-0.0425158,-9.97651,-117.097,0,-107.123,-106.219 0|0:20:16,4,0:16:625:4,0:156,0:-8.39652,0,-50.5678,-13.213,-51.7719,-64.5951 .:.:.:.:.:.:.:. dDocent_Contig_7320 45 . A G 166.233 . AB=0.169014;ABP=70.5706;AC=3;AF=0.375;AN=8;AO=12;CIGAR=2X;DP=80;DPB=80;DPRA=2.62963;EPP=29.068;EPPR=150.67;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=469;QR=2723;RO=68;RPL=0;RPP=29.068;RPPR=150.67;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=68;SRP=150.67;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:39:35,4:35:1407:4:159:-2.95127,0,-115.145 0|1:27:20,7:20:793:7:270:-16.5346,0,-63.5575 0|1:5:4,1:4:160:1:40:-2.49053,0,-13.2778 0|0:9:9,0:9:363:0:0:0,-2.70927,-33.0338 dDocent_Contig_7321 139 . C T 68.0139 . AB=0.333333;ABP=5.18177;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=47;DPB=47;DPRA=0.710526;EPP=3.73412;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=117;QR=1499;RO=44;RPL=0;RPP=9.52472;RPPR=98.5551;RPR=3;RUN=1;SAF=2;SAP=3.73412;SAR=1;SRF=0;SRP=98.5551;SRR=44;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:6,3:6:201:3:117:-8.19931,0,-15.7097 0/0:6:6,0:6:209:0:0:0,-1.80618,-19.1511 0/0:20:20,0:20:689:0:0:0,-6.0206,-62.3319 0/0:12:12,0:12:400:0:0:0,-3.61236,-36.3214 dDocent_Contig_7322 35 . T C 956.512 . AB=0.426829;ABP=6.82362;AC=4;AF=0.5;AN=8;AO=35;CIGAR=1X1M1D3M;DP=82;DPB=76.1667;DPRA=0;EPP=79.0118;EPPR=102.898;GTI=0;LEN=1;MEANALT=1.25;MQM=59.7429;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.285714;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1401;QR=1792;RO=46;RPL=0;RPP=79.0118;RPPR=102.898;RPR=35;RUN=1;SAF=35;SAP=79.0118;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:35:22,12:22:856:12:483:-33.4721,0,-67.0196 0|1:26:15,11:15:588:11:442:-32.3092,0,-45.4348 0|1:16:8,8:8:308:8:316:-23.9553,0,-23.265 0|1:5:1,4:1:40:4:160:-13.2789,0,-2.49053 dDocent_Contig_7323 17 . T C 1531.58 . AB=0.176211;ABP=416.432;AC=3;AF=0.375;AN=8;AO=103;CIGAR=1X;DP=744;DPB=744;DPRA=0;EPP=226.672;EPPR=1392.75;GTI=0;LEN=1;MEANALT=1.25;MQM=59.8738;MQMR=59.8594;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.995313;PAO=0;PQA=0;PQR=0;PRO=0;QA=4176;QR=25536;RO=640;RPL=0;RPP=226.672;RPPR=1392.75;RPR=103;RUN=1;SAF=103;SAP=226.672;SAR=0;SRF=640;SRP=1392.75;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:236:192,43:192:7656:43:1745:-86.3927,0,-617.777 0/0:290:267,23:267:10664:23:928:0,-3.47469,-875.068 0/1:135:124,11:124:4946:11:449:-0.126621,0,-404.38 0/1:83:57,26:57:2270:26:1054:-70.1613,0,-179.471 dDocent_Contig_7324 15 . C A 66.1517 . AB=0.333333;ABP=5.18177;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=77;DPB=77;DPRA=0.397059;EPP=9.52472;EPPR=163.699;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=115;QR=2981;RO=74;RPL=0;RPP=9.52472;RPPR=163.699;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=74;SRP=163.699;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:6,3:6:240:3:115:-8.01311,0,-19.2653 0/0:30:30,0:30:1219:0:0:0,-9.0309,-109.979 0/0:26:26,0:26:1036:0:0:0,-7.82678,-93.53 0/0:12:12,0:12:486:0:0:0,-3.61236,-44.0911 dDocent_Contig_7325 77 . A T 42.0563 . AB=0.230769;ABP=11.1951;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=70;DPB=70;DPRA=0.684211;EPP=9.52472;EPPR=148.499;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=102;QR=2290;RO=67;RPL=3;RPP=9.52472;RPPR=148.499;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=67;SRP=148.499;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:10,3:10:336:3:102:-5.60341,0,-26.6524 0/0:21:21,0:21:724:0:0:0,-6.32163,-65.4809 0/0:33:33,0:33:1143:0:0:0,-9.93399,-103.177 0/0:3:3,0:3:87:0:0:0,-0.90309,-8.11768 dDocent_Contig_7326 8 . T C 1046.53 . AB=0.295302;ABP=57.2388;AC=4;AF=0.5;AN=8;AO=44;CIGAR=1X3M1X;DP=149;DPB=149;DPRA=0;EPP=98.5551;EPPR=222.329;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1718;QR=3932;RO=101;RPL=0;RPP=98.5551;RPPR=222.329;RPR=44;RUN=1;SAF=44;SAP=98.5551;SAR=0;SRF=101;SRP=222.329;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:62:50,12,0:50:1943:12,0:472,0:-24.168,0,-156.432,-39.2194,-160.044,-198.871 0|1:54:28,26,0:28:1093:26,0:1007,0:-74.6747,0,-82.4139,-83.1035,-90.2406,-172.956 0|1:20:12,4,4:12:471:4,4:159,155:-9.48372,0,-37.5359,-0.366892,-26.0071,-37.8953 0|1:13:11,2,0:11:425:2,0:80,0:-3.6784,0,-34.6866,-6.98973,-35.2887,-41.8809 dDocent_Contig_7327 98 . N A 57.0024 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=60;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:60:-5.69915,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_7329 98 . N A 478.707 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=15;CIGAR=1X;DP=15;DPB=15;DPRA=0;EPP=35.5824;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=521;QR=0;RO=0;RPL=15;RPP=35.5824;RPPR=0;RPR=0;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:13:0,13:0:0:13:451:-40.9218,-3.91339,0 1/1:2:0,2:0:0:2:70:-6.6474,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_7330 19 . T A 56.4272 . AB=0.125;ABP=61.6401;AC=1;AF=0.125;AN=8;AO=13;CIGAR=1X;DP=197;DPB=197;DPRA=1.66216;EPP=31.2394;EPPR=402.561;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=476;QR=7182;RO=184;RPL=0;RPP=31.2394;RPPR=402.561;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=184;SRP=402.561;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:65:65,0:65:2545:0:0:0,-19.5669,-229.207 0/0:75:68,7:68:2654:7:238:0,-0.836148,-217.262 0/1:48:42,6:42:1633:6:238:-7.34153,0,-132.758 0/0:9:9,0:9:350:0:0:0,-2.70927,-31.8588 dDocent_Contig_7332 123 . A G 112.395 . AB=0.242424;ABP=22.0271;AC=2;AF=0.25;AN=8;AO=10;CIGAR=1X;DP=86;DPB=86;DPRA=0;EPP=24.725;EPPR=168.042;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=329;QR=2621;RO=76;RPL=0;RPP=24.725;RPPR=168.042;RPR=10;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=168.042;SRR=76;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:34:33,1:33:1138:1:35:0,-6.73639,-99.2283 0/1:24:21,3:21:724:3:89:-1.07961,0,-58.2562 0/0:19:18,1:18:619:1:35:0,-2.22094,-52.535 0/1:9:4,5:4:140:5:170:-12.9256,0,-10.2357 dDocent_Contig_7333 15 . T A 538.55 . AB=0.391304;ABP=5.3706;AC=1;AF=0.125;AN=8;AO=9;CIGAR=6M1X2M5D16M;DP=61;DPB=53.5333;DPRA=0;EPP=22.5536;EPPR=50.7827;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=4;NUMALT=5;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=355;QR=868;RO=22;RPL=0;RPP=22.5536;RPPR=50.7827;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:23:5,0,2,4,9,3:5:197:0,2,4,9,3:0,81,153,355,122:-27.6985,-29.2036,-45.4108,-22.5232,-38.7307,-38.1286,-16.6518,-32.8579,-26.1779,-31.6538,0,-16.2068,-9.52598,-3.65633,-13.4975,-19.1381,-35.3458,-28.6653,-22.793,-6.1404,-34.4427 0|0:14:7,2,0,5,0,0:7:274:2,0,5,0,0:76,0,191,0,0:-13.566,-9.44089,-31.3728,-15.6732,-31.9748,-38.2066,0,-16.3069,-22.5373,-21.0321,-15.6732,-31.9748,-38.2066,-22.5373,-38.2066,-15.6732,-31.9748,-38.2066,-22.5373,-38.2066,-38.2066 0|0:11:5,0,2,3,0,0:5:200:0,2,3,0,0:0,81,116,0,0:-8.01651,-9.52166,-26.0001,-2.83672,-19.319,-18.717,0,-16.4754,-9.7946,-15.5723,-9.52166,-26.0001,-19.319,-16.4754,-26.0001,-9.52166,-26.0001,-19.319,-16.4754,-26.0001,-26.0001 0|0:13:5,0,4,4,0,0:5:197:0,4,4,0,0:0,163,155,0,0:-11.9521,-13.4572,-29.6632,0,-16.2109,-15.0068,-0.732987,-16.9329,-3.47963,-15.7288,-13.4572,-29.6632,-16.2109,-16.9329,-29.6632,-13.4572,-29.6632,-16.2109,-16.9329,-29.6632,-29.6632 dDocent_Contig_7334 146 . T C 412.761 . AB=0.518519;ABP=3.09072;AC=1;AF=0.125;AN=8;AO=15;CIGAR=1X;DP=53;DPB=53;DPRA=4.3;EPP=35.5824;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=604;QR=1471;RO=38;RPL=0;RPP=35.5824;RPPR=85.5263;RPR=15;RUN=1;SAF=0;SAP=35.5824;SAR=15;SRF=0;SRP=85.5263;SRR=38;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:4:4,0:4:158:0:0:0,-1.20412,-14.5994 0/1:27:13,14:13:515:14:564:-42.9748,0,-38.5696 0/0:6:6,0:6:238:0:0:0,-1.80618,-21.7925 0/0:16:15,1:15:560:1:40:0,-0.820801,-46.7228 dDocent_Contig_7335 8 . T A 2646.63 . AB=0.150289;ABP=186.782;AC=5;AF=0.625;AN=8;AO=26;CIGAR=1X5M;DP=187;DPB=187;DPRA=0;EPP=59.4686;EPPR=135.47;GTI=0;LEN=1;MEANALT=3.66667;MQM=60;MQMR=60;NS=4;NUMALT=4;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=995;QR=2381;RO=61;RPL=0;RPP=59.4686;RPPR=135.47;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=61;SRP=135.47;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:53:8,1,32,12,0:8:314:1,32,12,0:39,1248,459,0:-111.669,-110.872,-136.397,-11.8311,-34.4545,-28.0268,-76.4137,-99.0344,0,-98.6272,-114.077,-136.698,-37.6598,-102.24,-139.903 0|1:74:21,0,39,10,3:21:817:0,39,10,3:0,1504,384,123:-115.81,-122.131,-189.271,0,-67.1387,-55.3986,-90.6088,-157.748,-35.6181,-154.738,-111.977,-179.117,-56.9845,-147.595,-178.214 0|1:46:23,4,12,4,3:23:899:4,12,4,3:154,463,152,118:-30.7817,-25.692,-98.4015,0,-61.9041,-70.3054,-25.2403,-87.141,-61.4533,-97.9512,-27.998,-89.8996,-64.2115,-89.4492,-101.011 0|1:14:9,0,5,0,0:9:351:0,5,0,0:0,196,0,0:-13.8,-16.5093,-45.3592,0,-29.2408,-27.7357,-16.5093,-45.3592,-29.2408,-45.3592,-16.5093,-45.3592,-29.2408,-45.3592,-45.3592 dDocent_Contig_7336 29 . C T 114.165 . AB=0.263158;ABP=12.2676;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=43;DPB=43;DPRA=2.375;EPP=13.8677;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=205;QR=1501;RO=38;RPL=0;RPP=13.8677;RPPR=85.5263;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:10:10,0:10:404:0:0:0,-3.0103,-36.7195 0/1:19:14,5:14:551:5:205:-13.1154,0,-44.2079 0/0:5:5,0:5:205:0:0:0,-1.50515,-18.835 0/0:9:9,0:9:341:0:0:0,-2.70927,-31.0341 dDocent_Contig_7337 10 . T C 219.13 . AB=0.321429;ABP=10.7656;AC=3;AF=0.375;AN=8;AO=9;CIGAR=1X;DP=34;DPB=34;DPRA=1.55556;EPP=22.5536;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=55.1111;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.88;PAO=0;PQA=0;PQR=0;PRO=0;QA=366;QR=1017;RO=25;RPL=0;RPP=22.5536;RPPR=57.2971;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:2,7:2:81:7:285:-23.2829,0,-4.97646 0/1:11:10,1:10:407:1:40:-0.680091,0,-33.6791 0/0:6:6,0:6:242:0:0:0,-1.80618,-22.1564 0/1:8:7,1:7:287:1:41:-1.33788,0,-23.797 dDocent_Contig_7338 7 . T C 113.481 . AB=0.0625;ABP=56.2114;AC=0;AF=0;AN=8;AO=2;CIGAR=1M1X4M2I1X3M1X2M7I2M1X5M;DP=86;DPB=93.1429;DPRA=2.13333;EPP=7.35324;EPPR=59.4686;GTI=0;LEN=1;MEANALT=11;MQM=40;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=76;QR=1002;RO=26;RPL=0;RPP=7.35324;RPPR=59.4686;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:11:2,0,0,0:2:76:0,0,0:0,0,0:0,-0.60206,-6.83777,-0.60206,-6.83777,-6.83777,-0.60206,-6.83777,-6.83777,-6.83777 0|0:32:12,2,5,0:12:465:2,5,0:76,186,0:-10.7933,-8.55234,-46.1721,0,-32.3748,-36.7207,-14.4057,-46.7741,-38.2259,-52.6251 0|0:24:7,0,1,2:7:262:0,1,2:0,35,80:-3.95054,-6.05775,-27.517,-3.31738,-24.7765,-24.4755,0,-21.4602,-18.7198,-20.8582 0|0:19:5,0,0,0:5:199:0,0,0:0,0,0:0,-1.50515,-17.9021,-1.50515,-17.9021,-17.9021,-1.50515,-17.9021,-17.9021,-17.9021 dDocent_Contig_7339 107 . N C 154.691 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=6;CIGAR=1X;DP=6;DPB=6;DPRA=0;EPP=16.0391;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=163;QR=0;RO=0;RPL=0;RPP=16.0391;RPPR=0;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:37:-3.51479,-0.60206,0 1/1:4:0,4:0:0:4:126:-11.6526,-1.20412,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_7340 84 . G A 47.284 . AB=0.14;ABP=59.2949;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=120;DPB=120;DPRA=2.14286;EPP=18.2106;EPPR=248.387;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=235;QR=3832;RO=113;RPL=7;RPP=18.2106;RPPR=248.387;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=113;SRP=248.387;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:35:35,0:35:1186:0:0:0,-10.536,-107.043 0/1:50:43,7:43:1470:7:235:-6.42736,0,-117.544 0/0:11:11,0:11:364:0:0:0,-3.31133,-33.0798 0/0:24:24,0:24:812:0:0:0,-7.22472,-73.3935 dDocent_Contig_7341 9 . A T 1314.19 . AB=0.470588;ABP=3.64897;AC=5;AF=0.625;AN=8;AO=47;CIGAR=1X;DP=92;DPB=92;DPRA=0;EPP=105.07;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.744681;PAIREDR=0.888889;PAO=0;PQA=0;PQR=0;PRO=0;QA=1789;QR=1718;RO=45;RPL=0;RPP=105.07;RPPR=100.727;RPR=47;RUN=1;SAF=47;SAP=105.07;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:38:14,24:14:534:24:912:-70.9536,0,-36.9648 0/1:27:18,9:18:698:9:343:-23.0993,0,-55.0264 0/1:20:13,7:13:486:7:269:-18.5536,0,-38.061 1/1:7:0,7:0:0:7:265:-24.2108,-2.10721,0 dDocent_Contig_7342 162 . A G 91.7108 . AB=0.307692;ABP=7.18621;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=68;DPB=68;DPRA=0.709091;EPP=11.6962;EPPR=141.985;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=160;QR=2544;RO=64;RPL=4;RPP=11.6962;RPPR=141.985;RPR=0;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=141.985;SRR=64;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:22:22,0:22:875:0:0:0,-6.62266,-79.0604 0/0:27:27,0:27:1072:0:0:0,-8.12781,-96.7671 0/1:13:9,4:9:359:4:160:-10.87,0,-28.7583 0/0:6:6,0:6:238:0:0:0,-1.80618,-21.7933 dDocent_Contig_7345 93 . C T 117.805 . AB=0.214286;ABP=32.7905;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=61;DPB=61;DPRA=0;EPP=24.725;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=338;QR=1773;RO=51;RPL=10;RPP=24.725;RPPR=113.755;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:32:25,7:25:872:7:233:-11.6629,0,-69.1656 0/0:19:18,1:18:621:1:35:0,-2.22094,-52.7151 0/1:10:8,2:8:280:2:70:-3.6371,0,-22.5297 ./.:.:.:.:.:.:.:. dDocent_Contig_7346 28 . G A 905.152 . AB=0.26087;ABP=71.5533;AC=3;AF=0.375;AN=8;AO=38;CIGAR=2X2M;DP=216;DPB=216;DPRA=0;EPP=85.5263;EPPR=374.332;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0.947368;PAO=0;PQA=0;PQR=0;PRO=0;QA=1509;QR=6214;RO=171;RPL=0;RPP=85.5263;RPPR=374.332;RPR=38;RUN=1;SAF=38;SAP=85.5263;SAR=0;SRF=171;SRP=374.332;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:74:56,0,18:56:2052:0,18:0,717:-42.5797,-59.4374,-227.116,0,-168.069,-162.65 0|1:64:46,0,18:46:1678:0,18:0,712:-45.1406,-58.9879,-196.041,0,-137.44,-132.022 0|0:46:44,0,2:44:1599:0,2:0,80:0,-13.2453,-143.781,-6.25559,-137.189,-136.587 0|1:32:25,5,0:25:885:5,0:190,0:-8.19291,0,-70.7242,-15.7187,-72.2293,-87.8149 dDocent_Contig_7347 8 . T C 45.1191 . AB=0.131579;ABP=47.8112;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=86;DPB=86;DPRA=2.375;EPP=13.8677;EPPR=178.9;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.555556;PAO=0;PQA=0;PQR=0;PRO=0;QA=192;QR=3109;RO=81;RPL=0;RPP=13.8677;RPPR=178.9;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=81;SRP=178.9;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:11,0:11:424:0:0:0,-3.31133,-38.5136 0/1:38:33,5:33:1273:5:192:-6.21087,0,-103.422 0/0:21:21,0:21:791:0:0:0,-6.32163,-71.5122 0/0:16:16,0:16:621:0:0:0,-4.81648,-56.2299 dDocent_Contig_7348 8 . T C 1987.87 . AB=0.442424;ABP=7.76122;AC=4;AF=0.5;AN=8;AO=73;CIGAR=1X;DP=165;DPB=165;DPRA=0;EPP=161.528;EPPR=202.786;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2828;QR=3495;RO=92;RPL=0;RPP=161.528;RPPR=202.786;RPR=73;RUN=1;SAF=73;SAP=161.528;SAR=0;SRF=92;SRP=202.786;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:62:38,24:38:1447:24:927:-65.0826,0,-111.844 0/1:71:40,31:40:1516:31:1201:-87.0124,0,-115.339 0/1:20:9,11:9:337:11:428:-32.8548,0,-24.6618 0/1:12:5,7:5:195:7:272:-21.2349,0,-14.3118 dDocent_Contig_7349 30 . G A 328.254 . AB=0.197674;ABP=71.2854;AC=2;AF=0.25;AN=8;AO=20;CIGAR=1X;DP=143;DPB=143;DPRA=0;EPP=46.4397;EPPR=270.101;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.8211;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=0.9;PAIREDR=0.910569;PAO=0;PQA=0;PQR=0;PRO=0;QA=803;QR=4877;RO=123;RPL=0;RPP=46.4397;RPPR=270.101;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=123;SRP=270.101;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:47:39,8:39:1547:8:324:-15.3808,0,-125.328 0/1:39:30,9:30:1163:9:358:-20.8425,0,-93.1573 0/0:34:32,2:32:1285:2:82:0,-2.45534,-108.137 0/0:23:22,1:22:882:1:39:0,-3.02713,-75.7941 dDocent_Contig_7351 14 . C T 382.016 . AB=0.241379;ABP=53.5532;AC=4;AF=0.5;AN=8;AO=21;CIGAR=1X;DP=87;DPB=87;DPRA=0;EPP=48.6112;EPPR=144.156;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.953846;PAO=0;PQA=0;PQR=0;PRO=0;QA=780;QR=2538;RO=65;RPL=0;RPP=48.6112;RPPR=144.156;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=65;SRP=144.156;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:22,6:22:864:6:230:-12.6379,0,-69.6376 0/1:24:19,4:19:725:4:156:-7.3275,0,-58.5133 0/1:21:18,3:18:721:3:116:-4.49607,0,-58.8928 0/1:14:6,8:6:228:8:278:-21.1377,0,-16.664 dDocent_Contig_7352 107 . N A 270.522 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=9;CIGAR=1X;DP=9;DPB=9;DPRA=0;EPP=22.5536;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=10.8435;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=297;QR=0;RO=0;RPL=0;RPP=22.5536;RPPR=0;RPR=9;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:9:0,9:0:0:9:297:-27.0522,-2.70927,0 ./.:.:.:.:.:.:.:. dDocent_Contig_7353 12 . A T 40.3296 . AB=0.107692;ABP=89.9026;AC=1;AF=0.125;AN=8;AO=12;CIGAR=1X;DP=272;DPB=272;DPRA=2.41414;EPP=29.068;EPPR=567.593;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=480;QR=10333;RO=260;RPL=0;RPP=29.068;RPPR=567.593;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=260;SRP=567.593;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:81:77,4:77:3077:4:164:0,-9.23353,-261.858 0/1:65:58,7:58:2298:7:277:-5.73189,0,-187.416 0/0:93:92,1:92:3654:1:39:0,-24.0992,-324.983 0/0:33:33,0:33:1304:0:0:0,-9.93399,-117.621 dDocent_Contig_7355 8 . T A 76.1355 . AB=0.178571;ABP=28.1373;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=106;DPB=106;DPRA=0.927273;EPP=16.0391;EPPR=220.158;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.98;PAO=0;PQA=0;PQR=0;PRO=0;QA=232;QR=3832;RO=100;RPL=0;RPP=16.0391;RPPR=220.158;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=100;SRP=220.158;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:40:40,0:40:1537:0:0:0,-12.0412,-138.6 0/0:15:15,0:15:574:0:0:0,-4.51545,-51.9999 0/0:23:22,1:22:851:1:39:0,-3.02713,-73.0155 0/1:28:23,5:23:870:5:193:-9.31252,0,-70.1912 dDocent_Contig_7356 64 . C T 263.37 . AB=0.309524;ABP=16.2459;AC=1;AF=0.125;AN=8;AO=13;CIGAR=1X;DP=64;DPB=64;DPRA=5.72727;EPP=31.2394;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=445;QR=1773;RO=51;RPL=13;RPP=31.2394;RPPR=113.755;RPR=0;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:42:29,13:29:1013:13:445:-27.7348,0,-78.8403 0/0:12:12,0:12:414:0:0:0,-3.61236,-37.591 0/0:3:3,0:3:105:0:0:0,-0.90309,-9.79616 0/0:7:7,0:7:241:0:0:0,-2.10721,-22.0264 dDocent_Contig_7357 13 . C T 140.346 . AB=0.333333;ABP=7.35324;AC=2;AF=0.25;AN=8;AO=6;CIGAR=1X;DP=71;DPB=71;DPRA=0.339623;EPP=16.0391;EPPR=144.156;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=245;QR=2631;RO=65;RPL=0;RPP=16.0391;RPPR=144.156;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=65;SRP=144.156;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:11,0:11:450:0:0:0,-3.31133,-40.8558 0/0:42:42,0:42:1698:0:0:0,-12.6433,-153.04 0/1:14:11,3:11:442:3:122:-7.15807,0,-35.9212 0/1:4:1,3:1:41:3:123:-10.2607,0,-2.89045 dDocent_Contig_7358 37 . C T 408.277 . AB=0.290323;ABP=26.6864;AC=3;AF=0.375;AN=8;AO=22;CIGAR=1M1I1M1X;DP=112;DPB=119.333;DPRA=0;EPP=50.7827;EPPR=198.443;GTI=0;LEN=1;MEANALT=1;MQM=56.7273;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.636364;PAIREDR=0.977778;PAO=0;PQA=0;PQR=0;PRO=0;QA=869;QR=3469;RO=90;RPL=0;RPP=50.7827;RPPR=198.443;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=90;SRP=198.443;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:50:46,4:46:1797:4:159:0,-0.407272,-147.319 0|1:25:19,6:19:742:6:237:-14.1779,0,-59.5785 0|1:30:20,10:20:731:10:395:-26.7511,0,-57.0694 0|1:7:5,2:5:199:2:78:-5.29609,0,-16.1811 dDocent_Contig_7359 110 . A C 150.084 . AB=0.217391;ABP=18.9659;AC=2;AF=0.25;AN=8;AO=5;CIGAR=1X1M;DP=45;DPB=45;DPRA=2.70588;EPP=13.8677;EPPR=74.6689;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=166;QR=1061;RO=33;RPL=0;RPP=13.8677;RPPR=74.6689;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=74.6689;SRR=33;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:23:16,2,5:16:492:2,5:62,166:-8.62952,-8.47542,-47.3055,0,-34.4714,-37.9434 0|1:5:1,4,0:1:34:4,0:120,0:-9.59247,0,-1.89376,-9.8935,-3.09788,-12.6595 0|0:9:8,1,0:8:273:1,0:24,0:0,-0.309379,-22.5031,-2.40824,-22.8041,-24.6518 0|0:8:8,0,0:8:262:0,0:0,0:0,-2.40824,-23.9007,-2.40824,-23.9007,-23.9007 dDocent_Contig_7360 16 . A T 352.315 . AB=0.318182;ABP=15.6443;AC=2;AF=0.25;AN=8;AO=14;CIGAR=1X;DP=62;DPB=62;DPRA=2.44444;EPP=33.4109;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=568;QR=1903;RO=48;RPL=0;RPP=33.4109;RPPR=107.241;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:16:16,0:16:623:0:0:0,-4.81648,-56.4006 0/1:30:18,12:18:728:12:486:-35.0609,0,-56.814 0/1:14:12,2:12:474:2:82:-3.56526,0,-38.7961 0/0:2:2,0:2:78:0:0:0,-0.60206,-7.4033 dDocent_Contig_7361 33 . T C 296.782 . AB=0.181818;ABP=90.0666;AC=4;AF=0.5;AN=8;AO=18;CIGAR=1X;DP=99;DPB=99;DPRA=0;EPP=42.0968;EPPR=178.9;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=0.987654;PAO=0;PQA=0;PQR=0;PRO=0;QA=722;QR=3184;RO=81;RPL=0;RPP=42.0968;RPPR=178.9;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=81;SRP=178.9;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:15,5:15:579:5:199:-12.2678,0,-46.4146 0/1:44:37,7:37:1462:7:284:-12.6887,0,-118.586 0/1:27:22,5:22:874:5:198:-10.0699,0,-70.8439 0/1:8:7,1:7:269:1:41:-1.68633,0,-22.1619 dDocent_Contig_7362 41 . A G 100.413 . AB=0.363636;ABP=4.78696;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=29;DPB=29;DPRA=2.4;EPP=13.8677;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=56.4;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=197;QR=968;RO=24;RPL=1;RPP=6.91895;RPPR=55.1256;RPR=4;RUN=1;SAF=4;SAP=6.91895;SAR=1;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:7,4:7:281:4:161:-11.5636,0,-22.3503 ./.:.:.:.:.:.:.:. 0/0:5:5,0:5:204:0:0:0,-1.50515,-18.744 0/0:13:12,1:12:483:1:36:0,-0.410691,-40.3185 dDocent_Contig_7363 68 . A C 340.114 . AB=0.275862;ABP=28.3192;AC=2;AF=0.333333;AN=6;AO=16;CIGAR=1X;DP=68;DPB=68;DPRA=2.9;EPP=5.18177;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=603;QR=1845;RO=52;RPL=16;RPP=37.7539;RPPR=115.927;RPR=0;RUN=1;SAF=10;SAP=5.18177;SAR=6;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:22,3:22:782:3:114:-3.10554,0,-63.1775 0/1:33:20,13:20:705:13:489:-34.4176,0,-53.8412 0/0:10:10,0:10:358:0:0:0,-3.0103,-32.5629 ./.:.:.:.:.:.:.:. dDocent_Contig_7365 85 . G A 124.963 . AB=0.461538;ABP=3.17734;AC=2;AF=0.25;AN=8;AO=6;CIGAR=1X;DP=26;DPB=26;DPRA=1;EPP=16.0391;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=212;QR=709;RO=20;RPL=6;RPP=16.0391;RPPR=46.4397;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:8:8,0:8:285:0:0:0,-2.40824,-25.9946 0/1:11:6,5:6:215:5:176:-12.8739,0,-16.3878 0/0:5:5,0:5:174:0:0:0,-1.50515,-16.0017 0/1:2:1,1:1:35:1:36:-2.99621,0,-2.89657 dDocent_Contig_7366 17 . C A 368.855 . AB=0.145946;ABP=204.441;AC=4;AF=0.5;AN=8;AO=27;CIGAR=1X;DP=185;DPB=185;DPRA=0;EPP=61.6401;EPPR=346.103;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.925926;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1074;QR=6385;RO=158;RPL=0;RPP=61.6401;RPPR=346.103;RPR=27;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=158;SRP=346.103;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:39:35,4:35:1401:4:162:-3.22658,0,-114.603 0/1:31:25,6:25:1015:6:242:-12.8254,0,-82.31 0/1:71:58,13:58:2345:13:525:-26.2235,0,-189.825 0/1:44:40,4:40:1624:4:145:-0.155804,0,-133.139 dDocent_Contig_7367 171 . T C 30.272 . AB=0.285714;ABP=5.80219;AC=1;AF=0.125;AN=8;AO=2;CIGAR=2X;DP=36;DPB=36;DPRA=0.724138;EPP=7.35324;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=50;MQMR=60;NS=4;NUMALT=1;ODDS=8.67362e-19;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=69;QR=1113;RO=34;RPL=0;RPP=7.35324;RPPR=76.8404;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=76.8404;SRR=34;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:7:5,2:5:165:2:69:-4.42472,0,-13.0676 0|0:11:11,0:11:359:0:0:0,-3.31133,-32.626 0|0:11:11,0:11:348:0:0:0,-3.31133,-31.6261 0|0:7:7,0:7:241:0:0:0,-2.10721,-22.0264 dDocent_Contig_7368 52 . C T 1501.58 . AB=0.369427;ABP=26.2603;AC=4;AF=0.5;AN=8;AO=58;CIGAR=1X;DP=157;DPB=157;DPRA=0;EPP=128.956;EPPR=217.986;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.959596;PAO=0;PQA=0;PQR=0;PRO=0;QA=2261;QR=3900;RO=99;RPL=58;RPP=128.956;RPPR=217.986;RPR=0;RUN=1;SAF=58;SAP=128.956;SAR=0;SRF=99;SRP=217.986;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:54:36,18:36:1421:18:693:-46.4384,0,-111.892 0/1:36:21,15:21:814:15:585:-42.1511,0,-62.7327 0/1:53:33,20:33:1305:20:800:-56.3647,0,-101.766 0/1:14:9,5:9:360:5:183:-12.6016,0,-28.5492 dDocent_Contig_7369 25 . A G 31.0787 . AB=0.222222;ABP=9.04217;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X;DP=45;DPB=45;DPRA=0.75;EPP=7.35324;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=76;QR=1692;RO=43;RPL=0;RPP=7.35324;RPPR=96.3836;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:7,2:7:269:2:76:-4.5054,0,-21.8608 0/0:4:4,0:4:156:0:0:0,-1.20412,-14.4164 0/0:17:17,0:17:677:0:0:0,-5.11751,-61.2612 0/0:15:15,0:15:590:0:0:0,-4.51545,-53.4391 dDocent_Contig_7370 9 . A G 277.783 . AB=0.265306;ABP=26.4533;AC=3;AF=0.375;AN=8;AO=13;CIGAR=1X;DP=51;DPB=51;DPRA=8.16667;EPP=31.2394;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=499;QR=1419;RO=38;RPL=0;RPP=31.2394;RPPR=85.5263;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:16,4:16:603:4:152:-8.0286,0,-48.5867 0/0:2:2,0:2:69:0:0:0,-0.60206,-6.55132 0/1:12:11,1:11:419:1:37:-0.0854694,0,-34.4495 0/1:17:9,8:9:328:8:310:-23.1461,0,-24.7437 dDocent_Contig_7371 36 . A T 381.442 . AB=0.411765;ABP=5.30951;AC=2;AF=0.25;AN=8;AO=14;CIGAR=1X;DP=109;DPB=109;DPRA=0.453333;EPP=33.4109;EPPR=209.3;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=567;QR=3795;RO=95;RPL=0;RPP=33.4109;RPPR=209.3;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=95;SRP=209.3;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:39:39,0:39:1561:0:0:0,-11.7402,-140.723 0/0:36:36,0:36:1442:0:0:0,-10.8371,-130.031 0/1:19:14,5:14:561:5:202:-12.8425,0,-45.109 0/1:15:6,9:6:231:9:365:-28.6996,0,-16.6387 dDocent_Contig_7372 108 . G A 200.583 . AB=0.526316;ABP=3.12459;AC=1;AF=0.125;AN=8;AO=10;CIGAR=1X;DP=63;DPB=63;DPRA=1.29545;EPP=24.725;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=302;QR=1760;RO=53;RPL=0;RPP=24.725;RPPR=118.098;RPR=10;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=118.098;SRR=53;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:19:19,0:19:645:0:0:0,-5.71957,-58.3683 0/0:20:20,0:20:674:0:0:0,-6.0206,-60.9751 0/1:19:9,10:9:290:10:302:-21.7573,0,-20.6936 0/0:5:5,0:5:151:0:0:0,-1.50515,-13.887 dDocent_Contig_7373 66 . A G 469.921 . AB=0.346154;ABP=13.7006;AC=1;AF=0.125;AN=8;AO=18;CIGAR=1X;DP=94;DPB=94;DPRA=3.71429;EPP=42.0968;EPPR=168.042;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.960526;PAO=0;PQA=0;PQR=0;PRO=0;QA=708;QR=3007;RO=76;RPL=18;RPP=42.0968;RPPR=168.042;RPR=0;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=76;SRP=168.042;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:52:34,18:34:1338:18:708:-48.39,0,-105.03 0/0:22:22,0:22:871:0:0:0,-6.62266,-78.695 0/0:15:15,0:15:601:0:0:0,-4.51545,-54.4268 0/0:5:5,0:5:197:0:0:0,-1.50515,-18.1049 dDocent_Contig_7374 150 . G T 906.025 . AB=0.47619;ABP=3.42391;AC=3;AF=0.375;AN=8;AO=41;CIGAR=1X;DP=103;DPB=103;DPRA=0;EPP=92.0407;EPPR=105.14;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=56.5806;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=0.935484;PAO=0;PQA=0;PQR=0;PRO=0;QA=1372;QR=2161;RO=62;RPL=0;RPP=92.0407;RPPR=137.642;RPR=41;RUN=1;SAF=0;SAP=92.0407;SAR=41;SRF=4;SRP=105.14;SRR=58;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:37:13,24:13:444:24:824:-63.3389,0,-29.1484 0/1:24:20,4:20:688:4:140:-5.72021,0,-51.9379 0/1:23:11,12:11:394:12:373:-26.9413,0,-19.7037 0/0:19:18,1:18:635:1:35:0,-2.22094,-53.9778 dDocent_Contig_7375 135 . C T 35.8186 . AB=0.2;ABP=14.7363;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=119;DPB=119;DPRA=0.432692;EPP=9.52472;EPPR=254.901;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=105;QR=4009;RO=116;RPL=0;RPP=9.52472;RPPR=254.901;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=254.901;SRR=116;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:40:40,0:40:1383:0:0:0,-12.0412,-124.765 0/0:27:27,0:27:946:0:0:0,-8.12781,-85.4525 0/0:37:37,0:37:1252:0:0:0,-11.1381,-112.971 0/1:15:12,3:12:428:3:105:-5.28071,0,-34.3431 dDocent_Contig_7376 117 . C T 60.5376 . 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T C 86.7167 . AB=0.363636;ABP=4.78696;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=40;DPB=40;DPRA=1.13793;EPP=11.6962;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=148;QR=1285;RO=36;RPL=4;RPP=11.6962;RPPR=81.1833;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:11,0:11:395:0:0:0,-3.31133,-35.8906 0/0:8:8,0:8:291:0:0:0,-2.40824,-26.5395 0/0:10:10,0:10:354:0:0:0,-3.0103,-32.1982 0/1:11:7,4:7:245:4:148:-10.3706,0,-19.0787 dDocent_Contig_7391 35 . A G 133.467 . AB=0.190476;ABP=37.9607;AC=2;AF=0.25;AN=8;AO=8;CIGAR=1X;DP=86;DPB=86;DPRA=0.954545;EPP=20.3821;EPPR=172.385;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=318;QR=3097;RO=78;RPL=0;RPP=20.3821;RPPR=172.385;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=78;SRP=172.385;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:12,5:12:490:5:196:-12.8963,0,-39.3336 0/0:26:26,0:26:1015:0:0:0,-7.82678,-91.6396 0/0:18:18,0:18:717:0:0:0,-5.41854,-64.8563 0/1:25:22,3:22:875:3:122:-3.84674,0,-71.5325 dDocent_Contig_7392 14 . G A 150.51 . 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AB=0.246073;ABP=109.981;AC=4;AF=0.5;AN=8;AO=47;CIGAR=1X;DP=191;DPB=191;DPRA=0;EPP=105.07;EPPR=315.702;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1773;QR=5495;RO=144;RPL=0;RPP=105.07;RPPR=315.702;RPR=47;RUN=1;SAF=47;SAP=105.07;SAR=0;SRF=144;SRP=315.702;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:70:45,25:45:1729:25:951:-64.8301,0,-134.794 0/1:76:66,10:66:2537:10:388:-12.3997,0,-205.648 0/1:28:19,9:19:712:9:318:-20.5219,0,-55.9756 0/1:17:14,3:14:517:3:116:-5.70019,0,-41.746 dDocent_Contig_7396 29 . C A 3734.87 . AB=0.349398;ABP=68.4161;AC=5;AF=0.625;AN=8;AO=116;CIGAR=1X1M;DP=332;DPB=332;DPRA=0;EPP=254.901;EPPR=350.446;GTI=0;LEN=1;MEANALT=1.75;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.758621;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4525;QR=6389;RO=160;RPL=0;RPP=254.901;RPPR=350.446;RPR=116;RUN=1;SAF=116;SAP=254.901;SAR=0;SRF=160;SRP=350.446;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:148:93,0,55:93:3705:0,55:0,2172:-151.118,-179.114,-484.194,0,-305.476,-288.92 0|1:88:27,22,39:27:1091:22,39:855,1500:-114.996,-52.8695,-136.2,0,-19.7084,-78.2139 0|1:67:34,22,11:34:1353:22,11:877,417:-61.9996,0,-104.791,-38.0591,-77.2362,-146.147 1|1:29:6,12,11:6:240:12,11:468,436:-52.7717,-16.1143,-32.2729,-18.6872,0,-35.1489 dDocent_Contig_7397 10 . A G 252.838 . AB=0.128205;ABP=237.14;AC=3;AF=0.375;AN=8;AO=26;CIGAR=1X;DP=278;DPB=278;DPRA=0;EPP=59.4686;EPPR=550.221;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.988095;PAO=0;PQA=0;PQR=0;PRO=0;QA=1022;QR=10023;RO=252;RPL=0;RPP=59.4686;RPPR=550.221;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=252;SRP=550.221;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:83:82,1:82:3271:1:41:0,-20.8909,-290.363 0/1:99:85,14:85:3384:14:547:-19.768,0,-274.816 0/1:82:74,8:74:2929:8:313:-3.8465,0,-239.029 0/1:14:11,3:11:439:3:121:-7.06578,0,-35.6486 dDocent_Contig_7398 98 . N C 282.343 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=9;CIGAR=1X;DP=9;DPB=9;DPRA=0;EPP=22.5536;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=10.8435;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=310;QR=0;RO=0;RPL=9;RPP=22.5536;RPPR=0;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:9:0,9:0:0:9:310:-28.2343,-2.70927,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_7400 8 . T A 1457.94 . AB=0.33908;ABP=42.1467;AC=3;AF=0.375;AN=8;AO=59;CIGAR=1X;DP=211;DPB=211;DPRA=1.56757;EPP=131.127;EPPR=330.903;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2250;QR=5811;RO=151;RPL=0;RPP=131.127;RPPR=330.903;RPR=59;RUN=1;SAF=59;SAP=131.127;SAR=0;SRF=151;SRP=330.903;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:64:58,6:58:2233:6:233:-2.07416,0,-181.917 0/0:37:36,0:36:1395:0:0:0,-10.8371,-125.441 0/1:67:37,30:37:1407:30:1147:-83.3607,0,-106.738 0/1:43:20,23:20:776:23:870:-65.6745,0,-57.2239 dDocent_Contig_7402 17 . G A 615.587 . AB=0.314607;ABP=29.5803;AC=3;AF=0.375;AN=8;AO=28;CIGAR=1X;DP=95;DPB=95;DPRA=4.94444;EPP=63.8115;EPPR=148.499;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1030;QR=2610;RO=67;RPL=0;RPP=63.8115;RPPR=148.499;RPR=28;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=67;SRP=148.499;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:13,15:13:519:15:551:-41.5004,0,-38.6271 0/1:41:31,10:31:1183:10:370:-21.308,0,-94.3935 0/1:20:17,3:17:667:3:109:-4.1474,0,-54.3318 0/0:6:6,0:6:241:0:0:0,-1.80618,-22.0663 dDocent_Contig_7403 7 . T C 2315.27 . AB=0.622047;ABP=19.4417;AC=2;AF=0.25;AN=8;AO=84;CIGAR=1X;DP=190;DPB=190;DPRA=0;EPP=185.414;EPPR=233.186;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=0.971698;PAO=0;PQA=0;PQR=0;PRO=0;QA=3221;QR=4055;RO=106;RPL=0;RPP=185.414;RPPR=233.186;RPR=84;RUN=1;SAF=84;SAP=185.414;SAR=0;SRF=106;SRP=233.186;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:68:23,45:23:877:45:1737:-136.116,0,-58.7805 0/1:59:25,34:25:955:34:1292:-98.8068,0,-68.5034 0/0:24:22,2:22:836:2:76:0,-0.0100457,-68.347 0/0:39:36,3:36:1387:3:116:0,-0.922465,-114.294 dDocent_Contig_7404 112 . C A 328.903 . AB=0.386364;ABP=7.94546;AC=3;AF=0.375;AN=8;AO=17;CIGAR=1X1M1X;DP=47;DPB=47;DPRA=4.88889;EPP=39.9253;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=556;QR=1025;RO=30;RPL=0;RPP=39.9253;RPPR=68.1545;RPR=17;RUN=1;SAF=0;SAP=39.9253;SAR=17;SRF=0;SRP=68.1545;SRR=30;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:13:10,3:10:336:3:92:-4.67133,0,-26.6526 0|1:25:12,13:12:417:13:431:-31.5841,0,-30.3376 0|0:3:3,0:3:104:0:0:0,-0.90309,-9.70309 0|1:6:5,1:5:168:1:33:-1.49295,0,-13.6449 dDocent_Contig_7405 15 . G T 54.2119 . AB=0.191489;ABP=41.8658;AC=2;AF=0.25;AN=8;AO=10;CIGAR=1X;DP=104;DPB=104;DPRA=1.59259;EPP=24.725;EPPR=207.129;GTI=0;LEN=1;MEANALT=1;MQM=34.6;MQMR=59.9468;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.989362;PAO=0;PQA=0;PQR=0;PRO=0;QA=343;QR=3706;RO=94;RPL=0;RPP=24.725;RPPR=207.129;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=94;SRP=207.129;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:39:32,7:32:1258:7:253:-5.72864,0,-101.74 0/0:39:38,1:38:1492:1:32:0,-8.54126,-131.313 0/0:18:18,0:18:722:0:0:0,-5.41854,-65.3052 0/1:8:6,2:6:234:2:58:-3.08157,0,-19.0196 dDocent_Contig_7407 7 . T C 2013.64 . AB=0.39011;ABP=22.1002;AC=3;AF=0.375;AN=8;AO=71;CIGAR=1X1M1X3M1X1M1X;DP=182;DPB=182;DPRA=0;EPP=157.185;EPPR=217.986;GTI=0;LEN=1;MEANALT=1.75;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2762;QR=3776;RO=99;RPL=0;RPP=157.185;RPPR=217.986;RPR=71;RUN=1;SAF=71;SAP=157.185;SAR=0;SRF=99;SRP=217.986;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:50:37,5,8:37:1411:5,8:192,326:-15.7709,-11.1582,-125.379,0,-99.9851,-113.337 0|1:78:40,36,2:40:1521:36,2:1405,79:-103.452,0,-113.887,-108.992,-118.223,-233.123 0|1:37:20,15,2:20:767:15,2:586,81:-42.1422,0,-58.4174,-41.482,-56.2518,-103.828 0|1:17:2,15,0:2:77:15,0:579,0:-47.3323,0,-2.19163,-47.9343,-6.70708,-54.2566 dDocent_Contig_7408 54 . G A 864.846 . AB=0.459459;ABP=4.06669;AC=3;AF=0.375;AN=8;AO=34;CIGAR=1M1X4M7D3M1X4M;DP=103;DPB=88.3333;DPRA=0.850575;EPP=76.8404;EPPR=131.127;GTI=0;LEN=1;MEANALT=3.33333;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1235;QR=2268;RO=59;RPL=34;RPP=76.8404;RPPR=131.127;RPR=0;RUN=1;SAF=34;SAP=76.8404;SAR=0;SRF=59;SRP=131.127;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:29:29,0,0,0:29:1118:0,0,0:0,0,0:0,-8.72987,-100.923,-8.72987,-100.923,-100.923,-8.72987,-100.923,-100.923,-100.923 0|1:26:12,1,10,0:12:465:1,10,0:40,380,0:-27.6445,-27.9574,-65.8818,0,-35.0067,-35.2946,-31.2569,-66.1828,-38.3049,-69.4793 0|1:21:6,2,11,2:6:226:2,11,2:66,400,62:-30.8907,-27.3656,-45.2891,0,-13.2241,-15.2414,-27.7266,-40.9205,-13.587,-45.6491 0|1:27:12,2,13,0:12:459:2,13,0:81,455,0:-33.3474,-30.2733,-67.3514,0,-30.9631,-33.7321,-36.9598,-67.9535,-37.6455,-74.6355 dDocent_Contig_7409 17 . C T 750.363 . AB=0.274336;ABP=52.9926;AC=2;AF=0.25;AN=8;AO=31;CIGAR=1X;DP=199;DPB=199;DPRA=1.31395;EPP=70.3259;EPPR=367.818;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1242;QR=6763;RO=168;RPL=0;RPP=70.3259;RPPR=367.818;RPR=31;RUN=1;SAF=31;SAP=70.3259;SAR=0;SRF=168;SRP=367.818;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:77:54,23:54:2171:23:920:-59.9241,0,-172.374 0/0:58:58,0:58:2321:0:0:0,-17.4597,-209.03 0/0:28:28,0:28:1139:0:0:0,-8.42884,-102.787 0/1:36:28,8:28:1132:8:322:-18.5102,0,-91.321 dDocent_Contig_7410 1 . N G 131.89 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=5;CIGAR=1X;DP=5;DPB=5;DPRA=0;EPP=13.8677;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=28.4;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0.4;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=193;QR=0;RO=0;RPL=0;RPP=13.8677;RPPR=0;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:116:-9.09925,-0.90309,0 ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:77:-3.78787,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_7411 18 . A G 629.374 . AB=0.225;ABP=29.2851;AC=5;AF=0.625;AN=8;AO=22;CIGAR=1X;DP=53;DPB=53;DPRA=0;EPP=34.9902;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.863636;PAIREDR=0.935484;PAO=0;PQA=0;PQR=0;PRO=0;QA=876;QR=1261;RO=31;RPL=0;RPP=50.7827;RPPR=70.3259;RPR=22;RUN=1;SAF=20;SAP=34.9902;SAR=2;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:14,2:14:567:2:76:-2.39706,0,-46.556 1/1:13:0,13:0:0:13:519:-47.0551,-3.91339,0 0/1:15:10,5:10:408:5:199:-13.7713,0,-32.5651 0/1:9:7,2:7:286:2:82:-5.07041,0,-23.4055 dDocent_Contig_7412 13 . C G 103.497 . AB=0.363636;ABP=4.78696;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=39;DPB=39;DPRA=3.33333;EPP=13.8677;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=204;QR=1340;RO=33;RPL=0;RPP=13.8677;RPPR=74.6689;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:7,4:7:284:4:163:-11.7471,0,-22.6227 0/0:19:17,1:17:692:1:41:0,-1.73343,-58.5138 0/0:8:8,0:8:324:0:0:0,-2.40824,-29.5292 0/0:1:1,0:1:40:0:0:0,-0.30103,-3.99568 dDocent_Contig_7413 20 . C T 34.8464 . AB=0.25;ABP=7.35324;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X;DP=46;DPB=46;DPRA=0.631579;EPP=7.35324;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.454545;PAO=0;PQA=0;PQR=0;PRO=0;QA=80;QR=1780;RO=44;RPL=0;RPP=7.35324;RPPR=98.5551;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:3:3,0:3:122:0:0:0,-0.90309,-11.3725 0/0:20:20,0:20:813:0:0:0,-6.0206,-73.4848 0/0:15:15,0:15:605:0:0:0,-4.51545,-54.7873 0/1:8:6,2:6:240:2:80:-5.18333,0,-19.5663 dDocent_Contig_7414 98 . N A 555.162 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=18;CIGAR=1X;DP=18;DPB=18;DPRA=0;EPP=42.0968;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=596;QR=0;RO=0;RPL=18;RPP=42.0968;RPPR=0;RPR=0;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:5:0,5:0:0:5:174:-16.002,-1.50515,0 1/1:7:0,7:0:0:7:242:-22.1177,-2.10721,0 1/1:3:0,3:0:0:3:104:-9.70309,-0.90309,0 1/1:3:0,3:0:0:3:76:-7.09104,-0.90309,0 dDocent_Contig_7415 71 . C T 76.7071 . AB=0.130435;ABP=84.8654;AC=1;AF=0.125;AN=8;AO=10;CIGAR=1X;DP=163;DPB=163;DPRA=1.14474;EPP=24.725;EPPR=335.246;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=365;QR=5576;RO=153;RPL=10;RPP=24.725;RPPR=335.246;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=153;SRP=335.246;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:71:71,0:71:2602:0:0:0,-21.3731,-234.416 0/1:69:60,9:60:2185:9:331:-9.36964,0,-176.134 0/0:18:17,1:17:606:1:34:0,-2.01963,-51.4687 0/0:5:5,0:5:183:0:0:0,-1.50515,-16.8268 dDocent_Contig_7416 121 . C A 123.766 . AB=0.164179;ABP=68.6406;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=75;DPB=75;DPRA=4.1875;EPP=26.8965;EPPR=141.985;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=393;QR=2344;RO=64;RPL=0;RPP=26.8965;RPPR=141.985;RPR=11;RUN=1;SAF=0;SAP=26.8965;SAR=11;SRF=0;SRP=141.985;SRR=64;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:42:36,6:36:1303:6:213:-6.87316,0,-104.927 0/1:25:20,5:20:762:5:180:-9.02631,0,-61.3799 ./.:.:.:.:.:.:.:. 0/0:8:8,0:8:279:0:0:0,-2.40824,-25.4456 dDocent_Contig_7418 7 . T A 224.189 . AB=0.229167;ABP=33.5919;AC=1;AF=0.125;AN=8;AO=11;CIGAR=1X;DP=127;DPB=127;DPRA=1.82278;EPP=26.8965;EPPR=252.73;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=420;QR=4398;RO=115;RPL=0;RPP=26.8965;RPPR=252.73;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=115;SRP=252.73;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:48:36,11:36:1379:11:420:-23.8168,0,-110.068 0/0:58:58,0:58:2214:0:0:0,-17.4597,-199.482 0/0:16:16,0:16:612:0:0:0,-4.81648,-55.4187 0/0:5:5,0:5:193:0:0:0,-1.50515,-17.7414 dDocent_Contig_7419 25 . A G 2149.21 . AB=0.338384;ABP=47.9313;AC=3;AF=0.375;AN=8;AO=67;CIGAR=1M1I1M1X2M;DP=198;DPB=246.8;DPRA=0;EPP=148.499;EPPR=217.986;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.970149;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2596;QR=3891;RO=99;RPL=0;RPP=148.499;RPPR=217.986;RPR=67;RUN=1;SAF=67;SAP=148.499;SAR=0;SRF=99;SRP=217.986;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:67:17,37,10:17:678:37,10:1450,360:-114.13,0,-44.7168,-89.9861,-26.5995,-142.814 0|0:50:35,1,14:35:1340:1,14:32,508:-30.8571,-38.8176,-148.476,0,-107.429,-105.791 0|1:58:43,12,3:43:1711:12,3:464,109:-25.1853,0,-137.298,-29.2596,-132.038,-169.243 0|1:23:4,17,2:4:162:17,2:650,72:-52.1462,0,-8.27122,-47.4947,-7.54589,-60.2552 dDocent_Contig_7420 63 . C G 4110.97 . AB=0.635945;ABP=37.8439;AC=4;AF=0.5;AN=8;AO=138;CIGAR=1X;DP=217;DPB=217;DPRA=0;EPP=302.673;EPPR=174.557;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5364;QR=3141;RO=79;RPL=138;RPP=302.673;RPPR=174.557;RPR=0;RUN=1;SAF=138;SAP=302.673;SAR=0;SRF=79;SRP=174.557;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:88:38,50:38:1513:50:1932:-147.592,0,-109.921 0/1:86:26,60:26:1049:60:2335:-184.435,0,-68.8088 0/1:29:13,16:13:497:16:614:-46.8596,0,-36.334 0/1:14:2,12:2:82:12:483:-39.6063,0,-3.56526 dDocent_Contig_7421 10 . T A 71.3449 . AB=0.121622;ABP=95.0338;AC=2;AF=0.25;AN=8;AO=12;CIGAR=1X;DP=133;DPB=133;DPRA=2.27451;EPP=29.068;EPPR=265.758;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.966942;PAO=0;PQA=0;PQR=0;PRO=0;QA=465;QR=4724;RO=121;RPL=0;RPP=29.068;RPPR=265.758;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=121;SRP=265.758;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:42:39,3:39:1543:3:109:0,-2.47795,-128.956 0/1:62:56,6:56:2173:6:237:-3.03981,0,-177.097 0/0:17:17,0:17:654:0:0:0,-5.11751,-59.1873 0/1:12:9,3:9:354:3:119:-7.48282,0,-28.6077 dDocent_Contig_7422 45 . C T 355.128 . AB=0.333333;ABP=13.1438;AC=3;AF=0.375;AN=8;AO=14;CIGAR=1X;DP=55;DPB=55;DPRA=1.07692;EPP=33.4109;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=562;QR=1582;RO=41;RPL=0;RPP=33.4109;RPPR=92.0407;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:13:13,0:13:503:0:0:0,-3.91339,-45.6083 0/1:9:2,7:2:82:7:279:-22.7722,0,-5.07041 0/1:20:14,6:14:547:6:242:-16.1367,0,-43.5475 0/1:13:12,1:12:450:1:41:-0.181177,0,-36.9198 dDocent_Contig_7423 9 . T G 30.2752 . AB=0.3;ABP=6.48466;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X3M1X2M1D2M1X;DP=62;DPB=61.7273;DPRA=0.576923;EPP=9.52472;EPPR=131.127;GTI=0;LEN=1;MEANALT=1;MQM=28;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=116;QR=2305;RO=59;RPL=0;RPP=9.52472;RPPR=131.127;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=59;SRP=131.127;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:23:23,0:23:900:0:0:0,-6.92369,-81.3135 0|0:25:25,0:25:977:0:0:0,-7.52575,-88.2364 0|1:10:7,3:7:274:3:116:-4.72601,0,-22.0177 0|0:4:4,0:4:154:0:0:0,-1.20412,-14.2331 dDocent_Contig_7424 181 . A T 2009.01 . AB=0.62037;ABP=16.6021;AC=4;AF=0.5;AN=8;AO=67;CIGAR=1X;DP=108;DPB=108;DPRA=0;EPP=148.499;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2661;QR=1631;RO=41;RPL=67;RPP=148.499;RPPR=92.0407;RPR=0;RUN=1;SAF=0;SAP=148.499;SAR=67;SRF=0;SRP=92.0407;SRR=41;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:19,17:19:765:17:687:-51.3224,0,-58.3336 0/1:38:10,28:10:382:28:1106:-88.3845,0,-23.288 0/1:23:4,19:4:162:19:747:-60.623,0,-8.04306 0/1:11:8,3:8:322:3:121:-7.96887,0,-26.0368 dDocent_Contig_7425 36 . A C 1839.07 . AB=0.311111;ABP=30.9017;AC=1;AF=0.125;AN=8;AO=28;CIGAR=2X;DP=120;DPB=120;DPRA=0;EPP=63.8115;EPPR=92.0407;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1094;QR=1593;RO=41;RPL=0;RPP=63.8115;RPPR=92.0407;RPR=28;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:43:10,21,12:10:379:21,12:820,480:-72.8693,-8.48607,-33.2285,-36.3374,0,-63.7949 0|0:47:16,7,24:16:628:7,24:274,956:-73.9101,-56.1995,-105.738,0,-29.1206,-44.4242 0|0:22:13,0,9:13:506:0,9:0,344:-24.6858,-28.5992,-70.1867,0,-41.9722,-39.2629 0|0:8:2,0,6:2:80:0,6:0,243:-19.8394,-20.4414,-27.0303,0,-6.98973,-5.18355 dDocent_Contig_7426 19 . T A 102.796 . AB=0.135802;ABP=96.33;AC=1;AF=0.125;AN=8;AO=13;CIGAR=1X;DP=154;DPB=154;DPRA=5.69565;EPP=31.2394;EPPR=309.188;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=475;QR=5258;RO=141;RPL=0;RPP=31.2394;RPPR=309.188;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=141;SRP=309.188;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:81:70,11:70:2646:11:397:-11.6776,0,-213.949 0/0:50:48,2:48:1774:2:78:0,-7.6482,-152.511 0/0:16:16,0:16:611:0:0:0,-4.81648,-55.3267 0/0:7:7,0:7:227:0:0:0,-2.10721,-20.7413 dDocent_Contig_7427 18 . T A 183.341 . AB=0.368421;ABP=5.8675;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=43;DPB=43;DPRA=2.375;EPP=18.2106;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=0.857143;PAIREDR=0.888889;PAO=0;PQA=0;PQR=0;PRO=0;QA=282;QR=1441;RO=36;RPL=0;RPP=18.2106;RPPR=81.1833;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:12:12,0:12:483:0:0:0,-3.61236,-43.819 0/1:19:12,7:12:483:7:282:-20.033,0,-38.0997 0/0:6:6,0:6:237:0:0:0,-1.80618,-21.7003 0/0:6:6,0:6:238:0:0:0,-1.80618,-21.7932 dDocent_Contig_7428 169 . T A 700.253 . AB=0;ABP=0;AC=2;AF=0.25;AN=8;AO=3;CIGAR=12M6I11M1X15M;DP=79;DPB=74.6667;DPRA=0.272727;EPP=9.52472;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=29;QR=1606;RO=41;RPL=3;RPP=9.52472;RPPR=92.0407;RPR=0;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=92.0407;SRR=41;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:3:0,3,0,0:0:0:3,0,0:29,0,0:-2.70665,-0.90309,0,-2.70665,-0.90309,-2.70665,-2.70665,-0.90309,-2.70665,-2.70665 0|0:11:11,0,0,0:11:438:0,0,0:0,0,0:0,-3.31133,-39.7764,-3.31133,-39.7764,-39.7764,-3.31133,-39.7764,-39.7764,-39.7764 0|0:40:16,0,16,6:16:634:0,16,6:0,584,232:-42.8754,-47.6919,-99.8873,0,-52.1938,-47.3773,-28.6321,-80.8317,-33.1409,-79.0255 0|0:25:14,0,10,0:14:534:0,10,0:0,387,0:-27.8401,-32.0545,-75.8693,0,-44.0744,-41.0641,-32.0545,-75.8693,-44.0744,-75.8693 dDocent_Contig_7429 16 . T C 412.032 . AB=0.194915;ABP=98.4079;AC=4;AF=0.5;AN=8;AO=23;CIGAR=1X;DP=118;DPB=118;DPRA=0;EPP=52.9542;EPPR=209.3;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.913043;PAIREDR=0.989474;PAO=0;PQA=0;PQR=0;PRO=0;QA=918;QR=3760;RO=95;RPL=0;RPP=52.9542;RPPR=209.3;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=95;SRP=209.3;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:51:42,9:42:1661:9:368:-18.1328,0,-134.365 0/1:39:31,8:31:1220:8:309:-16.4243,0,-98.3307 0/1:14:12,2:12:477:2:81:-3.47131,0,-39.0649 0/1:14:10,4:10:402:4:160:-10.569,0,-32.3251 dDocent_Contig_7430 32 . G A 288.054 . AB=0.241935;ABP=38.8746;AC=4;AF=0.5;AN=8;AO=15;CIGAR=1X;DP=62;DPB=62;DPRA=0;EPP=35.5824;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=576;QR=1884;RO=47;RPL=0;RPP=35.5824;RPPR=105.07;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:3,8:3:111:8:292:-23.3084,0,-7.04097 0/1:22:20,2:20:799:2:82:-1.15702,0,-65.6068 0/1:20:16,4:16:649:4:161:-8.85488,0,-52.7229 0/1:9:8,1:8:325:1:41:-1.3853,0,-26.9104 dDocent_Contig_7431 88 . A G 35.3759 . AB=0.176471;ABP=18.4661;AC=1;AF=0.125;AN=8;AO=3;CIGAR=2X1M2X;DP=42;DPB=42;DPRA=2.04;EPP=9.52472;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=111;QR=1221;RO=38;RPL=3;RPP=9.52472;RPPR=85.5263;RPR=0;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:8:7,0:7:224:0:0:0,-2.10721,-20.3035 0|0:10:10,0:10:330:0:0:0,-3.0103,-30.0208 0|0:7:7,0:7:220:0:0:0,-2.10721,-20.108 0|1:17:14,3:14:447:3:111:-5.23641,0,-35.4211 dDocent_Contig_7432 139 . T C 32.0349 . AB=0.138889;ABP=43.7857;AC=2;AF=0.25;AN=8;AO=5;CIGAR=1X;DP=61;DPB=61;DPRA=1.44;EPP=3.44459;EPPR=10.6105;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.553571;PAO=0;PQA=0;PQR=0;PRO=0;QA=170;QR=1989;RO=56;RPL=0;RPP=13.8677;RPPR=124.613;RPR=5;RUN=1;SAF=2;SAP=3.44459;SAR=3;SRF=21;SRP=10.6105;SRR=35;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:11,0:11:407:0:0:0,-3.31133,-36.969 0/1:25:23,2:23:806:2:82:-0.253928,0,-65.3169 0/1:11:8,3:8:270:3:88:-4.90024,0,-21.3176 0/0:14:14,0:14:506:0:0:0,-4.21442,-45.8684 dDocent_Contig_7433 37 . A G 124.397 . AB=0.144737;ABP=86.3263;AC=2;AF=0.25;AN=8;AO=11;CIGAR=1X;DP=94;DPB=94;DPRA=4.22222;EPP=26.8965;EPPR=183.243;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=422;QR=3183;RO=83;RPL=0;RPP=26.8965;RPPR=183.243;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=83;SRP=183.243;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:47:40,7:40:1546:7:260:-9.60051,0,-125.228 0/1:29:25,4:25:985:4:162:-6.23709,0,-80.2179 0/0:12:12,0:12:455:0:0:0,-3.61236,-41.2879 0/0:6:6,0:6:197:0:0:0,-1.80618,-18.0426 dDocent_Contig_7434 8 . G T 433.915 . AB=0.233333;ABP=58.6;AC=2;AF=0.25;AN=8;AO=21;CIGAR=1X;DP=133;DPB=133;DPRA=2.09302;EPP=48.6112;EPPR=246.215;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.794643;PAO=0;PQA=0;PQR=0;PRO=0;QA=813;QR=4253;RO=112;RPL=0;RPP=48.6112;RPPR=246.215;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=112;SRP=246.215;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:25:25,0:25:948:0:0:0,-7.52575,-85.629 0/0:18:18,0:18:683:0:0:0,-5.41854,-61.8 0/1:64:57,7:57:2157:7:271:-5.49039,0,-175.089 0/1:26:12,14:12:465:14:542:-41.299,0,-34.3751 dDocent_Contig_7435 16 . A C 939.462 . AB=0.375;ABP=16.0391;AC=4;AF=0.5;AN=8;AO=36;CIGAR=1X;DP=96;DPB=96;DPRA=0;EPP=81.1833;EPPR=133.299;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1431;QR=2412;RO=60;RPL=0;RPP=81.1833;RPPR=133.299;RPR=36;RUN=1;SAF=36;SAP=81.1833;SAR=0;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:20,8:20:812:8:313:-20.1044,0,-64.9663 0/1:15:7,8:7:281:8:322:-24.8329,0,-21.1462 0/1:41:24,17:24:958:17:674:-48.6467,0,-74.1743 0/1:12:9,3:9:361:3:122:-7.76013,0,-29.2406 dDocent_Contig_7436 136 . T A 959.329 . AB=0.378641;ABP=16.1867;AC=4;AF=0.5;AN=8;AO=39;CIGAR=1X;DP=103;DPB=103;DPRA=0;EPP=87.6977;EPPR=141.985;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.820513;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1477;QR=2436;RO=64;RPL=0;RPP=87.6977;RPPR=141.985;RPR=39;RUN=1;SAF=0;SAP=87.6977;SAR=39;SRF=0;SRP=141.985;SRR=64;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:10,17:10:389:17:658:-51.429,0,-27.2406 0/1:16:9,7:9:344:7:264:-19.3031,0,-26.5009 0/1:38:29,9:29:1102:9:327:-18.3371,0,-88.0442 0/1:22:16,6:16:601:6:228:-14.2616,0,-47.8021 dDocent_Contig_7437 1 . N G 95.1284 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=102;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:102:-9.5123,-0.90309,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_7438 12 . C G 152.363 . AB=0.28;ABP=13.5202;AC=2;AF=0.25;AN=8;AO=7;CIGAR=1X;DP=38;DPB=38;DPRA=1.92308;EPP=18.2106;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=0.870968;PAO=0;PQA=0;PQR=0;PRO=0;QA=282;QR=1242;RO=31;RPL=0;RPP=18.2106;RPPR=70.3259;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:8:8,0:8:323:0:0:0,-2.40824,-29.4381 0/1:13:8,5:8:324:5:200:-14.4662,0,-25.6154 0/1:12:10,2:10:397:2:82:-4.16732,0,-32.4759 0/0:5:5,0:5:198:0:0:0,-1.50515,-18.1974 dDocent_Contig_7439 8 . G C 1649.21 . AB=0.0538922;ABP=291.686;AC=4;AF=0.5;AN=8;AO=9;CIGAR=1X3M;DP=230;DPB=230;DPRA=0;EPP=22.5536;EPPR=304.845;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=0.992806;PAO=0;PQA=0;PQR=0;PRO=0;QA=351;QR=5230;RO=139;RPL=0;RPP=22.5536;RPPR=304.845;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=139;SRP=304.845;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:76:39,25,11,1:39:1461:25,11,1:969,432,39:-67.8606,0,-112.117,-44.0672,-84.1064,-160.404,-76.3949,-116.436,-160.509,-195.742 0|1:63:35,24,4,0:35:1320:24,4,0:928,154,0:-65.6892,0,-100.947,-63.581,-95.5266,-170.55,-76.2253,-108.172,-171.754,-184.399 0|1:64:45,14,0,5:45:1696:14,0,5:550,0,195:-31.6943,0,-134.756,-45.2407,-138.971,-184.212,-29.2121,-122.94,-168.182,-166.677 0|1:27:20,4,0,3:20:753:4,0,3:159,0,117:-7.07477,0,-60.4862,-13.0954,-61.6903,-74.7843,-3.48092,-52.071,-65.1656,-64.2625 dDocent_Contig_7440 54 . T C 728.699 . AB=0.269504;ABP=68.0775;AC=3;AF=0.375;AN=8;AO=38;CIGAR=1X;DP=198;DPB=198;DPRA=0.824561;EPP=85.5263;EPPR=348.274;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1330;QR=5656;RO=159;RPL=0;RPP=85.5263;RPPR=348.274;RPR=38;RUN=1;SAF=0;SAP=85.5263;SAR=38;SRF=0;SRP=348.274;SRR=159;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:53:40,13:40:1404:13:468:-26.5047,0,-110.697 0/0:57:56,0:56:2018:0:0:0,-16.8577,-181.811 0/1:58:37,21:37:1310:21:716:-47.2959,0,-100.738 0/1:30:26,4:26:924:4:146:-4.46689,0,-74.4414 dDocent_Contig_7441 16 . C G 36.7257 . AB=0.25;ABP=7.35324;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X;DP=36;DPB=36;DPRA=0.857143;EPP=7.35324;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=1333;RO=34;RPL=0;RPP=7.35324;RPPR=76.8404;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:13:13,0:13:514:0:0:0,-3.91339,-46.6056 0/1:8:6,2:6:220:2:82:-5.37144,0,-17.7409 0/0:8:8,0:8:325:0:0:0,-2.40824,-29.6194 0/0:7:7,0:7:274:0:0:0,-2.10721,-25.0249 dDocent_Contig_7442 23 . C A 750.107 . AB=0.581395;ABP=5.48477;AC=1;AF=0.166667;AN=6;AO=25;CIGAR=1X;DP=108;DPB=108;DPRA=1.32308;EPP=57.2971;EPPR=183.243;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=991;QR=3351;RO=83;RPL=0;RPP=57.2971;RPPR=183.243;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=83;SRP=183.243;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 0/1:43:18,25:18:736:25:991:-76.5336,0,-53.6179 0/0:43:43,0:43:1733:0:0:0,-12.9443,-156.188 0/0:22:22,0:22:882:0:0:0,-6.62266,-79.6888 dDocent_Contig_7443 8 . G T 432.672 . AB=0.0927419;ABP=360.288;AC=4;AF=0.5;AN=8;AO=23;CIGAR=1X4M;DP=248;DPB=248;DPRA=0;EPP=52.9542;EPPR=411.247;GTI=0;LEN=1;MEANALT=2.25;MQM=54.913;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.478261;PAIREDR=0.957447;PAO=0;PQA=0;PQR=0;PRO=0;QA=842;QR=7169;RO=188;RPL=0;RPP=52.9542;RPPR=411.247;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=188;SRP=411.247;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:62:40,20,2:40:1525:20,2:789,78:-23.4664,0,-119.072,-29.0814,-118.681,-153.68 0|1:82:70,1,10:70:2673:1,10:40,336:-5.34657,-24.8449,-243.896,0,-217.804,-216.375 0|1:60:49,4,7:49:1855:4,7:158,273:-7.79459,-15.6595,-166.519,0,-145.281,-150.107 0|1:44:29,11,4:29:1116:11,4:431,155:-14.0575,0,-88.315,-10.0206,-78.8919,-100.532 dDocent_Contig_7444 29 . G C 365.383 . AB=0.225;ABP=55.5599;AC=3;AF=0.375;AN=8;AO=18;CIGAR=1X;DP=81;DPB=81;DPRA=26.6667;EPP=42.0968;EPPR=139.813;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=721;QR=2467;RO=63;RPL=0;RPP=42.0968;RPPR=139.813;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=63;SRP=139.813;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:37:30,7:30:1159:7:272:-13.7059,0,-93.4399 0/1:25:21,4:21:831:4:164:-7.62415,0,-67.5746 0/1:18:11,7:11:437:7:285:-20.6057,0,-34.2661 0/0:1:1,0:1:40:0:0:0,-0.30103,-3.99568 dDocent_Contig_7446 1 . N G 173.897 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=5;CIGAR=1X;DP=5;DPB=5;DPRA=0;EPP=13.8677;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=0.8;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=176;QR=0;RO=0;RPL=0;RPP=13.8677;RPPR=0;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:1:0,1:0:0:1:41:-4.09457,-0.30103,0 1/1:2:0,2:0:0:2:69:-6.55189,-0.60206,0 1/1:2:0,2:0:0:2:66:-6.26471,-0.60206,0 dDocent_Contig_7447 11 . C T 97.969 . AB=0.181818;ABP=32.0291;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=118;DPB=118;DPRA=1.16471;EPP=16.0391;EPPR=246.215;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=234;QR=4500;RO=112;RPL=0;RPP=16.0391;RPPR=246.215;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=112;SRP=246.215;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:55:55,0:55:2205:0:0:0,-16.5566,-198.622 0/1:33:27,6:27:1090:6:234:-11.4959,0,-88.453 0/0:13:13,0:13:519:0:0:0,-3.91339,-47.0547 0/0:17:17,0:17:686:0:0:0,-5.11751,-62.0693 dDocent_Contig_7448 27 . G A 227.649 . AB=0.13245;ABP=180.194;AC=2;AF=0.25;AN=8;AO=20;CIGAR=1X;DP=256;DPB=256;DPRA=1.4381;EPP=46.4397;EPPR=515.478;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=788;QR=9391;RO=236;RPL=0;RPP=46.4397;RPPR=515.478;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=236;SRP=515.478;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:107:93,14:93:3681:14:563:-18.8009,0,-299.103 0/0:73:73,0:73:2905:0:0:0,-21.9752,-261.549 0/1:44:38,6:38:1526:6:225:-7.36197,0,-124.336 0/0:32:32,0:32:1279:0:0:0,-9.63296,-115.376 dDocent_Contig_7450 28 . A T 444.642 . AB=0.246154;ABP=39.3908;AC=3;AF=0.375;AN=8;AO=17;CIGAR=1X3M1X1M6I2M2X;DP=98;DPB=112.4;DPRA=0;EPP=39.9253;EPPR=161.528;GTI=0;LEN=1;MEANALT=1.75;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.972603;PAO=0;PQA=0;PQR=0;PRO=0;QA=669;QR=2856;RO=73;RPL=0;RPP=39.9253;RPPR=161.528;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=73;SRP=161.528;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:33:32,0,1:32:1259:0,1:0,39:0,-9.63296,-113.199,-6.03743,-109.993,-109.692 0|1:31:23,0,8:23:891:0,8:0,319:-19.7461,-26.6698,-99.8512,0,-73.5768,-71.1686 0|1:19:8,3,7:8:315:3,7:119,272:-19.9381,-12.5482,-37.5619,0,-16.1166,-23.8063 0|1:15:10,4,1:10:391:4,1:160,39:-10.178,0,-30.9439,-9.98436,-28.9422,-41.8241 dDocent_Contig_7451 11 . G A 392.728 . AB=0.314286;ABP=13.4954;AC=2;AF=0.25;AN=8;AO=11;CIGAR=1X2M2X1M2D1M;DP=114;DPB=111.556;DPRA=0.443038;EPP=26.8965;EPPR=178.9;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=419;QR=3075;RO=81;RPL=0;RPP=26.8965;RPPR=178.9;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=81;SRP=178.9;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:57:46,0,0,6,4:46:1755:0,0,6,4:0,0,192,155:0,-13.8474,-157.86,-13.8474,-157.86,-157.86,-0.052786,-144.021,-144.021,-142.215,-1.08356,-145.125,-145.125,-131.287,-143.921 0|0:22:21,0,0,0,0:21:799:0,0,0,0:0,0,0,0:0,-6.32163,-71.8824,-6.32163,-71.8824,-71.8824,-6.32163,-71.8824,-71.8824,-71.8824,-6.32163,-71.8824,-71.8824,-71.8824,-71.8824 0|1:23:10,0,9,4,0:10:372:0,9,4,0:0,346,127,0:-25.4624,-28.4727,-58.9258,0,-30.5058,-27.7966,-19.3597,-49.7988,-21.3872,-48.5947,-28.4727,-58.9258,-30.5058,-49.7988,-58.9258 0|1:12:4,6,2,0,0:4:149:6,2,0,0:231,73,0,0:-17.2073,0,-10.3956,-12.4495,-6.24006,-24.0435,-18.4114,-12.2018,-24.6456,-30.6084,-18.4114,-12.2018,-24.6456,-30.6084,-30.6084 dDocent_Contig_7452 83 . T G 70.4163 . AB=0.333333;ABP=5.9056;AC=2;AF=0.25;AN=8;AO=4;CIGAR=1X;DP=28;DPB=28;DPRA=0.75;EPP=11.6962;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.5;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=148;QR=865;RO=24;RPL=4;RPP=11.6962;RPPR=55.1256;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:5:3,2:3:111:2:74:-5.52073,0,-8.84877 0/0:10:10,0:10:359:0:0:0,-3.0103,-32.6517 0/1:7:5,2:5:185:2:74:-4.91867,0,-14.9028 0/0:6:6,0:6:210:0:0:0,-1.80618,-19.2425 dDocent_Contig_7453 134 . T C 53.4876 . AB=0.3125;ABP=7.89611;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=53;DPB=53;DPRA=1.2973;EPP=13.8677;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=129;QR=1624;RO=48;RPL=0;RPP=13.8677;RPPR=107.241;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=107.241;SRR=48;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:10:10,0:10:334:0:0:0,-3.0103,-30.3846 0/1:16:11,5:11:370:5:129:-7.04771,0,-28.8084 0/0:21:21,0:21:718:0:0:0,-6.32163,-64.9388 0/0:6:6,0:6:202:0:0:0,-1.80618,-18.5106 dDocent_Contig_7454 209 . N G 200.699 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=6;CIGAR=1X;DP=6;DPB=6;DPRA=0;EPP=16.0391;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=212;QR=0;RO=0;RPL=6;RPP=16.0391;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:118:-11.0016,-0.90309,0 1/1:3:0,3:0:0:3:94:-8.76674,-0.90309,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_7455 116 . G A 163.679 . AB=0.196429;ABP=47.8357;AC=1;AF=0.125;AN=8;AO=11;CIGAR=2X;DP=131;DPB=131;DPRA=2.24;EPP=26.8965;EPPR=261.416;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=381;QR=4106;RO=119;RPL=0;RPP=26.8965;RPPR=261.416;RPR=11;RUN=1;SAF=0;SAP=26.8965;SAR=11;SRF=0;SRP=261.416;SRR=119;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:56:45,11:45:1566:11:381:-17.7659,0,-124.377 0|0:34:33,0:33:1138:0:0:0,-9.93399,-102.601 0|0:34:34,0:34:1157:0:0:0,-10.235,-104.433 0|0:7:7,0:7:245:0:0:0,-2.10721,-22.3912 dDocent_Contig_7456 30 . A T 1438.73 . AB=0.461538;ABP=3.84548;AC=5;AF=0.625;AN=8;AO=49;CIGAR=1X2M1X2M1X;DP=85;DPB=85;DPRA=0;EPP=109.412;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.877551;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1904;QR=1343;RO=35;RPL=0;RPP=109.412;RPPR=79.0118;RPR=49;RUN=1;SAF=49;SAP=109.412;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:20:1,19:1:38:19:748:-63.8495,-2.22333,0 0|1:22:17,5:17:638:5:190:-10.8418,0,-51.1193 0|1:31:12,18:12:470:18:691:-53.0737,0,-33.2101 0|1:12:5,7:5:197:7:275:-21.5064,0,-14.4937 dDocent_Contig_7457 40 . C T 2475.83 . AB=0.0508475;ABP=106.394;AC=0;AF=0;AN=8;AO=3;CIGAR=1X1M1X;DP=113;DPB=113;DPRA=0;EPP=9.52472;EPPR=65.983;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.333333;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=123;QR=1152;RO=29;RPL=0;RPP=9.52472;RPPR=65.983;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:50:6,0,43:6:235:0,43:0,1719:-139.884,-141.69,-161.013,0,-19.4101,-6.46581 0|0:38:12,1,25:12:477:1,25:41,998:-78.5692,-78.7971,-117.767,0,-35.8746,-31.7339 0|0:21:9,2,10:9:361:2,10:82,398:-30.0462,-25.9853,-55.1289,0,-22.9672,-26.7267 0|0:4:2,0,2:2:79:0,2:0,81:-6.48161,-7.08367,-13.5797,0,-6.89557,-6.29351 dDocent_Contig_7458 8 . G A 30.0766 . AB=0.106061;ABP=91.9749;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=188;DPB=188;DPRA=5.71429;EPP=20.3821;EPPR=393.875;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=307;QR=6844;RO=180;RPL=0;RPP=20.3821;RPPR=393.875;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=180;SRP=393.875;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:94:93,1:93:3529:1:38:0,-24.4995,-313.942 0/1:66:59,7:59:2242:7:269:-4.70621,0,-182.136 0/0:15:15,0:15:572:0:0:0,-4.51545,-51.8199 0/0:13:13,0:13:501:0:0:0,-3.91339,-45.438 dDocent_Contig_7459 112 . G C 931.701 . AB=0.622951;ABP=11.0198;AC=2;AF=0.25;AN=8;AO=38;CIGAR=1X;DP=80;DPB=80;DPRA=3.21053;EPP=85.5263;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1270;QR=1426;RO=42;RPL=0;RPP=85.5263;RPPR=94.2121;RPR=38;RUN=1;SAF=0;SAP=85.5263;SAR=38;SRF=0;SRP=94.2121;SRR=42;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:8:8,0:8:273:0:0:0,-2.40824,-24.9026 0/1:41:16,25:16:544:25:838:-63.3887,0,-36.941 0/0:11:11,0:11:378:0:0:0,-3.31133,-34.3515 0/1:20:7,13:7:231:13:432:-33.1793,0,-15.0935 dDocent_Contig_7460 34 . T A 2335.62 . AB=0.586466;ABP=11.6472;AC=4;AF=0.5;AN=8;AO=78;CIGAR=1X;DP=133;DPB=133;DPRA=0;EPP=172.385;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3108;QR=2201;RO=55;RPL=0;RPP=172.385;RPPR=122.441;RPR=78;RUN=1;SAF=78;SAP=172.385;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:45:15,30:15:593:30:1194:-94.1949,0,-40.1593 0/1:35:15,20:15:612:20:796:-61.4155,0,-44.8811 0/1:37:18,19:18:711:19:760:-57.5847,0,-53.1745 0/1:16:7,9:7:285:9:358:-27.7652,0,-21.2079 dDocent_Contig_7461 30 . A G 51.8139 . AB=0.214286;ABP=12.937;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=41;DPB=41;DPRA=1.55556;EPP=9.52472;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=119;QR=1440;RO=38;RPL=0;RPP=9.52472;RPPR=85.5263;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:18:18,0:18:666:0:0:0,-5.41854,-60.2464 0/0:2:2,0:2:81:0:0:0,-0.60206,-7.68573 0/1:14:11,3:11:425:3:119:-6.88008,0,-34.3822 0/0:7:7,0:7:268:0:0:0,-2.10721,-24.4786 dDocent_Contig_7462 8 . G A 1666.87 . AB=0.461538;ABP=4.68066;AC=2;AF=0.25;AN=8;AO=60;CIGAR=1X;DP=176;DPB=176;DPRA=2.82609;EPP=133.299;EPPR=254.901;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2318;QR=4385;RO=116;RPL=0;RPP=133.299;RPPR=254.901;RPR=60;RUN=1;SAF=60;SAP=133.299;SAR=0;SRF=116;SRP=254.901;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:65:42,23:42:1586:23:886:-60.4934,0,-123.445 0/1:65:28,37:28:1053:37:1432:-109.592,0,-75.5088 0/0:27:27,0:27:1025:0:0:0,-8.12781,-92.556 0/0:19:19,0:19:721:0:0:0,-5.71957,-65.2157 dDocent_Contig_7465 29 . G C 100.864 . AB=0.145833;ABP=55.3066;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=158;DPB=158;DPRA=2.03846;EPP=20.3821;EPPR=328.731;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.9;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.986667;PAO=0;PQA=0;PQR=0;PRO=0;QA=314;QR=5883;RO=150;RPL=0;RPP=20.3821;RPPR=328.731;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=150;SRP=328.731;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:48:41,7:41:1610:7:284:-11.4843,0,-130.663 0/0:32:32,0:32:1261:0:0:0,-9.63296,-113.767 0/0:58:57,1:57:2215:1:30:0,-14.4602,-196.529 0/0:20:20,0:20:797:0:0:0,-6.0206,-72.0486 dDocent_Contig_7467 209 . N G 65.5337 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=69;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:69:-6.55228,-0.60206,0 dDocent_Contig_7468 97 . C T 42.5733 . AB=0.185185;ABP=26.2531;AC=2;AF=0.25;AN=8;AO=6;CIGAR=1X;DP=70;DPB=70;DPRA=0.638889;EPP=16.0391;EPPR=141.985;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=203;QR=2126;RO=64;RPL=6;RPP=16.0391;RPPR=141.985;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=64;SRP=141.985;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:17,3:17:581:3:105:-3.77556,0,-46.5922 0/0:19:18,1:18:596:1:35:0,-2.22094,-50.4535 0/0:24:24,0:24:786:0:0:0,-7.22472,-71.045 0/1:7:5,2:5:163:2:63:-3.87643,0,-12.8841 dDocent_Contig_7469 15 . G T 92.6312 . AB=0.307692;ABP=7.18621;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=98;DPB=98;DPRA=0.458824;EPP=11.6962;EPPR=207.129;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=161;QR=3691;RO=94;RPL=0;RPP=11.6962;RPPR=207.129;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=94;SRP=207.129;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:44:44,0:44:1752:0:0:0,-13.2453,-157.894 0/0:21:21,0:21:822:0:0:0,-6.32163,-74.2908 0/0:20:20,0:20:762:0:0:0,-6.0206,-68.8871 0/1:13:9,4:9:355:4:161:-10.9621,0,-28.3959 dDocent_Contig_7470 18 . G C 220.898 . AB=0.122222;ABP=226.141;AC=3;AF=0.375;AN=8;AO=22;CIGAR=1X;DP=197;DPB=197;DPRA=3.52941;EPP=50.7827;EPPR=380.846;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=895;QR=6963;RO=174;RPL=0;RPP=50.7827;RPPR=380.846;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=174;SRP=380.846;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:55:46,9:46:1853:9:368:-16.9287,0,-150.415 0/1:97:88,9:88:3536:9:364:-3.92447,0,-289.053 0/1:28:23,4:23:915:4:163:-6.63324,0,-74.2523 0/0:17:17,0:17:659:0:0:0,-5.11751,-59.6342 dDocent_Contig_7471 12 . C T 54.8228 . AB=0.230769;ABP=11.1951;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=60;DPB=60;DPRA=0.829787;EPP=9.52472;EPPR=126.784;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=119;QR=2268;RO=57;RPL=0;RPP=9.52472;RPPR=126.784;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:31:31,0:31:1210:0:0:0,-9.33193,-109.171 0/1:13:10,3:10:406:3:119:-7.18111,0,-32.987 0/0:13:13,0:13:529:0:0:0,-3.91339,-47.9563 0/0:3:3,0:3:123:0:0:0,-0.90309,-11.4648 dDocent_Contig_7472 28 . G T 66.3321 . AB=0.25;ABP=11.6962;AC=1;AF=0.125;AN=8;AO=4;CIGAR=2X;DP=64;DPB=64;DPRA=1;EPP=11.6962;EPPR=133.299;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.5;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=139;QR=2334;RO=60;RPL=0;RPP=11.6962;RPPR=133.299;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:16:12,4:12:474:4:139:-8.03114,0,-38.1956 0|0:7:7,0:7:274:0:0:0,-2.10721,-25.0278 0|0:24:24,0:24:929:0:0:0,-7.22472,-83.9214 0|0:17:17,0:17:657:0:0:0,-5.11751,-59.4638 dDocent_Contig_7473 24 . G A 701.08 . AB=0.193069;ABP=168.3;AC=4;AF=0.5;AN=8;AO=39;CIGAR=1X;DP=202;DPB=202;DPRA=0;EPP=87.6977;EPPR=356.96;GTI=0;LEN=1;MEANALT=1;MQM=58.4103;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=0.974359;PAIREDR=0.932515;PAO=0;PQA=0;PQR=0;PRO=0;QA=1525;QR=6420;RO=163;RPL=0;RPP=87.6977;RPPR=356.96;RPR=39;RUN=1;SAF=39;SAP=87.6977;SAR=0;SRF=163;SRP=356.96;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:55:47,8:47:1862:8:306:-10.9759,0,-151.224 0/1:68:59,9:59:2309:9:352:-11.5362,0,-187.487 0/1:50:31,19:31:1203:19:749:-52.6676,0,-93.4943 0/1:29:26,3:26:1046:3:118:-2.27171,0,-85.6971 dDocent_Contig_7476 18 . G T 451.102 . AB=0.365385;ABP=11.1951;AC=3;AF=0.375;AN=8;AO=19;CIGAR=1X;DP=59;DPB=59;DPRA=2.47619;EPP=44.2683;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.842105;PAIREDR=0.85;PAO=0;PQA=0;PQR=0;PRO=0;QA=723;QR=1584;RO=40;RPL=0;RPP=44.2683;RPPR=89.8692;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:10,7:10:402:7:268:-19.3662,0,-31.4229 0/1:19:11,8:11:431:8:303:-21.9087,0,-33.4255 0/1:16:12,4:12:473:4:152:-9.23328,0,-38.1055 0/0:7:7,0:7:278:0:0:0,-2.10721,-25.3905 dDocent_Contig_7477 57 . G T 714.247 . AB=0.454545;ABP=3.99733;AC=2;AF=0.333333;AN=6;AO=26;CIGAR=1X;DP=69;DPB=69;DPRA=0;EPP=59.4686;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1035;QR=1672;RO=43;RPL=26;RPP=59.4686;RPPR=96.3836;RPR=0;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 0/1:43:24,19:24:926:19:771:-56.7661,0,-70.699 0/0:14:13,1:13:509:1:26:0,-1.61459,-43.5551 0/1:12:6,6:6:237:6:238:-18.1814,0,-18.0903 dDocent_Contig_7478 8 . G A 2361.58 . AB=0.592857;ABP=13.4954;AC=4;AF=0.5;AN=8;AO=83;CIGAR=1X;DP=140;DPB=140;DPRA=0;EPP=183.243;EPPR=126.784;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.975904;PAIREDR=0.964912;PAO=0;PQA=0;PQR=0;PRO=0;QA=3160;QR=2189;RO=57;RPL=0;RPP=183.243;RPPR=126.784;RPR=83;RUN=1;SAF=83;SAP=183.243;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:48:34,14:34:1305:14:534:-33.9529,0,-103.286 0/1:65:14,51:14:537:51:1932:-154.553,0,-29.1079 0/1:13:3,10:3:113:10:388:-31.3646,0,-6.62558 0/1:14:6,8:6:234:8:306:-23.686,0,-17.2167 dDocent_Contig_7479 168 . C T 314.102 . AB=0.4;ABP=5.61607;AC=1;AF=0.125;AN=8;AO=12;CIGAR=1X;DP=80;DPB=80;DPRA=1.8;EPP=29.068;EPPR=150.67;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=58.8529;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=0.970588;PAO=0;PQA=0;PQR=0;PRO=0;QA=461;QR=2635;RO=68;RPL=12;RPP=29.068;RPPR=150.67;RPR=0;RUN=1;SAF=0;SAP=29.068;SAR=12;SRF=0;SRP=150.67;SRR=68;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:18,12:18:713:12:461:-32.808,0,-55.4627 0/0:35:35,0:35:1359:0:0:0,-10.536,-118.959 0/0:11:11,0:11:432:0:0:0,-3.31133,-39.2293 0/0:4:4,0:4:131:0:0:0,-1.20412,-12.1072 dDocent_Contig_7480 29 . G T 877.115 . AB=0.232955;ABP=112.028;AC=4;AF=0.5;AN=8;AO=41;CIGAR=1X;DP=176;DPB=176;DPRA=0;EPP=92.0407;EPPR=296.159;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.780488;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1613;QR=5195;RO=135;RPL=0;RPP=92.0407;RPPR=296.159;RPR=41;RUN=1;SAF=41;SAP=92.0407;SAR=0;SRF=135;SRP=296.159;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:62:49,13:49:1882:13:512:-27.7626,0,-150.92 0/1:61:48,13:48:1823:13:508:-27.7006,0,-145.923 0/1:42:28,14:28:1091:14:555:-37.643,0,-85.8337 0/1:11:10,1:10:399:1:38:-0.485939,0,-32.9577 dDocent_Contig_7481 57 . T C 456.822 . AB=0.282051;ABP=19.1015;AC=5;AF=0.625;AN=8;AO=17;CIGAR=1X;DP=45;DPB=45;DPRA=0;EPP=39.9253;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=681;QR=1120;RO=28;RPL=17;RPP=39.9253;RPPR=63.8115;RPR=0;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:10,4:10:409:4:163:-10.844,0,-32.9562 0/1:14:12,2:12:469:2:73:-2.71668,0,-38.3375 0/1:11:6,5:6:242:5:203:-15.3417,0,-18.8462 1/1:6:0,6:0:0:6:242:-22.1573,-1.80618,0 dDocent_Contig_7482 13 . G A 72.7345 . AB=0.210526;ABP=16.8392;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=94;DPB=94;DPRA=0.76;EPP=11.6962;EPPR=196.271;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=159;QR=3575;RO=89;RPL=0;RPP=11.6962;RPPR=196.271;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=89;SRP=196.271;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:34:34,0:34:1366:0:0:0,-10.235,-123.196 0/0:36:35,0:35:1409:0:0:0,-10.536,-126.654 0/1:19:15,4:15:602:4:159:-8.97238,0,-48.7985 0/0:5:5,0:5:198:0:0:0,-1.50515,-18.1965 dDocent_Contig_7483 111 . C T 1281.46 . AB=0.351852;ABP=33.8935;AC=3;AF=0.375;AN=8;AO=57;CIGAR=1X;DP=166;DPB=166;DPRA=13.5;EPP=126.784;EPPR=239.701;GTI=0;LEN=1;MEANALT=1;MQM=59.4386;MQMR=59.7431;NS=4;NUMALT=1;ODDS=0;PAIRED=0.473684;PAIREDR=0.844037;PAO=0;PQA=0;PQR=0;PRO=0;QA=2015;QR=3685;RO=109;RPL=0;RPP=126.784;RPPR=239.701;RPR=57;RUN=1;SAF=0;SAP=126.784;SAR=57;SRF=0;SRP=239.701;SRR=109;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:63:37,26:37:1268:26:912:-63.429,0,-95.4571 0/1:43:28,15:28:946:15:533:-35.3594,0,-72.4788 0/1:56:40,16:40:1335:16:570:-34.7558,0,-103.586 0/0:4:4,0:4:136:0:0:0,-1.20412,-12.5757 dDocent_Contig_7484 169 . C T 265.992 . AB=0.285714;ABP=19.7617;AC=3;AF=0.375;AN=8;AO=12;CIGAR=1X;DP=59;DPB=59;DPRA=0.823529;EPP=29.068;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.0833333;PAIREDR=0.702128;PAO=0;PQA=0;PQR=0;PRO=0;QA=483;QR=1854;RO=47;RPL=12;RPP=29.068;RPPR=105.07;RPR=0;RUN=1;SAF=0;SAP=29.068;SAR=12;SRF=0;SRP=105.07;SRR=47;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:17:17,0:17:680:0:0:0,-5.11751,-61.531 0/1:2:1,1:1:39:1:41:-3.49251,0,-3.2945 0/1:17:11,6:11:436:6:240:-16.8579,0,-34.4763 0/1:23:18,5:18:699:5:202:-11.6378,0,-56.305 dDocent_Contig_7485 132 . C A 109.145 . AB=0.25;ABP=18.2106;AC=2;AF=0.25;AN=8;AO=7;CIGAR=1X;DP=78;DPB=78;DPRA=0.56;EPP=18.2106;EPPR=157.185;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=245;QR=2442;RO=71;RPL=0;RPP=18.2106;RPPR=157.185;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=157.185;SRR=71;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:11,4:11:377:4:140:-8.42948,0,-29.745 0/0:47:47,0:47:1618:0:0:0,-14.1484,-145.912 0/1:13:10,3:10:348:3:105:-5.88277,0,-27.7426 0/0:3:3,0:3:99:0:0:0,-0.90309,-9.23744 dDocent_Contig_7486 92 . A C 415.694 . AB=0.194805;ABP=127.602;AC=3;AF=0.375;AN=8;AO=31;CIGAR=1X;DP=167;DPB=167;DPRA=0;EPP=70.3259;EPPR=298.331;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.970588;PAO=0;PQA=0;PQR=0;PRO=0;QA=1061;QR=4581;RO=136;RPL=31;RPP=70.3259;RPPR=298.331;RPR=0;RUN=1;SAF=31;SAP=70.3259;SAR=0;SRF=136;SRP=298.331;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:70:57,13:57:1918:13:447:-19.4874,0,-151.824 0/1:48:36,12:36:1223:12:415:-23.2323,0,-95.9212 0/1:36:31,5:31:1042:5:164:-4.24655,0,-83.2483 0/0:13:12,1:12:398:1:35:0,-0.414761,-32.6409 dDocent_Contig_7487 98 . N T 577.472 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=18;CIGAR=1X;DP=18;DPB=18;DPRA=0;EPP=42.0968;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=625;QR=0;RO=0;RPL=18;RPP=42.0968;RPPR=0;RPR=0;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:10:0,10:0:0:10:346:-31.4746,-3.0103,0 1/1:2:0,2:0:0:2:69:-6.55266,-0.60206,0 1/1:6:0,6:0:0:6:210:-19.2425,-1.80618,0 dDocent_Contig_7488 7 . T C 3895.14 . AB=0.0716846;ABP=447.586;AC=4;AF=0.5;AN=8;AO=20;CIGAR=1X2M1X2M1X9M1X;DP=306;DPB=304.941;DPRA=0;EPP=46.4397;EPPR=191.928;GTI=0;LEN=1;MEANALT=7;MQM=60;MQMR=60;NS=4;NUMALT=5;ODDS=5.55112e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=756;QR=3357;RO=87;RPL=0;RPP=46.4397;RPPR=191.928;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=87;SRP=191.928;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:128:48,56,0,9,0,9:48:1842:56,0,9,0,9:2178,0,350,0,355:-164.562,0,-134.363,-179.012,-151.22,-330.209,-150.247,-122.455,-301.445,-298.736,-179.012,-151.22,-330.209,-301.445,-330.209,-149.803,-122.011,-301.001,-272.238,-301.001,-298.292 1|0:100:15,29,0,7,5,38:15:582:29,0,7,5,38:1127,0,264,198,1487:-162.536,-74.4403,-113.531,-167.052,-122.261,-214.872,-145.417,-100.627,-193.237,-191.13,-150.755,-105.964,-198.575,-176.941,-197.07,-44.7954,0,-92.6177,-70.983,-76.3204,-81.1786 0|1:51:15,17,0,4,0,13:15:580:17,0,4,0,13:659,0,142,0,525:-49.6271,0,-42.5249,-54.1425,-47.6424,-101.783,-42.5775,-36.0775,-90.2173,-89.0132,-54.1425,-47.6424,-101.783,-90.2173,-101.783,-10.8517,-4.35019,-58.4971,-46.9312,-58.4971,-54.5837 0|1:27:9,7,3,0,0,6:9:353:7,3,0,0,6:278,117,0,0,243:-20.1867,0,-26.9317,-13.277,-19.42,-41.4087,-22.8959,-29.0389,-42.3118,-51.9299,-22.8959,-29.0389,-42.3118,-51.9299,-51.9299,-2.84787,-8.99207,-22.2681,-31.8873,-31.8873,-30.0811 dDocent_Contig_7490 172 . T A 764.287 . AB=0.0740741;ABP=173.189;AC=1;AF=0.125;AN=8;AO=8;CIGAR=2M1X13M;DP=127;DPB=131;DPRA=1.89474;EPP=20.3821;EPPR=144.156;GTI=0;LEN=1;MEANALT=4.33333;MQM=60;MQMR=60;NS=4;NUMALT=5;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=322;QR=2532;RO=65;RPL=8;RPP=20.3821;RPPR=144.156;RPR=0;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=144.156;SRR=65;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:35:0,5,21,7,0,2:0:0:5,21,7,0,2:164,681,217,0,80:-72.3285,-59.0873,-57.5821,-17.3958,-4.15564,-11.0742,-54.9175,-41.6771,0,-52.8103,-72.3285,-59.0873,-17.3958,-54.9175,-72.3285,-65.7339,-52.4919,-10.7939,-48.322,-65.7339,-65.1318 0|0:36:30,3,0,0,1,2:30:1162:3,0,0,1,2:120,0,0,35,82:-0.858751,0,-94.5481,-9.88965,-95.4512,-105.337,-9.88965,-95.4512,-105.337,-105.337,-7.05086,-92.6047,-102.49,-102.49,-102.189,-3.11405,-88.6816,-98.5675,-98.5675,-95.7209,-97.9655 0|1:37:19,4,3,3,3,4:19:740:4,3,3,3,4:153,114,106,110,160:-7.46602,-0.63106,-60.2504,-3.83646,-52.106,-63.7562,-4.55872,-52.8256,-56.0303,-64.4755,-4.19686,-52.4651,-55.6698,-56.3893,-64.1151,0,-48.2727,-51.4776,-52.1972,-51.8367,-59.6222 0|0:19:16,0,1,0,0,0:16:630:0,1,0,0,0:0,40,0,0,0:0,-4.81648,-56.7343,-1.46486,-53.4379,-53.1369,-4.81648,-56.7343,-53.4379,-56.7343,-4.81648,-56.7343,-53.4379,-56.7343,-56.7343,-4.81648,-56.7343,-53.4379,-56.7343,-56.7343,-56.7343 dDocent_Contig_7491 54 . G C 1646.93 . AB=0.0952381;ABP=152.428;AC=1;AF=0.125;AN=8;AO=10;CIGAR=1X2M1X3M;DP=138;DPB=138;DPRA=0;EPP=24.725;EPPR=120.27;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=4;NUMALT=5;ODDS=1.38778e-17;PAIRED=1;PAIREDR=0.981481;PAO=0;PQA=0;PQR=0;PRO=0;QA=334;QR=1831;RO=54;RPL=10;RPP=24.725;RPPR=120.27;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:34:16,0,2,3,0,13:16:552:0,2,3,0,13:0,68,101,0,431:-30.0433,-34.8598,-79.711,-29.343,-74.1949,-73.5929,-26.6752,-71.5272,-66.0112,-70.6241,-34.8598,-79.711,-74.1949,-71.5272,-79.711,0,-44.851,-39.3354,-36.6682,-44.851,-40.9376 1|0:29:0,2,0,6,2,18:0:0:2,0,6,2,18:68,0,199,70,615:-66.008,-60.492,-59.89,-66.008,-60.492,-66.008,-49.9114,-44.3956,-49.9114,-48.1052,-60.3118,-54.7957,-60.3118,-44.2151,-59.7097,-16.0931,-10.5763,-16.0931,0,-10.3946,-10.6746 0|0:42:22,3,0,1,0,15:22:745:3,0,1,0,15:104,0,34,0,524:-36.0061,-34.1757,-93.6711,-42.6288,-94.5742,-103.028,-39.8712,-91.8163,-100.27,-99.969,-42.6288,-94.5742,-103.028,-100.27,-103.028,0,-51.944,-60.3983,-57.6403,-60.3983,-55.8829 0|0:33:16,0,1,0,0,16:16:534:0,1,0,0,16:0,34,0,0,552:-40.0336,-44.8501,-88.0733,-42.0924,-85.3153,-85.0143,-44.8501,-88.0733,-85.3153,-88.0733,-44.8501,-88.0733,-85.3153,-88.0733,-88.0733,0,-43.2226,-40.4643,-43.2226,-43.2226,-38.4062 dDocent_Contig_7492 54 . T G 1620.25 . AB=0.433824;ABP=8.18351;AC=4;AF=0.5;AN=8;AO=59;CIGAR=1X;DP=136;DPB=136;DPRA=0;EPP=131.127;EPPR=168.042;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2320;QR=3035;RO=76;RPL=59;RPP=131.127;RPPR=168.042;RPR=0;RUN=1;SAF=59;SAP=131.127;SAR=0;SRF=76;SRP=168.042;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:55:32,23:32:1275:23:892:-64.0265,0,-98.4671 0/1:53:31,21:31:1243:21:830:-59.2662,0,-96.3967 0/1:14:4,10:4:151:10:397:-31.8736,0,-9.74 0/1:14:9,5:9:366:5:201:-14.2565,0,-29.0907 dDocent_Contig_7493 10 . C T 1409.25 . AB=0.41129;ABP=11.486;AC=3;AF=0.375;AN=8;AO=52;CIGAR=1X;DP=285;DPB=285;DPRA=0;EPP=115.927;EPPR=504.62;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.730769;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2051;QR=9132;RO=231;RPL=0;RPP=115.927;RPPR=504.62;RPR=52;RUN=1;SAF=52;SAP=115.927;SAR=0;SRF=231;SRP=504.62;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:161:160,1:160:6304:1:41:0,-44.3713,-563.012 0/1:91:47,43:47:1881:43:1698:-125.838,0,-142.286 0/1:22:19,2:19:747:2:74:-0.339274,0,-60.8677 0/1:11:5,6:5:200:6:238:-18.4819,0,-15.0671 dDocent_Contig_7494 37 . G A 1572.05 . AB=0.448;ABP=5.94613;AC=4;AF=0.5;AN=8;AO=56;CIGAR=1X;DP=125;DPB=125;DPRA=0;EPP=124.613;EPPR=152.842;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2232;QR=2728;RO=69;RPL=0;RPP=124.613;RPPR=152.842;RPR=56;RUN=1;SAF=56;SAP=124.613;SAR=0;SRF=69;SRP=152.842;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:21,7:21:821:7:284:-17.5046,0,-65.7723 0/1:41:20,21:20:800:21:843:-63.8411,0,-59.9728 0/1:30:19,11:19:740:11:420:-29.1059,0,-57.8896 0/1:26:9,17:9:367:17:685:-54.1513,0,-25.5683 dDocent_Contig_7495 103 . N C 92.0514 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=3;CIGAR=2X7I4X1M1I6M2X1M;DP=3;DPB=4.5;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=33.6667;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=101;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. 1|1:1:0,1:0:0:1:36:-3.29902,-0.30103,0 1|1:2:0,2:0:0:2:65:-5.60335,-0.60206,0 .:.:.:.:.:.:.:. dDocent_Contig_7496 18 . G A 811.5 . AB=0.323529;ABP=30.6008;AC=3;AF=0.375;AN=8;AO=33;CIGAR=1X;DP=113;DPB=113;DPRA=3.09091;EPP=74.6689;EPPR=176.728;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1291;QR=3162;RO=80;RPL=0;RPP=74.6689;RPPR=176.728;RPR=33;RUN=1;SAF=33;SAP=74.6689;SAR=0;SRF=80;SRP=176.728;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:60:43,17:43:1701:17:671:-42.6595,0,-135.243 0/1:37:23,14:23:927:14:540:-37.802,0,-72.5962 0/0:11:11,0:11:419:0:0:0,-3.31133,-38.0501 0/1:5:3,2:3:115:2:80:-6.08642,0,-9.21933 dDocent_Contig_7497 61 . C T 550.369 . AB=0.213115;ABP=46.6177;AC=1;AF=0.125;AN=8;AO=13;CIGAR=3M1X1M;DP=98;DPB=102.4;DPRA=0;EPP=31.2394;EPPR=139.813;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.952381;PAO=0;PQA=0;PQR=0;PRO=0;QA=489;QR=2483;RO=63;RPL=13;RPP=31.2394;RPPR=139.813;RPR=0;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=63;SRP=139.813;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:18:6,10,2:6:244:10,2:379,78:-29.2564,0,-17.1286,-24.6492,-13.7314,-44.1839 0|0:37:32,5,0:32:1266:5,0:197,0:-6.96829,0,-103.075,-16.6013,-104.58,-120.787 0|1:26:12,5,9:12:467:5,9:197,330:-23.3328,-10.7282,-47.6138,0,-22.1659,-35.6653 0|0:17:13,2,2:13:506:2,2:81,81:-2.76577,0,-40.9676,0,-34.8884,-40.9676 dDocent_Contig_7498 17 . T C 152.039 . AB=0.225806;ABP=23.254;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=63;DPB=63;DPRA=2.90625;EPP=18.2106;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=284;QR=2262;RO=56;RPL=0;RPP=18.2106;RPPR=124.613;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:24,7:24:974:7:284:-16.6019,0,-78.6257 0/0:17:17,0:17:689:0:0:0,-5.11751,-62.338 0/0:7:7,0:7:277:0:0:0,-2.10721,-25.2985 0/0:8:8,0:8:322:0:0:0,-2.40824,-29.3478 dDocent_Contig_7500 99 . N A 1044.33 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=31;CIGAR=2X1I8X1M1X;DP=31;DPB=33.5833;DPRA=0;EPP=70.3259;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=0.548387;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1138;QR=0;RO=0;RPL=31;RPP=70.3259;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=70.3259;SAR=31;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:6:0,6:0:0:6:228:-20.885,-1.80618,0 1|1:10:0,10:0:0:10:363:-33.0129,-3.0103,0 1|1:12:0,12:0:0:12:437:-39.6722,-3.61236,0 1|1:3:0,3:0:0:3:110:-10.261,-0.90309,0 dDocent_Contig_7501 15 . C G 187.155 . AB=0.185714;ABP=63.067;AC=4;AF=0.5;AN=8;AO=13;CIGAR=1X4M;DP=88;DPB=88;DPRA=0;EPP=31.2394;EPPR=161.528;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=488;QR=2887;RO=73;RPL=0;RPP=31.2394;RPPR=161.528;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=73;SRP=161.528;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:37:33,0,4:33:1299:0,4:0,154:-3.09286,-13.0269,-119.885,0,-107.244,-106.04 0|1:18:16,2,0:16:631:2,0:79,0:-2.07909,0,-51.7023,-6.89557,-52.3044,-58.8054 0|1:17:11,0,6:11:441:0,6:0,214:-14.4813,-17.7926,-54.155,0,-36.7343,-34.9281 0|1:16:13,0,3:13:516:0,3:0,120:-6.37083,-10.2842,-52.7603,0,-42.875,-41.9719 dDocent_Contig_7502 114 . C A 92.0964 . AB=0.3125;ABP=7.89611;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=44;DPB=44;DPRA=1.71429;EPP=13.8677;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=171;QR=1340;RO=39;RPL=0;RPP=13.8677;RPPR=87.6977;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=87.6977;SRR=39;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:8:8,0:8:279:0:0:0,-2.40824,-25.449 0/0:10:10,0:10:348:0:0:0,-3.0103,-31.656 0/1:16:11,5:11:363:5:171:-10.9086,0,-28.1722 0/0:10:10,0:10:350:0:0:0,-3.0103,-31.8375 dDocent_Contig_7503 19 . T A 2412.75 . AB=0.0657895;ABP=127.47;AC=0;AF=0;AN=8;AO=5;CIGAR=5M1X9M;DP=224;DPB=228.067;DPRA=6.33333;EPP=13.8677;EPPR=259.244;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=194;QR=4655;RO=118;RPL=0;RPP=13.8677;RPPR=259.244;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=118;SRP=259.244;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:76:48,20,0,5:48:1897:20,0,5:770,0,194:-48.762,0,-150.093,-63.2115,-156.113,-219.324,-47.2752,-140.178,-203.389,-201.884 0|0:109:46,58,3,0:46:1816:58,3,0:2209,119,0:-167.373,0,-132.016,-171.423,-139.679,-319.954,-181.22,-149.475,-320.857,-330.653 0|0:27:12,11,2,0:12:466:11,2,0:416,73,0:-30.5381,0,-35.0399,-28.185,-32.3871,-65.885,-34.1505,-38.3512,-66.487,-72.451 0|0:12:12,0,0,0:12:476:0,0,0:0,0,0:0,-3.61236,-43.1912,-3.61236,-43.1912,-43.1912,-3.61236,-43.1912,-43.1912,-43.1912 dDocent_Contig_7504 18 . A G 2246.57 . AB=0.260274;ABP=185.206;AC=3;AF=0.375;AN=8;AO=103;CIGAR=1X;DP=521;DPB=521;DPRA=0;EPP=226.672;EPPR=910.686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=2.77556e-17;PAIRED=1;PAIREDR=0.992823;PAO=0;PQA=0;PQR=0;PRO=0;QA=4080;QR=16654;RO=418;RPL=0;RPP=226.672;RPPR=910.686;RPR=103;RUN=1;SAF=103;SAP=226.672;SAR=0;SRF=418;SRP=910.686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:156:148,8:148:5886:8:312:0,-18.518,-501.088 0/1:167:120,47:120:4795:47:1848:-116.257,0,-381.168 0/1:135:104,31:104:4136:31:1234:-70.6952,0,-331.574 0/1:63:46,17:46:1837:17:686:-43.1029,0,-146.576 dDocent_Contig_7508 14 . T G 140.461 . AB=0.122951;ABP=153.661;AC=1;AF=0.125;AN=8;AO=15;CIGAR=1X;DP=408;DPB=408;DPRA=1.27972;EPP=35.5824;EPPR=854.227;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=577;QR=15650;RO=392;RPL=0;RPP=35.5824;RPPR=854.227;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=392;SRP=854.227;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:122:106,15:106:4252:15:577:-15.444,0,-345.817 0/0:172:172,0:172:6867:0:0:0,-51.7772,-617.716 0/0:65:65,0:65:2571:0:0:0,-19.5669,-231.524 0/0:49:49,0:49:1960:0:0:0,-14.7505,-176.595 dDocent_Contig_7509 47 . A T 154.317 . AB=0.352941;ABP=6.20364;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=60;DPB=60;DPRA=1.18605;EPP=16.0391;EPPR=111.745;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=0.981481;PAO=0;PQA=0;PQR=0;PRO=0;QA=243;QR=2127;RO=54;RPL=6;RPP=16.0391;RPPR=111.745;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:17:17,0:17:657:0:0:0,-5.11751,-59.4565 0/0:17:17,0:17:678:0:0:0,-5.11751,-61.3521 0/1:17:11,6:11:444:6:243:-17.1307,0,-35.1977 0/0:9:9,0:9:348:0:0:0,-2.70927,-31.67 dDocent_Contig_7511 46 . G T 99.1069 . AB=0.163265;ABP=51.2702;AC=3;AF=0.375;AN=8;AO=10;CIGAR=1X;DP=83;DPB=83;DPRA=0;EPP=24.725;EPPR=161.528;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=403;QR=2930;RO=73;RPL=0;RPP=24.725;RPPR=161.528;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=73;SRP=161.528;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:33:29,4:29:1176:4:161:-4.94091,0,-96.1815 0/0:34:32,2:32:1274:2:82:0,-2.45534,-107.15 0/1:11:9,2:9:358:2:79:-4.1863,0,-29.2693 0/1:5:3,2:3:122:2:81:-6.18058,0,-9.86734 dDocent_Contig_7512 25 . C A 31.0739 . AB=0.25;ABP=7.35324;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X;DP=44;DPB=44;DPRA=0.666667;EPP=7.35324;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=76;QR=1659;RO=42;RPL=0;RPP=7.35324;RPPR=94.2121;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:19:19,0:19:748:0:0:0,-5.71957,-67.6389 0/1:8:6,2:6:240:2:76:-4.80602,0,-19.5672 0/0:9:9,0:9:349:0:0:0,-2.70927,-31.7671 0/0:8:8,0:8:322:0:0:0,-2.40824,-29.3489 dDocent_Contig_7513 19 . G A 710.455 . AB=0.322917;ABP=29.1584;AC=4;AF=0.5;AN=8;AO=31;CIGAR=1X;DP=96;DPB=96;DPRA=0;EPP=70.3259;EPPR=144.156;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1177;QR=2511;RO=65;RPL=0;RPP=70.3259;RPPR=144.156;RPR=31;RUN=1;SAF=31;SAP=70.3259;SAR=0;SRF=65;SRP=144.156;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:44:37,7:37:1425:7:264:-10.8733,0,-115.276 0/1:18:12,6:12:457:6:226:-15.2784,0,-36.053 0/1:23:11,12:11:437:12:461:-34.9076,0,-32.7615 0/1:11:5,6:5:192:6:226:-17.3842,0,-14.337 dDocent_Contig_7514 31 . T C 210.368 . AB=0.142857;ABP=72.8076;AC=2;AF=0.25;AN=8;AO=9;CIGAR=2X;DP=165;DPB=165;DPRA=0.205882;EPP=22.5536;EPPR=311.359;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=1.38778e-17;PAIRED=0.777778;PAIREDR=0.992958;PAO=0;PQA=0;PQR=0;PRO=0;QA=362;QR=5618;RO=142;RPL=0;RPP=22.5536;RPPR=311.359;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=142;SRP=311.359;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:102:97,0,5:97:3830:0,5:0,202:0,-29.1999,-344.318,-12.1432,-327.664,-326.159 0|1:29:21,5,3:21:841:5,3:203,123:-10.4183,0,-67.768,-6.58621,-59.1197,-74.9601 0|1:19:14,3,2:14:547:3,2:119,82:-5.57333,0,-44.0447,-3.01431,-38.1773,-47.3719 0|0:15:10,1,4:10:400:1,4:40,163:-10.443,-10.1597,-42.8034,0,-29.6549,-31.7459 dDocent_Contig_7516 26 . G A 39.5412 . AB=0.157895;ABP=22.325;AC=1;AF=0.125;AN=8;AO=10;CIGAR=1X;DP=183;DPB=183;DPRA=0;EPP=24.725;EPPR=378.675;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.6;PAIREDR=0.890173;PAO=0;PQA=0;PQR=0;PRO=0;QA=401;QR=6864;RO=173;RPL=0;RPP=24.725;RPPR=378.675;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=173;SRP=378.675;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:52:48,4:48:1946:4:159:0,-0.961437,-160.637 0/0:60:58,2:58:2310:2:79:0,-10.5646,-200.563 0/0:52:51,1:51:1976:1:41:0,-11.559,-173.938 0/1:19:16,3:16:632:3:122:-5.65292,0,-51.4925 dDocent_Contig_7517 67 . T A 144.775 . AB=0.25;ABP=18.2106;AC=2;AF=0.25;AN=8;AO=7;CIGAR=1X;DP=105;DPB=105;DPRA=0.363636;EPP=18.2106;EPPR=215.815;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=282;QR=3913;RO=98;RPL=7;RPP=18.2106;RPPR=215.815;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=98;SRP=215.815;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:37:37,0:37:1485:0:0:0,-11.1381,-133.894 0/0:40:40,0:40:1582:0:0:0,-12.0412,-142.621 0/1:20:14,6:14:562:6:242:-16.1363,0,-44.8983 0/1:8:7,1:7:284:1:40:-1.58744,0,-23.5258 dDocent_Contig_7518 95 . A G 39.4745 . AB=0.272727;ABP=7.94546;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=42;DPB=42;DPRA=1.06452;EPP=9.52472;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=96;QR=1327;RO=39;RPL=3;RPP=9.52472;RPPR=87.6977;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:18:18,0:18:605:0:0:0,-5.41854,-54.7681 0/1:11:8,3:8:271:3:96:-5.64633,0,-21.4089 0/0:8:8,0:8:276:0:0:0,-2.40824,-25.1759 0/0:5:5,0:5:175:0:0:0,-1.50515,-16.0937 dDocent_Contig_7519 20 . T C 1850.44 . AB=0.272727;ABP=131.325;AC=4;AF=0.5;AN=8;AO=78;CIGAR=1X;DP=286;DPB=286;DPRA=0;EPP=172.385;EPPR=454.677;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3081;QR=8338;RO=208;RPL=0;RPP=172.385;RPPR=454.677;RPR=78;RUN=1;SAF=78;SAP=172.385;SAR=0;SRF=208;SRP=454.677;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:81:62,19:62:2501:19:720:-40.7227,0,-200.84 0/1:79:52,27:52:2105:27:1099:-75.4105,0,-165.843 0/1:76:52,24:52:2074:24:941:-62.1022,0,-163.959 0/1:50:42,8:42:1658:8:321:-14.2064,0,-134.399 dDocent_Contig_7520 8 . G A 508.479 . AB=0.0630631;ABP=187.077;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X2M1X;DP=142;DPB=142;DPRA=0;EPP=18.2106;EPPR=239.701;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=270;QR=4228;RO=109;RPL=0;RPP=18.2106;RPPR=239.701;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=109;SRP=239.701;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:53:45,5,3:45:1733:5,3:191,123:-2.10781,0,-140.761,-5.49151,-132.113,-146.881 0|0:58:41,2,15:41:1590:2,15:79,584:-35.6439,-41.4845,-171.513,0,-124.123,-126.109 0|0:25:19,0,6:19:748:0,6:0,242:-14.6312,-20.3508,-81.8788,0,-61.9286,-60.1224 0|0:6:4,0,2:4:157:0,2:0,80:-5.78561,-6.98973,-19.8975,0,-13.3048,-12.7028 dDocent_Contig_7521 145 . G A 93.9434 . AB=0.130435;ABP=112.15;AC=2;AF=0.25;AN=8;AO=12;CIGAR=1X;DP=175;DPB=175;DPRA=1.10843;EPP=29.068;EPPR=356.96;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=442;QR=5642;RO=163;RPL=0;RPP=29.068;RPPR=356.96;RPR=12;RUN=1;SAF=0;SAP=29.068;SAR=12;SRF=0;SRP=356.96;SRR=163;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:68:60,8:60:2061:8:298:-6.70345,0,-165.288 0/0:49:49,0:49:1684:0:0:0,-14.7505,-151.832 0/0:34:34,0:34:1183:0:0:0,-10.235,-106.773 0/1:24:20,4:20:714:4:144:-6.08881,0,-57.3623 dDocent_Contig_7522 7 . T A 156.529 . AB=0.5;ABP=3.0103;AC=7;AF=0.875;AN=8;AO=5;CIGAR=1X;DP=6;DPB=6;DPRA=0;EPP=13.8677;EPPR=5.18177;GTI=0;LEN=1;MEANALT=1;MQM=40;MQMR=40;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=191;QR=37;RO=1;RPL=0;RPP=13.8677;RPPR=5.18177;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=1;SRP=5.18177;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:2:1,1:1:37:1:39:-3.04406,0,-2.92153 1/1:2:0,2:0:0:2:77:-6.87202,-0.60206,0 1/1:1:0,1:0:0:1:38:-3.58758,-0.30103,0 1/1:1:0,1:0:0:1:37:-3.52359,-0.30103,0 dDocent_Contig_7524 161 . T C 310.406 . AB=0.264151;ABP=28.6173;AC=3;AF=0.375;AN=8;AO=14;CIGAR=1X;DP=59;DPB=59;DPRA=2.94444;EPP=33.4109;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=569;QR=1790;RO=45;RPL=14;RPP=33.4109;RPPR=100.727;RPR=0;RUN=1;SAF=0;SAP=33.4109;SAR=14;SRF=0;SRP=100.727;SRR=45;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:14,8:14:555:8:325:-22.997,0,-43.6644 0/1:26:21,5:21:836:5:204:-10.9173,0,-67.7268 0/1:5:4,1:4:161:1:40:-2.49053,0,-13.3697 0/0:6:6,0:6:238:0:0:0,-1.80618,-21.7925 dDocent_Contig_7525 131 . C T 1560.84 . AB=0.592593;ABP=11.0528;AC=3;AF=0.375;AN=8;AO=64;CIGAR=1X;DP=110;DPB=110;DPRA=18;EPP=141.985;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2145;QR=1533;RO=46;RPL=0;RPP=141.985;RPPR=102.898;RPR=64;RUN=1;SAF=0;SAP=141.985;SAR=64;SRF=0;SRP=102.898;SRR=46;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:42:14,28:14:465:28:929:-71.2706,0,-29.5264 0/1:45:18,27:18:622:27:912:-68.8436,0,-42.7587 0/1:21:12,9:12:380:9:304:-21.367,0,-28.1836 0/0:2:2,0:2:66:0:0:0,-0.60206,-6.26836 dDocent_Contig_7526 8 . G A 98.2391 . AB=0.179487;ABP=37.8095;AC=2;AF=0.25;AN=8;AO=9;CIGAR=1X;DP=93;DPB=93;DPRA=2.25;EPP=22.5536;EPPR=185.414;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=347;QR=3212;RO=84;RPL=0;RPP=22.5536;RPPR=185.414;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=84;SRP=185.414;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:33:28,5:28:1069:5:191:-7.62453,0,-86.5802 0/0:42:40,2:40:1537:2:78:0,-5.23979,-131.199 0/1:6:4,2:4:155:2:78:-5.59729,0,-12.5193 0/0:12:12,0:12:451:0:0:0,-3.61236,-40.9362 dDocent_Contig_7527 23 . T A 41.8061 . AB=0.333333;ABP=4.45795;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=77;DPB=77;DPRA=1.13889;EPP=11.6962;EPPR=161.528;GTI=0;LEN=1;MEANALT=1;MQM=59.25;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=0;PAIREDR=0.917808;PAO=0;PQA=0;PQR=0;PRO=0;QA=143;QR=2918;RO=73;RPL=0;RPP=11.6962;RPPR=161.528;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=73;SRP=161.528;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:25:25,0:25:989:0:0:0,-7.52575,-89.3041 0/0:35:33,2:33:1324:2:62:0,-4.65131,-113.534 0/0:11:11,0:11:443:0:0:0,-3.31133,-40.2248 0/1:6:4,2:4:162:2:81:-5.87955,0,-13.1608 dDocent_Contig_7528 12 . C T 102.123 . AB=0.217391;ABP=18.9659;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=189;DPB=189;DPRA=0.415663;EPP=13.8677;EPPR=402.561;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=205;QR=7338;RO=184;RPL=0;RPP=13.8677;RPPR=402.561;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=184;SRP=402.561;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:61:61,0:61:2444:0:0:0,-18.3628,-220.099 0/0:74:74,0:74:2942:0:0:0,-22.2762,-264.871 0/0:31:31,0:31:1244:0:0:0,-9.33193,-112.229 0/1:23:18,5:18:708:5:205:-11.9113,0,-57.1175 dDocent_Contig_7531 20 . G T 178.42 . AB=0.225;ABP=29.2851;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X;DP=119;DPB=119;DPRA=1.51899;EPP=22.5536;EPPR=241.872;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=347;QR=4351;RO=110;RPL=0;RPP=22.5536;RPPR=241.872;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=110;SRP=241.872;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:58:58,0:58:2318:0:0:0,-17.4597,-208.782 0/1:40:31,9:31:1193:9:347:-19.541,0,-95.5893 0/0:11:11,0:11:436:0:0:0,-3.31133,-39.5916 0/0:10:10,0:10:404:0:0:0,-3.0103,-36.7189 dDocent_Contig_7532 1 . N G 74.9833 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=79;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:79:-7.49724,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_7533 108 . C G 588.046 . AB=0.185185;ABP=26.2531;AC=3;AF=0.375;AN=8;AO=29;CIGAR=1X;DP=242;DPB=242;DPRA=0;EPP=65.983;EPPR=465.534;GTI=0;LEN=1;MEANALT=1;MQM=36.4483;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.967136;PAO=0;PQA=0;PQR=0;PRO=0;QA=985;QR=7210;RO=213;RPL=0;RPP=65.983;RPPR=465.534;RPR=29;RUN=1;SAF=0;SAP=65.983;SAR=29;SRF=0;SRP=465.534;SRR=213;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:41:38,3:38:1296:3:105:0,-4.49443,-109.091 0/0:155:153,2:153:5180:2:69:0,-40.107,-459.823 1/1:19:0,19:0:0:19:637:-53.8597,-5.71957,0 0/1:27:22,5:22:734:5:174:-6.34277,0,-58.2437 dDocent_Contig_7534 8 . G T 1521.71 . AB=0.216418;ABP=96.6105;AC=4;AF=0.5;AN=8;AO=29;CIGAR=1X4M3D1M1X11M3I4M;DP=155;DPB=149.64;DPRA=0;EPP=65.983;EPPR=122.441;GTI=0;LEN=1;MEANALT=4.33333;MQM=59.7241;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1064;QR=2153;RO=55;RPL=0;RPP=65.983;RPPR=122.441;RPR=29;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:48:18,16,9,2:18:706:16,9,2:612,330,82:-44.8012,0,-53.2479,-23.257,-31.1031,-78.6078,-43.4497,-51.2947,-74.5479,-100.911 0|1:67:26,18,17,4:26:1023:18,17,4:705,617,149:-50.1623,0,-78.7573,-7.62424,-33.8123,-86.6708,-45.7932,-71.9805,-79.5938,-128.753 0|1:21:9,10,0,2:9:347:10,0,2:373,0,74:-27.8253,0,-25.4963,-30.5346,-28.5066,-59.0341,-24.4828,-22.4572,-52.9827,-52.3806 1|0:19:2,5,3,9:2:77:5,3,9:181,117,352:-36.78,-22.6189,-27.435,-27.7627,-19.3225,-33.1823,-8.43401,0,-5.13456,-12.0493 dDocent_Contig_7536 27 . G C 303.536 . AB=0.282609;ABP=21.8927;AC=2;AF=0.25;AN=8;AO=13;CIGAR=1X;DP=100;DPB=100;DPRA=0.851852;EPP=31.2394;EPPR=191.928;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.942529;PAO=0;PQA=0;PQR=0;PRO=0;QA=507;QR=3461;RO=87;RPL=0;RPP=31.2394;RPPR=191.928;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=87;SRP=191.928;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:11,1:11:441:1:41:-0.482207,0,-36.4304 0/0:22:22,0:22:892:0:0:0,-6.62266,-80.5868 0/0:32:32,0:32:1285:0:0:0,-9.63296,-115.913 0/1:34:22,12:22:843:12:466:-32.0493,0,-65.934 dDocent_Contig_7537 199 . A G 248.757 . AB=0.4;ABP=5.18177;AC=1;AF=0.125;AN=8;AO=11;CIGAR=1X;DP=49;DPB=49;DPRA=6;EPP=26.8965;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=414;QR=1464;RO=38;RPL=11;RPP=26.8965;RPPR=85.5263;RPR=0;RUN=1;SAF=0;SAP=26.8965;SAR=11;SRF=0;SRP=85.5263;SRR=38;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:17:16,1:16:611:1:39:0,-1.22095,-51.4323 0/0:2:2,0:2:78:0:0:0,-0.60206,-7.40347 0/1:25:15,10:15:581:10:375:-26.5743,0,-45.1073 0/0:5:5,0:5:194:0:0:0,-1.50515,-17.8328 dDocent_Contig_7538 104 . N T 69.2682 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X3I4X9I2M;DP=2;DPB=5.42857;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=56;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=73;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:2:0,2:0:0:2:73:-6.92574,-0.60206,0 .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. dDocent_Contig_7539 32 . G A 254.959 . AB=0.25;ABP=24.725;AC=4;AF=0.5;AN=8;AO=12;CIGAR=1X;DP=87;DPB=87;DPRA=0.311111;EPP=29.068;EPPR=165.871;GTI=0;LEN=1;MEANALT=1;MQM=40;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=481;QR=2979;RO=75;RPL=0;RPP=29.068;RPPR=165.871;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=75;SRP=165.871;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:13,4:13:506:4:164:-8.74312,0,-40.7607 0/0:45:45,0:45:1801:0:0:0,-13.5463,-162.298 0/1:23:17,6:17:672:6:236:-13.0776,0,-53.8836 1/1:2:0,2:0:0:2:81:-7.07285,-0.60206,0 dDocent_Contig_7541 123 . T C 147.553 . AB=0.75;ABP=7.35324;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=47;DPB=47;DPRA=0.615385;EPP=16.0391;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=40;MQMR=40;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=215;QR=1479;RO=41;RPL=0;RPP=16.0391;RPPR=92.0407;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=92.0407;SRR=41;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:16:16,0:16:585:0:0:0,-4.81648,-50.5801 0/1:8:2,6:2:74:6:215:-16.4537,0,-4.28659 0/0:13:13,0:13:464:0:0:0,-3.91339,-40.3356 0/0:10:10,0:10:356:0:0:0,-3.0103,-31.0078 dDocent_Contig_7542 20 . G C 169.174 . AB=0.35;ABP=6.91895;AC=2;AF=0.25;AN=8;AO=7;CIGAR=1X;DP=46;DPB=46;DPRA=0.769231;EPP=18.2106;EPPR=63.6445;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.923077;PAO=0;PQA=0;PQR=0;PRO=0;QA=284;QR=1547;RO=39;RPL=0;RPP=18.2106;RPPR=87.6977;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=36;SRP=63.6445;SRR=3;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:8:6,2:6:238:2:80:-5.18355,0,-19.3844 0/0:15:15,0:15:593:0:0:0,-4.51545,-53.7069 0/0:11:11,0:11:442:0:0:0,-3.31133,-40.1353 0/1:12:7,5:7:274:5:204:-15.1317,0,-21.4143 dDocent_Contig_7543 33 . C T 82.4288 . AB=0.222222;ABP=21.1059;AC=2;AF=0.25;AN=8;AO=6;CIGAR=1X;DP=67;DPB=67;DPRA=0.675;EPP=16.0391;EPPR=135.47;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.833333;PAIREDR=0.852459;PAO=0;PQA=0;PQR=0;PRO=0;QA=212;QR=2424;RO=61;RPL=0;RPP=16.0391;RPPR=135.47;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=61;SRP=135.47;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:23:23,0:23:932:0:0:0,-6.92369,-84.1833 0/1:17:14,3:14:541:3:120:-6.07018,0,-43.905 0/0:17:17,0:17:678:0:0:0,-5.11751,-61.3522 0/1:10:7,3:7:273:3:92:-5.5706,0,-21.9229 dDocent_Contig_7544 189 . T G 60.1311 . AB=0.3;ABP=6.48466;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=69;DPB=69;DPRA=0.508475;EPP=9.52472;EPPR=146.327;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=115;QR=2629;RO=66;RPL=3;RPP=9.52472;RPPR=146.327;RPR=0;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=146.327;SRR=66;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:26:26,0:26:1041:0:0:0,-7.82678,-93.9833 0/0:15:15,0:15:610:0:0:0,-4.51545,-55.2376 0/1:10:7,3:7:279:3:115:-7.71208,0,-22.4699 0/0:18:18,0:18:699:0:0:0,-5.41854,-63.2274 dDocent_Contig_7545 8 . G C 320.71 . AB=0.258621;ABP=32.3626;AC=2;AF=0.25;AN=8;AO=15;CIGAR=1X;DP=127;DPB=127;DPRA=0.84058;EPP=35.5824;EPPR=246.215;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=580;QR=4318;RO=112;RPL=0;RPP=35.5824;RPPR=246.215;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=112;SRP=246.215;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:54:54,0:54:2093:0:0:0,-16.2556,-188.597 0/0:15:15,0:15:578:0:0:0,-4.51545,-52.3616 0/1:36:30,6:30:1158:6:231:-10.3208,0,-93.6812 0/1:22:13,9:13:489:9:349:-25.1481,0,-37.7314 dDocent_Contig_7546 11 . T A 309.55 . AB=0.0900901;ABP=165.01;AC=1;AF=0.125;AN=8;AO=10;CIGAR=1M1D2M2X;DP=206;DPB=200.833;DPRA=0;EPP=24.725;EPPR=348.274;GTI=0;LEN=1;MEANALT=3.5;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=397;QR=6168;RO=159;RPL=0;RPP=24.725;RPPR=348.274;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=159;SRP=348.274;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:39:24,1,7,6:24:910:1,7,6:40,283,239:-16.1104,-20.0401,-94.3327,0,-71.2979,-72.4863,-3.65633,-74.9513,-54.9098,-76.4406 0|0:74:63,0,4,7:63:2448:0,4,7:0,161,284:-4.45813,-23.423,-224.569,-10.1554,-211.3,-210.095,0,-201.146,-187.877,-199.039 0|1:72:55,9,6,2:55:2149:9,6,2:357,245,81:-12.8258,0,-173.954,-9.16342,-156.446,-184.029,-22.7029,-169.984,-179.155,-198.77 0|0:21:17,0,3,1:17:661:0,3,1:0,122,39:-4.95811,-10.0756,-64.3846,0,-54.3188,-53.4158,-6.87387,-61.1788,-51.1129,-60.8778 dDocent_Contig_7547 145 . T C 31.8384 . AB=0.2;ABP=10.8276;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X;DP=42;DPB=42;DPRA=0.9375;EPP=7.35324;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=80;QR=1570;RO=40;RPL=0;RPP=7.35324;RPPR=89.8692;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=89.8692;SRR=40;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:8,2:8:325:2:80:-4.58149,0,-26.6093 0/0:12:12,0:12:467:0:0:0,-3.61236,-42.3779 0/0:8:8,0:8:316:0:0:0,-2.40824,-28.8038 0/0:12:12,0:12:462:0:0:0,-3.61236,-41.9257 dDocent_Contig_7548 12 . C T 718.127 . AB=0.280374;ABP=47.84;AC=4;AF=0.5;AN=8;AO=30;CIGAR=1X2M1X;DP=107;DPB=107;DPRA=0;EPP=68.1545;EPPR=163.699;GTI=0;LEN=1;MEANALT=1.5;MQM=59.5333;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.233333;PAIREDR=0.527027;PAO=0;PQA=0;PQR=0;PRO=0;QA=1186;QR=2940;RO=74;RPL=0;RPP=68.1545;RPPR=163.699;RPR=30;RUN=1;SAF=30;SAP=68.1545;SAR=0;SRF=74;SRP=163.699;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:34:29,4,1:29:1153:4,1:159,41:-4.35098,0,-93.7122,-9.6943,-91.5319,-104.322 0|1:34:25,9,0:25:994:9,0:356,0:-22.1664,0,-79.5269,-29.6921,-82.2362,-111.533 0|1:30:19,11,0:19:752:11,0:433,0:-30.2086,0,-58.9743,-35.9282,-62.2856,-97.8203 1|0:9:1,6,2:1:41:6,2:238,80:-22.4839,-3.19598,-4.77718,-16.1941,0,-18.978 dDocent_Contig_7549 12 . G T 2020.72 . AB=0.5;ABP=3.0103;AC=4;AF=0.5;AN=8;AO=73;CIGAR=2X;DP=146;DPB=146;DPRA=0;EPP=161.528;EPPR=161.528;GTI=0;LEN=1;MEANALT=1;MQM=58.6712;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.972603;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2838;QR=2820;RO=73;RPL=0;RPP=161.528;RPPR=161.528;RPR=73;RUN=1;SAF=73;SAP=161.528;SAR=0;SRF=73;SRP=161.528;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:53:26,27:26:1012:27:1038:-74.4539,0,-75.421 0|1:41:18,23:18:684:23:917:-70.4964,0,-49.5399 0|1:21:11,10:11:426:10:384:-28.5938,0,-32.3677 0|1:31:18,13:18:698:13:499:-35.9258,0,-53.8151 dDocent_Contig_7551 72 . A C 138.779 . AB=0.212121;ABP=26.7649;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=83;DPB=83;DPRA=1.98;EPP=18.2106;EPPR=168.042;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=276;QR=2798;RO=76;RPL=7;RPP=18.2106;RPPR=168.042;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=76;SRP=168.042;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:33:26,7:26:961:7:276:-15.2759,0,-76.8683 0/0:22:22,0:22:832:0:0:0,-6.62266,-75.1987 0/0:21:21,0:21:762:0:0:0,-6.32163,-68.8988 0/0:7:7,0:7:243:0:0:0,-2.10721,-22.2046 dDocent_Contig_7553 162 . A G 1527.79 . AB=0.390411;ABP=18.2404;AC=4;AF=0.5;AN=8;AO=57;CIGAR=1X;DP=146;DPB=146;DPRA=0;EPP=126.784;EPPR=196.271;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.947368;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2253;QR=3539;RO=89;RPL=57;RPP=126.784;RPPR=196.271;RPR=0;RUN=1;SAF=0;SAP=126.784;SAR=57;SRF=0;SRP=196.271;SRR=89;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:69:37,32:37:1476:32:1269:-93.7083,0,-112.312 0/1:39:35,4:35:1380:4:160:-3.04326,0,-112.718 0/1:27:13,14:13:524:14:552:-41.8854,0,-39.3779 0/1:11:4,7:4:159:7:272:-21.5305,0,-11.3801 dDocent_Contig_7554 15 . A G 917.692 . AB=0.584906;ABP=6.32897;AC=3;AF=0.375;AN=8;AO=32;CIGAR=1X;DP=67;DPB=67;DPRA=0;EPP=72.4974;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1286;QR=1371;RO=35;RPL=0;RPP=72.4974;RPPR=79.0118;RPR=32;RUN=1;SAF=32;SAP=72.4974;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:11,8:11:428:8:320:-23.4478,0,-33.1476 0/1:14:5,9:5:201:9:362:-28.728,0,-14.2565 0/1:20:6,14:6:235:14:563:-44.9905,0,-15.5008 0/0:14:13,1:13:507:1:41:0,-0.119853,-41.8794 dDocent_Contig_7555 20 . A G 1878.25 . AB=0.507937;ABP=3.04477;AC=5;AF=0.625;AN=8;AO=58;CIGAR=1X;DP=89;DPB=89;DPRA=0;EPP=128.956;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=59.6552;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.931034;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2343;QR=1242;RO=31;RPL=0;RPP=128.956;RPPR=70.3259;RPR=58;RUN=1;SAF=58;SAP=128.956;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:15,9:15:600:9:363:-25.7973,0,-47.1143 1/1:26:0,26:0:0:26:1046:-94.4198,-7.82678,0 0/1:20:8,12:8:325:12:484:-37.8906,0,-23.599 0/1:19:8,11:8:317:11:450:-35.1153,0,-23.1759 dDocent_Contig_7556 12 . C A 201.87 . AB=0.155556;ABP=95.7563;AC=2;AF=0.25;AN=8;AO=14;CIGAR=1X;DP=114;DPB=114;DPRA=3.75;EPP=33.4109;EPPR=220.158;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.92;PAO=0;PQA=0;PQR=0;PRO=0;QA=555;QR=4046;RO=100;RPL=0;RPP=33.4109;RPPR=220.158;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=100;SRP=220.158;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:42:37,5:37:1486:5:189:-4.72897,0,-121.34 0/1:48:39,9:39:1583:9:366:-18.8557,0,-128.25 0/0:11:11,0:11:448:0:0:0,-3.31133,-40.6758 0/0:13:13,0:13:529:0:0:0,-3.91339,-47.9569 dDocent_Contig_7557 27 . T G 2232.14 . AB=0.755102;ABP=58.405;AC=4;AF=0.5;AN=8;AO=74;CIGAR=1X;DP=98;DPB=98;DPRA=0;EPP=163.699;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.986486;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2876;QR=962;RO=24;RPL=0;RPP=163.699;RPPR=55.1256;RPR=74;RUN=1;SAF=74;SAP=163.699;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:7,23:7:283:23:895:-71.8182,0,-16.8127 0/1:49:8,41:8:324:41:1591:-128.677,0,-14.7787 0/1:7:3,4:3:115:4:150:-11.7535,0,-8.616 0/1:12:6,6:6:240:6:240:-18.3631,0,-18.3622 dDocent_Contig_7558 44 . T G 1375.43 . AB=0.461538;ABP=4.34659;AC=3;AF=0.375;AN=8;AO=48;CIGAR=1X;DP=107;DPB=107;DPRA=11.5556;EPP=107.241;EPPR=131.127;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1925;QR=2388;RO=59;RPL=0;RPP=107.241;RPPR=131.127;RPR=48;RUN=1;SAF=48;SAP=107.241;SAR=0;SRF=59;SRP=131.127;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:34:23,11:23:933:11:436:-29.3588,0,-74.0369 0/1:39:14,25:14:572:25:1002:-78.7331,0,-40.0812 0/1:31:19,12:19:764:12:487:-34.8492,0,-59.7471 0/0:3:3,0:3:119:0:0:0,-0.90309,-11.0945 dDocent_Contig_7559 7 . T C 3007.71 . AB=0.590909;ABP=15.6443;AC=4;AF=0.5;AN=8;AO=104;CIGAR=1X;DP=176;DPB=176;DPRA=0;EPP=228.843;EPPR=159.356;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3999;QR=2748;RO=72;RPL=0;RPP=228.843;RPPR=159.356;RPR=104;RUN=1;SAF=104;SAP=228.843;SAR=0;SRF=72;SRP=159.356;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:62:21,41:21:812:41:1570:-122.901,0,-54.7416 0/1:81:37,44:37:1406:44:1699:-128.786,0,-102.436 0/1:16:5,11:5:192:11:418:-33.1547,0,-12.8335 0/1:17:9,8:9:338:8:312:-23.3274,0,-25.6554 dDocent_Contig_7560 14 . A T 965.819 . AB=0.289855;ABP=55.9439;AC=4;AF=0.5;AN=8;AO=40;CIGAR=1X;DP=138;DPB=138;DPRA=0;EPP=89.8692;EPPR=215.815;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1601;QR=3865;RO=98;RPL=0;RPP=89.8692;RPPR=215.815;RPR=40;RUN=1;SAF=40;SAP=89.8692;SAR=0;SRF=98;SRP=215.815;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:45:37,8:37:1440:8:322:-15.8022,0,-116.297 0/1:49:39,10:39:1562:10:397:-21.3363,0,-126.065 0/1:23:12,11:12:471:11:435:-32.5771,0,-35.8145 0/1:21:10,11:10:392:11:447:-34.2642,0,-29.3115 dDocent_Contig_7561 9 . T C 539.564 . AB=0.388889;ABP=8.80089;AC=2;AF=0.25;AN=8;AO=21;CIGAR=1X;DP=107;DPB=107;DPRA=1.01887;EPP=48.6112;EPPR=189.757;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=810;QR=3295;RO=86;RPL=0;RPP=48.6112;RPPR=189.757;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=86;SRP=189.757;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:36:36,0:36:1383:0:0:0,-10.8371,-124.752 0/0:17:17,0:17:660:0:0:0,-5.11751,-59.7371 0/1:39:25,14:25:946:14:540:-37.2042,0,-73.713 0/1:15:8,7:8:306:7:270:-20.1501,0,-23.3848 dDocent_Contig_7562 21 . G C 96.8975 . AB=0.217391;ABP=18.9659;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=75;DPB=75;DPRA=1.32692;EPP=13.8677;EPPR=155.013;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.971429;PAO=0;PQA=0;PQR=0;PRO=0;QA=196;QR=2781;RO=70;RPL=0;RPP=13.8677;RPPR=155.013;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=70;SRP=155.013;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:18,5:18:720:5:196:-11.0877,0,-58.2003 0/0:18:18,0:18:702:0:0:0,-5.41854,-63.4985 0/0:21:21,0:21:845:0:0:0,-6.32163,-76.3641 0/0:13:13,0:13:514:0:0:0,-3.91339,-46.6022 dDocent_Contig_7563 32 . A G 98.4463 . AB=0.171429;ABP=35.8306;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=142;DPB=142;DPRA=0.981308;EPP=16.0391;EPPR=296.159;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=236;QR=5263;RO=135;RPL=0;RPP=16.0391;RPPR=296.159;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=135;SRP=296.159;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:35:28,6:28:1096:6:236:-11.2426,0,-88.5982 0/0:60:60,0:60:2329:0:0:0,-18.0618,-209.773 0/0:26:26,0:26:1012:0:0:0,-7.82678,-91.3786 0/0:21:21,0:21:826:0:0:0,-6.32163,-74.6518 dDocent_Contig_7564 24 . C G 59.9354 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=6;CIGAR=1X;DP=6;DPB=6;DPRA=0;EPP=16.0391;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=10.1667;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=244;QR=0;RO=0;RPL=0;RPP=16.0391;RPPR=0;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:122:-2.89228,-0.90309,0 1/1:3:0,3:0:0:3:122:-2.79906,-0.90309,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_7565 11 . T A 4774.54 . AB=0.367407;ABP=106.086;AC=4;AF=0.5;AN=8;AO=248;CIGAR=2X4M;DP=675;DPB=675;DPRA=0;EPP=541.535;EPPR=693.539;GTI=0;LEN=1;MEANALT=4.5;MQM=33.5806;MQMR=59.9277;NS=4;NUMALT=2;ODDS=0;PAIRED=0.0362903;PAIREDR=0.90566;PAO=0;PQA=0;PQR=0;PRO=0;QA=7968;QR=12616;RO=318;RPL=0;RPP=541.535;RPPR=693.539;RPR=248;RUN=1;SAF=248;SAP=541.535;SAR=0;SRF=318;SRP=693.539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:272:131,38,103:131:5193:38,103:1476,3334:-203.851,-148.28,-564.335,0,-332.521,-396.498 0|1:257:111,32,102:111:4399:32,102:1255,3252:-202.841,-140.951,-493.394,0,-266.769,-331.348 0|1:101:51,15,30:51:2020:15,30:593,970:-56.09,-43.7013,-205.511,0,-138.656,-157.35 0|1:45:25,2,13:25:1004:2,13:81,412:-22.0698,-25.1704,-107.349,0,-78.3387,-78.8467 dDocent_Contig_7566 8 . T C 6568.87 . AB=0.779592;ABP=169.363;AC=6;AF=0.75;AN=8;AO=253;CIGAR=2X1M1X;DP=312;DPB=311.75;DPRA=0;EPP=552.393;EPPR=118.098;GTI=0;LEN=1;MEANALT=2.25;MQM=36.5257;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=0.940711;PAIREDR=0.169811;PAO=0;PQA=0;PQR=0;PRO=0;QA=9823;QR=2047;RO=53;RPL=0;RPP=552.393;RPPR=118.098;RPR=253;RUN=1;SAF=253;SAP=552.393;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:128:18,108:18:699:108:4186:-283.917,0,-24.9991 0|1:117:32,83:32:1229:83:3214:-213.337,0,-75.9738 1|1:47:3,43:3:119:43:1680:-107.523,-3.13264,0 1|1:20:0,19:0:0:19:743:-55.5076,-5.71957,0 dDocent_Contig_7567 18 . C T 240.933 . AB=0.27027;ABP=19.9713;AC=1;AF=0.125;AN=8;AO=10;CIGAR=1X;DP=118;DPB=118;DPRA=1.37037;EPP=24.725;EPPR=237.529;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=403;QR=4297;RO=108;RPL=0;RPP=24.725;RPPR=237.529;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=108;SRP=237.529;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:37:27,10:27:1025:10:403:-25.4912,0,-81.3939 0/0:62:62,0:62:2499:0:0:0,-18.6639,-225.04 0/0:10:10,0:10:410:0:0:0,-3.0103,-37.2606 0/0:9:9,0:9:363:0:0:0,-2.70927,-33.0341 dDocent_Contig_7569 15 . T A 85.3677 . AB=0.153846;ABP=43.6001;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X;DP=159;DPB=159;DPRA=0.962963;EPP=22.5536;EPPR=328.731;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.333333;PAIREDR=0.973333;PAO=0;PQA=0;PQR=0;PRO=0;QA=362;QR=6002;RO=150;RPL=0;RPP=22.5536;RPPR=328.731;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=150;SRP=328.731;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:57:57,0:57:2297:0:0:0,-17.1587,-206.889 0/0:24:24,0:24:950:0:0:0,-7.22472,-85.7997 0/1:39:33,6:33:1320:6:240:-10.2353,0,-107.323 0/0:39:36,3:36:1435:3:122:0,-0.367677,-118.03 dDocent_Contig_7571 22 . G A 403.472 . AB=0.138075;ABP=274.935;AC=4;AF=0.5;AN=8;AO=33;CIGAR=1X;DP=239;DPB=239;DPRA=0;EPP=74.6689;EPPR=450.334;GTI=0;LEN=1;MEANALT=1;MQM=55.5758;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.424242;PAIREDR=0.694175;PAO=0;PQA=0;PQR=0;PRO=0;QA=1311;QR=8135;RO=206;RPL=0;RPP=74.6689;RPPR=450.334;RPR=33;RUN=1;SAF=33;SAP=74.6689;SAR=0;SRF=206;SRP=450.334;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:92:79,13:79:3151:13:520:-19.4189,0,-255.962 0/1:72:64,8:64:2506:8:321:-7.46875,0,-204.002 0/1:43:34,9:34:1360:9:355:-18.8507,0,-109.71 0/1:32:29,3:29:1118:3:115:-0.801401,0,-91.271 dDocent_Contig_7572 17 . C T 567.354 . AB=0.34375;ABP=16.582;AC=3;AF=0.375;AN=8;AO=22;CIGAR=1X;DP=78;DPB=78;DPRA=1.52381;EPP=50.7827;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=892;QR=2272;RO=56;RPL=0;RPP=50.7827;RPPR=124.613;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:44:26,18:26:1057:18:736:-53.317,0,-82.1722 0/1:5:3,2:3:123:2:82:-6.27453,0,-9.95964 0/1:15:13,2:13:528:2:74:-2.50941,0,-43.3509 0/0:14:14,0:14:564:0:0:0,-4.21442,-51.1006 dDocent_Contig_7573 14 . C T 1449.12 . AB=0.29717;ABP=78.766;AC=3;AF=0.375;AN=8;AO=64;CIGAR=1X3M;DP=240;DPB=240;DPRA=0;EPP=141.985;EPPR=367.818;GTI=0;LEN=1;MEANALT=1.75;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.53125;PAIREDR=0.535714;PAO=0;PQA=0;PQR=0;PRO=0;QA=2388;QR=6621;RO=168;RPL=0;RPP=141.985;RPPR=367.818;RPR=64;RUN=1;SAF=64;SAP=141.985;SAR=0;SRF=168;SRP=367.818;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:82:61,0,20:61:2420:0,20:0,740:-42.1816,-60.5445,-259.774,0,-199.245,-193.225 0|1:73:47,4,19:47:1836:4,19:158,707:-43.7018,-44.8452,-194.576,0,-137.92,-145.202 0|1:57:33,0,24:33:1299:0,24:0,903:-64.4265,-74.3605,-181.229,0,-107.251,-100.027 0|0:28:27,0,1:27:1066:0,1:0,38:0,-8.12781,-95.855,-4.63157,-92.739,-92.438 dDocent_Contig_7575 25 . C A 76.3989 . AB=0.210526;ABP=16.8392;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=224;DPB=224;DPRA=0.278049;EPP=11.6962;EPPR=480.734;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=163;QR=8874;RO=220;RPL=0;RPP=11.6962;RPPR=480.734;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=220;SRP=480.734;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:55:55,0:55:2209:0:0:0,-16.5566,-198.97 0/0:100:100,0:100:4053:0:0:0,-30.103,-364.717 0/0:50:50,0:50:2009:0:0:0,-15.0515,-180.998 0/1:19:15,4:15:603:4:163:-9.33886,0,-48.8861 dDocent_Contig_7576 7 . T A 696.209 . AB=0.0571429;ABP=62.6327;AC=2;AF=0.25;AN=8;AO=2;CIGAR=2M1X1M3X6M3D2M4I2M;DP=163;DPB=164.3;DPRA=0;EPP=7.35324;EPPR=72.4974;GTI=0;LEN=1;MEANALT=10;MQM=33;MQMR=60;NS=4;NUMALT=3;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=66;QR=1237;RO=32;RPL=0;RPP=7.35324;RPPR=72.4974;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:15:6,1,0,1:6:232:1,0,1:27,0,27:-0.0588168,0,-18.8434,-1.865,-19.1444,-21.0009,0,-17.2882,-19.1444,-18.8434 0|0:35:5,4,2,12:5:199:4,2,12:108,66,322:-20.6914,-14.7637,-29.9702,-17.3964,-26.376,-33.2042,0,-8.99342,-11.6203,-12.8059 0|0:95:15,14,0,27:15:571:14,0,27:378,0,717:-44.9259,-23.4262,-66.0672,-49.4414,-70.2816,-96.2938,0,-20.853,-46.8585,-38.7307 0|1:18:6,6,0,1:6:235:6,0,1:162,0,27:-9.39897,0,-17.6484,-11.2052,-19.4545,-30.5981,-9.34176,-17.598,-28.7405,-28.4395 dDocent_Contig_7578 7 . T C 128.388 . AB=0.297297;ABP=16.2152;AC=1;AF=0.125;AN=8;AO=15;CIGAR=2X;DP=152;DPB=152;DPRA=1.01042;EPP=35.5824;EPPR=276.616;GTI=0;LEN=1;MEANALT=2;MQM=26.6667;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0.984127;PAO=0;PQA=0;PQR=0;PRO=0;QA=580;QR=4827;RO=126;RPL=0;RPP=35.5824;RPPR=276.616;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=126;SRP=276.616;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:48:46,0,0:46:1767:0,0:0,0:0,-13.8474,-159.084,-13.8474,-159.084,-159.084 0|0:60:49,4,6:49:1868:4,6:155,233:0,-5.79927,-158.015,-8.53967,-152.959,-160.057 0|1:37:26,11,0:26:1001:11,0:425,0:-14.5319,0,-79.2635,-22.3586,-82.5749,-104.639 0|0:7:5,0,2:5:191:0,2:0,78:-0.739615,-2.24476,-18.082,0,-16.0533,-15.4512 dDocent_Contig_7579 103 . T G 379.808 . AB=0.348837;ABP=11.5447;AC=3;AF=0.375;AN=8;AO=15;CIGAR=1X;DP=51;DPB=51;DPRA=1.79167;EPP=35.5824;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=613;QR=1208;RO=36;RPL=0;RPP=35.5824;RPPR=81.1833;RPR=15;RUN=1;SAF=0;SAP=35.5824;SAR=15;SRF=0;SRP=81.1833;SRR=36;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:12,5:12:406:5:205:-13.7175,0,-31.7487 0/1:12:7,5:7:230:5:205:-15.2226,0,-17.4095 0/1:14:9,5:9:301:5:203:-14.4386,0,-23.2015 0/0:8:8,0:8:271:0:0:0,-2.40824,-24.7208 dDocent_Contig_7580 19 . G T 272.718 . AB=0.230769;ABP=43.9342;AC=4;AF=0.5;AN=8;AO=15;CIGAR=1X;DP=65;DPB=65;DPRA=0;EPP=35.5824;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=586;QR=1958;RO=50;RPL=0;RPP=35.5824;RPPR=111.584;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:21,6:21:835:6:242:-14.0297,0,-67.3345 0/1:23:19,4:19:734:4:157:-7.5842,0,-59.457 0/1:10:7,3:7:275:3:106:-6.87521,0,-22.1071 0/1:5:3,2:3:114:2:81:-6.18058,0,-9.12707 dDocent_Contig_7581 34 . T C 1218.76 . AB=0.525;ABP=3.44459;AC=4;AF=0.5;AN=8;AO=42;CIGAR=1X;DP=80;DPB=80;DPRA=0;EPP=94.2121;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1688;QR=1501;RO=38;RPL=0;RPP=94.2121;RPPR=85.5263;RPR=42;RUN=1;SAF=42;SAP=94.2121;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:37:11,26:11:431:26:1046:-83.2914,0,-28.0023 0/1:15:13,2:13:528:2:82:-3.26423,0,-43.3511 0/1:16:8,8:8:298:8:318:-24.1684,0,-22.3453 0/1:12:6,6:6:244:6:242:-18.5446,0,-18.7265 dDocent_Contig_7582 20 . T C 419.591 . AB=0.355556;ABP=11.1654;AC=2;AF=0.25;AN=8;AO=16;CIGAR=1X;DP=77;DPB=77;DPRA=1.40625;EPP=37.7539;EPPR=135.47;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=646;QR=2430;RO=61;RPL=0;RPP=37.7539;RPPR=135.47;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=61;SRP=135.47;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:26,3:26:1040:3:122:-2.64262,0,-85.1645 0/0:17:17,0:17:678:0:0:0,-5.11751,-61.3493 0/0:15:15,0:15:603:0:0:0,-4.51545,-54.6084 0/1:16:3,13:3:109:13:524:-42.6903,0,-5.34883 dDocent_Contig_7583 32 . C G 1220.37 . AB=0.39823;ABP=13.1759;AC=3;AF=0.375;AN=8;AO=45;CIGAR=1X;DP=124;DPB=124;DPRA=3.42424;EPP=100.727;EPPR=174.557;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1783;QR=3182;RO=79;RPL=0;RPP=100.727;RPPR=174.557;RPR=45;RUN=1;SAF=45;SAP=100.727;SAR=0;SRF=79;SRP=174.557;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:34:10,24:10:404:24:947:-75.2859,0,-26.4854 0/1:66:47,19:47:1899:19:764:-49.2134,0,-151.237 0/0:11:11,0:11:436:0:0:0,-3.31133,-39.5907 0/1:13:11,2:11:443:2:72:-2.92252,0,-36.3114 dDocent_Contig_7584 32 . T G 558.1 . AB=0.428571;ABP=5.18177;AC=2;AF=0.25;AN=8;AO=23;CIGAR=1M5D1M1X2M2X1M1X2M3D2X1M1X2M1X1M1X;DP=86;DPB=79.4286;DPRA=9.22222;EPP=52.9542;EPPR=137.642;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.967742;PAO=0;PQA=0;PQR=0;PRO=0;QA=895;QR=2440;RO=62;RPL=0;RPP=52.9542;RPPR=137.642;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:34:32,2:32:1261:2:80:0,-2.64323,-106.179 0|1:38:21,17:21:823:17:662:-48.4745,0,-62.9523 0|1:11:6,4:6:239:4:153:-10.7333,0,-18.4757 0|0:3:3,0:3:117:0:0:0,-0.90309,-10.9102 dDocent_Contig_7585 107 . N C 168.269 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=7;CIGAR=1X;DP=7;DPB=7;DPRA=0;EPP=18.2106;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=30.8571;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=0.142857;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=228;QR=0;RO=0;RPL=0;RPP=18.2106;RPPR=0;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1:0,1:0:0:1:33:-2.16701,-0.30103,0 ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:99:-9.0129,-0.90309,0 1/1:3:0,3:0:0:3:96:-5.16782,-0.90309,0 dDocent_Contig_7586 43 . G A 119.747 . AB=0;ABP=0;AC=2;AF=0.25;AN=8;AO=3;CIGAR=1X;DP=47;DPB=47;DPRA=0.204545;EPP=9.52472;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.38813e-21;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=1741;RO=44;RPL=0;RPP=9.52472;RPPR=98.5551;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:122:-11.3725,-0.90309,0 0/0:17:17,0:17:670:0:0:0,-5.11751,-60.6292 0/0:18:18,0:18:722:0:0:0,-5.41854,-65.3053 0/0:9:9,0:9:349:0:0:0,-2.70927,-31.7611 dDocent_Contig_7587 48 . T A 619.139 . AB=0.316456;ABP=26.1269;AC=3;AF=0.375;AN=8;AO=25;CIGAR=1X;DP=119;DPB=119;DPRA=0.658333;EPP=57.2971;EPPR=207.129;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1000;QR=3688;RO=94;RPL=0;RPP=57.2971;RPPR=207.129;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=94;SRP=207.129;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:24,7:24:935:7:277:-15.9652,0,-75.1171 0/0:40:40,0:40:1576:0:0:0,-12.0412,-142.072 0/1:36:22,14:22:866:14:563:-40.1755,0,-67.4091 0/1:12:8,4:8:311:4:160:-11.1711,0,-24.7357 dDocent_Contig_7588 95 . C A 202.123 . AB=0.17094;ABP=113.05;AC=3;AF=0.375;AN=8;AO=23;CIGAR=1X;DP=164;DPB=164;DPRA=0;EPP=52.9542;EPPR=309.188;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=767;QR=4680;RO=141;RPL=23;RPP=52.9542;RPPR=309.188;RPR=0;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=141;SRP=309.188;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:49:41,8:41:1351:8:267:-9.60601,0,-107.132 0/0:47:44,3:44:1472:3:102:0,-4.63146,-123.256 0/1:60:53,7:53:1759:7:236:-3.50874,0,-140.533 0/1:8:3,5:3:98:5:162:-12.4921,0,-6.73613 dDocent_Contig_7589 11 . A G 117.638 . AB=0.2;ABP=30.3709;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=99;DPB=99;DPRA=1.67568;EPP=20.3821;EPPR=200.614;GTI=0;LEN=1;MEANALT=1;MQM=41.5;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=319;QR=3584;RO=91;RPL=0;RPP=20.3821;RPPR=200.614;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=91;SRP=200.614;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:27:26,1:26:1041:1:41:0,-4.38169,-90.2373 0/1:35:28,7:28:1101:7:278:-13.4627,0,-88.8364 0/0:16:16,0:16:625:0:0:0,-4.81648,-56.5739 0/0:21:21,0:21:817:0:0:0,-6.32163,-73.8417 dDocent_Contig_7590 9 . T G 556.179 . AB=0.232558;ABP=29.7245;AC=3;AF=0.375;AN=8;AO=10;CIGAR=3X3M1X1M1I1M2X;DP=63;DPB=63.9091;DPRA=0;EPP=24.725;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1.66667;MQM=39;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.6;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=388;QR=1437;RO=37;RPL=0;RPP=24.725;RPPR=83.3548;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:20:6,0,14:6:238:0,14:0,547:-43.545,-45.3512,-64.9451,0,-19.9883,-15.7739 0|1:32:26,5,1:26:1001:5,1:199,41:-8.50908,0,-80.6547,-12.9496,-78.7748,-94.8222 1|0:2:0,1,1:0:0:1,1:29,41:-4.69717,-3.79354,-3.49251,-1.18254,0,-0.881512 0|1:9:5,4,0:5:198:4,0:160,0:-5.13704,0,-15.4885,-6.64219,-16.6926,-23.0412 dDocent_Contig_7591 23 . T C 409.067 . AB=0.224719;ABP=61.5913;AC=2;AF=0.25;AN=8;AO=20;CIGAR=1X;DP=105;DPB=105;DPRA=5.5625;EPP=46.4397;EPPR=187.585;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=0.988235;PAO=0;PQA=0;PQR=0;PRO=0;QA=782;QR=3304;RO=85;RPL=0;RPP=46.4397;RPPR=187.585;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=85;SRP=187.585;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:55:40,15:40:1563:15:583:-36.2511,0,-124.364 0/1:34:29,5:29:1143:5:199:-8.0535,0,-92.9211 0/0:10:10,0:10:367:0:0:0,-3.0103,-33.3628 0/0:6:6,0:6:231:0:0:0,-1.80618,-21.1548 dDocent_Contig_7592 178 . A G 80.8509 . AB=0.235294;ABP=13.3567;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=50;DPB=50;DPRA=2.33333;EPP=16.0391;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.931818;PAO=0;PQA=0;PQR=0;PRO=0;QA=208;QR=1771;RO=44;RPL=6;RPP=16.0391;RPPR=98.5551;RPR=0;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=98.5551;SRR=44;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:13,4:13:530:4:158:-9.48276,0,-42.9285 0/0:18:16,2:16:646:2:50:0,-0.673704,-53.7284 0/0:10:10,0:10:401:0:0:0,-3.0103,-36.4467 0/0:5:5,0:5:194:0:0:0,-1.50515,-17.8302 dDocent_Contig_7593 53 . A G 748.802 . AB=0.253731;ABP=38.3048;AC=4;AF=0.5;AN=8;AO=17;CIGAR=1X1M;DP=67;DPB=67;DPRA=0;EPP=39.9253;EPPR=68.1545;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=680;QR=1179;RO=30;RPL=17;RPP=39.9253;RPPR=68.1545;RPR=0;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:21:9,8,4:9:363:8,4:309,161:-22.6538,0,-27.5146,-12.0884,-16.6538,-40.8156 0|1:19:6,2,10:6:240:2,10:81,405:-31.5907,-26.7176,-45.8839,0,-13.0874,-16.7574 0|1:19:8,9,2:8:302:9,2:346,75:-26.0014,0,-22.0412,-22.2685,-18.6081,-46.4117 0|1:8:7,0,1:7:274:0,1:0,39:-1.48832,-3.59553,-26.1247,0,-22.919,-22.618 dDocent_Contig_7594 44 . T C 110.245 . AB=0.238095;ABP=15.5221;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=61;DPB=61;DPRA=1.575;EPP=13.8677;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=0.982143;PAO=0;PQA=0;PQR=0;PRO=0;QA=204;QR=2238;RO=56;RPL=0;RPP=13.8677;RPPR=124.613;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:16,5:16:648:5:204:-12.4224,0,-52.3316 0/0:12:12,0:12:487:0:0:0,-3.61236,-44.1817 0/0:16:16,0:16:640:0:0:0,-4.81648,-57.9334 0/0:12:12,0:12:463:0:0:0,-3.61236,-42.0078 dDocent_Contig_7595 68 . C T 192.031 . AB=0.212766;ABP=36.6912;AC=2;AF=0.25;AN=8;AO=12;CIGAR=1X;DP=76;DPB=76;DPRA=12.3333;EPP=29.068;EPPR=141.985;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=470;QR=2455;RO=64;RPL=12;RPP=29.068;RPPR=141.985;RPR=0;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=64;SRP=141.985;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:2:2,0:2:68:0:0:0,-0.60206,-6.45641 0/1:21:19,2:19:735:2:79:-1.176,0,-60.1466 0/0:27:25,2:25:932:2:76:0,-0.914273,-76.9589 0/1:26:18,8:18:720:8:315:-20.8857,0,-57.3003 dDocent_Contig_7596 9 . T C 59.0008 . AB=0.272727;ABP=7.94546;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=64;DPB=64;DPRA=0.622642;EPP=9.52472;EPPR=135.47;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=117;QR=2344;RO=61;RPL=0;RPP=9.52472;RPPR=135.47;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=61;SRP=135.47;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:24:24,0:24:920:0:0:0,-7.22472,-83.1162 0/0:20:20,0:20:764:0:0:0,-6.0206,-69.0878 0/0:9:9,0:9:349:0:0:0,-2.70927,-31.7708 0/1:11:8,3:8:311:3:117:-7.59905,0,-25.043 dDocent_Contig_7597 9 . T A 51.9257 . AB=0.153846;ABP=30.0702;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=129;DPB=129;DPRA=1.26316;EPP=13.8677;EPPR=272.273;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.556452;PAO=0;PQA=0;PQR=0;PRO=0;QA=195;QR=4743;RO=124;RPL=0;RPP=13.8677;RPPR=272.273;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=124;SRP=272.273;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:22,4:22:850:4:156:-6.59051,0,-68.9955 0/0:43:43,0:43:1645:0:0:0,-12.9443,-148.314 0/0:46:45,1:45:1705:1:39:0,-9.95081,-149.809 0/0:14:14,0:14:543:0:0:0,-4.21442,-49.216 dDocent_Contig_7598 87 . T G 1218.74 . AB=0.333333;ABP=45.7159;AC=4;AF=0.5;AN=8;AO=59;CIGAR=1X;DP=177;DPB=177;DPRA=0;EPP=131.127;EPPR=259.244;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2014;QR=4168;RO=118;RPL=59;RPP=131.127;RPPR=259.244;RPR=0;RUN=1;SAF=59;SAP=131.127;SAR=0;SRF=118;SRP=259.244;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:83:50,33:50:1762:33:1135:-77.472,0,-133.874 0/1:61:46,15:46:1623:15:507:-27.5894,0,-127.992 0/1:20:15,5:15:531:5:169:-9.52204,0,-42.1024 0/1:13:7,6:7:252:6:203:-14.6887,0,-19.1154 dDocent_Contig_7599 109 . A G 252.6 . AB=0.666667;ABP=6.62942;AC=1;AF=0.125;AN=8;AO=10;CIGAR=1X;DP=105;DPB=105;DPRA=0.5;EPP=24.725;EPPR=209.3;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=346;QR=2917;RO=95;RPL=0;RPP=24.725;RPPR=209.3;RPR=10;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=209.3;SRR=95;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:34:34,0:34:1056:0:0:0,-10.235,-95.3268 0/1:15:5,10:5:137:10:346:-26.959,0,-8.08565 0/0:26:26,0:26:840:0:0:0,-7.82678,-75.9022 0/0:30:30,0:30:884:0:0:0,-9.0309,-79.8353 dDocent_Contig_7600 60 . C T 56.0905 . AB=0.111111;ABP=85.7675;AC=2;AF=0.25;AN=8;AO=8;CIGAR=1X;DP=117;DPB=117;DPRA=1.7193;EPP=20.3821;EPPR=239.701;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.990826;PAO=0;PQA=0;PQR=0;PRO=0;QA=326;QR=4263;RO=109;RPL=8;RPP=20.3821;RPPR=239.701;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=109;SRP=239.701;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:39:34,5:34:1315:5:204:-7.00386,0,-106.862 0/0:35:34,1:34:1364:1:41:0,-6.44148,-118.923 0/1:24:22,2:22:869:2:81:-0.461014,0,-71.2858 0/0:19:19,0:19:715:0:0:0,-5.71957,-64.6648 dDocent_Contig_7601 56 . T A 825.304 . AB=0.234568;ABP=102.147;AC=4;AF=0.5;AN=8;AO=38;CIGAR=1X;DP=162;DPB=162;DPRA=0;EPP=85.5263;EPPR=255.181;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.935484;PAO=0;PQA=0;PQR=0;PRO=0;QA=1525;QR=4997;RO=124;RPL=38;RPP=85.5263;RPPR=272.273;RPR=0;RUN=1;SAF=38;SAP=85.5263;SAR=0;SRF=122;SRP=255.181;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:49:32,17:32:1293:17:674:-46.2344,0,-101.883 0/1:48:36,12:36:1440:12:488:-29.822,0,-115.402 0/1:54:48,6:48:1937:6:241:-5.81068,0,-158.27 0/1:11:8,3:8:327:3:122:-8.06116,0,-26.4888 dDocent_Contig_7603 143 . A G 424.652 . AB=0.414634;ABP=5.60547;AC=3;AF=0.375;AN=8;AO=17;CIGAR=1X;DP=50;DPB=50;DPRA=1.51852;EPP=39.9253;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=657;QR=1326;RO=33;RPL=0;RPP=39.9253;RPPR=74.6689;RPR=17;RUN=1;SAF=0;SAP=39.9253;SAR=17;SRF=0;SRP=74.6689;SRR=33;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:9:9,0:9:364:0:0:0,-2.70927,-33.1244 0/1:25:15,10:15:596:10:391:-28.0162,0,-46.4478 0/1:6:3,3:3:123:3:104:-7.89028,0,-9.65861 0/1:10:6,4:6:243:4:162:-11.9567,0,-19.2373 dDocent_Contig_7604 10 . C T 97.7388 . AB=0.363636;ABP=4.78696;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1M1I1M1X;DP=61;DPB=62.6667;DPRA=0.794118;EPP=13.8677;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=200;QR=2143;RO=56;RPL=0;RPP=13.8677;RPPR=124.613;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:25:25,0:25:948:0:0:0,-7.52575,-85.6317 0|1:11:7,4:7:273:4:160:-11.4727,0,-21.6267 0|0:16:15,1:15:574:1:40:0,-0.820801,-48.0057 0|0:9:9,0:9:348:0:0:0,-2.70927,-31.6801 dDocent_Contig_7605 28 . T C 1500.94 . AB=0.25;ABP=111.584;AC=4;AF=0.5;AN=8;AO=50;CIGAR=1M1X;DP=200;DPB=210;DPRA=0;EPP=111.584;EPPR=285.302;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2019;QR=5118;RO=130;RPL=0;RPP=111.584;RPPR=285.302;RPR=50;RUN=1;SAF=50;SAP=111.584;SAR=0;SRF=130;SRP=285.302;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:82:69,11,2:69:2737:11,2:442,82:-15.645,0,-221.969,-29.6467,-218.512,-254.333 0|1:67:25,5,37:25:993:5,37:181,1498:-116.029,-108.793,-189.031,0,-67.0145,-70.6368 0|1:31:20,2,9:20:767:2,9:80,361:-23.7219,-23.1525,-85.4855,0,-56.3405,-60.2229 0|1:20:16,2,2:16:621:2,2:80,78:-1.77864,0,-50.4133,-0.18849,-44.6035,-50.5929 dDocent_Contig_7606 18 . C T 2441.24 . AB=0.0544413;ABP=604.807;AC=0;AF=0;AN=8;AO=19;CIGAR=2M2X3M2I3M;DP=349;DPB=358.6;DPRA=0;EPP=44.2683;EPPR=335.246;GTI=0;LEN=1;MEANALT=7;MQM=36;MQMR=59.7974;NS=4;NUMALT=6;ODDS=0;PAIRED=1;PAIREDR=0.901961;PAO=0;PQA=0;PQR=0;PRO=0;QA=683;QR=6068;RO=153;RPL=0;RPP=44.2683;RPPR=335.246;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=153;SRP=335.246;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:95:28,18,0,2,13,0,28:28:1120:18,0,2,13,0,28:337,0,61,468,0,922:-63.9645,-51.9947,-138.867,-72.3933,-144.286,-164.691,-67.8829,-139.777,-160.181,-159.579,-37.6944,-109.604,-130.003,-125.493,-126.089,-72.3933,-144.286,-164.691,-160.181,-130.003,-164.691,0,-71.9409,-92.3274,-87.818,-57.6364,-92.3274,-83.8985 0|0:123:63,7,8,0,3,10,29:63:2485:7,8,0,3,10,29:80,286,0,108,279,1110:-71.1138,-86.8114,-288.168,-68.9116,-269.114,-269.985,-90.0787,-290.276,-272.394,-293.557,-82.0735,-282.272,-264.39,-285.553,-284.65,-70.6737,-270.869,-252.986,-274.148,-266.145,-271.138,0,-200.255,-182.369,-203.532,-195.528,-184.126,-194.802 0|0:90:37,3,0,10,2,0,30:37:1466:3,0,10,2,0,30:36,0,381,72,0,1101:-77.5259,-87.115,-206.903,-88.664,-207.806,-209.36,-59.7296,-178.881,-180.434,-177.423,-83.3272,-202.47,-204.024,-175.098,-203.422,-88.664,-207.806,-209.36,-180.434,-204.024,-209.36,0,-119.201,-120.75,-91.8221,-115.414,-120.75,-111.719 0|0:41:25,0,0,1,1,0,14:25:997:0,0,1,1,0,14:0,0,39,35,0,563:-38.9177,-46.4434,-128.552,-46.4434,-128.552,-128.552,-43.5076,-125.615,-125.615,-125.314,-43.8275,-125.933,-125.933,-122.996,-125.632,-46.4434,-128.552,-128.552,-125.615,-125.933,-128.552,0,-82.1579,-82.1579,-79.2212,-79.5401,-82.1579,-77.9435 dDocent_Contig_7607 209 . N G 74.0456 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=78;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:78:-7.40347,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_7608 98 . N A 29718.8 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=1168;CIGAR=1X;DP=1183;DPB=1183;DPRA=0;EPP=2539.29;EPPR=0;GTI=0;LEN=1;MEANALT=1.75;MQM=35.7192;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=0.168664;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=39527;QR=0;RO=0;RPL=1168;RPP=2539.29;RPPR=0;RPR=0;RUN=1;SAF=1168;SAP=2539.29;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:336:0,331:0:0:331:11183:-841.659,-99.6409,0 1/1:370:0,370:0:0:370:12583:-920.475,-111.381,0 1/1:332:0,326:0:0:326:11020:-847.911,-98.1358,0 1/1:145:0,141:0:0:141:4741:-361.132,-42.4452,0 dDocent_Contig_7609 13 . C T 40.6984 . AB=0.166667;ABP=20.3821;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=127;DPB=127;DPRA=0.495413;EPP=9.52472;EPPR=272.273;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.991935;PAO=0;PQA=0;PQR=0;PRO=0;QA=120;QR=4950;RO=124;RPL=0;RPP=9.52472;RPPR=272.273;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=124;SRP=272.273;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:49:49,0:49:1962:0:0:0,-14.7505,-176.763 0/0:33:33,0:33:1308:0:0:0,-9.93399,-117.972 0/0:27:27,0:27:1088:0:0:0,-8.12781,-98.2039 0/1:18:15,3:15:592:3:120:-5.76877,0,-48.1972 dDocent_Contig_7610 18 . A G 110.01 . AB=0.3125;ABP=7.89611;AC=2;AF=0.25;AN=8;AO=5;CIGAR=1X;DP=35;DPB=35;DPRA=0.842105;EPP=13.8677;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=204;QR=1213;RO=30;RPL=0;RPP=13.8677;RPPR=68.1545;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:12:12,0:12:490:0:0:0,-3.61236,-44.4511 0/1:8:4,4:4:154:4:163:-12.6502,0,-11.8221 0/1:8:7,1:7:285:1:41:-1.68633,0,-23.616 0/0:7:7,0:7:284:0:0:0,-2.10721,-25.934 dDocent_Contig_7611 21 . C T 87.2796 . AB=0.131148;ABP=75.0961;AC=2;AF=0.25;AN=8;AO=8;CIGAR=1X;DP=125;DPB=125;DPRA=0.953125;EPP=20.3821;EPPR=257.073;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=325;QR=4681;RO=117;RPL=0;RPP=20.3821;RPPR=257.073;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=117;SRP=257.073;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:41:35,6:35:1401:6:245:-10.0872,0,-114 0/0:55:55,0:55:2215:0:0:0,-16.5566,-199.513 0/1:20:18,2:18:713:2:80:-1.57098,0,-58.4697 0/0:9:9,0:9:352:0:0:0,-2.70927,-32.0324 dDocent_Contig_7612 118 . A G 272.975 . AB=0.393939;ABP=6.23461;AC=3;AF=0.375;AN=8;AO=13;CIGAR=1X;DP=40;DPB=40;DPRA=1.57143;EPP=31.2394;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=462;QR=980;RO=27;RPL=0;RPP=31.2394;RPPR=61.6401;RPR=13;RUN=1;SAF=0;SAP=31.2394;SAR=13;SRF=0;SRP=61.6401;SRR=27;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:7:5,2:5:182:2:72:-4.72951,0,-14.628 0/1:11:5,6:5:181:6:215:-16.3878,0,-13.3322 0/1:15:10,5:10:365:5:175:-11.5779,0,-28.6818 0/0:7:7,0:7:252:0:0:0,-2.10721,-23.0289 dDocent_Contig_7613 9 . T A 1348.67 . AB=0.638889;ABP=15.074;AC=2;AF=0.25;AN=8;AO=49;CIGAR=1X;DP=115;DPB=115;DPRA=9.25;EPP=109.412;EPPR=144.156;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1885;QR=2513;RO=65;RPL=0;RPP=109.412;RPPR=144.156;RPR=49;RUN=1;SAF=49;SAP=109.412;SAR=0;SRF=65;SRP=144.156;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:20,11:20:773:11:421:-28.9107,0,-60.566 0/1:41:6,35:6:234:35:1349:-109.354,0,-9.08887 0/0:39:35,3:35:1351:3:115:0,-0.885003,-111.211 0/0:4:4,0:4:155:0:0:0,-1.20412,-14.3254 dDocent_Contig_7615 18 . A G 82.4475 . AB=0.185185;ABP=26.2531;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=64;DPB=64;DPRA=2.7;EPP=16.0391;EPPR=128.956;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=214;QR=2306;RO=58;RPL=0;RPP=16.0391;RPPR=128.956;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:27:26,1:26:1031:1:16:0,-6.52783,-91.4822 0/1:27:22,5:22:869:5:198:-10.0687,0,-70.3953 0/0:10:10,0:10:406:0:0:0,-3.0103,-36.9006 ./.:.:.:.:.:.:.:. dDocent_Contig_7616 12 . T C 1108.03 . AB=0.481481;ABP=3.25157;AC=4;AF=0.5;AN=8;AO=39;CIGAR=1X;DP=81;DPB=81;DPRA=0;EPP=87.6977;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1553;QR=1628;RO=41;RPL=0;RPP=87.6977;RPPR=92.0407;RPR=39;RUN=1;SAF=39;SAP=87.6977;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:10,1:10:394:1:38:-0.485939,0,-32.5061 0/1:20:13,6:13:512:6:239:-15.7551,0,-40.2911 0/1:24:10,14:10:403:14:543:-41.9755,0,-29.4048 0/1:26:8,18:8:319:18:733:-58.4667,0,-21.2503 dDocent_Contig_7617 32 . C A 97.471 . AB=0.333333;ABP=5.9056;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=54;DPB=54;DPRA=0.857143;EPP=11.6962;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=0.98;PAO=0;PQA=0;PQR=0;PRO=0;QA=163;QR=2012;RO=50;RPL=0;RPP=11.6962;RPPR=111.584;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:14:14,0:14:566:0:0:0,-4.21442,-51.2828 0/0:20:20,0:20:800:0:0:0,-6.0206,-72.3113 0/0:8:8,0:8:324:0:0:0,-2.40824,-29.5292 0/1:12:8,4:8:322:4:163:-11.4461,0,-25.7349 dDocent_Contig_7618 25 . T C 514.222 . AB=0.164251;ABP=205.692;AC=4;AF=0.5;AN=8;AO=34;CIGAR=1X;DP=207;DPB=207;DPRA=0;EPP=76.8404;EPPR=378.675;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=0.529412;PAIREDR=0.456647;PAO=0;PQA=0;PQR=0;PRO=0;QA=1326;QR=6904;RO=173;RPL=0;RPP=76.8404;RPPR=378.675;RPR=34;RUN=1;SAF=34;SAP=76.8404;SAR=0;SRF=173;SRP=378.675;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:68:62,6:62:2475:6:242:-1.68708,0,-202.425 0/1:53:42,11:42:1671:11:401:-20.4578,0,-134.652 0/1:44:39,5:39:1559:5:203:-5.40753,0,-127.304 0/1:42:30,12:30:1199:12:480:-30.9049,0,-95.539 dDocent_Contig_7619 68 . A T 154.453 . AB=0.204545;ABP=36.372;AC=2;AF=0.25;AN=8;AO=11;CIGAR=1X;DP=96;DPB=96;DPRA=0.851852;EPP=26.8965;EPPR=187.585;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.636364;PAIREDR=0.611765;PAO=0;PQA=0;PQR=0;PRO=0;QA=410;QR=3225;RO=85;RPL=11;RPP=26.8965;RPPR=187.585;RPR=0;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=85;SRP=187.585;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:27:27,0:27:1015:0:0:0,-8.12781,-91.6551 0/0:25:23,2:23:872:2:75:0,-0.405652,-71.6776 0/1:34:31,3:31:1182:3:115:-0.489875,0,-96.4405 0/1:10:4,6:4:156:6:220:-17.1405,0,-11.407 dDocent_Contig_7621 20 . T C 755.369 . AB=0.595238;ABP=6.31921;AC=1;AF=0.125;AN=8;AO=30;CIGAR=1X;DP=135;DPB=135;DPRA=4.16667;EPP=68.1545;EPPR=231.015;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.9;PAIREDR=0.952381;PAO=0;PQA=0;PQR=0;PRO=0;QA=1161;QR=4137;RO=105;RPL=0;RPP=68.1545;RPPR=231.015;RPR=30;RUN=1;SAF=30;SAP=68.1545;SAR=0;SRF=105;SRP=231.015;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:42:17,25:17:678:25:992:-76.9349,0,-48.7075 0/0:45:42,3:42:1666:3:87:0,-5.43303,-142.056 0/0:38:36,2:36:1396:2:82:0,-3.65946,-118.117 0/0:10:10,0:10:397:0:0:0,-3.0103,-36.0865 dDocent_Contig_7622 25 . T A 307.73 . AB=0.315789;ABP=14.2105;AC=1;AF=0.125;AN=8;AO=12;CIGAR=1X;DP=61;DPB=61;DPRA=4.95652;EPP=29.068;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=484;QR=1936;RO=49;RPL=0;RPP=29.068;RPPR=109.412;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:7:7,0:7:280:0:0:0,-2.10721,-25.5707 0/1:38:26,12:26:1046:12:484:-32.4719,0,-82.9902 0/0:8:8,0:8:313:0:0:0,-2.40824,-28.5293 0/0:8:8,0:8:297:0:0:0,-2.40824,-27.0725 dDocent_Contig_7623 25 . A G 539.368 . AB=0.513514;ABP=3.06899;AC=1;AF=0.125;AN=8;AO=19;CIGAR=1X3M1X;DP=88;DPB=88;DPRA=2.17647;EPP=44.2683;EPPR=152.842;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=735;QR=2657;RO=69;RPL=0;RPP=44.2683;RPPR=152.842;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=69;SRP=152.842;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:37:18,19:18:699:19:735:-55.3347,0,-52.1025 0|0:29:29,0:29:1136:0:0:0,-8.72987,-102.532 0|0:14:14,0:14:531:0:0:0,-4.21442,-48.1275 0|0:8:8,0:8:291:0:0:0,-2.40824,-26.5307 dDocent_Contig_7624 140 . A G 105.293 . AB=0.186047;ABP=39.8243;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=109;DPB=109;DPRA=1.95455;EPP=20.3821;EPPR=222.329;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=276;QR=3551;RO=101;RPL=0;RPP=20.3821;RPPR=222.329;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=222.329;SRR=101;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:31:31,0:31:1085:0:0:0,-9.33193,-97.9512 0/1:43:35,8:35:1239:8:276:-12.2283,0,-98.8638 0/0:20:20,0:20:690:0:0:0,-6.0206,-62.4146 0/0:15:15,0:15:537:0:0:0,-4.51545,-48.6651 dDocent_Contig_7625 10 . A C 675.472 . AB=0.0263158;ABP=77.0689;AC=0;AF=0;AN=8;AO=10;CIGAR=1X1M4X1M2X5M2X1M1X;DP=120;DPB=120;DPRA=0;EPP=24.725;EPPR=163.699;GTI=0;LEN=1;MEANALT=2.66667;MQM=5;MQMR=60;NS=4;NUMALT=4;ODDS=6.93889e-18;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=50;QR=2828;RO=74;RPL=0;RPP=24.725;RPPR=163.699;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=74;SRP=163.699;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:40:30,3,7,0,0:30:1147:3,7,0,0:42,35,0,0:0,-6.91817,-100.416,-9.47207,-101.769,-101.725,-9.0309,-101.319,-103.832,-103.391,-9.0309,-101.319,-103.832,-103.391,-103.391 0|0:38:14,6,1,3,14:14:537:6,1,3,14:105,5,48,570:-42.9684,-41.1848,-83.4731,-47.249,-85.3447,-91.0538,-44.5868,-82.684,-88.7538,-87.7868,0,-38.2211,-44.2891,-41.6256,-40.0092 0|0:24:21,0,2,0,0:21:800:0,2,0,0:0,10,0,0:0,-6.32163,-72.1397,-6.68572,-72.2786,-71.6766,-6.32163,-72.1397,-72.2786,-72.1397,-6.32163,-72.1397,-72.2786,-72.1397,-72.1397 0|0:18:9,0,0,0,9:9:344:0,0,0,9:0,0,0,367:-27.9767,-30.686,-58.8999,-30.686,-58.8999,-58.8999,-30.686,-58.8999,-58.8999,-58.8999,0,-28.6085,-28.6085,-28.6085,-25.8992 dDocent_Contig_7626 19 . T A 88.038 . AB=0.266667;ABP=10.1038;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=46;DPB=46;DPRA=1.45161;EPP=11.6962;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=55;MQMR=58.3333;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.857143;PAO=0;PQA=0;PQR=0;PRO=0;QA=163;QR=1661;RO=42;RPL=0;RPP=11.6962;RPPR=94.2121;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:20:20,0:20:787:0:0:0,-6.0206,-70.9474 0/1:15:11,4:11:440:4:163:-10.5025,0,-35.4357 0/0:2:2,0:2:69:0:0:0,-0.60206,-6.47954 0/0:9:9,0:9:365:0:0:0,-2.70927,-33.146 dDocent_Contig_7627 169 . G T 133.1 . AB=0.333333;ABP=7.35324;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=50;DPB=50;DPRA=1.6875;EPP=16.0391;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.886364;PAO=0;PQA=0;PQR=0;PRO=0;QA=223;QR=1697;RO=44;RPL=6;RPP=16.0391;RPPR=98.5551;RPR=0;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=98.5551;SRR=44;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:15:15,0:15:566:0:0:0,-4.51545,-51.2767 0/1:18:12,6:12:478:6:223:-15.009,0,-37.9533 0/0:10:10,0:10:382:0:0:0,-3.0103,-34.7332 0/0:7:7,0:7:271:0:0:0,-2.10721,-24.7547 dDocent_Contig_7628 26 . C A 154.715 . AB=0.146341;ABP=92.0936;AC=2;AF=0.25;AN=8;AO=13;CIGAR=1X;DP=130;DPB=130;DPRA=0.979798;EPP=31.2394;EPPR=257.073;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.965812;PAO=0;PQA=0;PQR=0;PRO=0;QA=509;QR=4676;RO=117;RPL=0;RPP=31.2394;RPPR=257.073;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=117;SRP=257.073;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:66:60,6:60:2401:6:228:-1.00883,0,-196.369 0/0:33:33,0:33:1333:0:0:0,-9.93399,-120.226 0/1:16:10,6:10:383:6:240:-17.1592,0,-29.9998 0/0:15:14,1:14:559:1:41:0,-0.420883,-46.5575 dDocent_Contig_7629 7 . T G 730.822 . AB=0.240506;ABP=95.4216;AC=3;AF=0.375;AN=8;AO=38;CIGAR=1X3M1X;DP=168;DPB=168;DPRA=5.26667;EPP=85.5263;EPPR=283.13;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.973684;PAIREDR=0.953488;PAO=0;PQA=0;PQR=0;PRO=0;QA=1375;QR=4974;RO=129;RPL=0;RPP=85.5263;RPPR=283.13;RPR=38;RUN=1;SAF=38;SAP=85.5263;SAR=0;SRF=129;SRP=283.13;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:56:31,24:31:1201:24:863:-61.0245,0,-91.43 0|1:70:59,11:59:2278:11:402:-15.4511,0,-184.163 0|1:32:29,3:29:1110:3:110:-0.627611,0,-90.5694 0|0:10:10,0:10:385:0:0:0,-3.0103,-35.0063 dDocent_Contig_7630 147 . C A 474.315 . AB=0.264368;ABP=44.9671;AC=4;AF=0.5;AN=8;AO=23;CIGAR=1X;DP=87;DPB=87;DPRA=0;EPP=52.9542;EPPR=141.985;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=884;QR=2476;RO=64;RPL=0;RPP=52.9542;RPPR=141.985;RPR=23;RUN=1;SAF=0;SAP=52.9542;SAR=23;SRF=0;SRP=141.985;SRR=64;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:22,9:22:852:9:355:-22.9805,0,-67.6679 0/1:18:13,5:13:508:5:190:-12.0465,0,-40.6474 0/1:24:18,6:18:684:6:224:-13.2928,0,-54.666 0/1:14:11,3:11:432:3:115:-6.50957,0,-35.0214 dDocent_Contig_7631 127 . G T 94.2095 . AB=0.333333;ABP=6.62942;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=98;DPB=98;DPRA=0.75;EPP=20.3821;EPPR=198.443;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=257;QR=2918;RO=90;RPL=0;RPP=20.3821;RPPR=198.443;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=198.443;SRR=90;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:27:24,3:24:790:3:87:0,-0.00996938,-63.2866 0/0:44:44,0:44:1415:0:0:0,-13.2453,-127.631 0/1:15:10,5:10:333:5:170:-11.1189,0,-25.7784 0/0:12:12,0:12:380:0:0:0,-3.61236,-34.5063 dDocent_Contig_7632 9 . T C 69.8818 . AB=0;ABP=0;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X2M;DP=114;DPB=114;DPRA=1.78571;EPP=9.52472;EPPR=233.186;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.981132;PAO=0;PQA=0;PQR=0;PRO=0;QA=117;QR=4154;RO=106;RPL=0;RPP=9.52472;RPPR=233.186;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=106;SRP=233.186;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:43:41,0,0:41:1587:0,0:0,0:0,-12.3422,-142.698,-12.3422,-142.698,-142.698 0|0:50:47,0,3:47:1861:0,3:0,117:0,-14.1484,-167.327,-4.14112,-157.71,-156.806 0|0:13:13,0,0:13:510:0,0:0,0:0,-3.91339,-46.2478,-3.91339,-46.2478,-46.2478 0|1:8:5,3,0:5:196:3,0:119,0:-8.68715,0,-15.6067,-10.1923,-16.5098,-26.3075 dDocent_Contig_7633 98 . N A 93.3091 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=100;QR=0;RO=0;RPL=3;RPP=9.52472;RPPR=0;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:100:-9.33037,-0.90309,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_7635 126 . G C 231.118 . AB=0.302326;ABP=17.6046;AC=3;AF=0.375;AN=8;AO=13;CIGAR=1X;DP=52;DPB=52;DPRA=1.59259;EPP=31.2394;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=40;MQMR=40;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=454;QR=1316;RO=39;RPL=0;RPP=31.2394;RPPR=87.6977;RPR=13;RUN=1;SAF=0;SAP=31.2394;SAR=13;SRF=0;SRP=87.6977;SRR=39;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:18,10:18:592:10:354:-22.6003,0,-43.7648 0/1:8:7,1:7:244:1:35:-0.972462,0,-19.1569 0/0:9:9,0:9:312:0:0:0,-2.70927,-27.5086 0/1:7:5,2:5:168:2:65:-3.89806,0,-12.8995 dDocent_Contig_7636 49 . T C 127.463 . AB=0.241379;ABP=19.8579;AC=2;AF=0.25;AN=8;AO=8;CIGAR=1X;DP=52;DPB=52;DPRA=1.83333;EPP=20.3821;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=308;QR=1727;RO=44;RPL=0;RPP=20.3821;RPPR=98.5551;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:14,5:14:550:5:186:-11.3744,0,-44.1206 0/0:15:14,1:14:535:1:40:0,-0.519771,-44.4759 0/1:10:8,2:8:321:2:82:-4.76938,0,-26.2473 0/0:8:8,0:8:321:0:0:0,-2.40824,-29.257 dDocent_Contig_7638 21 . G A 41.0041 . AB=0.132075;ABP=65.3275;AC=2;AF=0.25;AN=8;AO=7;CIGAR=1X;DP=94;DPB=94;DPRA=1.29268;EPP=18.2106;EPPR=189.757;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=253;QR=3403;RO=86;RPL=0;RPP=18.2106;RPPR=189.757;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=86;SRP=189.757;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:32:32,0:32:1289:0:0:0,-9.63296,-116.272 0/1:23:20,3:20:774:3:107:-3.05271,0,-63.0518 0/1:30:25,4:25:985:4:146:-4.43571,0,-79.8874 0/0:9:9,0:9:355:0:0:0,-2.70927,-32.3082 dDocent_Contig_7639 9 . T C 2339.68 . AB=0.459893;ABP=5.62303;AC=4;AF=0.5;AN=8;AO=86;CIGAR=1X;DP=187;DPB=187;DPRA=0;EPP=189.757;EPPR=222.329;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3293;QR=3897;RO=101;RPL=0;RPP=189.757;RPPR=222.329;RPR=86;RUN=1;SAF=86;SAP=189.757;SAR=0;SRF=101;SRP=222.329;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:48:34,14:34:1312:14:541:-34.5863,0,-103.918 0/1:47:24,23:24:930:23:890:-66.2707,0,-69.8682 0/1:48:33,15:33:1282:15:576:-37.7315,0,-101.22 0/1:44:10,34:10:373:34:1286:-102.777,0,-20.6746 dDocent_Contig_7640 9 . T C 69.2066 . AB=0.166667;ABP=31.9633;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=135;DPB=135;DPRA=0.483516;EPP=16.0391;EPPR=283.13;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=231;QR=4941;RO=129;RPL=0;RPP=16.0391;RPPR=283.13;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=129;SRP=283.13;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:42:42,0:42:1610:0:0:0,-12.6433,-145.166 0/0:49:49,0:49:1877:0:0:0,-14.7505,-169.178 0/1:30:25,5:25:960:5:192:-8.61911,0,-77.6834 0/0:14:13,1:13:494:1:39:0,-0.317855,-40.908 dDocent_Contig_7641 21 . A C 313.218 . AB=0.204819;ABP=65.826;AC=3;AF=0.375;AN=8;AO=18;CIGAR=1X;DP=114;DPB=114;DPRA=0;EPP=26.6552;EPPR=211.472;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.555556;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=708;QR=3752;RO=96;RPL=0;RPP=42.0968;RPPR=211.472;RPR=18;RUN=1;SAF=16;SAP=26.6552;SAR=2;SRF=96;SRP=211.472;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:31:30,1:30:1168:1:38:0,-5.53466,-101.608 0/1:30:27,3:27:1060:3:116:-1.78612,0,-86.661 0/1:38:26,12:26:1016:12:473:-31.4814,0,-80.2954 0/1:15:13,2:13:508:2:81:-3.17028,0,-41.5495 dDocent_Contig_7642 9 . T C 1780.59 . AB=0.420635;ABP=9.90386;AC=4;AF=0.5;AN=8;AO=53;CIGAR=1X7M;DP=126;DPB=127.5;DPRA=0;EPP=118.098;EPPR=87.6977;GTI=0;LEN=1;MEANALT=3.75;MQM=58.1321;MQMR=60;NS=4;NUMALT=5;ODDS=0;PAIRED=0.0566038;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2042;QR=1518;RO=39;RPL=0;RPP=118.098;RPPR=87.6977;RPR=53;RUN=1;SAF=53;SAP=118.098;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:35:11,0,2,0,2,20:11:427:0,2,0,2,20:0,80,0,70,760:-59.0075,-62.3189,-97.4055,-55.7268,-90.8142,-90.2122,-62.3189,-97.4055,-90.8142,-97.4055,-56.6281,-91.714,-85.1228,-91.714,-91.1119,0,-35.0934,-28.5009,-35.0934,-29.4053,-29.0728 0|1:38:19,4,1,0,5,9:19:736:4,1,0,5,9:155,39,0,149,351:-23.0832,-16.0638,-75.3349,-25.5955,-73.3326,-85.766,-28.8028,-76.539,-86.067,-89.2733,-16.9312,-64.6567,-74.1837,-77.3896,-75.8845,0,-47.7528,-57.2817,-60.4883,-48.6082,-57.779 0|1:30:3,1,1,0,2,22:3:117:1,1,0,2,22:40,40,0,78,853:-69.0861,-66.6935,-76.0103,-66.6935,-73.0157,-76.0103,-69.9892,-76.3114,-76.3114,-79.607,-63.5786,-69.9008,-69.9008,-73.1964,-72.5944,0,-6.32582,-6.32582,-9.62393,-3.21004,-3.00127 0|1:23:6,0,11,4,0,2:6:238:0,11,4,0,2:0,438,155,0,78:-34.2695,-36.0757,-55.6684,0,-19.5975,-16.2862,-23.3434,-42.9357,-6.86511,-41.7316,-36.0757,-55.6684,-19.5975,-42.9357,-55.6684,-29.8231,-49.4154,-13.3452,-36.6831,-49.4154,-48.8133 dDocent_Contig_7643 98 . N C 218.871 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=7;CIGAR=1X;DP=7;DPB=7;DPRA=0;EPP=18.2106;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=227;QR=0;RO=0;RPL=7;RPP=18.2106;RPPR=0;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1:0,1:0:0:1:34:-3.39891,-0.30103,0 ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:65:-6.17329,-0.60206,0 1/1:4:0,4:0:0:4:128:-11.8366,-1.20412,0 dDocent_Contig_7644 33 . C T 175.827 . AB=0.291667;ABP=12.0581;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=50;DPB=50;DPRA=2.76923;EPP=18.2106;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=287;QR=1726;RO=43;RPL=0;RPP=18.2106;RPPR=96.3836;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:17,7:17:688:7:287:-18.9805,0,-55.0243 0/0:16:16,0:16:634:0:0:0,-4.81648,-57.391 0/0:7:7,0:7:282:0:0:0,-2.10721,-25.7526 0/0:3:3,0:3:122:0:0:0,-0.90309,-11.3725 dDocent_Contig_7645 114 . T C 538.1 . AB=0.594595;ABP=5.88603;AC=2;AF=0.25;AN=8;AO=22;CIGAR=1X2M1X;DP=50;DPB=50;DPRA=2.84615;EPP=50.7827;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=752;QR=968;RO=28;RPL=0;RPP=50.7827;RPPR=63.8115;RPR=22;RUN=1;SAF=0;SAP=50.7827;SAR=22;SRF=0;SRP=63.8115;SRR=28;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:7:7,0:7:245:0:0:0,-2.10721,-22.3912 0|1:29:10,19:10:345:19:647:-49.82,0,-22.6537 0|0:6:6,0:6:208:0:0:0,-1.80618,-19.0596 0|1:8:5,3:5:170:3:105:-7.38792,0,-13.2266 dDocent_Contig_7646 9 . G T 373.888 . AB=0.158416;ABP=207.731;AC=3;AF=0.375;AN=8;AO=36;CIGAR=1X;DP=247;DPB=247;DPRA=0;EPP=81.1833;EPPR=461.191;GTI=0;LEN=1;MEANALT=1;MQM=40;MQMR=38.1801;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1369;QR=8057;RO=211;RPL=0;RPP=81.1833;RPPR=461.191;RPR=36;RUN=1;SAF=36;SAP=81.1833;SAR=0;SRF=211;SRP=461.191;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:90:71,19:71:2703:19:737:-35.4037,0,-191.487 0/1:33:29,4:29:1129:4:150:-3.19781,0,-85.4886 0/1:79:70,9:70:2663:9:326:-4.17679,0,-181.794 0/0:45:41,4:41:1562:4:156:0,-0.0556967,-119.229 dDocent_Contig_7647 24 . C T 43.7123 . AB=0.166667;ABP=20.3821;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=64;DPB=64;DPRA=1.17391;EPP=9.52472;EPPR=135.47;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=120;QR=2395;RO=61;RPL=0;RPP=9.52472;RPPR=135.47;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=61;SRP=135.47;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:15,3:15:557:3:120:-5.76915,0,-45.0376 0/0:20:20,0:20:790:0:0:0,-6.0206,-71.42 0/0:15:15,0:15:603:0:0:0,-4.51545,-54.6086 0/0:11:11,0:11:445:0:0:0,-3.31133,-40.4061 dDocent_Contig_7649 127 . A G 698.393 . AB=0.7;ABP=16.9077;AC=1;AF=0.125;AN=8;AO=28;CIGAR=1X;DP=129;DPB=129;DPRA=1.34831;EPP=63.8115;EPPR=222.329;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=58.5149;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.920792;PAO=0;PQA=0;PQR=0;PRO=0;QA=922;QR=3529;RO=101;RPL=0;RPP=63.8115;RPPR=222.329;RPR=28;RUN=1;SAF=0;SAP=63.8115;SAR=28;SRF=0;SRP=222.329;SRR=101;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:40:12,28:12:425:28:922:-71.2373,0,-26.5464 0/0:51:51,0:51:1787:0:0:0,-15.3525,-161.115 0/0:27:27,0:27:934:0:0:0,-8.12781,-77.6869 0/0:11:11,0:11:383:0:0:0,-3.31133,-34.805 dDocent_Contig_7650 31 . A G 1260.87 . AB=0.09375;ABP=48.8827;AC=0;AF=0;AN=8;AO=3;CIGAR=1M2D1X4M;DP=132;DPB=118.75;DPRA=0;EPP=9.52472;EPPR=174.557;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.949367;PAO=0;PQA=0;PQR=0;PRO=0;QA=119;QR=3111;RO=79;RPL=0;RPP=9.52472;RPPR=174.557;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=79;SRP=174.557;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:38:22,0,16:22:868:0,16:0,606:-43.4193,-50.0419,-121.467,0,-71.81,-66.9935 0|0:32:25,3,4:25:984:3,4:119,159:-5.56527,-3.2957,-83.3308,0,-71.1428,-79.7347 0|0:20:5,0,15:5:200:0,15:0,591:-47.5078,-49.0129,-65.4892,0,-16.8744,-12.3589 0|0:42:27,0,15:27:1059:0,15:0,548:-36.9927,-45.1205,-132.225,0,-87.4793,-82.9638 dDocent_Contig_7652 8 . C T 149.443 . AB=0.210526;ABP=30.668;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=118;DPB=118;DPRA=1.425;EPP=20.3821;EPPR=241.872;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.990909;PAO=0;PQA=0;PQR=0;PRO=0;QA=308;QR=4221;RO=110;RPL=0;RPP=20.3821;RPPR=241.872;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=110;SRP=241.872;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:44:44,0:44:1688:0:0:0,-13.2453,-152.179 0/0:22:22,0:22:845:0:0:0,-6.62266,-76.3724 0/1:38:30,8:30:1148:8:308:-16.6432,0,-92.1817 0/0:14:14,0:14:540:0:0:0,-4.21442,-48.9457 dDocent_Contig_7653 36 . C T 1213.87 . AB=0.5;ABP=3.0103;AC=4;AF=0.5;AN=8;AO=42;CIGAR=1X;DP=84;DPB=84;DPRA=0;EPP=94.2121;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.547619;PAIREDR=0.857143;PAO=0;PQA=0;PQR=0;PRO=0;QA=1696;QR=1684;RO=42;RPL=0;RPP=94.2121;RPPR=94.2121;RPR=42;RUN=1;SAF=42;SAP=94.2121;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:12,11:12:477:11:439:-32.9403,0,-36.3503 0/1:21:10,11:10:402:11:448:-34.3543,0,-30.2151 0/1:30:16,14:16:643:14:565:-42.162,0,-49.1703 0/1:10:4,6:4:162:6:244:-19.3285,0,-11.9567 dDocent_Contig_7655 13 . T C 192.206 . AB=0.32;ABP=10.0459;AC=2;AF=0.25;AN=8;AO=10;CIGAR=1X;DP=88;DPB=88;DPRA=0;EPP=24.725;EPPR=172.385;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=408;QR=3043;RO=78;RPL=0;RPP=24.725;RPPR=172.385;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=78;SRP=172.385;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:41:40,1:40:1572:1:41:0,-8.24766,-137.63 0/1:20:13,7:13:510:7:286:-20.0942,0,-40.2254 0/0:22:21,1:21:806:1:41:0,-2.52809,-68.7611 0/1:5:4,1:4:155:1:40:-2.49053,0,-12.8198 dDocent_Contig_7656 12 . A G 3984.99 . AB=0.0444162;ABP=1423.63;AC=0;AF=0;AN=8;AO=35;CIGAR=1X3M1X;DP=788;DPB=788;DPRA=0;EPP=79.0118;EPPR=1184.29;GTI=0;LEN=1;MEANALT=4.75;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=0.685714;PAIREDR=0.711397;PAO=0;PQA=0;PQR=0;PRO=0;QA=1328;QR=20987;RO=544;RPL=0;RPP=79.0118;RPPR=1184.29;RPR=35;RUN=1;SAF=35;SAP=79.0118;SAR=0;SRF=544;SRP=1184.29;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:229:154,4,14,48:154:5983:4,14,48:149,540,1914:-111.281,-145.447,-635.858,-113.297,-592.718,-600.698,0,-479.434,-447.284,-477.179 0|0:196:151,4,3,38:151:5816:4,3,38:155,115,1514:-79.2262,-111.95,-588.258,-115.244,-580.024,-591.853,0,-464.789,-468.083,-466.082 0|0:229:153,3,13,56:153:5908:3,13,56:121,488,2147:-130.127,-166.209,-650.499,-136.214,-611.431,-617.492,0,-475.219,-445.222,-468.336 0|0:134:86,7,5,34:86:3280:7,5,34:283,185,1350:-85.2629,-87.8166,-354.762,-96.0216,-341.737,-363.566,0,-245.731,-253.933,-258.83 dDocent_Contig_7657 8 . C T 304.906 . AB=0.244898;ABP=30.7077;AC=2;AF=0.25;AN=8;AO=12;CIGAR=3X;DP=88;DPB=88;DPRA=1.36111;EPP=29.068;EPPR=150.67;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0.941176;PAO=0;PQA=0;PQR=0;PRO=0;QA=468;QR=2594;RO=68;RPL=0;RPP=29.068;RPPR=150.67;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=68;SRP=150.67;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:24:15,6,3:15:558:6,3:234,117:-14.7224,0,-43.8489,-9.72579,-36.1394,-54.4767 0|0:21:17,0,4:17:645:0,4:0,147:-7.26078,-12.3783,-65.2762,0,-53.2673,-52.0632 0|1:25:19,6,0:19:738:6,0:234,0:-13.9054,0,-59.2255,-19.6249,-61.0317,-80.2673 0|0:18:17,0,1:17:653:0,1:0,40:0,-5.11751,-58.7092,-1.43978,-55.4285,-55.1275 dDocent_Contig_7658 127 . T G 214.289 . AB=0.323529;ABP=12.2071;AC=2;AF=0.25;AN=8;AO=11;CIGAR=1X;DP=48;DPB=48;DPRA=2.42857;EPP=26.8965;EPPR=34.0565;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=52.6216;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.810811;PAO=0;PQA=0;PQR=0;PRO=0;QA=382;QR=1237;RO=37;RPL=0;RPP=26.8965;RPPR=83.3548;RPR=11;RUN=1;SAF=0;SAP=26.8965;SAR=11;SRF=7;SRP=34.0565;SRR=30;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:13,4:13:447:4:139:-7.73518,0,-32.6968 0/1:17:10,7:10:345:7:243:-17.0914,0,-25.9479 0/0:12:12,0:12:382:0:0:0,-3.61236,-25.6974 0/0:2:2,0:2:63:0:0:0,-0.60206,-5.98383 dDocent_Contig_7659 59 . C T 445.116 . AB=0.212121;ABP=98.0287;AC=4;AF=0.5;AN=8;AO=28;CIGAR=1X;DP=132;DPB=132;DPRA=0;EPP=63.8115;EPPR=226.672;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=0.75;PAIREDR=0.92233;PAO=0;PQA=0;PQR=0;PRO=0;QA=983;QR=3588;RO=103;RPL=28;RPP=63.8115;RPPR=226.672;RPR=0;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=103;SRP=226.672;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:44:37,7:37:1256:7:244:-9.05446,0,-100.088 0/1:29:26,3:26:942:3:111:-1.62405,0,-76.3681 0/1:39:23,16:23:800:16:558:-38.806,0,-60.5744 0/1:20:17,2:17:590:2:70:-0.757872,0,-47.6107 dDocent_Contig_7662 13 . A G 1516.52 . AB=0.345238;ABP=37.9607;AC=4;AF=0.5;AN=8;AO=58;CIGAR=1X;DP=168;DPB=168;DPRA=0;EPP=128.956;EPPR=241.872;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.87931;PAIREDR=0.872727;PAO=0;PQA=0;PQR=0;PRO=0;QA=2314;QR=4326;RO=110;RPL=0;RPP=128.956;RPPR=241.872;RPR=58;RUN=1;SAF=58;SAP=128.956;SAR=0;SRF=110;SRP=241.872;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:56:40,16:40:1547:16:635:-40.6273,0,-122.605 0/1:41:26,15:26:1043:15:594:-41.4569,0,-81.8193 0/1:34:18,16:18:713:16:641:-47.7886,0,-54.2567 0/1:37:26,11:26:1023:11:444:-29.1771,0,-81.226 dDocent_Contig_7663 132 . T A 238.34 . AB=0.214286;ABP=52.644;AC=3;AF=0.375;AN=8;AO=15;CIGAR=1X;DP=74;DPB=74;DPRA=5.83333;EPP=35.5824;EPPR=131.127;GTI=0;LEN=1;MEANALT=1;MQM=43.2;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=548;QR=2072;RO=59;RPL=0;RPP=35.5824;RPPR=131.127;RPR=15;RUN=1;SAF=0;SAP=35.5824;SAR=15;SRF=0;SRP=131.127;SRR=59;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:32:22,10:22:767:10:371:-23.1658,0,-59.7155 0/1:29:26,3:26:917:3:104:-0.809536,0,-74.1162 0/1:9:7,2:7:241:2:73:-4.05825,0,-19.3157 0/0:4:4,0:4:147:0:0:0,-1.20412,-13.5895 dDocent_Contig_7664 1 . N G 113.73 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:122:-11.3725,-0.90309,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_7665 13 . C T 925.064 . AB=0.0625;ABP=242.415;AC=1;AF=0.125;AN=8;AO=9;CIGAR=4M1X;DP=155;DPB=155;DPRA=0;EPP=22.5536;EPPR=222.329;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=4;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=367;QR=3958;RO=101;RPL=0;RPP=22.5536;RPPR=222.329;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=101;SRP=222.329;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:50:29,0,0,18,2:29:1132:0,0,18,2:0,0,678,82:-46.7992,-55.529,-148.587,-55.529,-148.587,-148.587,0,-93.0377,-93.0377,-87.6192,-48.7578,-141.818,-141.818,-86.2684,-141.216 0|0:65:43,5,0,15,1:43:1686:5,0,15,1:189,0,567,41:-33.5274,-30.9824,-168.135,-46.4717,-169.64,-185.129,0,-123.169,-138.657,-134.142,-43.0862,-166.256,-181.745,-135.273,-181.444 0|1:29:22,0,0,1,6:22:861:0,0,1,6:0,0,37,244:-13.535,-20.1577,-90.9437,-20.1577,-90.9437,-90.9437,-17.1358,-87.9175,-87.9175,-87.6165,0,-70.8139,-70.8139,-67.7878,-69.0077 0|0:11:7,0,3,1,0:7:279:0,3,1,0:0,101,38,0:-6.04276,-8.14997,-31.1587,0,-22.9925,-22.0894,-5.02265,-28.0422,-19.8783,-27.7411,-8.14997,-31.1587,-22.9925,-28.0422,-31.1587 dDocent_Contig_7666 14 . G A 157.255 . AB=0.228571;ABP=25.4075;AC=2;AF=0.25;AN=8;AO=8;CIGAR=1X;DP=56;DPB=56;DPRA=1.66667;EPP=20.3821;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=312;QR=1911;RO=48;RPL=0;RPP=20.3821;RPPR=107.241;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:19,7:19:758:7:273:-17.107,0,-60.7127 0/0:14:14,0:14:562:0:0:0,-4.21442,-50.9206 0/1:9:8,1:8:315:1:39:-1.18729,0,-26.0039 0/0:7:7,0:7:276:0:0:0,-2.10721,-25.2062 dDocent_Contig_7667 8 . C G 84.6176 . AB=0.333333;ABP=5.9056;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=43;DPB=43;DPRA=1.16129;EPP=11.6962;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=149;QR=1474;RO=39;RPL=0;RPP=11.6962;RPPR=87.6977;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:10:10,0:10:385:0:0:0,-3.0103,-35.0063 0/1:12:8,4:8:304:4:149:-10.1605,0,-24.1057 0/0:19:19,0:19:707:0:0:0,-5.71957,-63.9498 0/0:2:2,0:2:78:0:0:0,-0.60206,-7.40347 dDocent_Contig_7668 57 . C A 4011.3 . AB=0.550201;ABP=8.46078;AC=4;AF=0.5;AN=8;AO=137;CIGAR=1X;DP=249;DPB=249;DPRA=0;EPP=300.502;EPPR=246.215;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=0.946429;PAO=0;PQA=0;PQR=0;PRO=0;QA=5356;QR=4412;RO=112;RPL=137;RPP=300.502;RPPR=246.215;RPR=0;RUN=1;SAF=137;SAP=300.502;SAR=0;SRF=112;SRP=246.215;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:89:14,75:14:525:75:2946:-238.459,0,-20.7887 0/1:69:30,39:30:1181:39:1530:-117.173,0,-85.8004 0/1:71:50,21:50:1988:21:799:-50.8478,0,-157.746 0/1:20:18,2:18:718:2:81:-1.66513,0,-58.9234 dDocent_Contig_7669 8 . C T 41.525 . AB=0.176471;ABP=18.4661;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=93;DPB=93;DPRA=0.897959;EPP=11.6962;EPPR=196.271;GTI=0;LEN=1;MEANALT=1;MQM=51;MQMR=55;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.842697;PAO=0;PQA=0;PQR=0;PRO=0;QA=150;QR=3395;RO=89;RPL=0;RPP=11.6962;RPPR=196.271;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=89;SRP=196.271;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:14,3:14:546:3:115:-5.55041,0,-44.3689 0/0:27:26,1:26:980:1:35:0,-4.63858,-82.5751 0/0:29:29,0:29:1114:0:0:0,-8.72987,-86.5516 0/0:20:20,0:20:755:0:0:0,-6.0206,-63.933 dDocent_Contig_7670 107 . N G 169.829 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=5;CIGAR=1X;DP=5;DPB=5;DPRA=0;EPP=13.8677;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=172;QR=0;RO=0;RPL=0;RPP=13.8677;RPPR=0;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:69:-6.55266,-0.60206,0 1/1:2:0,2:0:0:2:69:-6.55266,-0.60206,0 1/1:1:0,1:0:0:1:34:-3.39891,-0.30103,0 dDocent_Contig_7671 34 . A C 69.7497 . AB=0.185185;ABP=26.2531;AC=2;AF=0.25;AN=8;AO=5;CIGAR=2X1M1X1M1X;DP=71;DPB=71;DPRA=0.613636;EPP=13.8677;EPPR=144.156;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.907692;PAO=0;PQA=0;PQR=0;PRO=0;QA=197;QR=2544;RO=65;RPL=0;RPP=13.8677;RPPR=144.156;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=65;SRP=144.156;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:25:24,0:24:949:0:0:0,-7.22472,-85.3185 0|1:17:14,3:14:534:3:118:-5.88521,0,-43.2837 0|0:19:19,0:19:748:0:0:0,-5.71957,-67.6443 0|1:10:8,2:8:313:2:79:-4.48733,0,-25.5238 dDocent_Contig_7672 10 . A G 55.7486 . AB=0.139535;ABP=51.5402;AC=2;AF=0.25;AN=8;AO=8;CIGAR=1X;DP=119;DPB=119;DPRA=1.1358;EPP=20.3821;EPPR=244.044;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.5225;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=0.963964;PAO=0;PQA=0;PQR=0;PRO=0;QA=309;QR=4390;RO=111;RPL=0;RPP=20.3821;RPPR=244.044;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=111;SRP=244.044;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:34:29,5:29:1136:5:187:-6.9523,0,-92.2863 0/0:27:27,0:27:1061:0:0:0,-8.12781,-95.7765 0/0:49:47,2:47:1879:2:82:0,-6.97079,-161.059 0/1:9:8,1:8:314:1:40:-1.28641,0,-25.9115 dDocent_Contig_7673 98 . N T 346.396 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=11;CIGAR=6X;DP=11;DPB=11;DPRA=0;EPP=26.8965;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=374;QR=0;RO=0;RPL=11;RPP=26.8965;RPPR=0;RPR=0;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:10:0,10:0:0:10:339:-30.8388,-3.0103,0 .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. 1|1:1:0,1:0:0:1:35:-3.49863,-0.30103,0 dDocent_Contig_7674 16 . G A 2290.59 . AB=0.030837;ABP=437.008;AC=0;AF=0;AN=8;AO=7;CIGAR=1X3M1X;DP=239;DPB=239;DPRA=0;EPP=18.2106;EPPR=317.874;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.285714;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=269;QR=5610;RO=145;RPL=0;RPP=18.2106;RPPR=317.874;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=145;SRP=317.874;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:93:50,4,38:50:1938:4,38:148,1518:-110.019,-112.97,-270.975,0,-147.145,-147.808 0|0:103:73,1,29:73:2823:1,29:41,1131:-70.9583,-89.5488,-321.115,0,-228.462,-223.117 0|0:31:20,2,9:20:770:2,9:80,353:-23.0024,-22.4315,-85.0448,0,-56.6153,-60.4975 0|0:12:2,0,10:2:79:0,10:0,397:-32.4759,-33.078,-39.5786,0,-6.89557,-3.88527 dDocent_Contig_7675 9 . G A 333.259 . AB=0.262295;ABP=32.9481;AC=2;AF=0.25;AN=8;AO=16;CIGAR=1X;DP=129;DPB=129;DPRA=0.897059;EPP=37.7539;EPPR=248.387;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=602;QR=4299;RO=113;RPL=0;RPP=37.7539;RPPR=248.387;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=113;SRP=248.387;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:41:41,0:41:1564:0:0:0,-12.3422,-141.032 0/0:27:27,0:27:1029:0:0:0,-8.12781,-92.9165 0/1:55:40,15:40:1524:15:569:-34.9923,0,-120.87 0/1:6:5,1:5:182:1:33:-1.49295,0,-14.9261 dDocent_Contig_7676 15 . C T 775.991 . AB=0.205128;ABP=150.281;AC=4;AF=0.5;AN=8;AO=40;CIGAR=1X;DP=195;DPB=195;DPRA=0;EPP=89.8692;EPPR=339.589;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.525;PAIREDR=0.774194;PAO=0;PQA=0;PQR=0;PRO=0;QA=1581;QR=6265;RO=155;RPL=0;RPP=89.8692;RPPR=339.589;RPR=40;RUN=1;SAF=40;SAP=89.8692;SAR=0;SRF=155;SRP=339.589;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:33:27,6:27:1093:6:240:-12.0411,0,-88.7205 0/1:31:21,10:21:851:10:400:-27.0248,0,-67.5696 0/1:37:32,5:32:1297:5:188:-6.13879,0,-105.849 0/1:94:75,19:75:3024:19:753:-39.7923,0,-243.936 dDocent_Contig_7677 7 . T C 6234.58 . AB=0.257534;ABP=562.161;AC=4;AF=0.5;AN=8;AO=282;CIGAR=1X;DP=1095;DPB=1095;DPRA=0;EPP=615.366;EPPR=1764.07;GTI=0;LEN=1;MEANALT=1.25;MQM=55.5496;MQMR=59.3613;NS=4;NUMALT=1;ODDS=0;PAIRED=0.585106;PAIREDR=0.94328;PAO=0;PQA=0;PQR=0;PRO=0;QA=10755;QR=30965;RO=811;RPL=0;RPP=615.366;RPPR=1764.07;RPR=282;RUN=1;SAF=282;SAP=615.366;SAR=0;SRF=811;SRP=1764.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:332:241,89:241:9165:89:3390:-200.109,0,-720.283 0/1:302:230,72:230:8743:72:2758:-156.264,0,-692.623 0/1:331:243,88:243:9337:88:3333:-199.083,0,-739.996 0/1:130:97,33:97:3720:33:1274:-75.3998,0,-295.458 dDocent_Contig_7678 12 . T G 205.082 . AB=0.168831;ABP=76.3609;AC=4;AF=0.5;AN=8;AO=13;CIGAR=1X;DP=77;DPB=77;DPRA=0;EPP=31.2394;EPPR=141.985;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.923077;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=532;QR=2549;RO=64;RPL=0;RPP=31.2394;RPPR=141.985;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=64;SRP=141.985;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:24,3:24:946:3:123:-3.33698,0,-77.3012 0/1:31:23,8:23:917:8:327:-20.4682,0,-73.5022 0/1:12:11,1:11:446:1:41:-0.482207,0,-36.8832 0/1:7:6,1:6:240:1:41:-1.98736,0,-19.8673 dDocent_Contig_7679 12 . C T 1144.84 . AB=0.296774;ABP=58.614;AC=4;AF=0.5;AN=8;AO=46;CIGAR=1X;DP=155;DPB=155;DPRA=0;EPP=102.898;EPPR=239.701;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.782609;PAIREDR=0.954128;PAO=0;PQA=0;PQR=0;PRO=0;QA=1857;QR=4396;RO=109;RPL=0;RPP=102.898;RPPR=239.701;RPR=46;RUN=1;SAF=46;SAP=102.898;SAR=0;SRF=109;SRP=239.701;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:42:24,18:24:974:18:730:-53.3806,0,-75.3143 0/1:47:35,12:35:1412:12:478:-29.2213,0,-113.181 0/1:41:34,7:34:1378:7:283:-13.5008,0,-111.931 0/1:25:16,9:16:632:9:366:-25.7794,0,-49.6883 dDocent_Contig_7680 136 . C A 163.665 . AB=0.368421;ABP=5.8675;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=67;DPB=67;DPRA=1.1875;EPP=18.2106;EPPR=133.299;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=257;QR=2128;RO=60;RPL=0;RPP=18.2106;RPPR=133.299;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=133.299;SRR=60;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:12,7:12:439:7:257:-17.7644,0,-34.1344 0/0:30:30,0:30:1056:0:0:0,-9.0309,-95.348 0/0:14:14,0:14:493:0:0:0,-4.21442,-44.7008 0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9437 dDocent_Contig_7682 44 . C T 337.722 . AB=0.238806;ABP=42.7126;AC=3;AF=0.5;AN=6;AO=16;CIGAR=1X;DP=67;DPB=67;DPRA=0;EPP=37.7539;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=648;QR=2027;RO=51;RPL=0;RPP=37.7539;RPPR=113.755;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:17,9:17:669:9:366:-25.4784,0,-52.7148 0/1:31:26,5:26:1034:5:200:-9.0471,0,-84.0228 0/1:10:8,2:8:324:2:82:-4.76938,0,-26.5191 ./.:.:.:.:.:.:.:. dDocent_Contig_7683 14 . A G 57.9596 . AB=0.116883;ABP=101.178;AC=1;AF=0.125;AN=8;AO=16;CIGAR=2X;DP=348;DPB=348;DPRA=1.98667;EPP=37.7539;EPPR=723.939;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.3072;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=0.990964;PAO=0;PQA=0;PQR=0;PRO=0;QA=604;QR=12886;RO=332;RPL=0;RPP=37.7539;RPPR=723.939;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=332;SRP=723.939;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:112:107,5:107:4153:5:197:0,-15.6105,-355.216 0|0:109:107,2:107:4143:2:70:0,-26.1678,-366.136 0|1:77:68,9:68:2656:9:337:-7.49493,0,-215.805 0|0:50:50,0:50:1934:0:0:0,-15.0515,-174.207 dDocent_Contig_7684 12 . C T 5800.36 . AB=0.09375;ABP=94.755;AC=0;AF=0;AN=8;AO=6;CIGAR=1X3M1X;DP=258;DPB=258;DPRA=0;EPP=16.0391;EPPR=146.327;GTI=0;LEN=1;MEANALT=3;MQM=55.1667;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=229;QR=2619;RO=66;RPL=0;RPP=16.0391;RPPR=146.327;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=66;SRP=146.327;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:75:25,0,50:25:982:0,50:0,2005:-158.062,-165.588,-246.351,0,-81.1585,-66.107 0|0:76:13,0,62:13:517:0,62:0,2468:-198.186,-202.1,-244.666,0,-42.5731,-23.9092 0|0:64:16,6,41:16:646:6,41:229,1651:-131.271,-117.347,-168.796,0,-34.531,-40.9264 0|0:43:12,0,31:12:474:0,31:0,1251:-99.9139,-103.526,-142.524,0,-39.3945,-30.0626 dDocent_Contig_7685 8 . C A 4475.91 . AB=0.295455;ABP=98.9499;AC=3;AF=0.375;AN=8;AO=78;CIGAR=1X1M2X;DP=264;DPB=264;DPRA=0;EPP=172.385;EPPR=135.47;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3038;QR=2393;RO=61;RPL=0;RPP=172.385;RPPR=135.47;RPR=78;RUN=1;SAF=78;SAP=172.385;SAR=0;SRF=61;SRP=135.47;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:94:29,23,42:29:1127:23,42:892,1632:-125.37,-60.8135,-146.493,0,-19.3172,-79.9607 1|0:85:19,21,45:19:752:21,45:818,1751:-143.509,-81.9955,-137.568,-5.33429,0,-53.683 1|0:49:12,17,20:12:474:17,20:665,781:-76.2592,-25.1937,-59.0835,-15.6682,0,-48.6547 1|0:36:1,17,18:1:40:17,18:663,716:-109.851,-55.6572,-53.8349,-51.1931,0,-49.0702 dDocent_Contig_7689 11 . C A 261.845 . AB=0.261905;ABP=23.691;AC=1;AF=0.125;AN=8;AO=11;CIGAR=1X;DP=140;DPB=140;DPRA=1.28571;EPP=26.8965;EPPR=283.13;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=0.0909091;PAIREDR=0.829457;PAO=0;PQA=0;PQR=0;PRO=0;QA=443;QR=5194;RO=129;RPL=0;RPP=26.8965;RPPR=283.13;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=129;SRP=283.13;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:42:31,11:31:1250:11:443:-27.5824,0,-100.123 0/0:30:30,0:30:1217:0:0:0,-9.0309,-109.795 0/0:54:54,0:54:2156:0:0:0,-16.2556,-194.217 0/0:14:14,0:14:571:0:0:0,-4.21442,-51.7319 dDocent_Contig_7690 53 . T A 1137.14 . AB=0.191489;ABP=119.577;AC=2;AF=0.25;AN=8;AO=29;CIGAR=5M1X;DP=171;DPB=142.333;DPRA=0;EPP=65.983;EPPR=217.986;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.965517;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1144;QR=3873;RO=99;RPL=29;RPP=65.983;RPPR=217.986;RPR=0;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=99;SRP=217.986;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:73:33,29,11:33:1290:29,11:1075,424:-77.9938,0,-97.3233,-53.1133,-71.2441,-155.862 0|1:45:22,11,12:22:867:11,12:413,481:-33.0193,-5.8228,-73.8362,0,-37.5163,-67.729 0|0:30:26,2,2:26:1003:2,2:71,76:0,-2.05403,-83.8146,-1.58256,-78.1853,-83.3662 0|1:23:18,1,4:18:713:1,4:32,163:-8.09843,-10.956,-69.3299,0,-56.1816,-57.5518 dDocent_Contig_7691 13 . A G 1042.58 . AB=0.122807;ABP=73.4498;AC=0;AF=0;AN=8;AO=8;CIGAR=1X1M1X10M;DP=206;DPB=208.846;DPRA=0;EPP=20.3821;EPPR=209.3;GTI=0;LEN=1;MEANALT=7.5;MQM=60;MQMR=60;NS=4;NUMALT=7;ODDS=0;PAIRED=0;PAIREDR=0.789474;PAO=0;PQA=0;PQR=0;PRO=0;QA=302;QR=3721;RO=95;RPL=0;RPP=20.3821;RPPR=209.3;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=95;SRP=209.3;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:75:58,5,1,2,0,1,5,1:58:2262:5,1,2,0,1,5,1:178,39,81,0,41,204,11:0,-4.23358,-188.66,-14.2521,-186.959,-199.894,-10.7748,-183.485,-193.516,-196.12,-17.4597,-190.165,-200.195,-196.722,-203.401,-14.0727,-186.781,-196.811,-193.337,-200.017,-199.716,-0.609123,-173.332,-183.362,-179.888,-186.568,-183.184,-185.063,-16.7865,-189.48,-199.51,-196.036,-202.716,-199.332,-185.883,-202.415 0|0:57:19,19,0,5,0,5,3,2:19:760:19,0,5,0,5,3,2:684,0,193,0,197,123,74:-44.9428,0,-56.8896,-50.6623,-62.6092,-113.281,-34.8089,-46.7611,-97.43,-95.9249,-50.6623,-62.6092,-113.281,-97.43,-113.281,-34.4512,-46.4033,-97.0727,-81.2216,-97.0727,-95.5675,-40.506,-52.4558,-103.127,-87.2755,-103.127,-86.9182,-102.224,-44.6096,-56.5584,-107.229,-91.3779,-107.229,-91.0205,-97.0745,-106.627 0|0:57:10,5,7,4,10,0,18,0:10:392:5,7,4,10,0,18,0:169,263,157,399,0,723,0:-57.2005,-47.6275,-78.3578,-38.6678,-58.3211,-68.7974,-47.2977,-66.9506,-57.9918,-78.3307,-27.3479,-47.0025,-38.0427,-46.6727,-56.5756,-60.2108,-79.8629,-70.9046,-79.5348,-59.5859,-92.4476,-0.625791,-20.284,-11.3222,-19.9522,0,-32.8662,-27.4477,-60.2108,-79.8629,-70.9046,-79.5348,-59.5859,-92.4476,-32.8662,-92.4476 0|0:17:8,2,0,0,3,0,2,2:8:307:2,0,0,3,0,2,2:72,0,0,120,0,77,79:-7.48696,-4.57323,-29.1607,-9.8952,-29.7627,-35.092,-9.8952,-29.7627,-35.092,-35.092,0,-19.8747,-25.2029,-25.2029,-24.2998,-9.8952,-29.7627,-35.092,-35.092,-25.2029,-35.092,-3.57228,-23.4418,-28.7701,-28.7701,-18.8802,-28.7701,-28.168,-3.39034,-23.2612,-28.5897,-28.5897,-18.6995,-28.5897,-22.2674,-27.9876 dDocent_Contig_7692 21 . C G 456.509 . AB=0.382979;ABP=8.60069;AC=3;AF=0.375;AN=8;AO=19;CIGAR=1X;DP=61;DPB=61;DPRA=0;EPP=44.2683;EPPR=85.7331;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59;NS=4;NUMALT=1;ODDS=0;PAIRED=0.894737;PAIREDR=0.904762;PAO=0;PQA=0;PQR=0;PRO=0;QA=752;QR=1662;RO=42;RPL=0;RPP=44.2683;RPPR=94.2121;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=41;SRP=85.7331;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:7,8:7:281:8:317:-24.3808,0,-19.4062 0/1:12:7,5:7:283:5:204:-15.1317,0,-22.231 0/1:20:15,5:15:591:5:191:-11.5357,0,-47.5049 0/0:14:13,1:13:507:1:40:0,-0.218741,-41.9789 dDocent_Contig_7693 153 . G T 957.282 . AB=0.3;ABP=48.1769;AC=3;AF=0.375;AN=8;AO=42;CIGAR=1X;DP=170;DPB=170;DPRA=0;EPP=94.2121;EPPR=280.959;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1670;QR=5115;RO=128;RPL=0;RPP=94.2121;RPPR=280.959;RPR=42;RUN=1;SAF=0;SAP=94.2121;SAR=42;SRF=0;SRP=280.959;SRR=128;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:54:36,18:36:1445:18:718:-48.6905,0,-114.038 0/1:35:23,12:23:928:12:469:-32.0153,0,-73.2864 0/1:41:32,9:32:1276:9:360:-20.42,0,-102.762 0/0:40:37,3:37:1466:3:123:0,-0.576411,-120.723 dDocent_Contig_7695 9 . C T 621.453 . AB=0.19337;ABP=150.826;AC=4;AF=0.5;AN=8;AO=35;CIGAR=1X;DP=181;DPB=181;DPRA=0;EPP=79.0118;EPPR=320.045;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.945205;PAO=0;PQA=0;PQR=0;PRO=0;QA=1362;QR=5630;RO=146;RPL=0;RPP=79.0118;RPPR=320.045;RPR=35;RUN=1;SAF=35;SAP=79.0118;SAR=0;SRF=146;SRP=320.045;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:45:40,5:40:1527:5:195:-4.37785,0,-124.153 0/1:55:45,10:45:1738:10:387:-18.6309,0,-140.118 0/1:37:27,10:27:1043:10:390:-24.3206,0,-83.0394 0/1:44:34,10:34:1322:10:390:-22.2134,0,-106.02 dDocent_Contig_7696 9 . C G 95.003 . AB=0.189189;ABP=34.0565;AC=2;AF=0.25;AN=8;AO=7;CIGAR=1X;DP=78;DPB=78;DPRA=0.902439;EPP=18.2106;EPPR=157.185;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=259;QR=2718;RO=71;RPL=0;RPP=18.2106;RPPR=157.185;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=71;SRP=157.185;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:33:33,0:33:1277:0:0:0,-9.93399,-115.22 0/1:14:11,3:11:408:3:117:-6.69596,0,-32.8488 0/0:8:8,0:8:310:0:0:0,-2.40824,-28.2636 0/1:23:19,4:19:723:4:142:-6.20227,0,-58.4735 dDocent_Contig_7697 64 . C T 227.443 . AB=0.428571;ABP=4.25114;AC=1;AF=0.125;AN=8;AO=12;CIGAR=1X;DP=94;DPB=94;DPRA=1.27273;EPP=29.068;EPPR=181.071;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=362;QR=2831;RO=82;RPL=12;RPP=29.068;RPPR=181.071;RPR=0;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=82;SRP=181.071;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:32:32,0:32:1118:0:0:0,-9.63296,-100.929 0/0:30:30,0:30:1038:0:0:0,-9.0309,-93.7305 0/0:4:4,0:4:134:0:0:0,-1.20412,-12.3912 0/1:28:16,12:16:541:12:362:-24.4432,0,-40.5815 dDocent_Contig_7698 110 . G A 208.234 . AB=0.226415;ABP=37.4671;AC=2;AF=0.25;AN=8;AO=16;CIGAR=1X4M1X;DP=103;DPB=103;DPRA=11.1111;EPP=37.7539;EPPR=155.013;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=1.38778e-17;PAIRED=0.5;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=529;QR=2252;RO=70;RPL=0;RPP=37.7539;RPPR=155.013;RPR=16;RUN=1;SAF=0;SAP=37.7539;SAR=16;SRF=0;SRP=155.013;SRR=70;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:47:40,3,4,0:40:1288:3,4,0:92,130,0:0,-4.67443,-107.614,-1.53824,-98.0241,-104.194,-12.0412,-108.517,-105.398,-115.891 0|1:33:14,7,8,3:14:425:7,8,3:218,271,105:-17.7757,-4.48458,-36.3956,0,-16.5166,-31.6204,-13.4406,-29.9545,-25.4788,-46.5611 0|1:20:13,0,4,2:13:439:0,4,2:0,128,67:-6.44521,-10.3586,-45.9763,0,-35.6633,-34.4592,-4.91271,-40.5484,-30.2349,-39.9464 0|0:3:3,0,0,0:3:100:0,0,0:0,0,0:0,-0.90309,-9.3306,-0.90309,-9.3306,-9.3306,-0.90309,-9.3306,-9.3306,-9.3306 dDocent_Contig_7699 22 . G A 131.481 . AB=0.225806;ABP=23.254;AC=2;AF=0.25;AN=8;AO=10;CIGAR=1X;DP=85;DPB=85;DPRA=2.5;EPP=24.725;EPPR=165.871;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.986667;PAO=0;PQA=0;PQR=0;PRO=0;QA=399;QR=2929;RO=75;RPL=0;RPP=24.725;RPPR=165.871;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=75;SRP=165.871;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:44:41,3:41:1613:3:120:0,-2.05801,-134.218 0/1:22:18,4:18:701:4:161:-8.25261,0,-56.7905 0/1:9:6,3:6:243:3:118:-8.29345,0,-19.5387 0/0:10:10,0:10:372:0:0:0,-3.0103,-33.8133 dDocent_Contig_7700 23 . T A 1987.31 . AB=0.496552;ABP=3.02528;AC=4;AF=0.5;AN=8;AO=72;CIGAR=1X;DP=145;DPB=145;DPRA=0;EPP=159.356;EPPR=157.185;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2759;QR=2593;RO=71;RPL=0;RPP=159.356;RPPR=157.185;RPR=72;RUN=1;SAF=72;SAP=159.356;SAR=0;SRF=71;SRP=157.185;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:59:26,32:26:928:32:1241:-94.3981,0,-66.2594 0/1:46:18,28:18:671:28:1066:-82.3793,0,-46.8747 0/1:22:18,4:18:690:4:161:-8.25261,0,-55.8107 0/1:18:9,8:9:304:8:291:-21.0995,0,-22.2499 dDocent_Contig_7701 41 . A C 284.691 . AB=0.245283;ABP=32.8783;AC=2;AF=0.25;AN=8;AO=13;CIGAR=1X;DP=86;DPB=86;DPRA=1.60606;EPP=31.2394;EPPR=161.528;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.972603;PAO=0;PQA=0;PQR=0;PRO=0;QA=523;QR=2917;RO=73;RPL=0;RPP=31.2394;RPPR=161.528;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=73;SRP=161.528;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:29:29,0:29:1171:0:0:0,-8.72987,-105.667 0/1:40:30,10:30:1197:10:400:-24.3155,0,-95.9666 0/1:13:10,3:10:398:3:123:-7.5514,0,-32.2654 0/0:4:4,0:4:151:0:0:0,-1.20412,-13.9531 dDocent_Contig_7703 43 . C A 1605.54 . AB=0.0632911;ABP=133.876;AC=0;AF=0;AN=8;AO=5;CIGAR=2X;DP=134;DPB=134;DPRA=0;EPP=13.8677;EPPR=155.013;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.942857;PAO=0;PQA=0;PQR=0;PRO=0;QA=202;QR=2775;RO=70;RPL=0;RPP=13.8677;RPPR=155.013;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=70;SRP=155.013;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:42:21,0,21:21:831:0,21:0,824:-61.8253,-68.1469,-136.538,0,-68.7843,-62.4627 0|0:48:18,1,28:18:725:1,28:41,1107:-85.6697,-87.7036,-147.161,0,-56.3688,-51.3245 0|0:31:20,4,7:20:781:4,7:161,276:-16.6825,-9.43134,-72.425,0,-50.92,-62.0835 0|0:13:11,0,2:11:438:0,2:0,81:-3.77234,-7.08367,-43.144,0,-36.4638,-35.8617 dDocent_Contig_7704 19 . A T 165.504 . AB=0.291667;ABP=12.0581;AC=1;AF=0.125;AN=8;AO=10;CIGAR=1X1M1I6M;DP=76;DPB=77.75;DPRA=3.75;EPP=24.725;EPPR=137.642;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=383;QR=2444;RO=62;RPL=0;RPP=24.725;RPPR=137.642;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:36:33,0,3:33:1305:0,3:0,113:0,-9.93399,-117.347,-0.298274,-108.089,-107.186 0|1:24:13,4,7:13:517:4,7:160,270:-18.2488,-8.97689,-50.3475,0,-29.3846,-40.458 0|0:6:6,0,0:6:233:0,0:0,0:0,-1.80618,-21.339,-1.80618,-21.339,-21.339 0|0:10:10,0,0:10:389:0,0:0,0:0,-3.0103,-35.3654,-3.0103,-35.3654,-35.3654 dDocent_Contig_7705 48 . T A 1140.63 . AB=0.338983;ABP=29.5832;AC=3;AF=0.375;AN=8;AO=40;CIGAR=1X2M1X;DP=118;DPB=118;DPRA=0;EPP=89.8692;EPPR=118.098;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.85;PAIREDR=0.660377;PAO=0;PQA=0;PQR=0;PRO=0;QA=1538;QR=2075;RO=53;RPL=40;RPP=89.8692;RPPR=118.098;RPR=0;RUN=1;SAF=40;SAP=89.8692;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:40:23,13,4:23:903:13,4:498,160:-33.9316,0,-70.3472,-27.6716,-61.0798,-100.74 0|1:42:18,16,8:18:711:16,8:608,326:-44.4209,0,-53.6822,-22.9357,-31.6002,-79.0426 1|0:16:4,5,7:4:154:5,7:196,283:-25.6164,-10.7072,-21.8396,-3.48089,0,-14.0151 0|0:20:8,6,6:8:307:6,6:236,241:-17.4548,-0.453652,-23.8329,0,-5.77254,-23.384 dDocent_Contig_7706 16 . C T 176.441 . AB=0.307692;ABP=11.3621;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=119;DPB=119;DPRA=0.83871;EPP=20.3821;EPPR=244.044;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.875;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=298;QR=4385;RO=111;RPL=0;RPP=20.3821;RPPR=244.044;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=111;SRP=244.044;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:43:43,0:43:1697:0:0:0,-12.9443,-152.947 0/0:46:46,0:46:1815:0:0:0,-13.8474,-163.557 0/1:26:18,8:18:712:8:298:-19.343,0,-56.58 0/0:4:4,0:4:161:0:0:0,-1.20412,-14.8749 dDocent_Contig_7707 69 . G A 135.627 . AB=0.266667;ABP=17.1973;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X;DP=127;DPB=127;DPRA=1.22807;EPP=22.5536;EPPR=259.244;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=294;QR=3876;RO=118;RPL=9;RPP=22.5536;RPPR=259.244;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=118;SRP=259.244;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:22,8:22:738:8:263:-14.9606,0,-57.7035 0/0:40:39,1:39:1257:1:31:0,-8.94175,-110.317 0/0:29:29,0:29:936:0:0:0,-8.72987,-84.5375 0/0:28:28,0:28:945:0:0:0,-8.42884,-85.3591 dDocent_Contig_7708 41 . T C 55.8514 . AB=0.166667;ABP=26.1727;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=68;DPB=68;DPRA=1.95652;EPP=13.8677;EPPR=139.813;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=198;QR=2387;RO=63;RPL=0;RPP=13.8677;RPPR=139.813;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=63;SRP=139.813;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:6:6,0:6:230:0:0:0,-1.80618,-21.0648 0/0:17:17,0:17:651:0:0:0,-5.11751,-58.9204 0/1:24:20,4:20:757:4:157:-7.28408,0,-61.2286 0/0:21:20,1:20:749:1:41:0,-2.22706,-63.6316 dDocent_Contig_7709 54 . A G 147.257 . AB=0.205128;ABP=32.4644;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=121;DPB=121;DPRA=1.42683;EPP=20.3821;EPPR=248.387;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.884956;PAO=0;PQA=0;PQR=0;PRO=0;QA=309;QR=4323;RO=113;RPL=8;RPP=20.3821;RPPR=248.387;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=113;SRP=248.387;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:30:30,0:30:1128:0:0:0,-9.0309,-101.809 0/1:39:31,8:31:1200:8:309:-16.4247,0,-96.5388 0/0:40:40,0:40:1520:0:0:0,-12.0412,-137.052 0/0:12:12,0:12:475:0:0:0,-3.61236,-43.1007 dDocent_Contig_7710 19 . G T 109.512 . AB=0.5;ABP=3.0103;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=102;DPB=102;DPRA=0.255319;EPP=11.6962;EPPR=215.815;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.989796;PAO=0;PQA=0;PQR=0;PRO=0;QA=163;QR=3903;RO=98;RPL=0;RPP=11.6962;RPPR=215.815;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=98;SRP=215.815;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:40:40,0:40:1577:0:0:0,-12.0412,-142.162 0/0:45:45,0:45:1803:0:0:0,-13.5463,-162.481 0/0:9:9,0:9:361:0:0:0,-2.70927,-32.853 0/1:8:4,4:4:162:4:163:-12.6502,0,-12.5587 dDocent_Contig_7711 50 . T C 1133.76 . AB=0.356522;ABP=23.5732;AC=5;AF=0.625;AN=8;AO=41;CIGAR=1X1M;DP=115;DPB=115;DPRA=0;EPP=92.0407;EPPR=115.927;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1627;QR=2006;RO=52;RPL=41;RPP=92.0407;RPPR=115.927;RPR=0;RUN=1;SAF=41;SAP=92.0407;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:29:21,0,3,5:21:817:0,3,5:0,113,201:-10.2585,-16.5802,-83.7161,-7.33125,-74.4593,-73.5562,0,-67.1492,-57.8924,-65.6441 1|1:38:8,9,0,21:8:319:9,0,21:350,0,838:-69.0934,-42.7454,-66.3069,-71.5017,-69.0162,-97.7731,-2.47865,0,-28.7541,-22.4325 0|1:38:18,9,0,11:18:682:9,0,11:356,0,428:-29.7468,-5.86558,-59.0526,-35.1653,-61.7619,-91.0617,0,-26.5892,-55.8916,-52.5802 0|1:10:5,0,1,4:5:188:0,1,4:0,40,160:-11.675,-13.1801,-28.5692,-9.88503,-25.2728,-24.9718,0,-15.3811,-12.0821,-14.177 dDocent_Contig_7712 8 . C G 77.0733 . AB=0.333333;ABP=4.45795;AC=1;AF=0.125;AN=8;AO=4;CIGAR=2X3M;DP=108;DPB=108;DPRA=0;EPP=11.6962;EPPR=189.757;GTI=0;LEN=1;MEANALT=2.5;MQM=53.5;MQMR=60;NS=4;NUMALT=5;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=150;QR=3373;RO=86;RPL=0;RPP=11.6962;RPPR=189.757;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=86;SRP=189.757;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:53:47,0,3,2,0,0:47:1848:0,3,2,0,0:0,118,73,0,0:0,-14.1484,-166.263,-7.83446,-159.949,-159.046,-8.41636,-160.57,-154.257,-159.968,-14.1484,-166.263,-159.949,-160.57,-166.263,-14.1484,-166.263,-159.949,-160.57,-166.263,-166.263 0|0:34:26,2,2,0,0,4:26:1015:2,2,0,0,4:80,77,0,0,146:-4.12431,-5.33962,-88.2362,-8.74586,-85.6033,-91.5922,-11.9511,-88.8383,-92.1942,-95.4299,-11.9511,-88.8383,-92.1942,-95.4299,-95.4299,0,-76.9178,-80.2754,-83.5094,-83.5094,-82.3053 0|0:15:11,0,2,0,2,0:11:431:0,2,0,2,0:0,78,0,78,0:-3.16158,-6.47291,-41.9603,-2.32386,-37.7667,-37.1646,-6.47291,-41.9603,-37.7667,-41.9603,0,-35.5463,-31.3552,-35.5463,-34.9442,-6.47291,-41.9603,-37.7667,-41.9603,-35.5463,-41.9603 0|1:6:2,0,0,2,2,0:2:79:0,0,2,2,0:0,0,77,74,0:-5.7278,-6.32986,-12.8366,-6.32986,-12.8366,-12.8366,0,-6.51339,-6.51339,-5.91133,-0.283708,-6.78963,-6.78963,-0.472197,-6.18757,-6.32986,-12.8366,-12.8366,-6.51339,-6.78963,-12.8366 dDocent_Contig_7713 9 . C A 373.701 . AB=0.156069;ABP=180.757;AC=2;AF=0.25;AN=8;AO=29;CIGAR=1X;DP=337;DPB=337;DPRA=0.943182;EPP=65.983;EPPR=671.824;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.5617;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.983766;PAO=0;PQA=0;PQR=0;PRO=0;QA=1102;QR=11815;RO=308;RPL=0;RPP=65.983;RPPR=671.824;RPR=29;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=308;SRP=671.824;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:76:74,2:74:2836:2:78:0,-15.4748,-246.757 0/0:88:88,0:88:3387:0:0:0,-26.4906,-303.087 0/1:106:90,16:90:3424:16:606:-22.9658,0,-276.387 0/1:67:56,11:56:2168:11:418:-17.8022,0,-175.172 dDocent_Contig_7714 13 . A G 810.81 . AB=0.482759;ABP=3.16006;AC=2;AF=0.25;AN=8;AO=28;CIGAR=1X;DP=97;DPB=97;DPRA=1.48718;EPP=63.8115;EPPR=152.842;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1125;QR=2732;RO=69;RPL=0;RPP=63.8115;RPPR=152.842;RPR=28;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=69;SRP=152.842;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:47:25,22:25:995:22:880:-65.3608,0,-75.6974 0/0:25:25,0:25:999:0:0:0,-7.52575,-90.2084 0/0:14:14,0:14:542:0:0:0,-4.21442,-49.1222 0/1:11:5,6:5:196:6:245:-19.1181,0,-14.7 dDocent_Contig_7716 107 . N T 186.03 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=6;CIGAR=1X;DP=6;DPB=6;DPRA=0;EPP=16.0391;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=54.1667;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=201;QR=0;RO=0;RPL=0;RPP=16.0391;RPPR=0;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1:0,1:0:0:1:31:-3.09945,-0.30103,0 1/1:4:0,4:0:0:4:136:-12.5756,-1.20412,0 ./.:.:.:.:.:.:.:. 1/1:1:0,1:0:0:1:34:-2.44866,-0.30103,0 dDocent_Contig_7717 17 . G T 113.656 . AB=0.189189;ABP=34.0565;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=80;DPB=80;DPRA=2.5814;EPP=18.2106;EPPR=161.528;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=265;QR=2899;RO=73;RPL=0;RPP=18.2106;RPPR=161.528;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=73;SRP=161.528;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:17:17,0:17:679:0:0:0,-5.11751,-61.4345 0/0:14:14,0:14:564:0:0:0,-4.21442,-51.1034 0/1:37:30,7:30:1183:7:265:-13.0646,0,-95.6097 0/0:12:12,0:12:473:0:0:0,-3.61236,-42.9142 dDocent_Contig_7719 13 . T A 42.2621 . AB=0.113208;ABP=71.8828;AC=2;AF=0.25;AN=8;AO=6;CIGAR=1X;DP=148;DPB=148;DPRA=0.557895;EPP=16.0391;EPPR=311.359;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.9014;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.992958;PAO=0;PQA=0;PQR=0;PRO=0;QA=243;QR=5622;RO=142;RPL=0;RPP=16.0391;RPPR=311.359;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=142;SRP=311.359;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:67:67,0:67:2663:0:0:0,-20.169,-239.795 0/1:42:37,5:37:1444:5:202:-5.91861,0,-117.572 0/0:28:28,0:28:1111:0:0:0,-8.42884,-100.172 0/1:11:10,1:10:404:1:41:-0.783237,0,-33.4069 dDocent_Contig_7720 78 . A T 181.218 . AB=0.421053;ABP=4.03889;AC=1;AF=0.125;AN=8;AO=10;CIGAR=1X;DP=60;DPB=60;DPRA=3.28571;EPP=24.725;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=349;QR=1715;RO=50;RPL=10;RPP=24.725;RPPR=111.584;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:12:12,0:12:417:0:0:0,-3.61236,-37.8633 0/1:19:11,8:11:377:8:280:-19.8204,0,-28.5411 0/0:27:25,2:25:851:2:69:0,-1.57515,-70.3503 0/0:2:2,0:2:70:0:0:0,-0.60206,-6.6474 dDocent_Contig_7721 8 . C T 146.366 . AB=0.0989583;ABP=539.454;AC=1;AF=0.125;AN=8;AO=209;CIGAR=1X;DP=2565;DPB=2565;DPRA=0;EPP=456.848;EPPR=5119;GTI=0;LEN=1;MEANALT=1;MQM=47.0766;MQMR=45.6447;NS=4;NUMALT=1;ODDS=0;PAIRED=0.856459;PAIREDR=0.63837;PAO=0;PQA=0;PQR=0;PRO=0;QA=8070;QR=90526;RO=2356;RPL=0;RPP=456.848;RPPR=5119;RPR=209;RUN=1;SAF=209;SAP=456.848;SAR=0;SRF=2356;SRP=5119;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:819:749,70:749:28817:70:2696:0,-25.5545,-1966.47 0/0:743:684,59:684:26217:59:2281:0,-38.994,-1824.92 0/0:619:577,42:577:22214:42:1619:0,-70.0522,-1630.18 0/1:384:346,38:346:13278:38:1474:-16.3356,0,-957.659 dDocent_Contig_7722 55 . G A 166.708 . AB=0.318182;ABP=9.32731;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=66;DPB=66;DPRA=1;EPP=18.2106;EPPR=131.127;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=275;QR=2233;RO=59;RPL=7;RPP=18.2106;RPPR=131.127;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=59;SRP=131.127;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:32:32,0:32:1207:0:0:0,-9.63296,-108.921 0/1:22:15,7:15:571:7:275:-18.4947,0,-45.1084 0/0:12:12,0:12:455:0:0:0,-3.61236,-41.2976 ./.:.:.:.:.:.:.:. dDocent_Contig_7723 107 . N T 648.643 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=19;CIGAR=1X;DP=19;DPB=19;DPRA=0;EPP=8.61041;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=0.736842;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=697;QR=0;RO=0;RPL=0;RPP=44.2683;RPPR=0;RPR=19;RUN=1;SAF=13;SAP=8.61041;SAR=6;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:104:-9.70233,-0.90309,0 1/1:11:0,11:0:0:11:403:-36.6152,-3.31133,0 1/1:1:0,1:0:0:1:38:-3.79727,-0.30103,0 1/1:4:0,4:0:0:4:152:-14.0499,-1.20412,0 dDocent_Contig_7724 24 . C T 76.1873 . AB=0.162162;ABP=39.6906;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=115;DPB=115;DPRA=1.42308;EPP=16.0391;EPPR=239.701;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=220;QR=4334;RO=109;RPL=0;RPP=16.0391;RPPR=239.701;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=109;SRP=239.701;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:37:31,6:31:1212:6:220:-9.01667,0,-98.2082 0/0:18:18,0:18:715:0:0:0,-5.41854,-64.6745 0/0:35:35,0:35:1390:0:0:0,-10.536,-125.357 0/0:25:25,0:25:1017:0:0:0,-7.52575,-91.8213 dDocent_Contig_7725 209 . N G 58.8692 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=62;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:62:-5.88583,-0.60206,0 dDocent_Contig_7726 7 . T C 516.379 . AB=0.228261;ABP=62.0177;AC=2;AF=0.25;AN=8;AO=23;CIGAR=1M1X1M;DP=119;DPB=117.667;DPRA=0;EPP=52.9542;EPPR=202.786;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=6.93889e-18;PAIRED=1;PAIREDR=0.98913;PAO=0;PQA=0;PQR=0;PRO=0;QA=889;QR=3529;RO=92;RPL=0;RPP=52.9542;RPPR=202.786;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=92;SRP=202.786;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:27:25,0,2:25:955:0,2:0,76:0,-7.52575,-85.8848,-0.913136,-79.6521,-79.05 0|0:39:34,4,1:34:1310:4,1:156,39:-2.58849,0,-106.359,-9.61763,-104.357,-116.88 0|1:23:13,0,10:13:494:0,10:0,389:-28.4447,-32.3581,-72.8655,0,-40.8922,-37.8819 0|1:30:20,0,10:20:770:0,10:0,385:-25.9754,-31.996,-95.2192,0,-63.6079,-60.5976 dDocent_Contig_7727 29 . C T 69.8798 . AB=0.375;ABP=4.09604;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=50;DPB=50;DPRA=0.571429;EPP=9.52472;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=119;QR=1859;RO=47;RPL=0;RPP=9.52472;RPPR=105.07;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:20:20,0:20:793:0:0:0,-6.0206,-71.6923 0/1:8:5,3:5:200:3:119:-8.68694,0,-15.9713 0/0:14:14,0:14:545:0:0:0,-4.21442,-49.3903 0/0:8:8,0:8:321:0:0:0,-2.40824,-29.2575 dDocent_Contig_7729 1 . N A 207.939 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=6;CIGAR=1X1M5I2M;DP=6;DPB=13.5;DPRA=0;EPP=16.0391;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=8.76405;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=227;QR=0;RO=0;RPL=0;RPP=16.0391;RPPR=0;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. 1|1:6:0,6:0:0:6:227:-20.7938,-1.80618,0 .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. dDocent_Contig_7730 20 . T G 94.0646 . AB=0.131148;ABP=75.0961;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X;DP=175;DPB=175;DPRA=0.785714;EPP=14.8328;EPPR=363.475;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=0.777778;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=356;QR=6658;RO=166;RPL=0;RPP=22.5536;RPPR=363.475;RPR=9;RUN=1;SAF=8;SAP=14.8328;SAR=1;SRF=166;SRP=363.475;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:61:53,8:53:2106:8:320:-10.8043,0,-171.357 0/0:83:83,0:83:3352:0:0:0,-24.9855,-301.707 0/0:15:15,0:15:606:0:0:0,-4.51545,-54.8786 0/0:16:15,1:15:594:1:36:0,-1.2182,-50.198 dDocent_Contig_7731 108 . G A 192.142 . AB=0.285714;ABP=19.7617;AC=2;AF=0.25;AN=8;AO=16;CIGAR=1X;DP=84;DPB=84;DPRA=0;EPP=37.7539;EPPR=150.67;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=490;QR=2247;RO=68;RPL=0;RPP=37.7539;RPPR=150.67;RPR=16;RUN=1;SAF=0;SAP=37.7539;SAR=16;SRF=0;SRP=150.67;SRR=68;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:21,3:21:652:3:102:-2.29223,0,-51.7477 0/1:18:9,9:9:311:9:282:-20.2674,0,-22.9068 0/0:24:21,3:21:703:3:72:0,-0.506247,-56.8651 0/0:18:17,1:17:581:1:34:0,-2.01963,-49.2149 dDocent_Contig_7732 149 . T C 72.3105 . AB=0.185185;ABP=26.2531;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=43;DPB=43;DPRA=0.84375;EPP=13.8677;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=190;QR=1483;RO=38;RPL=0;RPP=13.8677;RPPR=85.5263;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=85.5263;SRR=38;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:16:16,0:16:605:0:0:0,-4.81648,-54.7816 ./.:.:.:.:.:.:.:. 0/1:16:12,4:12:477:4:150:-9.04802,0,-38.4658 0/1:11:10,1:10:401:1:40:-0.684349,0,-33.1388 dDocent_Contig_7733 19 . G A 517.142 . AB=0.291667;ABP=30.1537;AC=3;AF=0.375;AN=8;AO=21;CIGAR=1X;DP=108;DPB=108;DPRA=0.666667;EPP=48.6112;EPPR=191.928;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.977011;PAO=0;PQA=0;PQR=0;PRO=0;QA=846;QR=3452;RO=87;RPL=0;RPP=48.6112;RPPR=191.928;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=87;SRP=191.928;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:36:36,0:36:1427:0:0:0,-10.8371,-128.685 0/1:33:27,6:27:1074:6:244:-12.4048,0,-87.0126 0/1:27:13,14:13:522:14:561:-42.7041,0,-39.1974 0/1:12:11,1:11:429:1:41:-0.482207,0,-35.345 dDocent_Contig_7735 13 . T C 101.176 . AB=0.3125;ABP=7.89611;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=81;DPB=81;DPRA=1.53125;EPP=16.0391;EPPR=165.871;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=220;QR=2861;RO=75;RPL=0;RPP=16.0391;RPPR=165.871;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=75;SRP=165.871;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:33:32,1:32:1227:1:39:0,-6.03743,-106.821 0/0:18:18,0:18:688:0:0:0,-5.41854,-62.2511 0/1:16:11,5:11:428:5:181:-11.8165,0,-34.0577 0/0:14:14,0:14:518:0:0:0,-4.21442,-46.9526 dDocent_Contig_7736 107 . N G 71.2141 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=70;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1:0,1:0:0:1:34:-3.39891,-0.30103,0 ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:36:-3.41967,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_7738 151 . C T 943.624 . AB=0.557377;ABP=4.7546;AC=4;AF=0.5;AN=8;AO=34;CIGAR=1X;DP=61;DPB=61;DPRA=0;EPP=76.8404;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=57.9412;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.764706;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1346;QR=1065;RO=27;RPL=0;RPP=76.8404;RPPR=61.6401;RPR=34;RUN=1;SAF=0;SAP=76.8404;SAR=34;SRF=0;SRP=61.6401;SRR=27;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:11,6:11:429:6:233:-16.2176,0,-33.8398 0/1:23:8,15:8:313:15:602:-44.9435,0,-21.6081 0/1:14:2,12:2:79:12:471:-38.5177,0,-3.28282 0/1:7:6,1:6:244:1:40:-1.88847,0,-20.2316 dDocent_Contig_7739 16 . A T 293.203 . AB=0.213333;ABP=56.5443;AC=4;AF=0.5;AN=8;AO=16;CIGAR=1X3M;DP=75;DPB=75;DPRA=0;EPP=37.7539;EPPR=118.098;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.962264;PAO=0;PQA=0;PQR=0;PRO=0;QA=627;QR=2084;RO=53;RPL=0;RPP=37.7539;RPPR=118.098;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:25:17,4,4:17:665:4,4:161,158:-8.15533,0,-53.4623,-0.275001,-41.6641,-53.7313 0|1:32:22,2,8:22:859:2,8:81,307:-18.5551,-18.4943,-88.508,0,-63.9172,-68.1894 0|1:12:10,0,2:10:399:0,2:0,80:-3.97922,-6.98951,-39.8499,0,-33.2598,-32.6577 0|1:6:4,0,2:4:161:0,2:0,82:-5.9735,-7.17762,-20.442,0,-13.6714,-13.0693 dDocent_Contig_7740 34 . T A 672.226 . AB=0.181818;ABP=177.123;AC=3;AF=0.375;AN=8;AO=36;CIGAR=1X4M;DP=291;DPB=291;DPRA=0.709677;EPP=81.1833;EPPR=508.963;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.805556;PAIREDR=0.828326;PAO=0;PQA=0;PQR=0;PRO=0;QA=1427;QR=9200;RO=233;RPL=0;RPP=81.1833;RPPR=508.963;RPR=36;RUN=1;SAF=36;SAP=81.1833;SAR=0;SRF=233;SRP=508.963;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:50:28,5,17:28:1115:5,17:186,671:-46.7985,-40.0128,-130.325,0,-76.6212,-86.7193 0|1:95:78,5,12:78:3075:5,12:198,482:-16.2409,-23.4259,-274.901,0,-236.688,-249.372 0|0:93:84,5,0:84:3321:5,0:198,0:0,-8.9862,-280.779,-25.2865,-282.285,-298.582 0|1:53:43,3,7:43:1689:3,7:119,274:-9.58119,-12.7279,-150.738,0,-129.112,-136.801 dDocent_Contig_7742 121 . G A 493.277 . AB=0.353846;ABP=15.0703;AC=3;AF=0.375;AN=8;AO=23;CIGAR=1X;DP=68;DPB=68;DPRA=7.22222;EPP=52.9542;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=814;QR=1484;RO=45;RPL=0;RPP=52.9542;RPPR=100.727;RPR=23;RUN=1;SAF=0;SAP=52.9542;SAR=23;SRF=0;SRP=100.727;SRR=45;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:37:22,15:22:720:15:528:-36.7133,0,-53.9679 0/1:14:9,5:9:303:5:180:-12.3374,0,-23.3829 0/1:14:11,3:11:356:3:106:-5.67474,0,-28.1389 0/0:3:3,0:3:105:0:0:0,-0.90309,-9.79616 dDocent_Contig_7743 129 . G A 276.704 . AB=0.291667;ABP=21.1059;AC=3;AF=0.375;AN=8;AO=14;CIGAR=1X;DP=74;DPB=74;DPRA=0.615385;EPP=33.4109;EPPR=133.299;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=516;QR=2189;RO=60;RPL=0;RPP=33.4109;RPPR=133.299;RPR=14;RUN=1;SAF=0;SAP=33.4109;SAR=14;SRF=0;SRP=133.299;SRR=60;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:26:26,0:26:951:0:0:0,-7.82678,-85.9079 0/1:15:11,4:11:407:4:146:-8.98226,0,-32.4628 0/1:11:5,6:5:182:6:222:-17.0267,0,-13.4238 0/1:22:18,4:18:649:4:148:-7.05931,0,-52.1162 dDocent_Contig_7744 209 . N G 121.769 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=123;QR=0;RO=0;RPL=3;RPP=9.52472;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:1:0,1:0:0:1:41:-4.09457,-0.30103,0 1/1:2:0,2:0:0:2:82:-7.77968,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_7745 59 . T C 590.639 . AB=0.337209;ABP=22.806;AC=4;AF=0.5;AN=8;AO=29;CIGAR=1X;DP=86;DPB=86;DPRA=0;EPP=57.5966;EPPR=126.784;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.931034;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1011;QR=1984;RO=57;RPL=29;RPP=65.983;RPPR=126.784;RPR=0;RUN=1;SAF=28;SAP=57.5966;SAR=1;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:12,8:12:419:8:279:-19.4284,0,-32.0221 0/1:31:21,10:21:728:10:347:-22.2334,0,-56.5078 0/1:16:10,6:10:348:6:210:-14.4259,0,-26.8379 0/1:19:14,5:14:489:5:175:-10.3741,0,-38.6205 dDocent_Contig_7746 1 . N G 75.9266 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=80;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:80:-7.59157,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_7748 21 . T C 856.073 . AB=0.406393;ABP=19.6781;AC=3;AF=0.375;AN=8;AO=99;CIGAR=1X;DP=306;DPB=306;DPRA=0;EPP=217.986;EPPR=452.505;GTI=0;LEN=1;MEANALT=1;MQM=19.4848;MQMR=59.3768;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.990338;PAO=0;PQA=0;PQR=0;PRO=0;QA=3959;QR=8290;RO=207;RPL=0;RPP=217.986;RPPR=452.505;RPR=99;RUN=1;SAF=99;SAP=217.986;SAR=0;SRF=207;SRP=452.505;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:107:73,34:73:2918:34:1346:-29.2662,0,-230.478 0/0:87:77,10:77:3088:10:395:0,-12.3131,-264.068 0/1:75:42,33:42:1677:33:1328:-31.8104,0,-127.239 0/1:37:15,22:15:607:22:890:-29.9286,0,-43.8222 dDocent_Contig_7749 47 . C A 63.6233 . AB=0.272727;ABP=7.94546;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=32;DPB=32;DPRA=1.57143;EPP=9.52472;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=1171;RO=29;RPL=0;RPP=9.52472;RPPR=65.983;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:10:10,0:10:403:0:0:0,-3.0103,-36.6301 0/1:11:8,3:8:321:3:122:-8.06116,0,-25.9463 0/0:8:8,0:8:327:0:0:0,-2.40824,-29.8001 0/0:3:3,0:3:120:0:0:0,-0.90309,-11.1873 dDocent_Contig_7750 9 . A T 154.356 . AB=0.25;ABP=20.3821;AC=2;AF=0.25;AN=8;AO=9;CIGAR=1X;DP=106;DPB=106;DPRA=0.737374;EPP=22.5536;EPPR=213.643;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.8351;NS=4;NUMALT=1;ODDS=0;PAIRED=0.555556;PAIREDR=0.56701;PAO=0;PQA=0;PQR=0;PRO=0;QA=347;QR=3699;RO=97;RPL=0;RPP=22.5536;RPPR=213.643;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=97;SRP=213.643;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:33:33,0:33:1250:0:0:0,-9.93399,-112.679 0/0:41:40,1:40:1524:1:39:0,-8.44566,-133.533 0/1:22:18,4:18:695:4:156:-7.79463,0,-56.2612 0/1:10:6,4:6:230:4:152:-11.0389,0,-18.0566 dDocent_Contig_7751 42 . A G 37.4897 . AB=0.142857;ABP=26.2761;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=78;DPB=78;DPRA=1.10526;EPP=9.52472;EPPR=163.699;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.972973;PAO=0;PQA=0;PQR=0;PRO=0;QA=123;QR=2950;RO=74;RPL=0;RPP=9.52472;RPPR=163.699;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=74;SRP=163.699;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:17,3:17:676:3:123:-5.14684,0,-54.8826 0/0:19:19,0:19:769:0:0:0,-5.71957,-69.5296 0/0:25:25,0:25:1007:0:0:0,-7.52575,-90.9251 0/0:13:13,0:13:498:0:0:0,-3.91339,-45.1555 dDocent_Contig_7752 13 . A G 180.714 . AB=0.189655;ABP=51.5315;AC=3;AF=0.375;AN=8;AO=11;CIGAR=1X2M2X;DP=71;DPB=71;DPRA=1.48718;EPP=26.8965;EPPR=133.299;GTI=0;LEN=1;MEANALT=1;MQM=48.1818;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=432;QR=2389;RO=60;RPL=0;RPP=26.8965;RPPR=133.299;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:12:10,2:10:406:2:80:-3.88981,0,-33.288 0|1:23:16,7:16:627:7:272:-17.574,0,-49.842 0|1:23:21,2:21:836:2:80:-0.578475,0,-68.6326 0|0:13:13,0:13:520:0:0:0,-3.91339,-47.1482 dDocent_Contig_7753 9 . A G 3865.24 . AB=0.179372;ABP=202.133;AC=1;AF=0.125;AN=8;AO=40;CIGAR=2X;DP=223;DPB=223;DPRA=0;EPP=89.8692;EPPR=141.985;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.4;PAIREDR=0.90625;PAO=0;PQA=0;PQR=0;PRO=0;QA=1565;QR=2478;RO=64;RPL=0;RPP=89.8692;RPPR=141.985;RPR=40;RUN=1;SAF=40;SAP=89.8692;SAR=0;SRF=64;SRP=141.985;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:70:21,14,35:21:808:14,35:554,1400:-104.078,-64.8006,-126.923,0,-20.7304,-55.7941 1|0:52:5,17,30:5:196:17,30:653,1194:-131.126,-79.0319,-90.0337,-37.4734,0,-44.5627 0|0:59:21,1,37:21:817:1,37:39,1488:-109.639,-112.754,-179.598,0,-63.9357,-56.0035 0|0:42:17,8,17:17:657:8,17:319,681:-49.0796,-27.9223,-79.4742,0,-27.6773,-48.8351 dDocent_Contig_7754 145 . A G 246.35 . AB=0.357143;ABP=7.97367;AC=1;AF=0.125;AN=8;AO=10;CIGAR=1X;DP=53;DPB=53;DPRA=3.36;EPP=24.725;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=379;QR=1637;RO=43;RPL=0;RPP=24.725;RPPR=96.3836;RPR=10;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=96.3836;SRR=43;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:18,10:18:676:10:379:-26.0323,0,-52.729 0/0:1:1,0:1:39:0:0:0,-0.30103,-3.89656 0/0:9:9,0:9:338:0:0:0,-2.70927,-30.7704 0/0:15:15,0:15:584:0:0:0,-4.51545,-52.9032 dDocent_Contig_7755 10 . G C 56.2955 . AB=0.111111;ABP=121.235;AC=2;AF=0.25;AN=8;AO=11;CIGAR=1X;DP=130;DPB=130;DPRA=1.33333;EPP=26.8965;EPPR=261.416;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.818182;PAIREDR=0.865546;PAO=0;PQA=0;PQR=0;PRO=0;QA=434;QR=4759;RO=119;RPL=0;RPP=26.8965;RPPR=261.416;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=119;SRP=261.416;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:44:39,5:39:1562:5:198:-4.95115,0,-127.574 0/0:26:26,0:26:1053:0:0:0,-7.82678,-95.0598 0/1:46:41,5:41:1620:5:195:-4.07449,0,-132.181 0/0:14:13,1:13:524:1:41:0,-0.119853,-43.4127 dDocent_Contig_7756 27 . A G 45.7557 . AB=0.4;ABP=3.44459;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=93;DPB=93;DPRA=0.453125;EPP=9.52472;EPPR=198.443;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=123;QR=3591;RO=90;RPL=0;RPP=9.52472;RPPR=198.443;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=90;SRP=198.443;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:33:33,0:33:1311:0:0:0,-9.93399,-118.255 0/0:31:31,0:31:1242:0:0:0,-9.33193,-112.052 0/0:24:23,1:23:926:1:41:0,-3.13015,-79.549 0/1:5:3,2:3:112:2:82:-6.27453,0,-8.94007 dDocent_Contig_7757 28 . A G 462.252 . AB=0.64;ABP=7.26639;AC=2;AF=0.25;AN=8;AO=16;CIGAR=1X;DP=46;DPB=46;DPRA=1.19048;EPP=37.7539;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.8125;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=627;QR=1188;RO=30;RPL=0;RPP=37.7539;RPPR=68.1545;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:6,9:6:236:9:352:-27.5207,0,-17.0965 0/1:10:3,7:3:122:7:275:-22.1024,0,-8.36219 0/0:12:12,0:12:486:0:0:0,-3.61236,-44.0902 0/0:9:9,0:9:344:0:0:0,-2.70927,-31.3113 dDocent_Contig_7758 42 . A G 61.7739 . AB=0.272727;ABP=7.94546;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=50;DPB=50;DPRA=0.846154;EPP=9.52472;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=120;QR=1858;RO=47;RPL=0;RPP=9.52472;RPPR=105.07;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:17:17,0:17:652:0:0:0,-5.11751,-59.0039 0/0:10:10,0:10:397:0:0:0,-3.0103,-36.0874 0/1:11:8,3:8:323:3:120:-7.87636,0,-26.1273 0/0:12:12,0:12:486:0:0:0,-3.61236,-44.0913 dDocent_Contig_7759 11 . G A 506.011 . AB=0.12;ABP=97.0785;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X2M1X;DP=90;DPB=90;DPRA=0;EPP=22.5536;EPPR=139.813;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=359;QR=2476;RO=63;RPL=0;RPP=22.5536;RPPR=139.813;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=63;SRP=139.813;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:48:37,1,10:37:1461:1,10:35,405:-22.3068,-30.6021,-150.506,0,-117.409,-117.246 0|1:27:16,8,3:16:617:8,3:324,119:-21.906,0,-48.24,-16.929,-40.8508,-66.6706 0|0:9:6,0,3:6:238:0,3:0,122:-8.66322,-10.4694,-30.0549,0,-19.9883,-19.0853 0|0:6:4,0,2:4:160:0,2:0,73:-5.12301,-6.32713,-19.5305,0,-13.5797,-12.9776 dDocent_Contig_7760 9 . A G 1399.44 . AB=0.412214;ABP=11.7791;AC=4;AF=0.5;AN=8;AO=54;CIGAR=1X;DP=131;DPB=131;DPRA=0;EPP=120.27;EPPR=170.214;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.961;NS=4;NUMALT=1;ODDS=0;PAIRED=0.592593;PAIREDR=0.532468;PAO=0;PQA=0;PQR=0;PRO=0;QA=2060;QR=2941;RO=77;RPL=0;RPP=120.27;RPPR=170.214;RPR=54;RUN=1;SAF=54;SAP=120.27;SAR=0;SRF=77;SRP=170.214;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:42:26,16:26:997:16:600:-41.6892,0,-77.3962 0/1:42:20,22:20:771:22:846:-63.8188,0,-57.0753 0/1:26:18,8:18:686:8:305:-19.9824,0,-54.2462 0/1:21:13,8:13:487:8:309:-21.8513,0,-37.8513 dDocent_Contig_7761 19 . T A 217.625 . AB=0.166667;ABP=153.566;AC=3;AF=0.375;AN=8;AO=35;CIGAR=1X1M1X;DP=241;DPB=241;DPRA=0;EPP=79.0118;EPPR=401.459;GTI=0;LEN=1;MEANALT=1.25;MQM=47.7429;MQMR=59.3892;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.551724;PAO=0;PQA=0;PQR=0;PRO=0;QA=1102;QR=8052;RO=203;RPL=0;RPP=79.0118;RPPR=443.819;RPR=35;RUN=1;SAF=0;SAP=79.0118;SAR=35;SRF=198;SRP=401.459;SRR=5;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:59:47,12:47:1870:12:372:-15.979,0,-150.744 0|1:68:59,9:59:2349:9:295:-6.31522,0,-191.096 0|0:85:73,9:73:2897:9:287:0,-1.01225,-236.664 0|1:29:24,5:24:936:5:148:-4.86594,0,-74.3374 dDocent_Contig_7762 24 . G T 1592.88 . 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T C 198.437 . AB=0.215686;ABP=38.8183;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X;DP=85;DPB=85;DPRA=0;EPP=29.068;EPPR=161.528;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=461;QR=2748;RO=73;RPL=0;RPP=29.068;RPPR=161.528;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=73;SRP=161.528;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:34:33,1:33:1247:1:39:0,-6.33846,-108.625 0/1:36:28,8:28:1067:8:305:-16.9716,0,-85.4995 0/1:15:12,3:12:434:3:117:-6.39493,0,-34.8749 ./.:.:.:.:.:.:.:. dDocent_Contig_7764 10 . G A 509.351 . 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AB=0.185355;ABP=378.794;AC=2;AF=0.25;AN=8;AO=104;CIGAR=1X;DP=665;DPB=665;DPRA=0;EPP=228.843;EPPR=1182.14;GTI=0;LEN=1;MEANALT=1.75;MQM=60;MQMR=59.925;NS=4;NUMALT=1;ODDS=0;PAIRED=0.980769;PAIREDR=0.967093;PAO=0;PQA=0;PQR=0;PRO=0;QA=3322;QR=20836;RO=547;RPL=0;RPP=228.843;RPPR=1190.81;RPR=104;RUN=1;SAF=104;SAP=228.843;SAR=0;SRF=546;SRP=1182.14;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:225:169,46:169:6430:46:1475:-67.915,0,-513.414 0/1:212:174,35:174:6613:35:1142:-39.7635,0,-531.75 0/0:149:132,16:132:5047:16:473:0,-2.09395,-411.398 0/0:79:72,7:72:2746:7:232:0,-2.58296,-226.124 dDocent_Contig_7767 20 . A G 700.667 . AB=0.361111;ABP=15.074;AC=1;AF=0.125;AN=8;AO=31;CIGAR=1X;DP=263;DPB=263;DPRA=1.97368;EPP=70.3259;EPPR=506.792;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.978448;PAO=0;PQA=0;PQR=0;PRO=0;QA=1240;QR=9304;RO=232;RPL=0;RPP=70.3259;RPPR=506.792;RPR=31;RUN=1;SAF=31;SAP=70.3259;SAR=0;SRF=232;SRP=506.792;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:111:107,4:107:4280:4:164:0,-18.2644,-370.006 0/1:72:46,26:46:1850:26:1035:-71.7656,0,-145.031 0/0:42:41,1:41:1659:1:41:0,-8.54869,-145.438 0/0:38:38,0:38:1515:0:0:0,-11.4391,-136.594 dDocent_Contig_7768 34 . T A 1682.19 . AB=0.537037;ABP=4.2971;AC=4;AF=0.5;AN=8;AO=58;CIGAR=1X5M;DP=108;DPB=107.667;DPRA=0;EPP=128.956;EPPR=107.241;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2295;QR=1863;RO=48;RPL=0;RPP=128.956;RPPR=107.241;RPR=58;RUN=1;SAF=58;SAP=128.956;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:56:20,0,36:20:769:0,36:0,1434:-112.454,-118.475,-181.593,0,-63.5068,-52.6697 0|1:33:20,2,11:20:781:2,11:74,432:-29.5269,-29.4979,-93.0962,0,-58.1691,-60.909 0|1:14:6,0,8:6:233:0,8:0,309:-23.9535,-25.7597,-44.9053,0,-19.5327,-17.1245 0|1:5:2,0,3:2:80:0,3:0,120:-9.68216,-10.2842,-16.8744,0,-6.98973,-6.08664 dDocent_Contig_7769 8 . C G 636.328 . AB=0.470588;ABP=3.3935;AC=1;AF=0.125;AN=8;AO=27;CIGAR=1X;DP=219;DPB=219;DPRA=0.970238;EPP=61.6401;EPPR=419.933;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.8854;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.989583;PAO=0;PQA=0;PQR=0;PRO=0;QA=1010;QR=7232;RO=192;RPL=0;RPP=61.6401;RPPR=419.933;RPR=27;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=192;SRP=419.933;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:63:62,1:62:2386:1:39:0,-15.0683,-210.738 0/1:51:27,24:27:1018:24:893:-65.3317,0,-76.5748 0/0:56:56,0:56:2065:0:0:0,-16.8577,-186.088 0/0:49:47,2:47:1763:2:78:0,-7.347,-151.524 dDocent_Contig_7771 12 . G A 1595.94 . AB=0.0689655;ABP=49.8093;AC=4;AF=0.5;AN=8;AO=2;CIGAR=1X2M;DP=88;DPB=88;DPRA=0;EPP=7.35324;EPPR=70.3259;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=79;QR=1188;RO=31;RPL=0;RPP=7.35324;RPPR=70.3259;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:21:6,15,0:6:227:15,0:594,0:-47.4735,0,-14.4717,-49.2797,-18.9871,-67.8837 0|1:29:12,14,2:12:463:14,2:551,79:-41.7016,0,-33.8055,-38.8131,-31.5181,-76.2313 0|1:13:7,6,0:7:261:6,0:239,0:-17.9712,0,-19.9287,-20.0784,-21.7349,-41.4271 0|1:25:6,19,0:6:237:19,0:745,0:-59.8455,0,-14.1778,-61.6517,-19.8973,-81.1551 dDocent_Contig_7772 38 . A T 1060.92 . AB=0.14916;ABP=511.919;AC=4;AF=0.5;AN=8;AO=71;CIGAR=1X2M1X;DP=476;DPB=476;DPRA=0;EPP=157.185;EPPR=841.199;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=53.7694;NS=4;NUMALT=2;ODDS=5.55112e-17;PAIRED=0.56338;PAIREDR=0.841969;PAO=0;PQA=0;PQR=0;PRO=0;QA=2790;QR=15127;RO=386;RPL=0;RPP=157.185;RPPR=841.199;RPR=71;RUN=1;SAF=71;SAP=157.185;SAR=0;SRF=386;SRP=841.199;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:137:99,28,9:99:3835:28,9:1093,347:-60.0486,0,-296.764,-61.3584,-276.699,-363.837 0|1:161:132,23,0:132:5208:23,0:909,0:-35.0695,0,-395.748,-74.8055,-402.672,-477.462 0|1:119:104,14,0:104:4103:14,0:553,0:-14.3969,0,-312.031,-45.704,-316.245,-361.752 0|1:59:51,6,0:51:1981:6,0:235,0:-3.97373,0,-156.599,-19.3263,-158.405,-177.729 dDocent_Contig_7773 146 . G T 392.74 . AB=0.583333;ABP=8.07707;AC=4;AF=0.5;AN=8;AO=49;CIGAR=1X1M1X2M1I2M1X3M1X2M1X1M1X1M1X1M1X;DP=84;DPB=86.3333;DPRA=0;EPP=109.412;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1.25;MQM=16.1429;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1923;QR=1158;RO=34;RPL=0;RPP=109.412;RPPR=76.8404;RPR=49;RUN=1;SAF=49;SAP=109.412;SAR=0;SRF=0;SRP=76.8404;SRR=34;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:33:15,18:15:510:18:705:-16.1109,0,-36.2909 0|1:24:8,15:8:270:15:593:-15.3615,0,-17.6062 0|1:17:6,11:6:205:11:433:-10.8616,0,-13.6677 0|1:10:5,5:5:173:5:192:-4.33733,0,-12.8999 dDocent_Contig_7774 55 . G A 299.216 . AB=0.333333;ABP=12.42;AC=3;AF=0.375;AN=8;AO=13;CIGAR=1M5I1M1X1M1X;DP=52;DPB=66;DPRA=1;EPP=31.2394;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.947368;PAO=0;PQA=0;PQR=0;PRO=0;QA=511;QR=1476;RO=38;RPL=13;RPP=31.2394;RPPR=85.5263;RPR=0;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:16:13,3:13:510:3:117:-6.09343,0,-41.4288 0|1:15:7,8:7:279:8:315:-24.2003,0,-20.9655 0|0:13:13,0:13:496:0:0:0,-3.91339,-44.983 0|1:8:5,2:5:191:2:79:-5.02564,0,-15.0933 dDocent_Contig_7775 98 . N T 146.171 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=5;CIGAR=1X;DP=5;DPB=5;DPRA=0;EPP=13.8677;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=148;QR=0;RO=0;RPL=5;RPP=13.8677;RPPR=0;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1:0,1:0:0:1:29:-2.89966,-0.30103,0 ./.:.:.:.:.:.:.:. 1/1:1:0,1:0:0:1:20:-1.99996,-0.30103,0 1/1:3:0,3:0:0:3:99:-9.23712,-0.90309,0 dDocent_Contig_7776 34 . C A 33.9021 . AB=0.25;ABP=7.35324;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X;DP=118;DPB=118;DPRA=0.218182;EPP=7.35324;EPPR=254.901;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=0.948276;PAO=0;PQA=0;PQR=0;PRO=0;QA=79;QR=4655;RO=116;RPL=0;RPP=7.35324;RPPR=254.901;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=116;SRP=254.901;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:53:53,0:53:2124:0:0:0,-15.9546,-191.339 0/0:46:46,0:46:1844:0:0:0,-13.8474,-166.16 0/0:11:11,0:11:443:0:0:0,-3.31133,-40.2253 0/1:8:6,2:6:244:2:79:-5.089,0,-19.9306 dDocent_Contig_7777 30 . C G 2668.9 . AB=0.478723;ABP=3.74952;AC=3;AF=0.375;AN=8;AO=90;CIGAR=1M1D7M1X11M;DP=188;DPB=183;DPRA=0;EPP=198.443;EPPR=181.071;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3513;QR=3234;RO=82;RPL=0;RPP=198.443;RPPR=181.071;RPR=90;RUN=1;SAF=90;SAP=198.443;SAR=0;SRF=82;SRP=181.071;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:20:8,4,7:8:313:4,7:160,284:-21.0224,-10.251,-34.7779,0,-12.5522,-23.6283 0|1:81:47,31,2:47:1855:31,2:1194,82:-83.8552,0,-143.287,-91.234,-145.85,-243.27 0|1:58:9,48,0:9:355:48,0:1881,0:-151.944,0,-14.7451,-154.654,-29.1945,-183.862 0|1:29:18,7,4:18:711:7,4:278,160:-17.4661,0,-56.3962,-9.70385,-45.3228,-67.0057 dDocent_Contig_7778 34 . C T 199.941 . AB=0.421053;ABP=4.03889;AC=2;AF=0.25;AN=8;AO=8;CIGAR=1X3M3D1M;DP=32;DPB=29;DPRA=1.46154;EPP=3.0103;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=315;QR=938;RO=24;RPL=8;RPP=20.3821;RPPR=55.1256;RPR=0;RUN=1;SAF=4;SAP=3.0103;SAR=4;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:3:3,0:3:120:0:0:0,-0.90309,-11.1877 0|0:10:10,0:10:380:0:0:0,-3.0103,-34.5511 0|1:12:6,6:6:239:6:235:-17.9075,0,-18.273 0|1:7:5,2:5:199:2:80:-5.48436,0,-16.1815 dDocent_Contig_7780 8 . C T 8696.39 . AB=0.0436681;ABP=831.413;AC=0;AF=0;AN=8;AO=20;CIGAR=1X2M1I2M1X1M;DP=501;DPB=504.857;DPRA=0;EPP=46.4397;EPPR=302.673;GTI=0;LEN=1;MEANALT=6.33333;MQM=9.2;MQMR=59.5652;NS=4;NUMALT=5;ODDS=0;PAIRED=0;PAIREDR=0.688406;PAO=0;PQA=0;PQR=0;PRO=0;QA=184;QR=5421;RO=138;RPL=0;RPP=46.4397;RPPR=302.673;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=138;SRP=302.673;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:199:56,13,0,0,12,111:56:2192:13,0,0,12,111:117,0,0,468,4296:-328.959,-342.419,-518.381,-345.817,-522.295,-525.7,-345.817,-522.295,-525.7,-525.7,-323.107,-499.585,-502.988,-502.988,-499.376,0,-176.624,-180.006,-180.006,-157.299,-146.592 0|0:154:37,6,0,5,7,94:37:1454:6,0,5,7,94:58,0,191,284,3711:-290.957,-300.189,-417.043,-302.095,-418.849,-420.759,-286.428,-403.183,-405.092,-403.587,-287.852,-404.606,-406.514,-390.848,-404.407,0,-116.852,-118.744,-103.074,-104.504,-90.4473 0|0:105:30,1,6,6,2,60:30:1182:1,6,6,2,60:9,204,234,80,2349:-182.263,-191.035,-287.983,-176.371,-273.359,-271.813,-172.058,-269.049,-254.384,-267.503,-190.105,-287.092,-272.428,-268.118,-286.751,0,-97.0505,-82.3864,-78.0684,-96.1227,-79.2454 0|0:43:15,0,0,0,4,24:15:593:0,0,0,4,24:0,0,0,164,963:-74.8577,-79.3732,-128.188,-79.3732,-128.188,-128.188,-79.3732,-128.188,-128.188,-128.188,-77.0222,-125.821,-125.821,-125.821,-124.617,0,-49.0341,-49.0341,-49.0341,-46.7023,-41.8093 dDocent_Contig_7781 19 . C T 49.9698 . AB=0.214286;ABP=12.937;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X2M1X2M1X;DP=31;DPB=31;DPRA=2.47059;EPP=9.52472;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=117;QR=1110;RO=28;RPL=0;RPP=9.52472;RPPR=63.8115;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:6:6,0:6:239:0:0:0,-1.80618,-21.8848 0|1:14:11,3:11:439:3:117:-6.69579,0,-35.6519 0|0:8:8,0:8:316:0:0:0,-2.40824,-28.8059 0|0:3:3,0:3:116:0:0:0,-0.90309,-10.8174 dDocent_Contig_7782 21 . A G 104.321 . AB=0.206897;ABP=24.6501;AC=2;AF=0.25;AN=8;AO=6;CIGAR=1X;DP=46;DPB=46;DPRA=1.70588;EPP=16.0391;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=0.833333;PAIREDR=0.875;PAO=0;PQA=0;PQR=0;PRO=0;QA=242;QR=1571;RO=40;RPL=0;RPP=16.0391;RPPR=89.8692;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:13:13,0:13:503:0:0:0,-3.91339,-45.612 0/1:14:11,3:11:439:3:119:-6.88059,0,-35.6491 0/1:15:12,3:12:472:3:123:-6.94934,0,-38.3103 0/0:4:4,0:4:157:0:0:0,-1.20412,-14.5064 dDocent_Contig_7783 147 . T C 281.152 . AB=0.818182;ABP=12.6832;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X;DP=68;DPB=68;DPRA=0.578947;EPP=22.5536;EPPR=131.127;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=364;QR=2302;RO=59;RPL=0;RPP=22.5536;RPPR=131.127;RPR=9;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=131.127;SRR=59;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:17:17,0:17:666:0:0:0,-5.11751,-60.2673 0/1:11:2,9:2:81:9:364:-29.8136,0,-4.3744 0/0:35:35,0:35:1352:0:0:0,-10.536,-121.932 0/0:5:5,0:5:203:0:0:0,-1.50515,-18.6531 dDocent_Contig_7784 65 . C T 957.244 . AB=0.322581;ABP=36.9133;AC=4;AF=0.5;AN=8;AO=40;CIGAR=1X;DP=124;DPB=124;DPRA=0;EPP=89.8692;EPPR=185.414;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.625;PAIREDR=0.690476;PAO=0;PQA=0;PQR=0;PRO=0;QA=1545;QR=3388;RO=84;RPL=40;RPP=89.8692;RPPR=185.414;RPR=0;RUN=1;SAF=40;SAP=89.8692;SAR=0;SRF=84;SRP=185.414;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:58:40,18:40:1617:18:690:-44.9503,0,-128.295 0/1:31:23,8:23:929:8:315:-19.3805,0,-74.5768 0/1:26:16,10:16:642:10:383:-26.9923,0,-50.2853 0/1:9:5,4:5:200:4:157:-11.7992,0,-15.6703 dDocent_Contig_7785 28 . G A 30.0409 . AB=0.142857;ABP=26.2761;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=48;DPB=48;DPRA=2.33333;EPP=9.52472;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=115;QR=1807;RO=45;RPL=0;RPP=9.52472;RPPR=100.727;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:18,3:18:714:3:115:-4.40158,0,-58.2623 0/0:7:7,0:7:286:0:0:0,-2.10721,-26.1148 0/0:11:11,0:11:447:0:0:0,-3.31133,-40.5859 0/0:9:9,0:9:360:0:0:0,-2.70927,-32.7627 dDocent_Contig_7786 7 . T C 2484.41 . AB=0.514451;ABP=3.3241;AC=4;AF=0.5;AN=8;AO=89;CIGAR=1X;DP=173;DPB=173;DPRA=0;EPP=196.271;EPPR=185.414;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.988095;PAO=0;PQA=0;PQR=0;PRO=0;QA=3407;QR=3244;RO=84;RPL=0;RPP=196.271;RPPR=185.414;RPR=89;RUN=1;SAF=89;SAP=196.271;SAR=0;SRF=84;SRP=185.414;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:49:16,33:16:614:33:1270:-99.8411,0,-40.8493 0/1:76:48,28:48:1856:28:1068:-73.546,0,-144.409 0/1:36:12,24:12:463:24:914:-71.7389,0,-31.1844 0/1:12:8,4:8:311:4:155:-10.7131,0,-24.742 dDocent_Contig_7787 23 . G T 158.372 . AB=0.173333;ABP=72.5264;AC=3;AF=0.375;AN=8;AO=13;CIGAR=1X;DP=115;DPB=115;DPRA=0.625;EPP=31.2394;EPPR=224.5;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.970588;PAO=0;PQA=0;PQR=0;PRO=0;QA=475;QR=3791;RO=102;RPL=0;RPP=31.2394;RPPR=224.5;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=102;SRP=224.5;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:30,6:30:1083:6:226:-9.86301,0,-86.9218 0/0:40:40,0:40:1482:0:0:0,-12.0412,-133.649 0/1:25:21,4:21:805:4:131:-4.58354,0,-65.2482 0/1:14:11,3:11:421:3:118:-6.7883,0,-34.027 dDocent_Contig_7788 33 . A C 763.463 . AB=0.282051;ABP=51.2838;AC=4;AF=0.5;AN=8;AO=33;CIGAR=1X;DP=117;DPB=117;DPRA=0;EPP=74.6689;EPPR=185.414;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.833333;PAO=0;PQA=0;PQR=0;PRO=0;QA=1299;QR=3299;RO=84;RPL=0;RPP=74.6689;RPPR=185.414;RPR=33;RUN=1;SAF=33;SAP=74.6689;SAR=0;SRF=84;SRP=185.414;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:19,2:19:747:2:82:-1.45805,0,-61.2197 0/1:54:43,11:43:1684:11:430:-22.7905,0,-135.534 0/1:26:8,18:8:322:18:705:-55.9495,0,-21.5214 0/1:16:14,2:14:546:2:82:-2.9632,0,-44.6613 dDocent_Contig_7789 14 . T G 4550.44 . AB=0.55597;ABP=10.3026;AC=4;AF=0.5;AN=8;AO=149;CIGAR=1M1X5M;DP=268;DPB=275.429;DPRA=0;EPP=326.56;EPPR=196.271;GTI=0;LEN=1;MEANALT=2.75;MQM=59.9866;MQMR=60;NS=4;NUMALT=3;ODDS=2.77556e-17;PAIRED=0.993289;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5941;QR=3527;RO=89;RPL=0;RPP=326.56;RPPR=196.271;RPR=149;RUN=1;SAF=149;SAP=326.56;SAR=0;SRF=89;SRP=196.271;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:87:27,2,7,51:27:1056:2,7,51:77,280,2022:-158.294,-160.1,-246.308,-143.357,-223.846,-228.061,0,-80.4865,-63.7425,-71.4557 0|1:97:35,0,9,52:35:1389:0,9,52:0,341,2111:-163.581,-174.117,-288.454,-146.168,-260.504,-257.795,0,-114.351,-86.402,-98.6975 0|1:50:18,4,5,23:18:719:4,5,23:143,193,906:-69.1209,-62.8861,-120.906,-58.694,-106.265,-116.414,0,-47.5864,-43.3935,-52.3146 0|1:34:9,0,2,23:9:363:0,2,23:0,81,902:-71.4467,-74.156,-104.081,-67.4758,-97.4014,-96.7994,0,-29.9212,-23.2417,-22.9975 dDocent_Contig_7790 7 . T C 75.265 . AB=0.294118;ABP=9.26925;AC=1;AF=0.125;AN=8;AO=8;CIGAR=2X;DP=68;DPB=68;DPRA=7.22222;EPP=20.3821;EPPR=114.344;GTI=0;LEN=1;MEANALT=1.33333;MQM=34;MQMR=59.7966;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.932203;PAO=0;PQA=0;PQR=0;PRO=0;QA=304;QR=2253;RO=59;RPL=0;RPP=20.3821;RPPR=131.127;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=57;SRP=114.344;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:31:29,1:29:1103:1:39:0,-5.51105,-95.7082 0|1:17:12,5:12:462:5:188:-9.22515,0,-36.8138 0|0:17:15,2:15:572:2:77:0,-0.770476,-47.4675 0|0:3:3,0:3:116:0:0:0,-0.90309,-10.8177 dDocent_Contig_7791 28 . C G 47.9794 . AB=0.12766;ABP=59.6072;AC=2;AF=0.25;AN=8;AO=9;CIGAR=1X;DP=141;DPB=141;DPRA=0.711111;EPP=22.5536;EPPR=289.645;GTI=0;LEN=1;MEANALT=1;MQM=33.6667;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.666667;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=363;QR=4972;RO=132;RPL=0;RPP=22.5536;RPPR=289.645;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=132;SRP=289.645;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:18,3:18:668:3:123:-4.88589,0,-54.1147 0/0:49:46,3:46:1746:3:118:0,-12.7911,-155.418 0/0:45:45,0:45:1682:0:0:0,-13.5463,-151.622 0/1:26:23,3:23:876:3:122:-3.3045,0,-71.3192 dDocent_Contig_7792 21 . C T 576.751 . AB=0.178378;ABP=169.228;AC=3;AF=0.375;AN=8;AO=36;CIGAR=1X;DP=232;DPB=232;DPRA=0;EPP=81.1833;EPPR=428.619;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=0.938776;PAO=0;PQA=0;PQR=0;PRO=0;QA=1416;QR=7868;RO=196;RPL=0;RPP=81.1833;RPPR=428.619;RPR=36;RUN=1;SAF=36;SAP=81.1833;SAR=0;SRF=196;SRP=428.619;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:82:61,21:61:2443:21:817:-49.1567,0,-195.333 0/1:80:73,7:73:2930:7:271:-0.66942,0,-239.706 0/0:47:44,3:44:1775:3:123:0,-2.68362,-148.496 0/1:23:18,5:18:720:5:205:-11.9113,0,-58.1971 dDocent_Contig_7793 25 . T C 161.498 . AB=0.222222;ABP=27.1378;AC=2;AF=0.25;AN=8;AO=8;CIGAR=1X;DP=72;DPB=72;DPRA=1;EPP=20.3821;EPPR=141.985;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=322;QR=2419;RO=64;RPL=0;RPP=20.3821;RPPR=141.985;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=64;SRP=141.985;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:17:17,0:17:657:0:0:0,-5.11751,-59.4651 0/1:26:19,7:19:718:7:281:-17.8358,0,-57.122 0/0:19:19,0:19:730:0:0:0,-5.71957,-66.0259 0/1:10:9,1:9:314:1:41:-1.08427,0,-25.577 dDocent_Contig_7794 7 . T C 8225.02 . AB=0.745318;ABP=142.578;AC=5;AF=0.625;AN=8;AO=268;CIGAR=1X4M;DP=346;DPB=346;DPRA=0;EPP=584.965;EPPR=111.584;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=0.92;PAO=0;PQA=0;PQR=0;PRO=0;QA=10250;QR=1921;RO=50;RPL=0;RPP=584.965;RPPR=111.584;RPR=268;RUN=1;SAF=268;SAP=584.965;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:85:21,3,0,61:21:806:3,0,61:115,0,2335:-185.294,-182.176,-247.433,-191.615,-248.336,-257.775,0,-56.7213,-66.16,-47.7972 0|1:82:8,0,4,67:8:309:0,4,67:0,154,2541:-205.922,-208.33,-233.709,-195.685,-221.064,-219.86,0,-25.3783,-12.7341,-5.20931 0|1:100:15,5,6,71:15:576:5,6,71:194,229,2746:-221.044,-209.62,-255.397,-206.772,-238.115,-252.249,0,-31.3418,-28.4955,-25.9094 1|1:79:6,0,4,69:6:230:0,4,69:0,154,2628:-215.641,-217.447,-236.324,-204.802,-223.68,-222.475,-1.89462,-20.7711,-8.12576,0 dDocent_Contig_7795 92 . G A 130.884 . AB=0.190476;ABP=55.4358;AC=2;AF=0.25;AN=8;AO=12;CIGAR=1X;DP=92;DPB=92;DPRA=2.17241;EPP=29.068;EPPR=176.728;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=387;QR=2682;RO=80;RPL=12;RPP=29.068;RPPR=176.728;RPR=0;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=80;SRP=176.728;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:24,5:24:797:5:143:-4.42138,0,-63.3071 0/1:34:27,7:27:904:7:244:-12.0646,0,-71.4305 0/0:18:18,0:18:615:0:0:0,-5.41854,-55.6723 0/0:11:11,0:11:366:0:0:0,-3.31133,-33.261 dDocent_Contig_7796 107 . N T 513.97 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=17;CIGAR=1X;DP=17;DPB=17;DPRA=0;EPP=39.9253;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=555;QR=0;RO=0;RPL=0;RPP=39.9253;RPPR=0;RPR=17;RUN=1;SAF=0;SAP=39.9253;SAR=17;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:7:0,7:0:0:7:226:-20.6563,-2.10721,0 1/1:7:0,7:0:0:7:228:-20.8396,-2.10721,0 1/1:3:0,3:0:0:3:101:-9.42373,-0.90309,0 dDocent_Contig_7797 14 . T A 194.569 . AB=0.150943;ABP=59.0998;AC=4;AF=0.5;AN=8;AO=12;CIGAR=1X;DP=81;DPB=81;DPRA=0;EPP=29.068;EPPR=152.842;GTI=0;LEN=1;MEANALT=1;MQM=55;MQMR=59.8551;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.985507;PAO=0;PQA=0;PQR=0;PRO=0;QA=445;QR=2676;RO=69;RPL=0;RPP=29.068;RPPR=152.842;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=69;SRP=152.842;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:25:24,1:24:927:1:39:0,-3.63652,-79.8466 0/1:33:30,3:30:1163:3:115:-0.772862,0,-95.0331 0/1:20:15,5:15:586:5:178:-10.3244,0,-47.0518 1/1:3:0,3:0:0:3:113:-10.5239,-0.90309,0 dDocent_Contig_7798 16 . A G 101.493 . AB=0.227273;ABP=17.2236;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=61;DPB=61;DPRA=1.69231;EPP=13.8677;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=201;QR=2207;RO=56;RPL=0;RPP=13.8677;RPPR=124.613;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:11,0:11:439:0:0:0,-3.31133,-39.8646 0/0:23:23,0:23:904:0:0:0,-6.92369,-81.668 0/1:22:17,5:17:665:5:201:-11.8482,0,-53.5567 0/0:5:5,0:5:199:0:0:0,-1.50515,-18.2884 dDocent_Contig_7799 14 . G C 219.59 . AB=0.25;ABP=24.725;AC=2;AF=0.25;AN=8;AO=11;CIGAR=1X;DP=73;DPB=73;DPRA=11.8333;EPP=26.8965;EPPR=137.642;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=448;QR=2490;RO=62;RPL=0;RPP=26.8965;RPPR=137.642;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:2:2,0:2:78:0:0:0,-0.60206,-7.40278 0/1:12:8,4:8:317:4:164:-11.5375,0,-25.2797 0/1:28:22,6:22:888:6:243:-13.8191,0,-71.7968 0/0:31:30,1:30:1207:1:41:0,-5.23736,-104.808 dDocent_Contig_7800 12 . A G 60.6945 . AB=0.166667;ABP=26.1727;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=62;DPB=62;DPRA=1.89474;EPP=11.6962;EPPR=128.956;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=159;QR=2331;RO=58;RPL=0;RPP=11.6962;RPPR=128.956;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:20,4:20:798:4:159:-7.46723,0,-64.9119 0/0:29:29,0:29:1171:0:0:0,-8.72987,-105.667 0/0:6:6,0:6:241:0:0:0,-1.80618,-22.0663 0/0:3:3,0:3:121:0:0:0,-0.90309,-11.2802 dDocent_Contig_7801 29 . T G 232.289 . AB=0.409091;ABP=4.58955;AC=2;AF=0.25;AN=8;AO=9;CIGAR=1X;DP=46;DPB=46;DPRA=0.916667;EPP=22.5536;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=357;QR=1484;RO=37;RPL=0;RPP=22.5536;RPPR=83.3548;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:7:7,0:7:282:0:0:0,-2.10721,-25.7526 0/0:17:17,0:17:685:0:0:0,-5.11751,-61.9795 0/1:14:12,2:12:476:2:76:-2.99984,0,-38.9761 0/1:8:1,7:1:41:7:281:-23.2539,0,-1.68633 dDocent_Contig_7803 47 . G A 65.9334 . AB=0.333333;ABP=5.18177;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=75;DPB=75;DPRA=0.409091;EPP=9.52472;EPPR=157.185;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=118;QR=2837;RO=71;RPL=0;RPP=9.52472;RPPR=157.185;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=71;SRP=157.185;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:20:20,0:20:807:0:0:0,-6.0206,-72.9455 0/0:32:31,0:31:1225:0:0:0,-9.33193,-110.424 0/0:14:14,0:14:562:0:0:0,-4.21442,-50.9204 0/1:9:6,3:6:243:3:118:-8.29231,0,-19.5389 dDocent_Contig_7804 18 . C T 172.748 . AB=0.08;ABP=79.6198;AC=0;AF=0;AN=8;AO=4;CIGAR=1M1X4M1X3M;DP=111;DPB=99;DPRA=25;EPP=11.6962;EPPR=183.243;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=141;QR=3230;RO=83;RPL=0;RPP=11.6962;RPPR=183.243;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=83;SRP=183.243;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:43:36,0,6,1:36:1391:0,6,1:0,219,41:-7.01542,-17.8525,-132.104,0,-114.216,-112.41,-14.462,-128.719,-110.831,-128.418 0|0:50:32,4,7,7:32:1250:4,7,7:141,268,281:-13.5314,-11.6957,-113.253,-1.17071,-92.4645,-101.831,0,-91.3022,-80.7829,-100.669 0|0:16:13,0,2,1:13:511:0,2,1:0,73,40:-2.02768,-5.94107,-47.9865,0,-42.0258,-41.4238,-2.63439,-44.6908,-38.7303,-44.3898 0|0:2:2,0,0,0:2:78:0,0,0:0,0,0:0,-0.60206,-7.40347,-0.60206,-7.40347,-7.40347,-0.60206,-7.40347,-7.40347,-7.40347 dDocent_Contig_7805 11 . C T 2491.41 . AB=0.113636;ABP=60.0608;AC=0;AF=0;AN=8;AO=5;CIGAR=2X;DP=173;DPB=173;DPRA=0;EPP=13.8677;EPPR=183.243;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=203;QR=3287;RO=83;RPL=0;RPP=13.8677;RPPR=183.243;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=83;SRP=183.243;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:44:9,5,30:9:358:5,30:203,1205:-96.5795,-82.546,-110.514,0,-12.7235,-20.4377 0|0:60:45,0,15:45:1777:0,15:0,607:-36.9054,-50.4517,-196.649,0,-146.599,-142.084 0|0:38:21,0,17:21:833:0,17:0,689:-50.9001,-57.2218,-125.782,0,-68.961,-63.8435 0|0:31:8,0,23:8:319:0,23:0,902:-72.1538,-74.562,-100.834,0,-26.669,-19.7453 dDocent_Contig_7806 37 . C T 532.614 . AB=0.375;ABP=10.6105;AC=3;AF=0.375;AN=8;AO=21;CIGAR=1X;DP=68;DPB=68;DPRA=1.55556;EPP=48.6112;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.714286;PAIREDR=0.957447;PAO=0;PQA=0;PQR=0;PRO=0;QA=827;QR=1873;RO=47;RPL=0;RPP=48.6112;RPPR=105.07;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:6,5:6:244:5:200:-15.0671,0,-19.0273 0/0:12:12,0:12:488:0:0:0,-3.61236,-44.2715 0/1:26:16,10:16:624:10:403:-28.8035,0,-48.6626 0/1:19:13,6:13:517:6:224:-14.7888,0,-41.1536 dDocent_Contig_7807 41 . G A 1421.04 . AB=0.5;ABP=3.0103;AC=4;AF=0.5;AN=8;AO=51;CIGAR=1X;DP=102;DPB=102;DPRA=0;EPP=113.755;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=0.784314;PAIREDR=0.764706;PAO=0;PQA=0;PQR=0;PRO=0;QA=1987;QR=2036;RO=51;RPL=0;RPP=113.755;RPPR=113.755;RPR=51;RUN=1;SAF=51;SAP=113.755;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:14,3:14:555:3:120:-6.0698,0,-45.1717 0/1:29:9,20:9:357:20:791:-62.7753,0,-23.7616 0/1:38:16,22:16:638:22:841:-64.5565,0,-46.3153 0/1:18:12,6:12:486:6:235:-16.1005,0,-38.6729 dDocent_Contig_7808 74 . T A 514.627 . AB=0.216;ABP=90.5814;AC=3;AF=0.375;AN=8;AO=28;CIGAR=1X;DP=149;DPB=149;DPRA=0;EPP=63.8115;EPPR=265.758;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1078;QR=4700;RO=121;RPL=28;RPP=63.8115;RPPR=265.758;RPR=0;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=121;SRP=265.758;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:47:31,16:31:1209:16:620:-41.988,0,-94.9455 0/1:57:51,6:51:1993:6:222:-3.17201,0,-162.421 0/1:21:16,5:16:622:5:196:-11.6934,0,-49.9937 0/0:24:23,1:23:876:1:40:0,-3.22904,-75.1491 dDocent_Contig_7809 10 . A G 1913.31 . AB=0.690476;ABP=29.4816;AC=5;AF=0.625;AN=8;AO=62;CIGAR=1X;DP=88;DPB=88;DPRA=0;EPP=137.642;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.903226;PAIREDR=0.961538;PAO=0;PQA=0;PQR=0;PRO=0;QA=2452;QR=1046;RO=26;RPL=0;RPP=137.642;RPPR=59.4686;RPR=62;RUN=1;SAF=62;SAP=137.642;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:37:11,26:11:446:26:1024:-81.3088,0,-29.3575 0/1:25:6,19:6:244:19:755:-60.7454,0,-14.8129 0/1:22:9,13:9:356:13:513:-39.8907,0,-25.7781 1/1:4:0,4:0:0:4:160:-14.7838,-1.20412,0 dDocent_Contig_7810 14 . T A 118.295 . AB=0.272727;ABP=12.8806;AC=1;AF=0.125;AN=8;AO=6;CIGAR=2X;DP=52;DPB=52;DPRA=2.2;EPP=16.0391;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.666667;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=220;QR=1826;RO=46;RPL=0;RPP=16.0391;RPPR=102.898;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:20:20,0:20:802:0:0:0,-6.0206,-72.4988 0|1:22:16,6:16:632:6:220:-13.5284,0,-50.5862 0|0:7:7,0:7:271:0:0:0,-2.10721,-24.7514 0|0:3:3,0:3:121:0:0:0,-0.90309,-11.2802 dDocent_Contig_7811 92 . C T 321.442 . AB=0.256098;ABP=45.3805;AC=4;AF=0.5;AN=8;AO=21;CIGAR=1X3M1X;DP=82;DPB=82;DPRA=0;EPP=48.6112;EPPR=131.127;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.047619;PAIREDR=0.813559;PAO=0;PQA=0;PQR=0;PRO=0;QA=700;QR=2012;RO=59;RPL=21;RPP=48.6112;RPPR=131.127;RPR=0;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=59;SRP=131.127;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:23:17,5:17:584:5:172:-8.86357,0,-45.9316 0|1:26:22,4:22:752:4:128:-4.01026,0,-60.1719 0|1:19:9,9:9:304:9:303:-21.8307,0,-21.9213 0|1:14:11,3:11:372:3:97:-4.83636,0,-29.5923 dDocent_Contig_7812 26 . G A 1460.8 . AB=0.126316;ABP=233.461;AC=2;AF=0.25;AN=8;AO=24;CIGAR=1M2X1M1X1M1X1M2X5M1X;DP=190;DPB=190;DPRA=0;EPP=55.1256;EPPR=176.728;GTI=0;LEN=1;MEANALT=5.25;MQM=55;MQMR=60;NS=4;NUMALT=5;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=912;QR=3087;RO=80;RPL=0;RPP=55.1256;RPPR=176.728;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=80;SRP=176.728;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:63:33,0,7,14,7,0:33:1286:0,7,14,7,0:0,279,527,264,0:-33.1661,-43.1001,-148.8,-20.1755,-125.878,-123.771,0,-105.697,-82.7751,-101.482,-21.468,-127.167,-104.246,-84.0647,-125.06,-43.1001,-148.8,-125.878,-105.697,-127.167,-148.8 0|1:49:26,1,8,3,5,2:26:982:1,8,3,5,2:30,317,114,188,82:-18.2164,-23.9197,-104.094,0,-78.3602,-78.0777,-16.7089,-95.0616,-71.1519,-96.2844,-10.6423,-88.9951,-65.0852,-81.7873,-89.6158,-19.2716,-97.6255,-73.7158,-90.4178,-84.3511,-99.1494 0|0:47:12,0,5,5,7,18:12:473:0,5,5,7,18:0,198,193,268,716:-55.3437,-58.9561,-97.8724,-42.6972,-81.6137,-80.1086,-43.1374,-82.0534,-65.7948,-80.5483,-36.9674,-75.883,-59.6245,-60.0645,-73.7758,0,-38.9188,-22.6593,-23.0999,-16.9299,-33.5003 0|0:31:9,2,0,2,3,15:9:346:2,0,2,3,15:60,0,78,107,600:-46.7513,-45.2152,-73.0147,-49.4606,-73.6167,-77.8655,-43.0612,-67.2182,-71.4664,-70.8644,-40.7429,-64.899,-69.1467,-62.7478,-68.2436,0,-24.1854,-28.4282,-22.0263,-19.7088,-23.9128 dDocent_Contig_7815 29 . G A 283.224 . AB=0.186813;ABP=80.539;AC=2;AF=0.25;AN=8;AO=20;CIGAR=1X;DP=164;DPB=164;DPRA=1.18519;EPP=46.4397;EPPR=309.188;GTI=0;LEN=1;MEANALT=1.33333;MQM=47;MQMR=59.6809;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.460993;PAO=0;PQA=0;PQR=0;PRO=0;QA=768;QR=5398;RO=141;RPL=0;RPP=46.4397;RPPR=309.188;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=141;SRP=309.188;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:74:58,13:58:2195:13:506:-22.8548,0,-175.994 0/0:36:36,0:36:1398:0:0:0,-10.8371,-126.085 0/0:37:34,3:34:1303:3:109:0,-1.05464,-107.373 0/1:17:13,4:13:502:4:153:-8.86541,0,-40.4069 dDocent_Contig_7816 98 . N A 396.604 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=13;CIGAR=1X;DP=13;DPB=13;DPRA=0;EPP=31.2394;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=430;QR=0;RO=0;RPL=13;RPP=31.2394;RPPR=0;RPR=0;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:12:0,12:0:0:12:396:-35.9592,-3.61236,0 1/1:1:0,1:0:0:1:34:-3.39891,-0.30103,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_7817 117 . A G 44.8512 . AB=0.25;ABP=9.52472;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=45;DPB=45;DPRA=1.09091;EPP=9.52472;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=105;QR=1467;RO=42;RPL=0;RPP=9.52472;RPPR=94.2121;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=94.2121;SRR=42;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:17:17,0:17:595:0:0:0,-5.11751,-53.8789 0/0:2:2,0:2:70:0:0:0,-0.60206,-6.6474 0/1:12:9,3:9:314:3:105:-6.1838,0,-24.9855 0/0:14:14,0:14:488:0:0:0,-4.21442,-44.2517 dDocent_Contig_7818 35 . G T 370.408 . AB=0.176923;ABP=120.871;AC=4;AF=0.5;AN=8;AO=23;CIGAR=1X;DP=130;DPB=130;DPRA=0;EPP=52.9542;EPPR=235.358;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=912;QR=4079;RO=107;RPL=0;RPP=52.9542;RPPR=235.358;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=107;SRP=235.358;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:40:31,9:31:1173:9:349:-19.7249,0,-93.8091 0/1:56:47,9:47:1806:9:366:-16.4475,0,-145.917 0/1:23:20,3:20:759:3:118:-4.07882,0,-61.7045 0/1:11:9,2:9:341:2:79:-4.18591,0,-27.7326 dDocent_Contig_7820 18 . T C 98.3857 . AB=0.333333;ABP=5.9056;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=132;DPB=132;DPRA=1;EPP=18.2106;EPPR=272.273;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.66129;PAO=0;PQA=0;PQR=0;PRO=0;QA=285;QR=4941;RO=124;RPL=0;RPP=18.2106;RPPR=272.273;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=124;SRP=272.273;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:33:33,0:33:1303:0:0:0,-9.93399,-117.532 0/0:54:50,3:50:1991:3:121:0,-4.85011,-168.165 0/0:33:33,0:33:1339:0:0:0,-9.93399,-120.766 0/1:12:8,4:8:308:4:164:-11.5375,0,-24.4632 dDocent_Contig_7821 80 . T A 951.39 . AB=0.0571429;ABP=62.6327;AC=0;AF=0;AN=8;AO=2;CIGAR=6M1X13M;DP=83;DPB=82.4;DPRA=0;EPP=7.35324;EPPR=83.3548;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=74;QR=1312;RO=37;RPL=2;RPP=7.35324;RPPR=83.3548;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:27:12,3,11,0,0:12:427:3,11,0,0:114,419,0,0:-30.8179,-25.0757,-58.9745,0,-25.4862,-31.533,-34.4302,-59.8776,-34.8443,-69.2296,-34.4302,-59.8776,-34.8443,-69.2296,-69.2296 0|0:35:16,17,0,0,2:16:565:17,0,0,2:626,0,0,74:-46.3654,0,-40.8794,-51.1818,-45.9969,-97.1868,-51.1818,-45.9969,-97.1868,-97.1868,-45.1276,-39.941,-91.1322,-91.1322,-90.5302 0|0:11:5,2,0,3,0:5:177:2,0,3,0:75,0,111,0:-7.57093,-2.93279,-16.7371,-9.07608,-17.3392,-23.4846,0,-8.25479,-14.4018,-13.4987,-9.07608,-17.3392,-23.4846,-14.4018,-23.4846 0|0:10:4,6,0,0,0:4:143:6,0,0,0:227,0,0,0:-17.7826,0,-10.2111,-18.9867,-12.0173,-30.6384,-18.9867,-12.0173,-30.6384,-30.6384,-18.9867,-12.0173,-30.6384,-30.6384,-30.6384 dDocent_Contig_7823 80 . T C 229.815 . AB=0.307692;ABP=15.538;AC=2;AF=0.25;AN=8;AO=13;CIGAR=1X;DP=81;DPB=81;DPRA=1.74359;EPP=31.2394;EPPR=150.67;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=451;QR=2326;RO=68;RPL=13;RPP=31.2394;RPPR=150.67;RPR=0;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=68;SRP=150.67;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:20,8:20:695:8:277:-16.8381,0,-54.4441 0/0:13:13,0:13:449:0:0:0,-3.91339,-40.7406 0/0:29:28,1:28:945:1:35:0,-5.23124,-81.8605 0/1:11:7,4:7:237:4:139:-9.54136,0,-18.3501 dDocent_Contig_7826 42 . T G 841.603 . AB=0.383721;ABP=13.1102;AC=4;AF=0.5;AN=8;AO=33;CIGAR=1X;DP=86;DPB=86;DPRA=0;EPP=74.6689;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1289;QR=2118;RO=53;RPL=0;RPP=74.6689;RPPR=118.098;RPR=33;RUN=1;SAF=33;SAP=74.6689;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:32:23,9:23:918:9:358:-22.9497,0,-73.2907 0/1:21:9,12:9:359:12:461:-35.5064,0,-26.3504 0/1:24:18,6:18:719:6:242:-14.9326,0,-57.8064 0/1:9:3,6:3:122:6:228:-18.1695,0,-8.66322 dDocent_Contig_7828 22 . T C 65.1549 . AB=0.111111;ABP=26.6552;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1M1I2M1X1M;DP=79;DPB=80.6;DPRA=0.75;EPP=7.35324;EPPR=157.185;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.633803;PAO=0;PQA=0;PQR=0;PRO=0;QA=80;QR=2780;RO=71;RPL=0;RPP=7.35324;RPPR=157.185;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=71;SRP=157.185;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:24:24,0,0:24:947:0,0:0,0:0,-7.22472,-85.5359,-7.22472,-85.5359,-85.5359 0|1:18:16,2,0:16:640:2,0:80,0:-2.17304,0,-52.517,-6.98951,-53.119,-59.709 0|0:23:19,0,4:19:738:0,4:0,149:-6.84842,-12.568,-73.2146,0,-61.0216,-59.8174 0|0:14:12,0,2:12:455:0,2:0,74:-2.81044,-6.4228,-43.7268,0,-37.6751,-37.073 dDocent_Contig_7829 11 . T C 4075.18 . AB=0.378238;ABP=52.7179;AC=4;AF=0.5;AN=8;AO=146;CIGAR=1X;DP=386;DPB=386;DPRA=0;EPP=320.045;EPPR=524.164;GTI=0;LEN=1;MEANALT=1;MQM=59.7945;MQMR=60;NS=4;NUMALT=1;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5893;QR=9664;RO=240;RPL=0;RPP=320.045;RPPR=524.164;RPR=146;RUN=1;SAF=146;SAP=320.045;SAR=0;SRF=240;SRP=524.164;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:75:50,25:50:2020:25:1018:-69.103,0,-159.406 0/1:182:110,72:110:4434:72:2902:-206.477,0,-344.185 0/1:97:61,36:61:2446:36:1441:-100.742,0,-191.081 0/1:32:19,13:19:764:13:532:-38.5932,0,-59.4437 dDocent_Contig_7830 16 . G A 1154.24 . AB=0.352;ABP=26.7923;AC=4;AF=0.5;AN=8;AO=44;CIGAR=1X;DP=125;DPB=125;DPRA=0;EPP=98.5551;EPPR=138.151;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=57.037;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.938272;PAO=0;PQA=0;PQR=0;PRO=0;QA=1748;QR=3214;RO=81;RPL=0;RPP=98.5551;RPPR=178.9;RPR=44;RUN=1;SAF=44;SAP=98.5551;SAR=0;SRF=76;SRP=138.151;SRR=5;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:56:44,12:44:1743:12:467:-25.5194,0,-130.215 0/1:39:26,13:26:1034:13:513:-34.7755,0,-81.6129 0/1:20:10,10:10:404:10:401:-30.4289,0,-30.6996 0/1:10:1,9:1:33:9:367:-30.385,0,-0.288835 dDocent_Contig_7831 42 . T G 52.5038 . AB=0.2;ABP=14.7363;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=126;DPB=126;DPRA=1.33333;EPP=16.0391;EPPR=263.587;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.991667;PAO=0;PQA=0;PQR=0;PRO=0;QA=243;QR=4833;RO=120;RPL=0;RPP=16.0391;RPPR=263.587;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=120;SRP=263.587;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:47:47,0:47:1902:0:0:0,-14.1484,-171.376 0/0:57:54,3:54:2166:3:120:0,-5.9714,-183.92 0/1:15:12,3:12:482:3:123:-6.94934,0,-39.2159 0/0:7:7,0:7:283:0:0:0,-2.10721,-25.8434 dDocent_Contig_7832 11 . G A 1947.39 . AB=0.433121;ABP=9.10979;AC=4;AF=0.5;AN=8;AO=68;CIGAR=1X;DP=157;DPB=157;DPRA=0;EPP=150.67;EPPR=196.271;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2756;QR=3564;RO=89;RPL=0;RPP=150.67;RPPR=196.271;RPR=68;RUN=1;SAF=68;SAP=150.67;SAR=0;SRF=89;SRP=196.271;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:84:63,21:63:2518:21:859:-52.3313,0,-201.469 0/1:28:8,20:8:325:20:805:-64.3385,0,-21.1908 0/1:18:2,16:2:82:16:646:-53.0548,0,-2.36114 0/1:27:16,11:16:639:11:446:-32.3676,0,-49.7132 dDocent_Contig_7833 33 . A C 236.784 . AB=0.28;ABP=13.5202;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X1M1X;DP=93;DPB=93;DPRA=1.39474;EPP=20.3821;EPPR=172.385;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=323;QR=3117;RO=78;RPL=0;RPP=20.3821;RPPR=172.385;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=78;SRP=172.385;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:25:18,7,0,0:18:716:7,0,0:282,0,0:-18.2268,0,-57.2394,-23.6454,-59.3467,-82.5911,-23.6454,-59.3467,-82.5911,-82.5911 0|0:28:27,1,0,0:27:1077:1,0,0:41,0,0:0,-4.33427,-93.1264,-8.12781,-93.4274,-96.8119,-8.12781,-93.4274,-96.8119,-96.8119 0|0:19:18,0,0,0:18:719:0,0,0:0,0,0:0,-5.41854,-64.9297,-5.41854,-64.9297,-64.9297,-5.41854,-64.9297,-64.9297,-64.9297 0|0:21:15,0,4,2:15:605:0,4,2:0,162,79:-8.84949,-13.3649,-63.2366,0,-49.8777,-48.6736,-6.86765,-56.7368,-43.3781,-56.1347 dDocent_Contig_7836 14 . G A 993.204 . AB=0.05;ABP=460.322;AC=0;AF=0;AN=8;AO=13;CIGAR=1X1M3X;DP=321;DPB=321;DPRA=0;EPP=31.2394;EPPR=513.306;GTI=0;LEN=1;MEANALT=3;MQM=37.8462;MQMR=60;NS=4;NUMALT=2;ODDS=2.77556e-17;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=510;QR=9030;RO=235;RPL=0;RPP=31.2394;RPPR=513.306;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=235;SRP=513.306;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:123:87,8,24:87:3346:8,24:314,963:-39.2789,-41.6093,-313.915,0,-250.848,-267.475 0|0:90:73,2,15:73:2810:2,15:80,587:-17.373,-33.8635,-264.015,0,-225.267,-226.234 0|0:47:33,3,9:33:1273:3,9:116,359:-16.0395,-18.4794,-122.13,0,-97.0747,-101.864 0|0:61:42,0,19:42:1601:0,19:0,762:-34.0268,-46.6701,-178.048,0,-131.707,-125.987 dDocent_Contig_7837 68 . C A 185.462 . AB=0.169014;ABP=70.5706;AC=2;AF=0.25;AN=8;AO=12;CIGAR=1X;DP=137;DPB=137;DPRA=1.07576;EPP=29.068;EPPR=274.444;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=473;QR=4847;RO=125;RPL=12;RPP=29.068;RPPR=274.444;RPR=0;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=125;SRP=274.444;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:56:56,0:56:2174:0:0:0,-16.8577,-195.841 0/1:48:41,7:41:1573:7:271:-10.3063,0,-127.348 0/1:23:18,5:18:709:5:202:-11.6378,0,-57.21 0/0:10:10,0:10:391:0:0:0,-3.0103,-35.5415 dDocent_Contig_7838 56 . A T 179.505 . AB=0.204082;ABP=40.2799;AC=1;AF=0.125;AN=8;AO=10;CIGAR=1X;DP=103;DPB=103;DPRA=2.72222;EPP=24.725;EPPR=204.957;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=375;QR=3519;RO=93;RPL=10;RPP=24.725;RPPR=204.957;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=93;SRP=204.957;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:49:39,10:39:1453:10:375:-19.3483,0,-116.293 0/0:40:40,0:40:1523:0:0:0,-12.0412,-137.343 0/0:11:11,0:11:429:0:0:0,-3.31133,-38.9656 0/0:3:3,0:3:114:0:0:0,-0.90309,-10.632 dDocent_Contig_7839 43 . G C 2621.88 . AB=0.541176;ABP=5.51388;AC=4;AF=0.5;AN=8;AO=92;CIGAR=1X2M1X;DP=170;DPB=170;DPRA=0;EPP=202.786;EPPR=161.528;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3538;QR=2798;RO=73;RPL=0;RPP=202.786;RPPR=161.528;RPR=92;RUN=1;SAF=92;SAP=202.786;SAR=0;SRF=73;SRP=161.528;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:58:32,26,0:32:1220:26,0:1011,0:-73.8285,0,-92.627,-83.4615,-100.454,-183.53 0|1:78:27,46,4:27:1041:46,4:1786,156:-138.606,0,-71.6243,-133.912,-72.6492,-218.182 0|1:24:8,16,0:8:308:16,0:585,0:-45.7448,0,-20.8562,-48.153,-25.6727,-73.4475 0|1:10:6,4,0:6:229:4,0:156,0:-11.4063,0,-17.9634,-13.2125,-19.1675,-31.9937 dDocent_Contig_7840 31 . A T 403.945 . AB=0.21;ABP=76.0586;AC=3;AF=0.375;AN=8;AO=21;CIGAR=1X;DP=104;DPB=104;DPRA=8.33333;EPP=48.6112;EPPR=183.243;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.987952;PAO=0;PQA=0;PQR=0;PRO=0;QA=831;QR=3325;RO=83;RPL=0;RPP=48.6112;RPPR=183.243;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=83;SRP=183.243;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:38:31,7:31:1246:7:278:-13.9507,0,-100.965 0/1:38:30,8:30:1218:8:320:-17.7277,0,-98.4506 0/1:24:18,6:18:706:6:233:-14.114,0,-56.6398 0/0:4:4,0:4:155:0:0:0,-1.20412,-14.3253 dDocent_Contig_7841 32 . T A 395.403 . AB=0.201835;ABP=87.1798;AC=4;AF=0.5;AN=8;AO=22;CIGAR=1X;DP=109;DPB=109;DPRA=0;EPP=34.9902;EPPR=191.928;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=0;PAIREDR=0.632184;PAO=0;PQA=0;PQR=0;PRO=0;QA=859;QR=3217;RO=87;RPL=0;RPP=50.7827;RPPR=191.928;RPR=22;RUN=1;SAF=20;SAP=34.9902;SAR=2;SRF=87;SRP=191.928;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:40:30,10:30:1125:10:382:-22.6908,0,-89.5056 0/1:34:26,8:26:960:8:315:-18.4783,0,-76.4667 0/1:25:22,3:22:785:3:121:-3.75424,0,-63.4395 0/1:10:9,1:9:347:1:41:-1.08427,0,-28.5792 dDocent_Contig_7842 1 . N G 113.73 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:122:-11.3725,-0.90309,0 dDocent_Contig_7843 27 . C T 215.775 . AB=0.0833333;ABP=129.68;AC=0;AF=0;AN=8;AO=7;CIGAR=2X;DP=127;DPB=127;DPRA=0.651163;EPP=18.2106;EPPR=220.158;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=262;QR=3925;RO=100;RPL=0;RPP=18.2106;RPPR=220.158;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=100;SRP=220.158;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:38:29,4,5:29:1133:4,5:149,202:-7.9409,-4.48739,-96.409,0,-80.9578,-91.6477 0|0:43:38,0,3:38:1504:0,3:0,119:0,-11.4391,-135.213,-1.63938,-125.417,-124.514 0|0:24:16,2,6:16:641:2,6:74,231:-14.1578,-12.9243,-65.1416,0,-46.7848,-51.0289 0|0:22:17,1,3:17:647:1,3:39,121:-4.8766,-6.78822,-59.543,0,-49.8663,-52.1697 dDocent_Contig_7844 91 . A G 55.2121 . AB=0.15625;ABP=35.8538;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=56;DPB=56;DPRA=4;EPP=13.8677;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=180;QR=1813;RO=51;RPL=5;RPP=13.8677;RPPR=113.755;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:32:27,5:27:964:5:180:-6.91911,0,-77.4444 0/0:11:11,0:11:389:0:0:0,-3.31133,-35.3481 0/0:8:8,0:8:282:0:0:0,-2.40824,-25.7213 0/0:5:5,0:5:178:0:0:0,-1.50515,-16.3686 dDocent_Contig_7845 30 . G C 336.435 . AB=0.241935;ABP=38.8746;AC=1;AF=0.125;AN=8;AO=16;CIGAR=1X;DP=134;DPB=134;DPRA=4.15385;EPP=37.7539;EPPR=259.244;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=634;QR=4704;RO=118;RPL=0;RPP=37.7539;RPPR=259.244;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=118;SRP=259.244;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:62:47,15:47:1883:15:593:-35.0415,0,-151.013 0/0:46:45,1:45:1790:1:41:0,-9.75281,-157.225 0/0:17:17,0:17:691:0:0:0,-5.11751,-62.5188 0/0:9:9,0:9:340:0:0:0,-2.70927,-30.949 dDocent_Contig_7846 31 . T A 35.5274 . AB=0.142857;ABP=34.0313;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=63;DPB=63;DPRA=2.4;EPP=11.6962;EPPR=131.127;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=148;QR=2167;RO=59;RPL=0;RPP=11.6962;RPPR=131.127;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=59;SRP=131.127;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:13:13,0:13:475:0:0:0,-3.91339,-43.0814 0/1:28:24,4:24:882:4:148:-5.25159,0,-71.2631 0/0:13:13,0:13:469:0:0:0,-3.91339,-42.5393 0/0:9:9,0:9:341:0:0:0,-2.70927,-31.0401 dDocent_Contig_7847 11 . A T 602.4 . AB=0.16;ABP=203.828;AC=4;AF=0.5;AN=8;AO=32;CIGAR=1X3M;DP=200;DPB=200.5;DPRA=0;EPP=72.4974;EPPR=330.903;GTI=0;LEN=1;MEANALT=3.25;MQM=56.0625;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.21875;PAIREDR=0.933775;PAO=0;PQA=0;PQR=0;PRO=0;QA=1296;QR=6000;RO=151;RPL=0;RPP=72.4974;RPPR=330.903;RPR=32;RUN=1;SAF=32;SAP=72.4974;SAR=0;SRF=151;SRP=330.903;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:75:61,1,8:61:2427:1,8:40,321:-7.94617,-23.0141,-222.536,0,-196.524,-197.411 0|1:81:56,2,21:56:2223:2,21:78,853:-53.3105,-63.7577,-246.149,0,-176.592,-176.681 0|1:30:25,3,1:25:989:3,1:120,41:-2.35464,0,-80.4735,-6.52791,-78.0245,-87.6091 0|1:14:9,2,2:9:361:2,2:79,81:-3.91223,-0.124296,-29.2641,0,-23.2453,-29.1431 dDocent_Contig_7848 10 . T A 4319.8 . AB=0.642857;ABP=45.1989;AC=4;AF=0.5;AN=8;AO=153;CIGAR=1X;DP=238;DPB=238;DPRA=0;EPP=335.246;EPPR=187.585;GTI=0;LEN=1;MEANALT=1;MQM=40.8431;MQMR=59.8353;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.976471;PAO=0;PQA=0;PQR=0;PRO=0;QA=6169;QR=3406;RO=85;RPL=0;RPP=335.246;RPPR=187.585;RPR=153;RUN=1;SAF=153;SAP=335.246;SAR=0;SRF=85;SRP=187.585;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:108:36,72:36:1453:72:2910:-202.491,0,-98.455 0/1:44:11,33:11:448:33:1345:-101.021,0,-27.4307 0/1:61:28,33:28:1113:33:1317:-92.9943,0,-82.082 0/1:25:10,15:10:392:15:597:-42.8723,0,-28.1037 dDocent_Contig_7849 82 . A T 813.46 . AB=0.5;ABP=3.0103;AC=4;AF=0.5;AN=8;AO=30;CIGAR=1M2I2M1X;DP=75;DPB=90;DPRA=1.13725;EPP=68.1545;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1115;QR=1699;RO=44;RPL=30;RPP=68.1545;RPPR=98.5551;RPR=0;RUN=1;SAF=30;SAP=68.1545;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:17:17,0:17:664:0:0:0,-5.11751,-60.0952 0|1:29:13,15:13:494:15:563:-42.4733,0,-36.2597 1|1:2:0,2:0:0:2:77:-7.30914,-0.60206,0 0|1:27:14,13:14:541:13:475:-34.9612,0,-40.9069 dDocent_Contig_7851 48 . T C 1494.01 . AB=0.53;ABP=3.79203;AC=4;AF=0.5;AN=8;AO=53;CIGAR=1X;DP=100;DPB=100;DPRA=0;EPP=101.382;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2061;QR=1544;RO=47;RPL=0;RPP=118.098;RPPR=105.07;RPR=53;RUN=1;SAF=51;SAP=101.382;SAR=2;SRF=0;SRP=105.07;SRR=47;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:72:34,38:34:1126:38:1462:-110.147,0,-79.9643 0/1:2:1,1:1:33:1:41:-3.49251,0,-2.69707 0/1:12:5,7:5:155:7:275:-21.5051,0,-10.6446 0/1:14:7,7:7:230:7:283:-21.6292,0,-16.8079 dDocent_Contig_7852 51 . G A 187.981 . AB=0.261905;ABP=23.691;AC=4;AF=0.5;AN=8;AO=11;CIGAR=1X;DP=42;DPB=42;DPRA=0;EPP=26.8965;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.967742;PAO=0;PQA=0;PQR=0;PRO=0;QA=415;QR=1230;RO=31;RPL=11;RPP=26.8965;RPPR=70.3259;RPR=0;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:8,4:8:304:4:137:-9.04505,0,-24.101 0/1:11:8,3:8:325:3:123:-8.15346,0,-26.3077 0/1:15:13,2:13:523:2:81:-3.17028,0,-42.8989 0/1:4:2,2:2:78:2:74:-5.8199,0,-6.19866 dDocent_Contig_7853 16 . T G 212.609 . AB=0.180556;ABP=66.8275;AC=2;AF=0.25;AN=8;AO=13;CIGAR=1X;DP=105;DPB=105;DPRA=2.18182;EPP=31.2394;EPPR=202.786;GTI=0;LEN=1;MEANALT=1;MQM=46;MQMR=55.9022;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.880435;PAO=0;PQA=0;PQR=0;PRO=0;QA=519;QR=3641;RO=92;RPL=0;RPP=31.2394;RPPR=202.786;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=92;SRP=202.786;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:27:27,0:27:1073:0:0:0,-8.12781,-95.9129 0/1:38:34,4:34:1334:4:152:-2.34828,0,-107.202 0/1:34:25,9:25:995:9:367:-22.2644,0,-79.5424 0/0:6:6,0:6:239:0:0:0,-1.80618,-21.8848 dDocent_Contig_7854 73 . A G 45.3041 . AB=0.666667;ABP=3.73412;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X;DP=26;DPB=26;DPRA=0.391304;EPP=3.0103;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=75;QR=909;RO=24;RPL=2;RPP=7.35324;RPPR=55.1256;RPR=0;RUN=1;SAF=1;SAP=3.0103;SAR=1;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:8:8,0:8:298:0:0:0,-2.40824,-27.1716 0/1:3:1,2:1:38:2:75:-6.21571,0,-2.89418 0/0:8:8,0:8:316:0:0:0,-2.40824,-28.8062 0/0:7:7,0:7:257:0:0:0,-2.10721,-23.4808 dDocent_Contig_7855 15 . A C 96.6519 . AB=0.208333;ABP=20.744;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=77;DPB=77;DPRA=1.35849;EPP=13.8677;EPPR=159.356;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=0.958333;PAO=0;PQA=0;PQR=0;PRO=0;QA=199;QR=2896;RO=72;RPL=0;RPP=13.8677;RPPR=159.356;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=72;SRP=159.356;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:19,5:19:763:5:199:-11.0631,0,-61.7631 0/0:17:17,0:17:685:0:0:0,-5.11751,-61.9789 0/0:24:24,0:24:976:0:0:0,-7.22472,-88.1368 0/0:12:12,0:12:472:0:0:0,-3.61236,-42.8264 dDocent_Contig_7856 88 . T C 1593.42 . AB=0.488722;ABP=3.15724;AC=4;AF=0.5;AN=8;AO=65;CIGAR=1X;DP=133;DPB=133;DPRA=0;EPP=144.156;EPPR=150.67;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.938462;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2283;QR=2400;RO=68;RPL=65;RPP=144.156;RPPR=150.67;RPR=0;RUN=1;SAF=65;SAP=144.156;SAR=0;SRF=68;SRP=150.67;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:16,15:16:545:15:543:-39.8744,0,-40.0393 0/1:37:21,16:21:751:16:561:-39.6771,0,-56.7783 0/1:43:24,19:24:853:19:635:-44.5149,0,-64.1465 0/1:22:7,15:7:251:15:544:-42.6741,0,-16.3152 dDocent_Contig_7857 15 . T C 10160.4 . AB=0.696386;ABP=142.032;AC=6;AF=0.75;AN=8;AO=289;CIGAR=1X2M;DP=415;DPB=415;DPRA=0;EPP=587.888;EPPR=109.412;GTI=0;LEN=1;MEANALT=2.25;MQM=59.3426;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.979239;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=11486;QR=1940;RO=49;RPL=0;RPP=630.566;RPPR=109.412;RPR=289;RUN=1;SAF=284;SAP=587.888;SAR=5;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:140:18,23,97:18:697:23,97:915,3866:-330.739,-260.827,-311.145,-18.0963,0,-46.1357 1|1:136:11,34,91:11:436:34,91:1357,3632:-371.659,-263.214,-288.865,-75.8725,0,-84.364 0|1:82:13,11,58:13:524:11,58:440,2325:-187.632,-155.301,-195.182,0,-6.95095,-25.7336 0|1:57:7,7,43:7:283:7,43:280,1663:-133.352,-112.393,-133.621,0,-0.272527,-10.3904 dDocent_Contig_7859 36 . G T 350.434 . AB=0.136905;ABP=195.392;AC=3;AF=0.375;AN=8;AO=23;CIGAR=7M1X;DP=193;DPB=193.875;DPRA=0;EPP=52.9542;EPPR=343.931;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.980892;PAO=0;PQA=0;PQR=0;PRO=0;QA=930;QR=6142;RO=157;RPL=0;RPP=52.9542;RPPR=343.931;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=157;SRP=343.931;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:51:43,0,7:43:1676:0,7:0,284:-10.6656,-23.6099,-161.365,0,-137.941,-135.834 0|1:49:39,3,5:39:1522:3,5:123,203:-5.00323,-6.58904,-130.782,0,-114.942,-123.59 0|1:68:54,0,11:54:2110:0,11:0,443:-20.2505,-36.5062,-209.956,0,-173.442,-170.131 0|0:25:21,4,0:21:834:4,0:152,0:-6.5219,0,-67.8534,-12.8435,-69.0575,-81.5186 dDocent_Contig_7861 209 . N G 69.3116 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=73;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:73:-6.93007,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_7863 122 . A G 37.4222 . AB=0.146341;ABP=47.552;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=93;DPB=93;DPRA=2.25;EPP=20.3821;EPPR=187.585;GTI=0;LEN=1;MEANALT=1;MQM=48.5;MQMR=59.6235;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.470588;PAO=0;PQA=0;PQR=0;PRO=0;QA=271;QR=2965;RO=85;RPL=0;RPP=20.3821;RPPR=187.585;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=187.585;SRR=85;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:26:25,1:25:871:1:33:0,-4.53536,-75.4147 0/1:41:35,6:35:1218:6:203:-5.4409,0,-97.5682 0/0:14:13,1:13:460:1:35:0,-0.722997,-38.244 0/0:12:12,0:12:416:0:0:0,-3.61236,-37.7712 dDocent_Contig_7864 8 . A C 211.275 . AB=0.318182;ABP=15.6443;AC=2;AF=0.25;AN=8;AO=14;CIGAR=1X3M;DP=97;DPB=96.75;DPRA=3.52;EPP=33.4109;EPPR=113.755;GTI=0;LEN=1;MEANALT=4;MQM=24;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=336;QR=1963;RO=51;RPL=0;RPP=33.4109;RPPR=113.755;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:23:19,0,4,0:19:742:0,4,0:0,48,0:0,-5.71957,-66.966,-3.54599,-64.9357,-63.7316,-5.71957,-66.966,-64.9357,-66.966 0|1:44:12,14,3,14:12:460:14,3,14:551,42,336:-18.6516,-4.3804,-37.9968,-20.1792,-40.1363,-57.0859,0,-20.0179,-35.7648,-33.6271 0|1:28:18,9,0,0:18:683:9,0,0:354,0,0:-5.87302,0,-53.4711,-11.2916,-56.1804,-67.4239,-11.2916,-56.1804,-67.4239,-67.4239 0|0:2:2,0,0,0:2:78:0,0,0:0,0,0:0,-0.60206,-7.40347,-0.60206,-7.40347,-7.40347,-0.60206,-7.40347,-7.40347,-7.40347 dDocent_Contig_7865 8 . A C 466.247 . AB=0.278481;ABP=36.6819;AC=4;AF=0.5;AN=8;AO=22;CIGAR=1X;DP=79;DPB=79;DPRA=0;EPP=50.7827;EPPR=126.784;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.954545;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=848;QR=2170;RO=57;RPL=0;RPP=50.7827;RPPR=126.784;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:10,12:10:366:12:460:-35.127,0,-26.6637 0/1:20:16,4:16:620:4:154:-8.21286,0,-50.1195 0/1:31:27,4:27:1032:4:156:-5.08536,0,-83.8567 0/1:6:4,2:4:152:2:78:-5.59729,0,-12.243 dDocent_Contig_7866 80 . C T 381.399 . AB=0.333333;ABP=17.4868;AC=3;AF=0.375;AN=8;AO=20;CIGAR=1X;DP=64;DPB=64;DPRA=5;EPP=46.4397;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=667;QR=1505;RO=44;RPL=20;RPP=46.4397;RPPR=98.5551;RPR=0;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:14,2:14:485:2:66:-1.45188,0,-39.1638 0/1:29:14,15:14:477:15:496:-36.2273,0,-34.5252 0/1:15:12,3:12:404:3:105:-5.28071,0,-32.1689 0/0:4:4,0:4:139:0:0:0,-1.20412,-12.8527 dDocent_Contig_7867 71 . G A 85.5668 . AB=0.25;ABP=13.8677;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X;DP=189;DPB=189;DPRA=0.454167;EPP=22.5536;EPPR=393.875;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=325;QR=6511;RO=180;RPL=9;RPP=22.5536;RPPR=393.875;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=180;SRP=393.875;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:80:80,0:80:2883:0:0:0,-24.0824,-259.693 0/0:53:51,2:51:1842:2:74:0,-8.92871,-159.024 0/1:20:15,5:15:546:5:177:-10.2556,0,-43.4563 0/0:36:34,2:34:1240:2:74:0,-3.8112,-104.877 dDocent_Contig_7869 14 . A T 86.9265 . AB=0.184211;ABP=35.9253;AC=3;AF=0.375;AN=8;AO=7;CIGAR=1X;DP=59;DPB=59;DPRA=0.603175;EPP=18.2106;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=271;QR=2021;RO=52;RPL=0;RPP=18.2106;RPPR=115.927;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:21:21,0:21:816:0:0:0,-6.32163,-73.7611 0/1:23:20,3:20:785:3:117:-3.98622,0,-64.0515 0/1:11:9,2:9:344:2:79:-4.1863,0,-28.0038 0/1:4:2,2:2:76:2:75:-5.91622,0,-6.01014 dDocent_Contig_7870 139 . A G 37.0058 . AB=0;ABP=0;AC=2;AF=0.25;AN=8;AO=3;CIGAR=1X;DP=50;DPB=50;DPRA=0.724138;EPP=9.52472;EPPR=80.6751;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=56.5532;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.914894;PAO=0;PQA=0;PQR=0;PRO=0;QA=76;QR=1636;RO=47;RPL=0;RPP=9.52472;RPPR=105.07;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=3;SRP=80.6751;SRR=44;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:18:18,0:18:637:0:0:0,-5.41854,-48.159 0/0:20:18,2:18:616:2:42:0,-2.0319,-51.7733 0/0:11:11,0:11:383:0:0:0,-3.31133,-34.8049 1/1:1:0,1:0:0:1:34:-3.39891,-0.30103,0 dDocent_Contig_7871 108 . A G 614.121 . AB=0.438356;ABP=5.41974;AC=4;AF=0.5;AN=8;AO=32;CIGAR=1X;DP=73;DPB=73;DPRA=0;EPP=72.4974;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=39.1875;MQMR=46.7805;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.95122;PAO=0;PQA=0;PQR=0;PRO=0;QA=1031;QR=1301;RO=41;RPL=0;RPP=72.4974;RPPR=92.0407;RPR=32;RUN=1;SAF=0;SAP=72.4974;SAR=32;SRF=0;SRP=92.0407;SRR=41;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:7,8:7:228:8:266:-18.2601,0,-12.686 0/1:22:17,5:17:568:5:174:-8.85682,0,-44.5958 0/1:27:10,17:10:298:17:523:-38.1243,0,-18.9035 0/1:9:7,2:7:207:2:68:-3.56588,0,-16.1646 dDocent_Contig_7873 120 . C T 138.305 . AB=0;ABP=0;AC=2;AF=0.25;AN=8;AO=5;CIGAR=1X;DP=34;DPB=34;DPRA=0.517241;EPP=13.8677;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=31;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=173;QR=977;RO=29;RPL=0;RPP=13.8677;RPPR=65.983;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=65.983;SRR=29;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:11,0:11:381:0:0:0,-3.31133,-34.6235 0/0:11:11,0:11:362:0:0:0,-3.31133,-32.8966 1/1:5:0,5:0:0:5:173:-13.5294,-1.50515,0 0/0:7:7,0:7:234:0:0:0,-2.10721,-21.3871 dDocent_Contig_7874 24 . C T 328.828 . AB=0;ABP=0;AC=2;AF=0.25;AN=8;AO=9;CIGAR=1X;DP=68;DPB=68;DPRA=0.457627;EPP=22.5536;EPPR=131.127;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=358;QR=2349;RO=59;RPL=0;RPP=22.5536;RPPR=131.127;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=59;SRP=131.127;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:34:34,0:34:1349:0:0:0,-10.235,-121.675 1/1:9:0,9:0:0:9:358:-32.5818,-2.70927,0 0/0:19:19,0:19:756:0:0:0,-5.71957,-68.3628 0/0:6:6,0:6:244:0:0:0,-1.80618,-22.3388 dDocent_Contig_7875 48 . C T 91.7114 . AB=0.307692;ABP=7.18621;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=37;DPB=37;DPRA=1.625;EPP=11.6962;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=160;QR=1317;RO=33;RPL=0;RPP=11.6962;RPPR=74.6689;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:13:13,0:13:511:0:0:0,-3.91339,-46.3304 0/1:13:9,4:9:359:4:160:-10.87,0,-28.7596 0/0:4:4,0:4:161:0:0:0,-1.20412,-14.8753 0/0:7:7,0:7:286:0:0:0,-2.10721,-26.1148 dDocent_Contig_7876 66 . C G 58.2792 . AB=0.3;ABP=6.48466;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=53;DPB=53;DPRA=0.697674;EPP=9.52472;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=113;QR=2006;RO=50;RPL=3;RPP=9.52472;RPPR=111.584;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:19:19,0:19:756:0:0:0,-5.71957,-68.364 0/0:22:22,0:22:887:0:0:0,-6.62266,-80.1376 0/1:10:7,3:7:282:3:113:-7.52662,0,-22.7427 0/0:2:2,0:2:81:0:0:0,-0.60206,-7.68573 dDocent_Contig_7877 6 . C T 128.557 . AB=0.152174;ABP=99.688;AC=1;AF=0.125;AN=8;AO=22;CIGAR=1X;DP=210;DPB=210;DPRA=7.44444;EPP=50.7827;EPPR=13.4056;GTI=0;LEN=1;MEANALT=1;MQM=41.6818;MQMR=49.5904;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.414894;PAO=0;PQA=0;PQR=0;PRO=0;QA=752;QR=6626;RO=188;RPL=0;RPP=50.7827;RPPR=411.247;RPR=22;RUN=1;SAF=0;SAP=50.7827;SAR=22;SRF=79;SRP=13.4056;SRR=109;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:68:62,6:62:2156:6:209:0,-2.23772,-161.037 0/1:92:78,14:78:2768:14:473:-14.5547,0,-209.365 0/0:41:39,2:39:1413:2:70:0,-6.02705,-117.743 0/0:9:9,0:9:289:0:0:0,-2.70927,-20.3185 dDocent_Contig_7878 107 . N A 708.061 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=36;CIGAR=1X;DP=39;DPB=39;DPRA=0;EPP=81.1833;EPPR=0;GTI=0;LEN=1;MEANALT=1.75;MQM=60;MQMR=0;NS=4;NUMALT=1;ODDS=4.33681e-19;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=773;QR=0;RO=0;RPL=0;RPP=81.1833;RPPR=0;RPR=36;RUN=1;SAF=0;SAP=81.1833;SAR=36;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:6:0,5:0:0:5:72:-6.54131,-1.50515,0 1/1:4:0,4:0:0:4:76:-7.02971,-1.20412,0 1/1:19:0,18:0:0:18:429:-38.7652,-5.41854,0 1/1:10:0,9:0:0:9:196:-17.7708,-2.70927,0 dDocent_Contig_7879 1 . N G 57.9341 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=61;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:61:-5.79232,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_7880 27 . A G 288.173 . AB=0.253333;ABP=42.6469;AC=3;AF=0.375;AN=8;AO=19;CIGAR=2X;DP=98;DPB=98;DPRA=1.08696;EPP=44.2683;EPPR=172.385;GTI=0;LEN=1;MEANALT=1.33333;MQM=40.4211;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.947368;PAIREDR=0.935897;PAO=0;PQA=0;PQR=0;PRO=0;QA=754;QR=3002;RO=78;RPL=0;RPP=44.2683;RPPR=172.385;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=78;SRP=172.385;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:24:16,7:16:626:7:279:-16.0048,0,-49.345 0|1:41:35,6:35:1335:6:239:-3.40166,0,-108.079 0|0:23:23,0:23:885:0:0:0,-6.92369,-79.9662 0|1:10:4,6:4:156:6:236:-14.8045,0,-11.4061 dDocent_Contig_7882 10 . G T 261.603 . AB=0.26087;ABP=25.858;AC=2;AF=0.25;AN=8;AO=13;CIGAR=1X;DP=87;DPB=87;DPRA=0.927536;EPP=31.2394;EPPR=163.699;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=515;QR=2976;RO=74;RPL=0;RPP=31.2394;RPPR=163.699;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=74;SRP=163.699;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:8,5:8:322:5:204:-14.8306,0,-25.4344 0/0:18:17,1:17:693:1:41:0,-1.32397,-58.6032 0/1:33:26,7:26:1032:7:270:-14.7275,0,-83.2316 0/0:23:23,0:23:929:0:0:0,-6.92369,-83.9124 dDocent_Contig_7883 40 . C T 78.7442 . AB=0.222222;ABP=15.074;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=64;DPB=64;DPRA=1.17391;EPP=11.6962;EPPR=133.299;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=159;QR=2408;RO=60;RPL=0;RPP=11.6962;RPPR=133.299;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:14,4:14:561:4:159:-9.27229,0,-45.4126 0/0:20:20,0:20:808:0:0:0,-6.0206,-73.036 0/0:22:22,0:22:890:0:0:0,-6.62266,-80.4044 0/0:4:4,0:4:149:0:0:0,-1.20412,-13.7683 dDocent_Contig_7884 87 . T A 1325.05 . AB=0.679012;ABP=25.5561;AC=4;AF=0.5;AN=8;AO=55;CIGAR=1X;DP=81;DPB=81;DPRA=0;EPP=122.441;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1811;QR=786;RO=25;RPL=55;RPP=122.441;RPPR=57.2971;RPR=0;RUN=1;SAF=55;SAP=122.441;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:8,17:8:241:17:546:-41.9186,0,-14.4614 0/1:31:8,22:8:257:22:723:-56.075,0,-14.1384 0/1:19:7,12:7:222:12:410:-31.5091,0,-14.5719 0/1:6:2,4:2:66:4:132:-10.4002,0,-4.46218 dDocent_Contig_7886 27 . G A 311.51 . AB=0.295455;ABP=19.0002;AC=1;AF=0.125;AN=8;AO=13;CIGAR=1X;DP=94;DPB=94;DPRA=2.64;EPP=31.2394;EPPR=178.9;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=505;QR=3197;RO=81;RPL=0;RPP=31.2394;RPPR=178.9;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=81;SRP=178.9;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:44:31,13:31:1229:13:505:-32.5489,0,-97.6367 0/0:36:36,0:36:1422:0:0:0,-10.8371,-128.236 0/0:8:8,0:8:306:0:0:0,-2.40824,-27.8941 0/0:6:6,0:6:240:0:0:0,-1.80618,-21.9757 dDocent_Contig_7887 7 . T C 83.0709 . AB=0.192308;ABP=24.391;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=119;DPB=119;DPRA=0.83871;EPP=13.8677;EPPR=241.948;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.929825;PAO=0;PQA=0;PQR=0;PRO=0;QA=194;QR=4317;RO=114;RPL=0;RPP=13.8677;RPPR=250.558;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=113;SRP=241.948;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:31:31,0:31:1187:0:0:0,-9.33193,-107.129 0/0:31:31,0:31:1155:0:0:0,-9.33193,-104.246 0/1:26:21,5:21:797:5:194:-10.0061,0,-64.2263 0/0:31:31,0:31:1178:0:0:0,-9.33193,-106.318 dDocent_Contig_7888 18 . G T 256.757 . AB=0.45;ABP=3.44459;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X;DP=100;DPB=100;DPRA=0.75;EPP=22.5536;EPPR=200.614;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.011;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.967033;PAO=0;PQA=0;PQR=0;PRO=0;QA=367;QR=3532;RO=91;RPL=0;RPP=22.5536;RPPR=200.614;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=91;SRP=200.614;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:48:48,0:48:1861:0:0:0,-14.4494,-166.682 0/1:20:11,9:11:433:9:367:-27.3747,0,-33.3015 0/0:17:17,0:17:662:0:0:0,-5.11751,-58.1073 0/0:15:15,0:15:576:0:0:0,-4.51545,-52.1759 dDocent_Contig_7889 25 . A G 509.66 . AB=0.239583;ABP=59.5591;AC=3;AF=0.375;AN=8;AO=25;CIGAR=1X;DP=129;DPB=129;DPRA=0;EPP=57.2971;EPPR=228.843;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1012;QR=4151;RO=104;RPL=0;RPP=57.2971;RPPR=228.843;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=104;SRP=228.843;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:44:35,9:35:1399:9:366:-20.0598,0,-112.917 0/1:32:27,5:27:1079:5:203:-9.0201,0,-87.7668 0/0:33:31,2:31:1222:2:77:0,-2.62485,-102.939 0/1:20:11,9:11:451:9:366:-27.284,0,-34.9251 dDocent_Contig_7890 21 . A C 781.817 . AB=0.251908;ABP=73.0444;AC=3;AF=0.375;AN=8;AO=33;CIGAR=1X;DP=140;DPB=140;DPRA=4.85185;EPP=74.6689;EPPR=235.358;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1338;QR=4280;RO=107;RPL=0;RPP=74.6689;RPPR=235.358;RPR=33;RUN=1;SAF=33;SAP=74.6689;SAR=0;SRF=107;SRP=235.358;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:35:32,3:32:1268:3:118:-0.466457,0,-103.857 0/1:49:42,7:42:1696:7:286:-11.3643,0,-138.109 0/1:47:24,23:24:965:23:934:-70.2121,0,-73.001 0/0:9:9,0:9:351:0:0:0,-2.70927,-31.9485 dDocent_Contig_7891 16 . C T 63.722 . AB=0.106796;ABP=141.331;AC=1;AF=0.125;AN=8;AO=26;CIGAR=1X;DP=307;DPB=307;DPRA=0;EPP=59.4686;EPPR=613.194;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1030;QR=11208;RO=281;RPL=0;RPP=59.4686;RPPR=613.194;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=281;SRP=613.194;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:103:92,11:92:3670:11:427:-7.76983,0,-299.31 0/0:62:57,5:57:2266:5:197:0,-0.559831,-186.011 0/0:96:89,7:89:3546:7:283:0,-3.05588,-293.336 0/0:46:43,3:43:1726:3:123:0,-2.38259,-144.096 dDocent_Contig_7894 76 . C G 310.972 . AB=0.293103;ABP=24.5753;AC=4;AF=0.5;AN=8;AO=17;CIGAR=1X;DP=58;DPB=58;DPRA=0;EPP=39.9253;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.780488;PAO=0;PQA=0;PQR=0;PRO=0;QA=606;QR=1415;RO=41;RPL=17;RPP=39.9253;RPPR=92.0407;RPR=0;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:18,3:18:622:3:111:-4.03229,0,-49.9835 0/1:19:9,10:9:314:10:351:-26.2043,0,-22.8783 0/1:8:6,2:6:210:2:74:-4.61764,0,-16.8342 0/1:10:8,2:8:269:2:70:-3.6371,0,-21.528 dDocent_Contig_7895 8 . A G 1555.34 . AB=0.349112;ABP=36.4304;AC=5;AF=0.625;AN=8;AO=59;CIGAR=1M1X1M;DP=169;DPB=167.667;DPRA=0;EPP=131.127;EPPR=168.042;GTI=0;LEN=1;MEANALT=2.25;MQM=56.7966;MQMR=58.7368;NS=4;NUMALT=3;ODDS=2.77556e-17;PAIRED=0.677966;PAIREDR=0.881579;PAO=0;PQA=0;PQR=0;PRO=0;QA=2206;QR=2907;RO=76;RPL=0;RPP=131.127;RPPR=168.042;RPR=59;RUN=1;SAF=59;SAP=131.127;SAR=0;SRF=76;SRP=168.042;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:41:12,0,14,15:12:457:0,14,15:0,530,561:-48.2961,-51.9084,-88.2938,-8.46625,-44.8541,-40.6397,-7.05819,-43.4404,0,-38.9249 0|1:50:32,0,8,10:32:1214:0,8,10:0,303,367:-19.5436,-29.1766,-128.73,-4.32612,-103.888,-101.48,0,-99.5459,-74.7048,-96.5356 0|1:67:25,4,7,31:25:961:4,7,31:145,271,1165:-87.9503,-89.1437,-166.837,-73.2087,-145.778,-150.008,0,-72.6087,-56.6702,-69.6057 0|1:11:7,0,1,3:7:275:0,1,3:0,39,113:-7.14233,-9.24954,-29.4842,-6.04035,-26.2757,-25.9747,0,-20.22,-17.0098,-19.3169 dDocent_Contig_7897 110 . G A 212.913 . AB=0.529412;ABP=3.13803;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=53;DPB=53;DPRA=0.944444;EPP=22.5536;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=310;QR=1542;RO=44;RPL=0;RPP=22.5536;RPPR=98.5551;RPR=9;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=98.5551;SRR=44;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:27:27,0:27:947:0:0:0,-8.12781,-85.5442 ./.:.:.:.:.:.:.:. 0/0:9:9,0:9:311:0:0:0,-2.70927,-28.3235 0/1:17:8,9:8:284:9:310:-23.1152,0,-20.786 dDocent_Contig_7898 14 . T A 1178.14 . AB=0.387387;ABP=15.2371;AC=3;AF=0.375;AN=8;AO=43;CIGAR=1X;DP=132;DPB=132;DPRA=1.7619;EPP=96.3836;EPPR=196.271;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.9101;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.977528;PAO=0;PQA=0;PQR=0;PRO=0;QA=1729;QR=3548;RO=89;RPL=0;RPP=96.3836;RPPR=196.271;RPR=43;RUN=1;SAF=43;SAP=96.3836;SAR=0;SRF=89;SRP=196.271;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:21:21,0:21:819:0:0:0,-6.32163,-74.0102 0/1:72:45,27:45:1818:27:1095:-77.1592,0,-142.134 0/1:23:19,4:19:748:4:161:-7.95179,0,-60.7149 0/1:16:4,12:4:163:12:473:-38.1012,0,-10.2419 dDocent_Contig_7899 12 . G A 505.607 . AB=0.0531915;ABP=166.009;AC=2;AF=0.25;AN=8;AO=5;CIGAR=4M1I1X1M2X1M1X;DP=119;DPB=125.3;DPRA=3.61538;EPP=13.8677;EPPR=174.557;GTI=0;LEN=1;MEANALT=3;MQM=58;MQMR=60;NS=4;NUMALT=4;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=194;QR=3021;RO=79;RPL=0;RPP=13.8677;RPPR=174.557;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=79;SRP=174.557;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:12:8,0,0,2,0:8:302:0,0,2,0:0,0,78,0:-3.9408,-6.34904,-31.0895,-6.34904,-31.0895,-31.0895,0,-24.7332,-24.7332,-24.1311,-6.34904,-31.0895,-31.0895,-24.7332,-31.0895 0|1:47:30,15,2,0,0:30:1150:15,2,0,0:582,78,0,0:-38.7859,0,-89.8643,-41.4186,-87.9814,-135.199,-47.8168,-94.3798,-135.801,-142.199,-47.8168,-94.3798,-135.801,-142.199,-142.199 0|1:47:30,7,3,0,6:30:1146:7,3,0,6:271,116,0,229:-13.2307,0,-91.9164,-12.7332,-84.4952,-105.853,-22.2616,-94.0236,-106.756,-116.285,-3.47887,-75.2391,-87.9718,-97.5001,-95.694 0|0:13:11,0,0,0,0:11:423:0,0,0,0:0,0,0,0:0,-3.31133,-38.0313,-3.31133,-38.0313,-38.0313,-3.31133,-38.0313,-38.0313,-38.0313,-3.31133,-38.0313,-38.0313,-38.0313,-38.0313 dDocent_Contig_7900 19 . T C 587.061 . AB=0.252427;ABP=57.8452;AC=2;AF=0.25;AN=8;AO=26;CIGAR=1X;DP=181;DPB=181;DPRA=1.32051;EPP=59.4686;EPPR=339.589;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1027;QR=6177;RO=155;RPL=0;RPP=59.4686;RPPR=339.589;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=155;SRP=339.589;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:60:52,8:52:2086:8:311:-10.2865,0,-169.859 0/1:43:25,18:25:980:18:716:-51.8175,0,-75.5428 0/0:30:30,0:30:1203:0:0:0,-9.0309,-108.543 0/0:48:48,0:48:1908:0:0:0,-14.4494,-171.909 dDocent_Contig_7901 11 . A C 506.079 . AB=0.268293;ABP=41.2494;AC=3;AF=0.375;AN=8;AO=23;CIGAR=1X;DP=108;DPB=108;DPRA=0;EPP=52.9542;EPPR=187.585;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=0.73913;PAIREDR=0.976471;PAO=0;PQA=0;PQR=0;PRO=0;QA=925;QR=3346;RO=85;RPL=0;RPP=52.9542;RPPR=187.585;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=85;SRP=187.585;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:26:25,1:25:982:1:41:0,-3.73221,-84.5817 0/1:47:30,17:30:1163:17:684:-47.7389,0,-90.7963 0/1:16:14,2:14:567:2:78:-2.58682,0,-46.556 0/1:19:16,3:16:634:3:122:-5.65292,0,-51.6745 dDocent_Contig_7904 10 . A G 119.241 . AB=0.137931;ABP=36.0317;AC=2;AF=0.25;AN=8;AO=4;CIGAR=1X2M1X;DP=52;DPB=52;DPRA=2.9;EPP=11.6962;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=159;QR=1741;RO=44;RPL=0;RPP=11.6962;RPPR=98.5551;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:18:15,3,0:15:591:3,0:119,0:-5.67685,0,-48.1101,-10.1923,-49.0132,-58.8097 0|0:18:14,0,4:14:550:0,4:0,163:-9.63989,-13.8543,-59.0776,0,-45.627,-44.4229 0|1:11:10,1,0:10:399:1,0:40,0:-0.684349,0,-32.9582,-3.69465,-33.2592,-36.5544 0|0:5:5,0,0:5:201:0,0:0,0:0,-1.50515,-18.4709,-1.50515,-18.4709,-18.4709 dDocent_Contig_7905 35 . C A 39.5401 . AB=0.15;ABP=24.2907;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=68;DPB=68;DPRA=1.25;EPP=9.52472;EPPR=144.156;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=2549;RO=65;RPL=0;RPP=9.52472;RPPR=144.156;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=65;SRP=144.156;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:17,3:17:642:3:122:-5.35189,0,-52.0727 0/0:29:29,0:29:1151:0:0:0,-8.72987,-103.87 0/0:11:11,0:11:439:0:0:0,-3.31133,-39.8648 0/0:8:8,0:8:317:0:0:0,-2.40824,-28.8959 dDocent_Contig_7906 94 . T C 32.8512 . AB=0.428571;ABP=3.32051;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=60;DPB=60;DPRA=0.777778;EPP=13.8677;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.981818;PAO=0;PQA=0;PQR=0;PRO=0;QA=146;QR=1898;RO=55;RPL=5;RPP=13.8677;RPPR=122.441;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:18:17,1:17:591:1:35:0,-1.91991,-50.0189 0/0:18:18,0:18:619:0:0:0,-5.41854,-56.0338 0/0:17:16,1:16:552:1:35:0,-1.61888,-46.5079 0/1:7:4,3:4:136:3:76:-4.98383,0,-10.4685 dDocent_Contig_7909 77 . T C 75.761 . AB=0.133333;ABP=55.5599;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=88;DPB=88;DPRA=3.13953;EPP=16.0391;EPPR=181.071;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=246;QR=3210;RO=82;RPL=6;RPP=16.0391;RPPR=181.071;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=82;SRP=181.071;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:45:39,6:39:1516:6:246:-8.97377,0,-123.133 0/0:26:26,0:26:1015:0:0:0,-7.82678,-91.637 0/0:15:15,0:15:606:0:0:0,-4.51545,-54.878 0/0:2:2,0:2:73:0:0:0,-0.60206,-6.92919 dDocent_Contig_7910 20 . C T 317.143 . AB=0.0535714;ABP=293.832;AC=0;AF=0;AN=8;AO=9;CIGAR=1X2M1X;DP=319;DPB=319;DPRA=0;EPP=22.5536;EPPR=528.507;GTI=0;LEN=1;MEANALT=3.5;MQM=33;MQMR=30.6281;NS=4;NUMALT=2;ODDS=2.77556e-17;PAIRED=1;PAIREDR=0.334711;PAO=0;PQA=0;PQR=0;PRO=0;QA=350;QR=9573;RO=242;RPL=0;RPP=22.5536;RPPR=528.507;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=242;SRP=528.507;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:119:85,8,22:85:3363:8,22:310,869:-8.87779,-13.8435,-176.228,0,-144.117,-158.098 0|0:118:97,0,16:97:3856:0,16:0,612:-3.87442,-33.0743,-198.846,0,-165.706,-160.89 0|0:49:32,1,13:32:1245:1,13:40,468:-24.3336,-31.3674,-101.964,0,-68.3516,-67.0374 0|0:33:28,0,5:28:1109:0,5:0,185:-1.37706,-9.8059,-53.8924,0,-44.3268,-42.8216 dDocent_Contig_7911 34 . C T 250.864 . AB=0.222222;ABP=39.2015;AC=1;AF=0.125;AN=8;AO=12;CIGAR=1X;DP=94;DPB=94;DPRA=4.05;EPP=29.068;EPPR=181.071;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=471;QR=3284;RO=82;RPL=0;RPP=29.068;RPPR=181.071;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=82;SRP=181.071;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:54:42,12:42:1685:12:471:-26.4843,0,-135.619 0/0:18:18,0:18:720:0:0:0,-5.41854,-65.1235 0/0:18:18,0:18:715:0:0:0,-5.41854,-64.6733 0/0:4:4,0:4:164:0:0:0,-1.20412,-15.1499 dDocent_Contig_7913 16 . C T 437.961 . AB=0.395349;ABP=7.10075;AC=3;AF=0.375;AN=8;AO=17;CIGAR=1X;DP=47;DPB=47;DPRA=3.58333;EPP=39.9253;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=678;QR=1202;RO=30;RPL=0;RPP=39.9253;RPPR=68.1545;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:4:4,0:4:162:0:0:0,-1.20412,-14.967 0/1:20:15,5:15:596:5:202:-12.5413,0,-47.9569 0/1:15:6,9:6:241:9:362:-28.4287,0,-17.551 0/1:8:5,3:5:203:3:114:-8.22398,0,-16.2448 dDocent_Contig_7914 7 . T C 156.078 . AB=0.210526;ABP=30.668;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=146;DPB=146;DPRA=1.05556;EPP=20.3821;EPPR=294.051;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.7971;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.985507;PAO=0;PQA=0;PQR=0;PRO=0;QA=312;QR=5245;RO=138;RPL=0;RPP=20.3821;RPPR=302.673;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=137;SRP=294.051;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:38:30,8:30:1136:8:312:-17.0058,0,-91.0989 0/0:36:36,0:36:1369:0:0:0,-10.8371,-123.494 0/0:41:41,0:41:1550:0:0:0,-12.3422,-139.736 0/0:31:31,0:31:1190:0:0:0,-9.33193,-107.397 dDocent_Contig_7915 111 . G T 98.6126 . AB=0.25;ABP=16.0391;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=67;DPB=67;DPRA=1.67442;EPP=16.0391;EPPR=135.47;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=205;QR=2098;RO=61;RPL=0;RPP=16.0391;RPPR=135.47;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=135.47;SRR=61;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:31:31,0:31:1066:0:0:0,-9.33193,-96.2437 0/1:24:18,6:18:613:6:205:-11.56,0,-48.261 0/0:10:10,0:10:348:0:0:0,-3.0103,-31.655 0/0:2:2,0:2:71:0:0:0,-0.60206,-6.74206 dDocent_Contig_7916 107 . N G 172.723 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=5;CIGAR=1X;DP=5;DPB=5;DPRA=0;EPP=13.8677;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=1.69407e-21;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=175;QR=0;RO=0;RPL=0;RPP=13.8677;RPPR=0;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1:0,1:0:0:1:35:-3.49863,-0.30103,0 ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:105:-9.79616,-0.90309,0 1/1:1:0,1:0:0:1:35:-3.49863,-0.30103,0 dDocent_Contig_7917 29 . T A 715.236 . AB=0.0588235;ABP=60.4905;AC=0;AF=0;AN=8;AO=2;CIGAR=1X2M1X;DP=61;DPB=61;DPRA=5.23077;EPP=7.35324;EPPR=76.8404;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=79;QR=1310;RO=34;RPL=0;RPP=7.35324;RPPR=76.8404;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:14:10,0,4:10:388:0,4:0,161:-10.6611,-13.6714,-45.5361,0,-32.2627,-31.0585 0|0:34:11,2,21:11:417:2,21:79,822:-64.2603,-61.0704,-94.6434,0,-27.6625,-27.8443 0|0:9:9,0,0:9:356:0,0:0,0:0,-2.70927,-32.4016,-2.70927,-32.4016,-32.4016 0|0:4:4,0,0:4:149:0,0:0,0:0,-1.20412,-13.77,-1.20412,-13.77,-13.77 dDocent_Contig_7918 70 . T C 282.445 . AB=0.266667;ABP=24.2907;AC=1;AF=0.125;AN=8;AO=13;CIGAR=1X;DP=155;DPB=155;DPRA=0.845238;EPP=31.2394;EPPR=311.359;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.992958;PAO=0;PQA=0;PQR=0;PRO=0;QA=514;QR=5659;RO=142;RPL=13;RPP=31.2394;RPPR=311.359;RPR=0;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=142;SRP=311.359;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:45:33,12:33:1322:12:476:-29.6425,0,-105.693 0/0:78:78,0:78:3093:0:0:0,-23.4803,-278.431 0/0:26:25,1:25:1014:1:38:0,-4.02951,-87.7555 0/0:6:6,0:6:230:0:0:0,-1.80618,-21.0632 dDocent_Contig_7919 26 . G A 2275.75 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=64;CIGAR=1X;DP=64;DPB=64;DPRA=0;EPP=141.985;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=2507;QR=0;RO=0;RPL=0;RPP=141.985;RPPR=0;RPR=64;RUN=1;SAF=64;SAP=141.985;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:18:0,18:0:0:18:701:-63.4183,-5.41854,0 1/1:19:0,19:0:0:19:736:-66.5626,-5.71957,0 1/1:17:0,17:0:0:17:670:-60.6326,-5.11751,0 1/1:10:0,10:0:0:10:400:-36.3595,-3.0103,0 dDocent_Contig_7920 14 . C T 2874.91 . AB=0.0902256;ABP=196.99;AC=5;AF=0.625;AN=8;AO=12;CIGAR=1X4M2D6M;DP=154;DPB=158.923;DPRA=0;EPP=29.068;EPPR=100.727;GTI=0;LEN=1;MEANALT=3.33333;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=471;QR=1791;RO=45;RPL=0;RPP=29.068;RPPR=100.727;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:46:10,33,0,3:10:390:33,0,3:1298,0,115:-103.761,0,-22.1279,-106.771,-32.0618,-138.827,-97.3338,-22.6254,-129.39,-128.487 0|1:50:26,16,3,2:26:1043:16,3,2:617,120,79:-42.8495,0,-81.1511,-40.7882,-76.0818,-125.838,-44.1742,-79.4668,-120.241,-129.524 1|1:37:3,27,0,7:3:116:27,0,7:1080,0,277:-101.343,-13.2784,-14.6759,-102.247,-22.8037,-111.774,-79.45,0,-88.9766,-86.8694 0|1:21:6,15,0,0:6:242:15,0,0:588,0,0:-46.9358,0,-15.8359,-48.742,-20.3513,-68.6937,-48.742,-20.3513,-68.6937,-68.6937 dDocent_Contig_7921 13 . G A 370.168 . AB=0.3;ABP=20.3821;AC=2;AF=0.25;AN=8;AO=15;CIGAR=1X;DP=89;DPB=89;DPRA=1.28205;EPP=35.5824;EPPR=163.699;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=57.5135;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.945946;PAO=0;PQA=0;PQR=0;PRO=0;QA=608;QR=2981;RO=74;RPL=0;RPP=35.5824;RPPR=163.699;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=74;SRP=163.699;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:29:29,0:29:1171:0:0:0,-8.72987,-105.666 0/0:10:10,0:10:393:0:0:0,-3.0103,-35.7227 0/1:24:12,12:12:485:12:486:-36.866,0,-36.7756 0/1:26:23,3:23:932:3:122:-3.54571,0,-66.6948 dDocent_Contig_7923 23 . T C 934.361 . AB=0.373626;ABP=15.6335;AC=2;AF=0.25;AN=8;AO=34;CIGAR=1X;DP=176;DPB=176;DPRA=1.07059;EPP=76.8404;EPPR=311.359;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.941176;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1373;QR=5713;RO=142;RPL=0;RPP=76.8404;RPPR=311.359;RPR=34;RUN=1;SAF=34;SAP=76.8404;SAR=0;SRF=142;SRP=311.359;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:64:39,25:39:1568:25:1010:-71.9278,0,-122.091 0/0:69:69,0:69:2779:0:0:0,-20.7711,-250.215 0/1:27:18,9:18:719:9:363:-24.9063,0,-56.9023 0/0:16:16,0:16:647:0:0:0,-4.81648,-58.5634 dDocent_Contig_7924 19 . C G 2128.09 . AB=0.533333;ABP=4.31318;AC=4;AF=0.5;AN=8;AO=72;CIGAR=1X;DP=135;DPB=135;DPRA=0;EPP=159.356;EPPR=139.813;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2884;QR=2501;RO=63;RPL=0;RPP=159.356;RPPR=139.813;RPR=72;RUN=1;SAF=72;SAP=159.356;SAR=0;SRF=63;SRP=139.813;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:54:27,27:27:1088:27:1068:-80.1448,0,-81.9499 0/1:37:23,14:23:915:14:558:-39.4226,0,-71.5177 0/1:29:6,23:6:229:23:939:-76.0794,0,-12.2392 0/1:15:7,8:7:269:8:319:-24.5605,0,-20.0529 dDocent_Contig_7925 72 . T C 725.675 . AB=0.3;ABP=37.7539;AC=2;AF=0.25;AN=8;AO=30;CIGAR=1X;DP=165;DPB=165;DPRA=1.53846;EPP=68.1545;EPPR=296.159;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1171;QR=5059;RO=135;RPL=30;RPP=68.1545;RPPR=296.159;RPR=0;RUN=1;SAF=30;SAP=68.1545;SAR=0;SRF=135;SRP=296.159;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:37:37,0:37:1413:0:0:0,-11.1381,-127.438 0/1:91:63,28:63:2341:28:1094:-71.3656,0,-183.497 0/0:28:28,0:28:1061:0:0:0,-8.42884,-95.7887 0/1:9:7,2:7:244:2:77:-4.59956,0,-19.5787 dDocent_Contig_7926 32 . C A 343.265 . AB=0.48;ABP=3.09716;AC=1;AF=0.125;AN=8;AO=12;CIGAR=1X;DP=84;DPB=84;DPRA=1.27119;EPP=29.068;EPPR=159.356;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=480;QR=2861;RO=72;RPL=0;RPP=29.068;RPPR=159.356;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=72;SRP=159.356;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:31:31,0:31:1242:0:0:0,-9.33193,-112.051 0/1:25:13,12:13:527:12:480:-36.0254,0,-40.2514 0/0:14:14,0:14:551:0:0:0,-4.21442,-49.9276 0/0:14:14,0:14:541:0:0:0,-4.21442,-49.0238 dDocent_Contig_7929 12 . T C 67.7235 . AB=0.125;ABP=90.9549;AC=3;AF=0.375;AN=8;AO=9;CIGAR=1X;DP=107;DPB=107;DPRA=0.685714;EPP=22.5536;EPPR=174.601;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=57.2755;NS=4;NUMALT=1;ODDS=0;PAIRED=0.777778;PAIREDR=0.806122;PAO=0;PQA=0;PQR=0;PRO=0;QA=361;QR=3847;RO=98;RPL=0;RPP=22.5536;RPPR=215.815;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=93;SRP=174.601;SRR=5;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:35:35,0:35:1382:0:0:0,-10.536,-122.245 0/1:28:24,4:24:925:4:161:-6.44664,0,-72.359 0/1:37:33,4:33:1303:4:160:-3.64481,0,-106.384 0/1:7:6,1:6:237:1:40:-1.88847,0,-19.5902 dDocent_Contig_7930 1 . N G 76.8682 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:81:-7.68573,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_7931 98 . N G 1089.25 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=35;CIGAR=1X;DP=35;DPB=35;DPRA=0;EPP=79.0118;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=4;NUMALT=1;ODDS=3.38813e-21;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1189;QR=0;RO=0;RPL=35;RPP=79.0118;RPPR=0;RPR=0;RUN=1;SAF=35;SAP=79.0118;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:20:0,20:0:0:20:683:-61.7903,-6.0206,0 1/1:4:0,4:0:0:4:138:-12.7604,-1.20412,0 1/1:3:0,3:0:0:3:97:-9.05098,-0.90309,0 1/1:8:0,8:0:0:8:271:-24.7206,-2.40824,0 dDocent_Contig_7932 26 . A G 650.812 . AB=0.378788;ABP=11.433;AC=3;AF=0.375;AN=8;AO=26;CIGAR=1X;DP=84;DPB=84;DPRA=0;EPP=59.4686;EPPR=128.956;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1032;QR=2340;RO=58;RPL=0;RPP=59.4686;RPPR=128.956;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:18:17,1:17:686:1:41:0,-1.32397,-57.9764 0/1:35:27,8:27:1094:8:317:-18.3584,0,-88.2076 0/1:25:13,12:13:520:12:474:-35.4823,0,-39.6199 0/1:6:1,5:1:40:5:200:-16.5734,0,-2.1895 dDocent_Contig_7933 107 . N G 798.332 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=26;CIGAR=1X;DP=26;DPB=26;DPRA=0;EPP=59.4686;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=866;QR=0;RO=0;RPL=0;RPP=59.4686;RPPR=0;RPR=26;RUN=1;SAF=0;SAP=59.4686;SAR=26;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:10:0,10:0:0:10:343:-31.2022,-3.0103,0 1/1:5:0,5:0:0:5:142:-13.06,-1.50515,0 1/1:5:0,5:0:0:5:171:-15.7265,-1.50515,0 1/1:6:0,6:0:0:6:210:-19.2425,-1.80618,0 dDocent_Contig_7934 32 . A G 141.177 . AB=0.625;ABP=4.09604;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X3M1X2M1X;DP=48;DPB=48;DPRA=0.6;EPP=13.8677;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=195;QR=1690;RO=43;RPL=0;RPP=13.8677;RPPR=96.3836;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:8:3,5:3:119:5:195:-15.5156,0,-8.68694 0|0:15:15,0:15:591:0:0:0,-4.51545,-53.5318 0|0:15:15,0:15:594:0:0:0,-4.51545,-53.8019 0|0:10:10,0:10:386:0:0:0,-3.0103,-35.0954 dDocent_Contig_7935 51 . G T 355.517 . AB=0.295082;ABP=25.259;AC=4;AF=0.5;AN=8;AO=18;CIGAR=2X;DP=61;DPB=61;DPRA=0;EPP=42.0968;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=646;QR=1707;RO=43;RPL=18;RPP=42.0968;RPPR=96.3836;RPR=0;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:16:13,3:13:514:3:103:-4.79304,0,-41.79 0|1:22:16,6:16:633:6:229:-14.3522,0,-50.6824 0|1:8:1,7:1:40:7:260:-21.3475,0,-1.58744 0|1:15:13,2:13:520:2:54:-0.613832,0,-42.6312 dDocent_Contig_7936 16 . C T 2694.88 . AB=0.666667;ABP=35.5824;AC=4;AF=0.5;AN=8;AO=90;CIGAR=1X1M1X;DP=135;DPB=135;DPRA=0;EPP=198.443;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.9;PAIREDR=0.955556;PAO=0;PQA=0;PQR=0;PRO=0;QA=3514;QR=1791;RO=45;RPL=0;RPP=198.443;RPPR=100.727;RPR=90;RUN=1;SAF=90;SAP=198.443;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:38:19,19:19:766:19:743:-55.7567,0,-57.8223 0|1:57:12,45:12:458:45:1750:-140.585,0,-24.3962 0|1:31:12,19:12:487:19:742:-57.7711,0,-34.8497 0|1:9:2,7:2:80:7:279:-22.7722,0,-4.88252 dDocent_Contig_7937 19 . G A 55.5143 . AB=0.214286;ABP=12.937;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=70;DPB=70;DPRA=0.75;EPP=9.52472;EPPR=148.499;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=123;QR=2580;RO=67;RPL=0;RPP=9.52472;RPPR=148.499;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=67;SRP=148.499;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:41:41,0:41:1575:0:0:0,-12.3422,-142.003 0/0:10:10,0:10:388:0:0:0,-3.0103,-35.2738 0/1:14:11,3:11:417:3:123:-7.25037,0,-33.6646 0/0:5:5,0:5:200:0:0:0,-1.50515,-18.3799 dDocent_Contig_7938 63 . C T 57.3689 . AB=0.151515;ABP=37.8197;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X;DP=137;DPB=137;DPRA=1.84127;EPP=22.5536;EPPR=280.959;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=347;QR=5043;RO=128;RPL=9;RPP=22.5536;RPPR=280.959;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=128;SRP=280.959;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:52:49,3:49:1959:3:118:0,-4.65105,-165.505 0/1:33:28,5:28:1083:5:189:-7.43586,0,-87.8191 0/0:31:30,1:30:1179:1:40:0,-5.33625,-102.389 0/0:21:21,0:21:822:0:0:0,-6.32163,-74.2922 dDocent_Contig_7939 18 . T A 576.605 . AB=0.342857;ABP=18.0245;AC=3;AF=0.375;AN=8;AO=24;CIGAR=1X;DP=72;DPB=72;DPRA=11.6667;EPP=55.1256;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.9375;PAO=0;PQA=0;PQR=0;PRO=0;QA=923;QR=1917;RO=48;RPL=0;RPP=55.1256;RPPR=107.241;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:16,8:16:640:8:281:-18.3909,0,-50.7085 0/1:26:13,13:13:503:13:519:-39.2231,0,-37.7857 0/1:20:17,3:17:692:3:123:-5.44419,0,-56.5878 0/0:2:2,0:2:82:0:0:0,-0.60206,-7.77968 dDocent_Contig_7940 151 . G A 674.342 . AB=0.25641;ABP=63.3104;AC=2;AF=0.25;AN=8;AO=30;CIGAR=1X;DP=157;DPB=157;DPRA=2.925;EPP=68.1545;EPPR=278.787;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1171;QR=4940;RO=127;RPL=0;RPP=68.1545;RPPR=278.787;RPR=30;RUN=1;SAF=0;SAP=68.1545;SAR=30;SRF=0;SRP=278.787;SRR=127;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:57:35,22:35:1330:22:847:-59.3647,0,-102.794 0/1:60:52,8:52:2046:8:324:-11.4674,0,-166.266 0/0:35:35,0:35:1366:0:0:0,-10.536,-123.193 0/0:5:5,0:5:198:0:0:0,-1.50515,-18.1972 dDocent_Contig_7941 98 . N C 475.726 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=15;CIGAR=2X;DP=15;DPB=15;DPRA=0;EPP=35.5824;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=512;QR=0;RO=0;RPL=15;RPP=35.5824;RPPR=0;RPR=0;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. 1|1:10:0,10:0:0:10:341:-31.0201,-3.0103,0 1|1:1:0,1:0:0:1:35:-3.49863,-0.30103,0 1|1:4:0,4:0:0:4:136:-12.5758,-1.20412,0 dDocent_Contig_7942 149 . A G 39.7358 . AB=0.285714;ABP=5.80219;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=56;DPB=56;DPRA=3;EPP=9.52472;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=123;QR=2034;RO=53;RPL=0;RPP=9.52472;RPPR=118.098;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=118.098;SRR=53;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:9:9,0:9:341:0:0:0,-2.70927,-31.0374 0/0:35:34,1:34:1294:1:41:0,-6.44148,-112.64 0/1:7:5,2:5:201:2:82:-5.67247,0,-16.3637 0/0:5:5,0:5:198:0:0:0,-1.50515,-18.1965 dDocent_Contig_7943 152 . T G 599.182 . AB=0.387097;ABP=9.87495;AC=4;AF=0.5;AN=8;AO=24;CIGAR=1X;DP=62;DPB=62;DPRA=0;EPP=55.1256;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=939;QR=1488;RO=38;RPL=0;RPP=55.1256;RPPR=85.5263;RPR=24;RUN=1;SAF=0;SAP=55.1256;SAR=24;SRF=0;SRP=85.5263;SRR=38;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:16,14:16:631:14:558:-41.5289,0,-48.09 0/1:18:14,4:14:540:4:151:-8.53459,0,-43.5117 0/1:12:7,5:7:276:5:190:-13.8512,0,-21.5946 0/1:2:1,1:1:41:1:40:-3.39362,0,-3.49251 dDocent_Contig_7944 108 . A G 311.851 . AB=0.289855;ABP=29.4771;AC=3;AF=0.375;AN=8;AO=20;CIGAR=1X;DP=84;DPB=84;DPRA=1.53333;EPP=46.4397;EPPR=141.985;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=627;QR=2156;RO=64;RPL=0;RPP=46.4397;RPPR=141.985;RPR=20;RUN=1;SAF=0;SAP=46.4397;SAR=20;SRF=0;SRP=141.985;SRR=64;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:39:32,7:32:1089:7:235:-9.73874,0,-86.5737 0/1:22:13,9:13:454:9:271:-18.0619,0,-34.5698 0/0:15:15,0:15:477:0:0:0,-4.51545,-43.2332 0/1:8:4,4:4:136:4:121:-8.78248,0,-10.1674 dDocent_Contig_7945 38 . A G 192.967 . AB=0.363636;ABP=6.56362;AC=1;AF=0.125;AN=8;AO=12;CIGAR=1M1X7M;DP=140;DPB=137.667;DPRA=1.8;EPP=29.068;EPPR=272.273;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.959677;PAO=0;PQA=0;PQR=0;PRO=0;QA=456;QR=4870;RO=124;RPL=0;RPP=29.068;RPPR=272.273;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=124;SRP=272.273;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:33:30,3,0:30:1180:3,0:102,0:0,-0.48962,-97.0424,-9.0309,-97.9455,-106.144 0|0:68:63,0,4:63:2487:0,4:0,153:0,-18.9649,-223.643,-6.26748,-211.092,-209.888 0|1:22:14,0,8:14:543:0,8:0,303:-20.9953,-25.2097,-69.8272,0,-44.9991,-42.5909 0|0:17:17,0,0:17:660:0,0:0,0:0,-5.11751,-59.7345,-5.11751,-59.7345,-59.7345 dDocent_Contig_7946 12 . G A 256.086 . AB=0.213115;ABP=46.6177;AC=2;AF=0.25;AN=8;AO=13;CIGAR=1X;DP=87;DPB=87;DPRA=2.34615;EPP=31.2394;EPPR=163.699;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=518;QR=2972;RO=74;RPL=0;RPP=31.2394;RPPR=163.699;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=74;SRP=163.699;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:42:32,10:32:1266:10:396:-23.3535,0,-101.566 0/0:21:21,0:21:852:0:0:0,-6.32163,-76.9903 0/1:19:16,3:16:650:3:122:-5.65292,0,-53.1134 0/0:5:5,0:5:204:0:0:0,-1.50515,-18.744 dDocent_Contig_7948 17 . C T 329.288 . AB=0.578947;ABP=4.03889;AC=1;AF=0.125;AN=8;AO=11;CIGAR=1X;DP=51;DPB=51;DPRA=1.78125;EPP=26.8965;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=441;QR=1548;RO=40;RPL=0;RPP=26.8965;RPPR=89.8692;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:8,11:8:312:11:441:-34.3267,0,-22.7176 0/0:13:13,0:13:523:0:0:0,-3.91339,-47.4166 0/0:15:15,0:15:581:0:0:0,-4.51545,-52.629 0/0:4:4,0:4:132:0:0:0,-1.20412,-12.197 dDocent_Contig_7949 43 . A G 2071.94 . AB=0.503497;ABP=3.02549;AC=4;AF=0.5;AN=8;AO=72;CIGAR=1X;DP=143;DPB=143;DPRA=0;EPP=159.356;EPPR=157.185;GTI=0;LEN=1;MEANALT=1;MQM=59.875;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2848;QR=2786;RO=71;RPL=0;RPP=159.356;RPPR=157.185;RPR=72;RUN=1;SAF=72;SAP=159.356;SAR=0;SRF=71;SRP=157.185;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:72:37,35:37:1432:35:1379:-102.69,0,-107.47 0/1:51:22,29:22:882:29:1156:-88.9641,0,-64.3359 0/1:15:8,7:8:320:7:273:-20.4133,0,-24.6522 0/1:5:4,1:4:152:1:40:-2.49053,0,-12.5429 dDocent_Contig_7950 175 . C T 1094.16 . AB=0.606557;ABP=9.02635;AC=3;AF=0.375;AN=8;AO=37;CIGAR=1X;DP=68;DPB=68;DPRA=2.90476;EPP=83.3548;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1468;QR=1212;RO=31;RPL=37;RPP=83.3548;RPPR=70.3259;RPR=0;RUN=1;SAF=0;SAP=83.3548;SAR=37;SRF=0;SRP=70.3259;SRR=31;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:11,12:11:443:12:463:-35.0908,0,-33.3024 0/1:23:3,20:3:104:20:807:-66.024,0,-2.7746 0/1:15:10,5:10:383:5:198:-13.6816,0,-30.3078 0/0:7:7,0:7:282:0:0:0,-2.10721,-25.753 dDocent_Contig_7951 46 . C G 1010.77 . AB=0.264706;ABP=19.3602;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X1M1X;DP=106;DPB=106;DPRA=0;EPP=22.5536;EPPR=139.813;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=341;QR=2498;RO=63;RPL=0;RPP=22.5536;RPPR=139.813;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=63;SRP=139.813;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:51:30,0,21:30:1174:0,21:0,836:-60.2014,-69.2323,-165.744,0,-96.9062,-90.5846 0|1:34:21,9,4:21:844:9,4:341,155:-21.6251,0,-66.8536,-15.2118,-56.8329,-83.5745 0|0:16:9,0,7:9:359:0,7:0,281:-20.8457,-23.555,-53.1193,0,-29.9642,-27.857 0|0:5:3,0,2:3:121:0,2:0,77:-5.80305,-6.70614,-16.6913,0,-10.3771,-9.77505 dDocent_Contig_7952 60 . A G 44.3547 . AB=0.130435;ABP=84.8654;AC=2;AF=0.25;AN=8;AO=11;CIGAR=1X;DP=145;DPB=145;DPRA=0.790698;EPP=26.8965;EPPR=293.988;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.545455;PAIREDR=0.753731;PAO=0;PQA=0;PQR=0;PRO=0;QA=375;QR=4470;RO=134;RPL=11;RPP=26.8965;RPPR=293.988;RPR=0;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=134;SRP=293.988;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:43:43,0:43:1447:0:0:0,-12.9443,-130.523 0/1:57:51,6:51:1675:6:205:-1.62671,0,-133.875 0/0:33:31,2:31:1041:2:66:0,-3.66568,-87.7283 0/1:12:9,3:9:307:3:104:-6.09073,0,-24.3494 dDocent_Contig_7953 15 . T C 6265.66 . AB=0.824268;ABP=221.293;AC=4;AF=0.5;AN=8;AO=197;CIGAR=1X;DP=239;DPB=239;DPRA=0;EPP=430.79;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7835;QR=1688;RO=42;RPL=0;RPP=430.79;RPPR=94.2121;RPR=197;RUN=1;SAF=197;SAP=430.79;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:76:12,64:12:487:64:2566:-208.187,0,-21.3034 0/1:81:12,69:12:478:69:2718:-220.347,0,-18.9865 0/1:45:7,38:7:283:38:1516:-123.129,0,-12.297 0/1:37:11,26:11:440:26:1035:-82.3014,0,-28.8156 dDocent_Contig_7956 19 . C A 360.182 . AB=0.186275;ABP=90.2098;AC=2;AF=0.25;AN=8;AO=25;CIGAR=1X;DP=221;DPB=221;DPRA=0;EPP=57.2971;EPPR=428.619;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.994898;PAO=0;PQA=0;PQR=0;PRO=0;QA=1016;QR=7828;RO=196;RPL=0;RPP=57.2971;RPPR=428.619;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=196;SRP=428.619;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:59:56,3:56:2258:3:123:0,-6.29598,-191.917 0/1:76:60,16:60:2390:16:648:-35.7756,0,-192.375 0/0:60:57,3:57:2259:3:122:0,-6.68931,-192.099 0/1:26:23,3:23:921:3:123:-3.63801,0,-75.3681 dDocent_Contig_7957 107 . N C 463.391 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=15;CIGAR=1X;DP=15;DPB=15;DPRA=0;EPP=35.5824;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=499;QR=0;RO=0;RPL=0;RPP=35.5824;RPPR=0;RPR=15;RUN=1;SAF=0;SAP=35.5824;SAR=15;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:5:0,5:0:0:5:175:-16.0937,-1.50515,0 1/1:7:0,7:0:0:7:243:-22.2088,-2.10721,0 1/1:3:0,3:0:0:3:81:-7.55921,-0.90309,0 ./.:.:.:.:.:.:.:. dDocent_Contig_7958 165 . T C 63.3909 . AB=0.375;ABP=4.09604;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=47;DPB=47;DPRA=0.615385;EPP=9.52472;EPPR=81.9729;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.931818;PAO=0;PQA=0;PQR=0;PRO=0;QA=112;QR=1690;RO=44;RPL=3;RPP=9.52472;RPPR=81.9729;RPR=0;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=98.5551;SRR=44;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:19:19,0:19:742:0:0:0,-5.71957,-67.1087 0/0:10:10,0:10:387:0:0:0,-3.0103,-35.186 0/1:8:5,3:5:201:3:112:-8.03806,0,-16.0627 0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7329 dDocent_Contig_7959 115 . T G 34.4345 . AB=0.333333;ABP=4.45795;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X;DP=32;DPB=32;DPRA=0.692308;EPP=7.35324;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=70;QR=1024;RO=30;RPL=0;RPP=7.35324;RPPR=68.1545;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=68.1545;SRR=30;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:6:4,2:4:138:2:70:-4.84122,0,-10.9542 0/0:9:9,0:9:311:0:0:0,-2.70927,-28.3253 0/0:11:11,0:11:375:0:0:0,-3.31133,-34.0792 0/0:6:6,0:6:200:0:0:0,-1.80618,-18.3269 dDocent_Contig_7960 196 . C A 652.983 . AB=0.350649;ABP=17.9286;AC=3;AF=0.375;AN=8;AO=28;CIGAR=1X;DP=98;DPB=98;DPRA=0;EPP=63.8115;EPPR=155.013;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1070;QR=2643;RO=70;RPL=28;RPP=63.8115;RPPR=155.013;RPR=0;RUN=1;SAF=0;SAP=63.8115;SAR=28;SRF=0;SRP=155.013;SRR=70;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:59:36,23:36:1352:23:875:-61.3069,0,-104.201 0/0:21:20,1:20:768:1:39:0,-2.42507,-65.5514 0/1:11:9,2:9:339:2:78:-4.09214,0,-27.5526 0/1:7:5,2:5:184:2:78:-5.29626,0,-14.809 dDocent_Contig_7961 17 . A G 918.051 . AB=0.278481;ABP=70.3534;AC=3;AF=0.375;AN=8;AO=44;CIGAR=1X3M1X2M4I5M11I5M;DP=158;DPB=201;DPRA=0;EPP=98.5551;EPPR=220.479;GTI=0;LEN=1;MEANALT=1.75;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=1.38778e-17;PAIRED=1;PAIREDR=0.953704;PAO=0;PQA=0;PQR=0;PRO=0;QA=1547;QR=4242;RO=108;RPL=0;RPP=98.5551;RPPR=237.529;RPR=44;RUN=1;SAF=44;SAP=98.5551;SAR=0;SRF=106;SRP=220.479;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:37:30,3,4:30:1176:3,4:82,139:-2.31128,-4.89879,-100.739,0,-90.3471,-95.6073 0|1:51:27,22,0:27:1070:22,0:802,0:-57.5678,0,-81.6667,-65.6956,-88.2894,-153.795 0|1:39:24,15,0:24:944:15,0:518,0:-35.1999,0,-73.5296,-42.4246,-78.045,-120.106 0|1:31:27,4,0:27:1052:4,0:145,0:-4.07324,0,-85.6471,-12.2011,-86.8512,-98.6865 dDocent_Contig_7962 26 . G A 1101.11 . AB=0.558824;ABP=5.05404;AC=4;AF=0.5;AN=8;AO=38;CIGAR=1X;DP=68;DPB=68;DPRA=0;EPP=85.5263;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.605263;PAIREDR=0.866667;PAO=0;PQA=0;PQR=0;PRO=0;QA=1517;QR=1174;RO=30;RPL=0;RPP=85.5263;RPPR=68.1545;RPR=38;RUN=1;SAF=38;SAP=85.5263;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:10,4:10:395:4:159:-10.4775,0,-31.6901 0/1:29:10,19:10:396:19:760:-59.9919,0,-27.268 0/1:9:2,7:2:62:7:281:-22.9529,0,-3.17552 0/1:16:8,8:8:321:8:317:-24.0794,0,-24.4411 dDocent_Contig_7963 34 . T A 90.9781 . AB=0.333333;ABP=5.9056;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X3M1D6M;DP=37;DPB=36.6364;DPRA=0.96;EPP=11.6962;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=154;QR=1292;RO=33;RPL=0;RPP=11.6962;RPPR=74.6689;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:12:8,4:8:320:4:154:-10.6207,0,-25.5559 0|0:15:15,0:15:571:0:0:0,-4.51545,-51.7251 .:.:.:.:.:.:.:. 0|0:10:10,0:10:401:0:0:0,-3.0103,-36.4507 dDocent_Contig_7964 8 . A T 51.2519 . AB=0.104;ABP=173.271;AC=2;AF=0.25;AN=8;AO=13;CIGAR=2X;DP=221;DPB=221;DPRA=1.30208;EPP=31.2394;EPPR=450.334;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=0.769231;PAIREDR=0.791262;PAO=0;PQA=0;PQR=0;PRO=0;QA=501;QR=7832;RO=206;RPL=0;RPP=31.2394;RPPR=450.334;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=206;SRP=450.334;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:72:72,0:72:2753:0:0:0,-21.6742,-247.96 0|1:80:70,8:70:2634:8:310:-4.50967,0,-213.532 0|1:45:40,5:40:1537:5:191:-4.01207,0,-125.057 0|0:24:24,0:24:908:0:0:0,-7.22472,-82.0365 dDocent_Contig_7965 14 . T A 1068.18 . AB=0.0689655;ABP=49.8093;AC=0;AF=0;AN=8;AO=2;CIGAR=3X5M1X1M;DP=110;DPB=109.8;DPRA=0;EPP=7.35324;EPPR=128.956;GTI=0;LEN=1;MEANALT=4;MQM=33;MQMR=60;NS=4;NUMALT=4;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=66;QR=2294;RO=58;RPL=0;RPP=7.35324;RPPR=128.956;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:38:25,2,4,0,7:25:992:2,4,0,7:81,140,0,266:-14.3328,-18.1767,-99.2616,-11.2839,-89.2897,-91.7772,-21.8586,-99.8637,-92.9813,-103.557,0,-78.0505,-71.1678,-81.7416,-79.6344 0|0:29:12,0,2,2,12:12:475:0,2,2,12:0,75,66,470:-35.0807,-38.6931,-77.7974,-32.655,-71.7597,-71.1577,-33.9065,-73.0072,-66.9701,-72.4051,0,-39.1427,-33.105,-34.3565,-35.5304 0|0:31:12,0,0,0,19:12:473:0,0,0,19:0,0,0,740:-57.5972,-61.2095,-100.127,-61.2095,-100.127,-100.127,-61.2095,-100.127,-100.127,-100.127,0,-39.3093,-39.3093,-39.3093,-33.5898 0|0:12:9,0,0,0,3:9:354:0,0,0,3:0,0,0,116:-7.20518,-9.91445,-39.0378,-9.91445,-39.0378,-39.0378,-9.91445,-39.0378,-39.0378,-39.0378,0,-29.5114,-29.5114,-29.5114,-28.6083 dDocent_Contig_7966 74 . T C 346.954 . AB=0.1875;ABP=98.0122;AC=3;AF=0.375;AN=8;AO=21;CIGAR=1X;DP=115;DPB=115;DPRA=12.4444;EPP=48.6112;EPPR=204.957;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=806;QR=3578;RO=93;RPL=21;RPP=48.6112;RPPR=204.957;RPR=0;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=93;SRP=204.957;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:60:51,9:51:1961:9:345:-13.3447,0,-158.655 0/1:33:27,6:27:1053:6:234:-11.4966,0,-85.1367 0/1:19:12,6:12:466:6:227:-15.2519,0,-36.7684 0/0:3:3,0:3:98:0:0:0,-0.90309,-9.14096 dDocent_Contig_7967 209 . N G 74.9833 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=79;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:79:-7.49724,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_7968 24 . T A 1058.47 . AB=0.318182;ABP=40.9124;AC=4;AF=0.5;AN=8;AO=42;CIGAR=1M2I1M1X;DP=132;DPB=160;DPRA=0;EPP=94.2121;EPPR=198.443;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.166667;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1684;QR=3583;RO=90;RPL=0;RPP=94.2121;RPPR=198.443;RPR=42;RUN=1;SAF=42;SAP=94.2121;SAR=0;SRF=90;SRP=198.443;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:37:24,13:24:958:13:522:-36.1886,0,-75.3828 0|1:62:45,17:45:1802:17:681:-42.9577,0,-143.732 0|1:29:19,10:19:742:10:403:-27.9004,0,-58.3696 0|1:4:2,2:2:81:2:78:-6.19866,0,-6.48161 dDocent_Contig_7970 9 . G C 1433.46 . AB=0.478723;ABP=3.37991;AC=5;AF=0.625;AN=8;AO=45;CIGAR=1X1M;DP=94;DPB=94;DPRA=0;EPP=100.727;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1.75;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1738;QR=1327;RO=35;RPL=0;RPP=100.727;RPPR=79.0118;RPR=45;RUN=1;SAF=45;SAP=100.727;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:25:3,7,15:3:97:7,15:274,582:-61.6905,-40.0627,-45.7665,-14.776,0,-18.062 0|1:34:9,4,21:9:348:4,21:159,807:-63.5276,-53.1437,-80.5247,0,-15.4826,-22.2554 0|1:25:18,0,7:18:687:0,7:0,271:-17.2307,-22.6492,-79.006,0,-56.742,-54.6348 0|1:10:5,3,2:5:195:3,2:119,78:-8.29485,0,-15.1261,-3.39089,-9.61747,-18.8139 dDocent_Contig_7972 9 . G A 76.947 . AB=0.208333;ABP=20.744;AC=2;AF=0.25;AN=8;AO=5;CIGAR=1X;DP=48;DPB=48;DPRA=1;EPP=13.8677;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.976744;PAO=0;PQA=0;PQR=0;PRO=0;QA=195;QR=1654;RO=43;RPL=0;RPP=13.8677;RPPR=96.3836;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:17:17,0:17:650:0:0:0,-5.11751,-58.8354 0/1:13:11,2:11:426:2:78:-3.49008,0,-34.7813 0/1:11:8,3:8:305:3:117:-7.59905,0,-24.4985 0/0:7:7,0:7:273:0:0:0,-2.10721,-24.938 dDocent_Contig_7974 16 . G A 342.832 . AB=0.235294;ABP=44.396;AC=2;AF=0.25;AN=8;AO=16;CIGAR=1X;DP=107;DPB=107;DPRA=1.74359;EPP=37.7539;EPPR=200.614;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.978022;PAO=0;PQA=0;PQR=0;PRO=0;QA=638;QR=3604;RO=91;RPL=0;RPP=37.7539;RPPR=200.614;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=91;SRP=200.614;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:49:36,13:36:1443:13:519:-32.3056,0,-115.368 0/0:23:23,0:23:913:0:0:0,-6.92369,-82.4758 0/1:19:16,3:16:602:3:119:-5.37544,0,-48.7725 0/0:16:16,0:16:646:0:0:0,-4.81648,-58.4745 dDocent_Contig_7975 29 . A T 1628.92 . AB=0.393333;ABP=17.8342;AC=3;AF=0.375;AN=8;AO=59;CIGAR=1X;DP=161;DPB=161;DPRA=4.54545;EPP=131.127;EPPR=224.5;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=0.990196;PAO=0;PQA=0;PQR=0;PRO=0;QA=2360;QR=4033;RO=102;RPL=0;RPP=131.127;RPPR=224.5;RPR=59;RUN=1;SAF=59;SAP=131.127;SAR=0;SRF=102;SRP=224.5;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:68:19,49:19:753:49:1959:-156.041,0,-47.6256 0/1:52:45,7:45:1770:7:282:-10.0996,0,-143.87 0/1:30:27,3:27:1068:3:119:-2.06411,0,-87.3825 0/0:11:11,0:11:442:0:0:0,-3.31133,-40.1362 dDocent_Contig_7976 10 . G A 554.616 . AB=0.4;ABP=3.44459;AC=8;AF=1;AN=8;AO=2;CIGAR=1X3M6X3M1X;DP=18;DPB=18;DPRA=1.15385;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=0;NS=4;NUMALT=2;ODDS=1.73472e-18;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=80;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:2:0,2,0:0:0:2,0:68,0:-6.45158,-0.60206,0,-6.45158,-0.60206,-6.45158 1|1:8:0,8,0:0:0:8,0:298,0:-27.1673,-2.40824,0,-27.1673,-2.40824,-27.1673 1|1:5:0,3,2:0:0:3,2:115,80:-16.4177,-6.98973,-6.08664,-9.8209,0,-9.21884 1|1:3:0,2,0:0:0:2,0:76,0:-6.82186,-0.60206,0,-6.82186,-0.60206,-6.82186 dDocent_Contig_7977 39 . C G 241.353 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=1;CIGAR=2X2M;DP=38;DPB=38;DPRA=1.07143;EPP=5.18177;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQM=7;MQMR=0;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=7;QR=0;RO=0;RPL=0;RPP=5.18177;RPPR=0;RPR=1;RUN=1;SAF=1;SAP=5.18177;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:12:0,12,0:0:0:12,0:466,0:-7.62733,-3.61236,0,-7.62733,-3.61236,-7.62733 1|1:10:0,10,0:0:0:10,0:382,0:-6.36591,-3.0103,0,-6.36591,-3.0103,-6.36591 1|1:6:0,6,0:0:0:6,0:229,0:-3.84844,-1.80618,0,-3.84844,-1.80618,-3.84844 1|1:10:0,9,1:0:0:9,1:358,7:-5.69145,-2.70927,0,-5.59488,-2.56569,-5.29385 dDocent_Contig_7980 174 . T G 333.635 . AB=0;ABP=0;AC=2;AF=0.25;AN=8;AO=9;CIGAR=1X;DP=82;DPB=82;DPRA=0.369863;EPP=22.5536;EPPR=161.528;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=360;QR=2877;RO=73;RPL=9;RPP=22.5536;RPPR=161.528;RPR=0;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=161.528;SRR=73;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:9:0,9:0:0:9:360:-32.7614,-2.70927,0 0/0:33:33,0:33:1305:0:0:0,-9.93399,-117.702 0/0:6:6,0:6:246:0:0:0,-1.80618,-22.5201 0/0:34:34,0:34:1326:0:0:0,-10.235,-119.602 dDocent_Contig_7983 20 . C T 150.056 . AB=0.315789;ABP=8.61041;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=37;DPB=37;DPRA=2.11111;EPP=16.0391;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=243;QR=1214;RO=31;RPL=0;RPP=16.0391;RPPR=70.3259;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:13,6:13:531:6:243:-16.5284,0,-42.4168 0/0:13:13,0:13:484:0:0:0,-3.91339,-43.8914 0/0:5:5,0:5:199:0:0:0,-1.50515,-18.2884 ./.:.:.:.:.:.:.:. dDocent_Contig_7984 71 . A T 63.4415 . AB=0.173913;ABP=24.253;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=62;DPB=62;DPRA=1.76923;EPP=11.6962;EPPR=128.956;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=162;QR=2233;RO=58;RPL=4;RPP=11.6962;RPPR=128.956;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:24:24,0:24:910:0:0:0,-7.22472,-82.2052 0/0:11:11,0:11:442:0:0:0,-3.31133,-40.136 0/1:23:19,4:19:725:4:162:-8.04306,0,-58.6504 0/0:4:4,0:4:156:0:0:0,-1.20412,-14.4157 dDocent_Contig_7985 31 . T C 479.952 . AB=0.25;ABP=48.6112;AC=4;AF=0.5;AN=8;AO=21;CIGAR=1X2M;DP=103;DPB=103;DPRA=0;EPP=48.6112;EPPR=159.356;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=0.986111;PAO=0;PQA=0;PQR=0;PRO=0;QA=843;QR=2873;RO=72;RPL=0;RPP=48.6112;RPPR=159.356;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=72;SRP=159.356;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:41:25,3,1,10:25:1001:3,1,10:122,40,405:-25.8717,-23.3336,-104.892,-30.1026,-102.5,-112.262,0,-72.398,-79.1668,-79.4516 0|1:27:20,0,2,5:20:800:0,2,5:0,80,198:-10.2721,-16.2927,-82.194,-9.70159,-75.604,-75.0019,0,-65.8992,-59.3092,-64.394 0|1:16:10,0,0,6:10:400:0,0,6:0,0,240:-17.159,-20.1693,-53.1184,-20.1693,-53.1184,-53.1184,0,-33.3487,-33.3487,-31.5425 0|1:19:17,0,2,0:17:672:0,2,0:0,81,0:-1.96616,-7.08367,-62.3723,0,-55.6921,-55.0901,-7.08367,-62.3723,-55.6921,-62.3723 dDocent_Contig_7986 15 . T C 276.543 . AB=0.168317;ABP=99.5226;AC=3;AF=0.375;AN=8;AO=19;CIGAR=1X;DP=137;DPB=137;DPRA=0;EPP=44.2683;EPPR=259.244;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=754;QR=4715;RO=118;RPL=0;RPP=44.2683;RPPR=259.244;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=118;SRP=259.244;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:23,3:23:916:3:120:-3.36053,0,-74.9175 0/1:53:41,12:41:1647:12:481:-27.6856,0,-132.504 0/0:36:34,2:34:1341:2:82:0,-3.0574,-113.162 0/1:22:20,2:20:811:2:71:-0.116767,0,-66.6832 dDocent_Contig_7987 43 . T C 37.3127 . AB=0.192308;ABP=24.391;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=94;DPB=94;DPRA=1.14706;EPP=3.44459;EPPR=196.271;GTI=0;LEN=1;MEANALT=1;MQM=39.8;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=0.6;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=191;QR=3586;RO=89;RPL=2;RPP=3.44459;RPPR=196.271;RPR=3;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=89;SRP=196.271;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:21,5:21:850:5:191:-5.12912,0,-68.9846 0/0:27:27,0:27:1093:0:0:0,-8.12781,-98.6552 0/0:35:35,0:35:1398:0:0:0,-10.536,-126.07 0/0:6:6,0:6:245:0:0:0,-1.80618,-22.4295 dDocent_Contig_7988 12 . T A 133.693 . AB=0.416667;ABP=3.73412;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=68;DPB=68;DPRA=0.642857;EPP=13.8677;EPPR=139.813;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=200;QR=2493;RO=63;RPL=0;RPP=13.8677;RPPR=139.813;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=63;SRP=139.813;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:7,5:7:283:5:200:-14.7672,0,-22.2306 0/0:37:37,0:37:1467:0:0:0,-11.1381,-132.28 0/0:13:13,0:13:510:0:0:0,-3.91339,-46.244 0/0:6:6,0:6:233:0:0:0,-1.80618,-21.3387 dDocent_Contig_7989 30 . T C 1977.53 . AB=0.432099;ABP=9.49791;AC=4;AF=0.5;AN=8;AO=70;CIGAR=1X;DP=162;DPB=162;DPRA=0;EPP=155.013;EPPR=202.786;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.98913;PAO=0;PQA=0;PQR=0;PRO=0;QA=2807;QR=3637;RO=92;RPL=0;RPP=155.013;RPPR=202.786;RPR=70;RUN=1;SAF=70;SAP=155.013;SAR=0;SRF=92;SRP=202.786;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:53:24,29:24:941:29:1168:-89.4396,0,-69.0389 0/1:45:29,16:29:1159:16:644:-44.7469,0,-91.048 0/1:51:30,21:30:1191:21:842:-60.7394,0,-92.1144 0/1:13:9,4:9:346:4:153:-10.2246,0,-27.5782 dDocent_Contig_7991 36 . A G 120.766 . AB=0.21875;ABP=24.9965;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=62;DPB=62;DPRA=3.2;EPP=18.2106;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=253;QR=2115;RO=55;RPL=0;RPP=18.2106;RPPR=122.441;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:32:25,7:25:961:7:253:-13.4744,0,-77.1605 0/0:20:20,0:20:782:0:0:0,-6.0206,-70.704 0/0:3:3,0:3:102:0:0:0,-0.90309,-9.51412 0/0:7:7,0:7:270:0:0:0,-2.10721,-24.664 dDocent_Contig_7992 43 . T A 78.6735 . AB=0.5;ABP=3.0103;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=159;DPB=159;DPRA=0.21374;EPP=11.6962;EPPR=339.589;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=163;QR=6174;RO=155;RPL=0;RPP=11.6962;RPPR=339.589;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=155;SRP=339.589;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:48:48,0:48:1891:0:0:0,-14.4494,-170.397 0/0:83:83,0:83:3332:0:0:0,-24.9855,-299.926 0/0:22:21,1:21:835:1:41:0,-2.52809,-71.3625 0/1:6:3,3:3:116:3:122:-9.56631,0,-9.01084 dDocent_Contig_7993 17 . T A 3973.62 . AB=0.768707;ABP=95.2019;AC=4;AF=0.5;AN=8;AO=124;CIGAR=1X;DP=169;DPB=169;DPRA=4.78788;EPP=272.273;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4937;QR=1795;RO=45;RPL=0;RPP=272.273;RPPR=100.727;RPR=124;RUN=1;SAF=124;SAP=272.273;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:73:11,62:11:443:62:2474:-200.827,0,-18.2501 0/1:74:23,51:23:913:51:2026:-160.248,0,-60.1961 1/1:11:0,11:0:0:11:437:-39.6843,-3.31133,0 0/0:11:11,0:11:439:0:0:0,-3.31133,-39.8636 dDocent_Contig_7994 35 . A G 1763.55 . AB=0.276923;ABP=115.392;AC=4;AF=0.5;AN=8;AO=72;CIGAR=1X;DP=260;DPB=260;DPRA=0;EPP=159.356;EPPR=411.247;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2897;QR=7493;RO=188;RPL=0;RPP=159.356;RPPR=411.247;RPR=72;RUN=1;SAF=72;SAP=159.356;SAR=0;SRF=188;SRP=411.247;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:95:69,26:69:2772:26:1043:-65.5615,0,-220.989 0/1:108:72,36:72:2883:36:1457:-98.8627,0,-227.063 0/1:32:25,7:25:969:7:277:-15.6652,0,-77.8715 0/1:25:22,3:22:869:3:120:-3.66156,0,-70.9943 dDocent_Contig_7996 12 . C A 4877.93 . AB=0.586957;ABP=21.1374;AC=4;AF=0.5;AN=8;AO=162;CIGAR=1X;DP=276;DPB=276;DPRA=0;EPP=354.789;EPPR=250.558;GTI=0;LEN=1;MEANALT=1;MQM=59.716;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6424;QR=4485;RO=114;RPL=0;RPP=354.789;RPPR=250.558;RPR=162;RUN=1;SAF=162;SAP=354.789;SAR=0;SRF=114;SRP=250.558;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:126:60,66:60:2348:66:2616:-196.803,0,-173.553 0/1:85:16,69:16:632:69:2730:-220.244,0,-31.6275 0/1:40:23,17:23:910:17:678:-49.311,0,-70.1636 0/1:25:15,10:15:595:10:400:-28.8341,0,-46.3629 dDocent_Contig_7998 31 . T A 1068.62 . AB=0.428571;ABP=7.04303;AC=4;AF=0.5;AN=8;AO=39;CIGAR=1X;DP=91;DPB=91;DPRA=0;EPP=87.6977;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1558;QR=2082;RO=52;RPL=0;RPP=87.6977;RPPR=115.927;RPR=39;RUN=1;SAF=39;SAP=87.6977;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:10,15:10:392:15:598:-46.6306,0,-28.1071 0/1:8:4,4:4:163:4:157:-12.0989,0,-12.6502 0/1:42:26,16:26:1049:16:642:-45.472,0,-82.0561 0/1:16:12,4:12:478:4:161:-10.0588,0,-38.5534 dDocent_Contig_7999 19 . T C 2717.46 . AB=0.0789474;ABP=61.5258;AC=0;AF=0;AN=8;AO=3;CIGAR=1X2M1X2M1X;DP=154;DPB=154;DPRA=0;EPP=9.52472;EPPR=128.956;GTI=0;LEN=1;MEANALT=2;MQM=44;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0.982759;PAO=0;PQA=0;PQR=0;PRO=0;QA=111;QR=2303;RO=58;RPL=0;RPP=9.52472;RPPR=128.956;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:38:14,3,21:14:558:3,21:111,825:-63.6633,-59.0571,-104.108,0,-37.1652,-39.6615 0|0:44:21,0,23:21:832:0,23:0,923:-70.1301,-76.4517,-144.926,0,-68.8728,-61.9491 0|0:32:5,0,27:5:200:0,27:0,1035:-83.8075,-85.3126,-101.79,0,-16.8746,-8.74675 0|0:40:18,0,21:18:713:0,21:0,812:-61.543,-66.9616,-125.655,0,-58.9637,-52.642 dDocent_Contig_8000 32 . G A 163.687 . AB=0.228571;ABP=25.4075;AC=2;AF=0.25;AN=8;AO=9;CIGAR=1X;DP=80;DPB=80;DPRA=0.619048;EPP=22.5536;EPPR=157.185;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=356;QR=2834;RO=71;RPL=0;RPP=22.5536;RPPR=157.185;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=71;SRP=157.185;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:28:28,0:28:1118:0:0:0,-8.42884,-100.907 0/1:22:20,2:20:800:2:78:-0.780641,0,-65.6956 0/0:17:16,1:16:631:1:38:0,-1.32024,-53.3189 0/1:13:7,6:7:285:6:240:-18.0611,0,-22.111 dDocent_Contig_8001 204 . C G 36.3262 . AB=0.4;ABP=3.44459;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X;DP=38;DPB=38;DPRA=0.454545;EPP=7.35324;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=72;QR=1280;RO=36;RPL=2;RPP=7.35324;RPPR=81.1833;RPR=0;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=81.1833;SRR=36;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3773 0/0:12:12,0:12:416:0:0:0,-3.61236,-37.7675 0/0:11:11,0:11:401:0:0:0,-3.31133,-36.435 0/1:5:3,2:3:107:2:72:-5.33149,0,-8.47693 dDocent_Contig_8002 11 . G A 425.101 . AB=0.0659341;ABP=151.935;AC=4;AF=0.5;AN=8;AO=6;CIGAR=1X12M;DP=92;DPB=90.1538;DPRA=30.3333;EPP=16.0391;EPPR=98.5551;GTI=0;LEN=1;MEANALT=4.33333;MQM=39;MQMR=60;NS=4;NUMALT=4;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=227;QR=1720;RO=44;RPL=0;RPP=16.0391;RPPR=98.5551;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:43:18,8,0,11,2:18:694:8,0,11,2:320,0,446,82:-31.391,-10.4936,-65.0877,-36.8095,-67.4959,-93.8022,0,-30.7,-57.0124,-53.7011,-30.487,-61.174,-87.4808,-50.6901,-86.8787 0|1:32:19,6,2,2,2:19:749:6,2,2,2:231,19,80,66:-12.108,0,-59.9203,-17.259,-61.139,-78.3106,-11.22,-55.1327,-72.3208,-72.3098,-13.032,-56.9349,-74.1218,-68.1195,-74.1103 0|1:16:7,0,6,0,2:7:277:0,6,0,2:0,57,0,79:-4.10224,-6.20945,-29.1086,-4.56319,-27.3918,-25.5856,-6.20945,-29.1086,-27.3918,-29.1086,0,-22.9442,-21.245,-22.9442,-22.3422 1|1:1:0,0,0,0,0:0:0:0,0,0,0:0,0,0,0:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 dDocent_Contig_8003 75 . T C 123.332 . AB=0.181818;ABP=22.3561;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X3M1X;DP=79;DPB=79;DPRA=0.811594;EPP=16.0391;EPPR=124.613;GTI=0;LEN=1;MEANALT=2.66667;MQM=52.8333;MQMR=59.9286;NS=4;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=0.982143;PAO=0;PQA=0;PQR=0;PRO=0;QA=205;QR=2015;RO=56;RPL=6;RPP=16.0391;RPPR=124.613;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:23:17,0,6,0,0:17:616:0,6,0,0:0,36,0,0:0,-5.11751,-55.651,-4.95878,-55.6132,-53.807,-5.11751,-55.651,-55.6132,-55.651,-5.11751,-55.651,-55.6132,-55.651,-55.651 0|0:34:31,2,1,0,0:31:1101:2,1,0,0:68,35,0,0:0,-3.82409,-92.9397,-6.5105,-90.7229,-95.9335,-9.33193,-93.5418,-96.2345,-99.0534,-9.33193,-93.5418,-96.2345,-99.0534,-99.0534 0|0:16:7,1,3,3,2:7:260:1,3,3,2:35,47,117,71:-7.55904,-6.81631,-27.8334,-7.01394,-25.4509,-27.3888,0,-18.5007,-18.6687,-20.4435,-3.86326,-22.3447,-22.5097,-15.5538,-24.5875 0|1:6:1,3,2,0,0:1:38:3,2,0,0:102,12,0,0:-8.12375,0,-2.32809,-8.50499,-3.41951,-11.0297,-8.42478,-3.23118,-11.6317,-11.5683,-8.42478,-3.23118,-11.6317,-11.5683,-11.5683 dDocent_Contig_8004 13 . C A 559.201 . AB=0.177419;ABP=171.124;AC=4;AF=0.5;AN=8;AO=33;CIGAR=1X1M1X;DP=186;DPB=186;DPRA=0;EPP=74.6689;EPPR=326.56;GTI=0;LEN=1;MEANALT=1.5;MQM=59.8182;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.969697;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1305;QR=5874;RO=149;RPL=0;RPP=74.6689;RPPR=326.56;RPR=33;RUN=1;SAF=33;SAP=74.6689;SAR=0;SRF=149;SRP=326.56;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:65:53,12,0:53:2123:12,0:479,0:-23.8913,0,-171.676,-39.8459,-175.289,-214.736 0|1:72:61,11,0:61:2392:11,0:423,0:-16.7447,0,-193.771,-35.1076,-197.082,-231.804 0|1:23:15,5,3:15:592:5,3:200,123:-11.9532,0,-47.193,-6.31269,-38.5434,-54.1164 0|1:26:20,5,0:20:767:5,0:203,0:-10.7288,0,-61.4341,-16.7494,-62.9393,-79.6717 dDocent_Contig_8005 10 . A T 290.611 . AB=0.458333;ABP=3.37221;AC=1;AF=0.125;AN=8;AO=11;CIGAR=2X;DP=40;DPB=40;DPRA=4.5;EPP=26.8965;EPPR=63.8115;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=416;QR=1117;RO=28;RPL=0;RPP=26.8965;RPPR=63.8115;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:24:12,11:12:470:11:416:-30.4588,0,-35.3177 0|0:5:5,0:5:201:0:0:0,-1.50515,-18.4711 0|0:3:3,0:3:121:0:0:0,-0.90309,-11.2802 0|0:8:8,0:8:325:0:0:0,-2.40824,-29.6194 dDocent_Contig_8006 12 . T C 856.377 . AB=0.324074;ABP=32.0437;AC=4;AF=0.5;AN=8;AO=35;CIGAR=1X1M1X;DP=108;DPB=108;DPRA=0;EPP=79.0118;EPPR=161.528;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.828571;PAIREDR=0.917808;PAO=0;PQA=0;PQR=0;PRO=0;QA=1379;QR=2895;RO=73;RPL=0;RPP=79.0118;RPPR=161.528;RPR=35;RUN=1;SAF=35;SAP=79.0118;SAR=0;SRF=73;SRP=161.528;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:46:28,18:28:1118:18:707:-50.1095,0,-87.0586 0|1:28:20,8:20:790:8:322:-20.9199,0,-62.9883 0|1:21:16,5:16:626:5:202:-12.2404,0,-50.3537 0|1:13:9,4:9:361:4:148:-9.76578,0,-28.9373 dDocent_Contig_8007 9 . G A 9630.4 . AB=0.238395;ABP=1040.3;AC=4;AF=0.5;AN=8;AO=416;CIGAR=1X1M;DP=1745;DPB=1745;DPRA=0;EPP=906.343;EPPR=2317.8;GTI=0;LEN=1;MEANALT=4.5;MQM=58.5361;MQMR=53.0103;NS=4;NUMALT=2;ODDS=0;PAIRED=0.930288;PAIREDR=0.772983;PAO=0;PQA=0;PQR=0;PRO=0;QA=15870;QR=41421;RO=1066;RPL=0;RPP=906.343;RPPR=2317.8;RPR=416;RUN=1;SAF=416;SAP=906.343;SAR=0;SRF=1066;SRP=2317.8;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:683:417,88,160:417:16169:88,160:3442,6049:-366.059,-208.584,-1428.86,0,-963.755,-1198.59 0|1:572:349,81,137:349:13576:81,137:3149,5261:-321.761,-168.05,-1190.14,0,-787.693,-1005.22 0|1:364:211,47,97:211:8213:47,97:1799,3722:-240.679,-156.572,-788.672,0,-498.63,-617.054 0|1:126:89,15,22:89:3463:15,22:583,838:-41.9396,-20.8226,-283.612,0,-219.389,-260.675 dDocent_Contig_8008 193 . C T 456.659 . AB=0.382979;ABP=8.60069;AC=3;AF=0.375;AN=8;AO=18;CIGAR=1X;DP=59;DPB=59;DPRA=1.30556;EPP=42.0968;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=712;QR=1656;RO=41;RPL=18;RPP=42.0968;RPPR=92.0407;RPR=0;RUN=1;SAF=0;SAP=42.0968;SAR=18;SRF=0;SRP=92.0407;SRR=41;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:12:12,0:12:487:0:0:0,-3.61236,-44.1811 0/1:16:12,4:12:478:4:163:-10.2419,0,-38.5523 0/1:26:14,12:14:569:12:467:-34.5474,0,-43.7246 0/1:5:3,2:3:122:2:82:-6.27453,0,-9.86734 dDocent_Contig_8009 13 . G A 2786.22 . AB=0.57764;ABP=11.4399;AC=4;AF=0.5;AN=8;AO=93;CIGAR=1X;DP=161;DPB=161;DPRA=0;EPP=204.957;EPPR=150.67;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3703;QR=2524;RO=68;RPL=0;RPP=204.957;RPPR=150.67;RPR=93;RUN=1;SAF=93;SAP=204.957;SAR=0;SRF=68;SRP=150.67;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:47:31,16:31:1122:16:639:-43.6959,0,-87.1044 0/1:55:21,34:21:816:34:1368:-106.82,0,-57.1933 0/1:39:10,29:10:359:29:1137:-90.8752,0,-20.8922 0/1:20:6,14:6:227:14:559:-44.6295,0,-14.768 dDocent_Contig_8010 38 . A G 220.499 . AB=0.421053;ABP=4.03889;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=66;DPB=66;DPRA=1.21277;EPP=20.3821;EPPR=128.956;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=320;QR=2304;RO=58;RPL=0;RPP=20.3821;RPPR=128.956;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:11,8:11:444:8:320:-23.4476,0,-34.5962 0/0:18:18,0:18:705:0:0:0,-5.41854,-63.7694 0/0:27:27,0:27:1073:0:0:0,-8.12781,-96.8601 0/0:2:2,0:2:82:0:0:0,-0.60206,-7.77968 dDocent_Contig_8012 106 . N G 77.6952 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=3;CIGAR=2X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=31;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=91;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. 1|1:2:0,2:0:0:2:58:-4.19329,-0.60206,0 1|1:1:0,1:0:0:1:33:-3.27344,-0.30103,0 .:.:.:.:.:.:.:. dDocent_Contig_8013 39 . A G 520.446 . AB=0.258427;ABP=48.1232;AC=2;AF=0.25;AN=8;AO=23;CIGAR=1X;DP=146;DPB=146;DPRA=1.5614;EPP=52.9542;EPPR=261.486;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.98374;PAO=0;PQA=0;PQR=0;PRO=0;QA=906;QR=4834;RO=123;RPL=0;RPP=52.9542;RPPR=253.012;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=122;SRP=261.486;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:42:42,0:42:1661:0:0:0,-12.6433,-149.723 0/1:50:35,15:35:1375:15:586:-38.0174,0,-108.959 0/1:39:31,8:31:1216:8:320:-17.4251,0,-97.9753 0/0:15:15,0:15:582:0:0:0,-4.51545,-52.7145 dDocent_Contig_8014 14 . C T 131.708 . AB=0.15493;ABP=76.4428;AC=2;AF=0.25;AN=8;AO=11;CIGAR=1X;DP=109;DPB=109;DPRA=1.86842;EPP=26.8965;EPPR=215.815;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.795918;PAO=0;PQA=0;PQR=0;PRO=0;QA=415;QR=3777;RO=98;RPL=0;RPP=26.8965;RPPR=215.815;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=98;SRP=215.815;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:13:13,0:13:479:0:0:0,-3.91339,-43.4374 0/1:31:24,7:24:958:7:264:-14.7884,0,-77.188 0/1:40:36,4:36:1391:4:151:-1.91628,0,-113.407 0/0:25:25,0:25:949:0:0:0,-7.52575,-85.6943 dDocent_Contig_8015 7 . T A 377.17 . AB=0.311377;ABP=54.6185;AC=4;AF=0.5;AN=8;AO=52;CIGAR=2X;DP=167;DPB=167;DPRA=0;EPP=115.927;EPPR=252.73;GTI=0;LEN=1;MEANALT=1;MQM=20.3077;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1987;QR=4386;RO=115;RPL=0;RPP=115.927;RPPR=252.73;RPR=52;RUN=1;SAF=52;SAP=115.927;SAR=0;SRF=115;SRP=252.73;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:30:20,10:20:742:10:387:-10.0123,0,-58.0699 0|1:35:23,12:23:889:12:462:-9.01825,0,-69.7936 0|1:56:39,17:39:1497:17:655:-15.365,0,-118.148 0|1:46:33,13:33:1258:13:483:-10.7194,0,-99.6647 dDocent_Contig_8016 8 . A G 74.9536 . AB=0.166667;ABP=31.9633;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=91;DPB=91;DPRA=1.47541;EPP=13.8677;EPPR=189.757;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=0.906977;PAO=0;PQA=0;PQR=0;PRO=0;QA=195;QR=3278;RO=86;RPL=0;RPP=13.8677;RPPR=189.757;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=86;SRP=189.757;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:25,5:25:962:5:195:-8.8933,0,-77.8622 0/0:23:23,0:23:889:0:0:0,-6.92369,-80.3293 0/0:17:17,0:17:615:0:0:0,-5.11751,-55.6736 0/0:21:21,0:21:812:0:0:0,-6.32163,-73.4052 dDocent_Contig_8018 180 . G A 207.505 . AB=0.421053;ABP=4.03889;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X;DP=47;DPB=47;DPRA=3.7;EPP=22.5536;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=348;QR=1427;RO=38;RPL=9;RPP=22.5536;RPPR=85.5263;RPR=0;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=85.5263;SRR=38;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:18:17,1:17:631:1:39:0,-1.52198,-53.219 0/0:8:8,0:8:316:0:0:0,-2.40824,-28.8049 0/1:19:11,8:11:402:8:309:-22.4491,0,-30.7919 0/0:2:2,0:2:78:0:0:0,-0.60206,-7.4033 dDocent_Contig_8019 44 . A C 1902.08 . AB=0.554622;ABP=6.09416;AC=4;AF=0.5;AN=8;AO=66;CIGAR=1X;DP=119;DPB=119;DPRA=0;EPP=146.327;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2579;QR=2100;RO=53;RPL=0;RPP=146.327;RPPR=118.098;RPR=66;RUN=1;SAF=66;SAP=146.327;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:55:31,24:31:1220:24:944:-68.7033,0,-93.5179 0/1:35:11,24:11:433:24:920:-72.5662,0,-28.7861 0/1:18:7,11:7:286:11:438:-34.3519,0,-20.6963 0/1:11:4,7:4:161:7:277:-21.985,0,-11.5642 dDocent_Contig_8020 26 . C G 2721.41 . AB=0.415254;ABP=17.7321;AC=4;AF=0.5;AN=8;AO=98;CIGAR=1X;DP=236;DPB=236;DPRA=0;EPP=215.815;EPPR=302.673;GTI=0;LEN=1;MEANALT=1;MQM=59.8163;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=0.985507;PAO=0;PQA=0;PQR=0;PRO=0;QA=3883;QR=5163;RO=138;RPL=0;RPP=215.815;RPPR=302.673;RPR=98;RUN=1;SAF=98;SAP=215.815;SAR=0;SRF=138;SRP=302.673;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:77:36,41:36:1315:41:1649:-125.39,0,-95.4568 0/1:43:19,24:19:728:24:958:-73.5793,0,-52.9022 0/1:66:46,20:46:1742:20:776:-50.2828,0,-137.161 0/1:50:37,13:37:1378:13:500:-30.286,0,-109.246 dDocent_Contig_8021 121 . T C 261.776 . AB=0.225806;ABP=43.4978;AC=1;AF=0.125;AN=8;AO=14;CIGAR=1X;DP=149;DPB=149;DPRA=2.13793;EPP=33.4109;EPPR=296.159;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=510;QR=4741;RO=135;RPL=0;RPP=33.4109;RPPR=296.159;RPR=14;RUN=1;SAF=0;SAP=33.4109;SAR=14;SRF=0;SRP=296.159;SRR=135;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:62:48,14:48:1709:14:510:-27.5755,0,-135.423 0/0:24:24,0:24:852:0:0:0,-7.22472,-76.9941 0/0:37:37,0:37:1301:0:0:0,-11.1381,-117.383 0/0:26:26,0:26:879:0:0:0,-7.82678,-79.4114 dDocent_Contig_8023 25 . C T 112.609 . AB=0.155556;ABP=49.3833;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=117;DPB=117;DPRA=1.875;EPP=18.2106;EPPR=239.701;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=287;QR=4362;RO=109;RPL=0;RPP=18.2106;RPPR=239.701;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=109;SRP=239.701;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:45:38,7:38:1516:7:287:-12.6589,0,-123.13 0/0:37:37,0:37:1499:0:0:0,-11.1381,-135.147 0/0:21:20,0:20:784:0:0:0,-6.0206,-70.7647 0/0:14:14,0:14:563:0:0:0,-4.21442,-51.0126 dDocent_Contig_8025 175 . G T 240.048 . AB=0.28;ABP=24.0302;AC=3;AF=0.375;AN=8;AO=14;CIGAR=1X;DP=65;DPB=65;DPRA=1.11111;EPP=33.4109;EPPR=25.534;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=482;QR=1840;RO=51;RPL=0;RPP=33.4109;RPPR=25.534;RPR=14;RUN=1;SAF=0;SAP=33.4109;SAR=14;SRF=0;SRP=113.755;SRR=51;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:15:15,0:15:522:0:0:0,-4.51545,-47.307 0/1:24:20,4:20:714:4:138:-5.53573,0,-57.3513 0/1:22:13,9:13:489:9:309:-21.5205,0,-37.7272 0/1:4:3,1:3:115:1:35:-2.29451,0,-9.51966 dDocent_Contig_8027 9 . C A 952.526 . AB=0.514706;ABP=3.13803;AC=4;AF=0.5;AN=8;AO=35;CIGAR=1X;DP=68;DPB=68;DPRA=0;EPP=79.0118;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.971429;PAIREDR=0.969697;PAO=0;PQA=0;PQR=0;PRO=0;QA=1352;QR=1280;RO=33;RPL=0;RPP=79.0118;RPPR=74.6689;RPR=35;RUN=1;SAF=35;SAP=79.0118;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:12,6:12:468:6:231:-15.7394,0,-37.054 0/1:15:10,5:10:384:5:192:-13.1346,0,-30.4003 0/1:21:8,13:8:312:13:505:-39.4774,0,-22.1233 0/1:14:3,11:3:116:11:424:-34.2992,0,-6.60328 dDocent_Contig_8029 93 . G A 176.205 . AB=0.240741;ABP=34.5369;AC=3;AF=0.375;AN=8;AO=13;CIGAR=1X;DP=72;DPB=72;DPRA=1;EPP=31.2394;EPPR=131.127;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.983051;PAO=0;PQA=0;PQR=0;PRO=0;QA=425;QR=1972;RO=59;RPL=13;RPP=31.2394;RPPR=131.127;RPR=0;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=59;SRP=131.127;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:18:18,0:18:609:0:0:0,-5.41854,-55.1285 0/1:23:17,6:17:543:6:203:-11.6783,0,-42.2483 0/1:17:12,5:12:414:5:153:-8.95469,0,-32.4739 0/1:14:12,2:12:406:2:69:-2.33824,0,-32.6515 dDocent_Contig_8030 13 . T G 234.846 . AB=0.245614;ABP=35.049;AC=2;AF=0.25;AN=8;AO=14;CIGAR=1X1M1X;DP=85;DPB=85;DPRA=2.03571;EPP=33.4109;EPPR=157.185;GTI=0;LEN=1;MEANALT=1;MQM=58.2857;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.957746;PAO=0;PQA=0;PQR=0;PRO=0;QA=484;QR=2857;RO=71;RPL=0;RPP=33.4109;RPPR=157.185;RPR=14;RUN=1;SAF=0;SAP=33.4109;SAR=14;SRF=71;SRP=157.185;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:26:17,9:17:690:9:313:-20.4878,0,-54.6021 0|1:31:26,5:26:1036:5:171:-6.39475,0,-84.203 0|0:22:22,0:22:889:0:0:0,-6.62266,-80.3159 0|0:6:6,0:6:242:0:0:0,-1.80618,-22.1575 dDocent_Contig_8031 22 . A C 413.697 . AB=0.27027;ABP=36.9322;AC=3;AF=0.375;AN=8;AO=20;CIGAR=1X;DP=102;DPB=102;DPRA=0.880952;EPP=46.4397;EPPR=181.071;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=755;QR=3204;RO=82;RPL=0;RPP=46.4397;RPPR=181.071;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=82;SRP=181.071;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:28:28,0:28:1087:0:0:0,-8.42884,-98.1245 0/1:45:40,5:40:1572:5:198:-4.6514,0,-128.185 0/1:21:9,12:9:350:12:439:-33.5217,0,-25.5386 0/1:8:5,3:5:195:3:118:-8.59427,0,-15.516 dDocent_Contig_8033 1 . N G 66.4848 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=70;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:70:-6.6474,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_8034 40 . T C 325.015 . AB=0.104478;ABP=185.09;AC=2;AF=0.25;AN=8;AO=14;CIGAR=1X3M2X;DP=134;DPB=134;DPRA=0;EPP=33.4109;EPPR=213.643;GTI=0;LEN=1;MEANALT=2.25;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=543;QR=3730;RO=97;RPL=0;RPP=33.4109;RPPR=213.643;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=97;SRP=213.643;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:35:21,6,8,0:21:808:6,8,0:239,303,0:-18.5068,-5.13881,-69.672,0,-46.6402,-63.9163,-24.8284,-71.4781,-66.3245,-91.162 0|1:51:43,4,4,0:43:1655:4,4,0:158,157,0:-0.05887,0,-134.658,-0.0918483,-122.949,-134.748,-13.0032,-135.863,-135.952,-148.865 0|1:34:26,3,2,3:26:991:3,2,3:113,67,88:-1.45713,0,-80.4441,-3.85798,-75.9236,-84.581,-2.299,-74.3454,-78.1813,-82.7012 0|0:14:7,1,6,0:7:276:1,6,0:33,236,0:-17.3603,-16.8084,-39.2153,0,-20.1033,-20.9573,-19.4675,-39.5164,-22.7635,-42.18 dDocent_Contig_8035 55 . G A 883.485 . AB=0.581818;ABP=6.20829;AC=3;AF=0.375;AN=8;AO=32;CIGAR=1X;DP=68;DPB=68;DPRA=1.41026;EPP=72.4974;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1214;QR=1402;RO=36;RPL=32;RPP=72.4974;RPPR=81.1833;RPR=0;RUN=1;SAF=32;SAP=72.4974;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:13,18:13:511:18:679:-52.0892,0,-37.0019 0/0:13:13,0:13:511:0:0:0,-3.91339,-46.3347 0/1:19:7,12:7:258:12:454:-35.4767,0,-17.8476 0/1:5:3,2:3:122:2:81:-6.18058,0,-9.86734 dDocent_Contig_8036 31 . A C 85.2473 . AB=0.285714;ABP=8.59409;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=47;DPB=47;DPRA=1.27273;EPP=11.6962;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=153;QR=1743;RO=43;RPL=0;RPP=11.6962;RPPR=96.3836;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:10,4:10:405:4:153:-9.9226,0,-32.5956 0/0:15:15,0:15:607:0:0:0,-4.51545,-54.9683 0/0:14:14,0:14:568:0:0:0,-4.21442,-51.4624 0/0:4:4,0:4:163:0:0:0,-1.20412,-15.0584 dDocent_Contig_8038 60 . T C 958.47 . AB=0.561404;ABP=4.877;AC=2;AF=0.25;AN=8;AO=32;CIGAR=1X;DP=98;DPB=98;DPRA=1.39024;EPP=72.4974;EPPR=146.327;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1286;QR=2601;RO=66;RPL=32;RPP=72.4974;RPPR=146.327;RPR=0;RUN=1;SAF=32;SAP=72.4974;SAR=0;SRF=66;SRP=146.327;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:48:23,25:23:887:25:1008:-76.5657,0,-65.6848 0/0:15:15,0:15:597:0:0:0,-4.51545,-54.0676 0/1:9:2,7:2:81:7:278:-22.6791,0,-4.97646 0/0:26:26,0:26:1036:0:0:0,-7.82678,-93.5327 dDocent_Contig_8039 128 . G A 947.176 . AB=0.550725;ABP=4.55236;AC=4;AF=0.5;AN=8;AO=38;CIGAR=1X4M;DP=69;DPB=69;DPRA=0;EPP=85.5263;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1348;QR=960;RO=28;RPL=0;RPP=85.5263;RPPR=63.8115;RPR=38;RUN=1;SAF=0;SAP=85.5263;SAR=38;SRF=0;SRP=63.8115;SRR=28;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:19:4,0,15:4:139:0,15:0,535:-42.7652,-43.9693,-55.2686,0,-11.6486,-7.13312 0|1:14:7,0,7:7:237:0,7:0,250:-18.6323,-20.7395,-39.9457,0,-19.5538,-17.4466 0|1:25:11,1,13:11:383:1,13:35,456:-33.7975,-34.2612,-65.1045,0,-28.296,-27.2305 0|1:11:6,2,3:6:201:2,3:70,107:-6.92038,-3.03374,-18.6953,0,-10.5676,-15.3637 dDocent_Contig_8041 19 . C T 767.932 . AB=0.33;ABP=28.1125;AC=4;AF=0.5;AN=8;AO=33;CIGAR=1X1M2X;DP=100;DPB=100;DPRA=0;EPP=74.6689;EPPR=139.813;GTI=0;LEN=1;MEANALT=1.75;MQM=58.5152;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.454545;PAIREDR=0.793651;PAO=0;PQA=0;PQR=0;PRO=0;QA=1259;QR=2462;RO=63;RPL=0;RPP=74.6689;RPPR=139.813;RPR=33;RUN=1;SAF=33;SAP=74.6689;SAR=0;SRF=63;SRP=139.813;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:41:23,16:23:916:16:617:-43.7958,0,-70.7065 0|1:28:21,5:21:817:5:195:-8.78138,0,-65.7713 0|1:20:13,7:13:504:7:255:-17.2771,0,-39.6839 0|1:11:6,5:6:225:5:192:-14.3368,0,-17.2959 dDocent_Contig_8042 34 . T G 167.971 . AB=0.0821918;ABP=113.696;AC=1;AF=0.125;AN=8;AO=9;CIGAR=9M1X9M;DP=132;DPB=132.316;DPRA=10.6667;EPP=22.5536;EPPR=241.872;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=367;QR=4329;RO=110;RPL=0;RPP=22.5536;RPPR=241.872;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=110;SRP=241.872;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:60:43,10,5:43:1697:10,5:380,203:-18.1934,0,-136.609,-14.3889,-122.875,-152.52 0|0:55:52,0,3:52:2043:0,3:0,123:0,-15.6536,-183.671,-5.09186,-173.517,-172.614 0|1:13:11,0,1:11:436:0,1:0,41:-0.127501,-3.43883,-39.3628,0,-35.9771,-35.6761 0|0:4:4,0,0:4:153:0,0:0,0:0,-1.20412,-14.1407,-1.20412,-14.1407,-14.1407 dDocent_Contig_8043 35 . T A 530.921 . AB=0.297297;ABP=29.4201;AC=3;AF=0.375;AN=8;AO=25;CIGAR=1X;DP=120;DPB=120;DPRA=0;EPP=57.2971;EPPR=209.3;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.96;PAIREDR=0.936842;PAO=0;PQA=0;PQR=0;PRO=0;QA=1007;QR=3634;RO=95;RPL=0;RPP=57.2971;RPPR=209.3;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=95;SRP=209.3;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:33:24,9:24:931:9:361:-22.919,0,-74.16 0/0:46:43,3:43:1648:3:122:0,-2.47489,-137.2 0/1:28:17,11:17:655:11:443:-31.7969,0,-50.851 0/1:13:11,2:11:400:2:81:-3.77234,0,-32.4192 dDocent_Contig_8044 9 . C T 51.9264 . AB=0.16;ABP=28.1125;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=56;DPB=56;DPRA=2.41935;EPP=11.6962;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=156;QR=1992;RO=52;RPL=0;RPP=11.6962;RPPR=115.927;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:14:14,0:14:531:0:0:0,-4.21442,-48.1306 0/1:25:21,4:21:810:4:156:-6.89154,0,-65.6983 0/0:13:13,0:13:495:0:0:0,-3.91339,-44.8947 0/0:4:4,0:4:156:0:0:0,-1.20412,-14.4173 dDocent_Contig_8045 16 . T A 652.467 . AB=0.207547;ABP=121.13;AC=3;AF=0.375;AN=8;AO=35;CIGAR=1X;DP=186;DPB=186;DPRA=0;EPP=79.0118;EPPR=330.903;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.980132;PAO=0;PQA=0;PQR=0;PRO=0;QA=1382;QR=6068;RO=151;RPL=0;RPP=79.0118;RPPR=330.903;RPR=35;RUN=1;SAF=35;SAP=79.0118;SAR=0;SRF=151;SRP=330.903;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:67:47,20:47:1878:20:792:-51.4293,0,-149.055 0/1:45:37,8:37:1479:8:315:-15.1661,0,-119.812 0/1:47:42,5:42:1707:5:198:-4.04806,0,-139.696 0/0:27:25,2:25:1004:2:77:0,-0.81961,-83.3485 dDocent_Contig_8046 10 . C A 122.688 . AB=0.230769;ABP=19.3799;AC=1;AF=0.125;AN=8;AO=17;CIGAR=1X;DP=289;DPB=289;DPRA=0.504348;EPP=39.9253;EPPR=593.651;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.764706;PAIREDR=0.867647;PAO=0;PQA=0;PQR=0;PRO=0;QA=670;QR=10935;RO=272;RPL=0;RPP=39.9253;RPPR=593.651;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=272;SRP=593.651;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:77:71,6:71:2867:6:238:0,-1.38607,-236.332 0/0:115:115,0:115:4607:0:0:0,-34.6184,-414.539 0/0:71:66,5:66:2646:5:194:0,-3.54227,-220.426 0/1:26:20,6:20:815:6:238:-13.9677,0,-65.8374 dDocent_Contig_8047 60 . T C 55.5147 . AB=0.214286;ABP=12.937;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=57;DPB=57;DPRA=0.976744;EPP=9.52472;EPPR=120.27;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=123;QR=2148;RO=54;RPL=3;RPP=9.52472;RPPR=120.27;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:31:31,0:31:1237:0:0:0,-9.33193,-111.603 0/1:14:11,3:11:427:3:123:-7.25037,0,-34.5657 0/0:8:8,0:8:321:0:0:0,-2.40824,-29.2575 0/0:4:4,0:4:163:0:0:0,-1.20412,-15.0584 dDocent_Contig_8048 12 . C T 45.7557 . AB=0.4;ABP=3.44459;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X;DP=58;DPB=58;DPRA=0.283019;EPP=7.35324;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=2219;RO=56;RPL=0;RPP=7.35324;RPPR=124.613;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:26:26,0:26:1030:0:0:0,-7.82678,-92.996 0/0:16:16,0:16:627:0:0:0,-4.81648,-56.7585 0/1:5:3,2:3:120:2:82:-6.27453,0,-9.68216 0/0:11:11,0:11:442:0:0:0,-3.31133,-40.1354 dDocent_Contig_8049 11 . G T 47.6655 . AB=0.0970874;ABP=148.246;AC=1;AF=0.125;AN=8;AO=10;CIGAR=1X;DP=213;DPB=213;DPRA=2.80909;EPP=24.725;EPPR=441.648;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=409;QR=8051;RO=202;RPL=0;RPP=24.725;RPPR=441.648;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=202;SRP=441.648;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:103:93,10:93:3731:10:409:-6.16448,0,-304.787 0/0:75:74,0:74:2941:0:0:0,-22.2762,-264.379 0/0:23:23,0:23:929:0:0:0,-6.92369,-83.9126 0/0:12:12,0:12:450:0:0:0,-3.61236,-40.8323 dDocent_Contig_8050 75 . T C 134.49 . AB=0.291667;ABP=12.0581;AC=2;AF=0.25;AN=8;AO=7;CIGAR=1X;DP=43;DPB=43;DPRA=1.26316;EPP=18.2106;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.428571;PAIREDR=0.888889;PAO=0;PQA=0;PQR=0;PRO=0;QA=243;QR=1255;RO=36;RPL=7;RPP=18.2106;RPPR=81.1833;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:11,0:11:391:0:0:0,-3.31133,-35.5297 0/1:13:7,6:7:236:6:208:-15.1463,0,-17.6546 0/1:11:10,1:10:355:1:35:-0.187299,0,-28.9795 0/0:8:8,0:8:273:0:0:0,-2.40824,-24.9013 dDocent_Contig_8051 23 . G A 67.592 . AB=0;ABP=0;AC=2;AF=0.25;AN=8;AO=2;CIGAR=1X;DP=30;DPB=30;DPRA=0.214286;EPP=7.35324;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=68;QR=950;RO=28;RPL=0;RPP=7.35324;RPPR=63.8115;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=63.8115;SRR=28;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:15:15,0:15:502:0:0:0,-4.51545,-45.4948 0/0:6:6,0:6:210:0:0:0,-1.80618,-19.2425 0/0:7:7,0:7:238:0:0:0,-2.10721,-21.7522 1/1:2:0,2:0:0:2:68:-6.45788,-0.60206,0 dDocent_Contig_8052 27 . C T 116.502 . AB=0.175;ABP=39.7082;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=144;DPB=144;DPRA=1.15385;EPP=18.2106;EPPR=300.502;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=278;QR=5419;RO=137;RPL=0;RPP=18.2106;RPPR=300.502;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=137;SRP=300.502;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:72:72,0:72:2850:0:0:0,-21.6742,-256.629 0/1:40:33,7:33:1307:7:278:-13.3492,0,-105.862 0/0:21:21,0:21:829:0:0:0,-6.32163,-74.9295 0/0:11:11,0:11:433:0:0:0,-3.31133,-39.3246 dDocent_Contig_8053 9 . C A 1893.39 . AB=0.563025;ABP=7.11603;AC=4;AF=0.5;AN=8;AO=67;CIGAR=1X;DP=119;DPB=119;DPRA=0;EPP=148.499;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2569;QR=2003;RO=52;RPL=0;RPP=148.499;RPPR=115.927;RPR=67;RUN=1;SAF=67;SAP=148.499;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:37:12,25:12:463:25:962:-75.7561,0,-30.8828 0/1:51:27,24:27:1037:24:927:-68.3934,0,-78.2829 0/1:26:10,16:10:386:16:602:-46.6886,0,-27.2704 0/1:5:3,2:3:117:2:78:-5.89832,0,-9.40523 dDocent_Contig_8054 198 . T C 197.436 . AB=0.25641;ABP=23.1103;AC=3;AF=0.375;AN=8;AO=10;CIGAR=1X;DP=46;DPB=46;DPRA=1.85714;EPP=24.725;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=388;QR=1357;RO=36;RPL=10;RPP=24.725;RPPR=81.1833;RPR=0;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=81.1833;SRR=36;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:8,1:8:311:1:39:-1.18729,0,-25.645 0/1:14:8,6:8:311:6:234:-17.2167,0,-24.1399 0/1:16:13,3:13:466:3:115:-5.90841,0,-37.4492 0/0:7:7,0:7:269:0:0:0,-2.10721,-24.5746 dDocent_Contig_8056 57 . A G 363.4 . AB=0.666667;ABP=7.35324;AC=1;AF=0.125;AN=8;AO=13;CIGAR=1X;DP=50;DPB=50;DPRA=2.57143;EPP=31.2394;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=520;QR=1489;RO=37;RPL=13;RPP=31.2394;RPPR=83.3548;RPR=0;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:9:9,0:9:368:0:0:0,-2.70927,-33.4854 0/1:18:6,12:6:240:12:479:-38.0389,0,-16.5565 0/0:18:17,1:17:682:1:41:0,-1.32397,-57.6152 0/0:5:5,0:5:199:0:0:0,-1.50515,-18.288 dDocent_Contig_8057 9 . C G 1839.59 . AB=0.45098;ABP=6.20364;AC=4;AF=0.5;AN=8;AO=69;CIGAR=1X;DP=153;DPB=153;DPRA=0;EPP=152.842;EPPR=185.414;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2623;QR=3215;RO=84;RPL=0;RPP=152.842;RPPR=185.414;RPR=69;RUN=1;SAF=69;SAP=152.842;SAR=0;SRF=84;SRP=185.414;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:51:25,26:25:942:26:987:-73.7852,0,-69.7367 0/1:44:20,24:20:772:24:898:-67.8905,0,-56.5632 0/1:46:30,16:30:1150:16:621:-42.3828,0,-89.9531 0/1:12:9,3:9:351:3:117:-7.29802,0,-28.3395 dDocent_Contig_8058 9 . C T 1655.52 . AB=0.550459;ABP=5.42083;AC=3;AF=0.375;AN=8;AO=63;CIGAR=1X;DP=201;DPB=201;DPRA=0;EPP=139.813;EPPR=300.502;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.984127;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2368;QR=5255;RO=137;RPL=0;RPP=139.813;RPPR=300.502;RPR=63;RUN=1;SAF=63;SAP=139.813;SAR=0;SRF=137;SRP=300.502;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:62:13,49:13:505:49:1830:-146.29,0,-27.1352 0/0:92:88,3:88:3374:3:115:0,-17.0419,-293.072 0/1:22:16,6:16:618:6:230:-14.4441,0,-49.3373 0/1:25:20,5:20:758:5:193:-10.2157,0,-61.021 dDocent_Contig_8059 44 . C A 33.3447 . AB=0.121212;ABP=44.1367;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=104;DPB=104;DPRA=1.39437;EPP=11.6962;EPPR=220.158;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=162;QR=3992;RO=100;RPL=0;RPP=11.6962;RPPR=220.158;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=100;SRP=220.158;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:51:51,0:51:2033:0:0:0,-15.3525,-183.151 0/1:33:29,4:29:1168:4:162:-5.03297,0,-95.464 0/0:18:18,0:18:709:0:0:0,-5.41854,-64.137 0/0:2:2,0:2:82:0:0:0,-0.60206,-7.77968 dDocent_Contig_8060 11 . G A 370.845 . AB=0.253333;ABP=42.6469;AC=3;AF=0.375;AN=8;AO=20;CIGAR=1X;DP=116;DPB=116;DPRA=0;EPP=46.4397;EPPR=211.472;GTI=0;LEN=1;MEANALT=1;MQM=41.4;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.78125;PAO=0;PQA=0;PQR=0;PRO=0;QA=798;QR=3795;RO=96;RPL=0;RPP=46.4397;RPPR=211.472;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=96;SRP=211.472;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:41:40,1:40:1603:1:40:0,-8.55466,-140.715 0/1:28:22,6:22:860:6:240:-12.2456,0,-69.2732 0/1:44:32,12:32:1250:12:478:-27.796,0,-99.5267 0/1:3:2,1:2:82:1:40:-2.39962,0,-6.87659 dDocent_Contig_8062 77 . G A 656.004 . AB=0.0833333;ABP=57.2971;AC=0;AF=0;AN=8;AO=3;CIGAR=1X3M1X2M1X;DP=63;DPB=63;DPRA=0;EPP=9.52472;EPPR=68.1545;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=0.666667;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=107;QR=1066;RO=30;RPL=3;RPP=9.52472;RPPR=68.1545;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:14:11,1,0,2:11:395:1,0,2:35,0,72:-2.57015,-3.03706,-34.9572,-5.88148,-35.2582,-38.1053,0,-29.3832,-32.2302,-31.6282 0|0:22:11,2,9,0:11:385:2,9,0:72,307,0:-21.5841,-19.0172,-49.7438,0,-25.439,-28.6061,-24.8955,-50.3459,-31.3153,-56.222 0|0:23:8,0,14,1:8:286:0,14,1:0,485,32:-37.0357,-39.4439,-62.7682,0,-23.3531,-19.1387,-36.8673,-60.1912,-20.7789,-59.8901 0|0:4:0,0,3,1:0:0:0,3,1:0,104,36:-11.7407,-11.7407,-11.7407,-3.29724,-3.29724,-2.39415,-8.8,-8.8,0,-8.49897 dDocent_Contig_8063 14 . A C 522.973 . AB=0.214876;ABP=88.4515;AC=4;AF=0.5;AN=8;AO=26;CIGAR=1X;DP=121;DPB=121;DPRA=0;EPP=59.4686;EPPR=209.3;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.346154;PAIREDR=0.557895;PAO=0;PQA=0;PQR=0;PRO=0;QA=1044;QR=3809;RO=95;RPL=0;RPP=59.4686;RPPR=209.3;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=95;SRP=209.3;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:42:32,10:32:1286:10:394:-23.1721,0,-103.36 0/1:20:13,7:13:519:7:285:-20.0038,0,-41.0358 0/1:38:31,7:31:1247:7:284:-14.4949,0,-101.058 0/1:21:19,2:19:757:2:81:-1.3641,0,-62.1271 dDocent_Contig_8064 33 . G A 791.362 . AB=0.344444;ABP=21.9262;AC=3;AF=0.375;AN=8;AO=33;CIGAR=1X3M;DP=117;DPB=117;DPRA=0;EPP=74.6689;EPPR=178.9;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1303;QR=3188;RO=81;RPL=0;RPP=74.6689;RPPR=178.9;RPR=33;RUN=1;SAF=33;SAP=74.6689;SAR=0;SRF=81;SRP=178.9;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:30:15,0,15:15:601:0,15:0,601:-45.3938,-49.9092,-99.4236,0,-49.9146,-45.3992 0|0:27:23,2,2:23:911:2,2:81,81:0,-0.244528,-74.617,-0.244528,-68.5392,-74.617 0|1:43:28,0,14:28:1079:0,14:0,550:-37.0958,-45.5246,-134.117,0,-88.8778,-84.6634 0|1:17:15,0,2:15:597:0,2:0,71:-1.62407,-6.13952,-55.3352,0,-49.5555,-48.9535 dDocent_Contig_8066 27 . C T 519.113 . AB=0.222222;ABP=75.3927;AC=2;AF=0.25;AN=8;AO=28;CIGAR=1X;DP=193;DPB=193;DPRA=0;EPP=63.8115;EPPR=361.303;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1131;QR=6617;RO=165;RPL=0;RPP=63.8115;RPPR=361.303;RPR=28;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=165;SRP=361.303;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:55:52,3:52:2093:3:122:0,-5.18416,-177.176 0/1:81:71,10:71:2858:10:404:-12.336,0,-232.932 0/1:27:13,14:13:496:14:564:-42.9732,0,-36.8406 0/0:30:29,1:29:1170:1:41:0,-4.93633,-101.483 dDocent_Contig_8067 65 . T G 40.1684 . AB=0.2;ABP=14.7363;AC=2;AF=0.25;AN=8;AO=3;CIGAR=1X;DP=40;DPB=40;DPRA=0.6;EPP=9.52472;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=123;QR=1444;RO=37;RPL=3;RPP=9.52472;RPPR=83.3548;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:11,2:11:428:2:82:-3.86629,0,-34.9578 0/0:19:19,0:19:758:0:0:0,-5.71957,-68.5425 0/0:6:6,0:6:229:0:0:0,-1.80618,-20.9748 0/1:2:1,1:1:29:1:41:-3.49251,0,-2.2976 dDocent_Contig_8069 1 . N G 112.807 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=121;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:121:-11.2802,-0.90309,0 ./.:.:.:.:.:.:.:. dDocent_Contig_8070 14 . G A 1495.61 . AB=0.491379;ABP=3.08518;AC=4;AF=0.5;AN=8;AO=57;CIGAR=1X;DP=116;DPB=116;DPRA=0;EPP=126.784;EPPR=131.127;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.983051;PAO=0;PQA=0;PQR=0;PRO=0;QA=2117;QR=2242;RO=59;RPL=0;RPP=126.784;RPPR=131.127;RPR=57;RUN=1;SAF=57;SAP=126.784;SAR=0;SRF=59;SRP=131.127;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:34:22,12:22:827:12:455:-31.0622,0,-64.5127 0/1:37:15,22:15:574:22:838:-64.6057,0,-40.8615 0/1:32:16,16:16:610:16:560:-41.0841,0,-45.606 0/1:13:6,7:6:231:7:264:-20.2071,0,-17.2445 dDocent_Contig_8071 106 . N A 241.475 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=9;CIGAR=2X;DP=10;DPB=10;DPRA=0;EPP=22.5536;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=10.8435;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=267;QR=0;RO=0;RPL=0;RPP=22.5536;RPPR=0;RPR=9;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. 1|1:10:0,9:0:0:9:267:-24.1475,-2.70927,0 .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. dDocent_Contig_8073 119 . C T 81.9155 . AB=0.169492;ABP=58.9901;AC=2;AF=0.25;AN=8;AO=10;CIGAR=1X;DP=93;DPB=93;DPRA=1.73529;EPP=24.725;EPPR=183.243;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.951807;PAO=0;PQA=0;PQR=0;PRO=0;QA=319;QR=2742;RO=83;RPL=0;RPP=24.725;RPPR=183.243;RPR=10;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=183.243;SRR=83;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:23,6:23:785:6:181:-7.85779,0,-62.2355 0/0:31:31,0:31:999:0:0:0,-9.33193,-90.2022 0/1:30:26,4:26:857:4:138:-3.72955,0,-68.403 0/0:3:3,0:3:101:0:0:0,-0.90309,-9.4236 dDocent_Contig_8075 40 . T C 689.589 . AB=0.204545;ABP=136.457;AC=4;AF=0.5;AN=8;AO=36;CIGAR=1X;DP=176;DPB=176;DPRA=0;EPP=81.1833;EPPR=307.016;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.916667;PAIREDR=0.914286;PAO=0;PQA=0;PQR=0;PRO=0;QA=1421;QR=5456;RO=140;RPL=0;RPP=81.1833;RPPR=307.016;RPR=36;RUN=1;SAF=36;SAP=81.1833;SAR=0;SRF=140;SRP=307.016;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:44:33,11:33:1286:11:437:-26.4407,0,-102.771 0/1:45:34,11:34:1360:11:439:-26.3185,0,-109.117 0/1:61:51,10:51:2004:10:386:-16.732,0,-162.201 0/1:26:22,4:22:806:4:159:-6.86555,0,-65.0234 dDocent_Contig_8076 19 . A G 783.47 . AB=0.295238;ABP=41.2489;AC=2;AF=0.25;AN=8;AO=31;CIGAR=1X;DP=189;DPB=189;DPRA=1.25;EPP=70.3259;EPPR=346.103;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1252;QR=6249;RO=158;RPL=0;RPP=70.3259;RPPR=346.103;RPR=31;RUN=1;SAF=31;SAP=70.3259;SAR=0;SRF=158;SRP=346.103;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:69:69,0:69:2683:0:0:0,-20.7711,-241.607 0/1:79:53,26:53:2114:26:1050:-71.0099,0,-166.668 0/1:26:21,5:21:846:5:202:-10.7351,0,-68.6254 0/0:15:15,0:15:606:0:0:0,-4.51545,-54.8786 dDocent_Contig_8077 171 . G C 400.06 . AB=0.313725;ABP=18.3809;AC=2;AF=0.333333;AN=6;AO=16;CIGAR=1X;DP=70;DPB=70;DPRA=1.34211;EPP=37.7539;EPPR=120.27;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=646;QR=2140;RO=54;RPL=16;RPP=37.7539;RPPR=120.27;RPR=0;RUN=1;SAF=0;SAP=37.7539;SAR=16;SRF=0;SRP=120.27;SRR=54;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 0/1:39:26,13:26:1022:13:523:-35.6765,0,-80.5283 0/0:19:19,0:19:767:0:0:0,-5.71957,-69.3508 0/1:12:9,3:9:351:3:123:-7.85243,0,-28.3363 dDocent_Contig_8078 171 . A G 75.6405 . AB=0.185185;ABP=26.2531;AC=3;AF=0.375;AN=8;AO=5;CIGAR=1X;DP=37;DPB=37;DPRA=0.9;EPP=13.8677;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=203;QR=1266;RO=32;RPL=5;RPP=13.8677;RPPR=72.4974;RPR=0;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=72.4974;SRR=32;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:10:10,0:10:401:0:0:0,-3.0103,-36.4481 0/1:13:10,3:10:403:3:122:-7.4591,0,-32.7149 0/1:12:11,1:11:422:1:40:-0.383319,0,-34.7141 0/1:2:1,1:1:40:1:41:-3.49251,0,-3.39362 dDocent_Contig_8079 13 . G A 110.834 . AB=0.175;ABP=39.7082;AC=2;AF=0.25;AN=8;AO=7;CIGAR=1X;DP=154;DPB=154;DPRA=0.350877;EPP=18.2106;EPPR=322.217;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.979592;PAO=0;PQA=0;PQR=0;PRO=0;QA=286;QR=5882;RO=147;RPL=0;RPP=18.2106;RPPR=322.217;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=147;SRP=322.217;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:73:73,0:73:2896:0:0:0,-21.9752,-260.738 0/0:41:41,0:41:1649:0:0:0,-12.3422,-148.632 0/1:18:14,4:14:569:4:164:-9.73136,0,-46.1334 0/1:22:19,3:19:768:3:122:-4.74983,0,-62.8155 dDocent_Contig_8080 25 . C A 119.811 . AB=0;ABP=0;AC=0;AF=0;AN=8;AO=4;CIGAR=2X2M1X;DP=283;DPB=283;DPRA=0;EPP=11.6962;EPPR=480.887;GTI=0;LEN=1;MEANALT=4;MQM=38;MQMR=59.1623;NS=4;NUMALT=4;ODDS=0;PAIRED=0;PAIREDR=0.289474;PAO=0;PQA=0;PQR=0;PRO=0;QA=161;QR=9050;RO=228;RPL=0;RPP=11.6962;RPPR=498.106;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=226;SRP=480.887;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:75:58,4,4,3,6:58:2283:4,4,3,6:163,161,121,243:0,-8.67906,-195.299,-5.70501,-184.76,-192.345,-7.46848,-186.528,-183.574,-194.413,-3.6198,-182.653,-179.699,-181.466,-189.635 0|0:83:66,0,0,7,8:66:2607:0,0,7,8:0,0,283,312:-3.69845,-23.5664,-238.099,-23.5664,-238.099,-238.099,-0.209797,-214.765,-214.765,-212.658,0,-214.528,-214.528,-191.195,-212.12 0|0:73:60,0,0,1,12:60:2396:0,0,1,12:0,0,41,474:-10.9236,-28.9854,-226.399,-28.9854,-226.399,-226.399,-25.5931,-223.014,-223.014,-222.713,0,-197.331,-197.331,-193.946,-193.718 0|0:52:44,0,0,0,6:44:1764:0,0,0,6:0,0,0,219:-2.67332,-15.9186,-151.745,-15.9186,-151.745,-151.745,-15.9186,-151.745,-151.745,-151.745,0,-135.82,-135.82,-135.82,-134.014 dDocent_Contig_8081 162 . C T 616.591 . AB=0.346667;ABP=18.3264;AC=3;AF=0.375;AN=8;AO=27;CIGAR=1X;DP=93;DPB=93;DPRA=0;EPP=45.5551;EPPR=146.327;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1025;QR=2576;RO=66;RPL=25;RPP=45.5551;RPPR=146.327;RPR=2;RUN=1;SAF=0;SAP=61.6401;SAR=27;SRF=0;SRP=146.327;SRR=66;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:13,15:13:509:15:568:-43.0168,0,-37.7256 0/1:37:28,9:28:1076:9:334:-19.2706,0,-85.9848 0/0:18:17,1:17:678:1:41:0,-1.32397,-57.2573 0/1:10:8,2:8:313:2:82:-4.76938,0,-25.5215 dDocent_Contig_8082 50 . A G 600.564 . 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AB=0.5;ABP=3.0103;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X;DP=113;DPB=113;DPRA=0.110092;EPP=7.35324;EPPR=241.872;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=77;QR=4064;RO=110;RPL=2;RPP=7.35324;RPPR=241.872;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=110;SRP=241.872;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:40:40,0:40:1488:0:0:0,-12.0412,-134.198 0/0:52:51,0:51:1877:0:0:0,-15.3525,-168.792 0/0:17:17,0:17:631:0:0:0,-5.11751,-57.123 0/1:4:2,2:2:68:2:77:-6.10502,0,-5.2533 dDocent_Contig_8097 131 . T C 1629.92 . AB=0.211009;ABP=82.0798;AC=1;AF=0.125;AN=8;AO=23;CIGAR=1M1X1M;DP=109;DPB=149;DPRA=0;EPP=52.9542;EPPR=57.2971;GTI=0;LEN=1;MEANALT=2.25;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=789;QR=863;RO=25;RPL=0;RPP=52.9542;RPPR=57.2971;RPR=23;RUN=1;SAF=0;SAP=52.9542;SAR=23;SRF=0;SRP=57.2971;SRR=25;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:27:8,12,7:8:285:12,7:412,236:-31.0496,0,-19.6281,-14.3367,-4.12589,-35.4649 0|1:26:3,15,8:3:108:15,8:532,285:-56.8539,-14.4143,-18.7121,-34.5261,0,-40.931 0|0:30:6,21,3:6:186:21,3:717,99:-56.3856,0,-8.5931,-50.189,-6.90381,-64.207 0|0:26:8,12,5:8:284:12,5:357,169:-26.1007,0,-19.5634,-14.7943,-9.47201,-36.4582 dDocent_Contig_8098 22 . A G 57.248 . AB=0.131579;ABP=47.8112;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=78;DPB=78;DPRA=2.85;EPP=13.8677;EPPR=161.528;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=202;QR=2919;RO=73;RPL=0;RPP=13.8677;RPPR=161.528;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=73;SRP=161.528;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:38:33,5:33:1322:5:202:-7.12273,0,-107.803 0/0:19:19,0:19:761:0:0:0,-5.71957,-68.8088 0/0:14:14,0:14:564:0:0:0,-4.21442,-51.1034 0/0:7:7,0:7:272:0:0:0,-2.10721,-24.8428 dDocent_Contig_8099 17 . A T 34.6289 . AB=0.1875;ABP=16.582;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=62;DPB=62;DPRA=1.04348;EPP=9.52472;EPPR=131.127;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=107;QR=2324;RO=59;RPL=0;RPP=9.52472;RPPR=131.127;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=59;SRP=131.127;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:13:13,0:13:523:0:0:0,-3.91339,-47.4168 0/0:17:17,0:17:672:0:0:0,-5.11751,-60.8118 0/0:16:16,0:16:626:0:0:0,-4.81648,-56.6749 0/1:16:13,3:13:503:3:107:-5.16171,0,-40.7974 dDocent_Contig_8100 11 . C A 3735.35 . AB=0.336493;ABP=101.004;AC=4;AF=0.5;AN=8;AO=142;CIGAR=1X;DP=422;DPB=422;DPRA=0;EPP=311.359;EPPR=602.337;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.985507;PAO=0;PQA=0;PQR=0;PRO=0;QA=5624;QR=10948;RO=276;RPL=0;RPP=311.359;RPPR=602.337;RPR=142;RUN=1;SAF=142;SAP=311.359;SAR=0;SRF=276;SRP=602.337;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:130:89,37:89:3529:37:1499:-96.8205,0,-279.325 0/1:118:81,37:81:3230:37:1446:-94.8685,0,-255.248 0/1:111:76,35:76:3020:35:1364:-89.5953,0,-238.477 0/1:63:30,33:30:1169:33:1315:-99.6487,0,-86.5189 dDocent_Contig_8101 24 . T C 447.564 . AB=0.380952;ABP=8.18047;AC=1;AF=0.166667;AN=6;AO=16;CIGAR=1X;DP=62;DPB=62;DPRA=4.2;EPP=37.7539;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=651;QR=1867;RO=46;RPL=0;RPP=37.7539;RPPR=102.898;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:42:26,16:26:1056:16:651:-46.2793,0,-82.6836 ./.:.:.:.:.:.:.:. 0/0:9:9,0:9:367:0:0:0,-2.70927,-33.3953 0/0:11:11,0:11:444:0:0:0,-3.31133,-40.3156 dDocent_Contig_8102 12 . C T 101.956 . AB=0.136364;ABP=78.8144;AC=3;AF=0.375;AN=8;AO=9;CIGAR=1X;DP=116;DPB=116;DPRA=0.44;EPP=22.5536;EPPR=210.031;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.8131;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.943925;PAO=0;PQA=0;PQR=0;PRO=0;QA=365;QR=4279;RO=107;RPL=0;RPP=22.5536;RPPR=235.358;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=104;SRP=210.031;SRR=3;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:34:31,3:31:1248:3:123:-1.22977,0,-102.288 0/0:50:50,0:50:1990:0:0:0,-15.0515,-179.295 0/1:22:20,2:20:795:2:81:-1.06307,0,-65.2401 0/1:10:6,4:6:246:4:161:-11.8646,0,-19.5098 dDocent_Contig_8104 209 . N G 74.0456 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=78;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:78:-7.40347,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_8106 107 . N A 601.562 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=23;CIGAR=1X;DP=23;DPB=23;DPRA=0;EPP=52.9542;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=649;QR=0;RO=0;RPL=0;RPP=52.9542;RPPR=0;RPR=23;RUN=1;SAF=0;SAP=52.9542;SAR=23;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:8:0,8:0:0:8:206:-18.7953,-2.40824,0 1/1:4:0,4:0:0:4:122:-11.2832,-1.20412,0 1/1:4:0,4:0:0:4:124:-11.4677,-1.20412,0 1/1:7:0,7:0:0:7:197:-18.0078,-2.10721,0 dDocent_Contig_8107 123 . G T 37.444 . AB=0.4;ABP=3.44459;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X;DP=40;DPB=40;DPRA=0.428571;EPP=7.35324;EPPR=77.0689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.921053;PAO=0;PQA=0;PQR=0;PRO=0;QA=70;QR=1297;RO=38;RPL=0;RPP=7.35324;RPPR=85.5263;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=1;SRP=77.0689;SRR=37;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:5:3,2:3:110:2:70:-5.14225,0,-8.75415 0/0:20:20,0:20:683:0:0:0,-6.0206,-61.7896 0/0:6:6,0:6:210:0:0:0,-1.80618,-19.2425 0/0:9:9,0:9:294:0:0:0,-2.70927,-26.7775 dDocent_Contig_8108 122 . C G 1480.16 . AB=0.575472;ABP=8.25461;AC=4;AF=0.5;AN=8;AO=61;CIGAR=1X;DP=106;DPB=106;DPRA=0;EPP=135.47;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2067;QR=1537;RO=45;RPL=0;RPP=135.47;RPPR=100.727;RPR=61;RUN=1;SAF=0;SAP=135.47;SAR=61;SRF=0;SRP=100.727;SRR=45;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:11,16:11:368:16:537:-40.522,0,-25.3156 0/1:32:13,19:13:442:19:646:-48.8277,0,-30.4729 0/1:35:13,22:13:453:22:748:-57.1003,0,-30.5667 0/1:12:8,4:8:274:4:136:-8.9635,0,-21.3815 dDocent_Contig_8109 149 . T A 200.382 . AB=0.2;ABP=53.8228;AC=2;AF=0.25;AN=8;AO=13;CIGAR=1X;DP=158;DPB=158;DPRA=0.698925;EPP=31.2394;EPPR=317.874;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=470;QR=5181;RO=145;RPL=0;RPP=31.2394;RPPR=317.874;RPR=13;RUN=1;SAF=0;SAP=31.2394;SAR=13;SRF=0;SRP=317.874;SRR=145;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:40:40,0:40:1470:0:0:0,-12.0412,-132.593 0/0:53:53,0:53:1892:0:0:0,-15.9546,-170.549 0/1:43:38,5:38:1322:5:181:-3.69893,0,-106.321 0/1:22:14,8:14:497:8:289:-19.7351,0,-38.4392 dDocent_Contig_8110 107 . N A 672.603 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=22;CIGAR=1X;DP=22;DPB=22;DPRA=0;EPP=50.7827;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=1.69407e-21;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=731;QR=0;RO=0;RPL=0;RPP=50.7827;RPPR=0;RPR=22;RUN=1;SAF=0;SAP=50.7827;SAR=22;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:15:0,15:0:0:15:489:-44.3202,-4.51545,0 1/1:4:0,4:0:0:4:139:-12.8527,-1.20412,0 ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:103:-9.61002,-0.90309,0 dDocent_Contig_8111 56 . G A 43.636 . AB=0.142857;ABP=41.7866;AC=2;AF=0.25;AN=8;AO=6;CIGAR=1X;DP=55;DPB=55;DPRA=8.83333;EPP=16.0391;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=234;QR=1927;RO=49;RPL=6;RPP=16.0391;RPPR=109.412;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:18:17,1:17:670:1:40:0,-1.42286,-56.6327 0/1:27:23,4:23:904:4:153:-6.01251,0,-73.5395 0/1:8:7,1:7:274:1:41:-1.68633,0,-22.6175 0/0:2:2,0:2:79:0:0:0,-0.60206,-7.49763 dDocent_Contig_8113 7 . T G 170.599 . AB=0.391304;ABP=5.3706;AC=2;AF=0.25;AN=8;AO=9;CIGAR=1X;DP=41;DPB=41;DPRA=1.27778;EPP=22.5536;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=44;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=0;PAIREDR=0.875;PAO=0;PQA=0;PQR=0;PRO=0;QA=303;QR=1219;RO=32;RPL=0;RPP=22.5536;RPPR=72.4974;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:11,0:11:429:0:0:0,-3.31133,-38.9656 0/1:5:2,3:2:78:3:94:-7.06521,0,-5.89832 0/1:18:12,6:12:445:6:209:-13.3926,0,-34.9712 0/0:7:7,0:7:267:0:0:0,-2.10721,-24.3929 dDocent_Contig_8114 43 . G A 278.867 . AB=0.4;ABP=5.18177;AC=1;AF=0.125;AN=8;AO=10;CIGAR=1X;DP=140;DPB=140;DPRA=0.652174;EPP=24.725;EPPR=274.512;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=0.992248;PAO=0;PQA=0;PQR=0;PRO=0;QA=405;QR=5079;RO=129;RPL=0;RPP=24.725;RPPR=274.512;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=129;SRP=283.13;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:15,10:15:588:10:405:-29.2847,0,-45.7321 0/0:55:54,0:54:2124:0:0:0,-16.2556,-191 0/0:39:39,0:39:1536:0:0:0,-11.7402,-138.486 0/0:21:21,0:21:831:0:0:0,-6.32163,-75.0999 dDocent_Contig_8115 39 . G A 969.96 . AB=0.2625;ABP=81.4005;AC=3;AF=0.375;AN=8;AO=45;CIGAR=1X;DP=207;DPB=207;DPRA=0;EPP=100.727;EPPR=352.617;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1784;QR=6460;RO=161;RPL=0;RPP=100.727;RPPR=352.617;RPR=45;RUN=1;SAF=45;SAP=100.727;SAR=0;SRF=161;SRP=352.617;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:48:36,12:36:1433:12:483:-29.3707,0,-114.769 0/1:77:50,26:50:2011:26:1026:-69.5074,0,-158.053 0/0:47:44,3:44:1777:3:123:0,-2.68362,-148.674 0/1:35:31,4:31:1239:4:152:-3.5126,0,-101.244 dDocent_Contig_8116 91 . A G 46.2331 . AB=0.181818;ABP=22.3561;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=149;DPB=149;DPRA=0.519685;EPP=11.6962;EPPR=315.702;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=0.979167;PAO=0;PQA=0;PQR=0;PRO=0;QA=140;QR=4895;RO=144;RPL=4;RPP=11.6962;RPPR=315.702;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=144;SRP=315.702;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:44:43,0:43:1457:0:0:0,-12.9443,-131.309 0/0:67:67,0:67:2300:0:0:0,-20.169,-207.27 0/0:16:16,0:16:547:0:0:0,-4.81648,-49.5546 0/1:22:18,4:18:591:4:140:-6.32227,0,-46.8783 dDocent_Contig_8117 74 . C T 120.012 . AB=0.15942;ABP=72.5289;AC=1;AF=0.125;AN=8;AO=11;CIGAR=1X;DP=170;DPB=170;DPRA=2.0495;EPP=26.8965;EPPR=348.274;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=376;QR=5422;RO=159;RPL=11;RPP=26.8965;RPPR=348.274;RPR=0;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=159;SRP=348.274;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:69:58,11:58:1994:11:376:-13.3991,0,-158.968 0/0:69:69,0:69:2346:0:0:0,-20.7711,-211.408 0/0:28:28,0:28:945:0:0:0,-8.42884,-85.3601 0/0:4:4,0:4:137:0:0:0,-1.20412,-12.6681 dDocent_Contig_8118 22 . G C 396.335 . AB=0.222222;ABP=63.329;AC=3;AF=0.375;AN=8;AO=21;CIGAR=1X;DP=103;DPB=103;DPRA=0;EPP=48.6112;EPPR=181.071;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.95122;PAO=0;PQA=0;PQR=0;PRO=0;QA=826;QR=3265;RO=82;RPL=0;RPP=48.6112;RPPR=181.071;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=82;SRP=181.071;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:35:23,12:23:916:12:468:-31.9285,0,-72.2085 0/1:32:28,4:28:1111:4:162:-5.334,0,-90.6427 0/0:13:12,1:12:473:1:37:0,-0.215561,-39.2167 0/1:23:19,4:19:765:4:159:-7.76826,0,-62.2473 dDocent_Contig_8119 30 . A T 60.9963 . AB=0.122449;ABP=63.6786;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X;DP=143;DPB=143;DPRA=7.9375;EPP=22.5536;EPPR=293.988;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=363;QR=5365;RO=134;RPL=0;RPP=22.5536;RPPR=293.988;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=134;SRP=293.988;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:49:43,6:43:1724:6:243:-7.4975,0,-140.63 0/0:78:75,3:75:2996:3:120:0,-12.2926,-258.543 0/0:12:12,0:12:483:0:0:0,-3.61236,-43.8211 0/0:4:4,0:4:162:0:0:0,-1.20412,-14.967 dDocent_Contig_8120 52 . T A 444 . AB=0.225;ABP=55.5599;AC=3;AF=0.375;AN=8;AO=21;CIGAR=1M1X14M;DP=140;DPB=136.5;DPRA=0;EPP=48.6112;EPPR=250.558;GTI=0;LEN=1;MEANALT=1.75;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=843;QR=4489;RO=114;RPL=21;RPP=48.6112;RPPR=250.558;RPR=0;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=114;SRP=250.558;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:60:57,0,3:57:2255:0,3:0,122:0,-17.1587,-202.734,-6.68931,-192.67,-191.767 0|1:46:32,2,11:32:1244:2,11:47,437:-26.5044,-32.5314,-134.162,0,-98.7872,-99.0931 0|1:30:25,0,5:25:990:0,5:0,203:-9.62216,-17.1479,-98.6231,0,-81.879,-80.3739 0|1:4:0,2,2:0:0:2,2:80,81:-13.6714,-7.08367,-6.48161,-6.98973,0,-6.38767 dDocent_Contig_8121 10 . G C 57.1135 . AB=0.0894309;ABP=183.101;AC=1;AF=0.125;AN=8;AO=46;CIGAR=1X1M;DP=795;DPB=795;DPRA=0;EPP=102.898;EPPR=1447.04;GTI=0;LEN=1;MEANALT=3.5;MQM=60;MQMR=59.5293;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=0.884211;PAO=0;PQA=0;PQR=0;PRO=0;QA=1837;QR=26414;RO=665;RPL=0;RPP=102.898;RPPR=1447.04;RPR=46;RUN=1;SAF=46;SAP=102.898;SAR=0;SRF=665;SRP=1447.04;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:252:212,12,11,16:212:8456:12,11,16:472,433,649:0,-30.1474,-722.396,-28.1979,-690.392,-720.766,-10.282,-672.486,-670.554,-701.354 0|0:193:168,14,5,6:168:6660:14,5,6:567,203,237:0,-4.2779,-545.517,-40.4491,-539.583,-584.336,-31.0643,-530.23,-566.34,-574.682 0|0:227:188,16,10,13:188:7462:16,10,13:643,407,507:0,-3.59474,-612.942,-28.0276,-589.183,-639.16,-14.9222,-576.089,-600.502,-625.164 0|1:123:97,6,8,11:97:3836:6,8,11:236,310,444:-7.41032,-17.1978,-328.973,-11.149,-305.317,-322.32,0,-294.177,-288.126,-310.278 dDocent_Contig_8122 41 . A C 105.612 . AB=0.176471;ABP=49.3776;AC=2;AF=0.25;AN=8;AO=9;CIGAR=1X;DP=65;DPB=65;DPRA=3.64286;EPP=22.5536;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=317;QR=2237;RO=56;RPL=0;RPP=22.5536;RPPR=124.613;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:17,6:17:678:6:205:-11.8491,0,-54.4281 0/1:28:25,3:25:993:3:112:-2.01638,0,-81.2332 0/0:9:9,0:9:361:0:0:0,-2.70927,-32.8535 0/0:5:5,0:5:205:0:0:0,-1.50515,-18.835 dDocent_Contig_8123 62 . T A 1725.06 . AB=0.407407;ABP=11.0528;AC=5;AF=0.625;AN=8;AO=62;CIGAR=1X1M1X;DP=127;DPB=127;DPRA=0;EPP=137.642;EPPR=141.985;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.983871;PAIREDR=0.96875;PAO=0;PQA=0;PQR=0;PRO=0;QA=2367;QR=2521;RO=64;RPL=62;RPP=137.642;RPPR=141.985;RPR=0;RUN=1;SAF=62;SAP=137.642;SAR=0;SRF=64;SRP=141.985;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:35:16,19:16:619:19:703:-53.0549,0,-45.5069 0|1:22:12,10:12:483:10:378:-27.7434,0,-37.1993 0|1:51:35,15:35:1378:15:581:-37.4207,0,-109.09 1|1:19:1,18:1:41:18:705:-59.6853,-1.625,0 dDocent_Contig_8124 43 . C T 127.04 . AB=0.416667;ABP=3.73412;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=45;DPB=45;DPRA=1.09091;EPP=13.8677;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.875;PAO=0;PQA=0;PQR=0;PRO=0;QA=196;QR=1469;RO=40;RPL=0;RPP=13.8677;RPPR=89.8692;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:18:18,0:18:638:0:0:0,-5.41854,-57.7301 0/0:2:2,0:2:74:0:0:0,-0.60206,-7.02486 0/0:13:13,0:13:491:0:0:0,-3.91339,-44.5297 0/1:12:7,5:7:266:5:196:-14.4027,0,-20.688 dDocent_Contig_8125 7 . T C 191.095 . AB=0.113208;ABP=71.8828;AC=2;AF=0.25;AN=8;AO=6;CIGAR=1X3M;DP=184;DPB=184;DPRA=0.40458;EPP=16.0391;EPPR=372.161;GTI=0;LEN=1;MEANALT=1.5;MQM=47.5;MQMR=59.8824;NS=4;NUMALT=2;ODDS=0;PAIRED=0.166667;PAIREDR=0.994118;PAO=0;PQA=0;PQR=0;PRO=0;QA=195;QR=6528;RO=170;RPL=0;RPP=16.0391;RPPR=372.161;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=170;SRP=372.161;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:88:87,1,0:87:3340:1,0:32,0:0,-23.2913,-297.537,-26.1896,-297.838,-300.416 0|1:42:34,7,1:34:1306:7,1:271,39:-12.0248,0,-104.783,-19.0536,-103.684,-125.646 0|0:43:43,0,0:43:1650:0,0:0,0:0,-12.9443,-148.765,-12.9443,-148.765,-148.765 0|1:11:6,0,5:6:232:0,5:0,156:-10.4827,-12.2889,-31.3924,0,-19.4428,-17.9376 dDocent_Contig_8126 151 . C T 270.958 . AB=0.37037;ABP=6.95112;AC=2;AF=0.25;AN=8;AO=10;CIGAR=1X;DP=41;DPB=41;DPRA=1.92857;EPP=24.725;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=406;QR=1212;RO=31;RPL=0;RPP=24.725;RPPR=70.3259;RPR=10;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=70.3259;SRR=31;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:7,9:7:259:9:366:-28.4885,0,-18.8437 0/0:8:8,0:8:312:0:0:0,-2.40824,-28.4381 0/1:11:10,1:10:400:1:40:-0.684349,0,-33.047 0/0:6:6,0:6:241:0:0:0,-1.80618,-22.0661 dDocent_Contig_8128 20 . A C 135.471 . AB=0.152778;ABP=78.4086;AC=3;AF=0.375;AN=8;AO=11;CIGAR=1X1M;DP=80;DPB=80;DPRA=3;EPP=26.8965;EPPR=146.327;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=433;QR=2572;RO=66;RPL=0;RPP=26.8965;RPPR=146.327;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=66;SRP=146.327;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:11:8,0,3:8:322:0,3:0,119:-7.78385,-10.1921,-36.7347,0,-26.9405,-26.0374 0|1:32:28,0,4:28:1100:0,4:0,160:-5.15084,-13.5797,-104.043,0,-90.8625,-89.6584 0|1:29:22,3,4:22:855:3,4:121,154:-6.00996,-2.65057,-72.0024,0,-60.263,-69.0349 0|0:8:8,0,0:8:295:0,0:0,0:0,-2.40824,-26.8925,-2.40824,-26.8925,-26.8925 dDocent_Contig_8129 24 . T C 591.437 . AB=0.301205;ABP=31.5011;AC=4;AF=0.5;AN=8;AO=25;CIGAR=1X;DP=83;DPB=83;DPRA=0;EPP=57.2971;EPPR=128.956;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.96;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1000;QR=2336;RO=58;RPL=0;RPP=57.2971;RPPR=128.956;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:23,7:23:929:7:283:-16.8116,0,-74.8816 0/1:29:18,11:18:721:11:436:-30.8579,0,-56.4864 0/1:19:13,6:13:527:6:240:-16.2556,0,-42.0576 0/1:5:4,1:4:159:1:41:-2.58942,0,-13.1863 dDocent_Contig_8130 53 . C A 33.7162 . AB=0.222222;ABP=9.04217;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=69;DPB=69;DPRA=1.55556;EPP=9.52472;EPPR=146.327;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=2647;RO=66;RPL=3;RPP=9.52472;RPPR=146.327;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=66;SRP=146.327;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:33:32,1:32:1278:1:40:0,-5.93831,-111.29 0/0:18:18,0:18:723:0:0:0,-5.41854,-65.3945 0/1:9:7,2:7:279:2:82:-5.07041,0,-22.771 0/0:9:9,0:9:367:0:0:0,-2.70927,-33.3953 dDocent_Contig_8131 37 . T G 275.341 . AB=0.163636;ABP=111.11;AC=3;AF=0.375;AN=8;AO=18;CIGAR=1X;DP=180;DPB=180;DPRA=0.52381;EPP=42.0968;EPPR=354.789;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=721;QR=6487;RO=162;RPL=0;RPP=42.0968;RPPR=354.789;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=162;SRP=354.789;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:70:70,0:70:2824:0:0:0,-21.0721,-254.253 0/1:53:42,11:42:1680:11:442:-24.1801,0,-135.47 0/1:40:35,5:35:1376:5:198:-6.15527,0,-112.049 0/1:17:15,2:15:607:2:81:-2.56822,0,-49.8497 dDocent_Contig_8132 9 . A T 32.9648 . AB=0.25;ABP=7.35324;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X;DP=111;DPB=111;DPRA=0.23301;EPP=7.35324;EPPR=239.701;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=78;QR=4202;RO=109;RPL=0;RPP=7.35324;RPPR=239.701;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=109;SRP=239.701;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:47:47,0:47:1811:0:0:0,-14.1484,-163.24 0/0:35:35,0:35:1359:0:0:0,-10.536,-122.593 0/0:21:21,0:21:798:0:0:0,-6.32163,-72.145 0/1:8:6,2:6:234:2:78:-4.99523,0,-19.0229 dDocent_Contig_8133 112 . G A 77.5234 . AB=0.140625;ABP=74.8046;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X;DP=215;DPB=215;DPRA=1.27152;EPP=22.5536;EPPR=448.162;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=312;QR=6495;RO=205;RPL=0;RPP=22.5536;RPPR=448.162;RPR=9;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=448.162;SRR=205;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:64:55,9:55:1699:9:312:-9.15028,0,-133.909 0/0:76:76,0:76:2446:0:0:0,-22.8783,-220.4 0/0:50:50,0:50:1591:0:0:0,-15.0515,-143.468 0/0:25:24,0:24:759:0:0:0,-7.22472,-68.4199 dDocent_Contig_8134 119 . C A 628.594 . AB=0.4;ABP=9.09042;AC=2;AF=0.25;AN=8;AO=28;CIGAR=1X;DP=88;DPB=88;DPRA=3.88889;EPP=63.8115;EPPR=133.299;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=963;QR=2004;RO=60;RPL=0;RPP=63.8115;RPPR=133.299;RPR=28;RUN=1;SAF=0;SAP=63.8115;SAR=28;SRF=0;SRP=133.299;SRR=60;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:3:3,0:3:101:0:0:0,-0.90309,-9.4236 0/1:52:28,24:28:959:24:821:-58.5464,0,-70.9665 0/1:18:14,4:14:482:4:142:-7.71073,0,-38.2901 0/0:15:15,0:15:462:0:0:0,-4.51545,-41.8739 dDocent_Contig_8135 10 . C T 125.458 . AB=0.272727;ABP=12.8806;AC=2;AF=0.25;AN=8;AO=7;CIGAR=2X;DP=79;DPB=79;DPRA=0.607143;EPP=18.2106;EPPR=155.013;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=283;QR=2810;RO=70;RPL=0;RPP=18.2106;RPPR=155.013;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=70;SRP=155.013;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:29:26,1:26:1040:1:41:0,-4.41945,-89.8367 0|0:28:28,0:28:1129:0:0:0,-8.42884,-101.89 0|1:14:12,2:12:481:2:82:-3.56526,0,-39.4257 0|1:8:4,4:4:160:4:160:-12.3756,0,-12.3756 dDocent_Contig_8136 11 . C T 340.785 . AB=0.143678;ABP=194.899;AC=2;AF=0.25;AN=8;AO=25;CIGAR=1X;DP=475;DPB=475;DPRA=0.578073;EPP=57.2971;EPPR=973.658;GTI=0;LEN=1;MEANALT=1;MQM=59.52;MQMR=57.5034;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.979866;PAO=0;PQA=0;PQR=0;PRO=0;QA=991;QR=17680;RO=447;RPL=0;RPP=57.2971;RPPR=973.658;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=447;SRP=973.658;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:158:155,0:155:6165:0:0:0,-46.6596,-554.181 0/0:143:143,0:143:5679:0:0:0,-43.0473,-497.01 0/1:106:94,12:94:3679:12:487:-12.2723,0,-292.869 0/1:68:55,13:55:2157:13:504:-25.2041,0,-171.64 dDocent_Contig_8137 27 . T C 32.7803 . AB=0.222222;ABP=9.04217;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=89;DPB=89;DPRA=1.17073;EPP=13.8677;EPPR=185.414;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=201;QR=3327;RO=84;RPL=0;RPP=13.8677;RPPR=185.414;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=84;SRP=185.414;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:39:36,3:36:1418:3:120:0,-0.55286,-116.687 0/0:31:31,0:31:1233:0:0:0,-9.33193,-111.244 0/0:10:10,0:10:394:0:0:0,-3.0103,-35.8145 0/1:9:7,2:7:282:2:81:-4.97646,0,-23.0428 dDocent_Contig_8138 98 . N A 65.5375 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=69;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:69:-6.55266,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_8139 17 . C T 47.6892 . AB=0.10101;ABP=139.901;AC=1;AF=0.125;AN=8;AO=21;CIGAR=1X2M1X;DP=330;DPB=330;DPRA=0;EPP=48.6112;EPPR=643.595;GTI=0;LEN=1;MEANALT=2;MQM=47.0476;MQMR=59.9797;NS=4;NUMALT=2;ODDS=0;PAIRED=0.238095;PAIREDR=0.586441;PAO=0;PQA=0;PQR=0;PRO=0;QA=822;QR=11772;RO=295;RPL=0;RPP=48.6112;RPPR=643.595;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=295;SRP=643.595;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:99:82,10,3:82:3268:10,3:389,121:-6.16685,0,-266.086,-20.8741,-259.122,-289.085 0|0:123:113,8,2:113:4482:8,2:320,76:0,-8.39226,-374.904,-27.7858,-371.08,-396.094 0|0:75:69,1,5:69:2779:1,5:32,187:0,-18.3344,-247.104,-5.40363,-232.097,-233.038 0|0:33:31,2,0:31:1243:2,0:81,0:0,-2.4107,-104.621,-9.33193,-105.223,-111.748 dDocent_Contig_8140 22 . A T 1941.8 . AB=0.446541;ABP=6.95719;AC=4;AF=0.5;AN=8;AO=71;CIGAR=1X2M1X3M;DP=159;DPB=159;DPRA=0;EPP=82.5596;EPPR=146.327;GTI=0;LEN=1;MEANALT=2.25;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=2.77556e-17;PAIRED=0.859155;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2695;QR=2578;RO=66;RPL=0;RPP=157.185;RPPR=146.327;RPR=71;RUN=1;SAF=61;SAP=82.5596;SAR=10;SRF=66;SRP=146.327;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:46:26,2,18:26:1023:2,18:79,680:-47.8953,-49.2194,-132.778,0,-77.6485,-78.731 0|1:48:13,10,23:13:506:10,23:396,876:-67.9379,-39.2562,-77.8346,0,-8.99071,-34.6621 0|1:48:25,7,15:25:973:7,15:248,558:-38.1518,-25.4812,-103.344,0,-59.7881,-75.4675 0|1:17:2,0,15:2:76:0,15:0,581:-47.5133,-48.1153,-54.3475,0,-6.61275,-2.0973 dDocent_Contig_8141 7 . T C 295.944 . AB=0.170732;ABP=118.84;AC=4;AF=0.5;AN=8;AO=21;CIGAR=1X;DP=123;DPB=123;DPRA=0;EPP=48.6112;EPPR=224.5;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=806;QR=3900;RO=102;RPL=0;RPP=48.6112;RPPR=224.5;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=102;SRP=224.5;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:41:35,6:35:1340:6:227:-8.45021,0,-108.543 0/1:50:43,7:43:1642:7:269:-9.52269,0,-132.994 0/1:22:19,3:19:733:3:117:-4.28772,0,-59.6783 0/1:10:5,5:5:185:5:193:-14.7312,0,-13.9973 dDocent_Contig_8142 149 . G A 837.469 . AB=0.123288;ABP=92.9925;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X1M5I2M2X3M7I3M1X4M;DP=83;DPB=113.588;DPRA=0;EPP=22.5536;EPPR=63.8115;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=350;QR=1083;RO=28;RPL=0;RPP=22.5536;RPPR=63.8115;RPR=9;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=63.8115;SRR=28;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:29:14,5,2,6:14:528:5,2,6:198,80,222:-13.9411,-1.84821,-43.6167,-11.5616,-38.5292,-54.229,0,-26.9635,-36.6733,-41.4594 0|0:38:5,3,5,22:5:200:3,5,22:116,180,830:-66.5144,-58.4906,-74.0663,-53.3411,-60.2912,-68.3144,0,-6.9541,-1.81208,-9.8601 0|1:6:5,1,0,0:5:196:1,0,0:36,0,0:-1.79209,0,-16.2092,-3.29724,-16.5102,-19.4423,-3.29724,-16.5102,-19.4423,-19.4423 0|0:10:4,0,3,3:4:159:0,3,3:0,119,112:-8.60353,-9.80765,-22.9037,0,-13.1049,-12.2018,-0.650108,-13.7417,-3.94602,-12.8386 dDocent_Contig_8143 107 . N A 104.487 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=105;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:70:-6.6474,-0.60206,0 1/1:1:0,1:0:0:1:35:-3.49863,-0.30103,0 dDocent_Contig_8144 8 . A G 2422.14 . AB=0.12069;ABP=147.975;AC=0;AF=0;AN=8;AO=14;CIGAR=2X;DP=176;DPB=176;DPRA=0;EPP=33.4109;EPPR=144.156;GTI=0;LEN=1;MEANALT=3.5;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=452;QR=2476;RO=65;RPL=0;RPP=33.4109;RPPR=144.156;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=65;SRP=144.156;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:50:29,7,0,14:29:1108:7,0,14:264,0,545:-36.0711,-23.1698,-111.97,-44.801,-114.077,-135.712,0,-69.2822,-90.9165,-86.702 0|0:76:19,2,9,45:19:728:2,9,45:78,288,1728:-136.168,-135.475,-194.625,-118.702,-172.039,-175.742,0,-53.3654,-36.6016,-46.2326 0|0:40:15,1,5,19:15:562:1,5,19:39,164,734:-55.8055,-57.1145,-102.841,-47.0841,-89.9002,-91.6011,0,-42.8459,-32.8159,-40.3335 0|0:10:2,1,0,7:2:78:1,0,7:39,0,270:-21.5671,-18.9628,-25.0745,-22.1692,-25.3755,-28.5817,0,-3.20588,-6.41176,-4.30455 dDocent_Contig_8145 40 . T A 1808.7 . AB=0.297143;ABP=65.5611;AC=4;AF=0.5;AN=8;AO=52;CIGAR=1M1D1M1X4M1X;DP=175;DPB=163.333;DPRA=0;EPP=115.927;EPPR=155.013;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2035;QR=2771;RO=70;RPL=0;RPP=115.927;RPPR=155.013;RPR=52;RUN=1;SAF=52;SAP=115.927;SAR=0;SRF=70;SRP=155.013;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:60:17,16,27:17:674:16,27:628,1069:-82.8662,-36.3361,-86.9973,0,-3.83255,-47.3517 0|1:87:37,29,21:37:1475:29,21:1153,808:-83.7993,0,-112.744,-28.6173,-55.1532,-143.761 0|1:25:15,7,3:15:582:7,3:278,117:-18.3767,0,-45.7077,-13.2768,-38.1971,-60.1841 0|1:3:1,1,1:1:40:1,1:38,41:-3.09792,-0.297298,-3.28641,0,-0.19841,-3.00397 dDocent_Contig_8146 20 . T C 1356.82 . AB=0.0571429;ABP=122.255;AC=0;AF=0;AN=8;AO=4;CIGAR=1X1M3D4M;DP=161;DPB=154.333;DPRA=0;EPP=11.6962;EPPR=204.957;GTI=0;LEN=1;MEANALT=4;MQM=59.5;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=160;QR=3584;RO=93;RPL=0;RPP=11.6962;RPPR=204.957;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=93;SRP=204.957;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:39:29,0,10,0:29:1119:0,10,0:0,398,0:-24.4366,-33.1665,-125.053,0,-92.2806,-89.2703,-33.1665,-125.053,-92.2806,-125.053 0|0:70:35,4,25,5:35:1347:4,25,5:160,984,186:-70.4073,-67.7645,-177.151,0,-97.422,-103.075,-65.7231,-163.134,-95.3794,-174.807 0|0:28:14,0,3,11:14:532:0,3,11:0,120,413:-29.5961,-33.8105,-77.4397,-23.9206,-67.5527,-66.6496,0,-43.6131,-33.725,-40.3018 0|0:24:15,0,7,2:15:586:0,7,2:0,281,80:-18.6396,-23.1551,-71.3245,0,-48.1677,-46.0605,-16.5652,-64.7339,-41.5765,-64.1318 dDocent_Contig_8148 13 . G A 124.888 . AB=0.0571429;ABP=62.6327;AC=0;AF=0;AN=8;AO=2;CIGAR=2X;DP=163;DPB=163;DPRA=5;EPP=7.35324;EPPR=315.702;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=59.9375;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=80;QR=5706;RO=144;RPL=0;RPP=7.35324;RPPR=315.702;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=144;SRP=315.702;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:77:67,0,10:67:2619:0,10:0,407:-13.8113,-33.9803,-249.251,0,-215.675,-212.665 0|0:44:40,0,4:40:1610:0,4:0,163:-1.81311,-13.8543,-146.537,0,-133.089,-131.885 0|0:35:30,2,3:30:1193:2,3:80,122:-1.0363,-3.47989,-101.086,0,-91.6242,-97.3112 0|0:7:7,0,0:7:284:0,0:0,0:0,-2.10721,-25.9262,-2.10721,-25.9262,-25.9262 dDocent_Contig_8149 7 . T C 105.19 . AB=0.0532787;ABP=425.949;AC=0;AF=0;AN=8;AO=15;CIGAR=1X1M1X;DP=481;DPB=480;DPRA=0.75;EPP=35.5824;EPPR=936.743;GTI=0;LEN=1;MEANALT=3.66667;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=0.997674;PAO=0;PQA=0;PQR=0;PRO=0;QA=576;QR=16443;RO=430;RPL=0;RPP=35.5824;RPPR=936.743;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=430;SRP=936.743;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:148:143,0,2,0:143:5471:0,2,0:0,78,0:0,-43.0473,-492,-36.6355,-485.588,-484.986,-43.0473,-492,-485.588,-492 0|0:197:168,12,0,16:168:6439:12,0,16:459,0,623:-0.636788,-13.5466,-538.409,-51.2098,-542.022,-579.687,0,-490.817,-528.482,-523.665 0|0:89:85,2,1,0:85:3237:2,1,0:78,39,0:0,-19.1758,-284.086,-22.3817,-281.482,-287.593,-25.5875,-284.688,-287.894,-291.1 0|0:47:34,1,7,2:34:1296:1,7,2:39,273,78:-12.2133,-19.2419,-125.255,0,-103.114,-104.213,-16.0354,-119.144,-99.9075,-121.748 dDocent_Contig_8150 115 . C T 215.874 . AB=0.270833;ABP=24.906;AC=3;AF=0.375;AN=8;AO=14;CIGAR=1X;DP=76;DPB=76;DPRA=0;EPP=33.4109;EPPR=135.47;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=483;QR=2017;RO=61;RPL=0;RPP=33.4109;RPPR=135.47;RPR=14;RUN=1;SAF=0;SAP=33.4109;SAR=14;SRF=0;SRP=135.47;SRR=61;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:28:26,1:26:886:1:34:0,-4.93384,-76.7793 0/1:9:7,2:7:224:2:70:-3.93813,0,-17.7642 0/1:25:19,6:19:629:6:208:-11.5339,0,-49.395 0/1:14:9,5:9:278:5:171:-11.512,0,-21.1069 dDocent_Contig_8151 29 . T C 3001.39 . AB=0.6125;ABP=20.5992;AC=4;AF=0.5;AN=8;AO=98;CIGAR=1X;DP=160;DPB=160;DPRA=0;EPP=215.815;EPPR=137.642;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3939;QR=2467;RO=62;RPL=0;RPP=215.815;RPPR=137.642;RPR=98;RUN=1;SAF=98;SAP=215.815;SAR=0;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:52:22,30:22:866:30:1202:-92.7976,0,-62.5957 0/1:65:29,36:29:1154:36:1443:-110.55,0,-84.563 0/1:27:3,24:3:120:24:973:-79.7396,0,-3.0595 0/1:16:8,8:8:327:8:321:-24.4406,0,-24.9836 dDocent_Contig_8152 49 . A T 133.501 . AB=0.388889;ABP=4.9405;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=61;DPB=61;DPRA=1.25581;EPP=18.2106;EPPR=120.27;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.857143;PAIREDR=0.944444;PAO=0;PQA=0;PQR=0;PRO=0;QA=224;QR=2041;RO=54;RPL=0;RPP=18.2106;RPPR=120.27;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:19:19,0:19:710:0:0:0,-5.71957,-64.2109 0/0:13:13,0:13:477:0:0:0,-3.91339,-43.2645 0/1:18:11,7:11:419:7:224:-15.0491,0,-32.6375 0/0:11:11,0:11:435:0:0:0,-3.31133,-39.5037 dDocent_Contig_8153 67 . A G 33.1437 . AB=0.285714;ABP=5.80219;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X;DP=94;DPB=94;DPRA=0.241379;EPP=7.35324;EPPR=202.786;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=75;QR=3359;RO=92;RPL=2;RPP=7.35324;RPPR=202.786;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=92;SRP=202.786;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:33:33,0:33:1224:0:0:0,-9.93399,-110.455 0/0:37:37,0:37:1334:0:0:0,-11.1381,-120.348 0/0:17:17,0:17:638:0:0:0,-5.11751,-57.7537 0/1:7:5,2:5:163:2:75:-5.01313,0,-12.8795 dDocent_Contig_8154 12 . T C 1271.84 . AB=0.160714;ABP=114.996;AC=1;AF=0.125;AN=8;AO=18;CIGAR=1X3M8I2M;DP=112;DPB=223;DPRA=0;EPP=42.0968;EPPR=68.1545;GTI=0;LEN=1;MEANALT=4;MQM=51.4444;MQMR=60;NS=4;NUMALT=4;ODDS=0;PAIRED=0.611111;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=695;QR=1176;RO=30;RPL=0;RPP=42.0968;RPPR=68.1545;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:41:8,8,1,21,2:8:318:8,1,21,2:310,37,751,73:-58.8098,-37.0902,-60.8732,-58.1985,-60.2621,-84.0867,0,-2.07547,-23.1746,-19.8717,-55.2534,-57.3172,-78.4235,-20.2306,-80.8407 0|0:26:3,3,1,13,6:3:120:3,1,13,6:115,39,465,211:-44.2731,-36.2734,-45.261,-41.9688,-42.957,-51.5582,-7.26625,-8.26039,-13.9532,-13.2475,-28.0032,-28.9929,-34.6873,0,-36.0882 0|1:25:11,6,1,5,2:11:427:6,1,5,2:232,38,178,75:-15.7547,0,-33.2937,-15.949,-31.9832,-50.7406,-4.56884,-20.6007,-36.5411,-38.1521,-12.923,-28.9574,-44.8993,-33.5157,-47.4137 0|0:20:8,1,5,6,0:8:311:1,5,6,0:38,196,222,0:-15.7427,-15.0344,-40.2941,-2.02383,-24.4736,-26.0849,0,-22.4405,-9.43624,-23.7501,-18.1509,-40.5951,-27.5901,-25.5563,-43.7115 dDocent_Contig_8156 11 . G A 788.517 . AB=0.25;ABP=81.1833;AC=4;AF=0.5;AN=8;AO=36;CIGAR=1X;DP=144;DPB=144;DPRA=0;EPP=81.1833;EPPR=237.529;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.9907;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1424;QR=4186;RO=108;RPL=0;RPP=81.1833;RPPR=237.529;RPR=36;RUN=1;SAF=36;SAP=81.1833;SAR=0;SRF=108;SRP=237.529;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:38:26,12:26:1018:12:485:-32.5623,0,-80.4733 0/1:61:53,8:53:2044:8:319:-10.7106,0,-165.794 0/1:27:14,13:14:522:13:501:-37.3008,0,-39.1785 0/1:18:15,3:15:602:3:119:-5.67596,0,-49.0972 dDocent_Contig_8157 22 . A T 68.8734 . AB=0.15;ABP=45.5712;AC=2;AF=0.25;AN=8;AO=6;CIGAR=1X;DP=139;DPB=139;DPRA=0.40404;EPP=16.0391;EPPR=291.816;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=241;QR=5325;RO=133;RPL=0;RPP=16.0391;RPPR=291.816;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=133;SRP=291.816;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:37:37,0:37:1503:0:0:0,-11.1381,-135.508 0/0:62:62,0:62:2461:0:0:0,-18.6639,-221.64 0/1:34:29,5:29:1157:5:204:-8.50901,0,-94.1774 0/1:6:5,1:5:204:1:37:-1.89165,0,-16.9379 dDocent_Contig_8158 52 . T G 1401.36 . AB=0.443478;ABP=6.20142;AC=3;AF=0.375;AN=8;AO=53;CIGAR=1X;DP=147;DPB=147;DPRA=0;EPP=118.098;EPPR=204.957;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2065;QR=3575;RO=93;RPL=53;RPP=118.098;RPPR=204.957;RPR=0;RUN=1;SAF=53;SAP=118.098;SAR=0;SRF=93;SRP=204.957;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:37:32,5:32:1253:5:204:-7.60592,0,-101.917 0/0:32:30,2:30:1145:2:73:0,-2.70377,-96.4183 0/1:46:22,23:22:854:23:924:-69.5094,0,-63.2227 0/1:32:9,23:9:323:23:864:-68.4184,0,-19.7738 dDocent_Contig_8159 21 . A T 225.447 . AB=0.22;ABP=37.059;AC=2;AF=0.25;AN=8;AO=11;CIGAR=1X;DP=87;DPB=87;DPRA=1.35135;EPP=26.8965;EPPR=168.042;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=447;QR=3058;RO=76;RPL=0;RPP=26.8965;RPPR=168.042;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=76;SRP=168.042;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:19:19,0:19:769:0:0:0,-5.71957,-69.5297 0/1:45:36,9:36:1448:9:365:-19.6681,0,-117.022 0/1:5:3,2:3:122:2:82:-6.27453,0,-9.86734 0/0:18:18,0:18:719:0:0:0,-5.41854,-65.0318 dDocent_Contig_8160 31 . G A 811.993 . AB=0.0816327;ABP=77.5051;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X2M1X4M7D3M1X4M;DP=95;DPB=80.087;DPRA=0;EPP=11.6962;EPPR=96.3836;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=4;NUMALT=4;ODDS=0;PAIRED=0.5;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=153;QR=1642;RO=43;RPL=0;RPP=11.6962;RPPR=96.3836;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:41:11,2,0,18,9:11:424:2,0,18,9:76,0,678,331:-52.2476,-49.3254,-83.5413,-55.5589,-84.1433,-90.3765,0,-28.5892,-34.8226,-29.404,-28.5006,-57.0853,-63.3184,-7.76749,-60.6091 0|0:24:20,0,0,3,0:20:751:0,0,3,0:0,0,117,0:-3.82881,-9.84941,-71.4153,-9.84941,-71.4153,-71.4153,0,-61.7946,-61.7946,-60.8915,-9.84941,-71.4153,-71.4153,-61.7946,-71.4153 0|0:22:8,0,2,10,0:8:310:0,2,10,0:0,76,363,0:-27.301,-29.7093,-55.1962,-23.4689,-48.9607,-48.3586,0,-25.5494,-19.3098,-22.5391,-29.7093,-55.1962,-48.9607,-25.5494,-55.1962 0|1:8:4,2,0,0,2:4:157:2,0,0,2:77,0,0,37:-5.21812,0,-12.4486,-6.42224,-13.0507,-19.3884,-6.42224,-13.0507,-19.3884,-19.3884,-3.79447,-10.3921,-16.712,-16.712,-16.1099 dDocent_Contig_8162 54 . C A 91.6634 . AB=0.162162;ABP=39.6906;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=108;DPB=108;DPRA=1.56338;EPP=16.0391;EPPR=224.5;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=237;QR=3966;RO=102;RPL=6;RPP=16.0391;RPPR=224.5;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=102;SRP=224.5;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:37:31,6:31:1247:6:237:-10.5643,0,-101.363 0/0:28:28,0:28:1035:0:0:0,-8.42884,-93.4102 0/0:24:24,0:24:958:0:0:0,-7.22472,-86.5188 0/0:19:19,0:19:726:0:0:0,-5.71957,-65.6451 dDocent_Contig_8163 44 . C T 80.0513 . AB=0;ABP=0;AC=2;AF=0.25;AN=8;AO=2;CIGAR=1X;DP=36;DPB=36;DPRA=0.176471;EPP=7.35324;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=78;QR=1383;RO=34;RPL=0;RPP=7.35324;RPPR=76.8404;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:78:-7.40278,-0.60206,0 0/0:9:9,0:9:363:0:0:0,-2.70927,-33.0332 0/0:19:19,0:19:776:0:0:0,-5.71957,-70.158 0/0:6:6,0:6:244:0:0:0,-1.80618,-22.3388 dDocent_Contig_8165 26 . T C 876.495 . AB=0.568182;ABP=4.78696;AC=5;AF=0.625;AN=8;AO=29;CIGAR=1X;DP=48;DPB=48;DPRA=0;EPP=65.983;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1164;QR=759;RO=19;RPL=0;RPP=65.983;RPPR=44.2683;RPR=29;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:9,19:9:353:19:767:-60.922,0,-23.6979 0/1:10:5,5:5:204:5:200:-15.3687,0,-15.7337 0/1:6:5,1:5:202:1:41:-2.28839,0,-16.7553 1/1:4:0,4:0:0:4:156:-14.4157,-1.20412,0 dDocent_Contig_8166 79 . C A 179.057 . AB=0.25;ABP=22.5536;AC=1;AF=0.125;AN=8;AO=10;CIGAR=1X;DP=114;DPB=114;DPRA=1.59091;EPP=24.725;EPPR=228.843;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.961538;PAO=0;PQA=0;PQR=0;PRO=0;QA=348;QR=3704;RO=104;RPL=10;RPP=24.725;RPPR=228.843;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=104;SRP=228.843;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:27,9:27:932:9:331:-19.3036,0,-73.3473 0/0:36:36,0:36:1303:0:0:0,-10.8371,-117.565 0/0:34:33,1:33:1189:1:17:0,-8.53504,-105.612 0/0:8:8,0:8:280:0:0:0,-2.40824,-25.5386 dDocent_Contig_8167 12 . G A 388.281 . AB=0.405405;ABP=5.88603;AC=3;AF=0.375;AN=8;AO=15;CIGAR=1X;DP=44;DPB=44;DPRA=1.7619;EPP=35.5824;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=53.4667;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=604;QR=1167;RO=29;RPL=0;RPP=35.5824;RPPR=65.983;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:7:7,0:7:285:0:0:0,-2.10721,-26.0244 0/1:14:2,12:2:82:12:484:-39.4944,0,-3.56526 0/1:17:15,2:15:602:2:80:-2.44214,0,-49.3983 0/1:6:5,1:5:198:1:40:-2.1895,0,-16.3903 dDocent_Contig_8168 107 . N G 293.436 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=10;CIGAR=1X;DP=10;DPB=10;DPRA=0;EPP=24.725;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=316;QR=0;RO=0;RPL=0;RPP=24.725;RPPR=0;RPR=10;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:9:0,9:0:0:9:287:-26.1415,-2.70927,0 1/1:1:0,1:0:0:1:29:-2.89966,-0.30103,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_8169 29 . A G 114.531 . AB=0.15;ABP=66.8516;AC=3;AF=0.375;AN=8;AO=10;CIGAR=1X;DP=97;DPB=97;DPRA=0;EPP=24.725;EPPR=191.928;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.965517;PAO=0;PQA=0;PQR=0;PRO=0;QA=408;QR=3452;RO=87;RPL=0;RPP=24.725;RPPR=191.928;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=87;SRP=191.928;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:27,3:27:1063:3:122:-2.34159,0,-86.9297 0/0:37:36,1:36:1427:1:41:0,-7.04354,-124.584 0/1:21:19,2:19:762:2:81:-1.3641,0,-62.5806 0/1:9:5,4:5:200:4:164:-12.4406,0,-15.6698 dDocent_Contig_8170 26 . C T 1936.83 . AB=0.5;ABP=3.0103;AC=4;AF=0.5;AN=8;AO=66;CIGAR=1X;DP=132;DPB=132;DPRA=0;EPP=146.327;EPPR=146.327;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2661;QR=2679;RO=66;RPL=0;RPP=146.327;RPPR=146.327;RPR=66;RUN=1;SAF=66;SAP=146.327;SAR=0;SRF=66;SRP=146.327;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:51:32,19:32:1295:19:764:-53.7293,0,-101.459 0/1:32:19,13:19:775:13:525:-37.9641,0,-60.4355 0/1:27:10,17:10:404:17:682:-53.5817,0,-28.592 0/1:22:5,17:5:205:17:690:-55.8062,0,-12.2123 dDocent_Contig_8171 39 . G C 103.35 . AB=0.571429;ABP=3.32051;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=46;DPB=46;DPRA=0.538462;EPP=11.6962;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.690476;PAO=0;PQA=0;PQR=0;PRO=0;QA=153;QR=1527;RO=42;RPL=0;RPP=11.6962;RPPR=94.2121;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:12:12,0:12:424:0:0:0,-3.61236,-38.4844 0/1:7:3,4:3:112:4:153:-12.034,0,-8.33942 0/0:13:13,0:13:479:0:0:0,-3.91339,-43.4486 0/0:14:14,0:14:512:0:0:0,-4.21442,-46.4128 dDocent_Contig_8172 24 . A T 331.807 . AB=0.146199;ABP=188.932;AC=4;AF=0.5;AN=8;AO=25;CIGAR=1X;DP=171;DPB=171;DPRA=0;EPP=57.2971;EPPR=320.045;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=0.767123;PAO=0;PQA=0;PQR=0;PRO=0;QA=1006;QR=5853;RO=146;RPL=0;RPP=57.2971;RPPR=320.045;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=146;SRP=320.045;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:43:36,7:36:1445:7:283:-12.8993,0,-117.354 0/1:87:79,8:79:3167:8:320:-2.97716,0,-258.911 0/1:26:20,6:20:800:6:239:-14.0564,0,-64.4905 0/1:15:11,4:11:441:4:164:-10.6344,0,-35.529 dDocent_Contig_8173 98 . N C 131.654 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=130;QR=0;RO=0;RPL=4;RPP=11.6962;RPPR=0;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:1:0,1:0:0:1:34:-3.39891,-0.30103,0 1/1:1:0,1:0:0:1:34:-3.39891,-0.30103,0 1/1:2:0,2:0:0:2:62:-5.88849,-0.60206,0 dDocent_Contig_8174 191 . C G 386.433 . AB=0.326087;ABP=15.095;AC=1;AF=0.125;AN=8;AO=20;CIGAR=1X;DP=148;DPB=148;DPRA=2.75;EPP=46.4397;EPPR=280.959;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=776;QR=4966;RO=128;RPL=20;RPP=46.4397;RPPR=280.959;RPR=0;RUN=1;SAF=0;SAP=46.4397;SAR=20;SRF=0;SRP=280.959;SRR=128;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:46:31,15:31:1212:15:595:-40.0412,0,-95.5065 0/0:51:47,4:47:1812:4:140:0,-2.41048,-150.358 0/0:35:34,1:34:1329:1:41:0,-6.44148,-115.785 0/0:16:16,0:16:613:0:0:0,-4.81648,-55.5039 dDocent_Contig_8175 9 . A G 2006.22 . AB=0.255618;ABP=187.683;AC=4;AF=0.5;AN=8;AO=91;CIGAR=1X;DP=356;DPB=356;DPRA=0;EPP=200.614;EPPR=578.45;GTI=0;LEN=1;MEANALT=1;MQM=59.6703;MQMR=56.4566;NS=4;NUMALT=1;ODDS=0;PAIRED=0.978022;PAIREDR=0.943396;PAO=0;PQA=0;PQR=0;PRO=0;QA=3492;QR=10211;RO=265;RPL=0;RPP=200.614;RPPR=578.45;RPR=91;RUN=1;SAF=91;SAP=200.614;SAR=0;SRF=265;SRP=578.45;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:135:102,33:102:3945:33:1265:-73.5019,0,-304.281 0/1:110:89,21:89:3437:21:802:-39.0183,0,-272.744 0/1:72:50,22:50:1899:22:850:-55.1484,0,-147.698 0/1:39:24,15:24:930:15:575:-40.3515,0,-72.2222 dDocent_Contig_8176 29 . C A 4201.01 . AB=0.649533;ABP=44.5727;AC=4;AF=0.5;AN=8;AO=139;CIGAR=1X;DP=214;DPB=214;DPRA=0;EPP=304.845;EPPR=165.871;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.96;PAO=0;PQA=0;PQR=0;PRO=0;QA=5454;QR=3008;RO=75;RPL=0;RPP=304.845;RPPR=165.871;RPR=139;RUN=1;SAF=139;SAP=304.845;SAR=0;SRF=75;SRP=165.871;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:78:24,54:24:958:54:2100:-165.717,0,-63.0355 0/1:64:25,39:25:1002:39:1545:-120.033,0,-71.2024 0/1:45:17,28:17:682:28:1114:-87.0025,0,-48.1604 0/1:27:9,18:9:366:18:695:-54.7468,0,-25.1771 dDocent_Contig_8177 43 . A G 105.325 . AB=0.163265;ABP=51.2702;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=128;DPB=128;DPRA=1.86076;EPP=20.3821;EPPR=263.587;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.783333;PAO=0;PQA=0;PQR=0;PRO=0;QA=296;QR=4694;RO=120;RPL=0;RPP=20.3821;RPPR=263.587;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=120;SRP=263.587;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:31:31,0:31:1208:0:0:0,-9.33193,-108.987 0/0:23:23,0:23:930:0:0:0,-6.92369,-84.0022 0/1:49:41,8:41:1616:8:296:-12.2314,0,-130.927 0/0:25:25,0:25:940:0:0:0,-7.52575,-84.8891 dDocent_Contig_8178 98 . N G 286.037 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=9;CIGAR=1X;DP=9;DPB=9;DPRA=0;EPP=22.5536;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=307;QR=0;RO=0;RPL=9;RPP=22.5536;RPPR=0;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:5:0,5:0:0:5:171:-15.7266,-1.50515,0 1/1:4:0,4:0:0:4:136:-12.5759,-1.20412,0 ./.:.:.:.:.:.:.:. dDocent_Contig_8179 16 . T G 218.803 . AB=0.2;ABP=46.0055;AC=1;AF=0.125;AN=8;AO=11;CIGAR=1X;DP=79;DPB=79;DPRA=6.875;EPP=26.8965;EPPR=150.67;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=442;QR=2710;RO=68;RPL=0;RPP=26.8965;RPPR=150.67;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=68;SRP=150.67;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:18:18,0:18:732:0:0:0,-5.41854,-66.2039 0/1:55:44,11:44:1733:11:442:-23.5787,0,-139.631 0/0:5:5,0:5:204:0:0:0,-1.50515,-18.744 0/0:1:1,0:1:41:0:0:0,-0.30103,-4.09457 dDocent_Contig_8180 20 . C G 667.571 . AB=0.0810811;ABP=59.4099;AC=0;AF=0;AN=8;AO=3;CIGAR=2M1X2M;DP=58;DPB=84;DPRA=0;EPP=9.52472;EPPR=65.983;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=111;QR=1133;RO=29;RPL=0;RPP=9.52472;RPPR=65.983;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:18:10,8,0:10:391:8,0:319,0:-23.6585,0,-30.127,-26.6688,-32.5353,-58.8092 0|0:19:9,8,2:9:356:8,2:312,70:-22.968,0,-26.9273,-19.9925,-23.6511,-48.6917 0|0:18:8,9,1:8:305:9,1:329,41:-24.4272,0,-22.283,-23.4469,-21.605,-48.1709 0|0:3:2,1,0:2:81:1,0:40,0:-3.09259,0,-6.78264,-3.69465,-7.08367,-10.3771 dDocent_Contig_8181 58 . C T 87.9921 . AB=0.227273;ABP=17.2236;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=66;DPB=66;DPRA=1.5;EPP=13.8677;EPPR=135.47;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=183;QR=2427;RO=61;RPL=5;RPP=13.8677;RPPR=135.47;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=61;SRP=135.47;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:17,5:17:676:5:183:-10.1972,0,-54.5416 0/0:17:17,0:17:689:0:0:0,-5.11751,-62.3391 0/0:17:17,0:17:660:0:0:0,-5.11751,-59.7276 0/0:10:10,0:10:402:0:0:0,-3.0103,-36.5401 dDocent_Contig_8182 15 . T C 267.163 . AB=0.233333;ABP=40.0701;AC=3;AF=0.375;AN=8;AO=14;CIGAR=1X;DP=76;DPB=76;DPRA=1.25;EPP=33.4109;EPPR=137.642;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.6774;NS=4;NUMALT=1;ODDS=0;PAIRED=0.857143;PAIREDR=0.83871;PAO=0;PQA=0;PQR=0;PRO=0;QA=545;QR=2264;RO=62;RPL=0;RPP=33.4109;RPPR=137.642;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:9,4:9:315:4:155:-10.4105,0,-24.7504 0/1:23:16,7:16:581:7:267:-17.463,0,-45.6909 0/1:24:21,3:21:780:3:123:-4.24007,0,-63.2975 0/0:16:16,0:16:588:0:0:0,-4.81648,-53.2486 dDocent_Contig_8183 25 . A T 53.0489 . AB=0.125;ABP=51.8684;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=91;DPB=91;DPRA=2.35294;EPP=13.8677;EPPR=189.757;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=204;QR=3395;RO=86;RPL=0;RPP=13.8677;RPPR=189.757;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=86;SRP=189.757;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:40:35,5:35:1374:5:204:-6.70283,0,-111.87 0/0:23:23,0:23:914:0:0:0,-6.92369,-82.5656 0/0:11:11,0:11:442:0:0:0,-3.31133,-40.1355 0/0:17:17,0:17:665:0:0:0,-5.11751,-60.1804 dDocent_Contig_8184 112 . T C 244.924 . AB=0.2375;ABP=50.8913;AC=4;AF=0.5;AN=8;AO=19;CIGAR=1X;DP=80;DPB=80;DPRA=0;EPP=44.2683;EPPR=135.47;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=600;QR=2082;RO=61;RPL=0;RPP=44.2683;RPPR=135.47;RPR=19;RUN=1;SAF=0;SAP=44.2683;SAR=19;SRF=0;SRP=135.47;SRR=61;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:35:30,5:30:1037:5:156:-3.81215,0,-83.1055 0/1:32:23,9:23:766:9:299:-17.6011,0,-59.6167 0/1:9:7,2:7:244:2:42:-1.27943,0,-19.5908 0/1:4:1,3:1:35:3:103:-8.40585,0,-2.29451 dDocent_Contig_8185 61 . T A 42.6026 . AB=0.133333;ABP=38.0434;AC=2;AF=0.25;AN=8;AO=4;CIGAR=1X;DP=50;DPB=50;DPRA=1.5;EPP=11.6962;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=162;QR=1806;RO=46;RPL=4;RPP=11.6962;RPPR=102.898;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:16,3:16:632:3:122:-5.65292,0,-51.4963 0/1:11:10,1:10:400:1:40:-0.684349,0,-33.0491 0/0:15:15,0:15:584:0:0:0,-4.51545,-52.8916 0/0:5:5,0:5:190:0:0:0,-1.50515,-17.4642 dDocent_Contig_8187 36 . T C 1554.59 . AB=0.198068;ABP=166.92;AC=3;AF=0.375;AN=8;AO=41;CIGAR=5M1X9M1X1M;DP=220;DPB=223;DPRA=0;EPP=92.0407;EPPR=270.101;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=4;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1589;QR=4839;RO=123;RPL=0;RPP=92.0407;RPPR=270.101;RPR=41;RUN=1;SAF=41;SAP=92.0407;SAR=0;SRF=123;SRP=270.101;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:86:39,0,14,33,0:39:1530:0,14,33,0:0,540,1234,0:-89.2899,-101.03,-226.863,-56.6857,-182.522,-178.308,0,-125.831,-81.4922,-115.897,-101.03,-226.863,-182.522,-125.831,-226.863 0|1:64:37,0,17,3,6:37:1458:0,17,3,6:0,659,112,240:-43.0091,-54.1472,-174.108,0,-119.97,-114.853,-44.9786,-164.939,-110.802,-164.036,-34.3723,-154.337,-100.199,-145.168,-152.531 0|1:57:40,0,10,5,2:40:1584:0,10,5,2:0,390,192,74:-20.021,-32.0622,-162.445,0,-130.389,-127.379,-16.3024,-146.685,-114.629,-145.18,-26.0107,-156.392,-124.336,-140.632,-155.79 0|1:13:7,4,0,2,0:7:267:4,0,2,0:154,0,77,0:-10.5373,0,-20.6958,-12.6445,-21.8999,-34.5453,-6.32209,-15.5768,-28.2225,-27.6205,-12.6445,-21.8999,-34.5453,-28.2225,-34.5453 dDocent_Contig_8189 26 . C A 787.07 . AB=0.439394;ABP=5.11597;AC=4;AF=0.5;AN=8;AO=29;CIGAR=1X;DP=66;DPB=66;DPRA=0;EPP=65.983;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.724138;PAIREDR=0.756757;PAO=0;PQA=0;PQR=0;PRO=0;QA=1161;QR=1453;RO=37;RPL=0;RPP=65.983;RPPR=83.3548;RPR=29;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:16,6:16:639:6:245:-15.8068,0,-51.2197 0/1:12:6,6:6:244:6:238:-18.1803,0,-18.7263 0/1:10:3,7:3:122:7:284:-22.9237,0,-8.36219 0/1:22:12,10:12:448:10:394:-29.1941,0,-34.0236 dDocent_Contig_8190 114 . A G 419.566 . AB=0.695652;ABP=10.6577;AC=1;AF=0.125;AN=8;AO=16;CIGAR=1X;DP=46;DPB=46;DPRA=3;EPP=37.7539;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=555;QR=1031;RO=30;RPL=0;RPP=37.7539;RPPR=68.1545;RPR=16;RUN=1;SAF=0;SAP=37.7539;SAR=16;SRF=0;SRP=68.1545;SRR=30;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:7,16:7:237:16:555:-43.3544,0,-14.7379 0/0:12:12,0:12:411:0:0:0,-3.61236,-37.3193 0/0:5:5,0:5:175:0:0:0,-1.50515,-16.0937 0/0:6:6,0:6:208:0:0:0,-1.80618,-19.0596 dDocent_Contig_8191 115 . G A 67.226 . AB=0.333333;ABP=5.9056;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=41;DPB=41;DPRA=1.41176;EPP=13.8677;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=40;MQMR=56.6667;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.916667;PAO=0;PQA=0;PQR=0;PRO=0;QA=169;QR=1254;RO=36;RPL=0;RPP=13.8677;RPPR=81.1833;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=81.1833;SRR=36;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:12:11,1:11:385:1:35:0,-0.231658,-31.6056 0/1:12:8,4:8:276:4:134:-8.42092,0,-17.6857 0/0:11:11,0:11:384:0:0:0,-3.31133,-34.8956 0/0:6:6,0:6:209:0:0:0,-1.80618,-19.1511 dDocent_Contig_8192 50 . T A 356.075 . AB=0.1875;ABP=98.0122;AC=3;AF=0.375;AN=8;AO=21;CIGAR=1X2M1D1M;DP=124;DPB=119.8;DPRA=3.11111;EPP=48.6112;EPPR=224.5;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=817;QR=3992;RO=102;RPL=21;RPP=48.6112;RPPR=224.5;RPR=0;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=102;SRP=224.5;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:74:60,14:60:2338:14:548:-27.3877,0,-188.325 0|1:5:3,1:3:120:1:41:-2.64572,0,-9.82368 0|1:33:27,6:27:1074:6:228:-10.9482,0,-87.0211 0|0:12:12,0:12:460:0:0:0,-3.61236,-41.7437 dDocent_Contig_8193 170 . T C 115.59 . AB=0.5;ABP=3.0103;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X1M2D1X;DP=67;DPB=65;DPRA=0.526316;EPP=13.8677;EPPR=137.642;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=177;QR=2352;RO=62;RPL=5;RPP=13.8677;RPPR=137.642;RPR=0;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=137.642;SRR=62;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:18:18,0:18:700:0:0:0,-5.41854,-63.3274 0|1:10:5,5:5:197:5:177:-13.258,0,-15.0959 0|0:20:20,0:20:732:0:0:0,-6.0206,-66.1868 0|0:19:19,0:19:723:0:0:0,-5.71957,-65.3936 dDocent_Contig_8194 52 . C T 1966.13 . AB=0.609091;ABP=14.3809;AC=4;AF=0.5;AN=8;AO=67;CIGAR=1X;DP=110;DPB=110;DPRA=0;EPP=148.499;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2620;QR=1692;RO=43;RPL=67;RPP=148.499;RPPR=96.3836;RPR=0;RUN=1;SAF=67;SAP=148.499;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:52:18,34:18:707:34:1339:-105.119,0,-48.2992 0/1:43:14,29:14:546:29:1121:-88.2235,0,-36.5311 0/1:7:5,2:5:194:2:80:-5.48458,0,-15.7229 0/1:8:6,2:6:245:2:80:-5.18355,0,-20.0212 dDocent_Contig_8195 152 . G A 941.202 . AB=0.429752;ABP=8.19671;AC=4;AF=0.5;AN=8;AO=52;CIGAR=1X;DP=121;DPB=121;DPRA=0;EPP=115.927;EPPR=152.842;GTI=0;LEN=1;MEANALT=1;MQM=59.8846;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.985507;PAO=0;PQA=0;PQR=0;PRO=0;QA=1520;QR=2251;RO=69;RPL=0;RPP=115.927;RPPR=152.842;RPR=52;RUN=1;SAF=0;SAP=115.927;SAR=52;SRF=0;SRP=152.842;SRR=69;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:46:36,10:36:1127:10:277:-11.3524,0,-87.8618 0/1:36:18,18:18:615:18:506:-34.9726,0,-44.8352 0/1:19:5,14:5:174:14:403:-30.8303,0,-10.2824 0/1:20:10,10:10:335:10:334:-24.3629,0,-24.454 dDocent_Contig_8196 23 . C A 557.146 . AB=0.3;ABP=30.8051;AC=4;AF=0.5;AN=8;AO=24;CIGAR=1X1M2X7M;DP=80;DPB=80.5455;DPRA=0;EPP=55.1256;EPPR=120.27;GTI=0;LEN=1;MEANALT=1.25;MQM=59.9167;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.666667;PAO=0;PQA=0;PQR=0;PRO=0;QA=947;QR=2124;RO=54;RPL=0;RPP=55.1256;RPPR=120.27;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:19:14,5,0:14:556:5,0:193,0:-12.0205,0,-44.6644,-16.2349,-46.1696,-62.016 0|1:22:10,10,2:10:387:10,2:399,24:-30.1037,0,-29.0229,-32.1241,-31.0413,-63.3032 0|1:23:16,7,0:16:624:7,0:274,0:-18.1046,0,-49.5715,-22.9211,-51.6787,-74.2091 0|1:16:14,2,0:14:557:2,0:81,0:-2.86925,0,-45.6571,-7.08367,-46.2591,-52.9392 dDocent_Contig_8197 182 . T C 356.121 . AB=0.301887;ABP=21.0786;AC=2;AF=0.25;AN=8;AO=17;CIGAR=1X;DP=95;DPB=95;DPRA=0.933333;EPP=39.9253;EPPR=172.385;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.823529;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=644;QR=3106;RO=78;RPL=17;RPP=39.9253;RPPR=172.385;RPR=0;RUN=1;SAF=0;SAP=39.9253;SAR=17;SRF=0;SRP=172.385;SRR=78;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:13,9:13:514:9:352:-25.4176,0,-39.9798 0/0:17:16,1:16:641:1:41:0,-1.02294,-53.929 0/1:31:24,7:24:968:7:251:-13.5924,0,-78.0873 0/0:25:25,0:25:983:0:0:0,-7.52575,-88.771 dDocent_Contig_8198 13 . C T 461.561 . AB=0.461538;ABP=3.51141;AC=3;AF=0.375;AN=8;AO=18;CIGAR=1X2M1X;DP=55;DPB=55;DPRA=0.8125;EPP=42.0968;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=51.1111;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.555556;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=714;QR=1464;RO=37;RPL=0;RPP=42.0968;RPPR=83.3548;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:16:16,0:16:633:0:0:0,-4.81648,-57.3056 0|1:6:1,5:1:41:5:201:-16.6647,0,-2.28839 0|1:16:11,5:11:434:5:194:-13.0155,0,-34.5976 0|1:17:9,8:9:356:8:319:-21.8212,0,-27.285 dDocent_Contig_8201 1 . N G 150.739 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=156;QR=0;RO=0;RPL=0;RPP=11.6962;RPPR=0;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1:0,1:0:0:1:34:-3.39891,-0.30103,0 ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:122:-11.3725,-0.90309,0 ./.:.:.:.:.:.:.:. dDocent_Contig_8202 19 . T G 77.0759 . AB=0.127273;ABP=69.3784;AC=1;AF=0.125;AN=8;AO=11;CIGAR=1X;DP=170;DPB=170;DPRA=0;EPP=26.8965;EPPR=348.274;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=441;QR=6296;RO=159;RPL=0;RPP=26.8965;RPPR=348.274;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=159;SRP=348.274;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:55:48,7:48:1926:7:281:-9.10553,0,-156.979 0/0:38:37,1:37:1492:1:41:0,-7.34457,-130.427 0/0:44:42,2:42:1621:2:78:0,-5.84254,-138.72 0/0:33:32,1:32:1257:1:41:0,-5.83942,-109.299 dDocent_Contig_8204 179 . A G 127.727 . AB=0.2;ABP=14.7363;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X3M1I5M;DP=50;DPB=50.3333;DPRA=1.28571;EPP=9.52472;EPPR=98.5551;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=118;QR=1722;RO=44;RPL=3;RPP=9.52472;RPPR=98.5551;RPR=0;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=98.5551;SRR=44;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:15:11,3,0:11:429:3,0:118,0:-6.39038,0,-34.3492,-9.70171,-35.2523,-44.9594 0|0:2:0,0,2:0:0:0,2:0,82:-7.77968,-7.77968,-7.77968,-0.60206,-0.60206,0 0|0:22:22,0,0:22:860:0,0:0,0:0,-6.62266,-77.7186,-6.62266,-77.7186,-77.7186 0|0:11:11,0,0:11:433:0,0:0,0:0,-3.31133,-39.3247,-3.31133,-39.3247,-39.3247 dDocent_Contig_8205 8 . T A 478.767 . AB=0.322034;ABP=19.2411;AC=5;AF=0.625;AN=8;AO=26;CIGAR=2X;DP=67;DPB=67;DPRA=0;EPP=59.4686;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1.5;MQM=30.9231;MQMR=60;NS=4;NUMALT=2;ODDS=6.93889e-18;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=974;QR=1297;RO=38;RPL=0;RPP=59.4686;RPPR=85.5263;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:13:6,7,0:6:214:7,0:256,0:-14.8947,0,-15.6913,-16.7009,-17.7985,-34.1718 1|1:8:0,7,0:0:0:7,0:270,0:-19.0111,-2.10721,0,-19.0111,-2.10721,-19.0111 0|1:26:15,9,2:15:512:9,2:342,22:-17.1936,0,-39.0313,-20.3656,-40.3899,-61.3262 0|1:20:17,3,0:17:571:3,0:106,0:-2.09577,0,-45.6798,-7.21327,-46.5828,-53.4994 dDocent_Contig_8206 52 . A G 50.004 . AB=0.666667;ABP=3.73412;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X;DP=52;DPB=52;DPRA=0.183673;EPP=7.35324;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.84;PAO=0;PQA=0;PQR=0;PRO=0;QA=80;QR=2008;RO=50;RPL=2;RPP=7.35324;RPPR=111.584;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:13:13,0:13:517:0:0:0,-3.91339,-46.8713 0/0:14:14,0:14:565:0:0:0,-4.21442,-51.192 0/0:22:22,0:22:887:0:0:0,-6.62266,-80.136 0/1:3:1,2:1:39:2:80:-6.68848,0,-2.99347 dDocent_Contig_8207 12 . A G 203.025 . AB=0.211538;ABP=40.5935;AC=2;AF=0.25;AN=8;AO=14;CIGAR=1X;DP=110;DPB=110;DPRA=0;EPP=33.4109;EPPR=211.472;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.958333;PAO=0;PQA=0;PQR=0;PRO=0;QA=547;QR=3627;RO=96;RPL=0;RPP=33.4109;RPPR=211.472;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=96;SRP=211.472;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:39:33,6:33:1231:6:228:-9.14242,0,-99.3212 0/1:13:8,5:8:314:5:201:-14.5575,0,-24.7086 0/0:27:25,2:25:974:2:82:0,-0.348132,-80.1715 0/0:31:30,1:30:1108:1:36:0,-5.73365,-96.3996 dDocent_Contig_8208 134 . C T 1108.8 . AB=0.386364;ABP=7.94546;AC=4;AF=0.5;AN=8;AO=41;CIGAR=1X;DP=83;DPB=83;DPRA=1.51111;EPP=92.0407;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1406;QR=1421;RO=42;RPL=0;RPP=92.0407;RPPR=94.2121;RPR=41;RUN=1;SAF=0;SAP=92.0407;SAR=41;SRF=0;SRP=94.2121;SRR=42;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:24:0,24:0:0:24:826:-74.6569,-7.22472,0 0/1:15:9,6:9:315:6:207:-14.4528,0,-24.1733 0/0:15:15,0:15:520:0:0:0,-4.51545,-47.1292 0/1:29:18,11:18:586:11:373:-25.1677,0,-44.3172 dDocent_Contig_8209 60 . A G 195.749 . AB=0.204545;ABP=69.7337;AC=2;AF=0.25;AN=8;AO=22;CIGAR=1X;DP=174;DPB=174;DPRA=1.0813;EPP=50.7827;EPPR=333.074;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.9671;NS=4;NUMALT=1;ODDS=0;PAIRED=0.818182;PAIREDR=0.967105;PAO=0;PQA=0;PQR=0;PRO=0;QA=669;QR=5050;RO=152;RPL=22;RPP=50.7827;RPPR=333.074;RPR=0;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=152;SRP=333.074;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:41:41,0:41:1391:0:0:0,-12.3422,-125.48 0/1:54:44,10:44:1453:10:292:-10.3094,0,-114.799 0/1:34:26,8:26:835:8:251:-12.6634,0,-65.213 0/0:45:41,4:41:1371:4:126:0,-1.89395,-112.022 dDocent_Contig_8210 79 . T A 2568.11 . AB=0.297872;ABP=153.119;AC=4;AF=0.5;AN=8;AO=126;CIGAR=1X;DP=423;DPB=423;DPRA=0;EPP=276.616;EPPR=647.938;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=2.77556e-17;PAIRED=1;PAIREDR=0.855219;PAO=0;PQA=0;PQR=0;PRO=0;QA=4337;QR=10003;RO=297;RPL=126;RPP=276.616;RPPR=647.938;RPR=0;RUN=1;SAF=126;SAP=276.616;SAR=0;SRF=297;SRP=647.938;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:115:76,39:76:2619:39:1344:-86.636,0,-201.349 0/1:120:78,42:78:2627:42:1450:-94.6682,0,-200.56 0/1:125:98,27:98:3309:27:940:-47.2854,0,-260.412 0/1:63:45,18:45:1448:18:603:-35.619,0,-111.635 dDocent_Contig_8211 10 . C A 296.219 . AB=0.2;ABP=65.5487;AC=2;AF=0.25;AN=8;AO=16;CIGAR=1X2M1X;DP=188;DPB=188;DPRA=0.740741;EPP=37.7539;EPPR=359.132;GTI=0;LEN=1;MEANALT=2.5;MQM=54;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.969512;PAO=0;PQA=0;PQR=0;PRO=0;QA=619;QR=5429;RO=164;RPL=0;RPP=37.7539;RPPR=359.132;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=164;SRP=359.132;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:69:67,0,2:67:2213:0,2:0,50:0,-20.169,-199.149,-16.0219,-195.254,-194.652 0|0:39:37,0,2:37:1236:0,2:0,22:0,-11.1381,-111.397,-9.65018,-110.03,-109.428 0|1:44:36,5,2:36:1183:5,2:195,22:-5.26697,0,-94.1976,-14.795,-94.3361,-109.725 0|1:36:24,11,1:24:797:11,1:424,11:-27.7528,0,-61.3727,-34.3114,-64.0039,-98.4455 dDocent_Contig_8212 11 . T C 171.885 . AB=0.333333;ABP=8.07707;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=124;DPB=124;DPRA=0.61165;EPP=18.2106;EPPR=257.073;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=276;QR=4544;RO=117;RPL=0;RPP=18.2106;RPPR=257.073;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=117;SRP=257.073;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:41:41,0:41:1557:0:0:0,-12.3422,-140.374 0/0:37:37,0:37:1446:0:0:0,-11.1381,-130.4 0/1:21:14,7:14:554:7:276:-18.8875,0,-43.8824 0/0:25:25,0:25:987:0:0:0,-7.52575,-89.1342 dDocent_Contig_8213 148 . C T 57.6779 . AB=0.166667;ABP=26.1727;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=54;DPB=54;DPRA=2.4;EPP=11.6962;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=159;QR=1956;RO=50;RPL=0;RPP=11.6962;RPPR=111.584;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=111.584;SRR=50;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5,0:5:192:0:0:0,-1.50515,-17.6464 0/1:24:20,4:20:785:4:159:-7.46672,0,-63.7418 0/0:17:17,0:17:657:0:0:0,-5.11751,-59.4465 0/0:8:8,0:8:322:0:0:0,-2.40824,-29.3472 dDocent_Contig_8214 14 . G A 1022.46 . AB=0.283784;ABP=63.1073;AC=4;AF=0.5;AN=8;AO=42;CIGAR=1X4M1X2M1X1M1X;DP=148;DPB=148;DPRA=0;EPP=94.2121;EPPR=200.614;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1655;QR=3479;RO=91;RPL=0;RPP=94.2121;RPPR=200.614;RPR=42;RUN=1;SAF=42;SAP=94.2121;SAR=0;SRF=91;SRP=200.614;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:39:18,0,21:18:674:0,21:0,839:-64.0853,-69.5038,-124.687,0,-55.5687,-49.2471 0|1:21:16,0,5:16:614:0,5:0,198:-11.8757,-16.6922,-67.0797,0,-50.7802,-49.275 0|1:42:29,6,7:29:1114:6,7:238,267:-13.1635,-2.29424,-91.9321,0,-71.8373,-89.3243 0|1:46:28,9,9:28:1077:9,9:351,351:-20.4227,0,-85.7083,-0.00106776,-59.5658,-85.7094 dDocent_Contig_8215 116 . A T 622.168 . AB=0.4375;ABP=3.55317;AC=3;AF=0.375;AN=8;AO=8;CIGAR=1X2M1X;DP=64;DPB=64;DPRA=0.708333;EPP=20.3821;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=34.375;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=297;QR=897;RO=27;RPL=0;RPP=20.3821;RPPR=61.6401;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=0;SRP=61.6401;SRR=27;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:12:12,0,0:12:397:0,0:0,0:0,-3.61236,-36.0506,-3.61236,-36.0506,-36.0506 1|1:1:0,1,0:0:0:1,0:38,0:-3.25451,-0.30103,0,-3.25451,-0.30103,-3.25451 0|1:16:9,7,0:9:302:7,0:259,0:-15.925,0,-22.6906,-18.6343,-24.7978,-43.103 0|0:35:6,0,28:6:198:0,28:0,934:-46.434,-48.2402,-64.2678,0,-16.2314,-7.80256 dDocent_Contig_8216 20 . A T 650.181 . AB=0.305882;ABP=30.8307;AC=4;AF=0.5;AN=8;AO=26;CIGAR=1X;DP=85;DPB=85;DPRA=0;EPP=59.4686;EPPR=131.127;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1052;QR=2364;RO=59;RPL=0;RPP=59.4686;RPPR=131.127;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=59;SRP=131.127;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:8,11:8:322:11:446:-34.776,0,-23.6277 0/1:13:12,1:12:476:1:41:-0.181177,0,-39.2727 0/1:28:19,9:19:756:9:366:-24.8761,0,-59.9348 0/1:25:20,5:20:810:5:199:-10.7622,0,-65.6898 dDocent_Contig_8217 12 . C G 2684.9 . AB=0.564417;ABP=8.88527;AC=4;AF=0.5;AN=8;AO=92;CIGAR=1X;DP=163;DPB=163;DPRA=0;EPP=202.786;EPPR=157.185;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.957746;PAO=0;PQA=0;PQR=0;PRO=0;QA=3597;QR=2825;RO=71;RPL=0;RPP=202.786;RPPR=157.185;RPR=92;RUN=1;SAF=92;SAP=202.786;SAR=0;SRF=71;SRP=157.185;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:5,21:5:200:21:826:-66.8274,0,-10.5516 0/1:74:35,39:35:1410:39:1523:-115.046,0,-104.872 0/1:36:21,15:21:822:15:597:-43.2298,0,-63.4585 0/1:27:10,17:10:393:17:651:-50.7842,0,-27.5956 dDocent_Contig_8218 17 . C A 32.9579 . AB=0.25;ABP=7.35324;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=128;DPB=128;DPRA=0.454545;EPP=9.52472;EPPR=274.444;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=119;QR=5064;RO=125;RPL=0;RPP=9.52472;RPPR=274.444;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=125;SRP=274.444;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:55:55,0:55:2223:0:0:0,-16.5566,-200.229 0/0:32:31,1:31:1253:1:41:0,-5.53839,-108.94 0/0:33:33,0:33:1342:0:0:0,-9.93399,-121.034 0/1:8:6,2:6:246:2:78:-4.99454,0,-20.1119 dDocent_Contig_8219 187 . G A 34.8487 . AB=0.25;ABP=7.35324;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X;DP=30;DPB=30;DPRA=1.09091;EPP=7.35324;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=80;QR=1118;RO=28;RPL=2;RPP=7.35324;RPPR=63.8115;RPR=0;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=63.8115;SRR=28;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:7:7,0:7:283:0:0:0,-2.10721,-25.8436 0/1:8:6,2:6:241:2:80:-5.18355,0,-19.6584 0/0:12:12,0:12:479:0:0:0,-3.61236,-43.4603 0/0:3:3,0:3:115:0:0:0,-0.90309,-10.7247 dDocent_Contig_8220 29 . A G 255.885 . AB=0.170455;ABP=86.0198;AC=2;AF=0.25;AN=8;AO=15;CIGAR=1X;DP=105;DPB=105;DPRA=5.17647;EPP=35.5824;EPPR=198.443;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=595;QR=3602;RO=90;RPL=0;RPP=35.5824;RPPR=198.443;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=90;SRP=198.443;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:41:30,11:30:1190:11:433:-26.9794,0,-95.0345 0/1:47:43,4:43:1737:4:162:-0.818546,0,-142.396 0/0:10:10,0:10:392:0:0:0,-3.0103,-35.6314 0/0:7:7,0:7:283:0:0:0,-2.10721,-25.843 dDocent_Contig_8221 107 . N T 308.839 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=10;CIGAR=1X;DP=10;DPB=10;DPRA=0;EPP=24.725;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=327;QR=0;RO=0;RPL=0;RPP=24.725;RPPR=0;RPR=10;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:4:0,4:0:0:4:126:-11.6521,-1.20412,0 ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:103:-9.61002,-0.90309,0 1/1:3:0,3:0:0:3:98:-9.14417,-0.90309,0 dDocent_Contig_8222 209 . N G 352.71 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=10;CIGAR=1X;DP=10;DPB=10;DPRA=0;EPP=24.725;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=11.5366;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=388;QR=0;RO=0;RPL=10;RPP=24.725;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:10:0,10:0:0:10:388:-35.271,-3.0103,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_8223 7 . G A 1110.9 . AB=0.573529;ABP=6.20364;AC=2;AF=0.25;AN=8;AO=41;CIGAR=1X;DP=132;DPB=132;DPRA=1.18391;EPP=92.0407;EPPR=196.271;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1568;QR=2955;RO=89;RPL=0;RPP=92.0407;RPPR=196.271;RPR=41;RUN=1;SAF=41;SAP=92.0407;SAR=0;SRF=89;SRP=196.271;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:4,32:4:142:32:1231:-100.247,0,-2.28936 0/0:29:29,0:29:939:0:0:0,-8.72987,-84.7909 0/0:35:32,2:32:1047:2:78:0,-3.0881,-87.1674 0/1:32:24,7:24:827:7:259:-14.1893,0,-65.2838 dDocent_Contig_8224 8 . T C 907.324 . AB=0.411765;ABP=9.90792;AC=4;AF=0.5;AN=8;AO=42;CIGAR=1X;DP=102;DPB=102;DPRA=0;EPP=94.2121;EPPR=133.299;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.97619;PAIREDR=0.966667;PAO=0;PQA=0;PQR=0;PRO=0;QA=1417;QR=1957;RO=60;RPL=0;RPP=94.2121;RPPR=133.299;RPR=42;RUN=1;SAF=42;SAP=94.2121;SAR=0;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:41:25,16:25:819:16:519:-34.6717,0,-61.6559 0/1:13:8,5:8:233:5:175:-12.1789,0,-17.3405 0/1:20:13,7:13:431:7:247:-16.5506,0,-33.0778 0/1:28:14,14:14:474:14:476:-34.7291,0,-34.5485 dDocent_Contig_8226 13 . T A 1197.81 . AB=0.353846;ABP=27.1303;AC=4;AF=0.5;AN=8;AO=46;CIGAR=1X;DP=130;DPB=130;DPRA=0;EPP=102.898;EPPR=185.414;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.913043;PAIREDR=0.821429;PAO=0;PQA=0;PQR=0;PRO=0;QA=1832;QR=3334;RO=84;RPL=0;RPP=102.898;RPPR=185.414;RPR=46;RUN=1;SAF=46;SAP=102.898;SAR=0;SRF=84;SRP=185.414;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:43:29,14:29:1145:14:562:-37.9784,0,-90.3855 0/1:25:12,13:12:483:13:522:-39.8014,0,-36.2958 0/1:34:18,16:18:703:16:630:-46.797,0,-53.3581 0/1:28:25,3:25:1003:3:118:-2.57388,0,-82.1385 dDocent_Contig_8227 12 . C G 158.437 . AB=0.214286;ABP=32.7905;AC=2;AF=0.25;AN=8;AO=9;CIGAR=2X;DP=85;DPB=85;DPRA=0.976744;EPP=22.5536;EPPR=168.042;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.934211;PAO=0;PQA=0;PQR=0;PRO=0;QA=346;QR=2975;RO=76;RPL=0;RPP=22.5536;RPPR=168.042;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=76;SRP=168.042;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:38:38,0:38:1489:0:0:0,-11.4391,-134.272 0|1:18:12,6:12:479:6:228:-15.462,0,-38.0441 0|1:24:21,3:21:820:3:118:-3.77779,0,-66.8944 0|0:5:5,0:5:187:0:0:0,-1.50515,-17.1906 dDocent_Contig_8228 109 . T C 76.4937 . AB=0.4;ABP=3.87889;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=34;DPB=34;DPRA=0.833333;EPP=11.6962;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.833333;PAO=0;PQA=0;PQR=0;PRO=0;QA=135;QR=1034;RO=30;RPL=0;RPP=11.6962;RPPR=68.1545;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=68.1545;SRR=30;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 0/0:10:10,0:10:353:0:0:0,-3.0103,-32.1092 0/0:14:14,0:14:482:0:0:0,-4.21442,-43.7058 0/1:10:6,4:6:199:4:135:-9.47328,0,-15.2237 dDocent_Contig_8229 13 . T C 152.078 . AB=0.461538;ABP=3.17734;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=49;DPB=49;DPRA=1.08333;EPP=16.0391;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=224;QR=1661;RO=43;RPL=0;RPP=16.0391;RPPR=96.3836;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:7,6:7:275:6:224:-16.6057,0,-21.2059 0/0:19:19,0:19:735:0:0:0,-5.71957,-66.4783 0/0:10:10,0:10:379:0:0:0,-3.0103,-34.4607 0/0:7:7,0:7:272:0:0:0,-2.10721,-24.8464 dDocent_Contig_8231 118 . C T 596.163 . AB=0.316327;ABP=31.7269;AC=2;AF=0.25;AN=8;AO=31;CIGAR=1X;DP=233;DPB=233;DPRA=0.725926;EPP=70.3259;EPPR=441.648;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.99505;PAO=0;PQA=0;PQR=0;PRO=0;QA=1021;QR=6852;RO=202;RPL=0;RPP=70.3259;RPPR=441.648;RPR=31;RUN=1;SAF=0;SAP=70.3259;SAR=31;SRF=0;SRP=441.648;SRR=202;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:122:122,0:122:4150:0:0:0,-36.7257,-373.71 0/1:62:44,18:44:1495:18:605:-36.1039,0,-116.176 0/1:36:23,13:23:767:13:416:-26.9104,0,-58.5015 0/0:13:13,0:13:440:0:0:0,-3.91339,-39.9252 dDocent_Contig_8232 138 . A T 1098.5 . AB=0.401639;ABP=13.2625;AC=4;AF=0.5;AN=8;AO=49;CIGAR=1X;DP=122;DPB=122;DPRA=0;EPP=109.412;EPPR=161.528;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1696;QR=2575;RO=73;RPL=0;RPP=109.412;RPPR=161.528;RPR=49;RUN=1;SAF=0;SAP=109.412;SAR=49;SRF=0;SRP=161.528;SRR=73;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:49:27,22:27:946:22:744:-52.519,0,-70.7037 0/1:25:8,17:8:284:17:597:-46.5327,0,-18.3779 0/1:29:24,5:24:848:5:178:-7.63885,0,-67.91 0/1:19:14,5:14:497:5:177:-10.5574,0,-39.3457 dDocent_Contig_8233 25 . T A 73.7283 . AB=0.142857;ABP=26.2761;AC=1;AF=0.125;AN=8;AO=3;CIGAR=6M1X3M;DP=71;DPB=70.6;DPRA=1.26;EPP=9.52472;EPPR=139.813;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.825397;PAO=0;PQA=0;PQR=0;PRO=0;QA=119;QR=2491;RO=63;RPL=0;RPP=9.52472;RPPR=139.813;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=63;SRP=139.813;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:21:18,0,3:18:715:0,3:0,119:-4.77376,-10.1923,-69.0565,0,-59.2605,-58.3574 0|0:18:16,1,0:16:635:1,0:38,0:0,-1.71483,-53.6763,-4.81648,-53.9774,-57.0929 0|0:31:29,2,0:29:1141:2,0:78,0:0,-1.92915,-95.5748,-8.72987,-96.1769,-102.588 0|0:1:0,1,0:0:0:1,0:40,0:-3.99568,-0.30103,0,-3.99568,-0.30103,-3.99568 dDocent_Contig_8234 37 . A G 130.906 . AB=0.15493;ABP=76.4428;AC=2;AF=0.25;AN=8;AO=11;CIGAR=1X;DP=121;DPB=121;DPRA=1.42;EPP=26.8965;EPPR=208.392;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.963636;PAO=0;PQA=0;PQR=0;PRO=0;QA=413;QR=4358;RO=110;RPL=0;RPP=26.8965;RPPR=224.816;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=108;SRP=224.816;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:38:38,0:38:1480:0:0:0,-11.4391,-133.449 0/1:60:53,7:53:2119:7:278:-7.32745,0,-172.83 0/1:11:7,4:7:277:4:135:-9.16109,0,-21.9868 0/0:12:12,0:12:482:0:0:0,-3.61236,-43.7309 dDocent_Contig_8236 58 . C A 50.8907 . AB=0.2;ABP=18.6449;AC=2;AF=0.25;AN=8;AO=4;CIGAR=1X;DP=50;DPB=50;DPRA=0.666667;EPP=11.6962;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=138;QR=1579;RO=46;RPL=4;RPP=11.6962;RPPR=102.898;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9449 0/0:26:26,0:26:890:0:0:0,-7.82678,-80.4136 0/1:10:7,3:7:243:3:105:-6.78586,0,-19.1985 0/1:10:9,1:9:306:1:33:-0.288835,0,-24.8601 dDocent_Contig_8237 142 . G A 247.615 . AB=0.208955;ABP=52.306;AC=2;AF=0.25;AN=8;AO=14;CIGAR=1X;DP=86;DPB=86;DPRA=3.52632;EPP=33.4109;EPPR=159.356;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=529;QR=2866;RO=72;RPL=0;RPP=33.4109;RPPR=159.356;RPR=14;RUN=1;SAF=0;SAP=33.4109;SAR=14;SRF=0;SRP=159.356;SRR=72;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:7:7,0:7:274:0:0:0,-2.10721,-25.0283 0/0:12:12,0:12:483:0:0:0,-3.61236,-43.8212 0/1:28:23,5:23:924:5:194:-9.40226,0,-75.0344 0/1:39:30,9:30:1185:9:335:-18.7572,0,-95.1881 dDocent_Contig_8239 13 . G C 1090.69 . AB=0.267442;ABP=83.8093;AC=2;AF=0.25;AN=8;AO=46;CIGAR=1X;DP=207;DPB=207;DPRA=4.91429;EPP=102.898;EPPR=352.617;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1818;QR=6021;RO=161;RPL=0;RPP=102.898;RPPR=352.617;RPR=46;RUN=1;SAF=46;SAP=102.898;SAR=0;SRF=161;SRP=352.617;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:128:99,29:99:3691:29:1141:-64.4506,0,-293.762 0/1:44:27,17:27:1048:17:677:-48.0165,0,-81.3775 0/0:18:18,0:18:660:0:0:0,-5.41854,-59.7169 0/0:17:17,0:17:622:0:0:0,-5.11751,-56.3069 dDocent_Contig_8240 12 . T A 130.68 . AB=0.416667;ABP=3.73412;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=64;DPB=64;DPRA=0.692308;EPP=13.8677;EPPR=131.127;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=200;QR=2084;RO=59;RPL=0;RPP=13.8677;RPPR=131.127;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=59;SRP=131.127;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:24:24,0:24:846:0:0:0,-7.22472,-76.4487 0/0:15:15,0:15:535:0:0:0,-4.51545,-48.481 0/0:13:13,0:13:460:0:0:0,-3.91339,-41.7296 0/1:12:7,5:7:243:5:200:-14.767,0,-18.5949 dDocent_Contig_8243 28 . C T 269.866 . AB=0.272727;ABP=22.751;AC=1;AF=0.125;AN=8;AO=12;CIGAR=1X;DP=111;DPB=111;DPRA=1.97015;EPP=29.068;EPPR=217.986;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=462;QR=3922;RO=99;RPL=0;RPP=29.068;RPPR=217.986;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=99;SRP=217.986;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:38:38,0:38:1525:0:0:0,-11.4391,-137.489 0/1:44:32,12:32:1241:12:462:-28.6855,0,-98.7067 0/0:16:16,0:16:630:0:0:0,-4.81648,-57.0262 0/0:13:13,0:13:526:0:0:0,-3.91339,-47.6863 dDocent_Contig_8244 13 . T A 99.9983 . AB=0.10687;ABP=178.866;AC=1;AF=0.125;AN=8;AO=22;CIGAR=1X;DP=482;DPB=482;DPRA=1.34028;EPP=50.7827;EPPR=950.248;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=59.6776;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=0;PAIREDR=0.767544;PAO=0;PQA=0;PQR=0;PRO=0;QA=867;QR=18060;RO=456;RPL=0;RPP=50.7827;RPPR=993.202;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=451;SRP=950.248;SRR=5;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:131:113,14:113:4475:14:552:-11.3978,0,-363.397 0/0:148:141,7:141:5610:7:275:0,-19.437,-478.069 0/0:107:106,1:106:4180:1:40:0,-28.2145,-371.881 0/0:96:96,0:96:3795:0:0:0,-28.8989,-341.442 dDocent_Contig_8245 117 . C T 202.751 . AB=0.366667;ABP=7.64277;AC=3;AF=0.375;AN=8;AO=17;CIGAR=1X;DP=107;DPB=107;DPRA=0;EPP=3.13803;EPPR=198.443;GTI=0;LEN=1;MEANALT=1;MQM=36;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=616;QR=3015;RO=90;RPL=0;RPP=39.9253;RPPR=198.443;RPR=17;RUN=1;SAF=8;SAP=3.13803;SAR=9;SRF=0;SRP=198.443;SRR=90;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:77:71,6:71:2417:6:196:0,-14.5451,-209.162 0/1:9:7,2:7:237:2:68:-1.59796,0,-18.9524 0/1:16:9,7:9:276:7:270:-17.7442,0,-20.3224 0/1:5:3,2:3:85:2:82:-5.88789,0,-6.42608 dDocent_Contig_8247 21 . G A 1487.8 . AB=0.257812;ABP=133.434;AC=4;AF=0.5;AN=8;AO=66;CIGAR=1X;DP=256;DPB=256;DPRA=0;EPP=146.327;EPPR=415.59;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.939394;PAIREDR=0.931579;PAO=0;PQA=0;PQR=0;PRO=0;QA=2577;QR=7465;RO=190;RPL=0;RPP=146.327;RPPR=415.59;RPR=66;RUN=1;SAF=66;SAP=146.327;SAR=0;SRF=190;SRP=415.59;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:79:58,21:58:2290:21:820:-50.3287,0,-182.498 0/1:60:47,13:47:1826:13:517:-28.8159,0,-146.5 0/1:55:41,14:41:1607:14:530:-31.474,0,-128.311 0/1:62:44,18:44:1742:18:710:-45.5593,0,-138.349 dDocent_Contig_8248 86 . C T 142.217 . AB=0.203704;ABP=44.1879;AC=2;AF=0.25;AN=8;AO=11;CIGAR=1X;DP=70;DPB=70;DPRA=3.375;EPP=26.8965;EPPR=131.127;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=369;QR=2011;RO=59;RPL=11;RPP=26.8965;RPPR=131.127;RPR=0;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=59;SRP=131.127;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:25,4:25:842:4:140:-4.21506,0,-67.3608 0/1:25:18,7:18:621:7:229:-13.4038,0,-48.6888 0/0:12:12,0:12:409:0:0:0,-3.61236,-37.1377 0/0:4:4,0:4:139:0:0:0,-1.20412,-12.8527 dDocent_Contig_8250 1 . N G 74.9872 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=79;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:79:-7.49763,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_8251 33 . C T 68.4107 . AB=0.146341;ABP=47.552;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=191;DPB=191;DPRA=0.82;EPP=16.0391;EPPR=404.733;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=228;QR=7145;RO=185;RPL=0;RPP=16.0391;RPPR=404.733;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=185;SRP=404.733;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:60:60,0:60:2332:0:0:0,-18.0618,-210.075 0/1:41:35,6:35:1349:6:228:-8.54004,0,-109.336 0/0:37:37,0:37:1421:0:0:0,-11.1381,-128.156 0/0:53:53,0:53:2043:0:0:0,-15.9546,-184.08 dDocent_Contig_8252 35 . C T 61.8516 . AB=0.133333;ABP=55.5599;AC=1;AF=0.125;AN=8;AO=12;CIGAR=1X;DP=253;DPB=253;DPRA=1.6746;EPP=29.068;EPPR=526.335;GTI=0;LEN=1;MEANALT=1;MQM=56.0833;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.970954;PAO=0;PQA=0;PQR=0;PRO=0;QA=464;QR=9570;RO=241;RPL=0;RPP=29.068;RPPR=526.335;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=241;SRP=526.335;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:57:55,2:55:2208:2:79:0,-12.0351,-193.766 0/1:45:39,6:39:1565:6:234:-7.88413,0,-127.542 0/0:109:105,4:105:4133:4:151:0,-18.8549,-357.986 0/0:42:42,0:42:1664:0:0:0,-12.6433,-149.985 dDocent_Contig_8253 22 . A C 84.8316 . AB=0.75;ABP=5.18177;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=50;DPB=50;DPRA=0.26087;EPP=9.52472;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.978723;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=1887;RO=47;RPL=0;RPP=9.52472;RPPR=105.07;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:24:24,0:24:961:0:0:0,-7.22472,-86.7906 0/0:12:12,0:12:478:0:0:0,-3.61236,-43.371 0/0:10:10,0:10:407:0:0:0,-3.0103,-36.9904 0/1:4:1,3:1:41:3:122:-10.1684,0,-2.89045 dDocent_Contig_8254 7 . G A 614.178 . AB=0.0446429;ABP=204.725;AC=4;AF=0.5;AN=8;AO=5;CIGAR=1X1M;DP=139;DPB=139;DPRA=0;EPP=13.8677;EPPR=222.329;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=158;QR=3266;RO=101;RPL=0;RPP=13.8677;RPPR=222.329;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=101;SRP=222.329;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:40:28,9,3:28:932:9,3:329,109:-18.4554,0,-72.6716,-17.983,-66.4761,-92.4636 0|1:43:26,16,1:26:822:16,1:611,11:-42.559,0,-61.4994,-49.7128,-65.6346,-115.489 0|1:27:22,4,0:22:701:4,0:149,0:-5.72003,0,-55.3591,-12.3427,-56.5632,-68.7689 0|1:29:25,3,1:25:811:3,1:115,38:-1.91563,0,-64.4747,-6.3257,-62.2591,-71.4033 dDocent_Contig_8255 9 . C A 3619.76 . AB=0.512545;ABP=3.39167;AC=4;AF=0.5;AN=8;AO=143;CIGAR=1X;DP=279;DPB=279;DPRA=0;EPP=313.531;EPPR=296.159;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=49.8;NS=4;NUMALT=1;ODDS=0;PAIRED=0.993007;PAIREDR=0.6;PAO=0;PQA=0;PQR=0;PRO=0;QA=5025;QR=4773;RO=135;RPL=0;RPP=313.531;RPPR=296.159;RPR=143;RUN=1;SAF=143;SAP=313.531;SAR=0;SRF=135;SRP=296.159;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:57:30,26:30:1071:26:945:-68.1574,0,-72.7115 0/1:99:43,56:43:1479:56:1919:-143.158,0,-97.539 0/1:78:32,46:32:1127:46:1635:-123.937,0,-72.1428 0/1:45:30,15:30:1096:15:526:-34.1218,0,-80.0474 dDocent_Contig_8256 109 . G A 152.158 . AB=0.155963;ABP=115.07;AC=2;AF=0.25;AN=8;AO=19;CIGAR=1X;DP=208;DPB=208;DPRA=0;EPP=44.2683;EPPR=411.247;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=631;QR=6178;RO=188;RPL=0;RPP=44.2683;RPPR=411.247;RPR=19;RUN=1;SAF=0;SAP=44.2683;SAR=19;SRF=0;SRP=411.247;SRR=188;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:46:37,9:37:1207:9:289:-12.4753,0,-95.0719 0/1:63:54,8:54:1737:8:273:-6.13845,0,-137.861 0/0:61:60,1:60:1992:1:34:0,-14.9639,-176.155 0/0:38:37,1:37:1242:1:35:0,-7.94051,-108.579 dDocent_Contig_8257 10 . C T 802.961 . AB=0.21028;ABP=159.032;AC=3;AF=0.375;AN=8;AO=49;CIGAR=1X;DP=256;DPB=256;DPRA=0;EPP=109.412;EPPR=452.505;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1766;QR=7602;RO=207;RPL=0;RPP=109.412;RPPR=452.505;RPR=49;RUN=1;SAF=49;SAP=109.412;SAR=0;SRF=207;SRP=452.505;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:74:58,16:58:2145:16:600:-32.0497,0,-170.978 0/1:94:69,25:69:2542:25:885:-51.6429,0,-200.658 0/1:46:42,4:42:1521:4:150:-0.0168142,0,-123.287 0/0:42:38,4:38:1394:4:131:0,-0.533731,-113.6 dDocent_Contig_8261 46 . A C 1164.76 . AB=0.308725;ABP=50.3601;AC=4;AF=0.5;AN=8;AO=46;CIGAR=1X;DP=149;DPB=149;DPRA=0;EPP=102.898;EPPR=226.672;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1859;QR=4155;RO=103;RPL=0;RPP=102.898;RPPR=226.672;RPR=46;RUN=1;SAF=46;SAP=102.898;SAR=0;SRF=103;SRP=226.672;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:53:36,17:36:1443:17:684:-45.9335,0,-114.168 0/1:49:29,20:29:1178:20:807:-58.1945,0,-91.5439 0/1:41:35,6:35:1412:6:245:-10.0872,0,-114.99 0/1:6:3,3:3:122:3:123:-9.65861,0,-9.56631 dDocent_Contig_8262 108 . G T 217.937 . AB=0.314286;ABP=13.4954;AC=3;AF=0.375;AN=8;AO=11;CIGAR=1X;DP=38;DPB=38;DPRA=3.88889;EPP=26.8965;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=393;QR=877;RO=27;RPL=0;RPP=26.8965;RPPR=61.6401;RPR=11;RUN=1;SAF=0;SAP=26.8965;SAR=11;SRF=0;SRP=61.6401;SRR=27;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:3:3,0:3:89:0:0:0,-0.90309,-8.30494 0/1:9:6,3:6:199:3:108:-7.3659,0,-15.5267 0/1:17:10,7:10:325:7:251:-17.8203,0,-24.4461 0/1:9:8,1:8:264:1:34:-0.689641,0,-21.373 dDocent_Contig_8263 61 . T A 575.367 . 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A T 343.529 . AB=0.188119;ABP=88.3427;AC=3;AF=0.375;AN=8;AO=19;CIGAR=1X;DP=121;DPB=121;DPRA=1.68333;EPP=44.2683;EPPR=224.5;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=767;QR=4064;RO=102;RPL=19;RPP=44.2683;RPPR=224.5;RPR=0;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=102;SRP=224.5;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:20:20,0:20:800:0:0:0,-6.0206,-72.3172 0/1:27:21,6:21:823:6:238:-13.6645,0,-66.2572 0/1:41:35,6:35:1394:6:242:-9.81509,0,-113.378 0/1:33:26,7:26:1047:7:287:-16.2712,0,-84.5878 dDocent_Contig_8266 111 . A C 97.4394 . AB=0.24;ABP=17.6895;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=86;DPB=86;DPRA=1.22951;EPP=16.0391;EPPR=176.728;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=207;QR=2825;RO=80;RPL=0;RPP=16.0391;RPPR=176.728;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=176.728;SRR=80;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:46:46,0:46:1636:0:0:0,-13.8474,-147.526 0/0:1:1,0:1:35:0:0:0,-0.30103,-3.49863 0/1:25:19,6:19:683:6:207:-11.4423,0,-54.2738 0/0:14:14,0:14:471:0:0:0,-4.21442,-42.7069 dDocent_Contig_8267 15 . C A 152.545 . AB=0.269231;ABP=15.0369;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=91;DPB=91;DPRA=1.2;EPP=18.2106;EPPR=185.414;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=268;QR=3363;RO=84;RPL=0;RPP=18.2106;RPPR=185.414;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=84;SRP=185.414;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:19,7:19:762:7:268:-16.6525,0,-61.0751 0/0:21:21,0:21:849:0:0:0,-6.32163,-76.7221 0/0:28:28,0:28:1118:0:0:0,-8.42884,-100.899 0/0:16:16,0:16:634:0:0:0,-4.81648,-57.3924 dDocent_Contig_8268 52 . G A 55.5933 . AB=0.153846;ABP=30.0702;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=83;DPB=83;DPRA=1.36842;EPP=11.6962;EPPR=174.557;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.987342;PAO=0;PQA=0;PQR=0;PRO=0;QA=160;QR=3135;RO=79;RPL=4;RPP=11.6962;RPPR=174.557;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=79;SRP=174.557;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:22,4:22:873:4:160:-6.95723,0,-71.0538 0/0:32:32,0:32:1276:0:0:0,-9.63296,-115.109 0/0:20:20,0:20:788:0:0:0,-6.0206,-71.235 0/0:5:5,0:5:198:0:0:0,-1.50515,-18.1958 dDocent_Contig_8269 113 . G A 180.581 . AB=0.3125;ABP=12.7819;AC=2;AF=0.25;AN=8;AO=12;CIGAR=1X;DP=84;DPB=84;DPRA=1.66667;EPP=29.068;EPPR=159.356;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=407;QR=2445;RO=72;RPL=0;RPP=29.068;RPPR=159.356;RPR=12;RUN=1;SAF=0;SAP=29.068;SAR=12;SRF=0;SRP=159.356;SRR=72;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:15,6:15:498:6:198:-11.8225,0,-38.8159 0/0:14:14,0:14:484:0:0:0,-4.21442,-43.8895 0/0:38:36,2:36:1241:2:69:0,-4.88648,-105.441 0/1:11:7,4:7:222:4:140:-9.6336,0,-16.9794 dDocent_Contig_8270 11 . A T 1756.75 . AB=0.384181;ABP=23.6332;AC=3;AF=0.375;AN=8;AO=71;CIGAR=1X;DP=223;DPB=223;DPRA=0;EPP=157.185;EPPR=333.074;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2690;QR=5715;RO=152;RPL=0;RPP=157.185;RPPR=333.074;RPR=71;RUN=1;SAF=71;SAP=157.185;SAR=0;SRF=152;SRP=333.074;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:55:16,39:16:613:39:1507:-119.333,0,-38.9453 0/0:46:43,3:43:1642:3:114:0,-3.21557,-137.402 0/1:36:33,3:33:1253:3:121:-0.443117,0,-102.215 0/1:86:60,26:60:2207:26:948:-59.7364,0,-172.938 dDocent_Contig_8271 11 . A T 625.959 . AB=0.380952;ABP=10.7656;AC=3;AF=0.375;AN=8;AO=24;CIGAR=1X;DP=84;DPB=84;DPRA=1;EPP=55.1256;EPPR=133.299;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.833333;PAIREDR=0.9;PAO=0;PQA=0;PQR=0;PRO=0;QA=954;QR=2313;RO=60;RPL=0;RPP=55.1256;RPPR=133.299;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:21:21,0:21:799:0:0:0,-6.32163,-72.2197 0/1:33:19,14:19:753:14:557:-40.5397,0,-58.1583 0/1:17:12,5:12:437:5:198:-13.08,0,-34.5333 0/1:13:8,5:8:324:5:199:-14.3741,0,-25.6154 dDocent_Contig_8272 24 . T G 496.059 . AB=0.461538;ABP=3.51141;AC=3;AF=0.375;AN=8;AO=18;CIGAR=1X;DP=47;DPB=47;DPRA=1.625;EPP=42.0968;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=729;QR=1134;RO=29;RPL=0;RPP=42.0968;RPPR=65.983;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:8,6:8:314:6:242:-17.9425,0,-24.4059 0/0:8:8,0:8:325:0:0:0,-2.40824,-29.6196 0/1:18:11,7:11:416:7:284:-20.5155,0,-32.3616 0/1:7:2,5:2:79:5:203:-16.5458,0,-5.39003 dDocent_Contig_8273 18 . C T 45.9456 . AB=0.5;ABP=3.0103;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X3M1X;DP=45;DPB=45;DPRA=0.292683;EPP=7.35324;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=79;QR=1646;RO=42;RPL=0;RPP=7.35324;RPPR=94.2121;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:23:22,0:22:855:0:0:0,-6.62266,-77.1535 0|0:10:10,0:10:393:0:0:0,-3.0103,-35.7283 0|0:8:8,0:8:319:0:0:0,-2.40824,-29.078 0|1:4:2,2:2:79:2:79:-6.29351,0,-6.29351 dDocent_Contig_8274 26 . C G 106.602 . AB=0.238095;ABP=15.5221;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=50;DPB=50;DPRA=2.17241;EPP=13.8677;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.955556;PAO=0;PQA=0;PQR=0;PRO=0;QA=200;QR=1793;RO=45;RPL=0;RPP=13.8677;RPPR=100.727;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:16,5:16:642:5:200:-12.0579,0,-51.7936 0/0:14:14,0:14:556:0:0:0,-4.21442,-50.3831 0/0:13:13,0:13:522:0:0:0,-3.91339,-47.3274 0/0:2:2,0:2:73:0:0:0,-0.60206,-6.9307 dDocent_Contig_8275 22 . C G 35.1081 . AB=0.121951;ABP=53.9075;AC=1;AF=0.125;AN=8;AO=17;CIGAR=1X;DP=271;DPB=271;DPRA=0;EPP=39.9253;EPPR=554.564;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.9843;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.992126;PAO=0;PQA=0;PQR=0;PRO=0;QA=682;QR=10225;RO=254;RPL=0;RPP=39.9253;RPPR=554.564;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=254;SRP=554.564;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:92:87,5:87:3474:5:205:0,-8.85975,-293.86 0/0:96:92,4:92:3717:4:163:0,-13.8405,-319.47 0/0:42:39,3:39:1578:3:123:0,-1.17847,-130.788 0/1:41:36,5:36:1456:5:191:-5.20958,0,-118.942 dDocent_Contig_8276 8 . T C 52.0234 . AB=0.153846;ABP=57.1301;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=130;DPB=130;DPRA=2;EPP=20.3821;EPPR=265.758;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=244;QR=3896;RO=121;RPL=0;RPP=20.3821;RPPR=265.758;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=121;SRP=265.758;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:52:44,8:44:1340:8:244:-6.60028,0,-105.191 0/0:36:36,0:36:1196:0:0:0,-10.8371,-107.916 0/0:19:19,0:19:652:0:0:0,-5.71957,-58.9933 0/0:23:22,0:22:708:0:0:0,-6.62266,-63.8215 dDocent_Contig_8277 65 . T A 50.3222 . AB=0.2;ABP=18.6449;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=52;DPB=52;DPRA=1.25;EPP=11.6962;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.75;PAIREDR=0.958333;PAO=0;PQA=0;PQR=0;PRO=0;QA=136;QR=1553;RO=48;RPL=4;RPP=11.6962;RPPR=107.241;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 0/1:20:16,4:16:515:4:136:-6.55509,0,-40.638 0/0:13:13,0:13:401:0:0:0,-3.91339,-36.3898 0/0:19:19,0:19:637:0:0:0,-5.71957,-57.6472 dDocent_Contig_8278 31 . G A 702.385 . AB=0.288136;ABP=49.0161;AC=4;AF=0.5;AN=8;AO=34;CIGAR=1X;DP=118;DPB=118;DPRA=0;EPP=76.8404;EPPR=183.243;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=59.5542;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.987952;PAO=0;PQA=0;PQR=0;PRO=0;QA=1241;QR=3045;RO=83;RPL=0;RPP=76.8404;RPPR=183.243;RPR=34;RUN=1;SAF=34;SAP=76.8404;SAR=0;SRF=83;SRP=183.243;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:35:28,6:28:1039:6:229:-10.506,0,-83.373 0/1:36:26,10:26:956:10:367:-22.5399,0,-75.5214 0/1:23:9,14:9:330:14:493:-37.7657,0,-21.9242 0/1:24:20,4:20:720:4:152:-6.8248,0,-57.8994 dDocent_Contig_8279 29 . C G 507.084 . AB=0.333333;ABP=18.2106;AC=3;AF=0.375;AN=8;AO=21;CIGAR=1X;DP=85;DPB=85;DPRA=0.954545;EPP=48.6112;EPPR=141.985;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.90625;PAO=0;PQA=0;PQR=0;PRO=0;QA=822;QR=2587;RO=64;RPL=0;RPP=48.6112;RPPR=141.985;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=64;SRP=141.985;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:16,10:16:650:10:390:-27.6215,0,-51.0067 0/0:22:22,0:22:891:0:0:0,-6.62266,-80.4959 0/1:24:20,4:20:802:4:154:-7.00795,0,-65.2721 0/1:13:6,7:6:244:7:278:-21.477,0,-18.4254 dDocent_Contig_8280 7 . G T 767.562 . AB=0.764706;ABP=23.7032;AC=1;AF=0.125;AN=8;AO=31;CIGAR=1X;DP=122;DPB=122;DPRA=1.43478;EPP=70.3259;EPPR=198.443;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1112;QR=2963;RO=90;RPL=0;RPP=70.3259;RPPR=198.443;RPR=31;RUN=1;SAF=31;SAP=70.3259;SAR=0;SRF=90;SRP=198.443;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:23:23,0:23:765:0:0:0,-6.92369,-69.147 0/0:49:45,3:45:1519:3:89:0,-6.42578,-128.678 0/1:34:8,26:8:264:26:982:-78.455,0,-13.8456 0/0:16:14,2:14:415:2:41:0,-0.921897,-33.7391 dDocent_Contig_8281 73 . G A 231.123 . AB=0.315789;ABP=8.61041;AC=1;AF=0.125;AN=8;AO=6;CIGAR=2X;DP=89;DPB=89;DPRA=0.814286;EPP=16.0391;EPPR=168.042;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=206;QR=2868;RO=76;RPL=6;RPP=16.0391;RPPR=168.042;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=76;SRP=168.042;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:55:55,0,0:55:2057:0,0:0,0:0,-16.5566,-185.369,-16.5566,-185.369,-185.369 0|0:12:11,0,1:11:425:0,1:0,36:0,-3.31133,-38.2424,-0.0140849,-35.3072,-35.0062 0|0:3:0,0,3:0:0:0,3:0,116:-10.8177,-10.8177,-10.8177,-0.90309,-0.90309,0 0|1:19:10,6,3:10:386:6,3:206,113:-13.6912,0,-29.9021,-7.43049,-22.4506,-38.2552 dDocent_Contig_8282 11 . T A 751.687 . AB=0.340659;ABP=23.0785;AC=3;AF=0.375;AN=8;AO=31;CIGAR=1X;DP=96;DPB=96;DPRA=6.06667;EPP=70.3259;EPPR=141.985;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1189;QR=2444;RO=64;RPL=0;RPP=70.3259;RPPR=141.985;RPR=31;RUN=1;SAF=31;SAP=70.3259;SAR=0;SRF=64;SRP=141.985;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:38:24,14:24:933:14:535:-37.0492,0,-72.8407 0/1:35:24,10:24:913:10:391:-24.9122,0,-71.8406 0/1:18:11,7:11:400:7:263:-18.6052,0,-30.9107 0/0:5:5,0:5:198:0:0:0,-1.50515,-18.1969 dDocent_Contig_8283 40 . G T 140.623 . AB=0.555556;ABP=3.25157;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X1M1D4M;DP=44;DPB=43.2857;DPRA=0.771429;EPP=13.8677;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=8.67362e-19;PAIRED=0.8;PAIREDR=0.897436;PAO=0;PQA=0;PQR=0;PRO=0;QA=201;QR=1544;RO=39;RPL=0;RPP=13.8677;RPPR=87.6977;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:11:11,0:11:441:0:0:0,-3.31133,-40.0465 0|1:9:4,5:4:160:5:201:-15.7612,0,-12.0745 0|0:13:13,0:13:518:0:0:0,-3.91339,-46.9683 0|0:11:11,0:11:425:0:0:0,-3.31133,-38.5981 dDocent_Contig_8284 85 . T A 684.076 . AB=0.360465;ABP=17.5541;AC=3;AF=0.375;AN=8;AO=32;CIGAR=1X2M1X;DP=105;DPB=105;DPRA=0;EPP=72.4974;EPPR=159.356;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1133;QR=2611;RO=72;RPL=32;RPP=72.4974;RPPR=159.356;RPR=0;RUN=1;SAF=32;SAP=72.4974;SAR=0;SRF=72;SRP=159.356;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:51:36,14:36:1301:14:489:-28.9295,0,-101.975 0|1:28:13,15:13:469:15:536:-40.1463,0,-34.1182 0|0:19:18,1:18:660:1:36:0,-2.12129,-56.1353 0|1:7:5,2:5:181:2:72:-4.72951,0,-14.536 dDocent_Contig_8285 109 . A T 364.757 . AB=0.483871;ABP=3.08035;AC=2;AF=0.25;AN=8;AO=15;CIGAR=1X;DP=77;DPB=77;DPRA=0.673913;EPP=35.5824;EPPR=137.642;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=539;QR=2178;RO=62;RPL=0;RPP=35.5824;RPPR=137.642;RPR=15;RUN=1;SAF=0;SAP=35.5824;SAR=15;SRF=0;SRP=137.642;SRR=62;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:13:13,0:13:443:0:0:0,-3.91339,-40.1945 0/0:33:33,0:33:1170:0:0:0,-9.93399,-105.607 0/1:19:10,9:10:354:9:323:-23.6955,0,-26.4803 0/1:12:6,6:6:211:6:216:-16.1782,0,-15.7211 dDocent_Contig_8290 70 . G A 224.439 . AB=0;ABP=0;AC=2;AF=0.25;AN=8;AO=7;CIGAR=1X;DP=40;DPB=40;DPRA=0.636364;EPP=18.2106;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=239;QR=1153;RO=33;RPL=7;RPP=18.2106;RPPR=74.6689;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:7:0,7:0:0:7:239:-21.8418,-2.10721,0 0/0:10:10,0:10:361:0:0:0,-3.0103,-32.8339 0/0:6:6,0:6:218:0:0:0,-1.80618,-19.9728 0/0:17:17,0:17:574:0:0:0,-5.11751,-51.9715 dDocent_Contig_8291 19 . T A 74.2781 . AB=0.6;ABP=3.44459;AC=1;AF=0.125;AN=8;AO=3;CIGAR=2X;DP=42;DPB=42;DPRA=0.405405;EPP=9.52472;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.916667;PAO=0;PQA=0;PQR=0;PRO=0;QA=114;QR=1429;RO=36;RPL=0;RPP=9.52472;RPPR=81.1833;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:16:15,0:15:589:0:0:0,-4.51545,-53.0135 0|0:13:12,0:12:476:0:0:0,-3.61236,-42.781 0|1:5:2,3:2:81:3:114:-9.12677,0,-6.18058 0|0:8:7,0:7:283:0:0:0,-2.10721,-25.4343 dDocent_Contig_8292 11 . T C 3515.22 . AB=0.448029;ABP=9.55585;AC=5;AF=0.625;AN=8;AO=125;CIGAR=4M1X;DP=279;DPB=279;DPRA=0;EPP=274.444;EPPR=226.672;GTI=0;LEN=1;MEANALT=3.75;MQM=57.488;MQMR=59.4175;NS=4;NUMALT=4;ODDS=0;PAIRED=0.432;PAIREDR=0.61165;PAO=0;PQA=0;PQR=0;PRO=0;QA=4829;QR=3495;RO=103;RPL=0;RPP=274.444;RPPR=226.672;RPR=125;RUN=1;SAF=125;SAP=274.444;SAR=0;SRF=103;SRP=226.672;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:60:7,4,10,0,39:7:261:4,10,0,39:147,369,0,1508:-123.422,-115.52,-135.482,-102.5,-113.657,-120.654,-125.529,-136.686,-123.664,-146.696,-1.82807,-13.0075,0,-23.0183,-11.2782 0|1:60:14,3,8,0,35:14:483:3,8,0,35:116,287,0,1357:-99.1427,-102.931,-141.259,-80.5056,-119.314,-117.335,-103.357,-142.162,-119.743,-142.593,0,-38.8667,-16.41,-39.2776,-28.7416 0|1:85:37,5,6,5,31:37:1237:5,6,5,31:189,222,147,1211:-88.1617,-83.8041,-182.429,-88.9224,-173.548,-187.237,-87.591,-172.222,-177.331,-186.212,0,-84.6729,-89.7879,-88.4586,-90.8397 0|1:74:45,5,1,3,20:45:1514:5,1,3,20:194,30,41,753:-48.1924,-45.791,-166.931,-59.342,-166.039,-181.681,-58.9766,-165.659,-179.204,-180.699,0,-106.739,-120.287,-119.909,-116.664 dDocent_Contig_8293 197 . G A 409.694 . AB=0.339286;ABP=15.5738;AC=1;AF=0.125;AN=8;AO=19;CIGAR=1X;DP=250;DPB=250;DPRA=0.865979;EPP=44.2683;EPPR=504.62;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=658;QR=8806;RO=231;RPL=19;RPP=44.2683;RPPR=504.62;RPR=0;RUN=1;SAF=0;SAP=44.2683;SAR=19;SRF=0;SRP=504.62;SRR=231;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:139:139,0:139:5265:0:0:0,-41.8432,-473.85 0/0:29:29,0:29:1122:0:0:0,-8.72987,-101.282 0/1:56:37,19:37:1417:19:658:-42.6684,0,-110.95 0/0:26:26,0:26:1002:0:0:0,-7.82678,-90.4905 dDocent_Contig_8294 35 . A G 108.626 . AB=0.233333;ABP=21.5402;AC=2;AF=0.25;AN=8;AO=7;CIGAR=1X;DP=39;DPB=39;DPRA=3.33333;EPP=18.2106;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=58.2857;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=241;QR=1241;RO=32;RPL=0;RPP=18.2106;RPPR=72.4974;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:6:6,0:6:231:0:0:0,-1.80618,-21.1509 0/1:21:15,6:15:599:6:206:-12.5551,0,-47.9283 0/1:9:8,1:8:299:1:35:-0.769498,0,-24.5493 0/0:3:3,0:3:112:0:0:0,-0.90309,-10.4437 dDocent_Contig_8295 34 . G A 918.394 . AB=0.485294;ABP=3.13803;AC=3;AF=0.375;AN=8;AO=33;CIGAR=2X;DP=95;DPB=95;DPRA=0.839506;EPP=74.6689;EPPR=137.642;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1296;QR=2346;RO=62;RPL=0;RPP=74.6689;RPPR=137.642;RPR=33;RUN=1;SAF=33;SAP=74.6689;SAR=0;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:27:27,0:27:999:0:0:0,-8.12781,-90.2154 0|1:47:21,26:21:807:26:1016:-77.5868,0,-58.8038 0|1:14:10,4:10:385:4:159:-10.4775,0,-30.791 0|1:7:4,3:4:155:3:121:-9.17299,0,-12.2181 dDocent_Contig_8297 40 . G A 246.181 . AB=0.275;ABP=20.5992;AC=1;AF=0.125;AN=8;AO=13;CIGAR=1X;DP=122;DPB=122;DPRA=2.05;EPP=31.2394;EPPR=239.701;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=498;QR=4193;RO=109;RPL=0;RPP=31.2394;RPPR=239.701;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=109;SRP=239.701;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:40:29,11:29:1125:11:419:-26.016,0,-89.5022 0/0:42:40,2:40:1558:2:79:0,-5.14602,-132.979 0/0:25:25,0:25:958:0:0:0,-7.52575,-86.5256 0/0:15:15,0:15:552:0:0:0,-4.51545,-50.0008 dDocent_Contig_8298 24 . G T 88.709 . AB=0.266667;ABP=10.1038;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X3M1X;DP=37;DPB=37;DPRA=2.04545;EPP=11.6962;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.818182;PAO=0;PQA=0;PQR=0;PRO=0;QA=160;QR=1256;RO=33;RPL=0;RPP=11.6962;RPPR=74.6689;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:15:11,4:11:419:4:160:-10.2686,0,-33.5463 0|0:2:2,0:2:79:0:0:0,-0.60206,-7.49763 0|0:10:10,0:10:387:0:0:0,-3.0103,-35.1874 0|0:10:10,0:10:371:0:0:0,-3.0103,-33.7374 dDocent_Contig_8299 66 . T G 207.497 . AB=0.290323;ABP=14.8483;AC=2;AF=0.25;AN=8;AO=10;CIGAR=1X1M8D1M;DP=89;DPB=81.7273;DPRA=0.373016;EPP=24.725;EPPR=165.871;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=390;QR=2822;RO=75;RPL=10;RPP=24.725;RPPR=165.871;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=75;SRP=165.871;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:42:41,0:41:1535:0:0:0,-12.3422,-138.039 0|0:16:14,1:14:531:1:41:0,-0.820439,-44.0508 0|1:22:12,8:12:451:8:314:-22.4419,0,-34.7724 0|1:9:8,1:8:305:1:35:-0.789359,0,-25.101 dDocent_Contig_8301 41 . A T 1913.25 . AB=0.131799;ABP=565.885;AC=2;AF=0.25;AN=8;AO=63;CIGAR=6M1X1M2X;DP=478;DPB=483.1;DPRA=0;EPP=139.813;EPPR=608.851;GTI=0;LEN=1;MEANALT=4.25;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2478;QR=10771;RO=279;RPL=0;RPP=139.813;RPPR=608.851;RPR=63;RUN=1;SAF=63;SAP=139.813;SAR=0;SRF=279;SRP=608.851;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:168:102,21,18,24:102:3946:21,18,24:804,709,958:-48.2004,-12.9391,-330.725,-20.5777,-278.719,-339.27,0,-258.144,-265.786,-316.889 0|0:139:94,7,9,28:94:3651:7,9,28:267,354,1066:-59.1246,-65.5173,-363.397,-58.3001,-336.386,-355.58,0,-278.09,-270.875,-291.564 0|1:109:51,15,22,20:51:1968:15,22,20:577,865,796:-55.7978,-23.7855,-180.869,0,-114.233,-154.977,-5.60769,-119.842,-96.0573,-161.189 0|1:62:32,8,14,8:32:1206:8,14,8:314,550,320:-35.6005,-19.411,-115.809,0,-72.9797,-94.5903,-18.8711,-91.8545,-72.441,-115.271 dDocent_Contig_8302 34 . A C 954.087 . 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AB=0.833333;ABP=8.80089;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=56;DPB=56;DPRA=0.6;EPP=16.0391;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=246;QR=1993;RO=50;RPL=0;RPP=16.0391;RPPR=111.584;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:18:18,0:18:722:0:0:0,-5.41854,-65.3059 0/0:17:17,0:17:676:0:0:0,-5.11751,-61.1698 0/1:6:1,5:1:28:5:205:-17.0288,0,-0.993547 0/0:15:14,1:14:567:1:41:0,-0.420883,-47.2773 dDocent_Contig_8306 28 . T A 66.7853 . AB=0.2;ABP=22.5536;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=77;DPB=77;DPRA=1.44231;EPP=13.8677;EPPR=159.356;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=173;QR=2647;RO=72;RPL=0;RPP=13.8677;RPPR=159.356;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=72;SRP=159.356;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:16:16,0:16:600:0:0:0,-4.81648,-54.3372 0/1:25:20,5:20:748:5:173:-8.37749,0,-60.1215 0/0:29:29,0:29:1046:0:0:0,-8.72987,-94.4393 0/0:7:7,0:7:253:0:0:0,-2.10721,-23.117 dDocent_Contig_8307 8 . T A 134.223 . AB=0.615385;ABP=4.51363;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X;DP=65;DPB=65;DPRA=1.5;EPP=22.5536;EPPR=122.441;GTI=0;LEN=1;MEANALT=1.5;MQM=27.1111;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.981818;PAO=0;PQA=0;PQR=0;PRO=0;QA=316;QR=1863;RO=55;RPL=0;RPP=22.5536;RPPR=122.441;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:12:12,0:12:400:0:0:0,-3.61236,-36.3128 0/1:13:5,8:5:193:8:277:-15.1213,0,-13.828 0/0:26:24,1:24:823:1:39:0,-5.43348,-71.9255 0/0:14:14,0:14:447:0:0:0,-4.21442,-40.5294 dDocent_Contig_8308 113 . T A 210.169 . AB=0.322581;ABP=11.486;AC=1;AF=0.125;AN=8;AO=10;CIGAR=1X;DP=89;DPB=89;DPRA=1.60345;EPP=24.725;EPPR=174.557;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=349;QR=2596;RO=79;RPL=0;RPP=24.725;RPPR=174.557;RPR=10;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=174.557;SRR=79;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:21,10:21:716:10:349:-22.4149,0,-55.4262 0/0:23:23,0:23:761:0:0:0,-6.92369,-68.7979 0/0:23:23,0:23:716:0:0:0,-6.92369,-64.731 0/0:12:12,0:12:403:0:0:0,-3.61236,-36.5931 dDocent_Contig_8309 10 . T A 381.856 . AB=0.292308;ABP=27.3642;AC=3;AF=0.375;AN=8;AO=19;CIGAR=1X;DP=72;DPB=72;DPRA=3.09524;EPP=44.2683;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=690;QR=1922;RO=53;RPL=0;RPP=44.2683;RPPR=118.098;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:17,7:17:607:7:260:-16.5302,0,-47.7255 0/1:18:13,5:13:479:5:187:-11.7736,0,-38.0291 0/1:23:16,7:16:588:7:243:-15.2797,0,-46.3246 0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6619 dDocent_Contig_8310 26 . A G 7184.58 . AB=0.352572;ABP=153.474;AC=4;AF=0.5;AN=8;AO=281;CIGAR=1X;DP=797;DPB=797;DPRA=0;EPP=613.194;EPPR=1055.08;GTI=0;LEN=1;MEANALT=1;MQM=57.1708;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.925267;PAIREDR=0.978682;PAO=0;PQA=0;PQR=0;PRO=0;QA=10981;QR=20260;RO=516;RPL=0;RPP=613.194;RPPR=1071.98;RPR=281;RUN=1;SAF=281;SAP=613.194;SAR=0;SRF=508;SRP=1055.08;SRR=8;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:269:171,98:171:6719:98:3827:-253.408,0,-523.506 0/1:189:105,84:105:4115:84:3291:-228.558,0,-313.456 0/1:209:150,59:150:5862:59:2345:-148.298,0,-464.506 0/1:130:90,40:90:3564:40:1518:-95.5922,0,-281.677 dDocent_Contig_8311 122 . T A 161.097 . AB=0.212766;ABP=36.6912;AC=1;AF=0.125;AN=8;AO=10;CIGAR=1X;DP=104;DPB=104;DPRA=2.47368;EPP=24.725;EPPR=207.129;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=348;QR=3190;RO=94;RPL=0;RPP=24.725;RPPR=207.129;RPR=10;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=207.129;SRR=94;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:47:37,10:37:1263:10:348:-17.5076,0,-99.8202 0/0:35:35,0:35:1176:0:0:0,-10.536,-106.139 0/0:13:13,0:13:443:0:0:0,-3.91339,-40.1968 0/0:9:9,0:9:308:0:0:0,-2.70927,-28.0523 dDocent_Contig_8312 23 . A T 260.067 . AB=0.5;ABP=3.0103;AC=1;AF=0.125;AN=8;AO=10;CIGAR=1X;DP=92;DPB=92;DPRA=0.735849;EPP=24.725;EPPR=181.071;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.95122;PAO=0;PQA=0;PQR=0;PRO=0;QA=394;QR=3254;RO=82;RPL=0;RPP=24.725;RPPR=181.071;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=82;SRP=181.071;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:21:20,1:20:807:1:30:0,-3.32206,-69.947 0/0:26:26,0:26:1042:0:0:0,-7.82678,-94.0728 0/0:27:27,0:27:1073:0:0:0,-8.12781,-96.8632 0/1:18:9,9:9:332:9:364:-27.7056,0,-24.8036 dDocent_Contig_8314 109 . T C 369.512 . AB=0.30303;ABP=25.2514;AC=4;AF=0.5;AN=8;AO=20;CIGAR=1X;DP=66;DPB=66;DPRA=0;EPP=46.4397;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=698;QR=1556;RO=46;RPL=0;RPP=46.4397;RPPR=102.898;RPR=20;RUN=1;SAF=0;SAP=46.4397;SAR=20;SRF=0;SRP=102.898;SRR=46;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:21,3:21:716:3:105:-2.57144,0,-57.5324 0/1:17:14,3:14:458:3:103:-4.49246,0,-36.4164 0/1:8:5,3:5:173:3:105:-7.38792,0,-13.502 0/1:17:6,11:6:209:11:385:-29.8688,0,-14.0335 dDocent_Contig_8316 47 . A T 33.4273 . AB=0.171429;ABP=35.8306;AC=1;AF=0.125;AN=8;AO=10;CIGAR=1X;DP=117;DPB=117;DPRA=3.33333;EPP=24.725;EPPR=235.358;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=302;QR=3989;RO=107;RPL=0;RPP=24.725;RPPR=235.358;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=107;SRP=235.358;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:55:51,4:51:1947:4:132:0,-4.35047,-163.258 0/1:35:29,6:29:1075:6:170:-5.0415,0,-86.5075 0/0:19:19,0:19:659:0:0:0,-5.71957,-59.6125 0/0:8:8,0:8:308:0:0:0,-2.40824,-28.082 dDocent_Contig_8317 15 . G C 57.9771 . AB=0;ABP=0;AC=0;AF=0;AN=8;AO=2;CIGAR=1X2M1X2M1X2M1X2M;DP=84;DPB=84;DPRA=2.66667;EPP=7.35324;EPPR=130.072;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=4;NUMALT=5;ODDS=6.93889e-18;PAIRED=1;PAIREDR=0.914286;PAO=0;PQA=0;PQR=0;PRO=0;QA=77;QR=2671;RO=70;RPL=0;RPP=7.35324;RPPR=155.013;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=67;SRP=130.072;SRR=3;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:19:13,0,3,0,0,2:13:493:0,3,0,0,2:0,104,0,0,82:-4.51718,-8.43057,-48.8552,0,-40.41,-39.507,-8.43057,-48.8552,-40.41,-48.8552,-8.43057,-48.8552,-40.41,-48.8552,-48.8552,-1.64085,-42.083,-33.6377,-42.083,-42.083,-41.4809 0|0:10:8,0,0,0,2,0:8:304:0,0,0,2,0:0,0,0,81,0:-4.67543,-7.08367,-31.988,-7.08367,-31.988,-31.988,-7.08367,-31.988,-31.988,-31.988,0,-25.3039,-25.3039,-25.3039,-24.7018,-7.08367,-31.988,-31.988,-31.988,-25.3039,-31.988 0|0:15:15,0,0,0,0,0:15:585:0,0,0,0,0:0,0,0,0,0:0,-4.51545,-52.9901,-4.51545,-52.9901,-52.9901,-4.51545,-52.9901,-52.9901,-52.9901,-4.51545,-52.9901,-52.9901,-52.9901,-52.9901,-4.51545,-52.9901,-52.9901,-52.9901,-52.9901,-52.9901 0|0:40:34,2,0,2,0,0:34:1289:2,0,2,0,0:77,0,79,0,0:0,-3.91646,-108.979,-10.235,-109.581,-115.904,-3.73293,-103.079,-109.402,-108.8,-10.235,-109.581,-115.904,-109.402,-115.904,-10.235,-109.581,-115.904,-109.402,-115.904,-115.904 dDocent_Contig_8318 20 . G T 574.555 . AB=0.333333;ABP=18.9344;AC=2;AF=0.25;AN=8;AO=22;CIGAR=1X;DP=81;DPB=81;DPRA=4.4;EPP=50.7827;EPPR=128.956;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=889;QR=2271;RO=58;RPL=0;RPP=50.7827;RPPR=128.956;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:37:28,9:28:1105:9:366:-22.1668,0,-88.5954 0/1:29:16,13:16:625:13:523:-38.6863,0,-47.8503 0/0:13:12,0:12:462:0:0:0,-3.61236,-41.6876 0/0:2:2,0:2:79:0:0:0,-0.60206,-7.49724 dDocent_Contig_8319 107 . N T 199.186 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=8;CIGAR=1X;DP=8;DPB=8;DPRA=0;EPP=20.3821;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=206;QR=0;RO=0;RPL=0;RPP=20.3821;RPPR=0;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:50:-4.74971,-0.60206,0 1/1:5:0,5:0:0:5:129:-11.866,-1.50515,0 1/1:1:0,1:0:0:1:27:-2.69978,-0.30103,0 ./.:.:.:.:.:.:.:. dDocent_Contig_8321 49 . A G 1352.68 . AB=0.418803;ABP=9.71031;AC=4;AF=0.5;AN=8;AO=49;CIGAR=1X;DP=117;DPB=117;DPRA=0;EPP=109.412;EPPR=150.67;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1961;QR=2660;RO=68;RPL=0;RPP=109.412;RPPR=150.67;RPR=49;RUN=1;SAF=49;SAP=109.412;SAR=0;SRF=68;SRP=150.67;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:39:16,23:16:637:23:923:-71.632,0,-45.9253 0/1:34:19,15:19:746:15:590:-43.1956,0,-57.2248 0/1:32:27,5:27:1036:5:205:-9.20205,0,-83.886 0/1:12:6,6:6:241:6:243:-18.6358,0,-18.4539 dDocent_Contig_8322 105 . N T 178.592 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=6;CIGAR=3X;DP=6;DPB=6;DPRA=0;EPP=16.0391;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=188;QR=0;RO=0;RPL=0;RPP=16.0391;RPPR=0;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. 1|1:4:0,4:0:0:4:119:-11.0049,-1.20412,0 .:.:.:.:.:.:.:. 1|1:2:0,2:0:0:2:69:-6.55266,-0.60206,0 dDocent_Contig_8323 107 . N T 295.01 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=9;CIGAR=1X;DP=9;DPB=9;DPRA=0;EPP=22.5536;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=1.69407e-21;PAIRED=0.777778;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=311;QR=0;RO=0;RPL=0;RPP=22.5536;RPPR=0;RPR=9;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1:0,1:0:0:1:35:-3.49863,-0.30103,0 1/1:6:0,6:0:0:6:206:-18.8767,-1.80618,0 1/1:2:0,2:0:0:2:70:-6.6474,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_8324 49 . G T 55.5909 . AB=0.153846;ABP=30.0702;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=73;DPB=73;DPRA=1.65957;EPP=11.6962;EPPR=152.842;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.985507;PAO=0;PQA=0;PQR=0;PRO=0;QA=160;QR=2756;RO=69;RPL=0;RPP=11.6962;RPPR=152.842;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=69;SRP=152.842;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:22,4:22:878:4:160:-6.95702,0,-71.5031 0/0:9:9,0:9:359:0:0:0,-2.70927,-32.6737 0/0:25:25,0:25:996:0:0:0,-7.52575,-89.938 0/0:13:13,0:13:523:0:0:0,-3.91339,-47.4171 dDocent_Contig_8325 74 . T C 1949.11 . AB=0.217391;ABP=146.611;AC=2;AF=0.25;AN=8;AO=45;CIGAR=7M1X16M;DP=207;DPB=205.417;DPRA=0;EPP=100.727;EPPR=65.983;GTI=0;LEN=1;MEANALT=14.75;MQM=60;MQMR=60;NS=4;NUMALT=7;ODDS=0;PAIRED=0.977778;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1676;QR=938;RO=29;RPL=45;RPP=100.727;RPPR=65.983;RPR=0;RUN=1;SAF=45;SAP=100.727;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:81:11,0,0,15,6,3,0,30:11:354:0,0,15,6,3,0,30:0,0,510,196,110,0,1109:-100.264,-103.576,-132.117,-103.576,-132.117,-132.117,-62.2039,-90.7461,-90.7461,-86.2306,-87.746,-116.287,-116.287,-74.916,-114.481,-94.5842,-123.126,-123.126,-81.7543,-107.296,-122.223,-103.576,-132.117,-132.117,-90.7461,-116.287,-123.126,-132.117,-12.8371,-41.3864,-41.3864,0,-25.5527,-32.3923,-41.3864,-32.3555 0|0:51:8,0,1,14,0,2,8,4:8:264:0,1,14,0,2,8,4:0,31,476,0,74,301,146:-39.5541,-41.9623,-63.3143,-39.4733,-60.8255,-60.5245,-3.33025,-24.6904,-22.201,-20.476,-41.9623,-63.3143,-60.8255,-24.6904,-63.3143,-35.9042,-57.2571,-54.7683,-18.631,-57.2571,-56.6551,-17.2791,-38.6362,-36.1469,0,-38.6362,-32.5777,-36.2279,-30.028,-51.3819,-48.893,-12.7533,-51.3819,-45.3242,-26.701,-50.1778 0|0:41:4,12,0,7,1,3,0,5:4:119:12,0,7,1,3,0,5:428,0,235,34,103,0,190:-43.2682,-9.54968,-15.4474,-44.4723,-19.0597,-53.9771,-25.4257,0,-34.9322,-32.825,-41.7128,-16.2988,-51.2178,-32.1723,-50.9168,-36.1037,-10.6863,-45.6091,-26.5622,-42.8496,-44.706,-44.4723,-19.0597,-53.9771,-34.9322,-51.2178,-45.6091,-53.9771,-28.8754,-3.45213,-38.3821,-19.3322,-35.6222,-30.0122,-38.3821,-36.8769 0|1:34:6,4,3,2,0,7,1,6:6:201:4,3,2,0,7,1,6:135,95,63,0,227,35,231:-19.2207,-10.0794,-25.1612,-13.3806,-18.7194,-28.7624,-15.9593,-21.2979,-24.5983,-31.6418,-21.0269,-26.3653,-29.6655,-32.2439,-37.3109,-2.70266,-8.0423,-11.3436,-13.9223,-18.9898,-16.8826,-18.1774,-23.516,-26.8164,-29.3948,-34.4619,-16.1403,-34.1609,-2.0377,-7.37848,-10.6802,-13.2594,-18.3278,0,-15.4779,-16.5216 dDocent_Contig_8327 54 . C T 230.192 . AB=0.34375;ABP=9.79615;AC=1;AF=0.125;AN=8;AO=11;CIGAR=1X;DP=73;DPB=73;DPRA=2.34146;EPP=26.8965;EPPR=137.642;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.727273;PAIREDR=0.806452;PAO=0;PQA=0;PQR=0;PRO=0;QA=378;QR=2153;RO=62;RPL=11;RPP=26.8965;RPPR=137.642;RPR=0;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:9:9,0:9:318:0:0:0,-2.70927,-28.9593 0/1:32:21,11:21:732:11:378:-24.7179,0,-56.5692 0/0:2:2,0:2:70:0:0:0,-0.60206,-6.64733 0/0:30:30,0:30:1033:0:0:0,-9.0309,-93.2809 dDocent_Contig_8328 146 . T G 36.7283 . AB=0.25;ABP=7.35324;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X;DP=37;DPB=37;DPRA=0.827586;EPP=7.35324;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=1401;RO=35;RPL=0;RPP=7.35324;RPPR=79.0118;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=79.0118;SRR=35;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:18:18,0:18:714:0:0:0,-5.41854,-64.5809 0/0:2:2,0:2:81:0:0:0,-0.60206,-7.68573 0/0:9:9,0:9:363:0:0:0,-2.70927,-33.0344 0/1:8:6,2:6:243:2:82:-5.37144,0,-19.8399 dDocent_Contig_8329 65 . C A 275.176 . AB=0.205882;ABP=54.1038;AC=1;AF=0.125;AN=8;AO=14;CIGAR=1X;DP=133;DPB=133;DPRA=3.13846;EPP=33.4109;EPPR=261.416;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=545;QR=4659;RO=119;RPL=14;RPP=33.4109;RPPR=261.416;RPR=0;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=119;SRP=261.416;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:68:54,14:54:2141:14:545:-28.9156,0,-172.411 0/0:25:25,0:25:961:0:0:0,-7.52575,-86.7837 0/0:17:17,0:17:651:0:0:0,-5.11751,-58.9172 0/0:23:23,0:23:906:0:0:0,-6.92369,-81.8503 dDocent_Contig_8330 141 . T A 363.413 . AB=0.18797;ABP=115.486;AC=2;AF=0.25;AN=8;AO=26;CIGAR=1X;DP=189;DPB=189;DPRA=1.16667;EPP=59.4686;EPPR=356.96;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=912;QR=5567;RO=163;RPL=0;RPP=59.4686;RPPR=356.96;RPR=26;RUN=1;SAF=0;SAP=59.4686;SAR=26;SRF=0;SRP=356.96;SRR=163;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:42:42,0:42:1443:0:0:0,-12.6433,-130.161 0/1:110:92,18:92:3159:18:632:-24.0906,0,-251.423 0/1:23:16,7:16:528:7:247:-15.6485,0,-40.9091 0/0:14:13,1:13:437:1:33:0,-0.915285,-36.3528 dDocent_Contig_8331 18 . A G 506.879 . AB=0.214876;ABP=88.4515;AC=3;AF=0.375;AN=8;AO=26;CIGAR=1X;DP=149;DPB=149;DPRA=1.44048;EPP=59.4686;EPPR=270.101;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1016;QR=4863;RO=123;RPL=0;RPP=59.4686;RPPR=270.101;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=123;SRP=270.101;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:57:43,14:43:1708:14:552:-32.8626,0,-136.789 0/1:46:39,7:39:1550:7:259:-9.80679,0,-125.89 0/0:28:28,0:28:1080:0:0:0,-8.42884,-97.4878 0/1:18:13,5:13:525:5:205:-13.4165,0,-42.1781 dDocent_Contig_8332 45 . G A 32.8098 . AB=0.1875;ABP=16.582;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X2M2X;DP=66;DPB=66;DPRA=0.941176;EPP=11.6962;EPPR=133.299;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=139;QR=1965;RO=60;RPL=0;RPP=11.6962;RPPR=133.299;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:11:10,0:10:328:0:0:0,-3.0103,-29.4833 0|1:16:13,3:13:434:3:105:-4.97968,0,-34.5655 0|0:23:22,0:22:734:0:0:0,-6.62266,-66.0437 0|0:16:15,1:15:469:1:34:0,-1.41757,-39.1137 dDocent_Contig_8333 198 . T G 260.046 . AB=0.245902;ABP=37.2199;AC=3;AF=0.375;AN=8;AO=15;CIGAR=1X;DP=70;DPB=70;DPRA=2.25926;EPP=35.5824;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=541;QR=2048;RO=55;RPL=15;RPP=35.5824;RPPR=122.441;RPR=0;RUN=1;SAF=0;SAP=35.5824;SAR=15;SRF=0;SRP=122.441;SRR=55;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:9:9,0:9:331:0:0:0,-2.70927,-30.1365 0/1:43:35,8:35:1306:8:269:-11.5853,0,-104.883 0/1:7:4,3:4:149:3:117:-8.80317,0,-11.6663 0/1:11:7,4:7:262:4:155:-11.0141,0,-20.6249 dDocent_Contig_8334 107 . N A 1750.91 . AB=0.469697;ABP=3.53672;AC=8;AF=1;AN=8;AO=31;CIGAR=1X3M;DP=66;DPB=69.75;DPRA=0;EPP=70.3259;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=0;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1042;QR=0;RO=0;RPL=0;RPP=70.3259;RPPR=0;RPR=31;RUN=1;SAF=0;SAP=70.3259;SAR=31;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:32:0,19,13:0:0:19,13:658,445:-89.5923,-36.1141,-30.3946,-53.4716,0,-49.5583 1|1:19:0,6,13:0:0:6,13:204,424:-50.7638,-34.2145,-32.4083,-16.5399,0,-12.6265 1|1:7:0,6,1:0:0:6,1:209,35:-19.8355,-2.84441,-1.03823,-16.988,0,-16.6869 1|1:8:0,4,4:0:0:4,4:126,138:-21.3243,-11.2048,-10.0007,-10.1062,0,-8.90206 dDocent_Contig_8336 7 . G C 965.278 . AB=0.607143;ABP=8.59409;AC=3;AF=0.375;AN=8;AO=34;CIGAR=1X;DP=84;DPB=84;DPRA=0.666667;EPP=76.8404;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1308;QR=1652;RO=50;RPL=0;RPP=76.8404;RPPR=111.584;RPR=34;RUN=1;SAF=34;SAP=76.8404;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:28:28,0:28:890:0:0:0,-8.42884,-80.3797 0/1:35:9,26:9:296:26:997:-79.5042,0,-16.419 0/1:15:10,5:10:372:5:194:-13.3174,0,-29.3114 0/1:6:3,3:3:94:3:117:-9.1042,0,-6.96072 dDocent_Contig_8337 30 . A G 490.328 . AB=0.344828;ABP=15.1406;AC=4;AF=0.5;AN=8;AO=20;CIGAR=1X;DP=58;DPB=58;DPRA=0;EPP=46.4397;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=797;QR=1476;RO=38;RPL=0;RPP=46.4397;RPPR=85.5263;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:15,4:15:594:4:163:-9.33886,0,-48.0784 0/1:17:13,4:13:506:4:161:-9.75797,0,-40.7647 0/1:13:9,4:9:335:4:163:-11.145,0,-26.576 0/1:9:1,8:1:41:8:310:-25.5485,0,-1.3853 dDocent_Contig_8338 22 . C T 77.2915 . AB=0.133333;ABP=73.0765;AC=3;AF=0.375;AN=8;AO=8;CIGAR=1X;DP=83;DPB=83;DPRA=0.869565;EPP=20.3821;EPPR=165.871;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.8133;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.973333;PAO=0;PQA=0;PQR=0;PRO=0;QA=319;QR=3014;RO=75;RPL=0;RPP=20.3821;RPPR=165.871;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=75;SRP=165.871;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:23:23,0:23:927:0:0:0,-6.92369,-83.7331 0/1:11:10,1:10:404:1:40:-0.684349,0,-33.4085 0/1:32:28,4:28:1112:4:164:-5.51694,0,-90.6647 0/1:17:14,3:14:571:3:115:-5.60487,0,-46.6144 dDocent_Contig_8339 22 . C T 40.8118 . AB=0.114286;ABP=93.4676;AC=2;AF=0.25;AN=8;AO=12;CIGAR=1X;DP=161;DPB=161;DPRA=1.65432;EPP=29.068;EPPR=326.56;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.666667;PAIREDR=0.95302;PAO=0;PQA=0;PQR=0;PRO=0;QA=457;QR=5887;RO=149;RPL=0;RPP=29.068;RPPR=326.56;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=149;SRP=326.56;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:27:27,0:27:1071:0:0:0,-8.12781,-96.6808 0/0:64:60,4:60:2373:4:155:0,-4.94116,-199.41 0/1:49:43,6:43:1715:6:224:-5.7672,0,-139.823 0/1:21:19,2:19:728:2:78:-1.08184,0,-59.5185 dDocent_Contig_8340 16 . G T 57.4204 . AB=0.16;ABP=28.1125;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X;DP=183;DPB=183;DPRA=1.03333;EPP=22.5536;EPPR=380.846;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.994253;PAO=0;PQA=0;PQR=0;PRO=0;QA=363;QR=6887;RO=174;RPL=0;RPP=22.5536;RPPR=380.846;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=174;SRP=380.846;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:71:71,0:71:2813:0:0:0,-21.3731,-253.281 0/0:68:63,5:63:2502:5:201:0,-1.99952,-206.854 0/1:25:21,4:21:836:4:162:-7.441,0,-68.0271 0/0:19:19,0:19:736:0:0:0,-5.71957,-66.5586 dDocent_Contig_8341 22 . G C 179.788 . AB=0.307692;ABP=11.3621;AC=2;AF=0.25;AN=8;AO=9;CIGAR=1X;DP=55;DPB=55;DPRA=1.33333;EPP=22.5536;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=356;QR=1832;RO=46;RPL=0;RPP=22.5536;RPPR=102.898;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:11,0:11:443:0:0:0,-3.31133,-40.2248 0/1:23:17,6:17:684:6:238:-14.8696,0,-54.9656 0/0:18:17,1:17:664:1:40:0,-1.42286,-56.0905 0/1:3:1,2:1:41:2:78:-6.50021,0,-3.19148 dDocent_Contig_8342 21 . T G 1318.72 . AB=0.511111;ABP=3.10681;AC=4;AF=0.5;AN=8;AO=46;CIGAR=1X;DP=90;DPB=90;DPRA=0;EPP=102.898;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1816;QR=1772;RO=44;RPL=0;RPP=102.898;RPPR=98.5551;RPR=46;RUN=1;SAF=46;SAP=102.898;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:39:13,26:13:525:26:1036:-81.7917,0,-35.8562 0/1:22:13,9:13:518:9:345:-24.7773,0,-40.341 0/1:17:7,10:7:281:10:394:-30.6976,0,-20.5436 0/1:12:11,1:11:448:1:41:-0.482207,0,-37.063 dDocent_Contig_8343 73 . G A 864.689 . AB=0.46988;ABP=3.66436;AC=4;AF=0.5;AN=8;AO=39;CIGAR=1X2M1X;DP=83;DPB=83;DPRA=0;EPP=87.6977;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1304;QR=1454;RO=43;RPL=39;RPP=87.6977;RPPR=96.3836;RPR=0;RUN=1;SAF=39;SAP=87.6977;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:24:6,18:6:205:18:581:-45.3719,0,-11.5606 0|1:28:23,4:23:773:4:139:-4.59941,0,-61.6758 0|1:17:10,7:10:341:7:238:-16.6352,0,-25.9033 0|1:14:4,10:4:135:10:346:-27.2601,0,-8.2692 dDocent_Contig_8344 62 . T A 803.376 . AB=0.330645;ABP=33.9012;AC=3;AF=0.375;AN=8;AO=42;CIGAR=1X;DP=144;DPB=144;DPRA=0;EPP=94.2121;EPPR=224.5;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1388;QR=3705;RO=102;RPL=42;RPP=94.2121;RPPR=224.5;RPR=0;RUN=1;SAF=42;SAP=94.2121;SAR=0;SRF=102;SRP=224.5;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:60:47,13:47:1711:13:427:-20.6841,0,-136.206 0/1:44:24,20:24:881:20:686:-48.8146,0,-66.3662 0/0:20:19,1:19:680:1:31:0,-2.92115,-58.428 0/1:20:12,8:12:433:8:244:-16.2369,0,-33.2901 dDocent_Contig_8345 7 . G A 99.4445 . AB=0.1875;ABP=30.1537;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=66;DPB=66;DPRA=2.82353;EPP=16.0391;EPPR=133.299;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=229;QR=1898;RO=60;RPL=0;RPP=16.0391;RPPR=133.299;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:32:26,6:26:800:6:229:-11.3423,0,-62.6352 0/0:21:21,0:21:661:0:0:0,-6.32163,-59.7843 0/0:8:8,0:8:276:0:0:0,-2.40824,-25.1713 0/0:5:5,0:5:161:0:0:0,-1.50515,-14.8052 dDocent_Contig_8346 24 . T C 211.965 . AB=0.5;ABP=3.0103;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X2M4D5M;DP=42;DPB=39.3333;DPRA=1.23077;EPP=20.3821;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=302;QR=1333;RO=34;RPL=0;RPP=20.3821;RPPR=76.8404;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:16:8,8:8:317:8:302:-22.7194,0,-24.0802 0|0:16:16,0:16:634:0:0:0,-4.81648,-57.3982 0|0:10:10,0:10:382:0:0:0,-3.0103,-34.7346 .:.:.:.:.:.:.:. dDocent_Contig_8347 10 . C G 35.8725 . AB=0.176471;ABP=18.4661;AC=2;AF=0.25;AN=8;AO=3;CIGAR=1X;DP=25;DPB=25;DPRA=2.125;EPP=9.52472;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.333333;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=117;QR=837;RO=22;RPL=0;RPP=9.52472;RPPR=50.7827;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:8,1:8:301:1:36:-0.889005,0,-24.7339 0/1:8:6,2:6:241:2:81:-5.27749,0,-19.6581 0/0:6:6,0:6:215:0:0:0,-1.80618,-19.6908 0/0:2:2,0:2:80:0:0:0,-0.60206,-7.59157 dDocent_Contig_8348 30 . C G 52.9734 . AB=0.230769;ABP=11.1951;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=161;DPB=161;DPRA=0.263514;EPP=9.52472;EPPR=346.103;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=117;QR=6155;RO=158;RPL=0;RPP=9.52472;RPPR=346.103;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=158;SRP=346.103;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:58:58,0:58:2229:0:0:0,-17.4597,-200.789 0/0:77:77,0:77:3016:0:0:0,-23.1793,-271.534 0/0:13:13,0:13:515:0:0:0,-3.91339,-46.6929 0/1:13:10,3:10:395:3:117:-6.99631,0,-31.9936 dDocent_Contig_8349 44 . G A 92.6918 . AB=0.148936;ABP=53.3238;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=157;DPB=157;DPRA=1.49206;EPP=20.3821;EPPR=326.56;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=316;QR=5903;RO=149;RPL=0;RPP=20.3821;RPPR=326.56;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=149;SRP=326.56;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:29:29,0:29:1167:0:0:0,-8.72987,-105.305 0/0:47:46,1:46:1818:1:41:0,-10.0538,-159.747 0/1:47:40,7:40:1579:7:275:-10.9682,0,-128.188 0/0:34:34,0:34:1339:0:0:0,-10.235,-120.771 dDocent_Contig_8350 76 . A G 329.463 . AB=0.326923;ABP=16.5402;AC=3;AF=0.5;AN=6;AO=17;CIGAR=1X;DP=52;DPB=52;DPRA=0;EPP=39.9253;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=590;QR=1212;RO=35;RPL=17;RPP=39.9253;RPPR=79.0118;RPR=0;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 0/1:13:6,7:6:215:7:242:-18.2043,0,-15.7858 0/1:29:22,7:22:762:7:243:-13.479,0,-60.1693 0/1:10:7,3:7:235:3:105:-6.78586,0,-18.4665 dDocent_Contig_8352 70 . A G 737.854 . AB=0.407407;ABP=9.04217;AC=4;AF=0.5;AN=8;AO=33;CIGAR=1X;DP=81;DPB=81;DPRA=0;EPP=26.7649;EPPR=105.07;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1156;QR=1613;RO=47;RPL=33;RPP=74.6689;RPPR=105.07;RPR=0;RUN=1;SAF=26;SAP=26.7649;SAR=7;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:3,6:3:105:6:204:-15.9841,0,-7.08689 0/1:21:7,14:7:244:14:495:-38.5604,0,-15.9784 0/1:22:14,7:14:471:7:250:-16.4004,0,-36.2832 0/1:29:23,6:23:793:6:207:-10.2384,0,-62.959 dDocent_Contig_8353 18 . G A 69.3895 . AB=0.190476;ABP=20.4855;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=35;DPB=35;DPRA=3;EPP=11.6962;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=160;QR=1245;RO=31;RPL=0;RPP=11.6962;RPPR=70.3259;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:17,4:17:683:4:160:-8.4618,0,-55.477 ./.:.:.:.:.:.:.:. 0/0:6:6,0:6:242:0:0:0,-1.80618,-22.1569 0/0:8:8,0:8:320:0:0:0,-2.40824,-29.1672 dDocent_Contig_8354 93 . C A 263.249 . AB=0.237288;ABP=38.3795;AC=2;AF=0.25;AN=8;AO=14;CIGAR=1X;DP=71;DPB=71;DPRA=4.91667;EPP=33.4109;EPPR=126.784;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=500;QR=1945;RO=57;RPL=14;RPP=33.4109;RPPR=126.784;RPR=0;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:37:25,12:25:852:12:428:-27.721,0,-65.8537 0/1:22:20,2:20:674:2:72:-0.214063,0,-54.3519 0/0:7:7,0:7:250:0:0:0,-2.10721,-22.8468 0/0:5:5,0:5:169:0:0:0,-1.50515,-15.5428 dDocent_Contig_8355 26 . T C 670.45 . AB=0.416667;ABP=6.62942;AC=4;AF=0.5;AN=8;AO=25;CIGAR=1X;DP=60;DPB=60;DPRA=0;EPP=57.2971;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=0.64;PAIREDR=0.885714;PAO=0;PQA=0;PQR=0;PRO=0;QA=1011;QR=1389;RO=35;RPL=0;RPP=57.2971;RPPR=79.0118;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:5,7:5:204:7:287:-22.5929,0,-15.1317 0/1:11:5,6:5:198:6:241:-18.7551,0,-14.8851 0/1:15:13,2:13:502:2:81:-3.17028,0,-41.0004 0/1:22:12,10:12:485:10:402:-29.9174,0,-37.3782 dDocent_Contig_8356 19 . G T 51.3544 . AB=0.25;ABP=9.52472;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=74;DPB=74;DPRA=0.580645;EPP=9.52472;EPPR=157.185;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.971831;PAO=0;PQA=0;PQR=0;PRO=0;QA=112;QR=2817;RO=71;RPL=0;RPP=9.52472;RPPR=157.185;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=71;SRP=157.185;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:43:43,0:43:1712:0:0:0,-12.9443,-154.302 0/1:12:9,3:9:363:3:112:-6.83413,0,-29.4219 0/0:17:17,0:17:661:0:0:0,-5.11751,-59.8183 0/0:2:2,0:2:81:0:0:0,-0.60206,-7.68573 dDocent_Contig_8357 69 . C T 773.749 . AB=0.238298;ABP=142.807;AC=4;AF=0.5;AN=8;AO=56;CIGAR=1X;DP=235;DPB=235;DPRA=0;EPP=124.613;EPPR=385.189;GTI=0;LEN=1;MEANALT=1.75;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1708;QR=6432;RO=176;RPL=56;RPP=124.613;RPPR=385.189;RPR=0;RUN=1;SAF=56;SAP=124.613;SAR=0;SRF=176;SRP=385.189;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:105:81,24:81:2977:24:777:-38.6208,0,-236.499 0/1:78:56,22:56:2115:22:629:-33.4007,0,-167.106 0/1:34:28,4:28:1012:4:129:-2.03502,0,-81.5066 0/1:18:11,6:11:328:6:173:-10.6262,0,-24.5888 dDocent_Contig_8358 11 . C T 2932.74 . AB=0.396907;ABP=20.9194;AC=3;AF=0.375;AN=8;AO=77;CIGAR=2X;DP=194;DPB=194;DPRA=0;EPP=170.214;EPPR=126.784;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.974026;PAIREDR=0.982456;PAO=0;PQA=0;PQR=0;PRO=0;QA=3044;QR=2199;RO=57;RPL=0;RPP=170.214;RPPR=126.784;RPR=77;RUN=1;SAF=77;SAP=170.214;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:62:26,16,20:26:1020:16,20:625,803:-58.344,-14.7978,-93.8575,0,-32.5053,-77.8618 0|1:55:17,28,10:17:646:28,10:1122,402:-87.3175,0,-44.5234,-59.3078,-19.8172,-109.256 1|0:52:10,26,16:10:375:26,16:1024,616:-101.098,-19.8685,-42.7512,-53.5398,0,-79.4314 1|0:25:4,7,14:4:158:7,14:273,555:-53.9121,-32.6791,-43.5728,-9.43302,0,-18.2217 dDocent_Contig_8359 41 . G A 643.273 . AB=0.358209;ABP=14.7103;AC=3;AF=0.375;AN=8;AO=25;CIGAR=4X1M1X;DP=82;DPB=82;DPRA=0;EPP=57.2971;EPPR=122.441;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1001;QR=2130;RO=55;RPL=0;RPP=57.2971;RPPR=122.441;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:49:28,19:28:1081:19:761:-54.4113,0,-83.1875 0|1:13:12,1:12:471:1:40:-0.0822893,0,-38.8268 0|1:5:1,4:1:40:4:160:-13.2787,0,-2.49053 0|0:15:14,1:14:538:1:40:0,-0.519771,-44.7651 dDocent_Contig_8360 67 . C T 386.697 . AB=0.404255;ABP=6.75262;AC=4;AF=0.5;AN=8;AO=19;CIGAR=1X;DP=47;DPB=47;DPRA=0;EPP=44.2683;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=654;QR=942;RO=28;RPL=19;RPP=44.2683;RPPR=63.8115;RPR=0;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:9,7:9:302:7:242:-17.3012,0,-22.6896 0/1:14:9,5:9:314:5:169:-11.3286,0,-24.3835 0/1:8:6,2:6:203:2:69:-4.14442,0,-16.1939 0/1:9:4,5:4:123:5:174:-13.2927,0,-8.66466 dDocent_Contig_8361 7 . G A 7145.05 . AB=0.827839;ABP=257.868;AC=4;AF=0.5;AN=8;AO=226;CIGAR=2X;DP=273;DPB=273;DPRA=0;EPP=493.763;EPPR=68.1545;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.915929;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=8637;QR=924;RO=30;RPL=0;RPP=493.763;RPPR=68.1545;RPR=226;RUN=1;SAF=226;SAP=493.763;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:99:16,78,3:16:465:78,3:2977,101:-239.477,0,-13.5094,-236.116,-28.8043,-272.216 1|0:77:1,65,9:1:38:65,9:2488,305:-225.559,-21.6238,-5.1791,-201.182,0,-201.59 0|1:60:7,52,0:7:235:52,0:1999,0:-162.136,0,-3.45263,-164.243,-19.1062,-183.269 0|1:37:6,31,0:6:186:31,0:1173,0:-94.7272,0,-5.90386,-96.5334,-15.2358,-111.448 dDocent_Contig_8362 117 . A C 47.0957 . AB=0.235294;ABP=13.3567;AC=2;AF=0.25;AN=8;AO=4;CIGAR=1X;DP=51;DPB=51;DPRA=0.5;EPP=11.6962;EPPR=102.898;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=138;QR=1461;RO=46;RPL=0;RPP=11.6962;RPPR=102.898;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=102.898;SRR=46;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:5:3,2:3:101:2:70:-5.14225,0,-7.91862 0/0:9:9,0:9:270:0:0:0,-2.70927,-24.5944 0/1:12:9,2:9:297:2:68:-2.95325,0,-23.599 0/0:25:25,0:25:793:0:0:0,-7.52575,-71.6648 dDocent_Contig_8364 72 . A T 150.349 . AB=0.333333;ABP=8.07707;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=62;DPB=62;DPRA=1.13793;EPP=20.3821;EPPR=120.27;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=285;QR=1976;RO=54;RPL=8;RPP=20.3821;RPPR=120.27;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:14,7:14:510:7:249:-16.4312,0,-39.9161 0/0:28:28,0:28:1027:0:0:0,-8.42884,-92.7392 0/0:12:11,1:11:403:1:36:0,-0.0140849,-33.0161 0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827 dDocent_Contig_8365 23 . T C 532.196 . AB=0.291667;ABP=30.1537;AC=1;AF=0.125;AN=8;AO=28;CIGAR=1X;DP=304;DPB=304;DPRA=1.11429;EPP=63.8115;EPPR=595.822;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1125;QR=10926;RO=273;RPL=0;RPP=63.8115;RPPR=595.822;RPR=28;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=273;SRP=595.822;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:70:70,0:70:2829:0:0:0,-21.0721,-254.707 0/0:63:59,4:59:2381:4:159:0,-4.27344,-199.744 0/0:99:95,3:95:3772:3:121:0,-18.6288,-328.207 0/1:72:49,21:49:1944:21:845:-54.9186,0,-153.714 dDocent_Contig_8368 54 . T C 240.588 . AB=0.235294;ABP=34.0496;AC=3;AF=0.375;AN=8;AO=12;CIGAR=1X;DP=71;DPB=71;DPRA=0.85;EPP=29.068;EPPR=128.956;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.827586;PAO=0;PQA=0;PQR=0;PRO=0;QA=485;QR=2318;RO=58;RPL=12;RPP=29.068;RPPR=128.956;RPR=0;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:19,4:19:763:4:163:-8.13474,0,-62.0686 0/1:18:13,5:13:513:5:201:-13.0521,0,-41.0968 0/0:20:19,0:19:757:0:0:0,-5.71957,-68.0432 0/1:10:7,3:7:285:3:121:-8.2699,0,-23.0141 dDocent_Contig_8369 7 . G T 606.145 . AB=0.262712;ABP=60.7199;AC=4;AF=0.5;AN=8;AO=31;CIGAR=1X;DP=118;DPB=118;DPRA=0;EPP=70.3259;EPPR=191.928;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=0.870968;PAIREDR=0.747126;PAO=0;PQA=0;PQR=0;PRO=0;QA=1135;QR=2746;RO=87;RPL=0;RPP=70.3259;RPPR=191.928;RPR=31;RUN=1;SAF=31;SAP=70.3259;SAR=0;SRF=87;SRP=191.928;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:32:22,10:22:678:10:388:-25.6449,0,-51.6646 0/1:39:29,10:29:933:10:347:-19.8123,0,-72.5069 0/1:20:14,6:14:468:6:206:-12.8502,0,-36.4105 0/1:27:22,5:22:667:5:194:-9.70503,0,-52.1783 dDocent_Contig_8370 27 . C G 133.947 . AB=0.152542;ABP=64.8789;AC=1;AF=0.125;AN=8;AO=10;CIGAR=1X;DP=195;DPB=195;DPRA=0.725664;EPP=24.725;EPPR=404.733;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.994595;PAO=0;PQA=0;PQR=0;PRO=0;QA=401;QR=7162;RO=185;RPL=0;RPP=24.725;RPPR=404.733;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=185;SRP=404.733;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:50:50,0:50:1905:0:0:0,-15.0515,-171.66 0/0:63:63,0:63:2459:0:0:0,-18.9649,-221.463 0/1:59:50,9:50:1928:9:361:-15.0937,0,-155.965 0/0:23:22,1:22:870:1:40:0,-2.92801,-74.6134 dDocent_Contig_8371 147 . C A 68.5077 . AB=0.263158;ABP=12.2676;AC=2;AF=0.25;AN=8;AO=6;CIGAR=1X;DP=45;DPB=45;DPRA=0.820513;EPP=16.0391;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=207;QR=1317;RO=39;RPL=0;RPP=16.0391;RPPR=87.6977;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=87.6977;SRR=39;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:5:4,1:4:126:1:35:-1.99348,0,-10.1464 0/0:13:13,0:13:443:0:0:0,-3.91339,-40.1973 0/0:13:12,1:12:404:1:35:0,-0.414761,-33.1858 0/1:14:10,4:10:344:4:137:-8.45379,0,-27.0783 dDocent_Contig_8372 137 . A C 192.127 . AB=0.24;ABP=32.3686;AC=2;AF=0.25;AN=8;AO=13;CIGAR=1X;DP=79;DPB=79;DPRA=3.42857;EPP=31.2394;EPPR=146.327;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=446;QR=2215;RO=66;RPL=0;RPP=31.2394;RPPR=146.327;RPR=13;RUN=1;SAF=0;SAP=31.2394;SAR=13;SRF=0;SRP=146.327;SRR=66;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:22:21,1:21:717:1:35:0,-3.12403,-61.3491 0/0:7:7,0:7:231:0:0:0,-2.10721,-21.1129 0/1:21:15,6:15:486:6:204:-12.3722,0,-37.7272 0/1:29:23,6:23:781:6:207:-10.2384,0,-61.875 dDocent_Contig_8374 35 . C A 2224.3 . AB=0.0759494;ABP=126.399;AC=0;AF=0;AN=8;AO=6;CIGAR=1X1M1X;DP=195;DPB=195;DPRA=0;EPP=16.0391;EPPR=231.015;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.990476;PAO=0;PQA=0;PQR=0;PRO=0;QA=234;QR=4097;RO=105;RPL=0;RPP=16.0391;RPPR=231.015;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=105;SRP=231.015;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:79:40,6,30:40:1575:6,30:234,1158:-83.0507,-75.8569,-203.62,0,-110.341,-120.544 0|0:40:18,0,22:18:694:0,22:0,878:-67.2885,-72.7071,-129.687,0,-57.3709,-50.7482 0|0:44:29,0,15:29:1121:0,15:0,574:-38.7387,-47.4685,-139.539,0,-92.4546,-87.9391 0|0:32:18,0,14:18:707:0,14:0,556:-40.7503,-46.1688,-104.315,0,-58.5414,-54.327 dDocent_Contig_8375 10 . G A 325.383 . AB=0.190909;ABP=94.2911;AC=3;AF=0.375;AN=8;AO=21;CIGAR=1X;DP=153;DPB=153;DPRA=0.852713;EPP=48.6112;EPPR=285.302;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=764;QR=4798;RO=130;RPL=0;RPP=48.6112;RPPR=285.302;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=130;SRP=285.302;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:53:42,11:42:1575:11:422:-22.3758,0,-126.045 0/1:35:26,8:26:938:8:265:-13.5562,0,-74.0856 0/0:43:43,0:43:1577:0:0:0,-12.9443,-142.182 0/1:22:19,2:19:708:2:77:-0.592903,0,-57.3213 dDocent_Contig_8377 180 . G C 184.652 . AB=0.321429;ABP=10.7656;AC=4;AF=0.5;AN=8;AO=9;CIGAR=1X;DP=28;DPB=28;DPRA=0;EPP=22.5536;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=362;QR=753;RO=19;RPL=9;RPP=22.5536;RPPR=44.2683;RPR=0;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=44.2683;SRR=19;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:5:1,4:1:40:4:159:-13.1863,0,-2.49053 0/1:7:6,1:6:241:1:41:-1.98736,0,-19.9595 0/1:9:7,2:7:270:2:81:-4.97646,0,-21.9523 0/1:7:5,2:5:202:2:81:-5.57852,0,-16.4543 dDocent_Contig_8378 107 . N C 267.21 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=9;CIGAR=1X;DP=9;DPB=9;DPRA=0;EPP=22.5536;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=49.4444;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=279;QR=0;RO=0;RPL=0;RPP=22.5536;RPPR=0;RPR=9;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:105:-9.71179,-0.90309,0 1/1:4:0,4:0:0:4:124:-11.4046,-1.20412,0 1/1:1:0,1:0:0:1:33:-3.29913,-0.30103,0 1/1:1:0,1:0:0:1:17:-1.69998,-0.30103,0 dDocent_Contig_8379 24 . C T 448.274 . AB=0.252747;ABP=51.3315;AC=3;AF=0.375;AN=8;AO=23;CIGAR=1X;DP=97;DPB=97;DPRA=5.05556;EPP=52.9542;EPPR=161.528;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.956522;PAIREDR=0.917808;PAO=0;PQA=0;PQR=0;PRO=0;QA=849;QR=2847;RO=73;RPL=0;RPP=52.9542;RPPR=161.528;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=73;SRP=161.528;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:17,10:17:648:10:383:-26.6951,0,-50.5131 0/0:6:6,0:6:228:0:0:0,-1.80618,-20.8802 0/1:28:22,5:22:850:5:170:-7.37619,0,-68.5819 0/1:36:28,8:28:1121:8:296:-16.1541,0,-90.3347 dDocent_Contig_8381 188 . C T 302.396 . AB=0.5;ABP=3.0103;AC=2;AF=0.25;AN=8;AO=11;CIGAR=1X;DP=42;DPB=42;DPRA=1.1;EPP=26.8965;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=439;QR=1172;RO=31;RPL=11;RPP=26.8965;RPPR=70.3259;RPR=0;RUN=1;SAF=0;SAP=26.8965;SAR=11;SRF=0;SRP=70.3259;SRR=31;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:7:7,0:7:272:0:0:0,-2.10721,-24.8453 0/1:7:2,5:2:80:5:196:-15.905,0,-5.48436 0/1:15:9,6:9:359:6:243:-17.7325,0,-28.1542 0/0:13:13,0:13:461:0:0:0,-3.91339,-41.7991 dDocent_Contig_8382 49 . A G 1154.7 . AB=0.472222;ABP=3.73412;AC=4;AF=0.5;AN=8;AO=51;CIGAR=1X;DP=108;DPB=108;DPRA=0;EPP=113.755;EPPR=126.784;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=0.588235;PAIREDR=0.807018;PAO=0;PQA=0;PQR=0;PRO=0;QA=1712;QR=1924;RO=57;RPL=0;RPP=113.755;RPPR=126.784;RPR=51;RUN=1;SAF=51;SAP=113.755;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:34:10,24:10:331:24:797:-61.8024,0,-19.8768 0/1:22:13,9:13:441:9:311:-21.7026,0,-33.3925 0/1:28:15,13:15:509:13:433:-30.8614,0,-37.7042 0/1:24:19,5:19:643:5:171:-8.5019,0,-50.9634 dDocent_Contig_8383 34 . A G 55.8836 . AB=0.12;ABP=65.7224;AC=1;AF=0.125;AN=8;AO=13;CIGAR=1X;DP=227;DPB=227;DPRA=0;EPP=31.2394;EPPR=467.705;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=525;QR=8493;RO=214;RPL=0;RPP=31.2394;RPPR=467.705;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=214;SRP=467.705;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:73:72,1:72:2825:1:41:0,-17.8806,-250.267 0/0:22:21,1:21:845:1:41:0,-2.52809,-72.2695 0/0:82:77,5:77:3066:5:199:0,-6.39702,-257.742 0/1:50:44,6:44:1757:6:244:-7.28733,0,-143.301 dDocent_Contig_8384 7 . G A 4061.78 . AB=0.274419;ABP=288.099;AC=4;AF=0.5;AN=8;AO=177;CIGAR=1X;DP=645;DPB=645;DPRA=0;EPP=387.361;EPPR=973.658;GTI=0;LEN=1;MEANALT=2.25;MQM=59.887;MQMR=59.6868;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6681;QR=13910;RO=447;RPL=0;RPP=387.361;RPPR=973.658;RPR=177;RUN=1;SAF=177;SAP=387.361;SAR=0;SRF=447;SRP=973.658;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:201:122,76:122:3737:76:2903:-201.472,0,-276.715 0/1:214:166,39:166:5151:39:1480:-71.593,0,-401.819 0/1:113:77,32:77:2497:32:1213:-76.4781,0,-191.285 0/1:117:82,30:82:2525:30:1085:-64.0323,0,-193.4 dDocent_Contig_8385 114 . C T 72.0283 . AB=0.205882;ABP=28.557;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X3M1X;DP=75;DPB=75;DPRA=0;EPP=26.8965;EPPR=139.813;GTI=0;LEN=1;MEANALT=1.33333;MQM=36.0909;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=373;QR=2161;RO=63;RPL=0;RPP=26.8965;RPPR=139.813;RPR=11;RUN=1;SAF=0;SAP=26.8965;SAR=11;SRF=0;SRP=139.813;SRR=63;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:41:37,4:37:1268:4:138:0,-1.41219,-103.491 0|1:13:9,4:9:311:4:137:-8.19277,0,-24.4118 0|1:21:17,3:17:582:3:98:-2.48823,0,-46.3386 .:.:.:.:.:.:.:. dDocent_Contig_8386 57 . T C 172.924 . AB=0.178571;ABP=53.2644;AC=2;AF=0.25;AN=8;AO=10;CIGAR=1X;DP=88;DPB=88;DPRA=1.75;EPP=24.725;EPPR=172.385;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.948718;PAO=0;PQA=0;PQR=0;PRO=0;QA=391;QR=3121;RO=78;RPL=10;RPP=24.725;RPPR=172.385;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=78;SRP=172.385;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:33:25,8:25:1012:8:314:-18.6877,0,-81.4366 0/1:23:21,2:21:835:2:77:-0.38451,0,-68.5397 0/0:24:24,0:24:949:0:0:0,-7.22472,-85.7047 0/0:8:8,0:8:325:0:0:0,-2.40824,-29.6191 dDocent_Contig_8387 17 . G A 32.2722 . AB=0.136364;ABP=28.2783;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=40;DPB=40;DPRA=2.44444;EPP=9.52472;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.837838;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=1452;RO=37;RPL=0;RPP=9.52472;RPPR=83.3548;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 0/1:22:19,3:19:741:3:122:-4.74983,0,-60.3896 0/0:8:8,0:8:327:0:0:0,-2.40824,-29.8001 0/0:10:10,0:10:384:0:0:0,-3.0103,-34.9134 dDocent_Contig_8389 27 . G C 703.72 . AB=0.298969;ABP=37.0599;AC=4;AF=0.5;AN=8;AO=29;CIGAR=1X;DP=97;DPB=97;DPRA=0;EPP=65.983;EPPR=150.67;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1172;QR=2719;RO=68;RPL=0;RPP=65.983;RPPR=150.67;RPR=29;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=68;SRP=150.67;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:26,4:26:1036:4:164:-6.119,0,-84.502 0/1:12:3,9:3:123:9:367:-29.7829,0,-7.85243 0/1:31:24,7:24:964:7:280:-16.2391,0,-77.7267 0/1:24:15,9:15:596:9:361:-25.629,0,-46.7524 dDocent_Contig_8390 8 . C T 1321.45 . AB=0.404255;ABP=6.75262;AC=5;AF=0.625;AN=8;AO=46;CIGAR=1X1M1X;DP=74;DPB=74;DPRA=0;EPP=102.898;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1670;QR=1020;RO=28;RPL=0;RPP=102.898;RPPR=63.8115;RPR=46;RUN=1;SAF=46;SAP=102.898;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:27:0,27:0:0:27:954:-86.1607,-8.12781,0 0|1:16:12,4:12:445:4:153:-9.32513,0,-35.5776 0|1:18:8,10:8:297:10:371:-28.3206,0,-21.6652 0|1:13:8,5:8:278:5:192:-13.7368,0,-21.4374 dDocent_Contig_8392 75 . T A 1560.71 . AB=0.503759;ABP=3.02663;AC=4;AF=0.5;AN=8;AO=67;CIGAR=1X;DP=133;DPB=133;DPRA=0;EPP=148.499;EPPR=146.327;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.865672;PAIREDR=0.712121;PAO=0;PQA=0;PQR=0;PRO=0;QA=2247;QR=2221;RO=66;RPL=67;RPP=148.499;RPPR=146.327;RPR=0;RUN=1;SAF=67;SAP=148.499;SAR=0;SRF=66;SRP=146.327;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:41:12,29:12:382:29:987:-76.7981,0,-22.3452 0/1:42:27,15:27:935:15:488:-31.5895,0,-71.8219 0/1:29:14,15:14:484:15:496:-36.227,0,-35.1598 0/1:21:13,8:13:420:8:276:-18.8543,0,-31.7898 dDocent_Contig_8393 7 . G A 173.185 . AB=0.157895;ABP=80.269;AC=1;AF=0.125;AN=8;AO=12;CIGAR=1X;DP=147;DPB=147;DPRA=3.21127;EPP=29.068;EPPR=287.473;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=455;QR=4270;RO=131;RPL=0;RPP=29.068;RPPR=287.473;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=131;SRP=287.473;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:76:62,12:62:2062:12:455:-18.7164,0,-163.245 0/0:25:24,0:24:786:0:0:0,-7.22472,-70.7181 0/0:20:20,0:20:606:0:0:0,-6.0206,-54.8189 0/0:26:25,0:25:816:0:0:0,-7.52575,-73.4141 dDocent_Contig_8394 107 . N A 1449.51 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=49;CIGAR=1X;DP=49;DPB=49;DPRA=0;EPP=109.412;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1590;QR=0;RO=0;RPL=0;RPP=109.412;RPPR=0;RPR=49;RUN=1;SAF=0;SAP=109.412;SAR=49;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:15:0,15:0:0:15:510:-46.2249,-4.51545,0 1/1:9:0,9:0:0:9:297:-27.0525,-2.70927,0 1/1:9:0,9:0:0:9:267:-24.3207,-2.70927,0 1/1:16:0,16:0:0:16:516:-46.7506,-4.81648,0 dDocent_Contig_8396 38 . A C 220.589 . AB=0.357143;ABP=7.97367;AC=3;AF=0.375;AN=8;AO=10;CIGAR=1X;DP=35;DPB=35;DPRA=1.33333;EPP=3.0103;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=386;QR=1004;RO=25;RPL=10;RPP=24.725;RPPR=57.2971;RPR=0;RUN=1;SAF=5;SAP=3.0103;SAR=5;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:7:7,0:7:282:0:0:0,-2.10721,-25.7526 0/1:10:8,2:8:319:2:82:-4.76938,0,-26.0666 0/1:3:1,2:1:41:2:78:-6.50021,0,-3.19148 0/1:15:9,6:9:362:6:226:-16.1802,0,-28.4282 dDocent_Contig_8397 28 . T C 352.293 . AB=0.464286;ABP=3.32051;AC=2;AF=0.25;AN=8;AO=14;CIGAR=1X;DP=53;DPB=53;DPRA=1.27273;EPP=33.4109;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=553;QR=1546;RO=39;RPL=0;RPP=33.4109;RPPR=87.6977;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:14:13,1:13:518:1:39:0,-0.317855,-43.0705 0/0:11:11,0:11:426:0:0:0,-3.31133,-38.6871 0/1:22:14,8:14:561:8:316:-22.183,0,-44.2101 0/1:6:1,5:1:41:5:198:-16.3912,0,-2.28839 dDocent_Contig_8398 49 . T C 410.395 . AB=0.138462;ABP=298.197;AC=2;AF=0.25;AN=8;AO=40;CIGAR=1X;DP=453;DPB=453;DPRA=1.11859;EPP=89.8692;EPPR=888.992;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1466;QR=15499;RO=412;RPL=0;RPP=89.8692;RPPR=888.992;RPR=40;RUN=1;SAF=40;SAP=89.8692;SAR=0;SRF=412;SRP=897.657;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:128:117,11:117:4448:11:426:-0.162868,0,-361.813 0/1:132:107,25:107:4020:25:913:-42.7369,0,-322.128 0/0:89:84,4:84:3130:4:127:0,-15.1314,-270.08 0/0:104:104,0:104:3901:0:0:0,-31.3071,-351.168 dDocent_Contig_8399 27 . C T 324.295 . AB=0.206186;ABP=75.7434;AC=3;AF=0.375;AN=8;AO=20;CIGAR=1X;DP=121;DPB=121;DPRA=1.34722;EPP=46.4397;EPPR=222.329;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.990099;PAO=0;PQA=0;PQR=0;PRO=0;QA=733;QR=4037;RO=101;RPL=0;RPP=46.4397;RPPR=222.329;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=101;SRP=222.329;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:26,4:26:1027:4:148:-4.64994,0,-83.6898 0/0:24:24,0:24:963:0:0:0,-7.22472,-86.9704 0/1:29:21,8:21:849:8:296:-18.2632,0,-67.9923 0/1:38:30,8:30:1198:8:289:-14.9141,0,-96.6556 dDocent_Contig_8400 27 . T C 324.887 . AB=0.428571;ABP=4.25114;AC=2;AF=0.25;AN=8;AO=12;CIGAR=1X;DP=59;DPB=59;DPRA=0.903226;EPP=29.068;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=484;QR=1856;RO=47;RPL=0;RPP=29.068;RPPR=105.07;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:17:17,0:17:667:0:0:0,-5.11751,-60.3579 0/1:13:5,8:5:191:8:322:-25.4351,0,-13.6431 0/0:14:14,0:14:566:0:0:0,-4.21442,-51.2826 0/1:15:11,4:11:432:4:162:-10.4515,0,-34.7164 dDocent_Contig_8401 36 . G A 857.128 . AB=0.707317;ABP=18.3165;AC=1;AF=0.125;AN=8;AO=29;CIGAR=1X;DP=154;DPB=154;DPRA=1.0885;EPP=65.983;EPPR=274.444;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1102;QR=4948;RO=125;RPL=0;RPP=65.983;RPPR=274.444;RPR=29;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=125;SRP=274.444;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:41:12,29:12:480:29:1102:-87.1108,0,-31.2073 0/0:33:33,0:33:1297:0:0:0,-9.93399,-116.996 0/0:50:50,0:50:1975:0:0:0,-15.0515,-177.947 0/0:30:30,0:30:1196:0:0:0,-9.0309,-107.918 dDocent_Contig_8402 21 . A C 451.054 . AB=0.316667;ABP=20.5268;AC=4;AF=0.5;AN=8;AO=19;CIGAR=1X2M1X;DP=60;DPB=60;DPRA=0;EPP=44.2683;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=767;QR=1626;RO=41;RPL=0;RPP=44.2683;RPPR=92.0407;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:26:19,7:19:750:7:280:-17.7454,0,-59.9973 0|1:4:2,2:2:81:2:82:-6.57556,0,-6.48161 0|1:15:11,4:11:441:4:160:-10.2684,0,-35.53 0|1:15:9,6:9:354:6:245:-17.914,0,-27.7044 dDocent_Contig_8403 72 . G A 879.203 . AB=0.414894;ABP=8.9241;AC=4;AF=0.5;AN=8;AO=39;CIGAR=1X;DP=94;DPB=94;DPRA=0;EPP=87.6977;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=0.666667;PAIREDR=0.727273;PAO=0;PQA=0;PQR=0;PRO=0;QA=1359;QR=1997;RO=55;RPL=39;RPP=87.6977;RPPR=122.441;RPR=0;RUN=1;SAF=39;SAP=87.6977;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:13,7:13:478:7:221:-14.1748,0,-37.3401 0/1:39:23,16:23:832:16:568:-39.7113,0,-63.453 0/1:10:8,2:8:286:2:66:-3.25801,0,-23.0709 0/1:25:11,14:11:401:14:504:-38.1682,0,-28.9068 dDocent_Contig_8404 48 . C A 76.2575 . AB=0.25;ABP=11.6962;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=73;DPB=73;DPRA=0.842105;EPP=11.6962;EPPR=152.842;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=153;QR=2667;RO=69;RPL=0;RPP=11.6962;RPPR=152.842;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=69;SRP=152.842;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:29:29,0:29:1124:0:0:0,-8.72987,-101.451 0/0:13:13,0:13:502:0:0:0,-3.91339,-45.525 0/1:16:12,4:12:460:4:153:-9.32472,0,-36.9294 0/0:15:15,0:15:581:0:0:0,-4.51545,-52.6231 dDocent_Contig_8405 18 . T C 134.1 . AB=0.186047;ABP=39.8243;AC=2;AF=0.25;AN=8;AO=11;CIGAR=1X;DP=162;DPB=162;DPRA=0.52381;EPP=26.8965;EPPR=330.903;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=443;QR=5962;RO=151;RPL=0;RPP=26.8965;RPPR=330.903;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=151;SRP=330.903;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:63:63,0:63:2525:0:0:0,-18.9649,-227.384 0/0:56:53,3:53:2060:3:121:0,-5.57769,-174.299 0/1:14:11,3:11:420:3:123:-7.25037,0,-33.9248 0/1:29:24,5:24:957:5:199:-9.55757,0,-77.6982 dDocent_Contig_8406 22 . T G 114.852 . AB=0.166667;ABP=49.335;AC=2;AF=0.25;AN=8;AO=11;CIGAR=1X2M1X;DP=99;DPB=99;DPRA=0;EPP=4.78696;EPPR=119.143;GTI=0;LEN=1;MEANALT=1.5;MQM=21.6364;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0.860759;PAO=0;PQA=0;PQR=0;PRO=0;QA=408;QR=3068;RO=79;RPL=0;RPP=26.8965;RPPR=174.557;RPR=11;RUN=1;SAF=7;SAP=4.78696;SAR=4;SRF=72;SRP=119.143;SRR=7;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:23:19,0,4:19:736:0,4:0,152:-1.53335,-7.25292,-67.8438,0,-60.847,-59.6429 0|0:36:31,3,2:31:1199:3,2:119,77:0,-0.51447,-98.2211,-5.69028,-95.4439,-103.585 0|0:15:14,0,1:14:550:0,1:0,40:0,-4.21442,-49.6123,-2.32224,-47.9509,-47.6499 0|1:25:15,6,4:15:583:6,4:240,139:-13.1483,0,-46.2553,-12.1365,-42.5084,-58.8576 dDocent_Contig_8408 42 . G A 364.116 . AB=0.263158;ABP=30.7823;AC=1;AF=0.125;AN=8;AO=15;CIGAR=1X;DP=175;DPB=175;DPRA=1.44915;EPP=35.5824;EPPR=350.446;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=607;QR=6413;RO=160;RPL=0;RPP=35.5824;RPPR=350.446;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=160;SRP=350.446;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:57:42,15:42:1676:15:607:-37.8095,0,-133.908 0/0:26:26,0:26:1042:0:0:0,-7.82678,-94.0684 0/0:63:63,0:63:2531:0:0:0,-18.9649,-227.92 0/0:29:29,0:29:1164:0:0:0,-8.72987,-105.04 dDocent_Contig_8409 37 . T C 706.919 . AB=0.367089;ABP=15.1321;AC=4;AF=0.5;AN=8;AO=29;CIGAR=1X;DP=79;DPB=79;DPRA=0;EPP=9.07545;EPPR=5.78978;GTI=0;LEN=1;MEANALT=1;MQM=59.5862;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.724138;PAIREDR=0.8;PAO=0;PQA=0;PQR=0;PRO=0;QA=1107;QR=1917;RO=50;RPL=0;RPP=65.983;RPPR=111.584;RPR=29;RUN=1;SAF=19;SAP=9.07545;SAR=10;SRF=29;SRP=5.78978;SRR=21;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:13,6:13:500:6:233:-15.6173,0,-39.6235 0/1:20:18,2:18:696:2:76:-1.19294,0,-56.9462 0/1:18:9,9:9:342:9:357:-27.0566,0,-25.7118 0/1:22:10,12:10:379:12:441:-33.3993,0,-27.8352 dDocent_Contig_8410 29 . A G 367.958 . AB=0.319149;ABP=16.3625;AC=2;AF=0.25;AN=8;AO=15;CIGAR=1X;DP=93;DPB=93;DPRA=1.02174;EPP=35.5824;EPPR=172.385;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=596;QR=3110;RO=78;RPL=0;RPP=35.5824;RPPR=172.385;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=78;SRP=172.385;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:10,3:10:390:3:108:-6.1573,0,-31.5414 0/0:22:22,0:22:891:0:0:0,-6.62266,-80.4967 0/1:34:22,12:22:884:12:488:-34.0365,0,-69.6321 0/0:24:24,0:24:945:0:0:0,-7.22472,-85.3462 dDocent_Contig_8411 107 . N G 87.7145 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=94;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:94:-8.77091,-0.90309,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_8412 7 . G C 1488.98 . AB=0.423913;ABP=7.63648;AC=5;AF=0.625;AN=8;AO=39;CIGAR=1X5M;DP=92;DPB=88.5;DPRA=0;EPP=87.6977;EPPR=72.4974;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1512;QR=1168;RO=32;RPL=0;RPP=87.6977;RPPR=72.4974;RPR=39;RUN=1;SAF=39;SAP=87.6977;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:20:0,13,7:0:0:13,7:503,272:-64.0576,-22.74,-18.8266,-41.7053,0,-39.5981 0|1:29:8,4,17:8:289:4,17:156,658:-51.6424,-41.2265,-63.5989,0,-10.7326,-18.4481 0|1:23:9,2,12:9:336:2,12:78,465:-35.491,-31.7882,-58.6857,0,-21.0773,-23.8797 0|1:20:15,2,3:15:543:2,3:77,117:-5.10516,-3.30021,-47.0006,0,-37.9803,-43.4023 dDocent_Contig_8413 150 . G C 32.3232 . AB=0.1875;ABP=16.582;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=100;DPB=100;DPRA=0.923077;EPP=16.0391;EPPR=204.957;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=200;QR=3175;RO=93;RPL=0;RPP=16.0391;RPPR=204.957;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=204.957;SRR=93;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:42:42,0:42:1408:0:0:0,-12.6433,-127.013 0/0:32:29,3:29:1009:3:95:0,-0.768979,-82.2594 0/1:16:12,3:12:414:3:105:-4.93085,0,-32.7265 0/0:10:10,0:10:344:0:0:0,-3.0103,-31.2928 dDocent_Contig_8414 8 . C T 1208 . AB=0.524272;ABP=3.53736;AC=3;AF=0.375;AN=8;AO=55;CIGAR=1X;DP=129;DPB=129;DPRA=0;EPP=122.441;EPPR=163.699;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=0;PAIREDR=0.72973;PAO=0;PQA=0;PQR=0;PRO=0;QA=1774;QR=2474;RO=74;RPL=0;RPP=122.441;RPPR=163.699;RPR=55;RUN=1;SAF=55;SAP=122.441;SAR=0;SRF=74;SRP=163.699;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:47:22,25:22:763:25:859:-63.4635,0,-54.8245 0/1:42:19,23:19:631:23:693:-49.9995,0,-44.4457 0/1:14:8,6:8:290:6:185:-12.7349,0,-22.2326 0/0:26:25,1:25:790:1:37:0,-4.12895,-67.6811 dDocent_Contig_8415 46 . C G 1224.4 . AB=0.324503;ABP=43.4054;AC=3;AF=0.5;AN=6;AO=49;CIGAR=1X;DP=151;DPB=151;DPRA=0;EPP=84.9501;EPPR=222.329;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.285714;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1917;QR=3975;RO=101;RPL=3;RPP=84.9501;RPPR=222.329;RPR=46;RUN=1;SAF=49;SAP=109.412;SAR=0;SRF=101;SRP=222.329;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 0/1:49:33,16:33:1308:16:614:-40.8356,0,-103.231 0/1:33:8,25:8:303:25:981:-78.6576,0,-17.6902 0/1:69:60,8:60:2364:8:322:-8.47005,0,-192.047 dDocent_Contig_8416 9 . A G 617.681 . AB=0.315789;ABP=31.0109;AC=4;AF=0.5;AN=8;AO=30;CIGAR=1X;DP=95;DPB=95;DPRA=0;EPP=68.1545;EPPR=144.156;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1071;QR=2281;RO=65;RPL=0;RPP=68.1545;RPPR=144.156;RPR=30;RUN=1;SAF=30;SAP=68.1545;SAR=0;SRF=65;SRP=144.156;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:12,7:12:457:7:256:-17.6708,0,-35.7598 0/1:42:32,10:32:1089:10:347:-18.9139,0,-85.6462 0/1:12:7,5:7:239:5:182:-13.1218,0,-18.224 0/1:22:14,8:14:496:8:286:-19.4596,0,-38.3465 dDocent_Contig_8418 38 . C A 810.623 . AB=0.333333;ABP=27.6203;AC=4;AF=0.5;AN=8;AO=34;CIGAR=1X;DP=102;DPB=102;DPRA=0;EPP=76.8404;EPPR=150.67;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1304;QR=2691;RO=68;RPL=0;RPP=76.8404;RPPR=150.67;RPR=34;RUN=1;SAF=34;SAP=76.8404;SAR=0;SRF=68;SRP=150.67;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:48:36,12:36:1422:12:471:-28.2917,0,-113.789 0/1:30:22,8:22:883:8:312:-19.4122,0,-70.7481 0/1:16:3,13:3:107:13:480:-38.7065,0,-5.15992 0/1:8:7,1:7:279:1:41:-1.68633,0,-23.0713 dDocent_Contig_8419 18 . A G 541.227 . AB=0.257732;ABP=52.4617;AC=4;AF=0.5;AN=8;AO=25;CIGAR=1X;DP=97;DPB=97;DPRA=0;EPP=57.2971;EPPR=159.356;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.76;PAIREDR=0.986111;PAO=0;PQA=0;PQR=0;PRO=0;QA=971;QR=2811;RO=72;RPL=0;RPP=57.2971;RPPR=159.356;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=72;SRP=159.356;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:39:24,15:24:941:15:580:-40.8004,0,-73.2592 0/1:25:23,2:23:894:2:81:-0.159984,0,-73.2481 0/1:13:11,2:11:434:2:77:-3.39544,0,-35.5022 0/1:20:14,6:14:542:6:233:-15.3189,0,-43.101 dDocent_Contig_8420 51 . G A 4150.96 . AB=0.696429;ABP=59.3135;AC=5;AF=0.625;AN=8;AO=135;CIGAR=1X3M2X;DP=187;DPB=187;DPRA=0;EPP=296.159;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5265;QR=2013;RO=52;RPL=135;RPP=296.159;RPPR=115.927;RPR=0;RUN=1;SAF=135;SAP=296.159;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:19:1,18:1:39:18:712:-60.5144,-1.82301,0 0|1:92:25,67:25:971:67:2602:-206.65,0,-60.0058 0|1:41:15,26:15:574:26:1015:-79.3143,0,-39.6584 0|1:35:11,24:11:429:24:936:-74.0152,0,-28.4288 dDocent_Contig_8421 142 . C T 445.068 . AB=0.234694;ABP=62.9252;AC=3;AF=0.375;AN=8;AO=23;CIGAR=1X;DP=123;DPB=123;DPRA=1.30667;EPP=52.9542;EPPR=220.158;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=870;QR=3727;RO=100;RPL=0;RPP=52.9542;RPPR=220.158;RPR=23;RUN=1;SAF=0;SAP=52.9542;SAR=23;SRF=0;SRP=220.158;SRR=100;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:56:43,13:43:1627:13:489:-27.4979,0,-129.837 0/1:15:8,7:8:312:7:265:-19.6953,0,-23.9295 0/0:25:25,0:25:921:0:0:0,-7.52575,-83.1933 0/1:27:24,3:24:867:3:116:-2.68989,0,-70.2081 dDocent_Contig_8422 32 . G T 943.494 . AB=0.0684932;ABP=121.073;AC=0;AF=0;AN=8;AO=5;CIGAR=1M1D22M1X2M;DP=220;DPB=216.37;DPRA=0;EPP=13.8677;EPPR=222.329;GTI=0;LEN=1;MEANALT=7;MQM=60;MQMR=60;NS=4;NUMALT=5;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=175;QR=3846;RO=101;RPL=0;RPP=13.8677;RPPR=222.329;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=101;SRP=222.329;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:73:19,16,5,5,18,8:19:711:16,5,5,18,8:482,175,144,595,280:-42.3859,-9.56542,-62.9902,-33.8652,-53.5689,-90.6012,-36.6568,-56.3601,-80.6581,-93.391,0,-19.7126,-44.0079,-46.7993,-52.828,-25.3213,-45.0267,-69.3254,-72.1158,-35.4651,-81.1557 0|0:82:46,15,0,0,10,0:46:1776:15,0,0,10,0:442,0,0,323,0:-21.3947,0,-141.385,-35.242,-145.901,-181.139,-35.242,-145.901,-181.139,-181.139,-9.19119,-119.863,-155.098,-155.098,-152.088,-35.242,-145.901,-181.139,-181.139,-155.098,-181.139 0|0:50:32,1,0,0,12,5:32:1209:1,0,0,12,5:37,0,0,349,183:-18.1005,-24.7032,-123.534,-27.7334,-123.835,-126.863,-27.7334,-123.835,-126.863,-126.863,0,-96.0724,-99.0992,-99.0992,-95.4869,-12.7591,-108.879,-111.906,-111.906,-84.1456,-110.401 0|0:15:4,2,0,0,8,0:4:150:2,0,0,8,0:60,0,0,261,0:-19.8663,-16.2795,-27.9769,-21.0705,-28.5789,-33.3696,-21.0705,-28.5789,-33.3696,-33.3696,0,-7.53991,-12.3154,-12.3154,-9.90716,-21.0705,-28.5789,-33.3696,-33.3696,-12.3154,-33.3696 dDocent_Contig_8424 81 . T G 303.968 . AB=0.565217;ABP=3.86001;AC=1;AF=0.125;AN=8;AO=13;CIGAR=1X;DP=65;DPB=65;DPRA=1.64286;EPP=31.2394;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=430;QR=1775;RO=52;RPL=13;RPP=31.2394;RPPR=115.927;RPR=0;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:26:26,0:26:886:0:0:0,-7.82678,-80.0532 0/1:23:10,13:10:337:13:430:-32.0957,0,-23.7327 0/0:13:13,0:13:451:0:0:0,-3.91339,-40.9216 0/0:3:3,0:3:101:0:0:0,-0.90309,-9.4236 dDocent_Contig_8425 22 . C T 1293.55 . AB=0.406593;ABP=9.90651;AC=5;AF=0.625;AN=8;AO=45;CIGAR=1X;DP=99;DPB=99;DPRA=0;EPP=100.727;EPPR=120.27;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=0.888889;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1786;QR=2122;RO=54;RPL=0;RPP=100.727;RPPR=120.27;RPR=45;RUN=1;SAF=45;SAP=100.727;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:34:26,8:26:1001:8:316:-18.5699,0,-80.1451 0/1:30:21,9:21:847:9:349:-22.7368,0,-67.5105 0/1:27:7,20:7:274:20:805:-64.6405,0,-16.8981 1/1:8:0,8:0:0:8:316:-28.8059,-2.40824,0 dDocent_Contig_8426 42 . A T 378.563 . AB=0.22619;ABP=57.7107;AC=3;AF=0.375;AN=8;AO=19;CIGAR=1X;DP=97;DPB=97;DPRA=2.15385;EPP=44.2683;EPPR=172.385;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=749;QR=3118;RO=78;RPL=0;RPP=44.2683;RPPR=172.385;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=78;SRP=172.385;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:47:40,7:40:1609:7:283:-11.6952,0,-130.893 0/1:35:24,11:24:952:11:425:-28.0596,0,-75.4456 0/0:13:13,0:13:516:0:0:0,-3.91339,-46.7862 0/1:2:1,1:1:41:1:41:-3.49251,0,-3.49251 dDocent_Contig_8427 29 . T C 2033.55 . AB=0.514925;ABP=3.26958;AC=4;AF=0.5;AN=8;AO=69;CIGAR=1X;DP=134;DPB=134;DPRA=0;EPP=152.842;EPPR=144.156;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2765;QR=2584;RO=65;RPL=0;RPP=152.842;RPPR=144.156;RPR=69;RUN=1;SAF=69;SAP=152.842;SAR=0;SRF=65;SRP=144.156;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:62:39,23:39:1572:23:915:-63.9919,0,-123.05 0/1:56:13,43:13:522:43:1730:-139.057,0,-30.4675 0/1:10:9,1:9:326:1:41:-1.08427,0,-26.6613 0/1:6:4,2:4:164:2:79:-5.69106,0,-13.3437 dDocent_Contig_8429 116 . A G 55.9418 . AB=0.2;ABP=18.6449;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=90;DPB=90;DPRA=1.19512;EPP=13.8677;EPPR=187.585;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=180;QR=3063;RO=85;RPL=0;RPP=13.8677;RPPR=187.585;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=187.585;SRR=85;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:38:38,0:38:1358:0:0:0,-11.4391,-122.52 0/0:29:28,1:28:1019:1:36:0,-5.13159,-88.4275 0/1:20:16,4:16:577:4:144:-7.29302,0,-46.243 0/0:3:3,0:3:109:0:0:0,-0.90309,-10.1681 dDocent_Contig_8433 40 . C T 276.712 . AB=0.205882;ABP=54.1038;AC=1;AF=0.125;AN=8;AO=20;CIGAR=1X;DP=171;DPB=171;DPRA=2.66667;EPP=46.4397;EPPR=328.731;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=752;QR=5767;RO=150;RPL=0;RPP=46.4397;RPPR=328.731;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=150;SRP=328.731;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:54:49,4:49:1898:4:122:0,-4.80436,-159.798 0/1:68:54,14:54:2060:14:550:-29.3701,0,-165.119 0/0:30:28,2:28:1064:2:80:0,-1.43911,-88.4497 0/0:19:19,0:19:745:0:0:0,-5.71957,-67.3709 dDocent_Contig_8434 54 . C T 234.001 . AB=0.209677;ABP=48.4011;AC=2;AF=0.25;AN=8;AO=13;CIGAR=1X;DP=155;DPB=155;DPRA=0.666667;EPP=31.2394;EPPR=307.016;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.978571;PAO=0;PQA=0;PQR=0;PRO=0;QA=495;QR=5460;RO=140;RPL=13;RPP=31.2394;RPPR=307.016;RPR=0;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=140;SRP=307.016;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:48:47,0:47:1878:0:0:0,-14.1484,-168.818 0/1:15:8,7:8:299:7:263:-19.5117,0,-22.7397 0/1:47:40,6:40:1566:6:232:-7.28633,0,-127.248 0/0:45:45,0:45:1717:0:0:0,-13.5463,-154.736 dDocent_Contig_8435 58 . A T 2273.72 . AB=0.415;ABP=15.5614;AC=4;AF=0.5;AN=8;AO=83;CIGAR=1X;DP=200;DPB=200;DPRA=0;EPP=183.243;EPPR=254.901;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3265;QR=4472;RO=116;RPL=83;RPP=183.243;RPPR=254.901;RPR=0;RUN=1;SAF=83;SAP=183.243;SAR=0;SRF=116;SRP=254.901;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:89:52,36:52:1975:36:1448:-103.669,0,-151.045 0/1:72:46,26:46:1801:26:1021:-70.5098,0,-140.637 0/1:21:15,6:15:584:6:230:-14.7394,0,-46.5754 0/1:18:3,15:3:112:15:566:-45.8516,0,-5.02719 dDocent_Contig_8436 12 . C G 133.512 . AB=0.26087;ABP=14.4341;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X;DP=145;DPB=145;DPRA=0.705882;EPP=14.8328;EPPR=189.246;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.555556;PAIREDR=0.911765;PAO=0;PQA=0;PQR=0;PRO=0;QA=344;QR=5312;RO=136;RPL=0;RPP=22.5536;RPPR=298.331;RPR=9;RUN=1;SAF=8;SAP=14.8328;SAR=1;SRF=122;SRP=189.246;SRR=14;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:37:34,3:34:1295:3:104:0,-1.43833,-107.121 0/1:23:17,6:17:663:6:240:-15.0502,0,-53.0754 0/0:61:61,0:61:2428:0:0:0,-18.3628,-218.672 0/0:24:24,0:24:926:0:0:0,-7.22472,-83.6446 dDocent_Contig_8437 15 . C T 61.2113 . AB=0.15625;ABP=35.8538;AC=2;AF=0.25;AN=8;AO=5;CIGAR=1X;DP=44;DPB=44;DPRA=2.66667;EPP=13.8677;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=204;QR=1564;RO=39;RPL=0;RPP=13.8677;RPPR=87.6977;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:17,3:17:683:3:123:-5.44419,0,-55.7793 0/0:11:11,0:11:434:0:0:0,-3.31133,-39.412 0/1:12:10,2:10:406:2:81:-4.07337,0,-33.288 0/0:1:1,0:1:41:0:0:0,-0.30103,-4.09457 dDocent_Contig_8438 41 . A G 1155.32 . AB=0.390909;ABP=14.3809;AC=4;AF=0.5;AN=8;AO=43;CIGAR=1X;DP=110;DPB=110;DPRA=0;EPP=96.3836;EPPR=148.499;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1718;QR=2620;RO=67;RPL=0;RPP=96.3836;RPPR=148.499;RPR=43;RUN=1;SAF=43;SAP=96.3836;SAR=0;SRF=67;SRP=148.499;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:39:20,19:20:774:19:751:-56.1714,0,-58.2403 0/1:28:20,8:20:792:8:321:-20.8267,0,-63.1707 0/1:18:13,5:13:513:5:201:-13.052,0,-41.0996 0/1:25:14,11:14:541:11:445:-32.8797,0,-41.5034 dDocent_Contig_8441 107 . N G 2166.46 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=69;CIGAR=1X;DP=69;DPB=69;DPRA=0;EPP=152.842;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=2386;QR=0;RO=0;RPL=0;RPP=152.842;RPPR=0;RPR=69;RUN=1;SAF=0;SAP=152.842;SAR=69;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:11:0,11:0:0:11:380:-34.5329,-3.31133,0 1/1:31:0,31:0:0:31:1081:-97.6013,-9.33193,0 1/1:22:0,22:0:0:22:751:-67.9075,-6.62266,0 1/1:5:0,5:0:0:5:174:-16.002,-1.50515,0 dDocent_Contig_8442 7 . G A 1091.28 . AB=0.380531;ABP=17.0192;AC=4;AF=0.5;AN=8;AO=43;CIGAR=1X;DP=113;DPB=113;DPRA=0;EPP=96.3836;EPPR=150.67;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1653;QR=2116;RO=68;RPL=0;RPP=96.3836;RPPR=150.67;RPR=43;RUN=1;SAF=43;SAP=96.3836;SAR=0;SRF=68;SRP=150.67;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:48:36,10:36:1120:10:387:-21.0924,0,-86.993 0/1:37:16,21:16:489:21:809:-61.9973,0,-33.1591 0/1:22:13,9:13:395:9:340:-24.3324,0,-29.2155 0/1:6:3,3:3:112:3:117:-9.1042,0,-8.64012 dDocent_Contig_8443 161 . G A 434.128 . AB=0.259259;ABP=43.7857;AC=3;AF=0.375;AN=8;AO=21;CIGAR=1X;DP=86;DPB=86;DPRA=5.4;EPP=48.6112;EPPR=144.156;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=794;QR=2517;RO=65;RPL=21;RPP=48.6112;RPPR=144.156;RPR=0;RUN=1;SAF=0;SAP=48.6112;SAR=21;SRF=0;SRP=144.156;SRR=65;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:14,11:14:561:11:388:-27.7187,0,-43.3075 0/1:47:38,9:38:1449:9:365:-19.0664,0,-116.495 0/0:5:5,0:5:186:0:0:0,-1.50515,-17.0958 0/1:9:8,1:8:321:1:41:-1.3853,0,-26.5483 dDocent_Contig_8444 35 . A G 155.224 . 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AB=0.266667;ABP=10.1038;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=43;DPB=43;DPRA=1.60714;EPP=11.6962;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.974359;PAO=0;PQA=0;PQR=0;PRO=0;QA=159;QR=1477;RO=39;RPL=4;RPP=11.6962;RPPR=87.6977;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:11,4:11:430:4:159:-10.176,0,-34.5391 0/0:15:15,0:15:555:0:0:0,-4.51545,-50.276 0/0:8:8,0:8:298:0:0:0,-2.40824,-27.1703 0/0:5:5,0:5:194:0:0:0,-1.50515,-17.8327 dDocent_Contig_8446 57 . G A 81.1488 . 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AB=0.520408;ABP=3.36483;AC=4;AF=0.5;AN=8;AO=51;CIGAR=1X;DP=98;DPB=98;DPRA=0;EPP=113.755;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=58.902;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.960784;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1961;QR=1558;RO=47;RPL=0;RPP=113.755;RPPR=105.07;RPR=51;RUN=1;SAF=51;SAP=113.755;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:14,12:14:482:12:456:-33.5599,0,-35.8698 0/1:46:19,27:19:633:27:1043:-80.0818,0,-43.4238 0/1:11:2,9:2:71:9:349:-28.4594,0,-3.42975 0/1:15:12,3:12:372:3:113:-6.02352,0,-29.2572 dDocent_Contig_8448 130 . G C 1227.15 . 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AB=0.236842;ABP=25.8679;AC=1;AF=0.125;AN=8;AO=13;CIGAR=1X;DP=146;DPB=146;DPRA=4.09091;EPP=31.2394;EPPR=291.816;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=450;QR=4547;RO=133;RPL=13;RPP=31.2394;RPPR=291.816;RPR=0;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=133;SRP=291.816;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:38:29,9:29:1002:9:310:-16.7951,0,-79.0532 0/0:58:55,3:55:1867:3:105:0,-7.66358,-158.515 0/0:39:38,1:38:1305:1:35:0,-8.24154,-114.252 0/0:11:11,0:11:373:0:0:0,-3.31133,-33.8968 dDocent_Contig_8450 67 . G C 120.164 . 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G A 46.2949 . AB=0.128205;ABP=49.8362;AC=1;AF=0.125;AN=8;AO=12;CIGAR=1X;DP=278;DPB=278;DPRA=0;EPP=29.068;EPPR=569.765;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=0.984674;PAO=0;PQA=0;PQR=0;PRO=0;QA=467;QR=8378;RO=261;RPL=0;RPP=29.068;RPPR=569.765;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=261;SRP=569.765;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:59:53,4:53:1739:4:155:0,-3.03566,-142.51 0/0:84:81,2:81:2544:2:78:0,-17.7852,-221.851 0/0:96:94,1:94:3065:1:39:0,-24.9811,-272.236 0/1:39:33,5:33:1030:5:195:-6.32845,0,-81.4152 dDocent_Contig_8454 13 . G C 960.777 . AB=0.0666667;ABP=174.267;AC=0;AF=0;AN=8;AO=7;CIGAR=1X2M1X2M4X;DP=134;DPB=134;DPRA=0;EPP=18.2106;EPPR=144.156;GTI=0;LEN=1;MEANALT=4;MQM=56.2857;MQMR=60;NS=4;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=278;QR=2455;RO=65;RPL=0;RPP=18.2106;RPPR=144.156;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=65;SRP=144.156;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:33:17,3,1,8,4:17:665:3,1,8,4:118,40,293,155:-18.8121,-14.2201,-68.0032,-20.6332,-65.6107,-75.0167,0,-44.9708,-51.3818,-52.269,-11.1929,-56.172,-62.5835,-41.9441,-64.675 0|0:29:10,0,0,4,15:10:366:0,0,4,15:0,0,156,586:-45.1649,-48.1752,-78.0737,-48.1752,-78.0737,-78.0737,-35.352,-65.2491,-65.2491,-64.0449,0,-29.8898,-29.8898,-17.0596,-25.3744 0|0:42:19,2,0,12,8:19:714:2,0,12,8:80,0,466,307:-32.5744,-32.3294,-90.2139,-38.294,-90.816,-96.7817,0,-52.5226,-58.4881,-54.8758,-13.0958,-65.6166,-71.5821,-33.2872,-69.1739 0|0:30:19,2,4,3,2:19:710:2,4,3,2:80,154,113,78:-6.92415,-6.05055,-63.5738,0,-51.53,-56.9179,-3.38784,-54.9163,-48.8626,-60.6051,-6.23116,-57.763,-51.7092,-55.0955,-63.7529 dDocent_Contig_8455 7 . G T 960.647 . AB=0.0606061;ABP=58.3499;AC=0;AF=0;AN=8;AO=3;CIGAR=1X1M2X3M1X;DP=154;DPB=154;DPRA=0;EPP=9.52472;EPPR=224.5;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=97;QR=3741;RO=102;RPL=0;RPP=9.52472;RPPR=224.5;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=102;SRP=224.5;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:75:64,1,3,6:64:2344:1,3,6:33,118,232:0,-16.6024,-207.836,-9.55308,-198.429,-200.194,-0.202041,-189.083,-182.043,-189.945 0|0:33:9,2,22,0:9:336:2,22,0:64,838,0:-66.0798,-63.6374,-90.5429,0,-22.4062,-20.9305,-68.789,-91.1449,-27.5532,-96.2981 0|0:27:20,0,5,2:20:743:0,5,2:0,181,80:-8.72699,-14.7476,-75.5498,0,-60.7774,-59.2723,-8.14663,-68.9574,-54.1847,-68.3553 0|0:19:9,0,10,0:9:318:0,10,0:0,356,0:-26.6552,-29.3644,-55.2593,0,-26.2492,-23.2389,-29.3644,-55.2593,-26.2492,-55.2593 dDocent_Contig_8456 13 . G C 35.4309 . AB=0.121212;ABP=44.1367;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=100;DPB=100;DPRA=1.47761;EPP=11.6962;EPPR=211.472;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=161;QR=3809;RO=96;RPL=0;RPP=11.6962;RPPR=211.472;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=96;SRP=211.472;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:33:29,4:29:1165:4:161:-4.94091,0,-95.1935 0/0:22:22,0:22:885:0:0:0,-6.62266,-79.9568 0/0:33:33,0:33:1280:0:0:0,-9.93399,-115.463 0/0:12:12,0:12:479:0:0:0,-3.61236,-43.4606 dDocent_Contig_8457 71 . T C 145.106 . AB=0.227273;ABP=17.2236;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1M1I3M1X5M;DP=43;DPB=44.3;DPRA=1;EPP=13.8677;EPPR=68.1545;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=168;QR=1073;RO=30;RPL=5;RPP=13.8677;RPPR=68.1545;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:17:11,4,2:11:390:4,2:135,71:-7.61831,0,-30.5685,-5.13881,-25.9876,-36.3222 0|0:5:2,1,2:2:73:1,2:33,74:-5.47855,-3.42571,-9.08663,0,-3.33113,-5.38563 0|0:11:11,0,0:11:393:0,0:0,0:0,-3.31133,-35.7103,-3.31133,-35.7103,-35.7103 0|0:10:6,0,3:6:217:0,3:0,105:-6.8115,-8.61768,-26.3537,0,-17.8096,-16.9065 dDocent_Contig_8458 22 . G C 89.9271 . AB=0.2;ABP=22.5536;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=78;DPB=78;DPRA=1.41509;EPP=13.8677;EPPR=155.013;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=58.9714;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=196;QR=2803;RO=70;RPL=0;RPP=13.8677;RPPR=155.013;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=70;SRP=155.013;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:19,5:19:764:5:196:-10.3906,0,-61.4571 0/0:19:18,0:18:725:0:0:0,-5.41854,-62.4012 0/0:23:22,0:22:869:0:0:0,-6.62266,-78.1203 0/0:11:11,0:11:445:0:0:0,-3.31133,-40.4051 dDocent_Contig_8459 87 . G A 92.3295 . AB=0.214286;ABP=22.8638;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=60;DPB=60;DPRA=5;EPP=18.2106;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=243;QR=1820;RO=53;RPL=7;RPP=18.2106;RPPR=118.098;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:22,6:22:761:6:208:-10.6308,0,-60.3818 0/0:22:21,1:21:712:1:35:0,-3.12403,-60.898 0/0:6:6,0:6:208:0:0:0,-1.80618,-19.0596 0/0:4:4,0:4:139:0:0:0,-1.20412,-12.8527 dDocent_Contig_8460 33 . C T 268.498 . AB=0.368421;ABP=8.7247;AC=2;AF=0.25;AN=8;AO=14;CIGAR=1X;DP=62;DPB=62;DPRA=1.58333;EPP=33.4109;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=456;QR=1603;RO=48;RPL=0;RPP=33.4109;RPPR=107.241;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:21,9:21:700:9:284:-16.8379,0,-54.2828 0/0:13:13,0:13:428:0:0:0,-3.91339,-38.8373 0/1:8:3,5:3:103:5:172:-13.4099,0,-7.20173 0/0:11:11,0:11:372:0:0:0,-3.31133,-33.8074 dDocent_Contig_8461 16 . G A 58.0529 . AB=0.185185;ABP=26.2531;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=63;DPB=63;DPRA=2.25;EPP=13.8677;EPPR=128.956;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.672414;PAO=0;PQA=0;PQR=0;PRO=0;QA=170;QR=1922;RO=58;RPL=0;RPP=13.8677;RPPR=128.956;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:6:6,0:6:210:0:0:0,-1.80618,-19.2425 0/0:15:15,0:15:508:0:0:0,-4.51545,-46.0417 0/1:27:22,5:22:694:5:170:-7.50424,0,-54.6273 0/0:15:15,0:15:510:0:0:0,-4.51545,-46.2232 dDocent_Contig_8462 22 . T C 370.981 . AB=0.307692;ABP=15.538;AC=3;AF=0.375;AN=8;AO=13;CIGAR=1X2M;DP=85;DPB=85;DPRA=0;EPP=31.2394;EPPR=148.499;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=6.93889e-18;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=530;QR=2636;RO=67;RPL=0;RPP=31.2394;RPPR=148.499;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=67;SRP=148.499;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:29:28,0,1:28:1113:0,1:0,40:0,-8.42884,-100.059,-4.73419,-96.7638,-96.4628 0|1:25:22,0,3:22:862:0,3:0,123:-3.93904,-10.5617,-81.4266,0,-71.2722,-70.3691 0|1:14:4,0,9:4:163:0,9:0,367:-29.0726,-30.2767,-43.7239,0,-13.4453,-10.7361 0|1:17:13,4,0:13:498:4,0:158,0:-9.48314,0,-40.0445,-13.3965,-41.2486,-54.2533 dDocent_Contig_8463 12 . T G 45.8315 . AB=0;ABP=0;AC=2;AF=0.25;AN=8;AO=2;CIGAR=1X;DP=32;DPB=32;DPRA=0.2;EPP=7.35324;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=21;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=1189;RO=30;RPL=0;RPP=7.35324;RPPR=68.1545;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:81:-3.98081,-0.60206,0 0/0:8:8,0:8:322:0:0:0,-2.40824,-29.3487 0/0:12:12,0:12:468:0:0:0,-3.61236,-42.4676 0/0:10:10,0:10:399:0:0:0,-3.0103,-36.2691 dDocent_Contig_8464 7 . G A 597.112 . AB=0.305882;ABP=30.8307;AC=3;AF=0.375;AN=8;AO=26;CIGAR=1X;DP=91;DPB=91;DPRA=4.72222;EPP=59.4686;EPPR=139.813;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=993;QR=2049;RO=63;RPL=0;RPP=59.4686;RPPR=139.813;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=63;SRP=139.813;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:33:16,16:16:501:16:613:-45.6743,0,-35.5475 0/1:36:29,6:29:937:6:226:-10.0179,0,-73.9591 0/1:16:12,4:12:413:4:154:-9.41698,0,-32.6788 0/0:6:6,0:6:198:0:0:0,-1.80618,-18.1425 dDocent_Contig_8465 60 . G A 949.69 . AB=0.5;ABP=3.0103;AC=4;AF=0.5;AN=8;AO=39;CIGAR=1X;DP=78;DPB=78;DPRA=0;EPP=87.6977;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1383;QR=1362;RO=39;RPL=39;RPP=87.6977;RPPR=87.6977;RPR=0;RUN=1;SAF=39;SAP=87.6977;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:34:13,21:13:462:21:737:-56.4109,0,-31.6789 0/1:14:3,11:3:107:11:391:-31.3137,0,-5.76766 0/1:18:13,5:13:447:5:181:-11.2247,0,-35.136 0/1:12:10,2:10:346:2:74:-3.41352,0,-27.8582 dDocent_Contig_8466 9 . C A 619.298 . AB=0.393939;ABP=9.45891;AC=2;AF=0.25;AN=8;AO=30;CIGAR=1X;DP=194;DPB=194;DPRA=0.517544;EPP=68.1545;EPPR=359.132;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1065;QR=5942;RO=164;RPL=0;RPP=68.1545;RPPR=359.132;RPR=30;RUN=1;SAF=30;SAP=68.1545;SAR=0;SRF=164;SRP=359.132;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:76:76,0:76:2700:0:0:0,-22.8783,-243.192 0/1:49:28,21:28:1002:21:746:-52.7039,0,-75.7275 0/0:52:48,4:48:1781:4:126:0,-4.00386,-148.894 0/1:17:12,5:12:459:5:193:-12.6238,0,-36.542 dDocent_Contig_8468 40 . A G 939.645 . AB=0.291971;ABP=54.5075;AC=4;AF=0.5;AN=8;AO=40;CIGAR=1X;DP=137;DPB=137;DPRA=0;EPP=89.8692;EPPR=213.643;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1569;QR=3862;RO=97;RPL=0;RPP=89.8692;RPPR=213.643;RPR=40;RUN=1;SAF=40;SAP=89.8692;SAR=0;SRF=97;SRP=213.643;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:38:33,5:33:1305:5:182:-5.28484,0,-106.277 0/1:50:37,13:37:1485:13:510:-31.1909,0,-118.845 0/1:25:17,8:17:677:8:322:-21.8215,0,-53.7359 0/1:24:10,14:10:395:14:555:-43.0651,0,-28.6824 dDocent_Contig_8469 10 . C T 884.377 . AB=0.1875;ABP=233.729;AC=4;AF=0.5;AN=8;AO=51;CIGAR=1X;DP=272;DPB=272;DPRA=0;EPP=113.755;EPPR=480.734;GTI=0;LEN=1;MEANALT=1.25;MQM=59.9608;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1960;QR=8276;RO=220;RPL=0;RPP=113.755;RPPR=480.734;RPR=51;RUN=1;SAF=51;SAP=113.755;SAR=0;SRF=220;SRP=480.734;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:115:92,23:92:3502:23:878:-44.7088,0,-280.646 0/1:86:69,17:69:2549:17:650:-32.9371,0,-203.673 0/1:49:43,5:43:1600:5:191:-2.7259,0,-129.411 0/1:22:16,6:16:625:6:241:-15.4438,0,-49.961 dDocent_Contig_8470 66 . T C 60.2498 . AB=0.172414;ABP=30.0414;AC=3;AF=0.375;AN=8;AO=7;CIGAR=1X;DP=56;DPB=56;DPRA=0;EPP=18.2106;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=280;QR=1931;RO=49;RPL=7;RPP=18.2106;RPPR=109.412;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:27:25,2:25:986:2:82:0,-0.348132,-81.2592 0/1:14:11,3:11:431:3:122:-7.15807,0,-34.9238 0/1:10:9,1:9:352:1:39:-0.886264,0,-29.025 0/1:5:4,1:4:162:1:37:-2.19268,0,-13.4618 dDocent_Contig_8471 41 . A T 45.3813 . AB=0.137931;ABP=36.0317;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=111;DPB=111;DPRA=1.06098;EPP=11.6962;EPPR=235.358;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.915888;PAO=0;PQA=0;PQR=0;PRO=0;QA=162;QR=4192;RO=107;RPL=0;RPP=11.6962;RPPR=235.358;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=107;SRP=235.358;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:55:55,0:55:2158:0:0:0,-16.5566,-194.41 0/1:29:25,4:25:957:4:162:-6.23709,0,-77.6901 0/0:10:10,0:10:400:0:0:0,-3.0103,-36.3595 0/0:17:17,0:17:677:0:0:0,-5.11751,-61.2609 dDocent_Contig_8472 31 . C T 196.088 . AB=0.333333;ABP=8.80089;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=178;DPB=178;DPRA=0.467532;EPP=20.3821;EPPR=369.989;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=0.988166;PAO=0;PQA=0;PQR=0;PRO=0;QA=313;QR=6760;RO=169;RPL=0;RPP=20.3821;RPPR=369.989;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=169;SRP=369.989;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:67:67,0:67:2681:0:0:0,-20.169,-241.414 0/0:50:50,0:50:2001:0:0:0,-15.0515,-180.278 0/0:37:36,0:36:1455:0:0:0,-10.8371,-130.863 0/1:24:16,8:16:623:8:313:-21.3078,0,-49.1678 dDocent_Contig_8473 111 . G A 156.296 . AB=0.4375;ABP=3.55317;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=40;DPB=40;DPRA=2;EPP=18.2106;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.939394;PAO=0;PQA=0;PQR=0;PRO=0;QA=239;QR=1118;RO=33;RPL=0;RPP=18.2106;RPPR=74.6689;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=74.6689;SRR=33;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:9,7:9:309:7:239:-17.0274,0,-23.327 0/0:11:11,0:11:379:0:0:0,-3.31133,-34.4422 0/0:10:10,0:10:339:0:0:0,-3.0103,-30.8382 0/0:3:3,0:3:91:0:0:0,-0.90309,-8.49117 dDocent_Contig_8474 115 . G A 109.208 . AB=0.4;ABP=3.87889;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X2M1X;DP=34;DPB=34;DPRA=1.42857;EPP=11.6962;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=145;QR=974;RO=28;RPL=0;RPP=11.6962;RPPR=63.8115;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=63.8115;SRR=28;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:13:13,0,0:13:457:0,0:0,0:0,-3.91339,-41.4639,-3.91339,-41.4639,-41.4639 0|0:10:8,0,2:8:272:0,2:0,73:-3.921,-6.32924,-28.371,0,-22.4016,-21.7995 0|1:10:6,4,0:6:209:4,0:145,0:-10.3953,0,-16.1403,-12.2015,-17.3444,-29.1892 0|0:1:1,0,0:1:36:0,0:0,0:0,-0.30103,-3.59827,-0.30103,-3.59827,-3.59827 dDocent_Contig_8475 60 . T A 773.5 . AB=0.333333;ABP=26.8965;AC=3;AF=0.375;AN=8;AO=37;CIGAR=1X;DP=165;DPB=165;DPRA=0;EPP=83.3548;EPPR=280.959;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1382;QR=4900;RO=128;RPL=37;RPP=83.3548;RPPR=280.959;RPR=0;RUN=1;SAF=37;SAP=83.3548;SAR=0;SRF=128;SRP=280.959;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:66:62,4:62:2360:4:143:0,-6.64906,-199.39 0/1:65:44,21:44:1690:21:798:-52.5778,0,-132.792 0/1:25:17,8:17:658:8:289:-18.8299,0,-52.0312 0/1:9:5,4:5:192:4:152:-11.3403,0,-14.9407 dDocent_Contig_8477 18 . T C 503.057 . AB=0.190789;ABP=129.241;AC=3;AF=0.375;AN=8;AO=29;CIGAR=1X;DP=156;DPB=156;DPRA=12.6667;EPP=65.983;EPPR=278.787;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1116;QR=4513;RO=127;RPL=0;RPP=65.983;RPPR=278.787;RPR=29;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=127;SRP=278.787;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:83:72,11:72:2526:11:431:-14.1511,0,-202.593 0/1:41:30,11:30:1065:11:447:-28.2438,0,-83.8063 0/1:28:21,7:21:777:7:238:-13.3086,0,-61.8269 0/0:4:4,0:4:145:0:0:0,-1.20412,-13.404 dDocent_Contig_8478 31 . A G 251.765 . AB=0.322581;ABP=11.486;AC=1;AF=0.125;AN=8;AO=10;CIGAR=1X;DP=59;DPB=59;DPRA=3.32143;EPP=24.725;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=395;QR=1885;RO=49;RPL=0;RPP=24.725;RPPR=109.412;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:21,10:21:784:10:395:-26.5743,0,-61.5302 0/0:16:16,0:16:633:0:0:0,-4.81648,-57.3041 0/0:9:9,0:9:360:0:0:0,-2.70927,-32.7636 0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0697 dDocent_Contig_8479 20 . C A 162.068 . AB=0.258065;ABP=18.771;AC=2;AF=0.25;AN=8;AO=8;CIGAR=1X;DP=44;DPB=44;DPRA=2.38462;EPP=20.3821;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=313;QR=1458;RO=36;RPL=0;RPP=20.3821;RPPR=81.1833;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:10,6:10:406:6:236:-16.7946,0,-32.0839 0/1:15:13,2:13:530:2:77:-2.79275,0,-43.5306 0/0:2:2,0:2:80:0:0:0,-0.60206,-7.59179 0/0:11:11,0:11:442:0:0:0,-3.31133,-40.1349 dDocent_Contig_8480 30 . G A 325.261 . AB=0.147059;ABP=186.947;AC=3;AF=0.375;AN=8;AO=25;CIGAR=1X;DP=202;DPB=202;DPRA=1.77083;EPP=57.2971;EPPR=387.361;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=978;QR=7067;RO=177;RPL=0;RPP=57.2971;RPPR=387.361;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=177;SRP=387.361;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:80:71,9:71:2829:9:349:-7.6795,0,-230.63 0/1:47:39,8:39:1552:8:318:-14.8372,0,-125.763 0/1:43:35,8:35:1410:8:311:-15.4073,0,-114.206 0/0:32:32,0:32:1276:0:0:0,-9.63296,-115.11 dDocent_Contig_8481 7 . G A 1216.21 . AB=0.468085;ABP=3.84193;AC=3;AF=0.375;AN=8;AO=47;CIGAR=1X3M16I2M;DP=133;DPB=258.333;DPRA=0;EPP=105.07;EPPR=183.243;GTI=0;LEN=1;MEANALT=1.75;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1830;QR=2928;RO=83;RPL=0;RPP=105.07;RPPR=183.243;RPR=47;RUN=1;SAF=47;SAP=105.07;SAR=0;SRF=83;SRP=183.243;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:58:25,32:25:886:32:1249:-95.2663,0,-62.6201 0|0:39:34,3:34:1190:3:116:0,-0.529242,-96.6767 0|1:28:21,7:21:744:7:271:-16.3276,0,-58.8458 0|1:8:3,5:3:108:5:194:-15.4246,0,-7.66638 dDocent_Contig_8482 42 . C G 34.2069 . AB=0.166667;ABP=20.3821;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=122;DPB=122;DPRA=1.60317;EPP=16.0391;EPPR=252.73;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=228;QR=4390;RO=115;RPL=0;RPP=16.0391;RPPR=252.73;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=115;SRP=252.73;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:35:32,2:32:1228:2:79:0,-2.92931,-103.4 0/0:48:47,1:47:1775:1:36:0,-10.8512,-156.374 0/0:21:21,0:21:807:0:0:0,-6.32163,-72.9423 0/1:18:15,3:15:580:3:113:-5.11949,0,-47.1188 dDocent_Contig_8483 76 . T C 60.3975 . AB=0.162162;ABP=39.6906;AC=2;AF=0.25;AN=8;AO=6;CIGAR=1X2M1X1M1X;DP=48;DPB=48;DPRA=3.36364;EPP=16.0391;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=207;QR=1373;RO=42;RPL=6;RPP=16.0391;RPPR=94.2121;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:20:18,2:18:576:2:68:-0.437331,0,-46.1261 0|0:10:10,0:10:335:0:0:0,-3.0103,-30.4755 0|1:17:13,4:13:427:4:139:-7.73518,0,-33.6298 0|0:1:1,0:1:35:0:0:0,-0.30103,-3.49863 dDocent_Contig_8484 23 . T C 283.935 . AB=0.285714;ABP=19.7617;AC=1;AF=0.125;AN=8;AO=12;CIGAR=1X;DP=81;DPB=81;DPRA=3.23077;EPP=29.068;EPPR=152.842;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=471;QR=2582;RO=69;RPL=0;RPP=29.068;RPPR=152.842;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=69;SRP=152.842;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:14:14,0:14:515:0:0:0,-4.21442,-46.6783 0/0:21:21,0:21:810:0:0:0,-6.32163,-73.2235 0/1:42:30,12:30:1108:12:471:-30.0924,0,-87.3649 0/0:4:4,0:4:149:0:0:0,-1.20412,-13.7733 dDocent_Contig_8485 30 . C T 145.993 . AB=0.233333;ABP=21.5402;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X;DP=84;DPB=84;DPRA=3.94118;EPP=22.5536;EPPR=165.871;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=351;QR=2925;RO=75;RPL=0;RPP=22.5536;RPPR=165.871;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=75;SRP=165.871;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:23,7:23:899:7:274:-15.9972,0,-72.1918 0/0:37:35,2:35:1372:2:77:0,-3.82897,-116.435 0/0:9:9,0:9:347:0:0:0,-2.70927,-31.5848 0/0:8:8,0:8:307:0:0:0,-2.40824,-27.9876 dDocent_Contig_8486 34 . G C 372.867 . AB=0.384615;ABP=7.52028;AC=2;AF=0.25;AN=8;AO=15;CIGAR=1X3M2X2M1X;DP=48;DPB=48;DPRA=4.33333;EPP=35.5824;EPPR=70.3259;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.8;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=572;QR=1194;RO=31;RPL=0;RPP=35.5824;RPPR=70.3259;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:8:8,0:8:313:0:0:0,-2.40824,-28.535 0|1:19:10,7:10:384:7:269:-19.0779,0,-29.4223 0|1:20:12,8:12:458:8:303:-21.6062,0,-35.5475 0|0:1:1,0:1:39:0:0:0,-0.30103,-3.89656 dDocent_Contig_8490 11 . A T 542.481 . AB=0.0813953;ABP=133.905;AC=0;AF=0;AN=8;AO=8;CIGAR=2X2M1X;DP=150;DPB=150;DPRA=0;EPP=20.3821;EPPR=254.901;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=309;QR=4498;RO=116;RPL=0;RPP=20.3821;RPPR=254.901;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=116;SRP=254.901;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:64:61,2,1:61:2345:2,1:81,40:0,-11.6804,-203.546,-15.0694,-200.853,-207.232 0|0:32:25,6,1:25:973:6,1:240,40:-12.243,0,-78.1415,-16.4737,-76.6522,-96.122 0|0:18:6,11,1:6:238:11,1:428,40:-33.3563,0,-16.2775,-31.8665,-16.2933,-51.1598 0|0:36:24,7,5:24:942:7,5:260,189:-14.0466,0,-75.3775,-5.77611,-61.9947,-81.76 dDocent_Contig_8492 21 . C T 920.633 . AB=0.268456;ABP=72.3954;AC=3;AF=0.375;AN=8;AO=40;CIGAR=1X;DP=225;DPB=225;DPRA=0.653509;EPP=89.8692;EPPR=404.733;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.994595;PAO=0;PQA=0;PQR=0;PRO=0;QA=1570;QR=7264;RO=185;RPL=0;RPP=89.8692;RPPR=404.733;RPR=40;RUN=1;SAF=40;SAP=89.8692;SAR=0;SRF=185;SRP=404.733;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:76:76,0:76:2953:0:0:0,-22.8783,-265.859 0/1:90:63,27:63:2500:27:1062:-68.7718,0,-198.052 0/1:36:27,9:27:1050:9:353:-21.2893,0,-83.9485 0/1:23:19,4:19:761:4:155:-7.40016,0,-61.888 dDocent_Contig_8493 13 . G C 805.685 . AB=0.199029;ABP=165.091;AC=2;AF=0.25;AN=8;AO=42;CIGAR=1X;DP=405;DPB=405;DPRA=0.433712;EPP=94.2121;EPPR=791.255;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.9972;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1656;QR=14244;RO=363;RPL=0;RPP=94.2121;RPPR=791.255;RPR=42;RUN=1;SAF=42;SAP=94.2121;SAR=0;SRF=363;SRP=791.255;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:176:176,0:176:6905:0:0:0,-52.9813,-621.171 0/1:138:104,34:104:4085:34:1341:-79.4114,0,-326.098 0/1:68:61,7:61:2397:7:274:-4.55479,0,-195.428 0/0:23:22,1:22:857:1:41:0,-2.82912,-73.3421 dDocent_Contig_8495 18 . C G 462.082 . AB=0.444444;ABP=3.9754;AC=1;AF=0.125;AN=8;AO=17;CIGAR=1X;DP=69;DPB=69;DPRA=2.63158;EPP=39.9253;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=690;QR=2093;RO=52;RPL=0;RPP=39.9253;RPPR=115.927;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:17:17,0:17:684:0:0:0,-5.11751,-61.8897 0/1:36:20,16:20:812:16:649:-47.906,0,-62.5579 0/0:14:13,1:13:515:1:41:0,-0.119853,-42.6017 0/0:2:2,0:2:82:0:0:0,-0.60206,-7.77968 dDocent_Contig_8496 16 . T A 217.296 . AB=0.207547;ABP=42.3836;AC=2;AF=0.25;AN=8;AO=12;CIGAR=1X;DP=100;DPB=100;DPRA=1.25397;EPP=29.068;EPPR=194.1;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=489;QR=3522;RO=88;RPL=0;RPP=29.068;RPPR=194.1;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=88;SRP=194.1;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:11,7:11:441:7:286:-20.6963,0,-34.6259 0/1:35:31,4:31:1233:4:162:-4.43091,0,-100.706 0/0:26:25,1:25:1007:1:41:0,-3.73221,-86.8294 0/0:21:21,0:21:841:0:0:0,-6.32163,-76.0022 dDocent_Contig_8497 92 . T A 1276.95 . AB=0.5;ABP=3.0103;AC=4;AF=0.5;AN=8;AO=53;CIGAR=1X;DP=106;DPB=106;DPRA=0;EPP=118.098;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1841;QR=1836;RO=53;RPL=53;RPP=118.098;RPPR=118.098;RPR=0;RUN=1;SAF=53;SAP=118.098;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:8,14:8:275:14:474:-36.3593,0,-18.4619 0/1:55:29,26:29:999:26:919:-66.4712,0,-73.664 0/1:16:9,7:9:318:7:247:-17.7566,0,-24.1446 0/1:13:7,6:7:244:6:201:-14.5056,0,-18.3864 dDocent_Contig_8498 30 . G C 337.079 . AB=0.209302;ABP=66.1345;AC=3;AF=0.375;AN=8;AO=18;CIGAR=1X;DP=88;DPB=88;DPRA=14.3333;EPP=42.0968;EPPR=152.842;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=708;QR=2720;RO=69;RPL=0;RPP=42.0968;RPPR=152.842;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=69;SRP=152.842;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:25,4:25:1005:4:149:-5.04085,0,-82.0163 0/1:41:33,7:33:1277:7:275:-12.9477,0,-103.057 0/1:16:9,7:9:359:7:284:-21.1169,0,-27.8561 0/0:2:2,0:2:79:0:0:0,-0.60206,-7.49724 dDocent_Contig_8499 65 . G T 101.92 . AB=0.294118;ABP=9.26925;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=57;DPB=57;DPRA=1.275;EPP=13.8677;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=185;QR=1974;RO=52;RPL=5;RPP=13.8677;RPPR=115.927;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:16:16,0:16:601:0:0:0,-4.81648,-54.4248 0/1:17:12,5:12:457:5:185:-11.891,0,-36.3615 0/0:14:14,0:14:541:0:0:0,-4.21442,-49.0359 0/0:10:10,0:10:375:0:0:0,-3.0103,-34.1004 dDocent_Contig_8500 7 . G A 721.084 . AB=0.165493;ABP=279.032;AC=3;AF=0.375;AN=8;AO=50;CIGAR=1X;DP=320;DPB=320;DPRA=0;EPP=111.584;EPPR=569.765;GTI=0;LEN=1;MEANALT=2.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.961686;PAO=0;PQA=0;PQR=0;PRO=0;QA=1899;QR=8343;RO=261;RPL=0;RPP=111.584;RPPR=569.765;RPR=50;RUN=1;SAF=50;SAP=111.584;SAR=0;SRF=261;SRP=569.765;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:113:90,18:90:2842:18:686:-29.2626,0,-223.184 0/1:126:100,24:100:3172:24:901:-43.9031,0,-248.157 0/1:45:39,5:39:1251:5:195:-4.33901,0,-99.2801 0/0:36:32,3:32:1078:3:117:0,-0.000420618,-86.3983 dDocent_Contig_8501 14 . A G 1040.92 . AB=0.0882353;ABP=153.225;AC=0;AF=0;AN=8;AO=9;CIGAR=2X2M1X;DP=133;DPB=133;DPRA=25.5;EPP=22.5536;EPPR=183.243;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=361;QR=3244;RO=83;RPL=0;RPP=22.5536;RPPR=183.243;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=83;SRP=183.243;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:71:49,17,5:49:1919:17,5:671,201:-40.4538,0,-152.666,-38.6385,-141.219,-194.924 0|0:31:16,11,4:16:630:11,4:434,160:-30.8883,0,-48.5103,-22.5232,-38.6403,-73.1453 0|0:29:16,13,0:16:617:13,0:517,0:-38.1471,0,-47.1283,-42.9636,-51.0417,-93.6134 0|0:2:2,0,0:2:78:0,0:0,0:0,-0.60206,-7.4033,-0.60206,-7.4033,-7.4033 dDocent_Contig_8502 1 . N G 108.022 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=57.6667;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=116;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:116:-10.8016,-0.90309,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_8503 106 . N A 88.6513 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=2X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=95;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:3:0,3:0:0:3:95:-8.86459,-0.90309,0 .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. dDocent_Contig_8504 77 . T C 319.195 . AB=0.285714;ABP=25.3454;AC=3;AF=0.375;AN=8;AO=16;CIGAR=13M1X2M1X;DP=66;DPB=66.3529;DPRA=1.86667;EPP=37.7539;EPPR=81.1833;GTI=0;LEN=1;MEANALT=3.33333;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=555;QR=1280;RO=36;RPL=16;RPP=37.7539;RPPR=81.1833;RPR=0;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:10:10,0,0,0:10:353:0,0,0:0,0,0:0,-3.0103,-32.109,-3.0103,-32.109,-32.109,-3.0103,-32.109,-32.109,-32.109 0|1:20:9,5,4,2:9:320:5,4,2:175,138,71:-11.5302,0,-24.577,-3.03032,-14.8735,-27.9064,-8.45298,-20.2967,-23.3251,-33.9326 0|1:22:10,7,1,3:10:357:7,1,3:245,34,104:-16.9577,0,-27.0411,-17.2087,-26.39,-46.0282,-11.5076,-20.6921,-37.8746,-39.7296 0|1:14:7,4,1,2:7:250:4,1,2:135,35,69:-8.8295,0,-19.1857,-8.08755,-17.5425,-28.1782,-5.32956,-14.7863,-22.8743,-25.12 dDocent_Contig_8505 17 . A C 152.417 . AB=0.16129;ABP=64.7922;AC=2;AF=0.25;AN=8;AO=11;CIGAR=1X;DP=101;DPB=101;DPRA=6.4;EPP=26.8965;EPPR=198.443;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=444;QR=3560;RO=90;RPL=0;RPP=26.8965;RPPR=198.443;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=90;SRP=198.443;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:34:33,1:33:1311:1:38:0,-6.43775,-114.457 0/1:49:41,8:41:1609:8:326:-14.9592,0,-130.303 0/1:13:11,2:11:438:2:80:-3.67819,0,-35.8615 0/0:5:5,0:5:202:0:0:0,-1.50515,-18.5619 dDocent_Contig_8506 36 . C A 202.415 . AB=0.227273;ABP=31.4368;AC=1;AF=0.125;AN=8;AO=10;CIGAR=1X;DP=111;DPB=111;DPRA=1.97015;EPP=24.725;EPPR=222.329;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=387;QR=3933;RO=101;RPL=0;RPP=24.725;RPPR=222.329;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=101;SRP=222.329;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:48:48,0:48:1892:0:0:0,-14.4494,-170.5 0/1:44:34,10:34:1313:10:387:-21.9405,0,-105.195 0/0:13:13,0:13:515:0:0:0,-3.91339,-46.697 0/0:6:6,0:6:213:0:0:0,-1.80618,-19.5064 dDocent_Contig_8507 16 . T G 32.8419 . AB=0.196429;ABP=92.6611;AC=2;AF=0.25;AN=8;AO=23;CIGAR=1X;DP=187;DPB=187;DPRA=1.61458;EPP=52.9542;EPPR=356.96;GTI=0;LEN=1;MEANALT=1.33333;MQM=20.4783;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=925;QR=6468;RO=163;RPL=0;RPP=52.9542;RPPR=356.96;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=163;SRP=356.96;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:76:63,13:63:2512:13:519:-2.81971,0,-203.342 0/0:43:42,1:42:1697:1:41:0,-11.7448,-151.75 0/1:36:26,9:26:1031:9:365:-3.84456,0,-82.168 0/0:32:32,0:32:1228:0:0:0,-9.63296,-110.791 dDocent_Contig_8508 107 . N G 560.266 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=8;CIGAR=1X4M;DP=18;DPB=18;DPRA=0.4;EPP=20.3821;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=280;QR=0;RO=0;RPL=0;RPP=20.3821;RPPR=0;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:7:0,0,7:0:0:0,7:0,245:-22.3912,-22.3912,-22.3912,-2.10721,-2.10721,0 1|1:10:0,10,0:0:0:10,0:326,0:-29.658,-3.0103,0,-29.658,-3.0103,-29.658 .:.:.:.:.:.:.:. 1|1:1:0,0,1:0:0:0,1:0,35:-3.49863,-3.49863,-3.49863,-0.30103,-0.30103,0 dDocent_Contig_8509 145 . T G 67.6355 . AB=0.190476;ABP=20.4855;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X1M1X1M1X1M1X;DP=48;DPB=48;DPRA=2.33333;EPP=11.6962;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=160;QR=1768;RO=44;RPL=0;RPP=11.6962;RPPR=98.5551;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=98.5551;SRR=44;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:3:3,0:3:122:0:0:0,-0.90309,-11.3725 0|1:21:17,4:17:688:4:160:-8.46238,0,-55.9285 0|0:11:11,0:11:434:0:0:0,-3.31133,-39.4106 0|0:13:13,0:13:524:0:0:0,-3.91339,-47.5075 dDocent_Contig_8510 49 . G A 5326.15 . AB=0.0477612;ABP=598.117;AC=0;AF=0;AN=8;AO=16;CIGAR=2X2M7I8M;DP=335;DPB=344.333;DPRA=0;EPP=37.7539;EPPR=291.816;GTI=0;LEN=1;MEANALT=3;MQM=59.8125;MQMR=60;NS=4;NUMALT=2;ODDS=2.77556e-17;PAIRED=0.9375;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=615;QR=4960;RO=133;RPL=16;RPP=37.7539;RPPR=291.816;RPR=0;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=133;SRP=291.816;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:107:39,10,52:39:1472:10,52:383,2051:-157.006,-137.319,-254.946,0,-89.2095,-104.986 0|0:138:49,2,85:49:1827:2,85:76,3376:-263.323,-271.841,-420.797,0,-143.468,-124.113 0|0:77:40,3,34:40:1482:3,34:117,1333:-97.5735,-99.9974,-220.332,0,-111.612,-110.996 0|0:13:5,1,7:5:179:1,7:39,286:-22.1105,-20.4121,-34.6848,0,-11.357,-12.461 dDocent_Contig_8511 41 . A C 1341.2 . AB=0.613333;ABP=11.3777;AC=2;AF=0.25;AN=8;AO=47;CIGAR=1X;DP=149;DPB=149;DPRA=0.640523;EPP=105.07;EPPR=224.5;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1813;QR=3865;RO=102;RPL=0;RPP=105.07;RPPR=224.5;RPR=47;RUN=1;SAF=47;SAP=105.07;SAR=0;SRF=102;SRP=224.5;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:51:51,0:51:1986:0:0:0,-15.3525,-178.954 0/1:60:17,43:17:617:43:1653:-130.939,0,-37.7744 0/0:23:22,1:22:818:1:41:0,-2.82912,-69.8324 0/1:15:12,3:12:444:3:119:-6.57956,0,-35.7804 dDocent_Contig_8513 76 . A G 629.455 . AB=0.258621;ABP=61.7149;AC=4;AF=0.5;AN=8;AO=30;CIGAR=1M1X12M;DP=116;DPB=116.5;DPRA=0;EPP=68.1545;EPPR=128.956;GTI=0;LEN=1;MEANALT=4.75;MQM=54.1;MQMR=60;NS=4;NUMALT=4;ODDS=0;PAIRED=0.6;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=949;QR=1903;RO=58;RPL=0;RPP=68.1545;RPPR=128.956;RPR=30;RUN=1;SAF=0;SAP=68.1545;SAR=30;SRF=0;SRP=128.956;SRR=58;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:61:32,1,2,0,20:32:1059:1,2,0,20:33,66,0,687:-46.2376,-53.2015,-138.563,-50.5324,-133.527,-135.594,-55.8706,-138.864,-136.196,-141.532,0,-83.0644,-80.3956,-85.7332,-79.7126 0|1:25:18,2,0,3,1:18:587:2,0,3,1:54,0,92,31:-1.97672,-3.19518,-50.0351,-7.39526,-50.6372,-54.8338,0,-43.272,-47.468,-46.565,-4.89972,-48.1488,-52.3453,-44.9796,-52.0443 0|1:24:6,5,5,1,5:6:188:5,5,1,5:165,148,30,98:-11.5179,0,-13.6225,-1.50472,-3.30795,-15.1232,-10.9277,-12.7312,-14.2323,-25.7463,-7.0822,-8.88205,-10.3859,-19.7967,-20.6857 0|1:6:2,0,0,0,4:2:69:0,0,0,4:0,0,0,133:-10.4926,-11.0946,-16.7045,-11.0946,-16.7045,-16.7045,-11.0946,-16.7045,-16.7045,-16.7045,0,-5.9506,-5.9506,-5.9506,-4.74648 dDocent_Contig_8514 14 . G T 45.7225 . AB=0.128205;ABP=49.8362;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=144;DPB=144;DPRA=1.11429;EPP=13.8677;EPPR=304.845;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=196;QR=5546;RO=139;RPL=0;RPP=13.8677;RPPR=304.845;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=139;SRP=304.845;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:44:44,0:44:1723:0:0:0,-13.2453,-155.289 0/0:45:45,0:45:1812:0:0:0,-13.5463,-163.285 0/1:39:34,5:34:1372:5:196:-6.27121,0,-111.995 0/0:16:16,0:16:639:0:0:0,-4.81648,-57.8437 dDocent_Contig_8515 18 . A C 361.251 . AB=0.0888889;ABP=69.0713;AC=0;AF=0;AN=8;AO=4;CIGAR=1M1D4M1X1M;DP=97;DPB=94.25;DPRA=5;EPP=11.6962;EPPR=165.871;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.906667;PAO=0;PQA=0;PQR=0;PRO=0;QA=146;QR=2976;RO=75;RPL=0;RPP=11.6962;RPPR=165.871;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=75;SRP=165.871;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:45:31,4,10:31:1236:4,10:146,391:-22.8273,-20.2422,-120.832,0,-89.8971,-98.8075 0|0:31:24,0,7:24:946:0,7:0,285:-16.6925,-23.9172,-101.738,0,-78.2242,-76.117 0|0:12:11,0,1:11:436:0,1:0,41:-0.482207,-3.79354,-39.6692,0,-36.284,-35.9829 0|0:9:9,0,0:9:358:0,0:0,0:0,-2.70927,-32.5825,-2.70927,-32.5825,-32.5825 dDocent_Contig_8517 37 . G T 308.875 . AB=0.216216;ABP=54.7735;AC=3;AF=0.375;AN=8;AO=16;CIGAR=1X;DP=125;DPB=125;DPRA=0.48366;EPP=37.7539;EPPR=239.701;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=638;QR=4349;RO=109;RPL=0;RPP=37.7539;RPPR=239.701;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=109;SRP=239.701;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:51:51,0:51:2042:0:0:0,-15.3525,-183.967 0/1:46:36,10:36:1433:10:404:-22.8727,0,-115.376 0/1:25:20,5:20:796:5:193:-10.2143,0,-64.433 0/1:3:2,1:2:78:1:41:-3.19148,0,-6.50021 dDocent_Contig_8518 11 . T A 934.351 . AB=0.333333;ABP=31.9633;AC=4;AF=0.5;AN=8;AO=40;CIGAR=2X2M2I5M;DP=120;DPB=128.889;DPRA=0;EPP=89.8692;EPPR=176.728;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1498;QR=3152;RO=80;RPL=0;RPP=89.8692;RPPR=176.728;RPR=40;RUN=1;SAF=40;SAP=89.8692;SAR=0;SRF=80;SRP=176.728;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:52:29,23:29:1162:23:859:-61.9801,0,-89.2107 0|1:24:19,5:19:741:5:189:-10.1512,0,-59.7901 0|1:31:28,3:28:1089:3:114:-1.30042,0,-88.9678 0|1:13:4,9:4:160:9:336:-26.6805,0,-10.8706 dDocent_Contig_8519 138 . A C 122.026 . AB=0.225806;ABP=23.254;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=105;DPB=105;DPRA=1.25676;EPP=18.2106;EPPR=215.815;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=251;QR=3292;RO=98;RPL=0;RPP=18.2106;RPPR=215.815;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=215.815;SRR=98;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:24,7:24:814:7:251:-13.6005,0,-64.2339 0/0:48:48,0:48:1613:0:0:0,-14.4494,-145.438 0/0:23:23,0:23:755:0:0:0,-6.92369,-68.2505 0/0:3:3,0:3:110:0:0:0,-0.90309,-10.2596 dDocent_Contig_8521 44 . G A 91.2732 . AB=0.185185;ABP=26.2531;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=91;DPB=91;DPRA=1.16667;EPP=16.0391;EPPR=187.585;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=244;QR=3437;RO=85;RPL=0;RPP=16.0391;RPPR=187.585;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=85;SRP=187.585;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:22,5:22:897:5:203:-10.5252,0,-72.9066 0/0:22:21,1:21:843:1:41:0,-2.52809,-72.0874 0/0:35:35,0:35:1415:0:0:0,-10.536,-127.6 0/0:7:7,0:7:282:0:0:0,-2.10721,-25.7532 dDocent_Contig_8522 7 . C A 41.3178 . AB=0.138889;ABP=43.7857;AC=2;AF=0.25;AN=8;AO=5;CIGAR=1X;DP=84;DPB=84;DPRA=0.75;EPP=13.8677;EPPR=174.557;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=195;QR=3050;RO=79;RPL=0;RPP=13.8677;RPPR=174.557;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=79;SRP=174.557;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:40:40,0:40:1540:0:0:0,-12.0412,-138.871 0/1:19:16,3:16:620:3:117:-5.19081,0,-50.4194 0/1:17:15,2:15:582:2:78:-2.28596,0,-47.6056 0/0:8:8,0:8:308:0:0:0,-2.40824,-28.0822 dDocent_Contig_8526 23 . C T 40.2818 . AB=0.125;ABP=42.0968;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=56;DPB=56;DPRA=4;EPP=11.6962;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=163;QR=2081;RO=52;RPL=0;RPP=11.6962;RPPR=115.927;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:32:28,4:28:1134:4:163:-5.42547,0,-92.7039 0/0:14:14,0:14:555:0:0:0,-4.21442,-50.2872 0/0:1:1,0:1:32:0:0:0,-0.30103,-3.19931 0/0:9:9,0:9:360:0:0:0,-2.70927,-32.7629 dDocent_Contig_8527 80 . T A 566.637 . AB=0.52381;ABP=3.21711;AC=3;AF=0.375;AN=8;AO=22;CIGAR=1X;DP=47;DPB=47;DPRA=2.8;EPP=50.7827;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=818;QR=970;RO=25;RPL=22;RPP=50.7827;RPPR=57.2971;RPR=0;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:14,8:14:541:8:308:-21.4595,0,-42.4128 0/1:17:5,12:5:195:12:432:-34.0909,0,-12.8067 0/0:5:5,0:5:195:0:0:0,-1.50515,-17.9242 0/1:3:1,2:1:39:2:78:-6.50038,0,-2.99347 dDocent_Contig_8528 8 . T C 1770.41 . AB=0.21327;ABP=304.361;AC=4;AF=0.5;AN=8;AO=90;CIGAR=1X;DP=422;DPB=422;DPRA=0;EPP=198.443;EPPR=723.939;GTI=0;LEN=1;MEANALT=1;MQM=59.7333;MQMR=59.1717;NS=4;NUMALT=1;ODDS=0;PAIRED=0.977778;PAIREDR=0.981928;PAO=0;PQA=0;PQR=0;PRO=0;QA=3452;QR=12691;RO=332;RPL=0;RPP=198.443;RPPR=723.939;RPR=90;RUN=1;SAF=90;SAP=198.443;SAR=0;SRF=332;SRP=723.939;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:170:129,41:129:4950:41:1576:-90.9341,0,-394.079 0/1:177:143,34:143:5468:34:1291:-63.1928,0,-432.284 0/1:53:44,9:44:1680:9:351:-15.504,0,-135.504 0/1:22:16,6:16:593:6:234:-14.8084,0,-47.0772 dDocent_Contig_8529 7 . C T 34.8365 . AB=0.112903;ABP=83.705;AC=1;AF=0.125;AN=8;AO=14;CIGAR=1X;DP=255;DPB=255;DPRA=2.09524;EPP=33.4109;EPPR=526.335;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=522;QR=9325;RO=241;RPL=0;RPP=33.4109;RPPR=526.335;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=241;SRP=526.335;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:102:97,5:97:3756:5:183:0,-13.8819,-321.318 0/0:56:54,2:54:2079:2:78:0,-9.45421,-179.939 0/1:62:55,7:55:2139:7:261:-5.18248,0,-174.068 0/0:35:35,0:35:1351:0:0:0,-10.536,-121.875 dDocent_Contig_8530 24 . T C 1164.31 . AB=0.216667;ABP=86.6844;AC=4;AF=0.5;AN=8;AO=26;CIGAR=1X2M;DP=120;DPB=120;DPRA=0;EPP=59.4686;EPPR=150.67;GTI=0;LEN=1;MEANALT=1.75;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.923077;PAIREDR=0.911765;PAO=0;PQA=0;PQR=0;PRO=0;QA=1046;QR=2707;RO=68;RPL=0;RPP=59.4686;RPPR=150.67;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=68;SRP=150.67;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:35:11,21,3:11:439:21,3:822,120:-64.2645,0,-29.8336,-57.6901,-26.2704,-92.9456 0|1:40:28,0,12:28:1121:0,12:0,476:-31.1495,-39.5784,-131.928,0,-92.7471,-89.1347 0|1:12:9,0,2:9:359:0,2:0,82:-4.05889,-6.76816,-36.3261,0,-29.5563,-28.9542 0|1:33:20,4,9:20:788:4,9:159,368:-24.355,-17.2894,-80.9014,0,-51.7332,-62.1142 dDocent_Contig_8531 8 . T C 1326.76 . AB=0.0652174;ABP=305.128;AC=0;AF=0;AN=8;AO=12;CIGAR=1X2M1X;DP=225;DPB=225;DPRA=0;EPP=29.068;EPPR=309.188;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=0.992908;PAO=0;PQA=0;PQR=0;PRO=0;QA=473;QR=5458;RO=141;RPL=0;RPP=29.068;RPPR=309.188;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=141;SRP=309.188;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:106:61,10,26,9:61:2367:10,26,9:394,989,367:-62.2018,-48.1473,-239.616,0,-162.052,-186.641,-50.4027,-212.467,-164.309,-242.174 0|0:78:51,2,22,3:51:1980:2,22,3:79,815,123:-51.2952,-60.1453,-222.237,0,-156.17,-156.049,-56.5133,-212.708,-152.54,-218.306 0|0:26:19,0,6,1:19:724:0,6,1:0,233,37:-13.4419,-19.1615,-78.5443,0,-59.3966,-57.5904,-16.1371,-75.5178,-56.3701,-75.2167 0|0:15:10,0,5,0:10:387:0,5,0:0,192,0:-13.1346,-16.1449,-47.9357,0,-32.1755,-30.6703,-16.1449,-47.9357,-32.1755,-47.9357 dDocent_Contig_8532 44 . C A 140.381 . AB=0.3;ABP=9.95901;AC=2;AF=0.25;AN=8;AO=6;CIGAR=1X;DP=45;DPB=45;DPRA=0.8;EPP=16.0391;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=239;QR=1574;RO=39;RPL=0;RPP=16.0391;RPPR=87.6977;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:7:7,0:7:283:0:0:0,-2.10721,-25.8434 0/0:18:18,0:18:725:0:0:0,-5.41854,-65.5734 0/1:10:9,1:9:362:1:35:-0.488329,0,-29.9328 0/1:10:5,5:5:204:5:204:-15.7337,0,-15.7337 dDocent_Contig_8534 25 . T C 77.7801 . AB=0.15;ABP=45.5712;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=164;DPB=164;DPRA=0.967742;EPP=16.0391;EPPR=341.76;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.8718;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.99359;PAO=0;PQA=0;PQR=0;PRO=0;QA=235;QR=5283;RO=156;RPL=0;RPP=16.0391;RPPR=341.76;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=156;SRP=341.76;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:53:51,0:51:1738:0:0:0,-15.3525,-156.509 0/0:55:55,0:55:1861:0:0:0,-16.5566,-167.732 0/1:40:34,6:34:1149:6:235:-9.47698,0,-91.6475 0/0:16:16,0:16:535:0:0:0,-4.81648,-48.4566 dDocent_Contig_8536 36 . C A 233.869 . AB=0.2;ABP=57.7314;AC=2;AF=0.25;AN=8;AO=15;CIGAR=1X;DP=151;DPB=151;DPRA=0.465608;EPP=35.5824;EPPR=296.159;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=564;QR=5372;RO=135;RPL=0;RPP=35.5824;RPPR=296.159;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=135;SRP=296.159;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:63:62,0:62:2467:0:0:0,-18.6639,-221.83 0/1:40:34,6:34:1358:6:208:-7.00984,0,-110.433 0/1:30:22,8:22:873:8:316:-19.775,0,-69.8411 0/0:18:17,1:17:674:1:40:0,-1.42286,-56.9947 dDocent_Contig_8537 199 . C A 113.884 . AB=0.214286;ABP=22.8638;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=68;DPB=68;DPRA=1.4;EPP=16.0391;EPPR=135.47;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=233;QR=2313;RO=61;RPL=6;RPP=16.0391;RPPR=135.47;RPR=0;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=135.47;SRR=61;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:22,6:22:841:6:233:-12.9112,0,-67.5804 ./.:.:.:.:.:.:.:. 0/0:23:22,0:22:834:0:0:0,-6.62266,-75.1246 0/0:17:17,0:17:638:0:0:0,-5.11751,-57.7483 dDocent_Contig_8538 52 . G A 79.4092 . AB=0.222222;ABP=15.074;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=91;DPB=91;DPRA=0.739726;EPP=11.6962;EPPR=191.928;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=163;QR=3386;RO=87;RPL=4;RPP=11.6962;RPPR=191.928;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=87;SRP=191.928;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:41:41,0:41:1574:0:0:0,-12.3422,-141.913 0/1:18:14,4:14:549:4:163:-9.63989,0,-44.3317 0/0:22:22,0:22:866:0:0:0,-6.62266,-78.2504 0/0:10:10,0:10:397:0:0:0,-3.0103,-36.087 dDocent_Contig_8539 9 . T C 1139.46 . AB=0.15;ABP=24.2907;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1M1D2M1X12M;DP=172;DPB=170.412;DPRA=0;EPP=9.52472;EPPR=124.613;GTI=0;LEN=1;MEANALT=6;MQM=60;MQMR=60;NS=4;NUMALT=6;ODDS=0;PAIRED=0;PAIREDR=0.714286;PAO=13.6667;PQA=231.5;PQR=231.5;PRO=13.6667;QA=115;QR=2190;RO=56;RPL=0;RPP=9.52472;RPPR=124.613;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:73:24,0,14,0,1,16,5:24:942:0,14,0,1,16,5:0,490,0,38,602,203:-42.0976,-49.3223,-126.801,-9.47572,-86.9516,-82.7372,-49.3223,-126.801,-86.9516,-126.801,-46.2058,-123.685,-83.8352,-123.685,-123.384,0,-77.4803,-37.6338,-77.4803,-74.3639,-72.6638,-32.5767,-110.057,-70.2077,-110.057,-106.941,-60.7358,-108.552 0|0:42:10,0,5,6,0,15,0:10:390:0,5,6,0,15,0:0,181,179,0,564,0:-42.6199,-45.6302,-77.6877,-30.8588,-62.9153,-61.4101,-31.3554,-63.4076,-48.6381,-61.6014,-45.6302,-77.6877,-62.9153,-63.4076,-77.6877,0,-32.0541,-17.2856,-17.7866,-32.0541,-27.5386,-45.6302,-77.6877,-62.9153,-63.4076,-77.6877,-32.0541,-77.6877 0|0:37:12,0,6,0,2,11,0:12:475:0,6,0,2,11,0:0,211,0,78,422,0:-30.1219,-33.7343,-72.8343,-16.5729,-55.6706,-53.8644,-33.7343,-72.8343,-55.6706,-72.8343,-27.3216,-66.4223,-49.259,-66.4223,-65.8202,0,-39.1005,-21.9416,-39.1005,-32.6887,-35.7892,-33.7343,-72.8343,-55.6706,-72.8343,-66.4223,-39.1005,-72.8343 0|1:20:10,3,0,0,0,3,0:10:383:3,0,0,0,3,0:115,0,0,0,115,0:-6.42699,0,-30.5245,-9.43729,-31.4276,-40.8662,-9.43729,-31.4276,-40.8662,-40.8662,-9.43729,-31.4276,-40.8662,-40.8662,-40.8662,-0.106081,-22.0943,-31.5327,-31.5327,-31.5327,-30.6296,-9.43729,-31.4276,-40.8662,-40.8662,-40.8662,-31.5327,-40.8662 dDocent_Contig_8540 127 . T A 79.9314 . AB=0.294118;ABP=9.26925;AC=2;AF=0.25;AN=8;AO=5;CIGAR=1X;DP=75;DPB=75;DPRA=0.293103;EPP=13.8677;EPPR=155.013;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=55.7429;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.914286;PAO=0;PQA=0;PQR=0;PRO=0;QA=168;QR=2366;RO=70;RPL=0;RPP=13.8677;RPPR=155.013;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=155.013;SRR=70;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:28:28,0:28:957:0:0:0,-8.42884,-83.3552 0/0:30:30,0:30:997:0:0:0,-9.0309,-84.7932 0/1:9:5,4:5:169:4:134:-9.68161,0,-8.1413 0/1:8:7,1:7:243:1:34:-0.990671,0,-19.8006 dDocent_Contig_8541 67 . A C 504.828 . AB=0.239583;ABP=59.5591;AC=2;AF=0.25;AN=8;AO=23;CIGAR=1X;DP=168;DPB=168;DPRA=1.33333;EPP=52.9542;EPPR=317.874;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=912;QR=5613;RO=145;RPL=23;RPP=52.9542;RPPR=317.874;RPR=0;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=145;SRP=317.874;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:62:62,0:62:2334:0:0:0,-18.6639,-210.247 0/1:53:44,9:44:1729:9:351:-15.9917,0,-139.884 0/1:43:29,14:29:1150:14:561:-37.889,0,-90.8427 0/0:10:10,0:10:400:0:0:0,-3.0103,-36.3599 dDocent_Contig_8542 26 . G A 1395.61 . AB=0.459459;ABP=4.59489;AC=4;AF=0.5;AN=8;AO=51;CIGAR=1X;DP=111;DPB=111;DPRA=0;EPP=113.755;EPPR=133.299;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1989;QR=2398;RO=60;RPL=0;RPP=113.755;RPPR=133.299;RPR=51;RUN=1;SAF=51;SAP=113.755;SAR=0;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:42:28,14:28:1102:14:528:-35.2034,0,-86.8177 0/1:33:21,12:21:851:12:469:-32.6179,0,-66.9664 0/1:24:6,18:6:245:18:709:-56.9068,0,-15.2048 0/1:12:5,7:5:200:7:283:-22.231,0,-14.7667 dDocent_Contig_8543 25 . T A 288.585 . AB=0.184783;ABP=82.4107;AC=3;AF=0.375;AN=8;AO=17;CIGAR=1X;DP=144;DPB=144;DPRA=0.589744;EPP=39.9253;EPPR=276.616;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=677;QR=5054;RO=126;RPL=0;RPP=39.9253;RPPR=276.616;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=126;SRP=276.616;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:52:52,0:52:2089:0:0:0,-15.6536,-188.192 0/1:37:28,8:28:1127:8:318:-17.7412,0,-90.4661 0/1:33:28,5:28:1108:5:198:-8.26301,0,-90.0696 0/1:22:18,4:18:730:4:161:-8.25224,0,-59.4011 dDocent_Contig_8545 18 . T C 58.9276 . AB=0.142857;ABP=57.2971;AC=2;AF=0.25;AN=8;AO=7;CIGAR=1X;DP=88;DPB=88;DPRA=1.25641;EPP=18.2106;EPPR=178.9;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.962963;PAO=0;PQA=0;PQR=0;PRO=0;QA=259;QR=3230;RO=81;RPL=0;RPP=18.2106;RPPR=178.9;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=81;SRP=178.9;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:9:9,0:9:366:0:0:0,-2.70927,-33.3052 0/1:36:31,5:31:1238:5:200:-7.54195,0,-100.86 0/0:30:30,0:30:1185:0:0:0,-9.0309,-106.926 0/1:13:11,2:11:441:2:59:-1.68642,0,-36.1327 dDocent_Contig_8546 124 . G A 549.198 . AB=0.345679;ABP=19.7655;AC=3;AF=0.375;AN=8;AO=29;CIGAR=1X;DP=91;DPB=91;DPRA=0;EPP=65.983;EPPR=137.642;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=938;QR=2094;RO=62;RPL=0;RPP=65.983;RPPR=137.642;RPR=29;RUN=1;SAF=0;SAP=65.983;SAR=29;SRF=0;SRP=137.642;SRR=62;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:18,2:18:596:2:66:-0.247756,0,-47.9317 0/1:37:29,8:29:1004:8:260:-12.5807,0,-79.5344 0/1:24:6,18:6:199:18:585:-45.7346,0,-11.0106 0/0:10:9,1:9:295:1:27:0,-0.310517,-24.1688 dDocent_Contig_8547 88 . T G 134.836 . AB=0.180328;ABP=57.1547;AC=2;AF=0.25;AN=8;AO=11;CIGAR=1X;DP=77;DPB=77;DPRA=3.8125;EPP=26.8965;EPPR=146.327;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=384;QR=2341;RO=66;RPL=11;RPP=26.8965;RPPR=146.327;RPR=0;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=66;SRP=146.327;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:23,5:23:800:5:174:-7.57311,0,-63.8865 0/1:33:27,6:27:965:6:210:-9.3084,0,-77.2321 0/0:10:10,0:10:363:0:0:0,-3.0103,-33.0161 0/0:6:6,0:6:213:0:0:0,-1.80618,-19.5158 dDocent_Contig_8548 76 . A G 464.035 . AB=0.230088;ABP=74.5152;AC=3;AF=0.375;AN=8;AO=26;CIGAR=1X;DP=119;DPB=119;DPRA=6.27778;EPP=59.4686;EPPR=204.957;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.846154;PAIREDR=0.989247;PAO=0;PQA=0;PQR=0;PRO=0;QA=942;QR=3388;RO=93;RPL=26;RPP=59.4686;RPPR=204.957;RPR=0;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=93;SRP=204.957;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:37:29,8:29:1067:8:294:-15.6743,0,-85.2052 0/1:41:34,7:34:1228:7:246:-10.1379,0,-98.4732 0/1:35:24,11:24:877:11:402:-25.9893,0,-68.7148 0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7896 dDocent_Contig_8550 98 . N T 65.5375 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=69;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:69:-6.55266,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_8551 107 . N T 782.629 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=25;CIGAR=1X;DP=25;DPB=25;DPRA=0;EPP=57.2971;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=0.84;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=847;QR=0;RO=0;RPL=0;RPP=57.2971;RPPR=0;RPR=25;RUN=1;SAF=0;SAP=57.2971;SAR=25;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:11:0,11:0:0:11:365:-33.1712,-3.31133,0 1/1:2:0,2:0:0:2:69:-6.55266,-0.60206,0 1/1:9:0,9:0:0:9:312:-28.416,-2.70927,0 1/1:3:0,3:0:0:3:101:-9.42373,-0.90309,0 dDocent_Contig_8552 7 . C T 716.633 . AB=0.23494;ABP=104.311;AC=3;AF=0.375;AN=8;AO=41;CIGAR=2X1M1X;DP=185;DPB=185;DPRA=0;EPP=92.0407;EPPR=313.531;GTI=0;LEN=1;MEANALT=1.25;MQM=52.878;MQMR=59.0909;NS=4;NUMALT=1;ODDS=0;PAIRED=0.829268;PAIREDR=0.888112;PAO=0;PQA=0;PQR=0;PRO=0;QA=1582;QR=5421;RO=143;RPL=0;RPP=92.0407;RPPR=313.531;RPR=41;RUN=1;SAF=41;SAP=92.0407;SAR=0;SRF=143;SRP=313.531;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:54:40,14:40:1515:14:537:-26.2103,0,-120.371 0|1:50:37,12:37:1414:12:466:-25.7181,0,-112.613 0|1:62:49,13:49:1848:13:501:-25.1319,0,-147.573 0|0:19:17,2:17:644:2:78:0,-0.0292701,-52.6053 dDocent_Contig_8553 35 . T G 1456.57 . AB=0.653333;ABP=18.3264;AC=4;AF=0.5;AN=8;AO=49;CIGAR=1X;DP=75;DPB=75;DPRA=0;EPP=109.412;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1936;QR=1043;RO=26;RPL=0;RPP=109.412;RPPR=59.4686;RPR=49;RUN=1;SAF=49;SAP=109.412;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:8,13:8:323:13:503:-39.2899,0,-23.117 0/1:22:10,12:10:394:12:476:-36.5678,0,-29.1933 0/1:10:2,8:2:82:8:322:-26.338,0,-4.76938 0/1:22:6,16:6:244:16:635:-50.8586,0,-15.7162 dDocent_Contig_8554 107 . N A 201.413 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=6;CIGAR=1X;DP=6;DPB=6;DPRA=0;EPP=16.0391;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=207;QR=0;RO=0;RPL=0;RPP=16.0391;RPPR=0;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1:0,1:0:0:1:35:-3.49863,-0.30103,0 1/1:2:0,2:0:0:2:70:-6.6474,-0.60206,0 1/1:3:0,3:0:0:3:102:-9.5168,-0.90309,0 ./.:.:.:.:.:.:.:. dDocent_Contig_8555 51 . A G 49.2723 . AB=0.230769;ABP=11.1951;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=68;DPB=68;DPRA=4.2;EPP=18.2106;EPPR=135.47;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=252;QR=2293;RO=61;RPL=7;RPP=18.2106;RPPR=135.47;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=61;SRP=135.47;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5,0:5:193:0:0:0,-1.50515,-17.7412 0/0:26:24,2:24:896:2:66:0,-1.56025,-74.6889 0/0:24:22,2:22:846:2:73:0,-0.294018,-69.5316 0/1:13:10,3:10:358:3:113:-6.62558,0,-28.6371 dDocent_Contig_8556 13 . G C 111.435 . AB=0.263158;ABP=12.2676;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=63;DPB=63;DPRA=1.29545;EPP=13.8677;EPPR=128.956;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.982759;PAO=0;PQA=0;PQR=0;PRO=0;QA=202;QR=2223;RO=58;RPL=0;RPP=13.8677;RPPR=128.956;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:20:20,0:20:770:0:0:0,-6.0206,-69.6245 0/1:19:14,5:14:548:5:202:-12.8425,0,-43.9425 0/0:15:15,0:15:564:0:0:0,-4.51545,-51.0961 0/0:9:9,0:9:341:0:0:0,-2.70927,-31.0439 dDocent_Contig_8558 32 . A G 723.61 . AB=0.397059;ABP=9.26925;AC=4;AF=0.5;AN=8;AO=27;CIGAR=1X;DP=68;DPB=68;DPRA=0;EPP=61.6401;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.97561;PAO=0;PQA=0;PQR=0;PRO=0;QA=1097;QR=1636;RO=41;RPL=0;RPP=61.6401;RPPR=92.0407;RPR=27;RUN=1;SAF=0;SAP=61.6401;SAR=27;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:15,5:15:603:5:204:-12.7234,0,-48.5872 0/1:9:2,7:2:81:7:282:-23.0431,0,-4.97646 0/1:23:13,10:13:512:10:409:-30.2469,0,-39.5003 0/1:16:11,5:11:440:5:202:-13.7454,0,-35.1381 dDocent_Contig_8559 18 . G A 120.712 . 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AB=0.216216;ABP=54.7735;AC=3;AF=0.375;AN=8;AO=20;CIGAR=1X;DP=129;DPB=129;DPRA=0;EPP=46.4397;EPPR=239.701;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=800;QR=4294;RO=109;RPL=20;RPP=46.4397;RPPR=239.701;RPR=0;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=109;SRP=239.701;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:55:51,4:51:2001:4:158:0,-1.95638,-165.694 0/1:46:35,11:35:1374:11:443:-26.3789,0,-110.077 0/1:22:20,2:20:798:2:81:-1.06307,0,-65.5175 0/1:6:3,3:3:121:3:118:-9.19654,0,-9.47381 dDocent_Contig_8561 73 . A G 216.856 . 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AB=0.358491;ABP=21.4473;AC=3;AF=0.375;AN=8;AO=39;CIGAR=1X;DP=121;DPB=121;DPRA=0;EPP=87.6977;EPPR=181.071;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.987805;PAO=0;PQA=0;PQR=0;PRO=0;QA=1587;QR=3285;RO=82;RPL=0;RPP=87.6977;RPPR=181.071;RPR=39;RUN=1;SAF=39;SAP=87.6977;SAR=0;SRF=82;SRP=181.071;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:49:23,26:23:929:26:1064:-81.2931,0,-69.1623 0/1:48:38,10:38:1524:10:407:-22.5412,0,-122.946 0/1:9:7,2:7:280:2:75:-4.40953,0,-22.8625 0/0:15:14,1:14:552:1:41:0,-0.420883,-45.9266 dDocent_Contig_8563 73 . G A 297.251 . 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T G 258.093 . AB=0.235294;ABP=34.0496;AC=1;AF=0.125;AN=8;AO=12;CIGAR=1X;DP=135;DPB=135;DPRA=1.82143;EPP=29.068;EPPR=270.101;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.187;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=469;QR=4797;RO=123;RPL=0;RPP=29.068;RPPR=270.101;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=123;SRP=270.101;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:51:39,12:39:1542:12:469:-27.2072,0,-123.678 0/0:52:52,0:52:1995:0:0:0,-15.6536,-179.761 0/0:14:14,0:14:541:0:0:0,-4.21442,-48.366 0/0:18:18,0:18:719:0:0:0,-5.41854,-63.1586 dDocent_Contig_8567 18 . T G 92.8186 . AB=0.333333;ABP=5.9056;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=48;DPB=48;DPRA=1.28571;EPP=13.8677;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=59;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.2;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=199;QR=1675;RO=43;RPL=0;RPP=13.8677;RPPR=96.3836;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:15:14,1:14:540:1:41:0,-0.420883,-44.8439 0/0:17:17,0:17:655:0:0:0,-5.11751,-59.2668 0/1:12:8,4:8:319:4:158:-10.9804,0,-25.4637 0/0:4:4,0:4:161:0:0:0,-1.20412,-14.8755 dDocent_Contig_8568 63 . T A 725.652 . AB=0.442623;ABP=4.7546;AC=4;AF=0.5;AN=8;AO=27;CIGAR=1X;DP=61;DPB=61;DPRA=0;EPP=61.6401;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1076;QR=1350;RO=34;RPL=27;RPP=61.6401;RPPR=76.8404;RPR=0;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:14,9:14:561:9:355:-25.3879,0,-43.9055 0/1:16:6,10:6:235:10:399:-31.4511,0,-16.7008 0/1:15:10,5:10:396:5:204:-14.2286,0,-31.4821 0/1:7:4,3:4:158:3:118:-8.89551,0,-12.4932 dDocent_Contig_8569 113 . A G 176.031 . AB=0.444444;ABP=3.49285;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=34;DPB=34;DPRA=3.375;EPP=20.3821;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=271;QR=889;RO=26;RPL=0;RPP=20.3821;RPPR=59.4686;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=59.4686;SRR=26;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:3:3,0:3:105:0:0:0,-0.90309,-9.79616 0/1:18:10,8:10:340:8:271:-19.3019,0,-25.5109 0/0:7:7,0:7:240:0:0:0,-2.10721,-21.9351 0/0:6:6,0:6:204:0:0:0,-1.80618,-18.6934 dDocent_Contig_8570 141 . G T 240.921 . AB=0.416667;ABP=4.45795;AC=1;AF=0.125;AN=8;AO=11;CIGAR=1X;DP=45;DPB=45;DPRA=2.75;EPP=26.8965;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=383;QR=1233;RO=34;RPL=0;RPP=26.8965;RPPR=76.8404;RPR=11;RUN=1;SAF=0;SAP=26.8965;SAR=11;SRF=0;SRP=76.8404;SRR=34;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:7:7,0:7:257:0:0:0,-2.10721,-23.484 0/0:5:5,0:5:184:0:0:0,-1.50515,-16.9184 0/1:24:14,10:14:505:10:363:-25.7908,0,-38.5613 0/0:9:8,1:8:287:1:20:0,-0.709313,-24.176 dDocent_Contig_8571 21 . G A 89.2823 . AB=0.157895;ABP=41.6397;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=102;DPB=102;DPRA=1.78125;EPP=16.0391;EPPR=211.472;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=241;QR=3822;RO=96;RPL=0;RPP=16.0391;RPPR=211.472;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=96;SRP=211.472;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:38:38,0:38:1519:0:0:0,-11.4391,-136.957 0/1:38:32,6:32:1276:6:241:-10.6272,0,-103.672 0/0:21:21,0:21:838:0:0:0,-6.32163,-75.7315 0/0:5:5,0:5:189:0:0:0,-1.50515,-17.3712 dDocent_Contig_8572 23 . C T 909.475 . AB=0.0714286;ABP=47.6806;AC=4;AF=0.5;AN=8;AO=2;CIGAR=1X3M2X3M1X;DP=77;DPB=77;DPRA=0;EPP=7.35324;EPPR=89.8692;GTI=0;LEN=1;MEANALT=2;MQM=51;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=78;QR=1579;RO=40;RPL=0;RPP=7.35324;RPPR=89.8692;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:14:9,5,0:9:358:5,0:196,0:-13.7986,0,-28.3692,-16.5079,-29.8743,-45.9886 0|1:28:16,10,2:16:633:10,2:402,78:-28.328,0,-49.0977,-26.8646,-45.8264,-78.3553 0|1:30:14,15,0:14:548:15,0:596,0:-45.0291,0,-40.7388,-49.2435,-45.2542,-94.3044 0|1:5:1,4,0:1:40:4,0:140,0:-11.1559,0,-2.49053,-11.4569,-3.69465,-14.7635 dDocent_Contig_8574 8 . T A 4314.76 . AB=0.211538;ABP=153.343;AC=3;AF=0.375;AN=8;AO=44;CIGAR=1X2M1X2M1X3M;DP=208;DPB=208;DPRA=0;EPP=98.5551;EPPR=72.4974;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1690;QR=1256;RO=32;RPL=0;RPP=98.5551;RPPR=72.4974;RPR=44;RUN=1;SAF=44;SAP=98.5551;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:72:18,7,6,41:18:701:7,6,41:274,238,1611:-127.082,-109.972,-165.476,-112.917,-147.999,-168.722,0,-35.0806,-38.0244,-45.2675 1|0:78:8,19,0,45:8:318:19,0,45:731,0,1751:-175.3,-117.698,-138.162,-177.709,-143.881,-203.892,-33.8201,0,-60.0046,-46.4582 1|0:44:5,14,0,24:5:197:14,0,24:526,0,954:-103.922,-62.3462,-74.3393,-105.427,-78.5537,-121.635,-26.8683,0,-43.081,-35.8563 1|0:14:1,4,0,7:1:40:4,0,7:159,0,280:-32.5698,-19.7791,-21.8705,-32.8708,-23.0746,-36.1662,-9.80101,0,-13.0973,-10.9901 dDocent_Contig_8575 180 . G T 202.893 . AB=0.272727;ABP=17.8158;AC=2;AF=0.25;AN=8;AO=9;CIGAR=1X;DP=51;DPB=51;DPRA=1.83333;EPP=22.5536;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=365;QR=1670;RO=42;RPL=9;RPP=22.5536;RPPR=94.2121;RPR=0;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=94.2121;SRR=42;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:7,3:7:278:3:122:-8.36219,0,-22.3789 0/1:23:17,6:17:676:6:243:-15.3245,0,-54.2439 0/0:17:17,0:17:675:0:0:0,-5.11751,-61.0771 0/0:1:1,0:1:41:0:0:0,-0.30103,-4.09457 dDocent_Contig_8576 53 . C T 1170.48 . AB=0.181208;ABP=134.537;AC=1;AF=0.125;AN=8;AO=27;CIGAR=1X2M1X;DP=149;DPB=149;DPRA=0;EPP=61.6401;EPPR=176.728;GTI=0;LEN=1;MEANALT=2.25;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=906;QR=2674;RO=80;RPL=27;RPP=61.6401;RPPR=176.728;RPR=0;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=80;SRP=176.728;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:54:21,2,6,25:21:693:2,6,25:61,200,865:-63.9881,-65.425,-120.846,-54.1233,-105.26,-108.34,0,-51.1459,-39.8418,-48.5054 0|0:31:24,3,0,4:24:793:3,0,4:105,0,148:-4.89473,-3.58478,-66.7687,-12.1194,-67.6718,-76.2164,0,-55.5581,-64.1035,-62.8994 0|0:23:13,4,0,6:13:440:4,0,6:131,0,206:-12.8234,-6.16112,-40.6269,-16.7368,-41.831,-52.4109,0,-25.1022,-35.6816,-33.8754 0|1:41:22,18,0,1:22:748:18,0,1:609,0,35:-42.7394,0,-55.2468,-49.3621,-60.6653,-110.038,-46.5137,-57.8172,-107.19,-106.888 dDocent_Contig_8577 50 . A G 85.8626 . AB=0.206897;ABP=24.6501;AC=2;AF=0.25;AN=8;AO=6;CIGAR=1X1M8D1M;DP=38;DPB=33.6364;DPRA=3.22222;EPP=16.0391;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=223;QR=1215;RO=31;RPL=6;RPP=16.0391;RPPR=70.3259;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:7:5,2:5:196:2:77:-5.20162,0,-15.908 0|1:22:17,4:17:667:4:146:-6.78222,0,-53.6413 0|0:2:2,0:2:80:0:0:0,-0.60206,-7.59179 0|0:7:7,0:7:272:0:0:0,-2.10721,-24.8459 dDocent_Contig_8578 29 . T C 3049.62 . AB=0.380137;ABP=39.4494;AC=4;AF=0.5;AN=8;AO=111;CIGAR=1X;DP=292;DPB=292;DPRA=0;EPP=244.044;EPPR=380.846;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.913793;PAO=0;PQA=0;PQR=0;PRO=0;QA=4420;QR=6952;RO=174;RPL=0;RPP=244.044;RPPR=380.846;RPR=111;RUN=1;SAF=111;SAP=244.044;SAR=0;SRF=174;SRP=380.846;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:97:72,21:72:2873:21:843:-47.8069,0,-230.291 0/1:104:56,48:56:2268:48:1906:-140.436,0,-172.966 0/1:68:36,29:36:1425:29:1149:-83.7146,0,-108.537 0/1:23:10,13:10:386:13:522:-40.4021,0,-28.1678 dDocent_Contig_8579 7 . C A 173.682 . AB=0.171875;ABP=62.8615;AC=1;AF=0.125;AN=8;AO=11;CIGAR=1X;DP=331;DPB=331;DPRA=0.719101;EPP=26.8965;EPPR=697.881;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.9969;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.99375;PAO=0;PQA=0;PQR=0;PRO=0;QA=422;QR=12293;RO=320;RPL=0;RPP=26.8965;RPPR=697.881;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=320;SRP=697.881;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:140:140,0:140:5377:0:0:0,-42.1442,-483.92 0/0:88:88,0:88:3395:0:0:0,-26.4906,-305.684 0/1:64:53,11:53:2024:11:422:-19.0672,0,-163.131 0/0:39:39,0:39:1497:0:0:0,-11.7402,-135.005 dDocent_Contig_8580 209 . N G 113.73 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=0;RO=0;RPL=3;RPP=9.52472;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:122:-11.3725,-0.90309,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_8581 18 . C T 39.8488 . AB=0.1125;ABP=107.35;AC=3;AF=0.375;AN=8;AO=10;CIGAR=1X;DP=103;DPB=103;DPRA=0;EPP=24.725;EPPR=202.786;GTI=0;LEN=1;MEANALT=1.25;MQM=52.5;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=386;QR=3651;RO=92;RPL=0;RPP=24.725;RPPR=202.786;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=92;SRP=202.786;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:33:29,4:29:1131:4:158:-4.59039,0,-92.1324 0/1:43:38,4:38:1504:4:147:-0.658813,0,-122.776 0/0:23:22,1:22:893:1:41:0,-2.85688,-76.6095 0/1:4:3,1:3:123:1:40:-2.76931,0,-10.2607 dDocent_Contig_8582 144 . A G 114.328 . AB=0.272727;ABP=17.8158;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=38;DPB=38;DPRA=3.3;EPP=22.5536;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=270;QR=890;RO=29;RPL=0;RPP=22.5536;RPPR=65.983;RPR=9;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=65.983;SRR=29;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:19,5:19:572:5:158:-7.30754,0,-44.5448 0/1:9:5,4:5:163:4:112:-7.64807,0,-12.2828 0/0:5:5,0:5:155:0:0:0,-1.50515,-14.2561 ./.:.:.:.:.:.:.:. dDocent_Contig_8583 54 . C A 222.109 . AB=0.15534;ABP=109.286;AC=4;AF=0.5;AN=8;AO=16;CIGAR=1X;DP=103;DPB=103;DPRA=0;EPP=37.7539;EPPR=191.928;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=636;QR=3425;RO=87;RPL=16;RPP=37.7539;RPPR=191.928;RPR=0;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=87;SRP=191.928;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:32,4:32:1223:4:156:-3.57787,0,-99.5018 0/1:25:23,2:23:926:2:81:-0.159984,0,-76.1182 0/1:30:23,7:23:914:7:278:-16.359,0,-73.5343 0/1:12:9,3:9:362:3:121:-7.66763,0,-29.3311 dDocent_Contig_8584 11 . C T 409.172 . AB=0.201923;ABP=83.2713;AC=3;AF=0.375;AN=8;AO=25;CIGAR=1X;DP=160;DPB=160;DPRA=0;EPP=57.2971;EPPR=287.538;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.985185;PAO=0;PQA=0;PQR=0;PRO=0;QA=1011;QR=5343;RO=135;RPL=0;RPP=57.2971;RPPR=296.159;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=134;SRP=287.538;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:51:40,11:40:1583:11:444:-24.9633,0,-127.351 0/0:56:52,4:52:2053:4:161:0,-1.98278,-170.079 0/1:43:36,7:36:1427:7:284:-12.9897,0,-115.741 0/1:10:7,3:7:280:3:122:-8.36219,0,-22.5597 dDocent_Contig_8585 12 . G A 779.085 . AB=0.37037;ABP=14.8328;AC=3;AF=0.375;AN=8;AO=30;CIGAR=1X;DP=119;DPB=119;DPRA=0.710526;EPP=68.1545;EPPR=196.271;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1185;QR=3575;RO=89;RPL=0;RPP=68.1545;RPPR=196.271;RPR=30;RUN=1;SAF=30;SAP=68.1545;SAR=0;SRF=89;SRP=196.271;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:38:38,0:38:1530:0:0:0,-11.4391,-137.94 0/1:31:17,14:17:696:14:567:-42.0404,0,-53.6348 0/1:17:14,3:14:571:3:110:-5.14142,0,-46.6144 0/1:33:20,13:20:778:13:508:-36.1246,0,-60.3977 dDocent_Contig_8586 10 . C T 361.255 . AB=0.172414;ABP=30.0414;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X1M1X3M1X;DP=88;DPB=88.2857;DPRA=2.07143;EPP=13.8677;EPPR=128.956;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=0.896552;PAO=0;PQA=0;PQR=0;PRO=0;QA=197;QR=2298;RO=58;RPL=0;RPP=13.8677;RPPR=128.956;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:33:22,0,2,9:22:867:0,2,9:0,80,360:-23.0326,-29.6552,-100.98,-23.0958,-94.4202,-93.8182,0,-71.3247,-64.7647,-68.6155 0|1:29:16,5,4,4:16:642:5,4,4:197,161,160:-11.3889,0,-51.3943,-2.99953,-39.6949,-54.6972,-3.02521,-39.7204,-42.722,-54.7227 0|0:12:8,0,0,3:8:308:0,0,3:0,0,116:-7.10129,-9.50953,-34.7897,-9.50953,-34.7897,-34.7897,0,-25.2631,-25.2631,-24.36 0|0:14:12,0,0,1:12:481:0,0,1:0,0,39:0,-3.61236,-43.281,-3.61236,-43.281,-43.281,-0.371619,-40.0755,-40.0755,-39.7744 dDocent_Contig_8587 14 . C T 35.9291 . AB=0.12;ABP=34.3664;AC=1;AF=0.125;AN=8;AO=6;CIGAR=3M1X2M;DP=194;DPB=185.333;DPRA=0;EPP=16.0391;EPPR=376.504;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=1.38778e-17;PAIRED=1;PAIREDR=0.959302;PAO=0;PQA=0;PQR=0;PRO=0;QA=238;QR=6844;RO=172;RPL=0;RPP=16.0391;RPPR=376.504;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=172;SRP=376.504;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:78:70,4,3,1:70:2775:4,3,1:155,117,41:0,-8.60096,-235.813,-11.4548,-227.401,-238.976,-17.6849,-233.633,-236.495,-245.809 0|0:54:49,5,0,0:49:1964:5,0,0:187,0,0:-0.805516,0,-160.707,-15.556,-162.212,-177.394,-15.556,-162.212,-177.394,-177.394 0|0:37:31,4,0,2:31:1231:4,0,2:156,0,81:-3.22118,0,-100.128,-12.5531,-101.332,-113.898,-5.86663,-94.6527,-107.219,-106.617 0|1:25:22,0,3,0:22:874:0,3,0:0,121,0:-3.75445,-10.3771,-82.3247,0,-72.3497,-71.4466,-10.3771,-82.3247,-72.3497,-82.3247 dDocent_Contig_8588 19 . C T 509.905 . AB=0.2875;ABP=34.3881;AC=4;AF=0.5;AN=8;AO=23;CIGAR=1M2I4M1I1M1X;DP=80;DPB=89.8571;DPRA=0;EPP=52.9542;EPPR=124.613;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=901;QR=2223;RO=56;RPL=0;RPP=52.9542;RPPR=124.613;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:28:21,7:21:838:7:276:-16.7795,0,-67.3064 0|1:28:20,7:20:788:7:279:-16.9448,0,-62.7047 0|1:17:11,6:11:437:6:224:-15.3989,0,-34.5663 0|1:7:4,3:4:160:3:122:-9.26528,0,-12.6762 dDocent_Contig_8589 173 . A T 117.296 . AB=0.151515;ABP=72.629;AC=3;AF=0.375;AN=8;AO=10;CIGAR=1X;DP=75;DPB=75;DPRA=2.44444;EPP=24.725;EPPR=141.985;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=390;QR=2225;RO=64;RPL=10;RPP=24.725;RPPR=141.985;RPR=0;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=141.985;SRR=64;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:27,4:27:932:4:148:-4.34901,0,-74.848 0/0:9:9,0:9:316:0:0:0,-2.70927,-28.7779 0/1:21:18,2:18:619:2:80:-1.38446,0,-49.9145 0/1:14:10,4:10:358:4:162:-10.7525,0,-28.3457 dDocent_Contig_8590 20 . T C 1316.73 . AB=0.413793;ABP=10.4981;AC=4;AF=0.5;AN=8;AO=48;CIGAR=1X;DP=116;DPB=116;DPRA=0;EPP=107.241;EPPR=150.67;GTI=0;LEN=1;MEANALT=1;MQM=52.0625;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1931;QR=2694;RO=68;RPL=0;RPP=107.241;RPPR=150.67;RPR=48;RUN=1;SAF=48;SAP=107.241;SAR=0;SRF=68;SRP=150.67;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:38:21,17:21:813:17:683:-49.8004,0,-62.0383 0/1:35:24,11:24:956:11:445:-29.6626,0,-75.8068 0/1:28:17,11:17:682:11:441:-31.3754,0,-53.2772 0/1:15:6,9:6:243:9:362:-28.2324,0,-17.7327 dDocent_Contig_8591 26 . T A 1918.3 . AB=0.444444;ABP=7.11197;AC=4;AF=0.5;AN=8;AO=68;CIGAR=1X;DP=153;DPB=153;DPRA=0;EPP=150.67;EPPR=185.414;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2709;QR=3303;RO=84;RPL=0;RPP=150.67;RPPR=185.414;RPR=68;RUN=1;SAF=68;SAP=150.67;SAR=0;SRF=84;SRP=185.414;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:47:39,8:39:1511:8:325:-15.4712,0,-122.08 0/1:59:30,29:30:1208:29:1149:-85.9278,0,-91.2308 0/1:37:11,26:11:424:26:1036:-82.3919,0,-27.3665 0/1:10:4,5:4:160:5:199:-15.4374,0,-11.9222 dDocent_Contig_8592 19 . C G 145.067 . AB=0.222222;ABP=27.1378;AC=2;AF=0.25;AN=8;AO=11;CIGAR=1X;DP=139;DPB=139;DPRA=0.673913;EPP=26.8965;EPPR=280.959;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.818182;PAIREDR=0.914062;PAO=0;PQA=0;PQR=0;PRO=0;QA=433;QR=5065;RO=128;RPL=0;RPP=26.8965;RPPR=280.959;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=128;SRP=280.959;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:57:54,3:54:2166:3:122:0,-5.78622,-183.741 0/0:46:46,0:46:1783:0:0:0,-13.8474,-160.687 0/1:18:13,5:13:528:5:188:-11.8584,0,-42.4478 0/1:18:15,3:15:588:3:123:-6.04625,0,-47.8279 dDocent_Contig_8593 90 . G A 160.064 . AB=0.333333;ABP=8.80089;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=51;DPB=51;DPRA=2.66667;EPP=20.3821;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=270;QR=1464;RO=43;RPL=8;RPP=20.3821;RPPR=96.3836;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:16,8:16:546:8:270:-17.4043,0,-42.2391 0/0:11:11,0:11:370:0:0:0,-3.31133,-33.6239 0/0:12:12,0:12:408:0:0:0,-3.61236,-37.0475 0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9449 dDocent_Contig_8594 76 . C T 248.825 . AB=0.344828;ABP=9.07545;AC=2;AF=0.25;AN=8;AO=10;CIGAR=1X;DP=123;DPB=123;DPRA=0.308511;EPP=24.725;EPPR=246.215;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=402;QR=4490;RO=112;RPL=10;RPP=24.725;RPPR=246.215;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=112;SRP=246.215;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:61:60,0:60:2401:0:0:0,-18.0618,-216.157 0/0:33:33,0:33:1325:0:0:0,-9.93399,-119.508 0/1:21:12,9:12:487:9:361:-26.5317,0,-37.8596 0/1:8:7,1:7:277:1:41:-1.68633,0,-22.8906 dDocent_Contig_8595 14 . G A 65.4587 . AB=0.172414;ABP=30.0414;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=70;DPB=70;DPRA=1.44444;EPP=16.0391;EPPR=141.985;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=226;QR=2556;RO=64;RPL=0;RPP=16.0391;RPPR=141.985;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=64;SRP=141.985;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:18:18,0:18:710:0:0:0,-5.41854,-64.2274 0/1:29:24,5:24:967:5:186:-8.36978,0,-78.5998 0/0:23:22,1:22:879:1:40:0,-2.92801,-75.4196 ./.:.:.:.:.:.:.:. dDocent_Contig_8597 95 . C T 152.285 . AB=0.234043;ABP=31.8863;AC=2;AF=0.25;AN=8;AO=12;CIGAR=1X;DP=60;DPB=60;DPRA=19.6667;EPP=29.068;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=391;QR=1581;RO=48;RPL=12;RPP=29.068;RPPR=107.241;RPR=0;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:12:11,1:11:366:1:34:0,-0.213449,-29.8634 0/1:14:11,3:11:342:3:100:-5.11611,0,-26.8672 0/1:33:25,8:25:838:8:257:-13.509,0,-65.797 0/0:1:1,0:1:35:0:0:0,-0.30103,-3.49863 dDocent_Contig_8598 15 . A T 31.2047 . AB=0.15;ABP=24.2907;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=47;DPB=47;DPRA=2.22222;EPP=9.52472;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.931818;PAO=0;PQA=0;PQR=0;PRO=0;QA=113;QR=1712;RO=44;RPL=0;RPP=9.52472;RPPR=98.5551;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:17,3:17:666:3:113:-4.51781,0,-54.2509 0/0:13:13,0:13:502:0:0:0,-3.91339,-45.5169 0/0:12:12,0:12:465:0:0:0,-3.61236,-42.1897 0/0:2:2,0:2:79:0:0:0,-0.60206,-7.49724 dDocent_Contig_8599 21 . T C 4877.94 . AB=0.268617;ABP=352.71;AC=4;AF=0.5;AN=8;AO=202;CIGAR=1X;DP=752;DPB=752;DPRA=0;EPP=441.648;EPPR=1197.32;GTI=0;LEN=1;MEANALT=1;MQM=59.3317;MQMR=59.0018;NS=4;NUMALT=1;ODDS=0;PAIRED=0.980198;PAIREDR=0.981818;PAO=0;PQA=0;PQR=0;PRO=0;QA=8052;QR=21307;RO=550;RPL=0;RPP=441.648;RPPR=1197.32;RPR=202;RUN=1;SAF=202;SAP=441.648;SAR=0;SRF=550;SRP=1197.32;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:200:107,93:107:4199:93:3679:-270.897,0,-314.717 0/1:185:158,27:158:6195:27:1095:-43.1429,0,-497.289 0/1:244:196,48:196:7543:48:1907:-98.3607,0,-602.719 0/1:123:89,34:89:3370:34:1371:-82.7916,0,-266.254 dDocent_Contig_8601 74 . T C 1686.59 . AB=0.318182;ABP=72.4974;AC=4;AF=0.5;AN=8;AO=77;CIGAR=1X;DP=242;DPB=242;DPRA=0;EPP=170.214;EPPR=361.303;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2751;QR=5426;RO=165;RPL=77;RPP=170.214;RPPR=361.303;RPR=0;RUN=1;SAF=77;SAP=170.214;SAR=0;SRF=165;SRP=361.303;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:95:63,32:63:2048:32:1141:-74.3964,0,-155.98 0/1:91:65,26:65:2150:26:943:-57.7943,0,-166.368 0/1:32:16,16:16:526:16:560:-41.0909,0,-38.0191 0/1:24:21,3:21:702:3:107:-2.75709,0,-56.2668 dDocent_Contig_8602 16 . G A 920.911 . AB=0.5;ABP=3.0103;AC=4;AF=0.5;AN=8;AO=34;CIGAR=1X;DP=68;DPB=68;DPRA=0;EPP=76.8404;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.617647;PAIREDR=0.823529;PAO=0;PQA=0;PQR=0;PRO=0;QA=1317;QR=1362;RO=34;RPL=0;RPP=76.8404;RPPR=76.8404;RPR=34;RUN=1;SAF=34;SAP=76.8404;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:8,2:8:326:2:79:-4.48694,0,-26.6994 0/1:31:15,16:15:590:16:639:-48.5133,0,-44.1046 0/1:12:5,7:5:203:7:280:-21.9583,0,-15.0407 0/1:15:6,9:6:243:9:319:-24.5301,0,-17.7327 dDocent_Contig_8603 209 . N G 149.672 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=7.37776;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=162;QR=0;RO=0;RPL=4;RPP=11.6962;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:4:0,4:0:0:4:162:-14.967,-1.20412,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_8604 77 . A G 152.506 . AB=0.352941;ABP=6.20364;AC=1;AF=0.125;AN=8;AO=10;CIGAR=1X;DP=113;DPB=113;DPRA=3.09091;EPP=24.725;EPPR=226.672;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.980583;PAO=0;PQA=0;PQR=0;PRO=0;QA=396;QR=4033;RO=103;RPL=10;RPP=24.725;RPPR=226.672;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=103;SRP=226.672;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:11,0:11:412:0:0:0,-3.31133,-37.418 0/0:27:25,2:25:978:2:81:0,-0.442076,-80.6334 0/0:58:56,2:56:2214:2:74:0,-10.4349,-192.417 0/1:17:11,6:11:429:6:241:-16.9492,0,-33.8432 dDocent_Contig_8605 7 . C T 217.584 . AB=0.294118;ABP=15.5282;AC=2;AF=0.25;AN=8;AO=11;CIGAR=1X;DP=87;DPB=87;DPRA=1.7381;EPP=26.8965;EPPR=168.042;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=424;QR=2933;RO=76;RPL=0;RPP=26.8965;RPPR=168.042;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=76;SRP=168.042;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:39:38,1:38:1471:1:39:0,-7.84361,-128.769 0/1:18:13,5:13:500:5:194:-12.4143,0,-39.9292 0/1:16:11,5:11:420:5:191:-12.742,0,-33.3359 0/0:14:14,0:14:542:0:0:0,-4.21442,-49.1254 dDocent_Contig_8606 45 . T C 517.462 . AB=0.35;ABP=6.91895;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=2M1X1M;DP=20;DPB=21;DPRA=0;EPP=18.2106;EPPR=0;GTI=0;LEN=1;MEANALT=2.33333;MQM=59.1429;MQMR=0;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=283;QR=0;RO=0;RPL=0;RPP=18.2106;RPPR=0;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:5:0,0,3,2:0:0:0,3,2:0,123,82:-17.3299,-17.3299,-17.3299,-7.17762,-7.17762,-6.27453,-10.5617,-10.5617,0,-9.95964 .:.:.:.:.:.:.:. 0|1:5:0,0,1,4:0:0:0,1,4:0,38,160:-16.6913,-16.6913,-16.6913,-13.5788,-13.5788,-13.2778,-3.49624,-3.49624,0,-2.29212 0|0:10:0,4,5,1:0:0:4,5,1:161,205,41:-23.179,-16.9217,-15.7176,-6.1785,0,-4.67335,-19.8005,-13.5521,-2.76896,-19.4994 dDocent_Contig_8607 149 . G C 226.991 . AB=0.222222;ABP=39.2015;AC=3;AF=0.375;AN=8;AO=12;CIGAR=1X;DP=64;DPB=64;DPRA=1.8;EPP=29.068;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=480;QR=2082;RO=52;RPL=0;RPP=29.068;RPPR=115.927;RPR=12;RUN=1;SAF=0;SAP=29.068;SAR=12;SRF=0;SRP=115.927;SRR=52;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:8,5:8:325:5:197:-14.1915,0,-25.706 0/1:15:12,3:12:477:3:122:-6.85704,0,-38.7651 0/1:26:22,4:22:888:4:161:-7.04849,0,-72.3991 0/0:10:10,0:10:392:0:0:0,-3.0103,-35.6317 dDocent_Contig_8608 8 . T G 656.189 . AB=0.324324;ABP=22.847;AC=2;AF=0.25;AN=8;AO=25;CIGAR=1X1M1X;DP=105;DPB=105;DPRA=0;EPP=57.2971;EPPR=152.842;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.971014;PAO=0;PQA=0;PQR=0;PRO=0;QA=948;QR=2640;RO=69;RPL=0;RPP=57.2971;RPPR=152.842;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=69;SRP=152.842;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:31:30,1,0:30:1155:1,0:39,0:0,-5.43537,-100.351,-9.0309,-100.652,-103.858 0|1:30:17,13,0:17:652:13,0:492,0:-35.5959,0,-49.9854,-40.7134,-53.8988,-94.2318 0|0:26:16,4,6:16:615:4,6:152,246:-15.5058,-7.86816,-57.1348,0,-38.0276,-48.6866 0|1:18:6,7,5:6:218:7,5:265,204:-19.9023,0,-15.6668,-4.86496,-0.922446,-21.151 dDocent_Contig_8610 108 . C A 45.3107 . AB=0.181818;ABP=22.3561;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=85;DPB=85;DPRA=1.04762;EPP=11.6962;EPPR=178.9;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=139;QR=2625;RO=81;RPL=0;RPP=11.6962;RPPR=178.9;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=178.9;SRR=81;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:28:28,0:28:914:0:0:0,-8.42884,-82.5604 0/1:22:18,4:18:606:4:139:-6.23003,0,-48.2361 0/0:20:20,0:20:618:0:0:0,-6.0206,-55.9139 0/0:15:15,0:15:487:0:0:0,-4.51545,-44.1418 dDocent_Contig_8611 13 . G A 921.977 . AB=0.227513;ABP=124.9;AC=4;AF=0.5;AN=8;AO=43;CIGAR=2X;DP=189;DPB=189;DPRA=0;EPP=96.3836;EPPR=320.045;GTI=0;LEN=1;MEANALT=1;MQM=59.9535;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.993151;PAO=0;PQA=0;PQR=0;PRO=0;QA=1723;QR=5861;RO=146;RPL=0;RPP=96.3836;RPPR=320.045;RPR=43;RUN=1;SAF=43;SAP=96.3836;SAR=0;SRF=146;SRP=320.045;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:86:68,18:68:2721:18:717:-38.9611,0,-219.123 0|1:48:37,11:37:1490:11:439:-25.4149,0,-119.894 0|1:42:33,9:33:1323:9:365:-20.5716,0,-106.69 0|1:13:8,5:8:327:5:202:-14.6481,0,-25.8867 dDocent_Contig_8612 12 . A C 1849.28 . AB=0.617647;ABP=15.2727;AC=4;AF=0.5;AN=8;AO=63;CIGAR=3M1X1M;DP=102;DPB=100.8;DPRA=0;EPP=139.813;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1.25;MQM=59.4762;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.984127;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2464;QR=1439;RO=37;RPL=0;RPP=139.813;RPPR=83.3548;RPR=63;RUN=1;SAF=63;SAP=139.813;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:19:7,0,12:7:276:0,12:0,463:-36.0173,-38.1245,-60.8369,0,-23.1022,-19.4898 0|1:31:18,2,11:18:691:2,11:76,444:-31.202,-30.3925,-86.4945,0,-50.4885,-53.4084 0|1:29:7,0,22:7:276:0,22:0,857:-68.7063,-70.8135,-93.5231,0,-23.1023,-16.4797 0|1:23:5,0,18:5:196:0,18:0,700:-56.4002,-57.9053,-74.0237,0,-16.5094,-11.0908 dDocent_Contig_8613 12 . G A 226.46 . AB=0.196721;ABP=51.7438;AC=2;AF=0.25;AN=8;AO=12;CIGAR=1X;DP=97;DPB=97;DPRA=1.69444;EPP=29.068;EPPR=187.585;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=485;QR=3354;RO=85;RPL=0;RPP=29.068;RPPR=187.585;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=85;SRP=187.585;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:25,4:25:983:4:163:-6.32856,0,-80.0351 0/0:12:12,0:12:487:0:0:0,-3.61236,-44.1815 0/1:32:24,8:24:932:8:322:-19.7154,0,-74.5414 0/0:24:24,0:24:952:0:0:0,-7.22472,-85.9769 dDocent_Contig_8614 164 . T C 134.417 . AB=0.315789;ABP=8.61041;AC=2;AF=0.25;AN=8;AO=6;CIGAR=1X;DP=26;DPB=26;DPRA=2.71429;EPP=16.0391;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=242;QR=789;RO=20;RPL=6;RPP=16.0391;RPPR=46.4397;RPR=0;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=46.4397;SRR=20;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:6,4:6:235:4:162:-11.9567,0,-18.5087 0/0:1:1,0:1:41:0:0:0,-0.30103,-4.09457 0/0:6:6,0:6:241:0:0:0,-1.80618,-22.0663 0/1:9:7,2:7:272:2:80:-4.8823,0,-22.132 dDocent_Contig_8616 128 . C A 156.561 . AB=0.25;ABP=33.4109;AC=2;AF=0.25;AN=8;AO=16;CIGAR=1X1M1X;DP=83;DPB=83;DPRA=8.88889;EPP=37.7539;EPPR=148.499;GTI=0;LEN=1;MEANALT=1;MQM=57.875;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=455;QR=2237;RO=67;RPL=0;RPP=37.7539;RPPR=148.499;RPR=16;RUN=1;SAF=0;SAP=37.7539;SAR=16;SRF=0;SRP=148.499;SRR=67;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:39:31,8:31:1005:8:242:-10.3322,0,-79.0044 0|0:24:22,2:22:751:2:62:0,-1.33601,-62.0193 0|1:17:11,6:11:377:6:151:-8.72174,0,-29.1431 0|0:3:3,0:3:104:0:0:0,-0.90309,-9.70309 dDocent_Contig_8617 18 . C T 121.899 . AB=0.176471;ABP=49.3776;AC=3;AF=0.375;AN=8;AO=9;CIGAR=1X;DP=65;DPB=65;DPRA=1.21429;EPP=22.5536;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.444444;PAIREDR=0.660714;PAO=0;PQA=0;PQR=0;PRO=0;QA=353;QR=2263;RO=56;RPL=0;RPP=22.5536;RPPR=124.613;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:14:14,0:14:571:0:0:0,-4.21442,-51.7317 0/1:21:18,3:18:727:3:107:-3.65982,0,-59.4329 0/1:25:20,5:20:802:5:205:-11.3093,0,-64.9717 0/1:5:4,1:4:163:1:41:-2.58942,0,-13.5533 dDocent_Contig_8618 108 . G T 453.317 . AB=0.284091;ABP=38.6422;AC=4;AF=0.5;AN=8;AO=25;CIGAR=1X;DP=88;DPB=88;DPRA=0;EPP=57.2971;EPPR=139.813;GTI=0;LEN=1;MEANALT=1;MQM=45.2;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=864;QR=2043;RO=63;RPL=0;RPP=57.2971;RPPR=139.813;RPR=25;RUN=1;SAF=0;SAP=57.2971;SAR=25;SRF=0;SRP=139.813;SRR=63;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:39:25,14:25:830:14:484:-31.5893,0,-63.2657 0/1:8:7,1:7:227:1:35:-1.04028,0,-18.34 0/1:20:15,5:15:481:5:171:-9.5677,0,-37.5752 0/1:21:16,5:16:505:5:174:-9.56088,0,-39.4295 dDocent_Contig_8619 34 . A G 63.6275 . AB=0.25;ABP=9.52472;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=37;DPB=37;DPRA=1.44;EPP=9.52472;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=1330;RO=34;RPL=0;RPP=9.52472;RPPR=76.8404;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:9,3:9:364:3:122:-7.76013,0,-29.512 0/0:9:9,0:9:351:0:0:0,-2.70927,-31.9433 0/0:15:15,0:15:575:0:0:0,-4.51545,-52.0704 0/0:1:1,0:1:40:0:0:0,-0.30103,-3.99568 dDocent_Contig_8620 193 . C T 147.928 . AB=0.304348;ABP=10.6577;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=61;DPB=61;DPRA=1.81579;EPP=18.2106;EPPR=120.27;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=253;QR=2125;RO=54;RPL=7;RPP=18.2106;RPPR=120.27;RPR=0;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=120.27;SRR=54;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:16,7:16:616:7:253:-16.1906,0,-48.8435 0/0:27:27,0:27:1073:0:0:0,-8.12781,-96.8597 0/0:4:4,0:4:156:0:0:0,-1.20412,-14.4141 0/0:7:7,0:7:280:0:0:0,-2.10721,-25.5712 dDocent_Contig_8621 19 . T A 826.407 . AB=0.301724;ABP=42.621;AC=4;AF=0.5;AN=8;AO=35;CIGAR=1X;DP=116;DPB=116;DPRA=0;EPP=79.0118;EPPR=178.9;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1373;QR=3246;RO=81;RPL=0;RPP=79.0118;RPPR=178.9;RPR=35;RUN=1;SAF=35;SAP=79.0118;SAR=0;SRF=81;SRP=178.9;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:38:25,13:25:1011:13:519:-35.6173,0,-79.8443 0/1:49:34,15:34:1363:15:600:-39.5865,0,-108.179 0/1:17:13,4:13:522:4:149:-8.65209,0,-42.209 0/1:12:9,3:9:350:3:105:-6.18278,0,-28.2398 dDocent_Contig_8622 33 . C T 62.699 . AB=0.25;ABP=9.52472;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=63;DPB=63;DPRA=0.705882;EPP=9.52472;EPPR=124.758;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.966667;PAO=0;PQA=0;PQR=0;PRO=0;QA=121;QR=2384;RO=60;RPL=0;RPP=9.52472;RPPR=133.299;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=59;SRP=124.758;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:9,3:9:351:3:121:-7.66784,0,-28.336 0/0:15:15,0:15:605:0:0:0,-4.51545,-54.7887 0/0:19:19,0:19:750:0:0:0,-5.71957,-67.8243 0/0:17:17,0:17:678:0:0:0,-5.11751,-61.3522 dDocent_Contig_8623 20 . C A 636.156 . AB=0.45;ABP=3.87889;AC=5;AF=0.625;AN=8;AO=22;CIGAR=1X3M1X2M3X;DP=44;DPB=44;DPRA=0;EPP=50.7827;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=3.46945e-18;PAIRED=0.954545;PAIREDR=0.947368;PAO=0;PQA=0;PQR=0;PRO=0;QA=878;QR=749;RO=19;RPL=0;RPP=50.7827;RPPR=44.2683;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:7:5,2,0:5:197:2,0:80,0:-5.48458,0,-15.9992,-6.98973,-16.6013,-23.1931 0|1:13:6,4,3:6:239:4,3:161,111:-11.4816,0,-18.496,-4.22303,-10.6309,-22.9987 0|1:20:8,12,0:8:313:12,0:476,0:-37.1717,0,-22.5132,-39.5799,-26.1255,-65.3124 1|1:4:0,4,0:0:0:4,0:161,0:-14.8755,-1.20412,0,-14.8755,-1.20412,-14.8755 dDocent_Contig_8625 40 . T G 42.3531 . AB=0.16;ABP=28.1125;AC=2;AF=0.25;AN=8;AO=5;CIGAR=1X;DP=47;DPB=47;DPRA=2.8;EPP=13.8677;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=196;QR=1662;RO=42;RPL=0;RPP=13.8677;RPPR=94.2121;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:8,1:8:326:1:41:-1.3853,0,-27.0006 0/0:5:5,0:5:196:0:0:0,-1.50515,-18.0134 0/0:17:16,1:16:637:1:40:0,-1.12183,-53.6658 0/1:16:13,3:13:503:3:115:-5.90855,0,-40.7944 dDocent_Contig_8626 16 . T A 442.46 . AB=0.215686;ABP=74.6263;AC=4;AF=0.5;AN=8;AO=22;CIGAR=1X;DP=102;DPB=102;DPRA=0;EPP=50.7827;EPPR=176.728;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=892;QR=3216;RO=80;RPL=0;RPP=50.7827;RPPR=176.728;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=80;SRP=176.728;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:19,11:19:766:11:447:-31.555,0,-60.2291 0/1:37:31,6:31:1255:6:244:-11.2005,0,-102.075 0/1:20:18,2:18:717:2:79:-1.47703,0,-58.8316 0/1:15:12,3:12:478:3:122:-6.85704,0,-38.8536 dDocent_Contig_8627 14 . A C 160.751 . AB=0.191489;ABP=41.8658;AC=2;AF=0.25;AN=8;AO=9;CIGAR=1X;DP=75;DPB=75;DPRA=1.67857;EPP=22.5536;EPPR=146.327;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=58.2576;NS=4;NUMALT=1;ODDS=0;PAIRED=0.777778;PAIREDR=0.878788;PAO=0;PQA=0;PQR=0;PRO=0;QA=365;QR=2661;RO=66;RPL=0;RPP=22.5536;RPPR=146.327;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=66;SRP=146.327;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:17,6:17:684:6:243:-15.3245,0,-54.9667 0/0:20:20,0:20:802:0:0:0,-6.0206,-72.4969 0/1:24:21,3:21:849:3:122:-4.14777,0,-67.4323 0/0:8:8,0:8:326:0:0:0,-2.40824,-28.2197 dDocent_Contig_8629 7 . C T 175.633 . AB=0.275862;ABP=15.6647;AC=1;AF=0.125;AN=8;AO=8;CIGAR=2X;DP=81;DPB=81;DPRA=1.67308;EPP=20.3821;EPPR=157.185;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=307;QR=2726;RO=71;RPL=0;RPP=20.3821;RPPR=157.185;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=71;SRP=157.185;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:27:25,0,2:25:963:0,2:0,78:0,-7.52575,-86.5953,-0.724337,-80.1832,-79.5811 0|1:29:21,8,0:21:809:8,0:307,0:-19.262,0,-64.405,-25.5836,-66.8132,-92.013 0|0:17:17,0,0:17:646:0,0:0,0:0,-5.11751,-58.4734,-5.11751,-58.4734,-58.4734 0|0:8:8,0,0:8:308:0,0:0,0:0,-2.40824,-28.0821,-2.40824,-28.0821,-28.0821 dDocent_Contig_8630 74 . T C 1507.32 . AB=0.5;ABP=3.0103;AC=4;AF=0.5;AN=8;AO=64;CIGAR=1X1M;DP=128;DPB=128;DPRA=0;EPP=141.985;EPPR=128.956;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2160;QR=1925;RO=58;RPL=64;RPP=141.985;RPPR=128.956;RPR=0;RUN=1;SAF=64;SAP=141.985;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:38:17,3,17:17:574:3,17:100,569:-40.9803,-38.003,-83.63,0,-38.4558,-41.4327 0|1:55:30,1,24:30:992:1,24:16,812:-56.9714,-64.8705,-144.786,0,-79.2523,-73.1611 0|1:29:8,1,20:8:275:1,20:35,678:-52.5607,-52.1207,-74.1541,0,-19.4792,-16.307 0|1:6:3,0,3:3:84:0,3:0,101:-7.61759,-8.52068,-15.1473,0,-6.93486,-6.03177 dDocent_Contig_8631 7 . C T 36.8751 . AB=0.133333;ABP=38.0434;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X1M1X;DP=202;DPB=202;DPRA=0.523256;EPP=11.6962;EPPR=432.962;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=156;QR=7533;RO=198;RPL=0;RPP=11.6962;RPPR=432.962;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=198;SRP=432.962;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:80:80,0:80:3032:0:0:0,-24.0824,-273.052 0|0:33:33,0:33:1263:0:0:0,-9.93399,-113.962 0|0:59:59,0:59:2238:0:0:0,-17.7608,-201.647 0|1:30:26,4:26:1000:4:156:-5.38639,0,-81.2815 dDocent_Contig_8633 7 . C A 59.3707 . AB=0.190476;ABP=20.4855;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=74;DPB=74;DPRA=2.08333;EPP=16.0391;EPPR=150.67;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.970588;PAO=0;PQA=0;PQR=0;PRO=0;QA=229;QR=2619;RO=68;RPL=0;RPP=16.0391;RPPR=150.67;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=68;SRP=150.67;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:22:22,0:22:848:0:0:0,-6.62266,-76.6404 0/0:29:27,2:27:1040:2:78:0,-1.3264,-86.5039 0/1:21:17,4:17:657:4:151:-7.63572,0,-53.1454 0/0:2:2,0:2:74:0:0:0,-0.60206,-7.02543 dDocent_Contig_8634 90 . C T 92.9354 . AB=0.233333;ABP=21.5402;AC=2;AF=0.25;AN=8;AO=7;CIGAR=1X;DP=76;DPB=76;DPRA=0.652174;EPP=18.2106;EPPR=152.842;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=234;QR=2380;RO=69;RPL=7;RPP=18.2106;RPPR=152.842;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=69;SRP=152.842;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:33:33,0:33:1146:0:0:0,-9.93399,-103.448 0/1:10:7,3:7:243:3:101:-6.41343,0,-19.1986 0/1:20:16,4:16:551:4:133:-6.27804,0,-43.8958 0/0:13:13,0:13:440:0:0:0,-3.91339,-39.9247 dDocent_Contig_8635 12 . G A 2492.89 . 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AB=0.307692;ABP=11.3621;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X1M1X2M7D1M;DP=89;DPB=84.6923;DPRA=1.2381;EPP=20.3821;EPPR=178.9;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=316;QR=3137;RO=81;RPL=8;RPP=20.3821;RPPR=178.9;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=81;SRP=178.9;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:26:18,8:18:696:8:316:-20.9797,0,-55.1431 0|0:29:29,0:29:1118:0:0:0,-8.72987,-100.914 0|0:11:11,0:11:432:0:0:0,-3.31133,-39.2349 0|0:23:23,0:23:891:0:0:0,-6.92369,-80.5057 dDocent_Contig_8644 69 . A G 107.646 . 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AB=0.296875;ABP=25.9465;AC=3;AF=0.375;AN=8;AO=19;CIGAR=1X;DP=67;DPB=67;DPRA=7.11111;EPP=44.2683;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=693;QR=1672;RO=48;RPL=0;RPP=44.2683;RPPR=107.241;RPR=19;RUN=1;SAF=0;SAP=44.2683;SAR=19;SRF=0;SRP=107.241;SRR=48;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:33:23,10:23:809:10:367:-23.4366,0,-63.1867 0/1:21:15,6:15:497:6:212:-13.0966,0,-38.7192 0/1:10:7,3:7:252:3:114:-7.62168,0,-20.0179 0/0:3:3,0:3:114:0:0:0,-0.90309,-10.632 dDocent_Contig_8651 85 . C A 100.043 . AB=0;ABP=0;AC=2;AF=0.25;AN=8;AO=6;CIGAR=1X;DP=503;DPB=503;DPRA=2.83019;EPP=16.0391;EPPR=1082.23;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=0.166667;PAIREDR=0.991952;PAO=0;PQA=0;PQR=0;PRO=0;QA=181;QR=16747;RO=497;RPL=6;RPP=16.0391;RPPR=1082.23;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=497;SRP=1082.23;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:371:369,2:369:12467:2:70:0,-105.035,-1115.33 1/1:3:0,3:0:0:3:104:-9.70309,-0.90309,0 0/0:53:53,0:53:1781:0:0:0,-15.9546,-160.571 0/0:76:75,1:75:2499:1:7:0,-22.1783,-224.464 dDocent_Contig_8652 53 . G A 33.8426 . AB=0.125;ABP=42.0968;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=88;DPB=88;DPRA=1.71429;EPP=11.6962;EPPR=185.414;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=0.97619;PAO=0;PQA=0;PQR=0;PRO=0;QA=156;QR=3378;RO=84;RPL=4;RPP=11.6962;RPPR=185.414;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=84;SRP=185.414;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:32:28,4:28:1129:4:156:-4.78199,0,-92.2557 0/0:35:35,0:35:1406:0:0:0,-10.536,-126.793 0/0:16:16,0:16:648:0:0:0,-4.81648,-58.6532 0/0:5:5,0:5:195:0:0:0,-1.50515,-17.9219 dDocent_Contig_8653 156 . G C 60.0434 . AB=0.15873;ABP=66.7413;AC=3;AF=0.375;AN=8;AO=10;CIGAR=1X;DP=68;DPB=68;DPRA=4.2;EPP=24.725;EPPR=128.956;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=313;QR=2224;RO=58;RPL=0;RPP=24.725;RPPR=128.956;RPR=10;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=128.956;SRR=58;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:22,3:22:832:3:88:-0.682264,0,-67.6618 0/1:35:30,5:30:1155:5:178:-5.82691,0,-93.699 0/0:5:5,0:5:197:0:0:0,-1.50515,-18.1064 0/1:3:1,2:1:40:2:47:-3.55864,0,-3.09259 dDocent_Contig_8654 12 . T G 4819.88 . AB=0.765;ABP=125.004;AC=4;AF=0.5;AN=8;AO=153;CIGAR=1X;DP=200;DPB=200;DPRA=0;EPP=335.246;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6096;QR=1855;RO=47;RPL=0;RPP=335.246;RPPR=105.07;RPR=153;RUN=1;SAF=153;SAP=335.246;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:72:23,49:23:895:49:1984:-157.073,0,-59.1733 0/1:84:13,71:13:525:71:2800:-226.817,0,-22.3096 0/1:34:7,27:7:282:27:1072:-86.5316,0,-15.5176 0/1:10:4,6:4:153:6:240:-18.9648,0,-11.1276 dDocent_Contig_8656 67 . C A 44.8729 . AB=0.1875;ABP=16.582;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=44;DPB=44;DPRA=1.44444;EPP=11.6962;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=126;QR=1593;RO=40;RPL=4;RPP=11.6962;RPPR=89.8692;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:8:8,0:8:322:0:0:0,-2.40824,-29.3487 0/1:16:13,3:13:526:3:118:-6.18624,0,-42.8707 0/0:10:9,1:9:366:1:8:0,-2.2103,-32.5052 0/0:10:10,0:10:379:0:0:0,-3.0103,-34.4566 dDocent_Contig_8657 17 . T G 159.072 . AB=0.228571;ABP=25.4075;AC=2;AF=0.25;AN=8;AO=9;CIGAR=2X;DP=71;DPB=71;DPRA=0.793651;EPP=22.5536;EPPR=137.642;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=364;QR=2352;RO=62;RPL=0;RPP=22.5536;RPPR=137.642;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:21:21,0:21:806:0:0:0,-6.32163,-72.866 0|1:15:12,3:12:445:3:120:-6.67224,0,-35.8762 0|1:20:15,5:15:560:5:203:-12.6325,0,-44.718 0|0:15:14,1:14:541:1:41:0,-0.420883,-44.9408 dDocent_Contig_8658 13 . T C 2709.63 . AB=0.542553;ABP=4.48875;AC=5;AF=0.625;AN=8;AO=90;CIGAR=1M1D1M1X;DP=135;DPB=112.5;DPRA=0;EPP=198.443;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=49.1333;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=3560;QR=1776;RO=45;RPL=0;RPP=198.443;RPPR=100.727;RPR=90;RUN=1;SAF=90;SAP=198.443;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:47:21,26:21:816:26:1021:-75.7842,0,-59.6096 0|1:13:9,4:9:359:4:152:-9.77559,0,-28.7601 1|1:41:2,39:2:82:39:1546:-125.756,-4.56255,0 0|1:34:13,21:13:519:21:841:-65.0448,0,-36.8235 dDocent_Contig_8659 8 . T G 143.334 . AB=0.216216;ABP=28.8919;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=183;DPB=183;DPRA=0.760274;EPP=20.3821;EPPR=363.674;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=58.3333;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.913793;PAO=0;PQA=0;PQR=0;PRO=0;QA=298;QR=6681;RO=174;RPL=0;RPP=20.3821;RPPR=380.846;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=172;SRP=363.674;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:79:79,0:79:3026:0:0:0,-23.7814,-270.761 0/1:37:29,8:29:1121:8:298:-16.0324,0,-89.7366 0/0:41:41,0:41:1567:0:0:0,-12.3422,-140.968 0/0:26:25,0:25:967:0:0:0,-7.52575,-85.1012 dDocent_Contig_8660 16 . C G 67.8812 . AB=0.2;ABP=18.6449;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=53;DPB=53;DPRA=1.81818;EPP=11.6962;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=157;QR=1891;RO=49;RPL=0;RPP=11.6962;RPPR=109.412;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:8:8,0:8:264:0:0:0,-2.40824,-24.0697 0/1:20:16,4:16:632:4:157:-8.48708,0,-51.19 0/0:18:18,0:18:714:0:0:0,-5.41854,-64.5887 0/0:7:7,0:7:281:0:0:0,-2.10721,-25.6626 dDocent_Contig_8662 91 . C A 1144.47 . AB=0.432203;ABP=7.72129;AC=4;AF=0.5;AN=8;AO=51;CIGAR=1M1I1M1X;DP=118;DPB=135;DPRA=0;EPP=113.755;EPPR=148.499;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1734;QR=2297;RO=67;RPL=51;RPP=113.755;RPPR=148.499;RPR=0;RUN=1;SAF=51;SAP=113.755;SAR=0;SRF=67;SRP=148.499;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:64:35,29:35:1193:29:982:-69.4236,0,-88.4077 0|1:29:14,15:14:480:15:514:-37.8564,0,-34.7973 0|1:20:16,4:16:555:4:138:-6.7398,0,-44.2577 0|1:5:2,3:2:69:3:100:-7.82522,0,-5.04751 dDocent_Contig_8663 22 . G A 49.1557 . AB=0.16;ABP=28.1125;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=119;DPB=119;DPRA=0;EPP=20.3821;EPPR=244.044;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=316;QR=4431;RO=111;RPL=0;RPP=20.3821;RPPR=244.044;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=111;SRP=244.044;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:26:24,2:24:947:2:81:0,-0.141046,-77.8386 0/0:38:37,1:37:1490:1:41:0,-7.34457,-130.249 0/1:25:21,4:21:855:4:153:-6.61375,0,-69.7342 0/0:30:29,1:29:1139:1:41:0,-4.93633,-98.6947 dDocent_Contig_8664 32 . T A 82.7941 . AB=0.178571;ABP=28.1373;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=86;DPB=86;DPRA=1.6875;EPP=16.0391;EPPR=176.728;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.725;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.9875;PAO=0;PQA=0;PQR=0;PRO=0;QA=229;QR=3175;RO=80;RPL=0;RPP=16.0391;RPPR=176.728;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=80;SRP=176.728;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:23,5:23:914:5:197:-9.67735,0,-74.1377 0/0:26:25,1:25:1010:1:32:0,-4.62747,-87.9945 0/0:22:22,0:22:874:0:0:0,-6.62266,-78.5442 0/0:10:10,0:10:377:0:0:0,-3.0103,-34.2775 dDocent_Contig_8665 7 . C T 402.91 . AB=0.483871;ABP=3.08035;AC=2;AF=0.25;AN=8;AO=16;CIGAR=1X;DP=59;DPB=59;DPRA=1.45455;EPP=37.7539;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.953488;PAO=0;PQA=0;PQR=0;PRO=0;QA=620;QR=1658;RO=43;RPL=0;RPP=37.7539;RPPR=96.3836;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:11,0:11:421:0:0:0,-3.31133,-38.2427 0/0:17:16,1:16:621:1:39:0,-1.22095,-52.3335 0/1:22:13,9:13:499:9:347:-24.967,0,-38.6348 0/1:9:3,6:3:117:6:234:-18.7218,0,-8.20111 dDocent_Contig_8666 23 . G A 290.756 . AB=0.366667;ABP=7.64277;AC=1;AF=0.125;AN=8;AO=11;CIGAR=1X;DP=71;DPB=71;DPRA=2.19512;EPP=26.8965;EPPR=133.299;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=435;QR=2354;RO=60;RPL=0;RPP=26.8965;RPPR=133.299;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:19,11:19:754:11:435:-30.4735,0,-59.1496 0/0:17:17,0:17:663:0:0:0,-5.11751,-59.9971 0/0:19:19,0:19:740:0:0:0,-5.71957,-66.9152 0/0:5:5,0:5:197:0:0:0,-1.50515,-18.106 dDocent_Contig_8667 14 . C T 435.54 . AB=0.140351;ABP=259.168;AC=1;AF=0.125;AN=8;AO=55;CIGAR=1X;DP=596;DPB=596;DPRA=4.76068;EPP=122.441;EPPR=1177.78;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.0536;NS=4;NUMALT=1;ODDS=0;PAIRED=0.963636;PAIREDR=0.913124;PAO=0;PQA=0;PQR=0;PRO=0;QA=2170;QR=21565;RO=541;RPL=0;RPP=122.441;RPPR=1177.78;RPR=55;RUN=1;SAF=55;SAP=122.441;SAR=0;SRF=541;SRP=1177.78;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:228:196,32:196:7846:32:1259:-44.952,0,-631.982 0/0:198:184,14:184:7314:14:549:0,-9.85428,-606.059 0/0:131:122,9:122:4851:9:362:0,-6.49115,-397.424 0/0:39:39,0:39:1554:0:0:0,-11.7402,-139.244 dDocent_Contig_8668 27 . G C 1315.96 . AB=0.344595;ABP=34.0565;AC=4;AF=0.5;AN=8;AO=51;CIGAR=1X;DP=148;DPB=148;DPRA=0;EPP=113.755;EPPR=213.643;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2024;QR=3888;RO=97;RPL=0;RPP=113.755;RPPR=213.643;RPR=51;RUN=1;SAF=51;SAP=113.755;SAR=0;SRF=97;SRP=213.643;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:37:27,10:27:1063:10:399:-25.1309,0,-84.8269 0/1:29:19,10:19:772:10:392:-26.9035,0,-61.0695 0/1:38:28,10:28:1134:10:407:-25.5515,0,-90.9012 0/1:44:23,21:23:919:21:826:-61.4083,0,-69.7704 dDocent_Contig_8669 53 . G T 89.5259 . AB=0.131148;ABP=75.0961;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=159;DPB=159;DPRA=1.86735;EPP=20.3821;EPPR=328.731;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.993333;PAO=0;PQA=0;PQR=0;PRO=0;QA=315;QR=5849;RO=150;RPL=8;RPP=20.3821;RPPR=328.731;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=150;SRP=328.731;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:61:53,8:53:2013:8:315:-10.3505,0,-163.004 0/0:54:53,0:53:2091:0:0:0,-15.9546,-187.983 0/0:29:29,0:29:1148:0:0:0,-8.72987,-103.602 0/0:15:15,0:15:597:0:0:0,-4.51545,-54.0658 dDocent_Contig_8670 12 . T C 4374.49 . AB=0.671429;ABP=56.6146;AC=4;AF=0.5;AN=8;AO=141;CIGAR=1X;DP=210;DPB=210;DPRA=0;EPP=309.188;EPPR=152.842;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.985816;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5634;QR=2756;RO=69;RPL=0;RPP=309.188;RPPR=152.842;RPR=141;RUN=1;SAF=141;SAP=309.188;SAR=0;SRF=69;SRP=152.842;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:74:16,58:16:649:58:2318:-186.493,0,-36.4665 0/1:74:31,43:31:1213:43:1722:-132.919,0,-87.1591 0/1:53:18,35:18:731:35:1391:-109.492,0,-50.1594 0/1:9:4,5:4:163:5:203:-15.9436,0,-12.3492 dDocent_Contig_8671 9 . C A 73.0387 . AB=0.181818;ABP=32.0291;AC=2;AF=0.25;AN=8;AO=7;CIGAR=1X;DP=56;DPB=56;DPRA=2.77778;EPP=18.2106;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.918367;PAO=0;PQA=0;PQR=0;PRO=0;QA=260;QR=1874;RO=49;RPL=0;RPP=18.2106;RPPR=109.412;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:14,4:14:541:4:143:-7.79988,0,-43.6173 0/0:6:6,0:6:234:0:0:0,-1.80618,-21.4311 0/0:17:16,1:16:598:1:39:0,-1.22095,-50.257 0/1:15:13,2:13:501:2:78:-2.88802,0,-40.9225 dDocent_Contig_8672 50 . C A 45.0798 . AB=0.2;ABP=14.7363;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=65;DPB=65;DPRA=0.9;EPP=9.52472;EPPR=137.642;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=115;QR=2387;RO=62;RPL=3;RPP=9.52472;RPPR=137.642;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:13:13,0:13:478:0:0:0,-3.91339,-43.3456 0/1:15:12,3:12:471:3:115:-6.20693,0,-38.2204 0/0:16:16,0:16:596:0:0:0,-4.81648,-53.9571 0/0:21:21,0:21:842:0:0:0,-6.32163,-76.0946 dDocent_Contig_8674 4 . T C 110.445 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=4;CIGAR=2I1X2M1X;DP=4;DPB=6;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=32;MQMR=0;NS=1;NUMALT=1;ODDS=7.37776;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=136;QR=0;RO=0;RPL=0;RPP=11.6962;RPPR=0;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:4:0,4:0:0:4:136:-11.0443,-1.20412,0 .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. dDocent_Contig_8675 23 . A G 725.318 . AB=0.142857;ABP=72.8076;AC=4;AF=0.5;AN=8;AO=9;CIGAR=1X3M2X3M;DP=73;DPB=73;DPRA=6.3;EPP=22.5536;EPPR=79.0118;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=353;QR=1394;RO=35;RPL=0;RPP=22.5536;RPPR=79.0118;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:22:14,2,5,1:14:556:2,5,1:74,200,39:-12.2744,-10.4422,-55.6118,0,-39.7386,-44.284,-13.2831,-53.0083,-42.5835,-58.7583 0|1:41:14,0,19,8:14:559:0,19,8:0,733,314:-55.9688,-60.1832,-106.228,0,-46.0452,-40.3256,-34.3581,-80.4046,-20.2245,-77.9964 0|0:8:7,0,0,0:7:279:0,0,0:0,0,0:0,-2.10721,-25.0733,-2.10721,-25.0733,-25.0733,-2.10721,-25.0733,-25.0733,-25.0733 1|1:2:0,0,2,0:0:0:0,2,0:0,81,0:-7.68573,-7.68573,-7.68573,-0.60206,-0.60206,0,-7.68573,-7.68573,-0.60206,-7.68573 dDocent_Contig_8676 14 . C A 106.721 . AB=0.2;ABP=26.4622;AC=2;AF=0.25;AN=8;AO=6;CIGAR=1X;DP=41;DPB=41;DPRA=2.72727;EPP=16.0391;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.885714;PAO=0;PQA=0;PQR=0;PRO=0;QA=241;QR=1383;RO=35;RPL=0;RPP=16.0391;RPPR=79.0118;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:9,1:9:355:1:41:-1.08427,0,-29.3004 0/0:2:2,0:2:80:0:0:0,-0.60206,-7.59157 0/1:20:15,5:15:591:5:200:-12.3578,0,-47.5041 0/0:9:9,0:9:357:0:0:0,-2.70927,-32.4907 dDocent_Contig_8677 60 . A C 37.6863 . AB=0.173913;ABP=24.253;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=73;DPB=73;DPRA=1.38;EPP=11.6962;EPPR=144.282;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.811594;PAO=0;PQA=0;PQR=0;PRO=0;QA=134;QR=2450;RO=69;RPL=4;RPP=11.6962;RPPR=152.842;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=68;SRP=144.282;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:14:14,0:14:487:0:0:0,-4.21442,-44.16 0/0:21:21,0:21:759:0:0:0,-6.32163,-68.6359 0/0:15:15,0:15:537:0:0:0,-4.51545,-48.6652 0/1:23:19,4:19:667:4:134:-5.46752,0,-53.4321 dDocent_Contig_8678 30 . A T 222.592 . AB=0.444444;ABP=3.49285;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=50;DPB=50;DPRA=1.6875;EPP=20.3821;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=319;QR=1685;RO=42;RPL=0;RPP=20.3821;RPPR=94.2121;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:10,8:10:402:8:319:-23.6571,0,-31.1213 0/0:20:20,0:20:798:0:0:0,-6.0206,-72.1354 0/0:7:7,0:7:283:0:0:0,-2.10721,-25.8434 0/0:5:5,0:5:202:0:0:0,-1.50515,-18.5615 dDocent_Contig_8679 113 . T C 37.9246 . AB=0.173913;ABP=24.253;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=66;DPB=66;DPRA=1.60465;EPP=11.6962;EPPR=137.642;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.9516;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=131;QR=2093;RO=62;RPL=0;RPP=11.6962;RPPR=137.642;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=137.642;SRR=62;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:19,4:19:648:4:131:-5.19032,0,-51.7172 0/0:26:26,0:26:869:0:0:0,-7.82678,-78.5159 0/0:10:10,0:10:345:0:0:0,-3.0103,-31.3835 0/0:7:7,0:7:231:0:0:0,-2.10721,-21.1133 dDocent_Contig_8681 16 . G A 204.754 . AB=0.193548;ABP=53.5846;AC=3;AF=0.375;AN=8;AO=12;CIGAR=1X;DP=74;DPB=74;DPRA=1.72222;EPP=29.068;EPPR=137.642;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=482;QR=2418;RO=62;RPL=0;RPP=29.068;RPPR=137.642;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:16,3:16:635:3:121:-5.56042,0,-51.7605 0/1:19:13,6:13:511:6:239:-16.1643,0,-40.6142 0/1:24:21,3:21:812:3:122:-4.14777,0,-66.157 0/0:12:12,0:12:460:0:0:0,-3.61236,-41.7437 dDocent_Contig_8682 14 . T G 49.4934 . AB=0.176471;ABP=18.4661;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=72;DPB=72;DPRA=0.927273;EPP=9.52472;EPPR=152.842;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=123;QR=2767;RO=69;RPL=0;RPP=9.52472;RPPR=152.842;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=69;SRP=152.842;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:14,3:14:562:3:123:-6.34728,0,-45.8014 0/0:27:27,0:27:1079:0:0:0,-8.12781,-97.3985 0/0:17:17,0:17:678:0:0:0,-5.11751,-61.3506 0/0:11:11,0:11:448:0:0:0,-3.31133,-40.676 dDocent_Contig_8683 16 . T C 393.052 . AB=0.314815;ABP=19.0953;AC=3;AF=0.375;AN=8;AO=17;CIGAR=1X;DP=69;DPB=69;DPRA=1.2;EPP=39.9253;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.823529;PAIREDR=0.807692;PAO=0;PQA=0;PQR=0;PRO=0;QA=665;QR=2097;RO=52;RPL=0;RPP=39.9253;RPPR=115.927;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:11,4:11:435:4:163:-10.543,0,-34.9857 0/1:21:13,8:13:532:8:320:-22.8449,0,-41.9045 0/1:18:13,5:13:522:5:182:-11.3152,0,-41.9076 0/0:15:15,0:15:608:0:0:0,-4.51545,-55.0583 dDocent_Contig_8684 13 . G C 347.496 . AB=0.190476;ABP=20.4855;AC=3;AF=0.375;AN=8;AO=4;CIGAR=1X5M1X2M1X;DP=74;DPB=74;DPRA=1.23529;EPP=11.6962;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=159;QR=2147;RO=55;RPL=0;RPP=11.6962;RPPR=122.441;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:17:16,1,0:16:623:1,0:40,0:0,-1.12183,-52.412,-4.81648,-52.713,-56.0087 0|1:27:17,9,0:17:670:9,0:346,0:-23.2715,0,-52.4075,-28.389,-55.1168,-83.5164 0|1:21:17,0,4:17:660:0,4:0,159:-8.37032,-13.4878,-67.7069,0,-54.6143,-53.4102 0|1:9:5,3,0:5:194:3,0:119,0:-8.50559,0,-15.268,-10.0107,-16.1711,-25.9855 dDocent_Contig_8685 26 . C T 185.498 . AB=0.158537;ABP=86.0559;AC=2;AF=0.25;AN=8;AO=13;CIGAR=1X;DP=137;DPB=137;DPRA=1.49091;EPP=31.2394;EPPR=263.657;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=0.830645;PAO=0;PQA=0;PQR=0;PRO=0;QA=510;QR=4938;RO=124;RPL=0;RPP=31.2394;RPPR=272.273;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=123;SRP=263.657;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:40:33,7:33:1321:7:273:-12.8907,0,-107.11 0/0:37:37,0:37:1484:0:0:0,-11.1381,-133.808 0/1:42:36,6:36:1405:6:237:-9.05707,0,-114.042 0/0:18:18,0:18:728:0:0:0,-5.41854,-65.845 dDocent_Contig_8686 107 . N A 506.785 . AB=0.538462;ABP=3.34437;AC=8;AF=1;AN=8;AO=19;CIGAR=1X1M;DP=37;DPB=37;DPRA=0;EPP=44.2683;EPPR=0;GTI=0;LEN=1;MEANALT=1.75;MQM=25.5789;MQMR=0;NS=4;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=486;QR=0;RO=0;RPL=0;RPP=44.2683;RPPR=0;RPR=19;RUN=1;SAF=0;SAP=44.2683;SAR=19;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:8:0,6,2:0:0:6,2:210,30:-8.64055,-1.80618,0,-7.08173,-0.117046,-6.47967 1|1:18:0,6,12:0:0:6,12:209,324:-28.9597,-22.5411,-20.735,-6.60043,0,-2.98807 1|1:8:0,6,2:0:0:6,2:187,51:-9.54044,-3.67222,-1.86604,-6.07276,0,-5.4707 1|1:3:0,0,3:0:0:0,3:0,81:-6.71833,-6.71833,-6.71833,-0.90309,-0.90309,0 dDocent_Contig_8687 19 . T C 2035.69 . AB=0.0752688;ABP=148.732;AC=4;AF=0.5;AN=8;AO=7;CIGAR=1X2M1X;DP=142;DPB=142;DPRA=0;EPP=18.2106;EPPR=79.0118;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=286;QR=1367;RO=35;RPL=0;RPP=18.2106;RPPR=79.0118;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:34:8,20,0,6:8:308:20,0,6:795,0,233:-63.054,0,-19.2623,-65.4622,-25.2829,-90.7445,-46.331,-6.14819,-71.6121,-69.806 1|0:44:10,19,3,12:10:388:19,3,12:763,123,466:-65.7092,-5.83945,-31.992,-58.5659,-27.5564,-89.5336,-31.01,0,-52.7243,-59.2654 0|1:49:16,14,4,15:16:631:14,4,15:547,163,571:-40.1651,0,-47.7166,-31.5295,-38.4796,-82.2498,-2.83054,-9.7798,-41.2964,-50.23 1|0:15:1,11,0,3:1:40:11,0,3:443,0,119:-42.038,-5.80209,-5.79288,-42.339,-9.10421,-45.6344,-33.2203,0,-36.5152,-35.6121 dDocent_Contig_8688 19 . G A 2202.59 . AB=0.569231;ABP=8.42228;AC=4;AF=0.5;AN=8;AO=74;CIGAR=1X;DP=130;DPB=130;DPRA=0;EPP=163.699;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=56.4643;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.875;PAO=0;PQA=0;PQR=0;PRO=0;QA=2950;QR=2275;RO=56;RPL=0;RPP=163.699;RPPR=124.613;RPR=74;RUN=1;SAF=74;SAP=163.699;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:43:9,34:9:365:34:1349:-108.724,0,-20.2706 0/1:33:17,16:17:693:16:646:-48.5392,0,-51.541 0/1:42:24,18:24:978:18:717:-52.2126,0,-71.9293 0/1:12:6,6:6:239:6:238:-18.1812,0,-17.2359 dDocent_Contig_8689 10 . C A 127.718 . AB=0.225806;ABP=23.254;AC=2;AF=0.25;AN=8;AO=8;CIGAR=1X;DP=56;DPB=56;DPRA=3.4;EPP=20.3821;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=0;PAIREDR=0.9375;PAO=0;PQA=0;PQR=0;PRO=0;QA=316;QR=1929;RO=48;RPL=0;RPP=20.3821;RPPR=107.241;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:11,4:11:441:4:164:-10.6344,0,-35.5296 0/0:20:19,1:19:771:1:41:0,-1.92603,-65.6142 0/1:16:13,3:13:518:3:111:-5.53526,0,-42.1503 0/0:5:5,0:5:199:0:0:0,-1.50515,-18.2874 dDocent_Contig_8690 15 . C A 43.3825 . AB=0.148148;ABP=32.0437;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=63;DPB=63;DPRA=2.25;EPP=11.6962;EPPR=131.127;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.25;PAIREDR=0.949153;PAO=0;PQA=0;PQR=0;PRO=0;QA=150;QR=2358;RO=59;RPL=0;RPP=11.6962;RPPR=131.127;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=59;SRP=131.127;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:23,4:23:904:4:150:-5.73603,0,-73.5281 0/0:19:19,0:19:770:0:0:0,-5.71957,-69.6192 0/0:3:3,0:3:122:0:0:0,-0.90309,-11.3725 0/0:14:14,0:14:562:0:0:0,-4.21442,-50.9226 dDocent_Contig_8691 159 . A G 471.146 . 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AB=0.222222;ABP=27.1378;AC=1;AF=0.125;AN=8;AO=11;CIGAR=1X;DP=143;DPB=143;DPRA=1.01408;EPP=26.8965;EPPR=289.645;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=391;QR=4788;RO=132;RPL=0;RPP=26.8965;RPPR=289.645;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=132;SRP=289.645;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:29:29,0:29:1034:0:0:0,-8.72987,-93.368 0/0:36:33,3:33:1217:3:109:0,-0.669078,-99.6653 0/1:36:28,8:28:1012:8:282:-14.8824,0,-80.5557 0/0:42:42,0:42:1525:0:0:0,-12.6433,-137.538 dDocent_Contig_8693 19 . G C 431.293 . 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AB=0.190476;ABP=72.911;AC=3;AF=0.375;AN=8;AO=16;CIGAR=1X;DP=103;DPB=103;DPRA=1.47368;EPP=37.7539;EPPR=191.928;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.965517;PAO=0;PQA=0;PQR=0;PRO=0;QA=632;QR=3443;RO=87;RPL=0;RPP=37.7539;RPPR=191.928;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=87;SRP=191.928;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:26,4:26:1038:4:157:-5.47739,0,-84.6748 0/0:19:19,0:19:755:0:0:0,-5.71957,-68.2697 0/1:32:26,6:26:1020:6:233:-11.7042,0,-82.4539 0/1:22:16,6:16:630:6:242:-15.5347,0,-50.4129 dDocent_Contig_8708 55 . G A 1840.21 . AB=0.56391;ABP=7.72876;AC=4;AF=0.5;AN=8;AO=75;CIGAR=1X;DP=133;DPB=133;DPRA=0;EPP=165.871;EPPR=126.784;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2556;QR=1939;RO=57;RPL=75;RPP=165.871;RPPR=126.784;RPR=0;RUN=1;SAF=75;SAP=165.871;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:56:28,27:28:959:27:909:-65.3984,0,-69.897 0/1:33:6,27:6:214:27:942:-75.1537,0,-9.6734 0/1:16:12,4:12:408:4:146:-8.67965,0,-32.2234 0/1:28:11,17:11:358:17:559:-42.1873,0,-24.1 dDocent_Contig_8709 133 . G T 98.7927 . AB=0.333333;ABP=6.62942;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=142;DPB=142;DPRA=0;EPP=20.3821;EPPR=293.988;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=280;QR=4630;RO=134;RPL=0;RPP=20.3821;RPPR=293.988;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=293.988;SRR=134;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:51:50,1:50:1719:1:35:0,-11.8539,-151.499 0/0:39:38,1:38:1320:1:35:0,-8.24154,-115.603 0/0:37:36,1:36:1241:1:35:0,-7.63948,-108.494 0/1:15:10,5:10:350:5:175:-11.5782,0,-27.3221 dDocent_Contig_8710 98 . N A 192.425 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=6;CIGAR=1X;DP=6;DPB=6;DPRA=0;EPP=16.0391;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=8.76405;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=210;QR=0;RO=0;RPL=6;RPP=16.0391;RPPR=0;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:6:0,6:0:0:6:210:-19.2425,-1.80618,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_8711 56 . C T 172.36 . AB=0.179104;ABP=62.9365;AC=3;AF=0.375;AN=8;AO=12;CIGAR=1X;DP=81;DPB=81;DPRA=1.59524;EPP=29.068;EPPR=152.842;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.971014;PAO=0;PQA=0;PQR=0;PRO=0;QA=463;QR=2725;RO=69;RPL=12;RPP=29.068;RPPR=152.842;RPR=0;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=69;SRP=152.842;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:14:14,0:14:547:0:0:0,-4.21442,-49.57 0/1:20:16,4:16:637:4:148:-7.66102,0,-51.643 0/1:32:26,6:26:1014:6:239:-12.2524,0,-81.9102 0/1:15:13,2:13:527:2:76:-2.69936,0,-43.2619 dDocent_Contig_8713 72 . A T 457.045 . AB=0.289474;ABP=32.268;AC=3;AF=0.375;AN=8;AO=23;CIGAR=1X;DP=101;DPB=101;DPRA=0;EPP=52.9542;EPPR=172.385;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=848;QR=2927;RO=78;RPL=23;RPP=52.9542;RPPR=172.385;RPR=0;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=78;SRP=172.385;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:14,9:14:492:9:324:-22.5752,0,-37.6805 0/0:25:24,1:24:908:1:38:0,-3.72848,-78.2344 0/1:38:27,11:27:1039:11:408:-25.6254,0,-82.3748 0/1:15:13,2:13:488:2:78:-2.88802,0,-39.7474 dDocent_Contig_8717 16 . C T 161.049 . AB=0.195652;ABP=40.0197;AC=2;AF=0.25;AN=8;AO=11;CIGAR=1X;DP=91;DPB=91;DPRA=1.26316;EPP=26.8965;EPPR=176.728;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.95;PAO=0;PQA=0;PQR=0;PRO=0;QA=442;QR=3093;RO=80;RPL=0;RPP=26.8965;RPPR=176.728;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=80;SRP=176.728;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:26:24,2:24:899:2:80:0,-0.235205,-73.6107 0/0:19:19,0:19:738:0:0:0,-5.71957,-66.743 0/1:32:26,6:26:1020:6:239:-12.2518,0,-82.4634 0/1:14:11,3:11:436:3:123:-7.25037,0,-35.3776 dDocent_Contig_8718 13 . C T 74.1739 . AB=0.235294;ABP=13.3567;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=36;DPB=36;DPRA=2.68421;EPP=11.6962;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=154;QR=1302;RO=32;RPL=0;RPP=11.6962;RPPR=72.4974;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:7:7,0:7:282:0:0:0,-2.10721,-25.7524 0/1:17:13,4:13:528:4:154:-9.11608,0,-42.749 0/0:10:10,0:10:410:0:0:0,-3.0103,-37.2606 0/0:2:2,0:2:82:0:0:0,-0.60206,-7.77968 dDocent_Contig_8719 22 . A G 35.0995 . AB=0.107143;ABP=78.0812;AC=1;AF=0.125;AN=8;AO=10;CIGAR=1X;DP=194;DPB=194;DPRA=0.80117;EPP=24.725;EPPR=402.561;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.98913;PAO=0;PQA=0;PQR=0;PRO=0;QA=375;QR=7339;RO=184;RPL=0;RPP=24.725;RPPR=402.561;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=184;SRP=402.561;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:57:57,0:57:2286:0:0:0,-17.1587,-205.903 0/0:60:57,3:57:2251:3:97:0,-9.01676,-193.72 0/1:56:50,6:50:1996:6:241:-5.20879,0,-162.974 0/0:21:20,1:20:806:1:37:0,-2.6238,-69.1572 dDocent_Contig_8720 11 . A G 450.807 . AB=0.28;ABP=34.5401;AC=4;AF=0.5;AN=8;AO=21;CIGAR=1X1M;DP=75;DPB=75;DPRA=0;EPP=48.6112;EPPR=113.755;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=816;QR=2006;RO=51;RPL=0;RPP=48.6112;RPPR=113.755;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:26:14,1,11:14:539:1,11:40,418:-30.0395,-30.9572,-74.9073,0,-40.9383,-40.923 0|1:30:23,2,5:23:907:2,5:78,197:-9.28529,-9.79851,-83.8189,0,-68.2149,-73.121 0|1:14:11,0,3:11:441:0,3:0,120:-6.97327,-10.2846,-46.6185,0,-36.7337,-35.8306 0|1:5:3,0,2:3:119:0,2:0,81:-6.18058,-7.08367,-16.8748,0,-10.1923,-9.59024 dDocent_Contig_8721 33 . T C 39.3575 . AB=0.128205;ABP=49.8362;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X2M1X;DP=146;DPB=146;DPRA=1.09346;EPP=13.8677;EPPR=309.188;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=189;QR=5389;RO=141;RPL=0;RPP=13.8677;RPPR=309.188;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=141;SRP=309.188;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:35:35,0:35:1323:0:0:0,-10.536,-119.352 0|0:64:64,0:64:2479:0:0:0,-19.2659,-223.291 0|1:39:34,5:34:1271:5:189:-5.63467,0,-102.925 0|0:8:8,0:8:316:0:0:0,-2.40824,-28.8062 dDocent_Contig_8722 20 . C T 2233.83 . AB=0.685714;ABP=34.4656;AC=4;AF=0.5;AN=8;AO=72;CIGAR=1X;DP=105;DPB=105;DPRA=0;EPP=159.356;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2896;QR=1277;RO=33;RPL=0;RPP=159.356;RPPR=74.6689;RPR=72;RUN=1;SAF=72;SAP=159.356;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:2,17:2:77:17:679:-55.7179,0,-1.58863 0/1:39:9,30:9:354:30:1204:-96.8898,0,-20.4793 0/1:30:11,19:11:426:19:768:-60.4102,0,-29.6606 0/1:17:11,6:11:420:6:245:-17.312,0,-33.0289 dDocent_Contig_8723 44 . T G 1044.83 . AB=0.36;ABP=15.7786;AC=4;AF=0.5;AN=8;AO=37;CIGAR=1X1M1X;DP=106;DPB=106;DPRA=0;EPP=83.3548;EPPR=150.67;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1480;QR=2679;RO=68;RPL=0;RPP=83.3548;RPPR=150.67;RPR=37;RUN=1;SAF=37;SAP=83.3548;SAR=0;SRF=68;SRP=150.67;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:9:0,9:0:0:9:361:-32.854,-2.70927,0 0|0:22:21,1:21:826:1:41:0,-2.52809,-70.5602 0|1:55:39,16:39:1534:16:640:-41.3793,0,-121.755 0|1:20:8,11:8:319:11:438:-33.6473,0,-22.9491 dDocent_Contig_8724 53 . T C 385.773 . AB=0.375;ABP=8.43898;AC=3;AF=0.375;AN=8;AO=16;CIGAR=1X;DP=54;DPB=54;DPRA=0;EPP=37.7539;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=650;QR=1485;RO=38;RPL=16;RPP=37.7539;RPPR=85.5263;RPR=0;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:14:13,1:13:510:1:41:0,-0.119853,-42.1468 0/1:16:7,9:7:261:9:364:-28.3081,0,-19.0239 0/1:18:13,5:13:519:5:204:-13.3255,0,-41.6365 0/1:6:5,1:5:195:1:41:-2.28839,0,-16.1151 dDocent_Contig_8725 7 . C G 42.5385 . AB=0.173913;ABP=24.253;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=73;DPB=73;DPRA=1.38;EPP=11.6962;EPPR=152.842;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=136;QR=2648;RO=69;RPL=0;RPP=11.6962;RPPR=152.842;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=69;SRP=152.842;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:19,4:19:733:4:136:-5.65176,0,-59.3777 0/0:30:30,0:30:1143:0:0:0,-9.0309,-103.17 0/0:11:11,0:11:429:0:0:0,-3.31133,-38.9656 0/0:9:9,0:9:343:0:0:0,-2.70927,-31.2264 dDocent_Contig_8726 7 . C T 69.0323 . AB=0.192308;ABP=24.391;AC=2;AF=0.25;AN=8;AO=8;CIGAR=1X;DP=103;DPB=103;DPRA=0.676471;EPP=20.3821;EPPR=209.3;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=310;QR=3645;RO=95;RPL=0;RPP=20.3821;RPPR=209.3;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=95;SRP=209.3;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:34:34,0:34:1296:0:0:0,-10.235,-116.928 0/0:43:40,3:40:1539:3:117:0,-2.03391,-127.871 0/1:15:12,3:12:462:3:116:-6.30225,0,-37.4151 0/1:11:9,2:9:348:2:77:-3.99781,0,-28.369 dDocent_Contig_8727 152 . C G 270.096 . AB=0.366667;ABP=7.64277;AC=2;AF=0.25;AN=8;AO=11;CIGAR=1X;DP=62;DPB=62;DPRA=0.9375;EPP=26.8965;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=430;QR=2012;RO=51;RPL=0;RPP=26.8965;RPPR=113.755;RPR=11;RUN=1;SAF=0;SAP=26.8965;SAR=11;SRF=0;SRP=113.755;SRR=51;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:19:19,0:19:745:0:0:0,-5.71957,-67.3695 0/1:11:5,6:5:203:6:243:-18.9368,0,-15.3417 0/1:19:14,5:14:551:5:187:-11.4707,0,-44.2076 0/0:13:13,0:13:513:0:0:0,-3.91339,-46.5104 dDocent_Contig_8728 158 . C T 40.0107 . AB=0.166667;ABP=20.3821;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=35;DPB=35;DPRA=3.17647;EPP=9.52472;EPPR=64.083;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=116;QR=1236;RO=32;RPL=3;RPP=9.52472;RPPR=64.083;RPR=0;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=72.4974;SRR=32;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:15,3:15:581:3:116:-5.39886,0,-47.2116 0/0:4:4,0:4:154:0:0:0,-1.20412,-14.2331 0/0:8:8,0:8:313:0:0:0,-2.40824,-28.5343 0/0:5:5,0:5:188:0:0:0,-1.50515,-17.2819 dDocent_Contig_8729 180 . A G 173.847 . AB=0.32;ABP=10.0459;AC=3;AF=0.375;AN=8;AO=8;CIGAR=1X;DP=31;DPB=31;DPRA=1.38889;EPP=20.3821;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=323;QR=904;RO=23;RPL=8;RPP=20.3821;RPPR=52.9542;RPR=0;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=52.9542;SRR=23;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:9,5:9:357:5:202:-14.3474,0,-28.278 0/0:6:6,0:6:233:0:0:0,-1.80618,-21.3385 0/1:5:3,2:3:112:2:81:-6.18058,0,-8.94022 0/1:6:5,1:5:202:1:40:-2.1895,0,-16.7559 dDocent_Contig_8730 7 . C A 1629.43 . AB=0.0508475;ABP=209.779;AC=0;AF=0;AN=8;AO=6;CIGAR=2M1X3M;DP=210;DPB=196.667;DPRA=0;EPP=16.0391;EPPR=213.643;GTI=0;LEN=1;MEANALT=4;MQM=20.3333;MQMR=50.7113;NS=4;NUMALT=3;ODDS=2.77556e-17;PAIRED=0;PAIREDR=0.381443;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=3736;RO=97;RPL=0;RPP=16.0391;RPPR=213.643;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=97;SRP=213.643;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:49:24,7,15,3:24:921:7,15,3:273,561,78:-30.2492,-15.007,-79.6757,0,-44.2974,-62.2354,-32.181,-76.4845,-61.4561,-98.0315 0|0:69:32,6,22,3:32:1234:6,22,3:179,838,44:-39.2123,-35.3576,-117.886,0,-70.8558,-77.7163,-46.5955,-117.437,-82.0879,-130.019 0|0:41:24,2,13,0:24:926:2,13,0:78,498,0:-19.2175,-20.0171,-91.3769,0,-65.4763,-67.9763,-26.4422,-91.9789,-71.8897,-98.3935 0|0:51:17,0,33,0:17:655:0,33,0:0,1232,0:-81.6623,-86.7798,-135.867,0,-49.0268,-39.0928,-86.7798,-135.867,-49.0268,-135.867 dDocent_Contig_8734 40 . C T 565.007 . AB=0.44;ABP=4.57376;AC=1;AF=0.125;AN=8;AO=24;CIGAR=1X;DP=200;DPB=200;DPRA=1.06186;EPP=55.1256;EPPR=385.189;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.977273;PAO=0;PQA=0;PQR=0;PRO=0;QA=870;QR=6964;RO=176;RPL=0;RPP=55.1256;RPPR=385.189;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=176;SRP=385.189;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:50:28,22:28:1112:22:807:-57.8987,0,-85.315 0/0:74:74,0:74:2937:0:0:0,-22.2762,-264.429 0/0:53:51,2:51:2028:2:63:0,-9.97231,-176.725 0/0:23:23,0:23:887:0:0:0,-6.92369,-80.1242 dDocent_Contig_8735 28 . T C 1022.62 . AB=0.372549;ABP=17.4016;AC=2;AF=0.25;AN=8;AO=41;CIGAR=1X;DP=177;DPB=177;DPRA=0;EPP=92.0407;EPPR=298.331;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.804878;PAIREDR=0.970588;PAO=0;PQA=0;PQR=0;PRO=0;QA=1630;QR=5427;RO=136;RPL=0;RPP=92.0407;RPPR=298.331;RPR=41;RUN=1;SAF=41;SAP=92.0407;SAR=0;SRF=136;SRP=298.331;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:48:46,2:46:1813:2:82:0,-6.66976,-155.602 0/1:72:42,30:42:1684:30:1182:-84.9815,0,-130.108 0/1:30:22,8:22:891:8:326:-20.679,0,-71.4657 0/0:27:26,1:26:1039:1:40:0,-4.13213,-89.8088 dDocent_Contig_8736 13 . A G 108.883 . AB=0.0963855;ABP=120.453;AC=1;AF=0.125;AN=8;AO=8;CIGAR=2X;DP=101;DPB=101;DPRA=1.53704;EPP=20.3821;EPPR=178.9;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=54.0494;NS=4;NUMALT=2;ODDS=1.38778e-17;PAIRED=1;PAIREDR=0.962963;PAO=0;PQA=0;PQR=0;PRO=0;QA=321;QR=3165;RO=81;RPL=0;RPP=20.3821;RPPR=178.9;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=81;SRP=178.9;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:26:20,2,4:20:795:2,4:78,159:-7.07401,-6.68599,-70.6563,0,-58.1679,-63.3747 0|1:29:21,4,4:21:822:4,4:162,150:-7.05141,0,-65.7638,-1.10431,-54.6864,-66.8431 0|0:28:23,2,3:23:899:2,3:81,114:-2.06946,-2.29913,-73.6485,0,-65.2367,-71.0146 0|0:18:17,0,1:17:649:0,1:0,41:0,-5.11751,-55.5053,-1.49496,-52.2735,-51.9724 dDocent_Contig_8737 9 . A G 454.232 . AB=0.0740741;ABP=45.5551;AC=0;AF=0;AN=8;AO=2;CIGAR=1M1X11M;DP=63;DPB=62.0769;DPRA=0;EPP=7.35324;EPPR=72.4974;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=4;NUMALT=5;ODDS=0;PAIRED=0.5;PAIREDR=0.9375;PAO=0;PQA=0;PQR=0;PRO=0;QA=76;QR=1263;RO=32;RPL=0;RPP=7.35324;RPPR=72.4974;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:27:9,2,12,2,2,0:9:349:2,12,2,2,0:74,478,82,76,0:-36.6556,-33.3143,-61.3799,0,-22.6209,-25.0595,-32.5948,-55.2124,-21.9002,-60.6622,-33.1338,-55.7503,-22.4401,-55.0323,-61.1999,-39.3649,-61.982,-28.6718,-61.2643,-61.8019,-68.0338 0|0:18:12,2,2,0,0,2:12:474:2,2,0,0,2:71,82,0,0,82:-3.16491,-1.01078,-39.4025,0,-33.2348,-38.4122,-6.77727,-40.0045,-39.0143,-45.7844,-6.77727,-40.0045,-39.0143,-45.7844,-45.7844,0,-33.2348,-32.2435,-39.0143,-39.0143,-38.4122 0|0:5:1,0,3,1,0,0:1:40:0,3,1,0,0:0,115,39,0,0:-9.13188,-9.43291,-12.731,0,-3.30004,-2.39695,-6.22536,-9.52459,-0.0991147,-9.22356,-9.43291,-12.731,-3.30004,-9.52459,-12.731,-9.43291,-12.731,-3.30004,-9.52459,-12.731,-12.731 0|0:13:10,0,2,1,0,0:10:400:0,2,1,0,0:0,81,41,0,0:-3.66557,-6.67587,-39.6216,0,-32.9418,-32.3398,-3.29014,-36.2368,-29.5568,-35.9358,-6.67587,-39.6216,-32.9418,-36.2368,-39.6216,-6.67587,-39.6216,-32.9418,-36.2368,-39.6216,-39.6216 dDocent_Contig_8739 8 . T C 2561.56 . AB=0.722689;ABP=54.268;AC=4;AF=0.5;AN=8;AO=86;CIGAR=1X;DP=119;DPB=119;DPRA=0;EPP=189.757;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.969697;PAO=0;PQA=0;PQR=0;PRO=0;QA=3312;QR=1258;RO=33;RPL=0;RPP=189.757;RPPR=74.6689;RPR=86;RUN=1;SAF=86;SAP=189.757;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:42:10,32:10:374:32:1231:-98.4408,0,-21.3636 0/1:37:13,24:13:504:24:925:-72.4276,0,-34.5708 0/1:26:4,22:4:146:22:846:-68.6361,0,-5.6698 0/1:14:6,8:6:234:8:310:-24.0492,0,-17.2167 dDocent_Contig_8741 8 . T C 90.907 . AB=0.145833;ABP=55.3066;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=114;DPB=114;DPRA=1.32653;EPP=20.3821;EPPR=233.186;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.2264;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.971698;PAO=0;PQA=0;PQR=0;PRO=0;QA=312;QR=4048;RO=106;RPL=0;RPP=20.3821;RPPR=233.186;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=106;SRP=233.186;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:48:41,7:41:1575:7:273:-10.4886,0,-127.569 0/0:34:34,0:34:1287:0:0:0,-10.235,-113.039 0/0:17:16,1:16:612:1:39:0,-1.22095,-51.5223 0/0:15:15,0:15:574:0:0:0,-4.51545,-52.0008 dDocent_Contig_8742 98 . N T 37.9985 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=40;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:40:-3.7987,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_8744 17 . T A 391.772 . AB=0.231579;ABP=62.4629;AC=4;AF=0.5;AN=8;AO=22;CIGAR=1X;DP=95;DPB=95;DPRA=0;EPP=50.7827;EPPR=161.528;GTI=0;LEN=1;MEANALT=1;MQM=40;MQMR=58.8493;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.972603;PAO=0;PQA=0;PQR=0;PRO=0;QA=869;QR=2936;RO=73;RPL=0;RPP=50.7827;RPPR=161.528;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=73;SRP=161.528;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:35:22,13:22:884:13:508:-32.341,0,-65.7159 0/1:27:23,4:23:927:4:160:-5.54259,0,-75.6025 0/1:21:19,2:19:757:2:82:-0.795993,0,-62.1253 0/1:12:9,3:9:368:3:119:-6.68482,0,-29.8692 dDocent_Contig_8745 10 . G T 428.324 . AB=0.171975;ABP=149.744;AC=4;AF=0.5;AN=8;AO=27;CIGAR=1X;DP=157;DPB=157;DPRA=0;EPP=61.6401;EPPR=285.302;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1067;QR=5210;RO=130;RPL=0;RPP=61.6401;RPPR=285.302;RPR=27;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=130;SRP=285.302;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:74:62,12:62:2489:12:481:-21.3644,0,-201.868 0/1:54:44,10:44:1769:10:399:-20.0134,0,-143.168 0/1:23:20,3:20:789:3:107:-3.05776,0,-64.3939 0/1:6:4,2:4:163:2:80:-5.78539,0,-13.2522 dDocent_Contig_8746 75 . A G 112.839 . AB=0.363636;ABP=6.56362;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X3M1X;DP=45;DPB=45;DPRA=2.86957;EPP=20.3821;EPPR=79.0118;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.75;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=212;QR=1073;RO=35;RPL=8;RPP=20.3821;RPPR=79.0118;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:22:13,8:13:412:8:212:-12.6811,0,-30.719 0|0:9:8,0:8:232:0:0:0,-2.40824,-21.0881 0|0:13:13,0:13:401:0:0:0,-3.91339,-36.3906 0|0:1:1,0:1:28:0:0:0,-0.30103,-2.79973 dDocent_Contig_8747 8 . T C 32.4427 . AB=0.166667;ABP=20.3821;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1M1X;DP=138;DPB=138;DPRA=0.45;EPP=9.52472;EPPR=280.959;GTI=0;LEN=1;MEANALT=1;MQM=42;MQMR=59.7266;NS=4;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=0.875;PAO=0;PQA=0;PQR=0;PRO=0;QA=116;QR=4916;RO=128;RPL=0;RPP=9.52472;RPPR=280.959;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=128;SRP=280.959;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:36:36,0,0,0:36:1385:0,0,0:0,0,0:0,-10.8371,-124.934,-10.8371,-124.934,-124.934,-10.8371,-124.934,-124.934,-124.934 0|0:57:51,3,0,3:51:1950:3,0,3:116,0,115:0,-5.82261,-164.863,-15.3525,-165.767,-175.295,-5.91528,-156.328,-165.856,-164.953 0|0:27:26,1,0,0:26:1002:1,0,0:39,0,0:0,-4.70421,-87.0674,-7.82678,-87.3684,-90.147,-7.82678,-87.3684,-90.147,-90.147 0|1:18:15,0,3,0:15:579:0,3,0:0,116,0:-4.943,-9.45845,-57.0228,0,-47.937,-47.0339,-9.45845,-57.0228,-47.937,-57.0228 dDocent_Contig_8748 10 . C G 728.552 . AB=0.428571;ABP=7.04303;AC=4;AF=0.5;AN=8;AO=39;CIGAR=1M3D1X;DP=91;DPB=65.8;DPRA=0;EPP=87.6977;EPPR=109.412;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.897436;PAIREDR=0.979592;PAO=0;PQA=0;PQR=0;PRO=0;QA=1178;QR=1897;RO=49;RPL=0;RPP=87.6977;RPPR=109.412;RPR=39;RUN=1;SAF=39;SAP=87.6977;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:21:17,4,0:17:660:4,0:105,0:-3.38686,0,-53.4156,-8.50437,-54.6197,-62.8378 0|1:29:12,14,3:12:466:14,3:459,116:-33.4146,0,-34.0787,-27.4883,-28.7652,-64.9049 0|1:19:13,6,0:13:498:6,0:147,0:-7.75005,0,-39.4481,-11.6634,-41.2543,-52.6293 0|1:22:7,15,0:7:273:15,0:467,0:-35.6972,0,-18.3154,-37.8044,-22.8308,-60.2706 dDocent_Contig_8749 60 . C A 314.8 . AB=0.611111;ABP=4.9405;AC=1;AF=0.125;AN=8;AO=11;CIGAR=1X;DP=65;DPB=65;DPRA=1.14894;EPP=26.8965;EPPR=120.27;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=425;QR=2183;RO=54;RPL=11;RPP=26.8965;RPPR=120.27;RPR=0;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:36:36,0:36:1464:0:0:0,-10.8371,-132.002 0/0:10:10,0:10:397:0:0:0,-3.0103,-36.0857 0/1:18:7,11:7:281:11:425:-33.1784,0,-20.244 0/0:1:1,0:1:41:0:0:0,-0.30103,-4.09457 dDocent_Contig_8750 13 . G A 128.964 . AB=0.0540541;ABP=66.922;AC=0;AF=0;AN=8;AO=2;CIGAR=1X2M1D6M;DP=112;DPB=110.7;DPRA=1.5102;EPP=7.35324;EPPR=215.815;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=54.1531;NS=4;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0.469388;PAO=0;PQA=0;PQR=0;PRO=0;QA=79;QR=3855;RO=98;RPL=0;RPP=7.35324;RPPR=215.815;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=98;SRP=215.815;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:26:19,0,6:19:737:0,6:0,242:-14.2912,-20.0108,-78.8175,0,-58.8628,-57.0566 0|0:37:32,2,3:32:1263:2,3:79,122:-0.437211,-3.57383,-106.286,0,-96.8238,-102.422 0|0:32:31,0,1:31:1224:0,1:0,40:0,-9.33193,-109.815,-5.63728,-106.52,-106.219 0|0:17:16,0,1:16:631:0,1:0,41:0,-4.81648,-56.4237,-1.02294,-53.0386,-52.7376 dDocent_Contig_8751 11 . G A 30.7078 . AB=0.181818;ABP=12.6832;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X;DP=92;DPB=92;DPRA=0.407407;EPP=7.35324;EPPR=198.443;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=3522;RO=90;RPL=0;RPP=7.35324;RPPR=198.443;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=90;SRP=198.443;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:9,2:9:362:2:82:-4.46835,0,-29.6324 0/0:33:33,0:33:1297:0:0:0,-9.93399,-116.982 0/0:34:34,0:34:1317:0:0:0,-10.235,-118.787 0/0:14:14,0:14:546:0:0:0,-4.21442,-49.4789 dDocent_Contig_8752 106 . N G 121.143 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=4;CIGAR=2X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=7.37776;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=131;QR=0;RO=0;RPL=0;RPP=11.6962;RPPR=0;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. 1|1:4:0,4:0:0:4:131:-12.1141,-1.20412,0 dDocent_Contig_8754 30 . T G 139.438 . AB=0.5;ABP=3.0103;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=61;DPB=61;DPRA=0.588235;EPP=13.8677;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=203;QR=2260;RO=56;RPL=0;RPP=13.8677;RPPR=124.613;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:22:22,0:22:888:0:0:0,-6.62266,-80.2283 0/0:7:7,0:7:285:0:0:0,-2.10721,-26.0242 0/0:22:22,0:22:886:0:0:0,-6.62266,-80.048 0/1:10:5,5:5:201:5:203:-15.6428,0,-15.4602 dDocent_Contig_8755 17 . A T 172.119 . AB=0.214286;ABP=32.7905;AC=2;AF=0.25;AN=8;AO=9;CIGAR=2X;DP=67;DPB=67;DPRA=1.68;EPP=22.5536;EPPR=128.956;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=361;QR=2317;RO=58;RPL=0;RPP=22.5536;RPPR=128.956;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:24:18,6:18:727:6:241:-14.8405,0,-58.5298 0|1:18:15,3:15:607:3:120:-5.76936,0,-49.5495 0|0:19:19,0:19:760:0:0:0,-5.71957,-68.7229 0|0:6:6,0:6:223:0:0:0,-1.80618,-20.4196 dDocent_Contig_8756 18 . C A 2564.93 . AB=0.4375;ABP=5.72464;AC=5;AF=0.625;AN=8;AO=80;CIGAR=1X;DP=125;DPB=125;DPRA=0;EPP=176.728;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3164;QR=1761;RO=45;RPL=0;RPP=176.728;RPPR=100.727;RPR=80;RUN=1;SAF=80;SAP=176.728;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:45:0,45:0:0:45:1813:-163.376,-13.5464,0 0/1:26:21,5:21:838:5:181:-8.80724,0,-67.9012 0/1:29:11,18:11:417:18:696:-54.2297,0,-29.1337 0/1:25:13,12:13:506:12:474:-35.4786,0,-38.3512 dDocent_Contig_8757 140 . G A 98.0847 . AB=0.571429;ABP=3.32051;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=67;DPB=67;DPRA=0.35;EPP=11.6962;EPPR=139.813;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=144;QR=2142;RO=63;RPL=0;RPP=11.6962;RPPR=139.813;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=139.813;SRR=63;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:7:3,4:3:104:4:144:-11.2064,0,-7.59588 0/0:22:22,0:22:730:0:0:0,-6.62266,-66.0087 0/0:20:20,0:20:691:0:0:0,-6.0206,-62.5122 0/0:18:18,0:18:617:0:0:0,-5.41854,-55.8524 dDocent_Contig_8758 125 . G A 280.351 . AB=0.535714;ABP=3.32051;AC=1;AF=0.125;AN=8;AO=15;CIGAR=1X;DP=55;DPB=55;DPRA=3.11111;EPP=35.5824;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=421;QR=1330;RO=40;RPL=0;RPP=35.5824;RPPR=89.8692;RPR=15;RUN=1;SAF=0;SAP=35.5824;SAR=15;SRF=0;SRP=89.8692;SRR=40;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:19:19,0:19:622:0:0:0,-5.71957,-56.288 0/1:28:13,15:13:442:15:421:-29.7338,0,-31.6774 0/0:6:6,0:6:198:0:0:0,-1.80618,-18.1444 0/0:2:2,0:2:68:0:0:0,-0.60206,-6.45788 dDocent_Contig_8759 57 . C T 150.983 . AB=0.210526;ABP=30.668;AC=2;AF=0.25;AN=8;AO=11;CIGAR=1X;DP=93;DPB=93;DPRA=1.73333;EPP=26.8965;EPPR=181.071;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=443;QR=3230;RO=82;RPL=11;RPP=26.8965;RPPR=181.071;RPR=0;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=82;SRP=181.071;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:22,5:22:886:5:201:-10.3427,0,-71.9205 0/1:11:8,3:8:306:3:123:-8.15346,0,-24.5857 0/0:40:37,3:37:1449:3:119:0,-0.946185,-119.555 0/0:15:15,0:15:589:0:0:0,-4.51545,-53.3393 dDocent_Contig_8760 26 . A G 138.242 . AB=0.152778;ABP=78.4086;AC=3;AF=0.375;AN=8;AO=13;CIGAR=1X;DP=129;DPB=129;DPRA=0;EPP=31.2394;EPPR=252.73;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=505;QR=4464;RO=115;RPL=0;RPP=31.2394;RPPR=252.73;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=115;SRP=252.73;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:57:55,2:55:2111:2:76:0,-9.9439,-182.992 0/1:51:42,8:42:1646:8:310:-12.8222,0,-132.946 0/1:11:10,1:10:391:1:41:-0.783237,0,-32.2364 0/1:10:8,2:8:316:2:78:-4.393,0,-25.7964 dDocent_Contig_8761 116 . A G 578.219 . AB=0.392857;ABP=8.59409;AC=4;AF=0.5;AN=8;AO=22;CIGAR=1X;DP=56;DPB=56;DPRA=0;EPP=50.7827;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.818182;PAIREDR=0.941176;PAO=0;PQA=0;PQR=0;PRO=0;QA=895;QR=1236;RO=34;RPL=22;RPP=50.7827;RPPR=76.8404;RPR=0;RUN=1;SAF=0;SAP=50.7827;SAR=22;SRF=0;SRP=76.8404;SRR=34;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:9,4:9:344:4:164:-11.2365,0,-27.4039 0/1:8:5,3:5:175:3:123:-9.05655,0,-13.6836 0/1:23:16,7:16:582:7:282:-18.8293,0,-45.784 0/1:12:4,8:4:135:8:326:-26.0975,0,-8.8696 dDocent_Contig_8762 45 . G C 265.594 . AB=0.384615;ABP=6.01695;AC=1;AF=0.125;AN=8;AO=11;CIGAR=1X;DP=99;DPB=99;DPRA=1.10638;EPP=26.8965;EPPR=191.928;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.6322;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.91954;PAO=0;PQA=0;PQR=0;PRO=0;QA=437;QR=3446;RO=87;RPL=0;RPP=26.8965;RPPR=191.928;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=87;SRP=191.928;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:43:42,0:42:1675:0:0:0,-12.6433,-150.595 0/1:26:16,10:16:629:10:397:-28.2583,0,-49.1113 0/0:26:25,1:25:981:1:40:0,-3.8311,-84.2368 0/0:4:4,0:4:161:0:0:0,-1.20412,-14.8749 dDocent_Contig_8763 1 . N G 135.972 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=140;QR=0;RO=0;RPL=0;RPP=11.6962;RPPR=0;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1:0,1:0:0:1:35:-3.49863,-0.30103,0 1/1:3:0,3:0:0:3:105:-9.79616,-0.90309,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_8764 8 . T A 498.778 . AB=0.0769231;ABP=63.6445;AC=0;AF=0;AN=8;AO=3;CIGAR=1M1X1M1X;DP=140;DPB=135.25;DPRA=0;EPP=9.52472;EPPR=196.271;GTI=0;LEN=1;MEANALT=4;MQM=54;MQMR=58.9213;NS=4;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=0.966292;PAO=0;PQA=0;PQR=0;PRO=0;QA=108;QR=3405;RO=89;RPL=0;RPP=9.52472;RPPR=196.271;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=89;SRP=196.271;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:49:35,10,0,1,2:35:1342:10,0,1,2:383,0,32,76:-20.8036,0,-102.397,-31.3396,-105.407,-136.649,-28.7719,-102.839,-134.081,-133.78,-30.0014,-104.044,-135.284,-132.715,-134.682 0|0:26:18,0,0,7,0:18:681:0,0,7,0:0,0,263,0:-16.028,-21.4465,-77.274,-21.4465,-77.274,-77.274,0,-55.8157,-55.8157,-53.7085,-21.4465,-77.274,-77.274,-55.8157,-77.274 0|0:39:18,9,3,7,2:18:684:9,3,7,2:268,108,266,79:-16.3295,-1.24846,-54.6482,-12.9492,-48.5654,-68.1694,0,-35.6334,-47.3442,-54.0317,-17.7981,-53.4082,-65.1206,-52.1875,-73.312 0|0:26:18,0,0,3,4:18:698:0,0,3,4:0,0,116,154:-4.10548,-9.52402,-66.9211,-9.52402,-66.9211,-66.9211,0,-57.4352,-57.4352,-56.5321,-1.67573,-59.0295,-59.0295,-49.5463,-57.8254 dDocent_Contig_8767 36 . A G 265.883 . AB=0.357143;ABP=7.97367;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X;DP=73;DPB=73;DPRA=1.24444;EPP=24.725;EPPR=139.813;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=402;QR=2494;RO=63;RPL=0;RPP=24.725;RPPR=139.813;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=63;SRP=139.813;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:18,10:18:718:10:402:-28.1112,0,-56.5161 ./.:.:.:.:.:.:.:. 0/0:32:32,0:32:1270:0:0:0,-9.63296,-114.573 0/0:13:13,0:13:506:0:0:0,-3.91339,-45.8835 dDocent_Contig_8769 11 . C T 228.057 . AB=0.234043;ABP=31.8863;AC=2;AF=0.25;AN=8;AO=11;CIGAR=1X2M1X;DP=87;DPB=87;DPRA=1.175;EPP=26.8965;EPPR=168.042;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=440;QR=2989;RO=76;RPL=0;RPP=26.8965;RPPR=168.042;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=76;SRP=168.042;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:33:33,0:33:1295:0:0:0,-9.93399,-116.821 0|1:19:14,5:14:548:5:196:-12.2937,0,-43.9449 0|1:28:22,6:22:878:6:244:-13.91,0,-70.9018 0|0:7:7,0:7:268:0:0:0,-2.10721,-24.4783 dDocent_Contig_8770 8 . T C 1412.21 . AB=0.514851;ABP=3.2038;AC=4;AF=0.5;AN=8;AO=52;CIGAR=1X;DP=101;DPB=101;DPRA=0;EPP=115.927;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=0.692308;PAIREDR=0.836735;PAO=0;PQA=0;PQR=0;PRO=0;QA=1974;QR=1851;RO=49;RPL=0;RPP=115.927;RPPR=109.412;RPR=52;RUN=1;SAF=52;SAP=115.927;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:10,21:10:356:21:814:-64.2533,0,-23.0391 0/1:21:12,9:12:457:9:321:-22.9036,0,-35.1556 0/1:27:18,9:18:694:9:345:-23.2797,0,-54.6665 0/1:22:9,13:9:344:13:494:-38.1821,0,-24.6948 dDocent_Contig_8771 9 . A G 52.4081 . AB=0.0649351;ABP=129.604;AC=1;AF=0.125;AN=8;AO=16;CIGAR=2X;DP=250;DPB=250;DPRA=2.04762;EPP=37.7539;EPPR=480.734;GTI=0;LEN=1;MEANALT=2;MQM=58;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.875;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=611;QR=8411;RO=220;RPL=0;RPP=37.7539;RPPR=480.734;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=220;SRP=480.734;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:138:120,11,7:120:4607:11,7:417,268:0,-1.93677,-376.802,-14.1281,-358.119,-390.201 0|0:45:39,1,5:39:1486:1,5:39,191:-3.92445,-12.4574,-134.049,0,-118.678,-120.379 0|0:35:35,0,0:35:1334:0,0:0,0:0,-10.536,-120.347,-10.536,-120.347,-120.347 0|1:32:26,4,2:26:984:4,2:155,78:-4.71279,0,-79.4475,-6.12523,-74.239,-86.1822 dDocent_Contig_8773 25 . C T 320.95 . AB=0.267857;ABP=29.2231;AC=2;AF=0.333333;AN=6;AO=16;CIGAR=1X;DP=73;DPB=73;DPRA=0;EPP=37.7539;EPPR=126.784;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=607;QR=2243;RO=57;RPL=0;RPP=37.7539;RPPR=126.784;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:17:16,1:16:621:1:32:0,-1.9182,-53.0197 0/1:36:31,5:31:1235:5:196:-7.1783,0,-100.587 0/1:20:10,10:10:387:10:379:-28.4396,0,-29.1636 ./.:.:.:.:.:.:.:. dDocent_Contig_8774 22 . G T 689.759 . AB=0.0714286;ABP=47.6806;AC=0;AF=0;AN=8;AO=2;CIGAR=1X3M1X2M1X;DP=96;DPB=96;DPRA=0;EPP=7.35324;EPPR=117.148;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.921875;PAO=0;PQA=0;PQR=0;PRO=0;QA=73;QR=2414;RO=64;RPL=0;RPP=7.35324;RPPR=141.985;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=61;SRP=117.148;SRR=3;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:17:10,0,7:10:369:0,7:0,274:-19.9101,-22.9204,-53.0839,0,-30.5454,-28.4382 0|0:33:22,0,11:22:832:0,11:0,404:-26.7668,-33.3895,-101.596,0,-68.5777,-65.2663 0|0:28:21,2,5:21:804:2,5:73,198:-9.99704,-10.3642,-75.7316,0,-60.0345,-64.4911 0|0:18:11,0,7:11:409:0,7:0,275:-19.6999,-23.0112,-56.4686,0,-33.8418,-31.7346 dDocent_Contig_8776 43 . A T 113.255 . AB=0.263158;ABP=12.2676;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=49;DPB=49;DPRA=1.9;EPP=13.8677;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=204;QR=1745;RO=44;RPL=0;RPP=13.8677;RPPR=98.5551;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:8:8,0:8:313:0:0:0,-2.40824,-28.5331 0/1:19:14,5:14:565:5:204:-13.0245,0,-45.4735 0/0:16:16,0:16:635:0:0:0,-4.81648,-57.4847 0/0:6:6,0:6:232:0:0:0,-1.80618,-21.2457 dDocent_Contig_8777 98 . N A 103.49 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=104;QR=0;RO=0;RPL=3;RPP=9.52472;RPPR=0;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:1:0,1:0:0:1:34:-3.39891,-0.30103,0 1/1:2:0,2:0:0:2:70:-6.6474,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_8778 1 . N G 735 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=20;CIGAR=1X;DP=20;DPB=20;DPRA=0;EPP=46.4397;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=799;QR=0;RO=0;RPL=0;RPP=46.4397;RPPR=0;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:120:-11.1873,-0.90309,0 1/1:13:0,13:0:0:13:522:-47.3268,-3.91339,0 ./.:.:.:.:.:.:.:. 1/1:4:0,4:0:0:4:157:-14.5085,-1.20412,0 dDocent_Contig_8779 33 . G A 95.2469 . AB=0.363636;ABP=4.78696;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=53;DPB=53;DPRA=0.827586;EPP=13.8677;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=191;QR=1857;RO=48;RPL=0;RPP=13.8677;RPPR=107.241;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:7,4:7:276:4:154:-10.922,0,-21.8971 0/0:13:12,1:12:442:1:37:0,-0.215561,-36.4117 0/0:22:22,0:22:858:0:0:0,-6.62266,-77.5335 0/0:7:7,0:7:281:0:0:0,-2.10721,-25.6626 dDocent_Contig_8780 20 . T A 736.423 . AB=0.20442;ABP=140.365;AC=3;AF=0.375;AN=8;AO=39;CIGAR=1X;DP=210;DPB=210;DPRA=0;EPP=87.6977;EPPR=374.332;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.994152;PAO=0;PQA=0;PQR=0;PRO=0;QA=1552;QR=6807;RO=171;RPL=0;RPP=87.6977;RPPR=374.332;RPR=39;RUN=1;SAF=39;SAP=87.6977;SAR=0;SRF=171;SRP=374.332;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:69:59,10:59:2365:10:393:-14.9543,0,-192.233 0/1:63:47,16:47:1860:16:635:-38.5205,0,-148.631 0/1:49:38,11:38:1515:11:444:-25.5653,0,-121.841 0/0:29:27,2:27:1067:2:80:0,-1.13829,-88.7305 dDocent_Contig_8781 21 . G A 1891.44 . AB=0.432258;ABP=9.18849;AC=3;AF=0.375;AN=8;AO=67;CIGAR=1X;DP=177;DPB=177;DPRA=2.34848;EPP=148.499;EPPR=241.872;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2670;QR=4389;RO=110;RPL=0;RPP=148.499;RPPR=241.872;RPR=67;RUN=1;SAF=67;SAP=148.499;SAR=0;SRF=110;SRP=241.872;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:77:29,48:29:1142:48:1913:-149.19,0,-79.8872 0/1:57:41,16:41:1655:16:644:-41.1346,0,-132.017 0/1:21:18,3:18:733:3:113:-4.21678,0,-59.9715 0/0:22:22,0:22:859:0:0:0,-6.62266,-77.6229 dDocent_Contig_8782 7 . C A 168.037 . AB=0.236842;ABP=25.8679;AC=2;AF=0.25;AN=8;AO=10;CIGAR=1X2M1X;DP=87;DPB=87;DPRA=0.826667;EPP=24.725;EPPR=170.214;GTI=0;LEN=1;MEANALT=1;MQM=59.1;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=380;QR=2891;RO=77;RPL=0;RPP=24.725;RPPR=170.214;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=77;SRP=170.214;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:11:5,6:5:192:6:229:-17.6645,0,-14.3388 0|1:27:24,3:24:902:3:114:-2.50441,0,-73.3693 0|0:25:25,0:25:934:0:0:0,-7.52575,-84.3754 0|0:24:23,1:23:863:1:37:0,-3.54167,-74.3055 dDocent_Contig_8783 9 . T C 3465.97 . AB=0.442907;ABP=11.1928;AC=4;AF=0.5;AN=8;AO=128;CIGAR=1X;DP=289;DPB=289;DPRA=0;EPP=280.959;EPPR=352.617;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.8385;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.993789;PAO=0;PQA=0;PQR=0;PRO=0;QA=4887;QR=6152;RO=161;RPL=0;RPP=280.959;RPPR=352.617;RPR=128;RUN=1;SAF=128;SAP=280.959;SAR=0;SRF=161;SRP=352.617;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:109:33,76:33:1265:76:2922:-230.332,0,-81.329 0/1:128:103,25:103:3938:25:946:-46.9196,0,-315.426 0/1:41:19,22:19:717:22:826:-62.3133,0,-52.515 0/1:11:6,5:6:232:5:193:-14.43,0,-17.9376 dDocent_Contig_8784 48 . T C 280.143 . AB=0.241379;ABP=36.7056;AC=3;AF=0.375;AN=8;AO=16;CIGAR=1X;DP=89;DPB=89;DPRA=0;EPP=37.7539;EPPR=161.528;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=627;QR=2892;RO=73;RPL=0;RPP=37.7539;RPPR=161.528;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=73;SRP=161.528;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:31:29,2:29:1154:2:81:0,-1.6462,-96.4558 0/1:21:16,5:16:635:5:203:-12.3312,0,-51.1605 0/1:10:4,6:4:138:6:241:-19.0555,0,-9.7457 0/1:27:24,3:24:965:3:102:-1.38449,0,-79.0206 dDocent_Contig_8785 10 . C T 116.905 . AB=0.230769;ABP=19.3799;AC=2;AF=0.25;AN=8;AO=6;CIGAR=1X;DP=59;DPB=59;DPRA=0.787879;EPP=16.0391;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=237;QR=2072;RO=53;RPL=0;RPP=16.0391;RPPR=118.098;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:30:30,0:30:1174:0:0:0,-9.0309,-105.945 0/0:3:3,0:3:109:0:0:0,-0.90309,-10.1677 0/1:16:11,5:11:435:5:198:-13.3811,0,-34.6884 0/1:10:9,1:9:354:1:39:-0.886264,0,-29.2112 dDocent_Contig_8786 9 . T A 5255.44 . AB=0.780952;ABP=146.989;AC=5;AF=0.625;AN=8;AO=174;CIGAR=1X;DP=220;DPB=220;DPRA=0;EPP=380.846;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.971264;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6590;QR=1701;RO=46;RPL=0;RPP=380.846;RPPR=102.898;RPR=174;RUN=1;SAF=174;SAP=380.846;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:53:18,35:18:662:35:1342:-105.109,0,-43.9523 1/1:10:0,10:0:0:10:380:-34.5525,-3.0103,0 0/1:78:20,58:20:740:58:2213:-175.914,0,-43.4476 0/1:79:8,71:8:299:71:2655:-215.363,0,-3.48327 dDocent_Contig_8787 37 . T A 188.897 . AB=0.258065;ABP=18.771;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=99;DPB=99;DPRA=1.36765;EPP=20.3821;EPPR=200.614;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.912088;PAO=0;PQA=0;PQR=0;PRO=0;QA=325;QR=3626;RO=91;RPL=0;RPP=20.3821;RPPR=200.614;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=91;SRP=200.614;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:23,8:23:916:8:325:-20.2875,0,-73.4147 0/0:39:39,0:39:1568:0:0:0,-11.7402,-141.352 0/0:26:26,0:26:1047:0:0:0,-7.82678,-94.5217 0/0:3:3,0:3:95:0:0:0,-0.90309,-8.86154 dDocent_Contig_8788 31 . G T 31.1139 . AB=0.106383;ABP=66.2602;AC=1;AF=0.125;AN=8;AO=19;CIGAR=1X;DP=793;DPB=793;DPRA=0;EPP=44.2683;EPPR=1595.61;GTI=0;LEN=1;MEANALT=1.75;MQM=60;MQMR=59.8127;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.96749;PAO=0;PQA=0;PQR=0;PRO=0;QA=764;QR=29910;RO=769;RPL=0;RPP=44.2683;RPPR=1672.87;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=760;SRP=1595.61;SRR=9;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:355:347,7:347:13522:7:278:0,-81.5821,-1190.67 0/0:317:310,5:310:12001:5:204:0,-76.4288,-1057.05 0/0:74:72,2:72:2791:2:78:0,-14.8734,-243.924 0/1:47:40,5:40:1596:5:204:-4.81003,0,-128.415 dDocent_Contig_8789 9 . G A 52.0538 . AB=0.214286;ABP=12.937;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=42;DPB=42;DPRA=1.5;EPP=9.52472;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=116;QR=1482;RO=39;RPL=0;RPP=9.52472;RPPR=87.6977;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:11,3:11:426:3:116:-6.60328,0,-34.4803 0/0:12:12,0:12:458:0:0:0,-3.61236,-41.5698 0/0:11:11,0:11:412:0:0:0,-3.31133,-37.4281 0/0:5:5,0:5:186:0:0:0,-1.50515,-17.1011 dDocent_Contig_8790 9 . C G 39.7564 . AB=0.142857;ABP=49.5419;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=170;DPB=170;DPRA=1.07317;EPP=18.2106;EPPR=356.96;GTI=0;LEN=1;MEANALT=1;MQM=47;MQMR=58.1472;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=235;QR=6247;RO=163;RPL=0;RPP=18.2106;RPPR=356.96;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=163;SRP=356.96;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:71:71,0:71:2741:0:0:0,-21.3731,-246.87 0/0:46:45,1:45:1717:1:34:0,-10.4686,-150.941 0/1:42:36,6:36:1369:6:201:-5.67457,0,-110.709 0/0:11:11,0:11:420:0:0:0,-3.31133,-38.0211 dDocent_Contig_8791 9 . C A 65.4394 . AB=0.75;ABP=5.18177;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=66;DPB=66;DPRA=0.193548;EPP=9.52472;EPPR=139.813;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=101;QR=2425;RO=63;RPL=0;RPP=9.52472;RPPR=139.813;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=63;SRP=139.813;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:16:16,0:16:621:0:0:0,-4.81648,-56.2301 0/0:23:23,0:23:879:0:0:0,-6.92369,-79.4266 0/0:23:23,0:23:887:0:0:0,-6.92369,-80.1497 0/1:4:1,3:1:38:3:101:-8.21605,0,-2.59315 dDocent_Contig_8792 10 . G T 447.759 . AB=0.253165;ABP=44.818;AC=3;AF=0.375;AN=8;AO=20;CIGAR=1X;DP=94;DPB=94;DPRA=1.75556;EPP=46.4397;EPPR=163.699;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.75;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=802;QR=2964;RO=74;RPL=0;RPP=46.4397;RPPR=163.699;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=74;SRP=163.699;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:15:15,0:15:595:0:0:0,-4.51545,-53.8825 0/1:38:24,14:24:967:14:561:-39.3936,0,-75.8869 0/1:32:29,3:29:1169:3:118:-1.36955,0,-95.8545 0/1:9:6,3:6:233:3:123:-8.75552,0,-18.6291 dDocent_Contig_8793 108 . G A 180.234 . AB=0.133333;ABP=20.5268;AC=0;AF=0;AN=8;AO=2;CIGAR=1X2M1X6M;DP=50;DPB=50;DPRA=0;EPP=7.35324;EPPR=65.983;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=4;NUMALT=7;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=68;QR=880;RO=29;RPL=0;RPP=7.35324;RPPR=65.983;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=65.983;SRR=29;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:18:13,0,2,0,0,0,1,2:13:378:0,2,0,0,0,1,2:0,56,0,0,0,5,70:-1.84071,-5.7541,-35.8756,-1.30519,-31.4391,-30.837,-5.7541,-35.8756,-31.4391,-35.8756,-5.7541,-35.8756,-31.4391,-35.8756,-35.8756,-5.7541,-35.8756,-31.4391,-35.8756,-35.8756,-35.8756,-5.65811,-35.7403,-31.3056,-35.7403,-35.7403,-35.7403,-35.4393,0,-30.1718,-25.7341,-30.1718,-30.1718,-30.1718,-30.0377,-29.5697 0|0:15:7,2,0,0,0,0,5,0:7:215:2,0,0,0,0,5,0:68,0,0,0,0,156,0:-10.4127,-6.99695,-23.6316,-12.52,-24.2337,-29.7537,-12.52,-24.2337,-29.7537,-29.7537,-12.52,-24.2337,-29.7537,-29.7537,-29.7537,-12.52,-24.2337,-29.7537,-29.7537,-29.7537,-29.7537,0,-11.7007,-17.2232,-17.2232,-17.2232,-17.2232,-15.718,-12.52,-24.2337,-29.7537,-29.7537,-29.7537,-29.7537,-17.2232,-29.7537 0|0:12:9,0,0,0,2,0,1,0:9:287:0,0,0,2,0,1,0:0,0,0,68,0,35,0:-2.80001,-5.50928,-28.6056,-5.50928,-28.6056,-28.6056,-5.50928,-28.6056,-28.6056,-28.6056,0,-23.0867,-23.0867,-23.0867,-22.4846,-5.50928,-28.6056,-28.6056,-28.6056,-23.0867,-28.6056,-2.65822,-25.7556,-25.7556,-25.7556,-20.2358,-25.7556,-25.4546,-5.50928,-28.6056,-28.6056,-28.6056,-23.0867,-28.6056,-25.7556,-28.6056 0|0:5:0,0,0,2,0,2,0,0:0:0:0,0,2,0,2,0,0:0,0,64,0,62,0,0:-10.1209,-10.1209,-10.1209,-10.1209,-10.1209,-10.1209,-4.96318,-4.96318,-4.96318,-4.36112,-10.1209,-10.1209,-10.1209,-4.96318,-10.1209,-5.14973,-5.14973,-5.14973,0,-5.14973,-4.54767,-10.1209,-10.1209,-10.1209,-4.96318,-10.1209,-5.14973,-10.1209,-10.1209,-10.1209,-10.1209,-4.96318,-10.1209,-5.14973,-10.1209,-10.1209 dDocent_Contig_8794 7 . C T 357.457 . AB=0.280702;ABP=26.8203;AC=3;AF=0.375;AN=8;AO=16;CIGAR=1X;DP=84;DPB=84;DPRA=0.703704;EPP=37.7539;EPPR=148.499;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.4375;PAIREDR=0.835821;PAO=0;PQA=0;PQR=0;PRO=0;QA=621;QR=2554;RO=67;RPL=0;RPP=37.7539;RPPR=148.499;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=67;SRP=148.499;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:9,1:9:351:1:39:-0.886264,0,-28.9415 0/1:26:20,6:20:752:6:234:-13.6043,0,-60.1778 0/1:21:11,9:11:415:9:348:-25.5311,0,-31.5549 0/0:27:27,0:27:1036:0:0:0,-8.12781,-93.5485 dDocent_Contig_8795 119 . C A 221.482 . AB=0.245614;ABP=35.049;AC=2;AF=0.25;AN=8;AO=18;CIGAR=1X2M1I12M4D1M;DP=121;DPB=118.3;DPRA=4.70833;EPP=42.0968;EPPR=220.158;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=582;QR=3426;RO=100;RPL=0;RPP=42.0968;RPPR=220.158;RPR=18;RUN=1;SAF=0;SAP=42.0968;SAR=18;SRF=0;SRP=220.158;SRR=100;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:56:51,4:51:1725:4:116:0,-6.16729,-144.794 0|1:35:24,10:24:840:10:330:-19.5928,0,-65.4984 0|1:22:18,4:18:618:4:136:-5.95326,0,-49.3205 0|0:8:7,0:7:243:0:0:0,-2.10721,-21.8856 dDocent_Contig_8796 113 . T G 67.3059 . AB=0.266667;ABP=10.1038;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=37;DPB=37;DPRA=2.04545;EPP=11.6962;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=140;QR=1135;RO=33;RPL=0;RPP=11.6962;RPPR=74.6689;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=74.6689;SRR=33;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:7:7,0:7:241:0:0:0,-2.10721,-22.0263 0/1:15:11,4:11:376:4:140:-8.42948,0,-29.6545 0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9449 0/0:11:11,0:11:378:0:0:0,-3.31133,-34.3509 dDocent_Contig_8797 16 . G A 998.866 . AB=0.229167;ABP=33.5919;AC=1;AF=0.125;AN=8;AO=11;CIGAR=1X1M1X;DP=92;DPB=92;DPRA=0;EPP=26.8965;EPPR=109.412;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.909091;PAIREDR=0.836735;PAO=0;PQA=0;PQR=0;PRO=0;QA=434;QR=1909;RO=49;RPL=0;RPP=26.8965;RPPR=109.412;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:21:6,3,12:6:241:3,12:112,475:-37.3039,-29.9469,-48.9048,0,-10.7197,-16.2655 0|1:27:17,8,2:17:661:8,2:322,80:-21.4225,0,-51.8971,-19.9504,-47.714,-73.6544 0|0:16:7,0,9:7:272:0,9:0,327:-24.9465,-27.0537,-49.4154,0,-22.7388,-20.0295 0|0:28:19,0,9:19:735:0,9:0,352:-23.6116,-29.3312,-89.6972,0,-60.7554,-58.0461 dDocent_Contig_8798 20 . T C 3279.14 . AB=0.809524;ABP=107.861;AC=5;AF=0.625;AN=8;AO=103;CIGAR=1X;DP=127;DPB=127;DPRA=0;EPP=226.672;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.990291;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4112;QR=910;RO=24;RPL=0;RPP=226.672;RPPR=55.1256;RPR=103;RUN=1;SAF=103;SAP=226.672;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:62:8,54:8:315:54:2135:-173.654,0,-10.0493 0/1:49:9,40:9:321:40:1619:-131.182,0,-14.4666 0/1:15:7,8:7:274:8:317:-24.3806,0,-20.5096 1/1:1:0,1:0:0:1:41:-4.09457,-0.30103,0 dDocent_Contig_8799 80 . T G 292.149 . AB=0.237537;ABP=207.046;AC=2;AF=0.333333;AN=6;AO=92;CIGAR=1X;DP=404;DPB=404;DPRA=0;EPP=202.786;EPPR=680.51;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.771739;PAIREDR=0.910256;PAO=0;PQA=0;PQR=0;PRO=0;QA=1688;QR=11577;RO=312;RPL=92;RPP=202.786;RPPR=64.5075;RPR=0;RUN=1;SAF=92;SAP=202.786;SAR=0;SRF=109;SRP=64.5075;SRR=203;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:246:187,59:187:6933:59:1006:-16.6546,0,-549.706 ./.:.:.:.:.:.:.:. 0/0:63:52,11:52:1832:11:188:0,-1.87437,-147.993 0/1:95:73,22:73:2812:22:494:-16.0832,0,-224.612 dDocent_Contig_8800 31 . T C 244.466 . AB=0.411765;ABP=4.1599;AC=1;AF=0.125;AN=8;AO=7;CIGAR=5M1X4M;DP=40;DPB=35.2;DPRA=3.77778;EPP=18.2106;EPPR=61.6401;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=285;QR=1041;RO=27;RPL=0;RPP=18.2106;RPPR=61.6401;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:17:7,3,7:7:265:3,7:112,285:-21.4268,-14.3737,-35.1806,0,-12.559,-19.6207 0|0:14:11,3,0:11:422:3,0:114,0:-6.41739,0,-34.1153,-9.72872,-35.0183,-44.3666 0|0:6:6,0,0:6:234:0,0:0,0:0,-1.80618,-21.4306,-1.80618,-21.4306,-21.4306 0|0:3:3,0,0:3:120:0,0:0,0:0,-0.90309,-11.1879,-0.90309,-11.1879,-11.1879 dDocent_Contig_8801 13 . G A 456.582 . AB=0.192;ABP=106.008;AC=2;AF=0.25;AN=8;AO=24;CIGAR=1X;DP=330;DPB=330;DPRA=0.609756;EPP=55.1256;EPPR=667.481;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=955;QR=12197;RO=306;RPL=0;RPP=55.1256;RPPR=667.481;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=306;SRP=667.481;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:99:99,0:99:3947:0:0:0,-29.802,-355.22 0/0:106:106,0:106:4210:0:0:0,-31.9092,-378.872 0/1:84:64,20:64:2550:20:794:-46.4928,0,-204.354 0/1:41:37,4:37:1490:4:161:-2.53267,0,-122.002 dDocent_Contig_8802 8 . G A 277.62 . AB=0.205128;ABP=61.9184;AC=3;AF=0.375;AN=8;AO=16;CIGAR=1X;DP=96;DPB=96;DPRA=1.44444;EPP=37.7539;EPPR=176.728;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.4375;PAIREDR=0.825;PAO=0;PQA=0;PQR=0;PRO=0;QA=617;QR=3061;RO=80;RPL=0;RPP=37.7539;RPPR=176.728;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=80;SRP=176.728;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:24,5:24:928:5:194:-9.10297,0,-75.1058 0/1:19:13,6:13:492:6:232:-15.5294,0,-38.9026 0/1:30:25,5:25:957:5:191:-8.52762,0,-77.4086 0/0:18:18,0:18:684:0:0:0,-5.41854,-61.8905 dDocent_Contig_8803 18 . T G 349.76 . AB=0.419355;ABP=4.76149;AC=2;AF=0.333333;AN=6;AO=13;CIGAR=1X;DP=42;DPB=42;DPRA=1.40909;EPP=31.2394;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=518;QR=1155;RO=29;RPL=0;RPP=31.2394;RPPR=65.983;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:11,12:11:440:12:478:-36.4462,0,-33.0316 0/1:8:7,1:7:286:1:40:-1.58744,0,-23.7066 0/0:11:11,0:11:429:0:0:0,-3.31133,-38.9603 ./.:.:.:.:.:.:.:. dDocent_Contig_8804 64 . T C 524.436 . AB=0.425926;ABP=5.5839;AC=4;AF=0.5;AN=8;AO=23;CIGAR=2X;DP=54;DPB=54;DPRA=0;EPP=52.9542;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=830;QR=1083;RO=31;RPL=23;RPP=52.9542;RPPR=70.3259;RPR=0;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:14:11,3:11:395:3:115:-6.51061,0,-31.6739 0|1:18:8,10:8:258:10:369:-28.1395,0,-18.1139 0|1:11:3,8:3:93:8:285:-22.6759,0,-5.36342 0|1:11:9,2:9:337:2:61:-2.48099,0,-27.3727 dDocent_Contig_8805 8 . G A 200.993 . 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G A 217.662 . AB=0.310345;ABP=12.0706;AC=2;AF=0.25;AN=8;AO=9;CIGAR=1X;DP=39;DPB=39;DPRA=2.9;EPP=22.5536;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=368;QR=1193;RO=30;RPL=0;RPP=22.5536;RPPR=68.1545;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:11,4:11:433:4:164:-10.6344,0,-34.8059 0/1:14:9,5:9:355:5:204:-14.5296,0,-28.0965 0/0:4:4,0:4:161:0:0:0,-1.20412,-14.8753 0/0:6:6,0:6:244:0:0:0,-1.80618,-22.3388 dDocent_Contig_8807 200 . C T 32.9663 . AB=0.222222;ABP=9.04217;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X;DP=27;DPB=27;DPRA=1.5;EPP=7.35324;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=78;QR=914;RO=25;RPL=2;RPP=7.35324;RPPR=57.2971;RPR=0;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=57.2971;SRR=25;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:7,2:7:249:2:78:-4.6942,0,-20.0376 0/0:8:8,0:8:300:0:0:0,-2.40824,-27.3546 0/0:7:7,0:7:260:0:0:0,-2.10721,-23.7541 0/0:3:3,0:3:105:0:0:0,-0.90309,-9.79338 dDocent_Contig_8808 137 . C T 206.136 . AB=0.240741;ABP=34.5369;AC=2;AF=0.25;AN=8;AO=14;CIGAR=1X;DP=79;DPB=79;DPRA=2.3;EPP=33.4109;EPPR=144.156;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=475;QR=2216;RO=65;RPL=0;RPP=33.4109;RPPR=144.156;RPR=14;RUN=1;SAF=0;SAP=33.4109;SAR=14;SRF=0;SRP=144.156;SRR=65;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:20,4:20:691:4:138:-5.53573,0,-55.2877 0/1:30:21,9:21:707:9:302:-18.4757,0,-54.9138 0/0:15:14,1:14:483:1:35:0,-1.01682,-40.3006 0/0:10:10,0:10:335:0:0:0,-3.0103,-30.4747 dDocent_Contig_8809 108 . T A 571.971 . AB=0;ABP=0;AC=4;AF=0.5;AN=8;AO=19;CIGAR=2X;DP=24;DPB=24;DPRA=5;EPP=44.2683;EPPR=0;GTI=0;LEN=1;MEANALT=1.5;MQM=26.0526;MQMR=0;NS=4;NUMALT=2;ODDS=1.0842e-19;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=658;QR=0;RO=0;RPL=0;RPP=44.2683;RPPR=0;RPR=19;RUN=1;SAF=0;SAP=44.2683;SAR=19;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:1:0,0,1:0:0:0,1:0,34:-3.37877,-3.37877,-3.37877,-0.30103,-0.30103,0 1|1:4:0,3,1:0:0:3,1:104,7:-5.72439,-0.90309,0,-5.42999,-0.504155,-5.12896 0|0:3:0,0,3:0:0:0,3:0,105:-9.77598,-9.77598,-9.77598,-0.90309,-0.90309,0 1|1:16:0,16,0:0:0:16,0:554,0:-37.714,-4.81648,0,-37.714,-4.81648,-37.714 dDocent_Contig_8810 24 . C A 1814.68 . AB=0.632653;ABP=17.989;AC=4;AF=0.5;AN=8;AO=62;CIGAR=1X;DP=98;DPB=98;DPRA=0;EPP=137.642;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2412;QR=1436;RO=36;RPL=0;RPP=137.642;RPPR=81.1833;RPR=62;RUN=1;SAF=62;SAP=137.642;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:33:12,21:12:474:21:810:-63.2778,0,-33.0732 0/1:33:8,25:8:323:25:1008:-81.0825,0,-19.5046 0/1:15:9,6:9:355:6:212:-14.895,0,-27.7929 0/1:17:7,10:7:284:10:382:-29.6103,0,-20.8163 dDocent_Contig_8812 8 . G A 518.064 . AB=0.247423;ABP=56.7598;AC=2;AF=0.25;AN=8;AO=27;CIGAR=1X;DP=151;DPB=151;DPRA=0;EPP=61.6401;EPPR=270.101;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.703704;PAIREDR=0.926829;PAO=0;PQA=0;PQR=0;PRO=0;QA=1047;QR=4714;RO=123;RPL=0;RPP=61.6401;RPPR=270.101;RPR=27;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=123;SRP=270.101;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:31:28,2:28:1069:2:78:0,-2.01708,-89.1098 0/1:52:42,10:42:1608:10:389:-19.7148,0,-129.33 0/1:45:31,14:31:1199:14:541:-35.4895,0,-94.6599 0/0:23:22,1:22:838:1:39:0,-3.02713,-71.8453 dDocent_Contig_8813 13 . C T 449.474 . AB=0.350877;ABP=14.02;AC=4;AF=0.5;AN=8;AO=20;CIGAR=1X2M2X;DP=57;DPB=57;DPRA=0;EPP=46.4397;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.5;PAIREDR=0.837838;PAO=0;PQA=0;PQR=0;PRO=0;QA=756;QR=1475;RO=37;RPL=0;RPP=46.4397;RPPR=83.3548;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:11:6,5:6:241:5:187:-13.8812,0,-18.7553 0|1:11:6,5:6:242:5:190:-14.1558,0,-18.8462 0|1:13:6,7:6:233:7:265:-20.2977,0,-17.4233 0|1:22:19,3:19:759:3:114:-4.00956,0,-62.0119 dDocent_Contig_8814 49 . G T 129.497 . AB=0.384615;ABP=4.51363;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=112;DPB=112;DPRA=0.393939;EPP=13.8677;EPPR=235.358;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=202;QR=4200;RO=107;RPL=0;RPP=13.8677;RPPR=235.358;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=107;SRP=235.358;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:16:16,0:16:637:0:0:0,-4.81648,-57.6637 0/0:70:70,0:70:2733:0:0:0,-21.0721,-246.097 0/0:13:13,0:13:509:0:0:0,-3.91339,-46.1532 0/1:13:8,5:8:321:5:202:-14.6487,0,-25.3429 dDocent_Contig_8815 227 . N G 66.4848 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=70;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:70:-6.6474,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_8816 77 . C T 238.395 . AB=0.225806;ABP=43.4978;AC=4;AF=0.5;AN=8;AO=14;CIGAR=1X;DP=62;DPB=62;DPRA=0;EPP=33.4109;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.928571;PAIREDR=0.979167;PAO=0;PQA=0;PQR=0;PRO=0;QA=535;QR=1801;RO=48;RPL=14;RPP=33.4109;RPPR=107.241;RPR=0;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:11,2:11:425:2:78:-3.49008,0,-34.6908 0/1:31:26,5:26:956:5:194:-8.50091,0,-77.0154 0/1:6:5,1:5:194:1:36:-1.79209,0,-16.0267 0/1:12:6,6:6:226:6:227:-17.1809,0,-17.0886 dDocent_Contig_8818 11 . T A 233.881 . AB=0.321429;ABP=10.7656;AC=1;AF=0.125;AN=8;AO=10;CIGAR=1X;DP=83;DPB=83;DPRA=1.59375;EPP=24.725;EPPR=161.528;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.986301;PAO=0;PQA=0;PQR=0;PRO=0;QA=406;QR=2944;RO=73;RPL=0;RPP=24.725;RPPR=161.528;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=73;SRP=161.528;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:19,9:19:765:9:365:-24.786,0,-60.742 0/0:23:22,1:22:881:1:41:0,-2.82912,-75.5061 0/0:25:25,0:25:1013:0:0:0,-7.52575,-91.4635 0/0:7:7,0:7:285:0:0:0,-2.10721,-26.0244 dDocent_Contig_8820 48 . C T 484.274 . AB=0.0952381;ABP=32.8939;AC=3;AF=0.375;AN=8;AO=17;CIGAR=1X;DP=74;DPB=74;DPRA=0.947368;EPP=39.9253;EPPR=55.1637;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=609;QR=2256;RO=57;RPL=0;RPP=39.9253;RPPR=55.1637;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:27:27,0:27:1067:0:0:0,-8.12781,-96.3207 1/1:15:0,15:0:0:15:531:-48.1134,-4.51545,0 0/0:11:11,0:11:425:0:0:0,-3.31133,-38.5946 0/1:21:19,2:19:764:2:78:-1.08184,0,-62.7604 dDocent_Contig_8821 7 . C G 1218.68 . AB=0.218543;ABP=106.91;AC=1;AF=0.125;AN=8;AO=33;CIGAR=1X3M1X;DP=151;DPB=151;DPRA=0;EPP=74.6689;EPPR=155.013;GTI=0;LEN=1;MEANALT=2.75;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.454545;PAIREDR=0.785714;PAO=0;PQA=0;PQR=0;PRO=0;QA=1137;QR=2678;RO=70;RPL=0;RPP=74.6689;RPPR=155.013;RPR=33;RUN=1;SAF=33;SAP=74.6689;SAR=0;SRF=70;SRP=155.013;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:34:18,8,8:18:686:8,8:281,323:-21.2335,-3.81118,-57.6594,0,-33.4347,-53.8843 0|1:37:17,10,9:17:654:10,9:372,358:-25.3315,0,-50.6957,-0.952796,-24.2228,-51.9616 0|0:46:21,6,18:21:803:6,18:213,721:-53.1013,-42.0812,-106.156,0,-48.5583,-60.4864 0|0:34:14,9,10:14:535:9,10:271,409:-29.5872,-12.1756,-53.3503,0,-22.2971,-40.9297 dDocent_Contig_8823 29 . G A 158.748 . AB=0.216216;ABP=28.8919;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=166;DPB=166;DPRA=0.860465;EPP=20.3821;EPPR=346.103;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=315;QR=6193;RO=158;RPL=0;RPP=20.3821;RPPR=346.103;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=158;SRP=346.103;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:39:39,0:39:1502:0:0:0,-11.7402,-135.42 0/0:74:74,0:74:2919:0:0:0,-22.2762,-262.811 0/1:37:29,8:29:1141:8:315:-17.5738,0,-91.8347 0/0:16:16,0:16:631:0:0:0,-4.81648,-57.1239 dDocent_Contig_8824 1 . N G 75.9287 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=80;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:80:-7.59179,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_8825 114 . T A 410.298 . AB=0.395349;ABP=7.10075;AC=2;AF=0.25;AN=8;AO=19;CIGAR=1X;DP=75;DPB=75;DPRA=8;EPP=44.2683;EPPR=99.951;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=712;QR=2133;RO=56;RPL=19;RPP=44.2683;RPPR=99.951;RPR=0;RUN=1;SAF=0;SAP=44.2683;SAR=19;SRF=0;SRP=124.613;SRR=56;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:29:27,2:27:1047:2:82:0,-0.950192,-86.7399 0/1:31:19,12:19:706:12:455:-31.9544,0,-54.5201 0/1:12:7,5:7:266:5:175:-12.4731,0,-20.6875 0/0:3:3,0:3:114:0:0:0,-0.90309,-10.6318 dDocent_Contig_8826 45 . C T 175.955 . AB=0.235294;ABP=23.7032;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=103;DPB=103;DPRA=1.47826;EPP=20.3821;EPPR=209.3;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=324;QR=3829;RO=95;RPL=0;RPP=20.3821;RPPR=209.3;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=95;SRP=209.3;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:59:59,0:59:2375:0:0:0,-17.7608,-213.898 0/1:34:26,8:26:1048:8:324:-19.2944,0,-84.3747 0/0:5:5,0:5:201:0:0:0,-1.50515,-18.47 0/0:5:5,0:5:205:0:0:0,-1.50515,-18.835 dDocent_Contig_8827 125 . T A 628.798 . AB=0.438596;ABP=4.877;AC=4;AF=0.5;AN=8;AO=25;CIGAR=1X1M1I5M;DP=57;DPB=60.5714;DPRA=0;EPP=57.2971;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1.5;MQM=51.24;MQMR=58.1333;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.933333;PAO=0;PQA=0;PQR=0;PRO=0;QA=968;QR=1097;RO=30;RPL=0;RPP=57.2971;RPPR=68.1545;RPR=25;RUN=1;SAF=0;SAP=57.2971;SAR=25;SRF=0;SRP=68.1545;SRR=30;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:24:10,14:10:368:14:554:-42.1889,0,-26.2443 0|1:16:12,3:12:442:3:117:-6.03318,0,-35.268 0|1:11:6,5:6:207:5:188:-13.9129,0,-15.6537 0|1:6:2,3:2:80:3:109:-8.14173,0,-4.0512 dDocent_Contig_8829 131 . T A 50.429 . AB=0.230769;ABP=11.1951;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=46;DPB=46;DPRA=1.18182;EPP=9.52472;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=111;QR=1559;RO=43;RPL=0;RPP=9.52472;RPPR=96.3836;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=96.3836;SRR=43;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:10,3:10:357:3:111:-6.44053,0,-28.5577 0/0:5:5,0:5:185:0:0:0,-1.50515,-17.01 0/0:26:26,0:26:945:0:0:0,-7.82678,-85.3665 0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83664 dDocent_Contig_8831 67 . A G 147.732 . AB=0.228571;ABP=25.4075;AC=3;AF=0.375;AN=8;AO=8;CIGAR=1X;DP=62;DPB=62;DPRA=0.432099;EPP=20.3821;EPPR=120.27;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=326;QR=2011;RO=54;RPL=8;RPP=20.3821;RPPR=120.27;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:27:27,0:27:1013:0:0:0,-8.12781,-91.4746 0/1:7:6,1:6:223:1:40:-1.88847,0,-18.3194 0/1:17:13,4:13:493:4:163:-9.94092,0,-39.5961 0/1:11:8,3:8:282:3:123:-8.15346,0,-22.3998 dDocent_Contig_8832 1 . N G 71.9849 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=54;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=76;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:76:-7.19741,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_8834 36 . G C 121.641 . AB=0.170732;ABP=41.6201;AC=1;AF=0.125;AN=8;AO=12;CIGAR=1X;DP=161;DPB=161;DPRA=10.4;EPP=29.068;EPPR=326.56;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=491;QR=5916;RO=149;RPL=0;RPP=29.068;RPPR=326.56;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=149;SRP=326.56;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:60:59,1:59:2340:1:41:0,-13.9672,-206.656 0/0:55:51,4:51:2011:4:163:0,-1.49822,-166.13 0/1:41:34,7:34:1362:7:287:-13.863,0,-110.497 0/0:5:5,0:5:203:0:0:0,-1.50515,-18.6531 dDocent_Contig_8835 98 . N T 130.498 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=4;CIGAR=2X;DP=4;DPB=6.5;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=3;PQA=54;PQR=0;PRO=0;QA=137;QR=0;RO=0;RPL=4;RPP=11.6962;RPPR=0;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. 1|1:3:0,3:0:0:3:103:-9.34842,-0.90309,0 1|1:1:0,1:0:0:1:34:-3.39891,-0.30103,0 dDocent_Contig_8836 8 . C T 858.798 . AB=0.4125;ABP=8.33041;AC=3;AF=0.375;AN=8;AO=33;CIGAR=1X1M;DP=92;DPB=92;DPRA=2.22222;EPP=74.6689;EPPR=124.613;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1266;QR=2145;RO=56;RPL=0;RPP=74.6689;RPPR=124.613;RPR=33;RUN=1;SAF=33;SAP=74.6689;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:40:15,0,25:15:576:0,25:0,961:-74.7626,-79.278,-126.56,0,-47.6661,-40.1403 0|1:17:14,1,2:14:538:1,2:39,74:-1.82593,-2.82784,-46.7056,0,-40.9547,-43.5589 0|1:23:15,2,6:15:577:2,6:78,231:-14.4479,-12.5503,-59.3205,0,-40.9554,-45.5616 0|0:12:12,0,0:12:454:0,0:0,0:0,-3.61236,-41.2069,-3.61236,-41.2069,-41.2069 dDocent_Contig_8837 48 . G C 442.281 . AB=0.25;ABP=46.4397;AC=3;AF=0.375;AN=8;AO=20;CIGAR=1X;DP=95;DPB=95;DPRA=1.77778;EPP=46.4397;EPPR=163.699;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.95;PAIREDR=0.959459;PAO=0;PQA=0;PQR=0;PRO=0;QA=794;QR=2819;RO=74;RPL=0;RPP=46.4397;RPPR=163.699;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=74;SRP=163.699;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:45:41,4:41:1569:4:156:-0.869855,0,-127.928 0/1:29:13,15:13:488:15:599:-45.4487,0,-35.4626 0/0:15:15,0:15:562:0:0:0,-4.51545,-50.9185 0/1:6:5,1:5:200:1:39:-2.09038,0,-16.5735 dDocent_Contig_8838 9 . T G 210.599 . AB=0.153846;ABP=57.1301;AC=1;AF=0.125;AN=8;AO=14;CIGAR=1X1M1X;DP=170;DPB=170;DPRA=0;EPP=33.4109;EPPR=330.903;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=533;QR=5927;RO=151;RPL=0;RPP=33.4109;RPPR=330.903;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=151;SRP=330.903;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:44:41,3,0:41:1596:3,0:116,0:0,-2.42761,-133.074,-12.3422,-133.977,-143.505 0|0:52:49,3,0:49:1940:3,0:107,0:0,-5.67155,-164.837,-14.7505,-165.74,-174.46 0|1:52:44,8,0:44:1741:8,0:310,0:-12.61,0,-141.271,-25.8553,-143.679,-169.146 0|0:22:17,0,5:17:650:0,5:0,201:-11.8479,-16.9654,-70.2815,0,-53.7132,-52.208 dDocent_Contig_8839 26 . G A 2779.58 . AB=0.557471;ABP=8.00219;AC=4;AF=0.5;AN=8;AO=97;CIGAR=1X1M1X;DP=174;DPB=174;DPRA=0;EPP=213.643;EPPR=168.042;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.989691;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3740;QR=2968;RO=76;RPL=0;RPP=213.643;RPPR=168.042;RPR=97;RUN=1;SAF=97;SAP=213.643;SAR=0;SRF=76;SRP=168.042;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:54:31,23:31:1207:23:888:-63.9773,0,-92.6611 0|1:63:20,43:20:776:43:1660:-130.682,0,-51.1939 0|1:35:16,18:16:629:18:702:-52.8781,0,-46.3112 0|1:22:9,13:9:356:13:490:-37.8187,0,-25.78 dDocent_Contig_8840 18 . T A 203.851 . AB=0.290323;ABP=14.8483;AC=2;AF=0.25;AN=8;AO=10;CIGAR=1X;DP=60;DPB=60;DPRA=19.6667;EPP=24.725;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.3;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=397;QR=1977;RO=50;RPL=0;RPP=24.725;RPPR=111.584;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:16,2:16:613:2:76:-1.79572,0,-50.073 0/0:28:27,1:27:1087:1:37:0,-4.73101,-94.42 0/1:13:6,7:6:236:7:284:-22.0206,0,-17.698 0/0:1:1,0:1:41:0:0:0,-0.30103,-4.09457 dDocent_Contig_8841 123 . T A 157.207 . AB=0.466667;ABP=3.15506;AC=1;AF=0.125;AN=8;AO=18;CIGAR=1X;DP=219;DPB=219;DPRA=0;EPP=42.0968;EPPR=439.476;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.532338;PAO=0;PQA=0;PQR=0;PRO=0;QA=608;QR=6840;RO=201;RPL=0;RPP=42.0968;RPPR=439.476;RPR=18;RUN=1;SAF=0;SAP=42.0968;SAR=18;SRF=0;SRP=439.476;SRR=201;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:117:112,5:112:3839:5:163:0,-20.23,-330.737 0/0:50:46,4:46:1521:4:135:0,-2.56852,-124.692 0/1:15:8,7:8:278:7:240:-17.4196,0,-20.8424 0/0:37:35,2:35:1202:2:70:0,-4.49071,-101.836 dDocent_Contig_8842 77 . G A 43.5992 . AB=0.25;ABP=9.52472;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=29;DPB=29;DPRA=1.41176;EPP=9.52472;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=105;QR=876;RO=26;RPL=3;RPP=9.52472;RPPR=59.4686;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:10:10,0:10:342:0:0:0,-3.0103,-31.1113 0/0:7:7,0:7:230:0:0:0,-2.10721,-21.0218 0/1:12:9,3:9:304:3:105:-6.1838,0,-24.0761 ./.:.:.:.:.:.:.:. dDocent_Contig_8843 19 . C T 48.6648 . AB=0.117647;ABP=89.3583;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X;DP=145;DPB=145;DPRA=3.02778;EPP=22.5536;EPPR=260.281;GTI=0;LEN=1;MEANALT=1.5;MQM=43.3333;MQMR=56.6119;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.738806;PAO=0;PQA=0;PQR=0;PRO=0;QA=358;QR=5297;RO=134;RPL=0;RPP=22.5536;RPPR=293.988;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=130;SRP=260.281;SRR=4;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:41:40,1:40:1585:1:40:0,-8.88774,-139.404 0/1:68:58,8:58:2268:8:318:-6.56544,0,-172.014 0/0:27:27,0:27:1082:0:0:0,-8.12781,-87.7695 0/0:9:9,0:9:362:0:0:0,-2.70927,-32.9442 dDocent_Contig_8844 75 . C A 2308.79 . AB=0.464088;ABP=5.03781;AC=4;AF=0.5;AN=8;AO=84;CIGAR=1X;DP=181;DPB=181;DPRA=0;EPP=185.414;EPPR=211.472;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3240;QR=3738;RO=96;RPL=84;RPP=185.414;RPPR=211.472;RPR=0;RUN=1;SAF=84;SAP=185.414;SAR=0;SRF=96;SRP=211.472;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:72:42,30:42:1601:30:1144:-81.5747,0,-122.652 0/1:52:19,32:19:760:32:1226:-94.8526,0,-52.9626 0/1:31:18,13:18:710:13:516:-37.4566,0,-54.8962 0/1:26:17,9:17:667:9:354:-24.3933,0,-52.531 dDocent_Contig_8845 33 . G C 519.244 . AB=0.454545;ABP=3.79993;AC=3;AF=0.375;AN=8;AO=20;CIGAR=1X;DP=56;DPB=56;DPRA=1.22222;EPP=18.6449;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.5;PAIREDR=0.888889;PAO=0;PQA=0;PQR=0;PRO=0;QA=772;QR=1421;RO=36;RPL=0;RPP=46.4397;RPPR=81.1833;RPR=20;RUN=1;SAF=16;SAP=18.6449;SAR=4;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:7,6:7:284:6:225:-16.6944,0,-22.02 0/0:12:12,0:12:477:0:0:0,-3.61236,-43.2801 0/1:14:8,6:8:304:6:245:-18.2151,0,-23.4952 0/1:17:9,8:9:356:8:302:-22.4128,0,-27.2821 dDocent_Contig_8846 10 . G A 91.0604 . AB=0.333333;ABP=5.9056;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1M12I3M1X1M1X2M1X;DP=33;DPB=37.8;DPRA=1.71429;EPP=11.6962;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.896552;PAO=0;PQA=0;PQR=0;PRO=0;QA=156;QR=1115;RO=29;RPL=0;RPP=11.6962;RPPR=65.983;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:4:4,0:4:153:0:0:0,-1.20412,-14.1414 0|0:7:7,0:7:269:0:0:0,-2.10721,-24.5746 0|1:12:8,4:8:309:4:156:-10.8049,0,-24.5606 0|0:10:10,0:10:384:0:0:0,-3.0103,-34.9159 dDocent_Contig_8847 29 . G A 439.496 . AB=0.296875;ABP=25.9465;AC=3;AF=0.375;AN=8;AO=19;CIGAR=1X2M1X2M1X;DP=71;DPB=71;DPRA=3.04762;EPP=44.2683;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=750;QR=2034;RO=52;RPL=0;RPP=44.2683;RPPR=115.927;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:13:10,3:10:387:3:119:-7.182,0,-31.273 0|1:20:14,6:14:544:6:235:-15.499,0,-43.284 0|0:7:7,0:7:276:0:0:0,-2.10721,-25.2088 0|1:31:21,10:21:827:10:396:-26.6665,0,-65.415 dDocent_Contig_8848 8 . C T 1353.64 . AB=0.260638;ABP=96.5684;AC=3;AF=0.375;AN=8;AO=49;CIGAR=2X4M;DP=188;DPB=188;DPRA=0;EPP=109.412;EPPR=194.1;GTI=0;LEN=1;MEANALT=3.5;MQM=53.551;MQMR=59.4318;NS=4;NUMALT=5;ODDS=0;PAIRED=0.77551;PAIREDR=0.965909;PAO=0;PQA=0;PQR=0;PRO=0;QA=1766;QR=3407;RO=88;RPL=0;RPP=109.412;RPPR=194.1;RPR=49;RUN=1;SAF=49;SAP=109.412;SAR=0;SRF=88;SRP=194.1;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:81:45,0,0,2,29,5:45:1740:0,0,2,29,5:0,0,78,1073,171:-73.691,-87.2374,-228.094,-87.2374,-228.094,-228.094,-80.8242,-221.681,-221.681,-221.079,0,-140.87,-140.87,-134.457,-132.14,-73.3633,-214.218,-214.218,-207.806,-126.996,-212.713 0|0:59:21,13,3,6,11,4:21:818:13,3,6,11,4:489,118,234,394,114:-33.7006,0,-63.3367,-30.3127,-57.5417,-96.655,-20.7821,-48.0123,-78.3209,-86.223,-8.71652,-35.9461,-66.2527,-56.7239,-72.6493,-30.9792,-58.2062,-88.5126,-78.984,-66.917,-97.0163 0|1:35:13,0,10,0,8,4:13:513:0,10,0,8,4:0,391,0,260,100:-28.2784,-32.1918,-74.4245,0,-42.2642,-39.2539,-32.1918,-74.4245,-42.2642,-74.4245,-11.9528,-54.1855,-22.0268,-54.1855,-51.7773,-24.4187,-66.646,-34.4899,-66.646,-46.4141,-65.4419 0|1:13:9,0,0,3,1,0:9:336:0,0,3,1,0:0,0,119,39,0:-7.09173,-9.801,-37.2947,-9.801,-37.2947,-37.2947,0,-27.4937,-27.4937,-26.5906,-6.59677,-34.088,-34.088,-24.2861,-33.7869,-9.801,-37.2947,-37.2947,-27.4937,-34.088,-37.2947 dDocent_Contig_8849 8 . C T 4568.47 . AB=0.0882353;ABP=103.153;AC=0;AF=0;AN=8;AO=6;CIGAR=2X1M;DP=191;DPB=191;DPRA=0;EPP=8.80089;EPPR=70.3259;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=1.38778e-17;PAIRED=0.666667;PAIREDR=0.935484;PAO=0;PQA=0;PQR=0;PRO=0;QA=229;QR=1201;RO=31;RPL=0;RPP=16.0391;RPPR=70.3259;RPR=6;RUN=1;SAF=5;SAP=8.80089;SAR=1;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:68:9,2,6,51:9:345:2,6,51:80,229,1956:-157.289,-153.408,-181.122,-141.21,-162.936,-167.72,0,-21.7222,-9.52783,-12.9618 0|0:49:8,0,0,41:8:312:0,0,41:0,0,1575:-127.27,-129.678,-155.326,-129.678,-155.326,-155.326,0,-26.0367,-26.0367,-13.6944 0|0:34:7,2,0,25:7:271:2,0,25:79,0,956:-76.3279,-71.9332,-93.5946,-78.4351,-94.1967,-100.698,0,-15.7537,-22.2564,-14.7306 0|0:40:7,0,0,33:7:273:0,0,33:0,0,1279:-103.358,-105.465,-127.907,-105.465,-127.907,-127.907,0,-22.8308,-22.8308,-12.8968 dDocent_Contig_8850 78 . A G 61.9185 . AB=0.333333;ABP=5.18177;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=41;DPB=41;DPRA=0.5625;EPP=9.52472;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=115;QR=1410;RO=38;RPL=3;RPP=9.52472;RPPR=85.5263;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2107 0/0:20:20,0:20:744:0:0:0,-6.0206,-67.2831 0/1:9:6,3:6:234:3:115:-8.01576,0,-18.7218 ./.:.:.:.:.:.:.:. dDocent_Contig_8852 8 . C T 1425.08 . AB=0.481132;ABP=3.33807;AC=4;AF=0.5;AN=8;AO=51;CIGAR=1X3M1X;DP=106;DPB=106;DPRA=0;EPP=113.755;EPPR=113.755;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2000;QR=1981;RO=51;RPL=0;RPP=113.755;RPPR=113.755;RPR=51;RUN=1;SAF=51;SAP=113.755;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:26:11,0,15:11:432:0,15:0,584:-45.0742,-48.3855,-83.9182,0,-35.9236,-31.4082 0|1:48:27,3,18:27:1043:3,18:119,704:-49.7486,-48.0796,-132.832,0,-75.8525,-80.231 0|1:16:4,0,12:4:154:0,12:0,475:-38.2858,-39.4899,-52.1314,0,-13.0289,-9.41651 0|1:16:9,0,6:9:352:0,6:0,237:-16.7974,-19.5067,-48.4464,0,-28.9425,-27.1363 dDocent_Contig_8853 10 . C T 103.584 . AB=0.238095;ABP=15.5221;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X;DP=151;DPB=151;DPRA=1.55932;EPP=22.5536;EPPR=311.359;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=359;QR=5698;RO=142;RPL=0;RPP=22.5536;RPPR=311.359;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=142;SRP=311.359;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:71:67,4:67:2681:4:159:0,-6.68117,-226.719 0/0:37:37,0:37:1475:0:0:0,-11.1381,-132.996 0/0:22:22,0:22:891:0:0:0,-6.62266,-80.4965 0/1:21:16,5:16:651:5:200:-12.0574,0,-52.6015 dDocent_Contig_8855 10 . C T 295.488 . AB=0.213333;ABP=56.5443;AC=4;AF=0.5;AN=8;AO=16;CIGAR=1X;DP=75;DPB=75;DPRA=0;EPP=37.7539;EPPR=131.127;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=639;QR=2380;RO=59;RPL=0;RPP=37.7539;RPPR=131.127;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=59;SRP=131.127;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:44:39,5:39:1586:5:204:-5.49871,0,-129.722 0/1:15:11,4:11:435:4:161:-10.3594,0,-34.9863 0/1:10:4,6:4:162:6:241:-19.056,0,-11.9567 0/1:6:5,1:5:197:1:33:-1.49295,0,-16.2991 dDocent_Contig_8856 11 . C A 56.5018 . AB=0.16;ABP=28.1125;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=118;DPB=118;DPRA=0.806452;EPP=11.6962;EPPR=250.558;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.991228;PAO=0;PQA=0;PQR=0;PRO=0;QA=161;QR=4588;RO=114;RPL=0;RPP=11.6962;RPPR=250.558;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=114;SRP=250.558;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:52:52,0:52:2097:0:0:0,-15.6536,-188.903 0/0:29:29,0:29:1167:0:0:0,-8.72987,-105.306 0/1:25:21,4:21:835:4:161:-7.34915,0,-67.9341 0/0:12:12,0:12:489:0:0:0,-3.61236,-44.3611 dDocent_Contig_8857 120 . C A 76.3346 . AB=0.333333;ABP=5.9056;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=120;DPB=120;DPRA=3;EPP=18.2106;EPPR=248.387;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=246;QR=3935;RO=113;RPL=0;RPP=18.2106;RPPR=248.387;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=248.387;SRR=113;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:58:56,2:56:1965:2:70:0,-10.8124,-170.472 0/0:38:37,1:37:1275:1:36:0,-7.84086,-111.449 0/1:12:8,4:8:288:4:140:-9.33243,0,-22.655 0/0:12:12,0:12:407:0:0:0,-3.61236,-36.9546 dDocent_Contig_8858 10 . C T 247.712 . AB=0.156863;ABP=107.326;AC=2;AF=0.25;AN=8;AO=21;CIGAR=2X;DP=193;DPB=193;DPRA=0;EPP=48.6112;EPPR=376.504;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.9477;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.860465;PAO=0;PQA=0;PQR=0;PRO=0;QA=848;QR=6918;RO=172;RPL=0;RPP=48.6112;RPPR=376.504;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=172;SRP=376.504;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:71:67,4:67:2699:4:161:0,-6.49785,-228.149 0|1:48:42,6:42:1689:6:238:-7.34421,0,-137.786 0|1:54:44,10:44:1774:10:408:-20.825,0,-143.616 0|0:20:19,1:19:756:1:41:0,-1.92603,-64.2616 dDocent_Contig_8859 8 . C G 273.348 . AB=0.194805;ABP=65.3062;AC=1;AF=0.125;AN=8;AO=16;CIGAR=1X1M1X;DP=266;DPB=266;DPRA=1.92308;EPP=37.7539;EPPR=543.707;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=0.722892;PAO=0;PQA=0;PQR=0;PRO=0;QA=612;QR=9612;RO=249;RPL=0;RPP=37.7539;RPPR=543.707;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=249;SRP=543.707;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:77:62,15:62:2382:15:573:-28.7328,0,-191.408 0|0:98:97,1:97:3740:1:39:0,-25.6044,-332.81 0|0:49:49,0:49:1897:0:0:0,-14.7505,-170.972 0|0:42:41,0:41:1593:0:0:0,-12.3422,-143.226 dDocent_Contig_8860 170 . C T 222.95 . AB=0.235294;ABP=34.0496;AC=2;AF=0.25;AN=8;AO=14;CIGAR=1X;DP=84;DPB=84;DPRA=2.77778;EPP=33.4109;EPPR=155.013;GTI=0;LEN=1;MEANALT=1;MQM=40;MQMR=58.0714;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.957143;PAO=0;PQA=0;PQR=0;PRO=0;QA=568;QR=2682;RO=70;RPL=14;RPP=33.4109;RPPR=155.013;RPR=0;RUN=1;SAF=0;SAP=33.4109;SAR=14;SRF=0;SRP=155.013;SRR=70;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:9:9,0:9:319:0:0:0,-2.70927,-28.947 0/1:24:15,9:15:568:9:366:-23.3646,0,-39.1301 0/0:24:22,2:22:862:2:81:0,-0.151866,-70.8169 0/1:27:24,3:24:933:3:121:-2.27335,0,-76.1414 dDocent_Contig_8862 79 . A T 139.261 . AB=0.272727;ABP=12.8806;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=93;DPB=93;DPRA=0.929577;EPP=16.0391;EPPR=191.928;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.833333;PAIREDR=0.770115;PAO=0;PQA=0;PQR=0;PRO=0;QA=243;QR=3444;RO=87;RPL=6;RPP=16.0391;RPPR=191.928;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=87;SRP=191.928;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:30:30,0:30:1186:0:0:0,-9.0309,-107.014 0/0:38:38,0:38:1499:0:0:0,-11.4391,-135.156 0/1:22:16,6:16:637:6:243:-15.6249,0,-51.0417 0/0:3:3,0:3:122:0:0:0,-0.90309,-11.3725 dDocent_Contig_8863 26 . A G 505.592 . AB=0.338462;ABP=17.7429;AC=4;AF=0.5;AN=8;AO=22;CIGAR=1X;DP=65;DPB=65;DPRA=0;EPP=50.7827;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=59.2727;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.136364;PAIREDR=0.674419;PAO=0;PQA=0;PQR=0;PRO=0;QA=845;QR=1703;RO=43;RPL=0;RPP=50.7827;RPPR=96.3836;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:15,2:15:592:2:81:-2.56822,0,-48.4958 0/1:19:15,4:15:600:4:137:-6.94039,0,-48.6186 0/1:18:8,10:8:315:10:393:-30.3028,0,-23.2939 0/1:11:5,6:5:196:6:234:-18.1173,0,-14.7023 dDocent_Contig_8864 15 . A T 87.2166 . AB=0.0759494;ABP=126.399;AC=0;AF=0;AN=8;AO=6;CIGAR=1M1X14M;DP=131;DPB=129.25;DPRA=2.19444;EPP=16.0391;EPPR=224.5;GTI=0;LEN=1;MEANALT=3;MQM=55;MQMR=59.1373;NS=4;NUMALT=4;ODDS=0;PAIRED=0.666667;PAIREDR=0.980392;PAO=0;PQA=0;PQR=0;PRO=0;QA=245;QR=4034;RO=102;RPL=0;RPP=16.0391;RPPR=224.5;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=102;SRP=224.5;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:53:42,6,1,0,4:42:1665:6,1,0,4:226,41,0,164:-5.88258,0,-135.259,-17.0471,-135.574,-153.79,-18.5258,-137.066,-154.091,-155.583,-5.09567,-123.654,-140.68,-142.172,-140.968 0|0:34:25,0,5,4,0:25:976:0,5,4,0:0,199,162,0:-5.92367,-13.4494,-93.0097,-6.08868,-85.563,-84.0578,0,-79.6456,-72.2022,-78.4415,-13.4494,-93.0097,-85.563,-79.6456,-93.0097 0|0:26:20,3,1,0,2:20:793:3,1,0,2:105,40,0,81:-2.25485,0,-64.4287,-6.80754,-63.8452,-71.8087,-8.27544,-65.3318,-72.1097,-73.5975,-1.69145,-58.7777,-65.556,-67.0432,-66.4411 0|0:18:15,0,2,0,0:15:600:0,2,0,0:0,79,0,0:0,-4.51545,-54.0371,-1.65957,-51.07,-50.468,-4.51545,-54.0371,-51.07,-54.0371,-4.51545,-54.0371,-51.07,-54.0371,-54.0371 dDocent_Contig_8865 107 . N A 121.138 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=7.37776;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=131;QR=0;RO=0;RPL=0;RPP=11.6962;RPPR=0;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:4:0,4:0:0:4:131:-12.1135,-1.20412,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_8866 12 . A C 237.063 . AB=0.126984;ABP=231.429;AC=2;AF=0.25;AN=8;AO=27;CIGAR=1X;DP=284;DPB=284;DPRA=0;EPP=53.2759;EPPR=283.978;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=53.293;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=0.703704;PAIREDR=0.390625;PAO=0;PQA=0;PQR=0;PRO=0;QA=1046;QR=9912;RO=256;RPL=0;RPP=61.6401;RPPR=558.907;RPR=27;RUN=1;SAF=26;SAP=53.2759;SAR=1;SRF=219;SRP=283.978;SRR=37;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:76:74,2:74:2818:2:81:0,-15.1925,-233.603 0/1:103:89,14:89:3493:14:537:-17.6587,0,-268.609 0/1:86:75,10:75:2891:10:389:-9.44551,0,-213.314 0/0:19:18,1:18:710:1:39:0,-1.82301,-58.8481 dDocent_Contig_8867 23 . T C 450.153 . AB=0.409091;ABP=6.16881;AC=3;AF=0.375;AN=8;AO=18;CIGAR=1X1M1X;DP=55;DPB=55;DPRA=1.33333;EPP=42.0968;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.777778;PAIREDR=0.783784;PAO=0;PQA=0;PQR=0;PRO=0;QA=695;QR=1429;RO=37;RPL=0;RPP=42.0968;RPPR=83.3548;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:21:11,10:11:421:10:382:-28.4089,0,-31.9148 0|1:9:4,5:4:161:5:194:-15.1234,0,-12.1662 0|1:14:11,3:11:423:3:119:-6.88097,0,-34.2042 0|0:11:11,0:11:424:0:0:0,-3.31133,-38.507 dDocent_Contig_8868 9 . T C 58674.4 . AB=0.138404;ABP=2735.49;AC=8;AF=1;AN=8;AO=333;CIGAR=1X1M1X5M;DP=2406;DPB=2419.38;DPRA=0;EPP=726.111;EPPR=155.013;GTI=0;LEN=1;MEANALT=20.5;MQM=59.8318;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=0.201201;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=13039;QR=2745;RO=70;RPL=0;RPP=726.111;RPPR=155.013;RPR=333;RUN=1;SAF=333;SAP=726.111;SAR=0;SRF=70;SRP=155.013;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:738:24,26,508,106:24:948:26,508,106:1018,19282,4143:-1831.06,-1756.25,-1826.44,-262.59,-258.569,-187.678,-1497.68,-1493.66,0,-1543.79 1|1:688:14,37,471,84:14:549:37,471,84:1431,17926,3313:-1686.91,-1575.54,-1609.55,-227.426,-156.998,-130.79,-1418.55,-1348.12,0,-1438.41 1|1:638:19,35,433,80:19:740:35,433,80:1355,16460,3127:-1534.28,-1430.44,-1480.72,-196.212,-147.463,-126.684,-1282.98,-1234.23,0,-1319.71 1|1:342:13,14,213,63:13:508:14,213,63:551,8146,2456:-822.581,-781.276,-818.825,-160.076,-156.621,-137.72,-624.654,-621.199,0,-647.453 dDocent_Contig_8869 40 . T C 221.38 . AB=0.192982;ABP=49.6779;AC=2;AF=0.25;AN=8;AO=12;CIGAR=1X;DP=108;DPB=108;DPRA=0.666667;EPP=29.068;EPPR=211.472;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=489;QR=3860;RO=96;RPL=0;RPP=29.068;RPPR=211.472;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=96;SRP=211.472;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:36:36,0:36:1440:0:0:0,-10.8371,-129.85 0/1:44:34,10:34:1365:10:408:-23.8353,0,-109.863 0/1:13:12,1:12:488:1:40:-0.0822893,0,-40.3575 0/0:15:14,1:14:567:1:41:0,-0.420883,-47.2768 dDocent_Contig_8870 18 . G A 249.933 . AB=0.153846;ABP=124.78;AC=3;AF=0.375;AN=8;AO=18;CIGAR=1X2M1X;DP=146;DPB=146;DPRA=1.34483;EPP=42.0968;EPPR=274.444;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.333333;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=715;QR=4775;RO=125;RPL=0;RPP=42.0968;RPPR=274.444;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=125;SRP=274.444;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:33:26,7:26:992:7:278:-15.4569,0,-79.6513 0|1:53:46,5:46:1789:5:197:-2.35136,0,-145.495 0|0:29:29,0:29:1093:0:0:0,-8.72987,-98.6649 0|1:31:24,6:24:901:6:240:-12.5371,0,-71.9582 dDocent_Contig_8871 41 . G T 410.401 . AB=0.179688;ABP=117.08;AC=2;AF=0.25;AN=8;AO=25;CIGAR=1X;DP=195;DPB=195;DPRA=3.08772;EPP=57.2971;EPPR=363.526;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.988235;PAO=0;PQA=0;PQR=0;PRO=0;QA=996;QR=6651;RO=170;RPL=0;RPP=57.2971;RPPR=354.993;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=169;SRP=363.526;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:99:80,19:80:3152:19:750:-38.018,0,-253.977 0/0:48:46,2:46:1784:2:82:0,-6.66976,-153.007 0/1:29:25,4:25:978:4:164:-6.42003,0,-79.5882 0/0:19:19,0:19:737:0:0:0,-5.71957,-66.643 dDocent_Contig_8872 157 . G T 115.886 . AB=0.209302;ABP=34.5724;AC=2;AF=0.25;AN=8;AO=9;CIGAR=2X;DP=57;DPB=57;DPRA=3.07143;EPP=22.5536;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=303;QR=1783;RO=47;RPL=0;RPP=22.5536;RPPR=105.07;RPR=9;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=105.07;SRR=47;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:25:21,4:21:786:4:160:-7.25805,0,-63.5293 0|1:18:13,5:13:506:5:143:-7.72846,0,-40.4693 0|0:9:9,0:9:337:0:0:0,-2.70927,-30.6788 0|0:5:4,0:4:154:0:0:0,-1.20412,-13.8289 dDocent_Contig_8873 48 . A C 125.169 . AB=0.26087;ABP=14.4341;AC=2;AF=0.25;AN=8;AO=6;CIGAR=1M1D1X;DP=37;DPB=35;DPRA=1.64286;EPP=16.0391;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=245;QR=1214;RO=31;RPL=0;RPP=16.0391;RPPR=70.3259;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:13:9,4:9:353:4:163:-11.145,0,-28.2155 0|1:10:8,2:8:303:2:82:-4.76938,0,-24.6114 0|0:12:12,0:12:477:0:0:0,-3.61236,-43.2809 0|0:2:2,0:2:81:0:0:0,-0.60206,-7.68573 dDocent_Contig_8874 7 . C T 2998.74 . AB=0.0120482;ABP=174.661;AC=0;AF=0;AN=8;AO=7;CIGAR=1X3M1X4M;DP=232;DPB=232;DPRA=0;EPP=18.2106;EPPR=72.4974;GTI=0;LEN=1;MEANALT=7.5;MQM=16.1429;MQMR=59.0312;NS=4;NUMALT=8;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=113;QR=1252;RO=32;RPL=0;RPP=18.2106;RPPR=72.4974;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:59:3,0,6,3,2,3,0,0,39:3:119:0,6,3,2,3,0,0,39:0,90,44,80,45,0,0,1078:-79.1604,-80.0635,-89.8684,-75.3698,-85.1751,-83.3689,-77.8048,-87.61,-82.9181,-86.7069,-74.0018,-83.8074,-79.114,-81.5489,-83.2053,-77.7163,-87.5215,-82.8296,-85.2637,-81.4603,-86.6184,-80.0635,-89.8684,-85.1751,-87.61,-83.8074,-87.5215,-89.8684,-80.0635,-89.8684,-85.1751,-87.61,-83.8074,-87.5215,-89.8684,-89.8684,-1.90551,-11.7402,-7.05889,-9.48633,-5.66266,-9.39738,-11.7402,-11.7402,0 0|0:83:7,0,1,0,15,0,0,0,54:7:275:0,1,0,15,0,0,0,54:0,23,0,578,0,0,0,1574:-135.477,-137.584,-160.213,-136.086,-158.715,-158.414,-137.584,-160.213,-158.715,-160.213,-96.2989,-118.932,-117.434,-118.932,-114.416,-137.584,-160.213,-158.715,-160.213,-118.932,-160.213,-137.584,-160.213,-158.715,-160.213,-118.932,-160.213,-160.213,-137.584,-160.213,-158.715,-160.213,-118.932,-160.213,-160.213,-160.213,-18.6594,-41.3067,-39.8114,-41.3067,0,-41.3067,-41.3067,-41.3067,-25.0511 0|0:57:11,0,0,0,5,0,3,0,35:11:425:0,0,0,5,0,3,0,35:0,0,0,198,0,116,0,888:-61.1169,-64.4283,-99.093,-64.4283,-99.093,-99.093,-64.4283,-99.093,-99.093,-99.093,-56.9462,-91.6125,-91.6125,-91.6125,-90.1073,-64.4283,-99.093,-99.093,-99.093,-91.6125,-99.093,-55.7452,-90.413,-90.413,-90.413,-82.9324,-90.413,-89.5099,-64.4283,-99.093,-99.093,-99.093,-91.6125,-99.093,-90.413,-99.093,0,-34.7041,-34.7041,-34.7041,-27.2513,-34.7041,-26.0229,-34.7041,-24.168 0|0:33:11,2,0,0,2,0,0,2,15:11:433:2,0,0,2,0,0,2,15:66,0,0,81,0,0,34,428:-29.5182,-28.0274,-63.0801,-32.8295,-63.6822,-68.4789,-32.8295,-63.6822,-68.4789,-68.4789,-31.8272,-62.6786,-67.4745,-67.4745,-66.8725,-32.8295,-63.6822,-68.4789,-68.4789,-67.4745,-68.4789,-32.8295,-63.6822,-68.4789,-68.4789,-67.4745,-68.4789,-68.4789,-30.9157,-61.7687,-66.5648,-66.5648,-65.562,-66.5648,-66.5648,-65.9627,0,-30.9412,-35.7368,-35.7368,-34.7463,-35.7368,-35.7368,-33.8335,-31.2214 dDocent_Contig_8875 11 . G A 1046.96 . AB=0.197026;ABP=217.486;AC=3;AF=0.375;AN=8;AO=55;CIGAR=1X;DP=322;DPB=322;DPRA=0;EPP=122.441;EPPR=582.793;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.4869;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=0.927273;PAIREDR=0.966292;PAO=0;PQA=0;PQR=0;PRO=0;QA=2193;QR=10506;RO=267;RPL=0;RPP=122.441;RPPR=582.793;RPR=55;RUN=1;SAF=55;SAP=122.441;SAR=0;SRF=267;SRP=582.793;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:160:127,33:127:5017:33:1300:-69.1044,0,-403.245 0/0:53:51,2:51:1969:2:81:0,-8.26886,-169.72 0/1:57:43,14:43:1712:14:567:-34.2138,0,-137.14 0/1:52:46,6:46:1808:6:245:-6.77591,0,-144.156 dDocent_Contig_8876 29 . C T 1216.54 . AB=0.389831;ABP=15.4503;AC=4;AF=0.5;AN=8;AO=46;CIGAR=1X;DP=118;DPB=118;DPRA=0;EPP=102.898;EPPR=159.356;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.5;PAIREDR=0.847222;PAO=0;PQA=0;PQR=0;PRO=0;QA=1813;QR=2864;RO=72;RPL=0;RPP=102.898;RPPR=159.356;RPR=46;RUN=1;SAF=46;SAP=102.898;SAR=0;SRF=72;SRP=159.356;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:15,12:15:597:12:480:-35.4234,0,-45.9419 0/1:35:19,16:19:752:16:612:-44.863,0,-57.4552 0/1:44:28,16:28:1111:16:639:-44.5979,0,-87.0258 0/1:12:10,2:10:404:2:82:-4.16732,0,-33.1077 dDocent_Contig_8878 65 . C T 62.4613 . AB=0.0967742;ABP=46.79;AC=0;AF=0;AN=8;AO=3;CIGAR=1X3M4I8M;DP=108;DPB=110.167;DPRA=1.20779;EPP=9.52472;EPPR=209.3;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=6.93889e-18;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=108;QR=3330;RO=95;RPL=3;RPP=9.52472;RPPR=209.3;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=95;SRP=209.3;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:52:50,0,0:50:1744:0,0:0,0:0,-15.0515,-157.007,-15.0515,-157.007,-157.007 0|0:31:23,3,5:23:815:3,5:108,182:-7.94509,-6.0581,-71.5393,0,-57.5743,-64.882 0|0:17:15,0,0:15:527:0,0:0,0:0,-4.51545,-47.4502,-4.51545,-47.4502,-47.4502 0|0:8:7,0,0:7:244:0,0:0,0:0,-2.10721,-22.1942,-2.10721,-22.1942,-22.1942 dDocent_Contig_8879 16 . A G 96.5767 . AB=0.175;ABP=39.7082;AC=2;AF=0.25;AN=8;AO=7;CIGAR=1X;DP=59;DPB=59;DPRA=2.10526;EPP=18.2106;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.980769;PAO=0;PQA=0;PQR=0;PRO=0;QA=266;QR=2026;RO=52;RPL=0;RPP=18.2106;RPPR=115.927;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:14,2:14:529:2:64:-1.25828,0,-43.1249 0/0:14:14,0:14:549:0:0:0,-4.21442,-49.753 0/1:24:19,5:19:753:5:202:-11.3374,0,-60.8686 0/0:5:5,0:5:195:0:0:0,-1.50515,-17.9219 dDocent_Contig_8880 11 . T A 886.208 . AB=0.111111;ABP=73.9451;AC=0;AF=0;AN=8;AO=6;CIGAR=2X;DP=102;DPB=102;DPRA=0;EPP=16.0391;EPPR=133.299;GTI=0;LEN=1;MEANALT=2;MQM=38.6667;MQMR=59.95;NS=4;NUMALT=2;ODDS=0;PAIRED=0.333333;PAIREDR=0.983333;PAO=0;PQA=0;PQR=0;PRO=0;QA=220;QR=2360;RO=60;RPL=0;RPP=16.0391;RPPR=133.299;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:8:7,0,1:7:277:0,1:0,39:-1.48832,-3.59553,-26.3978,0,-23.1926,-22.8916 0|0:54:28,6,20:28:1124:6,20:220,766:-53.946,-46.3867,-137.206,0,-76.685,-86.6516 0|0:30:21,0,9:21:803:0,9:0,345:-22.1478,-28.4694,-94.3492,0,-66.2605,-63.5512 0|0:10:4,0,6:4:156:0,6:0,232:-17.8927,-19.0968,-31.924,0,-13.213,-11.4068 dDocent_Contig_8881 12 . A T 94.0943 . AB=0.227273;ABP=17.2236;AC=2;AF=0.25;AN=8;AO=5;CIGAR=1X;DP=66;DPB=66;DPRA=0.5;EPP=13.8677;EPPR=135.47;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.8;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=194;QR=2418;RO=61;RPL=0;RPP=13.8677;RPPR=135.47;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=61;SRP=135.47;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:10,1:10:379:1:38:-0.485939,0,-31.1414 0/0:34:34,0:34:1355:0:0:0,-10.235,-122.203 0/0:10:10,0:10:402:0:0:0,-3.0103,-36.5399 0/1:11:7,4:7:282:4:156:-11.1051,0,-22.4408 dDocent_Contig_8882 7 . C T 124.493 . AB=0.222222;ABP=27.1378;AC=1;AF=0.125;AN=8;AO=11;CIGAR=1X;DP=157;DPB=157;DPRA=1.03896;EPP=26.8965;EPPR=320.045;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.8562;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.979452;PAO=0;PQA=0;PQR=0;PRO=0;QA=391;QR=5587;RO=146;RPL=0;RPP=26.8965;RPPR=320.045;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=146;SRP=320.045;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:44:41,3:41:1586:3:117:0,-2.33494,-132.095 0/0:39:39,0:39:1491:0:0:0,-11.7402,-134.46 0/0:38:38,0:38:1436:0:0:0,-11.4391,-129.495 0/1:36:28,8:28:1074:8:274:-14.1483,0,-86.1255 dDocent_Contig_8883 9 . G A 340.33 . AB=0.219512;ABP=59.0449;AC=3;AF=0.375;AN=8;AO=19;CIGAR=1X;DP=111;DPB=111;DPRA=0;EPP=44.2683;EPPR=202.786;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.947368;PAIREDR=0.945652;PAO=0;PQA=0;PQR=0;PRO=0;QA=733;QR=3521;RO=92;RPL=0;RPP=44.2683;RPPR=202.786;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=92;SRP=202.786;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:29:28,1:28:1074:1:37:0,-5.03204,-93.2674 0/1:18:15,3:15:583:3:116:-5.39916,0,-47.3945 0/1:19:17,2:17:643:2:78:-1.6839,0,-52.4853 0/1:45:32,13:32:1221:13:502:-31.9822,0,-96.635 dDocent_Contig_8884 22 . G T 35.1711 . AB=0.117647;ABP=46.1843;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=88;DPB=88;DPRA=1.93333;EPP=13.8677;EPPR=183.243;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=205;QR=3230;RO=83;RPL=0;RPP=13.8677;RPPR=183.243;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=83;SRP=183.243;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:34:30,4:30:1160:4:164:-4.91488,0,-94.4383 0/0:25:25,0:25:989:0:0:0,-7.52575,-89.3076 0/0:24:23,1:23:884:1:41:0,-3.13015,-75.7677 0/0:5:5,0:5:197:0:0:0,-1.50515,-18.106 dDocent_Contig_8886 129 . T G 224.619 . AB=0.243243;ABP=24.1968;AC=5;AF=0.625;AN=8;AO=12;CIGAR=1X;DP=40;DPB=40;DPRA=0;EPP=29.068;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.928571;PAO=0;PQA=0;PQR=0;PRO=0;QA=418;QR=972;RO=28;RPL=0;RPP=29.068;RPPR=63.8115;RPR=12;RUN=1;SAF=0;SAP=29.068;SAR=12;SRF=0;SRP=63.8115;SRR=28;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:15,3:15:527:3:103:-4.19106,0,-42.3419 0/1:8:5,3:5:173:3:101:-7.01489,0,-13.5011 0/1:11:8,3:8:272:3:106:-6.57783,0,-21.5 1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0 dDocent_Contig_8887 160 . C T 865.047 . AB=0.290323;ABP=50.3624;AC=4;AF=0.5;AN=8;AO=36;CIGAR=1X;DP=124;DPB=124;DPRA=0;EPP=81.1833;EPPR=145.538;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1442;QR=3490;RO=88;RPL=36;RPP=81.1833;RPPR=145.538;RPR=0;RUN=1;SAF=0;SAP=81.1833;SAR=36;SRF=0;SRP=194.1;SRR=88;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:39:26,13:26:1050:13:514:-34.8597,0,-83.0508 0/1:45:37,8:37:1461:8:326:-16.1635,0,-118.198 0/1:26:20,6:20:782:6:244:-14.512,0,-62.8619 0/1:14:5,9:5:197:9:358:-28.3674,0,-13.8888 dDocent_Contig_8889 7 . C A 35.1852 . AB=0.139535;ABP=51.5402;AC=2;AF=0.25;AN=8;AO=7;CIGAR=1X;DP=97;DPB=97;DPRA=0.495726;EPP=18.2106;EPPR=198.443;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=243;QR=3386;RO=90;RPL=0;RPP=18.2106;RPPR=198.443;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=90;SRP=198.443;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:27,4:27:1002:4:154:-4.90153,0,-81.1506 0/0:39:39,0:39:1480:0:0:0,-11.7402,-133.478 0/0:15:14,1:14:536:1:39:0,-0.618885,-44.6884 0/1:12:10,2:10:368:2:50:-1.13437,0,-29.8532 dDocent_Contig_8890 9 . C T 113.766 . AB=0.5;ABP=3.0103;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X;DP=151;DPB=151;DPRA=0;EPP=22.5536;EPPR=311.359;GTI=0;LEN=1;MEANALT=1;MQM=41.2222;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.985915;PAO=0;PQA=0;PQR=0;PRO=0;QA=341;QR=5369;RO=142;RPL=0;RPP=22.5536;RPPR=311.359;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=142;SRP=311.359;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:37:36,1:36:1372:1:39:0,-7.49199,-120.117 0/1:10:5,5:5:195:5:185:-13.0755,0,-14.9139 0/0:57:55,2:55:2036:2:78:0,-10.2311,-176.541 0/0:47:46,1:46:1766:1:39:0,-10.275,-155.319 dDocent_Contig_8891 14 . A G 1388.73 . AB=0.0571429;ABP=122.255;AC=0;AF=0;AN=8;AO=4;CIGAR=2X3M;DP=98;DPB=98;DPRA=0;EPP=11.6962;EPPR=75.5163;GTI=0;LEN=1;MEANALT=2.33333;MQM=53.25;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=0.75;PAIREDR=0.902439;PAO=0;PQA=0;PQR=0;PRO=0;QA=152;QR=1589;RO=41;RPL=0;RPP=11.6962;RPPR=92.0407;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=39;SRP=75.5163;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:36:11,0,1,24:11:428:0,1,24:0,40,944:-74.3254,-77.6367,-112.808,-74.3414,-109.512,-109.211,0,-35.1623,-31.8663,-27.9376 0|0:24:11,0,1,11:11:435:0,1,11:0,33,424:-31.5225,-34.8338,-70.6394,-32.4424,-68.245,-67.944,0,-35.833,-33.4423,-32.5217 0|0:28:14,3,0,11:14:532:3,0,11:118,0,442:-32.3136,-30.2378,-72.9437,-36.528,-73.8468,-80.1527,0,-37.4145,-43.7136,-40.4023 0|0:10:5,0,2,3:5:194:0,2,3:0,79,117:-8.10905,-9.6142,-25.5509,-3.11125,-19.0487,-18.4466,0,-15.9337,-9.43078,-15.0306 dDocent_Contig_8893 72 . T C 443.571 . AB=0.411765;ABP=6.45911;AC=2;AF=0.25;AN=8;AO=21;CIGAR=1X;DP=69;DPB=69;DPRA=2.83333;EPP=48.6112;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.0952381;PAIREDR=0.854167;PAO=0;PQA=0;PQR=0;PRO=0;QA=694;QR=1647;RO=48;RPL=21;RPP=48.6112;RPPR=107.241;RPR=0;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:13,16:13:443:16:525:-38.8351,0,-31.467 0/1:22:17,5:17:584:5:169:-8.91975,0,-46.2614 0/0:15:15,0:15:511:0:0:0,-4.51545,-46.3135 0/0:3:3,0:3:109:0:0:0,-0.90309,-10.1675 dDocent_Contig_8894 11 . G A 35.0859 . AB=0;ABP=0;AC=0;AF=0;AN=8;AO=6;CIGAR=2X;DP=251;DPB=251;DPRA=1.24194;EPP=16.0391;EPPR=506.792;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=54.25;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.75431;PAO=0;PQA=0;PQR=0;PRO=0;QA=240;QR=9221;RO=232;RPL=0;RPP=16.0391;RPPR=506.792;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=232;SRP=506.792;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:101:97,0,0:97:3849:0,0:0,0:0,-29.1999,-340.078,-29.1999,-340.078,-340.078 0|0:77:69,6,0:69:2734:6,0:240,0:0,-0.997057,-211.815,-20.7711,-213.621,-233.393 0|0:50:44,0,6:44:1769:0,6:0,225:-5.20732,-18.4526,-159.104,0,-141.022,-139.216 0|0:23:22,0,1:22:869:0,1:0,30:0,-6.62266,-70.8486,-4.2245,-68.7242,-68.4231 dDocent_Contig_8895 24 . C A 3529.13 . AB=0.171779;ABP=155.533;AC=0;AF=0;AN=8;AO=29;CIGAR=1X1M1X2M2X1M1X;DP=179;DPB=179;DPRA=0;EPP=65.983;EPPR=85.5263;GTI=0;LEN=1;MEANALT=2.25;MQM=33.4483;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.551724;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1135;QR=1500;RO=38;RPL=0;RPP=65.983;RPPR=85.5263;RPR=29;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:72:13,10,49:13:521:10,49:386,1949:-156.661,-139.853,-179.768,0,-22.317,-28.2513 0|0:53:17,10,26:17:661:10,26:392,1036:-80.3119,-67.7757,-119.079,0,-36.7757,-46.5907 0|0:38:8,8,21:8:318:8,21:320,846:-67.3684,-48.7458,-72.5182,0,-5.19414,-19.8897 0|0:16:0,1,15:0:0:1,15:37,597:-53.9694,-53.5707,-53.2697,-4.51545,-4.01694,0 dDocent_Contig_8896 7 . C A 311.215 . AB=0.202128;ABP=75.4543;AC=3;AF=0.375;AN=8;AO=19;CIGAR=1X1M;DP=127;DPB=127;DPRA=0.949495;EPP=44.2683;EPPR=233.186;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=6.93889e-18;PAIRED=1;PAIREDR=0.971698;PAO=0;PQA=0;PQR=0;PRO=0;QA=706;QR=4075;RO=106;RPL=0;RPP=44.2683;RPPR=233.186;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=106;SRP=233.186;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:57:48,0,9:48:1853:0,9:0,349:-14.6122,-29.0616,-181.243,0,-152.569,-149.86 0|0:33:33,0,0:33:1262:0,0:0,0:0,-9.93399,-113.872,-9.93399,-113.872,-113.872 0|1:23:17,2,4:17:656:2,4:78,148:-6.97618,-5.6753,-58.9599,0,-47.458,-52.6661 0|1:14:8,0,6:8:304:0,6:0,209:-14.9311,-17.3393,-42.2879,0,-25.3102,-23.504 dDocent_Contig_8898 108 . T C 329.971 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=11;CIGAR=2X1D3M;DP=11;DPB=9.16667;DPRA=0;EPP=26.8965;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=40.8182;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=358;QR=0;RO=0;RPL=0;RPP=26.8965;RPPR=0;RPR=11;RUN=1;SAF=0;SAP=26.8965;SAR=11;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. 1|1:5:0,5:0:0:5:161:-14.5229,-1.50515,0 1|1:4:0,4:0:0:4:134:-12.0998,-1.20412,0 1|1:2:0,2:0:0:2:63:-5.89681,-0.60206,0 dDocent_Contig_8900 44 . T C 32.5995 . AB=0.136364;ABP=28.2783;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=50;DPB=50;DPRA=4;EPP=11.6962;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=162;QR=1798;RO=46;RPL=0;RPP=11.6962;RPPR=102.898;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:19,3:19:750:3:121:-4.65733,0,-61.1987 0/0:18:17,1:17:643:1:41:0,-1.32397,-54.0961 0/0:8:8,0:8:323:0:0:0,-2.40824,-29.4386 0/0:2:2,0:2:82:0:0:0,-0.60206,-7.77968 dDocent_Contig_8901 116 . A T 105.428 . AB=0.228571;ABP=25.4075;AC=3;AF=0.375;AN=8;AO=8;CIGAR=1X;DP=43;DPB=43;DPRA=1.45833;EPP=20.3821;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=280;QR=1223;RO=35;RPL=0;RPP=20.3821;RPPR=79.0118;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=79.0118;SRR=35;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:8,3:8:282:3:105:-6.48483,0,-22.41 0/1:16:14,2:14:491:2:70:-1.83092,0,-39.7043 0/0:8:8,0:8:270:0:0:0,-2.40824,-24.6283 0/1:8:5,3:5:180:3:105:-7.38792,0,-14.1438 dDocent_Contig_8902 1 . N G 100.73 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=108;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:108:-10.0724,-0.90309,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_8903 12 . A C 313.975 . AB=0.246914;ABP=48.0751;AC=5;AF=0.625;AN=8;AO=21;CIGAR=1X1M1X;DP=82;DPB=82;DPRA=0;EPP=48.6112;EPPR=135.47;GTI=0;LEN=1;MEANALT=1;MQM=38.4286;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=0.380952;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=847;QR=2408;RO=61;RPL=0;RPP=48.6112;RPPR=135.47;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=61;SRP=135.47;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:25:21,4:21:823:4:164:-0.228388,0,-66.8592 0|1:29:22,7:22:858:7:278:-11.9991,0,-68.8008 0|1:27:18,9:18:727:9:364:-20.1107,0,-57.6267 1|1:1:0,1:0:0:1:41:-2.68308,-0.30103,0 dDocent_Contig_8904 20 . C T 176.853 . AB=0.0666667;ABP=125.337;AC=0;AF=0;AN=8;AO=14;CIGAR=1X3M1X;DP=538;DPB=538;DPRA=0.894977;EPP=33.4109;EPPR=919.863;GTI=0;LEN=1;MEANALT=5.66667;MQM=46;MQMR=59.6357;NS=4;NUMALT=4;ODDS=0;PAIRED=0.928571;PAIREDR=0.855204;PAO=0;PQA=0;PQR=0;PRO=0;QA=546;QR=17366;RO=442;RPL=0;RPP=33.4109;RPPR=962.801;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=437;SRP=919.863;SRR=5;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:167:140,4,5,3,12:140:5512:4,5,3,12:160,189,121,456:0,-29.1475,-481.114,-26.935,-467.109,-478.597,-32.1663,-472.344,-470.128,-484.434,-4.75595,-444.935,-442.72,-447.954,-454.316 0|0:146:124,14,0,8,0:124:4865:14,0,8,0:443,0,309,0:0,-3.87055,-399.616,-37.3277,-403.83,-437.334,-11.9192,-378.453,-411.956,-409.548,-37.3277,-403.83,-437.334,-411.956,-437.334 0|0:150:121,7,4,3,11:121:4767:7,4,3,11:241,160,123,431:0,-17.6696,-407.639,-23.4218,-396.747,-414.307,-26.2678,-399.593,-405.359,-417.455,-0.972173,-374.307,-380.072,-382.918,-389.76 0|0:75:57,1,5,0,11:57:2222:1,5,0,11:41,197,0,443:-19.3841,-33.284,-215.602,-23.1345,-202.479,-204.232,-36.5428,-215.903,-205.737,-219.161,0,-179.389,-169.224,-182.647,-179.336 dDocent_Contig_8905 95 . A T 113.47 . AB=0.315789;ABP=8.61041;AC=2;AF=0.25;AN=8;AO=6;CIGAR=1X;DP=42;DPB=42;DPRA=0.826087;EPP=16.0391;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=203;QR=1216;RO=36;RPL=6;RPP=16.0391;RPPR=81.1833;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:4,5:4:140:5:168:-12.7416,0,-10.2357 0/1:10:9,1:9:308:1:35:-0.488329,0,-25.0422 0/0:12:12,0:12:413:0:0:0,-3.61236,-37.5007 0/0:11:11,0:11:355:0:0:0,-3.31133,-32.2608 dDocent_Contig_8906 27 . T G 38.5867 . AB=0;ABP=0;AC=0;AF=0;AN=8;AO=3;CIGAR=1X1M2X;DP=117;DPB=117;DPRA=3.15385;EPP=9.52472;EPPR=235.358;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=4226;RO=107;RPL=0;RPP=9.52472;RPPR=235.358;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=107;SRP=235.358;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:41:38,3,0:38:1510:3,0:122,0:0,-0.969737,-124.783,-11.4391,-125.686,-135.75 0|0:48:44,0,4:44:1738:0,4:0,160:-0.333477,-13.5788,-156.587,0,-143.407,-142.203 0|0:15:12,0,3:12:465:0,3:0,108:-5.55513,-9.16749,-47.387,0,-38.5846,-37.6815 0|0:13:13,0,0:13:513:0,0:0,0:0,-3.91339,-46.5144,-3.91339,-46.5144,-46.5144 dDocent_Contig_8907 209 . N G 111.937 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=113;QR=0;RO=0;RPL=3;RPP=9.52472;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1:0,1:0:0:1:33:-3.29913,-0.30103,0 1/1:2:0,2:0:0:2:80:-7.59179,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_8908 25 . A G 131.495 . AB=0.555556;ABP=3.25157;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=38;DPB=38;DPRA=0.931034;EPP=13.8677;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.6;PAIREDR=0.969697;PAO=0;PQA=0;PQR=0;PRO=0;QA=191;QR=1314;RO=33;RPL=0;RPP=13.8677;RPPR=74.6689;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:9:9,0:9:364:0:0:0,-2.70927,-33.1244 0/1:9:4,5:4:147:5:191:-14.8485,0,-10.8781 0/0:10:10,0:10:405:0:0:0,-3.0103,-36.8104 0/0:10:10,0:10:398:0:0:0,-3.0103,-36.1783 dDocent_Contig_8909 16 . G C 2083.65 . AB=0.0810811;ABP=172.209;AC=0;AF=0;AN=8;AO=9;CIGAR=1X1M1X;DP=169;DPB=169;DPRA=0;EPP=14.8328;EPPR=129.68;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.888889;PAIREDR=0.916667;PAO=0;PQA=0;PQR=0;PRO=0;QA=353;QR=3190;RO=84;RPL=0;RPP=22.5536;RPPR=185.414;RPR=9;RUN=1;SAF=8;SAP=14.8328;SAR=1;SRF=77;SRP=129.68;SRR=7;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:17:12,0,5:12:460:0,5:0,194:-12.7143,-16.3266,-54.0752,0,-38.1348,-36.6297 0|0:41:21,0,20:21:807:0,20:0,784:-58.5378,-64.8595,-131.101,0,-66.629,-60.6084 0|0:34:9,5,20:9:322:5,20:191,754:-59.0617,-46.0997,-70.8384,0,-10.5554,-20.2137 0|0:77:42,4,31:42:1601:4,31:162,1195:-85.4497,-84.7324,-214.842,0,-117.934,-121.962 dDocent_Contig_8910 30 . C A 312.27 . AB=0.311111;ABP=16.956;AC=3;AF=0.375;AN=8;AO=14;CIGAR=1X;DP=75;DPB=75;DPRA=0.5;EPP=33.4109;EPPR=135.47;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.967213;PAO=0;PQA=0;PQR=0;PRO=0;QA=545;QR=2444;RO=61;RPL=0;RPP=33.4109;RPPR=135.47;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=61;SRP=135.47;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:30:30,0:30:1213:0:0:0,-9.0309,-109.441 0/1:29:20,9:20:791:9:353:-23.3999,0,-62.7725 0/1:14:10,4:10:405:4:155:-10.1074,0,-32.5951 0/1:2:1,1:1:35:1:37:-3.09577,0,-2.89657 dDocent_Contig_8911 70 . G A 35.8186 . AB=0.2;ABP=14.7363;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=50;DPB=50;DPRA=1.28571;EPP=9.52472;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=0.978723;PAO=0;PQA=0;PQR=0;PRO=0;QA=105;QR=1586;RO=47;RPL=3;RPP=9.52472;RPPR=105.07;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:14:14,0:14:486:0:0:0,-4.21442,-44.0708 0/1:15:12,3:12:384:3:105:-5.28071,0,-30.3519 0/0:10:10,0:10:340:0:0:0,-3.0103,-30.9288 0/0:11:11,0:11:376:0:0:0,-3.31133,-34.1699 dDocent_Contig_8912 9 . C T 87.883 . AB=0.285714;ABP=8.59409;AC=1;AF=0.125;AN=8;AO=6;CIGAR=2X;DP=68;DPB=68;DPRA=0.925926;EPP=16.0391;EPPR=137.642;GTI=0;LEN=1;MEANALT=1;MQM=39.1667;MQMR=57.6774;NS=4;NUMALT=1;ODDS=0;PAIRED=0.666667;PAIREDR=0.951613;PAO=0;PQA=0;PQR=0;PRO=0;QA=234;QR=2403;RO=62;RPL=0;RPP=16.0391;RPPR=137.642;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:24:23,1:23:888:1:40:0,-5.42741,-78.4317 0|0:18:18,0:18:700:0:0:0,-5.41854,-60.8897 0|1:14:10,4:10:397:4:160:-10.4873,0,-26.8764 0|0:12:11,1:11:418:1:34:0,-2.71356,-37.0718 dDocent_Contig_8913 19 . G T 1620.04 . AB=0.455696;ABP=5.70403;AC=4;AF=0.5;AN=8;AO=72;CIGAR=1X;DP=158;DPB=158;DPRA=0;EPP=159.356;EPPR=187.585;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=0.986111;PAIREDR=0.905882;PAO=0;PQA=0;PQR=0;PRO=0;QA=2398;QR=3389;RO=85;RPL=0;RPP=159.356;RPPR=187.585;RPR=72;RUN=1;SAF=72;SAP=159.356;SAR=0;SRF=85;SRP=187.585;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:34:23,11:23:931:11:372:-23.5681,0,-73.8566 0/1:56:22,34:22:867:34:1146:-86.5804,0,-61.476 0/1:38:25,12:25:1001:12:398:-24.5974,0,-78.8377 0/1:30:15,15:15:590:15:482:-34.6559,0,-44.4044 dDocent_Contig_8914 117 . C A 266.378 . AB=0.317073;ABP=14.9269;AC=1;AF=0.125;AN=8;AO=23;CIGAR=1X;DP=232;DPB=232;DPRA=1.46512;EPP=52.9542;EPPR=456.848;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=0.990431;PAO=0;PQA=0;PQR=0;PRO=0;QA=787;QR=7077;RO=209;RPL=0;RPP=52.9542;RPPR=456.848;RPR=23;RUN=1;SAF=0;SAP=52.9542;SAR=23;SRF=0;SRP=456.848;SRR=209;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:41:28,13:28:914:13:445:-28.0357,0,-70.2143 0/0:45:43,2:43:1465:2:69:0,-6.99369,-125.591 0/0:103:95,8:95:3248:8:273:0,-6.10365,-267.653 0/0:43:43,0:43:1450:0:0:0,-12.9443,-130.791 dDocent_Contig_8915 35 . T C 2600.7 . AB=0.481081;ABP=3.58545;AC=4;AF=0.5;AN=8;AO=89;CIGAR=1X;DP=185;DPB=185;DPRA=0;EPP=196.271;EPPR=211.472;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3577;QR=3880;RO=96;RPL=0;RPP=196.271;RPPR=211.472;RPR=89;RUN=1;SAF=89;SAP=196.271;SAR=0;SRF=96;SRP=211.472;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:54:27,27:27:1090:27:1084:-81.5922,0,-82.13 0/1:58:23,35:23:932:35:1399:-108.702,0,-66.7228 0/1:55:40,15:40:1625:15:608:-38.5011,0,-129.917 0/1:18:6,12:6:233:12:486:-38.6727,0,-15.9156 dDocent_Contig_8916 8 . C T 42.7039 . AB=0.138889;ABP=43.7857;AC=2;AF=0.25;AN=8;AO=5;CIGAR=3X2M1X2M1X;DP=56;DPB=56;DPRA=1.8;EPP=13.8677;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=197;QR=1995;RO=51;RPL=0;RPP=13.8677;RPPR=113.755;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:13:11,2:11:418:2:80:-3.6784,0,-34.0533 0|1:23:20,3:20:792:3:117:-3.98652,0,-64.6799 0|0:11:11,0:11:436:0:0:0,-3.31133,-39.5955 0|0:9:9,0:9:349:0:0:0,-2.70927,-31.7694 dDocent_Contig_8917 8 . C A 540.111 . AB=0.389831;ABP=9.23028;AC=4;AF=0.5;AN=8;AO=23;CIGAR=1X;DP=59;DPB=59;DPRA=0;EPP=52.9542;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=841;QR=1353;RO=35;RPL=0;RPP=52.9542;RPPR=79.0118;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:1,8:1:38:8:289:-23.6482,0,-1.088 0/1:17:7,10:7:267:10:369:-28.4421,0,-19.275 0/1:13:9,3:9:349:3:111:-6.38672,0,-27.8049 0/1:20:18,2:18:699:2:72:-0.816036,0,-57.2235 dDocent_Contig_8918 16 . C T 273.268 . AB=0.229508;ABP=41.7764;AC=3;AF=0.375;AN=8;AO=14;CIGAR=1X;DP=69;DPB=69;DPRA=2.54167;EPP=33.4109;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=555;QR=2195;RO=55;RPL=0;RPP=33.4109;RPPR=122.441;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:26,5:26:1036:5:203:-9.32113,0,-84.1991 0/1:21:15,6:15:604:6:230:-14.7404,0,-48.3764 0/0:8:8,0:8:317:0:0:0,-2.40824,-28.8957 0/1:9:6,3:6:238:3:122:-8.66322,0,-19.0817 dDocent_Contig_8919 179 . T G 52.7762 . AB=0.3;ABP=6.48466;AC=2;AF=0.25;AN=8;AO=3;CIGAR=1X;DP=44;DPB=44;DPRA=0.294118;EPP=9.52472;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=123;QR=1628;RO=41;RPL=3;RPP=9.52472;RPPR=92.0407;RPR=0;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=92.0407;SRR=41;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:23:23,0:23:912:0:0:0,-6.92369,-82.3871 0/0:11:11,0:11:444:0:0:0,-3.31133,-40.3156 0/1:7:6,1:6:231:1:41:-1.98736,0,-19.0469 0/1:3:1,2:1:41:2:82:-6.87659,0,-3.19148 dDocent_Contig_8920 77 . C A 37.3803 . AB=0.142857;ABP=34.0313;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=74;DPB=74;DPRA=1.82609;EPP=11.6962;EPPR=155.013;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=150;QR=2648;RO=70;RPL=4;RPP=11.6962;RPPR=155.013;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=70;SRP=155.013;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:29:29,0:29:1104:0:0:0,-8.72987,-99.6612 0/1:28:24,4:24:908:4:150:-5.43685,0,-73.6023 0/0:13:13,0:13:485:0:0:0,-3.91339,-43.9909 0/0:4:4,0:4:151:0:0:0,-1.20412,-13.9577 dDocent_Contig_8921 36 . C T 548.861 . AB=0.206107;ABP=101.29;AC=2;AF=0.25;AN=8;AO=30;CIGAR=1X;DP=245;DPB=245;DPRA=1.23718;EPP=68.1545;EPPR=467.705;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1189;QR=8349;RO=214;RPL=0;RPP=68.1545;RPPR=467.705;RPR=30;RUN=1;SAF=30;SAP=68.1545;SAR=0;SRF=214;SRP=467.705;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:74:58,15:58:2273:15:598:-32.0724,0,-182.663 0/1:57:45,12:45:1761:12:478:-26.2116,0,-141.559 0/0:62:59,3:59:2289:3:113:0,-8.12545,-195.641 0/0:52:52,0:52:2026:0:0:0,-15.6536,-182.528 dDocent_Contig_8922 15 . G A 216.32 . AB=0.150442;ABP=122.941;AC=4;AF=0.5;AN=8;AO=17;CIGAR=1X;DP=113;DPB=113;DPRA=0;EPP=39.9253;EPPR=211.472;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=658;QR=3818;RO=96;RPL=0;RPP=39.9253;RPPR=211.472;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=96;SRP=211.472;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:41:34,7:34:1307:7:277:-12.9565,0,-105.54 0/1:52:44,8:44:1780:8:304:-12.0564,0,-144.755 0/1:10:9,1:9:366:1:41:-1.08427,0,-30.2949 0/1:10:9,1:9:365:1:36:-0.587975,0,-30.2042 dDocent_Contig_8923 11 . T C 3242.17 . AB=0.0826873;ABP=588.404;AC=0;AF=0;AN=8;AO=32;CIGAR=1M1X1M1X;DP=387;DPB=387;DPRA=0;EPP=72.4974;EPPR=293.988;GTI=0;LEN=1;MEANALT=5;MQM=60;MQMR=60;NS=4;NUMALT=4;ODDS=0;PAIRED=0.84375;PAIREDR=0.947761;PAO=0;PQA=0;PQR=0;PRO=0;QA=1278;QR=5338;RO=134;RPL=0;RPP=72.4974;RPPR=293.988;RPR=32;RUN=1;SAF=32;SAP=72.4974;SAR=0;SRF=134;SRP=293.988;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:125:59,6,14,9,37:59:2334:6,14,9,37:242,558,355,1485:-104.591,-102.403,-292.671,-76.4031,-248.529,-264.263,-93.1437,-265.269,-239.269,-282.508,0,-172.126,-146.126,-162.867,-180.937 0|0:80:27,11,9,19,14:27:1089:11,9,19,14:435,360,768,568:-55.1908,-27.5223,-113.979,-33.6638,-87.6353,-120.723,0,-53.9723,-60.114,-84.0493,-16.4758,-70.4479,-76.5898,-42.9263,-102.03 0|0:108:21,9,19,40,18:21:838:9,19,40,18:359,756,1574,718:-123.142,-99.8992,-166.207,-67.6637,-107.116,-130.961,0,-39.4526,-7.21769,-56.9752,-70.3364,-109.789,-77.5537,-9.89,-133.935 0|0:74:27,6,9,17,10:27:1077:6,9,17,10:242,354,689,395:-48.6924,-36.8709,-123.762,-27.7029,-96.4509,-113.691,0,-68.75,-59.5815,-83.5818,-24.3203,-93.0684,-83.8998,-56.1988,-110.007 dDocent_Contig_8925 28 . T C 1641.51 . AB=0.478992;ABP=3.46649;AC=4;AF=0.5;AN=8;AO=57;CIGAR=1X;DP=119;DPB=119;DPRA=0;EPP=126.784;EPPR=137.642;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2289;QR=2251;RO=62;RPL=0;RPP=126.784;RPPR=137.642;RPR=57;RUN=1;SAF=57;SAP=126.784;SAR=0;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:46:25,21:25:901:21:853:-63.233,0,-67.5502 0/1:38:22,16:22:790:16:635:-46.0428,0,-59.973 0/1:23:10,13:10:376:13:519:-40.1331,0,-27.2669 0/1:12:5,7:5:184:7:282:-22.1402,0,-13.3054 dDocent_Contig_8926 34 . C T 72.1267 . AB=0.307692;ABP=7.18621;AC=2;AF=0.25;AN=8;AO=4;CIGAR=1X;DP=67;DPB=67;DPRA=0.240741;EPP=11.6962;EPPR=139.813;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=153;QR=2526;RO=63;RPL=0;RPP=11.6962;RPPR=139.813;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=63;SRP=139.813;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:17:17,0:17:694:0:0:0,-5.11751,-62.7876 0/0:37:37,0:37:1470:0:0:0,-11.1381,-132.545 0/1:5:3,2:3:121:2:77:-5.80399,0,-9.77505 0/1:8:6,2:6:241:2:76:-4.80643,0,-19.6584 dDocent_Contig_8928 26 . T C 168.576 . AB=0.266667;ABP=17.1973;AC=2;AF=0.25;AN=8;AO=11;CIGAR=1X;DP=82;DPB=82;DPRA=0;EPP=26.8965;EPPR=157.185;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.887324;PAO=0;PQA=0;PQR=0;PRO=0;QA=440;QR=2844;RO=71;RPL=0;RPP=26.8965;RPPR=157.185;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=71;SRP=157.185;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:16,5:16:635:5:201:-12.1493,0,-51.16 0/0:30:28,2:28:1133:2:82:0,-1.25122,-94.4675 0/0:22:21,1:21:831:1:41:0,-2.52809,-71.006 0/1:9:6,3:6:245:3:116:-8.10624,0,-19.7202 dDocent_Contig_8929 11 . G A 753.017 . AB=0.280702;ABP=50.6303;AC=3;AF=0.375;AN=8;AO=32;CIGAR=1X3M1I5M;DP=130;DPB=133.556;DPRA=2.375;EPP=72.4974;EPPR=213.643;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.989691;PAO=0;PQA=0;PQR=0;PRO=0;QA=1265;QR=3839;RO=97;RPL=0;RPP=72.4974;RPPR=213.643;RPR=32;RUN=1;SAF=32;SAP=72.4974;SAR=0;SRF=97;SRP=213.643;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:28:16,12:16:631:12:475:-34.6722,0,-48.6971 0|1:66:50,15:50:1979:15:589:-33.5772,0,-158.56 0|0:16:16,0:16:643:0:0:0,-4.81648,-58.2054 0|1:20:15,5:15:586:5:201:-12.4503,0,-47.0569 dDocent_Contig_8930 28 . G A 3191.92 . AB=0.524476;ABP=3.75437;AC=5;AF=0.625;AN=8;AO=103;CIGAR=1X;DP=171;DPB=171;DPRA=0;EPP=226.672;EPPR=148.499;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=0.893204;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4073;QR=2694;RO=67;RPL=0;RPP=226.672;RPPR=148.499;RPR=103;RUN=1;SAF=103;SAP=226.672;SAR=0;SRF=67;SRP=148.499;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:28:0,28:0:0:28:1090:-98.381,-8.42884,0 0/1:46:20,25:20:808:25:998:-76.1628,0,-59.08 0/1:48:24,24:24:969:24:950:-71.3529,0,-73.0585 0/1:49:23,26:23:917:26:1035:-78.6937,0,-68.0839 dDocent_Contig_8931 36 . A G 212.029 . AB=0.180556;ABP=66.8275;AC=2;AF=0.25;AN=8;AO=13;CIGAR=1X;DP=111;DPB=111;DPRA=1.84615;EPP=31.2394;EPPR=215.815;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.979592;PAO=0;PQA=0;PQR=0;PRO=0;QA=506;QR=3819;RO=98;RPL=0;RPP=31.2394;RPPR=215.815;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=98;SRP=215.815;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:58:49,9:49:1901:9:352:-14.5818,0,-153.847 0/0:35:35,0:35:1365:0:0:0,-10.536,-123.12 0/1:14:10,4:10:400:4:154:-10.019,0,-32.1457 0/0:4:4,0:4:153:0:0:0,-1.20412,-14.1379 dDocent_Contig_8932 34 . C T 1845.99 . AB=0.511811;ABP=3.16418;AC=4;AF=0.5;AN=8;AO=65;CIGAR=1X;DP=127;DPB=127;DPRA=0;EPP=144.156;EPPR=137.642;GTI=0;LEN=1;MEANALT=1;MQM=59.7538;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.923077;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2544;QR=2396;RO=62;RPL=0;RPP=144.156;RPPR=137.642;RPR=65;RUN=1;SAF=65;SAP=144.156;SAR=0;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:41:26,15:26:1019:15:594:-41.458,0,-79.6634 0/1:30:17,13:17:657:13:487:-35.1329,0,-50.432 0/1:40:14,26:14:528:26:1029:-80.864,0,-35.8048 0/1:16:5,11:5:192:11:434:-34.5416,0,-12.8328 dDocent_Contig_8933 7 . C A 147.218 . AB=0.0888889;ABP=69.0713;AC=3;AF=0.375;AN=8;AO=8;CIGAR=1X;DP=101;DPB=101;DPRA=0.942308;EPP=20.3821;EPPR=204.957;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.795699;PAO=0;PQA=0;PQR=0;PRO=0;QA=308;QR=3557;RO=93;RPL=0;RPP=20.3821;RPPR=204.957;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=93;SRP=204.957;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:35:35,0:35:1336:0:0:0,-10.536,-120.526 0/1:45:41,4:41:1565:4:152:-0.503279,0,-127.572 0/0:17:17,0:17:656:0:0:0,-5.11751,-59.377 1/1:4:0,4:0:0:4:156:-14.4173,-1.20412,0 dDocent_Contig_8935 132 . C T 158.308 . AB=0.179104;ABP=62.9365;AC=2;AF=0.25;AN=8;AO=12;CIGAR=1X;DP=83;DPB=83;DPRA=4.1875;EPP=29.068;EPPR=157.185;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.8028;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.985915;PAO=0;PQA=0;PQR=0;PRO=0;QA=430;QR=2692;RO=71;RPL=0;RPP=29.068;RPPR=157.185;RPR=12;RUN=1;SAF=0;SAP=29.068;SAR=12;SRF=0;SRP=157.185;SRR=71;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:32:26,6:26:973:6:212:-9.79188,0,-78.244 0/1:35:29,6:29:1109:6:218:-9.43674,0,-89.5778 0/0:12:12,0:12:454:0:0:0,-3.61236,-41.1619 0/0:4:4,0:4:156:0:0:0,-1.20412,-14.4173 dDocent_Contig_8936 25 . C T 241.746 . AB=0.218182;ABP=40.9518;AC=2;AF=0.25;AN=8;AO=12;CIGAR=1X;DP=87;DPB=87;DPRA=1.71875;EPP=29.068;EPPR=165.871;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=482;QR=2989;RO=75;RPL=0;RPP=29.068;RPPR=165.871;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=75;SRP=165.871;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:17,8:17:687:8:324:-22.0034,0,-54.6317 0/0:18:18,0:18:694:0:0:0,-5.41854,-62.7724 0/1:30:26,4:26:1051:4:158:-5.56907,0,-85.8479 0/0:14:14,0:14:557:0:0:0,-4.21442,-50.4722 dDocent_Contig_8937 7 . C A 3073.38 . AB=0.476323;ABP=4.75837;AC=4;AF=0.5;AN=8;AO=171;CIGAR=2X1M;DP=359;DPB=359;DPRA=0;EPP=374.332;EPPR=335.246;GTI=0;LEN=1;MEANALT=4.5;MQM=30.5965;MQMR=54.3268;NS=4;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0.326797;PAO=0;PQA=0;PQR=0;PRO=0;QA=5095;QR=5788;RO=153;RPL=0;RPP=374.332;RPPR=335.246;RPR=171;RUN=1;SAF=171;SAP=374.332;SAR=0;SRF=153;SRP=335.246;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:121:46,7,60:46:1723:7,60:260,1939:-122.967,-119.373,-255.937,0,-121.284,-120.656 0|1:126:56,9,59:56:2141:9,59:346,1578:-93.0508,-86.9223,-250.579,0,-143.379,-148.589 0|1:68:32,4,28:32:1210:4,28:154,923:-59.0199,-58.5098,-155.198,0,-87.789,-89.497 0|1:44:19,1,24:19:714:1,24:36,655:-39.6982,-43.4155,-100.442,0,-55.3832,-50.1547 dDocent_Contig_8938 29 . T G 370.746 . AB=0.234568;ABP=52.5788;AC=3;AF=0.375;AN=8;AO=19;CIGAR=1X3M1X;DP=99;DPB=99;DPRA=1.5;EPP=44.2683;EPPR=172.385;GTI=0;LEN=1;MEANALT=1.66667;MQM=52.4211;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.631579;PAIREDR=0.75641;PAO=0;PQA=0;PQR=0;PRO=0;QA=737;QR=3118;RO=78;RPL=0;RPP=44.2683;RPPR=172.385;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=78;SRP=172.385;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:38:32,6:32:1286:6:229:-8.96755,0,-104.57 0|0:18:18,0:18:720:0:0:0,-5.41854,-65.1282 0|1:27:14,11:14:557:11:429:-30.9057,0,-42.5572 0|1:16:14,2:14:555:2:79:-2.57106,0,-45.4781 dDocent_Contig_8939 9 . A G 110.832 . AB=0.160714;ABP=59.0033;AC=2;AF=0.25;AN=8;AO=12;CIGAR=1X;DP=96;DPB=96;DPRA=0;EPP=29.068;EPPR=183.243;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=456;QR=3177;RO=83;RPL=0;RPP=29.068;RPPR=183.243;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=83;SRP=183.243;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:25:23,2:23:879:2:78:0,-0.122277,-72.0253 0/1:36:30,6:30:1140:6:223:-9.59015,0,-92.0611 0/0:15:13,1:13:507:1:38:0,-0.657014,-42.3014 0/1:20:17,3:17:651:3:117:-4.88978,0,-52.905 dDocent_Contig_8940 109 . A G 62.1336 . AB=0.123077;ABP=83.2212;AC=1;AF=0.125;AN=8;AO=10;CIGAR=1X3M1X;DP=139;DPB=139;DPRA=4.34615;EPP=24.725;EPPR=263.587;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=345;QR=4015;RO=120;RPL=0;RPP=24.725;RPPR=263.587;RPR=10;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=263.587;SRR=120;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:65:49,8,8:49:1640:8,8:275,268:-7.58701,0,-130.395,-0.638118,-111.1,-131.026 0|0:48:45,2,0:45:1522:2,0:70,0:0,-7.77096,-130.664,-13.5463,-131.266,-136.962 0|0:17:17,0,0:17:544:0,0:0,0:0,-5.11751,-49.2669,-5.11751,-49.2669,-49.2669 0|0:9:9,0,0:9:309:0,0:0,0:0,-2.70927,-28.1436,-2.70927,-28.1436,-28.1436 dDocent_Contig_8941 8 . C A 315.415 . AB=0.333333;ABP=13.1438;AC=2;AF=0.25;AN=8;AO=14;CIGAR=1M1D1M1X1M2X;DP=61;DPB=59;DPRA=2.21053;EPP=33.4109;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=58.5714;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.928571;PAIREDR=0.978723;PAO=0;PQA=0;PQR=0;PRO=0;QA=523;QR=1794;RO=47;RPL=0;RPP=33.4109;RPPR=105.07;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:7:7,0:7:268:0:0:0,-2.10721,-24.483 0|1:32:21,11:21:800:11:416:-27.9677,0,-62.6911 0|1:10:7,3:7:270:3:107:-6.97171,0,-21.6552 0|0:12:12,0:12:456:0:0:0,-3.61236,-41.3872 dDocent_Contig_8942 10 . G A 180.388 . AB=0.180328;ABP=57.1547;AC=1;AF=0.125;AN=8;AO=11;CIGAR=2X2M2I2M;DP=134;DPB=137.667;DPRA=2.50685;EPP=26.8965;EPPR=265.758;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=417;QR=4729;RO=121;RPL=0;RPP=26.8965;RPPR=265.758;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=121;SRP=265.758;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:22:22,0:22:863:0:0:0,-6.62266,-77.9818 0|1:61:48,11:48:1884:11:417:-19.7377,0,-151.632 0|0:42:42,0:42:1641:0:0:0,-12.6433,-147.935 0|0:9:9,0:9:341:0:0:0,-2.70927,-31.0416 dDocent_Contig_8946 16 . C T 62.2963 . AB=0.2;ABP=22.5536;AC=2;AF=0.25;AN=8;AO=8;CIGAR=1X;DP=92;DPB=92;DPRA=0;EPP=20.3821;EPPR=185.414;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=292;QR=3338;RO=84;RPL=0;RPP=20.3821;RPPR=185.414;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=84;SRP=185.414;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:52:50,2:50:1978:2:78:0,-8.25009,-170.814 0/1:19:17,2:17:684:2:76:-1.4951,0,-56.1709 0/0:15:14,1:14:555:1:34:0,-1.11654,-46.8888 0/1:6:3,3:3:121:3:104:-7.89583,0,-9.47381 dDocent_Contig_8947 54 . C T 2270.16 . AB=0.478261;ABP=3.76559;AC=4;AF=0.5;AN=8;AO=88;CIGAR=1X;DP=184;DPB=184;DPRA=0;EPP=194.1;EPPR=209.3;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3204;QR=3707;RO=95;RPL=88;RPP=194.1;RPPR=209.3;RPR=0;RUN=1;SAF=88;SAP=194.1;SAR=0;SRF=95;SRP=209.3;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:86:47,38:47:1837:38:1395:-100.14,0,-139.868 0/1:70:31,39:31:1214:39:1423:-107.272,0,-88.4664 0/1:20:13,7:13:497:7:233:-15.2695,0,-39.0454 0/1:8:4,4:4:159:4:153:-11.7327,0,-12.2837 dDocent_Contig_8948 107 . N T 65.5375 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=69;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:69:-6.55266,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_8949 17 . C T 2026.42 . AB=0.641026;ABP=16.4846;AC=5;AF=0.625;AN=8;AO=88;CIGAR=1X;DP=119;DPB=119;DPRA=0;EPP=194.1;EPPR=54.0749;GTI=0;LEN=1;MEANALT=1;MQM=41.6932;MQMR=58.5806;NS=4;NUMALT=1;ODDS=0;PAIRED=0.727273;PAIREDR=0.83871;PAO=0;PQA=0;PQR=0;PRO=0;QA=3216;QR=1218;RO=31;RPL=0;RPP=194.1;RPPR=70.3259;RPR=88;RUN=1;SAF=88;SAP=194.1;SAR=0;SRF=29;SRP=54.0749;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:14,15:14:550:15:523:-29.7581,0,-41.0158 0/1:32:8,24:8:308:24:903:-59.6912,0,-18.3757 0/1:17:6,11:6:241:11:411:-27.9488,0,-16.9486 1/1:41:3,38:3:119:38:1379:-90.6414,-1.24722,0 dDocent_Contig_8950 18 . G A 1554.56 . AB=0.311558;ABP=64.3899;AC=4;AF=0.5;AN=8;AO=62;CIGAR=1X;DP=199;DPB=199;DPRA=0;EPP=137.642;EPPR=300.502;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.983871;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2460;QR=5460;RO=137;RPL=0;RPP=137.642;RPPR=300.502;RPR=62;RUN=1;SAF=62;SAP=137.642;SAR=0;SRF=137;SRP=300.502;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:86:61,25:61:2424:25:982:-62.7958,0,-192.43 0/1:66:41,25:41:1639:25:998:-70.2516,0,-127.878 0/1:25:16,9:16:626:9:358:-25.0568,0,-49.1453 0/1:22:19,3:19:771:3:122:-4.74983,0,-63.087 dDocent_Contig_8952 78 . A G 658.68 . AB=0.352273;ABP=19.6912;AC=3;AF=0.375;AN=8;AO=31;CIGAR=1X;DP=103;DPB=103;DPRA=1.95556;EPP=70.3259;EPPR=159.356;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1075;QR=2502;RO=72;RPL=31;RPP=70.3259;RPPR=159.356;RPR=0;RUN=1;SAF=31;SAP=70.3259;SAR=0;SRF=72;SRP=159.356;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:41:26,15:26:927:15:522:-34.9667,0,-71.4054 0/1:25:14,11:14:481:11:374:-26.4615,0,-36.0912 0/1:22:17,5:17:579:5:179:-9.83773,0,-45.8086 0/0:15:15,0:15:515:0:0:0,-4.51545,-46.675 dDocent_Contig_8953 71 . G A 554.232 . AB=0.302083;ABP=35.6729;AC=4;AF=0.5;AN=8;AO=29;CIGAR=1X;DP=96;DPB=96;DPRA=0;EPP=65.983;EPPR=148.499;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=58.806;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.925373;PAO=0;PQA=0;PQR=0;PRO=0;QA=1004;QR=2294;RO=67;RPL=29;RPP=65.983;RPPR=148.499;RPR=0;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=67;SRP=148.499;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:40:34,6:34:1165:6:212:-7.38388,0,-92.9331 0/1:25:10,15:10:340:15:515:-39.1486,0,-23.4035 0/1:21:15,6:15:511:6:206:-12.5549,0,-39.9472 0/1:10:8,2:8:278:2:71:-3.73176,0,-22.3477 dDocent_Contig_8954 8 . C T 84.2395 . AB=0.1875;ABP=30.1537;AC=2;AF=0.25;AN=8;AO=6;CIGAR=1X;DP=115;DPB=115;DPRA=0.385542;EPP=16.0391;EPPR=239.701;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.666667;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=230;QR=4186;RO=109;RPL=0;RPP=16.0391;RPPR=239.701;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=109;SRP=239.701;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:36:36,0:36:1387:0:0:0,-10.8371,-125.11 0/0:47:47,0:47:1792:0:0:0,-14.1484,-161.531 0/1:20:16,4:16:620:4:152:-8.02903,0,-50.119 0/1:12:10,2:10:387:2:78:-3.79111,0,-31.5752 dDocent_Contig_8955 22 . T G 149.766 . AB=0.352941;ABP=6.20364;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=62;DPB=62;DPRA=3.13333;EPP=20.3821;EPPR=120.27;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=318;QR=2180;RO=54;RPL=0;RPP=20.3821;RPPR=120.27;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:6:6,0:6:244:0:0:0,-1.80618,-22.3386 0/0:9:9,0:9:364:0:0:0,-2.70927,-33.1244 0/0:30:28,2:28:1126:2:80:0,-1.43932,-94.0324 0/1:17:11,6:11:446:6:238:-16.6755,0,-35.3783 dDocent_Contig_8956 14 . C T 52.3165 . AB=0.148148;ABP=32.0437;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=123;DPB=123;DPRA=1.79545;EPP=18.2106;EPPR=254.901;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.857143;PAIREDR=0.896552;PAO=0;PQA=0;PQR=0;PRO=0;QA=284;QR=4630;RO=116;RPL=0;RPP=18.2106;RPPR=254.901;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=116;SRP=254.901;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:52:49,3:49:1973:3:121:0,-4.37336,-166.478 0/0:24:24,0:24:966:0:0:0,-7.22472,-87.2404 0/1:27:23,4:23:900:4:163:-6.93062,0,-73.1809 0/0:20:20,0:20:791:0:0:0,-6.0206,-71.5059 dDocent_Contig_8958 22 . A G 130.626 . AB=0.145161;ABP=70.8163;AC=1;AF=0.125;AN=8;AO=12;CIGAR=1X;DP=254;DPB=254;DPRA=1.03226;EPP=29.068;EPPR=528.507;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=485;QR=9666;RO=242;RPL=0;RPP=29.068;RPPR=528.507;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=242;SRP=528.507;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:62:53,9:53:2095:9:364:-14.4605,0,-170.08 0/0:62:62,0:62:2467:0:0:0,-18.6639,-222.179 0/0:79:77,2:77:3088:2:81:0,-16.0956,-270.314 0/0:51:50,1:50:2016:1:40:0,-11.3569,-177.631 dDocent_Contig_8959 41 . G T 264.208 . AB=0.160584;ABP=140.098;AC=3;AF=0.375;AN=8;AO=22;CIGAR=1X2M2X;DP=176;DPB=176;DPRA=1.17094;EPP=50.7827;EPPR=335.246;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.993464;PAO=0;PQA=0;PQR=0;PRO=0;QA=800;QR=6039;RO=153;RPL=0;RPP=50.7827;RPPR=335.246;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=153;SRP=335.246;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:100:87,13:87:3438:13:456:-11.2594,0,-279.39 0|0:39:38,0:38:1499:0:0:0,-11.4391,-134.761 0|1:16:13,3:13:504:3:113:-5.72293,0,-40.888 0|1:21:15,6:15:598:6:231:-14.8364,0,-47.8391 dDocent_Contig_8960 78 . G T 362.694 . AB=0.06;ABP=87.0897;AC=0;AF=0;AN=8;AO=3;CIGAR=2X4M;DP=82;DPB=82;DPRA=0;EPP=9.52472;EPPR=113.755;GTI=0;LEN=1;MEANALT=3.5;MQM=60;MQMR=60;NS=4;NUMALT=4;ODDS=1.38778e-17;PAIRED=0.666667;PAIREDR=0.627451;PAO=0;PQA=0;PQR=0;PRO=0;QA=113;QR=1864;RO=51;RPL=3;RPP=9.52472;RPPR=113.755;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:32:21,2,8,0,1:21:770:2,8,0,1:74,281,0,38:-16.5334,-16.7982,-79.1433,0,-56.8786,-60.5246,-22.8551,-79.7454,-62.9329,-85.7999,-19.7363,-76.6283,-59.8158,-82.6828,-82.3818 0|0:23:19,2,0,1,0:19:691:2,0,1,0:71,0,37,0:-0.0805678,0,-55.8693,-5.80014,-56.4714,-62.2561,-2.76315,-53.4439,-59.2286,-58.9276,-5.80014,-56.4714,-62.2561,-59.2286,-62.2561 0|0:18:6,7,0,2,2:6:220:7,0,2,2:242,0,76,75:-17.8405,0,-15.8722,-19.6467,-17.9794,-37.6323,-13.409,-11.7439,-31.3967,-30.7947,-13.4997,-11.8348,-31.4871,-25.251,-30.885 0|0:9:5,3,0,1,0:5:183:3,0,1,0:108,0,38,0:-7.29209,0,-14.0405,-8.79724,-14.9436,-23.753,-5.67576,-11.8248,-20.6347,-20.3337,-8.79724,-14.9436,-23.753,-20.6347,-23.753 dDocent_Contig_8961 11 . G A 121.279 . AB=0.384615;ABP=4.51363;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=216;DPB=216;DPRA=0.192118;EPP=13.8677;EPPR=461.191;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.4028;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.957346;PAO=0;PQA=0;PQR=0;PRO=0;QA=193;QR=8328;RO=211;RPL=0;RPP=13.8677;RPPR=461.191;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=211;SRP=461.191;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:94:94,0:94:3704:0:0:0,-28.2968,-333.123 0/0:54:54,0:54:2132:0:0:0,-16.2556,-191.656 0/0:55:55,0:55:2188:0:0:0,-16.5566,-197.09 0/1:13:8,5:8:304:5:193:-13.8269,0,-23.8006 dDocent_Contig_8962 7 . C T 1648.09 . AB=0.610526;ABP=13.0905;AC=4;AF=0.5;AN=8;AO=58;CIGAR=1X;DP=95;DPB=95;DPRA=0;EPP=128.956;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2216;QR=1436;RO=37;RPL=0;RPP=128.956;RPPR=83.3548;RPR=58;RUN=1;SAF=58;SAP=128.956;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:42:19,23:19:735:23:884:-67.2364,0,-53.8368 0/1:38:9,29:9:351:29:1102:-88.0428,0,-20.5127 0/1:10:6,4:6:233:4:156:-11.407,0,-18.3298 0/1:5:3,2:3:117:2:74:-5.52028,0,-9.40523 dDocent_Contig_8963 9 . A C 1485.75 . AB=0.546392;ABP=4.82359;AC=4;AF=0.5;AN=8;AO=53;CIGAR=1X;DP=97;DPB=97;DPRA=0;EPP=118.098;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2042;QR=1678;RO=44;RPL=0;RPP=118.098;RPPR=98.5551;RPR=53;RUN=1;SAF=53;SAP=118.098;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:15,9:15:566:9:351:-24.7271,0,-44.0518 0/1:25:15,10:15:575:10:390:-27.933,0,-44.5669 0/1:23:11,12:11:420:12:468:-35.5489,0,-31.2286 0/1:25:3,22:3:117:22:833:-67.7595,0,-3.38463 dDocent_Contig_8966 22 . A G 107.874 . AB=0.193548;ABP=28.2974;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=185;DPB=185;DPRA=1.20238;EPP=18.2106;EPPR=389.532;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=251;QR=7088;RO=178;RPL=0;RPP=18.2106;RPPR=389.532;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=178;SRP=389.532;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:25,6:25:1007:6:235:-12.1854,0,-81.595 0/0:70:69,1:69:2760:1:16:0,-19.4721,-246.907 0/0:55:55,0:55:2194:0:0:0,-16.5566,-197.623 0/0:29:29,0:29:1127:0:0:0,-8.72987,-101.707 dDocent_Contig_8967 14 . G T 40.0666 . AB=0.133333;ABP=38.0434;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=112;DPB=112;DPRA=1.09756;EPP=11.6962;EPPR=237.529;GTI=0;LEN=1;MEANALT=1;MQM=54;MQMR=57.7593;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.851852;PAO=0;PQA=0;PQR=0;PRO=0;QA=160;QR=4258;RO=108;RPL=0;RPP=11.6962;RPPR=237.529;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=108;SRP=237.529;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:41:41,0:41:1621:0:0:0,-12.3422,-144.911 0/1:30:26,4:26:1030:4:160:-5.70559,0,-83.9591 0/0:25:25,0:25:1011:0:0:0,-7.52575,-90.9732 0/0:16:16,0:16:596:0:0:0,-4.81648,-53.7232 dDocent_Contig_8968 23 . T A 712.009 . AB=0.464286;ABP=3.63072;AC=4;AF=0.5;AN=8;AO=26;CIGAR=1X;DP=56;DPB=56;DPRA=0;EPP=59.4686;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1044;QR=1214;RO=30;RPL=0;RPP=59.4686;RPPR=68.1545;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:4,8:4:164:8:321:-25.6458,0,-11.5375 0/1:15:6,9:6:243:9:363:-28.519,0,-17.7325 0/1:15:11,4:11:442:4:163:-10.543,0,-35.6192 0/1:14:9,5:9:365:5:197:-13.8911,0,-29.0004 dDocent_Contig_8969 11 . A T 48.5705 . AB=0.1875;ABP=16.582;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=67;DPB=67;DPRA=0.941176;EPP=9.52472;EPPR=141.985;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.984375;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=2579;RO=64;RPL=0;RPP=9.52472;RPPR=141.985;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=64;SRP=141.985;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:25:25,0:25:1014:0:0:0,-7.52575,-91.5525 0/0:14:14,0:14:559:0:0:0,-4.21442,-50.6514 0/0:12:12,0:12:480:0:0:0,-3.61236,-43.5506 0/1:16:13,3:13:526:3:122:-6.55601,0,-42.8703 dDocent_Contig_8971 46 . G C 262.089 . AB=0.111111;ABP=62.1226;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1M1X4M;DP=99;DPB=100.833;DPRA=2.66667;EPP=16.0391;EPPR=181.071;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=240;QR=3195;RO=82;RPL=0;RPP=16.0391;RPPR=181.071;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=82;SRP=181.071;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:43:42,0,1:42:1651:0,1:0,40:0,-12.6433,-148.438,-8.94861,-145.143,-144.841 0|0:42:27,11,4:27:1051:11,4:421,159:-26.4084,0,-83.0533,-21.4418,-73.273,-106.614 0|0:11:11,0,0:11:414:0,0:0,0:0,-3.31133,-37.6048,-3.31133,-37.6048,-37.6048 0|1:3:2,0,1:2:79:0,1:0,41:-3.19148,-3.79354,-10.2846,0,-6.89557,-6.59454 dDocent_Contig_8972 30 . C A 1315.47 . AB=0.534884;ABP=3.91929;AC=4;AF=0.5;AN=8;AO=46;CIGAR=1X;DP=86;DPB=86;DPRA=0;EPP=102.898;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1816;QR=1568;RO=40;RPL=0;RPP=102.898;RPPR=89.8692;RPR=46;RUN=1;SAF=46;SAP=102.898;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:9,12:9:348:12:478:-37.0494,0,-25.3516 0/1:24:9,15:9:360:15:605:-47.5638,0,-25.5388 0/1:16:11,5:11:418:5:193:-12.9231,0,-33.1395 0/1:25:11,14:11:442:14:540:-41.4087,0,-32.6104 dDocent_Contig_8973 158 . C G 601.259 . AB=0.333333;ABP=21.1059;AC=3;AF=0.375;AN=8;AO=28;CIGAR=1X;DP=114;DPB=114;DPRA=0;EPP=63.8115;EPPR=162.447;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1087;QR=3206;RO=85;RPL=28;RPP=63.8115;RPPR=162.447;RPR=0;RUN=1;SAF=0;SAP=63.8115;SAR=28;SRF=0;SRP=187.585;SRR=85;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:39:36,3:36:1380:3:122:0,-0.367677,-113.103 0/1:28:24,4:24:925:4:159:-6.26328,0,-75.1333 0/1:19:7,12:7:265:12:478:-37.6523,0,-18.4898 0/1:28:18,9:18:636:9:328:-21.6078,0,-49.3213 dDocent_Contig_8974 80 . A G 98.9278 . AB=0.277778;ABP=10.7311;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=42;DPB=42;DPRA=2.25;EPP=13.8677;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=185;QR=1333;RO=37;RPL=5;RPP=13.8677;RPPR=83.3548;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:15:15,0:15:542:0:0:0,-4.51545,-49.1164 0/1:18:13,5:13:475:5:185:-11.5915,0,-37.6733 0/0:7:7,0:7:247:0:0:0,-2.10721,-22.5712 0/0:2:2,0:2:69:0:0:0,-0.60206,-6.55266 dDocent_Contig_8975 98 . N C 102.615 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=5I3X2I7X;DP=3;DPB=5.1;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=110;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:3:0,3:0:0:3:110:-10.261,-0.90309,0 .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. dDocent_Contig_8976 40 . A C 2564.69 . AB=0.517857;ABP=3.47562;AC=4;AF=0.5;AN=8;AO=87;CIGAR=1X;DP=168;DPB=168;DPRA=0;EPP=191.928;EPPR=178.9;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3480;QR=3145;RO=81;RPL=0;RPP=191.928;RPPR=178.9;RPR=87;RUN=1;SAF=87;SAP=191.928;SAR=0;SRF=81;SRP=178.9;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:65:27,38:27:1030:38:1508:-116.393,0,-73.4249 0/1:43:11,32:11:433:32:1279:-102.43,0,-26.3792 0/1:34:23,11:23:900:11:447:-30.3505,0,-71.0758 0/1:26:20,6:20:782:6:246:-14.6933,0,-62.8714 dDocent_Contig_8978 14 . A G 1075.21 . AB=0.215768;ABP=172.124;AC=4;AF=0.5;AN=8;AO=52;CIGAR=1X;DP=241;DPB=241;DPRA=0;EPP=115.927;EPPR=413.419;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2059;QR=7554;RO=189;RPL=0;RPP=115.927;RPPR=413.419;RPR=52;RUN=1;SAF=52;SAP=115.927;SAR=0;SRF=189;SRP=413.419;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:72:65,7:65:2608:7:287:-4.53107,0,-213.168 0/1:104:67,37:67:2674:37:1449:-99.3485,0,-209.474 0/1:32:27,5:27:1068:5:203:-9.01989,0,-86.7797 0/1:33:30,3:30:1204:3:120:-1.25332,0,-98.7016 dDocent_Contig_8979 78 . C T 49.6726 . AB=0.166667;ABP=26.1727;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=45;DPB=45;DPRA=3.42857;EPP=11.6962;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=147;QR=1497;RO=41;RPL=4;RPP=11.6962;RPPR=92.0407;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:20,4:20:728:4:147:-6.36516,0,-58.6232 0/0:6:6,0:6:218:0:0:0,-1.80618,-19.9726 0/0:9:9,0:9:331:0:0:0,-2.70927,-30.1407 0/0:6:6,0:6:220:0:0:0,-1.80618,-20.1555 dDocent_Contig_8980 38 . G T 240.186 . AB=0.409091;ABP=4.58955;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X;DP=160;DPB=160;DPRA=0.478261;EPP=22.5536;EPPR=328.731;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=352;QR=5886;RO=150;RPL=0;RPP=22.5536;RPPR=328.731;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=150;SRP=328.731;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:13,9:13:529:9:352:-25.4165,0,-41.3342 0/0:69:68,0:68:2655:0:0:0,-20.47,-238.671 0/0:37:37,0:37:1445:0:0:0,-11.1381,-130.305 0/0:32:32,0:32:1257:0:0:0,-9.63296,-113.393 dDocent_Contig_8981 16 . A C 1000.54 . AB=0.5;ABP=3.0103;AC=4;AF=0.5;AN=8;AO=38;CIGAR=1X;DP=76;DPB=76;DPRA=0;EPP=85.5263;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.894737;PAO=0;PQA=0;PQR=0;PRO=0;QA=1433;QR=1435;RO=38;RPL=0;RPP=85.5263;RPPR=85.5263;RPR=38;RUN=1;SAF=38;SAP=85.5263;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:33:11,22:11:414:22:841:-66.0732,0,-27.6753 0/1:14:11,3:11:421:3:116:-6.60312,0,-34.0273 0/1:18:14,4:14:528:4:124:-6.04374,0,-42.4441 0/1:11:2,9:2:72:9:352:-28.7285,0,-3.52458 dDocent_Contig_8982 53 . G T 105.491 . AB=0.5;ABP=3.0103;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=130;DPB=130;DPRA=0.25;EPP=13.8677;EPPR=274.444;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=166;QR=4861;RO=125;RPL=5;RPP=13.8677;RPPR=274.444;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=125;SRP=274.444;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:37:37,0:37:1422:0:0:0,-11.1381,-128.227 0/0:46:46,0:46:1806:0:0:0,-13.8474,-162.752 0/0:37:37,0:37:1450:0:0:0,-11.1381,-130.755 0/1:10:5,5:5:183:5:166:-12.2481,0,-13.8113 dDocent_Contig_8983 10 . T G 339.74 . AB=0.411765;ABP=5.30951;AC=2;AF=0.25;AN=8;AO=18;CIGAR=1M1D3M1X;DP=87;DPB=84;DPRA=0;EPP=42.0968;EPPR=152.842;GTI=0;LEN=1;MEANALT=1;MQM=51;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=0.444444;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=686;QR=2666;RO=69;RPL=0;RPP=42.0968;RPPR=152.842;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=69;SRP=152.842;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:38:35,3:35:1357:3:117:0,-0.528759,-111.503 0|1:28:16,12:16:621:12:453:-32.1141,0,-47.8014 0|0:15:14,1:14:532:1:39:0,-0.734768,-44.4425 0|1:6:4,2:4:156:2:77:-5.25722,0,-12.6111 dDocent_Contig_8984 12 . T A 2028.8 . AB=0.461039;ABP=5.04077;AC=4;AF=0.5;AN=8;AO=71;CIGAR=1X;DP=154;DPB=154;DPRA=0;EPP=157.185;EPPR=183.243;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2837;QR=3327;RO=83;RPL=0;RPP=157.185;RPPR=183.243;RPR=71;RUN=1;SAF=71;SAP=157.185;SAR=0;SRF=83;SRP=183.243;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:49:20,29:20:796:29:1162:-90.1094,0,-57.2029 0/1:34:21,13:21:847:13:515:-36.4619,0,-66.3064 0/1:45:26,19:26:1044:19:763:-55.4456,0,-80.7068 0/1:26:16,10:16:640:10:397:-28.2611,0,-50.1061 dDocent_Contig_8985 155 . G A 1741.45 . AB=0.530435;ABP=3.93554;AC=3;AF=0.375;AN=8;AO=61;CIGAR=1X;DP=122;DPB=122;DPRA=5.47619;EPP=135.47;EPPR=135.47;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2370;QR=2396;RO=61;RPL=0;RPP=135.47;RPPR=135.47;RPR=61;RUN=1;SAF=0;SAP=135.47;SAR=61;SRF=0;SRP=135.47;SRR=61;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:52:27,25:27:1080:25:984:-73.1975,0,-81.8265 0/1:48:15,33:15:604:33:1292:-102.095,0,-40.2493 0/1:15:12,3:12:444:3:94:-4.24981,0,-35.7701 0/0:7:7,0:7:268:0:0:0,-2.10721,-24.4777 dDocent_Contig_8986 8 . A G 53.4004 . AB=0.121622;ABP=95.0338;AC=3;AF=0.375;AN=8;AO=11;CIGAR=1X;DP=140;DPB=140;DPRA=0;EPP=26.8965;EPPR=283.13;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.0909091;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=421;QR=4970;RO=129;RPL=0;RPP=26.8965;RPPR=283.13;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=129;SRP=283.13;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:27,3:27:1045:3:117:-1.87948,0,-85.327 0/0:66:64,2:64:2458:2:78:0,-12.4645,-214.022 0/1:34:29,5:29:1124:5:187:-6.9567,0,-91.2263 0/1:10:9,1:9:343:1:39:-0.886264,0,-28.217 dDocent_Contig_8988 7 . C A 162.737 . AB=0.25;ABP=22.5536;AC=2;AF=0.25;AN=8;AO=11;CIGAR=1X;DP=87;DPB=87;DPRA=1.11667;EPP=26.8965;EPPR=168.042;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=405;QR=2919;RO=76;RPL=0;RPP=26.8965;RPPR=168.042;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=76;SRP=168.042;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:16,4:16:611:4:148:-7.66137,0,-49.3066 0/0:31:29,2:29:1110:2:74:0,-2.30605,-93.1775 0/0:20:20,0:20:771:0:0:0,-6.0206,-69.7182 0/1:16:11,5:11:427:5:183:-12.0103,0,-33.9685 dDocent_Contig_8989 32 . A G 292.25 . AB=0.21875;ABP=46.9826;AC=2;AF=0.25;AN=8;AO=19;CIGAR=1X;DP=183;DPB=183;DPRA=0;EPP=44.2683;EPPR=359.132;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=769;QR=6574;RO=164;RPL=0;RPP=44.2683;RPPR=359.132;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=164;SRP=359.132;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:48:46,2:46:1835:2:79:0,-6.9522,-157.857 0/0:71:68,3:68:2717:3:122:0,-10.0006,-233.276 0/1:41:37,4:37:1500:4:163:-2.7162,0,-122.897 0/1:23:13,10:13:522:10:405:-29.8864,0,-40.4035 dDocent_Contig_8990 11 . C A 293.867 . AB=0.212121;ABP=50.5195;AC=1;AF=0.125;AN=8;AO=14;CIGAR=1X;DP=197;DPB=197;DPRA=1.51145;EPP=33.4109;EPPR=400.39;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=559;QR=7356;RO=183;RPL=0;RPP=33.4109;RPPR=400.39;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=183;SRP=400.39;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:66:52,14:52:2103:14:559:-30.7846,0,-169.571 0/0:89:89,0:89:3578:0:0:0,-26.7917,-322.044 0/0:31:31,0:31:1256:0:0:0,-9.33193,-113.307 0/0:11:11,0:11:419:0:0:0,-3.31133,-38.0493 dDocent_Contig_8991 91 . G A 142.5 . AB=0.285714;ABP=14.1779;AC=2;AF=0.25;AN=8;AO=10;CIGAR=1X;DP=88;DPB=88;DPRA=0.84;EPP=24.725;EPPR=172.385;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=351;QR=2714;RO=78;RPL=10;RPP=24.725;RPPR=172.385;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=78;SRP=172.385;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:25:25,0:25:862:0:0:0,-7.52575,-77.8965 0/0:35:33,2:33:1156:2:69:0,-3.98339,-97.7961 0/1:17:12,5:12:417:5:174:-10.8841,0,-32.7453 0/1:11:8,3:8:279:3:108:-6.76384,0,-22.1377 dDocent_Contig_8992 209 . N G 77.8076 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:82:-7.77968,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_8993 9 . T A 74.17 . AB=0.222222;ABP=15.074;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=48;DPB=48;DPRA=1.8;EPP=11.6962;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.818182;PAO=0;PQA=0;PQR=0;PRO=0;QA=154;QR=1701;RO=44;RPL=0;RPP=11.6962;RPPR=98.5551;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:14,4:14:542:4:154:-8.81492,0,-43.7075 0/0:13:13,0:13:498:0:0:0,-3.91339,-45.1675 0/0:6:6,0:6:232:0:0:0,-1.80618,-21.2489 0/0:11:11,0:11:429:0:0:0,-3.31133,-38.9656 dDocent_Contig_8994 13 . A T 1206.77 . AB=0.452632;ABP=4.86177;AC=4;AF=0.5;AN=8;AO=43;CIGAR=1X3M1I2M;DP=95;DPB=102.333;DPRA=0;EPP=96.3836;EPPR=113.755;GTI=0;LEN=1;MEANALT=1.25;MQM=59.7209;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1723;QR=2037;RO=51;RPL=0;RPP=96.3836;RPPR=113.755;RPR=43;RUN=1;SAF=43;SAP=96.3836;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:37:23,14:23:918:14:564:-39.9393,0,-71.7899 0|1:18:8,10:8:321:10:397:-30.671,0,-23.8397 0|1:19:2,16:2:80:16:642:-52.3346,0,-1.80018 0|1:21:18,3:18:718:3:120:-4.86627,0,-58.6245 dDocent_Contig_8995 9 . T C 166.572 . AB=0.0952381;ABP=32.8939;AC=3;AF=0.375;AN=8;AO=3;CIGAR=1X2M;DP=104;DPB=104;DPRA=0;EPP=9.52472;EPPR=196.271;GTI=0;LEN=1;MEANALT=2;MQM=51;MQMR=60;NS=4;NUMALT=2;ODDS=6.93889e-18;PAIRED=1;PAIREDR=0.988764;PAO=0;PQA=0;PQR=0;PRO=0;QA=116;QR=3493;RO=89;RPL=0;RPP=9.52472;RPPR=196.271;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=89;SRP=196.271;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:20:17,3,0:17:672:3,0:116,0:-4.69013,0,-54.7937,-9.80764,-55.6967,-65.12 0|0:56:53,2,1:53:2073:2,1:80,38:0,-9.43802,-179.287,-12.8604,-176.789,-182.993 0|1:21:15,4,2:15:593:4,2:160,78:-8.50006,0,-47.6034,-6.6479,-42.4383,-54.8467 0|1:7:4,3,0:4:155:3,0:119,0:-8.86471,0,-12.2178,-10.0688,-13.1209,-22.7998 dDocent_Contig_8997 14 . T C 527.094 . AB=0.233645;ABP=68.9459;AC=4;AF=0.5;AN=8;AO=25;CIGAR=1X;DP=107;DPB=107;DPRA=0;EPP=57.2971;EPPR=181.071;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=0.76;PAIREDR=0.841463;PAO=0;PQA=0;PQR=0;PRO=0;QA=1009;QR=3294;RO=82;RPL=0;RPP=57.2971;RPPR=181.071;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=82;SRP=181.071;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:20,7:20:800:7:285:-17.8966,0,-64.189 0/1:40:34,6:34:1370:6:239:-9.842,0,-111.514 0/1:29:19,10:19:765:10:403:-27.9,0,-60.4419 0/1:11:9,2:9:359:2:82:-4.46835,0,-29.3615 dDocent_Contig_8999 173 . C T 150.333 . AB=0.204545;ABP=36.372;AC=4;AF=0.5;AN=8;AO=9;CIGAR=1X;DP=44;DPB=44;DPRA=0;EPP=22.5536;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.914286;PAO=0;PQA=0;PQR=0;PRO=0;QA=365;QR=1375;RO=35;RPL=9;RPP=22.5536;RPPR=79.0118;RPR=0;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=79.0118;SRR=35;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:9,2:9:357:2:82:-4.46835,0,-29.1798 0/1:18:13,5:13:500:5:201:-13.052,0,-39.9139 0/1:4:3,1:3:116:1:41:-2.89045,0,-9.61139 0/1:11:10,1:10:402:1:41:-0.783237,0,-33.2282 dDocent_Contig_9001 20 . A T 337.994 . AB=0.393939;ABP=6.23461;AC=1;AF=0.125;AN=8;AO=14;CIGAR=1X;DP=133;DPB=133;DPRA=1.14516;EPP=33.4109;EPPR=261.416;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.991597;PAO=0;PQA=0;PQR=0;PRO=0;QA=541;QR=4612;RO=119;RPL=0;RPP=33.4109;RPPR=261.416;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=119;SRP=261.416;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:57:57,0:57:2202:0:0:0,-17.1587,-198.382 0/0:38:37,1:37:1437:1:40:0,-7.44346,-125.6 0/1:33:20,13:20:781:13:501:-35.4984,0,-60.6781 0/0:5:5,0:5:192:0:0:0,-1.50515,-17.6492 dDocent_Contig_9002 17 . T A 1221.95 . AB=0.012987;ABP=161.641;AC=0;AF=0;AN=8;AO=3;CIGAR=1X3M1X2M2X1M1X2M1D1M;DP=251;DPB=253.733;DPRA=0;EPP=3.73412;EPPR=341.814;GTI=0;LEN=1;MEANALT=4;MQM=58.3333;MQMR=60;NS=4;NUMALT=6;ODDS=0;PAIRED=0;PAIREDR=0.90625;PAO=0;PQA=0;PQR=0;PRO=0;QA=112;QR=6256;RO=160;RPL=0;RPP=9.52472;RPPR=350.446;RPR=3;RUN=1;SAF=2;SAP=3.73412;SAR=1;SRF=159;SRP=341.814;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:91:46,0,4,0,27,3,6:46:1813:0,4,0,27,3,6:0,140,0,1085,121,241:-75.5715,-89.4188,-238.579,-78.0322,-227.191,-225.986,-89.4188,-238.579,-227.191,-238.579,0,-149.168,-137.78,-149.168,-141.04,-79.444,-228.605,-217.216,-228.605,-139.193,-227.702,-69.5583,-218.719,-207.331,-218.719,-129.308,-208.745,-216.913 0|0:77:48,1,5,4,14,0,5:48:1876:1,5,4,14,0,5:39,164,116,566,0,202:-32.2425,-43.4863,-197.426,-33.451,-184.48,-186.18,-37.471,-188.497,-178.456,-190.498,0,-151.058,-141.017,-145.035,-150.049,-46.6919,-197.727,-187.685,-191.703,-154.263,-200.932,-30.0331,-181.073,-171.031,-175.049,-137.608,-184.278,-182.773 0|0:38:33,2,0,0,0,2,1:33:1281:2,0,0,0,2,1:73,0,0,0,76,41:0,-3.98343,-108.629,-9.93399,-109.231,-115.19,-9.93399,-109.231,-115.19,-115.19,-9.93399,-109.231,-115.19,-115.19,-115.19,-3.70213,-103,-108.959,-108.959,-108.959,-108.357,-6.54244,-105.846,-111.806,-111.806,-111.806,-105.574,-111.505 0|0:45:33,0,0,0,0,10,0:33:1286:0,0,0,0,10,0:0,0,0,0,364,0:-19.7791,-29.7131,-135.426,-29.7131,-135.426,-135.426,-29.7131,-135.426,-135.426,-135.426,-29.7131,-135.426,-135.426,-135.426,-135.426,0,-105.705,-105.705,-105.705,-105.705,-102.695,-29.7131,-135.426,-135.426,-135.426,-135.426,-105.705,-135.426 dDocent_Contig_9003 98 . N A 776.298 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=27;CIGAR=1X;DP=27;DPB=27;DPRA=0;EPP=61.6401;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=843;QR=0;RO=0;RPL=27;RPP=61.6401;RPPR=0;RPR=0;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:12:0,12:0:0:12:396:-35.9592,-3.61236,0 1/1:10:0,10:0:0:10:304:-27.6568,-3.0103,0 1/1:2:0,2:0:0:2:41:-3.89467,-0.60206,0 1/1:3:0,3:0:0:3:102:-9.51673,-0.90309,0 dDocent_Contig_9004 24 . T G 65.7937 . AB=0.190476;ABP=20.4855;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=124;DPB=124;DPRA=0.61165;EPP=11.6962;EPPR=263.587;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=158;QR=4838;RO=120;RPL=0;RPP=11.6962;RPPR=263.587;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=120;SRP=263.587;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:67:67,0:67:2693:0:0:0,-20.169,-242.482 0/0:12:12,0:12:489:0:0:0,-3.61236,-44.3613 0/0:24:24,0:24:964:0:0:0,-7.22472,-87.0609 0/1:21:17,4:17:692:4:158:-8.27834,0,-56.2866 dDocent_Contig_9005 31 . G A 48.7195 . AB=0.173913;ABP=24.253;AC=1;AF=0.125;AN=8;AO=17;CIGAR=1X;DP=492;DPB=492;DPRA=0;EPP=24.5973;EPPR=591.052;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=59.8312;NS=4;NUMALT=1;ODDS=0;PAIRED=0.647059;PAIREDR=0.553419;PAO=0;PQA=0;PQR=0;PRO=0;QA=659;QR=18239;RO=468;RPL=0;RPP=39.9253;RPPR=1019.26;RPR=17;RUN=1;SAF=15;SAP=24.5973;SAR=2;SRF=412;SRP=591.052;SRR=56;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:247:237,4:237:9204:4:157:0,-58.4269,-812.519 0/0:134:128,5:128:4978:5:201:0,-21.9664,-429.508 0/0:88:84,4:84:3304:4:155:0,-12.167,-281.658 0/1:23:19,4:19:753:4:146:-6.57091,0,-61.1697 dDocent_Contig_9006 12 . T C 546.395 . AB=0.258065;ABP=50.2924;AC=3;AF=0.375;AN=8;AO=24;CIGAR=1X;DP=121;DPB=121;DPRA=1.10714;EPP=55.1256;EPPR=213.643;GTI=0;LEN=1;MEANALT=1;MQM=57.125;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.948454;PAO=0;PQA=0;PQR=0;PRO=0;QA=967;QR=3879;RO=97;RPL=0;RPP=55.1256;RPPR=213.643;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=97;SRP=213.643;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:28:28,0:28:1113:0:0:0,-8.42884,-100.455 0/1:37:32,5:32:1279:5:199:-7.13163,0,-104.239 0/1:37:26,11:26:1045:11:448:-29.4874,0,-83.2015 0/1:19:11,8:11:442:8:320:-23.4184,0,-34.416 dDocent_Contig_9007 18 . G A 621.389 . AB=0.337838;ABP=19.9126;AC=2;AF=0.25;AN=8;AO=26;CIGAR=1X;DP=109;DPB=109;DPRA=2.46154;EPP=59.4686;EPPR=183.243;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1009;QR=3253;RO=83;RPL=0;RPP=59.4686;RPPR=183.243;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=83;SRP=183.243;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:34:14,20:14:550:20:767:-59.1076,0,-39.6028 0/1:40:35,5:35:1376:5:201:-6.42932,0,-112.059 0/0:22:21,1:21:819:1:41:0,-2.52809,-69.9303 0/0:13:13,0:13:508:0:0:0,-3.91339,-46.0624 dDocent_Contig_9008 46 . T C 363.256 . AB=0.211765;ABP=64.348;AC=2;AF=0.333333;AN=6;AO=20;CIGAR=1X;DP=134;DPB=134;DPRA=0;EPP=46.4397;EPPR=241.948;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=794;QR=4555;RO=114;RPL=0;RPP=46.4397;RPPR=241.948;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=114;SRP=250.558;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 0/0:49:47,2:47:1874:2:75:0,-7.63088,-161.745 0/1:31:19,12:19:758:12:476:-33.8561,0,-59.2095 0/1:54:48,6:48:1923:6:243:-5.99235,0,-157.012 dDocent_Contig_9009 25 . A T 33.5173 . AB=0.148148;ABP=32.0437;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X3M2X;DP=214;DPB=214;DPRA=0.433155;EPP=5.18177;EPPR=456.848;GTI=0;LEN=1;MEANALT=1;MQM=38;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=159;QR=8181;RO=209;RPL=0;RPP=11.6962;RPPR=456.848;RPR=4;RUN=1;SAF=3;SAP=5.18177;SAR=1;SRF=209;SRP=456.848;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:64:64,0:64:2486:0:0:0,-19.2659,-223.91 0|0:55:54,0:54:2122:0:0:0,-16.2556,-190.768 0|0:68:68,0:68:2662:0:0:0,-20.47,-239.739 0|1:27:23,4:23:911:4:159:-5.05051,0,-74.1734 dDocent_Contig_9010 82 . T C 85.1664 . AB=0.192308;ABP=24.391;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=95;DPB=95;DPRA=1.56757;EPP=16.0391;EPPR=196.271;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.977528;PAO=0;PQA=0;PQR=0;PRO=0;QA=231;QR=3424;RO=89;RPL=6;RPP=16.0391;RPPR=196.271;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=89;SRP=196.271;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:21,5:21:809:5:193:-9.91458,0,-65.3087 0/0:26:26,0:26:1003:0:0:0,-7.82678,-90.5797 0/0:32:31,1:31:1192:1:38:0,-5.83569,-103.776 0/0:11:11,0:11:420:0:0:0,-3.31133,-38.1524 dDocent_Contig_9011 107 . N G 131.23 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=135;QR=0;RO=0;RPL=0;RPP=11.6962;RPPR=0;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:66:-6.26818,-0.60206,0 ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:69:-6.55266,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_9012 21 . A G 208.906 . AB=0.230769;ABP=11.1951;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X2M1X;DP=96;DPB=96;DPRA=0.666667;EPP=16.0391;EPPR=181.071;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=213;QR=3216;RO=82;RPL=0;RPP=16.0391;RPPR=181.071;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=82;SRP=181.071;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:32:32,0,0:32:1257:0,0:0,0:0,-9.63296,-113.41,-9.63296,-113.41,-113.41 0|0:28:26,1,1:26:1023:1,1:39,41:0,-4.6308,-88.4619,-4.4328,-85.3782,-88.2829 0|0:23:21,2,0:21:821:2,0:56,0:0,-1.60697,-68.8929,-6.32163,-69.495,-73.9202 1|0:13:3,3,7:3:115:3,7:118,281:-22.536,-13.7346,-22.2633,-0.279674,0,-7.60462 dDocent_Contig_9013 43 . C G 1403.76 . AB=0.28934;ABP=78.9457;AC=4;AF=0.5;AN=8;AO=57;CIGAR=1X;DP=197;DPB=197;DPRA=0;EPP=126.784;EPPR=283.384;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.964912;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2280;QR=5398;RO=137;RPL=0;RPP=126.784;RPPR=283.384;RPR=57;RUN=1;SAF=57;SAP=126.784;SAR=0;SRF=137;SRP=300.502;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:62:46,13:46:1817:13:514:-28.4583,0,-145.6 0/1:42:29,13:29:1138:13:514:-33.9616,0,-90.0651 0/1:50:32,18:32:1258:18:732:-51.1521,0,-98.4455 0/1:43:30,13:30:1185:13:520:-34.2019,0,-93.9867 dDocent_Contig_9014 69 . T C 39.9214 . AB=0.285714;ABP=5.80219;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X;DP=60;DPB=60;DPRA=0.396226;EPP=7.35324;EPPR=128.956;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.931034;PAO=0;PQA=0;PQR=0;PRO=0;QA=79;QR=2293;RO=58;RPL=2;RPP=7.35324;RPPR=128.956;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:7:5,2:5:200:2:79:-5.39003,0,-16.2723 0/0:32:32,0:32:1271:0:0:0,-9.63296,-114.655 0/0:10:10,0:10:394:0:0:0,-3.0103,-35.8154 0/0:11:11,0:11:428:0:0:0,-3.31133,-38.8633 dDocent_Contig_9016 9 . T A 65.9149 . AB=0.117647;ABP=110.945;AC=2;AF=0.25;AN=8;AO=10;CIGAR=1X;DP=169;DPB=169;DPRA=1.0119;EPP=24.725;EPPR=348.274;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=387;QR=6055;RO=159;RPL=0;RPP=24.725;RPPR=348.274;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=159;SRP=348.274;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:77:77,0:77:2923:0:0:0,-23.1793,-263.24 0/1:38:33,5:33:1255:5:194:-6.3937,0,-101.802 0/1:47:42,5:42:1608:5:193:-3.59295,0,-130.839 0/0:7:7,0:7:269:0:0:0,-2.10721,-24.5742 dDocent_Contig_9017 50 . C T 45.7557 . AB=0.4;ABP=3.44459;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X;DP=70;DPB=70;DPRA=0.230769;EPP=7.35324;EPPR=142.112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.970588;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=2671;RO=68;RPL=2;RPP=7.35324;RPPR=150.67;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=67;SRP=142.112;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:23:23,0:23:893:0:0:0,-6.92369,-80.6784 0/0:31:31,0:31:1225:0:0:0,-9.33193,-110.527 0/0:11:11,0:11:437:0:0:0,-3.31133,-39.6821 0/1:5:3,2:3:116:2:82:-6.27453,0,-9.31187 dDocent_Contig_9018 13 . C A 65.6186 . AB=0.3;ABP=6.48466;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=27;DPB=27;DPRA=1.17647;EPP=9.52472;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=119;QR=938;RO=24;RPL=0;RPP=9.52472;RPPR=55.1256;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:7,3:7:275:3:119:-8.08471,0,-22.1077 0/0:6:6,0:6:238:0:0:0,-1.80618,-21.7942 0/0:11:11,0:11:425:0:0:0,-3.31133,-38.6 ./.:.:.:.:.:.:.:. dDocent_Contig_9019 89 . C T 90.8213 . AB=0.169811;ABP=53.2;AC=2;AF=0.25;AN=8;AO=10;CIGAR=1X;DP=122;DPB=122;DPRA=0.709402;EPP=24.725;EPPR=246.215;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=329;QR=3848;RO=112;RPL=10;RPP=24.725;RPPR=246.215;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=112;SRP=246.215;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:44:36,8:36:1230:8:260:-10.4734,0,-97.7566 0/0:39:39,0:39:1337:0:0:0,-11.7402,-120.63 0/0:30:29,1:29:1004:1:34:0,-5.63199,-87.2738 0/1:9:8,1:8:277:1:35:-0.789359,0,-22.5577 dDocent_Contig_9020 13 . A G 2142.97 . AB=0.434524;ABP=9.26621;AC=4;AF=0.5;AN=8;AO=73;CIGAR=1X3M;DP=168;DPB=168;DPRA=0;EPP=161.528;EPPR=148.499;GTI=0;LEN=1;MEANALT=2.25;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2934;QR=2583;RO=67;RPL=0;RPP=161.528;RPPR=148.499;RPR=73;RUN=1;SAF=73;SAP=161.528;SAR=0;SRF=67;SRP=148.499;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:84:32,16,35:32:1224:16,35:614,1409:-106.502,-65.7414,-161.349,0,-50.0333,-89.8972 0|1:52:25,6,21:25:975:6,21:229,855:-63.0256,-51.7707,-130.096,0,-61.3632,-73.8263 0|1:20:8,3,9:8:304:3,9:118,356:-26.8886,-19.5906,-43.6104,0,-15.21,-22.2112 0|1:12:2,2,8:2:80:2,8:77,314:-25.2247,-19.5068,-25.4962,0,-0.283375,-4.18918 dDocent_Contig_9021 12 . C A 78.3386 . AB=0.119403;ABP=87.3088;AC=2;AF=0.25;AN=8;AO=8;CIGAR=1X;DP=186;DPB=186;DPRA=0.563025;EPP=20.3821;EPPR=389.532;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.983146;PAO=0;PQA=0;PQR=0;PRO=0;QA=324;QR=7094;RO=178;RPL=0;RPP=20.3821;RPPR=389.532;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=178;SRP=389.532;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:49:49,0:49:1956:0:0:0,-14.7505,-176.237 0/0:70:70,0:70:2803:0:0:0,-21.0721,-252.376 0/1:37:34,3:34:1338:3:122:-0.234383,0,-109.545 0/1:30:25,5:25:997:5:202:-9.53097,0,-80.9964 dDocent_Contig_9022 12 . A T 503.238 . AB=0.271739;ABP=44.6459;AC=2;AF=0.25;AN=8;AO=25;CIGAR=1X;DP=180;DPB=180;DPRA=1.04545;EPP=57.2971;EPPR=339.589;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=897;QR=6013;RO=155;RPL=0;RPP=57.2971;RPPR=339.589;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=155;SRP=339.589;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:56:56,0:56:2186:0:0:0,-16.8577,-196.931 0/1:85:62,23:62:2391:23:822:-48.7085,0,-189.763 0/0:32:32,0:32:1261:0:0:0,-9.63296,-113.769 0/1:7:5,2:5:175:2:75:-5.01313,0,-13.9781 dDocent_Contig_9023 152 . G A 83.7519 . AB=0.5;ABP=3.0103;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=44;DPB=44;DPRA=0.666667;EPP=11.6962;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=135;QR=1498;RO=40;RPL=0;RPP=11.6962;RPPR=89.8692;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=89.8692;SRR=40;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:12:12,0:12:446:0:0:0,-3.61236,-40.4782 0/0:18:18,0:18:672:0:0:0,-5.41854,-60.8051 0/1:8:4,4:4:158:4:135:-10.0741,0,-12.1924 0/0:6:6,0:6:222:0:0:0,-1.80618,-20.3339 dDocent_Contig_9024 11 . C T 1883.96 . AB=0.609524;ABP=13.9504;AC=4;AF=0.5;AN=8;AO=64;CIGAR=1X;DP=105;DPB=105;DPRA=0;EPP=141.985;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2512;QR=1607;RO=41;RPL=0;RPP=141.985;RPPR=92.0407;RPR=64;RUN=1;SAF=64;SAP=141.985;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:42:11,31:11:438:31:1222:-97.6216,0,-27.129 0/1:40:13,27:13:526:27:1063:-83.9276,0,-35.6452 0/1:9:6,3:6:228:3:121:-8.57093,0,-18.1687 0/1:14:11,3:11:415:3:106:-5.67411,0,-33.4712 dDocent_Contig_9025 7 . C T 248.641 . AB=0.5;ABP=3.0103;AC=1;AF=0.125;AN=8;AO=11;CIGAR=1X;DP=90;DPB=90;DPRA=2.46154;EPP=26.8965;EPPR=174.557;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=426;QR=3043;RO=79;RPL=0;RPP=26.8965;RPPR=174.557;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=79;SRP=174.557;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:9,9:9:350:9:348:-26.2617,0,-26.4428 0/0:46:44,2:44:1697:2:78:0,-6.44391,-145.583 0/0:24:24,0:24:918:0:0:0,-7.22472,-82.9364 0/0:2:2,0:2:78:0:0:0,-0.60206,-7.40347 dDocent_Contig_9026 33 . T G 2149.45 . AB=0.572519;ABP=8.99428;AC=4;AF=0.5;AN=8;AO=75;CIGAR=1X;DP=131;DPB=131;DPRA=0;EPP=165.871;EPPR=120.27;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.986667;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2892;QR=2123;RO=54;RPL=0;RPP=165.871;RPPR=120.27;RPR=75;RUN=1;SAF=75;SAP=165.871;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:42:21,19:21:828:19:737:-54.217,0,-62.3959 0/1:45:21,24:21:814:24:908:-68.4715,0,-60.0225 0/1:35:10,25:10:400:25:975:-77.5167,0,-25.8238 0/1:9:2,7:2:81:7:272:-22.1378,0,-4.97646 dDocent_Contig_9027 40 . C T 37.4211 . AB=0.1875;ABP=16.582;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=134;DPB=134;DPRA=0.488889;EPP=13.8677;EPPR=283.13;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=192;QR=5143;RO=129;RPL=0;RPP=13.8677;RPPR=283.13;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=129;SRP=283.13;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:47:47,0:47:1869:0:0:0,-14.1484,-168.413 0/0:43:43,0:43:1728:0:0:0,-12.9443,-155.741 0/0:28:26,2:26:1022:2:82:0,-0.649162,-84.4989 0/1:16:13,3:13:524:3:110:-5.44076,0,-42.6914 dDocent_Contig_9028 108 . A T 65.7694 . AB=0.171429;ABP=35.8306;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=89;DPB=89;DPRA=1.94444;EPP=16.0391;EPPR=183.243;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=202;QR=2677;RO=83;RPL=0;RPP=16.0391;RPPR=183.243;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=183.243;SRR=83;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:35:29,6:29:917:6:202:-7.97485,0,-72.2865 0/0:38:38,0:38:1254:0:0:0,-11.4391,-113.154 0/0:5:5,0:5:159:0:0:0,-1.50515,-14.6247 0/0:11:11,0:11:347:0:0:0,-3.31133,-31.5353 dDocent_Contig_9029 7 . C A 143.379 . AB=0;ABP=0;AC=3;AF=0.375;AN=8;AO=3;CIGAR=1M1X1M2I3M2X4M9I2M;DP=138;DPB=149.071;DPRA=0;EPP=9.52472;EPPR=226.672;GTI=0;LEN=1;MEANALT=5;MQM=39;MQMR=60;NS=4;NUMALT=2;ODDS=1.38778e-17;PAIRED=0;PAIREDR=0.990291;PAO=0;PQA=0;PQR=0;PRO=0;QA=108;QR=4012;RO=103;RPL=0;RPP=9.52472;RPPR=226.672;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=103;SRP=226.672;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:48:41,0,3:41:1611:0,3:0,108:0,-12.3422,-144.924,-4.02738,-136.638,-135.735 0|1:54:37,9,0:37:1448:9,0:297,0:-10.5219,0,-116.544,-21.66,-119.253,-140.828 0|1:23:17,4,0:17:654:4,0:127,0:-4.04716,0,-52.6037,-9.16467,-53.8078,-62.9364 0|1:13:8,4,0:8:299:4,0:109,0:-5.16577,0,-23.4476,-7.57401,-24.6518,-32.1422 dDocent_Contig_9030 28 . A G 2145.28 . AB=0.581395;ABP=10.4337;AC=4;AF=0.5;AN=8;AO=75;CIGAR=1X;DP=129;DPB=129;DPRA=0;EPP=165.871;EPPR=120.27;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2883;QR=2130;RO=54;RPL=0;RPP=165.871;RPPR=120.27;RPR=75;RUN=1;SAF=75;SAP=165.871;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:35:15,20:15:569:20:769:-58.9916,0,-41.0029 0/1:36:28,8:28:1123:8:314:-17.786,0,-90.5201 0/1:37:8,29:8:318:29:1080:-86.3416,0,-17.8467 0/1:21:3,18:3:120:18:720:-58.8065,0,-4.86627 dDocent_Contig_9031 60 . T A 50.9933 . AB=0.16;ABP=28.1125;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=83;DPB=83;DPRA=1.2931;EPP=11.6962;EPPR=174.557;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=155;QR=3066;RO=79;RPL=4;RPP=11.6962;RPPR=174.557;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=79;SRP=174.557;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:40:40,0:40:1558:0:0:0,-12.0412,-140.474 0/1:25:21,4:21:803:4:155:-6.79828,0,-65.0617 0/0:6:6,0:6:239:0:0:0,-1.80618,-21.8843 0/0:12:12,0:12:466:0:0:0,-3.61236,-42.2882 dDocent_Contig_9032 80 . G A 80.6988 . AB=0.307692;ABP=7.18621;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=55;DPB=55;DPRA=0.928571;EPP=11.6962;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=148;QR=1710;RO=51;RPL=4;RPP=11.6962;RPPR=113.755;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:21:21,0:21:684:0:0:0,-6.32163,-61.8649 0/1:13:9,4:9:303:4:148:-9.76858,0,-23.6842 0/0:19:19,0:19:653:0:0:0,-5.71957,-59.0925 0/0:2:2,0:2:70:0:0:0,-0.60206,-6.6474 dDocent_Contig_9033 15 . G A 877.624 . AB=0.43662;ABP=5.48761;AC=2;AF=0.25;AN=8;AO=31;CIGAR=1X;DP=114;DPB=114;DPRA=1.65116;EPP=70.3259;EPPR=183.243;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1243;QR=3333;RO=83;RPL=0;RPP=70.3259;RPPR=183.243;RPR=31;RUN=1;SAF=31;SAP=70.3259;SAR=0;SRF=83;SRP=183.243;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:46:19,27:19:771:27:1084:-83.9953,0,-55.8624 0/0:32:32,0:32:1280:0:0:0,-9.63296,-115.464 0/1:25:21,4:21:841:4:159:-7.16508,0,-68.4772 0/0:11:11,0:11:441:0:0:0,-3.31133,-40.0443 dDocent_Contig_9034 47 . C T 45.7558 . AB=0.4;ABP=3.44459;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X;DP=38;DPB=38;DPRA=0.454545;EPP=7.35324;EPPR=72.7387;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.972222;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=1440;RO=36;RPL=0;RPP=7.35324;RPPR=72.7387;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:9:9,0:9:351:0:0:0,-2.70927,-31.9468 0/0:16:16,0:16:646:0:0:0,-4.81648,-58.4739 0/1:5:3,2:3:120:2:82:-6.27453,0,-9.68254 0/0:8:8,0:8:323:0:0:0,-2.40824,-29.4386 dDocent_Contig_9035 20 . A G 358.399 . AB=0.204301;ABP=73.6415;AC=4;AF=0.5;AN=8;AO=19;CIGAR=1X;DP=93;DPB=93;DPRA=0;EPP=44.2683;EPPR=163.699;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=774;QR=2938;RO=74;RPL=0;RPP=44.2683;RPPR=163.699;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=74;SRP=163.699;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:41:36,5:36:1441:5:202:-6.21926,0,-117.599 0/1:37:29,8:29:1140:8:327:-18.662,0,-91.7435 0/1:10:8,2:8:317:2:82:-4.76938,0,-25.8846 0/1:5:1,4:1:40:4:163:-13.5533,0,-2.49053 dDocent_Contig_9037 16 . T A 19893.4 . AB=0.0298945;ABP=3277.8;AC=0;AF=0;AN=8;AO=51;CIGAR=5M2X3M;DP=1706;DPB=1645;DPRA=0;EPP=113.755;EPPR=980.173;GTI=0;LEN=1;MEANALT=22;MQM=59.1569;MQMR=59.5822;NS=4;NUMALT=3;ODDS=0;PAIRED=0.901961;PAIREDR=0.982222;PAO=0;PQA=0;PQR=0;PRO=0;QA=2020;QR=17869;RO=450;RPL=0;RPP=113.755;RPPR=980.173;RPR=51;RUN=1;SAF=51;SAP=113.755;SAR=0;SRF=450;SRP=980.173;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:484:128,197,66,6:128:5068:197,66,6:7543,2631,229:-568.371,0,-357.797,-395.77,-205.97,-793.002,-588.316,-398.514,-794.284,-1003.61 0|0:446:123,164,50,5:123:4887:164,50,5:6244,1754,200:-463.122,0,-350.26,-363.352,-262.835,-747.922,-483.674,-383.154,-746.499,-881.792 0|0:551:160,238,44,25:160:6364:238,44,25:9098,1721,987:-683.343,0,-452.334,-593.495,-385.969,-1104.23,-650.303,-442.775,-1036.27,-1166.75 0|0:225:39,92,26,15:39:1550:92,26,15:3605,1035,604:-281.901,0,-99.5201,-211.13,-44.7041,-330.516,-243.858,-77.4313,-288.56,-366.555 dDocent_Contig_9038 104 . N C 62.694 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=4X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=66;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. 1|1:2:0,2:0:0:2:66:-6.26831,-0.60206,0 .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. dDocent_Contig_9039 32 . G C 211.503 . 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AB=0.212121;ABP=26.7649;AC=2;AF=0.25;AN=8;AO=7;CIGAR=1X;DP=44;DPB=44;DPRA=3;EPP=18.2106;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=250;QR=1334;RO=37;RPL=7;RPP=18.2106;RPPR=83.3548;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:9,5:9:324:5:178:-12.1542,0,-25.2904 0/1:19:17,2:17:616:2:72:-1.11715,0,-50.0538 0/0:3:3,0:3:111:0:0:0,-0.90309,-10.3539 0/0:8:8,0:8:283:0:0:0,-2.40824,-25.8105 dDocent_Contig_9052 10 . C T 2102.66 . AB=0.334711;ABP=60.4377;AC=4;AF=0.5;AN=8;AO=81;CIGAR=1X;DP=242;DPB=242;DPRA=0;EPP=178.9;EPPR=350.446;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3212;QR=6420;RO=160;RPL=0;RPP=178.9;RPPR=350.446;RPR=81;RUN=1;SAF=81;SAP=178.9;SAR=0;SRF=160;SRP=350.446;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:75:67,7:67:2680:7:284:-3.51087,0,-218.929 0/1:72:28,44:28:1116:44:1742:-135.331,0,-79.0526 0/1:52:37,15:37:1500:15:597:-38.4139,0,-119.586 0/1:43:28,15:28:1124:15:589:-40.4046,0,-88.4962 dDocent_Contig_9053 67 . G T 282.975 . AB=0.270833;ABP=24.906;AC=1;AF=0.125;AN=8;AO=13;CIGAR=2X;DP=104;DPB=104;DPRA=2.57143;EPP=31.2394;EPPR=200.614;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=490;QR=3256;RO=91;RPL=13;RPP=31.2394;RPPR=200.614;RPR=0;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=91;SRP=200.614;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:16:16,0:16:557:0:0:0,-4.81648,-50.4533 0|1:48:35,13:35:1271:13:490:-29.9965,0,-100.234 0|0:31:31,0:31:1106:0:0:0,-9.33193,-99.8415 0|0:9:9,0:9:322:0:0:0,-2.70927,-29.3199 dDocent_Contig_9054 42 . A G 1103.87 . AB=0.401961;ABP=11.5259;AC=4;AF=0.5;AN=8;AO=41;CIGAR=1X;DP=102;DPB=102;DPRA=0;EPP=92.0407;EPPR=135.47;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1634;QR=2458;RO=61;RPL=0;RPP=92.0407;RPPR=135.47;RPR=41;RUN=1;SAF=41;SAP=92.0407;SAR=0;SRF=61;SRP=135.47;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:38:17,21:17:680:21:836:-64.109,0,-50.0898 0/1:37:22,15:22:883:15:597:-42.929,0,-68.6395 0/1:18:15,3:15:610:3:119:-5.67647,0,-49.8193 0/1:9:7,2:7:285:2:82:-5.07041,0,-23.3151 dDocent_Contig_9055 13 . T C 145.729 . AB=0.191489;ABP=41.8658;AC=3;AF=0.375;AN=8;AO=9;CIGAR=1X;DP=52;DPB=52;DPRA=3.13333;EPP=22.5536;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.777778;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=356;QR=1742;RO=43;RPL=0;RPP=22.5536;RPPR=96.3836;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:9,1:9:363:1:41:-1.08427,0,-30.0229 0/1:18:15,3:15:607:3:111:-4.9332,0,-49.5492 0/1:19:14,5:14:571:5:204:-13.0245,0,-46.0121 0/0:5:5,0:5:201:0:0:0,-1.50515,-18.4705 dDocent_Contig_9056 11 . A T 1643.86 . AB=0.250883;ABP=155.558;AC=4;AF=0.5;AN=8;AO=71;CIGAR=1X;DP=283;DPB=283;DPRA=0;EPP=157.185;EPPR=461.191;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.957746;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2842;QR=8426;RO=211;RPL=0;RPP=157.185;RPPR=461.191;RPR=71;RUN=1;SAF=71;SAP=157.185;SAR=0;SRF=211;SRP=461.191;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:82:70,12:70:2790:12:483:-19.1363,0,-226.534 0/1:108:65,42:65:2595:42:1676:-118.444,0,-201.059 0/1:75:61,14:61:2436:14:563:-28.4347,0,-196.812 0/1:18:15,3:15:605:3:120:-5.76915,0,-49.3699 dDocent_Contig_9057 107 . N G 311.109 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=10;CIGAR=1X;DP=10;DPB=10;DPRA=0;EPP=24.725;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=11.5366;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=342;QR=0;RO=0;RPL=0;RPP=24.725;RPPR=0;RPR=10;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:10:0,10:0:0:10:342:-31.1109,-3.0103,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_9058 9 . T C 817.061 . AB=0.333333;ABP=4.45795;AC=1;AF=0.125;AN=8;AO=2;CIGAR=4X2M3X2M1X2M1X3M1X;DP=114;DPB=114;DPRA=0.214286;EPP=7.35324;EPPR=168.042;GTI=0;LEN=1;MEANALT=1;MQM=12;MQMR=59.8816;NS=4;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0.947368;PAO=0;PQA=0;PQR=0;PRO=0;QA=74;QR=2956;RO=76;RPL=0;RPP=7.35324;RPPR=168.042;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=76;SRP=168.042;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:28:27,0,0:27:1053:0,0:0,0:0,-8.12781,-94.9821,-8.12781,-94.9821,-94.9821 0|0:24:16,0,8:16:629:0,8:0,297:-19.8588,-24.6753,-76.403,0,-52.1059,-49.6976 0|0:56:29,0,25:29:1115:0,25:0,905:-65.2419,-73.9718,-165.519,0,-91.6523,-84.1265 0|1:6:4,2,0:4:159:2,0:74,0:-0.471117,0,-12.8862,-1.67524,-13.4882,-14.9512 dDocent_Contig_9059 24 . C A 649.525 . AB=0.224638;ABP=93.8974;AC=4;AF=0.5;AN=8;AO=31;CIGAR=1X;DP=138;DPB=138;DPRA=0;EPP=70.3259;EPPR=235.358;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1233;QR=4282;RO=107;RPL=0;RPP=70.3259;RPPR=235.358;RPR=31;RUN=1;SAF=31;SAP=70.3259;SAR=0;SRF=107;SRP=235.358;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:41:24,17:24:962:17:662:-47.5625,0,-74.5376 0/1:48:44,4:44:1761:4:163:-0.608988,0,-144.25 0/1:31:23,8:23:912:8:326:-20.3779,0,-73.0546 0/1:18:16,2:16:647:2:82:-2.36114,0,-53.1445 dDocent_Contig_9060 45 . G T 90.4615 . AB=0.285714;ABP=8.59409;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=30;DPB=30;DPRA=1.75;EPP=11.6962;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=160;QR=1033;RO=26;RPL=0;RPP=11.6962;RPPR=59.4686;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:10,4:10:399:4:160:-10.569,0,-32.0515 0/0:10:10,0:10:396:0:0:0,-3.0103,-35.9967 0/0:6:6,0:6:238:0:0:0,-1.80618,-21.7938 ./.:.:.:.:.:.:.:. dDocent_Contig_9061 10 . A C 2355.8 . AB=0.605634;ABP=9.89173;AC=5;AF=0.625;AN=8;AO=72;CIGAR=1X;DP=101;DPB=101;DPRA=0;EPP=159.356;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2898;QR=1120;RO=28;RPL=0;RPP=159.356;RPPR=63.8115;RPR=72;RUN=1;SAF=72;SAP=159.356;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:32:11,21:11:445:21:840:-66.2769,0,-30.7731 1/1:30:0,29:0:0:29:1173:-105.434,-8.72987,0 0/1:30:9,21:9:354:21:844:-67.2416,0,-23.1903 0/1:9:8,1:8:321:1:41:-1.3853,0,-26.5488 dDocent_Contig_9062 142 . G T 160.28 . AB=0.428571;ABP=3.63072;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=50;DPB=50;DPRA=0.777778;EPP=16.0391;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=241;QR=1767;RO=44;RPL=0;RPP=16.0391;RPPR=98.5551;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=98.5551;SRR=44;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:26:26,0:26:1042:0:0:0,-7.82678,-94.0722 0/1:14:8,6:8:328:6:241:-17.8519,0,-25.6759 0/0:10:10,0:10:397:0:0:0,-3.0103,-36.0859 ./.:.:.:.:.:.:.:. dDocent_Contig_9063 25 . G A 265.295 . AB=0.244898;ABP=30.7077;AC=2;AF=0.25;AN=8;AO=12;CIGAR=1X;DP=104;DPB=104;DPRA=0.890909;EPP=29.068;EPPR=202.786;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=477;QR=3640;RO=92;RPL=0;RPP=29.068;RPPR=202.786;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=92;SRP=202.786;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:8,9:8:320:9:363:-27.9168,0,-24.0497 0/0:32:32,0:32:1289:0:0:0,-9.63296,-116.276 0/1:32:29,3:29:1109:3:114:-0.997747,0,-90.4635 0/0:23:23,0:23:922:0:0:0,-6.92369,-83.283 dDocent_Contig_9064 98 . N A 457.716 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=15;CIGAR=1X;DP=15;DPB=15;DPRA=0;EPP=35.5824;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=15.0024;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=505;QR=0;RO=0;RPL=15;RPP=35.5824;RPPR=0;RPR=0;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:15:0,15:0:0:15:505:-45.7715,-4.51545,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_9065 27 . G A 229.484 . AB=0.24;ABP=32.3686;AC=4;AF=0.5;AN=8;AO=12;CIGAR=1X;DP=50;DPB=50;DPRA=0;EPP=29.068;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=0.583333;PAIREDR=0.789474;PAO=0;PQA=0;PQR=0;PRO=0;QA=483;QR=1492;RO=38;RPL=0;RPP=29.068;RPPR=85.5263;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:8:7,1:7:284:1:41:-1.68633,0,-23.5255 0/1:7:2,5:2:79:5:200:-16.2727,0,-5.39003 0/1:19:16,3:16:627:3:120:-5.46774,0,-51.0426 0/1:16:13,3:13:502:3:122:-6.55601,0,-40.6993 dDocent_Contig_9066 39 . G A 59.6888 . AB=0.230769;ABP=11.1951;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=77;DPB=77;DPRA=0.609375;EPP=9.52472;EPPR=163.699;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=121;QR=2885;RO=74;RPL=0;RPP=9.52472;RPPR=163.699;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=74;SRP=163.699;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:10,3:10:380:3:121:-7.36681,0,-30.6383 0/0:38:38,0:38:1498:0:0:0,-11.4391,-135.078 0/0:19:19,0:19:737:0:0:0,-5.71957,-66.6543 0/0:7:7,0:7:270:0:0:0,-2.10721,-24.6641 dDocent_Contig_9070 8 . A G 782.105 . AB=0.360465;ABP=17.5541;AC=3;AF=0.375;AN=8;AO=31;CIGAR=1X4M;DP=89;DPB=89;DPRA=9.55556;EPP=70.3259;EPPR=118.098;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1195;QR=2055;RO=53;RPL=0;RPP=70.3259;RPPR=118.098;RPR=31;RUN=1;SAF=31;SAP=70.3259;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:51:23,4,24:23:894:4,24:158,928:-69.294,-63.2146,-135.473,0,-60.4537,-66.2318 0|1:23:18,0,4:18:710:0,4:0,156:-7.57304,-12.9916,-71.4469,0,-58.6222,-57.418 0|1:12:9,0,3:9:341:0,3:0,111:-6.74113,-9.4504,-37.4121,0,-28.3337,-27.4306 0|0:3:3,0,0:3:110:0,0:0,0:0,-0.90309,-10.2598,-0.90309,-10.2598,-10.2598 dDocent_Contig_9072 20 . C A 2958.29 . AB=0.542553;ABP=5.9672;AC=4;AF=0.5;AN=8;AO=102;CIGAR=1X;DP=188;DPB=188;DPRA=0;EPP=224.5;EPPR=181.172;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.95098;PAIREDR=0.94186;PAO=0;PQA=0;PQR=0;PRO=0;QA=3985;QR=3466;RO=86;RPL=0;RPP=224.5;RPPR=189.757;RPR=102;RUN=1;SAF=102;SAP=224.5;SAR=0;SRF=85;SRP=181.172;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:37:19,18:19:772:18:718:-53.8086,0,-58.6607 0/1:36:9,27:9:361:27:1065:-85.3034,0,-22.0168 0/1:59:33,26:33:1334:26:1025:-74.7758,0,-102.558 0/1:56:25,31:25:999:31:1177:-89.3387,0,-73.3487 dDocent_Contig_9073 12 . G A 66.6726 . AB=0.152174;ABP=51.3492;AC=3;AF=0.375;AN=8;AO=7;CIGAR=1X;DP=58;DPB=58;DPRA=1.27778;EPP=18.2106;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.714286;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=275;QR=2045;RO=51;RPL=0;RPP=18.2106;RPPR=113.755;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:12:12,0:12:487:0:0:0,-3.61236,-44.1817 0/1:20:17,3:17:678:3:113:-4.51632,0,-55.3302 0/1:12:10,2:10:405:2:80:-3.97922,0,-33.1977 0/1:14:12,2:12:475:2:82:-3.56526,0,-38.8826 dDocent_Contig_9075 39 . G T 103.682 . AB=0.4;ABP=3.87889;AC=1;AF=0.125;AN=8;AO=4;CIGAR=3X1M1X;DP=140;DPB=140;DPRA=0.230769;EPP=11.6962;EPPR=285.302;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=59.6923;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.653846;PAO=0;PQA=0;PQR=0;PRO=0;QA=161;QR=5112;RO=130;RPL=0;RPP=11.6962;RPPR=285.302;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=130;SRP=285.302;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:10:5,4:5:188:4:161:-11.7662,0,-14.1766 0|0:83:79,0:79:3138:0:0:0,-23.7814,-282.235 0|0:24:23,0:23:900:0:0:0,-6.92369,-80.8674 0|0:23:23,0:23:886:0:0:0,-6.92369,-80.0202 dDocent_Contig_9076 139 . G A 53.8809 . AB=0.181818;ABP=22.3561;AC=2;AF=0.25;AN=8;AO=5;CIGAR=1X;DP=57;DPB=57;DPRA=0.571429;EPP=13.8677;EPPR=31.2394;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.75;PAO=0;PQA=0;PQR=0;PRO=0;QA=198;QR=1982;RO=52;RPL=0;RPP=13.8677;RPPR=115.927;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=13;SRP=31.2394;SRR=39;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:21:21,0:21:813:0:0:0,-6.32163,-73.4791 0/0:14:13,1:13:499:1:40:0,-0.218741,-41.2534 0/1:14:11,3:11:394:3:121:-7.06578,0,-31.5744 0/1:8:7,1:7:276:1:37:-1.28959,0,-22.7979 dDocent_Contig_9077 193 . A T 768.37 . AB=0.75;ABP=20.3821;AC=1;AF=0.125;AN=8;AO=24;CIGAR=1X;DP=55;DPB=55;DPRA=4.17391;EPP=55.1256;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=973;QR=1242;RO=31;RPL=24;RPP=55.1256;RPPR=70.3259;RPR=0;RUN=1;SAF=0;SAP=55.1256;SAR=24;SRF=0;SRP=70.3259;SRR=31;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:32:8,24:8:317:24:973:-78.2348,0,-19.2608 0/0:3:3,0:3:122:0:0:0,-0.90309,-11.3725 0/0:10:10,0:10:403:0:0:0,-3.0103,-36.6301 0/0:10:10,0:10:400:0:0:0,-3.0103,-36.3559 dDocent_Contig_9079 191 . A G 52.6424 . AB=0.136364;ABP=53.5464;AC=4;AF=0.5;AN=8;AO=6;CIGAR=1X;DP=44;DPB=44;DPRA=0;EPP=16.0391;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=245;QR=1496;RO=38;RPL=6;RPP=16.0391;RPPR=85.5263;RPR=0;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=85.5263;SRR=38;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:12,2:12:477:2:82:-3.56526,0,-39.0642 0/1:9:8,1:8:316:1:40:-1.28641,0,-26.0949 0/1:9:7,2:7:269:2:82:-5.07041,0,-21.8612 0/1:12:11,1:11:434:1:41:-0.482207,0,-35.801 dDocent_Contig_9080 29 . C A 219.293 . AB=0.4;ABP=4.74748;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=59;DPB=59;DPRA=1.53846;EPP=20.3821;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=322;QR=2031;RO=51;RPL=0;RPP=20.3821;RPPR=113.755;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:12,8:12:490:8:322:-23.3272,0,-38.4305 0/0:22:22,0:22:854:0:0:0,-6.62266,-77.1636 0/0:6:6,0:6:243:0:0:0,-1.80618,-22.248 0/0:11:11,0:11:444:0:0:0,-3.31133,-40.3151 dDocent_Contig_9082 35 . G A 490.044 . AB=0.5;ABP=3.0103;AC=2;AF=0.25;AN=8;AO=17;CIGAR=1X;DP=102;DPB=102;DPRA=0.5;EPP=39.9253;EPPR=185.414;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=689;QR=3335;RO=84;RPL=0;RPP=39.9253;RPPR=185.414;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=84;SRP=185.414;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:55:55,0:55:2181:0:0:0,-16.5566,-196.465 0/1:24:10,13:10:397:13:526:-40.3542,0,-28.7534 0/0:13:13,0:13:522:0:0:0,-3.91339,-47.3267 0/1:10:6,4:6:235:4:163:-12.0481,0,-18.5105 dDocent_Contig_9083 7 . C T 491.392 . AB=0.0806452;ABP=97.7145;AC=0;AF=0;AN=8;AO=5;CIGAR=1X3M2X1M2X5M;DP=75;DPB=75;DPRA=0;EPP=13.8677;EPPR=96.3836;GTI=0;LEN=1;MEANALT=3.5;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=196;QR=1679;RO=43;RPL=0;RPP=13.8677;RPPR=96.3836;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:10:8,0,2,0:8:315:0,2,0:0,78,0:-4.393,-6.80124,-32.7189,0,-26.308,-25.7059,-6.80124,-32.7189,-26.308,-32.7189 0|0:38:19,2,4,12:19:746:2,4,12:78,157,473:-33.1992,-32.5072,-93.2629,-26.0059,-80.9524,-86.1599,0,-54.9504,-48.4492,-57.7497 0|0:24:15,3,1,5:15:580:3,1,5:118,39,201:-12.0542,-6.865,-53.5895,-13.3647,-51.2868,-60.693,0,-37.9247,-44.4265,-46.1274 0|0:3:1,0,0,2:1:38:0,0,2:0,0,82:-6.87659,-7.17762,-10.2842,-7.17762,-10.2842,-10.2842,0,-3.49624,-3.49624,-2.89418 dDocent_Contig_9084 104 . N T 1696.74 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=55;CIGAR=4X;DP=55;DPB=55;DPRA=0;EPP=122.441;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1863;QR=0;RO=0;RPL=0;RPP=122.441;RPPR=0;RPR=55;RUN=1;SAF=0;SAP=122.441;SAR=55;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:29:0,29:0:0:29:984:-88.8683,-8.72987,0 1|1:13:0,13:0:0:13:445:-40.3773,-3.91339,0 1|1:12:0,12:0:0:12:399:-36.2304,-3.61236,0 1|1:1:0,1:0:0:1:35:-3.49863,-0.30103,0 dDocent_Contig_9085 34 . T A 109.954 . AB=0.115385;ABP=136.639;AC=1;AF=0.125;AN=8;AO=19;CIGAR=1X;DP=238;DPB=238;DPRA=8.15385;EPP=44.2683;EPPR=478.563;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=771;QR=8759;RO=219;RPL=0;RPP=44.2683;RPPR=478.563;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=219;SRP=478.563;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:108:101,7:101:4069:7:286:0,-6.39642,-340.062 0/1:104:92,12:92:3659:12:485:-12.6943,0,-298.018 0/0:7:7,0:7:272:0:0:0,-2.10721,-24.8448 0/0:19:19,0:19:759:0:0:0,-5.71957,-68.6309 dDocent_Contig_9086 17 . A T 840.531 . AB=0.33;ABP=28.1125;AC=2;AF=0.25;AN=8;AO=39;CIGAR=1X;DP=207;DPB=207;DPRA=0;EPP=87.6977;EPPR=365.646;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=59.7904;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1532;QR=6707;RO=167;RPL=0;RPP=87.6977;RPPR=365.646;RPR=39;RUN=1;SAF=39;SAP=87.6977;SAR=0;SRF=167;SRP=365.646;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:37:35,2:35:1397:2:81:0,-3.45238,-118.293 0/1:54:34,20:34:1372:20:808:-56.7792,0,-107.459 0/0:70:65,4:65:2617:4:152:0,-6.88238,-221.658 0/1:46:33,13:33:1321:13:491:-30.6719,0,-105.278 dDocent_Contig_9087 70 . A G 128.485 . AB=0.352941;ABP=6.20364;AC=2;AF=0.25;AN=8;AO=6;CIGAR=1X;DP=49;DPB=49;DPRA=0.53125;EPP=16.0391;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=229;QR=1726;RO=43;RPL=6;RPP=16.0391;RPPR=96.3836;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:13:13,0:13:524:0:0:0,-3.91339,-47.5075 0/0:19:19,0:19:756:0:0:0,-5.71957,-68.3622 0/1:9:5,4:5:200:4:148:-10.9689,0,-15.6703 0/1:8:6,2:6:246:2:81:-5.27749,0,-20.1119 dDocent_Contig_9088 76 . A G 1736.08 . AB=0.641975;ABP=17.1919;AC=5;AF=0.625;AN=8;AO=60;CIGAR=1X;DP=89;DPB=89;DPRA=0;EPP=133.299;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2245;QR=1082;RO=29;RPL=60;RPP=133.299;RPPR=65.983;RPR=0;RUN=1;SAF=60;SAP=133.299;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:7,9:7:258:9:331:-25.3209,0,-18.7552 0/1:45:13,32:13:480:32:1201:-94.8368,0,-29.9923 0/1:20:9,11:9:344:11:429:-32.945,0,-25.2974 1/1:8:0,8:0:0:8:284:-25.903,-2.40824,0 dDocent_Contig_9089 43 . T A 939.465 . AB=0.186916;ABP=94.1107;AC=4;AF=0.5;AN=8;AO=36;CIGAR=1X;DP=137;DPB=137;DPRA=2.92857;EPP=81.1833;EPPR=220.158;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1429;QR=3966;RO=100;RPL=0;RPP=81.1833;RPPR=220.158;RPR=36;RUN=1;SAF=36;SAP=81.1833;SAR=0;SRF=100;SRP=220.158;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:76:63,13:63:2528:13:519:-24.1787,0,-204.775 1/1:16:0,16:0:0:16:634:-57.3959,-4.81648,0 0/1:31:23,7:23:914:7:276:-15.7698,0,-73.1265 0/0:14:14,0:14:524:0:0:0,-4.21442,-47.4816 dDocent_Contig_9091 20 . A G 118.03 . AB=0.139535;ABP=51.5402;AC=2;AF=0.25;AN=8;AO=6;CIGAR=1X3M1X;DP=86;DPB=86;DPRA=1.65385;EPP=16.0391;EPPR=168.042;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=237;QR=3009;RO=76;RPL=0;RPP=16.0391;RPPR=168.042;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=76;SRP=168.042;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:30:26,0,4:26:1021:0,4:0,164:-6.119,-13.9458,-97.904,0,-84.3654,-83.1613 0|1:36:33,3,0:33:1314:3,0:117,0:-0.073132,0,-107.694,-10.0071,-108.597,-118.214 0|0:13:13,0,0:13:517:0,0:0,0:0,-3.91339,-46.8777,-3.91339,-46.8777,-46.8777 0|1:7:4,3,0:4:157:3,0:120,0:-9.08069,0,-12.4016,-10.2848,-13.3047,-23.1931 dDocent_Contig_9092 1 . N G 74.9872 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=79;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:79:-7.49763,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_9093 195 . A G 134.223 . AB=0.5;ABP=3.0103;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=35;DPB=35;DPRA=1.2;EPP=13.8677;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=194;QR=1010;RO=30;RPL=5;RPP=13.8677;RPPR=68.1545;RPR=0;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=68.1545;SRR=30;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:5,5:5:181:5:194:-14.8197,0,-13.6333 0/0:14:14,0:14:476:0:0:0,-4.21442,-43.1587 0/0:1:1,0:1:38:0:0:0,-0.30103,-3.79727 0/0:10:10,0:10:315:0:0:0,-3.0103,-28.6535 dDocent_Contig_9094 1 . N G 44.0896 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=24;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=63;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:63:-4.40786,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_9095 40 . C T 383.593 . AB=0.16129;ABP=157.465;AC=2;AF=0.25;AN=8;AO=25;CIGAR=1X;DP=186;DPB=186;DPRA=5;EPP=57.2971;EPPR=352.617;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=974;QR=6391;RO=161;RPL=0;RPP=57.2971;RPPR=352.617;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=161;SRP=352.617;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:91:83,8:83:3288:8:319:-1.68283,0,-268.579 0/1:64:47,17:47:1878:17:655:-40.0089,0,-149.958 0/0:23:23,0:23:925:0:0:0,-6.92369,-83.554 0/0:8:8,0:8:300:0:0:0,-2.40824,-27.3485 dDocent_Contig_9096 8 . A G 1131.06 . AB=0.452632;ABP=4.86177;AC=4;AF=0.5;AN=8;AO=43;CIGAR=1X;DP=95;DPB=95;DPRA=0;EPP=96.3836;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1641;QR=1987;RO=52;RPL=0;RPP=96.3836;RPPR=115.927;RPR=43;RUN=1;SAF=43;SAP=96.3836;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:15,14:15:578:14:534:-39.6724,0,-43.6328 0/1:28:14,14:14:537:14:534:-39.975,0,-40.2459 0/1:20:10,10:10:375:10:379:-28.4424,0,-28.0791 0/1:18:13,5:13:497:5:194:-12.4143,0,-39.6587 dDocent_Contig_9097 83 . C T 531.315 . AB=0.0571429;ABP=62.6327;AC=0;AF=0;AN=8;AO=2;CIGAR=2X1M;DP=76;DPB=76;DPRA=4.11765;EPP=7.35324;EPPR=85.5263;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=70;QR=1275;RO=38;RPL=2;RPP=7.35324;RPPR=85.5263;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:35:17,11,2,4:17:568:11,2,4:364,70,136:-24.3147,0,-42.6687,-23.7349,-40.2833,-69.1192,-18.3992,-34.9476,-58.6888,-63.1812 0|0:24:6,9,0,9:6:187:9,0,9:296,0,309:-32.2137,-10.104,-22.4004,-34.0199,-25.1097,-49.0321,-8.92193,0,-23.9334,-21.2242 0|0:12:10,1,0,1:10:347:1,0,1:29,0,35:0,-0.731588,-28.636,-3.0103,-28.937,-31.2409,-0.132615,-26.089,-28.3925,-28.0914 0|0:5:5,0,0,0:5:173:0,0,0:0,0,0:0,-1.50515,-15.9102,-1.50515,-15.9102,-15.9102,-1.50515,-15.9102,-15.9102,-15.9102 dDocent_Contig_9098 22 . G A 2900.3 . 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G A 207.694 . AB=0.243243;ABP=24.1968;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X;DP=59;DPB=59;DPRA=5.04545;EPP=22.5536;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=366;QR=1942;RO=50;RPL=0;RPP=22.5536;RPPR=111.584;RPR=9;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=111.584;SRR=50;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:37:28,9:28:1105:9:366:-22.167,0,-88.595 0/0:6:6,0:6:238:0:0:0,-1.80618,-21.7938 0/0:14:14,0:14:517:0:0:0,-4.21442,-46.849 0/0:2:2,0:2:82:0:0:0,-0.60206,-7.77968 dDocent_Contig_9100 7 . C A 5547.84 . AB=0.648649;ABP=59.8207;AC=4;AF=0.5;AN=8;AO=192;CIGAR=1X;DP=296;DPB=296;DPRA=0;EPP=419.933;EPPR=207.469;GTI=0;LEN=1;MEANALT=1.25;MQM=53.9844;MQMR=57.8431;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.539216;PAO=0;PQA=0;PQR=0;PRO=0;QA=7283;QR=3951;RO=102;RPL=0;RPP=419.933;RPPR=224.5;RPR=192;RUN=1;SAF=192;SAP=419.933;SAR=0;SRF=100;SRP=207.469;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:98:32,66:32:1227:66:2540:-198.131,0,-81.2247 0/1:94:39,53:39:1502:53:1986:-148.894,0,-107.375 0/1:77:25,52:25:984:52:1969:-152.491,0,-59.4538 0/1:27:6,21:6:238:21:788:-62.6657,0,-7.2594 dDocent_Contig_9101 154 . A G 507.675 . AB=0.4;ABP=3.44459;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X2M1X2M1X;DP=43;DPB=43;DPRA=0.714286;EPP=7.35324;EPPR=55.1256;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=76;QR=914;RO=24;RPL=0;RPP=7.35324;RPPR=55.1256;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=55.1256;SRR=24;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:22:9,0,13:9:341:0,13:0,524:-40.8846,-43.5939,-71.5401,0,-28.3346,-24.4212 1|0:5:0,2,2:0:0:2,2:76,82:-13.2603,-6.99447,-6.39241,-6.43896,0,-5.8369 0|0:9:8,0,1:8:296:0,1:0,40:-1.28641,-3.69465,-27.8782,0,-24.5798,-24.2788 0|0:7:7,0,0:7:277:0,0:0,0:0,-2.10721,-25.3003,-2.10721,-25.3003,-25.3003 dDocent_Contig_9102 25 . C A 218.228 . AB=0.533333;ABP=3.15506;AC=2;AF=0.25;AN=8;AO=9;CIGAR=1X2M1X;DP=53;DPB=53;DPRA=0.402778;EPP=22.5536;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=353;QR=1651;RO=42;RPL=0;RPP=22.5536;RPPR=94.2121;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:14:13,1:13:511:1:35:0,-0.715791,-42.8397 0|0:24:23,0:23:907:0:0:0,-6.92369,-81.8283 0|1:6:1,4:1:36:4:158:-12.9364,0,-1.86321 0|1:9:5,4:5:197:4:160:-12.0745,0,-15.3971 dDocent_Contig_9103 31 . C A 150.834 . AB=0.272727;ABP=17.8158;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X;DP=70;DPB=70;DPRA=2.67568;EPP=22.5536;EPPR=135.47;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=290;QR=2108;RO=61;RPL=0;RPP=22.5536;RPPR=135.47;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=61;SRP=135.47;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:33:24,9:24:836:9:290:-16.4813,0,-65.6256 0/0:21:21,0:21:730:0:0:0,-6.32163,-66.0206 0/0:12:12,0:12:408:0:0:0,-3.61236,-37.0472 0/0:4:4,0:4:134:0:0:0,-1.20412,-12.3909 dDocent_Contig_9104 185 . G T 884.164 . AB=0.464789;ABP=3.7749;AC=4;AF=0.5;AN=8;AO=33;CIGAR=1X;DP=71;DPB=71;DPRA=0;EPP=74.6689;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.969697;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1286;QR=1475;RO=38;RPL=33;RPP=74.6689;RPPR=85.5263;RPR=0;RUN=1;SAF=0;SAP=74.6689;SAR=33;SRF=0;SRP=85.5263;SRR=38;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:14,9:14:561:9:354:-25.2981,0,-43.9072 0/1:14:9,5:9:352:5:200:-14.1651,0,-27.8224 0/1:18:5,13:5:171:13:498:-39.739,0,-10.2935 0/1:16:10,6:10:391:6:234:-16.6121,0,-30.721 dDocent_Contig_9105 55 . G A 77.9855 . AB=0;ABP=0;AC=2;AF=0.25;AN=8;AO=2;CIGAR=1X;DP=37;DPB=37;DPRA=0.171429;EPP=7.35324;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.38813e-21;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=79;QR=1404;RO=35;RPL=2;RPP=7.35324;RPPR=79.0118;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:9:9,0:9:357:0:0:0,-2.70927,-32.4925 0/0:17:17,0:17:683:0:0:0,-5.11751,-61.8011 0/0:9:9,0:9:364:0:0:0,-2.70927,-33.1244 1/1:2:0,2:0:0:2:79:-7.49724,-0.60206,0 dDocent_Contig_9106 11 . T G 1540.1 . AB=0.287037;ABP=88.0998;AC=4;AF=0.5;AN=8;AO=62;CIGAR=1X;DP=216;DPB=216;DPRA=0;EPP=137.642;EPPR=337.417;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=58.8182;NS=4;NUMALT=1;ODDS=0;PAIRED=0.693548;PAIREDR=0.194805;PAO=0;PQA=0;PQR=0;PRO=0;QA=2501;QR=6169;RO=154;RPL=0;RPP=137.642;RPPR=337.417;RPR=62;RUN=1;SAF=62;SAP=137.642;SAR=0;SRF=154;SRP=337.417;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:37:26,11:26:1051:11:441:-28.9049,0,-83.7382 0/1:92:63,29:63:2516:29:1169:-77.7922,0,-195.479 0/1:60:47,13:47:1874:13:528:-29.8042,0,-149.758 0/1:27:18,9:18:728:9:363:-24.9063,0,-57.7168 dDocent_Contig_9108 7 . C G 85.1657 . AB=0.277778;ABP=10.7311;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X2M1X;DP=49;DPB=49;DPRA=1.74194;EPP=13.8677;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=170;QR=1671;RO=44;RPL=0;RPP=13.8677;RPPR=98.5551;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:12:12,0:12:454:0:0:0,-3.61236,-41.2065 0|1:18:13,5:13:496:5:170:-10.2155,0,-39.5679 0|0:11:11,0:11:419:0:0:0,-3.31133,-38.0613 0|0:8:8,0:8:302:0:0:0,-2.40824,-27.537 dDocent_Contig_9110 23 . T C 3772.22 . AB=0.55042;ABP=8.26563;AC=4;AF=0.5;AN=8;AO=131;CIGAR=1X;DP=238;DPB=238;DPRA=0;EPP=287.473;EPPR=235.358;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=0.816794;PAIREDR=0.841121;PAO=0;PQA=0;PQR=0;PRO=0;QA=5057;QR=3853;RO=107;RPL=0;RPP=287.473;RPPR=235.358;RPR=131;RUN=1;SAF=131;SAP=287.473;SAR=0;SRF=107;SRP=235.358;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:76:57,19:57:2086:19:726:-42.7898,0,-165.111 0/1:56:11,45:11:399:45:1742:-140.17,0,-19.3929 0/1:62:18,44:18:634:44:1711:-135.572,0,-38.7169 0/1:44:21,23:21:734:23:878:-66.088,0,-53.1283 dDocent_Contig_9111 53 . T A 184.991 . AB=0.162791;ABP=87.9502;AC=3;AF=0.375;AN=8;AO=14;CIGAR=1X;DP=91;DPB=91;DPRA=5.73333;EPP=33.4109;EPPR=170.214;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=540;QR=3048;RO=77;RPL=14;RPP=33.4109;RPPR=170.214;RPR=0;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=77;SRP=170.214;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:39:31,8:31:1246:8:305:-16.0635,0,-100.671 0/1:40:36,4:36:1399:4:154:-2.18998,0,-114.121 0/0:5:5,0:5:201:0:0:0,-1.50515,-18.4711 0/1:7:5,2:5:202:2:81:-5.57852,0,-16.4547 dDocent_Contig_9112 14 . A G 588.785 . AB=0.235294;ABP=75.4353;AC=4;AF=0.5;AN=8;AO=28;CIGAR=1X;DP=119;DPB=119;DPRA=0;EPP=63.8115;EPPR=200.614;GTI=0;LEN=1;MEANALT=1;MQM=51.7857;MQMR=59.6044;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1123;QR=3589;RO=91;RPL=0;RPP=63.8115;RPPR=200.614;RPR=28;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=91;SRP=200.614;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:58:48,10:48:1895:10:404:-19.0351,0,-153.256 0/1:42:28,14:28:1121:14:559:-37.6561,0,-88.5229 0/1:7:6,1:6:245:1:40:-1.86622,0,-20.3223 0/1:12:9,3:9:328:3:120:-7.51204,0,-26.2445 dDocent_Contig_9114 55 . G A 236.77 . AB=0.234043;ABP=31.8863;AC=2;AF=0.25;AN=8;AO=11;CIGAR=1X;DP=63;DPB=63;DPRA=2.9375;EPP=26.8965;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=436;QR=2072;RO=52;RPL=11;RPP=26.8965;RPPR=115.927;RPR=0;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:26,10:26:1038:10:395:-25.0684,0,-82.8793 0/0:9:9,0:9:361:0:0:0,-2.70927,-32.8535 0/1:11:10,1:10:400:1:41:-0.783237,0,-33.0488 0/0:7:7,0:7:273:0:0:0,-2.10721,-24.9355 dDocent_Contig_9115 90 . G T 411.148 . 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AB=0.235294;ABP=13.3567;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=45;DPB=45;DPRA=1.82143;EPP=11.6962;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=164;QR=1619;RO=41;RPL=0;RPP=11.6962;RPPR=92.0407;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:17:17,0:17:678:0:0:0,-5.11751,-61.3463 0/1:17:13,4:13:496:4:164:-10.0324,0,-39.858 0/0:2:2,0:2:82:0:0:0,-0.60206,-7.77968 0/0:9:9,0:9:363:0:0:0,-2.70927,-33.0343 dDocent_Contig_9117 45 . C A 2781.46 . AB=0.482927;ABP=3.52933;AC=4;AF=0.5;AN=8;AO=99;CIGAR=1X;DP=205;DPB=205;DPRA=0;EPP=176.75;EPPR=233.186;GTI=0;LEN=1;MEANALT=1;MQM=53.8485;MQMR=59.7547;NS=4;NUMALT=1;ODDS=0;PAIRED=0.282828;PAIREDR=0.650943;PAO=0;PQA=0;PQR=0;PRO=0;QA=3934;QR=4150;RO=106;RPL=94;RPP=176.75;RPPR=233.186;RPR=5;RUN=1;SAF=99;SAP=217.986;SAR=0;SRF=106;SRP=233.186;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:49:14,35:14:558:35:1373:-106.685,0,-35.8098 0/1:51:25,26:25:967:26:1050:-77.4053,0,-71.9694 0/1:85:52,33:52:2027:33:1306:-88.8071,0,-156.915 0/1:20:15,5:15:598:5:205:-12.6465,0,-48.1388 dDocent_Contig_9118 28 . C T 42.5858 . AB=0.108434;ABP=113.546;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X;DP=279;DPB=279;DPRA=1.27041;EPP=22.5536;EPPR=589.308;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=340;QR=10549;RO=270;RPL=0;RPP=22.5536;RPPR=589.308;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=270;SRP=589.308;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:107:107,0:107:4162:0:0:0,-32.2102,-374.596 0/1:83:74,9:74:2886:9:340:-5.95753,0,-234.878 0/0:59:59,0:59:2303:0:0:0,-17.7608,-207.445 0/0:30:30,0:30:1198:0:0:0,-9.0309,-108.097 dDocent_Contig_9119 7 . C T 1861.75 . 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AB=0.194175;ABP=86.6858;AC=4;AF=0.5;AN=8;AO=44;CIGAR=1X;DP=139;DPB=139;DPRA=3.52778;EPP=98.5551;EPPR=209.3;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1673;QR=3385;RO=95;RPL=44;RPP=98.5551;RPPR=209.3;RPR=0;RUN=1;SAF=44;SAP=98.5551;SAR=0;SRF=95;SRP=209.3;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:12:12,0:12:422:0:0:0,-3.61236,-38.311 0/1:64:53,11:53:1887:11:422:-19.0673,0,-150.809 1/1:24:0,24:0:0:24:921:-83.2071,-7.22472,0 0/1:39:30,9:30:1076:9:330:-18.3056,0,-85.3988 dDocent_Contig_9122 58 . C G 1764.6 . AB=0.533333;ABP=4.31318;AC=4;AF=0.5;AN=8;AO=72;CIGAR=1X;DP=135;DPB=135;DPRA=0;EPP=159.356;EPPR=139.813;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.75;PAIREDR=0.936508;PAO=0;PQA=0;PQR=0;PRO=0;QA=2480;QR=2097;RO=63;RPL=72;RPP=159.356;RPPR=139.813;RPR=0;RUN=1;SAF=72;SAP=159.356;SAR=0;SRF=63;SRP=139.813;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:34:16,18:16:542:18:623:-46.1605,0,-38.867 0/1:39:20,19:20:650:19:656:-47.6235,0,-47.0635 0/1:40:20,20:20:664:20:679:-49.3869,0,-48.0303 0/1:22:7,15:7:241:15:522:-40.6875,0,-15.4039 dDocent_Contig_9124 119 . A G 331.622 . 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AB=0.613793;ABP=35.6273;AC=4;AF=0.5;AN=8;AO=178;CIGAR=1X;DP=290;DPB=290;DPRA=0;EPP=389.532;EPPR=229.154;GTI=0;LEN=1;MEANALT=1;MQM=56.8989;MQMR=58.5714;NS=4;NUMALT=1;ODDS=0;PAIRED=0.853933;PAIREDR=0.982143;PAO=0;PQA=0;PQR=0;PRO=0;QA=7078;QR=4439;RO=112;RPL=0;RPP=389.532;RPPR=246.215;RPR=178;RUN=1;SAF=178;SAP=389.532;SAR=0;SRF=110;SRP=229.154;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:90:30,60:30:1208:60:2397:-186.014,0,-81.2921 0/1:85:26,59:26:1014:59:2332:-184.165,0,-65.9639 0/1:72:31,41:31:1204:41:1637:-125.492,0,-86.7902 0/1:43:25,18:25:1013:18:712:-51.0897,0,-78.5194 dDocent_Contig_9126 80 . T C 3725.4 . AB=0.54878;ABP=4.70511;AC=4;AF=0.5;AN=8;AO=136;CIGAR=1X;DP=244;DPB=244;DPRA=0;EPP=298.331;EPPR=237.529;GTI=0;LEN=1;MEANALT=1;MQM=58.2206;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.948529;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4561;QR=3539;RO=108;RPL=136;RPP=298.331;RPPR=237.529;RPR=0;RUN=1;SAF=136;SAP=298.331;SAR=0;SRF=108;SRP=237.529;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:89:0,89:0:0:89:2950:-264.955,-26.7917,0 0/1:29:11,18:11:379:18:615:-45.8425,0,-25.7122 0/0:73:71,2:71:2290:2:70:0,-16.6725,-201.058 0/1:53:26,27:26:870:27:926:-65.1404,0,-62.655 dDocent_Contig_9127 7 . C T 804.228 . 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A C 534.994 . AB=0.2875;ABP=34.3881;AC=2;AF=0.25;AN=8;AO=23;CIGAR=1X;DP=99;DPB=99;DPRA=4.21053;EPP=52.9542;EPPR=168.042;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=892;QR=3020;RO=76;RPL=0;RPP=52.9542;RPPR=168.042;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=76;SRP=168.042;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:18:18,0:18:712:0:0:0,-5.41854,-64.4065 0/1:54:39,15:39:1563:15:581:-36.3717,0,-124.649 0/1:26:18,8:18:709:8:311:-20.5251,0,-56.3026 0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827 dDocent_Contig_9130 186 . G A 171.826 . 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AB=0.346154;ABP=8.35546;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X;DP=69;DPB=69;DPRA=1.81395;EPP=22.5536;EPPR=133.299;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=322;QR=2316;RO=60;RPL=0;RPP=22.5536;RPPR=133.299;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:15:15,0:15:580:0:0:0,-4.51545,-52.5429 0/1:26:17,9:17:654:9:322:-21.4887,0,-51.3677 0/0:18:18,0:18:698:0:0:0,-5.41854,-63.1541 0/0:10:10,0:10:384:0:0:0,-3.0103,-34.9162 dDocent_Contig_9134 10 . T A 598.975 . AB=0.227642;ABP=82.2602;AC=2;AF=0.25;AN=8;AO=28;CIGAR=1X;DP=253;DPB=253;DPRA=0.946154;EPP=63.8115;EPPR=491.592;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=0.986667;PAO=0;PQA=0;PQR=0;PRO=0;QA=1107;QR=8920;RO=225;RPL=0;RPP=63.8115;RPPR=491.592;RPR=28;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=225;SRP=491.592;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:58:58,0:58:2268:0:0:0,-17.4597,-204.294 0/1:96:71,25:71:2848:25:989:-60.4074,0,-227.52 0/0:72:72,0:72:2883:0:0:0,-21.6742,-259.57 0/1:27:24,3:24:921:3:118:-2.87377,0,-75.0559 dDocent_Contig_9135 47 . C T 565.402 . AB=0.267606;ABP=36.3164;AC=4;AF=0.5;AN=8;AO=22;CIGAR=1X;DP=81;DPB=81;DPRA=3.52381;EPP=50.7827;EPPR=131.127;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=891;QR=2364;RO=59;RPL=0;RPP=50.7827;RPPR=131.127;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=59;SRP=131.127;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:35:30,5:30:1203:5:204:-8.20798,0,-98.0068 0/1:36:22,14:22:878:14:564:-40.2652,0,-68.4873 1/1:3:0,3:0:0:3:123:-11.4648,-0.90309,0 0/0:7:7,0:7:283:0:0:0,-2.10721,-25.843 dDocent_Contig_9136 28 . T G 406.77 . AB=0.191919;ABP=84.627;AC=5;AF=0.625;AN=8;AO=22;CIGAR=1X;DP=102;DPB=102;DPRA=0;EPP=50.7827;EPPR=176.728;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=816;QR=3107;RO=80;RPL=0;RPP=50.7827;RPPR=176.728;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=80;SRP=176.728;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:48:35,13:35:1356:13:501:-30.9869,0,-107.861 0/1:43:38,5:38:1481:5:167:-2.40625,0,-120.611 0/1:8:7,1:7:270:1:34:-0.990671,0,-22.2561 1/1:3:0,3:0:0:3:114:-10.6315,-0.90309,0 dDocent_Contig_9137 127 . C T 1252 . AB=0.419847;ABP=10.3204;AC=5;AF=0.625;AN=8;AO=56;CIGAR=1X;DP=132;DPB=132;DPRA=0;EPP=124.613;EPPR=168.042;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1875;QR=2550;RO=76;RPL=0;RPP=124.613;RPPR=168.042;RPR=56;RUN=1;SAF=0;SAP=124.613;SAR=56;SRF=0;SRP=168.042;SRR=76;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:48:22,26:22:764:26:898:-66.6859,0,-54.6318 0/1:57:44,13:44:1457:13:400:-19.1384,0,-114.261 0/1:26:10,16:10:329:16:542:-41.2741,0,-22.1025 1/1:1:0,1:0:0:1:35:-3.49863,-0.30103,0 dDocent_Contig_9138 12 . G A 255.273 . AB=0.2;ABP=57.7314;AC=3;AF=0.375;AN=8;AO=14;CIGAR=1X;DP=83;DPB=83;DPRA=1.79487;EPP=33.4109;EPPR=152.842;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.289855;PAO=0;PQA=0;PQR=0;PRO=0;QA=565;QR=2772;RO=69;RPL=0;RPP=33.4109;RPPR=152.842;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=69;SRP=152.842;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:18,4:18:722:4:157:-7.88563,0,-58.6832 0/1:26:23,3:23:929:3:121:-3.45321,0,-76.0864 0/1:22:15,7:15:595:7:287:-19.5826,0,-47.263 0/0:13:13,0:13:526:0:0:0,-3.91339,-47.6865 dDocent_Contig_9139 46 . A G 661.467 . AB=0.520833;ABP=3.19126;AC=3;AF=0.375;AN=8;AO=25;CIGAR=1X;DP=71;DPB=71;DPRA=0.695652;EPP=57.2971;EPPR=100.727;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=945;QR=1764;RO=45;RPL=0;RPP=57.2971;RPPR=100.727;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:8,11:8:308:11:421:-32.5113,0,-22.3544 0/1:13:9,3:9:356:3:116:-6.80136,0,-28.3813 0/0:23:23,0:23:898:0:0:0,-6.92369,-81.1212 0/1:16:5,11:5:202:11:408:-32.232,0,-13.745 dDocent_Contig_9140 107 . N C 129.452 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=7.37776;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=140;QR=0;RO=0;RPL=0;RPP=11.6962;RPPR=0;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:4:0,4:0:0:4:140:-12.9449,-1.20412,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_9141 11 . A T 201.278 . AB=0.321429;ABP=10.7656;AC=2;AF=0.25;AN=8;AO=9;CIGAR=1M1D1M2X;DP=40;DPB=38.2;DPRA=2.33333;EPP=22.5536;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=0.888889;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=347;QR=1215;RO=31;RPL=0;RPP=22.5536;RPPR=70.3259;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:26:18,8:18:708:8:313:-20.7077,0,-56.2254 0|0:5:5,0:5:197:0:0:0,-1.50515,-18.1064 0|1:2:1,1:1:40:1:34:-2.79685,0,-3.39362 0|0:7:7,0:7:270:0:0:0,-2.10721,-24.663 dDocent_Contig_9142 28 . G A 57.2754 . AB=0.214286;ABP=12.937;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=36;DPB=36;DPRA=1.27273;EPP=9.52472;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=123;QR=1318;RO=33;RPL=0;RPP=9.52472;RPPR=74.6689;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:11,3:11:447:3:123:-7.25037,0,-36.3711 0/0:17:17,0:17:675:0:0:0,-5.11751,-61.0775 0/0:5:5,0:5:196:0:0:0,-1.50515,-18.0138 ./.:.:.:.:.:.:.:. dDocent_Contig_9143 9 . C A 220.93 . AB=0.346154;ABP=8.35546;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X;DP=108;DPB=108;DPRA=0.95122;EPP=22.5536;EPPR=90.0666;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=44.0707;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.444444;PAO=0;PQA=0;PQR=0;PRO=0;QA=344;QR=3760;RO=99;RPL=0;RPP=22.5536;RPPR=217.986;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=81;SRP=90.0666;SRR=18;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:17,9:17:636:9:344:-23.4909,0,-42.6458 0/0:49:49,0:49:1847:0:0:0,-14.7505,-149.545 0/0:18:18,0:18:695:0:0:0,-5.41854,-57.1055 0/0:15:15,0:15:582:0:0:0,-4.51545,-46.7155 dDocent_Contig_9144 13 . G A 327.49 . AB=0.35;ABP=6.91895;AC=3;AF=0.375;AN=8;AO=11;CIGAR=1X;DP=39;DPB=39;DPRA=1.6;EPP=26.8965;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=438;QR=1119;RO=28;RPL=0;RPP=26.8965;RPPR=63.8115;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:10:10,0:10:408:0:0:0,-3.0103,-37.0806 0/0:5:5,0:5:190:0:0:0,-1.50515,-17.4637 0/1:20:13,7:13:521:7:281:-19.6405,0,-41.2156 1/1:4:0,4:0:0:4:157:-14.5064,-1.20412,0 dDocent_Contig_9145 31 . C A 127.433 . AB=0.333333;ABP=7.35324;AC=2;AF=0.25;AN=8;AO=6;CIGAR=1X;DP=28;DPB=28;DPRA=1.8;EPP=16.0391;EPPR=42.4916;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.909091;PAO=0;PQA=0;PQR=0;PRO=0;QA=231;QR=840;RO=22;RPL=0;RPP=16.0391;RPPR=50.7827;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=21;SRP=42.4916;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:9,5:9:338:5:195:-13.7051,0,-26.5477 0/0:8:8,0:8:307:0:0:0,-2.40824,-27.9874 0/1:4:3,1:3:114:1:36:-2.39415,0,-9.42698 0/0:2:2,0:2:81:0:0:0,-0.60206,-7.68573 dDocent_Contig_9146 32 . A T 4483.75 . AB=0.114053;ABP=638.27;AC=4;AF=0.5;AN=8;AO=56;CIGAR=1X1M1X1M1X5M;DP=491;DPB=487;DPRA=0;EPP=124.613;EPPR=0;GTI=0;LEN=1;MEANALT=11.25;MQM=35.2679;MQMR=0;NS=4;NUMALT=8;ODDS=0;PAIRED=0.714286;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1943;QR=0;RO=0;RPL=0;RPP=124.613;RPPR=0;RPR=56;RUN=1;SAF=56;SAP=124.613;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:204:0,12,19,2,0,58,17,71,0:0:0:12,19,2,0,58,17,71,0:123,363,35,0,883,624,1977,0:-189.007,-184.48,-180.868,-167.106,-162.58,-161.386,-186.995,-182.468,-165.093,-186.392,-189.007,-184.48,-167.106,-186.995,-189.007,-141.77,-137.249,-119.875,-139.758,-141.77,-124.311,-142.469,-137.942,-120.566,-140.456,-142.469,-95.2297,-137.351,-47.2335,-42.7078,-25.3288,-45.2203,-47.2335,0,-0.682345,-25.8603,-189.007,-184.48,-167.106,-186.995,-189.007,-141.77,-142.469,-47.2335,-189.007 1|0:123:0,15,12,3,0,37,11,31,0:0:0:15,12,3,0,37,11,31,0:202,216,99,0,488,356,891,0:-89.7535,-79.3966,-74.8812,-77.0422,-66.6869,-73.4298,-82.556,-72.199,-69.8444,-81.6529,-89.7535,-79.3966,-77.0422,-82.556,-89.7535,-66.4191,-56.0738,-53.7144,-59.2214,-66.4191,-55.281,-63.5791,-53.2215,-50.8667,-56.381,-63.5791,-40.2436,-60.2678,-26.1827,-15.8242,-13.4683,-18.9832,-26.1827,-2.84728,0,-16.8508,-89.7535,-79.3966,-77.0422,-82.556,-89.7535,-66.4191,-63.5791,-26.1827,-89.7535 1|0:114:0,4,9,1,9,31,17,33,0:0:0:4,9,1,9,31,17,33,0:22,179,16,355,537,585,1059,0:-121.149,-121.221,-120.017,-110.099,-110.172,-107.39,-120.277,-120.349,-109.227,-119.976,-112.356,-112.429,-101.307,-111.484,-109.646,-90.4304,-90.5065,-79.3858,-89.5589,-81.6437,-81.0984,-78.1517,-78.2242,-67.1009,-77.2795,-69.3582,-47.4332,-73.0342,-43.0135,-43.0868,-31.9617,-42.1413,-34.2197,-12.2958,0,-33.0795,-121.149,-121.221,-110.099,-120.277,-112.356,-90.4304,-78.1517,-43.0135,-121.149 1|0:50:0,6,5,3,0,4,11,15,3:0:0:6,5,3,0,4,11,15,3:119,91,69,0,60,378,397,57:-55.8405,-48.0692,-46.263,-50.4697,-42.7001,-48.9646,-51.3057,-43.5349,-45.9355,-50.4026,-55.8405,-48.0692,-50.4697,-51.3057,-55.8405,-52.7115,-44.9419,-47.3424,-48.1774,-52.7115,-51.5074,-27.5329,-19.7579,-22.16,-22.9959,-27.5329,-24.4031,-24.2216,-28.3308,-20.56,-22.9617,-23.7954,-28.3308,-25.2044,0,-23.8153,-52.4224,-44.652,-47.0525,-47.8879,-52.4224,-49.2943,-24.1134,-24.9133,-51.5193 dDocent_Contig_9147 14 . G A 1821.26 . AB=0.0735294;ABP=110.434;AC=0;AF=0;AN=8;AO=5;CIGAR=1X2M3I2M2I2M1X4M1X1M3D1X3M1D5M;DP=664;DPB=681.333;DPRA=0;EPP=13.8677;EPPR=765.197;GTI=0;LEN=1;MEANALT=10;MQM=45;MQMR=60;NS=4;NUMALT=5;ODDS=0;PAIRED=1;PAIREDR=0;PAO=8.16667;PQA=321;PQR=321;PRO=8.16667;QA=195;QR=13554;RO=351;RPL=0;RPP=13.8677;RPPR=765.197;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=351;SRP=765.197;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:244:171,0,17,14,23,2:171:6628:0,17,14,23,2:0,400,335,771,73:-7.08966,-58.5658,-603.13,-32.2943,-576.844,-571.727,-35.4567,-580.012,-553.728,-575.798,0,-544.581,-518.297,-521.465,-537.657,-52.6049,-597.171,-570.886,-574.053,-538.622,-596.569 0|0:189:84,0,9,28,27,2:84:3213:0,9,28,27,2:0,251,655,1013,64:-51.9833,-77.2699,-340.948,-59.075,-322.754,-320.045,-32.262,-295.934,-277.742,-287.505,0,-263.698,-245.504,-218.687,-255.57,-72.3856,-336.065,-317.871,-291.051,-258.814,-335.463 0|0:163:66,0,0,30,45,1:66:2546:0,0,30,45,1:0,0,647,1493,40:-91.9809,-111.849,-320.958,-111.849,-320.958,-320.958,-68.7385,-277.84,-277.84,-268.81,0,-209.144,-209.144,-166.042,-195.598,-108.552,-317.663,-317.663,-274.545,-205.849,-317.362 0|0:68:30,5,0,2,17,6:30:1167:5,0,2,17,6:195,0,53,622,226:-38.4705,-31.8995,-126.319,-47.5014,-127.824,-143.423,-43.6153,-123.936,-139.534,-138.932,0,-80.3257,-95.9236,-92.037,-90.8061,-29.1563,-109.483,-125.081,-121.193,-77.583,-123.275 dDocent_Contig_9149 85 . G A 31.9068 . AB=0.16;ABP=28.1125;AC=2;AF=0.25;AN=8;AO=5;CIGAR=1X;DP=58;DPB=58;DPRA=0.740741;EPP=13.8677;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=0.6;PAIREDR=0.716981;PAO=0;PQA=0;PQR=0;PRO=0;QA=170;QR=1770;RO=53;RPL=5;RPP=13.8677;RPPR=118.098;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:18:18,0:18:609:0:0:0,-5.41854,-55.1297 0/1:9:8,1:8:277:1:31:-0.390184,0,-22.5577 0/0:15:14,1:14:487:1:35:0,-1.01682,-40.6626 0/1:16:13,3:13:397:3:104:-4.88661,0,-31.2064 dDocent_Contig_9150 26 . G T 1169.95 . AB=0.43299;ABP=6.79359;AC=3;AF=0.375;AN=8;AO=42;CIGAR=1X;DP=131;DPB=131;DPRA=0.95098;EPP=94.2121;EPPR=196.271;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.8427;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.988764;PAO=0;PQA=0;PQR=0;PRO=0;QA=1673;QR=3502;RO=89;RPL=0;RPP=94.2121;RPPR=196.271;RPR=42;RUN=1;SAF=42;SAP=94.2121;SAR=0;SRF=89;SRP=196.271;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:34:34,0:34:1346:0:0:0,-10.235,-121.408 0/1:44:19,25:19:739:25:998:-76.8692,0,-53.5855 0/1:38:27,11:27:1067:11:431:-27.7005,0,-84.8817 0/1:15:9,6:9:350:6:244:-17.8234,0,-27.252 dDocent_Contig_9151 9 . C T 571.717 . AB=0.194286;ABP=145.074;AC=4;AF=0.5;AN=8;AO=34;CIGAR=1X;DP=175;DPB=175;DPRA=0;EPP=76.8404;EPPR=309.188;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1287;QR=5450;RO=141;RPL=0;RPP=76.8404;RPPR=309.188;RPR=34;RUN=1;SAF=34;SAP=76.8404;SAR=0;SRF=141;SRP=309.188;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:94:78,16:78:3003:16:606:-26.5794,0,-242.135 0/1:45:39,6:39:1514:6:227:-7.24679,0,-122.985 0/1:22:17,5:17:662:5:183:-10.2015,0,-53.2945 0/1:14:7,7:7:271:7:271:-20.5419,0,-20.5419 dDocent_Contig_9152 120 . T G 34.012 . AB=0;ABP=0;AC=2;AF=0.25;AN=8;AO=3;CIGAR=1X;DP=46;DPB=46;DPRA=1.42105;EPP=9.52472;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.333333;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=71;QR=1295;RO=43;RPL=0;RPP=9.52472;RPPR=96.3836;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=96.3836;SRR=43;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:26:24,2:24:706:2:40:0,-4.02808,-60.0196 0/0:9:9,0:9:263:0:0:0,-2.70927,-23.9562 0/0:10:10,0:10:326:0:0:0,-3.0103,-29.6577 1/1:1:0,1:0:0:1:31:-3.09945,-0.30103,0 dDocent_Contig_9153 11 . T C 2636.6 . AB=0.545455;ABP=5.18177;AC=5;AF=0.625;AN=8;AO=86;CIGAR=1X;DP=142;DPB=142;DPRA=0;EPP=189.757;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3426;QR=2246;RO=56;RPL=0;RPP=189.757;RPPR=124.613;RPR=86;RUN=1;SAF=86;SAP=189.757;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:37:17,20:17:678:20:793:-60.5487,0,-50.2108 0/1:41:17,24:17:681:24:972:-75.4352,0,-49.2756 0/1:43:21,22:21:846:22:876:-66.2047,0,-63.5076 1/1:21:1,20:1:41:20:785:-66.8695,-2.22706,0 dDocent_Contig_9154 17 . C G 49.3219 . AB=0.113208;ABP=71.8828;AC=2;AF=0.25;AN=8;AO=6;CIGAR=1X;DP=97;DPB=97;DPRA=1.20455;EPP=16.0391;EPPR=200.614;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.333333;PAIREDR=0.934066;PAO=0;PQA=0;PQR=0;PRO=0;QA=244;QR=3623;RO=91;RPL=0;RPP=16.0391;RPPR=200.614;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=91;SRP=200.614;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:23,2:23:919:2:81:-0.159984,0,-75.4859 0/1:28:24,4:24:965:4:163:-6.62959,0,-78.7209 0/0:32:32,0:32:1257:0:0:0,-9.63296,-113.4 0/0:12:12,0:12:482:0:0:0,-3.61236,-43.7309 dDocent_Contig_9155 12 . G A 580.295 . AB=0.210145;ABP=103.716;AC=4;AF=0.5;AN=8;AO=29;CIGAR=1X;DP=138;DPB=138;DPRA=0;EPP=65.983;EPPR=239.701;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.981651;PAO=0;PQA=0;PQR=0;PRO=0;QA=1172;QR=4318;RO=109;RPL=0;RPP=65.983;RPPR=239.701;RPR=29;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=109;SRP=239.701;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:55:45,10:45:1790:10:401:-19.8918,0,-144.758 0/1:31:24,7:24:952:7:283:-16.5111,0,-76.6475 0/1:39:29,10:29:1131:10:407:-25.2504,0,-90.3265 0/1:13:11,2:11:445:2:81:-3.77234,0,-36.4912 dDocent_Contig_9156 66 . T A 185.201 . AB=0.175676;ABP=70.6194;AC=2;AF=0.25;AN=8;AO=13;CIGAR=1X;DP=124;DPB=124;DPRA=1.48;EPP=31.2394;EPPR=241.872;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=481;QR=4175;RO=110;RPL=13;RPP=31.2394;RPPR=241.872;RPR=0;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=110;SRP=241.872;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:59:50,8:50:1901:8:289:-8.78345,0,-153.792 0/0:43:43,0:43:1637:0:0:0,-12.9443,-147.596 0/1:15:10,5:10:375:5:192:-13.1346,0,-29.5855 0/0:7:7,0:7:262:0:0:0,-2.10721,-23.9362 dDocent_Contig_9158 55 . A G 59.6888 . AB=0.25;ABP=9.52472;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=65;DPB=65;DPRA=0.679245;EPP=9.52472;EPPR=137.642;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.870968;PAO=0;PQA=0;PQR=0;PRO=0;QA=121;QR=2454;RO=62;RPL=3;RPP=9.52472;RPPR=137.642;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:25:25,0:25:988:0:0:0,-7.52575,-89.2192 0/0:21:21,0:21:824:0:0:0,-6.32163,-74.4763 0/0:7:7,0:7:281:0:0:0,-2.10721,-25.6622 0/1:12:9,3:9:361:3:121:-7.66784,0,-29.2412 dDocent_Contig_9159 33 . C G 196.228 . AB=0.264706;ABP=19.3602;AC=2;AF=0.25;AN=8;AO=9;CIGAR=1X;DP=52;DPB=52;DPRA=1.88889;EPP=22.5536;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=361;QR=1711;RO=43;RPL=0;RPP=22.5536;RPPR=96.3836;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:11,6:11:438:6:239:-16.7657,0,-34.6566 0/1:17:14,3:14:553:3:122:-6.25498,0,-44.9903 0/0:13:13,0:13:517:0:0:0,-3.91339,-46.8763 0/0:5:5,0:5:203:0:0:0,-1.50515,-18.6531 dDocent_Contig_9161 24 . A G 873.579 . AB=0.566038;ABP=5.01789;AC=3;AF=0.375;AN=8;AO=30;CIGAR=1X;DP=73;DPB=73;DPRA=0.883333;EPP=68.1545;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1196;QR=1663;RO=43;RPL=0;RPP=68.1545;RPPR=96.3836;RPR=30;RUN=1;SAF=30;SAP=68.1545;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:20:20,0:20:775:0:0:0,-6.0206,-70.063 0/1:24:4,20:4:139:20:802:-65.2743,0,-5.61953 0/1:20:12,8:12:466:8:315:-22.693,0,-36.2662 0/1:9:7,2:7:283:2:79:-4.78836,0,-23.1337 dDocent_Contig_9162 27 . C A 147.328 . AB=0.0846774;ABP=374.577;AC=3;AF=0.375;AN=8;AO=21;CIGAR=1X1M1X5M1I5M1X3M;DP=248;DPB=250.235;DPRA=0;EPP=48.6112;EPPR=454.677;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=782;QR=8203;RO=208;RPL=0;RPP=48.6112;RPPR=454.677;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=208;SRP=454.677;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:90:76,8,6:76:3010:8,6:314,224:-2.95657,0,-245.354,-7.50556,-229.426,-253.444 0|1:53:44,5,3:44:1732:5,3:187,120:-2.05223,0,-140.966,-5.40626,-132.586,-146.995 0|1:73:64,7,1:64:2527:7,1:241,38:-0.380127,0,-205.974,-16.5222,-204.965,-224.225 0|0:32:24,1,7:24:934:1,7:40,271:-15.0232,-18.9512,-95.408,0,-73.4504,-74.6387 dDocent_Contig_9163 39 . G T 268.316 . AB=0.166667;ABP=101.45;AC=2;AF=0.25;AN=8;AO=21;CIGAR=1X;DP=157;DPB=157;DPRA=12.75;EPP=48.6112;EPPR=298.331;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.3971;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.985294;PAO=0;PQA=0;PQR=0;PRO=0;QA=815;QR=5198;RO=136;RPL=0;RPP=48.6112;RPPR=298.331;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=136;SRP=298.331;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:71:62,9:62:2390:9:351:-10.5753,0,-192.019 0/0:51:47,4:47:1773:4:146:0,-1.85822,-146.303 0/1:31:23,8:23:882:8:318:-19.6542,0,-68.636 0/0:4:4,0:4:153:0:0:0,-1.20412,-14.1414 dDocent_Contig_9165 86 . C A 247.92 . AB=0.264151;ABP=28.6173;AC=2;AF=0.25;AN=8;AO=14;CIGAR=1X;DP=89;DPB=89;DPRA=1.47222;EPP=33.4109;EPPR=165.871;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.928571;PAIREDR=0.973333;PAO=0;PQA=0;PQR=0;PRO=0;QA=483;QR=2558;RO=75;RPL=14;RPP=33.4109;RPPR=165.871;RPR=0;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=75;SRP=165.871;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:16,6:16:553:6:208:-12.437,0,-43.4746 0/1:31:23,8:23:768:8:275:-15.753,0,-60.0969 0/0:20:20,0:20:685:0:0:0,-6.0206,-61.9708 0/0:16:16,0:16:552:0:0:0,-4.81648,-50.007 dDocent_Contig_9166 31 . T C 198.631 . AB=0.28125;ABP=16.3106;AC=2;AF=0.25;AN=8;AO=11;CIGAR=1X;DP=81;DPB=81;DPRA=1.01667;EPP=26.8965;EPPR=155.013;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=439;QR=2780;RO=70;RPL=0;RPP=26.8965;RPPR=155.013;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=70;SRP=155.013;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:20:20,0:20:779:0:0:0,-6.0206,-70.431 0/0:29:27,2:27:1096:2:82:0,-0.950192,-91.1425 0/1:15:8,7:8:322:7:285:-21.5087,0,-24.8318 0/1:17:15,2:15:583:2:72:-1.71681,0,-47.6837 dDocent_Contig_9167 34 . A T 208.997 . AB=0.217391;ABP=34.9215;AC=2;AF=0.25;AN=8;AO=10;CIGAR=1X;DP=84;DPB=84;DPRA=1.21053;EPP=24.725;EPPR=163.699;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=404;QR=2971;RO=74;RPL=0;RPP=24.725;RPPR=163.699;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=74;SRP=163.699;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:27,9:27:1085:9:364:-22.2873,0,-87.1008 0/0:29:29,0:29:1157:0:0:0,-8.72987,-104.405 0/1:10:9,1:9:364:1:40:-0.985379,0,-30.1141 0/0:9:9,0:9:365:0:0:0,-2.70927,-33.2151 dDocent_Contig_9168 67 . A G 61.9451 . AB=0.210526;ABP=16.8392;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=59;DPB=59;DPRA=1.425;EPP=11.6962;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=144;QR=2051;RO=55;RPL=4;RPP=11.6962;RPPR=122.441;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:15,4:15:539:4:144:-7.59232,0,-43.1183 0/0:21:21,0:21:794:0:0:0,-6.32163,-71.7858 0/0:16:16,0:16:601:0:0:0,-4.81648,-54.4244 0/0:3:3,0:3:117:0:0:0,-0.90309,-10.9104 dDocent_Contig_9169 10 . A G 1443.21 . AB=0.175418;ABP=769.856;AC=3;AF=0.375;AN=8;AO=162;CIGAR=1X;DP=994;DPB=994;DPRA=0;EPP=354.789;EPPR=1801;GTI=0;LEN=1;MEANALT=1;MQM=40.1111;MQMR=56.7404;NS=4;NUMALT=1;ODDS=5.55112e-17;PAIRED=0.302469;PAIREDR=0.760817;PAO=0;PQA=0;PQR=0;PRO=0;QA=6384;QR=32905;RO=832;RPL=0;RPP=354.789;RPPR=1809.68;RPR=162;RUN=1;SAF=162;SAP=354.789;SAR=0;SRF=831;SRP=1801;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:254:209,45:209:8269:45:1809:-51.1089,0,-656.976 0/1:332:289,43:289:11462:43:1671:-27.3723,0,-892.068 0/1:252:193,59:193:7617:59:2320:-71.2382,0,-586.023 0/0:156:141,15:141:5557:15:584:0,-7.80791,-452.87 dDocent_Contig_9170 18 . C A 175.03 . AB=0.266667;ABP=17.1973;AC=2;AF=0.25;AN=8;AO=8;CIGAR=1X;DP=59;DPB=59;DPRA=1.03448;EPP=20.3821;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=324;QR=2030;RO=51;RPL=0;RPP=20.3821;RPPR=113.755;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:13:13,0:13:501:0:0:0,-3.91339,-45.4272 0/1:21:18,3:18:718:3:120:-4.86606,0,-58.6235 0/0:16:16,0:16:648:0:0:0,-4.81648,-58.6531 0/1:9:4,5:4:163:5:204:-16.0348,0,-12.3492 dDocent_Contig_9171 15 . T C 157.04 . AB=0.333333;ABP=7.35324;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=45;DPB=45;DPRA=4.625;EPP=18.2106;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=287;QR=1533;RO=38;RPL=0;RPP=18.2106;RPPR=85.5263;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:12,6:12:487:6:246:-17.1016,0,-38.7625 0/0:19:18,1:18:733:1:41:0,-1.625,-62.1986 0/0:6:6,0:6:231:0:0:0,-1.80618,-21.156 0/0:2:2,0:2:82:0:0:0,-0.60206,-7.77968 dDocent_Contig_9172 46 . A G 31.3773 . AB=0.15;ABP=24.2907;AC=2;AF=0.25;AN=8;AO=3;CIGAR=1M1I6M1X2M;DP=31;DPB=31.3;DPRA=1.81818;EPP=9.52472;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=111;QR=1018;RO=26;RPL=0;RPP=9.52472;RPPR=59.4686;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:9:6,2:6:237:2:75:-4.53311,0,-19.1705 0|1:11:10,1:10:387:1:36:-0.286945,0,-31.8744 0|0:4:3,0:3:118:0:0:0,-0.90309,-10.8446 0|0:7:7,0:7:276:0:0:0,-2.10721,-25.2097 dDocent_Contig_9173 7 . C A 1501.36 . AB=0.486726;ABP=3.18325;AC=4;AF=0.5;AN=8;AO=55;CIGAR=1X;DP=113;DPB=113;DPRA=0;EPP=122.441;EPPR=128.956;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.527273;PAIREDR=0.655172;PAO=0;PQA=0;PQR=0;PRO=0;QA=2113;QR=2223;RO=58;RPL=0;RPP=122.441;RPPR=128.956;RPR=55;RUN=1;SAF=55;SAP=122.441;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:13,16:13:494:16:619:-47.3202,0,-36.0764 0/1:34:13,21:13:505:21:805:-62.5403,0,-35.564 0/1:32:19,13:19:719:13:499:-35.6252,0,-55.4036 0/1:18:13,5:13:505:5:190:-12.0486,0,-40.3807 dDocent_Contig_9174 16 . A T 449.363 . AB=0.253165;ABP=44.818;AC=3;AF=0.375;AN=8;AO=21;CIGAR=1X;DP=111;DPB=111;DPRA=0;EPP=48.6112;EPPR=198.443;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=851;QR=3585;RO=90;RPL=0;RPP=48.6112;RPPR=198.443;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=90;SRP=198.443;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:41:36,5:36:1447:5:204:-6.4018,0,-118.137 0/0:32:31,1:31:1236:1:40:0,-5.63728,-107.513 0/1:30:18,12:18:702:12:486:-35.0607,0,-54.4713 0/1:8:5,3:5:200:3:121:-8.87175,0,-15.9702 dDocent_Contig_9175 52 . C T 349.843 . AB=0.297872;ABP=19.6891;AC=1;AF=0.125;AN=8;AO=17;CIGAR=1X;DP=136;DPB=136;DPRA=2.88571;EPP=39.9253;EPPR=261.416;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=0.411765;PAIREDR=0.680672;PAO=0;PQA=0;PQR=0;PRO=0;QA=677;QR=4659;RO=119;RPL=17;RPP=39.9253;RPPR=261.416;RPR=0;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=119;SRP=261.416;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:24:24,0:24:952:0:0:0,-7.22472,-85.9841 0/0:54:51,3:51:1992:3:116:0,-5.44011,-168.669 0/1:47:33,14:33:1284:14:561:-36.6833,0,-101.682 0/0:11:11,0:11:431:0:0:0,-3.31133,-39.1415 dDocent_Contig_9176 98 . N T 149.484 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=5;CIGAR=1M1D13M1X;DP=5;DPB=5.25;DPRA=0;EPP=13.8677;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=1.5;PQA=49.5;PQR=49.5;PRO=1.5;QA=157;QR=0;RO=0;RPL=5;RPP=13.8677;RPPR=0;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. 1|1:4:0,4:0:0:4:122:-11.1474,-1.20412,0 1|1:1:0,1:0:0:1:35:-3.49863,-0.30103,0 dDocent_Contig_9177 85 . A C 637.792 . AB=0.21;ABP=76.0586;AC=4;AF=0.5;AN=8;AO=21;CIGAR=1X2M2X;DP=142;DPB=142;DPRA=0;EPP=48.6112;EPPR=194.1;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.952381;PAIREDR=0.727273;PAO=0;PQA=0;PQR=0;PRO=0;QA=710;QR=2954;RO=88;RPL=21;RPP=48.6112;RPPR=194.1;RPR=0;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=88;SRP=194.1;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:42:32,7,0:32:1101:7,0:243,0:-10.157,0,-87.357,-19.7899,-89.4642,-109.22 0|1:50:24,11,15:24:810:11,15:380,502:-33.4187,-9.76247,-72.1028,0,-34.7656,-61.129 0|1:41:24,12,5:24:771:12,5:405,173:-25.5949,0,-58.5102,-18.7579,-48.0591,-79.385 0|1:9:8,0,1:8:272:0,1:0,35:-0.789359,-3.1976,-25.2525,0,-22.4037,-22.1026 dDocent_Contig_9178 59 . T A 237.987 . AB=0.236364;ABP=36.2141;AC=3;AF=0.375;AN=8;AO=13;CIGAR=1X;DP=75;DPB=75;DPRA=0.916667;EPP=31.2394;EPPR=137.642;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=496;QR=2377;RO=62;RPL=13;RPP=31.2394;RPPR=137.642;RPR=0;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:10,8:10:387:8:307:-22.5723,0,-29.769 0/1:26:23,3:23:881:3:116:-2.99092,0,-71.7825 0/0:20:20,0:20:760:0:0:0,-6.0206,-68.7276 0/1:11:9,2:9:349:2:73:-3.61997,0,-28.4594 dDocent_Contig_9179 98 . N A 282.054 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=9;CIGAR=1X;DP=9;DPB=9;DPRA=0;EPP=22.5536;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=303;QR=0;RO=0;RPL=9;RPP=22.5536;RPPR=0;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:7:0,7:0:0:7:244:-22.3,-2.10721,0 1/1:2:0,2:0:0:2:59:-5.60384,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_9180 76 . T C 87.3658 . AB=0.122222;ABP=114.576;AC=2;AF=0.25;AN=8;AO=14;CIGAR=1X;DP=229;DPB=229;DPRA=1.13462;EPP=33.4109;EPPR=469.877;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.995349;PAO=0;PQA=0;PQR=0;PRO=0;QA=541;QR=8175;RO=215;RPL=14;RPP=33.4109;RPPR=469.877;RPR=0;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=215;SRP=469.877;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:87:84,3:84:3180:3:114:0,-15.5576,-275.718 0/1:73:64,9:64:2448:9:349:-9.7957,0,-198.549 0/0:52:52,0:52:1975:0:0:0,-15.6536,-177.99 0/1:17:15,2:15:572:2:78:-2.28596,0,-46.7036 dDocent_Contig_9181 9 . C A 7299.93 . AB=0.0416222;ABP=1713.03;AC=0;AF=0;AN=8;AO=39;CIGAR=1X2M1X;DP=937;DPB=937;DPRA=0;EPP=87.6977;EPPR=1251.61;GTI=0;LEN=1;MEANALT=4.25;MQM=60;MQMR=59.9165;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.00869565;PAO=0;PQA=0;PQR=0;PRO=0;QA=1530;QR=22409;RO=575;RPL=0;RPP=87.6977;RPPR=1251.61;RPR=39;RUN=1;SAF=39;SAP=87.6977;SAR=0;SRF=575;SRP=1251.61;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:301:190,16,77:190:7427:16,77:626,3080:-196.076,-201.801,-807.579,0,-559.136,-587.428 0|0:239:137,20,71:137:5353:20,71:785,2799:-187.23,-163.907,-597.962,0,-375.528,-418.718 0|0:261:146,1,105:146:5677:1,105:40,4126:-288.058,-328.713,-794.588,0,-462.9,-434.587 0|0:136:102,2,30:102:3952:2,30:79,1192:-66.0261,-90.2299,-414.275,0,-318.167,-315.637 dDocent_Contig_9182 25 . A G 1477.18 . AB=0.423077;ABP=9.69175;AC=4;AF=0.5;AN=8;AO=55;CIGAR=1X;DP=130;DPB=130;DPRA=0;EPP=122.441;EPPR=165.871;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2143;QR=2995;RO=75;RPL=0;RPP=122.441;RPPR=165.871;RPR=55;RUN=1;SAF=55;SAP=122.441;SAR=0;SRF=75;SRP=165.871;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:43:24,19:24:960:19:738:-53.7935,0,-73.7559 0/1:35:29,6:29:1160:6:246:-11.9841,0,-94.1432 0/1:35:20,15:20:793:15:596:-43.4423,0,-61.1509 0/1:17:2,15:2:82:15:563:-45.8734,0,-2.66217 dDocent_Contig_9184 42 . A C 800.684 . AB=0.126562;ABP=778.24;AC=3;AF=0.375;AN=8;AO=93;CIGAR=1X;DP=909;DPB=909;DPRA=0;EPP=22.6469;EPPR=651.943;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.634409;PAIREDR=0.349383;PAO=0;PQA=0;PQR=0;PRO=0;QA=3539;QR=31655;RO=810;RPL=0;RPP=204.957;RPPR=1600.74;RPR=93;RUN=1;SAF=61;SAP=22.6469;SAR=32;SRF=670;SRP=756.055;SRR=140;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:269:256,12:256:10060:12:471:0,-38.3027,-862.078 0/1:212:185,22:185:7309:22:861:-15.1035,0,-594.795 0/1:240:214,26:214:8308:26:976:-15.8876,0,-675.109 0/1:188:155,33:155:5978:33:1231:-54.4752,0,-481.291 dDocent_Contig_9185 10 . A T 544.347 . AB=0.0503145;ABP=282.284;AC=0;AF=0;AN=8;AO=8;CIGAR=1X2M1X2M1X;DP=267;DPB=267;DPRA=3.45652;EPP=20.3821;EPPR=426.447;GTI=0;LEN=1;MEANALT=6;MQM=60;MQMR=57.8615;NS=4;NUMALT=4;ODDS=0;PAIRED=0;PAIREDR=0.251282;PAO=0;PQA=0;PQR=0;PRO=0;QA=316;QR=7610;RO=195;RPL=0;RPP=20.3821;RPPR=426.447;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=195;SRP=426.447;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:80:55,1,4,17,3:55:2151:1,4,17,3:40,121,638,117:-35.6487,-48.9089,-222.804,-42.538,-213.429,-215.52,0,-170.919,-164.54,-169.097,-42.5863,-213.488,-207.108,-164.598,-215.881 0|0:85:70,0,0,9,5:70:2737:0,0,9,5:0,0,341,205:-6.84888,-27.921,-249.325,-27.921,-249.325,-249.325,0,-221.389,-221.389,-218.68,-10.9904,-232.403,-232.403,-204.467,-230.898 0|0:79:47,7,1,10,6:47:1828:7,1,10,6:276,27,384,242:-17.335,-8.77257,-146.262,-29.3584,-146.242,-168.652,0,-116.883,-137.467,-136.584,-11.531,-128.418,-149.002,-119.643,-149.323 0|0:23:23,0,0,0,0:23:894:0,0,0,0:0,0,0,0:0,-6.92369,-80.7754,-6.92369,-80.7754,-80.7754,-6.92369,-80.7754,-80.7754,-80.7754,-6.92369,-80.7754,-80.7754,-80.7754,-80.7754 dDocent_Contig_9186 80 . T C 582.591 . AB=0.260504;ABP=62.297;AC=3;AF=0.375;AN=8;AO=34;CIGAR=1X;DP=161;DPB=161;DPRA=0;EPP=76.8404;EPPR=278.787;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=0.992126;PAO=0;PQA=0;PQR=0;PRO=0;QA=1202;QR=4497;RO=127;RPL=34;RPP=76.8404;RPPR=278.787;RPR=0;RUN=1;SAF=34;SAP=76.8404;SAR=0;SRF=127;SRP=278.787;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:42:39,3:39:1392:3:108:0,-2.56809,-115.505 0/1:67:48,19:48:1691:19:667:-40.1858,0,-132.306 0/1:21:16,5:16:570:5:179:-10.1388,0,-45.3114 0/1:31:24,7:24:844:7:248:-13.3325,0,-66.947 dDocent_Contig_9187 98 . N T 549.03 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=16;CIGAR=1X;DP=16;DPB=16;DPRA=0;EPP=37.7539;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=58.5;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=592;QR=0;RO=0;RPL=16;RPP=37.7539;RPPR=0;RPR=0;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:4:0,4:0:0:4:148:-13.6246,-1.20412,0 1/1:10:0,10:0:0:10:370:-33.6501,-3.0103,0 1/1:2:0,2:0:0:2:74:-7.02588,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_9188 15 . T C 747.619 . AB=0.279279;ABP=49.9806;AC=3;AF=0.375;AN=8;AO=33;CIGAR=1X;DP=145;DPB=145;DPRA=0;EPP=74.6689;EPPR=246.215;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.9464;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=0.242424;PAIREDR=0.607143;PAO=0;PQA=0;PQR=0;PRO=0;QA=1331;QR=4418;RO=112;RPL=0;RPP=74.6689;RPPR=246.215;RPR=33;RUN=1;SAF=33;SAP=74.6689;SAR=0;SRF=112;SRP=246.215;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:32:28,4:28:1099:4:163:-5.42547,0,-89.561 0/1:44:21,23:21:822:23:928:-70.5782,0,-61.0464 0/0:34:32,2:32:1252:2:81:0,-2.54929,-105.268 0/1:35:31,4:31:1245:4:159:-4.15539,0,-101.782 dDocent_Contig_9190 138 . T C 140.262 . AB=0.25;ABP=20.3821;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X;DP=76;DPB=76;DPRA=3.75;EPP=22.5536;EPPR=148.499;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=313;QR=2311;RO=67;RPL=0;RPP=22.5536;RPPR=148.499;RPR=9;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=148.499;SRR=67;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:13:13,0:13:434:0:0:0,-3.91339,-39.3766 0/0:28:27,1:27:937:1:35:0,-4.93021,-81.1397 0/1:32:24,8:24:833:8:278:-15.725,0,-65.6526 0/0:3:3,0:3:107:0:0:0,-0.90309,-9.98217 dDocent_Contig_9191 7 . C T 224.409 . AB=0.166667;ABP=84.0786;AC=1;AF=0.125;AN=8;AO=14;CIGAR=1X;DP=198;DPB=198;DPRA=2.21053;EPP=33.4109;EPPR=400.39;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=542;QR=7028;RO=183;RPL=0;RPP=33.4109;RPPR=400.39;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=183;SRP=400.39;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:84:70,14:70:2679:14:542:-23.8389,0,-216.014 0/0:49:49,0:49:1889:0:0:0,-14.7505,-170.253 0/0:43:43,0:43:1654:0:0:0,-12.9443,-149.121 0/0:22:21,0:21:806:0:0:0,-6.32163,-72.6944 dDocent_Contig_9192 98 . N A 748.716 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=24;CIGAR=1X;DP=24;DPB=24;DPRA=0;EPP=55.1256;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=1.69407e-21;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=814;QR=0;RO=0;RPL=24;RPP=55.1256;RPPR=0;RPR=0;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:21:0,21:0:0:21:709:-64.1227,-6.32163,0 1/1:1:0,1:0:0:1:35:-3.49863,-0.30103,0 ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:70:-6.64733,-0.60206,0 dDocent_Contig_9193 98 . N T 88.6475 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=95;QR=0;RO=0;RPL=3;RPP=9.52472;RPPR=0;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:95:-8.86421,-0.90309,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_9194 12 . G C 7545.22 . AB=0.710059;ABP=132.553;AC=4;AF=0.5;AN=8;AO=240;CIGAR=1X;DP=338;DPB=338;DPRA=0;EPP=524.164;EPPR=204.957;GTI=0;LEN=1;MEANALT=1.75;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=9586;QR=3711;RO=93;RPL=0;RPP=524.164;RPPR=204.957;RPR=240;RUN=1;SAF=240;SAP=524.164;SAR=0;SRF=93;SRP=204.957;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:81:21,59:21:844:59:2335:-185.847,0,-51.816 0/1:125:12,111:12:447:111:4425:-360.759,0,-3.13803 0/1:99:46,51:46:1852:51:2048:-154.904,0,-137.283 0/1:33:14,19:14:568:19:778:-60.403,0,-41.5286 dDocent_Contig_9195 112 . G A 1946.77 . AB=0.618321;ABP=18.94;AC=4;AF=0.5;AN=8;AO=81;CIGAR=1X2M1X;DP=131;DPB=131;DPRA=0;EPP=178.9;EPPR=103.072;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.98;PAO=0;PQA=0;PQR=0;PRO=0;QA=2670;QR=1683;RO=50;RPL=0;RPP=178.9;RPPR=111.584;RPR=81;RUN=1;SAF=0;SAP=178.9;SAR=81;SRF=1;SRP=103.072;SRR=49;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:35:10,25:10:345:25:838:-65.1927,0,-20.8475 0|1:56:24,32:24:791:32:1079:-80.5572,0,-54.6378 0|1:33:13,20:13:444:20:633:-47.3354,0,-30.3537 0|1:7:3,4:3:103:4:120:-8.98949,0,-7.50276 dDocent_Contig_9196 94 . A G 41.9354 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X3M4X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=15;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=112;QR=0;RO=0;RPL=3;RPP=9.52472;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:3:0,3:0:0:3:112:-4.19297,-0.90309,0 .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. dDocent_Contig_9197 9 . A G 61.1206 . AB=0.16129;ABP=33.9012;AC=2;AF=0.25;AN=8;AO=5;CIGAR=1X;DP=83;DPB=83;DPRA=0.596154;EPP=13.8677;EPPR=172.385;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.987179;PAO=0;PQA=0;PQR=0;PRO=0;QA=195;QR=2973;RO=78;RPL=0;RPP=13.8677;RPPR=172.385;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=78;SRP=172.385;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:30:30,0:30:1130:0:0:0,-9.0309,-101.995 0/1:22:18,4:18:687:4:156:-7.79463,0,-55.5407 0/0:22:22,0:22:846:0:0:0,-6.62266,-76.4633 0/1:9:8,1:8:310:1:39:-1.18729,0,-25.5544 dDocent_Contig_9198 12 . C T 632.618 . AB=0.247788;ABP=65.4449;AC=4;AF=0.5;AN=8;AO=28;CIGAR=1X1M;DP=113;DPB=113;DPRA=0;EPP=63.8115;EPPR=181.071;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=6.93889e-18;PAIRED=0.571429;PAIREDR=0.829268;PAO=0;PQA=0;PQR=0;PRO=0;QA=1140;QR=3226;RO=82;RPL=0;RPP=63.8115;RPPR=181.071;RPR=28;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=82;SRP=181.071;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:35:24,0,11:24:953:0,11:0,447:-30.05,-37.2747,-115.718,0,-78.8464,-75.5351 0|1:38:28,0,10:28:1117:0,10:0,408:-25.6414,-34.0703,-126.05,0,-92.3848,-89.3745 0|1:27:23,0,4:23:899:0,4:0,163:-6.93062,-13.8543,-87.7407,0,-74.291,-73.0868 0|1:13:7,3,3:7:257:3,3:121,122:-7.95768,-0.0925071,-20.1638,0,-10.9918,-20.0736 dDocent_Contig_9199 16 . C T 59.9894 . AB=0.130435;ABP=30.2953;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X2M1X3M5I2M2X;DP=52;DPB=56.0909;DPRA=8.33333;EPP=22.5536;EPPR=70.3259;GTI=0;LEN=1;MEANALT=3;MQM=11;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=357;QR=1226;RO=31;RPL=0;RPP=22.5536;RPPR=70.3259;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:23:10,6,2,3:10:397:6,2,3:236,74,117:-7.3953,0,-31.0141,-7.78194,-30.2105,-39.9592,-8.36506,-30.796,-38.5262,-40.235 0|0:14:9,0,0,4:9:354:0,0,4:0,0,160:0,-2.70927,-31.9763,-2.70927,-31.9763,-31.9763,-0.16693,-29.3026,-29.3026,-28.0985 0|0:13:10,0,0,2:10:395:0,0,2:0,0,80:0,-3.0103,-35.6554,-3.0103,-35.6554,-35.6554,-1.83294,-34.3223,-34.3223,-33.7203 0|0:2:2,0,0,0:2:80:0,0,0:0,0,0:0,-0.60206,-7.59179,-0.60206,-7.59179,-7.59179,-0.60206,-7.59179,-7.59179,-7.59179 dDocent_Contig_9200 47 . A C 122.838 . AB=0.357143;ABP=5.49198;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=37;DPB=37;DPRA=1.82609;EPP=13.8677;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=198;QR=1282;RO=32;RPL=0;RPP=13.8677;RPPR=72.4974;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:6:6,0:6:243:0:0:0,-1.80618,-22.248 0/0:8:8,0:8:326:0:0:0,-2.40824,-29.7099 0/1:14:9,5:9:357:5:198:-13.9827,0,-28.277 0/0:9:9,0:9:356:0:0:0,-2.70927,-32.4008 dDocent_Contig_9201 98 . N T 65.5375 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=69;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:69:-6.55266,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_9203 9 . A G 437.375 . AB=0.25;ABP=50.7827;AC=4;AF=0.5;AN=8;AO=22;CIGAR=1X;DP=88;DPB=88;DPRA=0;EPP=50.7827;EPPR=146.327;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=843;QR=2521;RO=66;RPL=0;RPP=50.7827;RPPR=146.327;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=66;SRP=146.327;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:42:38,4:38:1435:4:156:-1.77403,0,-116.786 0/1:25:14,11:14:544:11:422:-30.8073,0,-41.7805 0/1:14:11,3:11:427:3:115:-6.51047,0,-34.5707 0/1:7:3,4:3:115:4:150:-11.7575,0,-8.61768 dDocent_Contig_9204 98 . N T 308.926 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=9;CIGAR=3X;DP=9;DPB=11;DPRA=0;EPP=22.5536;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=1;PQA=38;PQR=0;PRO=0;QA=330;QR=0;RO=0;RPL=9;RPP=22.5536;RPPR=0;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. 1|1:1:0,1:0:0:1:37:-3.69783,-0.30103,0 1|1:7:0,7:0:0:7:256:-23.393,-2.10721,0 1|1:1:0,1:0:0:1:37:-3.32307,-0.30103,0 dDocent_Contig_9205 165 . T C 309.137 . AB=0.454545;ABP=3.40511;AC=4;AF=0.5;AN=8;AO=12;CIGAR=1X;DP=32;DPB=32;DPRA=0;EPP=29.068;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=468;QR=787;RO=20;RPL=12;RPP=29.068;RPPR=46.4397;RPR=0;RUN=1;SAF=0;SAP=29.068;SAR=12;SRF=0;SRP=46.4397;SRR=20;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:7,7:7:285:7:280:-21.3571,0,-21.81 0/1:8:5,3:5:188:3:123:-9.05655,0,-14.8723 0/0:9:8,1:8:314:1:26:0,-0.109442,-26.0241 1/1:1:0,1:0:0:1:39:-3.89656,-0.30103,0 dDocent_Contig_9206 45 . C A 36.3568 . AB=0.121212;ABP=44.1367;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=79;DPB=79;DPRA=2.15217;EPP=11.6962;EPPR=90.593;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=162;QR=2948;RO=75;RPL=0;RPP=11.6962;RPPR=90.593;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=75;SRP=165.871;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:33:29,4:29:1135:4:162:-5.03297,0,-92.5073 0/0:21:21,0:21:844:0:0:0,-6.32163,-76.2752 0/0:24:24,0:24:928:0:0:0,-7.22472,-83.8258 0/0:1:1,0:1:41:0:0:0,-0.30103,-4.09457 dDocent_Contig_9207 7 . C T 1056.15 . AB=0.215686;ABP=182.05;AC=4;AF=0.5;AN=8;AO=55;CIGAR=1X;DP=255;DPB=255;DPRA=0;EPP=122.441;EPPR=437.305;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.909091;PAIREDR=0.495;PAO=0;PQA=0;PQR=0;PRO=0;QA=2085;QR=7694;RO=200;RPL=0;RPP=122.441;RPPR=437.305;RPR=55;RUN=1;SAF=55;SAP=122.441;SAR=0;SRF=200;SRP=437.305;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:117:91,26:91:3507:26:977:-53.0214,0,-280.533 0/1:78:71,7:71:2722:7:271:-1.2761,0,-221.685 0/1:43:31,12:31:1200:12:455:-28.3541,0,-95.3515 0/1:17:7,10:7:265:10:382:-29.6174,0,-19.0926 dDocent_Contig_9208 152 . G T 599.63 . AB=0;ABP=0;AC=2;AF=0.25;AN=8;AO=19;CIGAR=1X;DP=47;DPB=47;DPRA=2.03571;EPP=44.2683;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=656;QR=976;RO=28;RPL=0;RPP=44.2683;RPPR=63.8115;RPR=19;RUN=1;SAF=0;SAP=44.2683;SAR=19;SRF=0;SRP=63.8115;SRR=28;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:19:0,19:0:0:19:656:-59.3609,-5.71957,0 0/0:13:13,0:13:454:0:0:0,-3.91339,-41.1914 0/0:10:10,0:10:352:0:0:0,-3.0103,-32.0186 0/0:5:5,0:5:170:0:0:0,-1.50515,-15.6344 dDocent_Contig_9209 7 . C T 1543.98 . AB=0.439394;ABP=7.22164;AC=4;AF=0.5;AN=8;AO=58;CIGAR=2X1M1X;DP=132;DPB=132;DPRA=0;EPP=128.956;EPPR=163.699;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.948276;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2224;QR=2835;RO=74;RPL=0;RPP=128.956;RPPR=163.699;RPR=58;RUN=1;SAF=58;SAP=128.956;SAR=0;SRF=74;SRP=163.699;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:37:25,12:25:961:12:458:-30.4315,0,-75.6664 0|1:48:32,16:32:1231:16:612:-40.9696,0,-96.6358 0|1:31:14,17:14:528:17:658:-50.2254,0,-38.528 0|1:16:3,13:3:115:13:496:-40.1694,0,-5.90841 dDocent_Contig_9210 52 . G A 393.146 . AB=0.256757;ABP=41.0404;AC=4;AF=0.5;AN=8;AO=19;CIGAR=1X;DP=74;DPB=74;DPRA=0;EPP=44.2683;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.927273;PAO=0;PQA=0;PQR=0;PRO=0;QA=737;QR=2173;RO=55;RPL=19;RPP=44.2683;RPPR=122.441;RPR=0;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:21,2:21:836:2:82:-0.855988,0,-68.6295 0/1:20:11,9:11:438:9:344:-25.2907,0,-33.755 0/1:24:18,6:18:702:6:230:-13.8356,0,-56.2792 0/1:7:5,2:5:197:2:81:-5.57852,0,-15.9983 dDocent_Contig_9212 60 . C A 80.0923 . AB=0.157895;ABP=41.6397;AC=2;AF=0.25;AN=8;AO=6;CIGAR=1X;DP=49;DPB=49;DPRA=3.45455;EPP=16.0391;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.166667;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=235;QR=1724;RO=43;RPL=6;RPP=16.0391;RPPR=96.3836;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:6:6,0:6:227:0:0:0,-1.80618,-20.7868 0/1:11:10,1:10:405:1:41:-0.783237,0,-33.4987 0/1:27:22,5:22:889:5:194:-9.70161,0,-72.1893 0/0:5:5,0:5:203:0:0:0,-1.50515,-18.6528 dDocent_Contig_9213 13 . T A 4055.08 . AB=0.480287;ABP=3.95205;AC=5;AF=0.625;AN=8;AO=134;CIGAR=1M1X6M1X;DP=279;DPB=279;DPRA=0;EPP=293.988;EPPR=246.215;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5167;QR=4354;RO=112;RPL=0;RPP=293.988;RPPR=246.215;RPR=134;RUN=1;SAF=134;SAP=293.988;SAR=0;SRF=112;SRP=246.215;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:102:43,0,59:43:1681:0,59:0,2223:-169.551,-182.495,-320.704,0,-138.593,-120.832 0|1:73:33,8,32:33:1286:8,32:296,1257:-93.4669,-79.1944,-182.477,0,-81.5015,-96.0757 0|1:79:32,13,33:32:1229:13,33:506,1292:-96.6055,-64.6547,-161.615,0,-59.2917,-90.9435 1|1:25:4,11,10:4:158:11,10:426,395:-53.2828,-19.4985,-29.1891,-21.9827,0,-31.9764 dDocent_Contig_9214 170 . A G 432.532 . AB=0.23913;ABP=57.3915;AC=4;AF=0.5;AN=8;AO=22;CIGAR=1X;DP=92;DPB=92;DPRA=0;EPP=50.7827;EPPR=155.013;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=854;QR=2772;RO=70;RPL=22;RPP=50.7827;RPPR=155.013;RPR=0;RUN=1;SAF=0;SAP=50.7827;SAR=22;SRF=0;SRP=155.013;SRR=70;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:5:3,2:3:122:2:80:-6.08642,0,-9.86734 0/1:32:28,4:28:1116:4:163:-5.42547,0,-91.0876 0/1:43:29,14:29:1139:14:536:-35.6286,0,-89.8439 0/1:12:10,2:10:395:2:75:-3.50723,0,-32.2941 dDocent_Contig_9215 19 . T A 1831.83 . AB=0.648936;ABP=21.1213;AC=4;AF=0.5;AN=8;AO=61;CIGAR=1X;DP=94;DPB=94;DPRA=0;EPP=135.47;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.918033;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2417;QR=1289;RO=33;RPL=0;RPP=135.47;RPPR=74.6689;RPR=61;RUN=1;SAF=61;SAP=135.47;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:6,15:6:241:15:587:-46.8457,0,-15.745 0/1:35:14,21:14:564:21:844:-65.7375,0,-40.5675 0/1:24:8,16:8:301:16:631:-49.8999,0,-20.2139 0/1:14:5,9:5:183:9:355:-28.0981,0,-12.6109 dDocent_Contig_9216 31 . C T 431.389 . AB=0.305085;ABP=22.4799;AC=3;AF=0.375;AN=8;AO=20;CIGAR=1X;DP=89;DPB=89;DPRA=0;EPP=46.4397;EPPR=152.842;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.85;PAIREDR=0.884058;PAO=0;PQA=0;PQR=0;PRO=0;QA=794;QR=2737;RO=69;RPL=0;RPP=46.4397;RPPR=152.842;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=69;SRP=152.842;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:30:28,2:28:1124:2:70:0,-2.38468,-94.7963 0/1:15:13,2:13:510:2:81:-3.17028,0,-41.7298 0/1:18:10,8:10:376:8:320:-23.7486,0,-28.7634 0/1:26:18,8:18:727:8:323:-21.6107,0,-57.9281 dDocent_Contig_9217 1 . N G 62.6926 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=66;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:66:-6.26818,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_9218 108 . T A 119.538 . AB=0.16;ABP=78.317;AC=1;AF=0.125;AN=8;AO=12;CIGAR=1X;DP=181;DPB=181;DPRA=2.12264;EPP=29.068;EPPR=369.989;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=399;QR=5624;RO=169;RPL=0;RPP=29.068;RPPR=369.989;RPR=12;RUN=1;SAF=0;SAP=29.068;SAR=12;SRF=0;SRP=369.989;SRR=169;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:40:40,0:40:1338:0:0:0,-12.0412,-120.712 0/0:48:48,0:48:1577:0:0:0,-14.4494,-142.211 0/1:75:63,12:63:2105:12:399:-13.6528,0,-167.142 0/0:18:18,0:18:604:0:0:0,-5.41854,-54.6761 dDocent_Contig_9219 181 . T C 68.7251 . AB=0.333333;ABP=5.18177;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=44;DPB=44;DPRA=0.771429;EPP=9.52472;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=121;QR=1653;RO=41;RPL=3;RPP=9.52472;RPPR=92.0407;RPR=0;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=92.0407;SRR=41;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:1:1,0:1:41:0:0:0,-0.30103,-4.09457 0/0:24:24,0:24:973:0:0:0,-7.22472,-87.8674 0/0:10:10,0:10:397:0:0:0,-3.0103,-36.087 0/1:9:6,3:6:242:3:121:-8.57093,0,-19.4483 dDocent_Contig_9220 89 . T C 58.2742 . AB=0.222222;ABP=15.074;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=56;DPB=56;DPRA=1.42105;EPP=11.6962;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=140;QR=1783;RO=52;RPL=4;RPP=11.6962;RPPR=115.927;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:9:9,0:9:313:0:0:0,-2.70927,-28.5071 0/1:18:14,4:14:484:4:140:-7.52639,0,-38.4711 0/0:16:16,0:16:533:0:0:0,-4.81648,-48.2874 0/0:13:13,0:13:453:0:0:0,-3.91339,-41.1028 dDocent_Contig_9221 37 . G A 289.719 . AB=0.315789;ABP=14.2105;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X;DP=51;DPB=51;DPRA=1.46154;EPP=29.068;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=478;QR=1537;RO=39;RPL=0;RPP=29.068;RPPR=87.6977;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:13:13,0:13:492:0:0:0,-3.91339,-44.6178 0/1:30:19,11:19:760:11:438:-30.7431,0,-59.6938 0/1:8:7,1:7:285:1:40:-1.58744,0,-23.6162 ./.:.:.:.:.:.:.:. dDocent_Contig_9224 35 . T A 661.254 . AB=0.191176;ABP=59.3408;AC=1;AF=0.125;AN=8;AO=14;CIGAR=9M1X5M;DP=216;DPB=218.667;DPRA=0;EPP=33.4109;EPPR=307.016;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=4;NUMALT=6;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=552;QR=5484;RO=140;RPL=0;RPP=33.4109;RPPR=307.016;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=140;SRP=307.016;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:79:64,0,10,0,4,0,0:64:2501:0,10,0,4,0,0:0,387,0,148,0,0:-12.5255,-31.7914,-237.403,0,-205.618,-202.607,-31.7914,-237.403,-205.618,-237.403,-19.6921,-225.299,-193.515,-225.299,-224.095,-31.7914,-237.403,-205.618,-237.403,-225.299,-237.403,-31.7914,-237.403,-205.618,-237.403,-225.299,-237.403,-237.403 0|1:68:29,0,8,4,0,13,13:29:1138:0,8,4,0,13,13:0,317,157,0,508,511:-33.3016,-42.0315,-135.626,-15.9376,-109.534,-107.126,-29.1184,-122.714,-96.6215,-121.51,-42.0315,-135.626,-109.534,-122.714,-135.626,-0.273484,-93.8705,-67.7781,-80.9578,-93.8705,-89.9571,0,-93.5976,-67.5051,-80.6849,-93.5976,-51.8414,-89.6842 0|0:39:21,2,5,1,0,10,0:21:832:2,5,1,0,10,0:79,192,38,0,389,0:-25.6419,-25.462,-93.3478,-16.2072,-78.1933,-83.1888,-28.8475,-90.8336,-81.5779,-97.0333,-31.9635,-93.9498,-84.694,-97.3344,-100.451,0,-61.989,-52.7338,-65.3736,-68.4897,-65.4794,-31.9635,-93.9498,-84.694,-97.3344,-100.451,-68.4897,-100.451 0|0:30:26,0,1,0,0,2,1:26:1013:0,1,0,0,2,1:0,37,0,0,82,41:0,-7.82678,-91.0748,-4.80968,-88.0485,-87.7475,-7.82678,-91.0748,-88.0485,-91.0748,-7.82678,-91.0748,-88.0485,-91.0748,-91.0748,-1.0487,-84.3053,-81.279,-84.3053,-84.3053,-83.7033,-4.43939,-87.6901,-84.6638,-87.6901,-87.6901,-80.9205,-87.3891 dDocent_Contig_9225 41 . G T 62.3165 . AB=0.118644;ABP=77.5396;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=195;DPB=195;DPRA=1.30147;EPP=18.2106;EPPR=342.561;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=51.5668;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.352941;PAO=0;PQA=0;PQR=0;PRO=0;QA=278;QR=7420;RO=187;RPL=0;RPP=18.2106;RPPR=400.436;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=180;SRP=350.55;SRR=7;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:59:52,7:52:2043:7:278:-7.62959,0,-155.864 0/0:38:38,0:38:1530:0:0:0,-11.4391,-134.076 0/0:46:46,0:46:1818:0:0:0,-13.8474,-140.45 0/0:52:51,0:51:2029:0:0:0,-15.3525,-150.531 dDocent_Contig_9226 35 . C T 647.401 . AB=0.285714;ABP=42.0968;AC=3;AF=0.375;AN=8;AO=28;CIGAR=1X;DP=112;DPB=112;DPRA=2.33333;EPP=63.8115;EPPR=185.414;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1095;QR=3384;RO=84;RPL=0;RPP=63.8115;RPPR=185.414;RPR=28;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=84;SRP=185.414;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:57:40,17:40:1622:17:661:-42.6663,0,-129.047 0/1:35:27,8:27:1075:8:313:-17.9977,0,-86.5021 0/0:14:14,0:14:567:0:0:0,-4.21442,-51.3723 0/1:6:3,3:3:120:3:121:-9.47402,0,-9.38172 dDocent_Contig_9227 8 . A G 313.802 . AB=0.184466;ABP=92.0828;AC=2;AF=0.25;AN=8;AO=22;CIGAR=1X;DP=183;DPB=183;DPRA=0;EPP=50.7827;EPPR=352.617;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.913043;PAO=0;PQA=0;PQR=0;PRO=0;QA=840;QR=6154;RO=161;RPL=0;RPP=50.7827;RPPR=352.617;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=161;SRP=352.617;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:53:47,6:47:1800:6:232:-5.29434,0,-146.299 0/1:50:37,13:37:1420:13:491:-29.4837,0,-113.029 0/0:57:55,2:55:2096:2:78:0,-9.75524,-181.469 0/0:23:22,1:22:838:1:39:0,-3.02713,-71.845 dDocent_Contig_9228 11 . T C 506.369 . AB=0.261905;ABP=44.3717;AC=3;AF=0.375;AN=8;AO=23;CIGAR=1X2M1X;DP=97;DPB=97;DPRA=0;EPP=52.9542;EPPR=139.813;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=1.38778e-17;PAIRED=0;PAIREDR=0.825397;PAO=0;PQA=0;PQR=0;PRO=0;QA=896;QR=2441;RO=63;RPL=0;RPP=52.9542;RPPR=139.813;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=63;SRP=139.813;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:37:21,8,8:21:806:8,8:314,303:-19.5098,0,-63.7431,-0.999772,-41.3142,-64.733 0|1:29:20,6,3:20:780:6,3:233,115:-13.1268,0,-62.3114,-9.71065,-54.68,-72.9206 0|0:13:12,1,0:12:463:1,0:33,0:0,-0.614255,-38.7191,-3.61236,-39.0202,-41.6841 0|1:18:10,8,0:10:392:8,0:316,0:-23.3873,0,-30.22,-26.3976,-32.6282,-58.6325 dDocent_Contig_9229 51 . A G 384.202 . AB=0.0967742;ABP=309.468;AC=4;AF=0.5;AN=8;AO=21;CIGAR=1X2M;DP=217;DPB=217;DPRA=0;EPP=48.6112;EPPR=365.646;GTI=0;LEN=1;MEANALT=2.5;MQM=57.5238;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.952381;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=804;QR=6393;RO=167;RPL=21;RPP=48.6112;RPPR=365.646;RPR=0;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=167;SRP=365.646;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:81:69,7,2:69:2657:7,2:270,78:-1.39674,0,-216.021,-15.756,-211.717,-233.288 0|1:75:59,7,9:59:2273:7,9:267,330:-8.94759,-4.79656,-189.332,0,-164.724,-183.918 0|1:39:25,9,4:25:924:9,4:325,153:-18.9802,0,-72.8414,-13.9481,-62.996,-88.3125 0|1:22:14,2,6:14:539:2,6:70,243:-15.8641,-14.3973,-58.0326,0,-38.5912,-42.4755 dDocent_Contig_9230 93 . A G 170.128 . AB=0.227273;ABP=31.4368;AC=1;AF=0.125;AN=8;AO=10;CIGAR=1X;DP=133;DPB=133;DPRA=1.48315;EPP=24.725;EPPR=270.101;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=348;QR=4214;RO=123;RPL=10;RPP=24.725;RPPR=270.101;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=123;SRP=270.101;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:44:34,10:34:1185:10:348:-18.4107,0,-93.7124 0/0:72:72,0:72:2464:0:0:0,-21.6742,-222.021 0/0:9:9,0:9:295:0:0:0,-2.70927,-26.8685 0/0:8:8,0:8:270:0:0:0,-2.40824,-24.6286 dDocent_Contig_9231 9 . A G 38.6366 . AB=0.133333;ABP=38.0434;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=61;DPB=61;DPRA=1.67857;EPP=13.8677;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=195;QR=2143;RO=56;RPL=0;RPP=13.8677;RPPR=124.613;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:26,4:26:990:4:156:-5.38639,0,-80.3804 0/0:17:16,1:16:612:1:39:0,-1.22095,-51.5223 0/0:14:14,0:14:541:0:0:0,-4.21442,-49.0353 ./.:.:.:.:.:.:.:. dDocent_Contig_9232 44 . C T 1760.6 . AB=0.0132743;ABP=468.051;AC=0;AF=0;AN=8;AO=3;CIGAR=1M1I8M5I1X2M2X2M1X8M;DP=454;DPB=569.96;DPRA=0;EPP=9.52472;EPPR=194.1;GTI=0;LEN=1;MEANALT=26;MQM=49.6667;MQMR=60;NS=4;NUMALT=5;ODDS=0;PAIRED=1;PAIREDR=0.977273;PAO=0;PQA=0;PQR=0;PRO=0;QA=103;QR=3395;RO=88;RPL=0;RPP=9.52472;RPPR=194.1;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=88;SRP=194.1;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:211:39,12,15,1,2,34:39:1518:12,15,1,2,34:469,495,39,72,1204:-86.3214,-59.5012,-180.653,-60.4819,-146.686,-180.73,-94.8554,-181.059,-182.039,-219.317,-92.1865,-178.391,-179.37,-213.743,-216.347,0,-86.2062,-87.1869,-121.56,-118.891,-114.531 0|0:166:32,15,9,0,1,25:32:1219:15,9,0,1,25:595,241,0,40,924:-65.9538,-26.5985,-122.08,-58.4984,-109.506,-155.782,-75.5868,-126.595,-158.492,-175.581,-72.2912,-123.3,-155.196,-172.285,-171.984,0,-51.0103,-82.9092,-99.9976,-96.7021,-92.4719 0|0:62:14,8,4,0,0,11:14:540:8,4,0,0,11:306,128,0,0,368:-25.571,-4.73756,-46.681,-20.5582,-39.8617,-63.7021,-29.7855,-49.0893,-64.9062,-74.1343,-29.7855,-49.0893,-64.9062,-74.1343,-74.1343,0,-19.3044,-35.1229,-44.3494,-44.3494,-41.0381 0|0:15:3,1,0,2,2,0:3:118:1,0,2,2,0:40,0,64,79,0:-5.60863,-3.2113,-12.6294,-6.51172,-12.9305,-16.229,-1.63288,-8.05158,-11.3501,-10.748,0,-6.42169,-9.72135,-4.84254,-9.11929,-6.51172,-12.9305,-16.229,-11.3501,-9.72135,-16.229 dDocent_Contig_9233 40 . G T 597.658 . AB=0.315789;ABP=25.4108;AC=3;AF=0.375;AN=8;AO=25;CIGAR=3M1D1M1X2M;DP=101;DPB=94.875;DPRA=0;EPP=57.2971;EPPR=150.67;GTI=0;LEN=1;MEANALT=1.75;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=990;QR=2673;RO=68;RPL=0;RPP=57.2971;RPPR=150.67;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=68;SRP=150.67;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:32:13,16,3:13:517:16,3:634,114:-48.2808,0,-37.7652,-42.8477,-33.2359,-84.5126 0|1:37:26,7,4:26:1017:7,4:275,159:-14.7886,0,-81.5015,-9.52293,-70.5171,-91.9316 0|0:25:23,1,1:23:906:1,1:40,34:0,-3.59877,-77.884,-4.19554,-75.4293,-78.4236 0|1:7:6,1,0:6:233:1,0:41,0:-1.98736,0,-19.2317,-3.79354,-19.5327,-22.9199 dDocent_Contig_9234 128 . C T 266.194 . AB=0.138728;ABP=199.133;AC=2;AF=0.25;AN=8;AO=28;CIGAR=1X;DP=307;DPB=307;DPRA=0;EPP=55.4358;EPPR=7.87471;GTI=0;LEN=1;MEANALT=1;MQM=57.8214;MQMR=47.4337;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=0;PAIREDR=0.225806;PAO=0;PQA=0;PQR=0;PRO=0;QA=1051;QR=10352;RO=279;RPL=0;RPP=63.8115;RPPR=608.851;RPR=28;RUN=1;SAF=1;SAP=55.4358;SAR=27;SRF=152;SRP=7.87471;SRR=127;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:89:75,14:75:2746:14:530:-21.0342,0,-202.525 0/1:84:74,10:74:2736:10:377:-8.98317,0,-193.629 0/0:101:98,3:98:3645:3:110:0,-20.1724,-247.671 0/0:33:32,1:32:1225:1:34:0,-6.53508,-88.3496 dDocent_Contig_9235 7 . C T 1237.89 . AB=0.326667;ABP=42.1547;AC=4;AF=0.5;AN=8;AO=49;CIGAR=1X3M;DP=150;DPB=150;DPRA=0;EPP=109.412;EPPR=181.071;GTI=0;LEN=1;MEANALT=1.75;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.693878;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1893;QR=3147;RO=82;RPL=0;RPP=109.412;RPPR=181.071;RPR=49;RUN=1;SAF=49;SAP=109.412;SAR=0;SRF=82;SRP=181.071;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:45:27,5,13:27:1034:5,13:187,501:-33.0198,-25.8388,-109.19,0,-69.5552,-80.9524 0|1:61:37,5,19:37:1420:5,19:195,736:-49.3244,-44.4326,-159.484,0,-100.524,-110.834 0|1:33:12,9,12:12:464:9,12:344,463:-34.4127,-9.79995,-45.204,0,-9.8907,-34.5031 0|1:11:6,0,5:6:229:0,5:0,193:-14.43,-16.2362,-35.0212,0,-19.1687,-17.6636 dDocent_Contig_9236 80 . A G 40.7209 . AB=0.666667;ABP=3.73412;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X;DP=77;DPB=77;DPRA=0.121622;EPP=7.35324;EPPR=165.871;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=4.33681e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=70;QR=2617;RO=75;RPL=2;RPP=7.35324;RPPR=165.871;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=75;SRP=165.871;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:30:30,0:30:1049:0:0:0,-9.0309,-94.7215 0/0:26:26,0:26:901:0:0:0,-7.82678,-81.404 0/0:18:18,0:18:632:0:0:0,-5.41854,-57.2077 0/1:3:1,2:1:35:2:70:-5.74431,0,-2.59554 dDocent_Contig_9237 11 . G A 369.646 . AB=0.230769;ABP=52.119;AC=3;AF=0.375;AN=8;AO=18;CIGAR=2X;DP=100;DPB=100;DPRA=1.18182;EPP=42.0968;EPPR=181.071;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=719;QR=3195;RO=82;RPL=0;RPP=42.0968;RPPR=181.071;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=82;SRP=181.071;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:37:25,12:25:977:12:476:-32.0538,0,-77.0862 0|0:22:22,0:22:883:0:0:0,-6.62266,-79.7796 0|1:36:32,4:32:1222:4:163:-4.22135,0,-99.4209 0|1:5:3,2:3:113:2:80:-6.08664,0,-9.03264 dDocent_Contig_9240 17 . G A 7484.72 . AB=0.0692771;ABP=538.004;AC=0;AF=0;AN=8;AO=23;CIGAR=1X1M1X2M;DP=384;DPB=384;DPRA=0;EPP=52.9542;EPPR=133.299;GTI=0;LEN=1;MEANALT=4.33333;MQM=40;MQMR=59.25;NS=4;NUMALT=5;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=912;QR=2340;RO=60;RPL=0;RPP=52.9542;RPPR=133.299;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:181:10,8,14,1,132,16:10:381:8,14,1,132,16:320,551,40,5195,637:-411.421,-390.207,-419.048,-372.497,-379.522,-399.532,-411.403,-418.428,-400.719,-442.352,-19.8134,-26.8402,-9.13318,-48.0354,-11.3274,-363.371,-370.397,-352.687,-391.593,0,-389.805 0|0:126:36,14,2,7,66,1:36:1406:14,2,7,66,1:552,73,277,2626,41:-188.295,-157.136,-266.792,-193.507,-265.381,-306.775,-178.089,-249.964,-286.334,-289.853,0,-71.883,-108.252,-92.8345,-94.0086,-195.851,-267.725,-304.096,-288.678,-110.595,-309.42 0|0:52:7,0,0,3,37,5:7:276:0,0,3,37,5:0,0,119,1479,202:-109.872,-111.979,-134.689,-111.979,-134.689,-134.689,-102.943,-125.653,-125.653,-124.75,0,-22.7116,-22.7116,-13.6801,-11.5735,-95.7825,-118.493,-118.493,-109.457,-6.51522,-116.988 0|0:25:7,1,0,0,16,1:7:277:1,0,0,16,1:40,0,0,639,41:-46.2814,-45.3606,-67.8636,-48.3886,-68.1646,-71.1923,-48.3886,-68.1646,-71.1923,-71.1923,0,-19.7806,-22.8058,-22.8058,-17.9893,-45.1054,-64.8822,-67.9099,-67.9099,-19.5235,-67.6089 dDocent_Contig_9241 14 . C A 56.7629 . AB=0.166667;ABP=26.1727;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=62;DPB=62;DPRA=1.89474;EPP=11.6962;EPPR=128.956;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=158;QR=2307;RO=58;RPL=0;RPP=11.6962;RPPR=128.956;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:14:14,0:14:555:0:0:0,-4.21442,-50.2897 0/0:14:14,0:14:559:0:0:0,-4.21442,-50.6519 0/1:24:20,4:20:798:4:158:-7.37525,0,-64.9097 0/0:10:10,0:10:395:0:0:0,-3.0103,-35.9057 dDocent_Contig_9242 30 . T C 142.091 . AB=0.21875;ABP=24.9965;AC=2;AF=0.25;AN=8;AO=8;CIGAR=1X;DP=63;DPB=63;DPRA=1.28205;EPP=20.3821;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=319;QR=2118;RO=55;RPL=0;RPP=20.3821;RPPR=122.441;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:23,2:23:894:2:82:-0.253928,0,-73.2493 0/0:18:17,1:17:648:1:41:0,-1.32397,-54.5561 0/0:13:13,0:13:498:0:0:0,-3.91339,-45.1607 0/1:7:2,5:2:78:5:196:-15.906,0,-5.29609 dDocent_Contig_9243 10 . G A 84.3427 . AB=0.178571;ABP=28.1373;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=139;DPB=139;DPRA=0.985714;EPP=16.0391;EPPR=291.816;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.166667;PAIREDR=0.894737;PAO=0;PQA=0;PQR=0;PRO=0;QA=240;QR=5316;RO=133;RPL=0;RPP=16.0391;RPPR=291.816;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=133;SRP=291.816;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:47:47,0:47:1865:0:0:0,-14.1484,-168.051 0/0:41:40,1:40:1605:1:38:0,-8.54496,-140.881 0/1:28:23,5:23:921:5:202:-10.1332,0,-74.7664 0/0:23:23,0:23:925:0:0:0,-6.92369,-83.5543 dDocent_Contig_9244 16 . A C 58.698 . AB=0.136364;ABP=53.5464;AC=3;AF=0.375;AN=8;AO=6;CIGAR=1X3M1X1M1X;DP=50;DPB=50;DPRA=2.44444;EPP=16.0391;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0.97561;PAO=0;PQA=0;PQR=0;PRO=0;QA=240;QR=1597;RO=41;RPL=0;RPP=16.0391;RPPR=92.0407;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:17:12,3,2:12:469:3,2:121,81:-6.36089,0,-37.6423,-3.29343,-31.8642,-41.2389 0|1:23:20,2,0:20:776:2,0:78,0:-0.38438,0,-63.1402,-6.40498,-63.7422,-70.1539 0|0:6:6,0,0:6:234:0,0:0,0:0,-1.80618,-21.4302,-1.80618,-21.4302,-21.4302 0|1:4:3,1,0:3:118:1,0:41,0:-2.89045,0,-9.79877,-3.79354,-10.0998,-13.488 dDocent_Contig_9245 19 . G A 5315.74 . AB=0.451074;ABP=11.7221;AC=4;AF=0.5;AN=8;AO=189;CIGAR=1X;DP=419;DPB=419;DPRA=0;EPP=387.775;EPPR=498.106;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=2.77556e-17;PAIRED=0.772487;PAIREDR=0.70614;PAO=0;PQA=0;PQR=0;PRO=0;QA=7378;QR=8989;RO=228;RPL=0;RPP=413.419;RPPR=498.106;RPR=189;RUN=1;SAF=186;SAP=387.775;SAR=3;SRF=228;SRP=498.106;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:105:52,53:52:2075:53:2077:-155.521,0,-155.326 0/1:151:91,58:91:3560:58:2295:-161.47,0,-275.195 0/1:114:58,56:58:2296:56:2151:-159.468,0,-172.497 0/1:49:27,22:27:1058:22:855:-62.5131,0,-80.7554 dDocent_Contig_9246 84 . G T 119.153 . AB=0.3;ABP=9.95901;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=76;DPB=76;DPRA=0.809524;EPP=18.2106;EPPR=152.842;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.913043;PAO=0;PQA=0;PQR=0;PRO=0;QA=247;QR=2362;RO=69;RPL=7;RPP=18.2106;RPPR=152.842;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=69;SRP=152.842;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:14,6:14:487:6:211:-13.3129,0,-38.1406 0/0:14:13,1:13:449:1:36:0,-0.616145,-37.1423 0/0:27:27,0:27:906:0:0:0,-8.12781,-81.8479 0/0:15:15,0:15:520:0:0:0,-4.51545,-47.1293 dDocent_Contig_9248 15 . G T 456.845 . AB=0.277778;ABP=33.8935;AC=3;AF=0.375;AN=8;AO=20;CIGAR=1X;DP=88;DPB=88;DPRA=1.5;EPP=46.4397;EPPR=150.67;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=796;QR=2675;RO=68;RPL=0;RPP=46.4397;RPPR=150.67;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=68;SRP=150.67;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:17,9:17:663:9:358:-24.7546,0,-52.1676 0/1:40:32,8:32:1259:8:317:-16.8538,0,-101.539 0/0:16:16,0:16:631:0:0:0,-4.81648,-57.1236 0/1:6:3,3:3:122:3:121:-9.47402,0,-9.56631 dDocent_Contig_9249 10 . C T 1708.13 . AB=0.125;ABP=61.6401;AC=4;AF=0.5;AN=8;AO=6;CIGAR=2X3M3X2M1X1M1X2M1X;DP=127;DPB=127;DPRA=0;EPP=16.0391;EPPR=100.727;GTI=0;LEN=1;MEANALT=2;MQM=37.6667;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=240;QR=1776;RO=45;RPL=0;RPP=16.0391;RPPR=100.727;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:48:24,18,6:24:948:18,6:693,240:-41.1541,0,-72.6218,-30.9258,-60.6009,-107.165 0|1:45:7,33,0:7:278:33,0:1290,0:-85.775,0,-12.9606,-87.8822,-22.8946,-110.779 0|1:27:13,14,0:13:511:14,0:550,0:-37.0275,0,-38.2105,-40.9409,-42.4249,-82.991 0|1:7:1,5,0:1:39:5,0:185,0:-13.9434,0,-1.74542,-14.2444,-3.25057,-17.4572 dDocent_Contig_9250 28 . C T 390.582 . AB=0.619048;ABP=5.59539;AC=1;AF=0.125;AN=8;AO=13;CIGAR=1X;DP=60;DPB=60;DPRA=1.61538;EPP=31.2394;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=516;QR=1894;RO=47;RPL=0;RPP=31.2394;RPPR=105.07;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:8,13:8:322:13:516:-40.456,0,-23.0256 0/0:13:13,0:13:526:0:0:0,-3.91339,-47.6868 0/0:23:23,0:23:923:0:0:0,-6.92369,-83.3757 0/0:3:3,0:3:123:0:0:0,-0.90309,-11.4648 dDocent_Contig_9251 97 . C A 240.376 . AB=0.317073;ABP=14.9269;AC=1;AF=0.166667;AN=6;AO=13;CIGAR=1X;DP=77;DPB=77;DPRA=2.27778;EPP=31.2394;EPPR=141.985;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=421;QR=2083;RO=64;RPL=13;RPP=31.2394;RPPR=141.985;RPR=0;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=64;SRP=141.985;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:25:25,0:25:800:0:0:0,-7.52575,-72.299 0/1:41:28,13:28:928:13:421:-25.8615,0,-71.4824 0/0:11:11,0:11:355:0:0:0,-3.31133,-32.2638 ./.:.:.:.:.:.:.:. dDocent_Contig_9252 12 . G A 315.866 . AB=0.259259;ABP=30.1939;AC=2;AF=0.25;AN=8;AO=15;CIGAR=1X;DP=115;DPB=115;DPRA=1.92157;EPP=35.5824;EPPR=220.158;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=602;QR=4049;RO=100;RPL=0;RPP=35.5824;RPPR=220.158;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=100;SRP=220.158;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:39:35,4:35:1429:4:160:-3.04275,0,-117.112 0/0:17:17,0:17:680:0:0:0,-5.11751,-61.527 0/0:44:43,1:43:1741:1:41:0,-9.15075,-152.805 0/1:15:5,10:5:199:10:401:-31.9321,0,-13.7731 dDocent_Contig_9253 43 . G T 91.4504 . AB=0.266667;ABP=10.1038;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=59;DPB=59;DPRA=1.02273;EPP=11.6962;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=163;QR=2179;RO=55;RPL=0;RPP=11.6962;RPPR=122.441;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:11,4:11:441:4:163:-10.543,0,-35.5305 0/0:10:10,0:10:398:0:0:0,-3.0103,-36.1793 0/0:22:22,0:22:874:0:0:0,-6.62266,-78.9716 0/0:12:12,0:12:466:0:0:0,-3.61236,-42.2872 dDocent_Contig_9254 133 . A G 78.0071 . AB=0.193548;ABP=28.2974;AC=2;AF=0.25;AN=8;AO=6;CIGAR=1X;DP=47;DPB=47;DPRA=1.9375;EPP=16.0391;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=220;QR=1499;RO=41;RPL=0;RPP=16.0391;RPPR=92.0407;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=92.0407;SRR=41;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:14,4:14:509:4:149:-8.35415,0,-40.7304 0/1:13:11,2:11:400:2:71:-2.82867,0,-32.4311 0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7436 0/0:6:6,0:6:230:0:0:0,-1.80618,-21.0654 dDocent_Contig_9255 107 . N A 265.17 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=10;CIGAR=1X;DP=10;DPB=10;DPRA=0;EPP=24.725;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=285;QR=0;RO=0;RPL=0;RPP=24.725;RPPR=0;RPR=10;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:4:0,4:0:0:4:114:-10.5429,-1.20412,0 1/1:6:0,6:0:0:6:171:-15.6729,-1.80618,0 ./.:.:.:.:.:.:.:. dDocent_Contig_9256 18 . C T 3091.24 . AB=0.0689655;ABP=96.6082;AC=0;AF=0;AN=8;AO=4;CIGAR=1X3M1X2M1X;DP=178;DPB=178;DPRA=0;EPP=11.6962;EPPR=118.098;GTI=0;LEN=1;MEANALT=6;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=160;QR=2060;RO=53;RPL=0;RPP=11.6962;RPPR=118.098;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:58:18,4,26,7:18:693:4,26,7:160,1031,284:-79.4518,-71.6895,-127.376,0,-43.7091,-49.0643,-61.4463,-105.157,-33.4644,-116.231 0|0:71:17,0,48,5:17:664:0,48,5:0,1900,201:-143.159,-148.276,-202.866,0,-54.5778,-40.1284,-131.71,-186.301,-38.0118,-184.796 0|0:39:18,0,20,1:18:703:0,20,1:0,799,41:-60.3821,-65.8007,-123.589,0,-57.7746,-51.754,-62.4161,-120.205,-54.3896,-119.904 0|0:10:0,0,3,7:0:0:0,3,7:0,119,283:-33.5289,-33.5289,-33.5289,-23.7353,-23.7353,-22.8322,-10.1921,-10.1921,0,-8.08488 dDocent_Contig_9257 21 . G A 113.51 . AB=0.189189;ABP=34.0565;AC=2;AF=0.25;AN=8;AO=8;CIGAR=1X;DP=88;DPB=88;DPRA=1.21053;EPP=20.3821;EPPR=176.728;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.675;PAO=0;PQA=0;PQR=0;PRO=0;QA=319;QR=3149;RO=80;RPL=0;RPP=20.3821;RPPR=176.728;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=80;SRP=176.728;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:19:19,0:19:742:0:0:0,-5.71957,-67.0985 0/0:32:31,1:31:1250:1:40:0,-5.63728,-108.772 0/1:13:11,2:11:402:2:82:-3.86629,0,-32.5983 0/1:24:19,5:19:755:5:197:-10.8812,0,-61.0448 dDocent_Contig_9258 12 . G A 155.37 . AB=0.209302;ABP=34.5724;AC=2;AF=0.25;AN=8;AO=10;CIGAR=1X;DP=75;DPB=75;DPRA=4.66667;EPP=24.725;EPPR=144.156;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=387;QR=2557;RO=65;RPL=0;RPP=24.725;RPPR=144.156;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=65;SRP=144.156;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:27:26,1:26:1015:1:41:0,-4.03324,-87.5532 0/1:25:20,5:20:792:5:191:-10.0308,0,-64.0734 0/1:18:14,4:14:549:4:155:-8.90411,0,-44.3338 0/0:5:5,0:5:201:0:0:0,-1.50515,-18.4709 dDocent_Contig_9259 19 . C G 279.122 . AB=0.352941;ABP=9.39698;AC=2;AF=0.25;AN=8;AO=13;CIGAR=1X;DP=63;DPB=63;DPRA=1.06667;EPP=31.2394;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=494;QR=2015;RO=50;RPL=0;RPP=31.2394;RPPR=111.584;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:15:15,0:15:601:0:0:0,-4.51545,-54.4288 0/1:23:19,4:19:774:4:134:-5.45623,0,-63.0551 0/0:14:13,1:13:517:1:40:0,-0.218741,-42.8788 0/1:11:3,8:3:123:8:320:-25.8532,0,-8.15346 dDocent_Contig_9260 94 . T G 54.9979 . AB=0.148148;ABP=32.0437;AC=2;AF=0.25;AN=8;AO=5;CIGAR=1X2M;DP=86;DPB=86;DPRA=0.904762;EPP=13.8677;EPPR=168.042;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=166;QR=2455;RO=76;RPL=5;RPP=13.8677;RPPR=168.042;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=76;SRP=168.042;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:27:23,0,4:23:748:0,4:0,134:-4.2634,-11.1871,-71.5569,0,-60.7032,-59.4991 0|1:27:23,4,0:23:738:4,0:138,0:-4.63264,0,-58.5955,-11.5563,-59.7996,-71.0146 0|0:21:20,0,0:20:635:0,0:0,0:0,-6.0206,-57.3711,-6.0206,-57.3711,-57.3711 0|0:11:10,0,1:10:334:0,1:0,32:0,-3.0103,-30.0632,-0.112017,-27.4861,-27.185 dDocent_Contig_9261 23 . T C 1196.99 . AB=0.109244;ABP=160.834;AC=1;AF=0.125;AN=8;AO=13;CIGAR=14M2X;DP=145;DPB=124;DPRA=0;EPP=31.2394;EPPR=181.071;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=523;QR=3215;RO=82;RPL=0;RPP=31.2394;RPPR=181.071;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=82;SRP=181.071;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:57:27,25,4:27:1060:25,4:938,160:-68.1728,0,-79.6754,-63.1162,-74.0194,-149.104 0|1:23:12,3,6:12:471:3,6:112,241:-16.2962,-10.733,-48.589,0,-29.6231,-36.9886 0|0:39:26,10,3:26:1029:10,3:381,122:-23.4071,0,-81.6683,-21.1648,-74.6142,-104.961 0|0:26:17,9,0:17:655:9,0:297,0:-19.2212,0,-51.4564,-24.3387,-54.1657,-78.1555 dDocent_Contig_9263 54 . G C 238.326 . AB=0.19403;ABP=57.4916;AC=1;AF=0.125;AN=8;AO=14;CIGAR=1X;DP=178;DPB=178;DPRA=1.57971;EPP=33.4109;EPPR=359.132;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=543;QR=6431;RO=164;RPL=14;RPP=33.4109;RPPR=359.132;RPR=0;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=164;SRP=359.132;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:43:43,0:43:1689:0:0:0,-12.9443,-152.237 0/1:67:54,13:54:2077:13:504:-25.5316,0,-166.952 0/0:42:41,1:41:1622:1:39:0,-8.74669,-142.32 0/0:26:26,0:26:1043:0:0:0,-7.82678,-94.1586 dDocent_Contig_9264 30 . C G 36.6507 . AB=0.1;ABP=30.8051;AC=0;AF=0;AN=8;AO=3;CIGAR=5M1X2M;DP=126;DPB=123.75;DPRA=0.774648;EPP=9.52472;EPPR=261.416;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=123;QR=4658;RO=119;RPL=0;RPP=9.52472;RPPR=261.416;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=119;SRP=261.416;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:37:37,0,0:37:1429:0,0:0,0:0,-11.1381,-128.878,-11.1381,-128.878,-128.878 0|0:35:34,0,1:34:1330:0,1:0,41:0,-10.235,-119.567,-6.44148,-116.183,-115.882 0|0:34:33,0,0:33:1307:0,0:0,0:0,-9.93399,-117.807,-9.93399,-117.807,-117.807 0|0:20:15,3,2:15:592:3,2:120,82:-5.36386,0,-47.7953,-3.10719,-41.9284,-51.2125 dDocent_Contig_9265 67 . T C 84.6942 . AB=0.6;ABP=3.44459;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=51;DPB=51;DPRA=0.326087;EPP=9.52472;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=1871;RO=48;RPL=3;RPP=9.52472;RPPR=107.241;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:5:2,3:2:77:3:122:-9.86734,0,-5.80368 0/0:9:9,0:9:366:0:0:0,-2.70927,-33.3049 0/0:21:21,0:21:811:0:0:0,-6.32163,-73.2951 0/0:16:16,0:16:617:0:0:0,-4.81648,-55.8554 dDocent_Contig_9266 61 . G C 1004.59 . AB=0.0889831;ABP=349.305;AC=4;AF=0.5;AN=8;AO=21;CIGAR=1X4M;DP=236;DPB=236;DPRA=0;EPP=48.6112;EPPR=378.675;GTI=0;LEN=1;MEANALT=1.75;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=838;QR=6656;RO=173;RPL=21;RPP=48.6112;RPPR=378.675;RPR=0;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=173;SRP=378.675;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:91:58,24,8:58:2239:24,8:934,318:-59.2842,0,-176.635,-50.5635,-157.68,-232.023 0|1:89:67,17,5:67:2596:17,5:674,194:-35.313,0,-208.142,-39.5481,-197.324,-251.296 0|1:35:31,0,4:31:1168:0,4:0,164:-4.61385,-13.9458,-109.615,0,-96.0744,-94.8703 0|1:21:17,0,4:17:653:0,4:0,162:-8.64512,-13.7626,-67.3455,0,-53.9835,-52.7793 dDocent_Contig_9267 9 . A T 30.0575 . AB=0.15;ABP=24.2907;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=360;DPB=360;DPRA=0.364341;EPP=16.0391;EPPR=771.712;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.99435;PAO=0;PQA=0;PQR=0;PRO=0;QA=232;QR=13445;RO=354;RPL=0;RPP=16.0391;RPPR=771.712;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=354;SRP=771.712;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:172:172,0:172:6569:0:0:0,-51.7772,-591.125 0/0:99:97,2:97:3665:2:78:0,-22.3985,-322.571 0/0:69:68,1:68:2572:1:39:0,-16.8745,-227.785 0/1:20:17,3:17:639:3:115:-4.70429,0,-51.8215 dDocent_Contig_9268 68 . T C 134.859 . AB=0.333333;ABP=8.07707;AC=2;AF=0.25;AN=8;AO=7;CIGAR=1X;DP=83;DPB=83;DPRA=0.33871;EPP=18.2106;EPPR=168.042;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.986842;PAO=0;PQA=0;PQR=0;PRO=0;QA=250;QR=2700;RO=76;RPL=7;RPP=18.2106;RPPR=168.042;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=76;SRP=168.042;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:31:31,0:31:1114:0:0:0,-9.33193,-100.571 0/0:31:31,0:31:1091:0:0:0,-9.33193,-98.4979 0/1:17:12,5:12:423:5:178:-11.2512,0,-33.2885 0/1:4:2,2:2:72:2:72:-5.6326,0,-5.63252 dDocent_Contig_9269 22 . C T 93.8917 . AB=0.125;ABP=120.27;AC=3;AF=0.375;AN=8;AO=14;CIGAR=1X3M;DP=140;DPB=140;DPRA=0;EPP=33.4109;EPPR=257.073;GTI=0;LEN=1;MEANALT=2.25;MQM=38.2143;MQMR=36.9915;NS=4;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=534;QR=4603;RO=117;RPL=0;RPP=33.4109;RPPR=257.073;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=117;SRP=257.073;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:44:40,0,2,1,1:40:1592:0,2,1,1:0,80,41,40:0,-12.0412,-132.617,-5.98625,-126.561,-125.959,-8.96955,-129.547,-123.49,-129.246,-9.01353,-129.589,-123.533,-126.519,-129.288 0|1:32:25,0,5,2,0:25:963:0,5,2,0:0,200,81,0:-7.61288,-15.1386,-67.3236,0,-52.1682,-50.6631,-9.03942,-61.2195,-46.0618,-60.6174,-15.1386,-67.3236,-52.1682,-61.2195,-67.3236 0|1:41:33,0,5,0,3:33:1304:0,5,0,3:0,199,0,111:-5.17115,-15.1051,-108.13,0,-93.0347,-91.5296,-15.1051,-108.13,-93.0347,-108.13,-6.59281,-99.6104,-84.5148,-99.6104,-98.7073 0|1:23:19,2,2,0,0:19:744:2,2,0,0:81,55,0,0:-0.442474,0,-55.9259,-2.41321,-52.7269,-58.2242,-6.16204,-56.528,-58.8263,-62.6283,-6.16204,-56.528,-58.8263,-62.6283,-62.6283 dDocent_Contig_9270 108 . A T 195.652 . AB=0.322034;ABP=19.2411;AC=2;AF=0.25;AN=8;AO=22;CIGAR=1X;DP=104;DPB=104;DPRA=0;EPP=50.7827;EPPR=181.071;GTI=0;LEN=1;MEANALT=1;MQM=33.4545;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=0;PAIREDR=0.47561;PAO=0;PQA=0;PQR=0;PRO=0;QA=726;QR=2799;RO=82;RPL=0;RPP=50.7827;RPPR=181.071;RPR=22;RUN=1;SAF=0;SAP=50.7827;SAR=22;SRF=0;SRP=181.071;SRR=82;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:29:27,2:27:927:2:69:0,-2.31058,-77.3223 0/1:35:20,15:20:682:15:489:-20.5403,0,-51.1638 0/1:24:20,4:20:681:4:134:-2.37976,0,-54.3839 0/0:16:15,1:15:509:1:34:0,-3.61904,-44.9363 dDocent_Contig_9271 10 . C A 167.098 . AB=0.242424;ABP=22.0271;AC=2;AF=0.25;AN=8;AO=8;CIGAR=1X;DP=62;DPB=62;DPRA=1.13793;EPP=20.3821;EPPR=120.27;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.611111;PAO=0;PQA=0;PQR=0;PRO=0;QA=325;QR=2177;RO=54;RPL=0;RPP=20.3821;RPPR=120.27;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:11,0:11:440:0:0:0,-3.31133,-39.956 0/0:18:18,0:18:727:0:0:0,-5.41854,-65.7547 0/1:29:22,7:22:888:7:284:-17.2035,0,-71.4978 0/1:4:3,1:3:122:1:41:-2.89045,0,-10.1684 dDocent_Contig_9272 23 . C T 55.4393 . AB=0.266667;ABP=10.1038;AC=2;AF=0.25;AN=8;AO=4;CIGAR=1X;DP=38;DPB=38;DPRA=0.652174;EPP=11.6962;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=141;QR=1374;RO=34;RPL=0;RPP=11.6962;RPPR=76.8404;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:12:12,0:12:486:0:0:0,-3.61236,-44.0912 0/1:5:4,1:4:159:1:38:-2.29212,0,-13.1857 0/0:11:11,0:11:445:0:0:0,-3.31133,-40.4057 0/1:10:7,3:7:284:3:103:-6.5976,0,-22.9235 dDocent_Contig_9273 11 . T A 84.1736 . AB=0.146341;ABP=47.552;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=96;DPB=96;DPRA=2.23636;EPP=16.0391;EPPR=198.443;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.988889;PAO=0;PQA=0;PQR=0;PRO=0;QA=242;QR=3585;RO=90;RPL=0;RPP=16.0391;RPPR=198.443;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=90;SRP=198.443;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:41:35,6:35:1413:6:242:-9.8153,0,-115.077 0/0:20:20,0:20:787:0:0:0,-6.0206,-71.1517 0/0:23:23,0:23:928:0:0:0,-6.92369,-83.8242 0/0:12:12,0:12:457:0:0:0,-3.61236,-41.4736 dDocent_Contig_9274 67 . G C 90.2191 . AB=0.5;ABP=3.0103;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=51;DPB=51;DPRA=0.55814;EPP=11.6962;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=142;QR=1696;RO=47;RPL=4;RPP=11.6962;RPPR=105.07;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:14:14,0:14:503:0:0:0,-4.21442,-45.6047 0/1:8:4,4:4:142:4:142:-10.7209,0,-10.7207 0/0:10:10,0:10:359:0:0:0,-3.0103,-32.6511 0/0:19:19,0:19:692:0:0:0,-5.71957,-62.6087 dDocent_Contig_9275 14 . A C 77.1981 . AB=0.227273;ABP=17.2236;AC=2;AF=0.25;AN=8;AO=5;CIGAR=1X;DP=47;DPB=47;DPRA=0.88;EPP=13.8677;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=49.6;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=195;QR=1653;RO=42;RPL=0;RPP=13.8677;RPPR=94.2121;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:20:20,0:20:773:0:0:0,-6.0206,-69.8838 0/1:15:12,3:12:485:3:121:-6.22412,0,-39.4855 0/1:7:5,2:5:204:2:74:-4.89345,0,-16.6368 0/0:5:5,0:5:191:0:0:0,-1.50515,-17.5547 dDocent_Contig_9276 56 . T C 285.493 . AB=0.166667;ABP=101.45;AC=2;AF=0.25;AN=8;AO=19;CIGAR=1X;DP=171;DPB=171;DPRA=3.46667;EPP=44.2683;EPPR=333.074;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.842105;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=770;QR=6089;RO=152;RPL=19;RPP=44.2683;RPPR=333.074;RPR=0;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=152;SRP=333.074;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:68:55,13:55:2194:13:527:-27.3065,0,-177.165 0/0:54:52,2:52:2093:2:82:0,-8.47594,-180.772 0/1:34:30,4:30:1192:4:161:-4.64046,0,-97.3121 0/0:15:15,0:15:610:0:0:0,-4.51545,-55.2378 dDocent_Contig_9277 22 . A T 1883.01 . AB=0.297794;ABP=99.6089;AC=4;AF=0.5;AN=8;AO=81;CIGAR=1X2M3I2M;DP=272;DPB=320.6;DPRA=0;EPP=178.9;EPPR=402.561;GTI=0;LEN=1;MEANALT=1.75;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3055;QR=7293;RO=184;RPL=0;RPP=178.9;RPPR=402.561;RPR=81;RUN=1;SAF=81;SAP=178.9;SAR=0;SRF=184;SRP=402.561;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:89:46,38,5:46:1828:38,5:1431,199:-103.397,0,-139.053,-100.856,-134.106,-249.855 0|1:91:68,23,0:68:2707:23,0:869,0:-51.1395,0,-216.364,-71.6096,-223.288,-294.515 0|1:57:47,8,1:47:1841:8,1:302,41:-10.5788,0,-148.95,-21.3403,-147.974,-172.424 0|1:35:23,12,0:23:917:12,0:453,0:-30.5832,0,-72.303,-37.5069,-75.9153,-113.038 dDocent_Contig_9279 108 . C T 602.79 . AB=0.439394;ABP=5.11597;AC=3;AF=0.375;AN=8;AO=29;CIGAR=1X;DP=72;DPB=72;DPRA=3.66667;EPP=65.983;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=925;QR=1343;RO=43;RPL=0;RPP=65.983;RPPR=96.3836;RPR=29;RUN=1;SAF=0;SAP=65.983;SAR=29;SRF=0;SRP=96.3836;SRR=43;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:6:6,0:6:206:0:0:0,-1.80618,-18.8767 0/1:30:20,10:20:620:10:313:-19.444,0,-47.0656 0/1:29:11,18:11:343:18:585:-44.2287,0,-22.4449 0/1:7:6,1:6:174:1:27:-0.592573,0,-13.8398 dDocent_Contig_9281 8 . A G 460.671 . AB=0.181818;ABP=138.431;AC=3;AF=0.375;AN=8;AO=30;CIGAR=1X;DP=179;DPB=179;DPRA=0;EPP=68.1545;EPPR=326.56;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1153;QR=5705;RO=149;RPL=0;RPP=68.1545;RPPR=326.56;RPR=30;RUN=1;SAF=30;SAP=68.1545;SAR=0;SRF=149;SRP=326.56;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:51:39,12:39:1485:12:466:-26.9396,0,-118.574 0/1:73:63,10:63:2417:10:378:-12.3976,0,-195.763 0/1:30:24,6:24:913:6:231:-12.127,0,-73.4558 0/0:25:23,2:23:890:2:78:0,-0.122277,-73.0157 dDocent_Contig_9282 48 . G A 99.9394 . AB=0.227273;ABP=17.2236;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=65;DPB=65;DPRA=1.53488;EPP=13.8677;EPPR=133.299;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=196;QR=2327;RO=60;RPL=0;RPP=13.8677;RPPR=133.299;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:17,5:17:681:5:196:-11.3919,0,-54.9945 0/0:15:15,0:15:588:0:0:0,-4.51545,-53.2556 0/0:18:18,0:18:717:0:0:0,-5.41854,-64.8552 0/0:10:10,0:10:341:0:0:0,-3.0103,-31.0027 dDocent_Contig_9284 36 . T C 2670.04 . AB=0.471795;ABP=4.35773;AC=4;AF=0.5;AN=8;AO=92;CIGAR=1X;DP=195;DPB=195;DPRA=0;EPP=202.786;EPPR=226.672;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3688;QR=4050;RO=103;RPL=0;RPP=202.786;RPPR=226.672;RPR=92;RUN=1;SAF=92;SAP=202.786;SAR=0;SRF=103;SRP=226.672;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:74:52,22:52:2046:22:873:-56.6016,0,-162.046 0/1:82:36,46:36:1417:46:1866:-143.45,0,-103.095 0/1:23:3,20:3:116:20:800:-65.3952,0,-3.89333 0/1:16:12,4:12:471:4:149:-8.95407,0,-37.9212 dDocent_Contig_9285 37 . A G 184.986 . AB=0.180328;ABP=57.1547;AC=2;AF=0.25;AN=8;AO=11;CIGAR=1X;DP=246;DPB=246;DPRA=0.32973;EPP=26.8965;EPPR=513.306;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=439;QR=9329;RO=235;RPL=0;RPP=26.8965;RPPR=513.306;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=235;SRP=513.306;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:84:84,0:84:3349:0:0:0,-25.2865,-301.454 0/0:101:101,0:101:3979:0:0:0,-30.404,-358.1 0/1:50:41,9:41:1638:9:360:-17.7099,0,-132.592 0/1:11:9,2:9:363:2:79:-4.18591,0,-29.7227 dDocent_Contig_9286 11 . T C 2321.39 . AB=0.529412;ABP=4.1599;AC=4;AF=0.5;AN=8;AO=81;CIGAR=1X1M2X;DP=153;DPB=153;DPRA=0;EPP=178.9;EPPR=159.356;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=55.6389;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=0.875;PAO=0;PQA=0;PQR=0;PRO=0;QA=3159;QR=2853;RO=72;RPL=0;RPP=178.9;RPPR=159.356;RPR=81;RUN=1;SAF=81;SAP=178.9;SAR=0;SRF=72;SRP=159.356;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:28:6,22:6:234:22:852:-68.5692,0,-12.9993 0|1:47:20,27:20:794:27:1069:-82.3567,0,-55.9103 0|1:59:37,22:37:1469:22:844:-58.5134,0,-107 0|1:19:9,10:9:356:10:394:-30.0979,0,-23.3092 dDocent_Contig_9287 31 . A C 810.167 . AB=0.326733;ABP=29.3475;AC=4;AF=0.5;AN=8;AO=33;CIGAR=1X;DP=101;DPB=101;DPRA=0;EPP=74.6689;EPPR=150.67;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.909091;PAIREDR=0.838235;PAO=0;PQA=0;PQR=0;PRO=0;QA=1304;QR=2721;RO=68;RPL=0;RPP=74.6689;RPPR=150.67;RPR=33;RUN=1;SAF=33;SAP=74.6689;SAR=0;SRF=68;SRP=150.67;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:4,14:4:158:14:538:-43.332,0,-9.18082 0/1:26:22,4:22:892:4:163:-7.23165,0,-72.759 0/1:43:31,12:31:1240:12:482:-30.7851,0,-98.9279 0/1:14:11,3:11:431:3:121:-7.06578,0,-34.9233 dDocent_Contig_9288 97 . C A 239.704 . AB=0.166667;ABP=130.403;AC=1;AF=0.125;AN=8;AO=23;CIGAR=1X;DP=279;DPB=279;DPRA=4.16667;EPP=52.9542;EPPR=556.736;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=756;QR=8495;RO=255;RPL=23;RPP=52.9542;RPPR=556.736;RPR=0;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=255;SRP=556.736;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:132:110,22:110:3658:22:720:-25.3684,0,-289.709 0/0:93:91,1:91:3039:1:36:0,-24.3314,-270.276 0/0:32:32,0:32:1050:0:0:0,-9.63296,-94.8 0/0:22:22,0:22:748:0:0:0,-6.62266,-67.6367 dDocent_Contig_9289 31 . C A 122.645 . AB=0.205882;ABP=28.557;AC=3;AF=0.375;AN=8;AO=7;CIGAR=1X;DP=58;DPB=58;DPRA=0.472222;EPP=18.2106;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=279;QR=2037;RO=51;RPL=0;RPP=18.2106;RPPR=113.755;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:12,3:12:488:3:118:-6.48706,0,-39.756 0/1:7:4,3:4:164:3:121:-9.17278,0,-13.0427 0/0:24:24,0:24:943:0:0:0,-7.22472,-85.1592 0/1:12:11,1:11:442:1:40:-0.383319,0,-36.5226 dDocent_Contig_9290 40 . T A 70.2353 . AB=0.126761;ABP=88.9211;AC=2;AF=0.25;AN=8;AO=11;CIGAR=1X;DP=164;DPB=164;DPRA=0.625731;EPP=26.8965;EPPR=333.074;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=427;QR=5306;RO=152;RPL=0;RPP=26.8965;RPPR=333.074;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=152;SRP=333.074;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:57:56,0:56:1994:0:0:0,-16.8577,-179.622 0/1:54:48,6:48:1689:6:227:-4.53644,0,-136.028 0/0:36:34,2:34:1145:2:82:0,-3.0574,-95.554 0/1:17:14,3:14:478:3:118:-5.88469,0,-38.2188 dDocent_Contig_9291 55 . T C 1311.75 . AB=0.0719424;ABP=224.235;AC=4;AF=0.5;AN=8;AO=10;CIGAR=1X3M;DP=166;DPB=166;DPRA=0;EPP=24.725;EPPR=226.672;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.4;PAIREDR=0.883495;PAO=0;PQA=0;PQR=0;PRO=0;QA=397;QR=3958;RO=103;RPL=10;RPP=24.725;RPPR=226.672;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=103;SRP=226.672;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:27:16,11,0:16:613:11,0:429,0:-30.837,0,-47.3789,-35.6535,-50.6903,-85.9569 0|1:51:44,5,2:44:1683:5,2:193,81:-2.58971,0,-136.558,-9.15048,-131.383,-146.629 0|1:47:28,13,6:28:1075:13,6:506,237:-33.1516,0,-84.3083,-22.0761,-68.7172,-108.497 0|1:41:15,24,2:15:587:24,2:931,79:-71.9679,0,-41.0358,-69.9822,-41.7595,-117.645 dDocent_Contig_9292 8 . A G 36.8751 . AB=0.133333;ABP=38.0434;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=184;DPB=184;DPRA=0.584416;EPP=11.6962;EPPR=393.875;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=156;QR=6875;RO=180;RPL=0;RPP=11.6962;RPPR=393.875;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=180;SRP=393.875;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:52:52,0:52:1981:0:0:0,-15.6536,-178.532 0/0:71:71,0:71:2723:0:0:0,-21.3731,-245.255 0/0:31:31,0:31:1191:0:0:0,-9.33193,-107.487 0/1:30:26,4:26:980:4:156:-5.38639,0,-79.478 dDocent_Contig_9293 190 . T C 368.674 . AB=0.3125;ABP=17.6677;AC=3;AF=0.375;AN=8;AO=15;CIGAR=1X;DP=81;DPB=81;DPRA=0.484848;EPP=35.5824;EPPR=146.327;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=611;QR=2645;RO=66;RPL=15;RPP=35.5824;RPPR=146.327;RPR=0;RUN=1;SAF=0;SAP=35.5824;SAR=15;SRF=0;SRP=146.327;SRR=66;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:33:33,0:33:1336:0:0:0,-9.93399,-120.496 0/1:21:19,2:19:757:2:82:-1.45805,0,-62.1257 0/1:13:4,9:4:154:9:366:-29.3912,0,-10.316 0/1:14:10,4:10:398:4:163:-10.844,0,-31.9613 dDocent_Contig_9294 10 . A T 673.307 . AB=0.375;ABP=8.43898;AC=5;AF=0.625;AN=8;AO=25;CIGAR=1X3M1X;DP=50;DPB=50;DPRA=0;EPP=57.2971;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=55.2;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=961;QR=967;RO=25;RPL=0;RPP=57.2971;RPPR=57.2971;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:21:11,10:11:429:10:384:-26.1601,0,-32.6437 1|1:10:0,10:0:0:10:378:-34.3711,-3.0103,0 0|1:12:8,4:8:308:4:159:-10.1207,0,-24.4693 0|1:7:6,1:6:230:1:40:-1.88847,0,-18.959 dDocent_Contig_9295 44 . A G 3263.64 . AB=0.736111;ABP=72.7387;AC=4;AF=0.5;AN=8;AO=106;CIGAR=1X;DP=144;DPB=144;DPRA=0;EPP=233.186;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.981132;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4177;QR=1506;RO=38;RPL=0;RPP=233.186;RPPR=85.5263;RPR=106;RUN=1;SAF=106;SAP=233.186;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:45:14,31:14:540:31:1235:-97.8806,0,-35.3914 0/1:28:9,19:9:359:19:761:-60.3817,0,-24.2443 0/1:60:10,50:10:404:50:1940:-156.745,0,-18.658 0/1:11:5,6:5:203:6:241:-18.755,0,-15.3417 dDocent_Contig_9296 96 . G A 917.986 . AB=0.372727;ABP=18.487;AC=3;AF=0.375;AN=8;AO=42;CIGAR=1X;DP=163;DPB=163;DPRA=0;EPP=94.2121;EPPR=265.758;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1462;QR=4289;RO=121;RPL=42;RPP=94.2121;RPPR=265.758;RPR=0;RUN=1;SAF=42;SAP=94.2121;SAR=0;SRF=121;SRP=265.758;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:53:52,1:52:1847:1:36:0,-12.3563,-162.913 0/1:64:32,32:32:1143:32:1107:-80.6677,0,-83.914 0/1:30:27,3:27:954:3:108:-1.04427,0,-77.1441 0/1:16:10,6:10:345:6:211:-14.517,0,-26.5655 dDocent_Contig_9297 44 . G A 112.62 . AB=0.263158;ABP=12.2676;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=60;DPB=60;DPRA=1.39024;EPP=13.8677;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=200;QR=2164;RO=55;RPL=0;RPP=13.8677;RPPR=122.441;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:14,5:14:537:5:200:-12.66,0,-42.9511 0/0:18:18,0:18:709:0:0:0,-5.41854,-64.135 0/0:10:10,0:10:397:0:0:0,-3.0103,-36.0888 0/0:13:13,0:13:521:0:0:0,-3.91339,-47.2374 dDocent_Contig_9298 155 . C T 57.6014 . AB=0.214286;ABP=12.937;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=58;DPB=58;DPRA=0.954545;EPP=9.52472;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=2158;RO=55;RPL=0;RPP=9.52472;RPPR=122.441;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=122.441;SRR=55;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:11,3:11:447:3:122:-7.15807,0,-36.3717 0/0:26:26,0:26:996:0:0:0,-7.82678,-89.9237 0/0:11:11,0:11:433:0:0:0,-3.31133,-39.3236 0/0:7:7,0:7:282:0:0:0,-2.10721,-25.7532 dDocent_Contig_9299 84 . A C 37.9937 . AB=0.166667;ABP=26.1727;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=44;DPB=44;DPRA=2.4;EPP=11.6962;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=139;QR=1448;RO=40;RPL=4;RPP=11.6962;RPPR=89.8692;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:14:14,0:14:518:0:0:0,-4.21442,-46.9624 ./.:.:.:.:.:.:.:. 0/1:24:20,4:20:719:4:139:-5.62318,0,-57.8095 0/0:6:6,0:6:211:0:0:0,-1.80618,-19.3333 dDocent_Contig_9300 20 . T A 188.612 . AB=0.189655;ABP=51.5315;AC=2;AF=0.25;AN=8;AO=16;CIGAR=1X;DP=141;DPB=141;DPRA=2.8;EPP=37.7539;EPPR=274.444;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=638;QR=5070;RO=125;RPL=0;RPP=37.7539;RPPR=274.444;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=125;SRP=274.444;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:68:63,5:63:2552:5:205:0,-1.63503,-210.964 0/1:50:43,7:43:1746:7:270:-9.60896,0,-142.298 0/1:8:4,4:4:164:4:163:-12.6502,0,-12.7417 0/0:15:15,0:15:608:0:0:0,-4.51545,-55.0574 dDocent_Contig_9301 118 . C T 260.191 . AB=0.371429;ABP=8.03571;AC=2;AF=0.25;AN=8;AO=13;CIGAR=1X;DP=70;DPB=70;DPRA=1;EPP=31.2394;EPPR=126.784;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=427;QR=1876;RO=57;RPL=0;RPP=31.2394;RPPR=126.784;RPR=13;RUN=1;SAF=0;SAP=31.2394;SAR=13;SRF=0;SRP=126.784;SRR=57;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:18:18,0:18:606:0:0:0,-5.41854,-54.8587 0/1:28:16,12:16:523:12:398:-27.7114,0,-38.9515 0/0:17:17,0:17:555:0:0:0,-5.11751,-50.2607 0/1:7:6,1:6:192:1:29:-0.792446,0,-15.4878 dDocent_Contig_9303 12 . A T 344.083 . AB=0.232877;ABP=48.2543;AC=3;AF=0.375;AN=8;AO=17;CIGAR=1X;DP=80;DPB=80;DPRA=3.47619;EPP=39.9253;EPPR=139.813;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.984127;PAO=0;PQA=0;PQR=0;PRO=0;QA=674;QR=2484;RO=63;RPL=0;RPP=39.9253;RPPR=139.813;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=63;SRP=139.813;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:18,7:18:686:7:280:-18.046,0,-54.5257 0/1:39:32,7:32:1272:7:274:-13.2822,0,-103.011 0/0:7:7,0:7:285:0:0:0,-2.10721,-26.0244 0/1:9:6,3:6:241:3:120:-8.47804,0,-19.3559 dDocent_Contig_9304 56 . C T 506.321 . AB=0.25;ABP=9.52472;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X3M1X;DP=51;DPB=51;DPRA=0;EPP=9.52472;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=117;QR=1194;RO=30;RPL=3;RPP=9.52472;RPPR=68.1545;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:11:7,0,4:7:277:0,4:0,162:-11.6556,-13.7628,-36.5548,0,-23.1931,-21.989 0|0:18:5,0,12:5:200:0,12:0,466:-37.0636,-38.5688,-55.054,0,-16.7417,-13.1294 0|1:12:9,3,0:9:356:3,0:117,0:-7.29785,0,-28.7894,-10.0071,-29.6925,-39.3086 0|0:10:9,0,1:9:361:0,1:0,41:-1.08427,-3.79354,-33.5301,0,-30.1452,-29.8442 dDocent_Contig_9305 44 . T C 55.9509 . AB=0.151515;ABP=37.8197;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X3M1X;DP=41;DPB=41;DPRA=2.0625;EPP=13.8677;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=202;QR=1409;RO=36;RPL=0;RPP=13.8677;RPPR=81.1833;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:18:16,2:16:627:2:80:-2.17325,0,-51.3478 0|1:15:12,3:12:476:3:122:-6.85704,0,-38.6747 0|0:8:8,0:8:306:0:0:0,-2.40824,-27.8975 .:.:.:.:.:.:.:. dDocent_Contig_9306 25 . C A 3197.84 . AB=0.514286;ABP=3.38255;AC=4;AF=0.5;AN=8;AO=108;CIGAR=1X;DP=210;DPB=210;DPRA=0;EPP=237.529;EPPR=224.5;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4325;QR=4107;RO=102;RPL=0;RPP=237.529;RPPR=224.5;RPR=108;RUN=1;SAF=108;SAP=237.529;SAR=0;SRF=102;SRP=224.5;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:78:46,32:46:1852:32:1278:-91.8066,0,-143.397 0/1:72:34,38:34:1366:38:1518:-115.187,0,-101.523 0/1:33:17,16:17:686:16:649:-48.8093,0,-52.1351 0/1:27:5,22:5:203:22:880:-71.3792,0,-10.5252 dDocent_Contig_9307 8 . A G 351.006 . AB=0.194444;ABP=90.593;AC=3;AF=0.375;AN=8;AO=21;CIGAR=1X;DP=127;DPB=127;DPRA=1.89474;EPP=48.6112;EPPR=233.186;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=799;QR=4052;RO=106;RPL=0;RPP=48.6112;RPPR=233.186;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=106;SRP=233.186;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:53:45,8:45:1713:8:308:-12.1278,0,-138.474 0/1:41:30,11:30:1156:11:413:-25.1747,0,-91.998 0/0:19:19,0:19:721:0:0:0,-5.71957,-65.2181 0/1:14:12,2:12:462:2:78:-3.18905,0,-37.7162 dDocent_Contig_9308 13 . A T 2356.73 . AB=0.416667;ABP=16.0391;AC=4;AF=0.5;AN=8;AO=90;CIGAR=1X1M3D1M;DP=216;DPB=171;DPRA=0;EPP=198.443;EPPR=276.616;GTI=0;LEN=1;MEANALT=1;MQM=49.7889;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3486;QR=4972;RO=126;RPL=0;RPP=198.443;RPPR=276.616;RPR=90;RUN=1;SAF=90;SAP=198.443;SAR=0;SRF=126;SRP=276.616;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:79:43,36:43:1680:36:1396:-99.4195,0,-127.657 0|1:99:53,46:53:2101:46:1778:-127.646,0,-159.484 0|1:22:18,4:18:712:4:156:-7.74462,0,-57.7858 0|1:16:12,4:12:479:4:156:-8.2614,0,-38.6458 dDocent_Contig_9309 195 . A C 60.7688 . AB=0.272727;ABP=7.94546;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=55;DPB=55;DPRA=0.387097;EPP=11.6962;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=154;QR=1980;RO=51;RPL=4;RPP=11.6962;RPPR=113.755;RPR=0;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=113.755;SRR=51;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 0/1:11:8,3:8:302:3:117:-7.59888,0,-24.2233 0/0:31:31,0:31:1206:0:0:0,-9.33193,-108.822 0/0:13:12,1:12:472:1:37:0,-0.215561,-39.1323 dDocent_Contig_9310 19 . T C 81.403 . AB=0.208333;ABP=20.744;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=71;DPB=71;DPRA=1.53191;EPP=13.8677;EPPR=146.327;GTI=0;LEN=1;MEANALT=1;MQM=38.6;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=205;QR=2657;RO=66;RPL=0;RPP=13.8677;RPPR=146.327;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=66;SRP=146.327;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:19,5:19:748:5:205:-9.53824,0,-60.4103 0/0:28:28,0:28:1138:0:0:0,-8.42884,-102.699 0/0:11:11,0:11:446:0:0:0,-3.31133,-40.4958 0/0:8:8,0:8:325:0:0:0,-2.40824,-29.6194 dDocent_Contig_9311 15 . G A 427.692 . AB=0.346154;ABP=13.7006;AC=4;AF=0.5;AN=8;AO=18;CIGAR=1X;DP=52;DPB=52;DPRA=0;EPP=42.0968;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.611111;PAIREDR=0.941176;PAO=0;PQA=0;PQR=0;PRO=0;QA=714;QR=1366;RO=34;RPL=0;RPP=42.0968;RPPR=76.8404;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:8,3:8:318:3:120:-7.87657,0,-25.6748 0/1:10:8,2:8:321:2:82:-4.76938,0,-26.2472 0/1:14:3,11:3:123:11:430:-34.8358,0,-7.25037 0/1:17:15,2:15:604:2:82:-2.66217,0,-49.5816 dDocent_Contig_9312 95 . G A 852.954 . AB=0.325397;ABP=36.3751;AC=4;AF=0.5;AN=8;AO=41;CIGAR=1X;DP=126;DPB=126;DPRA=0;EPP=92.0407;EPPR=187.585;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1436;QR=2841;RO=85;RPL=41;RPP=92.0407;RPPR=187.585;RPR=0;RUN=1;SAF=41;SAP=92.0407;SAR=0;SRF=85;SRP=187.585;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:49:31,18:31:1031:18:631:-42.3669,0,-78.3429 0/1:23:8,15:8:277:15:528:-40.9284,0,-18.3433 0/1:40:34,6:34:1151:6:207:-6.92682,0,-91.8529 0/1:14:12,2:12:382:2:70:-2.43291,0,-30.4727 dDocent_Contig_9313 12 . C A 757.076 . AB=0.183673;ABP=45.5977;AC=3;AF=0.375;AN=8;AO=9;CIGAR=1X1M2I1X1M1X2M1X;DP=149;DPB=151.25;DPRA=4.08333;EPP=22.5536;EPPR=216.142;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.924528;PAO=0;PQA=0;PQR=0;PRO=0;QA=352;QR=4184;RO=106;RPL=0;RPP=22.5536;RPPR=233.186;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=104;SRP=216.142;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:58:35,22,0:35:1390:22,0:826,0:-57.0946,0,-107.806,-67.6307,-114.429,-182.074 0|1:49:34,6,9:34:1350:6,9:240,352:-18.6983,-9.15925,-118.494,0,-91.363,-108.425 0|1:30:25,4,0:25:974:4,0:156,0:-5.31258,0,-78.865,-12.8383,-80.0691,-92.8917 0|0:12:12,0,0:12:470:0,0:0,0:0,-3.61236,-42.651,-3.61236,-42.651,-42.651 dDocent_Contig_9315 87 . C T 155.362 . AB=0.208333;ABP=38.4777;AC=1;AF=0.125;AN=8;AO=11;CIGAR=1X;DP=102;DPB=102;DPRA=1.91429;EPP=26.8965;EPPR=200.614;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=379;QR=3105;RO=91;RPL=11;RPP=26.8965;RPPR=200.614;RPR=0;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=91;SRP=200.614;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:48:38,10:38:1325:10:345:-16.9342,0,-105.103 0/0:26:26,0:26:862:0:0:0,-7.82678,-77.8843 0/0:9:9,0:9:304:0:0:0,-2.70927,-27.6879 0/0:19:18,1:18:614:1:34:0,-2.32066,-52.1824 dDocent_Contig_9316 95 . G A 128.353 . AB=0.2;ABP=38.1882;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X;DP=95;DPB=95;DPRA=2.7;EPP=22.5536;EPPR=189.757;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=305;QR=2947;RO=86;RPL=9;RPP=22.5536;RPPR=189.757;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=86;SRP=189.757;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:45:36,9:36:1220:9:305:-14.2332,0,-96.5541 0/0:31:31,0:31:1065:0:0:0,-9.33193,-96.1592 0/0:11:11,0:11:383:0:0:0,-3.31133,-34.805 0/0:8:8,0:8:279:0:0:0,-2.40824,-25.449 dDocent_Contig_9317 105 . N C 68.3781 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=3X7I2M;DP=2;DPB=4.8;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=72;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:2:0,2:0:0:2:72:-6.83672,-0.60206,0 .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. dDocent_Contig_9318 35 . A G 45220.3 . AB=0.414396;ABP=250.612;AC=4;AF=0.5;AN=8;AO=1612;CIGAR=1X;DP=3890;DPB=3890;DPRA=0;EPP=4.7561;EPPR=34.6966;GTI=0;LEN=1;MEANALT=1.75;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.0279156;PAIREDR=0.0202643;PAO=0;PQA=0;PQR=0;PRO=0;QA=63375;QR=88758;RO=2270;RPL=0;RPP=3503.42;RPPR=4932.25;RPR=1612;RUN=1;SAF=824;SAP=4.7561;SAR=788;SRF=1044;SRP=34.6966;SRR=1226;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:1301:751,546:751:29451:546:21382:-1531.85,0,-2257.33 0/1:983:587,396:587:22957:396:15612:-1108.02,0,-1768.42 0/1:1132:631,499:631:24541:499:19599:-1421.83,0,-1866.27 0/1:474:301,171:301:11809:171:6782:-467.729,0,-919.695 dDocent_Contig_9319 12 . A G 36.8717 . AB=0.129032;ABP=40.0654;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=113;DPB=113;DPRA=1.13415;EPP=11.6962;EPPR=239.701;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.568807;PAO=0;PQA=0;PQR=0;PRO=0;QA=156;QR=4361;RO=109;RPL=0;RPP=11.6962;RPPR=239.701;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=109;SRP=239.701;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:27,4:27:1088:4:156:-5.08502,0,-88.8741 0/0:25:25,0:25:1014:0:0:0,-7.52575,-91.5522 0/0:36:36,0:36:1431:0:0:0,-10.8371,-129.045 0/0:21:21,0:21:828:0:0:0,-6.32163,-74.8363 dDocent_Contig_9320 141 . G C 32.2045 . AB=0.285714;ABP=5.80219;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=64;DPB=64;DPRA=1;EPP=13.8677;EPPR=131.127;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.983051;PAO=0;PQA=0;PQR=0;PRO=0;QA=190;QR=1968;RO=59;RPL=0;RPP=13.8677;RPPR=131.127;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=131.127;SRR=59;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:28:26,2:26:831:2:78:0,-1.02537,-67.6803 0/0:16:16,0:16:548:0:0:0,-4.81648,-49.6443 0/0:13:12,1:12:415:1:38:0,-0.116121,-33.8848 0/1:7:5,2:5:174:2:74:-4.91822,0,-13.8947 dDocent_Contig_9321 7 . C A 175.539 . AB=0.133929;ABP=133.376;AC=3;AF=0.375;AN=8;AO=15;CIGAR=1X;DP=116;DPB=116;DPRA=9.33333;EPP=35.5824;EPPR=222.329;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=580;QR=3873;RO=101;RPL=0;RPP=35.5824;RPPR=222.329;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=101;SRP=222.329;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:65:54,11:54:2073:11:424:-18.9471,0,-167.233 0/1:35:32,3:32:1221:3:117:-0.374331,0,-99.6442 0/1:12:11,1:11:425:1:39:-0.284205,0,-34.9919 0/0:4:4,0:4:154:0:0:0,-1.20412,-14.2335 dDocent_Contig_9322 14 . C T 68.698 . AB=0.119403;ABP=87.3088;AC=2;AF=0.25;AN=8;AO=9;CIGAR=1X;DP=158;DPB=158;DPRA=0.95122;EPP=22.5536;EPPR=326.56;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=368;QR=6030;RO=149;RPL=0;RPP=22.5536;RPPR=326.56;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=149;SRP=326.56;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:45:41,4:41:1654:4:164:-1.60355,0,-135.537 0/0:41:41,0:41:1671:0:0:0,-12.3422,-150.606 0/0:50:49,1:49:1975:1:40:0,-11.0558,-173.939 0/1:22:18,4:18:730:4:164:-8.52724,0,-59.402 dDocent_Contig_9323 131 . T G 1049.53 . AB=0.461538;ABP=4.01252;AC=3;AF=0.375;AN=8;AO=36;CIGAR=1M11I5M1X;DP=114;DPB=217.714;DPRA=0;EPP=81.1833;EPPR=107.241;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1016;QR=1634;RO=48;RPL=0;RPP=81.1833;RPPR=107.241;RPR=36;RUN=1;SAF=0;SAP=81.1833;SAR=36;SRF=0;SRP=107.241;SRR=48;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:39:16,21,0:16:541:21,0:619,0:-44.7673,0,-37.7737,-49.5837,-44.0953,-93.4666 0|0:36:15,0,20:15:517:0,20:0,578:-41.5043,-46.0198,-88.0404,0,-42.0761,-36.0555 0|1:22:9,9,4:9:305:9,4:218,114:-14.1694,0,-22.0595,-7.81115,-15.7309,-31.3868 0|1:17:8,6,3:8:271:6,3:179,82:-11.9097,0,-20.2134,-7.85001,-15.5612,-28.9421 dDocent_Contig_9324 30 . T C 455.292 . AB=0.375;ABP=9.52472;AC=3;AF=0.375;AN=8;AO=19;CIGAR=1X;DP=72;DPB=72;DPRA=0;EPP=44.2683;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.962264;PAO=0;PQA=0;PQR=0;PRO=0;QA=750;QR=2109;RO=53;RPL=0;RPP=44.2683;RPPR=118.098;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:12,7:12:472:7:282:-20.0332,0,-37.1051 0/0:24:23,1:23:930:1:36:0,-3.62644,-80.403 0/1:18:13,5:13:517:5:203:-13.2345,0,-41.4576 0/1:11:5,6:5:190:6:229:-17.6595,0,-14.1518 dDocent_Contig_9325 75 . C G 120.191 . AB=0.277778;ABP=10.7311;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=39;DPB=39;DPRA=2.57143;EPP=13.8677;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=205;QR=1340;RO=34;RPL=5;RPP=13.8677;RPPR=76.8404;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:13,5:13:518:5:205:-13.4165,0,-41.5494 0/0:15:15,0:15:595:0:0:0,-4.51545,-53.8884 0/0:5:5,0:5:188:0:0:0,-1.50515,-17.2793 0/0:1:1,0:1:39:0:0:0,-0.30103,-3.89656 dDocent_Contig_9326 19 . T A 1189.5 . AB=0.461538;ABP=4.17955;AC=4;AF=0.5;AN=8;AO=42;CIGAR=1X;DP=91;DPB=91;DPRA=0;EPP=94.2121;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1692;QR=1974;RO=49;RPL=0;RPP=94.2121;RPPR=109.412;RPR=42;RUN=1;SAF=42;SAP=94.2121;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:34:17,17:17:691:17:677:-51.0251,0,-52.2825 0/1:23:15,8:15:604:8:326:-22.7862,0,-47.7747 0/1:29:16,13:16:638:13:526:-38.9566,0,-49.0232 0/1:5:1,4:1:41:4:163:-13.5533,0,-2.58942 dDocent_Contig_9327 7 . A G 361.042 . AB=0.31746;ABP=21.2438;AC=3;AF=0.375;AN=8;AO=20;CIGAR=1X;DP=81;DPB=81;DPRA=1.16667;EPP=46.4397;EPPR=135.47;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=661;QR=2351;RO=61;RPL=0;RPP=46.4397;RPPR=135.47;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=61;SRP=135.47;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:16,11:16:616:11:347:-23.4002,0,-47.6518 0/0:18:18,0:18:698:0:0:0,-5.41854,-63.1542 0/1:17:13,4:13:501:4:135:-7.36397,0,-40.3197 0/1:19:14,5:14:536:5:179:-10.7379,0,-42.8645 dDocent_Contig_9328 108 . A G 53.4502 . AB=0.15;ABP=45.5712;AC=2;AF=0.25;AN=8;AO=6;CIGAR=1X;DP=50;DPB=50;DPRA=4;EPP=16.0391;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=206;QR=1361;RO=44;RPL=0;RPP=16.0391;RPPR=98.5551;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=98.5551;SRR=44;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:16,4:16:459:4:138:-6.73985,0,-35.568 0/1:20:18,2:18:572:2:68:-0.437331,0,-45.7627 0/0:3:3,0:3:100:0:0:0,-0.90309,-9.33053 0/0:7:7,0:7:230:0:0:0,-2.10721,-21.0228 dDocent_Contig_9329 107 . N A 126.483 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=130;QR=0;RO=0;RPL=0;RPP=11.6962;RPPR=0;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:61:-5.79353,-0.60206,0 1/1:2:0,2:0:0:2:69:-6.55266,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_9330 51 . T G 630.904 . AB=0.1;ABP=86.3948;AC=0;AF=0;AN=8;AO=6;CIGAR=19M3D1M1X1M1X3M1X7M1I19M;DP=153;DPB=157.625;DPRA=0;EPP=16.0391;EPPR=81.1833;GTI=0;LEN=1;MEANALT=21;MQM=60;MQMR=60;NS=4;NUMALT=9;ODDS=5.55112e-17;PAIRED=1;PAIREDR=1;PAO=0.311111;PQA=8.72222;PQR=8.72222;PRO=0.311111;QA=193;QR=1254;RO=36;RPL=6;RPP=16.0391;RPPR=81.1833;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:60:15,9,6,0,0,0,0,0,0,5:15:527:9,6,0,0,0,0,0,0,5:321,193,0,0,0,0,0,0,153:-21.6804,0,-40.2258,-10.625,-27.3675,-51.7472,-26.1959,-42.9351,-53.5534,-69.1178,-26.1959,-42.9351,-53.5534,-69.1178,-69.1178,-26.1959,-42.9351,-53.5534,-69.1178,-69.1178,-69.1178,-26.1959,-42.9351,-53.5534,-69.1178,-69.1178,-69.1178,-69.1178,-26.1959,-42.9351,-53.5534,-69.1178,-69.1178,-69.1178,-69.1178,-69.1178,-26.1959,-42.9351,-53.5534,-69.1178,-69.1178,-69.1178,-69.1178,-69.1178,-69.1178,-13.9264,-30.668,-41.2876,-56.853,-56.853,-56.853,-56.853,-56.853,-56.853,-55.3478 0|0:30:9,0,0,5,0,0,3,1,0,0:9:316:0,0,5,0,0,3,1,0,0:0,0,159,0,0,83,17,0,0:-10.1055,-12.8148,-38.5575,-12.8148,-38.5575,-38.5575,0,-25.7512,-25.7512,-24.246,-12.8148,-38.5575,-38.5575,-25.7512,-38.5575,-12.8148,-38.5575,-38.5575,-25.7512,-38.5575,-38.5575,-6.24801,-31.9936,-31.9936,-19.1868,-31.9936,-31.9936,-31.0905,-11.5897,-37.3321,-37.3321,-24.5262,-37.3321,-37.3321,-30.7686,-37.031,-12.8148,-38.5575,-38.5575,-25.7512,-38.5575,-38.5575,-31.9936,-37.3321,-38.5575,-12.8148,-38.5575,-38.5575,-25.7512,-38.5575,-38.5575,-31.9936,-37.3321,-38.5575,-38.5575 0|0:31:7,0,0,0,2,2,0,3,9,0:7:236:0,0,0,2,2,0,3,9,0:0,0,0,64,59,0,95,326,0:-24.546,-26.6532,-45.7896,-26.6532,-45.7896,-45.7896,-26.6532,-45.7896,-45.7896,-45.7896,-21.4938,-40.6315,-40.6315,-40.6315,-40.0294,-21.9462,-41.0834,-41.0834,-41.0834,-35.9252,-40.4813,-26.6532,-45.7896,-45.7896,-45.7896,-40.6315,-41.0834,-45.7896,-19.0045,-38.1428,-38.1428,-38.1428,-32.9844,-33.4365,-38.1428,-37.2397,0,-19.1508,-19.1508,-19.1508,-13.9901,-14.4426,-19.1508,-11.5,-16.4415,-26.6532,-45.7896,-45.7896,-45.7896,-40.6315,-41.0834,-45.7896,-38.1428,-19.1508,-45.7896 0|0:32:5,0,0,0,6,3,3,1,0,3:5:175:0,0,0,6,3,3,1,0,3:0,0,0,194,99,105,36,0,96:-14.1565,-15.6616,-29.9109,-15.6616,-29.9109,-29.9109,-15.6616,-29.9109,-29.9109,-29.9109,0,-14.2541,-14.2541,-14.2541,-12.4479,-7.65131,-21.9028,-21.9028,-21.9028,-6.24397,-20.9997,-7.11011,-21.362,-21.362,-21.362,-5.70267,-13.3527,-20.4589,-12.7212,-26.9713,-26.9713,-26.9713,-11.3137,-18.9628,-18.422,-26.6703,-15.6616,-29.9109,-29.9109,-29.9109,-14.2541,-21.9028,-21.362,-26.9713,-29.9109,-7.92258,-22.1738,-22.1738,-22.1738,-6.5153,-14.1649,-13.6239,-19.2339,-22.1738,-21.2707 dDocent_Contig_9331 66 . T C 182.484 . AB=0.32;ABP=10.0459;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=66;DPB=66;DPRA=1.82927;EPP=20.3821;EPPR=128.956;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=298;QR=2171;RO=58;RPL=8;RPP=20.3821;RPPR=128.956;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:17,8:17:650:8:298:-19.6461,0,-51.3103 0/0:20:20,0:20:758:0:0:0,-6.0206,-68.5473 0/0:19:19,0:19:685:0:0:0,-5.71957,-61.964 0/0:2:2,0:2:78:0:0:0,-0.60206,-7.40347 dDocent_Contig_9333 21 . G T 97.9787 . AB=0.133333;ABP=73.0765;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=162;DPB=162;DPRA=1.76471;EPP=20.3821;EPPR=337.417;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=321;QR=6194;RO=154;RPL=0;RPP=20.3821;RPPR=337.417;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=154;SRP=337.417;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:60:52,8:52:2092:8:321:-11.1958,0,-170.398 0/0:66:66,0:66:2658:0:0:0,-19.868,-239.339 0/0:22:22,0:22:877:0:0:0,-6.62266,-79.2389 0/0:14:14,0:14:567:0:0:0,-4.21442,-51.3723 dDocent_Contig_9334 107 . N T 157.124 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=5;CIGAR=1X;DP=5;DPB=5;DPRA=0;EPP=13.8677;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=164;QR=0;RO=0;RPL=0;RPP=13.8677;RPPR=0;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:99:-9.2373,-0.90309,0 1/1:2:0,2:0:0:2:65:-6.17329,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_9335 179 . G T 170.909 . AB=0.333333;ABP=8.07707;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X1M1X;DP=85;DPB=85;DPRA=0.65625;EPP=18.2106;EPPR=172.385;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=273;QR=3044;RO=78;RPL=7;RPP=18.2106;RPPR=172.385;RPR=0;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=172.385;SRR=78;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:21:14,7:14:538:7:273:-18.6138,0,-42.434 0|0:49:49,0:49:1917:0:0:0,-14.7505,-172.753 0|0:15:15,0:15:589:0:0:0,-4.51545,-53.3517 .:.:.:.:.:.:.:. dDocent_Contig_9336 7 . A T 189.947 . AB=0.3;ABP=13.4334;AC=2;AF=0.25;AN=8;AO=9;CIGAR=1X;DP=53;DPB=53;DPRA=1.30435;EPP=22.5536;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=341;QR=1679;RO=44;RPL=0;RPP=22.5536;RPPR=98.5551;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:5,5:5:182:5:191:-14.5481,0,-13.7228 0/1:20:16,4:16:620:4:150:-7.84451,0,-50.1194 0/0:13:13,0:13:489:0:0:0,-3.91339,-44.3541 0/0:10:10,0:10:388:0:0:0,-3.0103,-35.278 dDocent_Contig_9337 67 . A T 302.489 . AB=0.326531;ABP=15.8176;AC=2;AF=0.333333;AN=6;AO=16;CIGAR=1X;DP=82;DPB=82;DPRA=0.742424;EPP=37.7539;EPPR=146.327;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=532;QR=2229;RO=66;RPL=16;RPP=37.7539;RPPR=146.327;RPR=0;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=66;SRP=146.327;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:26,10:26:881:10:342:-20.2741,0,-68.766 0/0:33:33,0:33:1115:0:0:0,-9.93399,-100.654 0/1:13:7,6:7:233:6:190:-13.4977,0,-17.3826 ./.:.:.:.:.:.:.:. dDocent_Contig_9338 9 . T A 1991.3 . AB=0.555556;ABP=6.38815;AC=4;AF=0.5;AN=8;AO=70;CIGAR=1X8M;DP=126;DPB=125.556;DPRA=0;EPP=155.013;EPPR=105.07;GTI=0;LEN=1;MEANALT=2;MQM=59.6143;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=0.885714;PAIREDR=0.957447;PAO=0;PQA=0;PQR=0;PRO=0;QA=2680;QR=1857;RO=47;RPL=0;RPP=155.013;RPPR=105.07;RPR=70;RUN=1;SAF=70;SAP=155.013;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:29:14,3,11,1:14:559:3,11,1:118,426,34:-30.7946,-25.3887,-70.5374,0,-36.4466,-42.7532,-32.5261,-68.9556,-43.5813,-78.2727 0|1:44:19,0,25,0:19:745:0,25,0:0,959,0:-73.3599,-79.0794,-140.35,0,-61.6583,-54.1326,-79.0794,-140.35,-61.6583,-140.35 0|1:33:9,1,19,4:9:354:1,19,4:40,724,164:-56.667,-56.306,-85.1283,0,-26.0574,-23.4071,-46.7336,-72.7875,-16.4867,-74.6535 0|1:20:5,0,15,0:5:199:0,15,0:0,571,0:-45.706,-47.2112,-63.6017,0,-16.7838,-12.2683,-47.2112,-63.6017,-16.7838,-63.6017 dDocent_Contig_9339 82 . T A 57.3967 . AB=0.190476;ABP=20.4855;AC=2;AF=0.25;AN=8;AO=4;CIGAR=1X;DP=81;DPB=81;DPRA=0.35;EPP=11.6962;EPPR=170.214;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=152;QR=3074;RO=77;RPL=4;RPP=11.6962;RPPR=170.214;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=77;SRP=170.214;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:19:19,0:19:768:0:0:0,-5.71957,-69.4407 0/0:41:41,0:41:1628:0:0:0,-12.3422,-146.749 0/1:10:7,3:7:276:3:112:-7.43342,0,-22.197 0/1:11:10,1:10:402:1:40:-0.684349,0,-33.2267 dDocent_Contig_9340 26 . T C 375.868 . AB=0.269841;ABP=31.9977;AC=2;AF=0.25;AN=8;AO=18;CIGAR=1X;DP=140;DPB=140;DPRA=0.48538;EPP=42.0968;EPPR=261.416;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=664;QR=4445;RO=119;RPL=0;RPP=42.0968;RPPR=261.416;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=119;SRP=261.416;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:42:27,15:27:987:15:570:-38.978,0,-76.4891 0/0:57:56,0:56:2133:0:0:0,-16.8577,-192.084 0/1:21:19,2:19:722:2:75:-0.797174,0,-58.9857 0/0:20:17,1:17:603:1:19:0,-3.68524,-52.7066 dDocent_Contig_9341 25 . C T 901.852 . AB=0.5;ABP=3.0103;AC=4;AF=0.5;AN=8;AO=33;CIGAR=1X;DP=66;DPB=66;DPRA=0;EPP=74.6689;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.969697;PAIREDR=0.939394;PAO=0;PQA=0;PQR=0;PRO=0;QA=1289;QR=1308;RO=33;RPL=0;RPP=74.6689;RPPR=74.6689;RPR=33;RUN=1;SAF=33;SAP=74.6689;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:7,8:7:283:8:319:-24.5614,0,-21.3279 0/1:18:8,10:8:318:10:389:-29.9462,0,-23.5665 0/1:22:15,7:15:588:7:270:-18.0355,0,-46.6316 0/1:11:3,8:3:119:8:311:-25.0401,0,-7.78385 dDocent_Contig_9342 69 . G A 78.9942 . AB=0.357143;ABP=5.49198;AC=2;AF=0.25;AN=8;AO=6;CIGAR=1X;DP=59;DPB=59;DPRA=1.85185;EPP=16.0391;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=195;QR=1908;RO=53;RPL=6;RPP=16.0391;RPPR=118.098;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:9:9,0:9:331:0:0:0,-2.70927,-30.1407 0/0:36:35,1:35:1272:1:30:0,-7.83751,-111.783 0/1:10:7,3:7:233:3:95:-5.85428,0,-18.2806 0/1:4:2,2:2:72:2:70:-5.443,0,-5.63252 dDocent_Contig_9343 61 . C T 2789.97 . AB=0.0353982;ABP=214.873;AC=0;AF=0;AN=8;AO=4;CIGAR=4X;DP=192;DPB=192;DPRA=0;EPP=11.6962;EPPR=194.1;GTI=0;LEN=1;MEANALT=2.5;MQM=40;MQMR=60;NS=4;NUMALT=2;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=156;QR=3438;RO=88;RPL=4;RPP=11.6962;RPPR=194.1;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=88;SRP=194.1;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:40:21,2,16:21:822:2,16:77,640:-46.4049,-46.4057,-113.384,0,-61.2642,-62.7696 0|0:64:29,0,32:29:1141:0,32:0,1278:-96.5463,-105.276,-199.132,0,-93.8695,-84.2365 0|0:73:33,2,38:33:1278:2,38:79,1483:-112.143,-119.097,-223.47,0,-102.174,-93.7139 0|0:15:5,0,10:5:197:0,10:0,394:-31.301,-32.8062,-49.0133,0,-16.6007,-13.5904 dDocent_Contig_9344 11 . G T 60.9033 . AB=0.375;ABP=4.09604;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=85;DPB=85;DPRA=0.311688;EPP=9.52472;EPPR=181.071;GTI=0;LEN=1;MEANALT=1;MQM=44;MQMR=59.0976;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.902439;PAO=0;PQA=0;PQR=0;PRO=0;QA=113;QR=3272;RO=82;RPL=0;RPP=9.52472;RPPR=181.071;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=82;SRP=181.071;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:27:27,0:27:1093:0:0:0,-8.12781,-98.6541 0/0:24:24,0:24:946:0:0:0,-7.22472,-85.3779 0/0:26:26,0:26:1050:0:0:0,-7.82678,-94.6334 0/1:8:5,3:5:183:3:113:-7.7893,0,-14.3593 dDocent_Contig_9345 72 . A C 56.2996 . AB=0.222222;ABP=15.074;AC=2;AF=0.25;AN=8;AO=4;CIGAR=1X;DP=45;DPB=45;DPRA=0.666667;EPP=11.6962;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.95122;PAO=0;PQA=0;PQR=0;PRO=0;QA=152;QR=1472;RO=41;RPL=4;RPP=11.6962;RPPR=92.0407;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:13:13,0:13:486:0:0:0,-3.91339,-44.082 0/0:14:14,0:14:523:0:0:0,-4.21442,-47.4077 0/1:15:12,3:12:388:3:113:-6.02352,0,-30.7134 0/1:3:2,1:2:75:1:39:-2.99347,0,-6.21701 dDocent_Contig_9346 98 . N A 121.146 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=7.37776;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=131;QR=0;RO=0;RPL=4;RPP=11.6962;RPPR=0;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:4:0,4:0:0:4:131:-12.1143,-1.20412,0 ./.:.:.:.:.:.:.:. dDocent_Contig_9347 19 . T A 3415.08 . AB=0.415541;ABP=21.3504;AC=4;AF=0.5;AN=8;AO=123;CIGAR=1X;DP=296;DPB=296;DPRA=0;EPP=270.101;EPPR=376.504;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4856;QR=6893;RO=172;RPL=0;RPP=270.101;RPPR=376.504;RPR=123;RUN=1;SAF=123;SAP=270.101;SAR=0;SRF=172;SRP=376.504;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:70:31,39:31:1242:39:1553:-118.931,0,-90.9752 0/1:54:37,16:37:1475:16:639:-41.4772,0,-116.629 0/1:103:63,40:63:2512:40:1591:-112.423,0,-195.203 0/1:69:41,28:41:1664:28:1073:-76.0752,0,-129.209 dDocent_Contig_9348 125 . T C 608.096 . AB=0.4375;ABP=5.18177;AC=4;AF=0.5;AN=8;AO=28;CIGAR=1X;DP=64;DPB=64;DPRA=0;EPP=63.8115;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.892857;PAIREDR=0.972222;PAO=0;PQA=0;PQR=0;PRO=0;QA=957;QR=1203;RO=36;RPL=0;RPP=63.8115;RPPR=81.1833;RPR=28;RUN=1;SAF=0;SAP=63.8115;SAR=28;SRF=0;SRP=81.1833;SRR=36;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:6,10:6:202:10:331:-25.2938,0,-13.6941 0/1:23:15,8:15:499:8:277:-18.3433,0,-38.3048 0/1:11:8,3:8:277:3:105:-6.48483,0,-21.9555 0/1:14:7,7:7:225:7:244:-18.0856,0,-16.3513 dDocent_Contig_9349 32 . A G 67.3183 . AB=0;ABP=0;AC=2;AF=0.333333;AN=6;AO=2;CIGAR=1X1M1X;DP=6;DPB=6;DPRA=2;EPP=7.35324;EPPR=7.35324;GTI=0;LEN=1;MEANALT=2;MQM=40;MQMR=60;NS=3;NUMALT=1;ODDS=8.67362e-19;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=71;QR=66;RO=2;RPL=0;RPP=7.35324;RPPR=7.35324;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=2;SRP=7.35324;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. 0|0:2:2,0:2:66:0:0:0,-0.60206,-6.26795 0|0:1:0,0:0:0:0:0:0,0,0 1|1:3:0,2:0:0:2:71:-6.12814,-0.60206,0 dDocent_Contig_9350 15 . T G 947.143 . AB=0.188889;ABP=230.002;AC=4;AF=0.5;AN=8;AO=51;CIGAR=1X2M1X;DP=270;DPB=270;DPRA=0;EPP=113.755;EPPR=472.048;GTI=0;LEN=1;MEANALT=1.75;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.777778;PAO=0;PQA=0;PQR=0;PRO=0;QA=2020;QR=8519;RO=216;RPL=0;RPP=113.755;RPPR=472.048;RPR=51;RUN=1;SAF=51;SAP=113.755;SAR=0;SRF=216;SRP=472.048;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:84:61,23:61:2429:23:909:-56.8312,0,-193.479 0|1:118:105,11:105:4116:11:433:-4.09842,0,-335.236 0|1:61:45,15:45:1773:15:596:-35.5093,0,-141.323 0|1:7:5,2:5:201:2:82:-5.67247,0,-16.3637 dDocent_Contig_9351 95 . G A 738.105 . AB=0.360465;ABP=17.5541;AC=5;AF=0.625;AN=8;AO=34;CIGAR=1X;DP=89;DPB=89;DPRA=0;EPP=76.8404;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1153;QR=1801;RO=55;RPL=34;RPP=76.8404;RPPR=122.441;RPR=0;RUN=1;SAF=34;SAP=76.8404;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:18,11:18:562:11:354:-23.4417,0,-42.1455 0/1:27:13,14:13:436:14:487:-36.0333,0,-31.4339 0/1:30:24,6:24:803:6:207:-9.93719,0,-63.5504 1/1:3:0,3:0:0:3:105:-9.79616,-0.90309,0 dDocent_Contig_9352 145 . C T 829.883 . AB=0.159091;ABP=47.4268;AC=1;AF=0.125;AN=8;AO=7;CIGAR=2X;DP=62;DPB=62;DPRA=0;EPP=18.2106;EPPR=59.4686;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.961538;PAO=0;PQA=0;PQR=0;PRO=0;QA=279;QR=1046;RO=26;RPL=0;RPP=18.2106;RPPR=59.4686;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=59.4686;SRR=26;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:8:6,1,1:6:238:1,1:40,41:-1.58284,-0.0988881,-19.3767,0,-16.2917,-19.2862 0|0:18:10,0,8:10:405:0,8:0,326:-24.2913,-27.3016,-60.6957,0,-33.7999,-31.3917 0|0:26:7,3,16:7:285:3,16:118,646:-51.1551,-43.5578,-66.1663,0,-13.8181,-18.7037 1|0:10:3,3,4:3:118:3,4:121,163:-12.8246,-3.75519,-12.5523,-0.277993,0,-8.77509 dDocent_Contig_9353 17 . G C 187.578 . AB=0.333333;ABP=8.80089;AC=2;AF=0.25;AN=8;AO=8;CIGAR=1X;DP=49;DPB=49;DPRA=0.96;EPP=20.3821;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=318;QR=1626;RO=41;RPL=0;RPP=20.3821;RPPR=92.0407;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:20:20,0:20:790:0:0:0,-6.0206,-71.419 0/1:13:10,3:10:401:3:117:-6.9959,0,-32.5365 0/1:11:6,5:6:239:5:201:-15.1598,0,-18.5711 0/0:5:5,0:5:196:0:0:0,-1.50515,-18.0143 dDocent_Contig_9355 32 . G A 357.054 . AB=0.3125;ABP=17.6677;AC=3;AF=0.375;AN=8;AO=16;CIGAR=1X2M;DP=66;DPB=66;DPRA=0;EPP=37.7539;EPPR=105.07;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.9375;PAIREDR=0.595745;PAO=0;PQA=0;PQR=0;PRO=0;QA=640;QR=1807;RO=47;RPL=0;RPP=37.7539;RPPR=105.07;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:18:17,0,1:17:658:0,1:0,41:0,-5.11751,-59.1414,-1.32397,-55.7561,-55.455 0|1:23:17,0,6:17:643:0,6:0,240:-15.052,-20.1695,-72.8506,0,-53.0751,-51.2689 0|1:11:4,3,4:4:158:3,4:119,158:-11.7956,-3.20331,-15.3022,0,-3.20461,-11.7969 0|1:14:9,0,5:9:348:0,5:0,201:-14.2556,-16.9649,-45.5392,0,-28.9704,-27.4652 dDocent_Contig_9356 110 . G A 487.632 . AB=0.322917;ABP=29.1584;AC=4;AF=0.5;AN=8;AO=31;CIGAR=1X;DP=96;DPB=96;DPRA=0;EPP=70.3259;EPPR=139.813;GTI=0;LEN=1;MEANALT=1.25;MQM=55.6129;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.984127;PAO=0;PQA=0;PQR=0;PRO=0;QA=927;QR=2157;RO=63;RPL=0;RPP=70.3259;RPPR=139.813;RPR=31;RUN=1;SAF=0;SAP=70.3259;SAR=31;SRF=0;SRP=139.813;SRR=63;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:33:20,13:20:693:13:381:-24.5946,0,-52.7594 0/1:41:29,10:29:986:10:298:-15.2577,0,-77.2211 0/1:16:12,4:12:408:4:125:-6.74077,0,-32.231 0/1:6:2,4:2:70:4:123:-9.56793,0,-4.84122 dDocent_Contig_9357 10 . T A 551.718 . AB=0.226087;ABP=77.9544;AC=2;AF=0.25;AN=8;AO=26;CIGAR=1X1M1X1M1X;DP=207;DPB=207;DPRA=1.25;EPP=59.4686;EPPR=393.875;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1029;QR=7175;RO=180;RPL=0;RPP=59.4686;RPPR=393.875;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=180;SRP=393.875;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:90:69,20:69:2733:20:799:-45.0301,0,-218.904 0|0:85:85,0:85:3400:0:0:0,-25.5875,-306.061 0|1:25:19,6:19:756:6:230:-13.5397,0,-60.8382 0|0:7:7,0:7:286:0:0:0,-2.10721,-26.1148 dDocent_Contig_9358 119 . A T 146.495 . AB=0.666667;ABP=5.18177;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=99;DPB=99;DPRA=0.3;EPP=16.0391;EPPR=204.957;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=208;QR=3304;RO=93;RPL=0;RPP=16.0391;RPPR=204.957;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=204.957;SRR=93;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:34:34,0:34:1199:0:0:0,-10.235,-108.206 0/0:44:44,0:44:1580:0:0:0,-13.2453,-142.482 0/0:12:12,0:12:417:0:0:0,-3.61236,-37.859 0/1:9:3,6:3:108:6:208:-16.3484,0,-7.36581 dDocent_Contig_9360 19 . C T 627.881 . AB=0.44;ABP=4.57376;AC=1;AF=0.125;AN=8;AO=27;CIGAR=1X;DP=195;DPB=195;DPRA=1.25203;EPP=61.6401;EPPR=367.818;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.666667;PAIREDR=0.934524;PAO=0;PQA=0;PQR=0;PRO=0;QA=1081;QR=6744;RO=168;RPL=0;RPP=61.6401;RPPR=367.818;RPR=27;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=168;SRP=367.818;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:50:28,22:28:1116:22:877:-64.1861,0,-85.6733 0/0:47:45,2:45:1790:2:82:0,-6.36873,-153.533 0/0:57:54,3:54:2185:3:122:0,-5.78622,-185.442 0/0:41:41,0:41:1653:0:0:0,-12.3422,-148.995 dDocent_Contig_9361 21 . C G 89.7248 . AB=0.2;ABP=22.5536;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=61;DPB=61;DPRA=2.08333;EPP=13.8677;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.982143;PAO=0;PQA=0;PQR=0;PRO=0;QA=198;QR=2256;RO=56;RPL=0;RPP=13.8677;RPPR=124.613;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:16:16,0:16:651:0:0:0,-4.81648,-58.9229 0/1:25:20,5:20:799:5:198:-10.6714,0,-64.6993 0/0:15:15,0:15:602:0:0:0,-4.51545,-54.514 0/0:5:5,0:5:204:0:0:0,-1.50515,-18.744 dDocent_Contig_9362 7 . A T 78.1701 . AB=0;ABP=0;AC=2;AF=0.25;AN=8;AO=2;CIGAR=1M1I1X;DP=56;DPB=57;DPRA=0.111111;EPP=7.35324;EPPR=120.27;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=76;QR=2062;RO=54;RPL=0;RPP=7.35324;RPPR=120.27;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:2:0,2:0:0:2:76:-7.21467,-0.60206,0 0|0:15:15,0:15:577:0:0:0,-4.51545,-52.2726 0|0:19:19,0:19:726:0:0:0,-5.71957,-65.6666 0|0:20:20,0:20:759:0:0:0,-6.0206,-68.6382 dDocent_Contig_9363 16 . C T 231.944 . AB=0.5;ABP=3.0103;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=43;DPB=43;DPRA=1.77778;EPP=20.3821;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.2286;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.657143;PAO=0;PQA=0;PQR=0;PRO=0;QA=326;QR=1359;RO=35;RPL=0;RPP=20.3821;RPPR=79.0118;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:9:9,0:9:354:0:0:0,-2.70927,-31.5891 0/0:7:7,0:7:262:0:0:0,-2.10721,-23.9273 0/1:16:8,8:8:311:8:326:-24.8934,0,-23.5349 0/0:11:11,0:11:432:0:0:0,-3.31133,-39.228 dDocent_Contig_9364 8 . T A 171.687 . AB=0.2;ABP=42.0968;AC=2;AF=0.25;AN=8;AO=10;CIGAR=1X2M2D1M;DP=223;DPB=219.667;DPRA=0.289017;EPP=24.725;EPPR=463.362;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.990566;PAO=0;PQA=0;PQR=0;PRO=0;QA=370;QR=8307;RO=212;RPL=0;RPP=24.725;RPPR=463.362;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=212;SRP=463.362;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:95:94,0:94:3683:0:0:0,-28.2968,-331.134 0|0:78:78,0:78:3052:0:0:0,-23.4803,-274.809 0|1:23:21,2:21:825:2:74:-0.102186,0,-67.6458 0|1:27:19,8:19:747:8:296:-18.8663,0,-59.4308 dDocent_Contig_9365 202 . G A 62.3689 . AB=0.375;ABP=4.09604;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=29;DPB=29;DPRA=0.761905;EPP=9.52472;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.961538;PAO=0;PQA=0;PQR=0;PRO=0;QA=109;QR=922;RO=26;RPL=3;RPP=9.52472;RPPR=59.4686;RPR=0;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=59.4686;SRR=26;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:8:5,3:5:181:3:109:-7.75976,0,-14.2352 0/0:14:14,0:14:502:0:0:0,-4.21442,-45.5163 ./.:.:.:.:.:.:.:. 0/0:7:7,0:7:239:0:0:0,-2.10721,-21.8424 dDocent_Contig_9366 72 . G A 580.153 . AB=0.666667;ABP=10.2485;AC=1;AF=0.125;AN=8;AO=20;CIGAR=1X;DP=81;DPB=81;DPRA=1.76471;EPP=46.4397;EPPR=135.47;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=757;QR=2334;RO=61;RPL=20;RPP=46.4397;RPPR=135.47;RPR=0;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=61;SRP=135.47;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:10,20:10:394:20:757:-59.4132,0,-26.7865 0/0:30:30,0:30:1147:0:0:0,-9.0309,-103.526 0/0:11:11,0:11:417:0:0:0,-3.31133,-37.8779 0/0:10:10,0:10:376:0:0:0,-3.0103,-34.1848 dDocent_Contig_9367 115 . G A 427.522 . AB=0.666667;ABP=9.52472;AC=2;AF=0.25;AN=8;AO=18;CIGAR=1X;DP=60;DPB=60;DPRA=0.818182;EPP=42.0968;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=596;QR=1462;RO=42;RPL=0;RPP=42.0968;RPPR=94.2121;RPR=18;RUN=1;SAF=0;SAP=42.0968;SAR=18;SRF=0;SRP=94.2121;SRR=42;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:9:9,0:9:315:0:0:0,-2.70927,-28.6888 0/0:24:24,0:24:834:0:0:0,-7.22472,-75.3785 0/1:14:3,11:3:104:11:367:-29.1335,0,-5.48867 0/1:13:6,7:6:209:7:229:-17.0165,0,-15.2377 dDocent_Contig_9368 7 . A T 3236.49 . AB=0.645349;ABP=34.5724;AC=4;AF=0.5;AN=8;AO=111;CIGAR=1X;DP=172;DPB=172;DPRA=0;EPP=244.044;EPPR=135.47;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.900901;PAIREDR=0.95082;PAO=0;PQA=0;PQR=0;PRO=0;QA=4240;QR=2276;RO=61;RPL=0;RPP=244.044;RPPR=135.47;RPR=111;RUN=1;SAF=111;SAP=244.044;SAR=0;SRF=61;SRP=135.47;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:44:17,27:17:633:27:1036:-80.3036,0,-44.0571 0/1:44:18,26:18:690:26:977:-74.9941,0,-49.1882 0/1:67:20,47:20:752:47:1806:-142.623,0,-47.836 0/1:17:6,11:6:201:11:421:-33.1256,0,-13.2987 dDocent_Contig_9370 10 . T G 567.464 . AB=0.18232;ABP=161.672;AC=4;AF=0.5;AN=8;AO=33;CIGAR=1X;DP=181;DPB=181;DPRA=0;EPP=74.6689;EPPR=324.388;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=0.939189;PAO=0;PQA=0;PQR=0;PRO=0;QA=1302;QR=5964;RO=148;RPL=0;RPP=74.6689;RPPR=324.388;RPR=33;RUN=1;SAF=33;SAP=74.6689;SAR=0;SRF=148;SRP=324.388;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:61:53,8:53:2147:8:312:-10.0789,0,-175.035 0/1:39:29,10:29:1172:10:402:-24.7981,0,-94.0142 0/1:66:54,12:54:2169:12:469:-22.6882,0,-175.513 0/1:15:12,3:12:476:3:119:-6.57905,0,-38.6731 dDocent_Contig_9371 22 . T C 210.813 . AB=0.238095;ABP=28.0339;AC=2;AF=0.25;AN=8;AO=10;CIGAR=1X;DP=75;DPB=75;DPRA=1.27273;EPP=24.725;EPPR=144.156;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.984615;PAO=0;PQA=0;PQR=0;PRO=0;QA=404;QR=2611;RO=65;RPL=0;RPP=24.725;RPPR=144.156;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=65;SRP=144.156;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:25,4:25:996:4:160:-6.05356,0,-81.2048 0/0:31:31,0:31:1251:0:0:0,-9.33193,-112.859 0/1:13:7,6:7:282:6:244:-18.4254,0,-21.839 0/0:2:2,0:2:82:0:0:0,-0.60206,-7.77968 dDocent_Contig_9372 10 . T C 2075.68 . AB=0.533835;ABP=4.33278;AC=4;AF=0.5;AN=8;AO=71;CIGAR=1X;DP=133;DPB=133;DPRA=0;EPP=157.185;EPPR=137.642;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.943662;PAIREDR=0.935484;PAO=0;PQA=0;PQR=0;PRO=0;QA=2819;QR=2489;RO=62;RPL=0;RPP=157.185;RPPR=137.642;RPR=71;RUN=1;SAF=71;SAP=157.185;SAR=0;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:52:25,27:25:1001:27:1053:-79.3963,0,-74.7341 0/1:37:8,29:8:322:29:1163:-93.8083,0,-18.2091 0/1:20:14,6:14:558:6:237:-15.6814,0,-44.5389 0/1:24:15,9:15:608:9:366:-26.0804,0,-47.8326 dDocent_Contig_9373 171 . C A 260.53 . AB=0.309524;ABP=16.2459;AC=2;AF=0.25;AN=8;AO=15;CIGAR=1X;DP=92;DPB=92;DPRA=0.893333;EPP=4.31318;EPPR=88.3181;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=57.5974;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.948052;PAO=0;PQA=0;PQR=0;PRO=0;QA=532;QR=2821;RO=77;RPL=9;RPP=4.31318;RPPR=94.6352;RPR=6;RUN=1;SAF=0;SAP=35.5824;SAR=15;SRF=1;SRP=161.641;SRR=76;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:32:22,10:22:771:10:352:-22.3859,0,-60.0628 0/0:25:23,2:23:873:2:72:0,-0.689027,-64.3654 0/0:25:25,0:25:912:0:0:0,-7.52575,-81.0179 0/1:10:7,3:7:265:3:108:-7.06487,0,-21.1972 dDocent_Contig_9374 7 . A G 106.73 . AB=0.133929;ABP=133.376;AC=3;AF=0.375;AN=8;AO=15;CIGAR=1X;DP=121;DPB=121;DPRA=4.14815;EPP=35.5824;EPPR=233.186;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=534;QR=4030;RO=106;RPL=0;RPP=35.5824;RPPR=233.186;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=106;SRP=233.186;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:23,6:23:889:6:226:-11.9714,0,-71.5995 0/1:30:27,3:27:1037:3:115:-1.69399,0,-84.6083 0/1:53:47,6:47:1773:6:193:-1.72867,0,-143.869 0/0:9:9,0:9:331:0:0:0,-2.70927,-30.139 dDocent_Contig_9375 9 . T C 2061.75 . AB=0.566929;ABP=7.95168;AC=4;AF=0.5;AN=8;AO=72;CIGAR=1X;DP=127;DPB=127;DPRA=0;EPP=159.356;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2783;QR=2093;RO=55;RPL=0;RPP=159.356;RPPR=122.441;RPR=72;RUN=1;SAF=72;SAP=159.356;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:4,16:4:156:16:618:-49.9394,0,-8.39669 0/1:27:9,18:9:342:18:702:-55.3862,0,-23.0068 0/1:45:31,14:31:1193:14:541:-35.489,0,-94.1209 0/1:35:11,24:11:402:24:922:-72.7588,0,-25.9812 dDocent_Contig_9376 13 . T C 367.127 . AB=0.116788;ABP=177.758;AC=4;AF=0.5;AN=8;AO=16;CIGAR=1X4M;DP=137;DPB=137;DPRA=0;EPP=37.7539;EPPR=239.701;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.4375;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=632;QR=4324;RO=109;RPL=0;RPP=37.7539;RPPR=239.701;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=109;SRP=239.701;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:57:50,2,5:50:1970:2,5:80,196:-1.05929,-9.51835,-170.984,0,-155.469,-160.555 0|1:45:40,1,4:40:1590:1,4:40,158:-0.95608,-9.7012,-140.307,0,-127.607,-129.698 0|1:20:10,8,1:10:404:8,1:315,41:-22.902,0,-30.906,-22.5265,-29.9295,-55.5384 0|1:15:9,0,6:9:360:0,6:0,237:-17.1869,-19.8962,-49.5547,0,-30.0551,-28.2489 dDocent_Contig_9377 19 . T C 50.1394 . AB=0.190476;ABP=20.4855;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=278;DPB=278;DPRA=0.245136;EPP=3.0103;EPPR=572.221;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.8358;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=0;PAIREDR=0.492701;PAO=0;PQA=0;PQR=0;PRO=0;QA=141;QR=10913;RO=274;RPL=0;RPP=11.6962;RPPR=597.994;RPR=4;RUN=1;SAF=2;SAP=3.0103;SAR=2;SRF=271;SRP=572.221;SRR=3;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:112:112,0:112:4456:0:0:0,-33.7154,-400.808 0/0:86:86,0:86:3459:0:0:0,-25.8886,-311.336 0/0:59:59,0:59:2317:0:0:0,-17.7608,-208.689 0/1:21:17,4:17:681:4:141:-6.71291,0,-55.2977 dDocent_Contig_9378 107 . N C 499.074 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=18;CIGAR=1X;DP=19;DPB=19;DPRA=0;EPP=42.0968;EPPR=0;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=537;QR=0;RO=0;RPL=0;RPP=42.0968;RPPR=0;RPR=18;RUN=1;SAF=0;SAP=42.0968;SAR=18;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:4:0,3:0:0:3:103:-9.47172,-0.90309,0 1/1:11:0,11:0:0:11:339:-30.8094,-3.31133,0 1/1:2:0,2:0:0:2:59:-5.60384,-0.60206,0 1/1:2:0,2:0:0:2:36:-3.41967,-0.60206,0 dDocent_Contig_9379 8 . T A 90.8364 . AB=0.318182;ABP=9.32731;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=61;DPB=61;DPRA=3.06667;EPP=20.3821;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=27.875;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=309;QR=2042;RO=53;RPL=0;RPP=20.3821;RPPR=118.098;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:15,7:15:575:7:272:-10.4816,0,-45.4682 0/0:6:6,0:6:230:0:0:0,-1.80618,-21.0668 0/0:24:23,1:23:890:1:37:0,-4.0011,-77.1959 0/0:9:9,0:9:347:0:0:0,-2.70927,-31.5893 dDocent_Contig_9380 56 . C T 295.231 . AB=0.44;ABP=3.79203;AC=2;AF=0.25;AN=8;AO=13;CIGAR=1X;DP=124;DPB=124;DPRA=0.527778;EPP=31.2394;EPPR=244.044;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=523;QR=4448;RO=111;RPL=13;RPP=31.2394;RPPR=244.044;RPR=0;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=111;SRP=244.044;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:48:48,0:48:1929:0:0:0,-14.4494,-173.806 0/0:51:49,2:49:1975:2:82:0,-7.57285,-170.162 0/1:10:3,7:3:103:7:280:-22.5613,0,-6.59387 0/1:15:11,4:11:441:4:161:-10.3598,0,-35.5283 dDocent_Contig_9381 32 . G T 60.5857 . AB=0.25;ABP=11.6962;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=58;DPB=58;DPRA=1.14286;EPP=11.6962;EPPR=120.27;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.944444;PAO=0;PQA=0;PQR=0;PRO=0;QA=136;QR=2159;RO=54;RPL=0;RPP=11.6962;RPPR=120.27;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:11,0:11:449:0:0:0,-3.31133,-40.7659 0/1:16:12,4:12:481:4:136:-7.75754,0,-38.8246 0/0:19:19,0:19:766:0:0:0,-5.71957,-69.2609 0/0:12:12,0:12:463:0:0:0,-3.61236,-42.006 dDocent_Contig_9382 33 . G A 2464.83 . AB=0.488889;ABP=3.20332;AC=4;AF=0.5;AN=8;AO=88;CIGAR=2X;DP=180;DPB=180;DPRA=0;EPP=194.1;EPPR=202.786;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.988636;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3409;QR=3563;RO=92;RPL=0;RPP=194.1;RPPR=202.786;RPR=88;RUN=1;SAF=88;SAP=194.1;SAR=0;SRF=92;SRP=202.786;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:65:30,35:30:1150:35:1343:-101.573,0,-84.2121 0|1:49:14,35:14:540:35:1366:-108.463,0,-34.1871 0|1:37:29,8:29:1124:8:306:-16.7607,0,-90.3105 0|1:29:19,10:19:749:10:394:-27.085,0,-59.003 dDocent_Contig_9383 78 . C A 64.9405 . AB=0.178571;ABP=28.1373;AC=2;AF=0.25;AN=8;AO=6;CIGAR=1X;DP=70;DPB=70;DPRA=3;EPP=16.0391;EPPR=141.985;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=231;QR=2452;RO=64;RPL=6;RPP=16.0391;RPPR=141.985;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=64;SRP=141.985;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:7:7,0:7:273:0:0:0,-2.10721,-24.938 0/1:14:12,2:12:468:2:78:-3.18905,0,-38.2581 0/0:35:34,1:34:1320:1:36:0,-6.93777,-115.488 0/1:14:11,3:11:391:3:117:-6.69596,0,-31.3058 dDocent_Contig_9384 35 . G A 37.857 . AB=0.285714;ABP=5.80219;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X;DP=96;DPB=96;DPRA=0.235955;EPP=7.35324;EPPR=207.129;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=80;QR=3774;RO=94;RPL=0;RPP=7.35324;RPPR=207.129;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=94;SRP=207.129;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:61:61,0:61:2457:0:0:0,-18.3628,-221.267 0/0:22:22,0:22:879:0:0:0,-6.62266,-79.4184 0/1:7:5,2:5:204:2:80:-5.48458,0,-16.6368 0/0:6:6,0:6:234:0:0:0,-1.80618,-21.4296 dDocent_Contig_9385 66 . C G 57.8296 . AB=0.12069;ABP=75.4926;AC=2;AF=0.25;AN=8;AO=7;CIGAR=1X;DP=102;DPB=102;DPRA=1.31818;EPP=18.2106;EPPR=209.3;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.9053;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.968421;PAO=0;PQA=0;PQR=0;PRO=0;QA=275;QR=3736;RO=95;RPL=7;RPP=18.2106;RPPR=209.3;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=95;SRP=209.3;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:18:18,0:18:694:0:0:0,-5.41854,-62.7845 0/0:26:26,0:26:999:0:0:0,-7.82678,-90.1975 0/1:35:30,5:30:1199:5:196:-7.47788,0,-97.6517 0/1:23:21,2:21:844:2:79:-0.573555,0,-69.3316 dDocent_Contig_9387 61 . G A 1311.35 . AB=0.344828;ABP=33.336;AC=3;AF=0.375;AN=8;AO=50;CIGAR=1X;DP=171;DPB=171;DPRA=1.85897;EPP=111.584;EPPR=265.758;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1991;QR=4770;RO=121;RPL=50;RPP=111.584;RPPR=265.758;RPR=0;RUN=1;SAF=50;SAP=111.584;SAR=0;SRF=121;SRP=265.758;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:40:21,19:21:817:19:751:-55.8695,0,-61.7941 0/1:86:71,15:71:2796:15:596:-28.0878,0,-225.869 0/0:26:26,0:26:1034:0:0:0,-7.82678,-93.3515 0/1:19:3,16:3:123:16:644:-52.5753,0,-5.74522 dDocent_Contig_9388 158 . C T 89.8672 . AB=0.5;ABP=3.0103;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X;DP=77;DPB=77;DPRA=1.09259;EPP=14.8328;EPPR=82.8438;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=223;QR=1651;RO=68;RPL=8;RPP=14.8328;RPPR=82.8438;RPR=1;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=150.67;SRR=68;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:18:18,0:18:432:0:0:0,-5.41854,-39.1172 0/0:28:27,1:27:620:1:26:0,-5.82901,-53.4255 0/0:19:17,2:17:435:2:41:0,-1.82484,-35.5077 0/1:12:6,6:6:164:6:156:-10.6857,0,-11.4196 dDocent_Contig_9389 28 . A T 1783.45 . AB=0.613636;ABP=12.8806;AC=4;AF=0.5;AN=8;AO=58;CIGAR=1X;DP=107;DPB=107;DPRA=2.04444;EPP=128.956;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2303;QR=1932;RO=49;RPL=0;RPP=128.956;RPPR=109.412;RPR=58;RUN=1;SAF=58;SAP=128.956;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:10,7:10:400:7:283:-20.7255,0,-31.24 0/1:71:24,47:24:940:47:1859:-146.142,0,-63.5258 0/0:15:15,0:15:592:0:0:0,-4.51545,-53.6186 1/1:4:0,4:0:0:4:161:-14.8755,-1.20412,0 dDocent_Contig_9390 15 . T G 107.026 . AB=0.5;ABP=3.0103;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=92;DPB=92;DPRA=0.285714;EPP=11.6962;EPPR=194.1;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=157;QR=3455;RO=88;RPL=0;RPP=11.6962;RPPR=194.1;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=88;SRP=194.1;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:8:4,4:4:163:4:157:-12.1006,0,-12.6502 0/0:47:47,0:47:1827:0:0:0,-14.1484,-164.646 0/0:23:23,0:23:907:0:0:0,-6.92369,-81.9289 0/0:14:14,0:14:558:0:0:0,-4.21442,-50.5595 dDocent_Contig_9391 33 . T A 908.054 . AB=0.477273;ABP=3.20771;AC=4;AF=0.5;AN=8;AO=30;CIGAR=1X;DP=68;DPB=68;DPRA=1.17778;EPP=68.1545;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.973684;PAO=0;PQA=0;PQR=0;PRO=0;QA=1182;QR=1519;RO=38;RPL=0;RPP=68.1545;RPPR=85.5263;RPR=30;RUN=1;SAF=30;SAP=68.1545;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:9:0,9:0:0:9:361:-32.853,-2.70927,0 0/0:15:15,0:15:606:0:0:0,-4.51545,-54.8784 0/1:24:13,11:13:507:11:416:-30.5606,0,-38.745 0/1:20:10,10:10:406:10:405:-30.7898,0,-30.88 dDocent_Contig_9392 13 . G T 122.54 . AB=0.16129;ABP=64.7922;AC=4;AF=0.5;AN=8;AO=10;CIGAR=1X;DP=62;DPB=62;DPRA=0;EPP=24.725;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.1346;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=400;QR=2032;RO=52;RPL=0;RPP=24.725;RPPR=115.927;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:8,1:8:323:1:41:-1.3853,0,-26.7299 0/1:17:12,5:12:482:5:195:-12.8049,0,-38.6128 0/1:19:17,2:17:643:2:82:-2.06011,0,-50.1148 0/1:17:15,2:15:584:2:82:-2.66217,0,-47.7804 dDocent_Contig_9393 46 . G T 73.6176 . AB=0.185185;ABP=26.2531;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=72;DPB=72;DPRA=1.8;EPP=13.8677;EPPR=148.499;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=0;PAIREDR=0.746269;PAO=0;PQA=0;PQR=0;PRO=0;QA=187;QR=2637;RO=67;RPL=0;RPP=13.8677;RPPR=148.499;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=67;SRP=148.499;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:6:6,0:6:240:0:0:0,-1.80618,-21.9749 0/0:21:21,0:21:817:0:0:0,-6.32163,-73.8312 0/1:27:22,5:22:873:5:187:-9.06071,0,-70.7537 0/0:18:18,0:18:707:0:0:0,-5.41854,-63.9597 dDocent_Contig_9394 12 . A T 64.0513 . AB=0.12069;ABP=75.4926;AC=1;AF=0.125;AN=8;AO=28;CIGAR=1X;DP=423;DPB=423;DPRA=0;EPP=63.8115;EPPR=830.341;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.107143;PAIREDR=0.173228;PAO=0;PQA=0;PQR=0;PRO=0;QA=1126;QR=14987;RO=381;RPL=0;RPP=63.8115;RPPR=830.341;RPR=28;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=381;SRP=830.341;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:114:103,6:103:4079:6:241:0,-11.15,-345.03 0/0:140:124,8:124:4870:8:324:0,-10.61,-408.713 0/0:111:104,7:104:4084:7:280:0,-7.84327,-342.006 0/1:58:50,7:50:1954:7:281:-8.1041,0,-158.514 dDocent_Contig_9395 7 . A C 185.296 . AB=0.466667;ABP=3.15506;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=41;DPB=41;DPRA=1.15385;EPP=18.2106;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=58;MQMR=58.9412;NS=3;NUMALT=1;ODDS=0;PAIRED=0.857143;PAIREDR=0.970588;PAO=0;PQA=0;PQR=0;PRO=0;QA=273;QR=1297;RO=34;RPL=0;RPP=18.2106;RPPR=76.8404;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:18:18,0:18:692:0:0:0,-5.41854,-61.1594 0/0:8:8,0:8:305:0:0:0,-2.40824,-27.8099 0/1:15:8,7:8:300:7:273:-20.3535,0,-22.8403 ./.:.:.:.:.:.:.:. dDocent_Contig_9398 35 . T C 66.7765 . AB=0.3;ABP=6.48466;AC=1;AF=0.125;AN=8;AO=3;CIGAR=5M1X;DP=40;DPB=39.6667;DPRA=1;EPP=9.52472;EPPR=79.0118;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=120;QR=1343;RO=35;RPL=0;RPP=9.52472;RPPR=79.0118;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:12:12,0,0:12:450:0,0:0,0:0,-3.61236,-40.8374,-3.61236,-40.8374,-40.8374 0|1:10:5,2,3:5:196:2,3:81,120:-8.37654,-3.20055,-18.7118,0,-9.42623,-15.206 0|0:10:10,0,0:10:395:0,0:0,0:0,-3.0103,-35.9095,-3.0103,-35.9095,-35.9095 0|0:8:8,0,0:8:302:0,0:0,0:0,-2.40824,-27.5355,-2.40824,-27.5355,-27.5355 dDocent_Contig_9399 33 . A G 170.688 . AB=0.25;ABP=20.3821;AC=2;AF=0.25;AN=8;AO=8;CIGAR=1X;DP=44;DPB=44;DPRA=2.66667;EPP=20.3821;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=325;QR=1441;RO=36;RPL=0;RPP=20.3821;RPPR=81.1833;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:8,6:8:321:6:246:-18.3057,0,-25.0431 0/1:18:16,2:16:633:2:79:-2.0787,0,-51.8831 0/0:7:7,0:7:285:0:0:0,-2.10721,-26.0244 0/0:5:5,0:5:202:0:0:0,-1.50515,-18.5615 dDocent_Contig_9400 13 . T C 2020.79 . AB=0.0967742;ABP=46.79;AC=0;AF=0;AN=8;AO=3;CIGAR=3X2M1X6M1X1M;DP=170;DPB=170;DPRA=0;EPP=9.52472;EPPR=68.1545;GTI=0;LEN=1;MEANALT=6;MQM=60;MQMR=60;NS=4;NUMALT=6;ODDS=5.55112e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=119;QR=1168;RO=30;RPL=0;RPP=9.52472;RPPR=68.1545;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:46:9,0,5,0,4,10,17:9:349:0,5,0,4,10,17:0,185,0,155,396,659:-55.347,-58.0562,-86.7298,-42.9249,-71.598,-70.0929,-58.0562,-86.7298,-71.598,-86.7298,-45.3222,-73.9958,-58.8642,-73.9958,-72.7917,-25.461,-54.1356,-39.004,-54.1356,-41.4013,-51.1253,-3.92278,-32.597,-17.4664,-32.597,-19.8628,0,-27.4795 0|0:78:10,0,5,0,13,34,13:10:386:0,5,0,13,34,13:0,190,0,509,1324,510:-116.038,-119.049,-150.747,-103.467,-135.165,-133.66,-119.049,-150.747,-135.165,-150.747,-77.1942,-108.892,-93.3109,-108.892,-104.979,-10.2436,-41.9414,-26.3604,-41.9414,-0.0864693,-31.7064,-77.1079,-108.806,-93.2246,-108.806,-66.9515,0,-104.893 0|0:31:7,0,6,3,3,5,6:7:277:0,6,3,3,5,6:0,227,119,116,194,238:-17.4889,-19.5961,-42.3975,-0.987756,-23.7898,-21.9836,-9.79773,-32.6,-13.9921,-31.6969,-10.0672,-32.8692,-14.2616,-23.0715,-31.9661,-3.65447,-26.457,-7.84941,-16.6592,-16.9286,-24.9519,0,-22.8037,-4.19544,-13.0055,-13.2749,-6.86226,-20.9975 0|0:15:4,2,0,0,0,2,7:4:156:2,0,0,0,2,7:79,0,0,0,78,265:-20.513,-15.4474,-27.6714,-21.7171,-28.2734,-34.5428,-21.7171,-28.2734,-34.5428,-34.5428,-21.7171,-28.2734,-34.5428,-34.5428,-34.5428,-15.3036,-21.8607,-28.1302,-28.1302,-28.1302,-27.5281,0,-6.55772,-12.8253,-12.8253,-12.8253,-6.41307,-10.7181 dDocent_Contig_9401 160 . A T 48.9004 . AB=0.153846;ABP=30.0702;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=146;DPB=146;DPRA=0.65;EPP=11.6962;EPPR=292.063;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=156;QR=5464;RO=141;RPL=4;RPP=11.6962;RPPR=292.063;RPR=0;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=309.188;SRR=141;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:95:94,0:94:3634:0:0:0,-28.2968,-326.991 0/0:4:4,0:4:160:0:0:0,-1.20412,-14.7838 0/1:26:22,4:22:852:4:156:-6.58893,0,-69.1661 0/0:21:21,0:21:818:0:0:0,-6.32163,-73.9338 dDocent_Contig_9402 57 . A G 1050.37 . AB=0.277778;ABP=72.4974;AC=3;AF=0.375;AN=8;AO=46;CIGAR=1X;DP=185;DPB=185;DPRA=0;EPP=102.898;EPPR=302.673;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1800;QR=5503;RO=138;RPL=46;RPP=102.898;RPPR=302.673;RPR=0;RUN=1;SAF=46;SAP=102.898;SAR=0;SRF=138;SRP=302.673;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:115:96,18:96:3820:18:728:-31.137,0,-309.104 0/1:35:13,22:13:518:22:844:-65.7234,0,-36.4315 0/1:12:7,5:7:283:5:187:-13.575,0,-22.2306 0/0:23:22,1:22:882:1:41:0,-2.82912,-75.5968 dDocent_Contig_9403 40 . A C 51.8039 . AB=0.153846;ABP=30.0702;AC=2;AF=0.25;AN=8;AO=4;CIGAR=1X;DP=41;DPB=41;DPRA=1.73333;EPP=11.6962;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=156;QR=1435;RO=37;RPL=0;RPP=11.6962;RPPR=83.3548;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:4:2,2:2:76:2:82:-6.57556,0,-6.00942 0/0:5:5,0:5:202:0:0:0,-1.50515,-18.5621 0/0:10:10,0:10:388:0:0:0,-3.0103,-35.273 0/1:22:20,2:20:769:2:74:-0.401357,0,-62.8973 dDocent_Contig_9404 13 . C T 82.5122 . AB=0.172414;ABP=30.0414;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=117;DPB=117;DPRA=0.988636;EPP=13.8677;EPPR=246.215;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=200;QR=4527;RO=112;RPL=0;RPP=13.8677;RPPR=246.215;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=112;SRP=246.215;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:24,5:24:970:5:200:-9.64916,0,-78.8684 0/0:25:25,0:25:1004:0:0:0,-7.52575,-90.6553 0/0:32:32,0:32:1298:0:0:0,-9.63296,-117.082 0/0:31:31,0:31:1255:0:0:0,-9.33193,-113.214 dDocent_Contig_9406 14 . T A 1407.6 . AB=0.428571;ABP=8.28388;AC=4;AF=0.5;AN=8;AO=51;CIGAR=1X;DP=119;DPB=119;DPRA=0;EPP=113.755;EPPR=150.67;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=0.985294;PAO=0;PQA=0;PQR=0;PRO=0;QA=2012;QR=2625;RO=68;RPL=0;RPP=113.755;RPPR=150.67;RPR=51;RUN=1;SAF=51;SAP=113.755;SAR=0;SRF=68;SRP=150.67;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:34:24,10:24:933:10:387:-24.9421,0,-74.0407 0/1:12:11,1:11:429:1:41:-0.482207,0,-35.3503 0/1:43:23,20:23:889:20:785:-58.0176,0,-67.3746 0/1:30:10,20:10:374:20:799:-63.1946,0,-24.9736 dDocent_Contig_9407 43 . T A 78.4647 . AB=0.145455;ABP=63.0614;AC=3;AF=0.375;AN=8;AO=9;CIGAR=1X;DP=83;DPB=83;DPRA=0;EPP=22.5536;EPPR=163.699;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=358;QR=2958;RO=74;RPL=0;RPP=22.5536;RPPR=163.699;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=74;SRP=163.699;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:28:27,1:27:1060:1:40:0,-4.43316,-91.6898 0/1:24:21,3:21:851:3:122:-4.14777,0,-69.6762 0/1:27:23,4:23:935:4:156:-6.28714,0,-76.3232 0/1:4:3,1:3:112:1:40:-2.79156,0,-9.24079 dDocent_Contig_9408 107 . N A 1369.83 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=46;CIGAR=1X;DP=46;DPB=46;DPRA=0;EPP=102.898;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1501;QR=0;RO=0;RPL=0;RPP=102.898;RPPR=0;RPR=46;RUN=1;SAF=0;SAP=102.898;SAR=46;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:23:0,23:0:0:23:722:-65.274,-6.92369,0 1/1:5:0,5:0:0:5:171:-15.7266,-1.50515,0 1/1:13:0,13:0:0:13:436:-39.5621,-3.91339,0 1/1:5:0,5:0:0:5:172:-15.8185,-1.50515,0 dDocent_Contig_9410 17 . T A 657.815 . AB=0.320988;ABP=25.5561;AC=2;AF=0.25;AN=8;AO=26;CIGAR=1X;DP=117;DPB=117;DPRA=2.25;EPP=59.4686;EPPR=200.614;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1032;QR=3659;RO=91;RPL=0;RPP=59.4686;RPPR=200.614;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=91;SRP=200.614;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:55:33,22:33:1317:22:878:-62.7729,0,-102.24 0/1:26:22,4:22:895:4:154:-6.40651,0,-73.0288 0/0:24:24,0:24:964:0:0:0,-7.22472,-87.0607 0/0:12:12,0:12:483:0:0:0,-3.61236,-43.8214 dDocent_Contig_9411 10 . G A 1090.67 . AB=0.347107;ABP=27.5784;AC=4;AF=0.5;AN=8;AO=42;CIGAR=1X;DP=121;DPB=121;DPRA=0;EPP=94.2121;EPPR=174.557;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1667;QR=3172;RO=79;RPL=0;RPP=94.2121;RPPR=174.557;RPR=42;RUN=1;SAF=42;SAP=94.2121;SAR=0;SRF=79;SRP=174.557;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:42:18,24:18:726:24:975:-75.4036,0,-53.0226 0/1:28:15,13:15:597:13:497:-36.6346,0,-45.6375 0/1:34:31,3:31:1244:3:116:-0.580489,0,-101.997 0/1:17:15,2:15:605:2:79:-2.37973,0,-49.6679 dDocent_Contig_9412 24 . A G 392.692 . AB=0.222222;ABP=63.329;AC=4;AF=0.5;AN=8;AO=20;CIGAR=1X;DP=90;DPB=90;DPRA=0;EPP=46.4397;EPPR=155.013;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.4;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=803;QR=2795;RO=70;RPL=0;RPP=46.4397;RPPR=155.013;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=70;SRP=155.013;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:16,3:16:643:3:122:-5.65292,0,-52.4853 0/1:51:44,7:44:1752:7:284:-10.5815,0,-142.539 0/1:18:9,9:9:359:9:363:-27.6155,0,-27.2532 0/1:2:1,1:1:41:1:34:-2.79685,0,-3.49251 dDocent_Contig_9414 21 . C G 113.021 . AB=0.147541;ABP=68.8308;AC=2;AF=0.25;AN=8;AO=9;CIGAR=1X;DP=103;DPB=103;DPRA=1.45238;EPP=22.5536;EPPR=207.129;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.734043;PAO=0;PQA=0;PQR=0;PRO=0;QA=359;QR=3740;RO=94;RPL=0;RPP=22.5536;RPPR=207.129;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=94;SRP=207.129;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:39:33,6:33:1315:6:244:-10.5987,0,-106.866 0/0:36:36,0:36:1443:0:0:0,-10.8371,-130.12 0/1:22:19,3:19:737:3:115:-4.10055,0,-60.0228 0/0:6:6,0:6:245:0:0:0,-1.80618,-22.4295 dDocent_Contig_9415 26 . C T 695.72 . AB=0.431034;ABP=5.40641;AC=2;AF=0.25;AN=8;AO=26;CIGAR=1X;DP=94;DPB=94;DPRA=15.3333;EPP=59.4686;EPPR=150.67;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.961538;PAIREDR=0.985294;PAO=0;PQA=0;PQR=0;PRO=0;QA=1038;QR=2723;RO=68;RPL=0;RPP=59.4686;RPPR=150.67;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=68;SRP=150.67;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:34:33,1:33:1314:1:41:0,-6.14045,-114.428 0/1:21:17,4:17:688:4:161:-8.55364,0,-55.9274 0/1:37:16,21:16:642:21:836:-64.4161,0,-46.9771 0/0:2:2,0:2:79:0:0:0,-0.60206,-7.49724 dDocent_Contig_9416 49 . T C 199.974 . AB=0.164384;ABP=74.4309;AC=1;AF=0.125;AN=8;AO=18;CIGAR=1X;DP=176;DPB=176;DPRA=7;EPP=42.0968;EPPR=346.103;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=710;QR=6035;RO=158;RPL=0;RPP=42.0968;RPPR=346.103;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=158;SRP=346.103;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:73:61,12:61:2354:12:478:-21.3946,0,-190.075 0/0:59:54,5:54:2078:5:191:0,-0.204307,-169.678 0/0:36:35,1:35:1310:1:41:0,-6.74251,-114.078 0/0:8:8,0:8:293:0:0:0,-2.40824,-26.7167 dDocent_Contig_9417 43 . G T 54.9057 . AB=0.166667;ABP=26.1727;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=53;DPB=53;DPRA=2.48276;EPP=11.6962;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=156;QR=1964;RO=49;RPL=0;RPP=11.6962;RPPR=109.412;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:15:15,0:15:607:0:0:0,-4.51545,-54.9665 0/1:24:20,4:20:802:4:156:-7.1894,0,-65.271 0/0:11:11,0:11:432:0:0:0,-3.31133,-39.2274 0/0:3:3,0:3:123:0:0:0,-0.90309,-11.4648 dDocent_Contig_9419 45 . T G 149.834 . AB=0.24;ABP=17.6895;AC=4;AF=0.5;AN=8;AO=7;CIGAR=1X;DP=37;DPB=37;DPRA=0.787879;EPP=18.2106;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.714286;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=275;QR=1177;RO=30;RPL=0;RPP=18.2106;RPPR=68.1545;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1:0,1:0:0:1:39:-3.89656,-0.30103,0 0/0:11:11,0:11:433:0:0:0,-3.31133,-39.3248 0/1:15:11,4:11:425:4:155:-9.80858,0,-34.0872 0/1:10:8,2:8:319:2:81:-4.67543,0,-26.0655 dDocent_Contig_9420 32 . C A 195.821 . AB=0.275862;ABP=15.6647;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=66;DPB=66;DPRA=2.35135;EPP=20.3821;EPPR=128.956;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=326;QR=2258;RO=58;RPL=0;RPP=20.3821;RPPR=128.956;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:21,8:21:806:8:326:-20.98,0,-64.1169 0/0:12:12,0:12:464:0:0:0,-3.61236,-42.1011 0/0:11:11,0:11:436:0:0:0,-3.31133,-39.5942 0/0:14:14,0:14:552:0:0:0,-4.21442,-50.0145 dDocent_Contig_9423 69 . T A 60.1621 . AB=0.272727;ABP=7.94546;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=30;DPB=30;DPRA=1.73684;EPP=9.52472;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=115;QR=988;RO=27;RPL=3;RPP=9.52472;RPPR=61.6401;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:8,3:8:280:3:115:-7.41356,0,-22.2174 0/0:13:13,0:13:477:0:0:0,-3.91339,-43.2654 0/0:5:5,0:5:192:0:0:0,-1.50515,-17.6498 0/0:1:1,0:1:39:0:0:0,-0.30103,-3.89656 dDocent_Contig_9424 17 . C G 42.3018 . AB=0.190476;ABP=20.4855;AC=2;AF=0.25;AN=8;AO=6;CIGAR=1X;DP=74;DPB=74;DPRA=0.73913;EPP=16.0391;EPPR=150.67;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.8971;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.588235;PAO=0;PQA=0;PQR=0;PRO=0;QA=227;QR=2752;RO=68;RPL=0;RPP=16.0391;RPPR=150.67;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=68;SRP=150.67;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:23:23,0:23:936:0:0:0,-6.92369,-84.5211 0/0:30:28,2:28:1138:2:81:0,-1.34517,-95.0127 0/1:13:10,3:10:407:3:105:-5.87931,0,-33.0772 0/1:8:7,1:7:271:1:41:-1.68633,0,-22.3433 dDocent_Contig_9425 51 . G A 173.489 . AB=0.23913;ABP=30.2009;AC=2;AF=0.25;AN=8;AO=12;CIGAR=1X;DP=81;DPB=81;DPRA=26.6667;EPP=29.068;EPPR=152.842;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=417;QR=2650;RO=69;RPL=12;RPP=29.068;RPPR=152.842;RPR=0;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=69;SRP=152.842;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:34:33,1:33:1283:1:40:0,-6.23934,-111.745 0/1:28:22,6:22:806:6:191:-9.0677,0,-64.4186 0/1:18:13,5:13:520:5:186:-11.6786,0,-41.7288 0/0:1:1,0:1:41:0:0:0,-0.30103,-4.09457 dDocent_Contig_9426 151 . G A 70.805 . AB=0.333333;ABP=5.18177;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=42;DPB=42;DPRA=0.818182;EPP=9.52472;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=120;QR=1558;RO=39;RPL=0;RPP=9.52472;RPPR=87.6977;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=87.6977;SRR=39;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:6,3:6:236:3:120:-8.47842,0,-18.901 0/0:11:11,0:11:445:0:0:0,-3.31133,-40.4063 0/0:16:16,0:16:636:0:0:0,-4.81648,-57.5751 0/0:6:6,0:6:241:0:0:0,-1.80618,-22.0663 dDocent_Contig_9427 41 . G A 1044.45 . AB=0.297872;ABP=53.0466;AC=3;AF=0.375;AN=8;AO=42;CIGAR=1X;DP=238;DPB=238;DPRA=0.484536;EPP=94.2121;EPPR=419.933;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1672;QR=7558;RO=192;RPL=0;RPP=94.2121;RPPR=419.933;RPR=42;RUN=1;SAF=42;SAP=94.2121;SAR=0;SRF=192;SRP=419.933;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:97:97,0:97:3773:0:0:0,-29.1999,-339.598 0/1:86:50,32:50:2006:32:1284:-90.7396,0,-155.641 0/1:13:8,5:8:327:5:196:-14.0988,0,-25.8867 0/1:42:37,5:37:1452:5:192:-5.00398,0,-118.288 dDocent_Contig_9428 195 . C T 33.7167 . AB=0.222222;ABP=9.04217;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X;DP=30;DPB=30;DPRA=1.28571;EPP=7.35324;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=1089;RO=28;RPL=2;RPP=7.35324;RPPR=63.8115;RPR=0;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=63.8115;SRR=28;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:10:10,0:10:384:0:0:0,-3.0103,-34.912 0/0:6:6,0:6:224:0:0:0,-1.80618,-20.5104 0/1:9:7,2:7:279:2:82:-5.07041,0,-22.7719 0/0:5:5,0:5:202:0:0:0,-1.50515,-18.5621 dDocent_Contig_9429 17 . T C 48.5705 . AB=0.1875;ABP=16.582;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=54;DPB=54;DPRA=1.26316;EPP=9.52472;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=2007;RO=51;RPL=0;RPP=9.52472;RPPR=113.755;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:18:18,0:18:708:0:0:0,-5.41854,-64.0446 0/1:16:13,3:13:525:3:122:-6.55601,0,-42.7797 0/0:10:10,0:10:391:0:0:0,-3.0103,-35.5403 0/0:10:10,0:10:383:0:0:0,-3.0103,-34.8157 dDocent_Contig_9430 8 . T G 2405.8 . AB=0.373016;ABP=38.3053;AC=4;AF=0.5;AN=8;AO=94;CIGAR=1X;DP=252;DPB=252;DPRA=0;EPP=207.129;EPPR=346.103;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=0.978723;PAIREDR=0.993671;PAO=0;PQA=0;PQR=0;PRO=0;QA=3584;QR=6073;RO=158;RPL=0;RPP=207.129;RPPR=346.103;RPR=94;RUN=1;SAF=94;SAP=207.129;SAR=0;SRF=158;SRP=346.103;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:62:39,23:39:1503:23:881:-60.9456,0,-116.879 0/1:69:44,25:44:1681:25:951:-65.1332,0,-130.78 0/1:86:50,36:50:1928:36:1362:-96.9761,0,-147.873 0/1:35:25,10:25:961:10:390:-24.9227,0,-76.2668 dDocent_Contig_9431 58 . C T 346.356 . AB=0.27027;ABP=19.9713;AC=3;AF=0.375;AN=8;AO=10;CIGAR=3M1X3M;DP=45;DPB=43.8571;DPRA=0;EPP=24.725;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=401;QR=1066;RO=27;RPL=10;RPP=24.725;RPPR=61.6401;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:7:0,4,3:0:0:4,3:149,123:-22.7341,-10.5617,-9.35758,-12.5659,0,-11.6628 0|0:8:7,1,0:7:272:1,0:36,0:-1.19004,0,-22.4378,-3.29724,-22.7389,-25.6727 0|1:19:13,3,3:13:514:3,3:109,122:-6.17138,-1.20556,-42.593,0,-33.4307,-41.4224 0|1:11:7,0,4:7:280:0,4:0,156:-11.1051,-13.2123,-36.284,0,-23.4649,-22.2608 dDocent_Contig_9433 16 . T C 1155.67 . AB=0.340909;ABP=32.0291;AC=4;AF=0.5;AN=8;AO=45;CIGAR=1X;DP=132;DPB=132;DPRA=0;EPP=100.727;EPPR=191.928;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1792;QR=3513;RO=87;RPL=0;RPP=100.727;RPPR=191.928;RPR=45;RUN=1;SAF=45;SAP=100.727;SAR=0;SRF=87;SRP=191.928;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:50:44,6:44:1774:6:246:-7.46862,0,-144.819 0/1:51:21,30:21:850:30:1180:-91.1165,0,-61.4582 0/1:18:11,7:11:449:7:285:-20.6057,0,-35.3473 0/1:13:11,2:11:440:2:81:-3.77234,0,-36.0395 dDocent_Contig_9435 132 . A G 393.565 . AB=0.293103;ABP=24.5753;AC=2;AF=0.25;AN=8;AO=17;CIGAR=1X;DP=85;DPB=85;DPRA=2.14815;EPP=39.9253;EPPR=150.67;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=661;QR=2668;RO=68;RPL=0;RPP=39.9253;RPPR=150.67;RPR=17;RUN=1;SAF=0;SAP=39.9253;SAR=17;SRF=0;SRP=150.67;SRR=68;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:39:25,14:25:983:14:541:-37.2861,0,-77.0334 0/0:26:26,0:26:1020:0:0:0,-7.82678,-92.0929 0/1:19:16,3:16:626:3:120:-5.46774,0,-50.9523 0/0:1:1,0:1:39:0:0:0,-0.30103,-3.89656 dDocent_Contig_9436 27 . G A 195.526 . AB=0.208333;ABP=38.4777;AC=2;AF=0.25;AN=8;AO=10;CIGAR=1X;DP=77;DPB=77;DPRA=1.65517;EPP=24.725;EPPR=148.499;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=407;QR=2648;RO=67;RPL=0;RPP=24.725;RPPR=148.499;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=67;SRP=148.499;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:19:19,0:19:752:0:0:0,-5.71957,-68.0016 0/1:22:15,7:15:589:7:285:-19.4017,0,-46.7231 0/1:26:23,3:23:906:3:122:-3.54571,0,-74.0164 0/0:10:10,0:10:401:0:0:0,-3.0103,-36.4495 dDocent_Contig_9437 52 . A T 572.007 . AB=0.436364;ABP=4.94488;AC=4;AF=0.5;AN=8;AO=24;CIGAR=1X;DP=55;DPB=55;DPRA=0;EPP=55.1256;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=886;QR=1221;RO=31;RPL=24;RPP=55.1256;RPPR=70.3259;RPR=0;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:9,3:9:365:3:113:-6.92661,0,-29.6025 0/1:9:5,4:5:205:4:148:-10.9717,0,-16.1257 0/1:23:11,12:11:410:12:450:-33.9198,0,-30.308 0/1:11:6,5:6:241:5:175:-12.7805,0,-18.755 dDocent_Contig_9438 10 . C G 104.46 . AB=0.136986;ABP=86.5674;AC=1;AF=0.125;AN=8;AO=10;CIGAR=1X;DP=220;DPB=220;DPRA=1.4898;EPP=24.725;EPPR=459.02;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.995238;PAO=0;PQA=0;PQR=0;PRO=0;QA=372;QR=8364;RO=210;RPL=0;RPP=24.725;RPPR=459.02;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=210;SRP=459.02;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:73:63,10:63:2529:10:372:-11.844,0,-205.761 0/0:82:82,0:82:3263:0:0:0,-24.6845,-293.737 0/0:47:47,0:47:1853:0:0:0,-14.1484,-166.973 0/0:18:18,0:18:719:0:0:0,-5.41854,-65.0366 dDocent_Contig_9439 10 . C T 113.256 . AB=0.263158;ABP=12.2676;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=38;DPB=38;DPRA=3;EPP=13.8677;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=204;QR=1313;RO=33;RPL=0;RPP=13.8677;RPPR=74.6689;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:10:10,0:10:399:0:0:0,-3.0103,-36.2697 0/1:19:14,5:14:550:5:204:-13.0245,0,-44.121 0/0:6:6,0:6:244:0:0:0,-1.80618,-22.3388 0/0:3:3,0:3:120:0:0:0,-0.90309,-11.1877 dDocent_Contig_9440 24 . C T 1171.09 . AB=0.316667;ABP=38.0434;AC=4;AF=0.5;AN=8;AO=48;CIGAR=1X;DP=182;DPB=182;DPRA=0;EPP=107.241;EPPR=293.988;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1886;QR=5238;RO=134;RPL=0;RPP=107.241;RPPR=293.988;RPR=48;RUN=1;SAF=48;SAP=107.241;SAR=0;SRF=134;SRP=293.988;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:83:60,23:60:2342:23:902:-56.5049,0,-185.982 0/0:56:52,4:52:2021:4:157:0,-2.34909,-167.59 0/1:37:22,15:22:875:15:591:-42.3895,0,-67.9219 1/1:6:0,6:0:0:6:236:-21.6121,-1.80618,0 dDocent_Contig_9441 9 . T A 1301.29 . AB=0.456311;ABP=4.71796;AC=4;AF=0.5;AN=8;AO=47;CIGAR=2X2M1X;DP=103;DPB=103;DPRA=0;EPP=105.07;EPPR=122.441;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.957447;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1858;QR=2147;RO=55;RPL=0;RPP=105.07;RPPR=122.441;RPR=47;RUN=1;SAF=47;SAP=105.07;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:25:15,10:15:571:10:395:-28.3826,0,-44.1984 0|1:25:14,11:14:552:11:433:-31.8,0,-42.4976 0|1:23:9,14:9:358:14:558:-43.6414,0,-25.6603 0|1:30:17,12:17:666:12:472:-33.7031,0,-51.1435 dDocent_Contig_9442 7 . A G 68.2177 . AB=0.141026;ABP=90.3146;AC=3;AF=0.375;AN=8;AO=11;CIGAR=1X;DP=83;DPB=83;DPRA=5.2;EPP=26.8965;EPPR=157.185;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=365;QR=2673;RO=71;RPL=0;RPP=26.8965;RPPR=157.185;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=71;SRP=157.185;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:32:26,5:26:991:5:156:-4.86889,0,-80.0502 0/1:42:38,4:38:1427:4:140:-0.29825,0,-116.063 0/0:5:5,0:5:194:0:0:0,-1.50515,-17.8328 0/1:4:2,2:2:61:2:69:-5.34816,0,-4.58964 dDocent_Contig_9443 36 . A T 314.555 . AB=0.173077;ABP=99.5573;AC=2;AF=0.25;AN=8;AO=20;CIGAR=1X;DP=166;DPB=166;DPRA=2.07246;EPP=46.4397;EPPR=320.045;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.65;PAIREDR=0.89726;PAO=0;PQA=0;PQR=0;PRO=0;QA=807;QR=5823;RO=146;RPL=0;RPP=46.4397;RPPR=320.045;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=146;SRP=320.045;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:56:44,12:44:1748:12:481:-26.7828,0,-140.681 0/1:48:42,6:42:1670:6:246:-8.07068,0,-136.082 0/0:39:37,2:37:1474:2:80:0,-4.14838,-125.32 0/0:23:23,0:23:931:0:0:0,-6.92369,-84.0933 dDocent_Contig_9444 29 . T C 54.6725 . AB=0.16;ABP=28.1125;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=67;DPB=67;DPRA=1.78571;EPP=11.6962;EPPR=139.813;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=159;QR=2409;RO=63;RPL=0;RPP=11.6962;RPPR=139.813;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=63;SRP=139.813;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:15:15,0:15:575:0:0:0,-4.51545,-52.0881 0/0:6:6,0:6:237:0:0:0,-1.80618,-21.7035 0/0:21:21,0:21:824:0:0:0,-6.32163,-74.4808 0/1:25:21,4:21:773:4:159:-7.1662,0,-62.3503 dDocent_Contig_9445 7 . A C 3316.39 . AB=0.5;ABP=3.0103;AC=4;AF=0.5;AN=8;AO=124;CIGAR=1X;DP=248;DPB=248;DPRA=0;EPP=272.273;EPPR=270.101;GTI=0;LEN=1;MEANALT=1.25;MQM=57.4355;MQMR=45.1057;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=0.959677;PAIREDR=0.447154;PAO=0;PQA=0;PQR=0;PRO=0;QA=4697;QR=4680;RO=123;RPL=0;RPP=272.273;RPPR=270.101;RPR=124;RUN=1;SAF=124;SAP=272.273;SAR=0;SRF=123;SRP=270.101;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:74:33,41:33:1256:41:1566:-116.47,0,-77.303 0/1:66:44,21:44:1680:21:779:-50.5805,0,-112.501 0/1:56:25,31:25:945:31:1175:-86.0587,0,-57.4045 0/1:52:21,31:21:799:31:1177:-85.9272,0,-45.931 dDocent_Contig_9446 125 . G A 104.947 . AB=0.294118;ABP=9.26925;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=38;DPB=38;DPRA=2.42857;EPP=13.8677;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=185;QR=1161;RO=33;RPL=0;RPP=13.8677;RPPR=74.6689;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=74.6689;SRR=33;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:12,5:12:440:5:185:-11.8925,0,-34.8267 0/0:12:12,0:12:429:0:0:0,-3.61236,-38.9471 0/0:3:3,0:3:87:0:0:0,-0.90309,-8.11668 0/0:6:6,0:6:205:0:0:0,-1.80618,-18.7817 dDocent_Contig_9448 103 . N G 144.553 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=5;CIGAR=5X;DP=5;DPB=5;DPRA=0;EPP=13.8677;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=151;QR=0;RO=0;RPL=0;RPP=13.8677;RPPR=0;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:1:0,1:0:0:1:25:-2.49986,-0.30103,0 1|1:4:0,4:0:0:4:126:-11.6525,-1.20412,0 .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. dDocent_Contig_9449 26 . T A 110.351 . AB=0.222222;ABP=21.1059;AC=2;AF=0.25;AN=8;AO=8;CIGAR=1X;DP=94;DPB=94;DPRA=1.15873;EPP=3.0103;EPPR=189.757;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.930233;PAO=0;PQA=0;PQR=0;PRO=0;QA=324;QR=3433;RO=86;RPL=0;RPP=20.3821;RPPR=189.757;RPR=8;RUN=1;SAF=4;SAP=3.0103;SAR=4;SRF=86;SRP=189.757;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:46:44,2:44:1750:2:82:0,-6.0677,-149.935 0/0:21:21,0:21:844:0:0:0,-6.32163,-76.274 0/1:14:10,4:10:393:4:162:-10.7523,0,-31.5108 0/1:13:11,2:11:446:2:80:-3.6784,0,-36.5811 dDocent_Contig_9450 46 . A C 46.4832 . AB=0.176471;ABP=18.4661;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=49;DPB=49;DPRA=1.59375;EPP=9.52472;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.978261;PAO=0;PQA=0;PQR=0;PRO=0;QA=123;QR=1765;RO=46;RPL=0;RPP=9.52472;RPPR=102.898;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:8:8,0:8:313:0:0:0,-2.40824,-28.5325 0/0:11:11,0:11:439:0:0:0,-3.31133,-39.8655 0/1:17:14,3:14:516:3:123:-6.34728,0,-41.6504 0/0:13:13,0:13:497:0:0:0,-3.91339,-45.0692 dDocent_Contig_9452 54 . T C 195.009 . AB=0.290323;ABP=14.8483;AC=2;AF=0.25;AN=8;AO=9;CIGAR=1X;DP=58;DPB=58;DPRA=1.14815;EPP=9.04217;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.555556;PAIREDR=0.795918;PAO=0;PQA=0;PQR=0;PRO=0;QA=349;QR=1879;RO=49;RPL=9;RPP=22.5536;RPPR=109.412;RPR=0;RUN=1;SAF=7;SAP=9.04217;SAR=2;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:13:13,0:13:494:0:0:0,-3.91339,-44.7951 0/0:14:14,0:14:552:0:0:0,-4.21442,-50.0214 0/1:23:15,8:15:567:8:308:-21.1501,0,-44.4403 0/1:8:7,1:7:266:1:41:-1.68633,0,-21.8872 dDocent_Contig_9455 121 . A G 162.974 . AB=0.310345;ABP=12.0706;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=41;DPB=41;DPRA=1.20833;EPP=22.5536;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=293;QR=1089;RO=32;RPL=0;RPP=22.5536;RPPR=72.4974;RPR=9;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=72.4974;SRR=32;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:11,8:11:379:8:258:-17.8158,0,-28.7226 0/1:10:9,1:9:313:1:35:-0.488329,0,-25.4968 0/0:12:12,0:12:397:0:0:0,-3.61236,-36.0489 ./.:.:.:.:.:.:.:. dDocent_Contig_9456 23 . C T 230.954 . AB=0.184615;ABP=59.1679;AC=1;AF=0.125;AN=8;AO=12;CIGAR=1X;DP=162;DPB=162;DPRA=2.01031;EPP=29.068;EPPR=328.731;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=489;QR=6009;RO=150;RPL=0;RPP=29.068;RPPR=328.731;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=150;SRP=328.731;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:65:65,0:65:2641:0:0:0,-19.5669,-237.798 0/1:65:53,12:53:2079:12:489:-24.7944,0,-167.714 0/0:13:13,0:13:532:0:0:0,-3.91339,-48.2261 0/0:19:19,0:19:757:0:0:0,-5.71957,-68.4456 dDocent_Contig_9457 13 . T C 5622.04 . AB=0.409375;ABP=25.8379;AC=3;AF=0.375;AN=8;AO=131;CIGAR=2X4M1I10M;DP=320;DPB=335.875;DPRA=0;EPP=287.473;EPPR=157.185;GTI=0;LEN=1;MEANALT=3.25;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5117;QR=2793;RO=71;RPL=0;RPP=287.473;RPPR=157.185;RPR=131;RUN=1;SAF=131;SAP=287.473;SAR=0;SRF=71;SRP=157.185;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:91:6,5,46,33:6:238:5,46,33:198,1783,1300:-232.026,-217.535,-235.623,-87.368,-90.6642,-93.1141,-126.883,-130.179,0,-136.543 1|0:147:30,0,66,45:30:1182:0,66,45:0,2591,1790:-254.172,-263.203,-360.447,-50.1335,-147.377,-127.509,-115.826,-213.071,0,-199.524 0|0:45:22,0,6,16:22:859:0,6,16:0,237,636:-45.7396,-52.3623,-122.974,-32.8605,-103.471,-101.665,0,-70.6111,-51.1077,-65.7946 0|1:37:13,0,13,11:13:514:0,13,11:0,506,442:-37.6643,-41.5777,-83.8782,0,-42.2969,-38.3835,-5.14871,-47.4521,-5.87073,-44.1408 dDocent_Contig_9458 139 . T A 328.023 . AB=0.165289;ABP=120.754;AC=4;AF=0.5;AN=8;AO=20;CIGAR=2X1M2X1M1X;DP=121;DPB=121;DPRA=0;EPP=46.4397;EPPR=165.871;GTI=0;LEN=1;MEANALT=3;MQM=28.6;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=0.813333;PAO=0;PQA=0;PQR=0;PRO=0;QA=691;QR=2562;RO=75;RPL=0;RPP=46.4397;RPPR=165.871;RPR=20;RUN=1;SAF=0;SAP=46.4397;SAR=20;SRF=0;SRP=165.871;SRR=75;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:20:13,4,0,3:13:453:4,0,3:129,0,105:-6.49568,0,-35.6686,-10.4091,-36.8727,-47.2703,-2.98136,-29.4466,-39.8418,-38.9387 0|1:50:38,4,5,3:38:1311:4,5,3:132,165,102:-0.655693,-1.4746,-106.816,0,-95.929,-105.03,-5.71118,-101.63,-100.146,-111.334 0|1:41:22,9,0,8:22:738:9,0,8:327,0,277:-19.8139,0,-57.1008,-26.4365,-59.8101,-86.2185,-9.26187,-42.6175,-69.0239,-66.6157 0|1:10:2,1,1,6:2:60:1,1,6:34,35,207:-11.8728,-9.7268,-14.229,-9.93946,-11.995,-14.4409,0,-2.03581,-2.25289,-2.97775 dDocent_Contig_9459 13 . C T 1190.03 . AB=0.186441;ABP=103.781;AC=1;AF=0.125;AN=8;AO=22;CIGAR=7M1X;DP=118;DPB=101.5;DPRA=0;EPP=50.7827;EPPR=107.408;GTI=0;LEN=1;MEANALT=2.25;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=0.954545;PAIREDR=0.711538;PAO=0;PQA=0;PQR=0;PRO=0;QA=891;QR=2021;RO=52;RPL=0;RPP=50.7827;RPPR=115.927;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=51;SRP=107.408;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:29:15,1,0,13:15:583:1,0,13:39,0,527:-38.9575,-40.2682,-87.8664,-43.473,-88.1674,-91.3731,0,-44.7009,-47.9069,-43.9935 0|0:23:13,7,0,3:13:503:7,0,3:254,0,122:-15.7044,0,-39.1937,-19.6177,-41.3009,-60.9475,-9.53631,-31.234,-50.8798,-49.9767 0|0:42:12,14,11,5:12:469:14,11,5:541,400,201:-40.8281,0,-34.3519,-11.8595,-5.98743,-47.1079,-27.8718,-21.9975,-33.8526,-64.931 0|0:24:12,11,0,1:12:466:11,0,1:421,0,41:-30.9111,0,-34.9596,-34.5235,-38.271,-72.8159,-31.1371,-34.8852,-69.4308,-69.1298 dDocent_Contig_9460 29 . T A 77.7967 . AB=0.181818;ABP=41.702;AC=2;AF=0.25;AN=8;AO=9;CIGAR=1X;DP=67;DPB=67;DPRA=3.38889;EPP=14.8328;EPPR=128.956;GTI=0;LEN=1;MEANALT=1;MQM=49.3333;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.777778;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=355;QR=2315;RO=58;RPL=0;RPP=22.5536;RPPR=128.956;RPR=9;RUN=1;SAF=8;SAP=14.8328;SAR=1;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:23,5:23:918:5:192:-4.62121,0,-74.4978 0/0:17:16,1:16:636:1:41:0,-1.02294,-53.4771 0/1:16:13,3:13:525:3:122:-6.55601,0,-42.7808 0/0:6:6,0:6:236:0:0:0,-1.80618,-21.6105 dDocent_Contig_9463 16 . T C 324.418 . AB=0.282609;ABP=21.8927;AC=1;AF=0.125;AN=8;AO=13;CIGAR=1X;DP=68;DPB=68;DPRA=6.27273;EPP=31.2394;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.981818;PAO=0;PQA=0;PQR=0;PRO=0;QA=526;QR=2223;RO=55;RPL=0;RPP=31.2394;RPPR=122.441;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:46:33,13:33:1339:13:526:-33.8394,0,-106.917 0/0:2:2,0:2:81:0:0:0,-0.60206,-7.68573 0/0:14:14,0:14:557:0:0:0,-4.21442,-50.4696 0/0:6:6,0:6:246:0:0:0,-1.80618,-22.5201 dDocent_Contig_9464 16 . T A 347.487 . AB=0.21519;ABP=58.6715;AC=2;AF=0.25;AN=8;AO=17;CIGAR=1X;DP=198;DPB=198;DPRA=0.663866;EPP=39.9253;EPPR=396.047;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.994475;PAO=0;PQA=0;PQR=0;PRO=0;QA=680;QR=6825;RO=181;RPL=0;RPP=39.9253;RPPR=396.047;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=181;SRP=396.047;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:72:72,0:72:2717:0:0:0,-21.6742,-244.685 0/0:47:47,0:47:1821:0:0:0,-14.1484,-164.105 0/1:27:18,9:18:656:9:354:-24.0903,0,-51.234 0/1:52:44,8:44:1631:8:326:-14.0563,0,-131.376 dDocent_Contig_9466 26 . G A 37.1317 . AB=0.176471;ABP=18.4661;AC=2;AF=0.25;AN=8;AO=3;CIGAR=1X;DP=23;DPB=23;DPRA=2.83333;EPP=9.52472;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=794;RO=20;RPL=0;RPP=9.52472;RPPR=46.4397;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:7,2:7:278:2:82:-5.07041,0,-22.6806 0/1:8:7,1:7:283:1:40:-1.58744,0,-23.4351 0/0:1:1,0:1:41:0:0:0,-0.30103,-4.09457 0/0:5:5,0:5:192:0:0:0,-1.50515,-17.6497 dDocent_Contig_9467 9 . T C 1432.59 . AB=0.307692;ABP=57.2971;AC=3;AF=0.375;AN=8;AO=52;CIGAR=1X1M1I2M;DP=169;DPB=193.5;DPRA=0;EPP=115.927;EPPR=155.013;GTI=0;LEN=1;MEANALT=2.25;MQM=40.3846;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.971429;PAO=0;PQA=0;PQR=0;PRO=0;QA=2037;QR=2750;RO=70;RPL=0;RPP=115.927;RPPR=155.013;RPR=52;RUN=1;SAF=52;SAP=115.927;SAR=0;SRF=70;SRP=155.013;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:51:33,6,11:33:1292:6,11:237,353:-15.5855,-7.47683,-111.972,0,-88.2339,-102.939 0|1:38:17,14,7:17:674:14,7:558,147:-37.3063,0,-51.4184,-33.2496,-46.4586,-86.637 1|0:55:14,17,24:14:547:17,24:652,738:-54.5808,-8.57372,-48.4654,-5.19045,0,-42.9479 0|1:25:6,15,4:6:237:15,4:590,108:-43.1847,0,-15.08,-37.582,-12.2219,-55.8887 dDocent_Contig_9468 26 . G T 1155.04 . AB=0.292994;ABP=61.4464;AC=4;AF=0.5;AN=8;AO=46;CIGAR=1X;DP=157;DPB=157;DPRA=0;EPP=102.898;EPPR=244.044;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.869565;PAIREDR=0.954955;PAO=0;PQA=0;PQR=0;PRO=0;QA=1875;QR=4332;RO=111;RPL=0;RPP=102.898;RPPR=244.044;RPR=46;RUN=1;SAF=46;SAP=102.898;SAR=0;SRF=111;SRP=244.044;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:20,9:20:784:9:368:-24.7555,0,-62.1507 0/1:48:38,10:38:1498:10:406:-22.4506,0,-120.627 0/1:44:29,15:29:1100:15:612:-42.1718,0,-86.0306 0/1:36:24,12:24:950:12:489:-33.5237,0,-74.9654 dDocent_Contig_9470 74 . C T 204.886 . AB=0.253521;ABP=40.4758;AC=2;AF=0.25;AN=8;AO=20;CIGAR=1X;DP=105;DPB=105;DPRA=2.84848;EPP=46.4397;EPPR=187.585;GTI=0;LEN=1;MEANALT=1;MQM=53.3;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=571;QR=2869;RO=85;RPL=20;RPP=46.4397;RPPR=187.585;RPR=0;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=85;SRP=187.585;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:11,0:11:381:0:0:0,-3.31133,-34.6234 0/0:23:21,2:21:688:2:41:0,-3.02973,-58.3324 0/1:41:34,7:34:1146:7:221:-6.56243,0,-91.101 0/1:30:19,11:19:654:11:309:-17.3241,0,-50.1523 dDocent_Contig_9471 9 . T C 265.5 . AB=0.692308;ABP=7.18621;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X;DP=77;DPB=77;DPRA=0.609375;EPP=22.5536;EPPR=150.67;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=350;QR=2580;RO=68;RPL=0;RPP=22.5536;RPPR=150.67;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=68;SRP=150.67;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:4,9:4:152:9:350:-27.948,0,-10.1358 0/0:24:24,0:24:915:0:0:0,-7.22472,-82.666 0/0:21:21,0:21:788:0:0:0,-6.32163,-71.2436 0/0:19:19,0:19:725:0:0:0,-5.71957,-65.5798 dDocent_Contig_9472 107 . N A 47.2723 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=43;QR=0;RO=0;RPL=0;RPP=11.6962;RPPR=0;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1:0,1:0:0:1:12:-1.19999,-0.30103,0 1/1:2:0,2:0:0:2:14:-1.33,-0.60206,0 1/1:1:0,1:0:0:1:17:-1.69998,-0.30103,0 ./.:.:.:.:.:.:.:. dDocent_Contig_9473 7 . A G 385.577 . AB=0.193548;ABP=129.446;AC=3;AF=0.375;AN=8;AO=30;CIGAR=1X;DP=236;DPB=236;DPRA=0.63786;EPP=68.1545;EPPR=448.162;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=994;QR=7773;RO=205;RPL=0;RPP=68.1545;RPPR=448.162;RPR=30;RUN=1;SAF=30;SAP=68.1545;SAR=0;SRF=205;SRP=448.162;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:81:81,0:81:3061:0:0:0,-24.3834,-275.644 0/1:89:68,21:68:2572:21:674:-34.1614,0,-204.886 0/1:36:32,4:32:1215:4:148:-2.8434,0,-98.808 0/1:30:24,5:24:925:5:172:-6.93552,0,-74.7161 dDocent_Contig_9475 12 . A G 202.322 . AB=0.263158;ABP=21.525;AC=3;AF=0.375;AN=8;AO=10;CIGAR=1X;DP=45;DPB=45;DPRA=1.80952;EPP=24.725;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=399;QR=1356;RO=35;RPL=0;RPP=24.725;RPPR=79.0118;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:8:5,3:5:195:3:119:-8.68626,0,-15.5147 0/1:22:17,5:17:661:5:198:-11.5723,0,-53.1991 0/0:7:7,0:7:270:0:0:0,-2.10721,-24.6652 0/1:8:6,2:6:230:2:82:-5.37144,0,-18.6574 dDocent_Contig_9476 11 . G C 85.9072 . AB=0.157895;ABP=41.6397;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=113;DPB=113;DPRA=1.52;EPP=16.0391;EPPR=235.358;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=234;QR=4284;RO=107;RPL=0;RPP=16.0391;RPPR=235.358;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=107;SRP=235.358;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:38:32,6:32:1277:6:234:-9.98866,0,-103.76 0/0:23:23,0:23:931:0:0:0,-6.92369,-84.0909 0/0:35:35,0:35:1393:0:0:0,-10.536,-125.627 0/0:17:17,0:17:683:0:0:0,-5.11751,-61.798 dDocent_Contig_9477 28 . A T 319.779 . AB=0.24;ABP=17.6895;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X3M9D1M2X;DP=56;DPB=45.0625;DPRA=0;EPP=18.2106;EPPR=74.6689;GTI=0;LEN=1;MEANALT=2;MQM=25.5714;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=272;QR=1309;RO=33;RPL=0;RPP=18.2106;RPPR=74.6689;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:8:5,0,3,0:5:201:0,3,0:0,121,0:-4.8276,-6.33275,-22.9866,0,-16.966,-16.0629,-6.33275,-22.9866,-16.966,-22.9866 0|0:17:4,2,3,8:4:153:2,3,8:80,117,313:-24.5557,-19.193,-31.1527,-19.9941,-25.9838,-31.6419,0,-6.01062,-6.83418,-10.1783 0|0:9:7,0,1,0:7:279:0,1,0:0,34,0:0,-2.10721,-25.1354,-0.203524,-23.17,-22.869,-2.10721,-25.1354,-23.17,-25.1354 0|0:22:17,4,0,0:17:676:4,0,0:160,0,0:-7.99169,0,-54.4432,-13.1092,-55.6474,-68.7658,-13.1092,-55.6474,-68.7658,-68.7658 dDocent_Contig_9478 51 . G A 71.1107 . AB=0.151515;ABP=37.8197;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=88;DPB=88;DPRA=1.8;EPP=13.8677;EPPR=183.243;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.746988;PAO=0;PQA=0;PQR=0;PRO=0;QA=204;QR=3310;RO=83;RPL=5;RPP=13.8677;RPPR=183.243;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=83;SRP=183.243;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:14:14,0:14:565:0:0:0,-4.21442,-51.1931 0/0:27:27,0:27:1083:0:0:0,-8.12781,-97.7535 0/0:14:14,0:14:544:0:0:0,-4.21442,-49.2972 0/1:33:28,5:28:1118:5:204:-8.81004,0,-90.9655 dDocent_Contig_9480 14 . G A 280.906 . AB=0.3;ABP=16.9077;AC=1;AF=0.125;AN=8;AO=12;CIGAR=1X;DP=113;DPB=113;DPRA=1.64384;EPP=29.068;EPPR=222.329;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=461;QR=4041;RO=101;RPL=0;RPP=29.068;RPPR=222.329;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=101;SRP=222.329;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:60:60,0:60:2412:0:0:0,-18.0618,-217.223 0/1:40:28,12:28:1111:12:461:-29.7895,0,-88.2317 0/0:10:10,0:10:404:0:0:0,-3.0103,-36.7201 0/0:3:3,0:3:114:0:0:0,-0.90309,-10.6307 dDocent_Contig_9481 24 . T C 835.954 . AB=0.25;ABP=83.3548;AC=4;AF=0.5;AN=8;AO=37;CIGAR=1X;DP=148;DPB=148;DPRA=0;EPP=83.3548;EPPR=244.044;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.972973;PAIREDR=0.954955;PAO=0;PQA=0;PQR=0;PRO=0;QA=1490;QR=4407;RO=111;RPL=0;RPP=83.3548;RPPR=244.044;RPR=37;RUN=1;SAF=37;SAP=83.3548;SAR=0;SRF=111;SRP=244.044;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:39:26,13:26:1037:13:528:-36.1269,0,-81.8811 0/1:35:26,9:26:1024:9:362:-22.407,0,-81.9159 0/1:44:36,8:36:1458:8:326:-16.4643,0,-118.218 0/1:30:23,7:23:888:7:274:-15.995,0,-71.1918 dDocent_Contig_9482 9 . T C 3546.75 . AB=0.583732;ABP=15.7378;AC=4;AF=0.5;AN=8;AO=122;CIGAR=1M1X2M;DP=209;DPB=207;DPRA=0;EPP=267.93;EPPR=183.243;GTI=0;LEN=1;MEANALT=1.25;MQM=55.6639;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0.638554;PAO=0;PQA=0;PQR=0;PRO=0;QA=4709;QR=3252;RO=83;RPL=0;RPP=267.93;RPPR=183.243;RPR=122;RUN=1;SAF=122;SAP=267.93;SAR=0;SRF=83;SRP=183.243;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:55:14,0,41:14:552:0,41:0,1599:-127.422,-131.636,-177.055,0,-45.8113,-33.469 0|1:53:18,4,31:18:712:4,31:150,1190:-91.9935,-85.3361,-142.734,0,-46.5464,-49.2872 0|1:84:37,0,47:37:1454:0,47:0,1803:-136.88,-148.018,-267.619,0,-119.989,-105.841 0|1:17:14,0,3:14:534:0,3:0,117:-5.77847,-9.99289,-53.7921,0,-44.1869,-43.2838 dDocent_Contig_9483 22 . C T 1939.46 . AB=0.568966;ABP=7.80251;AC=4;AF=0.5;AN=8;AO=66;CIGAR=1X;DP=116;DPB=116;DPRA=0;EPP=129.482;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=58.303;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.939394;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2645;QR=1965;RO=50;RPL=0;RPP=146.327;RPPR=111.584;RPR=66;RUN=1;SAF=64;SAP=129.482;SAR=2;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:47:16,31:16:636:31:1250:-95.5114,0,-43.4247 0/1:30:16,14:16:616:14:554:-41.1719,0,-46.7378 0/1:27:14,13:14:552:13:521:-39.1075,0,-41.893 0/1:12:4,8:4:161:8:320:-25.553,0,-11.2625 dDocent_Contig_9484 16 . T C 766.188 . AB=0.238095;ABP=90.593;AC=4;AF=0.5;AN=8;AO=35;CIGAR=1X;DP=147;DPB=147;DPRA=0;EPP=79.0118;EPPR=246.215;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.991071;PAO=0;PQA=0;PQR=0;PRO=0;QA=1409;QR=4526;RO=112;RPL=0;RPP=79.0118;RPPR=246.215;RPR=35;RUN=1;SAF=35;SAP=79.0118;SAR=0;SRF=112;SRP=246.215;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:50:41,9:41:1649:9:361:-17.8015,0,-133.585 0/1:50:35,15:35:1421:15:601:-39.3728,0,-113.083 0/1:28:22,6:22:884:6:246:-14.0913,0,-71.4396 0/1:19:14,5:14:572:5:201:-12.7511,0,-46.102 dDocent_Contig_9485 75 . A G 2107.4 . AB=0.646018;ABP=23.9371;AC=4;AF=0.5;AN=8;AO=73;CIGAR=1X;DP=113;DPB=113;DPRA=0;EPP=161.528;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2787;QR=1452;RO=40;RPL=73;RPP=161.528;RPPR=89.8692;RPR=0;RUN=1;SAF=73;SAP=161.528;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:48:15,33:15:574:33:1262:-99.4229,0,-37.5524 0/1:22:5,17:5:138:17:653:-52.4839,0,-6.06697 0/1:23:13,10:13:467:10:388:-28.3542,0,-35.4325 0/1:20:7,13:7:273:13:484:-37.877,0,-18.9174 dDocent_Contig_9486 107 . N G 101.495 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=102;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1:0,1:0:0:1:32:-3.19931,-0.30103,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:70:-6.6474,-0.60206,0 dDocent_Contig_9487 51 . T C 83.3284 . AB=0.195122;ABP=36.112;AC=1;AF=0.125;AN=8;AO=11;CIGAR=1X;DP=123;DPB=123;DPRA=1.30667;EPP=26.8965;EPPR=246.215;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.909091;PAIREDR=0.991071;PAO=0;PQA=0;PQR=0;PRO=0;QA=327;QR=3877;RO=112;RPL=11;RPP=26.8965;RPPR=246.215;RPR=0;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=112;SRP=246.215;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:41:33,8:33:1113:8:242:-9.73078,0,-88.1044 0/0:33:31,2:31:1099:2:72:0,-3.09735,-92.3724 0/0:25:25,0:25:870:0:0:0,-7.52575,-78.5992 0/0:24:23,1:23:795:1:13:0,-5.92473,-70.563 dDocent_Contig_9488 10 . A T 424.786 . AB=0.2;ABP=85.092;AC=2;AF=0.25;AN=8;AO=23;CIGAR=1X;DP=158;DPB=158;DPRA=4.05556;EPP=52.9542;EPPR=296.159;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.985185;PAO=0;PQA=0;PQR=0;PRO=0;QA=933;QR=5404;RO=135;RPL=0;RPP=52.9542;RPPR=296.159;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=135;SRP=296.159;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:64:54,10:54:2178:10:403:-17.363,0,-176.923 0/1:41:30,11:30:1188:11:450:-28.5135,0,-94.8557 0/0:41:39,2:39:1559:2:80:0,-4.75065,-132.955 0/0:12:12,0:12:479:0:0:0,-3.61236,-43.4586 dDocent_Contig_9489 56 . A G 337.383 . AB=0.611111;ABP=4.9405;AC=1;AF=0.125;AN=8;AO=11;CIGAR=1X;DP=181;DPB=181;DPRA=0.331288;EPP=26.8965;EPPR=372.161;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=450;QR=6652;RO=170;RPL=11;RPP=26.8965;RPPR=372.161;RPR=0;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=170;SRP=372.161;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:48:48,0:48:1851:0:0:0,-14.4494,-166.791 0/0:60:60,0:60:2362:0:0:0,-18.0618,-212.752 0/0:55:55,0:55:2172:0:0:0,-16.5566,-195.666 0/1:18:7,11:7:267:11:450:-35.4372,0,-18.9737 dDocent_Contig_9490 21 . C T 50.6578 . AB=0.2;ABP=14.7363;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=117;DPB=117;DPRA=0.441176;EPP=9.52472;EPPR=250.558;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.666667;PAIREDR=0.973684;PAO=0;PQA=0;PQR=0;PRO=0;QA=121;QR=4540;RO=114;RPL=0;RPP=9.52472;RPPR=250.558;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=114;SRP=250.558;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:41:41,0:41:1633:0:0:0,-12.3422,-147.197 0/0:28:28,0:28:1102:0:0:0,-8.42884,-99.4626 0/0:33:33,0:33:1322:0:0:0,-9.93399,-119.242 0/1:15:12,3:12:483:3:121:-6.76475,0,-39.3047 dDocent_Contig_9491 16 . G A 152.633 . AB=0.25;ABP=18.2106;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X2M1X;DP=114;DPB=114;DPRA=0.976744;EPP=18.2106;EPPR=235.358;GTI=0;LEN=1;MEANALT=1;MQM=46.8571;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=0;PAIREDR=0.971963;PAO=0;PQA=0;PQR=0;PRO=0;QA=282;QR=4165;RO=107;RPL=0;RPP=18.2106;RPPR=235.358;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=107;SRP=235.358;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:28:21,7:21:818:7:282:-16.6612,0,-65.5091 0|0:34:34,0:34:1327:0:0:0,-10.235,-119.709 0|0:29:29,0:29:1132:0:0:0,-8.72987,-102.166 0|0:23:23,0:23:888:0:0:0,-6.92369,-80.2295 dDocent_Contig_9492 124 . G A 163.03 . AB=0;ABP=0;AC=2;AF=0.25;AN=8;AO=6;CIGAR=1X;DP=49;DPB=49;DPRA=0.814815;EPP=16.0391;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.166667;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=194;QR=1448;RO=43;RPL=0;RPP=16.0391;RPPR=96.3836;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=96.3836;SRR=43;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:8:8,0:8:279:0:0:0,-2.40824,-25.449 0/0:19:19,0:19:659:0:0:0,-5.71957,-59.6345 0/0:17:16,1:16:510:1:20:0,-3.11755,-44.2041 1/1:5:0,5:0:0:5:174:-16.002,-1.50515,0 dDocent_Contig_9493 21 . T A 42.5501 . AB=0.166667;ABP=20.3821;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=72;DPB=72;DPRA=1;EPP=9.52472;EPPR=152.842;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.507246;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=2770;RO=69;RPL=0;RPP=9.52472;RPPR=152.842;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=69;SRP=152.842;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:18:18,0:18:713:0:0:0,-5.41854,-64.489 0/0:19:19,0:19:765:0:0:0,-5.71957,-69.1708 0/1:18:15,3:15:606:3:122:-5.95395,0,-49.4575 0/0:17:17,0:17:686:0:0:0,-5.11751,-62.0686 dDocent_Contig_9494 47 . G T 34.5135 . AB=0.121212;ABP=44.1367;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=69;DPB=69;DPRA=2.45;EPP=13.8677;EPPR=133.434;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.96875;PAO=0;PQA=0;PQR=0;PRO=0;QA=201;QR=2537;RO=64;RPL=0;RPP=13.8677;RPPR=125.156;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=63;SRP=133.434;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:33:29,4:29:1142:4:160:-4.84893,0,-93.1301 0/0:16:15,1:15:608:1:41:0,-0.721913,-50.9637 0/0:9:9,0:9:354:0:0:0,-2.70927,-32.2203 0/0:11:11,0:11:433:0:0:0,-3.31133,-39.324 dDocent_Contig_9496 209 . N G 74.0386 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=78;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:78:-7.40278,-0.60206,0 dDocent_Contig_9497 26 . A G 1530.82 . AB=0.423077;ABP=9.69175;AC=2;AF=0.25;AN=8;AO=56;CIGAR=1X;DP=166;DPB=166;DPRA=3.125;EPP=124.613;EPPR=241.872;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2208;QR=4272;RO=110;RPL=0;RPP=124.613;RPPR=241.872;RPR=56;RUN=1;SAF=56;SAP=124.613;SAR=0;SRF=110;SRP=241.872;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:65:50,15:50:1940:15:585:-33.4201,0,-155.243 0/1:65:25,40:25:976:40:1582:-123.06,0,-68.574 0/0:16:16,0:16:638:0:0:0,-4.81648,-57.7558 0/0:20:19,1:19:718:1:41:0,-1.92603,-60.8415 dDocent_Contig_9498 23 . G A 385.025 . AB=0.264706;ABP=35.7101;AC=3;AF=0.375;AN=8;AO=18;CIGAR=1X;DP=90;DPB=90;DPRA=1.0303;EPP=42.0968;EPPR=159.356;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.708333;PAO=0;PQA=0;PQR=0;PRO=0;QA=703;QR=2869;RO=72;RPL=0;RPP=42.0968;RPPR=159.356;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=72;SRP=159.356;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:22:22,0:22:881:0:0:0,-6.62266,-79.601 0/1:19:13,6:13:509:6:237:-15.9824,0,-40.4349 0/1:30:23,7:23:921:7:281:-16.6295,0,-74.1626 0/1:19:14,5:14:558:5:185:-11.2886,0,-44.8432 dDocent_Contig_9499 14 . C T 544.499 . AB=0.252525;ABP=55.674;AC=3;AF=0.375;AN=8;AO=25;CIGAR=1X;DP=111;DPB=111;DPRA=2.75;EPP=57.2971;EPPR=189.757;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=984;QR=3451;RO=86;RPL=0;RPP=57.2971;RPPR=189.757;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=86;SRP=189.757;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:44:32,12:32:1281:12:468:-29.2204,0,-102.315 0/1:15:7,8:7:284:8:317:-24.3806,0,-21.418 0/1:40:35,5:35:1396:5:199:-6.24678,0,-113.854 0/0:12:12,0:12:490:0:0:0,-3.61236,-44.4511 dDocent_Contig_9500 110 . G A 467.864 . AB=0.302632;ABP=28.7251;AC=3;AF=0.375;AN=8;AO=23;CIGAR=1X;DP=126;DPB=126;DPRA=0.506667;EPP=52.9542;EPPR=226.672;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=822;QR=3654;RO=103;RPL=0;RPP=52.9542;RPPR=226.672;RPR=23;RUN=1;SAF=0;SAP=52.9542;SAR=23;SRF=0;SRP=226.672;SRR=103;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:50:50,0:50:1776:0:0:0,-15.0515,-160.123 0/1:50:35,15:35:1252:15:535:-33.4332,0,-97.9336 0/1:22:15,7:15:521:7:251:-16.3152,0,-40.5956 0/1:4:3,1:3:105:1:36:-2.39415,0,-8.59197 dDocent_Contig_9501 36 . G A 1461.77 . AB=0.32948;ABP=46.7033;AC=4;AF=0.5;AN=8;AO=57;CIGAR=1X;DP=173;DPB=173;DPRA=0;EPP=126.784;EPPR=254.901;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2270;QR=4593;RO=116;RPL=0;RPP=126.784;RPPR=254.901;RPR=57;RUN=1;SAF=57;SAP=126.784;SAR=0;SRF=116;SRP=254.901;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:46:39,7:39:1533:7:279:-11.6327,0,-124.362 0/1:70:37,33:37:1458:33:1323:-98.2589,0,-110.395 0/1:31:23,8:23:927:8:315:-19.3816,0,-74.4003 0/1:26:17,9:17:675:9:353:-24.3017,0,-53.2514 dDocent_Contig_9502 13 . T G 6687.34 . AB=0.722973;ABP=130.834;AC=4;AF=0.5;AN=8;AO=214;CIGAR=1X;DP=296;DPB=296;DPRA=0;EPP=467.705;EPPR=181.071;GTI=0;LEN=1;MEANALT=1;MQM=59.215;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.943925;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=8542;QR=3283;RO=82;RPL=0;RPP=467.705;RPPR=181.071;RPR=214;RUN=1;SAF=214;SAP=467.705;SAR=0;SRF=82;SRP=181.071;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:114:48,66:48:1953:66:2615:-201.079,0,-141.638 0/1:90:14,76:14:551:76:3034:-246.033,0,-22.835 0/1:48:15,33:15:584:33:1320:-100.462,0,-38.4416 0/1:44:5,39:5:195:39:1573:-128.558,0,-4.67693 dDocent_Contig_9503 26 . G C 937.46 . AB=0.542373;ABP=3.93042;AC=3;AF=0.375;AN=8;AO=34;CIGAR=1X;DP=91;DPB=91;DPRA=0;EPP=76.8404;EPPR=126.784;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.193;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.982456;PAO=0;PQA=0;PQR=0;PRO=0;QA=1369;QR=2281;RO=57;RPL=0;RPP=76.8404;RPPR=126.784;RPR=34;RUN=1;SAF=34;SAP=76.8404;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:32:30,2:30:1187:2:82:0,-1.85328,-99.3285 0/1:40:15,25:15:610:25:1000:-78.2489,0,-43.1966 0/1:11:7,4:7:281:4:164:-11.8386,0,-19.8865 0/1:8:5,3:5:203:3:123:-9.05655,0,-16.2448 dDocent_Contig_9505 9 . G C 3143.16 . AB=0.529412;ABP=4.5431;AC=4;AF=0.5;AN=8;AO=108;CIGAR=1X3M1X;DP=204;DPB=204;DPRA=0;EPP=237.529;EPPR=211.472;GTI=0;LEN=1;MEANALT=1;MQM=57.9722;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=0.657407;PAIREDR=0.927083;PAO=0;PQA=0;PQR=0;PRO=0;QA=4253;QR=3701;RO=96;RPL=0;RPP=237.529;RPPR=211.472;RPR=108;RUN=1;SAF=108;SAP=237.529;SAR=0;SRF=96;SRP=211.472;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:51:26,25:26:1001:25:986:-73.6704,0,-75.0384 0|1:46:22,24:22:848:24:947:-71.3325,0,-62.7901 0|1:63:25,38:25:957:38:1488:-114.757,0,-67.468 0|1:44:23,21:23:895:21:832:-61.9543,0,-67.6202 dDocent_Contig_9506 17 . T C 4612.94 . AB=0.60241;ABP=25.693;AC=4;AF=0.5;AN=8;AO=150;CIGAR=1X;DP=249;DPB=249;DPRA=0;EPP=328.731;EPPR=217.986;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.6465;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.949495;PAO=0;PQA=0;PQR=0;PRO=0;QA=6030;QR=3968;RO=99;RPL=0;RPP=328.731;RPPR=217.986;RPR=150;RUN=1;SAF=150;SAP=328.731;SAR=0;SRF=99;SRP=217.986;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:101:40,61:40:1620:61:2453:-190.503,0,-115.534 0/1:32:17,15:17:694:15:589:-43.7093,0,-53.1546 0/1:64:23,41:23:920:41:1660:-130.356,0,-63.8395 0/1:52:19,33:19:734:33:1328:-104.123,0,-50.7227 dDocent_Contig_9507 8 . T C 985.005 . AB=0.336066;ABP=31.4886;AC=4;AF=0.5;AN=8;AO=41;CIGAR=1X;DP=122;DPB=122;DPRA=0;EPP=92.0407;EPPR=178.9;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.604938;PAO=0;PQA=0;PQR=0;PRO=0;QA=1569;QR=3096;RO=81;RPL=0;RPP=92.0407;RPPR=178.9;RPR=41;RUN=1;SAF=41;SAP=92.0407;SAR=0;SRF=81;SRP=178.9;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:40:25,15:25:964:15:576:-40.1395,0,-75.0332 0/1:40:29,11:29:1098:11:422:-26.2917,0,-87.0816 0/1:25:17,8:17:645:8:302:-20.0101,0,-50.8583 0/1:17:10,7:10:389:7:269:-19.4571,0,-30.2509 dDocent_Contig_9508 187 . C A 139.438 . AB=0.5;ABP=3.0103;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=33;DPB=33;DPRA=1.30435;EPP=13.8677;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=203;QR=1134;RO=28;RPL=5;RPP=13.8677;RPPR=63.8115;RPR=0;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=63.8115;SRR=28;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:9:9,0:9:361:0:0:0,-2.70927,-32.8535 0/1:10:5,5:5:205:5:203:-15.6428,0,-15.8247 0/0:6:6,0:6:244:0:0:0,-1.80618,-22.3388 0/0:8:8,0:8:324:0:0:0,-2.40824,-29.5292 dDocent_Contig_9509 9 . G A 39.7686 . AB=0.122449;ABP=63.6786;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=247;DPB=247;DPRA=0.573248;EPP=20.3821;EPPR=521.992;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=58.9456;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.995816;PAO=0;PQA=0;PQR=0;PRO=0;QA=301;QR=9168;RO=239;RPL=0;RPP=20.3821;RPPR=521.992;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=239;SRP=521.992;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:41:39,2:39:1487:2:78:0,-4.93876,-126.62 0/0:82:82,0:82:3152:0:0:0,-24.6845,-282.273 0/0:75:75,0:75:2881:0:0:0,-22.5772,-256.44 0/1:49:43,6:43:1648:6:223:-5.67578,0,-133.819 dDocent_Contig_9510 44 . C G 1080.13 . AB=0.307143;ABP=48.239;AC=3;AF=0.375;AN=8;AO=43;CIGAR=1X;DP=171;DPB=171;DPRA=1.50538;EPP=96.3836;EPPR=117.08;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1717;QR=5140;RO=128;RPL=0;RPP=96.3836;RPPR=117.08;RPR=43;RUN=1;SAF=43;SAP=96.3836;SAR=0;SRF=128;SRP=280.959;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:85:62,23:62:2503:23:909:-56.5265,0,-199.813 0/1:32:19,13:19:754:13:522:-37.6937,0,-58.5477 0/1:23:16,7:16:640:7:286:-19.1911,0,-51.0103 0/0:31:31,0:31:1243:0:0:0,-9.33193,-112.138 dDocent_Contig_9511 51 . C T 1214.76 . AB=0.547619;ABP=4.66476;AC=3;AF=0.375;AN=8;AO=46;CIGAR=1X;DP=105;DPB=105;DPRA=1.33333;EPP=102.898;EPPR=131.127;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1680;QR=2069;RO=59;RPL=46;RPP=102.898;RPPR=131.127;RPR=0;RUN=1;SAF=46;SAP=102.898;SAR=0;SRF=59;SRP=131.127;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:64:24,40:24:890:40:1476:-113.848,0,-61.1498 0/0:21:21,0:21:719:0:0:0,-6.32163,-65.0161 0/1:8:6,2:6:198:2:77:-4.90059,0,-15.7307 0/1:12:8,4:8:262:4:127:-8.12478,0,-20.2838 dDocent_Contig_9512 46 . G C 165.092 . AB=0.268293;ABP=22.1298;AC=3;AF=0.5;AN=6;AO=11;CIGAR=3X;DP=41;DPB=41;DPRA=0;EPP=26.8965;EPPR=65.983;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=371;QR=864;RO=29;RPL=0;RPP=26.8965;RPPR=65.983;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:10:7,2:7:219:2:64:-3.04924,0,-16.9905 .:.:.:.:.:.:.:. 0|1:21:16,5:16:473:5:172:-9.49679,0,-36.5362 0|1:10:6,4:6:172:4:135:-9.47328,0,-12.7544 dDocent_Contig_9513 11 . T C 143.994 . AB=0.111111;ABP=215.815;AC=3;AF=0.375;AN=8;AO=18;CIGAR=1X;DP=177;DPB=177;DPRA=3.6;EPP=42.0968;EPPR=348.274;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.993711;PAO=0;PQA=0;PQR=0;PRO=0;QA=730;QR=6298;RO=159;RPL=0;RPP=42.0968;RPPR=348.274;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=159;SRP=348.274;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:73:67,6:67:2640:6:243:-0.27278,0,-215.77 0/1:48:42,6:42:1669:6:245:-7.98003,0,-135.996 0/1:41:35,6:35:1394:6:242:-9.8153,0,-113.374 0/0:15:15,0:15:595:0:0:0,-4.51545,-53.891 dDocent_Contig_9514 9 . G A 16776.5 . 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T C 35.7322 . AB=0.121212;ABP=44.1367;AC=1;AF=0.125;AN=8;AO=4;CIGAR=2X;DP=140;DPB=140;DPRA=0.925234;EPP=11.6962;EPPR=293.988;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=163;QR=5156;RO=134;RPL=4;RPP=11.6962;RPPR=293.988;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=134;SRP=293.988;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:56:55,0:55:2135:0:0:0,-16.5566,-191.954 0|1:33:28,4:28:1036:4:163:-5.27207,0,-83.8011 0|0:25:25,0:25:966:0:0:0,-7.52575,-87.2483 0|0:26:26,0:26:1019:0:0:0,-7.82678,-92.013 dDocent_Contig_9516 8 . T A 2467.43 . AB=0.277778;ABP=41.6143;AC=1;AF=0.125;AN=8;AO=25;CIGAR=1M1X1M;DP=181;DPB=229;DPRA=0;EPP=57.2971;EPPR=131.127;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=966;QR=2248;RO=59;RPL=0;RPP=57.2971;RPPR=131.127;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=59;SRP=131.127;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:71:27,20,0,24:27:1035:20,0,24:742,0,925:-67.8478,-19.0766,-98.0038,-75.9756,-104.024,-160.93,0,-28.0672,-84.9681,-77.7434 0|1:63:10,29,24,0:10:380:29,24,0:1068,927,0:-125.956,-44.9774,-67.4106,-52.8159,0,-76.7623,-128.966,-76.1405,-83.987,-160.132 0|0:27:8,17,1,0:8:292:17,1,0:642,39,0:-47.1994,0,-18.7323,-46.4,-20.6413,-69.9551,-49.6076,-23.8498,-70.2561,-73.4631 0|0:20:14,6,0,0:14:541:6,0,0:223,0,0:-13.138,0,-43.0153,-17.3525,-44.8214,-61.8142,-17.3525,-44.8214,-61.8142,-61.8142 dDocent_Contig_9517 29 . A G 257.658 . AB=0.529412;ABP=3.13803;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X;DP=64;DPB=64;DPRA=1.08511;EPP=22.5536;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=358;QR=2186;RO=55;RPL=0;RPP=22.5536;RPPR=122.441;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:24:24,0:24:959:0:0:0,-7.22472,-86.6124 0/1:17:8,9:8:317:9:358:-27.4648,0,-23.7765 0/0:14:14,0:14:555:0:0:0,-4.21442,-50.2925 0/0:9:9,0:9:355:0:0:0,-2.70927,-32.3091 dDocent_Contig_9518 8 . T C 146.146 . AB=0.333333;ABP=7.35324;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=81;DPB=81;DPRA=0.928571;EPP=18.2106;EPPR=163.699;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=273;QR=2822;RO=74;RPL=0;RPP=18.2106;RPPR=163.699;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=74;SRP=163.699;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:12,6:12:456:6:234:-16.0126,0,-35.9695 0/0:12:12,0:12:460:0:0:0,-3.61236,-41.749 0/0:21:20,1:20:764:1:39:0,-2.42507,-65.1907 0/0:30:30,0:30:1142:0:0:0,-9.0309,-103.078 dDocent_Contig_9519 20 . A G 1597.26 . AB=0.683544;ABP=26.1269;AC=4;AF=0.5;AN=8;AO=54;CIGAR=1X;DP=79;DPB=79;DPRA=0;EPP=120.27;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2106;QR=1015;RO=25;RPL=0;RPP=120.27;RPPR=57.2971;RPR=54;RUN=1;SAF=54;SAP=120.27;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:10,3:10:407:3:123:-7.5514,0,-33.0772 0/1:27:6,21:6:243:21:802:-64.3572,0,-14.1202 0/1:27:5,22:5:204:22:868:-70.2951,0,-10.6162 0/1:12:4,8:4:161:8:313:-24.9202,0,-11.2631 dDocent_Contig_9521 14 . C T 129.895 . AB=0.177778;ABP=43.5927;AC=2;AF=0.25;AN=8;AO=8;CIGAR=1X;DP=66;DPB=66;DPRA=2.14286;EPP=20.3821;EPPR=128.956;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=324;QR=2344;RO=58;RPL=0;RPP=20.3821;RPPR=128.956;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:9:9,0:9:367:0:0:0,-2.70927,-33.3953 0/1:34:28,6:28:1138:6:243:-12.0126,0,-92.4634 0/1:11:9,2:9:359:2:81:-4.3744,0,-29.36 0/0:12:12,0:12:480:0:0:0,-3.61236,-43.5481 dDocent_Contig_9522 34 . G A 1157.3 . AB=0.666667;ABP=16.763;AC=3;AF=0.375;AN=8;AO=38;CIGAR=1X;DP=79;DPB=79;DPRA=0.863636;EPP=85.5263;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1525;QR=1668;RO=41;RPL=0;RPP=85.5263;RPPR=92.0407;RPR=38;RUN=1;SAF=38;SAP=85.5263;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:10,20:10:409:20:812:-64.3648,0,-28.1397 0/1:12:2,10:2:82:10:391:-31.9302,0,-4.16732 0/0:22:22,0:22:890:0:0:0,-6.62266,-80.4079 0/1:15:7,8:7:287:8:322:-24.8324,0,-21.6898 dDocent_Contig_9523 116 . G T 574.539 . AB=0.5;ABP=3.0103;AC=2;AF=0.25;AN=8;AO=25;CIGAR=1X;DP=92;DPB=92;DPRA=1.19048;EPP=57.2971;EPPR=148.499;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=837;QR=2255;RO=67;RPL=0;RPP=57.2971;RPPR=148.499;RPR=25;RUN=1;SAF=0;SAP=57.2971;SAR=25;SRF=0;SRP=148.499;SRR=67;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:8,3:8:270:3:76:-3.77971,0,-21.3182 0/1:39:17,22:17:584:22:761:-57.0703,0,-41.1441 0/0:25:25,0:25:811:0:0:0,-7.52575,-73.2899 0/0:17:17,0:17:590:0:0:0,-5.11751,-53.4272 dDocent_Contig_9525 15 . G A 33.7162 . AB=0.222222;ABP=9.04217;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X;DP=77;DPB=77;DPRA=0.397059;EPP=7.35324;EPPR=165.871;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=3034;RO=75;RPL=0;RPP=7.35324;RPPR=165.871;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=75;SRP=165.871;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:23:23,0:23:936:0:0:0,-6.92369,-84.5402 0/0:27:27,0:27:1091:0:0:0,-8.12781,-98.4733 0/1:9:7,2:7:286:2:82:-5.07041,0,-23.4055 0/0:18:18,0:18:721:0:0:0,-5.41854,-65.2169 dDocent_Contig_9526 167 . C T 45.1009 . AB=0.1875;ABP=16.582;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=62;DPB=62;DPRA=1.04348;EPP=9.52472;EPPR=131.127;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=115;QR=2258;RO=59;RPL=3;RPP=9.52472;RPPR=131.127;RPR=0;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=131.127;SRR=59;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:13,3:13:508:3:115:-5.908,0,-41.2507 0/0:31:31,0:31:1167:0:0:0,-9.33193,-105.311 0/0:7:7,0:7:267:0:0:0,-2.10721,-24.3918 0/0:8:8,0:8:316:0:0:0,-2.40824,-28.8058 dDocent_Contig_9527 13 . T C 34.376 . AB=0.105263;ABP=131.584;AC=3;AF=0.375;AN=8;AO=10;CIGAR=1X4M;DP=115;DPB=115;DPRA=1.58333;EPP=24.725;EPPR=226.672;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.7;PAIREDR=0.873786;PAO=0;PQA=0;PQR=0;PRO=0;QA=390;QR=4089;RO=103;RPL=0;RPP=24.725;RPPR=226.672;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=103;SRP=226.672;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:24:21,0,3:21:838:0,3:0,114:-3.40599,-9.72762,-78.7615,0,-69.4159,-68.5128 0|1:39:35,0,4:35:1388:0,4:0,164:-3.40973,-13.9458,-128.181,0,-114.643,-113.439 0|1:32:27,2,3:27:1068:2,3:78,112:-1.02892,-2.73846,-90.0497,0,-81.4872,-86.9953 0|0:20:20,0,0:20:795:0,0:0,0:0,-6.0206,-71.8694,-6.0206,-71.8694,-71.8694 dDocent_Contig_9528 45 . T C 170.998 . AB=0.24;ABP=32.3686;AC=3;AF=0.375;AN=8;AO=12;CIGAR=1X;DP=93;DPB=93;DPRA=0.387597;EPP=29.068;EPPR=178.9;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.916667;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=406;QR=2907;RO=81;RPL=0;RPP=29.068;RPPR=178.9;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=81;SRP=178.9;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:43:43,0:43:1519:0:0:0,-12.9443,-137.003 0/1:23:18,5:18:657:5:165:-8.25177,0,-52.5384 0/1:21:16,5:16:588:5:171:-9.40469,0,-46.9358 0/1:6:4,2:4:143:2:70:-4.84115,0,-11.4153 dDocent_Contig_9529 11 . C T 54.8594 . AB=0.16;ABP=28.1125;AC=2;AF=0.25;AN=8;AO=4;CIGAR=1X;DP=78;DPB=78;DPRA=0.471698;EPP=11.6962;EPPR=163.699;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=160;QR=2967;RO=74;RPL=0;RPP=11.6962;RPPR=163.699;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=74;SRP=163.699;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:22:22,0:22:895:0:0:0,-6.62266,-80.8555 0/0:31:31,0:31:1238:0:0:0,-9.33193,-111.692 0/1:12:11,1:11:430:1:41:-0.482207,0,-35.4358 0/1:13:10,3:10:404:3:119:-7.18162,0,-32.807 dDocent_Contig_9530 156 . A G 1689.57 . AB=0.454545;ABP=5.37918;AC=4;AF=0.5;AN=8;AO=60;CIGAR=1X;DP=132;DPB=132;DPRA=0;EPP=133.299;EPPR=159.356;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2386;QR=2731;RO=72;RPL=0;RPP=133.299;RPPR=159.356;RPR=60;RUN=1;SAF=0;SAP=133.299;SAR=60;SRF=0;SRP=159.356;SRR=72;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:54:32,22:32:1237:22:888:-63.9723,0,-95.3655 0/1:43:25,18:25:909:18:700:-50.3811,0,-69.1635 0/1:27:12,15:12:468:15:598:-46.0294,0,-34.3439 0/1:8:3,5:3:117:5:200:-15.9717,0,-8.50214 dDocent_Contig_9531 43 . A T 37.3585 . AB=0.116279;ABP=58.0041;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=207;DPB=207;DPRA=0.786585;EPP=13.8677;EPPR=441.648;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=200;QR=8074;RO=202;RPL=0;RPP=13.8677;RPPR=441.648;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=202;SRP=441.648;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:110:110,0:110:4401:0:0:0,-33.1133,-396.037 0/0:18:18,0:18:724:0:0:0,-5.41854,-65.4855 0/1:43:38,5:38:1524:5:200:-5.43474,0,-124.457 0/0:36:36,0:36:1425:0:0:0,-10.8371,-128.493 dDocent_Contig_9534 22 . G A 1228.77 . AB=0.538462;ABP=4.01252;AC=2;AF=0.25;AN=8;AO=43;CIGAR=1X;DP=98;DPB=98;DPRA=7.83333;EPP=96.3836;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1697;QR=2177;RO=55;RPL=0;RPP=96.3836;RPPR=122.441;RPR=43;RUN=1;SAF=43;SAP=96.3836;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:4:4,0:4:163:0:0:0,-1.20412,-15.0584 0/1:50:24,26:24:975:26:1028:-77.7597,0,-72.9948 0/1:28:12,16:12:454:16:629:-48.5146,0,-32.7654 0/0:16:15,1:15:585:1:40:0,-0.820801,-48.9904 dDocent_Contig_9536 40 . C T 497.549 . AB=0.229508;ABP=41.7764;AC=5;AF=0.625;AN=8;AO=20;CIGAR=1X;DP=67;DPB=67;DPRA=0;EPP=46.4397;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=800;QR=1885;RO=47;RPL=0;RPP=46.4397;RPPR=105.07;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:34:29,5:29:1163:5:204:-8.50901,0,-94.7118 1/1:6:0,6:0:0:6:244:-22.3388,-1.80618,0 0/1:14:8,6:8:325:6:230:-16.8459,0,-25.4046 0/1:13:10,3:10:397:3:122:-7.4591,0,-32.175 dDocent_Contig_9537 30 . A G 74.3088 . AB=0.2;ABP=18.6449;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=50;DPB=50;DPRA=2;EPP=11.6962;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=164;QR=1818;RO=46;RPL=0;RPP=11.6962;RPPR=102.898;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:17:17,0:17:662:0:0:0,-5.11751,-59.9053 0/1:20:16,4:16:645:4:164:-9.1293,0,-52.3637 0/0:1:1,0:1:41:0:0:0,-0.30103,-4.09457 0/0:12:12,0:12:470:0:0:0,-3.61236,-42.6422 dDocent_Contig_9538 18 . A G 801.205 . AB=0.359551;ABP=18.2594;AC=4;AF=0.5;AN=8;AO=32;CIGAR=1X;DP=89;DPB=89;DPRA=0;EPP=72.4974;EPPR=126.784;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.71875;PAIREDR=0.614035;PAO=0;PQA=0;PQR=0;PRO=0;QA=1254;QR=2281;RO=57;RPL=0;RPP=72.4974;RPPR=126.784;RPR=32;RUN=1;SAF=32;SAP=72.4974;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:18,11:18:715:11:436:-30.8596,0,-55.9395 0/1:23:20,3:20:809:3:123:-4.5411,0,-66.2017 0/1:14:8,6:8:324:6:241:-17.8519,0,-25.3144 0/1:23:11,12:11:433:12:454:-34.2655,0,-32.3977 dDocent_Contig_9539 35 . G C 418.179 . AB=0.207921;ABP=77.8508;AC=3;AF=0.375;AN=8;AO=21;CIGAR=1X;DP=170;DPB=170;DPRA=0.487923;EPP=48.6112;EPPR=326.56;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=850;QR=5975;RO=149;RPL=0;RPP=48.6112;RPPR=326.56;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=149;SRP=326.56;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:69:69,0:69:2780:0:0:0,-20.7711,-250.305 0/1:25:19,6:19:763:6:245:-14.9037,0,-61.4653 0/1:29:21,8:21:854:8:321:-20.5271,0,-68.4395 0/1:47:40,7:40:1578:7:284:-11.785,0,-128.099 dDocent_Contig_9540 1 . N G 71.2118 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=75;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:75:-7.1201,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_9542 15 . C A 40.3118 . AB=0.116279;ABP=58.0041;AC=2;AF=0.25;AN=8;AO=6;CIGAR=1X;DP=76;DPB=76;DPRA=1.07407;EPP=16.0391;EPPR=155.013;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.928571;PAO=0;PQA=0;PQR=0;PRO=0;QA=244;QR=2816;RO=70;RPL=0;RPP=16.0391;RPPR=155.013;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=70;SRP=155.013;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:11,1:11:444:1:41:-0.482207,0,-36.7034 0/1:31:27,4:27:1100:4:163:-5.7265,0,-89.9499 0/0:15:14,1:14:544:1:40:0,-0.519771,-45.2985 0/0:18:18,0:18:728:0:0:0,-5.41854,-65.8432 dDocent_Contig_9544 144 . G A 129.028 . 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AB=0.230769;ABP=11.1951;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=209;DPB=209;DPRA=0.19898;EPP=9.52472;EPPR=450.334;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=57.7573;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.533981;PAO=0;PQA=0;PQR=0;PRO=0;QA=117;QR=8133;RO=206;RPL=0;RPP=9.52472;RPPR=450.334;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=206;SRP=450.334;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:106:106,0:106:4188:0:0:0,-31.9092,-376.227 0/0:51:51,0:51:2012:0:0:0,-15.3525,-180.791 0/0:39:39,0:39:1531:0:0:0,-11.7402,-137.927 0/1:13:10,3:10:402:3:117:-6.99682,0,-32.4904 dDocent_Contig_9546 17 . G A 404.487 . 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T G 1237.4 . AB=0.288136;ABP=72.019;AC=4;AF=0.5;AN=8;AO=51;CIGAR=1X;DP=177;DPB=177;DPRA=0;EPP=113.755;EPPR=276.616;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2034;QR=5012;RO=126;RPL=0;RPP=113.755;RPPR=276.616;RPR=51;RUN=1;SAF=51;SAP=113.755;SAR=0;SRF=126;SRP=276.616;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:63:43,20:43:1699:20:809:-54.1619,0,-134.17 0/1:44:35,9:35:1373:9:365:-19.9695,0,-110.572 0/1:45:27,18:27:1088:18:713:-50.9489,0,-84.6599 0/1:25:21,4:21:852:4:147:-6.05758,0,-69.4658 dDocent_Contig_9548 8 . T G 329.096 . AB=0.183333;ABP=107.531;AC=4;AF=0.5;AN=8;AO=22;CIGAR=1X;DP=120;DPB=120;DPRA=0;EPP=50.7827;EPPR=213.643;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.909091;PAIREDR=0.927835;PAO=0;PQA=0;PQR=0;PRO=0;QA=834;QR=3703;RO=97;RPL=0;RPP=50.7827;RPPR=213.643;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=97;SRP=213.643;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:53:46,6:46:1753:6:232:-5.20619,0,-141.981 0/1:31:24,7:24:921:7:270:-15.3336,0,-73.8752 0/1:24:18,6:18:681:6:216:-12.5624,0,-54.3962 0/1:12:9,3:9:348:3:116:-7.20534,0,-28.0679 dDocent_Contig_9549 8 . T C 1211.73 . AB=0.415929;ABP=9.94748;AC=4;AF=0.5;AN=8;AO=47;CIGAR=1X;DP=113;DPB=113;DPRA=0;EPP=105.07;EPPR=146.327;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.984848;PAO=0;PQA=0;PQR=0;PRO=0;QA=1791;QR=2464;RO=66;RPL=0;RPP=105.07;RPPR=146.327;RPR=47;RUN=1;SAF=47;SAP=105.07;SAR=0;SRF=66;SRP=146.327;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:45:18,27:18:689:27:1030:-79.4609,0,-48.7968 0/1:32:23,9:23:857:9:339:-21.2301,0,-67.8149 0/1:23:17,6:17:623:6:228:-13.9605,0,-49.47 0/1:13:8,5:8:295:5:194:-13.9195,0,-22.9857 dDocent_Contig_9550 34 . C A 32.0719 . AB=0.2;ABP=14.7363;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=125;DPB=125;DPRA=0.349727;EPP=13.8677;EPPR=263.587;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=175;QR=4653;RO=120;RPL=0;RPP=13.8677;RPPR=263.587;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=120;SRP=263.587;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:61:61,0:61:2373:0:0:0,-18.3628,-213.764 0/0:31:30,1:30:1155:1:35:0,-5.8333,-100.744 0/0:18:17,1:17:650:1:39:0,-1.52198,-54.9335 0/1:15:12,3:12:475:3:101:-4.90586,0,-38.5866 dDocent_Contig_9551 6 . C G 586.281 . AB=0.174603;ABP=234.772;AC=3;AF=0.375;AN=8;AO=50;CIGAR=1X;DP=388;DPB=388;DPRA=0;EPP=111.584;EPPR=543.309;GTI=0;LEN=1;MEANALT=1;MQM=40.9;MQMR=59.6805;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.674556;PAO=0;PQA=0;PQR=0;PRO=0;QA=1804;QR=13096;RO=338;RPL=0;RPP=111.584;RPPR=736.968;RPR=50;RUN=1;SAF=0;SAP=111.584;SAR=50;SRF=314;SRP=543.309;SRR=24;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:136:130,6:130:5041:6:215:0,-25.2084,-437.929 0/1:95:83,12:83:3224:12:433:-9.60399,0,-261.699 0/1:99:76,23:76:2938:23:823:-42.5201,0,-233.03 0/1:58:49,9:49:1893:9:333:-11.9019,0,-153.141 dDocent_Contig_9552 52 . C A 237.227 . AB=0.47619;ABP=3.1137;AC=1;AF=0.125;AN=8;AO=10;CIGAR=1X;DP=80;DPB=80;DPRA=1.0678;EPP=24.725;EPPR=155.013;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=349;QR=2542;RO=70;RPL=10;RPP=24.725;RPPR=155.013;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=70;SRP=155.013;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:28:28,0:28:1013:0:0:0,-8.42884,-91.483 0/0:28:28,0:28:1017:0:0:0,-8.42884,-91.8397 0/1:21:11,10:11:401:10:349:-25.4215,0,-30.1131 0/0:3:3,0:3:111:0:0:0,-0.90309,-10.3539 dDocent_Contig_9554 17 . G T 44.2005 . AB=0.133333;ABP=38.0434;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=151;DPB=151;DPRA=0.696629;EPP=16.0391;EPPR=313.531;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.5;PAIREDR=0.202797;PAO=0;PQA=0;PQR=0;PRO=0;QA=243;QR=5758;RO=143;RPL=0;RPP=16.0391;RPPR=313.531;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=143;SRP=313.531;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:43:43,0:43:1732:0:0:0,-12.9443,-156.094 0/1:30:26,4:26:1048:4:164:-6.119,0,-85.5764 0/0:46:44,0:44:1766:0:0:0,-13.2453,-158.749 0/0:32:30,2:30:1212:2:79:0,-2.13572,-101.855 dDocent_Contig_9555 38 . G T 217.028 . AB=0.310345;ABP=12.0706;AC=1;AF=0.125;AN=8;AO=12;CIGAR=1X;DP=93;DPB=93;DPRA=2.72;EPP=29.068;EPPR=178.9;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=474;QR=3204;RO=81;RPL=0;RPP=29.068;RPPR=178.9;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=81;SRP=178.9;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:39:36,3:36:1433:3:121:0,-0.459973,-117.943 0/1:29:20,9:20:762:9:353:-23.4014,0,-60.1582 0/0:16:16,0:16:646:0:0:0,-4.81648,-58.4743 0/0:9:9,0:9:363:0:0:0,-2.70927,-33.0349 dDocent_Contig_9556 51 . C T 147.539 . AB=0.173077;ABP=51.2838;AC=2;AF=0.25;AN=8;AO=12;CIGAR=1X;DP=117;DPB=117;DPRA=1.52381;EPP=29.068;EPPR=231.015;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=489;QR=4138;RO=105;RPL=12;RPP=29.068;RPPR=231.015;RPR=0;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=105;SRP=231.015;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:44:41,3:41:1621:3:122:0,-1.87283,-134.75 0/1:39:32,7:32:1248:7:285:-14.284,0,-100.843 0/0:21:21,0:21:833:0:0:0,-6.32163,-75.2806 0/1:13:11,2:11:436:2:82:-3.86629,0,-35.6794 dDocent_Contig_9557 32 . A G 155.885 . AB=0.142857;ABP=103.829;AC=3;AF=0.375;AN=8;AO=13;CIGAR=1X;DP=106;DPB=106;DPRA=2.02222;EPP=31.2394;EPPR=202.786;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.967391;PAO=0;PQA=0;PQR=0;PRO=0;QA=511;QR=3623;RO=92;RPL=0;RPP=31.2394;RPPR=202.786;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=92;SRP=202.786;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:40:35,4:35:1377:4:158:-2.45201,0,-112.041 0/1:40:32,8:32:1259:8:313:-16.4929,0,-101.54 0/1:11:10,1:10:395:1:40:-0.684349,0,-32.5951 0/0:15:15,0:15:592:0:0:0,-4.51545,-53.6155 dDocent_Contig_9558 12 . G A 313.031 . AB=0.179245;ABP=97.7357;AC=3;AF=0.375;AN=8;AO=19;CIGAR=1X;DP=142;DPB=142;DPRA=0.981481;EPP=44.2683;EPPR=261.486;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.842105;PAIREDR=0.910569;PAO=0;PQA=0;PQR=0;PRO=0;QA=750;QR=4897;RO=123;RPL=0;RPP=44.2683;RPPR=270.101;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=122;SRP=261.486;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:8,7:8:310:7:266:-19.7834,0,-23.7437 0/1:75:67,8:67:2686:8:325:-7.04239,0,-219.285 0/0:36:36,0:36:1418:0:0:0,-10.8371,-127.88 0/1:16:12,4:12:483:4:159:-9.87527,0,-39.0047 dDocent_Contig_9559 41 . T G 149.335 . AB=0.216216;ABP=28.8919;AC=2;AF=0.25;AN=8;AO=8;CIGAR=1X;DP=60;DPB=60;DPRA=1.6087;EPP=20.3821;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=319;QR=2106;RO=52;RPL=0;RPP=20.3821;RPPR=115.927;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:16:16,0:16:648:0:0:0,-4.81648,-58.6533 0/1:10:8,2:8:325:2:78:-4.393,0,-26.6093 0/1:27:21,6:21:853:6:241:-13.938,0,-68.9526 0/0:7:7,0:7:280:0:0:0,-2.10721,-25.5713 dDocent_Contig_9560 14 . G A 779.027 . AB=0.381579;ABP=12.2676;AC=2;AF=0.25;AN=8;AO=38;CIGAR=1X;DP=277;DPB=277;DPRA=0;EPP=85.5263;EPPR=521.992;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.920502;PAO=0;PQA=0;PQR=0;PRO=0;QA=1496;QR=9386;RO=239;RPL=0;RPP=85.5263;RPPR=521.992;RPR=38;RUN=1;SAF=38;SAP=85.5263;SAR=0;SRF=239;SRP=521.992;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:102:96,6:96:3749:6:232:0,-9.45646,-316.2 0/0:99:96,3:96:3790:3:114:0,-19.1696,-330.498 0/1:52:37,15:37:1451:15:597:-38.4153,0,-115.192 0/1:24:10,14:10:396:14:553:-42.8853,0,-28.7739 dDocent_Contig_9562 42 . C G 150.74 . AB=0.268293;ABP=22.1298;AC=4;AF=0.5;AN=8;AO=11;CIGAR=1X;DP=41;DPB=41;DPRA=0;EPP=26.8965;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=371;QR=1153;RO=30;RPL=0;RPP=26.8965;RPPR=68.1545;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:6,5:6:229:5:162:-11.5868,0,-17.6636 0/1:18:15,3:15:576:3:103:-4.18857,0,-46.7634 0/1:9:7,2:7:274:2:77:-4.59956,0,-22.319 0/1:3:2,1:2:74:1:29:-1.99657,0,-6.12279 dDocent_Contig_9563 21 . G C 540.22 . AB=0.0793651;ABP=99.8304;AC=0;AF=0;AN=8;AO=5;CIGAR=2X;DP=242;DPB=242;DPRA=0;EPP=13.8677;EPPR=435.133;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.733668;PAO=0;PQA=0;PQR=0;PRO=0;QA=199;QR=7879;RO=199;RPL=0;RPP=13.8677;RPPR=435.133;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=199;SRP=435.133;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:84:76,0,8:76:2999:0,8:0,298:-1.87855,-24.7568,-271.517,0,-247.135,-244.726 0|0:63:50,5,8:50:1972:5,8:199,318:-11.1291,-9.79531,-170.512,0,-145.836,-159.813 0|0:57:40,0,17:40:1587:0,17:0,664:-42.9259,-54.9671,-185.601,0,-131.026,-125.908 0|0:38:33,0,5:33:1321:0,5:0,182:-5.28969,-15.2237,-124.077,0,-109.222,-107.716 dDocent_Contig_9564 86 . A G 535.393 . AB=0.421053;ABP=6.09608;AC=2;AF=0.25;AN=8;AO=25;CIGAR=1X;DP=127;DPB=127;DPRA=0.530612;EPP=57.2971;EPPR=224.5;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.990196;PAO=0;PQA=0;PQR=0;PRO=0;QA=851;QR=3247;RO=102;RPL=25;RPP=57.2971;RPPR=224.5;RPR=0;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=102;SRP=224.5;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:49:49,0:49:1529:0:0:0,-14.7505,-137.882 0/1:44:25,19:25:805:19:645:-45.124,0,-59.5058 0/0:21:20,1:20:653:1:35:0,-2.823,-55.5791 0/1:13:8,5:8:260:5:171:-11.8132,0,-19.8051 dDocent_Contig_9565 209 . N G 452.86 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=12;CIGAR=1X;DP=12;DPB=12;DPRA=0;EPP=29.068;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=1.69407e-21;PAIRED=0.833333;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=485;QR=0;RO=0;RPL=12;RPP=29.068;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=29.068;SAR=12;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:4:0,4:0:0:4:161:-14.8753,-1.20412,0 1/1:5:0,5:0:0:5:203:-18.6531,-1.50515,0 1/1:3:0,3:0:0:3:121:-11.2802,-0.90309,0 ./.:.:.:.:.:.:.:. dDocent_Contig_9566 19 . C G 128.244 . AB=0.285714;ABP=8.59409;AC=1;AF=0.125;AN=8;AO=4;CIGAR=2X1M1X1M;DP=46;DPB=46;DPRA=2.15385;EPP=11.6962;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=160;QR=1560;RO=39;RPL=0;RPP=11.6962;RPPR=87.6977;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:6:6,0,0:6:242:0,0:0,0:0,-1.80618,-22.1569,-1.80618,-22.1569,-22.1569 0|0:19:16,3,0:16:641:3,0:122,0:-5.65292,0,-52.3046,-10.4694,-53.2077,-63.2719 0|1:14:10,0,4:10:404:0,4:0,160:-10.5694,-13.5797,-46.8885,0,-33.7095,-32.5054 0|0:7:7,0,0:7:273:0,0:0,0:0,-2.10721,-24.93,-2.10721,-24.93,-24.93 dDocent_Contig_9567 44 . C G 50.6558 . AB=0.2;ABP=14.7363;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=62;DPB=62;DPRA=0.957447;EPP=9.52472;EPPR=131.127;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=121;QR=2370;RO=59;RPL=0;RPP=9.52472;RPPR=131.127;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=59;SRP=131.127;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:17:17,0:17:688:0:0:0,-5.11751,-62.2485 0/0:23:23,0:23:922:0:0:0,-6.92369,-83.2814 0/0:7:7,0:7:285:0:0:0,-2.10721,-26.0244 0/1:15:12,3:12:475:3:121:-6.76454,0,-38.581 dDocent_Contig_9568 36 . C T 182.879 . AB=0.193548;ABP=53.5846;AC=4;AF=0.5;AN=8;AO=12;CIGAR=1X;DP=62;DPB=62;DPRA=0;EPP=29.068;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.86;PAO=0;PQA=0;PQR=0;PRO=0;QA=475;QR=2028;RO=50;RPL=0;RPP=29.068;RPPR=111.584;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:9,3:9:368:3:123:-7.85243,0,-29.873 0/1:6:5,1:5:203:1:41:-2.28839,0,-16.8469 0/1:21:16,5:16:650:5:196:-11.6922,0,-52.5119 0/1:23:20,3:20:807:3:115:-3.79869,0,-66.0206 dDocent_Contig_9569 12 . T A 114670 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=3302;CIGAR=1X;DP=3380;DPB=3380;DPRA=0;EPP=7173.21;EPPR=122.441;GTI=0;LEN=1;MEANALT=2.25;MQM=59.8873;MQMR=59.2182;NS=4;NUMALT=1;ODDS=0;PAIRED=0.533919;PAIREDR=0.0181818;PAO=0;PQA=0;PQR=0;PRO=0;QA=129822;QR=2192;RO=55;RPL=0;RPP=7173.21;RPPR=122.441;RPR=3302;RUN=1;SAF=3302;SAP=7173.21;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1046:8,1032:8:308:1032:40539:-3610.31,-285.385,0 1/1:1087:15,1066:15:605:1066:42024:-3725.78,-273.021,0 1/1:820:10,801:10:401:801:31454:-2788.39,-208.088,0 1/1:427:22,403:22:878:403:15805:-1341.96,-49.0121,0 dDocent_Contig_9571 11 . A G 77.9325 . AB=0.185185;ABP=26.2531;AC=2;AF=0.25;AN=8;AO=5;CIGAR=1X;DP=63;DPB=63;DPRA=0.75;EPP=13.8677;EPPR=128.956;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=198;QR=2312;RO=58;RPL=0;RPP=13.8677;RPPR=128.956;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:22:22,0:22:888:0:0:0,-6.62266,-80.2274 0/1:17:13,4:13:508:4:158:-9.48185,0,-40.9458 0/0:14:14,0:14:564:0:0:0,-4.21442,-51.1027 0/1:10:9,1:9:352:1:40:-0.985379,0,-29.0276 dDocent_Contig_9572 45 . T C 69.4628 . AB=0.181818;ABP=22.3561;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=81;DPB=81;DPRA=1.11864;EPP=11.6962;EPPR=170.214;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=162;QR=2777;RO=77;RPL=0;RPP=11.6962;RPPR=170.214;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=77;SRP=170.214;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:18,4:18:660:4:162:-8.34409,0,-53.1068 0/0:39:39,0:39:1443:0:0:0,-11.7402,-130.149 0/0:17:17,0:17:578:0:0:0,-5.11751,-52.3291 0/0:3:3,0:3:96:0:0:0,-0.90309,-8.95088 dDocent_Contig_9573 21 . C T 72.259 . AB=0.127273;ABP=69.3784;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=218;DPB=218;DPRA=1.01227;EPP=18.2106;EPPR=461.191;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.985782;PAO=0;PQA=0;PQR=0;PRO=0;QA=279;QR=8392;RO=211;RPL=0;RPP=18.2106;RPPR=461.191;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=211;SRP=461.191;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:76:76,0:76:3033:0:0:0,-22.8783,-273.064 0/0:52:52,0:52:2066:0:0:0,-15.6536,-186.131 0/1:55:48,7:48:1903:7:279:-8.92487,0,-154.923 0/0:35:35,0:35:1390:0:0:0,-10.536,-125.362 dDocent_Contig_9574 141 . G A 36.742 . AB=0.142857;ABP=26.2761;AC=2;AF=0.25;AN=8;AO=3;CIGAR=1X;DP=53;DPB=53;DPRA=0.65625;EPP=9.52472;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=123;QR=1902;RO=50;RPL=0;RPP=9.52472;RPPR=111.584;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=111.584;SRR=50;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:11,0:11:414:0:0:0,-3.31133,-37.5908 0/1:13:12,1:12:470:1:41:-0.181177,0,-38.7336 0/0:21:21,0:21:775:0:0:0,-6.32163,-70.0479 0/1:8:6,2:6:243:2:82:-5.37144,0,-19.8394 dDocent_Contig_9575 8 . T C 2498.34 . AB=0.732759;ABP=57.5966;AC=4;AF=0.5;AN=8;AO=85;CIGAR=1X;DP=116;DPB=116;DPRA=0;EPP=187.585;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=59.8235;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=3232;QR=1199;RO=31;RPL=0;RPP=187.585;RPPR=70.3259;RPR=85;RUN=1;SAF=85;SAP=187.585;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:6,30:6:234:30:1149:-92.8621,0,-10.594 0/1:17:5,12:5:191:12:458:-36.4449,0,-12.4409 0/1:34:12,22:12:466:22:835:-65.2368,0,-32.057 0/1:29:8,21:8:308:21:790:-62.6882,0,-19.3524 dDocent_Contig_9576 48 . G A 6344.1 . AB=0.719697;ABP=113.69;AC=5;AF=0.625;AN=8;AO=204;CIGAR=1X;DP=279;DPB=279;DPRA=0;EPP=445.991;EPPR=163.699;GTI=0;LEN=1;MEANALT=1.25;MQM=59.3333;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.95098;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=8057;QR=2955;RO=74;RPL=0;RPP=445.991;RPPR=163.699;RPR=204;RUN=1;SAF=204;SAP=445.991;SAR=0;SRF=74;SRP=163.699;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:108:24,84:24:962:84:3317:-266.067,0,-54.3615 0/1:105:33,71:33:1312:71:2807:-221.321,0,-86.9478 0/1:51:16,35:16:641:35:1375:-105.867,0,-42.6702 1/1:15:1,14:1:40:14:558:-46.5542,-0.519771,0 dDocent_Contig_9577 139 . G A 335.547 . AB=0.384615;ABP=6.01695;AC=3;AF=0.375;AN=8;AO=12;CIGAR=1X;DP=57;DPB=57;DPRA=0.965517;EPP=29.068;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=467;QR=1747;RO=45;RPL=0;RPP=29.068;RPPR=100.727;RPR=12;RUN=1;SAF=0;SAP=29.068;SAR=12;SRF=0;SRP=100.727;SRR=45;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:16,10:16:623:10:386:-27.2667,0,-48.581 1/1:2:0,2:0:0:2:81:-7.68573,-0.60206,0 0/0:13:13,0:13:499:0:0:0,-3.91339,-45.2515 0/0:16:16,0:16:625:0:0:0,-4.81648,-56.5895 dDocent_Contig_9578 66 . T C 202.007 . AB=0.211538;ABP=40.5935;AC=2;AF=0.25;AN=8;AO=11;CIGAR=1X;DP=104;DPB=104;DPRA=1;EPP=26.8965;EPPR=204.957;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.967742;PAO=0;PQA=0;PQR=0;PRO=0;QA=428;QR=3659;RO=93;RPL=11;RPP=26.8965;RPPR=204.957;RPR=0;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=93;SRP=204.957;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:35:35,0:35:1403:0:0:0,-10.536,-126.524 0/1:30:25,5:25:994:5:186:-8.06432,0,-80.7218 0/0:17:17,0:17:674:0:0:0,-5.11751,-60.9868 0/1:22:16,6:16:588:6:242:-15.5343,0,-46.6151 dDocent_Contig_9580 12 . G A 30.291 . AB=0.285714;ABP=5.80219;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X;DP=37;DPB=37;DPRA=0.7;EPP=7.35324;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=72;QR=1381;RO=35;RPL=0;RPP=7.35324;RPPR=79.0118;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:15:15,0:15:586:0:0:0,-4.51545,-53.068 0/0:14:14,0:14:549:0:0:0,-4.21442,-49.747 0/1:7:5,2:5:205:2:72:-4.72711,0,-16.7278 0/0:1:1,0:1:41:0:0:0,-0.30103,-4.09457 dDocent_Contig_9581 72 . A T 70.022 . AB=0.222222;ABP=21.1059;AC=2;AF=0.25;AN=8;AO=6;CIGAR=1X;DP=49;DPB=49;DPRA=1.22727;EPP=16.0391;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=198;QR=1434;RO=43;RPL=6;RPP=16.0391;RPPR=96.3836;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:11,2:11:375:2:65:-2.26006,0,-30.1655 0/0:17:17,0:17:568:0:0:0,-5.11751,-51.4365 0/1:14:10,4:10:345:4:133:-8.08415,0,-27.1682 0/0:5:5,0:5:146:0:0:0,-1.50515,-13.4271 dDocent_Contig_9582 12 . C T 579.692 . AB=0.0512821;ABP=275.836;AC=4;AF=0.5;AN=8;AO=8;CIGAR=4M1X4M1X;DP=194;DPB=196.4;DPRA=0;EPP=20.3821;EPPR=311.359;GTI=0;LEN=1;MEANALT=3.33333;MQM=56.75;MQMR=60;NS=4;NUMALT=3;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=318;QR=5567;RO=142;RPL=0;RPP=20.3821;RPPR=311.359;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=142;SRP=311.359;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:38:28,0,10,0:28:1107:0,10,0:0,398,0:-24.7406,-33.1694,-124.268,0,-91.4957,-88.4854,-33.1694,-124.268,-91.4957,-124.268 0|1:55:42,7,5,1:42:1638:7,5,1:270,194,34:-9.53498,0,-132.537,-6.23624,-118.707,-139.374,-19.696,-132.158,-138.393,-154.029 0|1:46:33,8,2,3:33:1303:8,2,3:302,81,121:-14.2562,0,-104.803,-17.5071,-100.531,-124.136,-14.2099,-97.2362,-114.763,-120.539 0|1:55:39,9,2,4:39:1519:9,2,4:348,75,163:-16.8353,0,-122.124,-22.4343,-118.691,-146.669,-15.1228,-111.385,-133.823,-138.762 dDocent_Contig_9583 43 . G T 94.6032 . AB=0.1875;ABP=30.1537;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=147;DPB=147;DPRA=0.834783;EPP=16.0391;EPPR=309.188;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=227;QR=5577;RO=141;RPL=0;RPP=16.0391;RPPR=309.188;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=141;SRP=309.188;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:42:42,0:42:1638:0:0:0,-12.6433,-147.657 0/0:29:29,0:29:1158:0:0:0,-8.72987,-104.5 0/0:44:44,0:44:1751:0:0:0,-13.2453,-157.817 0/1:32:26,6:26:1030:6:227:-11.1593,0,-83.3632 dDocent_Contig_9584 25 . A C 159.849 . AB=0.181818;ABP=51.3749;AC=2;AF=0.25;AN=8;AO=10;CIGAR=1X;DP=112;DPB=112;DPRA=0.964912;EPP=24.725;EPPR=224.5;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=391;QR=4050;RO=102;RPL=0;RPP=24.725;RPPR=224.5;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=102;SRP=224.5;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:50:42,8:42:1655:8:312:-13.3908,0,-134.127 0/0:30:30,0:30:1210:0:0:0,-9.0309,-109.173 0/0:27:27,0:27:1063:0:0:0,-8.12781,-95.9634 0/1:5:3,2:3:122:2:79:-5.99209,0,-9.86734 dDocent_Contig_9585 59 . C T 38.5284 . AB=0.116279;ABP=58.0041;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=93;DPB=93;DPRA=2.58;EPP=13.8677;EPPR=194.1;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.965909;PAO=0;PQA=0;PQR=0;PRO=0;QA=198;QR=3458;RO=88;RPL=5;RPP=13.8677;RPPR=194.1;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=88;SRP=194.1;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:43:38,5:38:1507:5:198:-5.25072,0,-122.929 0/0:17:17,0:17:675:0:0:0,-5.11751,-61.0814 0/0:16:16,0:16:622:0:0:0,-4.81648,-56.3149 0/0:17:17,0:17:654:0:0:0,-5.11751,-59.1775 dDocent_Contig_9586 11 . G A 1327.35 . AB=0.0555556;ABP=157.426;AC=0;AF=0;AN=8;AO=8;CIGAR=1X1M1X2M1X;DP=176;DPB=176;DPRA=0;EPP=20.3821;EPPR=204.957;GTI=0;LEN=1;MEANALT=2.66667;MQM=16;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=304;QR=3569;RO=93;RPL=0;RPP=20.3821;RPPR=204.957;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=93;SRP=204.957;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:40:36,3,1,0:36:1387:3,1,0:115,39,0:0,-6.77425,-119.753,-7.58116,-117.45,-121.347,-10.8371,-120.656,-121.648,-124.854 0|0:35:8,1,5,21:8:309:1,5,21:33,183,834:-66.2971,-67.3189,-92.3948,-53.7546,-77.7452,-77.6271,0,-24.0261,-10.4511,-19.0848 0|0:55:18,4,18,15:18:700:4,18,15:156,696,585:-51.7754,-53.75,-110.072,0,-54.1077,-52.133,-9.08973,-63.1911,-9.44802,-62.1217 0|0:46:31,0,6,9:31:1173:0,6,9:0,233,357:-20.0604,-29.3923,-125.539,-10.2497,-106.393,-104.586,0,-96.1486,-77.0011,-93.4394 dDocent_Contig_9587 48 . T A 39.7355 . AB=0.285714;ABP=5.80219;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X;DP=122;DPB=122;DPRA=0.182609;EPP=7.35324;EPPR=263.587;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=4749;RO=120;RPL=0;RPP=7.35324;RPPR=263.587;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=120;SRP=263.587;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:49:49,0:49:1963:0:0:0,-14.7505,-176.867 0/0:57:57,0:57:2220:0:0:0,-17.1587,-199.977 0/0:9:9,0:9:366:0:0:0,-2.70927,-33.3052 0/1:7:5,2:5:200:2:82:-5.67247,0,-16.2727 dDocent_Contig_9588 17 . G A 91.6942 . AB=0.162791;ABP=45.4803;AC=2;AF=0.25;AN=8;AO=8;CIGAR=1X;DP=105;DPB=105;DPRA=0.638889;EPP=20.3821;EPPR=213.643;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.989691;PAO=0;PQA=0;PQR=0;PRO=0;QA=316;QR=3878;RO=97;RPL=0;RPP=20.3821;RPPR=213.643;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=97;SRP=213.643;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:25,4:25:1001:4:154:-5.50155,0,-81.6549 0/0:36:36,0:36:1419:0:0:0,-10.8371,-127.957 0/0:26:25,1:25:1012:1:41:0,-3.73221,-87.2783 0/1:14:11,3:11:446:3:121:-7.06578,0,-36.2812 dDocent_Contig_9589 28 . A T 124.975 . AB=0.242424;ABP=22.0271;AC=3;AF=0.375;AN=8;AO=8;CIGAR=1X1M1I4M1X;DP=42;DPB=43.1429;DPRA=1.22222;EPP=20.3821;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=38;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.882353;PAO=0;PQA=0;PQR=0;PRO=0;QA=302;QR=1328;RO=34;RPL=0;RPP=20.3821;RPPR=76.8404;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:15:13,2:13:508:2:76:-2.13266,0,-41.5491 0|0:9:9,0:9:346:0:0:0,-2.70927,-31.4964 0|1:10:9,1:9:354:1:36:-0.3773,0,-29.2092 0|1:8:3,5:3:120:5:190:-13.6872,0,-8.77966 dDocent_Contig_9590 11 . C T 139.715 . AB=0.555556;ABP=3.25157;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=100;DPB=100;DPRA=0.296703;EPP=13.8677;EPPR=209.3;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.4;PAIREDR=0.989474;PAO=0;PQA=0;PQR=0;PRO=0;QA=200;QR=3800;RO=95;RPL=0;RPP=13.8677;RPPR=209.3;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=95;SRP=209.3;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:27:27,0:27:1099:0:0:0,-8.12781,-99.1919 0/0:38:38,0:38:1519:0:0:0,-11.4391,-136.948 0/1:9:4,5:4:155:5:200:-15.6704,0,-11.6151 0/0:26:26,0:26:1027:0:0:0,-7.82678,-92.7212 dDocent_Contig_9591 31 . G A 587.826 . AB=0.245763;ABP=69.2586;AC=4;AF=0.5;AN=8;AO=29;CIGAR=1X;DP=118;DPB=118;DPRA=0;EPP=65.983;EPPR=196.271;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1114;QR=3509;RO=89;RPL=0;RPP=65.983;RPPR=196.271;RPR=29;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=89;SRP=196.271;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:32:28,4:28:1112:4:145:-3.77017,0,-90.7363 0/1:43:28,15:28:1093:15:570:-38.6866,0,-85.7116 0/1:16:10,6:10:396:6:241:-17.2498,0,-31.1823 0/1:27:23,4:23:908:4:158:-6.47216,0,-73.8959 dDocent_Contig_9592 137 . A G 744.532 . AB=0.411765;ABP=6.45911;AC=5;AF=0.625;AN=8;AO=30;CIGAR=1X;DP=60;DPB=60;DPRA=0;EPP=68.1545;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1043;QR=1035;RO=30;RPL=0;RPP=68.1545;RPPR=68.1545;RPR=30;RUN=1;SAF=0;SAP=68.1545;SAR=30;SRF=0;SRP=68.1545;SRR=30;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:17,10:17:599:10:359:-24.5256,0,-46.1106 0/1:10:7,3:7:223:3:99:-6.22675,0,-17.3712 0/1:14:6,8:6:213:8:294:-22.598,0,-15.3021 1/1:9:0,9:0:0:9:291:-26.5008,-2.70927,0 dDocent_Contig_9593 25 . G A 70.0334 . AB=0.25;ABP=11.6962;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=84;DPB=84;DPRA=1.27027;EPP=16.0391;EPPR=172.385;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.820513;PAO=0;PQA=0;PQR=0;PRO=0;QA=224;QR=3116;RO=78;RPL=0;RPP=16.0391;RPPR=172.385;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=78;SRP=172.385;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:12,4:12:484:4:143:-8.40126,0,-39.0946 0/0:31:29,2:29:1160:2:81:0,-1.6462,-96.9938 0/0:21:21,0:21:833:0:0:0,-6.32163,-75.2813 0/0:16:16,0:16:639:0:0:0,-4.81648,-57.8407 dDocent_Contig_9595 15 . C T 90.2045 . AB=0.151515;ABP=37.8197;AC=1;AF=0.125;AN=8;AO=5;CIGAR=2M1X4M;DP=120;DPB=120;DPRA=1.13793;EPP=13.8677;EPPR=233.186;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=0.90566;PAO=0;PQA=0;PQR=0;PRO=0;QA=202;QR=4186;RO=106;RPL=0;RPP=13.8677;RPPR=233.186;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=106;SRP=233.186;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:43:43,0,0,0:43:1702:0,0,0:0,0,0:0,-12.9443,-153.417,-12.9443,-153.417,-153.417,-12.9443,-153.417,-153.417,-153.417 0|0:29:28,0,1,0:28:1107:0,1,0:0,41,0:0,-8.42884,-99.5139,-4.6353,-96.1293,-95.8282,-8.42884,-99.5139,-96.1293,-99.5139 0|1:33:20,3,5,5:20:790:3,5,5:116,199,202:-10.6649,-12.5198,-76.6214,-0.271581,-61.139,-63.8261,0,-60.8699,-48.6717,-63.5572 0|0:15:15,0,0,0:15:587:0,0,0:0,0,0:0,-4.51545,-53.1681,-4.51545,-53.1681,-53.1681,-4.51545,-53.1681,-53.1681,-53.1681 dDocent_Contig_9596 48 . C T 1342.2 . AB=0.397059;ABP=9.26925;AC=5;AF=0.625;AN=8;AO=44;CIGAR=1X;DP=85;DPB=85;DPRA=0;EPP=90.0666;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.902439;PAO=0;PQA=0;PQR=0;PRO=0;QA=1763;QR=1640;RO=41;RPL=1;RPP=90.0666;RPPR=92.0407;RPR=43;RUN=1;SAF=44;SAP=98.5551;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:17,11:17:682:11:444:-31.8868,0,-53.2797 1/1:17:0,17:0:0:17:678:-61.3475,-5.11751,0 0/1:22:17,5:17:679:5:200:-11.7569,0,-54.8165 0/1:18:7,11:7:279:11:441:-34.6267,0,-20.062 dDocent_Contig_9598 107 . N A 44.6575 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=47;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:47:-4.46465,-0.60206,0 dDocent_Contig_9599 27 . T A 91.1922 . AB=0.114035;ABP=150.518;AC=3;AF=0.375;AN=8;AO=14;CIGAR=1X;DP=174;DPB=174;DPRA=0;EPP=33.4109;EPPR=350.446;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=570;QR=6422;RO=160;RPL=0;RPP=33.4109;RPPR=350.446;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=160;SRP=350.446;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:60:59,1:59:2364:1:41:0,-13.9672,-208.815 0/1:55:50,5:50:2003:5:204:-2.18738,0,-163.901 0/1:28:24,4:24:976:4:162:-6.53791,0,-79.7069 0/1:31:27,4:27:1079:4:163:-5.7265,0,-88.0665 dDocent_Contig_9600 44 . A C 188.385 . AB=0.153061;ABP=105.468;AC=2;AF=0.25;AN=8;AO=15;CIGAR=1X;DP=128;DPB=128;DPRA=3.26667;EPP=35.5824;EPPR=248.387;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=567;QR=4472;RO=113;RPL=0;RPP=35.5824;RPPR=248.387;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=113;SRP=248.387;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:71:63,8:63:2511:8:297:-5.70236,0,-204.758 0/0:24:24,0:24:948:0:0:0,-7.22472,-85.6179 0/1:27:20,7:20:784:7:270:-16.5341,0,-62.7483 0/0:6:6,0:6:229:0:0:0,-1.80618,-20.9734 dDocent_Contig_9601 24 . G A 1309.31 . AB=0.299435;ABP=64.8543;AC=4;AF=0.5;AN=8;AO=53;CIGAR=1X2M1X;DP=177;DPB=177;DPRA=0;EPP=118.098;EPPR=233.186;GTI=0;LEN=1;MEANALT=2;MQM=55.8491;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=0.886792;PAIREDR=0.990566;PAO=0;PQA=0;PQR=0;PRO=0;QA=2101;QR=4173;RO=106;RPL=0;RPP=118.098;RPPR=233.186;RPR=53;RUN=1;SAF=53;SAP=118.098;SAR=0;SRF=106;SRP=233.186;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:74:49,25,0,0:49:1934:25,0,0:992,0,0:-64.5604,0,-151.997,-79.3109,-159.523,-238.446,-79.3109,-159.523,-238.446,-238.446 0|1:48:19,15,10,4:19:741:15,10,4:600,358,161:-43.2938,0,-56.3976,-19.8709,-31.7671,-77.7585,-35.7413,-47.6411,-67.4987,-95.4428 0|1:25:19,3,3,0:19:747:3,3,0:119,117,0:-4.07978,0,-60.5427,-0.185563,-51.8291,-60.7225,-9.79935,-61.4458,-61.6256,-71.2423 0|1:30:19,10,1,0:19:751:10,1,0:390,40,0:-26.329,0,-58.7855,-28.7526,-58.5005,-90.2553,-32.0486,-61.7958,-90.5563,-93.8516 dDocent_Contig_9605 26 . T A 33.7125 . AB=0.125;ABP=51.8684;AC=2;AF=0.25;AN=8;AO=5;CIGAR=2X;DP=65;DPB=65;DPRA=1.6;EPP=13.8677;EPPR=133.299;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=200;QR=2398;RO=60;RPL=0;RPP=13.8677;RPPR=133.299;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:23:20,3:20:794:3:119:-4.1717,0,-64.8483 0|1:17:15,2:15:599:2:81:-2.56822,0,-49.1299 0|0:14:14,0:14:563:0:0:0,-4.21442,-51.013 0|0:11:11,0:11:442:0:0:0,-3.31133,-40.1356 dDocent_Contig_9607 18 . A T 305.457 . AB=0.0909091;ABP=50.9801;AC=1;AF=0.125;AN=8;AO=3;CIGAR=3M1X4M;DP=49;DPB=46.5;DPRA=8.25;EPP=9.52472;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=121;QR=1285;RO=34;RPL=0;RPP=9.52472;RPPR=76.8404;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:14:12,2,0,0:12:452:2,0,0:74,0,0:-2.81135,0,-36.8105,-6.42371,-37.4125,-43.4655,-6.42371,-37.4125,-43.4655,-43.4655 0|0:20:10,8,2,0:10:385:8,2,0:323,81,0:-23.6162,0,-29.1845,-19.947,-24.9102,-50.9439,-26.6265,-31.5927,-51.5459,-58.2263 0|1:13:12,0,1,0:12:448:0,1,0:0,40,0:-0.0822893,-3.69465,-40.3447,0,-37.0475,-36.7465,-3.69465,-40.3447,-37.0475,-40.3447 0|0:2:0,0,0,2:0:0:0,0,2:0,0,79:-7.49763,-7.49763,-7.49763,-7.49763,-7.49763,-7.49763,-0.60206,-0.60206,-0.60206,0 dDocent_Contig_9608 76 . A G 1120.77 . AB=0.0697674;ABP=72.1439;AC=0;AF=0;AN=8;AO=3;CIGAR=8M1X9M;DP=136;DPB=139.167;DPRA=0;EPP=9.52472;EPPR=141.985;GTI=0;LEN=1;MEANALT=6;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=75;QR=2041;RO=64;RPL=3;RPP=9.52472;RPPR=141.985;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=64;SRP=141.985;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:41:26,0,13,0:26:839:0,13,0:0,442,0:-28.2606,-36.0873,-103.763,0,-67.8984,-63.9851,-36.0873,-103.763,-67.8984,-103.763 0|0:43:17,6,13,3:17:553:6,13,3:193,423,75:-29.0561,-18.6088,-61.4576,0,-29.1076,-40.7569,-28.3343,-57.4231,-38.8304,-72.0792 0|0:39:14,1,21,0:14:427:1,21,0:34,706,0:-53.1238,-54.5789,-88.4838,0,-31.5503,-27.9905,-57.3382,-88.7849,-34.3121,-91.5437 0|0:13:7,0,4,0:7:222:0,4,0:0,136,0:-9.03463,-11.1418,-29.0275,0,-17.9788,-16.7747,-11.1418,-29.0275,-17.9788,-29.0275 dDocent_Contig_9609 187 . T G 49.4935 . AB=0.1875;ABP=16.582;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=77;DPB=77;DPRA=0.786885;EPP=9.52472;EPPR=163.699;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=123;QR=2957;RO=74;RPL=3;RPP=9.52472;RPPR=163.699;RPR=0;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=163.699;SRR=74;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:31:31,0:31:1246:0:0:0,-9.33193,-112.413 0/0:21:21,0:21:828:0:0:0,-6.32163,-74.8361 0/1:16:13,3:13:526:3:123:-6.64831,0,-42.8699 0/0:9:9,0:9:357:0:0:0,-2.70927,-32.4926 dDocent_Contig_9610 136 . A T 33.6608 . AB=0.131579;ABP=47.8112;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=49;DPB=49;DPRA=1.72727;EPP=13.8677;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=195;QR=1652;RO=44;RPL=0;RPP=13.8677;RPPR=98.5551;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=98.5551;SRR=44;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 0/1:12:10,2:10:375:2:78:-3.79111,0,-30.487 0/1:26:23,3:23:867:3:117:-3.0836,0,-70.5204 0/0:11:11,0:11:410:0:0:0,-3.31133,-37.2461 dDocent_Contig_9611 120 . C G 1546.21 . AB=0.615385;ABP=15.0369;AC=4;AF=0.5;AN=8;AO=64;CIGAR=1X;DP=104;DPB=104;DPRA=0;EPP=141.985;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=40;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2203;QR=1353;RO=40;RPL=0;RPP=141.985;RPPR=89.8692;RPR=64;RUN=1;SAF=0;SAP=141.985;SAR=64;SRF=0;SRP=89.8692;SRR=40;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:8:2,6:2:70:6:208:-16.0426,0,-4.23916 0/1:31:12,19:12:409:19:652:-47.8385,0,-27.8062 0/1:34:6,28:6:208:28:961:-73.8748,0,-8.82457 0/1:31:20,11:20:666:11:382:-24.2624,0,-50.9205 dDocent_Contig_9613 99 . N C 61.1776 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=3;CIGAR=2X4I3X4I4X;DP=4;DPB=7.55556;DPRA=3;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=21.3333;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=112;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. 1|1:1:0,0:0:0:0:0:0,0,0 1|1:3:0,3:0:0:3:112:-5.94004,-0.90309,0 .:.:.:.:.:.:.:. dDocent_Contig_9614 93 . T A 130.471 . AB=0.196078;ABP=43.9277;AC=3;AF=0.375;AN=8;AO=10;CIGAR=1X;DP=71;DPB=71;DPRA=0.85;EPP=24.725;EPPR=135.47;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=345;QR=2092;RO=61;RPL=10;RPP=24.725;RPPR=135.47;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=61;SRP=135.47;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:28,3:28:963:3:103:-0.278091,0,-77.6506 0/0:20:20,0:20:679:0:0:0,-6.0206,-61.4285 0/1:14:10,4:10:348:4:138:-8.54603,0,-27.4416 0/1:6:3,3:3:102:3:104:-7.89691,0,-7.71062 dDocent_Contig_9615 7 . A T 98.6332 . AB=0.145161;ABP=70.8163;AC=1;AF=0.125;AN=8;AO=18;CIGAR=1X;DP=391;DPB=391;DPRA=0.553288;EPP=42.0968;EPPR=810.798;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=59.2124;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.97043;PAO=0;PQA=0;PQR=0;PRO=0;QA=672;QR=14232;RO=372;RPL=0;RPP=42.0968;RPPR=810.798;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=372;SRP=810.798;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:143:135,7:135:5177:7:266:0,-18.6316,-438.936 0/0:147:147,0:147:5612:0:0:0,-44.2514,-500.567 0/1:62:53,9:53:2035:9:332:-11.5623,0,-162.684 0/0:39:37,2:37:1408:2:74:0,-4.71474,-119.976 dDocent_Contig_9616 23 . T A 886.098 . AB=0.102041;ABP=205.223;AC=1;AF=0.125;AN=8;AO=15;CIGAR=1X1M1X;DP=147;DPB=147;DPRA=0;EPP=35.5824;EPPR=217.986;GTI=0;LEN=1;MEANALT=2.25;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.6;PAIREDR=0.969697;PAO=0;PQA=0;PQR=0;PRO=0;QA=588;QR=3872;RO=99;RPL=0;RPP=35.5824;RPPR=217.986;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=99;SRP=217.986;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:47:32,3,11:32:1245:3,11:113,442:-26.8573,-27.2309,-128.652,0,-93.1288,-99.0765 0|1:24:16,7,1:16:617:7,1:277,41:-17.9671,0,-48.5341,-19.3978,-47.2558,-69.7539 0|0:55:41,3,11:41:1618:3,11:119,444:-24.2643,-26.812,-159.03,0,-123.33,-129.815 0|0:21:10,2,9:10:392:2,9:79,363:-26.919,-23.4298,-55.0564,0,-25.7306,-29.5228 dDocent_Contig_9620 95 . T G 217.072 . AB=0.240741;ABP=34.5369;AC=2;AF=0.25;AN=8;AO=13;CIGAR=1X;DP=97;DPB=97;DPRA=1.25581;EPP=31.2394;EPPR=185.414;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=452;QR=2911;RO=84;RPL=13;RPP=31.2394;RPPR=185.414;RPR=0;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=84;SRP=185.414;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:20:20,0:20:709:0:0:0,-6.0206,-64.1366 0/0:23:23,0:23:780:0:0:0,-6.92369,-70.5094 0/1:46:39,7:39:1352:7:242:-8.27033,0,-108.127 0/1:8:2,6:2:70:6:210:-16.8342,0,-4.23916 dDocent_Contig_9622 38 . A G 41.8062 . AB=0.285714;ABP=5.80219;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X;DP=45;DPB=45;DPRA=0.552632;EPP=7.35324;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=1720;RO=43;RPL=0;RPP=7.35324;RPPR=96.3836;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:7:5,2:5:198:2:81:-5.57852,0,-16.0898 0/0:7:7,0:7:284:0:0:0,-2.10721,-25.934 0/0:19:19,0:19:765:0:0:0,-5.71957,-69.171 0/0:12:12,0:12:473:0:0:0,-3.61236,-42.9179 dDocent_Contig_9623 9 . C T 1847.11 . AB=0.0724638;ABP=112.56;AC=0;AF=0;AN=8;AO=5;CIGAR=2X2M1X;DP=137;DPB=137;DPRA=0;EPP=13.8677;EPPR=100.727;GTI=0;LEN=1;MEANALT=2;MQM=44;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=188;QR=1763;RO=45;RPL=0;RPP=13.8677;RPPR=100.727;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:29:15,1,13:15:596:1,13:37,453:-28.7807,-30.3351,-79.1447,0,-46.1455,-45.1878 0|0:40:12,4,24:12:468:4,24:151,834:-58.5979,-50.1578,-87.4446,0,-26.444,-31.2598 0|0:40:9,0,29:9:346:0,29:0,910:-62.8415,-65.5507,-93.9757,0,-28.4517,-19.7218 0|0:28:9,0,19:9:353:0,19:0,613:-41.8894,-44.5986,-73.6605,0,-29.4218,-23.7023 dDocent_Contig_9624 46 . G C 46.7249 . AB=0.1875;ABP=16.582;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=79;DPB=79;DPRA=0.761905;EPP=9.52472;EPPR=168.042;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=120;QR=2898;RO=76;RPL=0;RPP=9.52472;RPPR=168.042;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=76;SRP=168.042;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:42:42,0:42:1606:0:0:0,-12.6433,-144.795 0/0:16:16,0:16:612:0:0:0,-4.81648,-55.4141 0/1:16:13,3:13:498:3:120:-6.37142,0,-40.3464 0/0:5:5,0:5:182:0:0:0,-1.50515,-16.7334 dDocent_Contig_9625 25 . G A 105.342 . AB=0.363636;ABP=10.1169;AC=3;AF=0.375;AN=8;AO=16;CIGAR=1X;DP=48;DPB=48;DPRA=3.66667;EPP=37.7539;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=19.0625;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=645;QR=1233;RO=32;RPL=0;RPP=37.7539;RPPR=72.4974;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:9,3:9:348:3:122:-0.770504,0,-28.0642 0/1:24:14,10:14:565:10:401:-11.0095,0,-43.9678 0/1:8:5,3:5:191:3:122:-2.90301,0,-15.1436 0/0:4:4,0:4:129:0:0:0,-1.20412,-11.9209 dDocent_Contig_9627 43 . G T 132.724 . AB=0.15;ABP=66.8516;AC=1;AF=0.125;AN=8;AO=13;CIGAR=1X;DP=368;DPB=368;DPRA=0.650224;EPP=31.2394;EPPR=773.883;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=0.615385;PAIREDR=0.949296;PAO=0;PQA=0;PQR=0;PRO=0;QA=519;QR=13944;RO=355;RPL=0;RPP=31.2394;RPPR=773.883;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=355;SRP=773.883;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:108:108,0:108:4263:0:0:0,-32.5112,-383.659 0/0:115:115,0:115:4492:0:0:0,-34.6184,-404.249 0/0:85:81,4:81:3150:4:156:0,-11.1734,-269.193 0/1:60:51,9:51:2039:9:363:-14.9714,0,-165.636 dDocent_Contig_9628 107 . N G 166.536 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=5;CIGAR=1X;DP=5;DPB=5;DPRA=0;EPP=13.8677;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=174;QR=0;RO=0;RPL=0;RPP=13.8677;RPPR=0;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:4:0,4:0:0:4:139:-12.8527,-1.20412,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:1:0,1:0:0:1:35:-3.49863,-0.30103,0 dDocent_Contig_9629 23 . G A 67.9252 . AB=0.0625;ABP=56.2114;AC=0;AF=0;AN=8;AO=2;CIGAR=1X1M1X;DP=112;DPB=112;DPRA=1.2;EPP=7.35324;EPPR=224.5;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=59.9216;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.77451;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=3891;RO=102;RPL=0;RPP=7.35324;RPPR=224.5;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=102;SRP=224.5;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:39:36,0,3:36:1362:0,3:0,118:0,-10.8371,-122.462,-0.737451,-112.754,-111.851 0|0:32:25,2,5:25:966:2,5:81,195:-8.49129,-9.33362,-88.0641,0,-72.6378,-77.8132 0|0:15:15,0,0:15:579:0,0:0,0:0,-4.51545,-52.4488,-4.51545,-52.4488,-52.4488 0|0:26:26,0,0:26:984:0,0:0,0:0,-7.82678,-88.8634,-7.82678,-88.8634,-88.8634 dDocent_Contig_9630 53 . G A 122.068 . AB=0.230769;ABP=27.5646;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=47;DPB=47;DPRA=2.4375;EPP=22.5536;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.6316;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=298;QR=1132;RO=38;RPL=9;RPP=22.5536;RPPR=85.5263;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:20,5:20:610:5:173:-8.38446,0,-47.664 0/1:14:10,4:10:304:4:125:-7.34517,0,-23.442 0/0:8:8,0:8:218:0:0:0,-2.40824,-19.889 ./.:.:.:.:.:.:.:. dDocent_Contig_9631 48 . T C 333.725 . AB=0.228916;ABP=55.989;AC=4;AF=0.5;AN=8;AO=19;CIGAR=1X2M1X;DP=83;DPB=83;DPRA=0;EPP=36.0395;EPPR=133.434;GTI=0;LEN=1;MEANALT=1;MQM=59.8421;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.684211;PAIREDR=0.890625;PAO=0;PQA=0;PQR=0;PRO=0;QA=714;QR=2446;RO=64;RPL=18;RPP=36.0395;RPPR=133.434;RPR=1;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=64;SRP=141.985;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:33:27,6:27:1022:6:216:-9.85246,0,-82.3483 0|1:24:18,6:18:704:6:224:-13.2877,0,-56.4678 0|1:21:15,6:15:563:6:234:-15.106,0,-44.6864 0|1:5:4,1:4:157:1:40:-2.49053,0,-13.0037 dDocent_Contig_9632 12 . G A 2120.16 . AB=0.521429;ABP=3.56868;AC=4;AF=0.5;AN=8;AO=73;CIGAR=1M3I2M1X;DP=140;DPB=194.75;DPRA=0;EPP=161.528;EPPR=148.499;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2891;QR=2616;RO=67;RPL=0;RPP=161.528;RPPR=148.499;RPR=73;RUN=1;SAF=73;SAP=161.528;SAR=0;SRF=67;SRP=148.499;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:62:26,36:26:1023:36:1429:-110.204,0,-73.7063 0|1:50:26,24:26:1017:24:949:-70.6621,0,-76.7839 0|1:22:10,12:10:386:12:472:-36.2069,0,-28.4713 0|1:6:5,1:5:190:1:41:-2.28839,0,-15.6603 dDocent_Contig_9633 43 . T A 1382.55 . AB=0.36;ABP=7.26639;AC=4;AF=0.5;AN=8;AO=41;CIGAR=1X;DP=68;DPB=68;DPRA=1.72727;EPP=92.0407;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1646;QR=1068;RO=27;RPL=0;RPP=92.0407;RPPR=61.6401;RPR=41;RUN=1;SAF=41;SAP=92.0407;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:32:0,32:0:0:32:1285:-115.918,-9.63296,0 0/1:18:11,7:11:435:7:279:-20.0617,0,-34.0852 0/1:7:5,2:5:193:2:82:-5.67247,0,-15.6323 0/0:11:11,0:11:440:0:0:0,-3.31133,-39.9545 dDocent_Contig_9634 62 . A G 1769.88 . AB=0.681818;ABP=28.2783;AC=3;AF=0.375;AN=8;AO=60;CIGAR=1X;DP=102;DPB=102;DPRA=2.09524;EPP=133.299;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2310;QR=1647;RO=42;RPL=60;RPP=133.299;RPPR=94.2121;RPR=0;RUN=1;SAF=60;SAP=133.299;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:52:18,34:18:702:34:1331:-104.39,0,-47.851 0/1:30:9,21:9:359:21:788:-62.1815,0,-23.6424 0/0:14:14,0:14:546:0:0:0,-4.21442,-49.4801 0/1:6:1,5:1:40:5:191:-15.7497,0,-2.1895 dDocent_Contig_9636 41 . C T 143.532 . AB=0.461538;ABP=3.17734;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X2M1X2M1X;DP=35;DPB=35;DPRA=1.77273;EPP=16.0391;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=218;QR=1149;RO=29;RPL=0;RPP=16.0391;RPPR=65.983;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:5:5,0:5:200:0:0:0,-1.50515,-18.3799 0|1:13:7,6:7:278:6:218:-16.0521,0,-21.4762 0|0:12:12,0:12:475:0:0:0,-3.61236,-43.101 0|0:5:5,0:5:196:0:0:0,-1.50515,-18.015 dDocent_Contig_9637 12 . A C 253.823 . AB=0.20339;ABP=48.096;AC=1;AF=0.125;AN=8;AO=12;CIGAR=1X;DP=136;DPB=136;DPRA=2.2987;EPP=29.068;EPPR=272.273;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=491;QR=4962;RO=124;RPL=0;RPP=29.068;RPPR=272.273;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=124;SRP=272.273;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:59:47,12:47:1901:12:491:-26.7802,0,-153.525 0/0:35:35,0:35:1393:0:0:0,-10.536,-125.627 0/0:35:35,0:35:1383:0:0:0,-10.536,-124.729 0/0:7:7,0:7:285:0:0:0,-2.10721,-26.0244 dDocent_Contig_9638 108 . G T 1509 . AB=0.471014;ABP=4.01736;AC=4;AF=0.5;AN=8;AO=65;CIGAR=1X;DP=138;DPB=138;DPRA=0;EPP=144.156;EPPR=161.528;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2206;QR=2409;RO=73;RPL=0;RPP=144.156;RPPR=161.528;RPR=65;RUN=1;SAF=0;SAP=144.156;SAR=65;SRF=0;SRP=161.528;SRR=73;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:66:32,34:32:1067:34:1149:-83.8453,0,-76.4629 0/1:55:32,23:32:1034:23:779:-53.8654,0,-76.7961 0/1:6:3,3:3:103:3:104:-7.89691,0,-7.80384 0/1:11:6,5:6:205:5:174:-12.6906,0,-15.4739 dDocent_Contig_9643 11 . A T 254.166 . AB=0.3125;ABP=12.7819;AC=1;AF=0.125;AN=8;AO=18;CIGAR=1X;DP=173;DPB=173;DPRA=7.90476;EPP=42.0968;EPPR=339.589;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=720;QR=6230;RO=155;RPL=0;RPP=42.0968;RPPR=339.589;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=155;SRP=339.589;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:32:22,10:22:888:10:401:-26.8146,0,-70.5944 0/0:61:57,4:57:2300:4:159:0,-3.67087,-192.462 0/0:73:69,4:69:2770:4:160:0,-7.19139,-234.618 0/0:7:7,0:7:272:0:0:0,-2.10721,-24.8435 dDocent_Contig_9644 164 . A G 131.304 . AB=0.3;ABP=9.95901;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=70;DPB=70;DPRA=0;EPP=20.3821;EPPR=137.642;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=308;QR=2274;RO=62;RPL=8;RPP=20.3821;RPPR=137.642;RPR=0;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=137.642;SRR=62;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:31:30,1:30:1110:1:40:0,-5.33625,-96.2067 0/0:19:18,1:18:650:1:39:0,-1.82301,-54.9278 0/1:20:14,6:14:514:6:229:-14.9542,0,-40.5765 ./.:.:.:.:.:.:.:. dDocent_Contig_9645 60 . A G 243.116 . AB=0.206349;ABP=50.1967;AC=1;AF=0.125;AN=8;AO=13;CIGAR=1X;DP=150;DPB=150;DPRA=2.17241;EPP=31.2394;EPPR=300.502;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=496;QR=5356;RO=137;RPL=13;RPP=31.2394;RPPR=300.502;RPR=0;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=137;SRP=300.502;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:45:45,0:45:1781:0:0:0,-13.5463,-160.516 0/0:15:15,0:15:570:0:0:0,-4.51545,-51.6306 0/1:63:50,13:50:1942:13:496:-26.0105,0,-156.035 0/0:27:27,0:27:1063:0:0:0,-8.12781,-95.958 dDocent_Contig_9646 35 . T A 48.806 . AB=0.2;ABP=14.7363;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=49;DPB=49;DPRA=1.32353;EPP=9.52472;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=119;QR=1844;RO=46;RPL=0;RPP=9.52472;RPPR=102.898;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:9:9,0:9:356:0:0:0,-2.70927,-32.4005 0/1:15:12,3:12:483:3:119:-6.57956,0,-39.3052 0/0:14:14,0:14:567:0:0:0,-4.21442,-51.372 0/0:11:11,0:11:438:0:0:0,-3.31133,-39.774 dDocent_Contig_9647 20 . T C 293.896 . AB=0.130653;ABP=238.806;AC=3;AF=0.375;AN=8;AO=34;CIGAR=1X;DP=310;DPB=310;DPRA=0;EPP=76.8404;EPPR=602.337;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.941176;PAIREDR=0.677536;PAO=0;PQA=0;PQR=0;PRO=0;QA=1362;QR=11121;RO=276;RPL=0;RPP=76.8404;RPPR=602.337;RPR=34;RUN=1;SAF=34;SAP=76.8404;SAR=0;SRF=276;SRP=602.337;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:98:88,10:88:3570:10:407:-7.48945,0,-291.805 0/0:111:103,8:103:4145:8:322:0,-4.06648,-343.656 0/1:62:51,11:51:2047:11:431:-20.4762,0,-165.752 0/1:39:34,5:34:1359:5:202:-6.82191,0,-110.832 dDocent_Contig_9648 9 . C T 1812.41 . AB=0.325991;ABP=62.7114;AC=4;AF=0.5;AN=8;AO=74;CIGAR=1X;DP=227;DPB=227;DPRA=0;EPP=163.699;EPPR=335.246;GTI=0;LEN=1;MEANALT=1;MQM=58.4189;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.986928;PAO=0;PQA=0;PQR=0;PRO=0;QA=2842;QR=5872;RO=153;RPL=0;RPP=163.699;RPPR=335.246;RPR=74;RUN=1;SAF=74;SAP=163.699;SAR=0;SRF=153;SRP=335.246;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:80:57,23:57:2186:23:870:-54.4662,0,-172.876 0/1:38:29,9:29:1115:9:350:-20.4129,0,-89.2132 0/1:53:29,24:29:1115:24:924:-67.4759,0,-84.6975 0/1:56:38,18:38:1456:18:698:-46.2842,0,-114.457 dDocent_Contig_9649 63 . C A 111.011 . AB=0.184211;ABP=35.9253;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=61;DPB=61;DPRA=0.826087;EPP=18.2106;EPPR=120.27;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=281;QR=2167;RO=54;RPL=7;RPP=18.2106;RPPR=120.27;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:20,5:20:808:5:202:-11.0363,0,-65.511 0/0:23:23,0:23:912:0:0:0,-6.92369,-82.379 0/1:13:11,2:11:447:2:79:-3.58385,0,-36.6725 ./.:.:.:.:.:.:.:. dDocent_Contig_9650 135 . G T 88.3772 . AB=0.5;ABP=3.0103;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=52;DPB=52;DPRA=0.545455;EPP=11.6962;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=140;QR=1618;RO=48;RPL=0;RPP=11.6962;RPPR=107.241;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=107.241;SRR=48;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:18:18,0:18:598:0:0:0,-5.41854,-54.1339 0/0:14:14,0:14:479:0:0:0,-4.21442,-43.4366 0/0:12:12,0:12:405:0:0:0,-3.61236,-36.7752 0/1:8:4,4:4:136:4:140:-10.5367,0,-10.1676 dDocent_Contig_9651 10 . G A 187.256 . AB=0.196429;ABP=47.8357;AC=2;AF=0.25;AN=8;AO=14;CIGAR=1X;DP=139;DPB=139;DPRA=1.32143;EPP=33.4109;EPPR=274.444;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=545;QR=4964;RO=125;RPL=0;RPP=33.4109;RPPR=274.444;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=125;SRP=274.444;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:55:52,3:52:2043:3:120:0,-5.36934,-172.864 0/0:28:28,0:28:1116:0:0:0,-8.42884,-100.728 0/1:36:29,7:29:1159:7:273:-14.0995,0,-93.7485 0/1:20:16,4:16:646:4:152:-8.02401,0,-52.4528 dDocent_Contig_9652 115 . T A 69.3411 . AB=0.170732;ABP=41.6201;AC=2;AF=0.25;AN=8;AO=10;CIGAR=1X;DP=112;DPB=112;DPRA=3.4;EPP=24.725;EPPR=224.5;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=349;QR=3439;RO=102;RPL=0;RPP=24.725;RPPR=224.5;RPR=10;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=224.5;SRR=102;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:61:58,3:58:1944:3:105:0,-8.56667,-165.437 0/1:34:30,4:30:1013:4:139:-2.61767,0,-81.2383 0/0:10:10,0:10:340:0:0:0,-3.0103,-30.9289 0/1:7:4,3:4:142:3:105:-7.68895,0,-11.0221 dDocent_Contig_9653 42 . A G 54.3544 . AB=0.25;ABP=9.52472;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=58;DPB=58;DPRA=0.782609;EPP=9.52472;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.781818;PAO=0;PQA=0;PQR=0;PRO=0;QA=112;QR=2163;RO=55;RPL=0;RPP=9.52472;RPPR=122.441;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:9,3:9:326:3:112:-6.83338,0,-26.0597 0/0:23:23,0:23:907:0:0:0,-6.92369,-81.9361 0/0:15:15,0:15:605:0:0:0,-4.51545,-54.7872 0/0:8:8,0:8:325:0:0:0,-2.40824,-29.6196 dDocent_Contig_9654 145 . T C 58.3372 . AB=0.16;ABP=28.1125;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=104;DPB=104;DPRA=0.949367;EPP=11.6962;EPPR=220.158;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.82;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=163;QR=3946;RO=100;RPL=0;RPP=11.6962;RPPR=220.158;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=220.158;SRR=100;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:32:32,0:32:1245:0:0:0,-9.63296,-112.288 0/0:41:41,0:41:1627:0:0:0,-12.3422,-146.663 0/0:6:6,0:6:238:0:0:0,-1.80618,-21.7918 0/1:25:21,4:21:836:4:163:-7.53268,0,-68.0271 dDocent_Contig_9655 31 . T C 223.703 . AB=0.30303;ABP=14.1309;AC=2;AF=0.25;AN=8;AO=10;CIGAR=1X;DP=50;DPB=50;DPRA=1.94118;EPP=24.725;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.7;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=388;QR=1570;RO=40;RPL=0;RPP=24.725;RPPR=89.8692;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:10:10,0:10:389:0:0:0,-3.0103,-35.3636 0/1:17:15,2:15:586:2:81:-2.56822,0,-47.9614 0/1:16:8,8:8:316:8:307:-23.1716,0,-23.9876 0/0:7:7,0:7:279:0:0:0,-2.10721,-25.4811 dDocent_Contig_9656 60 . T C 340.568 . AB=0.226667;ABP=51.6802;AC=2;AF=0.25;AN=8;AO=20;CIGAR=1X;DP=184;DPB=184;DPRA=0.625;EPP=46.4397;EPPR=359.132;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.987805;PAO=0;PQA=0;PQR=0;PRO=0;QA=778;QR=6377;RO=164;RPL=20;RPP=46.4397;RPPR=359.132;RPR=0;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=164;SRP=359.132;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:55:43,12:43:1672:12:459:-25.0952,0,-134.167 0/0:64:64,0:64:2486:0:0:0,-19.2659,-223.907 0/0:45:42,3:42:1648:3:119:0,-2.45095,-137.468 0/1:20:15,5:15:571:5:200:-12.3595,0,-45.7045 dDocent_Contig_9657 44 . G A 104.955 . AB=0.176471;ABP=33.9218;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=122;DPB=122;DPRA=1.15909;EPP=16.0391;EPPR=254.901;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=245;QR=4566;RO=116;RPL=0;RPP=16.0391;RPPR=254.901;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=116;SRP=254.901;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:53:53,0:53:2093:0:0:0,-15.9546,-188.565 0/1:34:28,6:28:1086:6:245:-12.1945,0,-87.795 0/0:27:27,0:27:1069:0:0:0,-8.12781,-96.5052 0/0:8:8,0:8:318:0:0:0,-2.40824,-28.9867 dDocent_Contig_9659 93 . G C 574.575 . AB=0.322581;ABP=28.4375;AC=4;AF=0.5;AN=8;AO=30;CIGAR=1X;DP=93;DPB=93;DPRA=0;EPP=68.1545;EPPR=139.813;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=56.2222;NS=4;NUMALT=1;ODDS=0;PAIRED=0.733333;PAIREDR=0.793651;PAO=0;PQA=0;PQR=0;PRO=0;QA=1017;QR=2111;RO=63;RPL=30;RPP=68.1545;RPPR=139.813;RPR=0;RUN=1;SAF=30;SAP=68.1545;SAR=0;SRF=63;SRP=139.813;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:20,6:20:686:6:210:-11.4157,0,-52.5148 0/1:19:12,7:12:380:7:245:-16.6717,0,-26.3475 0/1:25:15,10:15:503:10:343:-23.676,0,-37.5038 0/1:23:16,7:16:542:7:219:-13.0922,0,-42.1781 dDocent_Contig_9660 105 . N A 93.312 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=3X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=100;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:3:0,3:0:0:3:100:-9.33066,-0.90309,0 .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. dDocent_Contig_9661 44 . G T 50.4812 . AB=0.148148;ABP=32.0437;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=108;DPB=108;DPRA=1;EPP=11.6962;EPPR=228.843;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=161;QR=4144;RO=104;RPL=0;RPP=11.6962;RPPR=228.843;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=104;SRP=228.843;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:41:41,0:41:1633:0:0:0,-12.3422,-147.204 0/1:27:23,4:23:907:4:161:-6.74709,0,-73.8108 0/0:31:31,0:31:1235:0:0:0,-9.33193,-111.426 0/0:9:9,0:9:369:0:0:0,-2.70927,-33.5755 dDocent_Contig_9662 64 . A G 3081.61 . AB=0.672727;ABP=45.7686;AC=3;AF=0.375;AN=8;AO=114;CIGAR=1X;DP=201;DPB=201;DPRA=0;EPP=250.558;EPPR=191.928;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4135;QR=3116;RO=87;RPL=114;RPP=250.558;RPPR=191.928;RPR=0;RUN=1;SAF=114;SAP=250.558;SAR=0;SRF=87;SRP=191.928;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:138:36,102:36:1285:102:3699:-291.549,0,-74.404 0/0:36:33,3:33:1170:3:109:0,-0.669078,-95.4319 0/1:13:7,6:7:254:6:220:-16.2421,0,-19.2972 0/1:14:11,3:11:407:3:107:-5.76739,0,-32.7639 dDocent_Contig_9663 29 . G A 857.37 . AB=0.148883;ABP=434.551;AC=3;AF=0.375;AN=8;AO=67;CIGAR=1X;DP=663;DPB=663;DPRA=0;EPP=148.499;EPPR=1279.89;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.9044;NS=4;NUMALT=1;ODDS=2.77556e-17;PAIRED=0.910448;PAIREDR=0.176174;PAO=0;PQA=0;PQR=0;PRO=0;QA=2621;QR=23235;RO=596;RPL=0;RPP=148.499;RPPR=1297.21;RPR=67;RUN=1;SAF=67;SAP=148.499;SAR=0;SRF=594;SRP=1279.89;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:260:253,7:253:9828:7:271:0,-53.5134,-858.824 0/1:165:143,22:143:5647:22:843:-26.5075,0,-458.412 0/1:151:133,18:133:5163:18:708:-18.5892,0,-419.117 0/1:87:67,20:67:2597:20:799:-46.0382,0,-207.684 dDocent_Contig_9664 209 . N G 143.25 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=7.37776;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=155;QR=0;RO=0;RPL=4;RPP=11.6962;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:4:0,4:0:0:4:155:-14.3247,-1.20412,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_9665 10 . C A 737.02 . AB=0.375;ABP=13.8677;AC=4;AF=0.5;AN=8;AO=30;CIGAR=1X;DP=80;DPB=80;DPRA=0;EPP=68.1545;EPPR=109.412;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.979592;PAO=0;PQA=0;PQR=0;PRO=0;QA=1154;QR=1993;RO=49;RPL=0;RPP=68.1545;RPPR=109.412;RPR=30;RUN=1;SAF=30;SAP=68.1545;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:16,9:16:646:9:360:-25.234,0,-50.9482 0/1:23:15,8:15:614:8:306:-20.9695,0,-48.6728 0/1:19:14,5:14:570:5:202:-12.8423,0,-45.922 0/1:13:4,8:4:163:8:286:-22.0542,0,-11.0371 dDocent_Contig_9666 32 . C A 638.583 . AB=0.438596;ABP=4.877;AC=4;AF=0.5;AN=8;AO=25;CIGAR=1X;DP=57;DPB=57;DPRA=0;EPP=57.2971;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.96875;PAO=0;PQA=0;PQR=0;PRO=0;QA=966;QR=1288;RO=32;RPL=0;RPP=57.2971;RPPR=72.4974;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:4:2,2:2:82:2:82:-6.57556,0,-6.57556 0/1:17:9,8:9:361:8:303:-22.504,0,-27.7355 0/1:14:9,5:9:357:5:198:-13.9818,0,-28.2762 0/1:22:12,10:12:488:10:383:-28.1949,0,-37.6483 dDocent_Contig_9669 11 . G A 377.954 . AB=0.186916;ABP=94.1107;AC=4;AF=0.5;AN=8;AO=20;CIGAR=1X1M;DP=107;DPB=107;DPRA=0;EPP=46.4397;EPPR=185.414;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0.47619;PAO=0;PQA=0;PQR=0;PRO=0;QA=805;QR=3350;RO=84;RPL=0;RPP=46.4397;RPPR=185.414;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=84;SRP=185.414;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:32:26,0,6:26:1043:0,6:0,246:-12.8872,-20.7139,-106.644,0,-86.3375,-84.5313 0|1:32:25,0,7:25:1002:0,7:0,275:-15.4845,-23.0102,-105.565,0,-82.9485,-80.8413 0|1:34:29,0,5:29:1149:0,5:0,203:-8.41804,-17.1479,-111.713,0,-94.9687,-93.4635 0|1:9:4,3,2:4:156:3,2:117,81:-8.40352,0,-11.909,-2.92252,-6.12792,-15.1424 dDocent_Contig_9671 8 . T G 55.2918 . AB=0.272727;ABP=7.94546;AC=1;AF=0.125;AN=8;AO=3;CIGAR=2X;DP=45;DPB=45;DPRA=0.970588;EPP=9.52472;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=113;QR=1595;RO=42;RPL=0;RPP=9.52472;RPPR=94.2121;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:16:16,0:16:604:0:0:0,-4.81648,-54.6948 0|1:11:8,3:8:309:3:113:-7.22808,0,-24.8616 0|0:14:14,0:14:526:0:0:0,-4.21442,-47.6798 0|0:4:4,0:4:156:0:0:0,-1.20412,-14.4173 dDocent_Contig_9672 80 . T C 304.89 . AB=0.407407;ABP=5.02092;AC=1;AF=0.125;AN=8;AO=11;CIGAR=1X;DP=86;DPB=86;DPRA=1.37288;EPP=26.8965;EPPR=165.871;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=444;QR=3036;RO=75;RPL=11;RPP=26.8965;RPPR=165.871;RPR=0;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=75;SRP=165.871;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:40:40,0:40:1616:0:0:0,-12.0412,-145.666 0/1:27:16,11:16:649:11:444:-32.188,0,-50.615 0/0:14:14,0:14:568:0:0:0,-4.21442,-51.4626 0/0:5:5,0:5:203:0:0:0,-1.50515,-18.6531 dDocent_Contig_9673 6 . C A 1573.08 . AB=0.433333;ABP=8.80089;AC=4;AF=0.5;AN=8;AO=65;CIGAR=1X2M1X;DP=150;DPB=150;DPRA=0;EPP=144.156;EPPR=187.585;GTI=0;LEN=1;MEANALT=1;MQM=54.1692;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=0.830769;PAIREDR=0.988235;PAO=0;PQA=0;PQR=0;PRO=0;QA=2380;QR=3257;RO=85;RPL=0;RPP=144.156;RPPR=187.585;RPR=65;RUN=1;SAF=65;SAP=144.156;SAR=0;SRF=85;SRP=187.585;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:40:18,22:18:691:22:804:-58.9167,0,-50.4829 0|1:48:24,24:24:917:24:882:-61.0492,0,-68.3981 0|1:44:27,17:27:1036:17:620:-42.698,0,-80.3046 0|1:18:16,2:16:613:2:74:-1.60734,0,-50.0911 dDocent_Contig_9674 28 . C T 185.021 . AB=0.296296;ABP=12.7417;AC=2;AF=0.25;AN=8;AO=8;CIGAR=1X;DP=51;DPB=51;DPRA=1.125;EPP=20.3821;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.813953;PAO=0;PQA=0;PQR=0;PRO=0;QA=325;QR=1717;RO=43;RPL=0;RPP=20.3821;RPPR=96.3836;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:16:16,0:16:638:0:0:0,-4.81648,-57.7538 0/1:23:17,6:17:681:6:243:-15.3245,0,-54.6943 0/1:4:2,2:2:81:2:82:-6.57556,0,-6.48161 0/0:8:8,0:8:317:0:0:0,-2.40824,-28.8944 dDocent_Contig_9675 15 . T A 113.352 . AB=0.230769;ABP=19.3799;AC=2;AF=0.25;AN=8;AO=6;CIGAR=1X;DP=40;DPB=40;DPRA=1.85714;EPP=16.0391;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=242;QR=1376;RO=34;RPL=0;RPP=16.0391;RPPR=76.8404;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:10:10,0:10:406:0:0:0,-3.0103,-36.9004 0/1:13:10,3:10:409:3:120:-7.27392,0,-33.2572 0/1:13:10,3:10:397:3:122:-7.4591,0,-32.1746 0/0:4:4,0:4:164:0:0:0,-1.20412,-15.1499 dDocent_Contig_9677 102 . C A 47.861 . AB=0.128205;ABP=49.8362;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=130;DPB=130;DPRA=1.28571;EPP=13.8677;EPPR=274.444;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=195;QR=4780;RO=125;RPL=0;RPP=13.8677;RPPR=274.444;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=274.444;SRR=125;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:39:34,5:34:1304:5:195:-6.18403,0,-105.908 0/0:35:35,0:35:1344:0:0:0,-10.536,-121.243 0/0:49:49,0:49:1859:0:0:0,-14.7505,-167.553 0/0:7:7,0:7:273:0:0:0,-2.10721,-24.938 dDocent_Contig_9678 7 . A T 762.055 . AB=0.509091;ABP=3.04978;AC=2;AF=0.25;AN=8;AO=28;CIGAR=1X;DP=147;DPB=147;DPRA=0.597826;EPP=63.8115;EPPR=261.416;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.97479;PAO=0;PQA=0;PQR=0;PRO=0;QA=1061;QR=4531;RO=119;RPL=0;RPP=63.8115;RPPR=261.416;RPR=28;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=119;SRP=261.416;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:66:66,0:66:2501:0:0:0,-19.868,-225.293 0/1:46:23,23:23:877:23:880:-65.6724,0,-65.4033 0/0:26:26,0:26:999:0:0:0,-7.82678,-90.2218 0/1:9:4,5:4:154:5:181:-13.9311,0,-11.5242 dDocent_Contig_9680 30 . T C 3653.77 . AB=0.491071;ABP=3.08785;AC=1;AF=0.125;AN=8;AO=55;CIGAR=1X2M3D1M;DP=226;DPB=169;DPRA=0;EPP=122.441;EPPR=204.957;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2178;QR=3576;RO=93;RPL=0;RPP=122.441;RPPR=204.957;RPR=55;RUN=1;SAF=55;SAP=122.441;SAR=0;SRF=93;SRP=204.957;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:68:0,49,19:0:0:49,19:1947,734:-220.963,-60.6655,-45.915,-160.687,0,-154.967 0|0:88:63,0,25:63:2427:0,25:0,945:-58.8677,-77.8326,-277.11,0,-199.657,-192.131 0|0:26:15,0,11:15:595:0,11:0,388:-27.4183,-31.9338,-80.9391,0,-49.3763,-46.065 0|0:44:15,6,23:15:554:6,23:231,856:-65.5256,-51.074,-94.5743,0,-26.3276,-38.3727 dDocent_Contig_9681 8 . T G 1693.08 . AB=0.398693;ABP=16.6494;AC=5;AF=0.625;AN=8;AO=64;CIGAR=1X;DP=156;DPB=156;DPRA=0;EPP=141.985;EPPR=202.786;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2438;QR=3527;RO=92;RPL=0;RPP=141.985;RPPR=202.786;RPR=64;RUN=1;SAF=64;SAP=141.985;SAR=0;SRF=92;SRP=202.786;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:78:55,23:55:2100:23:881:-56.1294,0,-165.753 0/1:52:19,33:19:729:33:1258:-97.8587,0,-50.2872 0/1:23:18,5:18:698:5:184:-9.99293,0,-56.2305 1/1:3:0,3:0:0:3:115:-10.7249,-0.90309,0 dDocent_Contig_9682 176 . C T 1512.97 . AB=0.619048;ABP=13.3506;AC=4;AF=0.5;AN=8;AO=52;CIGAR=1X;DP=84;DPB=84;DPRA=0;EPP=69.8248;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2029;QR=1271;RO=32;RPL=46;RPP=69.8248;RPPR=72.4974;RPR=6;RUN=1;SAF=0;SAP=115.927;SAR=52;SRF=0;SRP=72.4974;SRR=32;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:6,16:6:229:16:612:-48.7889,0,-14.3511 0/1:17:12,5:12:482:5:201:-13.353,0,-38.6139 0/1:26:7,19:7:279:19:761:-60.9849,0,-17.6528 0/1:19:7,12:7:281:12:455:-35.5676,0,-19.9421 dDocent_Contig_9683 9 . C T 130.731 . AB=0.352941;ABP=6.20364;AC=2;AF=0.25;AN=8;AO=6;CIGAR=1X;DP=44;DPB=44;DPRA=0.62963;EPP=16.0391;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.894737;PAO=0;PQA=0;PQR=0;PRO=0;QA=231;QR=1466;RO=38;RPL=0;RPP=16.0391;RPPR=85.5263;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:15:15,0:15:573:0:0:0,-4.51545,-51.9113 0/0:12:12,0:12:464:0:0:0,-3.61236,-42.1116 0/1:12:7,5:7:273:5:192:-14.0376,0,-21.3257 0/1:5:4,1:4:156:1:39:-2.39141,0,-12.9121 dDocent_Contig_9684 40 . A G 605.189 . AB=0.358209;ABP=14.7103;AC=4;AF=0.5;AN=8;AO=24;CIGAR=1X;DP=67;DPB=67;DPRA=0;EPP=55.1256;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=0.375;PAIREDR=0.976744;PAO=0;PQA=0;PQR=0;PRO=0;QA=962;QR=1732;RO=43;RPL=0;RPP=55.1256;RPPR=96.3836;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:8,7:8:327:7:280:-21.0552,0,-25.2847 0/1:21:11,10:11:443:10:400:-30.0374,0,-33.9043 0/1:13:11,2:11:444:2:80:-3.6784,0,-36.403 0/1:18:13,5:13:518:5:202:-13.1435,0,-41.5467 dDocent_Contig_9685 16 . C T 204.072 . AB=0.380952;ABP=5.59539;AC=2;AF=0.25;AN=8;AO=9;CIGAR=1X;DP=51;DPB=51;DPRA=2.5;EPP=22.5536;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=367;QR=1695;RO=42;RPL=0;RPP=22.5536;RPPR=94.2121;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:24:23,1:23:926:1:41:0,-3.13015,-79.5456 0/1:19:12,7:12:486:7:285:-20.3048,0,-38.3715 0/1:2:1,1:1:40:1:41:-3.49251,0,-3.39362 0/0:6:6,0:6:243:0:0:0,-1.80618,-22.2476 dDocent_Contig_9686 16 . T C 43.7775 . AB=0;ABP=0;AC=0;AF=0;AN=8;AO=2;CIGAR=1X3M1X5M1X5M;DP=56;DPB=56;DPRA=26;EPP=7.35324;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=27;MQMR=60;NS=4;NUMALT=2;ODDS=3.46945e-18;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=54;QR=1952;RO=50;RPL=0;RPP=7.35324;RPPR=111.584;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:18:15,0,3:15:590:0,3:0,120:-5.76936,-10.2848,-58.8128,0,-48.9265,-48.0234 0|0:26:24,2,0:24:930:2,0:54,0:0,-3.26791,-79.4516,-7.22472,-80.0537,-83.7592 0|0:1:1,0,0:1:40:0,0:0,0:0,-0.30103,-3.99568,-0.30103,-3.99568,-3.99568 0|0:11:10,0,1:10:392:0,1:0,40:-0.684349,-3.69465,-35.9224,0,-32.6266,-32.3255 dDocent_Contig_9687 56 . T A 1935.99 . AB=0.309942;ABP=56.6622;AC=4;AF=0.5;AN=8;AO=53;CIGAR=2X1M2X;DP=171;DPB=171;DPRA=0;EPP=118.098;EPPR=170.214;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.987013;PAO=0;PQA=0;PQR=0;PRO=0;QA=2069;QR=3082;RO=77;RPL=53;RPP=118.098;RPPR=170.214;RPR=0;RUN=1;SAF=53;SAP=118.098;SAR=0;SRF=77;SRP=170.214;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:46:23,16,7:23:918:16,7:633,277:-45.1708,0,-70.7934,-29.2972,-52.8133,-102.799 0|1:45:8,8,29:8:323:8,29:317,1143:-91.6248,-67.9406,-92.1618,0,-0.542895,-17.9013 0|1:47:30,5,12:30:1202:5,12:200,464:-29.0671,-21.6191,-119.153,0,-82.5543,-95.4169 0|1:33:16,12,5:16:639:12,5:484,185:-35.1039,0,-49.0408,-24.7998,-37.5297,-75.9232 dDocent_Contig_9689 1 . N G 97.9607 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=105;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:105:-9.79553,-0.90309,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_9690 40 . T A 37.8127 . AB=0.111111;ABP=73.9451;AC=2;AF=0.25;AN=8;AO=7;CIGAR=1X;DP=158;DPB=158;DPRA=0.624242;EPP=18.2106;EPPR=330.903;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.9801;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.986755;PAO=0;PQA=0;PQR=0;PRO=0;QA=277;QR=5875;RO=151;RPL=0;RPP=18.2106;RPPR=330.903;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=151;SRP=330.903;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:55:55,0:55:2168:0:0:0,-16.5566,-195.312 0/0:49:48,1:48:1859:1:38:0,-10.9532,-163.737 0/1:30:26,4:26:986:4:157:-5.47628,0,-80.01 0/1:24:22,2:22:862:2:82:-0.554958,0,-70.6639 dDocent_Contig_9691 39 . A G 674.315 . AB=0.489796;ABP=3.05462;AC=3;AF=0.375;AN=8;AO=24;CIGAR=1X;DP=66;DPB=66;DPRA=0.960784;EPP=55.1256;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=961;QR=1664;RO=42;RPL=0;RPP=55.1256;RPPR=94.2121;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:17:17,0:17:682:0:0:0,-5.11751,-61.7097 0/1:26:9,17:9:368:17:684:-54.0607,0,-25.6586 0/1:13:9,4:9:349:4:159:-10.7774,0,-27.8519 0/1:10:7,3:7:265:3:118:-7.99128,0,-21.1968 dDocent_Contig_9693 27 . T A 58.8241 . AB=0.15625;ABP=35.8538;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=64;DPB=64;DPRA=0;EPP=18.2106;EPPR=126.784;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=282;QR=2138;RO=57;RPL=0;RPP=18.2106;RPPR=126.784;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:32:30,2:30:1119:2:80:0,-2.04138,-93.4142 0/1:26:22,4:22:827:4:161:-7.04812,0,-66.9232 0/1:6:5,1:5:192:1:41:-2.28839,0,-15.8437 ./.:.:.:.:.:.:.:. dDocent_Contig_9694 122 . G T 474.815 . AB=0.468085;ABP=3.42611;AC=3;AF=0.375;AN=8;AO=22;CIGAR=1X;DP=53;DPB=53;DPRA=2.61111;EPP=50.7827;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=733;QR=1068;RO=31;RPL=0;RPP=50.7827;RPPR=70.3259;RPR=22;RUN=1;SAF=0;SAP=50.7827;SAR=22;SRF=0;SRP=70.3259;SRR=31;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:8,16:8:277:16:525:-40.3379,0,-18.0421 0/1:19:14,5:14:481:5:174:-10.2824,0,-37.8983 0/0:6:6,0:6:210:0:0:0,-1.80618,-19.2425 0/1:4:3,1:3:100:1:34:-2.19479,0,-8.12641 dDocent_Contig_9695 12 . T A 866 . AB=0.152542;ABP=64.8789;AC=2;AF=0.25;AN=8;AO=9;CIGAR=2M1X1M;DP=143;DPB=128.5;DPRA=0;EPP=22.5536;EPPR=155.013;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=4;NUMALT=4;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=360;QR=2747;RO=70;RPL=0;RPP=22.5536;RPPR=155.013;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=70;SRP=155.013;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:44:25,6,5,2,6:25:984:6,5,2,6:210,204,68,243:-12.5219,-2.98068,-82.116,-3.20688,-67.0887,-82.6586,-14.5397,-78.4123,-78.6533,-94.885,0,-63.8833,-64.1233,-75.4478,-79.1519 0|0:59:20,22,3,14,0:20:785:22,3,14,0:833,120,569,0:-62.2539,0,-57.9266,-58.3885,-54.6639,-122.043,-21.334,-17.6128,-76.0089,-81.6807,-68.2745,-64.5492,-122.946,-85.8951,-132.831 0|0:25:18,0,6,1,0:18:712:0,6,1,0:0,211,41,0:-11.6974,-17.1159,-75.7361,0,-58.5811,-56.7749,-13.7235,-72.351,-55.1962,-72.05,-17.1159,-75.7361,-58.5811,-72.351,-75.7361 0|1:15:7,1,3,1,3:7:266:1,3,1,3:39,104,41,117:-7.51759,-6.41696,-27.9312,-1.19161,-19.7896,-22.0928,-6.23593,-24.8456,-19.6096,-27.7516,0,-18.6122,-13.3779,-18.4322,-20.9163 dDocent_Contig_9696 8 . T C 1949.36 . AB=0.473333;ABP=3.93679;AC=4;AF=0.5;AN=8;AO=71;CIGAR=1X;DP=150;DPB=150;DPRA=0;EPP=148.621;EPPR=174.557;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=0.985915;PAIREDR=0.974684;PAO=0;PQA=0;PQR=0;PRO=0;QA=2731;QR=3035;RO=79;RPL=0;RPP=157.185;RPPR=174.557;RPR=71;RUN=1;SAF=70;SAP=148.621;SAR=1;SRF=79;SRP=174.557;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:63:51,12:51:1961:12:459:-22.6941,0,-157.766 0/1:31:10,21:10:384:21:813:-64.1623,0,-25.5838 0/1:19:2,17:2:78:17:651:-53.2056,0,-1.6839 0/1:37:16,21:16:612:21:808:-61.9066,0,-44.2807 dDocent_Contig_9698 26 . T C 407.858 . AB=0.246575;ABP=43.7328;AC=2;AF=0.25;AN=8;AO=21;CIGAR=1X;DP=186;DPB=186;DPRA=0.906667;EPP=48.6112;EPPR=361.303;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.7879;NS=4;NUMALT=1;ODDS=0;PAIRED=0.904762;PAIREDR=0.551515;PAO=0;PQA=0;PQR=0;PRO=0;QA=844;QR=6578;RO=165;RPL=0;RPP=48.6112;RPPR=361.303;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=165;SRP=361.303;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:50:50,0:50:1998:0:0:0,-15.0515,-180.008 0/0:63:60,3:60:2373:3:117:0,-8.05519,-202.742 0/1:30:23,7:23:915:7:283:-16.8125,0,-73.6221 0/1:43:32,11:32:1292:11:444:-27.3713,0,-103.601 dDocent_Contig_9699 39 . T C 49.5092 . AB=0.121951;ABP=53.9075;AC=2;AF=0.25;AN=8;AO=5;CIGAR=1X;DP=90;DPB=90;DPRA=0.836735;EPP=13.8677;EPPR=187.585;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=204;QR=3224;RO=85;RPL=0;RPP=13.8677;RPPR=187.585;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=85;SRP=187.585;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:42:42,0:42:1583:0:0:0,-12.6433,-142.729 0/1:25:23,2:23:871:2:81:-0.159984,0,-71.1722 0/1:16:13,3:13:499:3:123:-6.64831,0,-40.4318 0/0:7:7,0:7:271:0:0:0,-2.10721,-24.7531 dDocent_Contig_9700 128 . A C 48.0519 . AB=0.1875;ABP=30.1537;AC=3;AF=0.375;AN=8;AO=6;CIGAR=1X;DP=42;DPB=42;DPRA=1.06667;EPP=16.0391;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=205;QR=1245;RO=36;RPL=0;RPP=16.0391;RPPR=81.1833;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=81.1833;SRR=36;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:10:10,0:10:340:0:0:0,-3.0103,-30.9293 0/1:17:14,3:14:487:3:100:-4.21286,0,-39.0437 0/1:6:5,1:5:175:1:35:-1.69245,0,-14.2875 0/1:9:7,2:7:243:2:70:-3.93813,0,-19.4996 dDocent_Contig_9702 98 . N G 610.815 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=19;CIGAR=2X;DP=19;DPB=19;DPRA=0;EPP=44.2683;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=662;QR=0;RO=0;RPL=19;RPP=44.2683;RPPR=0;RPR=0;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:9:0,9:0:0:9:315:-28.6888,-2.70927,0 1|1:1:0,1:0:0:1:35:-3.49863,-0.30103,0 .:.:.:.:.:.:.:. 1|1:9:0,9:0:0:9:312:-28.4162,-2.70927,0 dDocent_Contig_9704 9 . C A 1372.22 . AB=0.0857143;ABP=55.1877;AC=0;AF=0;AN=8;AO=3;CIGAR=2X;DP=121;DPB=121;DPRA=0;EPP=9.52472;EPPR=152.842;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.666667;PAIREDR=0.768116;PAO=0;PQA=0;PQR=0;PRO=0;QA=119;QR=2688;RO=69;RPL=0;RPP=9.52472;RPPR=152.842;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=69;SRP=152.842;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:29:15,0,14:15:592:0,14:0,569:-42.8224,-47.3378,-96.0441,0,-49.1065,-44.8921 0|0:35:22,3,10:22:858:3,10:119,404:-26.6773,-23.5056,-93.1203,0,-60.7246,-67.5111 0|0:28:13,0,15:13:502:0,15:0,609:-46.6799,-50.5933,-91.8106,0,-41.6122,-37.0967 0|0:29:19,0,10:19:736:0,10:0,409:-28.4407,-34.1603,-94.6067,0,-60.8475,-57.8372 dDocent_Contig_9705 29 . C T 263.318 . AB=0.0512821;ABP=71.2168;AC=0;AF=0;AN=8;AO=2;CIGAR=7M2X2M;DP=81;DPB=80.1818;DPRA=9.75;EPP=7.35324;EPPR=126.784;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=4;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=72;QR=2253;RO=57;RPL=0;RPP=7.35324;RPPR=126.784;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:39:27,2,1,2,7:27:1065:2,1,2,7:77,33,72,285:-15.4079,-17.2225,-104.25,-20.8728,-102.186,-108.198,-17.6689,-98.9814,-102.628,-104.693,0,-81.3383,-84.9857,-81.7814,-85.5448 0|0:29:19,0,6,0,3:19:755:0,6,0,3:0,243,0,121:-14.3179,-20.0375,-82.1921,0,-62.1533,-60.3472,-20.0375,-82.1921,-62.1533,-82.1921,-10.0639,-72.2175,-52.1784,-72.2175,-71.3144 0|0:9:7,0,1,0,0:7:274:0,1,0,0:0,33,0,0:-0.52628,-2.63349,-25.1835,0,-22.5222,-22.2212,-2.63349,-25.1835,-22.5222,-25.1835,-2.63349,-25.1835,-22.5222,-25.1835,-25.1835 0|0:4:4,0,0,0,0:4:159:0,0,0,0:0,0,0,0:0,-1.20412,-14.6923,-1.20412,-14.6923,-14.6923,-1.20412,-14.6923,-14.6923,-14.6923,-1.20412,-14.6923,-14.6923,-14.6923,-14.6923 dDocent_Contig_9706 30 . T C 73.3458 . AB=0.162162;ABP=39.6906;AC=4;AF=0.5;AN=8;AO=6;CIGAR=1X;DP=37;DPB=37;DPRA=0;EPP=16.0391;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=242;QR=1246;RO=31;RPL=0;RPP=16.0391;RPPR=70.3259;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:11,1:11:436:1:38:-0.184909,0,-35.9798 0/1:6:5,1:5:201:1:40:-2.1895,0,-16.6649 0/1:10:7,3:7:285:3:123:-8.45449,0,-23.0141 0/1:9:8,1:8:324:1:41:-1.3853,0,-26.8199 dDocent_Contig_9707 38 . G A 4657.41 . AB=0.578313;ABP=11.8532;AC=5;AF=0.625;AN=8;AO=150;CIGAR=1X;DP=225;DPB=225;DPRA=0;EPP=328.731;EPPR=165.871;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=0.986667;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5962;QR=2962;RO=75;RPL=0;RPP=328.731;RPPR=165.871;RPR=150;RUN=1;SAF=150;SAP=328.731;SAR=0;SRF=75;SRP=165.871;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:59:5,54:5:179:54:2166:-178.658,-1.31176,0 0/1:20:11,9:11:451:9:353:-26.1084,0,-34.9251 0/1:93:37,56:37:1472:56:2206:-170.726,0,-104.725 0/1:53:22,31:22:860:31:1237:-95.6455,0,-61.7543 dDocent_Contig_9708 16 . T C 210.083 . AB=0.3;ABP=13.4334;AC=2;AF=0.25;AN=8;AO=10;CIGAR=1X;DP=61;DPB=61;DPRA=1.02222;EPP=24.725;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=403;QR=2022;RO=51;RPL=0;RPP=24.725;RPPR=113.755;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:13,4:13:515:4:161:-9.75739,0,-41.5756 0/0:15:15,0:15:587:0:0:0,-4.51545,-53.1615 0/1:13:8,5:8:309:5:202:-14.6487,0,-24.254 0/0:16:15,1:15:611:1:40:0,-0.820801,-51.3316 dDocent_Contig_9709 127 . A G 64.2975 . AB=0.25;ABP=11.6962;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=53;DPB=53;DPRA=1.2973;EPP=11.6962;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=55.9184;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.877551;PAO=0;PQA=0;PQR=0;PRO=0;QA=140;QR=1675;RO=49;RPL=0;RPP=11.6962;RPPR=109.412;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=109.412;SRR=49;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:26:26,0:26:898:0:0:0,-7.82678,-80.6798 0/0:9:9,0:9:297:0:0:0,-2.70927,-23.8716 0/1:16:12,4:12:411:4:140:-8.12845,0,-31.3042 0/0:2:2,0:2:69:0:0:0,-0.60206,-6.55266 dDocent_Contig_9710 29 . G A 96.0294 . AB=0.15;ABP=66.8516;AC=2;AF=0.25;AN=8;AO=9;CIGAR=1X;DP=83;DPB=83;DPRA=2.6087;EPP=22.5536;EPPR=163.699;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.851351;PAO=0;PQA=0;PQR=0;PRO=0;QA=337;QR=2941;RO=74;RPL=0;RPP=22.5536;RPPR=163.699;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=74;SRP=163.699;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:37:31,6:31:1236:6:218:-8.82865,0,-100.374 0/0:12:12,0:12:467:0:0:0,-3.61236,-42.3778 0/1:23:20,3:20:791:3:119:-4.17149,0,-64.5859 0/0:11:11,0:11:447:0:0:0,-3.31133,-40.5861 dDocent_Contig_9711 12 . G A 143.908 . AB=0.428571;ABP=3.63072;AC=2;AF=0.25;AN=8;AO=6;CIGAR=1X;DP=33;DPB=33;DPRA=0.736842;EPP=16.0391;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=236;QR=1057;RO=27;RPL=0;RPP=16.0391;RPPR=61.6401;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:12:12,0:12:470:0:0:0,-3.61236,-42.6457 0/1:6:3,3:3:121:3:121:-9.47381,0,-9.47402 0/1:8:5,3:5:205:3:115:-8.31497,0,-16.4268 0/0:7:7,0:7:261:0:0:0,-2.10721,-23.84 dDocent_Contig_9713 7 . A T 620.602 . AB=0.302083;ABP=35.6729;AC=4;AF=0.5;AN=8;AO=29;CIGAR=1X;DP=96;DPB=96;DPRA=0;EPP=65.983;EPPR=146.327;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1078;QR=2521;RO=66;RPL=0;RPP=65.983;RPPR=146.327;RPR=29;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=66;SRP=146.327;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:17,9:17:639:9:350:-24.0346,0,-50.0157 0/1:16:12,4:12:461:4:148:-8.86463,0,-37.0239 0/1:35:23,12:23:885:12:426:-28.1326,0,-69.4327 0/1:19:14,4:14:536:4:154:-8.42639,0,-42.7765 dDocent_Contig_9714 56 . T A 162.504 . AB=0;ABP=0;AC=0;AF=0;AN=8;AO=2;CIGAR=2M3X2M1X2M;DP=88;DPB=88;DPRA=1.70588;EPP=7.35324;EPPR=155.013;GTI=0;LEN=1;MEANALT=2;MQM=41;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=77;QR=2712;RO=70;RPL=0;RPP=7.35324;RPPR=155.013;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=70;SRP=155.013;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:22:14,0,8,0:14:541:0,8,0:0,215,0:-11.17,-15.3844,-59.9089,0,-44.82,-42.4118,-15.3844,-59.9089,-44.82,-59.9089 0|0:17:17,0,0,0:17:664:0,0,0:0,0,0:0,-5.11751,-60.0938,-5.11751,-60.0938,-60.0938,-5.11751,-60.0938,-60.0938,-60.0938 0|0:20:13,2,5,0:13:499:2,5,0:45,167,0:-8.47832,-9.16176,-49.5724,0,-37.8703,-39.5991,-12.3917,-50.1745,-41.1043,-53.4162 0|0:29:26,0,1,2:26:1008:0,1,2:0,28,77:0,-7.82678,-90.6941,-5.91697,-88.7504,-88.4494,-1.7717,-84.7173,-82.774,-84.1152 dDocent_Contig_9715 49 . G A 1059.44 . AB=0.5;ABP=3.0103;AC=3;AF=0.375;AN=8;AO=39;CIGAR=1X;DP=101;DPB=101;DPRA=0;EPP=87.6977;EPPR=137.642;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.871795;PAIREDR=0.806452;PAO=0;PQA=0;PQR=0;PRO=0;QA=1555;QR=2482;RO=62;RPL=0;RPP=87.6977;RPPR=137.642;RPR=39;RUN=1;SAF=39;SAP=87.6977;SAR=0;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:14,17:14:544:17:679:-52.1101,0,-39.9648 0/0:27:25,2:25:1009:2:82:0,-0.348132,-83.3225 0/1:12:5,7:5:205:7:281:-22.0498,0,-15.2226 0/1:31:18,13:18:724:13:513:-37.1811,0,-56.154 dDocent_Contig_9716 201 . C G 53.5547 . AB=0.3;ABP=6.48466;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=35;DPB=35;DPRA=0.8;EPP=9.52472;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=106;QR=1160;RO=32;RPL=3;RPP=9.52472;RPPR=72.4974;RPR=0;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=72.4974;SRR=32;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:7,3:7:257:3:106:-6.87834,0,-20.4737 0/0:17:17,0:17:608:0:0:0,-5.11751,-55.0498 ./.:.:.:.:.:.:.:. 0/0:8:8,0:8:295:0:0:0,-2.40824,-26.9033 dDocent_Contig_9717 41 . G C 972.799 . AB=0.166667;ABP=60.9162;AC=1;AF=0.125;AN=8;AO=10;CIGAR=10M1X;DP=88;DPB=85.1818;DPRA=0;EPP=24.725;EPPR=81.1833;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=351;QR=1399;RO=36;RPL=0;RPP=24.725;RPPR=81.1833;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:30:15,6,0,9:15:589:6,0,9:238,0,310:-20.6183,-5.52159,-52.1885,-25.1338,-53.9947,-73.5905,0,-28.8477,-48.4402,-45.7309 0|0:30:10,18,0,1:10:376:18,0,1:691,0,41:-53.7001,0,-25.378,-56.7104,-30.7965,-87.5117,-53.3249,-27.4095,-84.1266,-83.8256 0|0:16:8,4,4,0:8:317:4,4,0:160,152,0:-10.7814,0,-24.8993,-0.734772,-13.644,-25.6209,-13.1897,-26.1034,-26.825,-39.2855 0|0:12:3,7,2,0:3:117:7,2,0:251,74,0:-19.5584,0,-7.52224,-14.4067,-3.58516,-23.4315,-20.4615,-9.62945,-24.0336,-30.0862 dDocent_Contig_9718 22 . A G 67.5552 . AB=0.3;ABP=6.48466;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=107;DPB=107;DPRA=0.813559;EPP=11.6962;EPPR=226.672;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=145;QR=4103;RO=103;RPL=0;RPP=11.6962;RPPR=226.672;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=103;SRP=226.672;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:50:50,0:50:1992:0:0:0,-15.0515,-179.47 0/0:38:37,1:37:1491:1:22:0,-9.23921,-132.236 0/0:9:9,0:9:337:0:0:0,-2.70927,-30.6741 0/1:10:7,3:7:283:3:123:-8.45449,0,-22.8327 dDocent_Contig_9720 1 . N A 138.439 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=6;CIGAR=1X;DP=6;DPB=6;DPRA=0;EPP=16.0391;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=23.6667;MQMR=0;NS=3;NUMALT=1;ODDS=1.69407e-21;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=204;QR=0;RO=0;RPL=0;RPP=16.0391;RPPR=0;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:105:-6.35304,-0.90309,0 1/1:1:0,1:0:0:1:35:-2.45873,-0.30103,0 1/1:2:0,2:0:0:2:64:-4.4287,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_9721 22 . C A 64.4556 . AB=0.147059;ABP=39.7976;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=129;DPB=129;DPRA=1.07368;EPP=13.8677;EPPR=272.273;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=0.991935;PAO=0;PQA=0;PQR=0;PRO=0;QA=200;QR=4980;RO=124;RPL=0;RPP=13.8677;RPPR=272.273;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=124;SRP=272.273;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:66:66,0:66:2659:0:0:0,-19.868,-239.424 0/1:34:29,5:29:1159:5:200:-8.14452,0,-94.3527 0/0:22:22,0:22:879:0:0:0,-6.62266,-79.4167 0/0:7:7,0:7:283:0:0:0,-2.10721,-25.8434 dDocent_Contig_9722 111 . C T 49.2224 . AB=0.333333;ABP=5.18177;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=71;DPB=71;DPRA=0.430108;EPP=13.8677;EPPR=146.327;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=56.7273;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.969697;PAO=0;PQA=0;PQR=0;PRO=0;QA=157;QR=2242;RO=66;RPL=0;RPP=13.8677;RPPR=146.327;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=146.327;SRR=66;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:31:31,0:31:1049:0:0:0,-9.33193,-94.7151 0/0:15:14,1:14:483:1:35:0,-1.01682,-32.6821 0/0:16:15,1:15:504:1:22:0,-2.61655,-43.4797 0/1:9:6,3:6:206:3:100:-6.6211,0,-13.8752 dDocent_Contig_9723 90 . C T 101.645 . AB=0.454545;ABP=3.20771;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=114;DPB=114;DPRA=0.320388;EPP=13.8677;EPPR=239.701;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=165;QR=3705;RO=109;RPL=5;RPP=13.8677;RPPR=239.701;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=109;SRP=239.701;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:38:38,0:38:1312:0:0:0,-11.4391,-118.382 0/0:48:48,0:48:1604:0:0:0,-14.4494,-144.645 0/0:17:17,0:17:581:0:0:0,-5.11751,-52.6131 0/1:11:6,5:6:208:5:165:-11.8635,0,-15.7483 dDocent_Contig_9724 35 . A T 65.2737 . AB=0.166667;ABP=26.1727;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=65;DPB=65;DPRA=1.7561;EPP=11.6962;EPPR=135.47;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.918033;PAO=0;PQA=0;PQR=0;PRO=0;QA=164;QR=2447;RO=61;RPL=0;RPP=11.6962;RPPR=135.47;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=61;SRP=135.47;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:20,4:20:805:4:164:-7.92518,0,-65.5422 0/0:3:3,0:3:123:0:0:0,-0.90309,-11.4648 0/0:20:20,0:20:802:0:0:0,-6.0206,-72.4975 0/0:18:18,0:18:717:0:0:0,-5.41854,-64.8552 dDocent_Contig_9726 13 . T A 815.776 . AB=0.394737;ABP=10.3247;AC=3;AF=0.375;AN=8;AO=30;CIGAR=1X;DP=127;DPB=127;DPRA=0.496732;EPP=68.1545;EPPR=213.643;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1195;QR=3884;RO=97;RPL=0;RPP=68.1545;RPPR=213.643;RPR=30;RUN=1;SAF=30;SAP=68.1545;SAR=0;SRF=97;SRP=213.643;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:39:18,21:18:719:21:839:-64.0842,0,-53.2899 0/0:51:51,0:51:2046:0:0:0,-15.3525,-184.322 0/1:26:18,8:18:724:8:315:-20.8848,0,-57.656 0/1:11:10,1:10:395:1:41:-0.783237,0,-32.5935 dDocent_Contig_9727 16 . C G 3514.9 . AB=0.316708;ABP=120.026;AC=4;AF=0.5;AN=8;AO=127;CIGAR=1X3M;DP=401;DPB=401;DPRA=0;EPP=278.787;EPPR=469.877;GTI=0;LEN=1;MEANALT=2.75;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=5.55112e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5056;QR=8347;RO=215;RPL=0;RPP=278.787;RPPR=469.877;RPR=127;RUN=1;SAF=127;SAP=278.787;SAR=0;SRF=215;SRP=469.877;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:133:80,21,31:80:3126:21,31:818,1236:-77.703,-34.5581,-285.221,0,-189.76,-247.659 0|1:146:56,16,73:56:2151:16,73:595,2888:-220.812,-188.984,-360.72,0,-127.878,-154.59 0|1:85:61,13,10:61:2370:13,10:497,406:-22.4105,0,-190.817,-7.276,-161.243,-199.012 0|1:37:18,6,13:18:700:6,13:232,526:-37.9624,-24.3312,-80.0393,0,-38.4702,-53.6116 dDocent_Contig_9728 186 . C T 493.365 . AB=0.375;ABP=9.52472;AC=1;AF=0.125;AN=8;AO=19;CIGAR=1X;DP=118;DPB=118;DPRA=1.14545;EPP=44.2683;EPPR=217.986;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=765;QR=3831;RO=99;RPL=19;RPP=44.2683;RPPR=217.986;RPR=0;RUN=1;SAF=0;SAP=44.2683;SAR=19;SRF=0;SRP=217.986;SRR=99;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:51:51,0:51:2016:0:0:0,-15.3525,-181.636 0/1:48:30,18:30:1129:18:724:-51.035,0,-87.4211 0/0:15:14,1:14:534:1:41:0,-0.420883,-44.2888 0/0:4:4,0:4:152:0:0:0,-1.20412,-14.0456 dDocent_Contig_9730 19 . C T 45.7958 . AB=0.1875;ABP=16.582;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=128;DPB=128;DPRA=0.428571;EPP=9.52472;EPPR=274.444;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=119;QR=5016;RO=125;RPL=0;RPP=9.52472;RPPR=274.444;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=125;SRP=274.444;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:68:68,0:68:2726:0:0:0,-20.47,-245.445 0/1:16:13,3:13:533:3:119:-6.27853,0,-43.4994 0/0:34:34,0:34:1349:0:0:0,-10.235,-121.664 0/0:10:10,0:10:408:0:0:0,-3.0103,-37.0806 dDocent_Contig_9731 56 . G A 123.108 . AB=0.357143;ABP=5.49198;AC=1;AF=0.125;AN=8;AO=5;CIGAR=2X;DP=37;DPB=37;DPRA=1.82609;EPP=13.8677;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=195;QR=1277;RO=32;RPL=5;RPP=13.8677;RPPR=72.4974;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:14:9,5:9:361:5:195:-13.7087,0,-28.64 0|0:10:10,0:10:393:0:0:0,-3.0103,-35.7213 0|0:9:9,0:9:363:0:0:0,-2.70927,-33.0338 0|0:4:4,0:4:160:0:0:0,-1.20412,-14.7838 dDocent_Contig_9733 114 . A G 815.632 . AB=0.493151;ABP=3.04005;AC=4;AF=0.5;AN=8;AO=36;CIGAR=1X;DP=73;DPB=73;DPRA=0;EPP=81.1833;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1218;QR=1106;RO=37;RPL=0;RPP=81.1833;RPPR=83.3548;RPR=36;RUN=1;SAF=0;SAP=81.1833;SAR=36;SRF=0;SRP=83.3548;SRR=37;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:9,14:9:297:14:465:-35.2444,0,-20.1284 0/1:18:10,8:10:284:8:274:-19.5753,0,-20.4217 0/1:17:12,5:12:353:5:166:-10.1498,0,-26.9413 0/1:15:6,9:6:172:9:313:-23.9915,0,-11.2481 dDocent_Contig_9734 114 . T C 2043.89 . AB=0.64;ABP=24.2907;AC=4;AF=0.5;AN=8;AO=80;CIGAR=1X;DP=125;DPB=125;DPRA=0;EPP=176.728;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2757;QR=1510;RO=45;RPL=0;RPP=176.728;RPPR=100.727;RPR=80;RUN=1;SAF=0;SAP=176.728;SAR=80;SRF=0;SRP=100.727;SRR=45;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:35:15,20:15:503:20:682:-51.1634,0,-35.0527 0/1:28:6,22:6:206:22:762:-60.4717,0,-10.4477 0/1:36:14,22:14:454:22:768:-58.6052,0,-30.3325 0/1:26:10,16:10:347:16:545:-41.5469,0,-23.7385 dDocent_Contig_9735 130 . A G 60.6419 . AB=0.12987;ABP=94.6352;AC=2;AF=0.25;AN=8;AO=11;CIGAR=1X;DP=102;DPB=102;DPRA=8.16667;EPP=26.8965;EPPR=200.614;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=391;QR=3178;RO=91;RPL=0;RPP=26.8965;RPPR=200.614;RPR=11;RUN=1;SAF=0;SAP=26.8965;SAR=11;SRF=0;SRP=200.614;SRR=91;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:57:50,7:50:1751:7:252:-5.87025,0,-140.715 0/0:21:20,1:20:704:1:36:0,-2.72335,-60.0862 0/1:20:17,3:17:583:3:103:-3.589,0,-46.7723 0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9448 dDocent_Contig_9736 20 . T C 1322.38 . AB=0.632353;ABP=13.3567;AC=2;AF=0.333333;AN=6;AO=43;CIGAR=1X;DP=83;DPB=83;DPRA=2.26667;EPP=96.3836;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1729;QR=1619;RO=40;RPL=0;RPP=96.3836;RPPR=89.8692;RPR=43;RUN=1;SAF=43;SAP=96.3836;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 0/1:42:5,37:5:201:37:1484:-121.158,0,-5.82726 0/1:26:20,6:20:811:6:245:-14.6027,0,-65.479 0/0:15:15,0:15:607:0:0:0,-4.51545,-54.9672 dDocent_Contig_9737 75 . C A 83.9539 . AB=0.363636;ABP=4.78696;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=48;DPB=48;DPRA=0.891892;EPP=11.6962;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=8.67362e-19;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=145;QR=1774;RO=44;RPL=4;RPP=11.6962;RPPR=98.5551;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:27:27,0:27:1086:0:0:0,-8.12781,-98.027 0/0:5:5,0:5:203:0:0:0,-1.50515,-18.6531 0/1:11:7,4:7:283:4:145:-10.0943,0,-22.5323 0/0:5:5,0:5:202:0:0:0,-1.50515,-18.5619 dDocent_Contig_9738 107 . N A 689.612 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=22;CIGAR=1X;DP=22;DPB=22;DPRA=0;EPP=50.7827;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=750;QR=0;RO=0;RPL=0;RPP=50.7827;RPPR=0;RPR=22;RUN=1;SAF=0;SAP=50.7827;SAR=22;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:14:0,14:0:0:14:484:-43.8882,-4.21442,0 1/1:4:0,4:0:0:4:140:-12.9449,-1.20412,0 1/1:4:0,4:0:0:4:126:-11.6508,-1.20412,0 ./.:.:.:.:.:.:.:. dDocent_Contig_9739 150 . N G 189.962 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=5;CIGAR=1X;DP=5;DPB=5;DPRA=0;EPP=13.8677;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=199;QR=0;RO=0;RPL=5;RPP=13.8677;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:1:0,1:0:0:1:41:-4.09457,-0.30103,0 1/1:4:0,4:0:0:4:158:-14.5994,-1.20412,0 ./.:.:.:.:.:.:.:. dDocent_Contig_9740 110 . A C 45.3107 . AB=0.173913;ABP=24.253;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=70;DPB=70;DPRA=1.46809;EPP=11.6962;EPPR=144.156;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=139;QR=2254;RO=65;RPL=0;RPP=11.6962;RPPR=144.156;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=144.156;SRR=65;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:19,4:19:659:4:139:-5.929,0,-52.711 0/0:21:20,0:20:688:0:0:0,-6.0206,-61.9483 0/0:12:12,0:12:419:0:0:0,-3.61236,-38.0445 0/0:14:14,0:14:488:0:0:0,-4.21442,-44.2517 dDocent_Contig_9741 108 . A T 1140.65 . AB=0.445378;ABP=6.09416;AC=4;AF=0.5;AN=8;AO=53;CIGAR=1X;DP=119;DPB=119;DPRA=0;EPP=118.098;EPPR=146.327;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1727;QR=2074;RO=66;RPL=0;RPP=118.098;RPPR=146.327;RPR=53;RUN=1;SAF=0;SAP=118.098;SAR=53;SRF=0;SRP=146.327;SRR=66;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:42:18,24:18:565:24:786:-58.3999,0,-38.507 0/1:50:32,18:32:1002:18:574:-36.9118,0,-75.4189 0/1:22:12,10:12:377:10:338:-24.1253,0,-27.6135 0/1:5:4,1:4:130:1:29:-1.39451,0,-10.5163 dDocent_Contig_9742 209 . N G 516.691 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=14;CIGAR=1X;DP=14;DPB=14;DPRA=0;EPP=33.4109;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=1.69407e-21;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=556;QR=0;RO=0;RPL=14;RPP=33.4109;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=33.4109;SAR=14;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:10:0,10:0:0:10:393:-35.7258,-3.0103,0 ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:81:-7.68573,-0.60206,0 1/1:2:0,2:0:0:2:82:-7.77968,-0.60206,0 dDocent_Contig_9743 32 . G T 78.7572 . AB=0.235294;ABP=13.3567;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=50;DPB=50;DPRA=1.54545;EPP=11.6962;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=159;QR=1837;RO=46;RPL=0;RPP=11.6962;RPPR=102.898;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:22:22,0:22:879:0:0:0,-6.62266,-79.4213 0/1:17:13,4:13:519:4:159:-9.57461,0,-41.9399 0/0:4:4,0:4:162:0:0:0,-1.20412,-14.967 0/0:7:7,0:7:277:0:0:0,-2.10721,-25.299 dDocent_Contig_9744 121 . T G 165.88 . AB=0.32;ABP=10.0459;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=63;DPB=63;DPRA=1.97368;EPP=20.3821;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=283;QR=1894;RO=55;RPL=0;RPP=20.3821;RPPR=122.441;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=122.441;SRR=55;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:12:12,0:12:430:0:0:0,-3.61236,-39.0401 0/1:25:17,8:17:584:8:283:-18.287,0,-45.355 0/0:6:6,0:6:182:0:0:0,-1.80618,-16.6769 0/0:20:20,0:20:698:0:0:0,-6.0206,-63.1425 dDocent_Contig_9745 12 . T A 1758.06 . AB=0.630435;ABP=16.6056;AC=3;AF=0.375;AN=8;AO=59;CIGAR=1X;DP=107;DPB=107;DPRA=0;EPP=131.127;EPPR=98.736;GTI=0;LEN=1;MEANALT=1;MQM=57.8644;MQMR=59.4167;NS=4;NUMALT=1;ODDS=0;PAIRED=0.830508;PAIREDR=0.833333;PAO=0;PQA=0;PQR=0;PRO=0;QA=2360;QR=1876;RO=48;RPL=0;RPP=131.127;RPPR=107.241;RPR=59;RUN=1;SAF=59;SAP=131.127;SAR=0;SRF=47;SRP=98.736;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:7,23:7:273:23:930:-74.7998,0,-15.9059 0/1:32:13,19:13:501:19:749:-57.5397,0,-35.7991 0/1:30:14,16:14:547:16:643:-48.8647,0,-40.5427 0/0:15:14,1:14:555:1:38:0,-0.794448,-46.3854 dDocent_Contig_9746 32 . A T 52.9912 . AB=0.176471;ABP=18.4661;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X1M1X2M1X2M1X;DP=67;DPB=67;DPRA=0.68;EPP=9.52472;EPPR=133.299;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=114;QR=2382;RO=60;RPL=0;RPP=9.52472;RPPR=133.299;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:17:14,3,0:14:553:3,0:114,0:-5.5143,0,-44.9953,-9.72872,-45.8984,-55.2447 0|0:25:24,0,1:24:953:0,1:0,40:0,-7.22472,-85.6778,-3.53007,-82.3826,-82.0816 0|0:15:13,0,2:13:518:0,2:0,81:-3.17028,-7.08367,-49.7351,0,-43.0551,-42.4531 0|0:10:9,0,1:9:358:0,1:0,37:-0.687529,-3.3968,-32.8987,0,-29.8745,-29.5735 dDocent_Contig_9747 55 . C A 46.3037 . AB=0.142857;ABP=41.7866;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=59;DPB=59;DPRA=0;EPP=16.0391;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=240;QR=2135;RO=53;RPL=6;RPP=16.0391;RPPR=118.098;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:20,3:20:795:3:119:-4.17132,0,-64.9436 0/0:24:23,1:23:932:1:41:0,-3.13015,-80.0876 0/1:12:10,2:10:408:2:80:-3.97943,0,-33.4682 ./.:.:.:.:.:.:.:. dDocent_Contig_9748 61 . T C 70.4436 . AB=0.235294;ABP=13.3567;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=39;DPB=39;DPRA=2.31818;EPP=11.6962;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=150;QR=1355;RO=35;RPL=4;RPP=11.6962;RPPR=79.0118;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:11,0:11:426:0:0:0,-3.31133,-38.6938 0/1:17:13,4:13:505:4:150:-8.74319,0,-40.6805 0/0:3:3,0:3:117:0:0:0,-0.90309,-10.9102 0/0:8:8,0:8:307:0:0:0,-2.40824,-27.9875 dDocent_Contig_9750 58 . C G 5253.37 . AB=0.685484;ABP=77.1206;AC=4;AF=0.5;AN=8;AO=170;CIGAR=1X;DP=248;DPB=248;DPRA=0;EPP=372.161;EPPR=172.385;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6739;QR=3102;RO=78;RPL=170;RPP=372.161;RPPR=172.385;RPR=0;RUN=1;SAF=170;SAP=372.161;SAR=0;SRF=78;SRP=172.385;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:89:34,55:34:1334:55:2189:-170.384,0,-93.5261 0/1:87:34,53:34:1368:53:2144:-166.94,0,-97.1852 0/1:53:7,46:7:281:46:1771:-143.646,0,-9.70796 0/1:19:3,16:3:119:16:635:-51.765,0,-5.37561 dDocent_Contig_9751 113 . C A 1955.7 . AB=0.0714286;ABP=70.0157;AC=0;AF=0;AN=8;AO=3;CIGAR=1X2M1X;DP=150;DPB=150;DPRA=0;EPP=9.52472;EPPR=124.613;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=95;QR=1884;RO=56;RPL=0;RPP=9.52472;RPPR=124.613;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=124.613;SRR=56;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:71:23,0,48,0:23:771:0,48,0:0,1562,0:-119.487,-126.411,-188.858,0,-62.7789,-48.3295,-126.411,-188.858,-62.7789,-188.858 0|0:42:15,3,17,7:15:509:3,17,7:95,581,240:-42.6431,-39.5161,-79.8912,0,-33.6394,-36.1643,-27.672,-61.3086,-21.7945,-66.8446 0|0:12:3,0,9,0:3:102:0,9,0:0,263,0:-20.3429,-21.246,-29.5317,0,-8.61371,-5.90444,-21.246,-29.5317,-8.61371,-29.5317 0|0:25:15,0,10,0:15:502:0,10,0:0,308,0:-20.4949,-25.0104,-65.6763,0,-40.9845,-37.9742,-25.0104,-65.6763,-40.9845,-65.6763 dDocent_Contig_9752 14 . C T 263.917 . AB=0.209677;ABP=48.4011;AC=2;AF=0.25;AN=8;AO=14;CIGAR=1X;DP=93;DPB=93;DPRA=2.05128;EPP=33.4109;EPPR=174.557;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=564;QR=3171;RO=79;RPL=0;RPP=33.4109;RPPR=174.557;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=79;SRP=174.557;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:13:13,0:13:526:0:0:0,-3.91339,-47.6857 0/1:32:25,7:25:1012:7:284:-16.3005,0,-81.7403 0/1:30:24,6:24:973:6:246:-13.4892,0,-78.836 0/0:18:17,1:17:660:1:34:0,-2.01963,-56.3245 dDocent_Contig_9753 13 . T C 47.2107 . AB=0.137931;ABP=36.0317;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=98;DPB=98;DPRA=1.26087;EPP=11.6962;EPPR=207.129;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.691489;PAO=0;PQA=0;PQR=0;PRO=0;QA=164;QR=3756;RO=94;RPL=0;RPP=11.6962;RPPR=207.129;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=94;SRP=207.129;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:30:30,0:30:1170:0:0:0,-9.0309,-105.57 0/1:29:25,4:25:1010:4:164:-6.42003,0,-82.464 0/0:26:26,0:26:1046:0:0:0,-7.82678,-94.4315 0/0:13:13,0:13:530:0:0:0,-3.91339,-48.0466 dDocent_Contig_9754 122 . G A 835.229 . AB=0.576271;ABP=5.99147;AC=2;AF=0.25;AN=8;AO=34;CIGAR=1X;DP=70;DPB=70;DPRA=5.36364;EPP=76.8404;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.833333;PAO=0;PQA=0;PQR=0;PRO=0;QA=1156;QR=1200;RO=36;RPL=0;RPP=76.8404;RPPR=81.1833;RPR=34;RUN=1;SAF=0;SAP=76.8404;SAR=34;SRF=0;SRP=81.1833;SRR=36;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:16,4:16:508:4:135:-6.4627,0,-40.0028 0/1:39:9,30:9:313:30:1021:-80.4581,0,-16.7668 0/0:5:5,0:5:171:0:0:0,-1.50515,-15.7265 0/0:6:6,0:6:208:0:0:0,-1.80618,-19.0596 dDocent_Contig_9755 156 . G C 312.259 . AB=0.458333;ABP=3.37221;AC=1;AF=0.125;AN=8;AO=11;CIGAR=1X;DP=56;DPB=56;DPRA=2.25;EPP=26.8965;EPPR=98.5551;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=440;QR=1759;RO=44;RPL=0;RPP=26.8965;RPPR=98.5551;RPR=11;RUN=1;SAF=0;SAP=26.8965;SAR=11;SRF=0;SRP=98.5551;SRR=44;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:12,11:12:475:11:440:-32.6237,0,-35.7672 0/0:15:15,0:15:592:0:0:0,-4.51545,-53.6129 0/0:14:14,0:14:569:0:0:0,-4.21442,-51.5525 0/0:3:3,0:3:123:0:0:0,-0.90309,-11.4648 dDocent_Contig_9756 11 . C A 762.255 . AB=0.213873;ABP=126.031;AC=3;AF=0.375;AN=8;AO=37;CIGAR=1X;DP=182;DPB=182;DPRA=6.40741;EPP=83.3548;EPPR=317.874;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1474;QR=5792;RO=145;RPL=0;RPP=83.3548;RPPR=317.874;RPR=37;RUN=1;SAF=37;SAP=83.3548;SAR=0;SRF=145;SRP=317.874;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:76:58,18:58:2303:18:717:-41.9763,0,-184.554 0/1:74:58,16:58:2316:16:638:-35.4751,0,-186.324 0/1:23:20,3:20:808:3:119:-4.17132,0,-66.1123 0/0:9:9,0:9:365:0:0:0,-2.70927,-33.2149 dDocent_Contig_9757 104 . N G 37.1642 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=3X10I3X1M1X;DP=3;DPB=6.75;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=13.3333;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=95;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:3:0,3:0:0:3:95:-3.71579,-0.90309,0 .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. dDocent_Contig_9758 50 . C T 33.1881 . AB=0.133333;ABP=38.0434;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=129;DPB=129;DPRA=1.80435;EPP=18.2106;EPPR=267.93;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=263;QR=4805;RO=122;RPL=7;RPP=18.2106;RPPR=267.93;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=122;SRP=267.93;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:53:50,3:50:1985:3:111:0,-5.60316,-168.494 0/0:32:32,0:32:1254:0:0:0,-9.63296,-113.13 0/1:30:26,4:26:1012:4:152:-5.01757,0,-82.3364 0/0:14:14,0:14:554:0:0:0,-4.21442,-50.2031 dDocent_Contig_9759 17 . G A 3541.9 . AB=0.823529;ABP=126.656;AC=4;AF=0.5;AN=8;AO=112;CIGAR=1X;DP=136;DPB=136;DPRA=0;EPP=246.215;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4460;QR=958;RO=24;RPL=0;RPP=246.215;RPPR=55.1256;RPR=112;RUN=1;SAF=112;SAP=246.215;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:72:10,62:10:393:62:2469:-200.681,0,-14.0489 0/1:33:5,28:5:203:28:1123:-91.4209,0,-8.71906 0/1:22:7,15:7:281:15:600:-47.7158,0,-19.039 0/1:9:2,7:2:81:7:268:-21.7706,0,-4.97646 dDocent_Contig_9760 140 . G A 136.988 . AB=0.178571;ABP=53.2644;AC=2;AF=0.25;AN=8;AO=11;CIGAR=1X;DP=90;DPB=90;DPRA=3.95238;EPP=26.8965;EPPR=174.557;GTI=0;LEN=1;MEANALT=1;MQM=59.9091;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.909091;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=403;QR=2855;RO=79;RPL=0;RPP=26.8965;RPPR=174.557;RPR=11;RUN=1;SAF=0;SAP=26.8965;SAR=11;SRF=0;SRP=174.557;SRR=79;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:24,7:24:897:7:262:-14.606,0,-71.7159 0/1:25:22,3:22:784:3:107:-2.45418,0,-63.3424 0/0:27:26,1:26:955:1:34:0,-4.72918,-82.8604 0/0:7:7,0:7:219:0:0:0,-2.10721,-20.0115 dDocent_Contig_9761 11 . A G 193.207 . AB=0.152174;ABP=99.688;AC=2;AF=0.25;AN=8;AO=18;CIGAR=1X;DP=239;DPB=239;DPRA=1.16981;EPP=42.0968;EPPR=482.906;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=0.986425;PAO=0;PQA=0;PQR=0;PRO=0;QA=716;QR=8813;RO=221;RPL=0;RPP=42.0968;RPPR=482.906;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=221;SRP=482.906;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:94:90,4:90:3605:4:164:0,-13.1469,-309.324 0/0:53:53,0:53:2116:0:0:0,-15.9546,-190.616 0/1:53:44,9:44:1757:9:355:-16.3539,0,-142.389 0/1:39:34,5:34:1335:5:197:-6.36474,0,-108.67 dDocent_Contig_9762 1 . N G 75.9287 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=80;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:80:-7.59179,-0.60206,0 dDocent_Contig_9763 15 . C A 37.453 . AB=0.142857;ABP=26.2761;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=76;DPB=76;DPRA=1.14545;EPP=9.52472;EPPR=161.528;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=123;QR=2945;RO=73;RPL=0;RPP=9.52472;RPPR=161.528;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=73;SRP=161.528;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:18,3:18:720:3:123:-5.14316,0,-58.8019 0/0:21:21,0:21:855:0:0:0,-6.32163,-77.2597 0/0:24:24,0:24:980:0:0:0,-7.22472,-88.4943 0/0:10:10,0:10:390:0:0:0,-3.0103,-35.451 dDocent_Contig_9764 66 . T A 471.927 . AB=0.201681;ABP=94.9968;AC=3;AF=0.375;AN=8;AO=24;CIGAR=1X;DP=209;DPB=209;DPRA=0.440741;EPP=55.1256;EPPR=404.733;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=957;QR=7423;RO=185;RPL=24;RPP=55.1256;RPPR=404.733;RPR=0;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=185;SRP=404.733;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:47:43,4:43:1736:4:162:-0.818546,0,-142.308 0/0:90:90,0:90:3594:0:0:0,-27.0927,-323.491 0/1:47:38,9:38:1524:9:349:-17.6131,0,-123.251 0/1:25:14,11:14:569:11:446:-32.9704,0,-44.0263 dDocent_Contig_9765 1 . N G 71.163 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=58;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=75;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:75:-7.11521,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_9766 12 . G A 2213.77 . AB=0.503311;ABP=3.02468;AC=4;AF=0.5;AN=8;AO=76;CIGAR=1X;DP=151;DPB=151;DPRA=0;EPP=168.042;EPPR=165.871;GTI=0;LEN=1;MEANALT=1;MQM=59.9079;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=0.881579;PAIREDR=0.946667;PAO=0;PQA=0;PQR=0;PRO=0;QA=3033;QR=2999;RO=75;RPL=0;RPP=168.042;RPPR=165.871;RPR=76;RUN=1;SAF=76;SAP=168.042;SAR=0;SRF=75;SRP=165.871;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:53:18,35:18:727:35:1406:-110.837,0,-49.8005 0/1:45:32,13:32:1262:13:511:-32.786,0,-100.292 0/1:31:13,18:13:526:18:709:-54.7839,0,-38.354 0/1:22:12,10:12:484:10:407:-30.3679,0,-37.2876 dDocent_Contig_9768 83 . C T 32.2504 . AB=0.16129;ABP=33.9012;AC=2;AF=0.25;AN=8;AO=5;CIGAR=1X;DP=53;DPB=53;DPRA=1.40909;EPP=13.8677;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=169;QR=1838;RO=48;RPL=5;RPP=13.8677;RPPR=107.241;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:22,4:22:841:4:130:-4.18868,0,-68.186 0/1:5:4,1:4:156:1:39:-2.39141,0,-12.9121 0/0:9:9,0:9:350:0:0:0,-2.70927,-31.8614 0/0:13:13,0:13:491:0:0:0,-3.91339,-44.534 dDocent_Contig_9769 36 . G A 75.5923 . AB=0.307692;ABP=7.18621;AC=2;AF=0.25;AN=8;AO=4;CIGAR=1X;DP=46;DPB=46;DPRA=0.393939;EPP=11.6962;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=157;QR=1659;RO=42;RPL=0;RPP=11.6962;RPPR=94.2121;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:14:14,0:14:554:0:0:0,-4.21442,-50.2014 0/1:6:3,3:3:119:3:118:-9.19602,0,-9.28883 0/0:19:19,0:19:742:0:0:0,-5.71957,-67.0913 0/1:7:6,1:6:244:1:39:-1.78935,0,-20.2316 dDocent_Contig_9770 13 . C T 203.133 . AB=0.186441;ABP=53.3958;AC=1;AF=0.125;AN=8;AO=14;CIGAR=1X;DP=174;DPB=174;DPRA=1.9;EPP=33.4109;EPPR=350.446;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.975;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.95;PAO=0;PQA=0;PQR=0;PRO=0;QA=558;QR=6444;RO=160;RPL=0;RPP=33.4109;RPPR=350.446;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=160;SRP=350.446;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:46:46,0:46:1852:0:0:0,-13.8474,-166.876 0/1:59:48,11:48:1926:11:438:-22.0123,0,-155.781 0/0:55:52,3:52:2096:3:120:0,-5.36934,-177.629 0/0:14:14,0:14:570:0:0:0,-4.21442,-51.642 dDocent_Contig_9771 120 . C T 139.97 . AB=0.242424;ABP=22.0271;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=90;DPB=90;DPRA=1.73684;EPP=20.3821;EPPR=181.071;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=281;QR=2805;RO=82;RPL=0;RPP=20.3821;RPPR=181.071;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=181.071;SRR=82;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:18:18,0:18:618:0:0:0,-5.41854,-55.9427 0/1:33:25,8:25:853:8:281:-15.6959,0,-67.1496 0/0:18:18,0:18:612:0:0:0,-5.41854,-55.4009 0/0:21:21,0:21:722:0:0:0,-6.32163,-65.3001 dDocent_Contig_9773 41 . C A 49.3066 . AB=0.137931;ABP=36.0317;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=75;DPB=75;DPRA=5.25;EPP=16.0391;EPPR=152.842;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=245;QR=2745;RO=69;RPL=0;RPP=16.0391;RPPR=152.842;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=69;SRP=152.842;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:25,4:25:982:4:163:-6.32856,0,-79.9467 0/0:34:32,2:32:1277:2:82:0,-2.45534,-107.416 0/0:6:6,0:6:242:0:0:0,-1.80618,-22.1575 0/0:6:6,0:6:244:0:0:0,-1.80618,-22.3388 dDocent_Contig_9774 17 . C T 61.164 . AB=0.12963;ABP=67.3502;AC=2;AF=0.25;AN=8;AO=14;CIGAR=1M1D2M1X;DP=170;DPB=167.2;DPRA=0;EPP=33.4109;EPPR=337.417;GTI=0;LEN=1;MEANALT=1.5;MQM=58.7143;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=0;PAIREDR=0.766234;PAO=0;PQA=0;PQR=0;PRO=0;QA=558;QR=6150;RO=154;RPL=0;RPP=33.4109;RPPR=337.417;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=154;SRP=337.417;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:64:60,3:60:2403:3:122:0,-8.00103,-205.054 0|0:52:48,4:48:1914:4:155:0,-1.32859,-158.144 0|1:28:23,4:23:925:4:160:-6.05706,0,-75.0193 0|1:26:23,3:23:908:3:121:-3.45342,0,-74.2013 dDocent_Contig_9775 55 . G T 106.639 . AB=0.26087;ABP=14.4341;AC=2;AF=0.25;AN=8;AO=6;CIGAR=1X;DP=61;DPB=61;DPRA=0.605263;EPP=16.0391;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=225;QR=2190;RO=55;RPL=6;RPP=16.0391;RPPR=122.441;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:12:12,0:12:463:0:0:0,-3.61236,-42.0111 0/0:26:26,0:26:1050:0:0:0,-7.82678,-94.7898 0/1:19:15,4:15:596:4:150:-8.14582,0,-48.2565 0/1:4:2,2:2:81:2:75:-5.91598,0,-6.48161 dDocent_Contig_9776 107 . N T 222.122 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=7;CIGAR=1X;DP=7;DPB=7;DPRA=0;EPP=18.2106;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=236;QR=0;RO=0;RPL=0;RPP=18.2106;RPPR=0;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1:0,1:0:0:1:34:-3.39891,-0.30103,0 1/1:6:0,6:0:0:6:202:-18.511,-1.80618,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_9777 48 . C G 1413.09 . AB=0.530973;ABP=3.95191;AC=4;AF=0.5;AN=8;AO=60;CIGAR=1M1I4M1X1M;DP=113;DPB=121.571;DPRA=0;EPP=133.299;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.8;PAIREDR=0.943396;PAO=0;PQA=0;PQR=0;PRO=0;QA=2016;QR=2096;RO=53;RPL=0;RPP=133.299;RPPR=118.098;RPR=60;RUN=1;SAF=60;SAP=133.299;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:35:11,24:11:434:24:799:-61.6818,0,-28.8764 0|1:42:25,17:25:992:17:567:-38.702,0,-76.938 0|1:21:10,11:10:400:11:383:-28.4833,0,-30.0386 0|1:15:7,8:7:270:8:267:-19.8403,0,-20.1483 dDocent_Contig_9778 26 . A T 1444.37 . AB=0.573034;ABP=7.13366;AC=4;AF=0.5;AN=8;AO=51;CIGAR=1X;DP=89;DPB=89;DPRA=0;EPP=113.755;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.941176;PAIREDR=0.842105;PAO=0;PQA=0;PQR=0;PRO=0;QA=1953;QR=1543;RO=38;RPL=0;RPP=113.755;RPPR=85.5263;RPR=51;RUN=1;SAF=51;SAP=113.755;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:8,17:8:325:17:664:-52.5677,0,-22.0937 0/1:26:13,13:13:524:13:487:-36.3392,0,-39.6796 0/1:10:9,1:9:368:1:35:-0.488329,0,-30.4751 0/1:28:8,20:8:326:20:767:-60.9245,0,-21.281 dDocent_Contig_9779 96 . G A 154.235 . AB=0.185714;ABP=63.067;AC=3;AF=0.375;AN=8;AO=13;CIGAR=1X;DP=101;DPB=101;DPRA=0.752688;EPP=31.2394;EPPR=194.1;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=454;QR=2966;RO=88;RPL=13;RPP=31.2394;RPPR=194.1;RPR=0;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=88;SRP=194.1;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:31:31,0:31:1060:0:0:0,-9.33193,-95.7072 0/1:34:27,7:27:920:7:244:-12.065,0,-72.8766 0/1:19:16,3:16:509:3:105:-4.07659,0,-40.3921 0/1:17:14,3:14:477:3:105:-4.67865,0,-38.1384 dDocent_Contig_9780 29 . T C 827.986 . AB=0.294118;ABP=46.8229;AC=4;AF=0.5;AN=8;AO=35;CIGAR=1X;DP=119;DPB=119;DPRA=0;EPP=79.0118;EPPR=185.414;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.964286;PAO=0;PQA=0;PQR=0;PRO=0;QA=1384;QR=3382;RO=84;RPL=0;RPP=79.0118;RPPR=185.414;RPR=35;RUN=1;SAF=35;SAP=79.0118;SAR=0;SRF=84;SRP=185.414;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:40:35,5:35:1386:5:199:-6.24716,0,-112.949 0/1:35:15,20:15:612:20:782:-60.1624,0,-44.8809 0/1:27:22,5:22:895:5:199:-10.1605,0,-72.7279 0/1:17:12,5:12:489:5:204:-13.6265,0,-39.2436 dDocent_Contig_9781 63 . G T 55.2748 . AB=0.266667;ABP=10.1038;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=88;DPB=88;DPRA=0.616438;EPP=11.6962;EPPR=185.414;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=127;QR=2926;RO=84;RPL=4;RPP=11.6962;RPPR=185.414;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=84;SRP=185.414;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:39:39,0:39:1349:0:0:0,-11.7402,-121.704 0/0:21:21,0:21:726:0:0:0,-6.32163,-65.6581 0/1:15:11,4:11:387:4:127:-7.22644,0,-30.6502 0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0953 dDocent_Contig_9783 98 . N T 5216.04 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=166;CIGAR=2X;DP=166;DPB=166;DPRA=0;EPP=363.475;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=5775;QR=0;RO=0;RPL=166;RPP=363.475;RPPR=0;RPR=0;RUN=1;SAF=166;SAP=363.475;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:55:0,55:0:0:55:1933:-174.248,-16.5567,0 1|1:50:0,50:0:0:50:1747:-157.514,-15.0515,0 1|1:47:0,47:0:0:47:1653:-149.059,-14.1484,0 1|1:14:0,14:0:0:14:442:-40.0828,-4.21442,0 dDocent_Contig_9784 151 . A T 43.3074 . AB=0.114754;ABP=81.6461;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=104;DPB=104;DPRA=6.42857;EPP=20.3821;EPPR=211.472;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=297;QR=3585;RO=96;RPL=8;RPP=20.3821;RPPR=211.472;RPR=0;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=211.472;SRR=96;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:29:28,1:28:1049:1:30:0,-5.7303,-91.7075 0/1:61:54,7:54:2001:7:267:-6.02966,0,-161.962 0/0:9:9,0:9:342:0:0:0,-2.70927,-31.1355 0/0:5:5,0:5:193:0:0:0,-1.50515,-17.7414 dDocent_Contig_9785 98 . N A 231.598 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=7;CIGAR=1X;DP=7;DPB=7;DPRA=0;EPP=18.2106;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=45;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=242;QR=0;RO=0;RPL=7;RPP=18.2106;RPPR=0;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:70:-6.57138,-0.60206,0 1/1:4:0,4:0:0:4:139:-12.712,-1.20412,0 1/1:1:0,1:0:0:1:33:-3.27344,-0.30103,0 dDocent_Contig_9786 8 . T A 4847.36 . AB=0.5625;ABP=13.3248;AC=4;AF=0.5;AN=8;AO=171;CIGAR=1X;DP=304;DPB=304;DPRA=0;EPP=374.332;EPPR=291.816;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=0.969925;PAO=0;PQA=0;PQR=0;PRO=0;QA=6473;QR=5117;RO=133;RPL=0;RPP=374.332;RPPR=291.816;RPR=171;RUN=1;SAF=171;SAP=374.332;SAR=0;SRF=133;SRP=291.816;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:113:38,75:38:1471:75:2857:-223.295,0,-98.6489 0/1:56:45,11:45:1729:11:427:-21.9274,0,-139.011 0/1:69:15,54:15:580:54:2032:-162.35,0,-31.7714 0/1:66:35,31:35:1337:31:1157:-84.5615,0,-100.747 dDocent_Contig_9787 131 . C A 35.376 . AB=0.176471;ABP=18.4661;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=91;DPB=91;DPRA=0.689189;EPP=9.52472;EPPR=194.1;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=58.75;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.977273;PAO=0;PQA=0;PQR=0;PRO=0;QA=111;QR=3161;RO=88;RPL=0;RPP=9.52472;RPPR=194.1;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=194.1;SRR=88;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:33:33,0:33:1160:0:0:0,-9.93399,-101.802 0/0:36:36,0:36:1323:0:0:0,-10.8371,-119.364 0/1:17:14,3:14:495:3:111:-5.23641,0,-37.0434 0/0:5:5,0:5:183:0:0:0,-1.50515,-16.8268 dDocent_Contig_9788 22 . A G 598.578 . AB=0.338028;ABP=19.1893;AC=4;AF=0.5;AN=8;AO=24;CIGAR=1X;DP=71;DPB=71;DPRA=0;EPP=55.1256;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.829787;PAO=0;PQA=0;PQR=0;PRO=0;QA=968;QR=1719;RO=47;RPL=0;RPP=55.1256;RPPR=105.07;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:9,9:9:290:9:358:-27.1602,0,-20.9873 0/1:25:15,10:15:576:10:408:-29.5548,0,-44.6552 0/1:14:12,2:12:460:2:81:-3.47131,0,-37.5322 0/1:14:11,3:11:393:3:121:-7.06578,0,-31.4866 dDocent_Contig_9789 83 . C T 402.316 . AB=0.5;ABP=3.0103;AC=2;AF=0.25;AN=8;AO=17;CIGAR=1X;DP=104;DPB=104;DPRA=0.485714;EPP=39.9253;EPPR=191.928;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=591;QR=3077;RO=87;RPL=17;RPP=39.9253;RPPR=191.928;RPR=0;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=87;SRP=191.928;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:7,8:7:246:8:282:-21.2062,0,-17.9665 0/0:59:59,0:59:2090:0:0:0,-17.7608,-188.369 0/1:19:10,9:10:349:9:309:-22.4234,0,-26.0263 0/0:11:11,0:11:392:0:0:0,-3.31133,-35.6203 dDocent_Contig_9790 54 . A T 273.56 . AB=0.292683;ABP=18.3165;AC=2;AF=0.25;AN=8;AO=12;CIGAR=1X;DP=58;DPB=58;DPRA=2.41176;EPP=29.068;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=470;QR=1804;RO=46;RPL=12;RPP=29.068;RPPR=102.898;RPR=0;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:27,3:27:1060:3:122:-2.34159,0,-86.6575 0/0:8:8,0:8:308:0:0:0,-2.40824,-28.0794 0/1:11:2,9:2:75:9:348:-28.364,0,-3.80747 0/0:9:9,0:9:361:0:0:0,-2.70927,-32.853 dDocent_Contig_9791 11 . C T 99.4524 . AB=0.193548;ABP=28.2974;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=128;DPB=128;DPRA=0.958763;EPP=16.0391;EPPR=267.93;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.967213;PAO=0;PQA=0;PQR=0;PRO=0;QA=229;QR=4844;RO=122;RPL=0;RPP=16.0391;RPPR=267.93;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=122;SRP=267.93;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:75:75,0:75:2972:0:0:0,-22.5772,-267.573 0/1:31:25,6:25:987:6:229:-11.6439,0,-79.7951 0/0:20:20,0:20:804:0:0:0,-6.0206,-72.6779 0/0:2:2,0:2:81:0:0:0,-0.60206,-7.68573 dDocent_Contig_9792 53 . G C 49.0187 . AB=0.15625;ABP=35.8538;AC=2;AF=0.25;AN=8;AO=5;CIGAR=1X;DP=133;DPB=133;DPRA=0.316832;EPP=13.8677;EPPR=280.959;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=191;QR=4858;RO=128;RPL=5;RPP=13.8677;RPPR=280.959;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=128;SRP=280.959;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:61:61,0:61:2332:0:0:0,-18.3628,-210.073 0/0:40:40,0:40:1504:0:0:0,-12.0412,-135.62 0/1:21:18,3:18:673:3:119:-4.77338,0,-54.571 0/1:11:9,2:9:349:2:72:-3.52299,0,-28.4581 dDocent_Contig_9793 27 . C T 921.692 . AB=0.659574;ABP=13.4056;AC=2;AF=0.333333;AN=6;AO=33;CIGAR=1X;DP=80;DPB=80;DPRA=0;EPP=74.6689;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1286;QR=1870;RO=47;RPL=0;RPP=74.6689;RPPR=105.07;RPR=33;RUN=1;SAF=33;SAP=74.6689;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:33:31,2:31:1227:2:73:0,-3.00392,-103.768 0/1:15:7,8:7:284:8:315:-24.1973,0,-21.4185 0/1:32:9,23:9:359:23:898:-71.4948,0,-23.0399 ./.:.:.:.:.:.:.:. dDocent_Contig_9794 32 . A G 638.217 . AB=0.270588;ABP=41.8669;AC=5;AF=0.625;AN=8;AO=26;CIGAR=1X;DP=88;DPB=88;DPRA=0;EPP=59.4686;EPPR=137.642;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1037;QR=2464;RO=62;RPL=0;RPP=59.4686;RPPR=137.642;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:19,6:19:742:6:239:-14.3593,0,-59.5718 0/1:30:19,11:19:761:11:440:-30.9224,0,-59.7815 0/1:30:24,6:24:961:6:244:-13.3077,0,-77.7588 1/1:3:0,3:0:0:3:114:-10.6301,-0.90309,0 dDocent_Contig_9795 19 . A C 1477.81 . AB=0.554348;ABP=5.3706;AC=3;AF=0.375;AN=8;AO=51;CIGAR=1X9M1X;DP=97;DPB=97;DPRA=6.13333;EPP=113.755;EPPR=74.6689;GTI=0;LEN=1;MEANALT=3;MQM=58;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.686275;PAIREDR=0.939394;PAO=0;PQA=0;PQR=0;PRO=0;QA=1981;QR=1295;RO=33;RPL=0;RPP=113.755;RPPR=74.6689;RPR=51;RUN=1;SAF=51;SAP=113.755;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:45:11,5,24:11:430:5,24:194,925:-71.8049,-59.189,-93.0369,0,-19.4251,-28.1259 0|1:31:10,0,20:10:394:0,20:0,785:-61.5317,-64.542,-96.9563,0,-32.3997,-26.3791 0|1:16:8,1,7:8:319:1,7:40,271:-19.8427,-18.9543,-44.9308,0,-22.9751,-24.1631 0|0:5:4,0,0:4:152:0,0:0,0:0,-1.20412,-13.6524,-1.20412,-13.6524,-13.6524 dDocent_Contig_9796 145 . C T 43.6688 . AB=0.214286;ABP=12.937;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X3M3I1X;DP=42;DPB=44.2;DPRA=1.5;EPP=9.52472;EPPR=83.3548;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=108;QR=1422;RO=37;RPL=0;RPP=9.52472;RPPR=83.3548;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=83.3548;SRR=37;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:14:10,3:10:398:3:108:-5.76473,0,-31.8566 0|0:14:14,0:14:507:0:0:0,-4.21442,-45.9545 0|0:9:9,0:9:358:0:0:0,-2.70927,-32.584 0|0:5:4,0:4:159:0:0:0,-1.20412,-14.3162 dDocent_Contig_9798 19 . G A 143.421 . AB=0.190476;ABP=37.9607;AC=2;AF=0.25;AN=8;AO=8;CIGAR=1X;DP=65;DPB=65;DPRA=1.82609;EPP=20.3821;EPPR=126.784;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=322;QR=2295;RO=57;RPL=0;RPP=20.3821;RPPR=126.784;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:13:13,0:13:518:0:0:0,-3.91339,-46.965 0/1:32:25,7:25:1011:7:281:-16.0281,0,-81.649 0/1:10:9,1:9:367:1:41:-1.08427,0,-30.385 0/0:10:10,0:10:399:0:0:0,-3.0103,-36.2685 dDocent_Contig_9799 107 . N C 153.596 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=5;CIGAR=1X;DP=5;DPB=5;DPRA=0;EPP=13.8677;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=8.07091;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=167;QR=0;RO=0;RPL=0;RPP=13.8677;RPPR=0;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:5:0,5:0:0:5:167:-15.3595,-1.50515,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_9800 19 . G A 543.111 . AB=0.242424;ABP=60.0608;AC=2;AF=0.25;AN=8;AO=24;CIGAR=1X1M;DP=146;DPB=146;DPRA=2.10638;EPP=55.1256;EPPR=261.416;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=959;QR=4723;RO=119;RPL=0;RPP=55.1256;RPPR=261.416;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=119;SRP=261.416;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:27:27,0,0:27:1082:0,0:0,0:0,-8.12781,-97.6671,-8.12781,-97.6671,-97.6671 0|1:37:25,3,9:25:980:3,9:120,349:-21.1351,-18.7726,-98.4523,0,-70.6865,-77.8634 0|1:62:47,0,15:47:1862:0,15:0,610:-36.574,-50.7224,-203.961,0,-153.642,-149.127 0|0:20:20,0,0:20:799:0,0:0,0:0,-6.0206,-72.226,-6.0206,-72.226,-72.226 dDocent_Contig_9801 121 . T G 225.657 . AB=0.34375;ABP=9.79615;AC=1;AF=0.125;AN=8;AO=11;CIGAR=1X;DP=67;DPB=67;DPRA=2.74286;EPP=26.8965;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=373;QR=1853;RO=56;RPL=0;RPP=26.8965;RPPR=124.613;RPR=11;RUN=1;SAF=0;SAP=26.8965;SAR=11;SRF=0;SRP=124.613;SRR=56;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:16:16,0:16:535:0:0:0,-4.81648,-48.4673 0/1:32:21,11:21:696:11:373:-24.2646,0,-53.3142 0/0:10:10,0:10:325:0:0:0,-3.0103,-29.5653 0/0:9:9,0:9:297:0:0:0,-2.70927,-27.0514 dDocent_Contig_9803 25 . T G 3765.89 . AB=0.61244;ABP=25.9614;AC=4;AF=0.5;AN=8;AO=128;CIGAR=1X;DP=209;DPB=209;DPRA=0;EPP=280.959;EPPR=178.9;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4953;QR=3158;RO=81;RPL=0;RPP=280.959;RPPR=178.9;RPR=128;RUN=1;SAF=128;SAP=280.959;SAR=0;SRF=81;SRP=178.9;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:41:19,22:19:744:22:834:-63.0245,0,-54.9398 0/1:105:21,84:21:826:84:3251:-261.092,0,-43.0503 0/1:42:24,18:24:921:18:708:-51.4081,0,-70.56 0/1:21:17,4:17:667:4:160:-8.46217,0,-54.0429 dDocent_Contig_9804 58 . C T 36.9964 . AB=0.166667;ABP=20.3821;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=55;DPB=55;DPRA=2.05556;EPP=11.6962;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=0.25;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=157;QR=2019;RO=51;RPL=4;RPP=11.6962;RPPR=113.755;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:6:6,0:6:231:0:0:0,-1.80618,-21.1528 0/1:18:15,3:15:594:3:116:-5.39848,0,-48.3761 0/0:19:18,1:18:716:1:41:0,-1.625,-60.6693 0/0:12:12,0:12:478:0:0:0,-3.61236,-43.3679 dDocent_Contig_9806 11 . C A 1926.02 . AB=0.363636;ABP=34.9902;AC=4;AF=0.5;AN=8;AO=72;CIGAR=1X;DP=198;DPB=198;DPRA=0;EPP=159.356;EPPR=276.616;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2870;QR=5047;RO=126;RPL=0;RPP=159.356;RPPR=276.616;RPR=72;RUN=1;SAF=72;SAP=159.356;SAR=0;SRF=126;SRP=276.616;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:51:25,26:25:992:26:1019:-76.655,0,-74.221 0/1:55:42,13:42:1691:13:528:-31.3102,0,-135.854 0/1:73:47,26:47:1884:26:1044:-72.2739,0,-147.783 0/1:19:12,7:12:480:7:279:-19.7607,0,-37.8277 dDocent_Contig_9809 39 . G A 1357.24 . AB=0;ABP=0;AC=0;AF=0;AN=8;AO=4;CIGAR=1X1M1X;DP=273;DPB=273;DPRA=0;EPP=11.6962;EPPR=443.819;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=0.995074;PAO=0;PQA=0;PQR=0;PRO=0;QA=153;QR=8035;RO=203;RPL=0;RPP=11.6962;RPPR=443.819;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=203;SRP=443.819;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:74:63,4,5,1:63:2510:4,5,1:153,202,36:0,-6.41648,-211.904,-2.30273,-196.455,-207.503,-16.0307,-210.171,-206.071,-222.423 0|0:110:75,0,35,0:75:2974:0,35,0:0,1387,0:-91.9687,-114.546,-359.334,0,-245.184,-234.648,-114.546,-359.334,-245.184,-359.334 0|0:56:42,0,13,1:42:1665:0,13,1:0,524,41:-30.5414,-43.1846,-180.226,0,-137.034,-133.12,-39.8,-176.842,-133.649,-176.541 0|0:33:23,0,8,2:23:886:0,8,2:0,311,82:-18.612,-25.5357,-98.2683,0,-72.7154,-70.3071,-18.7633,-91.4987,-65.9453,-90.8967 dDocent_Contig_9810 19 . A C 1885.65 . AB=0.496183;ABP=3.02688;AC=4;AF=0.5;AN=8;AO=65;CIGAR=1X;DP=131;DPB=131;DPRA=0;EPP=144.156;EPPR=146.327;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.954545;PAO=0;PQA=0;PQR=0;PRO=0;QA=2601;QR=2664;RO=66;RPL=0;RPP=144.156;RPPR=146.327;RPR=65;RUN=1;SAF=65;SAP=144.156;SAR=0;SRF=66;SRP=146.327;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:37:18,19:18:733:19:771:-58.5715,0,-55.1554 0/1:42:25,17:25:1006:17:686:-49.4244,0,-78.1921 0/1:36:16,20:16:639:20:802:-61.6587,0,-47.0042 0/1:16:7,9:7:286:9:342:-26.3079,0,-21.2983 dDocent_Contig_9811 193 . C T 81.9931 . AB=0.153846;ABP=43.6001;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=83;DPB=83;DPRA=2.45833;EPP=18.2106;EPPR=168.042;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=273;QR=3035;RO=76;RPL=7;RPP=18.2106;RPPR=168.042;RPR=0;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=168.042;SRR=76;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:39:33,6:33:1322:6:233:-9.59722,0,-107.502 0/0:20:19,1:19:760:1:40:0,-2.02492,-64.7259 0/0:18:18,0:18:714:0:0:0,-5.41854,-64.5822 0/0:6:6,0:6:239:0:0:0,-1.80618,-21.8824 dDocent_Contig_9812 29 . T C 1119 . AB=0.458824;ABP=4.26209;AC=3;AF=0.375;AN=8;AO=39;CIGAR=1X;DP=88;DPB=88;DPRA=9.44444;EPP=87.6977;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1576;QR=1978;RO=49;RPL=0;RPP=87.6977;RPPR=109.412;RPR=39;RUN=1;SAF=39;SAP=87.6977;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:45:29,16:29:1168:16:650:-45.287,0,-91.8512 0/1:29:9,20:9:364:20:803:-63.8575,0,-24.3947 0/1:11:8,3:8:323:3:123:-8.15346,0,-26.1276 0/0:3:3,0:3:123:0:0:0,-0.90309,-11.4648 dDocent_Contig_9813 18 . C A 1193.9 . AB=0.597015;ABP=8.4876;AC=3;AF=0.375;AN=8;AO=41;CIGAR=1X;DP=91;DPB=91;DPRA=0;EPP=92.0407;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1631;QR=2002;RO=50;RPL=0;RPP=92.0407;RPPR=111.584;RPR=41;RUN=1;SAF=41;SAP=92.0407;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:15,2:15:606:2:82:-2.66217,0,-49.7598 0/1:16:9,7:9:367:7:282:-20.9365,0,-28.5786 0/1:34:3,31:3:123:31:1226:-100.379,0,-1.22977 0/0:24:23,1:23:906:1:41:0,-3.13015,-77.7506 dDocent_Contig_9816 107 . N G 66.4848 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=70;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:70:-6.6474,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_9817 177 . A C 675.623 . AB=0.393939;ABP=9.45891;AC=4;AF=0.5;AN=8;AO=26;CIGAR=1X;DP=66;DPB=66;DPRA=0;EPP=59.4686;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1037;QR=1590;RO=40;RPL=26;RPP=59.4686;RPPR=89.8692;RPR=0;RUN=1;SAF=0;SAP=59.4686;SAR=26;SRF=0;SRP=89.8692;SRR=40;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:32:23,9:23:920:9:351:-22.3164,0,-73.4699 0/1:18:8,10:8:316:10:403:-31.2117,0,-23.3854 0/1:9:6,3:6:232:3:123:-8.75552,0,-18.5375 0/1:7:3,4:3:122:4:160:-12.6766,0,-9.26528 dDocent_Contig_9818 12 . C T 100.052 . AB=0.1875;ABP=30.1537;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=110;DPB=110;DPRA=1.23077;EPP=16.0391;EPPR=228.843;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=233;QR=4119;RO=104;RPL=0;RPP=16.0391;RPPR=228.843;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=104;SRP=228.843;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:57:57,0:57:2263:0:0:0,-17.1587,-203.833 0/1:32:26,6:26:1029:6:233:-11.7042,0,-83.2675 0/0:14:14,0:14:541:0:0:0,-4.21442,-49.0144 0/0:7:7,0:7:286:0:0:0,-2.10721,-26.1148 dDocent_Contig_9819 21 . A G 37.1268 . AB=0.1875;ABP=16.582;AC=2;AF=0.25;AN=8;AO=4;CIGAR=1X;DP=44;DPB=44;DPRA=1.13333;EPP=11.6962;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=163;QR=1591;RO=40;RPL=0;RPP=11.6962;RPPR=89.8692;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:8:7,1:7:271:1:40:-1.58744,0,-22.3433 0/0:10:10,0:10:409:0:0:0,-3.0103,-37.1706 0/1:8:6,2:6:241:2:82:-5.37144,0,-19.6584 0/0:18:17,1:17:670:1:41:0,-1.32397,-56.5344 dDocent_Contig_9820 44 . A C 467.851 . AB=0.8;ABP=18.6449;AC=1;AF=0.125;AN=8;AO=16;CIGAR=1X3M1X;DP=62;DPB=62;DPRA=1.42857;EPP=37.7539;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.955556;PAO=0;PQA=0;PQR=0;PRO=0;QA=602;QR=1766;RO=45;RPL=0;RPP=37.7539;RPPR=100.727;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:19:18,0:18:711:0:0:0,-5.41854,-63.9103 0|1:20:4,16:4:160:16:602:-48.4841,0,-8.76341 0|0:10:10,0:10:383:0:0:0,-3.0103,-34.8209 0|0:13:13,0:13:512:0:0:0,-3.91339,-46.426 dDocent_Contig_9821 44 . C T 1702.24 . AB=0.245955;ABP=176.229;AC=4;AF=0.5;AN=8;AO=76;CIGAR=1X;DP=309;DPB=309;DPRA=0;EPP=168.042;EPPR=508.963;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=0.736842;PAIREDR=0.978541;PAO=0;PQA=0;PQR=0;PRO=0;QA=2993;QR=9355;RO=233;RPL=0;RPP=168.042;RPPR=508.963;RPR=76;RUN=1;SAF=76;SAP=168.042;SAR=0;SRF=233;SRP=508.963;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:82:71,11:71:2840:11:437:-14.9971,0,-231.018 0/1:94:73,21:73:2921:21:836:-47.2589,0,-234.691 0/1:55:44,11:44:1777:11:440:-23.3936,0,-143.584 0/1:78:45,33:45:1817:33:1280:-91.9721,0,-140.255 dDocent_Contig_9824 7 . A T 1516.41 . AB=0.456;ABP=5.11229;AC=4;AF=0.5;AN=8;AO=57;CIGAR=1X;DP=125;DPB=125;DPRA=0;EPP=126.784;EPPR=150.67;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.894737;PAIREDR=0.882353;PAO=0;PQA=0;PQR=0;PRO=0;QA=2170;QR=2608;RO=68;RPL=0;RPP=126.784;RPPR=150.67;RPR=57;RUN=1;SAF=57;SAP=126.784;SAR=0;SRF=68;SRP=150.67;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:44:28,16:28:1091:16:615:-42.443,0,-85.248 0/1:25:10,15:10:390:15:553:-42.5785,0,-27.933 0/1:37:19,18:19:731:18:696:-51.8363,0,-54.9825 0/1:19:11,8:11:396:8:306:-22.1809,0,-30.2521 dDocent_Contig_9825 119 . G T 142.322 . AB=0.5;ABP=3.0103;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=41;DPB=41;DPRA=1.24138;EPP=16.0391;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=210;QR=1189;RO=35;RPL=0;RPP=16.0391;RPPR=79.0118;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=79.0118;SRR=35;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:6,6:6:209:6:210:-15.6301,0,-15.5387 0/0:10:10,0:10:350:0:0:0,-3.0103,-31.8375 0/0:5:5,0:5:172:0:0:0,-1.50515,-15.8183 0/0:14:14,0:14:458:0:0:0,-4.21442,-41.5319 dDocent_Contig_9827 93 . C G 52.9485 . AB=0.333333;ABP=5.18177;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=119;DPB=119;DPRA=0.245455;EPP=9.52472;EPPR=254.901;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=104;QR=4043;RO=116;RPL=3;RPP=9.52472;RPPR=254.901;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=116;SRP=254.901;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:48:48,0:48:1700:0:0:0,-14.4494,-153.287 0/0:47:47,0:47:1614:0:0:0,-14.1484,-145.543 0/0:15:15,0:15:528:0:0:0,-4.51545,-47.8517 0/1:9:6,3:6:201:3:104:-6.99382,0,-15.7093 dDocent_Contig_9829 21 . G A 622.121 . AB=0.44898;ABP=4.11819;AC=2;AF=0.25;AN=8;AO=23;CIGAR=1X;DP=105;DPB=105;DPRA=2;EPP=52.9542;EPPR=181.071;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=925;QR=3305;RO=82;RPL=0;RPP=52.9542;RPPR=181.071;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=82;SRP=181.071;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:41:40,1:40:1616:1:40:0,-8.34655,-141.671 0/1:21:6,15:6:238:15:604:-48.3773,0,-15.4702 0/1:28:21,7:21:848:7:281:-17.2328,0,-68.2037 0/0:15:15,0:15:603:0:0:0,-4.51545,-54.6073 dDocent_Contig_9830 14 . G A 307.926 . AB=0.458333;ABP=3.37221;AC=2;AF=0.25;AN=8;AO=11;CIGAR=1X;DP=91;DPB=91;DPRA=0.358209;EPP=26.8965;EPPR=176.728;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.95;PAO=0;PQA=0;PQR=0;PRO=0;QA=446;QR=3164;RO=80;RPL=0;RPP=26.8965;RPPR=176.728;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=80;SRP=176.728;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:26:26,0:26:1027:0:0:0,-7.82678,-92.7201 0/0:41:41,0:41:1625:0:0:0,-12.3422,-146.48 0/1:15:5,10:5:201:10:407:-32.4751,0,-13.9551 0/1:9:8,1:8:311:1:39:-1.18729,0,-25.6397 dDocent_Contig_9831 34 . C T 401.528 . AB=0.12037;ABP=408.593;AC=1;AF=0.125;AN=8;AO=91;CIGAR=1X;DP=1136;DPB=1136;DPRA=0;EPP=151.935;EPPR=2120.43;GTI=0;LEN=1;MEANALT=1.25;MQM=59.989;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.461538;PAIREDR=0.708253;PAO=0;PQA=0;PQR=0;PRO=0;QA=3599;QR=41008;RO=1042;RPL=0;RPP=200.614;RPPR=2265.68;RPR=91;RUN=1;SAF=85;SAP=151.935;SAR=6;SRF=1025;SRP=2120.43;SRR=17;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:359:339,20:339:13290:20:777:0,-37.8249,-1124.9 0/1:324:285,39:285:11226:39:1546:-41.8517,0,-912.066 0/0:341:310,28:310:12231:28:1112:0,-1.77398,-999.6 0/0:112:108,4:108:4261:4:164:0,-18.5655,-368.304 dDocent_Contig_9832 51 . C T 400.912 . AB=0.681818;ABP=9.32731;AC=1;AF=0.125;AN=8;AO=15;CIGAR=1X;DP=52;DPB=52;DPRA=2.2;EPP=35.5824;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=531;QR=1452;RO=37;RPL=15;RPP=35.5824;RPPR=83.3548;RPR=0;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:7,15:7:274:15:531:-41.4891,0,-18.4031 0/0:11:11,0:11:433:0:0:0,-3.31133,-39.3221 0/0:14:14,0:14:545:0:0:0,-4.21442,-49.3913 0/0:5:5,0:5:200:0:0:0,-1.50515,-18.3799 dDocent_Contig_9833 96 . A C 941.457 . AB=0.477273;ABP=3.40511;AC=4;AF=0.5;AN=8;AO=42;CIGAR=1X;DP=88;DPB=88;DPRA=0;EPP=94.2121;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1408;QR=1499;RO=46;RPL=42;RPP=94.2121;RPPR=102.898;RPR=0;RUN=1;SAF=42;SAP=94.2121;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:12,12:12:388:12:406:-29.6417,0,-28.0099 0/1:38:20,18:20:643:18:590:-41.9715,0,-46.7362 0/1:20:12,8:12:402:8:272:-18.7913,0,-30.4829 0/1:6:2,4:2:66:4:140:-11.1387,0,-4.46213 dDocent_Contig_9834 31 . A G 1563.33 . AB=0.471074;ABP=3.88966;AC=4;AF=0.5;AN=8;AO=57;CIGAR=1X;DP=121;DPB=121;DPRA=0;EPP=126.784;EPPR=141.985;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2209;QR=2534;RO=64;RPL=0;RPP=126.784;RPPR=141.985;RPR=57;RUN=1;SAF=57;SAP=126.784;SAR=0;SRF=64;SRP=141.985;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:16,20:16:634:20:750:-56.972,0,-46.5514 0/1:25:18,7:18:727:7:282:-18.2268,0,-58.2293 0/1:35:19,16:19:746:16:606:-44.3256,0,-56.9223 0/1:25:11,14:11:427:14:571:-44.2061,0,-31.2508 dDocent_Contig_9835 111 . A G 1064.18 . AB=0.688525;ABP=21.8416;AC=2;AF=0.25;AN=8;AO=47;CIGAR=1X;DP=151;DPB=151;DPRA=0;EPP=105.07;EPPR=228.843;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1577;QR=3609;RO=104;RPL=0;RPP=105.07;RPPR=228.843;RPR=47;RUN=1;SAF=0;SAP=105.07;SAR=47;SRF=0;SRP=228.843;SRR=104;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:38:15,23:15:538:23:781:-59.166,0,-37.3167 0/1:23:4,19:4:94:19:633:-50.3589,0,-1.76811 0/0:78:74,4:74:2606:4:139:0,-10.6277,-221.938 0/0:12:11,1:11:371:1:24:0,-1.21247,-31.3145 dDocent_Contig_9836 22 . A T 93.0926 . AB=0.192308;ABP=24.391;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=103;DPB=103;DPRA=1.01299;EPP=13.8677;EPPR=215.815;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=205;QR=3891;RO=98;RPL=0;RPP=13.8677;RPPR=215.815;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=98;SRP=215.815;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:41:41,0:41:1627:0:0:0,-12.3422,-146.667 0/1:26:21,5:21:825:5:205:-11.0082,0,-66.7364 0/0:28:28,0:28:1117:0:0:0,-8.42884,-100.815 0/0:8:8,0:8:322:0:0:0,-2.40824,-29.3481 dDocent_Contig_9837 107 . N T 1956.55 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=64;CIGAR=1X;DP=65;DPB=65;DPRA=0;EPP=141.985;EPPR=0;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=2157;QR=0;RO=0;RPL=0;RPP=141.985;RPPR=0;RPR=64;RUN=1;SAF=0;SAP=141.985;SAR=64;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:25:0,25:0:0:25:850:-76.8136,-7.52575,0 1/1:27:0,26:0:0:26:895:-80.5246,-7.82678,0 1/1:4:0,4:0:0:4:136:-12.5757,-1.20412,0 1/1:9:0,9:0:0:9:276:-25.1387,-2.70927,0 dDocent_Contig_9838 108 . G A 1116.68 . AB=0.549296;ABP=4.50892;AC=5;AF=0.625;AN=8;AO=44;CIGAR=1X;DP=76;DPB=76;DPRA=0;EPP=98.5551;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1508;QR=1003;RO=31;RPL=0;RPP=98.5551;RPPR=70.3259;RPR=44;RUN=1;SAF=0;SAP=98.5551;SAR=44;SRF=0;SRP=70.3259;SRR=31;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:17,4:17:542:4:139:-6.40559,0,-42.6802 0/1:40:6,34:6:196:34:1167:-93.2942,0,-5.92084 0/1:9:8,1:8:265:1:35:-0.789359,0,-21.4648 1/1:5:0,5:0:0:5:167:-15.3592,-1.50515,0 dDocent_Contig_9839 98 . N A 95.1749 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=102;QR=0;RO=0;RPL=3;RPP=9.52472;RPPR=0;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:102:-9.51695,-0.90309,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_9840 72 . T C 658.185 . AB=0.410959;ABP=8.03741;AC=2;AF=0.25;AN=8;AO=33;CIGAR=1X;DP=120;DPB=120;DPRA=4.11111;EPP=74.6689;EPPR=191.928;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.908046;PAO=0;PQA=0;PQR=0;PRO=0;QA=1110;QR=3054;RO=87;RPL=33;RPP=74.6689;RPPR=191.928;RPR=0;RUN=1;SAF=33;SAP=74.6689;SAR=0;SRF=87;SRP=191.928;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:44:21,23:21:729:23:759:-55.373,0,-52.6789 0/1:29:22,7:22:753:7:247:-13.8434,0,-59.3499 0/0:38:35,3:35:1259:3:104:0,-1.73612,-103.908 0/0:9:9,0:9:313:0:0:0,-2.70927,-28.5046 dDocent_Contig_9841 170 . T G 240.973 . AB=0.615385;ABP=4.51363;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=92;DPB=92;DPRA=0.493671;EPP=20.3821;EPPR=185.414;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=326;QR=3359;RO=84;RPL=8;RPP=20.3821;RPPR=185.414;RPR=0;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=185.414;SRR=84;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:36:36,0:36:1438:0:0:0,-10.8371,-129.67 0/1:13:5,8:5:192:8:326:-25.7963,0,-13.7344 0/0:23:23,0:23:928:0:0:0,-6.92369,-83.8221 0/0:20:20,0:20:801:0:0:0,-6.0206,-72.4048 dDocent_Contig_9842 119 . T C 123.617 . AB=0.375;ABP=5.18177;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=36;DPB=36;DPRA=2.4;EPP=16.0391;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=206;QR=1039;RO=30;RPL=0;RPP=16.0391;RPPR=68.1545;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=68.1545;SRR=30;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:8:8,0:8:280:0:0:0,-2.40824,-25.5394 0/1:16:10,6:10:330:6:206:-14.0603,0,-25.1997 0/0:10:10,0:10:357:0:0:0,-3.0103,-32.4722 0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672 dDocent_Contig_9843 25 . T C 1115.51 . AB=0.09375;ABP=48.8827;AC=0;AF=0;AN=8;AO=3;CIGAR=2X;DP=114;DPB=114;DPRA=1.14286;EPP=9.52472;EPPR=157.185;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=2838;RO=71;RPL=0;RPP=9.52472;RPPR=157.185;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=71;SRP=157.185;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:28:27,0,1:27:1083:0,1:0,40:0,-8.12781,-97.3599,-4.43316,-94.0649,-93.7639 0|0:21:8,0,13:8:319:0,13:0,528:-41.5449,-43.9531,-70.221,0,-26.669,-22.7556 0|0:32:20,3,9:20:810:3,9:122,358:-23.4483,-19.4035,-85.2953,0,-56.7251,-64.0793 0|0:33:16,0,17:16:626:0,17:0,684:-51.9556,-56.7721,-108.232,0,-51.8565,-46.739 dDocent_Contig_9844 96 . A T 68.6901 . AB=0.192308;ABP=24.391;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=62;DPB=62;DPRA=2.16667;EPP=13.8677;EPPR=126.784;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=175;QR=1943;RO=57;RPL=5;RPP=13.8677;RPPR=126.784;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:21,5:21:712:5:175:-8.26691,0,-56.5707 0/0:5:5,0:5:175:0:0:0,-1.50515,-16.0937 0/0:18:18,0:18:611:0:0:0,-5.41854,-55.3106 0/0:13:13,0:13:445:0:0:0,-3.91339,-40.3784 dDocent_Contig_9845 123 . T C 58.11 . AB=0.210526;ABP=16.8392;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=71;DPB=71;DPRA=1.09615;EPP=11.6962;EPPR=146.327;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=138;QR=2206;RO=66;RPL=0;RPP=11.6962;RPPR=146.327;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=146.327;SRR=66;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:14,4:14:455:4:138:-7.20893,0,-35.7458 0/0:17:17,0:17:562:0:0:0,-5.11751,-50.8939 0/0:22:22,0:22:741:0:0:0,-6.62266,-67.005 0/0:13:13,0:13:448:0:0:0,-3.91339,-40.6502 dDocent_Contig_9846 44 . A G 166.853 . AB=0.193548;ABP=53.5846;AC=3;AF=0.375;AN=8;AO=13;CIGAR=1X2M1X;DP=104;DPB=104;DPRA=0;EPP=31.2394;EPPR=192.024;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.230769;PAIREDR=0.824176;PAO=0;PQA=0;PQR=0;PRO=0;QA=482;QR=3588;RO=91;RPL=0;RPP=31.2394;RPPR=192.024;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=91;SRP=200.614;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:42:41,1:41:1599:1:41:0,-8.54869,-140.062 0|1:35:30,5:30:1191:5:172:-5.27081,0,-96.9355 0|1:19:14,5:14:556:5:198:-12.478,0,-44.665 0|1:8:6,2:6:242:2:71:-4.33382,0,-19.7491 dDocent_Contig_9847 85 . C A 756.25 . AB=0.379747;ABP=12.9331;AC=2;AF=0.25;AN=8;AO=30;CIGAR=1X;DP=153;DPB=153;DPRA=1.06757;EPP=68.1545;EPPR=270.101;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1135;QR=4831;RO=123;RPL=30;RPP=68.1545;RPPR=270.101;RPR=0;RUN=1;SAF=30;SAP=68.1545;SAR=0;SRF=123;SRP=270.101;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:47:47,0:47:1867:0:0:0,-14.1484,-168.247 0/1:65:37,28:37:1455:28:1066:-76.6403,0,-111.635 0/0:27:27,0:27:1043:0:0:0,-8.12781,-94.1565 0/1:14:12,2:12:466:2:69:-2.33516,0,-38.0743 dDocent_Contig_9848 46 . G C 73.8343 . AB=0.235294;ABP=13.3567;AC=2;AF=0.25;AN=8;AO=4;CIGAR=1X;DP=31;DPB=31;DPRA=1.21429;EPP=11.6962;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=164;QR=1036;RO=26;RPL=0;RPP=11.6962;RPPR=59.4686;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:8,1:8:325:1:41:-1.3853,0,-26.9104 0/0:12:11,0:11:428:0:0:0,-3.31133,-38.4709 0/1:8:5,3:5:201:3:123:-9.05655,0,-16.0623 0/0:2:2,0:2:82:0:0:0,-0.60206,-7.77968 dDocent_Contig_9849 57 . T C 43.7381 . AB=0.127273;ABP=69.3784;AC=3;AF=0.375;AN=8;AO=7;CIGAR=1X;DP=61;DPB=61;DPRA=3.05556;EPP=18.2106;EPPR=120.27;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=279;QR=2161;RO=54;RPL=7;RPP=18.2106;RPPR=120.27;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:12,2:12:483:2:79:-3.28282,0,-39.6074 0/1:29:26,3:26:1046:3:119:-2.36514,0,-85.7017 0/1:12:10,2:10:402:2:81:-4.07337,0,-32.9281 0/0:6:6,0:6:230:0:0:0,-1.80618,-21.062 dDocent_Contig_9850 8 . T G 1238.46 . AB=0.104167;ABP=68.3354;AC=4;AF=0.5;AN=8;AO=5;CIGAR=1X9M1X;DP=117;DPB=96.5455;DPRA=0;EPP=13.8677;EPPR=139.813;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=193;QR=2452;RO=63;RPL=0;RPP=13.8677;RPPR=139.813;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=63;SRP=139.813;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:48:29,13,5:29:1134:13,5:501,193:-32.4275,0,-89.3505,-25.3028,-77.413,-117.043 0|1:38:16,22,0:16:620:22,0:845,0:-64.9255,0,-44.6962,-69.742,-51.3189,-120.675 0|1:13:9,3,0:9:359:3,0:116,0:-6.81581,0,-28.6714,-9.52508,-29.5745,-39.0994 0|1:18:9,9,0:9:339:9,0:357,0:-27.0751,0,-25.4431,-29.7844,-28.1523,-57.5504 dDocent_Contig_9851 8 . T C 582.67 . AB=0.278351;ABP=44.4026;AC=3;AF=0.375;AN=8;AO=29;CIGAR=1X;DP=180;DPB=180;DPRA=0;EPP=65.983;EPPR=330.903;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1098;QR=5810;RO=151;RPL=0;RPP=65.983;RPPR=330.903;RPR=29;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=151;SRP=330.903;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:83:81,2:81:3134:2:78:0,-17.582,-274.806 0/1:64:52,12:52:1993:12:456:-22.1213,0,-160.34 0/1:22:12,10:12:453:10:371:-27.1137,0,-34.4941 0/1:11:6,5:6:230:5:193:-14.43,0,-17.755 dDocent_Contig_9852 32 . C T 727.723 . AB=0.277778;ABP=49.335;AC=3;AF=0.375;AN=8;AO=30;CIGAR=1X;DP=124;DPB=124;DPRA=2.25;EPP=68.1545;EPPR=190.127;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.2447;NS=4;NUMALT=1;ODDS=0;PAIRED=0.9;PAIREDR=0.893617;PAO=0;PQA=0;PQR=0;PRO=0;QA=1212;QR=3758;RO=94;RPL=0;RPP=68.1545;RPPR=207.129;RPR=30;RUN=1;SAF=30;SAP=68.1545;SAR=0;SRF=92;SRP=190.127;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:27,3:27:1075:3:121:-2.24909,0,-88.0114 0/1:20:2,18:2:80:18:724:-59.4655,0,-1.57119 0/1:58:49,9:49:1956:9:367:-15.9355,0,-158.353 0/0:16:16,0:16:647:0:0:0,-4.81648,-58.2722 dDocent_Contig_9853 19 . C T 2029.5 . AB=0.4375;ABP=8.98185;AC=4;AF=0.5;AN=8;AO=77;CIGAR=2X1M1X;DP=176;DPB=176;DPRA=0;EPP=170.214;EPPR=217.986;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2911;QR=3900;RO=99;RPL=0;RPP=170.214;RPPR=217.986;RPR=77;RUN=1;SAF=77;SAP=170.214;SAR=0;SRF=99;SRP=217.986;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:74:32,42:32:1272:42:1591:-121.192,0,-92.4813 0|1:54:48,6:48:1882:6:223:-4.1732,0,-153.341 0|1:45:17,28:17:665:28:1059:-82.0752,0,-46.6369 0|1:3:2,1:2:81:1:38:-2.89418,0,-6.78264 dDocent_Contig_9854 35 . A G 132.226 . AB=0.384615;ABP=4.51363;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=59;DPB=59;DPRA=0.847826;EPP=13.8677;EPPR=120.27;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.981481;PAO=0;PQA=0;PQR=0;PRO=0;QA=205;QR=2106;RO=54;RPL=0;RPP=13.8677;RPPR=120.27;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:19:19,0:19:718:0:0:0,-5.71957,-64.928 0/0:11:11,0:11:426:0:0:0,-3.31133,-38.684 0/0:16:16,0:16:638:0:0:0,-4.81648,-57.7513 0/1:13:8,5:8:324:5:205:-14.9216,0,-25.616 dDocent_Contig_9855 17 . A G 674.366 . AB=0.278261;ABP=52.1233;AC=4;AF=0.5;AN=8;AO=32;CIGAR=1X;DP=115;DPB=115;DPRA=0;EPP=72.4974;EPPR=183.243;GTI=0;LEN=1;MEANALT=1;MQM=47.9688;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.09375;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1290;QR=3275;RO=83;RPL=0;RPP=72.4974;RPPR=183.243;RPR=32;RUN=1;SAF=32;SAP=72.4974;SAR=0;SRF=83;SRP=183.243;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:4,20:4:161:20:801:-57.6921,0,-7.65055 0/1:46:41,5:41:1621:5:203:-4.77815,0,-132.277 0/1:30:25,5:25:979:5:204:-9.68005,0,-79.3674 0/1:15:13,2:13:514:2:82:-2.66097,0,-42.0877 dDocent_Contig_9856 33 . A T 3229.03 . AB=0.557522;ABP=6.2579;AC=5;AF=0.625;AN=8;AO=106;CIGAR=3X6M1X;DP=161;DPB=161;DPRA=0;EPP=233.186;EPPR=113.755;GTI=0;LEN=1;MEANALT=1.5;MQM=59.7358;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.95283;PAIREDR=0.960784;PAO=0;PQA=0;PQR=0;PRO=0;QA=4166;QR=1971;RO=51;RPL=0;RPP=233.186;RPPR=113.755;RPR=106;RUN=1;SAF=106;SAP=233.186;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:48:4,0,43:4:152:0,43:0,1671:-136.309,-137.513,-149.977,-0.480164,-12.9443,0 0|1:62:16,0,46:16:617:0,46:0,1819:-145.268,-150.084,-200.746,0,-51.0497,-37.2024 0|1:36:21,3,12:21:817:3,12:120,475:-32.7678,-29.2034,-95.4391,0,-57.247,-63.5212 0|1:15:10,0,5:10:385:0,5:0,201:-13.9554,-16.9657,-48.5648,0,-31.9949,-30.4898 dDocent_Contig_9857 42 . T C 48.7026 . AB=0.214286;ABP=12.937;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=38;DPB=38;DPRA=1.16667;EPP=9.52472;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=117;QR=1406;RO=35;RPL=0;RPP=9.52472;RPPR=79.0118;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:16:16,0:16:637:0:0:0,-4.81648,-57.6626 ./.:.:.:.:.:.:.:. 0/1:14:11,3:11:447:3:117:-6.69416,0,-36.3717 0/0:8:8,0:8:322:0:0:0,-2.40824,-29.3478 dDocent_Contig_9858 209 . N G 120.83 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=0;RO=0;RPL=3;RPP=9.52472;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:81:-7.68573,-0.60206,0 1/1:1:0,1:0:0:1:41:-4.09457,-0.30103,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_9859 54 . A T 73.6151 . AB=0.185185;ABP=26.2531;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=68;DPB=68;DPRA=1.97561;EPP=13.8677;EPPR=139.813;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.984127;PAO=0;PQA=0;PQR=0;PRO=0;QA=187;QR=2400;RO=63;RPL=5;RPP=13.8677;RPPR=139.813;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=63;SRP=139.813;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:12:12,0:12:469:0:0:0,-3.61236,-42.559 0/0:14:14,0:14:522:0:0:0,-4.21442,-47.3102 0/0:15:15,0:15:578:0:0:0,-4.51545,-52.3551 0/1:27:22,5:22:831:5:187:-9.06048,0,-66.9795 dDocent_Contig_9860 38 . C G 796.434 . AB=0.297297;ABP=42.625;AC=4;AF=0.5;AN=8;AO=33;CIGAR=1X;DP=111;DPB=111;DPRA=0;EPP=74.6689;EPPR=172.385;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.974359;PAO=0;PQA=0;PQR=0;PRO=0;QA=1322;QR=3108;RO=78;RPL=0;RPP=74.6689;RPPR=172.385;RPR=33;RUN=1;SAF=33;SAP=74.6689;SAR=0;SRF=78;SRP=172.385;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:5,5:5:205:5:200:-15.3692,0,-15.8247 0/1:37:19,18:19:762:18:714:-53.4501,0,-57.7621 0/1:25:21,4:21:815:4:163:-7.53268,0,-66.1341 0/1:39:33,6:33:1326:6:245:-10.6893,0,-107.861 dDocent_Contig_9861 59 . C T 113.165 . AB=0.3125;ABP=7.89611;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=40;DPB=40;DPRA=4;EPP=4.45795;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.333333;PAIREDR=0.970588;PAO=0;PQA=0;PQR=0;PRO=0;QA=234;QR=1355;RO=34;RPL=6;RPP=16.0391;RPPR=76.8404;RPR=0;RUN=1;SAF=4;SAP=4.45795;SAR=2;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:16:15,1:15:598:1:40:0,-0.820801,-50.1622 0/0:2:2,0:2:82:0:0:0,-0.60206,-7.77968 0/1:16:11,5:11:434:5:194:-13.015,0,-34.5968 0/0:6:6,0:6:241:0:0:0,-1.80618,-22.0665 dDocent_Contig_9862 56 . T C 1192.21 . AB=0.409091;ABP=10.9066;AC=4;AF=0.5;AN=8;AO=45;CIGAR=1X;DP=110;DPB=110;DPRA=0;EPP=100.727;EPPR=144.156;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1759;QR=2387;RO=65;RPL=45;RPP=100.727;RPPR=144.156;RPR=0;RUN=1;SAF=45;SAP=100.727;SAR=0;SRF=65;SRP=144.156;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:33:23,10:23:857:10:393:-25.793,0,-67.508 0/1:49:24,25:24:876:25:960:-71.9497,0,-64.3985 0/1:22:14,8:14:500:8:325:-22.9968,0,-38.7086 0/1:6:4,2:4:154:2:81:-5.87955,0,-12.4273 dDocent_Contig_9863 15 . G T 361.038 . AB=0.40625;ABP=5.45321;AC=2;AF=0.25;AN=8;AO=13;CIGAR=1X;DP=97;DPB=97;DPRA=0.492308;EPP=31.2394;EPPR=185.414;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.97619;PAO=0;PQA=0;PQR=0;PRO=0;QA=524;QR=3331;RO=84;RPL=0;RPP=31.2394;RPPR=185.414;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=84;SRP=185.414;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:42:42,0:42:1666:0:0:0,-12.6433,-150.161 0/0:23:23,0:23:901:0:0:0,-6.92369,-81.3876 0/1:20:8,12:8:317:12:483:-37.7995,0,-22.8734 0/1:12:11,1:11:447:1:41:-0.482207,0,-36.9731 dDocent_Contig_9864 107 . N A 76.789 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=6;CIGAR=1X;DP=7;DPB=7;DPRA=0;EPP=16.0391;EPPR=0;GTI=0;LEN=1;MEANALT=1.33333;MQM=13;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=198;QR=0;RO=0;RPL=0;RPP=16.0391;RPPR=0;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1:0,1:0:0:1:34:-1.29674,-0.30103,0 1/1:5:0,4:0:0:4:130:-4.59244,-1.20412,0 ./.:.:.:.:.:.:.:. 1/1:1:0,1:0:0:1:34:-1.29674,-0.30103,0 dDocent_Contig_9865 39 . C T 193.962 . AB=0.25;ABP=9.52472;AC=3;AF=0.375;AN=8;AO=8;CIGAR=1X;DP=39;DPB=39;DPRA=1.11111;EPP=20.3821;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.875;PAIREDR=0.806452;PAO=0;PQA=0;PQR=0;PRO=0;QA=303;QR=1245;RO=31;RPL=0;RPP=20.3821;RPPR=70.3259;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:4:0,4:0:0:4:149:-13.7735,-1.20412,0 0/0:9:9,0:9:364:0:0:0,-2.70927,-33.1244 0/1:12:9,3:9:360:3:114:-7.01986,0,-29.1496 0/0:14:13,1:13:521:1:40:0,-0.218741,-43.2397 dDocent_Contig_9866 1 . N G 135.632 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=52.5;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=140;QR=0;RO=0;RPL=0;RPP=11.6962;RPPR=0;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:105:-9.76215,-0.90309,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:1:0,1:0:0:1:35:-3.49863,-0.30103,0 dDocent_Contig_9867 70 . C T 93.1714 . AB=0.15625;ABP=68.6973;AC=2;AF=0.25;AN=8;AO=10;CIGAR=1X;DP=146;DPB=146;DPRA=0.780488;EPP=24.725;EPPR=298.331;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.9338;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.794118;PAO=0;PQA=0;PQR=0;PRO=0;QA=347;QR=5455;RO=136;RPL=10;RPP=24.725;RPPR=298.331;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=136;SRP=298.331;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:51:51,0:51:2045:0:0:0,-15.3525,-184.239 0/1:36:29,7:29:1179:7:233:-10.4485,0,-95.5472 0/0:31:31,0:31:1231:0:0:0,-9.33193,-111.048 0/1:28:25,3:25:1000:3:114:-2.20338,0,-81.8681 dDocent_Contig_9868 18 . A C 68.1271 . AB=0.210526;ABP=16.8392;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=60;DPB=60;DPRA=1.39024;EPP=11.6962;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.75;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=154;QR=2199;RO=56;RPL=0;RPP=11.6962;RPPR=124.613;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:24:24,0:24:949:0:0:0,-7.22472,-85.7127 0/1:19:15,4:15:599:4:154:-8.51161,0,-48.5283 0/0:13:13,0:13:505:0:0:0,-3.91339,-45.7837 0/0:4:4,0:4:146:0:0:0,-1.20412,-13.4941 dDocent_Contig_9869 47 . T G 558.178 . AB=0.459459;ABP=3.5385;AC=4;AF=0.5;AN=8;AO=20;CIGAR=1X;DP=72;DPB=72;DPRA=0.416667;EPP=46.4397;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=770;QR=1969;RO=52;RPL=0;RPP=46.4397;RPPR=115.927;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:98:-9.14357,-0.90309,0 0/1:26:11,15:11:409:15:592:-45.791,0,-29.3237 0/0:32:32,0:32:1244:0:0:0,-9.63296,-112.245 0/1:11:9,2:9:316:2:80:-4.28046,0,-25.4541 dDocent_Contig_9871 85 . A T 144.526 . AB=0.235294;ABP=23.7032;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X;DP=96;DPB=96;DPRA=1.74286;EPP=22.5536;EPPR=191.928;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.942529;PAO=0;PQA=0;PQR=0;PRO=0;QA=322;QR=3008;RO=87;RPL=9;RPP=22.5536;RPPR=191.928;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=87;SRP=191.928;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:34:26,8:26:896:8:286:-15.8505,0,-70.7202 0/0:27:26,1:26:915:1:36:0,-4.52953,-79.0691 0/0:30:30,0:30:1032:0:0:0,-9.0309,-93.1852 0/0:5:5,0:5:165:0:0:0,-1.50515,-15.1751 dDocent_Contig_9872 10 . A T 43.944 . AB=0.1875;ABP=16.582;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=78;DPB=78;DPRA=0.774194;EPP=9.52472;EPPR=165.871;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.946667;PAO=0;PQA=0;PQR=0;PRO=0;QA=117;QR=2982;RO=75;RPL=0;RPP=9.52472;RPPR=165.871;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=75;SRP=165.871;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:21:21,0:21:844:0:0:0,-6.32163,-76.2734 0/0:21:21,0:21:838:0:0:0,-6.32163,-75.735 0/0:20:20,0:20:784:0:0:0,-6.0206,-70.8806 0/1:16:13,3:13:516:3:117:-6.09335,0,-41.9705 dDocent_Contig_9873 111 . A C 883.604 . AB=0.723404;ABP=23.3852;AC=2;AF=0.25;AN=8;AO=35;CIGAR=1X;DP=96;DPB=96;DPRA=1.8;EPP=79.0118;EPPR=135.47;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1186;QR=2056;RO=61;RPL=0;RPP=79.0118;RPPR=135.47;RPR=35;RUN=1;SAF=0;SAP=79.0118;SAR=35;SRF=0;SRP=135.47;SRR=61;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:11,15:11:357:15:510:-38.3976,0,-24.6161 0/1:21:2,19:2:70:19:641:-51.6843,0,-0.325766 0/0:34:33,1:33:1119:1:35:0,-6.73639,-97.5134 0/0:15:15,0:15:510:0:0:0,-4.51545,-46.2242 dDocent_Contig_9876 107 . N G 394.778 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=13;CIGAR=1X;DP=13;DPB=13;DPRA=0;EPP=31.2394;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=429;QR=0;RO=0;RPL=0;RPP=31.2394;RPPR=0;RPR=13;RUN=1;SAF=0;SAP=31.2394;SAR=13;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:12:0,12:0:0:12:405:-36.7749,-3.61236,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:1:0,1:0:0:1:24:-2.39989,-0.30103,0 dDocent_Contig_9877 106 . N T 126.685 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=4;CIGAR=2X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=7.37776;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=137;QR=0;RO=0;RPL=0;RPP=11.6962;RPPR=0;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:4:0,4:0:0:4:137:-12.6682,-1.20412,0 .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. dDocent_Contig_9878 38 . C A 115.913 . AB=0.142857;ABP=88.3181;AC=2;AF=0.25;AN=8;AO=14;CIGAR=1X;DP=230;DPB=230;DPRA=0;EPP=33.4109;EPPR=472.048;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=471;QR=8403;RO=216;RPL=0;RPP=33.4109;RPPR=472.048;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=216;SRP=472.048;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:93:91,2:91:3576:2:39:0,-24.2912,-318.174 0/0:60:59,1:59:2257:1:16:0,-16.4618,-201.693 0/1:59:53,6:53:2066:6:213:-1.74035,0,-168.374 0/1:18:13,5:13:504:5:203:-13.2343,0,-40.2835 dDocent_Contig_9880 63 . C T 172.378 . AB=0.411765;ABP=4.1599;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=52;DPB=52;DPRA=1.45714;EPP=18.2106;EPPR=92.2337;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.955556;PAO=0;PQA=0;PQR=0;PRO=0;QA=260;QR=1762;RO=45;RPL=7;RPP=18.2106;RPPR=100.727;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=44;SRP=92.2337;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:10,7:10:402:7:260:-18.6356,0,-31.4224 0/0:11:11,0:11:429:0:0:0,-3.31133,-38.9593 0/0:20:20,0:20:770:0:0:0,-6.0206,-69.6071 0/0:4:4,0:4:161:0:0:0,-1.20412,-14.8749 dDocent_Contig_9881 104 . N G 133.047 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=4;CIGAR=3X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=137;QR=0;RO=0;RPL=0;RPP=11.6962;RPPR=0;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:1:0,1:0:0:1:33:-3.29913,-0.30103,0 1|1:3:0,3:0:0:3:104:-9.70309,-0.90309,0 .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. dDocent_Contig_9882 107 . N C 463.591 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=15;CIGAR=1X2M1X;DP=15;DPB=15;DPRA=0;EPP=35.5824;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=494;QR=0;RO=0;RPL=0;RPP=35.5824;RPPR=0;RPR=15;RUN=1;SAF=0;SAP=35.5824;SAR=15;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:3:0,3:0:0:3:99:-9.2373,-0.90309,0 1|1:3:0,3:0:0:3:91:-8.49097,-0.90309,0 1|1:7:0,7:0:0:7:236:-21.5703,-2.10721,0 1|1:2:0,2:0:0:2:68:-6.45793,-0.60206,0 dDocent_Contig_9883 83 . G A 37.9247 . AB=0.142857;ABP=65.0524;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=123;DPB=123;DPRA=2.50746;EPP=20.3821;EPPR=252.73;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=245;QR=4044;RO=115;RPL=8;RPP=20.3821;RPPR=252.73;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=115;SRP=252.73;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:20:20,0:20:705:0:0:0,-6.0206,-63.7691 0/1:56:48,8:48:1764:8:245:-5.49137,0,-142.164 0/0:14:14,0:14:493:0:0:0,-4.21442,-44.6942 0/0:33:33,0:33:1082:0:0:0,-9.93399,-97.6694 dDocent_Contig_9885 16 . T A 3983.65 . AB=0.457237;ABP=7.83897;AC=4;AF=0.5;AN=8;AO=139;CIGAR=1X;DP=304;DPB=304;DPRA=0;EPP=304.845;EPPR=361.303;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.964029;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5514;QR=6562;RO=165;RPL=0;RPP=304.845;RPPR=361.303;RPR=139;RUN=1;SAF=139;SAP=304.845;SAR=0;SRF=165;SRP=361.303;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:12,13:12:480:13:508:-38.5346,0,-36.0263 0/1:113:47,66:47:1865:66:2647:-204.334,0,-134.037 0/1:105:67,38:67:2661:38:1495:-103.19,0,-208.011 0/1:61:39,22:39:1556:22:864:-59.7047,0,-121.916 dDocent_Contig_9886 10 . T A 74.6202 . AB=0.113208;ABP=140.755;AC=2;AF=0.25;AN=8;AO=12;CIGAR=1X;DP=182;DPB=182;DPRA=1.39474;EPP=29.068;EPPR=372.161;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.8941;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=0.923529;PAO=0;PQA=0;PQR=0;PRO=0;QA=467;QR=6557;RO=170;RPL=0;RPP=29.068;RPPR=372.161;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=170;SRP=372.161;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:67:60,7:60:2319:7:269:-4.40232,0,-188.731 0/0:53:53,0:53:2033:0:0:0,-15.9546,-183.183 0/1:39:34,5:34:1315:5:198:-6.45721,0,-106.858 0/0:23:23,0:23:890:0:0:0,-6.92369,-80.4109 dDocent_Contig_9887 36 . T A 59.7762 . AB=0.166667;ABP=26.1727;AC=1;AF=0.125;AN=8;AO=4;CIGAR=2X;DP=79;DPB=79;DPRA=1.30909;EPP=11.6962;EPPR=165.871;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=158;QR=2994;RO=75;RPL=0;RPP=11.6962;RPPR=165.871;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=75;SRP=165.871;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:24:20,4:20:807:4:158:-7.37555,0,-65.7213 0|0:27:27,0:27:1073:0:0:0,-8.12781,-96.8613 0|0:20:20,0:20:796:0:0:0,-6.0206,-71.9567 0|0:8:8,0:8:318:0:0:0,-2.40824,-28.984 dDocent_Contig_9888 7 . A G 69.2194 . AB=0.181818;ABP=22.3561;AC=3;AF=0.375;AN=8;AO=4;CIGAR=1X1M;DP=39;DPB=39;DPRA=1.83333;EPP=11.6962;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=148;QR=1217;RO=32;RPL=0;RPP=11.6962;RPPR=72.4974;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:6:6,0,0:6:225:0,0:0,0:0,-1.80618,-20.6109,-1.80618,-20.6109,-20.6109 0|1:11:10,1,0:10:373:1,0:38,0:-0.485939,0,-30.6082,-3.49624,-30.9092,-34.0263 0|1:15:12,0,3:12:464:0,3:0,111:-5.83847,-9.45083,-47.5772,0,-38.4994,-37.5963 0|1:7:4,2,1:4:155:2,1:70,37:-4.47744,0,-12.146,-2.64789,-9.72452,-15.1059 dDocent_Contig_9889 8 . G T 278.583 . AB=0.178947;ABP=88.0634;AC=2;AF=0.25;AN=8;AO=21;CIGAR=1X;DP=202;DPB=202;DPRA=0.869048;EPP=48.6112;EPPR=353.817;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=0.857143;PAIREDR=0.900552;PAO=0;PQA=0;PQR=0;PRO=0;QA=810;QR=6902;RO=181;RPL=0;RPP=48.6112;RPPR=396.047;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=176;SRP=353.817;SRR=5;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:51:47,4:47:1785:4:153:0,-1.21092,-146.766 0/0:56:56,0:56:2134:0:0:0,-16.8577,-192.291 0/1:73:60,13:60:2304:13:502:-23.5534,0,-185.6 0/1:22:18,4:18:679:4:155:-7.70278,0,-54.8178 dDocent_Contig_9890 19 . T C 339.482 . AB=0.236111;ABP=46.5604;AC=4;AF=0.5;AN=8;AO=17;CIGAR=1X;DP=72;DPB=72;DPRA=0;EPP=39.9253;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.927273;PAO=0;PQA=0;PQR=0;PRO=0;QA=683;QR=2179;RO=55;RPL=0;RPP=39.9253;RPPR=122.441;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:37:28,9:28:1106:9:360:-21.6252,0,-88.6853 0/1:8:4,4:4:163:4:160:-12.3754,0,-12.6502 0/1:15:13,2:13:512:2:81:-3.17028,0,-41.911 0/1:12:10,2:10:398:2:82:-4.16732,0,-32.567 dDocent_Contig_9891 16 . T A 35.7891 . AB=0.25;ABP=7.35324;AC=1;AF=0.125;AN=8;AO=2;CIGAR=2X;DP=37;DPB=37;DPRA=0.827586;EPP=7.35324;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=1401;RO=35;RPL=0;RPP=7.35324;RPPR=79.0118;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:18:18,0:18:713:0:0:0,-5.41854,-64.4956 0|0:9:9,0:9:365:0:0:0,-2.70927,-33.2149 0|1:8:6,2:6:242:2:81:-5.27749,0,-19.7491 0|0:2:2,0:2:81:0:0:0,-0.60206,-7.68573 dDocent_Contig_9893 24 . T A 198.524 . AB=0.212766;ABP=36.6912;AC=2;AF=0.25;AN=8;AO=10;CIGAR=1X;DP=59;DPB=59;DPRA=3.91667;EPP=24.725;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.8;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=407;QR=1974;RO=49;RPL=0;RPP=24.725;RPPR=109.412;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:21,7:21:842:7:284:-17.5049,0,-67.6656 0/1:19:16,3:16:644:3:123:-5.74522,0,-52.5706 0/0:9:9,0:9:365:0:0:0,-2.70927,-33.2151 0/0:3:3,0:3:123:0:0:0,-0.90309,-11.4648 dDocent_Contig_9894 7 . A G 135.103 . AB=0.2;ABP=42.0968;AC=3;AF=0.375;AN=8;AO=10;CIGAR=1X1M1I3M2X1M2X;DP=58;DPB=59.1;DPRA=2.08333;EPP=24.725;EPPR=105.07;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=0.7;PAIREDR=0.574468;PAO=0;PQA=0;PQR=0;PRO=0;QA=366;QR=1808;RO=47;RPL=0;RPP=24.725;RPPR=105.07;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:8:8,0:8:303:0:0:0,-2.40824,-27.6275 0|1:11:8,2:8:310:2:76:-3.83792,0,-24.8901 0|1:21:17,4:17:644:4:141:-6.71402,0,-51.9716 0|1:18:14,4:14:551:4:149:-8.35474,0,-44.5168 dDocent_Contig_9896 107 . N C 775.388 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=34;CIGAR=1X;DP=34;DPB=34;DPRA=0;EPP=76.8404;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=25.7941;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1119;QR=0;RO=0;RPL=0;RPP=76.8404;RPPR=0;RPR=34;RUN=1;SAF=0;SAP=76.8404;SAR=34;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:7:0,7:0:0:7:213:-15.0876,-2.10721,0 1/1:9:0,9:0:0:9:313:-20.8737,-2.70927,0 1/1:11:0,11:0:0:11:361:-24.8378,-3.31133,0 1/1:7:0,7:0:0:7:232:-16.0407,-2.10721,0 dDocent_Contig_9897 13 . T A 625.333 . AB=0.342466;ABP=18.746;AC=3;AF=0.375;AN=8;AO=25;CIGAR=1X;DP=96;DPB=96;DPRA=1.05797;EPP=57.2971;EPPR=157.185;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=987;QR=2829;RO=71;RPL=0;RPP=57.2971;RPPR=157.185;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=71;SRP=157.185;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:23:23,0:23:916:0:0:0,-6.92369,-82.7419 0/1:35:19,16:19:768:16:635:-46.945,0,-58.9039 0/1:27:22,5:22:884:5:199:-10.1596,0,-71.7397 0/1:11:7,4:7:261:4:153:-10.8266,0,-20.5298 dDocent_Contig_9898 61 . A T 107.087 . AB=0.8;ABP=6.91895;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=59;DPB=59;DPRA=0.277778;EPP=11.6962;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.927273;PAO=0;PQA=0;PQR=0;PRO=0;QA=150;QR=2167;RO=55;RPL=4;RPP=11.6962;RPPR=122.441;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:18:18,0:18:706:0:0:0,-5.41854,-63.8647 0/0:18:18,0:18:708:0:0:0,-5.41854,-64.0402 0/0:18:18,0:18:715:0:0:0,-5.41854,-64.676 0/1:5:1,4:1:38:4:150:-12.3555,0,-2.29212 dDocent_Contig_9899 12 . G A 833.896 . AB=0.0384615;ABP=147.33;AC=0;AF=0;AN=8;AO=3;CIGAR=1X2M1X1M1X;DP=135;DPB=135;DPRA=0;EPP=9.52472;EPPR=211.472;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.9375;PAO=0;PQA=0;PQR=0;PRO=0;QA=120;QR=3746;RO=96;RPL=0;RPP=9.52472;RPPR=211.472;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=96;SRP=211.472;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:27:19,0,8:19:754:0,8:0,322:-21.2209,-26.9405,-89.0037,0,-62.4636,-60.0554 0|0:30:24,0,6:24:922:0,6:0,238:-12.7633,-19.988,-95.6588,0,-76.0646,-74.2584 0|0:40:30,2,8:30:1164:2,8:80,318:-17.1481,-19.5883,-114.609,0,-89.0282,-93.2109 0|0:38:23,1,14:23:906:1,14:40,565:-39.6553,-43.2842,-117.513,0,-71.2349,-70.3158 dDocent_Contig_9901 15 . C A 82.3565 . AB=0.146341;ABP=47.552;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=136;DPB=136;DPRA=1.29474;EPP=16.0391;EPPR=285.302;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=240;QR=5122;RO=130;RPL=0;RPP=16.0391;RPPR=285.302;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=130;SRP=285.302;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:41:35,6:35:1346:6:240:-9.63359,0,-109.051 0/0:51:51,0:51:2021:0:0:0,-15.3525,-182.086 0/0:19:19,0:19:763:0:0:0,-5.71957,-68.9911 0/0:25:25,0:25:992:0:0:0,-7.52575,-89.576 dDocent_Contig_9902 40 . C T 2090.85 . AB=0.0955056;ABP=255.975;AC=1;AF=0.125;AN=8;AO=17;CIGAR=3M1I10M1X3M;DP=178;DPB=187;DPRA=0;EPP=39.9253;EPPR=107.241;GTI=0;LEN=1;MEANALT=5.5;MQM=60;MQMR=60;NS=4;NUMALT=6;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=467;QR=1862;RO=48;RPL=0;RPP=39.9253;RPPR=107.241;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:82:21,3,0,0,35,19,2:21:813:3,0,0,35,19,2:34,0,0,1345,735,80:-104.097,-108.275,-174.158,-110.419,-175.062,-177.209,-110.419,-175.062,-177.209,-177.209,0,-64.6658,-66.8059,-66.8059,-56.2698,-50.0443,-114.695,-116.839,-116.839,-6.42322,-111.12,-103.828,-168.471,-170.618,-170.618,-60.2139,-110.248,-170.016 0|0:56:10,8,1,4,29,0,0:10:392:8,1,4,29,0,0:223,40,157,1127,0,0:-89.6398,-75.0117,-104.844,-89.354,-103.957,-121.296,-79.734,-94.3383,-108.682,-110.774,0,-14.6389,-28.972,-19.3471,-23.5397,-92.6501,-107.252,-121.597,-111.978,-32.2696,-124.893,-92.6501,-107.252,-121.597,-111.978,-32.2696,-124.893,-124.893 0|1:18:7,4,3,1,0,2,1:7:270:4,3,1,0,2,1:140,121,41,0,78,39:-9.26618,0,-20.9626,-1.391,-12.1896,-22.6671,-7.98642,-18.7812,-20.1839,-29.8616,-11.3734,-22.1667,-23.5702,-30.1626,-33.5483,-4.95978,-15.7554,-17.1569,-23.7499,-27.1358,-26.5338,-8.1666,-18.961,-20.3635,-26.9562,-30.342,-23.9294,-30.041 0|0:22:10,2,5,2,0,1,2:10:387:2,5,2,0,1,2:70,200,73,0,40,79:-13.4752,-10.797,-41.9822,0,-26.106,-30.2921,-10.5256,-36.6231,-25.8356,-41.7123,-16.4855,-42.5843,-31.7972,-42.3144,-48.2762,-13.189,-39.2886,-28.501,-39.0187,-44.9804,-44.6794,-9.9829,-36.0831,-25.2949,-35.813,-41.7747,-38.4788,-41.1726 dDocent_Contig_9903 15 . G C 80.2568 . AB=0.142857;ABP=49.5419;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=129;DPB=129;DPRA=1.44828;EPP=16.0391;EPPR=270.101;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=241;QR=4775;RO=123;RPL=0;RPP=16.0391;RPPR=270.101;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=123;SRP=270.101;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:42:36,6:36:1409:6:241:-9.42362,0,-114.434 0/0:45:45,0:45:1725:0:0:0,-13.5463,-155.493 0/0:32:32,0:32:1253:0:0:0,-9.63296,-113.052 0/0:10:10,0:10:388:0:0:0,-3.0103,-35.274 dDocent_Contig_9905 13 . T C 825.911 . AB=0.28;ABP=55.5599;AC=4;AF=0.5;AN=8;AO=35;CIGAR=1X;DP=125;DPB=125;DPRA=0;EPP=79.0118;EPPR=198.443;GTI=0;LEN=1;MEANALT=1;MQM=59.5714;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.588889;PAO=0;PQA=0;PQR=0;PRO=0;QA=1402;QR=3570;RO=90;RPL=0;RPP=79.0118;RPPR=198.443;RPR=35;RUN=1;SAF=35;SAP=79.0118;SAR=0;SRF=90;SRP=198.443;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:34:25,9:25:973:9:368:-23.2503,0,-77.6305 0/1:23:20,3:20:803:3:123:-4.5411,0,-65.6652 0/1:29:19,10:19:758:10:394:-27.0627,0,-59.8125 0/1:39:26,13:26:1036:13:517:-35.1346,0,-81.7961 dDocent_Contig_9908 7 . A G 671.433 . AB=0.0869565;ABP=37.093;AC=0;AF=0;AN=8;AO=2;CIGAR=1M1X6M1X2M;DP=90;DPB=83.9091;DPRA=0;EPP=7.35324;EPPR=87.6977;GTI=0;LEN=1;MEANALT=5;MQM=60;MQMR=60;NS=4;NUMALT=4;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=71;QR=1461;RO=39;RPL=0;RPP=7.35324;RPPR=87.6977;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:29:18,0,5,0,4:18:669:0,5,0,4:0,178,0,157:-9.08631,-14.5048,-69.2645,0,-54.7593,-53.2542,-14.5048,-69.2645,-54.7593,-69.2645,-1.57329,-56.3478,-41.8421,-56.3478,-55.1437 0|0:23:12,2,0,0,6:12:458:2,0,0,6:71,0,0,244:-16.5579,-14.3894,-51.3687,-20.1703,-51.9708,-57.753,-20.1703,-51.9708,-57.753,-57.753,0,-31.833,-37.6158,-37.6158,-35.8096 0|0:32:8,0,4,9,11:8:308:0,4,9,11:0,139,341,423:-34.9841,-37.3924,-62.6841,-26.0989,-51.3893,-50.1852,-9.43283,-34.726,-23.4332,-32.0167,-2.66511,-27.9607,-16.6679,0,-24.6493 0|0:6:1,0,0,3,2:1:26:0,0,3,2:0,0,115,81:-13.9097,-14.2108,-16.2276,-14.2108,-16.2276,-16.2276,-4.78488,-6.77551,-6.77551,-5.87242,-7.52301,-9.53106,-9.53106,0,-8.929 dDocent_Contig_9909 107 . N C 314.745 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=10;CIGAR=1X;DP=10;DPB=10;DPRA=0;EPP=24.725;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=11.5366;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=346;QR=0;RO=0;RPL=0;RPP=24.725;RPPR=0;RPR=10;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:10:0,10:0:0:10:346:-31.4745,-3.0103,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_9910 25 . T A 135.469 . AB=0.205882;ABP=28.557;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=117;DPB=117;DPRA=1.22892;EPP=18.2106;EPPR=241.872;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.990909;PAO=0;PQA=0;PQR=0;PRO=0;QA=279;QR=4194;RO=110;RPL=0;RPP=18.2106;RPPR=241.872;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=110;SRP=241.872;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:35:35,0:35:1353:0:0:0,-10.536,-122.042 0/0:20:20,0:20:763:0:0:0,-6.0206,-68.9947 0/1:34:27,7:27:1008:7:279:-15.2458,0,-80.7809 0/0:28:28,0:28:1070:0:0:0,-8.42884,-96.5887 dDocent_Contig_9911 9 . T G 1135.9 . AB=0.268421;ABP=91.5149;AC=3;AF=0.375;AN=8;AO=51;CIGAR=1X;DP=197;DPB=197;DPRA=9.04762;EPP=113.755;EPPR=317.874;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.97931;PAO=0;PQA=0;PQR=0;PRO=0;QA=1947;QR=5283;RO=145;RPL=0;RPP=113.755;RPPR=317.874;RPR=51;RUN=1;SAF=51;SAP=113.755;SAR=0;SRF=145;SRP=317.874;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:80:51,29:51:1891:29:1121:-77.1101,0,-146.364 0/1:77:61,15:61:2229:15:553:-26.8737,0,-177.618 0/1:33:26,7:26:936:7:273:-15.004,0,-74.6171 0/0:7:7,0:7:227:0:0:0,-2.10721,-20.7414 dDocent_Contig_9912 115 . C G 448.473 . AB=0.224719;ABP=61.5913;AC=1;AF=0.125;AN=8;AO=23;CIGAR=1X;DP=218;DPB=218;DPRA=8.75;EPP=52.9542;EPPR=424.276;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=921;QR=7598;RO=194;RPL=23;RPP=52.9542;RPPR=424.276;RPR=0;RUN=1;SAF=0;SAP=52.9542;SAR=23;SRF=0;SRP=424.276;SRR=194;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:89:69,20:69:2696:20:808:-46.2453,0,-215.977 0/0:80:79,1:79:3066:1:32:0,-20.8831,-272.831 0/0:41:39,2:39:1553:2:81:0,-4.6565,-132.326 0/0:8:7,0:7:283:0:0:0,-2.10721,-25.74 dDocent_Contig_9913 19 . A G 545.265 . AB=0.407407;ABP=7.03155;AC=1;AF=0.166667;AN=6;AO=22;CIGAR=1X1M1X;DP=97;DPB=97;DPRA=2.51163;EPP=50.7827;EPPR=163.699;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.986486;PAO=0;PQA=0;PQR=0;PRO=0;QA=801;QR=2893;RO=74;RPL=0;RPP=50.7827;RPPR=163.699;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=74;SRP=163.699;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:54:31,22:31:1209:22:801:-56.0494,0,-92.7298 0|0:33:33,0:33:1294:0:0:0,-9.93399,-116.73 0|0:10:10,0:10:390:0:0:0,-3.0103,-35.4547 .:.:.:.:.:.:.:. dDocent_Contig_9914 59 . T G 52.093 . AB=0.153846;ABP=43.6001;AC=2;AF=0.25;AN=8;AO=7;CIGAR=1X;DP=63;DPB=63;DPRA=2;EPP=18.2106;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=0.857143;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=241;QR=2103;RO=56;RPL=7;RPP=18.2106;RPPR=124.613;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:14,4:14:538:4:130:-6.60161,0,-43.3467 0/0:9:9,0:9:303:0:0:0,-2.70927,-27.5909 0/0:15:14,1:14:540:1:37:0,-0.817621,-45.247 0/1:21:19,2:19:722:2:74:-0.704246,0,-58.9885 dDocent_Contig_9915 18 . G A 131.608 . AB=0.121212;ABP=85.263;AC=4;AF=0.5;AN=8;AO=10;CIGAR=1X;DP=78;DPB=78;DPRA=2.26667;EPP=24.725;EPPR=150.67;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=383;QR=2675;RO=68;RPL=0;RPP=24.725;RPPR=150.67;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=68;SRP=150.67;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:57:50,7:50:1971:7:266:-7.13933,0,-160.434 0/0:10:10,0:10:396:0:0:0,-3.0103,-35.9972 1/1:2:0,2:0:0:2:78:-7.40278,-0.60206,0 0/1:9:8,1:8:308:1:39:-1.18729,0,-25.3693 dDocent_Contig_9916 72 . G C 162.559 . AB=0.156522;ABP=120.855;AC=2;AF=0.25;AN=8;AO=20;CIGAR=1X;DP=180;DPB=180;DPRA=3.95238;EPP=46.4397;EPPR=350.446;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.55;PAIREDR=0.84375;PAO=0;PQA=0;PQR=0;PRO=0;QA=655;QR=5248;RO=160;RPL=20;RPP=46.4397;RPPR=350.446;RPR=0;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=160;SRP=350.446;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:51:49,2:49:1605:2:65:0,-9.17908,-138.56 0/1:50:39,11:39:1262:11:363:-17.9387,0,-98.8202 0/1:65:58,7:58:1921:7:227:-1.18148,0,-153.602 0/0:14:14,0:14:460:0:0:0,-4.21442,-41.7164 dDocent_Contig_9917 9 . T A 715.257 . AB=0.326531;ABP=28.6248;AC=4;AF=0.5;AN=8;AO=32;CIGAR=1X1M1X;DP=98;DPB=98;DPRA=0;EPP=72.4974;EPPR=146.327;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.5625;PAIREDR=0.727273;PAO=0;PQA=0;PQR=0;PRO=0;QA=1189;QR=2563;RO=66;RPL=0;RPP=72.4974;RPPR=146.327;RPR=32;RUN=1;SAF=32;SAP=72.4974;SAR=0;SRF=66;SRP=146.327;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:22:14,8:14:545:8:295:-20.2799,0,-42.7701 0|1:31:21,10:21:813:10:362:-23.5869,0,-64.1613 0|1:23:17,6:17:664:6:227:-13.8696,0,-53.1718 0|1:22:14,8:14:541:8:305:-21.1873,0,-42.4118 dDocent_Contig_9919 32 . C G 1122.19 . AB=0.368421;ABP=20.1535;AC=2;AF=0.25;AN=8;AO=43;CIGAR=1X;DP=141;DPB=141;DPRA=5.54167;EPP=96.3836;EPPR=215.815;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1700;QR=3892;RO=98;RPL=0;RPP=96.3836;RPPR=215.815;RPR=43;RUN=1;SAF=43;SAP=96.3836;SAR=0;SRF=98;SRP=215.815;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:85:53,32:53:2107:32:1256:-87.7163,0,-164.231 0/1:29:19,10:19:765:10:403:-27.9002,0,-60.4406 0/0:19:18,1:18:703:1:41:0,-1.625,-59.4976 0/0:8:8,0:8:317:0:0:0,-2.40824,-28.8964 dDocent_Contig_9920 136 . G A 147.905 . AB=0.368421;ABP=5.8675;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=51;DPB=51;DPRA=3.25;EPP=20.3821;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=278;QR=1397;RO=43;RPL=0;RPP=20.3821;RPPR=96.3836;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=96.3836;SRR=43;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:20:19,1:19:609:1:35:0,-2.52197,-51.6132 0/1:19:12,7:12:399:7:243:-16.4893,0,-30.5113 0/0:9:9,0:9:287:0:0:0,-2.70927,-26.1389 0/0:3:3,0:3:102:0:0:0,-0.90309,-9.5168 dDocent_Contig_9921 51 . A T 372.467 . AB=0.279412;ABP=31.7504;AC=2;AF=0.25;AN=8;AO=19;CIGAR=1X;DP=91;DPB=91;DPRA=2.95652;EPP=44.2683;EPPR=157.185;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=669;QR=2421;RO=71;RPL=19;RPP=44.2683;RPPR=157.185;RPR=0;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=71;SRP=157.185;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:16:16,0:16:532:0:0:0,-4.81648,-48.196 0/1:45:28,16:28:967:16:562:-37.5768,0,-74.0188 0/1:23:20,3:20:684:3:107:-3.05848,0,-54.9559 0/0:7:7,0:7:238:0:0:0,-2.10721,-21.7524 dDocent_Contig_9922 10 . C A 181.425 . AB=0.0784314;ABP=81.7368;AC=0;AF=0;AN=8;AO=4;CIGAR=1X1M1X;DP=170;DPB=170;DPRA=0.894737;EPP=11.6962;EPPR=335.246;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=160;QR=6051;RO=153;RPL=0;RPP=11.6962;RPPR=335.246;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=153;SRP=335.246;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:52:50,0,2:50:1983:0,2:0,76:0,-15.0515,-178.302,-8.44002,-172.071,-171.469 0|0:62:62,0,0:62:2455:0,0:0,0:0,-18.6639,-221.117,-18.6639,-221.117,-221.117 0|0:51:37,4,10:37:1463:4,10:160,368:-18.9239,-16.8728,-136.08,0,-107.205,-117.376 0|0:5:4,0,1:4:150:0,1:0,41:-2.58942,-3.79354,-16.0495,0,-12.6585,-12.3575 dDocent_Contig_9923 11 . C T 176.637 . AB=0.388889;ABP=4.9405;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=55;DPB=55;DPRA=1.45946;EPP=18.2106;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=268;QR=1890;RO=48;RPL=0;RPP=18.2106;RPPR=107.241;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:11,7:11:429:7:268:-19.0617,0,-33.5426 0/0:9:9,0:9:353:0:0:0,-2.70927,-32.1292 0/0:15:15,0:15:600:0:0:0,-4.51545,-54.3397 0/0:13:13,0:13:508:0:0:0,-3.91339,-46.0608 dDocent_Contig_9924 57 . G T 69.6425 . AB=0.3;ABP=6.48466;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=45;DPB=45;DPRA=0.857143;EPP=9.52472;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=1674;RO=42;RPL=3;RPP=9.52472;RPPR=94.2121;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:7,3:7:286:3:122:-8.36219,0,-23.1045 0/0:13:13,0:13:516:0:0:0,-3.91339,-46.7837 0/0:9:9,0:9:364:0:0:0,-2.70927,-33.125 0/0:13:13,0:13:508:0:0:0,-3.91339,-46.0649 dDocent_Contig_9925 153 . C T 356.078 . AB=0.394737;ABP=6.66752;AC=2;AF=0.25;AN=8;AO=15;CIGAR=1X;DP=57;DPB=57;DPRA=2;EPP=35.5824;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=553;QR=1644;RO=42;RPL=0;RPP=35.5824;RPPR=94.2121;RPR=15;RUN=1;SAF=0;SAP=35.5824;SAR=15;SRF=0;SRP=94.2121;SRR=42;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:17:17,0:17:655:0:0:0,-5.11751,-59.2771 0/0:2:2,0:2:81:0:0:0,-0.60206,-7.68573 0/1:18:8,10:8:307:10:384:-29.4952,0,-22.5667 0/1:20:15,5:15:601:5:169:-9.51027,0,-48.407 dDocent_Contig_9926 11 . A G 630.073 . AB=0.0428571;ABP=257.135;AC=4;AF=0.5;AN=8;AO=6;CIGAR=2X3M1X;DP=224;DPB=224;DPRA=0;EPP=16.0391;EPPR=320.045;GTI=0;LEN=1;MEANALT=3.33333;MQM=14.6667;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=0.993151;PAO=0;PQA=0;PQR=0;PRO=0;QA=206;QR=5732;RO=146;RPL=0;RPP=16.0391;RPPR=320.045;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=146;SRP=320.045;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:84:52,20,0,11:52:2051:20,0,11:552,0,438:-24.5999,0,-162.728,-40.2535,-168.748,-209.057,-4.14319,-132.683,-172.987,-169.676 0|1:45:31,10,3,1:31:1222:10,3,1:318,102,35:-15.0819,0,-97.7033,-21.407,-97.6932,-121.107,-21.5602,-97.8665,-119.162,-121.887 0|1:57:37,12,2,4:37:1440:12,2,4:349,69,142:-15.6359,0,-114.829,-24.8776,-116.54,-142.679,-15.1855,-106.874,-131.713,-132.412 0|1:38:26,10,1,0:26:1019:10,1,0:304,35,0:-15.0875,0,-80.9814,-21.79,-82.8655,-105.359,-22.9143,-83.9917,-105.66,-106.789 dDocent_Contig_9927 8 . G A 986.616 . AB=0.291391;ABP=60.0869;AC=4;AF=0.5;AN=8;AO=44;CIGAR=1X;DP=151;DPB=151;DPRA=0;EPP=98.5551;EPPR=235.358;GTI=0;LEN=1;MEANALT=1;MQM=59.8409;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.909091;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1668;QR=4061;RO=107;RPL=0;RPP=98.5551;RPPR=235.358;RPR=44;RUN=1;SAF=44;SAP=98.5551;SAR=0;SRF=107;SRP=235.358;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:38:31,7:31:1157:7:264:-12.6797,0,-92.9845 0/1:68:41,27:41:1579:27:1018:-71.4435,0,-121.908 0/1:23:18,5:18:685:5:191:-10.6348,0,-55.0576 0/1:22:17,5:17:640:5:195:-11.3015,0,-51.3109 dDocent_Contig_9928 209 . N G 230.483 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=6;CIGAR=1X;DP=6;DPB=6;DPRA=0;EPP=16.0391;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=244;QR=0;RO=0;RPL=6;RPP=16.0391;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:4:0,4:0:0:4:162:-14.967,-1.20412,0 1/1:2:0,2:0:0:2:82:-7.77968,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_9929 8 . G A 260.154 . AB=0.26;ABP=28.0257;AC=2;AF=0.25;AN=8;AO=13;CIGAR=1X;DP=56;DPB=56;DPRA=8.33333;EPP=31.2394;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=486;QR=1654;RO=43;RPL=0;RPP=31.2394;RPPR=96.3836;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5,0:5:195:0:0:0,-1.50515,-17.9242 0/1:32:22,10:22:845:10:369:-23.9209,0,-66.7389 0/0:1:1,0:1:39:0:0:0,-0.30103,-3.89656 0/1:18:15,3:15:575:3:117:-5.49184,0,-46.6738 dDocent_Contig_9930 107 . N G 156.173 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=5;CIGAR=1X;DP=5;DPB=5;DPRA=0;EPP=13.8677;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=163;QR=0;RO=0;RPL=0;RPP=13.8677;RPPR=0;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:99:-9.23712,-0.90309,0 1/1:2:0,2:0:0:2:64:-6.07837,-0.60206,0 dDocent_Contig_9931 7 . A G 514.71 . AB=0.111111;ABP=156.702;AC=3;AF=0.375;AN=8;AO=13;CIGAR=1X3M;DP=173;DPB=173;DPRA=0.696429;EPP=31.2394;EPPR=272.273;GTI=0;LEN=1;MEANALT=2.66667;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=452;QR=4658;RO=124;RPL=0;RPP=31.2394;RPPR=272.273;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=124;SRP=272.273;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:74:45,6,19,4:45:1706:6,19,4:188,620,129:-35.4726,-33.9109,-172.024,0,-124.829,-134.212,-38.6197,-163.434,-129.537,-177.336 0|1:24:17,0,1,6:17:615:0,1,6:0,38,220:-12.8528,-17.9703,-68.1662,-14.8519,-65.049,-64.7479,0,-50.1835,-47.066,-48.3773 0|0:56:51,1,4,0:51:1921:1,4,0:36,154,0:0,-12.4201,-169.527,-2.68799,-157.183,-158.916,-15.3525,-169.828,-160.12,-172.765 0|1:19:11,4,1,3:11:416:4,1,3:145,29,103:-8.54352,0,-32.9329,-9.5542,-31.8337,-43.3695,-3.49494,-25.7808,-35.3139,-36.7143 dDocent_Contig_9932 36 . C G 304.75 . AB=0.302326;ABP=17.6046;AC=2;AF=0.25;AN=8;AO=14;CIGAR=1X3M1X;DP=71;DPB=71;DPRA=1.81818;EPP=33.4109;EPPR=126.784;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.785714;PAIREDR=0.719298;PAO=0;PQA=0;PQR=0;PRO=0;QA=552;QR=2261;RO=57;RPL=0;RPP=33.4109;RPPR=126.784;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:11:11,0:11:438:0:0:0,-3.31133,-39.7753 0|1:26:18,8:18:719:8:320:-21.3413,0,-57.2118 0|0:17:16,1:16:629:1:40:0,-1.12183,-52.9499 0|1:17:12,5:12:475:5:192:-12.5316,0,-37.9815 dDocent_Contig_9934 25 . C A 3109.03 . AB=0.37785;ABP=42.7971;AC=4;AF=0.5;AN=8;AO=116;CIGAR=1X;DP=307;DPB=307;DPRA=0;EPP=254.901;EPPR=417.762;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4551;QR=7693;RO=191;RPL=0;RPP=254.901;RPPR=417.762;RPR=116;RUN=1;SAF=116;SAP=254.901;SAR=0;SRF=191;SRP=417.762;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:86:78,8:78:3153:8:325:-3.73106,0,-257.943 0/1:126:65,61:65:2615:61:2378:-176.249,0,-197.543 0/1:54:25,29:25:1012:29:1133:-85.9916,0,-75.1172 0/1:41:23,18:23:913:18:715:-52.3271,0,-70.1274 dDocent_Contig_9935 7 . A T 340.367 . AB=0.348837;ABP=11.5447;AC=3;AF=0.375;AN=8;AO=15;CIGAR=1X;DP=47;DPB=47;DPRA=3.58333;EPP=35.5824;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1.33333;MQM=54;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=0.6;PAIREDR=0.903226;PAO=0;PQA=0;PQR=0;PRO=0;QA=573;QR=1195;RO=31;RPL=0;RPP=35.5824;RPPR=70.3259;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:10,4:10:384:4:153:-9.87011,0,-30.7015 0/1:16:7,9:7:270:9:344:-26.2082,0,-19.849 0/1:13:10,2:10:387:2:76:-3.35148,0,-31.4491 0/0:4:4,0:4:154:0:0:0,-1.20412,-14.2336 dDocent_Contig_9936 13 . A G 71.3346 . AB=0.172414;ABP=30.0414;AC=2;AF=0.25;AN=8;AO=6;CIGAR=1M1X20M;DP=68;DPB=67.8636;DPRA=1.55556;EPP=16.0391;EPPR=128.956;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.5;PAIREDR=0.517241;PAO=0;PQA=0;PQR=0;PRO=0;QA=244;QR=2300;RO=58;RPL=0;RPP=16.0391;RPPR=128.956;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:15:13,0,2:13:518:0,2:0,80:-3.07634,-6.98973,-49.6461,0,-43.0557,-42.4536 0|0:27:24,2,1:24:952:2,1:76,41:0,-1.01206,-78.7649,-3.83072,-75.9823,-81.9125 0|0:12:12,0,0:12:477:0,0:0,0:0,-3.61236,-43.2826,-3.61236,-43.2826,-43.2826 0|1:14:9,1,3:9:353:1,3:41,123:-7.44594,-6.77063,-35.488,0,-25.6329,-28.1154 dDocent_Contig_9937 29 . C T 45.9976 . AB=0.131579;ABP=47.8112;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=180;DPB=180;DPRA=0.802817;EPP=13.8677;EPPR=383.018;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=58.9886;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.96;PAO=0;PQA=0;PQR=0;PRO=0;QA=193;QR=6941;RO=175;RPL=0;RPP=13.8677;RPPR=383.018;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=175;SRP=383.018;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:54:54,0:54:2160:0:0:0,-16.2556,-194.456 0/0:48:48,0:48:1884:0:0:0,-14.4494,-163.26 0/0:40:40,0:40:1601:0:0:0,-12.0412,-144.321 0/1:38:33,5:33:1296:5:193:-6.29872,0,-105.468 dDocent_Contig_9939 131 . G A 2630.03 . AB=0.279503;ABP=206.98;AC=4;AF=0.5;AN=8;AO=135;CIGAR=1X;DP=483;DPB=483;DPRA=0;EPP=296.159;EPPR=754.34;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4601;QR=12051;RO=346;RPL=0;RPP=296.159;RPPR=754.34;RPR=135;RUN=1;SAF=0;SAP=296.159;SAR=135;SRF=0;SRP=754.34;SRR=346;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:151:128,21:128:4467:21:725:-20.6218,0,-357.277 0/1:173:113,60:113:3942:60:2043:-132.058,0,-302.9 0/1:82:44,38:44:1531:38:1276:-90.4429,0,-113.395 0/1:77:61,16:61:2111:16:557:-27.2778,0,-167.076 dDocent_Contig_9941 116 . C T 214.029 . AB=0.37037;ABP=6.95112;AC=1;AF=0.125;AN=8;AO=10;CIGAR=1X;DP=63;DPB=63;DPRA=2.25;EPP=24.725;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=58.717;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=0.90566;PAO=0;PQA=0;PQR=0;PRO=0;QA=340;QR=1741;RO=53;RPL=0;RPP=24.725;RPPR=118.098;RPR=10;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=118.098;SRR=53;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:17,10:17:578:10:340:-22.8008,0,-44.0589 0/0:5:5,0:5:168:0:0:0,-1.50515,-15.451 0/0:24:24,0:24:765:0:0:0,-7.22472,-69.1465 0/0:7:7,0:7:230:0:0:0,-2.10721,-21.0219 dDocent_Contig_9944 25 . G T 36.5302 . AB=0.15;ABP=24.2907;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=126;DPB=126;DPRA=0.575;EPP=11.6962;EPPR=267.93;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=162;QR=4900;RO=122;RPL=0;RPP=11.6962;RPPR=267.93;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=122;SRP=267.93;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:30:30,0:30:1215:0:0:0,-9.0309,-109.621 0/0:50:50,0:50:2001:0:0:0,-15.0515,-180.271 0/0:26:25,1:25:1017:1:40:0,-3.8311,-87.826 0/1:20:17,3:17:667:3:122:-5.35189,0,-54.3344 dDocent_Contig_9945 12 . T C 94.8382 . AB=0.217391;ABP=18.9659;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=110;DPB=110;DPRA=1.33333;EPP=18.2106;EPPR=226.672;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.951456;PAO=0;PQA=0;PQR=0;PRO=0;QA=278;QR=3857;RO=103;RPL=0;RPP=18.2106;RPPR=226.672;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=103;SRP=226.672;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:22:22,0:22:842:0:0:0,-6.62266,-76.0998 0/0:48:47,1:47:1774:1:41:0,-10.3549,-155.814 0/0:17:16,1:16:613:1:40:0,-1.12183,-51.5127 0/1:23:18,5:18:628:5:197:-11.1827,0,-49.9041 dDocent_Contig_9946 29 . T C 712.682 . AB=0.246032;ABP=73.6004;AC=3;AF=0.375;AN=8;AO=31;CIGAR=1X;DP=139;DPB=139;DPRA=3.23077;EPP=70.3259;EPPR=237.529;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1257;QR=4351;RO=108;RPL=0;RPP=70.3259;RPPR=237.529;RPR=31;RUN=1;SAF=31;SAP=70.3259;SAR=0;SRF=108;SRP=237.529;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:46:26,20:26:1051:20:810:-59.3686,0,-81.032 0/1:69:63,6:63:2539:6:245:-1.6584,0,-207.868 0/1:11:6,5:6:236:5:202:-15.2507,0,-18.2992 0/0:13:13,0:13:525:0:0:0,-3.91339,-47.5967 dDocent_Contig_9947 13 . C T 320.779 . AB=0.191919;ABP=84.627;AC=4;AF=0.5;AN=8;AO=19;CIGAR=1X;DP=99;DPB=99;DPRA=0;EPP=44.2683;EPPR=176.728;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=0;PAIREDR=0.9875;PAO=0;PQA=0;PQR=0;PRO=0;QA=751;QR=3066;RO=80;RPL=0;RPP=44.2683;RPPR=176.728;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=80;SRP=176.728;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:42:34,8:34:1299:8:320:-16.5244,0,-104.542 0/1:29:24,5:24:920:5:193:-9.00922,0,-74.3768 0/1:18:16,2:16:609:2:77:-1.88966,0,-49.7225 0/1:10:6,4:6:238:4:161:-11.8652,0,-18.7829 dDocent_Contig_9948 29 . T A 1941.87 . AB=0.575221;ABP=8.56389;AC=4;AF=0.5;AN=8;AO=65;CIGAR=1X;DP=113;DPB=113;DPRA=0;EPP=144.156;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.830769;PAIREDR=0.8125;PAO=0;PQA=0;PQR=0;PRO=0;QA=2603;QR=1869;RO=48;RPL=0;RPP=144.156;RPPR=107.241;RPR=65;RUN=1;SAF=65;SAP=144.156;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:37:10,27:10:392:27:1076:-85.9922,0,-24.4927 0/1:34:20,14:20:783:14:556:-40.1438,0,-60.5533 0/1:30:12,18:12:467:18:729:-56.9038,0,-33.3413 0/1:12:6,6:6:227:6:242:-18.5452,0,-17.1783 dDocent_Contig_9949 106 . N G 48.6629 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=4;CIGAR=8X1M7D2M1X2M2X2M1X3M1X;DP=4;DPB=3.1;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=14;MQMR=0;NS=1;NUMALT=1;ODDS=7.37776;PAIRED=0;PAIREDR=0;PAO=1;PQA=35;PQR=0;PRO=0;QA=152;QR=0;RO=0;RPL=0;RPP=11.6962;RPPR=0;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. 1|1:4:0,4:0:0:4:152:-4.86601,-1.20412,0 .:.:.:.:.:.:.:. dDocent_Contig_9950 13 . G A 531.855 . AB=0.257426;ABP=54.6311;AC=3;AF=0.375;AN=8;AO=26;CIGAR=1X;DP=131;DPB=131;DPRA=1.12222;EPP=59.4686;EPPR=231.015;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.884615;PAIREDR=0.780952;PAO=0;PQA=0;PQR=0;PRO=0;QA=977;QR=3947;RO=105;RPL=0;RPP=59.4686;RPPR=231.015;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=105;SRP=231.015;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:30:30,0:30:1109:0:0:0,-9.0309,-100.111 0/1:41:34,7:34:1289:7:255:-10.9584,0,-103.96 0/1:50:34,16:34:1287:16:608:-40.0031,0,-101.065 0/1:10:7,3:7:262:3:114:-7.62192,0,-20.9283 dDocent_Contig_9954 118 . G T 310.751 . AB=0.25;ABP=26.8965;AC=4;AF=0.5;AN=8;AO=15;CIGAR=2X3M1X;DP=48;DPB=48;DPRA=0;EPP=35.5824;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=506;QR=1119;RO=31;RPL=0;RPP=35.5824;RPPR=70.3259;RPR=15;RUN=1;SAF=0;SAP=35.5824;SAR=15;SRF=0;SRP=70.3259;SRR=31;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:15:10,5,0:10:369:5,0:160,0:-10.2004,0,-29.0442,-13.2107,-30.5494,-43.4239 0|0:10:7,1,2:7:255:1,2:34,66:-3.22248,-2.56837,-23.1242,0,-18.0965,-20.2494 0|1:19:14,5,0:14:495:5,0:173,0:-10.1906,0,-39.1617,-14.405,-40.6669,-54.7241 1|1:4:0,4,0:0:0:4,0:139,0:-12.8526,-1.20412,0,-12.8526,-1.20412,-12.8526 dDocent_Contig_9955 8 . G T 1485.83 . AB=0.329787;ABP=50.3207;AC=4;AF=0.5;AN=8;AO=62;CIGAR=1X1M3X1M;DP=188;DPB=170;DPRA=0;EPP=137.642;EPPR=217.986;GTI=0;LEN=1;MEANALT=1.75;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=2.77556e-17;PAIRED=0.935484;PAIREDR=0.969697;PAO=0;PQA=0;PQR=0;PRO=0;QA=2268;QR=3777;RO=99;RPL=0;RPP=137.642;RPPR=217.986;RPR=62;RUN=1;SAF=62;SAP=137.642;SAR=0;SRF=99;SRP=217.986;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:35:27,4,4:27:1017:4,4:146,143:-3.80479,0,-82.1456,-0.276432,-71.6922,-82.4155 0|1:40:25,15,0:25:964:15,0:545,0:-37.3453,0,-75.0332,-44.8711,-79.5487,-124.048 0|1:71:25,33,13:25:957:33,13:1207,473:-91.1108,0,-68.6151,-60.0032,-39.9217,-134.634 0|1:42:22,10,10:22:839:10,10:370,360:-23.6525,0,-65.8335,-0.906277,-39.4766,-66.7329 dDocent_Contig_9957 22 . G A 568.847 . AB=0.318841;ABP=22.6794;AC=1;AF=0.125;AN=8;AO=22;CIGAR=1X;DP=137;DPB=137;DPRA=3.04412;EPP=50.7827;EPPR=252.73;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=875;QR=4575;RO=115;RPL=0;RPP=50.7827;RPPR=252.73;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=115;SRP=252.73;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:69:47,22:47:1864:22:875:-58.2826,0,-147.195 0/0:49:49,0:49:1945:0:0:0,-14.7505,-175.249 0/0:13:13,0:13:523:0:0:0,-3.91339,-47.4164 0/0:6:6,0:6:243:0:0:0,-1.80618,-22.248 dDocent_Contig_9958 98 . N T 60.7946 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=64;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:64:-6.07837,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_9959 75 . T G 429.022 . AB=0.434783;ABP=4.70971;AC=4;AF=0.5;AN=8;AO=20;CIGAR=1X;DP=46;DPB=46;DPRA=0;EPP=46.4397;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=683;QR=938;RO=26;RPL=20;RPP=46.4397;RPPR=59.4686;RPR=0;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:9,1:9:315:1:37:-0.687529,0,-25.675 0/1:18:9,9:9:329:9:303:-22.173,0,-24.5407 0/1:8:3,5:3:111:5:160:-12.3054,0,-7.94568 0/1:10:5,5:5:183:5:183:-13.8165,0,-13.8165 dDocent_Contig_9960 32 . A G 140.425 . AB=0.130435;ABP=139.435;AC=3;AF=0.375;AN=8;AO=16;CIGAR=1X;DP=129;DPB=129;DPRA=0;EPP=37.7539;EPPR=248.387;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=629;QR=4460;RO=113;RPL=0;RPP=37.7539;RPPR=248.387;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=113;SRP=248.387;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:48:43,5:43:1674:5:189:-2.92021,0,-136.456 0/1:56:48,8:48:1898:8:317:-12.0378,0,-154.179 0/0:14:13,1:13:523:1:41:0,-0.119853,-43.3224 0/1:11:9,2:9:365:2:82:-4.46835,0,-29.9037 dDocent_Contig_9961 103 . N C 156.003 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=5;CIGAR=5X;DP=5;DPB=5;DPRA=0;EPP=13.8677;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=51;MQMR=0;NS=1;NUMALT=1;ODDS=8.07091;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=170;QR=0;RO=0;RPL=0;RPP=13.8677;RPPR=0;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. 1|1:5:0,5:0:0:5:170:-15.6001,-1.50515,0 .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. dDocent_Contig_9962 12 . G A 864.468 . AB=0.392405;ABP=10.954;AC=2;AF=0.25;AN=8;AO=34;CIGAR=1X;DP=194;DPB=194;DPRA=0;EPP=76.8404;EPPR=350.446;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1368;QR=6307;RO=160;RPL=0;RPP=76.8404;RPPR=350.446;RPR=34;RUN=1;SAF=34;SAP=76.8404;SAR=0;SRF=160;SRP=350.446;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:48:22,26:22:867:26:1050:-80.3416,0,-63.8944 0/0:38:37,1:37:1461:1:32:0,-8.23983,-128.541 0/0:77:75,2:75:2999:2:81:0,-15.4936,-262.315 0/1:31:26,5:26:980:5:205:-9.50308,0,-79.1555 dDocent_Contig_9964 14 . G A 2687.47 . AB=0.570552;ABP=10.0576;AC=4;AF=0.5;AN=8;AO=93;CIGAR=1X3M2X3M1X2M2X1M1X3M1X;DP=163;DPB=163;DPRA=0;EPP=204.957;EPPR=131.127;GTI=0;LEN=1;MEANALT=2.25;MQM=58.3226;MQMR=60;NS=4;NUMALT=2;ODDS=1.38778e-17;PAIRED=0.956989;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3646;QR=2280;RO=59;RPL=0;RPP=204.957;RPPR=131.127;RPR=93;RUN=1;SAF=93;SAP=204.957;SAR=0;SRF=59;SRP=131.127;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:33:12,0,20:12:458:0,20:0,784:-60.8415,-64.4539,-102.024,0,-37.5478,-31.5272 0|1:66:20,0,43:20:769:0,43:0,1681:-127.475,-133.495,-196.626,0,-63.1192,-50.1749 0|1:47:22,5,18:22:857:5,18:199,706:-49.8446,-43.5057,-112.442,0,-57.5183,-65.0617 0|1:17:5,0,12:5:196:0,12:0,475:-37.9846,-39.4897,-55.6064,0,-16.5094,-12.897 dDocent_Contig_9965 41 . T A 695.626 . AB=0.341463;ABP=20.9117;AC=3;AF=0.375;AN=8;AO=28;CIGAR=2X;DP=109;DPB=109;DPRA=1.01235;EPP=63.8115;EPPR=172.385;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.74359;PAO=0;PQA=0;PQR=0;PRO=0;QA=1093;QR=3097;RO=78;RPL=0;RPP=63.8115;RPPR=172.385;RPR=28;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=78;SRP=172.385;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:27:26,0,1:26:1042:0,1:0,40:0,-7.82678,-93.6757,-4.13213,-90.3806,-90.0796 0|1:37:29,8,0:29:1155:8,0:299,0:-16.1197,0,-93.0918,-24.8495,-95.5001,-119.971 0|1:26:9,17,0:9:347:17,0:673,0:-53.076,0,-23.7571,-55.7853,-28.8746,-84.2712 0|1:19:14,3,2:14:553:3,2:121,79:-5.76479,0,-44.598,-3.48192,-39.0005,-48.3742 dDocent_Contig_9966 35 . A T 441.287 . AB=0.305085;ABP=22.4799;AC=3;AF=0.375;AN=8;AO=18;CIGAR=1X;DP=84;DPB=84;DPRA=0.786667;EPP=42.0968;EPPR=146.327;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=735;QR=2615;RO=66;RPL=0;RPP=42.0968;RPPR=146.327;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=66;SRP=146.327;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:24,7:24:958:7:286:-16.7829,0,-77.1908 0/0:25:25,0:25:979:0:0:0,-7.52575,-88.4043 0/1:6:3,3:3:119:3:122:-9.56631,0,-9.289 0/1:22:14,8:14:559:8:327:-23.1774,0,-44.0298 dDocent_Contig_9967 170 . C A 89.2229 . AB=0.225806;ABP=23.254;AC=3;AF=0.375;AN=8;AO=7;CIGAR=1X;DP=40;DPB=40;DPRA=1.14815;EPP=18.2106;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=236;QR=1313;RO=33;RPL=7;RPP=18.2106;RPPR=74.6689;RPR=0;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=74.6689;SRR=33;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:10,3:10:395:3:98:-5.22934,0,-31.9938 0/1:9:8,1:8:322:1:33:-0.589865,0,-26.6392 0/0:9:9,0:9:355:0:0:0,-2.70927,-32.3085 0/1:9:6,3:6:241:3:105:-7.08662,0,-19.357 dDocent_Contig_9968 1 . N G 107.243 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=115;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:115:-10.7238,-0.90309,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_9969 29 . C T 110.521 . AB=0.25;ABP=13.8677;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=56;DPB=56;DPRA=1.66667;EPP=13.8677;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=201;QR=2051;RO=51;RPL=0;RPP=13.8677;RPPR=113.755;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:15,5:15:609:5:201:-12.4499,0,-49.1265 0/0:15:15,0:15:600:0:0:0,-4.51545,-54.3388 0/0:18:18,0:18:720:0:0:0,-5.41854,-65.1229 0/0:3:3,0:3:122:0:0:0,-0.90309,-11.3725 dDocent_Contig_9970 125 . A G 38.8283 . AB=0.214286;ABP=12.937;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=54;DPB=54;DPRA=1.05;EPP=9.52472;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=105;QR=1314;RO=51;RPL=0;RPP=9.52472;RPPR=113.755;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=113.755;SRR=51;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:12:12,0:12:298:0:0:0,-3.61236,-27.0656 0/0:12:12,0:12:309:0:0:0,-3.61236,-28.064 0/1:14:11,3:11:297:3:105:-5.58174,0,-22.7821 0/0:16:16,0:16:410:0:0:0,-4.81648,-37.1516 dDocent_Contig_9971 35 . T G 479.492 . AB=0.283784;ABP=33.0588;AC=3;AF=0.375;AN=8;AO=21;CIGAR=1X;DP=82;DPB=82;DPRA=3.08333;EPP=48.6112;EPPR=135.47;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=828;QR=2434;RO=61;RPL=0;RPP=48.6112;RPPR=135.47;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=61;SRP=135.47;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:37:30,7:30:1197:7:273:-13.7942,0,-96.8709 0/1:22:11,11:11:444:11:434:-32.7882,0,-33.6929 0/1:15:12,3:12:478:3:121:-6.76475,0,-38.8541 0/0:8:8,0:8:315:0:0:0,-2.40824,-28.7125 dDocent_Contig_9973 9 . G A 1012.59 . AB=0.367347;ABP=25.4784;AC=4;AF=0.5;AN=8;AO=54;CIGAR=1X;DP=147;DPB=147;DPRA=0;EPP=120.27;EPPR=204.957;GTI=0;LEN=1;MEANALT=1;MQM=32.463;MQMR=52.6129;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.989247;PAO=0;PQA=0;PQR=0;PRO=0;QA=2059;QR=3551;RO=93;RPL=0;RPP=120.27;RPPR=204.957;RPR=54;RUN=1;SAF=54;SAP=120.27;SAR=0;SRF=93;SRP=204.957;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:16,8:16:618:8:310:-16.1112,0,-35.6832 0/1:53:27,26:27:1032:26:983:-55.3298,0,-73.8663 0/1:28:23,5:23:875:5:195:-6.30368,0,-63.406 0/1:42:27,15:27:1026:15:571:-30.9124,0,-79.0175 dDocent_Contig_9974 7 . A C 740.985 . AB=0.329897;ABP=27.389;AC=4;AF=0.5;AN=8;AO=32;CIGAR=1X;DP=97;DPB=97;DPRA=0;EPP=72.4974;EPPR=144.156;GTI=0;LEN=1;MEANALT=1;MQM=59.8438;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=0.96875;PAIREDR=0.892308;PAO=0;PQA=0;PQR=0;PRO=0;QA=1214;QR=2463;RO=65;RPL=0;RPP=72.4974;RPPR=144.156;RPR=32;RUN=1;SAF=32;SAP=72.4974;SAR=0;SRF=65;SRP=144.156;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:41:33,8:33:1246:8:302:-15.1949,0,-100.091 0/1:19:13,6:13:506:6:231:-15.4383,0,-40.1698 0/1:30:17,13:17:633:13:489:-35.3204,0,-48.2681 0/1:7:2,5:2:78:5:192:-15.5428,0,-5.29626 dDocent_Contig_9975 9 . G A 149.425 . AB=0.135417;ABP=113.846;AC=3;AF=0.375;AN=8;AO=13;CIGAR=2M1X6M1X9M;DP=128;DPB=127.368;DPRA=1;EPP=31.2394;EPPR=194.882;GTI=0;LEN=1;MEANALT=3.66667;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=1.38778e-17;PAIRED=1;PAIREDR=0.93;PAO=0;PQA=0;PQR=0;PRO=0;QA=499;QR=3868;RO=100;RPL=0;RPP=31.2394;RPPR=220.158;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=97;SRP=194.882;SRR=3;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:72:54,0,6,4:54:2080:0,6,4:0,229,154:-2.55194,-18.8076,-189.616,0,-170.828,-169.022,-6.15059,-176.971,-158.183,-175.767 0|1:8:3,2,3,0:3:119:2,3,0:78,117,0:-8.77149,-5.00928,-14.2066,0,-5.19429,-8.95386,-9.67458,-14.8086,-9.85695,-19.4873 0|0:32:31,0,0,0:31:1203:0,0,0:0,0,0:0,-9.33193,-108.149,-9.33193,-108.149,-108.149,-9.33193,-108.149,-108.149,-108.149 0|1:16:12,0,4,0:12:466:0,4,0:0,153,0:-8.98756,-12.5999,-50.9084,0,-38.352,-37.1479,-12.5999,-50.9084,-38.352,-50.9084 dDocent_Contig_9976 74 . C T 1412.16 . AB=0.377483;ABP=22.6974;AC=4;AF=0.5;AN=8;AO=57;CIGAR=1X;DP=151;DPB=151;DPRA=0;EPP=126.784;EPPR=204.957;GTI=0;LEN=1;MEANALT=1.25;MQM=59.5789;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.964912;PAIREDR=0.935484;PAO=0;PQA=0;PQR=0;PRO=0;QA=2139;QR=3551;RO=93;RPL=57;RPP=126.784;RPPR=204.957;RPR=0;RUN=1;SAF=57;SAP=126.784;SAR=0;SRF=93;SRP=204.957;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:37:32,5:32:1232:5:188:-6.14588,0,-100.035 0/1:42:20,22:20:767:22:850:-64.1784,0,-56.7144 0/1:43:21,21:21:809:21:757:-55.7024,0,-60.3985 0/1:29:20,9:20:743:9:344:-22.5876,0,-58.4599 dDocent_Contig_9978 7 . A T 1067.68 . AB=0.388889;ABP=14.5915;AC=4;AF=0.5;AN=8;AO=42;CIGAR=1X;DP=108;DPB=108;DPRA=0;EPP=94.2121;EPPR=146.327;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.954545;PAO=0;PQA=0;PQR=0;PRO=0;QA=1614;QR=2458;RO=66;RPL=0;RPP=94.2121;RPPR=146.327;RPR=42;RUN=1;SAF=42;SAP=94.2121;SAR=0;SRF=66;SRP=146.327;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:40:24,16:24:904:16:619:-44.0091,0,-69.6326 0/1:30:20,10:20:733:10:381:-25.613,0,-57.2592 0/1:23:11,12:11:410:12:460:-34.8258,0,-30.3223 0/1:15:11,4:11:411:4:154:-9.71814,0,-32.8205 dDocent_Contig_9981 8 . G A 971.912 . AB=0.330508;ABP=32.454;AC=2;AF=0.25;AN=8;AO=39;CIGAR=1X;DP=199;DPB=199;DPRA=1.45679;EPP=87.6977;EPPR=284.433;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=58.5625;NS=4;NUMALT=1;ODDS=0;PAIRED=0.948718;PAIREDR=0.93125;PAO=0;PQA=0;PQR=0;PRO=0;QA=1505;QR=6088;RO=160;RPL=0;RPP=87.6977;RPPR=350.446;RPR=39;RUN=1;SAF=39;SAP=87.6977;SAR=0;SRF=152;SRP=284.433;SRR=8;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:59:59,0:59:2263:0:0:0,-17.7608,-203.885 0/1:79:46,33:46:1747:33:1271:-90.8982,0,-129.913 0/1:39:33,6:33:1241:6:234:-9.69093,0,-96.8019 0/0:22:22,0:22:837:0:0:0,-6.62266,-73.7474 dDocent_Contig_9982 14 . G T 329.022 . AB=0.285714;ABP=22.5536;AC=2;AF=0.25;AN=8;AO=14;CIGAR=1X;DP=64;DPB=64;DPRA=3.26667;EPP=33.4109;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.64;NS=4;NUMALT=1;ODDS=0;PAIRED=0.428571;PAIREDR=0.64;PAO=0;PQA=0;PQR=0;PRO=0;QA=559;QR=1928;RO=50;RPL=0;RPP=33.4109;RPPR=111.584;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:20,9:20:776:9:362:-24.2147,0,-61.4227 0/1:20:15,5:15:588:5:197:-12.0854,0,-47.2354 0/0:7:7,0:7:268:0:0:0,-2.10721,-24.4816 0/0:8:8,0:8:296:0:0:0,-2.40824,-26.9884 dDocent_Contig_9984 61 . A T 1415.81 . AB=0.153846;ABP=16.5402;AC=2;AF=0.25;AN=8;AO=2;CIGAR=3M2I3M4D1M;DP=51;DPB=68.2727;DPRA=6.5;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=0;NS=4;NUMALT=4;ODDS=0;PAIRED=0.5;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=79;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:18:0,2,0,0,14:0:0:2,0,0,14:78,0,0,523:-49.3172,-42.9025,-42.3005,-49.3172,-42.9025,-49.3172,-49.3172,-42.9025,-49.3172,-49.3172,-6.46659,0,-6.46659,-6.46659,-2.25217 0|0:13:0,0,5,2,6:0:0:0,5,2,6:0,190,79,214:-33,-33,-33,-17.4135,-17.4135,-15.9084,-26.4948,-26.4948,-10.903,-25.8927,-15.5705,-15.5705,0,-9.0653,-13.7643 1|0:18:0,4,0,0,14:0:0:4,0,0,14:156,0,0,534:-57.0117,-44.1871,-42.983,-57.0117,-44.1871,-57.0117,-57.0117,-44.1871,-57.0117,-57.0117,-13.2123,0,-13.2123,-13.2123,-8.9979 0|0:2:0,0,0,0,2:0:0:0,0,0,2:0,0,0,80:-7.59179,-7.59179,-7.59179,-7.59179,-7.59179,-7.59179,-7.59179,-7.59179,-7.59179,-7.59179,-0.60206,-0.60206,-0.60206,-0.60206,0 dDocent_Contig_9985 53 . C T 474.255 . AB=0.435897;ABP=4.40227;AC=2;AF=0.25;AN=8;AO=17;CIGAR=1X;DP=50;DPB=50;DPRA=3.54545;EPP=39.9253;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=687;QR=1314;RO=33;RPL=17;RPP=39.9253;RPPR=74.6689;RPR=0;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:14,7:14:563:7:282:-19.4308,0,-44.6904 0/1:18:8,10:8:319:10:405:-31.3921,0,-23.6578 0/0:10:10,0:10:396:0:0:0,-3.0103,-35.9987 0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827 dDocent_Contig_9986 94 . C A 96.9955 . AB=0.3;ABP=9.95901;AC=2;AF=0.25;AN=8;AO=7;CIGAR=1X;DP=42;DPB=42;DPRA=1.66667;EPP=18.2106;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.714286;PAIREDR=0.828571;PAO=0;PQA=0;PQR=0;PRO=0;QA=237;QR=1168;RO=35;RPL=7;RPP=18.2106;RPPR=79.0118;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:15:14,1:14:474:1:30:0,-1.51588,-39.9845 0/1:5:4,1:4:106:1:35:-1.99348,0,-8.29717 0/1:15:10,5:10:350:5:172:-11.3029,0,-27.3221 0/0:7:7,0:7:238:0:0:0,-2.10721,-21.7524 dDocent_Contig_9987 41 . G T 1445.04 . AB=0.12;ABP=97.0785;AC=0;AF=0;AN=8;AO=9;CIGAR=2X6M1X;DP=118;DPB=118;DPRA=0;EPP=22.5536;EPPR=105.07;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=4;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=337;QR=1843;RO=47;RPL=0;RPP=22.5536;RPPR=105.07;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:43:22,0,6,0,15:22:856:0,6,0,15:0,243,0,610:-43.6945,-50.3172,-120.652,-30.2802,-100.613,-98.8068,-50.3172,-120.652,-100.613,-120.652,0,-70.3307,-50.2899,-70.3307,-65.8153 0|0:41:11,1,0,6,21:11:436:1,0,6,21:37,0,227,826:-64.6451,-65.0357,-100.625,-67.9564,-100.926,-103.847,-49.3494,-82.3196,-85.2403,-83.4341,0,-32.9861,-35.9065,-17.2991,-29.5849 0|0:23:11,0,0,1,11:11:439:0,0,1,11:0,0,33,419:-31.0942,-34.4056,-70.5727,-34.4056,-70.5727,-70.5727,-31.7416,-67.9071,-67.9071,-67.6061,0,-36.2195,-36.2195,-33.557,-32.9082 0|0:11:3,2,0,2,4:3:112:2,0,2,4:78,0,77,162:-12.4676,-7.2319,-15.7919,-13.3707,-16.3939,-22.5358,-7.05079,-10.073,-16.2139,-15.6119,0,-3.02371,-9.16746,-2.84195,-7.96334 dDocent_Contig_9988 17 . G T 1434.23 . AB=0.576471;ABP=7.3277;AC=3;AF=0.375;AN=8;AO=50;CIGAR=1X;DP=100;DPB=100;DPRA=0;EPP=111.584;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.98;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1967;QR=2003;RO=50;RPL=0;RPP=111.584;RPPR=111.584;RPR=50;RUN=1;SAF=50;SAP=111.584;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:53:19,34:19:765:34:1353:-106.08,0,-53.2165 0/1:24:15,9:15:613:9:342:-23.907,0,-48.2821 0/0:15:14,1:14:549:1:40:0,-0.519771,-45.7548 0/1:8:2,6:2:76:6:232:-18.8333,0,-4.80602 dDocent_Contig_9989 8 . G A 470.852 . AB=0.323077;ABP=20.6827;AC=4;AF=0.5;AN=8;AO=21;CIGAR=1X;DP=65;DPB=65;DPRA=0;EPP=48.6112;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.954545;PAO=0;PQA=0;PQR=0;PRO=0;QA=806;QR=1625;RO=44;RPL=0;RPP=48.6112;RPPR=98.5551;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:7,12:7:269:12:464:-36.3921,0,-18.855 0/1:16:14,2:14:520:2:76:-2.39819,0,-42.3212 0/1:16:13,3:13:471:3:115:-5.90841,0,-37.9037 0/1:14:10,4:10:365:4:151:-9.74312,0,-28.9783 dDocent_Contig_9991 8 . G A 474.778 . AB=0.363636;ABP=4.78696;AC=3;AF=0.375;AN=8;AO=16;CIGAR=1X;DP=49;DPB=49;DPRA=0.96;EPP=37.7539;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.909091;PAO=0;PQA=0;PQR=0;PRO=0;QA=614;QR=1271;RO=33;RPL=0;RPP=37.7539;RPPR=74.6689;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:8:8,0:8:310:0:0:0,-2.40824,-28.2636 0/1:11:7,4:7:269:4:154:-10.9221,0,-21.2634 1/1:13:1,12:1:38:12:460:-37.9528,-0.116121,0 0/0:17:17,0:17:654:0:0:0,-5.11751,-59.1967 dDocent_Contig_9992 22 . G C 2221.77 . AB=0.625;ABP=19.2963;AC=4;AF=0.5;AN=8;AO=75;CIGAR=1X;DP=120;DPB=120;DPRA=0;EPP=165.871;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.96;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2938;QR=1814;RO=45;RPL=0;RPP=165.871;RPPR=100.727;RPR=75;RUN=1;SAF=75;SAP=165.871;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:34:9,25:9:365:25:968:-77.1791,0,-22.9795 0/1:43:18,25:18:722:25:971:-74.7323,0,-52.361 0/1:30:10,20:10:401:20:795:-62.8334,0,-27.4186 0/1:13:8,5:8:326:5:204:-14.8306,0,-25.7965 dDocent_Contig_9993 162 . A G 65.7072 . AB=0.3;ABP=6.48466;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=56;DPB=56;DPRA=0.652174;EPP=9.52472;EPPR=71.8828;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=121;QR=2083;RO=53;RPL=3;RPP=9.52472;RPPR=71.8828;RPR=0;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=118.098;SRR=53;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:25:25,0:25:978:0:0:0,-7.52575,-88.3157 0/1:10:7,3:7:278:3:121:-8.26969,0,-22.3779 0/0:14:14,0:14:542:0:0:0,-4.21442,-49.119 0/0:7:7,0:7:285:0:0:0,-2.10721,-26.0244 dDocent_Contig_9994 162 . T A 148.517 . AB=0.15873;ABP=66.7413;AC=2;AF=0.25;AN=8;AO=10;CIGAR=1X;DP=136;DPB=136;DPRA=0.863014;EPP=24.725;EPPR=251.179;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=405;QR=4835;RO=126;RPL=10;RPP=24.725;RPPR=251.179;RPR=0;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=276.616;SRR=126;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:50:50,0:50:1894:0:0:0,-15.0515,-170.669 0/1:27:22,5:22:856:5:200:-10.2517,0,-69.2218 0/1:36:31,5:31:1211:5:205:-7.99793,0,-98.4351 0/0:23:23,0:23:874:0:0:0,-6.92369,-78.9616 dDocent_Contig_9996 53 . C T 397.967 . AB=0.297872;ABP=19.6891;AC=5;AF=0.625;AN=8;AO=16;CIGAR=1X1M1X;DP=49;DPB=49;DPRA=0;EPP=37.7539;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.875;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=642;QR=1299;RO=33;RPL=16;RPP=37.7539;RPPR=74.6689;RPR=0;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:16:14,2:14:556:2:81:-2.86925,0,-45.5681 0|1:15:13,2:13:518:2:78:-2.88785,0,-42.4529 0|1:16:6,10:6:225:10:402:-31.7238,0,-15.7922 1|1:2:0,2:0:0:2:81:-7.68573,-0.60206,0 dDocent_Contig_9997 13 . G A 1841.62 . AB=0.217647;ABP=120.73;AC=2;AF=0.25;AN=8;AO=37;CIGAR=1X3M1X;DP=170;DPB=170;DPRA=0;EPP=83.3548;EPPR=172.385;GTI=0;LEN=1;MEANALT=2.75;MQM=59.8108;MQMR=60;NS=4;NUMALT=4;ODDS=2.77556e-17;PAIRED=0;PAIREDR=0.948718;PAO=0;PQA=0;PQR=0;PRO=0;QA=1448;QR=2996;RO=78;RPL=0;RPP=83.3548;RPPR=172.385;RPR=37;RUN=1;SAF=37;SAP=83.3548;SAR=0;SRF=78;SRP=172.385;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:34:5,9,6,0,14:5:192:9,6,0,14:336,229,0,541:-54.6694,-28.6712,-41.7229,-37.3913,-25.65,-51.3468,-56.1745,-44.4322,-53.153,-71.9361,-11.7397,0,-8.71829,-27.5027,-23.2883 0|1:52:22,0,24,4,2:22:840:0,24,4,2:0,944,153,81:-71.0303,-77.6529,-146.566,0,-68.911,-61.6863,-65.0994,-134.011,-56.3562,-132.807,-70.9729,-139.886,-62.2302,-127.331,-139.284 0|0:51:25,0,6,1,19:25:958:0,6,1,19:0,235,35,750:-54.1887,-61.7145,-140.333,-42.4068,-121.024,-119.218,-58.8684,-137.486,-118.178,-137.185,0,-78.621,-59.3113,-75.7743,-72.9014 0|0:33:26,0,1,0,6:26:1006:0,1,0,6:0,40,0,237:-11.6717,-19.4985,-102.126,-16.2027,-98.8305,-98.5294,-19.4985,-102.126,-98.8305,-102.126,0,-82.6218,-79.3263,-82.6218,-80.8156 dDocent_Contig_9998 130 . T A 402.887 . AB=0.365385;ABP=11.1951;AC=3;AF=0.375;AN=8;AO=19;CIGAR=1X;DP=98;DPB=98;DPRA=0.376812;EPP=44.2683;EPPR=174.557;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=670;QR=2723;RO=79;RPL=0;RPP=44.2683;RPPR=174.557;RPR=19;RUN=1;SAF=0;SAP=44.2683;SAR=19;SRF=0;SRP=174.557;SRR=79;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:46:46,0:46:1588:0:0:0,-13.8474,-143.212 0/1:35:22,13:22:760:13:455:-30.7468,0,-58.1836 0/1:6:3,3:3:96:3:107:-8.17599,0,-7.1511 0/1:11:8,3:8:279:3:108:-6.76384,0,-22.1377 dDocent_Contig_9999 62 . T G 447.678 . AB=0.181818;ABP=12.6832;AC=3;AF=0.375;AN=8;AO=15;CIGAR=2X;DP=52;DPB=52;DPRA=0.925926;EPP=35.5824;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=587;QR=1476;RO=37;RPL=15;RPP=35.5824;RPPR=83.3548;RPR=0;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:10:10,0:10:392:0:0:0,-3.0103,-35.6366 0|0:17:17,0:17:680:0:0:0,-5.11751,-61.5305 0|1:11:9,2:9:363:2:81:-4.3744,0,-29.7233 1|1:14:1,13:1:41:13:506:-41.79,-0.119853,0 dDocent_Contig_10001 64 . T C 655.351 . AB=0.342105;ABP=19.4678;AC=4;AF=0.5;AN=8;AO=26;CIGAR=1X;DP=76;DPB=76;DPRA=0;EPP=59.4686;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.5;PAIREDR=0.66;PAO=0;PQA=0;PQR=0;PRO=0;QA=1026;QR=1935;RO=50;RPL=26;RPP=59.4686;RPPR=111.584;RPR=0;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:21,2:21:800:2:81:-0.762044,0,-65.3751 0/1:22:4,18:4:150:18:709:-57.5149,0,-7.239 0/1:22:17,5:17:673:5:196:-11.3916,0,-54.2757 0/1:9:8,1:8:312:1:40:-1.28641,0,-25.7308 dDocent_Contig_10003 58 . G A 278.591 . AB=0.168067;ABP=116.894;AC=2;AF=0.25;AN=8;AO=23;CIGAR=1X1M1X;DP=214;DPB=214;DPRA=0;EPP=52.9542;EPPR=409.076;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.994652;PAO=0;PQA=0;PQR=0;PRO=0;QA=853;QR=7247;RO=187;RPL=23;RPP=52.9542;RPPR=409.076;RPR=0;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=187;SRP=409.076;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:41:37,4:37:1400:4:158:-2.25825,0,-113.928 0|0:72:67,2:67:2639:2:80:0,-13.5642,-230.092 0|1:78:61,16:61:2348:16:580:-28.9427,0,-187.917 0|0:23:22,1:22:860:1:35:0,-3.42506,-74.2176 dDocent_Contig_10004 8 . G A 180.918 . AB=0.236842;ABP=25.8679;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X;DP=129;DPB=129;DPRA=1.25275;EPP=22.5536;EPPR=244.336;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=59.1933;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.915966;PAO=0;PQA=0;PQR=0;PRO=0;QA=344;QR=4526;RO=119;RPL=0;RPP=22.5536;RPPR=261.416;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=117;SRP=244.336;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:52:52,0:52:1984:0:0:0,-15.6536,-178.589 0/1:38:28,9:28:1058:9:344:-19.7907,0,-83.5748 0/0:33:33,0:33:1260:0:0:0,-9.93399,-113.685 0/0:6:6,0:6:224:0:0:0,-1.80618,-20.5187 dDocent_Contig_10005 95 . A G 311.692 . AB=0;ABP=0;AC=2;AF=0.25;AN=8;AO=14;CIGAR=1X;DP=76;DPB=76;DPRA=1.71429;EPP=33.4109;EPPR=137.642;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=455;QR=2101;RO=62;RPL=14;RPP=33.4109;RPPR=137.642;RPR=0;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:10:0,10:0:0:10:336:-30.5667,-3.0103,0 0/0:38:34,4:34:1144:4:119:0,-0.434534,-92.2556 0/0:12:12,0:12:402:0:0:0,-3.61236,-36.5029 0/0:16:16,0:16:555:0:0:0,-4.81648,-50.2781 dDocent_Contig_10006 112 . C T 747.297 . AB=0.492537;ABP=3.04271;AC=4;AF=0.5;AN=8;AO=33;CIGAR=1X;DP=67;DPB=67;DPRA=0;EPP=74.6689;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1122;QR=1181;RO=34;RPL=0;RPP=74.6689;RPPR=76.8404;RPR=33;RUN=1;SAF=0;SAP=74.6689;SAR=33;SRF=0;SRP=76.8404;SRR=34;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:18,8:18:623:8:274:-17.1671,0,-48.5685 0/1:17:6,11:6:209:11:383:-29.6875,0,-14.0335 0/1:11:3,8:3:105:8:270:-21.3177,0,-6.48483 0/1:13:7,6:7:244:6:195:-13.9553,0,-18.3867 dDocent_Contig_10008 54 . A G 601.051 . AB=0.315789;ABP=25.4108;AC=2;AF=0.25;AN=8;AO=24;CIGAR=1X;DP=98;DPB=98;DPRA=3.45455;EPP=55.1256;EPPR=163.699;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=952;QR=2879;RO=74;RPL=24;RPP=55.1256;RPPR=163.699;RPR=0;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=74;SRP=163.699;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:47:32,15:32:1254:15:594:-39.6502,0,-98.9871 0/1:29:20,9:20:793:9:358:-23.8528,0,-62.9556 0/0:17:17,0:17:651:0:0:0,-5.11751,-58.9158 0/0:5:5,0:5:181:0:0:0,-1.50515,-16.6359 dDocent_Contig_10010 168 . C T 1273.97 . AB=0.309859;ABP=47.6019;AC=5;AF=0.625;AN=8;AO=49;CIGAR=1X;DP=147;DPB=147;DPRA=0;EPP=109.412;EPPR=215.815;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1935;QR=3832;RO=98;RPL=49;RPP=109.412;RPPR=215.815;RPR=0;RUN=1;SAF=0;SAP=109.412;SAR=49;SRF=0;SRP=215.815;SRR=98;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:65:40,25:40:1568:25:976:-68.5673,0,-121.785 0/1:42:36,6:36:1398:6:238:-9.15059,0,-113.428 1/1:5:0,5:0:0:5:197:-18.1055,-1.50515,0 0/1:35:22,13:22:866:13:524:-36.9714,0,-67.7078 dDocent_Contig_10011 16 . A G 112.787 . AB=0.666667;ABP=4.45795;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=38;DPB=38;DPRA=0.5625;EPP=11.6962;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=160;QR=1349;RO=34;RPL=0;RPP=11.6962;RPPR=76.8404;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:13:13,0:13:518:0:0:0,-3.91339,-46.9665 0/0:11:11,0:11:436:0:0:0,-3.31133,-39.5924 0/0:8:8,0:8:315:0:0:0,-2.40824,-28.7132 0/1:6:2,4:2:80:4:160:-12.9776,0,-5.78561 dDocent_Contig_10012 17 . G A 138.398 . AB=0.05;ABP=73.366;AC=0;AF=0;AN=8;AO=2;CIGAR=8M1X6M;DP=106;DPB=107.267;DPRA=0;EPP=7.35324;EPPR=168.042;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=4;NUMALT=5;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=80;QR=2964;RO=76;RPL=0;RPP=7.35324;RPPR=168.042;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=76;SRP=168.042;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:40:28,3,0,5,2,2:28:1085:3,0,5,2,2:119,0,180,72,80:-6.3049,-14.0944,-102.337,-14.7337,-103.24,-103.932,0,-88.5585,-89.2471,-87.7419,-8.846,-97.3671,-98.0581,-83.3729,-97.456,-8.12195,-96.6488,-97.3399,-82.6544,-91.4656,-96.7378 0|0:30:25,1,0,3,0,0:25:983:1,0,3,0,0:39,0,114,0,0:-1.91362,-9.26549,-89.8302,-9.43937,-90.1313,-90.359,0,-80.7832,-81.0097,-80.1066,-9.43937,-90.1313,-90.359,-81.0097,-90.359,-9.43937,-90.1313,-90.359,-81.0097,-90.359,-90.359 0|0:24:19,1,3,0,1,0:19:739:1,3,0,1,0:40,121,0,38,0:-4.36448,-9.91261,-70.3339,0,-60.6588,-59.9789,-10.084,-70.6349,-60.882,-70.86,-6.95502,-67.5189,-57.7651,-67.7434,-67.4423,-10.084,-70.6349,-60.882,-70.86,-67.7434,-70.86 0|0:12:4,3,2,3,0,0:4:157:3,2,3,0,0:119,79,117,0,0:-8.48695,-9.09891,-21.1086,-3.14803,-15.5103,-15.5254,0,-12.3951,-6.46791,-12.0976,-9.69107,-22.0117,-16.1275,-13.0007,-22.6452,-9.69107,-22.0117,-16.1275,-13.0007,-22.6452,-22.6452 dDocent_Contig_10014 107 . N T 104.487 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=105;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:70:-6.6474,-0.60206,0 1/1:1:0,1:0:0:1:35:-3.49863,-0.30103,0 ./.:.:.:.:.:.:.:. dDocent_Contig_10015 10 . T A 1295.43 . AB=0.661538;ABP=17.7429;AC=4;AF=0.5;AN=8;AO=43;CIGAR=1X;DP=65;DPB=65;DPRA=0;EPP=96.3836;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1723;QR=885;RO=22;RPL=0;RPP=96.3836;RPPR=50.7827;RPR=43;RUN=1;SAF=43;SAP=96.3836;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:32:8,24:8:323:24:964:-77.4276,0,-19.806 0/1:14:7,7:7:285:7:277:-21.0819,0,-21.81 0/1:15:6,9:6:237:9:361:-28.3386,0,-17.1862 0/1:4:1,3:1:40:3:121:-10.0759,0,-2.79156 dDocent_Contig_10017 19 . A G 3987.36 . AB=0.745665;ABP=93.6975;AC=4;AF=0.5;AN=8;AO=129;CIGAR=1X;DP=173;DPB=173;DPRA=0;EPP=283.13;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5079;QR=1708;RO=44;RPL=0;RPP=283.13;RPPR=98.5551;RPR=129;RUN=1;SAF=129;SAP=283.13;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:6,17:6:213:17:666:-53.3441,0,-12.5795 0/1:62:25,37:25:988:37:1459:-112.899,0,-70.5539 0/1:41:4,37:4:163:37:1483:-121.377,0,-2.7162 0/1:47:9,38:9:344:38:1471:-118.493,0,-17.1562 dDocent_Contig_10018 12 . C T 3051.88 . 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T C 41.5896 . AB=0.121212;ABP=44.1367;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X2M1X;DP=67;DPB=67;DPRA=2.2;EPP=11.6962;EPPR=133.299;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=3.46945e-18;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=155;QR=2413;RO=60;RPL=0;RPP=11.6962;RPPR=133.299;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:33:29,0,4:29:1159:0,4:0,155:-4.39047,-13.1203,-108.594,0,-95.8621,-94.658 0|0:15:15,0,0:15:609:0,0:0,0:0,-4.51545,-55.148,-4.51545,-55.148,-55.148 0|0:16:14,2,0:14:566:2,0:70,0:-1.8168,0,-46.4667,-6.03122,-47.0687,-52.744 0|0:3:2,1,0:2:79:1,0:40,0:-3.09259,0,-6.59454,-3.69465,-6.89557,-10.1923 dDocent_Contig_10021 16 . T G 47.4973 . AB=0.142857;ABP=34.0313;AC=1;AF=0.125;AN=8;AO=10;CIGAR=1X;DP=159;DPB=159;DPRA=2.45614;EPP=24.725;EPPR=326.56;GTI=0;LEN=1;MEANALT=1;MQM=56.6;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=399;QR=5988;RO=149;RPL=0;RPP=24.725;RPPR=326.56;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=149;SRP=326.56;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:19:19,0:19:768:0:0:0,-5.71957,-69.4387 0/0:63:60,3:60:2385:3:116:0,-8.15128,-203.986 0/0:49:46,3:46:1871:3:121:0,-3.47365,-157.308 0/1:28:24,4:24:964:4:162:-6.4487,0,-78.6251 dDocent_Contig_10022 24 . G A 1682.87 . AB=0.522523;ABP=3.49937;AC=4;AF=0.5;AN=8;AO=58;CIGAR=1X;DP=111;DPB=111;DPRA=0;EPP=128.956;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.962264;PAO=0;PQA=0;PQR=0;PRO=0;QA=2308;QR=2079;RO=53;RPL=0;RPP=128.956;RPPR=118.098;RPR=58;RUN=1;SAF=58;SAP=128.956;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:41:4,37:4:163:37:1470:-120.204,0,-2.7162 0/1:33:21,12:21:819:12:483:-33.8872,0,-64.0788 0/1:28:22,6:22:852:6:233:-12.9094,0,-68.5545 0/1:9:6,3:6:245:3:122:-8.66322,0,-19.7202 dDocent_Contig_10025 42 . A G 33.534 . AB=0.114286;ABP=48.239;AC=2;AF=0.25;AN=8;AO=6;CIGAR=1X;DP=97;DPB=97;DPRA=0.821429;EPP=16.0391;EPPR=200.614;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.989011;PAO=0;PQA=0;PQR=0;PRO=0;QA=244;QR=3572;RO=91;RPL=0;RPP=16.0391;RPPR=200.614;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=91;SRP=200.614;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:19,3:19:747:3:122:-4.74983,0,-60.9295 0/0:28:28,0:28:1100:0:0:0,-8.42884,-99.2856 0/0:34:32,2:32:1255:2:82:0,-2.45534,-105.443 0/1:13:12,1:12:470:1:40:-0.0822893,0,-38.7354 dDocent_Contig_10026 10 . T G 92.2112 . AB=0.333333;ABP=5.9056;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=55;DPB=55;DPRA=0.837209;EPP=11.6962;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=154;QR=1969;RO=51;RPL=0;RPP=11.6962;RPPR=113.755;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:8,4:8:314:4:154:-10.6191,0,-25.0122 0/0:11:11,0:11:442:0:0:0,-3.31133,-40.136 0/0:14:14,0:14:547:0:0:0,-4.21442,-49.5711 0/0:18:18,0:18:666:0:0:0,-5.41854,-60.2567 dDocent_Contig_10027 209 . N G 112.241 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=113;QR=0;RO=0;RPL=3;RPP=9.52472;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1:0,1:0:0:1:39:-3.89656,-0.30103,0 ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:74:-7.02486,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_10028 178 . C T 74.0723 . AB=0.193548;ABP=28.2974;AC=3;AF=0.375;AN=8;AO=6;CIGAR=1X;DP=55;DPB=55;DPRA=0.430556;EPP=16.0391;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=233;QR=1872;RO=49;RPL=6;RPP=16.0391;RPPR=109.412;RPR=0;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=109.412;SRR=49;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:24:24,0:24:896:0:0:0,-7.22472,-80.9396 0/1:16:13,3:13:500:3:112:-5.6296,0,-40.527 0/1:12:10,2:10:397:2:81:-4.07337,0,-32.4761 0/1:3:2,1:2:79:1:40:-3.09259,0,-6.59415 dDocent_Contig_10030 16 . G A 837.659 . AB=0.216495;ABP=138.447;AC=4;AF=0.5;AN=8;AO=42;CIGAR=1X;DP=194;DPB=194;DPRA=0;EPP=94.2121;EPPR=333.074;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.4671;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1646;QR=5963;RO=152;RPL=0;RPP=94.2121;RPPR=333.074;RPR=42;RUN=1;SAF=42;SAP=94.2121;SAR=0;SRF=152;SRP=333.074;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:45:39,6:39:1551:6:244:-8.79248,0,-126.286 0/1:83:70,13:70:2738:13:519:-22.0708,0,-221.49 0/1:49:29,20:29:1114:20:761:-54.0456,0,-85.7655 0/1:17:14,3:14:560:3:122:-6.25498,0,-45.6235 dDocent_Contig_10031 15 . A C 440.709 . AB=0.287879;ABP=28.8048;AC=3;AF=0.375;AN=8;AO=24;CIGAR=1X;DP=140;DPB=140;DPRA=0;EPP=55.1256;EPPR=254.901;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.666667;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=963;QR=4638;RO=116;RPL=0;RPP=55.1256;RPPR=254.901;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=116;SRP=254.901;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:74:69,5:69:2765:5:205:0,-3.44121,-230.124 0/1:34:30,4:30:1197:4:161:-4.64025,0,-97.7676 0/1:18:10,8:10:398:8:326:-24.2913,0,-30.7593 0/1:14:7,7:7:278:7:271:-20.537,0,-21.1731 dDocent_Contig_10032 74 . A T 247.631 . AB=0.333333;ABP=14.5915;AC=2;AF=0.25;AN=8;AO=16;CIGAR=1X;DP=122;DPB=122;DPRA=0.648649;EPP=37.7539;EPPR=233.186;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=467;QR=3569;RO=106;RPL=16;RPP=37.7539;RPPR=233.186;RPR=0;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=106;SRP=233.186;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:12,6:12:386:6:182:-11.2616,0,-29.63 0/0:63:63,0:63:2143:0:0:0,-18.9649,-193.139 0/0:11:11,0:11:352:0:0:0,-3.31133,-31.9889 0/1:30:20,10:20:688:10:285:-16.8995,0,-53.2107 dDocent_Contig_10035 115 . A G 88.1165 . AB=0.444444;ABP=3.25157;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=49;DPB=49;DPRA=0.675;EPP=11.6962;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=59;MQMR=60;NS=4;NUMALT=1;ODDS=8.67362e-19;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=143;QR=1560;RO=45;RPL=0;RPP=11.6962;RPPR=100.727;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=100.727;SRR=45;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:8:8,0:8:279:0:0:0,-2.40824,-25.4469 0/0:24:24,0:24:818:0:0:0,-7.22472,-73.9275 0/1:9:5,4:5:180:4:143:-10.5106,0,-13.8427 0/0:8:8,0:8:283:0:0:0,-2.40824,-25.8123 dDocent_Contig_10036 67 . C A 75.8264 . AB=0.146341;ABP=47.552;AC=2;AF=0.25;AN=8;AO=8;CIGAR=1X;DP=79;DPB=79;DPRA=8.44444;EPP=20.3821;EPPR=157.185;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.875;PAIREDR=0.971831;PAO=0;PQA=0;PQR=0;PRO=0;QA=314;QR=2826;RO=71;RPL=8;RPP=20.3821;RPPR=157.185;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=71;SRP=157.185;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:15,4:15:600:4:159:-8.97238,0,-48.6174 0/1:22:20,2:20:793:2:79:-0.874584,0,-65.06 0/0:35:33,2:33:1312:2:76:0,-3.32179,-111.128 0/0:3:3,0:3:121:0:0:0,-0.90309,-11.28 dDocent_Contig_10037 45 . G T 48.5707 . AB=0.1875;ABP=16.582;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=82;DPB=82;DPRA=0.727273;EPP=9.52472;EPPR=174.557;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=3128;RO=79;RPL=0;RPP=9.52472;RPPR=174.557;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=79;SRP=174.557;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:35:35,0:35:1357:0:0:0,-10.536,-122.388 0/0:25:25,0:25:1012:0:0:0,-7.52575,-91.3737 0/1:16:13,3:13:520:3:122:-6.55601,0,-42.3278 0/0:6:6,0:6:239:0:0:0,-1.80618,-21.8839 dDocent_Contig_10038 157 . G A 96.6601 . AB=0.444444;ABP=3.25157;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=49;DPB=49;DPRA=0.675;EPP=11.6962;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=8.67362e-19;PAIRED=0.25;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=149;QR=1721;RO=45;RPL=3;RPP=5.18177;RPPR=100.727;RPR=1;RUN=1;SAF=3;SAP=5.18177;SAR=1;SRF=0;SRP=100.727;SRR=45;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:5,4:5:196:4:149:-11.0639,0,-15.3059 0/0:12:12,0:12:459:0:0:0,-3.61236,-41.6586 0/0:14:14,0:14:531:0:0:0,-4.21442,-48.1297 0/0:14:14,0:14:535:0:0:0,-4.21442,-48.4919 dDocent_Contig_10039 1 . N G 3532.27 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=108;CIGAR=1X;DP=108;DPB=108;DPRA=0;EPP=237.529;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=3903;QR=0;RO=0;RPL=0;RPP=237.529;RPPR=0;RPR=108;RUN=1;SAF=0;SAP=237.529;SAR=108;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:24:0,24:0:0:24:866:-78.2599,-7.22472,0 1/1:29:0,29:0:0:29:1049:-94.7221,-8.72987,0 1/1:34:0,34:0:0:34:1212:-109.377,-10.235,0 1/1:21:0,21:0:0:21:776:-70.1687,-6.32163,0 dDocent_Contig_10040 12 . G A 740.639 . AB=0.52;ABP=3.18402;AC=3;AF=0.375;AN=8;AO=27;CIGAR=1X;DP=78;DPB=78;DPRA=0;EPP=61.6401;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=0.888889;PAIREDR=0.901961;PAO=0;PQA=0;PQR=0;PRO=0;QA=1075;QR=2064;RO=51;RPL=0;RPP=61.6401;RPPR=113.755;RPR=27;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:28:27,1:27:1090:1:37:0,-4.73101,-94.689 0/1:12:10,2:10:405:2:81:-4.07337,0,-33.1977 0/1:22:7,15:7:285:15:602:-47.8947,0,-19.4017 0/1:16:7,9:7:284:9:355:-27.4928,0,-21.1175 dDocent_Contig_10042 133 . G A 590.776 . AB=0.315068;ABP=24.6953;AC=5;AF=0.625;AN=8;AO=29;CIGAR=1X;DP=79;DPB=79;DPRA=0;EPP=65.983;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=942;QR=1614;RO=50;RPL=0;RPP=65.983;RPPR=111.584;RPR=29;RUN=1;SAF=0;SAP=65.983;SAR=29;SRF=0;SRP=111.584;SRR=50;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:18,9:18:598:9:302:-19.3781,0,-46.0033 0/1:30:18,12:18:538:12:397:-27.0166,0,-39.6702 0/1:16:14,2:14:478:2:68:-1.64123,0,-38.5276 1/1:6:0,6:0:0:6:175:-16.0358,-1.80618,0 dDocent_Contig_10043 27 . T A 2214.92 . AB=0.678571;ABP=34.0313;AC=4;AF=0.5;AN=8;AO=76;CIGAR=1X;DP=112;DPB=112;DPRA=0;EPP=168.042;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2904;QR=1423;RO=36;RPL=0;RPP=168.042;RPPR=81.1833;RPR=76;RUN=1;SAF=76;SAP=168.042;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:43:10,33:10:403:33:1312:-105.4,0,-23.6858 0/1:34:13,21:13:506:21:778:-60.086,0,-35.6441 0/1:25:9,16:9:362:16:583:-45.2591,0,-25.4177 0/1:10:4,6:4:152:6:231:-18.145,0,-11.0353 dDocent_Contig_10044 8 . G C 833.623 . AB=0.591837;ABP=6.59988;AC=3;AF=0.375;AN=8;AO=29;CIGAR=1X;DP=60;DPB=60;DPRA=1.48485;EPP=65.983;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1127;QR=1175;RO=31;RPL=0;RPP=65.983;RPPR=70.3259;RPR=29;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:9,21:9:340:21:819:-65.0038,0,-21.9236 0/0:11:11,0:11:418:0:0:0,-3.31133,-37.9716 0/1:9:8,1:8:304:1:37:-0.988559,0,-25.0093 0/1:10:3,7:3:113:7:271:-21.746,0,-7.52911 dDocent_Contig_10045 7 . A G 378.593 . AB=0.62963;ABP=6.95112;AC=2;AF=0.25;AN=8;AO=17;CIGAR=1X;DP=46;DPB=46;DPRA=1.42105;EPP=39.9253;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=542;QR=1072;RO=28;RPL=0;RPP=39.9253;RPPR=63.8115;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:8:5,3:5:194:3:92:-6.17318,0,-15.4246 0/1:19:5,14:5:186:14:450:-35.0841,0,-11.3815 0/0:7:6,0:6:229:0:0:0,-1.80618,-20.7584 0/0:12:12,0:12:463:0:0:0,-3.61236,-42.0215 dDocent_Contig_10046 24 . G A 1676.66 . AB=0.625;ABP=14.9534;AC=4;AF=0.5;AN=8;AO=55;CIGAR=1X;DP=88;DPB=88;DPRA=0;EPP=122.441;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=59.9273;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2224;QR=1330;RO=33;RPL=0;RPP=122.441;RPPR=74.6689;RPR=55;RUN=1;SAF=55;SAP=122.441;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:2,15:2:82:15:603:-49.491,0,-2.66217 0/1:52:16,36:16:652:36:1458:-115.804,0,-43.3592 0/1:8:6,2:6:244:2:82:-5.37144,0,-19.9306 0/1:11:9,2:9:352:2:81:-4.3744,0,-28.7266 dDocent_Contig_10047 7 . A G 234.482 . AB=0.213592;ABP=76.3976;AC=3;AF=0.375;AN=8;AO=22;CIGAR=1X;DP=128;DPB=128;DPRA=1.37333;EPP=50.7827;EPPR=228.843;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.990385;PAO=0;PQA=0;PQR=0;PRO=0;QA=634;QR=3977;RO=104;RPL=0;RPP=50.7827;RPPR=228.843;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=104;SRP=228.843;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:47:33,13:33:1276:13:321:-15.1595,0,-101.165 0/1:36:32,4:32:1223:4:122:-0.441344,0,-99.528 0/0:25:25,0:25:955:0:0:0,-7.52575,-86.2656 0/1:20:14,5:14:523:5:191:-11.6837,0,-41.5616 dDocent_Contig_10048 13 . C A 1106.72 . AB=0.506494;ABP=3.0385;AC=4;AF=0.5;AN=8;AO=39;CIGAR=1X2M1X;DP=77;DPB=77;DPRA=0;EPP=87.6977;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=0.564103;PAIREDR=0.473684;PAO=0;PQA=0;PQR=0;PRO=0;QA=1540;QR=1496;RO=38;RPL=0;RPP=87.6977;RPPR=85.5263;RPR=39;RUN=1;SAF=39;SAP=87.6977;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:25:5,20:5:192:20:794:-64.2554,0,-10.1217 0|1:13:11,2:11:444:2:79:-3.58424,0,-36.4028 0|1:32:21,11:21:831:11:431:-29.5085,0,-65.4738 0|1:7:1,6:1:29:6:236:-19.5051,0,-0.792446 dDocent_Contig_10049 56 . G A 462.855 . AB=0.301587;ABP=24.5527;AC=1;AF=0.125;AN=8;AO=19;CIGAR=1X;DP=172;DPB=172;DPRA=1.73394;EPP=44.2683;EPPR=335.246;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.941176;PAO=0;PQA=0;PQR=0;PRO=0;QA=737;QR=5968;RO=153;RPL=19;RPP=44.2683;RPPR=335.246;RPR=0;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=153;SRP=335.246;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:63:44,19:44:1713:19:737:-47.6835,0,-135.425 0/0:40:40,0:40:1586:0:0:0,-12.0412,-142.973 0/0:36:36,0:36:1378:0:0:0,-10.8371,-124.263 0/0:33:33,0:33:1291:0:0:0,-9.93399,-116.453 dDocent_Contig_10050 7 . A G 817.737 . AB=0.529412;ABP=3.52123;AC=2;AF=0.25;AN=8;AO=44;CIGAR=1X;DP=197;DPB=197;DPRA=2.09877;EPP=98.5551;EPPR=330.903;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1425;QR=5775;RO=151;RPL=0;RPP=98.5551;RPPR=330.903;RPR=44;RUN=1;SAF=44;SAP=98.5551;SAR=0;SRF=151;SRP=330.903;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:102:93,8:93:3554:8:267:0,-6.18714,-295.659 0/1:31:3,28:3:113:28:876:-69.7813,0,-1.20748 0/1:37:29,8:29:1105:8:282:-14.5807,0,-88.614 0/0:27:26,0:26:1003:0:0:0,-7.82678,-90.3068 dDocent_Contig_10051 109 . G A 185.425 . AB=0.34375;ABP=9.79615;AC=1;AF=0.125;AN=8;AO=11;CIGAR=1X;DP=79;DPB=79;DPRA=2.04255;EPP=26.8965;EPPR=148.499;GTI=0;LEN=1;MEANALT=2;MQM=56.1818;MQMR=38.9851;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=0.909091;PAIREDR=0.462687;PAO=0;PQA=0;PQR=0;PRO=0;QA=342;QR=2232;RO=67;RPL=0;RPP=26.8965;RPPR=148.499;RPR=11;RUN=1;SAF=0;SAP=26.8965;SAR=11;SRF=0;SRP=148.499;SRR=67;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:32:20,11:20:662:11:342:-19.9404,0,-42.353 0/0:20:20,0:20:642:0:0:0,-6.0206,-47.0082 0/0:23:23,0:23:789:0:0:0,-6.92369,-56.9446 0/0:4:4,0:4:139:0:0:0,-1.20412,-5.3248 dDocent_Contig_10052 31 . A C 397.213 . AB=0.146893;ABP=194.701;AC=4;AF=0.5;AN=8;AO=26;CIGAR=1X3M;DP=177;DPB=177;DPRA=0;EPP=59.4686;EPPR=307.016;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.538462;PAIREDR=0.985714;PAO=0;PQA=0;PQR=0;PRO=0;QA=1042;QR=5476;RO=140;RPL=0;RPP=59.4686;RPPR=307.016;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=140;SRP=307.016;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:37:30,1,6:30:1185:1,6:41,241:-10.8207,-16.4664,-113.67,0,-94.1108,-95.6892 0|1:58:48,5,4:48:1880:5,4:197,164:-1.78022,0,-153.113,-2.66809,-141.08,-156.084 0|1:53:39,2,10:39:1529:2,10:76,396:-20.901,-26.4087,-151.552,0,-119.559,-122.781 0|1:29:23,0,6:23:882:0,6:0,241:-13.3364,-20.2601,-92.6238,0,-72.7611,-70.955 dDocent_Contig_10053 13 . T A 1101.32 . AB=0.0392157;ABP=285.174;AC=4;AF=0.5;AN=8;AO=6;CIGAR=2X3M2X3M1X;DP=174;DPB=174;DPRA=0;EPP=16.0391;EPPR=244.044;GTI=0;LEN=1;MEANALT=3.33333;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=229;QR=4358;RO=111;RPL=0;RPP=16.0391;RPPR=244.044;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=111;SRP=244.044;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:43:28,1,10,3:28:1096:1,10,3:38,368,117:-21.6879,-26.9983,-116.84,0,-87.056,-87.1622,-20.4901,-107.523,-80.554,-109.736 0|1:52:36,5,8,2:36:1406:5,8,2:188,296,73:-13.3733,-8.80675,-122.9,0,-100.195,-113.188,-18.2476,-118.442,-109.633,-133.241 0|1:58:39,0,18,1:39:1538:0,18,1:0,672,39:-43.2629,-55.0031,-181.559,0,-126.547,-121.129,-51.7963,-178.353,-123.341,-178.052 0|1:21:8,0,13,0:8:318:0,13,0:0,502,0:-39.2059,-41.6141,-67.8006,0,-26.5793,-22.6659,-41.6141,-67.8006,-26.5793,-67.8006 dDocent_Contig_10054 18 . C G 1618.4 . AB=0.56;ABP=6.13722;AC=4;AF=0.5;AN=8;AO=56;CIGAR=1X3M1X6M1X;DP=100;DPB=100;DPRA=0;EPP=124.613;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1.75;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=0.767857;PAIREDR=0.815789;PAO=0;PQA=0;PQR=0;PRO=0;QA=2184;QR=1489;RO=38;RPL=0;RPP=124.613;RPPR=85.5263;RPR=56;RUN=1;SAF=56;SAP=124.613;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:17:8,0,9,0:8:318:0,9,0:0,356,0:-27.2851,-29.6933,-55.8763,0,-26.5792,-23.8699,-29.6933,-55.8763,-26.5792,-55.8763 0|1:33:4,0,29,0:4:156:0,29,0:0,1132,0:-92.2337,-93.4378,-106.261,0,-13.2127,-4.48283,-93.4378,-106.261,-13.2127,-106.261 0|1:30:17,3,7,2:17:667:3,7,2:120,277,81:-17.6852,-12.9149,-66.87,0,-44.9737,-52.7531,-16.1211,-61.0928,-48.1798,-70.3771 0|1:20:9,0,11,0:9:348:0,11,0:0,419,0:-32.034,-34.7433,-63.3279,0,-28.9683,-25.657,-34.7433,-63.3279,-28.9683,-63.3279 dDocent_Contig_10055 26 . G A 88.0904 . AB=0.153846;ABP=43.6001;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=290;DPB=290;DPRA=0.466135;EPP=16.0391;EPPR=617.537;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=243;QR=11412;RO=283;RPL=0;RPP=16.0391;RPPR=617.537;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=283;SRP=617.537;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:104:103,0:103:4156:0:0:0,-31.0061,-373.584 0/0:126:126,0:126:5069:0:0:0,-37.9298,-456.07 0/0:21:21,0:21:857:0:0:0,-6.32163,-77.4387 0/1:39:33,6:33:1330:6:243:-10.508,0,-108.221 dDocent_Contig_10056 13 . A T 1139.67 . AB=0.461538;ABP=4.17955;AC=4;AF=0.5;AN=8;AO=42;CIGAR=1X2M1X3M1X;DP=91;DPB=91;DPRA=0;EPP=94.2121;EPPR=105.07;GTI=0;LEN=1;MEANALT=1.25;MQM=58.9286;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0.93617;PAO=0;PQA=0;PQR=0;PRO=0;QA=1636;QR=1797;RO=47;RPL=0;RPP=94.2121;RPPR=105.07;RPR=42;RUN=1;SAF=42;SAP=94.2121;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:28:13,0,15:13:490:0,15:0,567:-42.8822,-46.7956,-86.9443,0,-40.5256,-36.0101 0|1:28:8,0,20:8:304:0,20:0,795:-63.3711,-65.7793,-90.7032,0,-25.3084,-19.2878 0|1:20:14,2,4:14:550:2,4:78,155:-8.53189,-6.72186,-51.3612,0,-39.2305,-44.0541 0|1:15:12,0,3:12:453:0,3:0,119:-6.57994,-10.1923,-47.3026,0,-37.5027,-36.5996 dDocent_Contig_10057 147 . A G 473.536 . AB=0.5;ABP=3.0103;AC=1;AF=0.125;AN=8;AO=16;CIGAR=1X;DP=54;DPB=54;DPRA=4.36364;EPP=37.7539;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=645;QR=1489;RO=38;RPL=0;RPP=37.7539;RPPR=85.5263;RPR=16;RUN=1;SAF=0;SAP=37.7539;SAR=16;SRF=0;SRP=85.5263;SRR=38;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:32:16,16:16:637:16:645:-48.7515,0,-48.0282 0/0:5:5,0:5:201:0:0:0,-1.50515,-18.4705 0/0:5:5,0:5:196:0:0:0,-1.50515,-18.0139 0/0:12:12,0:12:455:0:0:0,-3.61236,-41.2875 dDocent_Contig_10058 7 . A T 68.5395 . AB=0.172414;ABP=30.0414;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=107;DPB=107;DPRA=1.81579;EPP=16.0391;EPPR=222.329;GTI=0;LEN=1;MEANALT=1;MQM=56.6667;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=0;PAIREDR=0.90099;PAO=0;PQA=0;PQR=0;PRO=0;QA=227;QR=3885;RO=101;RPL=0;RPP=16.0391;RPPR=222.329;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=101;SRP=222.329;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:34:34,0:34:1305:0:0:0,-10.235,-117.737 0/1:29:24,5:24:921:5:188:-8.55285,0,-74.4767 0/0:40:39,1:39:1504:1:39:0,-8.39508,-131.987 0/0:4:4,0:4:155:0:0:0,-1.20412,-14.3254 dDocent_Contig_10059 145 . G A 180.452 . AB=0.244898;ABP=30.7077;AC=2;AF=0.25;AN=8;AO=13;CIGAR=1X;DP=114;DPB=114;DPRA=1.25;EPP=31.2394;EPPR=222.329;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=427;QR=3492;RO=101;RPL=0;RPP=31.2394;RPPR=222.329;RPR=13;RUN=1;SAF=0;SAP=31.2394;SAR=13;SRF=0;SRP=222.329;SRR=101;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:37:28,9:28:976:9:298:-16.0047,0,-77.0148 0/1:12:9,3:9:316:3:97:-5.4384,0,-25.1672 0/0:24:24,0:24:815:0:0:0,-7.22472,-73.6619 0/0:41:40,1:40:1385:1:32:0,-9.14292,-121.747 dDocent_Contig_10060 22 . A G 352.745 . AB=0.378378;ABP=7.76406;AC=3;AF=0.375;AN=8;AO=14;CIGAR=1X;DP=46;DPB=46;DPRA=1.37037;EPP=33.4109;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.928571;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=564;QR=1257;RO=31;RPL=0;RPP=33.4109;RPPR=70.3259;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:9,5:9:365:5:203:-14.4386,0,-29.0006 0/1:17:10,7:10:406:7:279:-20.3622,0,-31.7829 0/1:6:3,2:3:117:2:82:-5.87166,0,-9.00706 0/0:9:9,0:9:369:0:0:0,-2.70927,-33.5755 dDocent_Contig_10061 105 . N T 515.381 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=16;CIGAR=3X;DP=16;DPB=16;DPRA=0;EPP=37.7539;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=1.69407e-21;PAIRED=0.9375;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=556;QR=0;RO=0;RPL=0;RPP=37.7539;RPPR=0;RPR=16;RUN=1;SAF=0;SAP=37.7539;SAR=16;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. 1|1:8:0,8:0:0:8:280:-25.54,-2.40824,0 1|1:4:0,4:0:0:4:138:-12.7604,-1.20412,0 1|1:4:0,4:0:0:4:138:-12.7604,-1.20412,0 dDocent_Contig_10062 141 . G A 381.678 . AB=0.278689;ABP=28.9612;AC=2;AF=0.25;AN=8;AO=24;CIGAR=1X;DP=189;DPB=189;DPRA=0;EPP=55.1256;EPPR=361.303;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=933;QR=6399;RO=165;RPL=0;RPP=55.1256;RPPR=361.303;RPR=24;RUN=1;SAF=0;SAP=55.1256;SAR=24;SRF=0;SRP=361.303;SRR=165;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:76:72,4:72:2741:4:162:0,-7.91132,-231.847 0/0:52:49,3:49:1929:3:113:0,-5.11754,-163.284 0/1:40:29,11:29:1130:11:431:-27.0961,0,-89.9457 0/1:21:15,6:15:599:6:227:-14.4697,0,-47.9277 dDocent_Contig_10063 45 . C T 72.8291 . AB=0.119403;ABP=87.3088;AC=2;AF=0.25;AN=8;AO=8;CIGAR=1X;DP=123;DPB=123;DPRA=1.19643;EPP=20.3821;EPPR=252.73;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.7304;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.991304;PAO=0;PQA=0;PQR=0;PRO=0;QA=313;QR=4608;RO=115;RPL=8;RPP=20.3821;RPPR=252.73;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=115;SRP=252.73;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:54:47,7:47:1888:7:273:-8.67954,0,-153.865 0/0:47:47,0:47:1875:0:0:0,-14.1484,-168.843 0/1:13:12,1:12:476:1:40:-0.0822893,0,-39.2731 0/0:9:9,0:9:369:0:0:0,-2.70927,-33.5755 dDocent_Contig_10064 23 . G A 851.267 . AB=0.311927;ABP=36.4988;AC=4;AF=0.5;AN=8;AO=34;CIGAR=1X1M1X;DP=109;DPB=109;DPRA=0;EPP=76.8404;EPPR=155.013;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=1.38778e-17;PAIRED=1;PAIREDR=0.971429;PAO=0;PQA=0;PQR=0;PRO=0;QA=1364;QR=2731;RO=70;RPL=0;RPP=76.8404;RPPR=155.013;RPR=34;RUN=1;SAF=34;SAP=76.8404;SAR=0;SRF=70;SRP=155.013;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:25:18,7,0:18:717:7,0:280,0:-18.0464,0,-57.3282,-23.4649,-59.4354,-82.5013 0|1:30:17,8,5:17:645:8,5:323,193:-21.5208,0,-50.4623,-10.7983,-37.0223,-62.1523 0|1:28:20,8,0:20:774:8,0:321,0:-20.8287,0,-61.5516,-26.8493,-63.9599,-90.4124 0|1:26:15,11,0:15:595:11,0:440,0:-32.1287,0,-46.0605,-36.6442,-49.3718,-85.6178 dDocent_Contig_10065 17 . G A 81.5963 . AB=0.172414;ABP=30.0414;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=130;DPB=130;DPRA=0.911765;EPP=16.0391;EPPR=272.273;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.983871;PAO=0;PQA=0;PQR=0;PRO=0;QA=237;QR=4921;RO=124;RPL=0;RPP=16.0391;RPPR=272.273;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=124;SRP=272.273;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:24,5:24:932:5:199:-9.55757,0,-75.4455 0/0:56:56,0:56:2229:0:0:0,-16.8577,-200.777 0/0:33:32,1:32:1287:1:38:0,-6.13672,-112.298 0/0:12:12,0:12:473:0:0:0,-3.61236,-42.9179 dDocent_Contig_10066 90 . A C 41.8384 . AB=0.230769;ABP=11.1951;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=94;DPB=94;DPRA=0.481481;EPP=9.52472;EPPR=200.614;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=105;QR=3072;RO=91;RPL=3;RPP=9.52472;RPPR=200.614;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=91;SRP=200.614;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:36:36,0:36:1205:0:0:0,-10.8371,-108.75 0/0:38:38,0:38:1291:0:0:0,-11.4391,-116.49 0/1:13:10,3:10:339:3:105:-5.88277,0,-26.9251 0/0:7:7,0:7:237:0:0:0,-2.10721,-21.6617 dDocent_Contig_10067 56 . C A 44.6373 . AB=0.176471;ABP=18.4661;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=182;DPB=182;DPRA=1.67647;EPP=18.2106;EPPR=383.018;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=278;QR=6925;RO=175;RPL=7;RPP=18.2106;RPPR=383.018;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=175;SRP=383.018;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:97:93,4:93:3688:4:157:0,-14.692,-317.426 0/0:49:49,0:49:1936:0:0:0,-14.7505,-174.443 0/1:17:14,3:14:536:3:121:-6.16269,0,-43.457 0/0:19:19,0:19:765:0:0:0,-5.71957,-69.1721 dDocent_Contig_10068 75 . A T 641.305 . AB=0.444444;ABP=4.69922;AC=3;AF=0.375;AN=8;AO=28;CIGAR=1X;DP=68;DPB=68;DPRA=4.2;EPP=63.8115;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=952;QR=1375;RO=40;RPL=28;RPP=63.8115;RPPR=89.8692;RPR=0;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:32:17,15:17:585:15:512:-36.7716,0,-43.3398 0/1:20:8,12:8:291:12:405:-30.7551,0,-20.5192 0/1:11:10,1:10:328:1:35:-0.187299,0,-26.5224 0/0:5:5,0:5:171:0:0:0,-1.50515,-15.7263 dDocent_Contig_10071 70 . C G 92.7351 . AB=0.216216;ABP=28.8919;AC=3;AF=0.375;AN=8;AO=9;CIGAR=1X;DP=54;DPB=54;DPRA=0;EPP=22.5536;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=0.222222;PAIREDR=0.8;PAO=0;PQA=0;PQR=0;PRO=0;QA=310;QR=1534;RO=45;RPL=9;RPP=22.5536;RPPR=100.727;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:17:16,1:16:556:1:35:0,-1.61888,-46.87 0/1:23:19,4:19:663:4:135:-5.55961,0,-53.0722 0/1:3:1,2:1:35:2:70:-5.74431,0,-2.59554 0/1:11:9,2:9:280:2:70:-3.33607,0,-22.1912 dDocent_Contig_10072 21 . G A 112.115 . AB=0;ABP=0;AC=2;AF=0.25;AN=8;AO=3;CIGAR=1X;DP=38;DPB=38;DPRA=0.257143;EPP=9.52472;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.38813e-21;PAIRED=0.666667;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=117;QR=1294;RO=35;RPL=0;RPP=9.52472;RPPR=79.0118;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7346 1/1:3:0,3:0:0:3:117:-10.9104,-0.90309,0 0/0:16:16,0:16:586:0:0:0,-4.81648,-53.0718 0/0:9:9,0:9:348:0:0:0,-2.70927,-31.6798 dDocent_Contig_10073 8 . G A 55.9789 . AB=0.138889;ABP=43.7857;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=91;DPB=91;DPRA=1.96364;EPP=13.8677;EPPR=189.757;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=194;QR=3260;RO=86;RPL=0;RPP=13.8677;RPPR=189.757;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=86;SRP=189.757;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:31,5:31:1152:5:194:-6.99576,0,-93.1342 0/0:32:32,0:32:1230:0:0:0,-9.63296,-110.995 0/0:19:19,0:19:726:0:0:0,-5.71957,-65.6703 0/0:4:4,0:4:152:0:0:0,-1.20412,-14.0492 dDocent_Contig_10075 10 . C T 38.9464 . AB=0.115385;ABP=69.8248;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=176;DPB=176;DPRA=0.87234;EPP=18.2106;EPPR=369.989;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.946746;PAO=0;PQA=0;PQR=0;PRO=0;QA=272;QR=6781;RO=169;RPL=0;RPP=18.2106;RPPR=369.989;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=169;SRP=369.989;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:65:65,0:65:2607:0:0:0,-19.5669,-234.758 0/1:52:46,6:46:1828:6:232:-5.59355,0,-149.071 0/0:30:29,1:29:1174:1:40:0,-5.03522,-101.941 0/0:29:29,0:29:1172:0:0:0,-8.72987,-105.756 dDocent_Contig_10076 17 . A T 125.575 . AB=0.357143;ABP=5.49198;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=103;DPB=103;DPRA=0.850575;EPP=18.2106;EPPR=211.472;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.96875;PAO=0;PQA=0;PQR=0;PRO=0;QA=283;QR=3616;RO=96;RPL=0;RPP=18.2106;RPPR=211.472;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=96;SRP=211.472;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:29:29,0:29:1120:0:0:0,-8.72987,-101.095 0/0:35:34,1:34:1260:1:41:0,-6.44148,-109.589 0/0:25:24,1:24:891:1:41:0,-3.43118,-76.4108 0/1:14:9,5:9:345:5:201:-14.2565,0,-27.1923 dDocent_Contig_10077 1 . N G 66.4657 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=70;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:70:-6.64548,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_10079 36 . G C 168.267 . AB=0.333333;ABP=8.07707;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=73;DPB=73;DPRA=1.21154;EPP=18.2106;EPPR=146.327;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=272;QR=2518;RO=66;RPL=0;RPP=18.2106;RPPR=146.327;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=66;SRP=146.327;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:36:36,0:36:1347:0:0:0,-10.8371,-121.499 0/1:21:14,7:14:548:7:272:-18.5256,0,-43.3416 0/0:11:11,0:11:431:0:0:0,-3.31133,-39.1437 0/0:5:5,0:5:192:0:0:0,-1.50515,-17.6484 dDocent_Contig_10082 15 . G A 1108.53 . AB=0.314607;ABP=56.1504;AC=4;AF=0.5;AN=8;AO=56;CIGAR=1X;DP=178;DPB=178;DPRA=0;EPP=124.613;EPPR=267.93;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=0.875;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1895;QR=4868;RO=122;RPL=0;RPP=124.613;RPPR=267.93;RPR=56;RUN=1;SAF=56;SAP=124.613;SAR=0;SRF=122;SRP=267.93;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:65:56,9:56:2252:9:305:-8.21254,0,-183.271 0/1:48:23,25:23:910:25:855:-62.8089,0,-67.7572 0/1:49:36,13:36:1431:13:436:-24.811,0,-114.286 0/1:16:7,9:7:275:9:299:-22.418,0,-20.3013 dDocent_Contig_10083 16 . A G 1319.55 . AB=0.422414;ABP=9.07545;AC=4;AF=0.5;AN=8;AO=49;CIGAR=1X;DP=116;DPB=116;DPRA=0;EPP=100.904;EPPR=148.499;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=0.938776;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1921;QR=2667;RO=67;RPL=0;RPP=109.412;RPPR=148.499;RPR=49;RUN=1;SAF=48;SAP=100.904;SAR=1;SRF=67;SRP=148.499;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:7,11:7:276:11:434:-33.9938,0,-19.7897 0/1:47:38,9:38:1518:9:351:-17.7997,0,-122.719 0/1:26:5,21:5:194:21:812:-65.5563,0,-10.0017 0/1:25:17,8:17:679:8:324:-22.0031,0,-53.9122 dDocent_Contig_10086 26 . T A 1737.06 . AB=0.383234;ABP=22.7876;AC=4;AF=0.5;AN=8;AO=64;CIGAR=1X;DP=167;DPB=167;DPRA=0;EPP=141.985;EPPR=226.672;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.984375;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2556;QR=4121;RO=103;RPL=0;RPP=141.985;RPPR=226.672;RPR=64;RUN=1;SAF=64;SAP=141.985;SAR=0;SRF=103;SRP=226.672;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:30,6:30:1217:6:242:-11.3202,0,-98.9636 0/1:65:37,28:37:1464:28:1114:-80.9764,0,-112.435 0/1:33:23,10:23:932:10:398:-26.2439,0,-74.2476 0/1:33:13,20:13:508:20:802:-62.5631,0,-36.1274 dDocent_Contig_10088 22 . C T 115.814 . AB=0;ABP=0;AC=2;AF=0.25;AN=8;AO=3;CIGAR=1X;DP=26;DPB=26;DPRA=0.391304;EPP=9.52472;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=121;QR=922;RO=23;RPL=0;RPP=9.52472;RPPR=52.9542;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:7:7,0:7:285:0:0:0,-2.10721,-26.0242 0/0:8:8,0:8:322:0:0:0,-2.40824,-29.3485 0/0:8:8,0:8:315:0:0:0,-2.40824,-28.711 1/1:3:0,3:0:0:3:121:-11.2802,-0.90309,0 dDocent_Contig_10089 9 . A C 403.786 . AB=0.213592;ABP=76.3976;AC=3;AF=0.375;AN=8;AO=22;CIGAR=1X;DP=147;DPB=147;DPRA=0.780303;EPP=50.7827;EPPR=274.444;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.909091;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=841;QR=4752;RO=125;RPL=0;RPP=50.7827;RPPR=274.444;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=125;SRP=274.444;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:73:61,12:61:2317:12:451:-18.9591,0,-186.769 0/0:44:44,0:44:1669:0:0:0,-13.2453,-150.474 0/1:20:14,6:14:537:6:234:-15.4105,0,-42.6541 0/1:10:6,4:6:229:4:156:-11.407,0,-17.9654 dDocent_Contig_10090 205 . T G 351.262 . AB=0.313433;ABP=23.2666;AC=4;AF=0.5;AN=8;AO=21;CIGAR=1X;DP=67;DPB=67;DPRA=0;EPP=48.6112;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=681;QR=1655;RO=46;RPL=21;RPP=48.6112;RPPR=102.898;RPR=0;RUN=1;SAF=0;SAP=48.6112;SAR=21;SRF=0;SRP=102.898;SRR=46;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:6,9:6:222:9:301:-22.901,0,-15.8226 0/1:21:17,4:17:619:4:125:-5.23851,0,-49.7227 0/1:14:12,2:12:418:2:65:-1.95903,0,-33.7351 0/1:17:11,6:11:396:6:190:-12.2956,0,-30.8632 dDocent_Contig_10091 136 . C G 51.0604 . AB=0.115385;ABP=69.8248;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=130;DPB=130;DPRA=1.70833;EPP=18.2106;EPPR=270.101;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=280;QR=4905;RO=123;RPL=0;RPP=18.2106;RPPR=270.101;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=270.101;SRR=123;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:52:46,6:46:1843:6:242:-6.50397,0,-150.424 0/0:8:8,0:8:321:0:0:0,-2.40824,-29.2579 0/0:40:40,0:40:1593:0:0:0,-12.0412,-143.606 0/0:30:29,1:29:1148:1:38:0,-5.23363,-99.8029 dDocent_Contig_10092 17 . C T 6613.15 . AB=0.111111;ABP=133.057;AC=1;AF=0.125;AN=8;AO=11;CIGAR=1X1M1X;DP=251;DPB=251;DPRA=0;EPP=26.8965;EPPR=79.0118;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=437;QR=1401;RO=35;RPL=0;RPP=26.8965;RPPR=79.0118;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:86:9,0,77:9:358:0,77:0,3075:-250.933,-253.642,-283.117,0,-29.8721,-6.69284 0|0:66:7,0,59:7:284:0,59:0,2332:-190.178,-192.285,-215.708,0,-23.8266,-6.06581 0|0:64:13,3,48:13:527:3,48:117,1914:-153.709,-148.005,-190.562,0,-33.8566,-29.0218 1|0:35:6,8,21:6:232:8,21:320,831:-73.8929,-49.3379,-65.9818,-7.3191,0,-20.046 dDocent_Contig_10093 7 . A C 83.2021 . AB=0.266667;ABP=10.1038;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=73;DPB=73;DPRA=0.775862;EPP=11.6962;EPPR=152.842;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.985507;PAO=0;PQA=0;PQR=0;PRO=0;QA=154;QR=2645;RO=69;RPL=0;RPP=11.6962;RPPR=152.842;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=69;SRP=152.842;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:11,4:11:422:4:154:-9.71814,0,-33.8175 0/0:26:26,0:26:999:0:0:0,-7.82678,-90.2217 0/0:25:25,0:25:952:0:0:0,-7.52575,-85.9948 0/0:7:7,0:7:272:0:0:0,-2.10721,-24.8472 dDocent_Contig_10094 154 . A G 1065.45 . AB=0.550725;ABP=4.55236;AC=4;AF=0.5;AN=8;AO=38;CIGAR=1X;DP=69;DPB=69;DPRA=0;EPP=85.5263;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1477;QR=1140;RO=31;RPL=0;RPP=85.5263;RPPR=70.3259;RPR=38;RUN=1;SAF=0;SAP=85.5263;SAR=38;SRF=0;SRP=70.3259;SRR=31;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:34:8,26:8:312:26:1003:-80.3293,0,-18.2074 0/1:20:14,6:14:493:6:236:-15.5919,0,-38.6635 0/1:7:6,1:6:219:1:38:-1.69006,0,-17.9536 0/1:8:3,5:3:116:5:200:-15.9717,0,-8.4093 dDocent_Contig_10095 21 . C A 39.8484 . AB=0.113208;ABP=71.8828;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=150;DPB=150;DPRA=1.63918;EPP=16.0391;EPPR=315.702;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=233;QR=5811;RO=144;RPL=0;RPP=16.0391;RPPR=315.702;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=144;SRP=315.702;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:53:47,6:47:1892:6:233:-5.38273,0,-154.521 0/0:41:41,0:41:1658:0:0:0,-12.3422,-149.442 0/0:30:30,0:30:1219:0:0:0,-9.0309,-109.978 0/0:26:26,0:26:1042:0:0:0,-7.82678,-94.066 dDocent_Contig_10097 20 . A T 2110.3 . AB=0.349138;ABP=48.8733;AC=4;AF=0.5;AN=8;AO=81;CIGAR=1X;DP=232;DPB=232;DPRA=0;EPP=178.9;EPPR=330.903;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3189;QR=6069;RO=151;RPL=0;RPP=178.9;RPPR=330.903;RPR=81;RUN=1;SAF=81;SAP=178.9;SAR=0;SRF=151;SRP=330.903;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:129:90,39:90:3602:39:1547:-100.636,0,-285.371 0/1:75:44,31:44:1783:31:1202:-85.8694,0,-138.101 0/1:22:14,8:14:562:8:321:-22.6343,0,-44.3 0/1:6:3,3:3:122:3:119:-9.28883,0,-9.56631 dDocent_Contig_10098 15 . A G 189.43 . AB=0.28125;ABP=16.3106;AC=2;AF=0.25;AN=8;AO=10;CIGAR=2X;DP=80;DPB=80;DPRA=0.5;EPP=24.725;EPPR=155.013;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.9;PAIREDR=0.971429;PAO=0;PQA=0;PQR=0;PRO=0;QA=387;QR=2790;RO=70;RPL=0;RPP=24.725;RPPR=155.013;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=70;SRP=155.013;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:32:32,0:32:1273:0:0:0,-9.63296,-114.844 0|1:7:3,4:3:122:4:159:-12.5851,0,-9.26528 0|1:25:20,5:20:805:5:188:-9.75568,0,-65.2422 0|0:16:15,1:15:590:1:40:0,-0.820801,-49.4396 dDocent_Contig_10099 20 . T A 39.3611 . AB=0.125;ABP=42.0968;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=81;DPB=81;DPRA=1.95918;EPP=11.6962;EPPR=170.214;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=162;QR=3078;RO=77;RPL=0;RPP=11.6962;RPPR=170.214;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=77;SRP=170.214;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:32:28,4:28:1112:4:162:-5.334,0,-90.7268 0/0:21:21,0:21:842:0:0:0,-6.32163,-76.0917 0/0:18:18,0:18:722:0:0:0,-5.41854,-65.3036 0/0:10:10,0:10:402:0:0:0,-3.0103,-36.5395 dDocent_Contig_10100 30 . G A 347.81 . AB=0.178862;ABP=113.19;AC=3;AF=0.375;AN=8;AO=25;CIGAR=1X;DP=191;DPB=191;DPRA=0;EPP=57.2971;EPPR=363.475;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=954;QR=6643;RO=166;RPL=0;RPP=57.2971;RPPR=363.475;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=166;SRP=363.475;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:49:41,8:41:1638:8:305:-13.0544,0,-132.899 0/1:54:49,5:49:1954:5:188:-1.02651,0,-159.796 0/0:68:65,3:65:2617:3:119:0,-9.37502,-224.557 0/1:20:11,9:11:434:9:342:-25.1131,0,-33.3914 dDocent_Contig_10101 18 . A C 272.872 . AB=0.242424;ABP=22.0271;AC=3;AF=0.375;AN=8;AO=11;CIGAR=1X3M1X;DP=60;DPB=60;DPRA=1.5;EPP=26.8965;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=421;QR=1913;RO=49;RPL=0;RPP=26.8965;RPPR=109.412;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:33:25,8:25:979:8:305:-17.868,0,-78.4825 0|0:14:14,0:14:539:0:0:0,-4.21442,-48.8464 0|0:10:10,0:10:395:0:0:0,-3.0103,-35.9084 1|1:3:0,3:0:0:3:116:-10.817,-0.90309,0 dDocent_Contig_10102 8 . G T 116.34 . AB=0.108571;ABP=235.904;AC=1;AF=0.125;AN=8;AO=21;CIGAR=1X;DP=446;DPB=446;DPRA=1.15459;EPP=48.6112;EPPR=917.2;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=59.7007;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.817102;PAO=0;PQA=0;PQR=0;PRO=0;QA=801;QR=16116;RO=421;RPL=0;RPP=48.6112;RPPR=917.2;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=421;SRP=917.2;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:175:154,19:154:5883:19:724:-13.032,0,-476.031 0/0:171:171,0:171:6533:0:0:0,-51.4761,-587.374 0/0:64:61,2:61:2347:2:77:0,-12.0172,-204.097 0/0:36:35,0:35:1353:0:0:0,-10.536,-121.684 dDocent_Contig_10103 46 . T A 1713.81 . AB=0.205036;ABP=213.096;AC=2;AF=0.25;AN=8;AO=57;CIGAR=2X4M2I4M;DP=278;DPB=308.4;DPRA=0;EPP=126.784;EPPR=272.273;GTI=0;LEN=1;MEANALT=4.5;MQM=59.9474;MQMR=60;NS=4;NUMALT=5;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2018;QR=4831;RO=124;RPL=57;RPP=126.784;RPPR=272.273;RPR=0;RUN=1;SAF=57;SAP=126.784;SAR=0;SRF=124;SRP=272.273;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:139:68,36,0,11,2,22:68:2644:36,0,11,2,22:1294,0,415,74,769:-85.0756,0,-206.451,-105.546,-217.288,-322.829,-71.5313,-183.277,-288.817,-285.506,-99.4913,-211.234,-316.775,-282.763,-316.173,-42.9991,-154.745,-260.282,-226.271,-254.228,-253.66 0|1:68:33,6,2,8,0,19:33:1287:6,2,8,0,19:205,78,306,0,685:-45.955,-39.2617,-143.251,-49.4757,-138.646,-154.672,-30.7741,-119.948,-130.164,-134.168,-55.889,-145.058,-155.274,-136.576,-161.686,0,-89.1731,-99.3872,-80.6899,-105.799,-100.08 0|0:49:16,5,11,2,5,9:16:625:5,11,2,5,9:182,417,78,176,313:-29.3763,-19.3286,-69.2114,0,-36.529,-48.0809,-27.7795,-64.3041,-44.9795,-78.5654,-19.8674,-56.3916,-37.0675,-64.8422,-69.7494,-8.75368,-45.2777,-25.954,-53.7276,-45.8161,-57.4307 0|1:22:7,6,1,0,0,7:7:275:6,1,0,0,7:226,40,0,0,251:-18.3705,-1.9406,-22.7796,-17.1792,-21.288,-39.5125,-20.4778,-24.5858,-39.8136,-43.1104,-20.4778,-24.5858,-39.8136,-43.1104,-43.1104,0,-4.11554,-19.3446,-22.6421,-22.6421,-20.5349 dDocent_Contig_10104 209 . N G 76.8682 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:81:-7.68573,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_10105 98 . N A 521.966 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=16;CIGAR=1X;DP=16;DPB=16;DPRA=0;EPP=37.7539;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=558;QR=0;RO=0;RPL=16;RPP=37.7539;RPPR=0;RPR=0;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:103:-9.61002,-0.90309,0 1/1:10:0,10:0:0:10:350:-31.8375,-3.0103,0 1/1:1:0,1:0:0:1:35:-3.49863,-0.30103,0 1/1:2:0,2:0:0:2:70:-6.6474,-0.60206,0 dDocent_Contig_10107 28 . C A 2425.06 . AB=0.0833333;ABP=57.2971;AC=0;AF=0;AN=8;AO=3;CIGAR=1X1M1X1M;DP=175;DPB=175;DPRA=0;EPP=9.52472;EPPR=181.071;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=3213;RO=82;RPL=0;RPP=9.52472;RPPR=181.071;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=82;SRP=181.071;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:72:29,0,0,43:29:1138:0,0,43:0,0,1695:-131.103,-139.833,-233.413,-139.833,-233.413,-233.413,0,-93.9731,-93.9731,-81.0288 0|0:51:31,0,3,17:31:1228:0,3,17:0,122,675:-46.2233,-55.5552,-156.624,-45.4905,-146.56,-145.657,0,-101.061,-90.9966,-95.9433 0|0:36:14,3,3,16:14:534:3,3,16:122,122,634:-47.9559,-42.1059,-84.9969,-42.1059,-75.8351,-84.9969,0,-33.7171,-33.7171,-38.9669 0|0:16:8,0,0,8:8:313:0,0,8:0,0,323:-24.6216,-27.0298,-52.7548,-27.0298,-52.7548,-52.7548,0,-26.122,-26.122,-23.7137 dDocent_Contig_10108 23 . T C 432.044 . AB=0.216495;ABP=70.7289;AC=3;AF=0.375;AN=8;AO=26;CIGAR=1X;DP=167;DPB=167;DPRA=0;EPP=59.4686;EPPR=309.188;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1057;QR=5663;RO=141;RPL=0;RPP=59.4686;RPPR=309.188;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=141;SRP=309.188;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:70:65,5:65:2619:5:205:0,-2.23709,-216.991 0/1:41:32,9:32:1262:9:363:-20.6916,0,-101.504 0/1:35:28,7:28:1137:7:285:-15.4884,0,-92.0705 0/1:21:16,5:16:645:5:204:-12.4224,0,-52.0619 dDocent_Contig_10109 74 . A C 315.2 . AB=0.233766;ABP=50.4161;AC=3;AF=0.375;AN=8;AO=18;CIGAR=1X;DP=112;DPB=112;DPRA=0.733333;EPP=42.0968;EPPR=207.129;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.946809;PAO=0;PQA=0;PQR=0;PRO=0;QA=656;QR=3378;RO=94;RPL=18;RPP=42.0968;RPPR=207.129;RPR=0;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=94;SRP=207.129;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:37:28,9:28:1001:9:330:-18.9117,0,-79.265 0/0:35:35,0:35:1263:0:0:0,-10.536,-113.972 0/1:25:21,4:21:748:4:142:-5.60317,0,-60.1165 0/1:15:10,5:10:366:5:184:-12.403,0,-28.772 dDocent_Contig_10110 49 . A C 1062.59 . AB=0.26875;ABP=77.3289;AC=4;AF=0.5;AN=8;AO=43;CIGAR=1M1X7M;DP=160;DPB=154.333;DPRA=0;EPP=96.3836;EPPR=217.986;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.959596;PAO=0;PQA=0;PQR=0;PRO=0;QA=1736;QR=3896;RO=99;RPL=43;RPP=96.3836;RPPR=217.986;RPR=0;RUN=1;SAF=43;SAP=96.3836;SAR=0;SRF=99;SRP=217.986;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:58:30,7,21:30:1184:7,21:240,848:-60.9225,-50.4895,-145.8,0,-77.9961,-91.1438 0|1:27:15,6,6:15:597:6,6:237,239:-15.1669,-0.181876,-47.5337,0,-29.6591,-47.3542 0|1:53:41,4,8:41:1614:4,8:157,324:-14.3825,-13.8166,-145.377,0,-119.863,-130.367 0|1:22:13,0,8:13:501:0,8:0,325:-23.119,-27.0324,-68.1726,0,-41.3538,-38.9456 dDocent_Contig_10112 88 . T C 161.13 . AB=0.466667;ABP=3.15506;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=63;DPB=63;DPRA=0.9375;EPP=18.2106;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.571429;PAIREDR=0.839286;PAO=0;PQA=0;PQR=0;PRO=0;QA=241;QR=1676;RO=56;RPL=7;RPP=18.2106;RPPR=124.613;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:8,7:8:210:7:241:-17.511,0,-14.6445 0/0:15:15,0:15:479:0:0:0,-4.51545,-43.4185 0/0:17:17,0:17:512:0:0:0,-5.11751,-46.3726 0/0:16:16,0:16:475:0:0:0,-4.81648,-43.0387 dDocent_Contig_10113 23 . C G 196.118 . AB=0.285714;ABP=14.1779;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=77;DPB=77;DPRA=1.71429;EPP=20.3821;EPPR=152.842;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.985507;PAO=0;PQA=0;PQR=0;PRO=0;QA=323;QR=2764;RO=69;RPL=0;RPP=20.3821;RPPR=152.842;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=69;SRP=152.842;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:20,8:20:801:8:323:-21.0097,0,-63.9783 0/0:5:5,0:5:201:0:0:0,-1.50515,-18.4709 0/0:22:22,0:22:889:0:0:0,-6.62266,-80.3174 0/0:22:22,0:22:873:0:0:0,-6.62266,-78.8813 dDocent_Contig_10114 29 . T C 33.7169 . AB=0.222222;ABP=9.04217;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X;DP=40;DPB=40;DPRA=0.870968;EPP=7.35324;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=1471;RO=38;RPL=0;RPP=7.35324;RPPR=85.5263;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:13:13,0:13:484:0:0:0,-3.91339,-43.88 0/0:14:14,0:14:563:0:0:0,-4.21442,-51.012 0/1:9:7,2:7:261:2:82:-5.07041,0,-21.1276 0/0:4:4,0:4:163:0:0:0,-1.20412,-15.0584 dDocent_Contig_10115 32 . A G 288.32 . AB=0.315789;ABP=14.2105;AC=2;AF=0.25;AN=8;AO=13;CIGAR=1X;DP=99;DPB=99;DPRA=1.2381;EPP=31.2394;EPPR=189.757;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=518;QR=3378;RO=86;RPL=0;RPP=31.2394;RPPR=189.757;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=86;SRP=189.757;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:40:39,1:39:1532:1:41:0,-7.94663,-134.027 0/1:15:8,7:8:303:7:285:-21.509,0,-23.1016 0/0:21:21,0:21:813:0:0:0,-6.32163,-73.4768 0/1:23:18,5:18:730:5:192:-10.721,0,-59.1012 dDocent_Contig_10116 26 . T G 2103.53 . AB=0.224256;ABP=291.617;AC=4;AF=0.5;AN=8;AO=98;CIGAR=1X;DP=437;DPB=437;DPRA=0;EPP=215.815;EPPR=739.139;GTI=0;LEN=1;MEANALT=1;MQM=57.0306;MQMR=59.4779;NS=4;NUMALT=1;ODDS=2.77556e-17;PAIRED=0.653061;PAIREDR=0.911504;PAO=0;PQA=0;PQR=0;PRO=0;QA=3888;QR=13577;RO=339;RPL=0;RPP=215.815;RPPR=739.139;RPR=98;RUN=1;SAF=98;SAP=215.815;SAR=0;SRF=339;SRP=739.139;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:130:115,15:115:4596:15:583:-12.5851,0,-374.172 0/1:181:124,57:124:4937:57:2271:-149.576,0,-389.663 0/1:96:76,20:76:3069:20:790:-42.2823,0,-246.465 0/1:30:24,6:24:975:6:244:-13.3079,0,-78.9522 dDocent_Contig_10117 10 . T C 18080.1 . AB=0.25308;ABP=1593.32;AC=4;AF=0.5;AN=8;AO=760;CIGAR=2M1X;DP=3003;DPB=3000.33;DPRA=0;EPP=1653.33;EPPR=4786.76;GTI=0;LEN=1;MEANALT=5.25;MQM=59.9382;MQMR=59.9782;NS=4;NUMALT=1;ODDS=0;PAIRED=0.944737;PAIREDR=0.947345;PAO=0;PQA=0;PQR=0;PRO=0;QA=30111;QR=83970;RO=2203;RPL=0;RPP=1653.33;RPPR=4786.76;RPR=760;RUN=1;SAF=760;SAP=1653.33;SAR=0;SRF=2203;SRP=4786.76;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:739:570,163:570:21732:163:6425:-356.992,0,-1733.44 0|1:814:577,218:577:22050:218:8702:-542.932,0,-1743.59 0|1:1027:739,273:739:28183:273:10793:-665.665,0,-2229.86 0|1:423:317,106:317:12005:106:4191:-249.816,0,-952.646 dDocent_Contig_10118 54 . G A 119.814 . AB=0.333333;ABP=6.62942;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=49;DPB=49;DPRA=1.32353;EPP=13.8677;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=198;QR=1757;RO=44;RPL=5;RPP=13.8677;RPPR=98.5551;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:9:9,0:9:359:0:0:0,-2.70927,-32.6732 0/0:19:19,0:19:760:0:0:0,-5.71957,-68.722 0/1:15:10,5:10:405:5:198:-13.6803,0,-32.295 0/0:6:6,0:6:233:0:0:0,-1.80618,-21.3358 dDocent_Contig_10119 209 . N G 75.9287 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=80;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:80:-7.59179,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_10120 38 . T C 2185.76 . AB=0.642857;ABP=22.8638;AC=4;AF=0.5;AN=8;AO=72;CIGAR=1X;DP=112;DPB=112;DPRA=0;EPP=159.356;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2871;QR=1595;RO=40;RPL=0;RPP=159.356;RPPR=89.8692;RPR=72;RUN=1;SAF=72;SAP=159.356;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:51:14,37:14:558:37:1489:-118.897,0,-35.209 0/1:33:16,17:16:640:17:679:-51.507,0,-48.0009 0/1:14:2,12:2:74:12:473:-38.7042,0,-2.8096 0/1:14:8,6:8:323:6:230:-16.849,0,-25.2245 dDocent_Contig_10124 34 . C T 17125.2 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=706;CIGAR=1X;DP=753;DPB=753;DPRA=0;EPP=1433.61;EPPR=61.6401;GTI=0;LEN=1;MEANALT=2.25;MQM=30.1076;MQMR=60;NS=4;NUMALT=1;ODDS=2.77556e-17;PAIRED=0.0793201;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=28231;QR=1078;RO=27;RPL=0;RPP=1536.07;RPPR=61.6401;RPR=706;RUN=1;SAF=694;SAP=1433.61;SAR=12;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:241:15,214:15:602:214:8528:-507.275,-14.7904,0 1/1:237:5,228:5:199:228:9143:-566.052,-52.1608,0 1/1:194:7,183:7:277:183:7329:-442.917,-32.1763,0 1/1:81:0,81:0:0:81:3231:-195.674,-24.3834,0 dDocent_Contig_10125 109 . C T 127.314 . AB=0.307692;ABP=11.3621;AC=2;AF=0.25;AN=8;AO=8;CIGAR=1X;DP=38;DPB=38;DPRA=2.16667;EPP=20.3821;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=259;QR=974;RO=30;RPL=0;RPP=20.3821;RPPR=68.1545;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=68.1545;SRR=30;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:6,3:6:195:3:101:-6.71433,0,-15.1594 0/0:10:10,0:10:316:0:0:0,-3.0103,-28.7477 0/1:17:12,5:12:393:5:158:-9.41474,0,-30.5691 0/0:2:2,0:2:70:0:0:0,-0.60206,-6.6474 dDocent_Contig_10126 43 . G A 291.372 . AB=0.147541;ABP=68.8308;AC=4;AF=0.5;AN=8;AO=14;CIGAR=1X;DP=76;DPB=76;DPRA=2.2;EPP=33.4109;EPPR=137.642;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=553;QR=2408;RO=62;RPL=0;RPP=33.4109;RPPR=137.642;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:5:0,5:0:0:5:195:-17.9223,-1.50515,0 0/0:10:10,0:10:396:0:0:0,-3.0103,-35.9962 0/1:39:34,5:34:1336:5:203:-6.91289,0,-108.758 0/1:22:18,4:18:676:4:155:-7.69999,0,-54.5286 dDocent_Contig_10127 43 . T C 394.395 . AB=0.405405;ABP=5.88603;AC=3;AF=0.375;AN=8;AO=15;CIGAR=1X;DP=53;DPB=53;DPRA=0.770833;EPP=35.5824;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.6;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=609;QR=1514;RO=38;RPL=0;RPP=35.5824;RPPR=85.5263;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:14,2:14:561:2:81:-2.86925,0,-46.0149 0/1:13:3,10:3:116:10:405:-32.8972,0,-6.90289 0/0:16:16,0:16:642:0:0:0,-4.81648,-58.1131 0/1:8:5,3:5:195:3:123:-9.05655,0,-15.5135 dDocent_Contig_10128 31 . C T 98.6499 . AB=0.333333;ABP=5.9056;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=40;DPB=40;DPRA=1.28571;EPP=11.6962;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.888889;PAO=0;PQA=0;PQR=0;PRO=0;QA=161;QR=1449;RO=36;RPL=0;RPP=11.6962;RPPR=81.1833;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:8,4:8:319:4:161:-11.2629,0,-25.464 0/0:13:13,0:13:526:0:0:0,-3.91339,-47.6864 0/0:9:9,0:9:358:0:0:0,-2.70927,-32.5778 0/0:6:6,0:6:246:0:0:0,-1.80618,-22.5201 dDocent_Contig_10129 98 . N A 130.655 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=5;CIGAR=1X;DP=5;DPB=5;DPRA=0;EPP=13.8677;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=137;QR=0;RO=0;RPL=5;RPP=13.8677;RPPR=0;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:4:0,4:0:0:4:130:-12.0221,-1.20412,0 1/1:1:0,1:0:0:1:7:-0.699998,-0.30103,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_10131 84 . C A 72.5394 . AB=0.166667;ABP=37.7539;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=103;DPB=103;DPRA=1.61194;EPP=16.0391;EPPR=213.643;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.989691;PAO=0;PQA=0;PQR=0;PRO=0;QA=216;QR=3504;RO=97;RPL=6;RPP=16.0391;RPPR=213.643;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=97;SRP=213.643;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:45:45,0:45:1627:0:0:0,-13.5463,-146.714 0/0:13:13,0:13:471:0:0:0,-3.91339,-42.7301 0/1:36:30,6:30:1087:6:216:-8.95291,0,-87.3028 0/0:9:9,0:9:319:0:0:0,-2.70927,-29.0496 dDocent_Contig_10132 18 . G A 2426.2 . AB=0.675214;ABP=34.209;AC=3;AF=0.375;AN=8;AO=79;CIGAR=1X;DP=143;DPB=143;DPRA=1.5;EPP=174.557;EPPR=141.985;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3138;QR=2479;RO=64;RPL=0;RPP=174.557;RPPR=141.985;RPR=79;RUN=1;SAF=79;SAP=174.557;SAR=0;SRF=64;SRP=141.985;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:26:26,0:26:988:0:0:0,-7.82678,-89.215 0/1:79:12,67:12:479:67:2679:-217.442,0,-19.6784 0/1:14:11,3:11:430:3:106:-5.67341,0,-34.8383 0/1:24:15,9:15:582:9:353:-24.9024,0,-45.4936 dDocent_Contig_10133 25 . C A 2281.87 . AB=0.808989;ABP=76.816;AC=3;AF=0.375;AN=8;AO=73;CIGAR=1X;DP=112;DPB=112;DPRA=0;EPP=161.528;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2923;QR=1533;RO=39;RPL=0;RPP=161.528;RPPR=87.6977;RPR=73;RUN=1;SAF=73;SAP=161.528;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:23:22,1:22:858:1:40:0,-2.92801,-73.5308 0/1:46:8,38:8:321:38:1513:-122.567,0,-15.4109 0/1:32:7,25:7:284:25:1004:-81.0197,0,-16.301 0/1:11:2,9:2:70:9:366:-29.9936,0,-3.33318 dDocent_Contig_10134 20 . G A 176.031 . AB=0.154762;ABP=89.9726;AC=2;AF=0.25;AN=8;AO=18;CIGAR=1X;DP=206;DPB=206;DPRA=1.06803;EPP=42.0968;EPPR=411.247;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=687;QR=7528;RO=188;RPL=0;RPP=42.0968;RPPR=411.247;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=188;SRP=411.247;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:49:49,0:49:1960:0:0:0,-14.7505,-176.59 0/0:73:68,5:68:2711:5:181:0,-5.33922,-227.472 0/1:57:47,10:47:1895:10:384:-17.7502,0,-153.587 0/1:27:24,3:24:962:3:122:-3.24468,0,-78.7509 dDocent_Contig_10136 10 . G C 227.972 . AB=0.193548;ABP=53.5846;AC=2;AF=0.25;AN=8;AO=13;CIGAR=1X;DP=91;DPB=91;DPRA=3.45833;EPP=31.2394;EPPR=172.385;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.769231;PAIREDR=0.961538;PAO=0;PQA=0;PQR=0;PRO=0;QA=531;QR=3079;RO=78;RPL=0;RPP=31.2394;RPPR=172.385;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=78;SRP=172.385;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:21:20,1:20:793:1:41:0,-2.22706,-67.5928 0/1:24:18,6:18:702:6:245:-15.2048,0,-56.2772 0/1:38:32,6:32:1258:6:245:-10.9903,0,-102.049 0/0:8:8,0:8:326:0:0:0,-2.40824,-29.7099 dDocent_Contig_10138 36 . C A 77.4977 . AB=0.142857;ABP=49.5419;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=163;DPB=163;DPRA=1.04132;EPP=16.0391;EPPR=341.76;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.897436;PAO=0;PQA=0;PQR=0;PRO=0;QA=238;QR=6261;RO=156;RPL=0;RPP=16.0391;RPPR=341.76;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=156;SRP=341.76;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:42:36,6:36:1458:6:238:-9.14771,0,-118.82 0/0:55:55,0:55:2196:0:0:0,-16.5566,-197.8 0/0:46:45,0:45:1798:0:0:0,-13.5463,-161.618 0/0:20:20,0:20:809:0:0:0,-6.0206,-73.1256 dDocent_Contig_10139 164 . G A 48.5705 . AB=0.1875;ABP=16.582;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=94;DPB=94;DPRA=0.615385;EPP=9.52472;EPPR=200.614;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=3622;RO=91;RPL=3;RPP=9.52472;RPPR=200.614;RPR=0;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=200.614;SRR=91;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:19:19,0:19:757:0:0:0,-5.71957,-68.4489 0/1:16:13,3:13:528:3:122:-6.55601,0,-43.0495 0/0:36:36,0:36:1436:0:0:0,-10.8371,-129.483 0/0:23:23,0:23:901:0:0:0,-6.92369,-81.3915 dDocent_Contig_10140 88 . G A 91.3875 . AB=0.571429;ABP=3.32051;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=66;DPB=66;DPRA=0.355932;EPP=11.6962;EPPR=137.642;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.822581;PAO=0;PQA=0;PQR=0;PRO=0;QA=140;QR=2169;RO=62;RPL=0;RPP=11.6962;RPPR=5.25182;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=35;SRP=5.25182;SRR=27;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:21:21,0:21:736:0:0:0,-6.32163,-66.5633 0/1:7:3,4:3:105:4:140:-10.8377,0,-7.68888 0/0:22:22,0:22:769:0:0:0,-6.62266,-69.5321 0/0:16:16,0:16:559:0:0:0,-4.81648,-50.6388 dDocent_Contig_10141 34 . G A 688.383 . AB=0.454545;ABP=3.99733;AC=4;AF=0.5;AN=8;AO=25;CIGAR=1X;DP=55;DPB=55;DPRA=0;EPP=57.2971;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=991;QR=1208;RO=30;RPL=0;RPP=57.2971;RPPR=68.1545;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:6,13:6:246:13:510:-40.5266,0,-16.8005 0/1:16:6,10:6:243:10:401:-31.6318,0,-17.4311 0/1:7:6,1:6:241:1:40:-1.88847,0,-19.9591 0/1:13:12,1:12:478:1:40:-0.0822893,0,-39.4576 dDocent_Contig_10142 15 . G A 223.026 . AB=0.25;ABP=29.068;AC=3;AF=0.375;AN=8;AO=13;CIGAR=1X;DP=66;DPB=66;DPRA=0;EPP=31.2394;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=495;QR=2118;RO=53;RPL=0;RPP=31.2394;RPPR=118.098;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:18:17,1:17:680:1:39:0,-1.52198,-57.6328 0/1:14:10,4:10:401:4:149:-9.55748,0,-32.2337 0/1:18:15,3:15:600:3:121:-5.86166,0,-48.9188 0/1:16:11,5:11:437:5:186:-12.2814,0,-34.8677 dDocent_Contig_10143 45 . G A 127.174 . AB=0.129032;ABP=77.1206;AC=3;AF=0.375;AN=8;AO=8;CIGAR=1X3M;DP=94;DPB=94;DPRA=0.645833;EPP=20.3821;EPPR=150.173;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.951807;PAO=0;PQA=0;PQR=0;PRO=0;QA=321;QR=3232;RO=83;RPL=0;RPP=20.3821;RPPR=183.243;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=79;SRP=150.173;SRR=4;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:25:21,3,1:21:814:3,1:115,40:-3.10487,0,-65.954,-6.12729,-63.5614,-72.6988 0|0:32:32,0,0:32:1239:0,0:0,0:0,-9.63296,-111.795,-9.63296,-111.795,-111.795 0|1:19:14,0,5:14:554:0,5:0,202:-12.8425,-17.0569,-62.645,0,-45.9895,-44.4843 0|1:18:16,0,2:16:625:0,2:0,79:-2.0787,-6.89518,-58.2721,0,-51.771,-51.1689 dDocent_Contig_10144 56 . C A 32.6891 . AB=0.1875;ABP=16.582;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=43;DPB=43;DPRA=1.18519;EPP=9.52472;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=103;QR=1616;RO=40;RPL=3;RPP=9.52472;RPPR=89.8692;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:13,3:13:526:3:103:-4.79155,0,-42.8698 0/0:19:19,0:19:769:0:0:0,-5.71957,-69.5303 ./.:.:.:.:.:.:.:. 0/0:8:8,0:8:321:0:0:0,-2.40824,-29.2576 dDocent_Contig_10145 9 . T C 1716.78 . AB=0.504065;ABP=3.02795;AC=4;AF=0.5;AN=8;AO=62;CIGAR=1X;DP=123;DPB=123;DPRA=0;EPP=137.642;EPPR=135.47;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.983871;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2386;QR=2344;RO=61;RPL=0;RPP=137.642;RPPR=135.47;RPR=62;RUN=1;SAF=62;SAP=137.642;SAR=0;SRF=61;SRP=135.47;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:53:29,24:29:1113:24:927:-67.792,0,-84.5168 0/1:31:17,14:17:657:14:539:-39.5224,0,-50.1348 0/1:29:12,17:12:457:17:647:-49.8342,0,-32.7475 0/1:10:3,7:3:117:7:273:-21.9277,0,-7.90008 dDocent_Contig_10146 53 . G A 156.665 . AB=0.166667;ABP=60.9162;AC=2;AF=0.25;AN=8;AO=11;CIGAR=1X;DP=100;DPB=100;DPRA=6.33333;EPP=26.8965;EPPR=196.271;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.707865;PAO=0;PQA=0;PQR=0;PRO=0;QA=444;QR=3532;RO=89;RPL=11;RPP=26.8965;RPPR=196.271;RPR=0;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=89;SRP=196.271;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5,0:5:196:0:0:0,-1.50515,-18.0139 0/1:26:23,3:23:883:3:120:-3.36091,0,-71.9356 0/1:34:27,7:27:1076:7:284:-15.6988,0,-86.895 0/0:35:34,1:34:1377:1:40:0,-6.54037,-120.188 dDocent_Contig_10147 15 . T C 85.4298 . AB=0.235294;ABP=13.3567;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=91;DPB=91;DPRA=0.689189;EPP=11.6962;EPPR=191.928;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=163;QR=3459;RO=87;RPL=0;RPP=11.6962;RPPR=191.928;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=87;SRP=191.928;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:13,4:13:525:4:163:-9.94092,0,-42.4792 0/0:31:31,0:31:1216:0:0:0,-9.33193,-109.71 0/0:18:18,0:18:731:0:0:0,-5.41854,-66.1146 0/0:25:25,0:25:987:0:0:0,-7.52575,-89.1285 dDocent_Contig_10148 8 . C T 2956.84 . AB=0.277533;ABP=198.175;AC=4;AF=0.5;AN=8;AO=126;CIGAR=1X;DP=454;DPB=454;DPRA=0;EPP=276.616;EPPR=715.253;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4873;QR=12544;RO=328;RPL=0;RPP=276.616;RPPR=715.253;RPR=126;RUN=1;SAF=126;SAP=276.616;SAR=0;SRF=328;SRP=715.253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:183:137,46:137:5238:46:1777:-105.094,0,-416.326 0/1:117:83,34:83:3142:34:1314:-83.3271,0,-247.719 0/1:85:56,29:56:2174:29:1123:-75.7845,0,-170.293 0/1:69:52,17:52:1990:17:659:-38.876,0,-158.566 dDocent_Contig_10149 40 . T A 3579.12 . AB=0.288066;ABP=97.8134;AC=3;AF=0.375;AN=8;AO=70;CIGAR=11M1X5M;DP=243;DPB=243.824;DPRA=0;EPP=155.013;EPPR=94.2121;GTI=0;LEN=1;MEANALT=4.75;MQM=60;MQMR=60;NS=4;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2674;QR=1623;RO=42;RPL=0;RPP=155.013;RPPR=94.2121;RPR=70;RUN=1;SAF=70;SAP=155.013;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:98:22,23,15,0,34:22:859:23,15,0,34:780,525,0,1315:-101.39,-44.7805,-108.481,-65.302,-72.698,-131.411,-108.012,-115.404,-135.927,-178.636,0,-7.40418,-27.925,-70.6363,-60.4013 0|1:100:8,15,1,54,20:8:289:15,1,54,20:503,19,2045,719:-200.309,-161.989,-181.058,-201.31,-184.167,-224.594,-35.0527,-17.9108,-57.2369,-42.387,-144.092,-126.95,-166.27,0,-161.656 0|1:34:10,0,0,8,15:10:395:0,0,8,15:0,0,253,600:-46.4618,-49.4721,-81.9837,-49.4721,-81.9837,-81.9837,-29.1538,-61.657,-61.657,-59.2488,0,-32.5423,-32.5423,-12.2291,-28.0268 0|0:11:2,1,0,6,1:2:80:1,0,6,1:39,0,217,40:-17.1489,-14.5388,-20.8412,-17.7509,-21.1422,-24.352,0,-3.41255,-6.63143,-4.82525,-14.4484,-17.8412,-21.052,-3.32087,-20.751 dDocent_Contig_10150 133 . C A 53.517 . AB=0.126214;ABP=128.007;AC=2;AF=0.25;AN=8;AO=13;CIGAR=1X;DP=211;DPB=211;DPRA=0.953704;EPP=31.2394;EPPR=428.619;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=432;QR=6335;RO=196;RPL=0;RPP=31.2394;RPPR=428.619;RPR=13;RUN=1;SAF=0;SAP=31.2394;SAR=13;SRF=0;SRP=428.619;SRR=196;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:75:67,8:67:2154:8:274:-2.41663,0,-171.541 0/0:58:57,0:57:1846:0:0:0,-17.1587,-166.082 0/0:50:50,0:50:1663:0:0:0,-15.0515,-149.953 0/1:28:22,5:22:672:5:158:-6.29328,0,-52.5605 dDocent_Contig_10151 33 . G T 32.4675 . AB=0.2;ABP=10.8276;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=27;DPB=27;DPRA=1.17647;EPP=7.35324;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=989;RO=25;RPL=0;RPP=7.35324;RPPR=57.2971;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:8,2:8:315:2:82:-4.76938,0,-25.7042 0/0:8:8,0:8:312:0:0:0,-2.40824,-28.4444 0/0:9:9,0:9:362:0:0:0,-2.70927,-32.9442 ./.:.:.:.:.:.:.:. dDocent_Contig_10152 16 . A C 1618.91 . AB=0.534884;ABP=3.91929;AC=5;AF=0.625;AN=8;AO=53;CIGAR=1X;DP=93;DPB=93;DPRA=0;EPP=118.098;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2131;QR=1588;RO=40;RPL=0;RPP=118.098;RPPR=89.8692;RPR=53;RUN=1;SAF=53;SAP=118.098;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:7:0,7:0:0:7:277:-25.2988,-2.10721,0 0/1:25:22,3:22:871:3:122:-3.84674,0,-71.1717 0/1:48:11,37:11:441:37:1487:-119.625,0,-25.5954 0/1:13:7,6:7:276:6:245:-18.5161,0,-21.2925 dDocent_Contig_10153 9 . T A 1730.89 . AB=0.439189;ABP=7.76406;AC=4;AF=0.5;AN=8;AO=65;CIGAR=1X;DP=148;DPB=148;DPRA=0;EPP=144.156;EPPR=183.243;GTI=0;LEN=1;MEANALT=1;MQM=59.5692;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2486;QR=3123;RO=83;RPL=0;RPP=144.156;RPPR=183.243;RPR=65;RUN=1;SAF=65;SAP=144.156;SAR=0;SRF=83;SRP=183.243;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:47:23,24:23:869:24:916:-68.5683,0,-64.3785 0/1:34:28,6:28:1025:6:219:-9.82597,0,-82.3117 0/1:50:25,25:25:960:25:961:-71.7517,0,-71.6609 0/1:17:7,10:7:269:10:390:-30.3412,0,-19.4567 dDocent_Contig_10154 31 . T A 537.64 . AB=0.580645;ABP=4.76149;AC=1;AF=0.125;AN=8;AO=18;CIGAR=1X;DP=83;DPB=83;DPRA=1.78846;EPP=42.0968;EPPR=144.156;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=713;QR=2618;RO=65;RPL=0;RPP=42.0968;RPPR=144.156;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=65;SRP=144.156;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:13,18:13:518:18:713:-55.1614,0,-37.6351 0/0:25:25,0:25:1016:0:0:0,-7.52575,-91.7319 0/0:26:26,0:26:1043:0:0:0,-7.82678,-94.1599 0/0:1:1,0:1:41:0:0:0,-0.30103,-4.09457 dDocent_Contig_10155 15 . T A 426.005 . AB=0.390244;ABP=7.30028;AC=2;AF=0.25;AN=8;AO=16;CIGAR=1X;DP=60;DPB=60;DPRA=2.15789;EPP=37.7539;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=640;QR=1716;RO=44;RPL=0;RPP=37.7539;RPPR=98.5551;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:14,14:14:540:14:559:-42.2241,0,-40.5107 0/0:16:16,0:16:626:0:0:0,-4.81648,-56.676 0/1:13:11,2:11:431:2:81:-3.77234,0,-35.2295 0/0:3:3,0:3:119:0:0:0,-0.90309,-11.0954 dDocent_Contig_10156 7 . A T 57.7515 . AB=0.272727;ABP=7.94546;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=45;DPB=45;DPRA=0.647059;EPP=9.52472;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=117;QR=1589;RO=42;RPL=0;RPP=9.52472;RPPR=94.2121;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:26:26,0:26:977:0:0:0,-7.82678,-88.2397 0/1:11:8,3:8:300:3:117:-7.59905,0,-24.0447 0/0:8:8,0:8:312:0:0:0,-2.40824,-28.4449 ./.:.:.:.:.:.:.:. dDocent_Contig_10157 10 . C T 341.854 . AB=0.277778;ABP=26.1727;AC=3;AF=0.375;AN=8;AO=15;CIGAR=1X;DP=68;DPB=68;DPRA=1.28571;EPP=35.5824;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=606;QR=2120;RO=53;RPL=0;RPP=35.5824;RPPR=118.098;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:14:14,0:14:573:0:0:0,-4.21442,-51.9113 0/1:19:17,2:17:682:2:81:-1.96616,0,-55.9897 0/1:7:6,1:6:242:1:38:-1.69006,0,-20.0492 0/1:28:16,12:16:623:12:487:-35.7528,0,-47.9705 dDocent_Contig_10158 27 . A G 54.9714 . AB=0.153846;ABP=30.0702;AC=2;AF=0.25;AN=8;AO=6;CIGAR=1X;DP=73;DPB=73;DPRA=1.1875;EPP=16.0391;EPPR=148.499;GTI=0;LEN=1;MEANALT=1;MQM=54;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=242;QR=2679;RO=67;RPL=0;RPP=16.0391;RPPR=148.499;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=67;SRP=148.499;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:10,3:10:402:3:120:-6.89341,0,-32.6261 0/1:13:12,1:12:482:1:41:-0.181177,0,-39.8169 0/0:31:29,2:29:1149:2:81:0,-1.68235,-96.0429 0/0:16:16,0:16:646:0:0:0,-4.81648,-58.4745 dDocent_Contig_10159 9 . T C 5076.73 . AB=0.0821918;ABP=224.382;AC=0;AF=0;AN=8;AO=12;CIGAR=1X1M2X4M;DP=261;DPB=261;DPRA=0;EPP=29.068;EPPR=81.1833;GTI=0;LEN=1;MEANALT=6;MQM=60;MQMR=60;NS=4;NUMALT=5;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=475;QR=1399;RO=36;RPL=0;RPP=29.068;RPPR=81.1833;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:65:13,0,0,0,10,42:13:508:0,0,0,10,42:0,0,0,389,1643:-131.162,-135.075,-176.84,-135.075,-176.84,-176.84,-135.075,-176.84,-176.84,-176.84,-103.106,-144.871,-144.871,-144.871,-141.861,0,-41.7656,-41.7656,-41.7656,-9.79743,-29.1223 0|0:50:13,0,2,0,7,25:13:504:0,2,0,7,25:0,79,0,269,998:-78.2973,-82.2107,-123.614,-75.7095,-117.113,-116.511,-82.2107,-123.614,-117.113,-123.614,-60.1289,-101.532,-95.0307,-101.532,-99.4246,0,-41.4125,-34.9102,-41.4125,-19.3275,-33.8867 0|0:80:8,8,6,6,23,27:8:310:8,6,6,23,27:314,238,237,888,1088:-134.731,-111.315,-134.374,-117.548,-117.19,-141.209,-117.637,-117.279,-123.512,-141.298,-64.215,-63.8571,-70.0897,-70.179,-82.7578,-47.4581,-47.1001,-53.3331,-53.4223,0,-64.798 0|0:66:2,0,1,6,23,33:2:77:0,1,6,23,33:0,40,238,874,1291:-170.88,-171.482,-177.804,-168.187,-174.509,-174.208,-151.889,-158.211,-154.916,-156.405,-99.8104,-106.132,-102.837,-86.5393,-99.2085,-65.3437,-71.6659,-68.3703,-52.0711,0,-61.7319 dDocent_Contig_10160 159 . T C 589.218 . AB=0.385965;ABP=9.44853;AC=3;AF=0.375;AN=8;AO=22;CIGAR=1X;DP=66;DPB=66;DPRA=2.11111;EPP=50.7827;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=873;QR=1739;RO=44;RPL=22;RPP=50.7827;RPPR=98.5551;RPR=0;RUN=1;SAF=0;SAP=50.7827;SAR=22;SRF=0;SRP=98.5551;SRR=44;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:3,7:3:120:7:285:-23.0141,0,-8.17739 0/1:38:24,14:24:949:14:560:-39.3043,0,-74.2726 0/0:9:9,0:9:359:0:0:0,-2.70927,-32.6727 0/1:9:8,1:8:311:1:28:-0.0904566,0,-25.6412 dDocent_Contig_10161 29 . T C 78.0848 . AB=0.0930233;ABP=64.872;AC=0;AF=0;AN=8;AO=5;CIGAR=1X2M1I2M;DP=109;DPB=112;DPRA=1.53488;EPP=13.8677;EPPR=200.614;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0.956044;PAO=0;PQA=0;PQR=0;PRO=0;QA=191;QR=3614;RO=91;RPL=0;RPP=13.8677;RPPR=200.614;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=91;SRP=200.614;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:43:31,4,6:31:1222:4,6:154,226:-9.20641,-5.88103,-105.251,0,-87.937,-98.7744 0|0:31:28,0,2:28:1124:0,2:0,77:0,-8.42884,-101.085,-2.05015,-94.7637,-94.1616 0|0:23:21,1,0:21:829:1,0:37,0:0,-3.27467,-71.2464,-6.32163,-71.5474,-74.5735 0|0:12:11,0,0:11:439:0,0:0,0:0,-3.31133,-39.4937,-3.31133,-39.4937,-39.4937 dDocent_Contig_10162 8 . C A 1099.21 . AB=0.387387;ABP=15.2371;AC=4;AF=0.5;AN=8;AO=43;CIGAR=1X1M1X3M2X;DP=111;DPB=111;DPRA=0;EPP=96.3836;EPPR=146.327;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1659;QR=2568;RO=66;RPL=0;RPP=96.3836;RPPR=146.327;RPR=43;RUN=1;SAF=43;SAP=96.3836;SAR=0;SRF=66;SRP=146.327;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:33:24,9:24:930:9:350:-21.9255,0,-74.078 0|1:37:16,20:16:631:20:758:-57.3228,0,-45.9113 0|1:25:16,9:16:617:9:353:-24.6048,0,-48.342 0|1:16:10,5:10:390:5:198:-13.4664,0,-30.7432 dDocent_Contig_10163 36 . A T 2178.96 . AB=0.389163;ABP=24.6715;AC=4;AF=0.5;AN=8;AO=79;CIGAR=1X;DP=203;DPB=203;DPRA=0;EPP=174.557;EPPR=270.101;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=0.0379747;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3166;QR=4910;RO=123;RPL=0;RPP=174.557;RPPR=270.101;RPR=79;RUN=1;SAF=79;SAP=174.557;SAR=0;SRF=123;SRP=270.101;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:59:41,18:41:1636:18:730:-48.2631,0,-129.712 0/1:78:49,28:49:1958:28:1126:-78.3423,0,-153.147 0/1:32:15,17:15:587:17:683:-52.1677,0,-43.529 0/1:34:18,16:18:729:16:627:-46.5213,0,-55.6995 dDocent_Contig_10164 9 . T A 774.453 . AB=0.320388;ABP=31.8719;AC=4;AF=0.5;AN=8;AO=33;CIGAR=1X;DP=103;DPB=103;DPRA=0;EPP=74.6689;EPPR=155.013;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1271;QR=2703;RO=70;RPL=0;RPP=74.6689;RPPR=155.013;RPR=33;RUN=1;SAF=33;SAP=74.6689;SAR=0;SRF=70;SRP=155.013;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:52:30,22:30:1154:22:844:-60.6294,0,-88.5064 0/1:20:14,6:14:542:6:234:-15.4105,0,-43.1052 0/1:25:22,3:22:853:3:115:-3.19914,0,-69.5665 0/1:6:4,2:4:154:2:78:-5.59729,0,-12.4273 dDocent_Contig_10165 8 . C T 147.957 . AB=0.4;ABP=4.31318;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X3M1D9M;DP=87;DPB=86.5714;DPRA=0.625;EPP=16.0391;EPPR=176.728;GTI=0;LEN=1;MEANALT=2;MQM=51;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.5;PAIREDR=0.9875;PAO=0;PQA=0;PQR=0;PRO=0;QA=231;QR=3158;RO=80;RPL=0;RPP=16.0391;RPPR=176.728;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=80;SRP=176.728;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:15:8,6:8:316:6:231:-16.1937,0,-24.3883 0|0:27:27,0:27:1070:0:0:0,-8.12781,-96.598 0|0:23:23,0:23:901:0:0:0,-6.92369,-81.4029 0|0:22:22,0:22:871:0:0:0,-6.62266,-78.7058 dDocent_Contig_10166 160 . A C 168.278 . AB=0.35;ABP=6.91895;AC=2;AF=0.25;AN=8;AO=8;CIGAR=1X;DP=76;DPB=76;DPRA=0.818182;EPP=7.35324;EPPR=142.112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=324;QR=2553;RO=68;RPL=6;RPP=7.35324;RPPR=142.112;RPR=2;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=150.67;SRR=68;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:22:22,0:22:858:0:0:0,-6.62266,-77.5389 0/0:34:33,1:33:1229:1:41:0,-6.14045,-106.801 0/1:12:8,4:8:309:4:163:-11.4461,0,-24.5563 0/1:8:5,3:5:157:3:120:-8.77966,0,-12.0242 dDocent_Contig_10167 54 . T G 72.981 . AB=0.192308;ABP=24.391;AC=2;AF=0.25;AN=8;AO=6;CIGAR=1X;DP=42;DPB=42;DPRA=13.6667;EPP=16.0391;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=238;QR=1431;RO=36;RPL=6;RPP=16.0391;RPPR=81.1833;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:14,2:14:545:2:79:-2.68115,0,-44.5652 0/1:10:7,3:7:283:3:118:-7.9919,0,-22.8333 0/0:15:14,1:14:567:1:41:0,-0.420883,-47.2785 0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827 dDocent_Contig_10168 98 . N A 116.027 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=3;CIGAR=1M3I1M10X;DP=3;DPB=3.75;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0.333333;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=117;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. 1|1:1:0,1:0:0:1:39:-3.89656,-0.30103,0 .:.:.:.:.:.:.:. 1|1:2:0,2:0:0:2:78:-7.40347,-0.60206,0 dDocent_Contig_10169 209 . N G 270.355 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=7;CIGAR=1X;DP=7;DPB=7;DPRA=0;EPP=18.2106;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=282;QR=0;RO=0;RPL=7;RPP=18.2106;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:79:-7.49763,-0.60206,0 ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:121:-11.2802,-0.90309,0 1/1:2:0,2:0:0:2:82:-7.77968,-0.60206,0 dDocent_Contig_10170 7 . A T 3111.27 . AB=0.125;ABP=22.5536;AC=0;AF=0;AN=8;AO=2;CIGAR=1X3M1X;DP=159;DPB=159;DPRA=0;EPP=7.35324;EPPR=102.898;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=77;QR=1781;RO=46;RPL=0;RPP=7.35324;RPPR=102.898;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:54:15,0,39,0:15:579:0,39,0:0,1530,0:-121.682,-126.198,-173.748,0,-47.9375,-36.1974,-126.198,-173.748,-47.9375,-173.748 0|0:50:18,0,31,0:18:696:0,31,0:0,1259,0:-98.5213,-103.94,-161.103,0,-57.2512,-47.9193,-103.94,-161.103,-57.2512,-161.103 0|0:39:10,0,20,9:10:389:0,20,9:0,807,364:-63.5107,-66.521,-98.4867,0,-31.9614,-25.9408,-36.5098,-68.4744,-1.94317,-65.7651 0|0:16:3,2,11,0:3:117:2,11,0:77,434,0:-34.8098,-29.3919,-38.4065,0,-3.30021,-6.30928,-35.7129,-39.0086,-9.62061,-45.3299 dDocent_Contig_10171 4 . T C 1313.65 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=65;CIGAR=6I1X2M1X;DP=66;DPB=165;DPRA=0;EPP=144.156;EPPR=0;GTI=0;LEN=1;MEANALT=1.25;MQM=28.2769;MQMR=0;NS=4;NUMALT=1;ODDS=2.1684e-19;PAIRED=0.338462;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=2242;QR=0;RO=0;RPL=0;RPP=144.156;RPPR=0;RPR=65;RUN=1;SAF=65;SAP=144.156;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:22:0,22:0:0:22:749:-40.4296,-6.62266,0 1|1:31:0,30:0:0:30:1049:-66.149,-9.0309,0 1|1:7:0,7:0:0:7:243:-13.4263,-2.10721,0 1|1:6:0,6:0:0:6:201:-10.7577,-1.80618,0 dDocent_Contig_10172 19 . A G 244.259 . AB=0.285714;ABP=16.9698;AC=1;AF=0.125;AN=8;AO=10;CIGAR=1X;DP=80;DPB=80;DPRA=2.33333;EPP=24.725;EPPR=155.013;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=400;QR=2683;RO=70;RPL=0;RPP=24.725;RPPR=155.013;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=70;SRP=155.013;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:35:25,10:25:978:10:400:-25.8238,0,-77.79 0/0:14:14,0:14:522:0:0:0,-4.21442,-47.3138 0/0:20:20,0:20:751:0:0:0,-6.0206,-67.9025 0/0:11:11,0:11:432:0:0:0,-3.31133,-39.2335 dDocent_Contig_10173 26 . G A 1087.71 . AB=0.217021;ABP=166.462;AC=2;AF=0.25;AN=8;AO=51;CIGAR=1X;DP=392;DPB=392;DPRA=1.49682;EPP=113.755;EPPR=726.212;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.0392157;PAIREDR=0.870968;PAO=0;PQA=0;PQR=0;PRO=0;QA=2026;QR=13535;RO=341;RPL=0;RPP=113.755;RPPR=743.482;RPR=51;RUN=1;SAF=51;SAP=113.755;SAR=0;SRF=339;SRP=726.212;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:163:124,39:124:4885:39:1574:-92.8241,0,-390.476 0/1:72:60,12:60:2390:12:452:-19.3446,0,-193.585 0/0:103:103,0:103:4107:0:0:0,-31.0061,-369.607 0/0:54:54,0:54:2153:0:0:0,-16.2556,-193.948 dDocent_Contig_10174 111 . G T 199.083 . AB=0.317073;ABP=14.9269;AC=3;AF=0.375;AN=8;AO=13;CIGAR=1X;DP=56;DPB=56;DPRA=0.911111;EPP=31.2394;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=408;QR=1454;RO=43;RPL=0;RPP=31.2394;RPPR=96.3836;RPR=13;RUN=1;SAF=0;SAP=31.2394;SAR=13;SRF=0;SRP=96.3836;SRR=43;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:16,6:16:538:6:181:-9.96298,0,-42.1181 0/1:7:4,3:4:134:3:87:-6.01073,0,-10.2837 0/0:15:15,0:15:504:0:0:0,-4.51545,-45.6809 0/1:12:8,4:8:278:4:140:-9.33257,0,-21.7456 dDocent_Contig_10175 48 . T A 701.178 . AB=0.127434;ABP=684.203;AC=3;AF=0.375;AN=8;AO=102;CIGAR=1X;DP=927;DPB=927;DPRA=0;EPP=215.9;EPPR=1762;GTI=0;LEN=1;MEANALT=1.75;MQM=59.4608;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.715686;PAIREDR=0.83455;PAO=0;PQA=0;PQR=0;PRO=0;QA=3887;QR=26843;RO=822;RPL=1;RPP=215.9;RPPR=1762;RPR=101;RUN=1;SAF=102;SAP=224.5;SAR=0;SRF=822;SRP=1787.96;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:362:331,30:331:10894:30:1172:0,-3.08633,-874.76 0/1:256:231,25:231:7364:25:945:-8.27403,0,-585.784 0/1:205:181,23:181:5980:23:859:-16.1185,0,-476.845 0/1:104:79,24:79:2605:24:911:-51.1232,0,-203.524 dDocent_Contig_10176 9 . T C 1578.18 . AB=0.318627;ABP=61.2994;AC=4;AF=0.5;AN=8;AO=65;CIGAR=1X;DP=204;DPB=204;DPRA=0;EPP=144.156;EPPR=304.845;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.753846;PAIREDR=0.906475;PAO=0;PQA=0;PQR=0;PRO=0;QA=2503;QR=5313;RO=139;RPL=0;RPP=144.156;RPPR=304.845;RPR=65;RUN=1;SAF=65;SAP=144.156;SAR=0;SRF=139;SRP=304.845;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:47:36,11:36:1380:11:423:-24.2748,0,-110.335 0/1:81:61,20:61:2347:20:775:-45.6948,0,-187.058 0/1:46:23,23:23:877:23:879:-65.5829,0,-65.4007 0/1:30:19,11:19:709:11:426:-29.6638,0,-55.1022 dDocent_Contig_10177 13 . A G 377.125 . AB=0.481481;ABP=3.09072;AC=1;AF=0.125;AN=8;AO=15;CIGAR=1X;DP=75;DPB=75;DPRA=2.57143;EPP=35.5824;EPPR=133.299;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=600;QR=2385;RO=60;RPL=0;RPP=35.5824;RPPR=133.299;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:14,13:14:568:13:521:-39.1099,0,-43.3344 0/0:19:19,0:19:769:0:0:0,-5.71957,-69.5308 0/0:27:25,2:25:969:2:79:0,-0.630565,-80.0023 0/0:2:2,0:2:79:0:0:0,-0.60206,-7.49724 dDocent_Contig_10178 135 . C T 38.8057 . AB=0.166667;ABP=31.9633;AC=3;AF=0.375;AN=8;AO=5;CIGAR=1X;DP=40;DPB=40;DPRA=1;EPP=13.8677;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.970588;PAO=0;PQA=0;PQR=0;PRO=0;QA=185;QR=1231;RO=34;RPL=0;RPP=13.8677;RPPR=76.8404;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=76.8404;SRR=34;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:10:10,0:10:381:0:0:0,-3.0103,-34.6443 0/1:6:5,1:5:143:1:32:-1.39313,0,-11.3403 0/1:15:13,2:13:477:2:76:-2.69936,0,-38.7519 0/1:9:6,2:6:230:2:77:-4.53279,0,-18.2953 dDocent_Contig_10179 127 . T C 440.052 . AB=0.487179;ABP=3.06598;AC=3;AF=0.375;AN=8;AO=19;CIGAR=1X;DP=61;DPB=61;DPRA=0.590909;EPP=44.2683;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=647;QR=1355;RO=42;RPL=0;RPP=44.2683;RPPR=94.2121;RPR=19;RUN=1;SAF=0;SAP=44.2683;SAR=19;SRF=0;SRP=94.2121;SRR=42;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:22:22,0:22:717:0:0:0,-6.62266,-64.8336 0/1:19:6,13:6:209:13:442:-34.3867,0,-13.4315 0/1:2:1,1:1:7:1:35:-2.89657,0,-0.0979383 0/1:18:13,5:13:422:5:170:-10.2163,0,-32.872 dDocent_Contig_10180 107 . N A 354.365 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=13;CIGAR=1X;DP=13;DPB=13;DPRA=0;EPP=31.2394;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=379;QR=0;RO=0;RPL=0;RPP=31.2394;RPPR=0;RPR=13;RUN=1;SAF=0;SAP=31.2394;SAR=13;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:4:0,4:0:0:4:123:-11.3737,-1.20412,0 1/1:5:0,5:0:0:5:173:-15.9102,-1.50515,0 1/1:4:0,4:0:0:4:83:-7.67522,-1.20412,0 dDocent_Contig_10181 139 . A T 113.26 . AB=0.263158;ABP=12.2676;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=108;DPB=108;DPRA=1.16;EPP=20.3821;EPPR=220.158;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=326;QR=3991;RO=100;RPL=0;RPP=20.3821;RPPR=220.158;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=220.158;SRR=100;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:39:36,3:36:1414:3:122:0,-0.367677,-116.135 0/1:19:14,5:14:571:5:204:-13.0245,0,-46.0123 0/0:11:11,0:11:440:0:0:0,-3.31133,-39.9551 0/0:39:39,0:39:1566:0:0:0,-11.7402,-141.177 dDocent_Contig_10183 138 . T C 72.5256 . AB=0.188679;ABP=47.6279;AC=2;AF=0.25;AN=8;AO=11;CIGAR=1X;DP=107;DPB=107;DPRA=0.987654;EPP=7.94546;EPPR=211.472;GTI=0;LEN=1;MEANALT=1;MQM=30.7273;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=421;QR=3564;RO=96;RPL=0;RPP=26.8965;RPPR=211.472;RPR=11;RUN=1;SAF=3;SAP=7.94546;SAR=8;SRF=0;SRP=211.472;SRR=96;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:47:40,7:40:1461:7:278:-3.8667,0,-117.613 0/0:27:26,1:26:985:1:39:0,-4.77331,-85.6071 0/0:27:27,0:27:1003:0:0:0,-8.12781,-90.5722 0/1:6:3,3:3:115:3:104:-6.78232,0,-8.91871 dDocent_Contig_10184 139 . A G 474.229 . AB=0.293333;ABP=30.8341;AC=4;AF=0.5;AN=8;AO=22;CIGAR=1X2M;DP=75;DPB=75;DPRA=0;EPP=50.7827;EPPR=113.755;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=841;QR=1681;RO=51;RPL=0;RPP=50.7827;RPPR=113.755;RPR=22;RUN=1;SAF=0;SAP=50.7827;SAR=22;SRF=0;SRP=113.755;SRR=51;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:23:16,2,5:16:534:2,5:69,187:-10.5125,-9.73351,-52.3213,0,-37.6055,-41.7053 0|1:24:15,0,9:15:504:0,9:0,345:-24.1768,-28.6923,-69.488,0,-41.1611,-38.4518 0|1:17:14,0,3:14:477:0,3:0,120:-6.0698,-10.2842,-48.9308,0,-39.0357,-38.1326 0|1:11:6,0,5:6:166:0,5:0,189:-14.0617,-15.8678,-28.9433,0,-13.4071,-11.902 dDocent_Contig_10185 9 . G A 2385.16 . AB=0.332031;ABP=65.7455;AC=4;AF=0.5;AN=8;AO=85;CIGAR=1M3I2M4D4M;DP=256;DPB=251.091;DPRA=0;EPP=187.585;EPPR=200.614;GTI=0;LEN=1;MEANALT=4.75;MQM=59.5412;MQMR=60;NS=4;NUMALT=4;ODDS=0;PAIRED=0.576471;PAIREDR=0.538462;PAO=0;PQA=0;PQR=0;PRO=0;QA=3325;QR=3532;RO=91;RPL=0;RPP=187.585;RPPR=200.614;RPR=85;RUN=1;SAF=85;SAP=187.585;SAR=0;SRF=91;SRP=200.614;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:100:42,5,32,15,3:42:1626:5,32,15,3:197,1254,592,120:-90.3781,-86.8171,-218.879,0,-117.364,-123.936,-54.327,-171.69,-84.874,-183.379,-93.1357,-210.498,-123.683,-178.009,-225.799 0|1:86:26,10,28,13,5:26:1011:10,28,13,5:398,1084,497,201:-81.1937,-56.2464,-136.316,0,-50.3044,-74.6495,-48.329,-98.6342,-42.3872,-127.494,-72.4552,-122.761,-66.5131,-114.843,-154.03 0|1:46:11,3,20,3,9:11:425:3,20,3,9:117,788,119,339:-61.5218,-55.2159,-89.2178,0,-25.2892,-28.8864,-55.0364,-80.3242,-25.1094,-89.0385,-37.068,-62.3545,-7.14176,-62.1751,-69.2623 0|1:24:12,5,5,0,2:12:470:5,5,0,2:195,199,0,81:-12.7754,-0.363341,-37.5013,0,-22.6191,-37.1415,-16.3877,-39.0064,-38.6467,-55.034,-9.70677,-32.3261,-31.9661,-48.3538,-47.7518 dDocent_Contig_10186 115 . T A 142.471 . AB=0.217391;ABP=34.9215;AC=3;AF=0.5;AN=6;AO=10;CIGAR=1X;DP=46;DPB=46;DPRA=0;EPP=24.725;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=357;QR=1282;RO=36;RPL=0;RPP=24.725;RPPR=81.1833;RPR=10;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=81.1833;SRR=36;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:15,4:15:534:4:144:-7.59396,0,-42.6748 ./.:.:.:.:.:.:.:. 0/1:17:15,2:15:536:2:71:-1.62455,0,-43.4576 0/1:10:6,4:6:212:4:142:-10.119,0,-16.4145 dDocent_Contig_10187 156 . G A 58.6018 . AB=0.166667;ABP=26.1727;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=65;DPB=65;DPRA=1.7561;EPP=11.6962;EPPR=135.47;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=160;QR=2446;RO=61;RPL=0;RPP=11.6962;RPPR=135.47;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=135.47;SRR=61;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:22:22,0:22:883:0:0:0,-6.62266,-79.7814 0/1:24:20,4:20:804:4:160:-7.55908,0,-65.4536 0/0:15:15,0:15:602:0:0:0,-4.51545,-54.5196 0/0:4:4,0:4:157:0:0:0,-1.20412,-14.5086 dDocent_Contig_10188 9 . G T 3345.28 . AB=0.460377;ABP=6.62396;AC=4;AF=0.5;AN=8;AO=122;CIGAR=1X;DP=265;DPB=265;DPRA=0;EPP=267.93;EPPR=309.188;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.770492;PAIREDR=0.829787;PAO=0;PQA=0;PQR=0;PRO=0;QA=4670;QR=5413;RO=141;RPL=0;RPP=267.93;RPPR=309.188;RPR=122;RUN=1;SAF=122;SAP=267.93;SAR=0;SRF=141;SRP=309.188;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:119:59,59:59:2274:59:2254:-167.441,0,-169.24 0/1:46:33,12:33:1258:12:462:-28.1047,0,-99.6946 0/1:67:32,35:32:1220:35:1344:-101.076,0,-89.9271 0/1:33:17,16:17:661:16:610:-45.3036,0,-49.8932 dDocent_Contig_10189 23 . T A 486.861 . AB=0.0869565;ABP=37.093;AC=4;AF=0.5;AN=8;AO=2;CIGAR=2X4M;DP=168;DPB=168;DPRA=0;EPP=7.35324;EPPR=244.044;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=4;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=4325;RO=111;RPL=0;RPP=7.35324;RPPR=244.044;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=111;SRP=244.044;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:66:34,5,8,13,0:34:1316:5,8,13,0:191,298,508,0:-31.5288,-26.2489,-132.831,-17.375,-109.946,-123.053,0,-92.5767,-83.7016,-104.178,-41.7638,-134.336,-125.461,-108.092,-149.852 0|1:45:33,8,0,2,0:33:1299:8,0,2,0:317,0,70,0:-15.6665,0,-104.501,-25.6005,-106.909,-132.474,-19.9094,-101.216,-126.781,-126.179,-25.6005,-106.909,-132.474,-126.781,-132.474 0|1:34:27,1,5,1,0:27:1055:1,5,1,0:41,183,40,0:-6.80357,-11.7311,-98.1729,0,-83.526,-85.2186,-11.632,-95.1785,-83.4284,-98.0753,-14.9314,-98.474,-86.7238,-98.3763,-101.672 0|1:23:17,1,0,2,2:17:655:1,0,2,2:34,0,82,81:-1.68064,-5.52283,-59.0009,-6.79815,-59.3019,-60.6024,0,-52.5313,-53.831,-53.229,-0.0914715,-52.6208,-53.9205,-47.1485,-53.3185 dDocent_Contig_10190 127 . G A 130.779 . AB=0.191176;ABP=59.3408;AC=3;AF=0.375;AN=8;AO=13;CIGAR=1X;DP=83;DPB=83;DPRA=1.51111;EPP=31.2394;EPPR=155.013;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=422;QR=2428;RO=70;RPL=0;RPP=31.2394;RPPR=155.013;RPR=13;RUN=1;SAF=0;SAP=31.2394;SAR=13;SRF=0;SRP=155.013;SRR=70;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:29,7:29:957:7:234:-10.5506,0,-75.5844 0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9357 0/1:8:6,2:6:213:2:68:-4.04947,0,-17.1075 0/1:24:20,4:20:718:4:120:-3.87329,0,-57.7229 dDocent_Contig_10191 1 . N G 139.25 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=59;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0.75;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=144;QR=0;RO=0;RPL=0;RPP=11.6962;RPPR=0;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1:0,1:0:0:1:29:-2.89914,-0.30103,0 1/1:3:0,3:0:0:3:115:-10.7232,-0.90309,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_10193 21 . A G 1379.59 . AB=0.290476;ABP=83.0859;AC=4;AF=0.5;AN=8;AO=61;CIGAR=1X1M;DP=210;DPB=210;DPRA=0;EPP=135.47;EPPR=309.188;GTI=0;LEN=1;MEANALT=1.25;MQM=46.082;MQMR=59.8156;NS=4;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0.822695;PAO=0;PQA=0;PQR=0;PRO=0;QA=2346;QR=5463;RO=141;RPL=0;RPP=135.47;RPPR=309.188;RPR=61;RUN=1;SAF=61;SAP=135.47;SAR=0;SRF=141;SRP=309.188;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:77:55,0,22:55:2140:0,22:0,855:-52.4371,-68.9938,-244.741,0,-176.13,-169.507 0|1:59:36,8,15:36:1376:8,15:313,571:-33.7977,-19.774,-130.269,0,-88.0377,-108.377 0|1:49:35,0,14:35:1365:0,14:0,538:-32.8551,-43.3912,-155.594,0,-112.582,-108.368 0|1:25:15,0,10:15:582:0,10:0,382:-26.2667,-30.7822,-78.5952,0,-48.1909,-45.1806 dDocent_Contig_10194 19 . C T 70.755 . AB=0.16129;ABP=33.9012;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=156;DPB=156;DPRA=1.05263;EPP=16.0391;EPPR=303.195;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.2533;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.873333;PAO=0;PQA=0;PQR=0;PRO=0;QA=238;QR=5963;RO=150;RPL=0;RPP=16.0391;RPPR=328.731;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=147;SRP=303.195;SRR=3;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:49:48,1:48:1907:1:41:0,-10.6559,-167.739 0/0:25:25,0:25:1008:0:0:0,-7.52575,-91.0152 0/0:51:51,0:51:2009:0:0:0,-15.3525,-177.83 0/1:31:26,5:26:1039:5:197:-8.77447,0,-84.4739 dDocent_Contig_10195 33 . A G 89.0698 . AB=0.105263;ABP=260.158;AC=3;AF=0.375;AN=8;AO=20;CIGAR=1X;DP=235;DPB=235;DPRA=1.40741;EPP=46.4397;EPPR=469.877;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.55;PAIREDR=0.604651;PAO=0;PQA=0;PQR=0;PRO=0;QA=761;QR=8341;RO=215;RPL=0;RPP=46.4397;RPPR=469.877;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=215;SRP=469.877;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:78:71,7:71:2774:7:264:-0.629794,0,-226.317 0/0:45:45,0:45:1772:0:0:0,-13.5463,-159.705 0/1:79:69,10:69:2653:10:378:-10.586,0,-215.144 0/1:33:30,3:30:1142:3:119:-1.16102,0,-93.1253 dDocent_Contig_10196 58 . A G 37.7592 . AB=0.591837;ABP=6.59988;AC=2;AF=0.25;AN=8;AO=52;CIGAR=1X;DP=127;DPB=127;DPRA=0;EPP=115.927;EPPR=157.301;GTI=0;LEN=1;MEANALT=1;MQM=7.96154;MQMR=58.4933;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.706667;PAO=0;PQA=0;PQR=0;PRO=0;QA=1614;QR=2462;RO=75;RPL=0;RPP=115.927;RPPR=157.301;RPR=52;RUN=1;SAF=0;SAP=115.927;SAR=52;SRF=73;SRP=148.962;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:26:22,4:22:711:4:134:0,-5.0557,-60.504 0/0:52:33,19:33:1104:19:603:0,-3.35965,-87.2021 0/1:26:11,15:11:354:15:421:-1.77751,0,-24.3464 0/1:23:9,14:9:293:14:456:-5.4142,0,-19.7648 dDocent_Contig_10197 21 . A G 7706.4 . AB=0.399449;ABP=66.7666;AC=4;AF=0.5;AN=8;AO=290;CIGAR=1X1M5X;DP=726;DPB=726;DPRA=0;EPP=598.473;EPPR=835.223;GTI=0;LEN=1;MEANALT=5.5;MQM=56.0172;MQMR=60;NS=4;NUMALT=1;ODDS=5.55112e-17;PAIRED=0.172414;PAIREDR=0.404467;PAO=0;PQA=0;PQR=0;PRO=0;QA=11135;QR=15676;RO=403;RPL=0;RPP=632.737;RPPR=878.114;RPR=290;RUN=1;SAF=286;SAP=598.473;SAR=4;SRF=398;SRP=835.223;SRR=5;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:194:103,87:103:4011:87:3279:-236.675,0,-303.513 0|1:197:84,94:84:3288:94:3649:-270.454,0,-242.134 0|1:218:134,78:134:5249:78:2994:-197.062,0,-408.197 0|1:117:82,31:82:3128:31:1213:-73.8481,0,-247.237 dDocent_Contig_10198 8 . C T 138.304 . AB=0.315789;ABP=8.61041;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=83;DPB=83;DPRA=0.890625;EPP=16.0391;EPPR=168.042;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=56.8158;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.657895;PAO=0;PQA=0;PQR=0;PRO=0;QA=232;QR=2964;RO=76;RPL=0;RPP=16.0391;RPPR=168.042;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=76;SRP=168.042;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:17:17,0:17:679:0:0:0,-5.11751,-59.3136 0/0:21:20,0:20:774:0:0:0,-6.0206,-69.3628 0/0:26:26,0:26:1003:0:0:0,-7.82678,-89.7973 0/1:19:13,6:13:508:6:232:-15.5294,0,-40.2964 dDocent_Contig_10199 119 . A G 240.708 . AB=0.1875;ABP=98.0122;AC=4;AF=0.5;AN=8;AO=21;CIGAR=1X;DP=112;DPB=112;DPRA=0;EPP=48.6112;EPPR=200.614;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=709;QR=3030;RO=91;RPL=0;RPP=48.6112;RPPR=200.614;RPR=21;RUN=1;SAF=0;SAP=48.6112;SAR=21;SRF=0;SRP=200.614;SRR=91;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:15,4:15:507:4:137:-6.94864,0,-40.2334 0/1:34:30,4:30:971:4:137:-2.43319,0,-77.4486 0/1:29:24,5:24:820:5:172:-7.08845,0,-65.3861 0/1:30:22,8:22:732:8:263:-14.9601,0,-57.1605 dDocent_Contig_10200 63 . G C 2574.09 . AB=0.547059;ABP=6.28028;AC=4;AF=0.5;AN=8;AO=93;CIGAR=1X;DP=170;DPB=170;DPRA=0;EPP=204.957;EPPR=170.214;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=0.946237;PAIREDR=0.987013;PAO=0;PQA=0;PQR=0;PRO=0;QA=3497;QR=2919;RO=77;RPL=93;RPP=204.957;RPPR=170.214;RPR=0;RUN=1;SAF=93;SAP=204.957;SAR=0;SRF=77;SRP=170.214;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:46:22,24:22:844:24:915:-68.8186,0,-62.4319 0/1:51:32,19:32:1218:19:701:-48.0553,0,-94.5639 0/1:47:13,34:13:479:34:1294:-102.6,0,-29.298 0/1:26:10,16:10:378:16:587:-45.3329,0,-26.5467 dDocent_Contig_10201 125 . G A 42.4184 . AB=0.206897;ABP=24.6501;AC=2;AF=0.25;AN=8;AO=6;CIGAR=1X;DP=45;DPB=45;DPRA=1.8125;EPP=16.0391;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=175;QR=1306;RO=39;RPL=0;RPP=16.0391;RPPR=87.6977;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=87.6977;SRR=39;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:4:2,2:2:63:2:65:-4.96917,0,-4.77932 0/0:7:7,0:7:212:0:0:0,-2.10721,-19.3763 0/0:9:9,0:9:315:0:0:0,-2.70927,-28.6888 0/1:25:21,4:21:716:4:110:-2.64646,0,-57.2321 dDocent_Contig_10202 12 . A G 608.719 . AB=0.219512;ABP=59.0449;AC=2;AF=0.25;AN=8;AO=18;CIGAR=1M1X1M;DP=146;DPB=138.333;DPRA=0;EPP=42.0968;EPPR=231.015;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=672;QR=3913;RO=105;RPL=0;RPP=42.0968;RPPR=231.015;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=105;SRP=231.015;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:52:40,12,0:40:1512:12,0:459,0:-26.0051,0,-120.706,-38.0463,-124.318,-161.983 0|1:55:43,5,7:43:1579:5,7:165,255:-7.90261,-7.52824,-135.1,0,-115.779,-127.001 0|1:27:12,4,11:12:455:4,11:155,417:-30.5693,-21.4456,-57.5491,0,-24.5655,-33.9901 0|0:12:10,2,0:10:367:2,0:78,0:-3.79111,0,-29.7647,-6.80141,-30.3668,-36.7824 dDocent_Contig_10205 8 . C A 1191.36 . AB=0.333333;ABP=39.2015;AC=4;AF=0.5;AN=8;AO=50;CIGAR=1X9M;DP=150;DPB=150.2;DPRA=0;EPP=111.584;EPPR=215.815;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1890;QR=3792;RO=98;RPL=0;RPP=111.584;RPPR=215.815;RPR=50;RUN=1;SAF=50;SAP=111.584;SAR=0;SRF=98;SRP=215.815;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:40:22,0,18:22:856:0,18:0,687:-50.1203,-56.743,-127.093,0,-70.7345,-65.316 0|1:35:25,0,10:25:949:0,10:0,380:-24.0181,-31.5439,-109.357,0,-78.1922,-75.1819 0|1:35:29,0,6:29:1133:0,6:0,227:-10.2567,-18.9866,-112.14,0,-93.5339,-91.7277 0|1:40:22,2,16:22:854:2,16:79,596:-42.139,-42.2582,-111.834,0,-63.6613,-65.3463 dDocent_Contig_10206 13 . G A 38.6172 . AB=0.157895;ABP=22.325;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=70;DPB=70;DPRA=1.11765;EPP=9.52472;EPPR=148.499;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=0.985075;PAO=0;PQA=0;PQR=0;PRO=0;QA=121;QR=2642;RO=67;RPL=0;RPP=9.52472;RPPR=148.499;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=67;SRP=148.499;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:12:12,0:12:484:0:0:0,-3.61236,-43.9111 0/1:19:16,3:16:637:3:121:-5.56063,0,-51.9419 0/0:29:29,0:29:1144:0:0:0,-8.72987,-103.239 0/0:10:10,0:10:377:0:0:0,-3.0103,-34.2748 dDocent_Contig_10207 18 . C T 362.067 . AB=0.368421;ABP=8.7247;AC=2;AF=0.25;AN=8;AO=14;CIGAR=1X;DP=54;DPB=54;DPRA=2.375;EPP=33.4109;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.975;PAO=0;PQA=0;PQR=0;PRO=0;QA=559;QR=1580;RO=40;RPL=0;RPP=33.4109;RPPR=89.8692;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:4:4,0:4:164:0:0:0,-1.20412,-15.1499 0/1:18:8,10:8:317:10:405:-31.3919,0,-23.4773 0/1:20:16,4:16:640:4:154:-8.21269,0,-51.9132 0/0:12:12,0:12:459:0:0:0,-3.61236,-41.6542 dDocent_Contig_10208 24 . C T 643.412 . AB=0.241935;ABP=74.7389;AC=3;AF=0.375;AN=8;AO=30;CIGAR=1X;DP=137;DPB=137;DPRA=3.17949;EPP=68.1545;EPPR=235.358;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1178;QR=4298;RO=107;RPL=0;RPP=68.1545;RPPR=235.358;RPR=30;RUN=1;SAF=30;SAP=68.1545;SAR=0;SRF=107;SRP=235.358;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:38:32,6:32:1288:6:244:-10.8997,0,-104.746 0/1:66:51,15:51:2063:15:608:-35.1882,0,-165.977 0/1:20:11,9:11:439:9:326:-23.6513,0,-33.8433 0/0:13:13,0:13:508:0:0:0,-3.91339,-46.06 dDocent_Contig_10209 67 . A G 1310.16 . AB=0.125;ABP=198.443;AC=4;AF=0.5;AN=8;AO=20;CIGAR=1X3M;DP=160;DPB=160;DPRA=0;EPP=46.4397;EPPR=168.042;GTI=0;LEN=1;MEANALT=2.25;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.8;PAIREDR=0.947368;PAO=0;PQA=0;PQR=0;PRO=0;QA=658;QR=2268;RO=76;RPL=20;RPP=46.4397;RPPR=168.042;RPR=0;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=76;SRP=168.042;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:52:27,21,4:27:800:21,4:654,136:-44.3722,0,-57.5004,-41.4636,-52.7846,-104.111 0|1:66:26,27,13:26:788:27,13:853,443:-60.7789,0,-54.9265,-32.6547,-27.0988,-91.8144 0|1:38:20,14,2:20:601:14,2:460,57:-31.2517,0,-43.9261,-32.7472,-43.6134,-80.2029 0|1:4:3,0,1:3:79:0,1:0,22:-0.995812,-1.8989,-8.13728,0,-6.4692,-6.16817 dDocent_Contig_10211 16 . C G 1759.44 . AB=0.411392;ABP=13.7852;AC=3;AF=0.375;AN=8;AO=65;CIGAR=2X;DP=158;DPB=158;DPRA=0;EPP=144.156;EPPR=135.47;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.892308;PAIREDR=0.983607;PAO=0;PQA=0;PQR=0;PRO=0;QA=2411;QR=2403;RO=61;RPL=0;RPP=144.156;RPPR=135.47;RPR=65;RUN=1;SAF=65;SAP=144.156;SAR=0;SRF=61;SRP=135.47;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:34:13,13,8:13:518:13,8:473,319:-34.6944,0,-38.7429,-12.3241,-16.3858,-52.5896 0|1:42:19,20,3:19:744:20,3:753,123:-55.9531,0,-55.1357,-51.5161,-51.0016,-111.792 0|0:50:19,15,16:19:741:15,16:555,608:-44.1398,-4.46243,-60.8472,0,-15.5128,-56.0894 0|1:32:10,17,5:10:400:17,5:630,173:-48.5543,0,-27.8681,-37.5239,-18.9573,-68.9792 dDocent_Contig_10212 33 . T C 1021.42 . AB=0.614035;ABP=9.44853;AC=2;AF=0.25;AN=8;AO=35;CIGAR=1X;DP=78;DPB=78;DPRA=2.71429;EPP=79.0118;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1356;QR=1689;RO=43;RPL=0;RPP=79.0118;RPPR=96.3836;RPR=35;RUN=1;SAF=35;SAP=79.0118;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:46:13,33:13:516:33:1278:-101.447,0,-32.9401 0/1:11:9,2:9:364:2:78:-4.09145,0,-29.8131 0/0:17:17,0:17:648:0:0:0,-5.11751,-58.6451 0/0:4:4,0:4:161:0:0:0,-1.20412,-14.8755 dDocent_Contig_10213 29 . G A 30.5125 . AB=0.136364;ABP=28.2783;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=149;DPB=149;DPRA=0.520408;EPP=11.6962;EPPR=317.874;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=153;QR=5767;RO=145;RPL=0;RPP=11.6962;RPPR=317.874;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=145;SRP=317.874;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:51:51,0:51:1990:0:0:0,-15.3525,-179.289 0/0:47:47,0:47:1893:0:0:0,-14.1484,-170.566 0/0:29:28,1:28:1122:1:31:0,-5.63042,-98.158 0/1:22:19,3:19:762:3:122:-4.74983,0,-62.279 dDocent_Contig_10214 171 . C T 46.4929 . AB=0.107143;ABP=78.0812;AC=1;AF=0.125;AN=8;AO=10;CIGAR=7M1X6M;DP=160;DPB=154;DPRA=3;EPP=3.87889;EPPR=15.1705;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=385;QR=5439;RO=140;RPL=6;RPP=3.87889;RPPR=15.1705;RPR=4;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=307.016;SRR=140;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:56:45,5,6:45:1751:5,6:196,238:-6.04719,-3.4779,-145.862,0,-127.775,-142.087 0|0:64:55,2,4:55:2135:2,4:77,147:0,-10.2281,-185.074,-4.53956,-173.663,-178.781 0|0:29:29,0,0:29:1127:0,0:0,0:0,-8.72987,-101.726,-8.72987,-101.726,-101.726 0|0:11:11,0,0:11:426:0,0:0,0:0,-3.31133,-38.692,-3.31133,-38.692,-38.692 dDocent_Contig_10215 98 . N T 75.0174 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=75;QR=0;RO=0;RPL=3;RPP=9.52472;RPPR=0;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:68:-6.45793,-0.60206,0 1/1:1:0,1:0:0:1:7:-0.699998,-0.30103,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_10216 142 . C A 30.4287 . AB=0.181818;ABP=22.3561;AC=2;AF=0.25;AN=8;AO=5;CIGAR=1X;DP=74;DPB=74;DPRA=0.4375;EPP=13.8677;EPPR=152.842;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.985507;PAO=0;PQA=0;PQR=0;PRO=0;QA=173;QR=2299;RO=69;RPL=0;RPP=13.8677;RPPR=152.842;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=152.842;SRR=69;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:32:32,0:32:1079:0:0:0,-9.63296,-97.4152 0/0:20:19,1:19:606:1:35:0,-2.52197,-51.342 0/1:17:14,3:14:472:3:105:-4.67865,0,-37.6846 0/1:5:4,1:4:142:1:33:-1.79398,0,-11.624 dDocent_Contig_10217 9 . G A 3918.06 . AB=0.353881;ABP=84.2372;AC=4;AF=0.5;AN=8;AO=155;CIGAR=1X;DP=438;DPB=438;DPRA=0;EPP=339.589;EPPR=608.882;GTI=0;LEN=1;MEANALT=1;MQM=59.6387;MQMR=59.5336;NS=4;NUMALT=1;ODDS=2.77556e-17;PAIRED=0.993548;PAIREDR=0.996466;PAO=0;PQA=0;PQR=0;PRO=0;QA=5907;QR=10664;RO=283;RPL=0;RPP=339.589;RPPR=617.537;RPR=155;RUN=1;SAF=155;SAP=339.589;SAR=0;SRF=282;SRP=608.882;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:116:45,71:45:1667:71:2697:-206.321,0,-114.175 0/1:122:84,38:84:3181:38:1448:-93.8718,0,-249.724 0/1:139:109,30:109:4111:30:1153:-62.2271,0,-328.23 0/1:61:45,16:45:1705:16:609:-36.7838,0,-135.347 dDocent_Contig_10218 13 . C G 340.769 . AB=0.272727;ABP=22.751;AC=4;AF=0.5;AN=8;AO=15;CIGAR=1X;DP=60;DPB=60;DPRA=1.20513;EPP=35.5824;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=552;QR=1823;RO=45;RPL=0;RPP=35.5824;RPPR=100.727;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:24,6:24:972:6:213:-10.4692,0,-78.7464 0/1:14:8,6:8:324:6:232:-17.0291,0,-25.3144 0/0:13:13,0:13:527:0:0:0,-3.91339,-47.7768 1/1:3:0,3:0:0:3:107:-9.9764,-0.90309,0 dDocent_Contig_10222 59 . C T 148.617 . AB=0.75;ABP=7.35324;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=30;DPB=30;DPRA=1.09091;EPP=16.0391;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=207;QR=828;RO=24;RPL=6;RPP=16.0391;RPPR=55.1256;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:9:9,0:9:312:0:0:0,-2.70927,-28.416 0/1:8:2,6:2:70:6:207:-16.56,0,-4.23916 0/0:7:7,0:7:239:0:0:0,-2.10721,-21.844 0/0:6:6,0:6:207:0:0:0,-1.80618,-18.9682 dDocent_Contig_10223 45 . T A 4737.81 . AB=0.0575916;ABP=327.719;AC=0;AF=0;AN=8;AO=11;CIGAR=4M1X1M1X1M4D2M2X;DP=236;DPB=192.25;DPRA=0;EPP=19.0002;EPPR=122.589;GTI=0;LEN=1;MEANALT=2.66667;MQM=12;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=420;QR=2252;RO=59;RPL=11;RPP=26.8965;RPPR=122.589;RPR=0;RUN=1;SAF=10;SAP=19.0002;SAR=1;SRF=59;SRP=131.127;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:55:7,3,45:7:273:3,45:117,1713:-138.621,-138.41,-159.948,0,-20.3751,-9.08259 0|0:77:20,3,54:20:769:3,54:114,2018:-159.416,-163.116,-225.344,0,-61.0582,-47.1016 0|0:59:21,5,31:21:798:5,31:189,1187:-91.2738,-93.7397,-157.675,0,-61.7674,-56.2806 0|0:45:11,0,32:11:412:0,32:0,1166:-91.8676,-95.179,-128.921,0,-33.7101,-24.0772 dDocent_Contig_10224 9 . C T 56.5095 . AB=0.151515;ABP=37.8197;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=227;DPB=227;DPRA=0.464516;EPP=16.0391;EPPR=482.906;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.995475;PAO=0;PQA=0;PQR=0;PRO=0;QA=227;QR=8385;RO=221;RPL=0;RPP=16.0391;RPPR=482.906;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=221;SRP=482.906;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:90:90,0:90:3436:0:0:0,-27.0927,-309.378 0/0:65:65,0:65:2436:0:0:0,-19.5669,-219.455 0/1:33:28,5:28:1055:5:188:-7.34992,0,-85.3226 0/0:39:38,1:38:1458:1:39:0,-7.84361,-127.602 dDocent_Contig_10225 133 . C T 756.59 . AB=0.409091;ABP=9.32731;AC=4;AF=0.5;AN=8;AO=36;CIGAR=1X;DP=88;DPB=88;DPRA=0;EPP=81.1833;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1202;QR=1807;RO=52;RPL=0;RPP=81.1833;RPPR=115.927;RPR=36;RUN=1;SAF=0;SAP=81.1833;SAR=36;SRF=0;SRP=115.927;SRR=52;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:38:15,23:15:524:23:777:-58.8041,0,-36.0518 0/1:29:21,8:21:727:8:259:-14.8962,0,-57.0218 0/1:6:3,3:3:104:3:96:-7.1511,0,-7.89691 0/1:15:13,2:13:452:2:70:-2.13195,0,-36.4968 dDocent_Contig_10226 16 . T A 83.5536 . AB=0.111111;ABP=38.4777;AC=0;AF=0;AN=8;AO=3;CIGAR=1X3M1X1M1X;DP=47;DPB=47;DPRA=5.4;EPP=9.52472;EPPR=85.5263;GTI=0;LEN=1;MEANALT=2;MQM=58;MQMR=60;NS=4;NUMALT=2;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.921053;PAO=0;PQA=0;PQR=0;PRO=0;QA=114;QR=1483;RO=38;RPL=0;RPP=9.52472;RPPR=85.5263;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:27:20,3,4:20:787:3,4:114,160:-7.17061,-3.85646,-67.6869,0,-55.4092,-63.5467 0|0:10:8,0,2:8:304:0,2:0,80:-4.58128,-6.98951,-31.9017,0,-25.3078,-24.7057 0|0:9:9,0,0:9:352:0,0:0,0:0,-2.70927,-32.0391,-2.70927,-32.0391,-32.0391 0|0:1:1,0,0:1:40:0,0:0,0:0,-0.30103,-3.99568,-0.30103,-3.99568,-3.99568 dDocent_Contig_10227 9 . C A 2386.36 . AB=0.444444;ABP=3.49285;AC=3;AF=0.375;AN=8;AO=73;CIGAR=1X;DP=118;DPB=118;DPRA=2.69231;EPP=161.528;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2755;QR=1725;RO=45;RPL=0;RPP=161.528;RPPR=100.727;RPR=73;RUN=1;SAF=73;SAP=161.528;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:64:0,64:0:0:64:2424:-218.372,-19.2659,0 0/1:18:10,8:10:387:8:297:-21.6624,0,-29.769 0/0:23:22,1:22:833:1:34:0,-3.52478,-71.8887 0/0:13:13,0:13:505:0:0:0,-3.91339,-45.7991 dDocent_Contig_10228 12 . G A 126.492 . AB=0.118812;ABP=130.482;AC=1;AF=0.125;AN=8;AO=13;CIGAR=1X;DP=202;DPB=202;DPRA=1.46341;EPP=31.2394;EPPR=413.419;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=531;QR=7556;RO=189;RPL=0;RPP=31.2394;RPPR=413.419;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=189;SRP=413.419;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:101:89,12:89:3570:12:490:-14.0471,0,-290.926 0/0:49:49,0:49:1962:0:0:0,-14.7505,-176.779 0/0:33:33,0:33:1312:0:0:0,-9.93399,-118.345 0/0:19:18,1:18:712:1:41:0,-1.625,-60.3096 dDocent_Contig_10230 32 . A G 32.7772 . AB=0.222222;ABP=9.04217;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X;DP=105;DPB=105;DPRA=0.28125;EPP=7.35324;EPPR=226.672;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=4059;RO=103;RPL=0;RPP=7.35324;RPPR=226.672;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=103;SRP=226.672;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:47:47,0:47:1878:0:0:0,-14.1484,-169.223 0/0:30:30,0:30:1162:0:0:0,-9.0309,-104.855 0/0:19:19,0:19:747:0:0:0,-5.71957,-67.5538 0/1:9:7,2:7:272:2:81:-4.97646,0,-22.1335 dDocent_Contig_10231 31 . G A 274.677 . AB=0.213333;ABP=56.5443;AC=4;AF=0.5;AN=8;AO=16;CIGAR=1X;DP=75;DPB=75;DPRA=0;EPP=37.7539;EPPR=128.956;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=620;QR=2284;RO=58;RPL=0;RPP=37.7539;RPPR=128.956;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:22,4:22:888:4:149:-5.94147,0,-72.4015 0/1:15:9,5:9:344:5:198:-13.8417,0,-26.9754 0/1:23:18,5:18:684:5:198:-11.2734,0,-54.9572 0/1:11:9,2:9:368:2:75:-3.80747,0,-30.174 dDocent_Contig_10232 12 . T A 89.9032 . AB=0.15;ABP=24.2907;AC=2;AF=0.25;AN=8;AO=4;CIGAR=1X1M;DP=66;DPB=66;DPRA=0.5;EPP=11.6962;EPPR=131.127;GTI=0;LEN=1;MEANALT=1;MQM=48.25;MQMR=59.4407;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.949153;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=2252;RO=59;RPL=0;RPP=11.6962;RPPR=131.127;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=59;SRP=131.127;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:6:3,3,0:3:118:3,0:109,0:-8.24007,0,-9.07792,-9.14316,-9.98101,-18.7504 0|1:20:17,0,3:17:653:0,3:0,109:-4.1474,-9.26491,-62.8847,0,-53.986,-53.0829 0|0:30:30,0,0:30:1130:0,0:0,0:0,-9.0309,-101.999,-9.0309,-101.999,-101.999 0|0:10:9,0,1:9:351:0,1:0,13:0,-2.70927,-31.8213,-2.00031,-31.2422,-30.9412 dDocent_Contig_10233 93 . T C 148.814 . AB=0.222222;ABP=33.1696;AC=4;AF=0.5;AN=8;AO=10;CIGAR=1X;DP=45;DPB=45;DPRA=0;EPP=24.725;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=349;QR=1219;RO=35;RPL=10;RPP=24.725;RPPR=79.0118;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:10,5:10:349:5:175:-11.5782,0,-27.2313 0/1:11:10,1:10:349:1:35:-0.187299,0,-28.4355 0/1:9:8,1:8:280:1:35:-0.789359,0,-22.8307 0/1:10:7,3:7:241:3:104:-6.69279,0,-19.0161 dDocent_Contig_10235 28 . C G 472.351 . AB=0.339623;ABP=14.851;AC=1;AF=0.125;AN=8;AO=26;CIGAR=1X;DP=177;DPB=177;DPRA=6.22222;EPP=59.4686;EPPR=328.731;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.993333;PAO=0;PQA=0;PQR=0;PRO=0;QA=1040;QR=6001;RO=150;RPL=0;RPP=59.4686;RPPR=328.731;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=150;SRP=328.731;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:53:35,18:35:1407:18:714:-48.633,0,-110.915 0/0:9:9,0:9:361:0:0:0,-2.70927,-32.8539 0/0:71:65,5:65:2605:5:203:0,-2.82784,-215.922 0/0:44:41,3:41:1628:3:123:0,-1.78053,-135.286 dDocent_Contig_10236 12 . T G 1732.57 . AB=0.352941;ABP=38.1371;AC=4;AF=0.5;AN=8;AO=66;CIGAR=1X;DP=187;DPB=187;DPRA=0;EPP=146.327;EPPR=265.758;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.818182;PAIREDR=0.900826;PAO=0;PQA=0;PQR=0;PRO=0;QA=2618;QR=4858;RO=121;RPL=0;RPP=146.327;RPPR=265.758;RPR=66;RUN=1;SAF=66;SAP=146.327;SAR=0;SRF=121;SRP=265.758;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:73:55,18:55:2231:18:716:-42.7889,0,-178.972 0/1:34:30,4:30:1212:4:159:-4.45673,0,-99.1095 0/1:52:22,30:22:845:30:1177:-90.556,0,-60.6975 0/1:28:14,14:14:570:14:566:-42.8528,0,-43.2133 dDocent_Contig_10237 60 . G A 99.9297 . AB=0.333333;ABP=6.62942;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=45;DPB=45;DPRA=1.5;EPP=13.8677;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=173;QR=1593;RO=40;RPL=5;RPP=13.8677;RPPR=89.8692;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:10,5:10:393:5:173:-11.3909,0,-31.2099 0/0:12:12,0:12:485:0:0:0,-3.61236,-44.0014 0/0:12:12,0:12:474:0:0:0,-3.61236,-43.009 0/0:6:6,0:6:241:0:0:0,-1.80618,-22.0658 dDocent_Contig_10238 10 . C G 272.386 . AB=0.173913;ABP=87.981;AC=2;AF=0.25;AN=8;AO=23;CIGAR=1X;DP=201;DPB=201;DPRA=0;EPP=52.9542;EPPR=389.532;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=916;QR=7173;RO=178;RPL=0;RPP=52.9542;RPPR=389.532;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=178;SRP=389.532;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:82:71,11:71:2880:11:443:-15.5409,0,-234.602 0/0:52:48,4:48:1931:4:153:0,-1.51561,-159.842 0/0:57:54,3:54:2167:3:123:0,-5.69392,-183.74 0/1:10:5,5:5:195:5:197:-15.0956,0,-14.9112 dDocent_Contig_10239 16 . G A 12939.1 . AB=0.644068;ABP=130.649;AC=5;AF=0.625;AN=8;AO=456;CIGAR=1X4M;DP=708;DPB=731.4;DPRA=0;EPP=993.202;EPPR=291.816;GTI=0;LEN=1;MEANALT=3.25;MQM=56.5439;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.383772;PAIREDR=0.789474;PAO=0;PQA=0;PQR=0;PRO=0;QA=16444;QR=5152;RO=133;RPL=0;RPP=993.202;RPPR=291.816;RPR=456;RUN=1;SAF=456;SAP=993.202;SAR=0;SRF=133;SRP=291.816;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:258:33,36,189:33:1267:36,189:1122,6902:-552.588,-479.165,-572.33,0,-20.7234,-47.1483 0|1:157:29,25,97:29:1134:25,97:893,3486:-272.635,-211.855,-297.571,0,-23.7613,-64.0568 0|1:209:55,27,125:55:2129:27,125:977,4529:-352.264,-292.074,-458.83,0,-98.1635,-137.272 1|1:84:16,21,45:16:622:21,45:755,1527:-123.824,-70.2661,-115.069,-7.21964,0,-44.8031 dDocent_Contig_10240 18 . T G 39.7354 . AB=0.285714;ABP=5.80219;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=61;DPB=61;DPRA=1.25926;EPP=9.52472;EPPR=128.956;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.666667;PAIREDR=0.87931;PAO=0;PQA=0;PQR=0;PRO=0;QA=123;QR=2315;RO=58;RPL=0;RPP=9.52472;RPPR=128.956;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:12:12,0:12:481:0:0:0,-3.61236,-43.6385 0/0:15:15,0:15:609:0:0:0,-4.51545,-55.1478 0/0:27:26,1:26:1020:1:41:0,-4.03324,-87.9963 0/1:7:5,2:5:205:2:82:-5.67247,0,-16.7278 dDocent_Contig_10241 42 . A G 102.838 . AB=0.444444;ABP=3.25157;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=34;DPB=34;DPRA=1.08;EPP=11.6962;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=159;QR=1200;RO=30;RPL=0;RPP=11.6962;RPPR=68.1545;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:4:4,0:4:162:0:0:0,-1.20412,-14.967 0/1:9:5,4:5:198:4:159:-11.9827,0,-15.4878 0/0:13:13,0:13:520:0:0:0,-3.91339,-47.1459 0/0:8:8,0:8:320:0:0:0,-2.40824,-29.1668 dDocent_Contig_10243 16 . G A 1385.53 . AB=0.578313;ABP=7.43173;AC=3;AF=0.375;AN=8;AO=48;CIGAR=1X;DP=114;DPB=114;DPRA=0.892473;EPP=107.241;EPPR=146.327;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1866;QR=2668;RO=66;RPL=0;RPP=107.241;RPPR=146.327;RPR=48;RUN=1;SAF=48;SAP=107.241;SAR=0;SRF=66;SRP=146.327;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:31:31,0:31:1260:0:0:0,-9.33193,-113.664 0/1:39:6,33:6:242:33:1285:-104.185,0,-10.4174 0/1:26:18,8:18:731:8:316:-20.9783,0,-58.2876 0/1:18:11,7:11:435:7:265:-18.7874,0,-34.0828 dDocent_Contig_10244 27 . G A 515.892 . AB=0.375;ABP=10.6105;AC=4;AF=0.5;AN=8;AO=21;CIGAR=1X;DP=56;DPB=56;DPRA=0;EPP=48.6112;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=826;QR=1368;RO=35;RPL=0;RPP=48.6112;RPPR=79.0118;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:11,9:11:428:9:348:-25.6569,0,-32.8475 0/1:12:7,5:7:283:5:204:-15.1317,0,-22.231 0/1:19:14,5:14:539:5:193:-12.018,0,-43.1269 0/1:5:3,2:3:118:2:81:-6.18058,0,-9.49757 dDocent_Contig_10245 18 . G T 407.576 . AB=0.301887;ABP=21.0786;AC=1;AF=0.125;AN=8;AO=16;CIGAR=1X;DP=86;DPB=86;DPRA=4.81818;EPP=37.7539;EPPR=155.013;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.928571;PAO=0;PQA=0;PQR=0;PRO=0;QA=642;QR=2782;RO=70;RPL=0;RPP=37.7539;RPPR=155.013;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=70;SRP=155.013;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:53:37,16:37:1483:16:642:-42.1554,0,-117.762 0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9392 0/0:21:21,0:21:838:0:0:0,-6.32163,-75.7327 0/0:8:8,0:8:321:0:0:0,-2.40824,-29.2568 dDocent_Contig_10246 32 . T A 46.4629 . AB=0.107143;ABP=115.617;AC=2;AF=0.25;AN=8;AO=13;CIGAR=1X;DP=206;DPB=206;DPRA=1.12766;EPP=31.2394;EPPR=422.104;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=524;QR=7774;RO=193;RPL=0;RPP=31.2394;RPPR=422.104;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=193;SRP=422.104;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:75:71,4:71:2865:4:163:0,-7.51882,-242.882 0/1:53:47,6:47:1890:6:238:-5.83796,0,-154.346 0/0:47:47,0:47:1882:0:0:0,-14.1484,-169.587 0/1:31:28,3:28:1137:3:123:-2.13286,0,-93.2772 dDocent_Contig_10247 41 . A T 98.8215 . AB=0.147541;ABP=68.8308;AC=4;AF=0.5;AN=8;AO=9;CIGAR=1X;DP=61;DPB=61;DPRA=0;EPP=22.5536;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.961538;PAO=0;PQA=0;PQR=0;PRO=0;QA=363;QR=2071;RO=52;RPL=0;RPP=22.5536;RPPR=115.927;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:15,4:15:603:4:161:-9.15533,0,-48.8882 0/1:12:10,2:10:395:2:81:-4.07337,0,-32.2955 0/1:20:18,2:18:711:2:80:-1.57119,0,-58.2947 0/1:10:9,1:9:362:1:41:-1.08427,0,-29.9337 dDocent_Contig_10248 91 . T G 347.068 . AB=0.583333;ABP=4.45795;AC=2;AF=0.25;AN=8;AO=14;CIGAR=1X;DP=51;DPB=51;DPRA=0.888889;EPP=33.4109;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.571429;PAIREDR=0.621622;PAO=0;PQA=0;PQR=0;PRO=0;QA=496;QR=1307;RO=37;RPL=14;RPP=33.4109;RPPR=83.3548;RPR=0;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:15:15,0:15:517:0:0:0,-4.51545,-46.8502 0/1:12:6,6:6:215:6:216:-16.1782,0,-16.0868 0/1:12:4,8:4:144:8:280:-21.9266,0,-9.70109 0/0:12:12,0:12:431:0:0:0,-3.61236,-39.1303 dDocent_Contig_10252 8 . C A 94.4045 . AB=0.206897;ABP=24.6501;AC=2;AF=0.25;AN=8;AO=6;CIGAR=1X;DP=63;DPB=63;DPRA=0.852941;EPP=16.0391;EPPR=122.441;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.872727;PAO=0;PQA=0;PQR=0;PRO=0;QA=233;QR=2120;RO=55;RPL=0;RPP=16.0391;RPPR=122.441;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:17:17,0:17:655:0:0:0,-5.11751,-59.2859 0/1:14:11,2:11:424:2:78:-3.10705,0,-34.2206 0/1:15:10,4:10:386:4:155:-9.72294,0,-30.4941 0/0:17:17,0:17:655:0:0:0,-5.11751,-59.287 dDocent_Contig_10253 11 . T C 436.015 . AB=0.186813;ABP=80.539;AC=3;AF=0.375;AN=8;AO=17;CIGAR=4M1X2M;DP=91;DPB=91.5714;DPRA=0;EPP=39.9253;EPPR=111.584;GTI=0;LEN=1;MEANALT=2.75;MQM=60;MQMR=60;NS=4;NUMALT=4;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=13;PRO=0.333333;QA=686;QR=1945;RO=50;RPL=0;RPP=39.9253;RPPR=111.584;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:14:8,1,0,0,5:8:314:1,0,0,5:39,0,0,204:-14.7127,-16.9401,-42.4537,-17.121,-42.7547,-42.9694,-17.121,-42.7547,-42.9694,-42.9694,0,-25.9174,-26.1193,-26.1193,-24.6142 0|0:44:23,0,13,4,2:23:901:0,13,4,2:0,255,155,82:-8.53007,-15.4538,-89.6248,0,-74.1176,-70.2043,-2.6969,-76.896,-61.395,-75.6919,-8.66762,-82.8523,-67.3476,-70.1227,-82.2503 0|1:25:14,2,1,0,7:14:543:2,1,0,7:73,16,0,283:-19.2553,-22.1419,-66.1602,-22.6163,-65.9007,-66.9519,-23.4698,-66.7623,-67.2529,-68.1163,0,-43.4202,-43.9063,-44.7668,-42.6596 0|1:8:5,0,0,0,3:5:187:0,0,0,3:0,0,0,117:-8.50105,-10.0062,-25.3074,-10.0062,-25.3074,-25.3074,-10.0062,-25.3074,-25.3074,-25.3074,0,-15.6848,-15.6848,-15.6848,-14.7817 dDocent_Contig_10255 91 . G A 428.609 . AB=0.35;ABP=14.7363;AC=2;AF=0.25;AN=8;AO=22;CIGAR=1X;DP=77;DPB=77;DPRA=8.22222;EPP=50.7827;EPPR=120.27;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=0.954545;PAIREDR=0.62963;PAO=0;PQA=0;PQR=0;PRO=0;QA=738;QR=1800;RO=54;RPL=22;RPP=50.7827;RPPR=120.27;RPR=0;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:10,12:10:315:12:404:-29.9807,0,-21.9492 0/1:37:28,9:28:962:9:301:-16.2779,0,-75.7543 0/0:14:13,1:13:442:1:33:0,-0.915285,-36.8063 0/0:3:3,0:3:81:0:0:0,-0.90309,-7.5583 dDocent_Contig_10256 123 . C A 548.412 . AB=0;ABP=0;AC=2;AF=0.25;AN=8;AO=17;CIGAR=1X;DP=55;DPB=55;DPRA=1.34211;EPP=39.9253;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=599;QR=1339;RO=38;RPL=0;RPP=39.9253;RPPR=85.5263;RPR=17;RUN=1;SAF=0;SAP=39.9253;SAR=17;SRF=0;SRP=85.5263;SRR=38;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:17:0,17:0:0:17:599:-54.2392,-5.11751,0 0/0:9:9,0:9:321:0:0:0,-2.70927,-29.2334 0/0:16:16,0:16:561:0:0:0,-4.81648,-50.819 0/0:13:13,0:13:457:0:0:0,-3.91339,-41.4643 dDocent_Contig_10257 107 . N C 196.214 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=7;CIGAR=1X;DP=7;DPB=7;DPRA=0;EPP=18.2106;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=208;QR=0;RO=0;RPL=0;RPP=18.2106;RPPR=0;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:4:0,4:0:0:4:105:-9.7099,-1.20412,0 1/1:3:0,3:0:0:3:103:-9.61002,-0.90309,0 ./.:.:.:.:.:.:.:. dDocent_Contig_10258 28 . T A 2080.82 . AB=0.480519;ABP=3.51792;AC=4;AF=0.5;AN=8;AO=74;CIGAR=1X;DP=154;DPB=154;DPRA=0;EPP=163.699;EPPR=176.728;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.959459;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2895;QR=3204;RO=80;RPL=0;RPP=163.699;RPPR=176.728;RPR=74;RUN=1;SAF=74;SAP=163.699;SAR=0;SRF=80;SRP=176.728;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:50:29,21:29:1164:21:816:-58.6932,0,-89.9863 0/1:34:17,17:17:682:17:670:-50.3968,0,-51.4735 0/1:46:20,26:20:795:26:1024:-78.6111,0,-58.017 0/1:24:14,10:14:563:10:385:-27.7785,0,-43.7871 dDocent_Contig_10259 80 . T G 37.458 . AB=0.176471;ABP=18.4661;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=32;DPB=32;DPRA=3.4;EPP=9.52472;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=110;QR=1044;RO=29;RPL=3;RPP=9.52472;RPPR=65.983;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:14,3:14:489:3:110:-5.14349,0,-39.2208 0/0:6:6,0:6:222:0:0:0,-1.80618,-20.3381 0/0:3:3,0:3:111:0:0:0,-0.90309,-10.3539 0/0:6:6,0:6:222:0:0:0,-1.80618,-20.3381 dDocent_Contig_10262 26 . A G 99.1247 . AB=0.162791;ABP=45.4803;AC=3;AF=0.5;AN=6;AO=7;CIGAR=1X;DP=43;DPB=43;DPRA=0;EPP=18.2106;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=282;QR=1452;RO=36;RPL=0;RPP=18.2106;RPPR=81.1833;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:12,1:12:477:1:41:-0.181177,0,-39.3663 0/1:18:14,4:14:567:4:163:-9.63989,0,-45.9541 0/1:12:10,2:10:408:2:78:-3.79094,0,-33.4682 ./.:.:.:.:.:.:.:. dDocent_Contig_10263 31 . C A 315.373 . AB=0.166667;ABP=118.822;AC=4;AF=0.5;AN=8;AO=20;CIGAR=1X;DP=120;DPB=120;DPRA=0;EPP=46.4397;EPPR=220.158;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=801;QR=3995;RO=100;RPL=0;RPP=46.4397;RPPR=220.158;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=100;SRP=220.158;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:44:38,6:38:1520:6:241:-8.82115,0,-123.796 0/1:32:25,7:25:1006:7:285:-16.3914,0,-81.2004 0/1:20:15,5:15:599:5:193:-11.7187,0,-48.2267 0/1:24:22,2:22:870:2:82:-0.554958,0,-71.3818 dDocent_Contig_10265 46 . C T 202.269 . AB=0.25;ABP=22.5536;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X;DP=104;DPB=104;DPRA=1.58824;EPP=22.5536;EPPR=207.129;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.989362;PAO=0;PQA=0;PQR=0;PRO=0;QA=360;QR=3701;RO=94;RPL=0;RPP=22.5536;RPPR=207.129;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=94;SRP=207.129;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:22:22,0:22:879:0:0:0,-6.62266,-79.4189 0/0:30:30,0:30:1157:0:0:0,-9.0309,-104.405 0/0:16:15,0:15:577:0:0:0,-4.51545,-51.8801 0/1:36:27,9:27:1088:9:360:-21.9258,0,-87.3697 dDocent_Contig_10266 106 . N A 86.238 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=13;CIGAR=2X;DP=13;DPB=13;DPRA=0;EPP=31.2394;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=7;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=449;QR=0;RO=0;RPL=0;RPP=31.2394;RPPR=0;RPR=13;RUN=1;SAF=0;SAP=31.2394;SAR=13;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. 1|1:8:0,8:0:0:8:276:-5.10539,-2.40824,0 1|1:5:0,5:0:0:5:173:-3.21717,-1.50515,0 .:.:.:.:.:.:.:. dDocent_Contig_10267 25 . G A 90.1012 . AB=0.171429;ABP=35.8306;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=71;DPB=71;DPRA=2.91667;EPP=16.0391;EPPR=144.156;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=232;QR=2585;RO=65;RPL=0;RPP=16.0391;RPPR=144.156;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=65;SRP=144.156;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:12:12,0:12:475:0:0:0,-3.61236,-43.0982 0/0:11:11,0:11:445:0:0:0,-3.31133,-40.4046 0/1:35:29,6:29:1145:6:232:-10.7091,0,-92.7871 0/0:13:13,0:13:520:0:0:0,-3.91339,-47.1459 dDocent_Contig_10268 112 . G A 38.1834 . AB=0.181818;ABP=22.3561;AC=2;AF=0.25;AN=8;AO=4;CIGAR=1X;DP=39;DPB=39;DPRA=1.29412;EPP=11.6962;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=136;QR=1218;RO=35;RPL=0;RPP=11.6962;RPPR=79.0118;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=79.0118;SRR=35;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:2:2,0:2:68:0:0:0,-0.60206,-6.45793 0/0:15:15,0:15:523:0:0:0,-4.51545,-47.4005 0/1:9:8,1:8:279:1:35:-0.789359,0,-22.7397 0/1:13:10,3:10:348:3:101:-5.51034,0,-27.7426 dDocent_Contig_10269 10 . T C 163.526 . AB=0.113636;ABP=60.0608;AC=3;AF=0.375;AN=8;AO=5;CIGAR=1X2M1X;DP=94;DPB=94;DPRA=0.536585;EPP=13.8677;EPPR=161.641;GTI=0;LEN=1;MEANALT=2.5;MQM=36;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.792208;PAO=0;PQA=0;PQR=0;PRO=0;QA=200;QR=3050;RO=77;RPL=0;RPP=13.8677;RPPR=170.214;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=76;SRP=161.641;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:41:40,1,0:40:1582:1,0:41,0:0,-8.24766,-138.531,-12.0412,-138.832,-142.217 0|1:29:21,5,2:21:827:5,2:198,82:-8.98764,0,-66.5477,-9.65395,-62.3935,-77.0938 0|1:15:10,2,3:10:400:2,3:80,118:-5.3235,-2.2668,-34.6589,0,-26.9239,-32.072 0|1:9:6,3,0:6:241:3,0:117,0:-7.4388,0,-19.3572,-9.24498,-20.2603,-29.1299 dDocent_Contig_10270 98 . N G 424.236 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=15;CIGAR=2X;DP=15;DPB=32;DPRA=0;EPP=35.5824;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=34;PQA=1135;PQR=0;PRO=0;QA=464;QR=0;RO=0;RPL=15;RPP=35.5824;RPPR=0;RPR=0;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:8:0,8:0:0:8:252:-22.6594,-2.40824,0 1|1:1:0,1:0:0:1:32:-2.8784,-0.30103,0 1|1:1:0,1:0:0:1:20:-1.78653,-0.30103,0 1|1:5:0,5:0:0:5:160:-14.3979,-1.50515,0 dDocent_Contig_10271 15 . G A 1575.44 . AB=0.302564;ABP=69.0342;AC=3;AF=0.375;AN=8;AO=59;CIGAR=1X3M1X;DP=209;DPB=209;DPRA=0;EPP=131.127;EPPR=235.358;GTI=0;LEN=1;MEANALT=3.66667;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2324;QR=4136;RO=107;RPL=0;RPP=131.127;RPPR=235.358;RPR=59;RUN=1;SAF=59;SAP=131.127;SAR=0;SRF=107;SRP=235.358;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:65:21,6,24,14:21:817:6,24,14:240,944,567:-71.325,-57.9778,-123.311,0,-47.4661,-59.9104,-30.8899,-78.3605,-20.3771,-93.8155 0|1:90:47,5,25,11:47:1809:5,25,11:196,990,446:-67.3394,-65.3701,-212.388,0,-132.406,-140.999,-44.7038,-177.111,-111.741,-189.917 0|1:40:28,1,10,1:28:1088:1,10,1:38,390,41:-23.6239,-28.9372,-118.037,0,-86.281,-86.3869,-28.6669,-114.953,-86.0124,-117.769 0|0:14:11,1,0,2:11:422:1,0,2:40,0,73:-2.62872,-2.63336,-36.9832,-5.94005,-37.2842,-40.5806,0,-31.3238,-34.6202,-34.0182 dDocent_Contig_10272 11 . T C 938.247 . AB=0.21028;ABP=159.032;AC=3;AF=0.375;AN=8;AO=47;CIGAR=1X;DP=270;DPB=270;DPRA=0;EPP=105.07;EPPR=487.249;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=58.009;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.910314;PAO=0;PQA=0;PQR=0;PRO=0;QA=1887;QR=8890;RO=223;RPL=0;RPP=105.07;RPPR=487.249;RPR=47;RUN=1;SAF=47;SAP=105.07;SAR=0;SRF=223;SRP=487.249;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:97:75,22:75:3026:22:889:-51.1162,0,-241.576 0/1:36:28,8:28:1114:8:327:-18.963,0,-88.1114 0/1:81:66,15:66:2648:15:591:-29.1434,0,-212.04 0/0:56:54,2:54:2102:2:80:0,-9.2661,-179.876 dDocent_Contig_10273 65 . A G 196.818 . AB=0.238095;ABP=28.0339;AC=3;AF=0.375;AN=8;AO=10;CIGAR=1X;DP=52;DPB=52;DPRA=1.4;EPP=24.725;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.904762;PAO=0;PQA=0;PQR=0;PRO=0;QA=396;QR=1633;RO=42;RPL=10;RPP=24.725;RPPR=94.2121;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:10:10,0:10:381:0:0:0,-3.0103,-34.6373 0/1:21:19,2:19:741:2:78:-1.08167,0,-60.6891 0/1:12:6,6:6:235:6:237:-18.0903,0,-17.9091 0/1:9:7,2:7:276:2:81:-4.97646,0,-22.4993 dDocent_Contig_10274 187 . C T 344.803 . AB=0.433333;ABP=4.16842;AC=2;AF=0.25;AN=8;AO=13;CIGAR=1X;DP=50;DPB=50;DPRA=1.5;EPP=31.2394;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.972973;PAO=0;PQA=0;PQR=0;PRO=0;QA=513;QR=1448;RO=37;RPL=13;RPP=31.2394;RPPR=83.3548;RPR=0;RUN=1;SAF=0;SAP=31.2394;SAR=13;SRF=0;SRP=83.3548;SRR=37;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:14,8:14:529:8:312:-21.8156,0,-41.3123 0/1:8:3,5:3:122:5:201:-16.0627,0,-8.96425 0/0:9:9,0:9:365:0:0:0,-2.70927,-33.2151 0/0:11:11,0:11:432:0:0:0,-3.31133,-39.2303 dDocent_Contig_10276 20 . C A 73.6489 . AB=0.210526;ABP=16.8392;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=64;DPB=64;DPRA=1.26667;EPP=11.6962;EPPR=133.299;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.966667;PAO=0;PQA=0;PQR=0;PRO=0;QA=160;QR=2425;RO=60;RPL=0;RPP=11.6962;RPPR=133.299;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:11,0:11:446:0:0:0,-3.31133,-40.496 0/1:19:15,4:15:606:4:160:-9.06386,0,-49.1574 0/0:13:13,0:13:526:0:0:0,-3.91339,-47.6868 0/0:21:21,0:21:847:0:0:0,-6.32163,-76.5412 dDocent_Contig_10277 60 . A G 119.118 . AB=0.357143;ABP=5.49198;AC=2;AF=0.25;AN=8;AO=5;CIGAR=1X;DP=34;DPB=34;DPRA=0.7;EPP=13.8677;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=204;QR=1147;RO=29;RPL=5;RPP=13.8677;RPPR=65.983;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:8,1:8:316:1:41:-1.3853,0,-26.0941 0/0:14:14,0:14:559:0:0:0,-4.21442,-50.6539 0/1:5:1,4:1:40:4:163:-13.5533,0,-2.49053 0/0:6:6,0:6:232:0:0:0,-1.80618,-21.2425 dDocent_Contig_10278 107 . N T 96.902 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=97;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1:0,1:0:0:1:35:-3.49863,-0.30103,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:62:-5.88885,-0.60206,0 dDocent_Contig_10279 23 . C T 635.845 . AB=0.149171;ABP=196.511;AC=1;AF=0.125;AN=8;AO=27;CIGAR=1X3M1X;DP=233;DPB=233;DPRA=1.16026;EPP=61.6401;EPPR=402.561;GTI=0;LEN=1;MEANALT=2.33333;MQM=40;MQMR=59.3261;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.967391;PAO=0;PQA=0;PQR=0;PRO=0;QA=1068;QR=7292;RO=184;RPL=0;RPP=61.6401;RPPR=402.561;RPR=27;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=184;SRP=402.561;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:76:60,7,8:60:2393:7,8:278,322:-8.51064,-5.49114,-200.38,0,-175.948,-194.618 0|0:63:45,6,12:45:1790:6,12:233,484:-26.3764,-22.1355,-164.097,0,-126.004,-140.189 0|0:52:52,0,0:52:2038:0,0:0,0:0,-15.6536,-183.579,-15.6536,-183.579,-183.579 0|1:42:27,14,1:27:1071:14,1:557,37:-34.0955,0,-83.9661,-39.1962,-85.1545,-127.068 dDocent_Contig_10281 15 . C A 50.9236 . AB=0.666667;ABP=3.73412;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X2M3D1X;DP=96;DPB=95.1429;DPRA=0.0967742;EPP=7.35324;EPPR=207.129;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=3717;RO=94;RPL=0;RPP=7.35324;RPPR=207.129;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=94;SRP=207.129;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:38:38,0:38:1500:0:0:0,-11.4391,-135.254 0|0:41:41,0:41:1629:0:0:0,-12.3422,-146.85 0|1:3:1,2:1:40:2:81:-6.78264,0,-3.09259 0|0:14:14,0:14:548:0:0:0,-4.21442,-49.662 dDocent_Contig_10282 133 . G A 117.162 . AB=0.25;ABP=18.2106;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=77;DPB=77;DPRA=1.71429;EPP=18.2106;EPPR=155.013;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=239;QR=2344;RO=70;RPL=0;RPP=18.2106;RPPR=155.013;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=155.013;SRR=70;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:19:19,0:19:638:0:0:0,-5.71957,-57.7342 0/1:28:21,7:21:699:7:239:-13.4152,0,-54.7895 0/0:22:22,0:22:732:0:0:0,-6.62266,-66.1883 0/0:8:8,0:8:275:0:0:0,-2.40824,-25.0847 dDocent_Contig_10284 17 . C A 130.334 . AB=0.139241;ABP=92.3155;AC=3;AF=0.375;AN=8;AO=11;CIGAR=1X;DP=100;DPB=100;DPRA=1.25397;EPP=26.8965;EPPR=194.1;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.965909;PAO=0;PQA=0;PQR=0;PRO=0;QA=448;QR=3502;RO=88;RPL=0;RPP=26.8965;RPPR=194.1;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=88;SRP=194.1;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:39:31,7:31:1235:7:285:-14.2807,0,-99.6893 0/1:31:28,3:28:1127:3:122:-2.04056,0,-92.3823 0/0:21:21,0:21:827:0:0:0,-6.32163,-74.7445 0/1:9:8,1:8:313:1:41:-1.3853,0,-25.8202 dDocent_Contig_10285 10 . T A 2228.11 . AB=0.413265;ABP=15.8176;AC=4;AF=0.5;AN=8;AO=81;CIGAR=1X;DP=196;DPB=196;DPRA=0;EPP=178.9;EPPR=252.73;GTI=0;LEN=1;MEANALT=1;MQM=58.7531;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.814815;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3210;QR=4595;RO=115;RPL=0;RPP=178.9;RPPR=252.73;RPR=81;RUN=1;SAF=81;SAP=178.9;SAR=0;SRF=115;SRP=252.73;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:54:47,7:47:1891:7:283:-9.53887,0,-154.134 0/1:51:22,29:22:883:29:1146:-88.0757,0,-64.4248 0/1:59:27,32:27:1075:32:1268:-95.7124,0,-79.275 0/1:32:19,13:19:746:13:513:-36.8817,0,-57.8242 dDocent_Contig_10287 22 . G A 1455.6 . AB=0.292079;ABP=78.8613;AC=4;AF=0.5;AN=8;AO=59;CIGAR=1X;DP=202;DPB=202;DPRA=0;EPP=131.127;EPPR=311.359;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=0.985915;PAO=0;PQA=0;PQR=0;PRO=0;QA=2358;QR=5672;RO=142;RPL=0;RPP=131.127;RPPR=311.359;RPR=59;RUN=1;SAF=59;SAP=131.127;SAR=0;SRF=142;SRP=311.359;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:79:70,9:70:2771:9:363:-9.25271,0,-225.723 0/1:93:59,33:59:2384:33:1308:-90.1708,0,-186.892 0/1:11:6,5:6:233:5:205:-15.5237,0,-18.0228 0/1:19:7,12:7:284:12:482:-38.0104,0,-20.2144 dDocent_Contig_10288 14 . A T 1847.74 . AB=0.645161;ABP=20.0318;AC=4;AF=0.5;AN=8;AO=60;CIGAR=1X;DP=93;DPB=93;DPRA=0;EPP=133.299;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2417;QR=1332;RO=33;RPL=0;RPP=133.299;RPPR=74.6689;RPR=60;RUN=1;SAF=60;SAP=133.299;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:8,7:8:323:7:287:-21.6898,0,-24.9229 0/1:47:4,43:4:161:43:1724:-141.229,0,-0.726487 0/1:18:12,6:12:487:6:244:-16.9203,0,-38.7625 0/1:13:9,4:9:361:4:162:-11.0534,0,-28.939 dDocent_Contig_10289 33 . T A 162.882 . AB=0.25;ABP=18.2106;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=68;DPB=68;DPRA=2.1;EPP=18.2106;EPPR=135.47;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.967213;PAO=0;PQA=0;PQR=0;PRO=0;QA=286;QR=2313;RO=61;RPL=0;RPP=18.2106;RPPR=135.47;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=61;SRP=135.47;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:21,7:21:794:7:286:-17.686,0,-63.3508 0/0:18:18,0:18:667:0:0:0,-5.41854,-60.3506 0/0:19:19,0:19:736:0:0:0,-5.71957,-66.5699 0/0:3:3,0:3:116:0:0:0,-0.90309,-10.8175 dDocent_Contig_10290 21 . C T 1775.01 . AB=0.566038;ABP=7.02548;AC=4;AF=0.5;AN=8;AO=60;CIGAR=1X;DP=106;DPB=106;DPRA=0;EPP=133.299;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=0.933333;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2394;QR=1872;RO=46;RPL=0;RPP=133.299;RPPR=102.898;RPR=60;RUN=1;SAF=60;SAP=133.299;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:40:7,33:7:285:33:1304:-105.576,0,-13.9832 0/1:34:18,16:18:737:16:649:-48.5076,0,-56.4169 0/1:25:17,8:17:689:8:319:-21.5499,0,-54.813 0/1:7:4,3:4:161:3:122:-9.26528,0,-12.7677 dDocent_Contig_10291 36 . T C 569.48 . AB=0.271739;ABP=44.6459;AC=4;AF=0.5;AN=8;AO=25;CIGAR=1X;DP=92;DPB=92;DPRA=0;EPP=57.2971;EPPR=148.499;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.96;PAIREDR=0.940299;PAO=0;PQA=0;PQR=0;PRO=0;QA=1006;QR=2685;RO=67;RPL=0;RPP=57.2971;RPPR=148.499;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=67;SRP=148.499;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:34:29,5:29:1164:5:202:-8.32685,0,-94.8039 0/1:25:15,10:15:597:10:403:-29.103,0,-46.5401 0/1:19:13,6:13:524:6:240:-16.2556,0,-41.7873 0/1:14:10,4:10:400:4:161:-10.6605,0,-32.144 dDocent_Contig_10292 14 . T C 202.355 . AB=0.125926;ABP=167.093;AC=2;AF=0.25;AN=8;AO=23;CIGAR=1X;DP=462;DPB=462;DPRA=0;EPP=52.9542;EPPR=956.287;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=51.369;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.71754;PAO=0;PQA=0;PQR=0;PRO=0;QA=937;QR=17646;RO=439;RPL=0;RPP=52.9542;RPPR=956.287;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=439;SRP=956.287;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:164:162,2:162:6523:2:82:0,-41.5892,-530.062 0/0:163:159,4:159:6414:4:161:0,-34.193,-525.269 0/1:99:85,14:85:3370:14:571:-21.9299,0,-233.99 0/1:36:33,3:33:1339:3:123:-0.627708,0,-90.8445 dDocent_Contig_10293 12 . T C 7133.18 . AB=0.767918;ABP=185.688;AC=4;AF=0.5;AN=8;AO=225;CIGAR=2X;DP=293;DPB=293;DPRA=0;EPP=491.592;EPPR=150.67;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=0.0147059;PAO=0;PQA=0;PQR=0;PRO=0;QA=8980;QR=2735;RO=68;RPL=0;RPP=491.592;RPPR=150.67;RPR=225;RUN=1;SAF=225;SAP=491.592;SAR=0;SRF=68;SRP=150.67;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:94:12,82:12:491:82:3253:-264.535,0,-16.2441 0|1:116:30,86:30:1206:86:3445:-275.166,0,-73.8938 0|1:65:24,41:24:957:41:1635:-127.815,0,-66.8653 0|1:18:2,16:2:81:16:647:-53.1446,0,-2.26719 dDocent_Contig_10295 57 . A G 180.711 . AB=0.171875;ABP=62.8615;AC=2;AF=0.25;AN=8;AO=12;CIGAR=1X;DP=106;DPB=106;DPRA=0.928571;EPP=29.068;EPPR=207.129;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=485;QR=3650;RO=94;RPL=12;RPP=29.068;RPPR=207.129;RPR=0;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=94;SRP=207.129;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:48:39,9:39:1512:9:364:-18.6751,0,-121.875 0/0:28:28,0:28:1075:0:0:0,-8.42884,-97.0269 0/1:16:14,2:14:542:2:80:-2.77531,0,-44.301 0/0:14:13,1:13:521:1:41:0,-0.119853,-43.1397 dDocent_Contig_10296 67 . T C 258.456 . AB=0.142857;ABP=150.36;AC=3;AF=0.375;AN=8;AO=19;CIGAR=1X;DP=171;DPB=171;DPRA=1.16667;EPP=44.2683;EPPR=333.074;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.993421;PAO=0;PQA=0;PQR=0;PRO=0;QA=759;QR=6012;RO=152;RPL=19;RPP=44.2683;RPPR=333.074;RPR=0;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=152;SRP=333.074;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:38:38,0:38:1501:0:0:0,-11.4391,-135.34 0/1:43:32,11:32:1275:11:435:-26.5568,0,-102.07 0/1:73:67,6:67:2654:6:242:-0.181759,0,-217.013 0/1:17:15,2:15:582:2:82:-2.66217,0,-47.5909 dDocent_Contig_10297 189 . T G 651.535 . AB=0.396825;ABP=8.83536;AC=3;AF=0.375;AN=8;AO=25;CIGAR=1X;DP=70;DPB=70;DPRA=3;EPP=57.2971;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.92;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=982;QR=1808;RO=45;RPL=25;RPP=57.2971;RPPR=100.727;RPR=0;RUN=1;SAF=0;SAP=57.2971;SAR=25;SRF=0;SRP=100.727;SRR=45;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:48:26,22:26:1055:22:859:-63.1653,0,-80.7878 0/1:5:4,1:4:158:1:41:-2.58942,0,-13.0935 0/1:10:8,2:8:315:2:82:-4.76938,0,-25.7027 0/0:7:7,0:7:280:0:0:0,-2.10721,-25.5707 dDocent_Contig_10298 40 . C T 351.3 . AB=0.341463;ABP=11.961;AC=2;AF=0.25;AN=8;AO=14;CIGAR=1X;DP=86;DPB=86;DPRA=0.911111;EPP=33.4109;EPPR=159.356;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.986111;PAO=0;PQA=0;PQR=0;PRO=0;QA=557;QR=2885;RO=72;RPL=0;RPP=33.4109;RPPR=159.356;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=72;SRP=159.356;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:15,6:15:593:6:242:-15.8353,0,-47.3827 0/1:20:12,8:12:483:8:315:-22.6926,0,-37.7995 0/0:27:27,0:27:1085:0:0:0,-8.12781,-97.9373 0/0:18:18,0:18:724:0:0:0,-5.41854,-65.4843 dDocent_Contig_10299 12 . C A 30.6138 . AB=0.137931;ABP=36.0317;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=260;DPB=260;DPRA=0.756757;EPP=16.0391;EPPR=520.368;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.712598;PAO=0;PQA=0;PQR=0;PRO=0;QA=227;QR=10214;RO=254;RPL=0;RPP=16.0391;RPPR=554.564;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=250;SRP=520.368;SRR=4;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:98:98,0:98:3951:0:0:0,-29.5009,-355.569 0/0:83:81,2:81:3245:2:81:0,-17.2998,-284.419 0/0:50:50,0:50:2020:0:0:0,-15.0515,-181.984 0/1:29:25,4:25:998:4:146:-4.75997,0,-81.3853 dDocent_Contig_10300 30 . C T 520.135 . AB=0.318182;ABP=21.9613;AC=3;AF=0.375;AN=8;AO=24;CIGAR=1X;DP=108;DPB=108;DPRA=0;EPP=55.1256;EPPR=185.414;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=965;QR=3393;RO=84;RPL=0;RPP=55.1256;RPPR=185.414;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=84;SRP=185.414;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:43:30,13:30:1209:13:520:-34.1999,0,-96.1384 0/0:42:39,3:39:1582:3:121:0,-1.36306,-131.328 0/1:16:14,2:14:562:2:82:-2.9632,0,-46.1027 0/1:7:1,6:1:40:6:242:-20.0501,0,-1.88847 dDocent_Contig_10301 41 . T C 499.931 . AB=0.278481;ABP=36.6819;AC=4;AF=0.5;AN=8;AO=22;CIGAR=1X;DP=79;DPB=79;DPRA=0;EPP=50.7827;EPPR=126.784;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.894737;PAO=0;PQA=0;PQR=0;PRO=0;QA=885;QR=2251;RO=57;RPL=0;RPP=50.7827;RPPR=126.784;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:25,5:25:978:5:202:-9.53118,0,-79.281 0/1:22:17,5:17:672:5:204:-12.1214,0,-54.184 0/1:15:5,10:5:201:10:397:-31.5705,0,-13.9554 0/1:12:10,2:10:400:2:82:-4.16732,0,-32.7467 dDocent_Contig_10302 8 . C A 7087.89 . AB=0.645333;ABP=71.8083;AC=4;AF=0.5;AN=8;AO=242;CIGAR=1X;DP=375;DPB=375;DPRA=0;EPP=528.507;EPPR=291.816;GTI=0;LEN=1;MEANALT=1;MQM=57.938;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.842975;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=9215;QR=5099;RO=133;RPL=0;RPP=528.507;RPPR=291.816;RPR=242;RUN=1;SAF=242;SAP=528.507;SAR=0;SRF=133;SRP=291.816;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:119:27,92:27:1045:92:3492:-278.313,0,-58.5349 0/1:72:29,43:29:1130:43:1645:-126.588,0,-80.3261 0/1:121:56,65:56:2133:65:2471:-185.585,0,-155.774 0/1:63:21,42:21:791:42:1607:-125.7,0,-52.5466 dDocent_Contig_10303 1 . N G 78.5738 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=5;CIGAR=1X;DP=5;DPB=5;DPRA=0;EPP=3.44459;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=16.2;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=197;QR=0;RO=0;RPL=0;RPP=13.8677;RPPR=0;RPR=5;RUN=1;SAF=2;SAP=3.44459;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:76:-0.949687,-0.60206,0 1/1:1:0,1:0:0:1:39:-3.75448,-0.30103,0 1/1:2:0,2:0:0:2:82:-2.65842,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_10304 15 . T G 215.996 . AB=0.175676;ABP=70.6194;AC=2;AF=0.25;AN=8;AO=13;CIGAR=1X;DP=82;DPB=82;DPRA=9.25;EPP=31.2394;EPPR=152.842;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=517;QR=2751;RO=69;RPL=0;RPP=31.2394;RPPR=152.842;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=69;SRP=152.842;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:33:26,7:26:1021:7:282:-15.8186,0,-82.2434 0/1:41:35,6:35:1413:6:235:-9.17868,0,-115.077 0/0:2:2,0:2:82:0:0:0,-0.60206,-7.77968 0/0:6:6,0:6:235:0:0:0,-1.80618,-21.5193 dDocent_Contig_10305 118 . C G 42.505 . AB=0.136364;ABP=78.8144;AC=2;AF=0.25;AN=8;AO=9;CIGAR=4X;DP=95;DPB=95;DPRA=2.27586;EPP=22.5536;EPPR=187.585;GTI=0;LEN=1;MEANALT=1.5;MQM=55.1111;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=298;QR=2849;RO=85;RPL=0;RPP=22.5536;RPPR=187.585;RPR=9;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=187.585;SRR=85;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:23:19,3:19:617:3:101:-2.51482,0,-48.9594 0|1:43:37,6:37:1257:6:197:-5.10153,0,-100.487 0|0:23:23,0:23:767:0:0:0,-6.92369,-69.3406 0|0:6:6,0:6:208:0:0:0,-1.80618,-19.0596 dDocent_Contig_10306 31 . A G 45.2401 . AB=0.106383;ABP=129.51;AC=3;AF=0.375;AN=8;AO=10;CIGAR=1X1M1X;DP=94;DPB=94;DPRA=0;EPP=24.725;EPPR=174.557;GTI=0;LEN=1;MEANALT=1.5;MQM=40.1;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=357;QR=3063;RO=79;RPL=0;RPP=24.725;RPPR=174.557;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=79;SRP=174.557;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:31:27,4,0:27:1071:4,0:145,0:-2.55485,0,-87.3536,-10.6827,-88.5578,-98.9095 0|1:18:16,2,0:16:632:2,0:67,0:-0.865616,0,-51.7974,-5.6821,-52.3995,-57.7438 0|0:20:16,1,3:16:605:1,3:37,116:-4.72906,-6.59371,-55.8638,0,-46.6361,-48.6899 0|1:25:20,3,2:20:755:3,2:108,82:-2.57391,0,-60.9339,-1.80377,-55.0659,-63.089 dDocent_Contig_10307 60 . A G 402.805 . AB=0.320755;ABP=17.8009;AC=2;AF=0.25;AN=8;AO=22;CIGAR=1X;DP=133;DPB=133;DPRA=0;EPP=50.7827;EPPR=244.044;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.972973;PAO=0;PQA=0;PQR=0;PRO=0;QA=839;QR=4376;RO=111;RPL=22;RPP=50.7827;RPPR=244.044;RPR=0;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=111;SRP=244.044;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:32:30,2:30:1174:2:78:0,-2.23018,-98.5316 0/0:48:45,3:45:1792:3:120:0,-3.26175,-150.297 0/1:35:32,3:32:1246:3:118:-0.466669,0,-101.86 0/1:18:4,14:4:164:14:523:-41.9762,0,-9.73136 dDocent_Contig_10308 16 . T G 666.901 . AB=0.258929;ABP=59.5461;AC=4;AF=0.5;AN=8;AO=29;CIGAR=1X;DP=112;DPB=112;DPRA=0;EPP=65.983;EPPR=183.243;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.843373;PAO=0;PQA=0;PQR=0;PRO=0;QA=1171;QR=3347;RO=83;RPL=0;RPP=65.983;RPPR=183.243;RPR=29;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=83;SRP=183.243;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:38:25,13:25:1008:13:529:-36.5171,0,-79.5761 0/1:33:24,9:24:959:9:364:-23.1904,0,-76.6753 0/1:31:25,6:25:1012:6:237:-12.3675,0,-82.0411 0/1:10:9,1:9:368:1:41:-1.08427,0,-30.4751 dDocent_Contig_10309 33 . G C 48.5705 . AB=0.1875;ABP=16.582;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=189;DPB=189;DPRA=0.277457;EPP=9.52472;EPPR=406.904;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=7408;RO=186;RPL=0;RPP=9.52472;RPPR=406.904;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=186;SRP=406.904;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:101:101,0:101:4037:0:0:0,-30.404,-363.307 0/1:16:13,3:13:510:3:122:-6.55601,0,-41.4265 0/0:30:30,0:30:1189:0:0:0,-9.0309,-107.285 0/0:42:42,0:42:1672:0:0:0,-12.6433,-150.709 dDocent_Contig_10310 167 . G A 231.903 . AB=0.333333;ABP=10.2485;AC=3;AF=0.375;AN=8;AO=10;CIGAR=1X;DP=35;DPB=35;DPRA=2;EPP=24.725;EPPR=41.3151;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=405;QR=983;RO=25;RPL=10;RPP=24.725;RPPR=41.3151;RPR=0;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=57.2971;SRR=25;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:8,4:8:307:4:163:-11.4461,0,-24.375 0/1:11:7,4:7:282:4:161:-11.5636,0,-22.4411 0/0:5:5,0:5:191:0:0:0,-1.50515,-17.5549 0/1:7:5,2:5:203:2:81:-5.57852,0,-16.5456 dDocent_Contig_10311 10 . G A 1053.61 . AB=0.320611;ABP=39.627;AC=4;AF=0.5;AN=8;AO=42;CIGAR=1X1M1X;DP=131;DPB=131;DPRA=0;EPP=94.2121;EPPR=189.757;GTI=0;LEN=1;MEANALT=1.5;MQM=59.1667;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.761905;PAIREDR=0.976744;PAO=0;PQA=0;PQR=0;PRO=0;QA=1675;QR=3424;RO=86;RPL=0;RPP=94.2121;RPPR=189.757;RPR=42;RUN=1;SAF=42;SAP=94.2121;SAR=0;SRF=86;SRP=189.757;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:55:38,15:38:1500:15:594:-37.3908,0,-118.89 0|1:26:14,12:14:563:12:482:-35.9056,0,-43.1858 0|1:39:30,9:30:1199:9:354:-20.4531,0,-96.45 0|1:11:4,6:4:162:6:245:-19.01,0,-11.5482 dDocent_Contig_10312 10 . G C 837.179 . AB=0.258621;ABP=61.7149;AC=5;AF=0.625;AN=8;AO=30;CIGAR=1X1M;DP=116;DPB=116;DPRA=0;EPP=68.1545;EPPR=155.013;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.833333;PAIREDR=0.971429;PAO=0;PQA=0;PQR=0;PRO=0;QA=1210;QR=2769;RO=70;RPL=0;RPP=68.1545;RPPR=155.013;RPR=30;RUN=1;SAF=30;SAP=68.1545;SAR=0;SRF=70;SRP=155.013;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:20:5,8,7:5:176:8,7:324,286:-34.5493,-9.33974,-21.2243,-12.4533,0,-24.642 0|1:51:34,4,13:34:1364:4,13:160,522:-32.7775,-29.8331,-141.011,0,-99.2034,-108.47 0|1:33:23,3,7:23:903:3,7:122,284:-16.4966,-13.3568,-86.7016,0,-64.1807,-72.1383 0|1:12:8,1,3:8:326:1,3:40,118:-7.29235,-6.40384,-33.0077,0,-23.607,-25.9981 dDocent_Contig_10313 12 . T A 2400.76 . AB=0.485714;ABP=3.32051;AC=4;AF=0.5;AN=8;AO=85;CIGAR=1X;DP=175;DPB=175;DPRA=0;EPP=187.585;EPPR=198.443;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.376471;PAIREDR=0.944444;PAO=0;PQA=0;PQR=0;PRO=0;QA=3321;QR=3625;RO=90;RPL=0;RPP=187.585;RPPR=198.443;RPR=85;RUN=1;SAF=85;SAP=187.585;SAR=0;SRF=90;SRP=198.443;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:44:20,24:20:791:24:933:-71.0266,0,-58.2577 0/1:61:41,20:41:1656:20:782:-52.3379,0,-130.898 0/1:43:26,17:26:1057:17:686:-49.1261,0,-82.4728 0/1:27:3,24:3:121:24:920:-74.9759,0,-3.15239 dDocent_Contig_10315 12 . T C 107.616 . AB=0.193548;ABP=28.2974;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=88;DPB=88;DPRA=1.66667;EPP=18.2106;EPPR=178.9;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.938272;PAO=0;PQA=0;PQR=0;PRO=0;QA=277;QR=3258;RO=81;RPL=0;RPP=18.2106;RPPR=178.9;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=81;SRP=178.9;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:22:22,0:22:885:0:0:0,-6.62266,-79.9571 0/1:31:25,6:25:1011:6:238:-12.4606,0,-81.9515 0/0:24:23,1:23:918:1:39:0,-3.32816,-79.0257 0/0:11:11,0:11:444:0:0:0,-3.31133,-40.3152 dDocent_Contig_10316 16 . G A 2524.35 . AB=0.563218;ABP=6.03039;AC=5;AF=0.625;AN=8;AO=80;CIGAR=1X;DP=118;DPB=118;DPRA=0;EPP=176.728;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=0.947368;PAO=0;PQA=0;PQR=0;PRO=0;QA=3142;QR=1512;RO=38;RPL=0;RPP=176.728;RPPR=85.5263;RPR=80;RUN=1;SAF=80;SAP=176.728;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:31:0,31:0:0:31:1234:-111.329,-9.33193,0 0/1:20:10,10:10:404:10:392:-29.6098,0,-30.6998 0/1:41:22,19:22:867:19:742:-54.7557,0,-65.9983 0/1:26:6,20:6:241:20:774:-62.1388,0,-14.2399 dDocent_Contig_10317 57 . A C 1063.04 . AB=0.152542;ABP=64.8789;AC=0;AF=0;AN=8;AO=9;CIGAR=1X3M9D1M;DP=113;DPB=75.0714;DPRA=0;EPP=22.5536;EPPR=118.098;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.555556;PAIREDR=0.811321;PAO=0;PQA=0;PQR=0;PRO=0;QA=331;QR=1799;RO=53;RPL=9;RPP=22.5536;RPPR=118.098;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:31:15,0,16:15:519:0,16:0,499:-35.8778,-40.3932,-82.5864,0,-42.5225,-37.7061 0|0:24:9,4,10:9:300:4,10:147,305:-21.6801,-12.3559,-35.4425,0,-12.2313,-21.2481 0|0:23:12,0,11:12:414:0,11:0,355:-25.3383,-28.9507,-62.5956,0,-33.9782,-30.6669 0|0:35:17,5,13:17:566:5,13:184,443:-30.8059,-20.8704,-65.166,0,-30.7248,-41.8648 dDocent_Contig_10318 175 . T A 284.558 . AB=0.21875;ABP=46.9826;AC=1;AF=0.125;AN=8;AO=14;CIGAR=1X;DP=81;DPB=81;DPRA=11.2941;EPP=33.4109;EPPR=148.499;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=542;QR=2608;RO=67;RPL=14;RPP=33.4109;RPPR=148.499;RPR=0;RUN=1;SAF=0;SAP=33.4109;SAR=14;SRF=0;SRP=148.499;SRR=67;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:64:50,14:50:1939:14:542:-29.8535,0,-155.467 0/0:3:3,0:3:111:0:0:0,-0.90309,-10.3532 0/0:6:6,0:6:238:0:0:0,-1.80618,-21.7944 0/0:8:8,0:8:320:0:0:0,-2.40824,-29.1683 dDocent_Contig_10319 111 . C T 56.5498 . AB=0.123711;ABP=122.307;AC=1;AF=0.125;AN=8;AO=29;CIGAR=1X;DP=402;DPB=402;DPRA=1.86339;EPP=65.983;EPPR=810.798;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=971;QR=12657;RO=372;RPL=0;RPP=65.983;RPPR=810.798;RPR=29;RUN=1;SAF=0;SAP=65.983;SAR=29;SRF=0;SRP=810.798;SRR=372;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:107:97,10:97:3294:10:337:0,-1.55402,-266.038 0/0:137:130,7:130:4444:7:231:0,-20.1275,-379.045 0/1:97:84,12:84:2867:12:403:-7.35391,0,-229.04 0/0:61:61,0:61:2052:0:0:0,-18.3628,-184.95 dDocent_Contig_10321 38 . G A 52.2028 . AB=0.181818;ABP=22.3561;AC=2;AF=0.25;AN=8;AO=4;CIGAR=3X;DP=43;DPB=43;DPRA=1.04762;EPP=11.6962;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.871795;PAO=0;PQA=0;PQR=0;PRO=0;QA=161;QR=1462;RO=39;RPL=0;RPP=11.6962;RPPR=87.6977;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:7:6,1:6:231:1:39:-1.78935,0,-19.0504 0|0:16:16,0:16:593:0:0:0,-4.81648,-53.7049 0|1:15:12,3:12:443:3:122:-6.85704,0,-35.6953 0|0:5:5,0:5:195:0:0:0,-1.50515,-17.9239 dDocent_Contig_10322 17 . A G 105.91 . AB=0.222222;ABP=21.1059;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=154;DPB=154;DPRA=0.637795;EPP=16.0391;EPPR=324.388;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.333333;PAIREDR=0.885135;PAO=0;PQA=0;PQR=0;PRO=0;QA=223;QR=5885;RO=148;RPL=0;RPP=16.0391;RPPR=324.388;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=148;SRP=324.388;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:51:51,0:51:2016:0:0:0,-15.3525,-181.644 0/1:27:21,6:21:825:6:223:-12.2899,0,-66.4328 0/0:31:31,0:31:1245:0:0:0,-9.33193,-112.323 0/0:45:45,0:45:1799:0:0:0,-13.5463,-162.122 dDocent_Contig_10323 141 . A G 144.224 . AB=0.228571;ABP=25.4075;AC=2;AF=0.25;AN=8;AO=9;CIGAR=1X;DP=80;DPB=80;DPRA=1.07018;EPP=22.5536;EPPR=155.013;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=341;QR=2758;RO=70;RPL=0;RPP=22.5536;RPPR=155.013;RPR=9;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=155.013;SRR=70;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:26:25,1:25:996:1:36:0,-4.2285,-86.3372 0/1:22:16,5:16:640:5:193:-11.2871,0,-51.5107 0/1:13:10,3:10:402:3:112:-6.53324,0,-32.6263 0/0:19:19,0:19:720:0:0:0,-5.71957,-65.1104 dDocent_Contig_10324 51 . C T 233.237 . AB=0.5;ABP=3.0103;AC=2;AF=0.25;AN=8;AO=10;CIGAR=1M1D2M1X;DP=85;DPB=83;DPRA=0.307692;EPP=24.725;EPPR=163.699;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.986486;PAO=0;PQA=0;PQR=0;PRO=0;QA=356;QR=2818;RO=74;RPL=0;RPP=24.725;RPPR=163.699;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=74;SRP=163.699;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:26:25,0:25:941:0:0:0,-7.52575,-84.6412 0|0:39:39,0:39:1501:0:0:0,-11.7402,-135.36 0|1:16:8,8:8:301:8:282:-20.8999,0,-22.6293 0|1:4:2,2:2:75:2:74:-5.82176,0,-5.91622 dDocent_Contig_10325 1 . N G 1754.82 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=58;CIGAR=1X;DP=58;DPB=58;DPRA=0;EPP=89.2702;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=52.3276;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=0.0862069;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1990;QR=0;RO=0;RPL=0;RPP=128.956;RPPR=0;RPR=58;RUN=1;SAF=5;SAP=89.2702;SAR=53;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:12:0,12:0:0:12:409:-36.7588,-3.61236,0 1/1:15:0,15:0:0:15:550:-47.0317,-4.51545,0 1/1:19:0,19:0:0:19:627:-55.8918,-5.71957,0 1/1:12:0,12:0:0:12:404:-35.198,-3.61236,0 dDocent_Contig_10326 27 . G T 275.609 . AB=0.232143;ABP=37.909;AC=2;AF=0.25;AN=8;AO=13;CIGAR=1X;DP=73;DPB=73;DPRA=3.29412;EPP=31.2394;EPPR=133.299;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=523;QR=2347;RO=60;RPL=0;RPP=31.2394;RPPR=133.299;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:21,3:21:818:3:119:-3.87029,0,-66.7125 0/1:32:22,10:22:875:10:404:-27.0871,0,-69.4303 0/0:8:8,0:8:313:0:0:0,-2.40824,-28.5318 0/0:9:9,0:9:341:0:0:0,-2.70927,-31.039 dDocent_Contig_10327 11 . T A 2112.52 . AB=0.449102;ABP=6.76812;AC=4;AF=0.5;AN=8;AO=75;CIGAR=1X3M1X8M;DP=167;DPB=166.846;DPRA=0;EPP=165.871;EPPR=191.928;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.96;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=2970;QR=3412;RO=87;RPL=0;RPP=165.871;RPPR=191.928;RPR=75;RUN=1;SAF=75;SAP=165.871;SAR=0;SRF=87;SRP=191.928;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:64:34,28,0:34:1341:28,0:1104,0:-80.5835,0,-101.894,-90.8185,-110.323,-201.151 0|1:65:30,34,0:30:1164:34,0:1352,0:-102.273,0,-85.3746,-111.304,-95.6096,-206.93 0|1:19:11,8,0:11:432:8,0:315,0:-22.996,0,-33.5155,-26.3073,-35.9237,-61.8381 0|1:19:12,5,2:12:475:5,2:199,73:-12.7971,0,-37.6147,-10.4556,-33.1609,-48.9455 dDocent_Contig_10328 18 . C G 44.2282 . AB=0.1;ABP=114.19;AC=1;AF=0.125;AN=8;AO=17;CIGAR=1X;DP=295;DPB=295;DPRA=0;EPP=39.9253;EPPR=591.479;GTI=0;LEN=1;MEANALT=1.75;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.98155;PAO=0;PQA=0;PQR=0;PRO=0;QA=687;QR=10926;RO=271;RPL=0;RPP=39.9253;RPPR=591.479;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=271;SRP=591.479;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:98:91,5:91:3672:5:203:0,-10.6508,-311.831 0/1:80:69,8:69:2769:8:326:-6.12178,0,-225.732 0/0:72:68,2:68:2750:2:76:0,-14.2446,-240.378 0/0:45:43,2:43:1735:2:82:0,-5.76667,-148.586 dDocent_Contig_10331 11 . C A 2307.25 . AB=0.425641;ABP=12.3755;AC=4;AF=0.5;AN=8;AO=83;CIGAR=1X1M1D8M;DP=195;DPB=187.455;DPRA=0;EPP=183.243;EPPR=226.672;GTI=0;LEN=1;MEANALT=2;MQM=59.3253;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.939759;PAIREDR=0.621359;PAO=0;PQA=0;PQR=0;PRO=0;QA=3275;QR=4037;RO=103;RPL=0;RPP=183.243;RPPR=226.672;RPR=83;RUN=1;SAF=83;SAP=183.243;SAR=0;SRF=103;SRP=226.672;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:75:42,29,4:42:1650:29,4:1166,158:-83.4426,0,-126.975,-83.0867,-122.705,-217.584 0|1:59:29,27,3:29:1143:27,3:1038,114:-76.1865,0,-85.9225,-75.5693,-84.7042,-168.709 0|1:23:7,15,0:7:272:15,0:601,0:-47.3944,0,-17.8166,-49.5016,-22.3321,-71.8484 0|1:38:25,12,1:25:972:12,1:470,41:-31.0991,0,-76.2416,-35.2394,-76.4691,-114.811 dDocent_Contig_10332 12 . A C 71.708 . AB=0.132075;ABP=65.3275;AC=2;AF=0.25;AN=8;AO=7;CIGAR=1X;DP=114;DPB=114;DPRA=0.868852;EPP=18.2106;EPPR=235.358;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=286;QR=4310;RO=107;RPL=0;RPP=18.2106;RPPR=235.358;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=107;SRP=235.358;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:50:50,0:50:2010:0:0:0,-15.0515,-181.091 0/0:11:11,0:11:440:0:0:0,-3.31133,-39.952 0/1:32:28,4:28:1126:4:163:-5.42547,0,-91.9905 0/1:21:18,3:18:734:3:123:-5.14316,0,-60.0616 dDocent_Contig_10333 83 . C T 355.273 . AB=0.298246;ABP=23.1631;AC=3;AF=0.375;AN=8;AO=17;CIGAR=1X;DP=61;DPB=61;DPRA=4.75;EPP=39.9253;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=606;QR=1515;RO=44;RPL=17;RPP=39.9253;RPPR=98.5551;RPR=0;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:20,2:20:687:2:70:-0.0246669,0,-55.5252 0/1:27:13,14:13:443:14:500:-37.2086,0,-32.0668 0/1:8:7,1:7:243:1:36:-1.19004,0,-19.8003 0/0:4:4,0:4:142:0:0:0,-1.20412,-13.1292 dDocent_Contig_10334 11 . C A 599.333 . AB=0.268817;ABP=46.1829;AC=2;AF=0.25;AN=8;AO=26;CIGAR=1X;DP=148;DPB=148;DPRA=1.42857;EPP=59.4686;EPPR=267.93;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.884615;PAIREDR=0.713115;PAO=0;PQA=0;PQR=0;PRO=0;QA=1047;QR=4737;RO=122;RPL=0;RPP=59.4686;RPPR=267.93;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=122;SRP=267.93;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:46:34,12:34:1325:12:477:-29.433,0,-105.671 0/1:47:34,13:34:1328:13:530:-33.8982,0,-105.641 0/0:27:26,1:26:999:1:40:0,-4.13213,-86.2136 0/0:28:28,0:28:1085:0:0:0,-8.42884,-97.9415 dDocent_Contig_10335 107 . N G 154.259 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=5;CIGAR=1X;DP=5;DPB=5;DPRA=0;EPP=13.8677;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=161;QR=0;RO=0;RPL=0;RPP=13.8677;RPPR=0;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:61:-5.79353,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:100:-9.33053,-0.90309,0 dDocent_Contig_10336 111 . A T 168.023 . AB=0.346154;ABP=8.35546;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X;DP=71;DPB=71;DPRA=1.73333;EPP=22.5536;EPPR=137.642;GTI=0;LEN=1;MEANALT=1;MQM=40;MQMR=46.5323;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=295;QR=2206;RO=62;RPL=0;RPP=22.5536;RPPR=137.642;RPR=9;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=137.642;SRR=62;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:17,9:17:610:9:295:-18.2,0,-46.7295 0/0:26:26,0:26:913:0:0:0,-7.82678,-81.8462 0/0:17:17,0:17:611:0:0:0,-5.11751,-54.8369 0/0:2:2,0:2:72:0:0:0,-0.60206,-6.56353 dDocent_Contig_10337 132 . G T 125.522 . AB=0.263158;ABP=12.2676;AC=1;AF=0.125;AN=8;AO=5;CIGAR=6M1X2M;DP=73;DPB=71.4444;DPRA=0.76;EPP=13.8677;EPPR=135.47;GTI=0;LEN=1;MEANALT=1;MQM=46.8;MQMR=46.9344;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=147;QR=2022;RO=61;RPL=0;RPP=13.8677;RPPR=135.47;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=135.47;SRR=61;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:19:14,0,5:14:471:0,5:0,147:-7.70663,-11.9211,-49.8639,0,-38.2459,-36.7408 0|0:25:24,1,0:24:800:1,0:34,0:0,-4.15231,-68.5167,-7.22472,-68.8177,-71.553 0|0:23:19,4,0:19:613:4,0:137,0:-5.64105,0,-48.2303,-11.3606,-49.4345,-60.4588 0|0:6:4,2,0:4:138:2,0:68,0:-4.60213,0,-10.8643,-5.80625,-11.4663,-16.9336 dDocent_Contig_10339 158 . G A 177.351 . AB=0.692308;ABP=7.18621;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X;DP=51;DPB=51;DPRA=1.02632;EPP=14.8328;EPPR=43.5445;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=253;QR=1409;RO=42;RPL=1;RPP=14.8328;RPPR=43.5445;RPR=8;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=94.2121;SRR=42;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:4,9:4:152:9:253:-19.1331,0,-10.1364 0/0:11:11,0:11:402:0:0:0,-3.31133,-36.5196 0/0:18:18,0:18:535:0:0:0,-5.41854,-48.4223 0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1398 dDocent_Contig_10340 9 . A G 862.569 . AB=0.44;ABP=4.57376;AC=5;AF=0.625;AN=8;AO=31;CIGAR=1X;DP=59;DPB=59;DPRA=0;EPP=70.3259;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.774194;PAIREDR=0.892857;PAO=0;PQA=0;PQR=0;PRO=0;QA=1170;QR=1086;RO=28;RPL=0;RPP=70.3259;RPPR=63.8115;RPR=31;RUN=1;SAF=31;SAP=70.3259;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:10,5:10:389:5:167:-10.8389,0,-30.8529 1/1:9:0,9:0:0:9:346:-31.4992,-2.70927,0 0/1:22:11,11:11:424:11:425:-31.9812,0,-31.891 0/1:13:7,6:7:273:6:232:-17.3355,0,-21.0246 dDocent_Contig_10341 48 . T C 667.325 . AB=0.511111;ABP=3.05855;AC=2;AF=0.25;AN=8;AO=24;CIGAR=1X;DP=86;DPB=86;DPRA=1.71429;EPP=55.1256;EPPR=137.642;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.935484;PAO=0;PQA=0;PQR=0;PRO=0;QA=962;QR=2488;RO=62;RPL=0;RPP=55.1256;RPPR=137.642;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:33:14,19:14:563:19:766:-59.327,0,-41.0768 0/0:14:14,0:14:570:0:0:0,-4.21442,-51.6416 0/1:12:8,4:8:315:4:156:-10.8035,0,-25.1008 0/0:27:26,1:26:1040:1:40:0,-4.13213,-89.8953 dDocent_Contig_10342 13 . C T 140.625 . AB=0.5;ABP=3.0103;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=57;DPB=57;DPRA=2;EPP=18.2106;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.857143;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=283;QR=1989;RO=50;RPL=0;RPP=18.2106;RPPR=111.584;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:5,5:5:201:5:201:-15.4602,0,-15.4606 0/0:28:26,2:26:1027:2:82:0,-0.649162,-84.9436 0/0:7:7,0:7:283:0:0:0,-2.10721,-25.843 0/0:12:12,0:12:478:0:0:0,-3.61236,-43.3685 dDocent_Contig_10343 26 . A C 184.516 . AB=0.157303;ABP=93.7974;AC=3;AF=0.375;AN=8;AO=15;CIGAR=1X;DP=120;DPB=120;DPRA=0;EPP=35.5824;EPPR=231.015;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.809524;PAO=0;PQA=0;PQR=0;PRO=0;QA=578;QR=3917;RO=105;RPL=0;RPP=35.5824;RPPR=231.015;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=105;SRP=231.015;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:53:43,10:43:1593:10:393:-19.7735,0,-127.682 0/0:31:30,1:30:1109:1:39:0,-5.43537,-96.2044 0/1:27:24,3:24:920:3:106:-1.75808,0,-74.9866 0/1:9:8,1:8:295:1:40:-1.28641,0,-24.1899 dDocent_Contig_10344 15 . A T 1437.96 . AB=0.42623;ABP=8.77716;AC=4;AF=0.5;AN=8;AO=52;CIGAR=1X;DP=122;DPB=122;DPRA=0;EPP=115.927;EPPR=155.013;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.961538;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2073;QR=2783;RO=70;RPL=0;RPP=115.927;RPPR=155.013;RPR=52;RUN=1;SAF=52;SAP=115.927;SAR=0;SRF=70;SRP=155.013;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:35:21,14:21:841:14:563:-40.4768,0,-65.4676 0/1:29:19,10:19:760:10:385:-26.2707,0,-59.9939 0/1:45:20,25:20:797:25:1013:-77.917,0,-58.4993 0/1:13:10,3:10:385:3:112:-6.5294,0,-31.0869 dDocent_Contig_10345 88 . G T 35.0131 . AB=0.16129;ABP=33.9012;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=76;DPB=76;DPRA=2.06667;EPP=13.8677;EPPR=155.013;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.871429;PAO=0;PQA=0;PQR=0;PRO=0;QA=158;QR=2372;RO=70;RPL=5;RPP=13.8677;RPPR=155.013;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=70;SRP=155.013;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:32:31,0:31:1055:0:0:0,-9.33193,-95.1975 0/1:31:26,5:26:877:5:158:-5.2001,0,-69.9073 0/0:5:5,0:5:168:0:0:0,-1.50515,-15.4511 0/0:8:8,0:8:272:0:0:0,-2.40824,-24.8116 dDocent_Contig_10346 9 . A C 970.805 . AB=0.474359;ABP=3.45573;AC=4;AF=0.5;AN=8;AO=37;CIGAR=1X;DP=78;DPB=78;DPRA=0;EPP=83.3548;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=0.837838;PAIREDR=0.634146;PAO=0;PQA=0;PQR=0;PRO=0;QA=1406;QR=1344;RO=41;RPL=0;RPP=83.3548;RPPR=92.0407;RPR=37;RUN=1;SAF=37;SAP=83.3548;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:18,6:18:576:6:224:-13.2947,0,-44.923 0/1:23:9,14:9:292:14:530:-41.1164,0,-19.6738 0/1:16:5,11:5:172:11:422:-33.5165,0,-11.0008 0/1:15:9,6:9:304:6:230:-16.5509,0,-23.1738 dDocent_Contig_10347 98 . N A 65.5375 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=69;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:69:-6.55266,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_10348 89 . T A 103.498 . AB=0.225806;ABP=23.254;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=65;DPB=65;DPRA=1.82353;EPP=18.2106;EPPR=128.956;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.4828;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=232;QR=1981;RO=58;RPL=7;RPP=18.2106;RPPR=128.956;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:24,7:24:812:7:232:-11.8726,0,-63.5024 ./.:.:.:.:.:.:.:. 0/0:21:21,0:21:729:0:0:0,-6.32163,-65.9326 0/0:13:13,0:13:440:0:0:0,-3.91339,-39.9251 dDocent_Contig_10349 29 . C T 2434.68 . AB=0.502994;ABP=3.0233;AC=4;AF=0.5;AN=8;AO=84;CIGAR=1X;DP=167;DPB=167;DPRA=0;EPP=185.414;EPPR=183.243;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3332;QR=3319;RO=83;RPL=0;RPP=185.414;RPPR=183.243;RPR=84;RUN=1;SAF=84;SAP=185.414;SAR=0;SRF=83;SRP=183.243;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:59:26,33:26:1026:33:1321:-101.395,0,-74.8751 0/1:52:40,12:40:1611:12:474:-27.3563,0,-129.569 0/1:27:12,15:12:481:15:589:-45.222,0,-35.5141 0/1:29:5,24:5:201:24:948:-76.8918,0,-9.74102 dDocent_Contig_10350 14 . C A 109.874 . AB=0.15;ABP=66.8516;AC=3;AF=0.375;AN=8;AO=9;CIGAR=1X;DP=73;DPB=73;DPRA=1.53846;EPP=22.5536;EPPR=141.985;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=352;QR=2551;RO=64;RPL=0;RPP=22.5536;RPPR=141.985;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=64;SRP=141.985;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:25,4:25:994:4:156:-5.68657,0,-81.032 0/1:19:15,4:15:590:4:156:-8.69614,0,-47.7187 0/1:12:11,1:11:435:1:40:-0.383319,0,-35.8926 0/0:13:13,0:13:532:0:0:0,-3.91339,-48.2261 dDocent_Contig_10351 13 . T A 413.361 . AB=0.111111;ABP=38.4777;AC=4;AF=0.5;AN=8;AO=3;CIGAR=3M1X;DP=80;DPB=80;DPRA=0;EPP=9.52472;EPPR=115.927;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=4;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=118;QR=2069;RO=52;RPL=0;RPP=9.52472;RPPR=115.927;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:27:19,6,2,0,0:19:757:6,2,0,0:240,82,0,0:-13.9542,0,-60.5177,-12.9028,-55.5547,-74.635,-19.6738,-62.3239,-75.2371,-82.0061,-19.6738,-62.3239,-75.2371,-82.0061,-82.0061 0|1:16:9,4,0,3,0:9:354:4,0,3,0:162,0,122,0:-10.582,0,-27.9042,-13.2913,-29.1083,-42.4032,-3.22659,-19.0417,-32.338,-31.4349,-13.2913,-29.1083,-42.4032,-32.338,-42.4032 0|1:27:21,1,1,0,3:21:836:1,1,0,3:40,41,0,118:-3.38018,-6.4074,-74.9422,-6.3154,-71.8587,-74.8518,-9.70181,-75.2432,-75.1529,-78.5374,0,-65.5372,-65.4467,-68.8313,-67.9282 0|1:10:3,7,0,0,0:3:122:7,0,0,0:261,0,0,0:-20.813,0,-8.36219,-21.7161,-10.4694,-31.7895,-21.7161,-10.4694,-31.7895,-31.7895,-21.7161,-10.4694,-31.7895,-31.7895,-31.7895 dDocent_Contig_10352 23 . T A 137.269 . AB=0.233333;ABP=21.5402;AC=2;AF=0.25;AN=8;AO=7;CIGAR=1X1M1X;DP=43;DPB=43;DPRA=2.30769;EPP=18.2106;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.805556;PAO=0;PQA=0;PQR=0;PRO=0;QA=282;QR=1425;RO=36;RPL=0;RPP=18.2106;RPPR=81.1833;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:15:12,3:12:470:3:121:-6.76475,0,-38.132 0|0:7:7,0:7:273:0:0:0,-2.10721,-24.9326 0|1:15:11,4:11:439:4:161:-10.36,0,-35.3505 0|0:6:6,0:6:243:0:0:0,-1.80618,-22.2482 dDocent_Contig_10353 25 . A C 664.092 . AB=0.46;ABP=3.70517;AC=2;AF=0.25;AN=8;AO=24;CIGAR=1X;DP=76;DPB=76;DPRA=1.77778;EPP=55.1256;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=976;QR=2065;RO=52;RPL=0;RPP=55.1256;RPPR=115.927;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:14,16:14:570:16:648:-49.6217,0,-42.6113 0/0:12:12,0:12:483:0:0:0,-3.61236,-43.8211 0/1:20:13,7:13:496:7:287:-20.1846,0,-38.9562 0/0:14:13,1:13:516:1:41:0,-0.119853,-42.689 dDocent_Contig_10354 163 . C A 96.5655 . AB=0.150943;ABP=59.0998;AC=3;AF=0.375;AN=8;AO=8;CIGAR=1X;DP=54;DPB=54;DPRA=17.6667;EPP=20.3821;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=328;QR=1798;RO=46;RPL=8;RPP=20.3821;RPPR=102.898;RPR=0;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=102.898;SRR=46;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:19,4:19:728:4:164:-8.22621,0,-58.9172 0/1:20:18,2:18:713:2:82:-1.75908,0,-58.4754 0/1:10:8,2:8:316:2:82:-4.76938,0,-25.7936 0/0:1:1,0:1:41:0:0:0,-0.30103,-4.09457 dDocent_Contig_10355 24 . T C 2278.83 . AB=0.125581;ABP=2097.4;AC=4;AF=0.5;AN=8;AO=216;CIGAR=1X;DP=1720;DPB=1720;DPRA=0;EPP=472.048;EPPR=3240.68;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=58.941;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.987928;PAO=0;PQA=0;PQR=0;PRO=0;QA=8331;QR=56734;RO=1491;RPL=0;RPP=472.048;RPPR=3240.68;RPR=216;RUN=1;SAF=216;SAP=472.048;SAR=0;SRF=1491;SRP=3240.68;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:458:390,66:390:14849:66:2570:-93.8207,0,-1162.41 0/1:434:372,57:372:14166:57:2202:-68.8659,0,-1133.56 0/1:547:488,55:488:18572:55:2114:-26.6525,0,-1494.83 0/1:281:241,38:241:9147:38:1445:-45.9418,0,-726.668 dDocent_Contig_10356 119 . G T 760.391 . AB=0.438356;ABP=5.41974;AC=5;AF=0.625;AN=8;AO=34;CIGAR=1X;DP=75;DPB=75;DPRA=0;EPP=76.8404;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1135;QR=1316;RO=40;RPL=0;RPP=76.8404;RPPR=89.8692;RPR=34;RUN=1;SAF=0;SAP=76.8404;SAR=34;SRF=0;SRP=89.8692;SRR=40;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:5,13:5:165:13:436:-33.8032,0,-9.41846 0/1:30:24,6:24:766:6:194:-8.74691,0,-60.2054 0/1:24:11,13:11:385:13:437:-32.4288,0,-27.7616 1/1:2:0,2:0:0:2:68:-6.45788,-0.60206,0 dDocent_Contig_10357 15 . A G 38.543 . AB=0.119048;ABP=55.9529;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=169;DPB=169;DPRA=2.98039;EPP=20.3821;EPPR=352.617;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=0.875;PAIREDR=0.770186;PAO=0;PQA=0;PQR=0;PRO=0;QA=317;QR=6380;RO=161;RPL=0;RPP=20.3821;RPPR=352.617;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=161;SRP=352.617;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:69:67,2:67:2638:2:79:0,-13.2734,-230.056 0/1:42:37,5:37:1471:5:198:-5.55321,0,-120 0/0:41:40,1:40:1596:1:40:0,-8.34655,-139.878 0/0:17:17,0:17:675:0:0:0,-5.11751,-61.0814 dDocent_Contig_10358 66 . G C 89.1968 . AB=0.263158;ABP=12.2676;AC=2;AF=0.25;AN=8;AO=5;CIGAR=1X;DP=33;DPB=33;DPRA=1.35714;EPP=13.8677;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=192;QR=1072;RO=28;RPL=5;RPP=13.8677;RPPR=63.8115;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:7:7,0:7:267:0:0:0,-2.10721,-24.3922 0/1:6:3,3:3:114:3:117:-9.1042,0,-8.8258 0/1:13:11,2:11:423:2:75:-3.20671,0,-34.5101 0/0:7:7,0:7:268:0:0:0,-2.10721,-24.483 dDocent_Contig_10359 7 . A T 503.686 . AB=0.293333;ABP=30.8341;AC=2;AF=0.25;AN=8;AO=25;CIGAR=1X;DP=120;DPB=120;DPRA=0;EPP=57.2971;EPPR=209.3;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=953;QR=3579;RO=95;RPL=0;RPP=57.2971;RPPR=209.3;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=95;SRP=209.3;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:31:29,2:29:1117:2:77:0,-2.02279,-93.5239 0/1:45:26,19:26:986:19:725:-52.0336,0,-75.4996 0/1:30:27,3:27:991:3:113:-1.50807,0,-80.4612 0/0:14:13,1:13:485:1:38:0,-0.417151,-40.1943 dDocent_Contig_10360 59 . T C 345.959 . AB=0.298246;ABP=23.1631;AC=1;AF=0.125;AN=8;AO=17;CIGAR=1X;DP=93;DPB=93;DPRA=4.75;EPP=39.9253;EPPR=168.042;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=587;QR=2653;RO=76;RPL=17;RPP=39.9253;RPPR=168.042;RPR=0;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=76;SRP=168.042;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:57:40,17:40:1402:17:587:-35.9935,0,-109.317 0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0978 0/0:2:2,0:2:70:0:0:0,-0.60206,-6.64733 0/0:21:21,0:21:717:0:0:0,-6.32163,-64.8432 dDocent_Contig_10361 10 . A T 1995.37 . AB=0.136054;ABP=172.134;AC=0;AF=0;AN=8;AO=20;CIGAR=1M1I2M3X;DP=178;DPB=195.667;DPRA=0;EPP=46.4397;EPPR=159.356;GTI=0;LEN=1;MEANALT=3;MQM=16.95;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=0.986111;PAO=0;PQA=0;PQR=0;PRO=0;QA=781;QR=2701;RO=72;RPL=0;RPP=46.4397;RPPR=159.356;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=72;SRP=159.356;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:72:30,10,0,32:30:1113:10,0,32:386,0,1114:-81.6661,-77.5862,-165.659,-90.697,-168.669,-181.795,0,-78.1125,-91.2156,-81.5826 0|0:40:6,7,1,26:6:219:7,1,26:275,40,956:-76.462,-69.0949,-84.879,-74.9911,-83.7102,-92.5878,0,-8.84235,-14.6752,-10.1329 0|0:35:19,3,6,6:19:723:3,6,6:120,231,218:-13.194,-16.8945,-75.3063,0,-57.336,-57.5686,-1.08033,-58.409,-41.5669,-58.6412 0|0:31:17,0,0,13:17:646:0,0,13:0,0,495:-35.6038,-40.7213,-93.7035,-40.7213,-93.7035,-93.7035,0,-53.0968,-53.0968,-49.1834 dDocent_Contig_10362 113 . G A 765.614 . AB=0.421687;ABP=7.43173;AC=4;AF=0.5;AN=8;AO=35;CIGAR=1X;DP=83;DPB=83;DPRA=0;EPP=79.0118;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=59.4286;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.971429;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1197;QR=1604;RO=48;RPL=0;RPP=79.0118;RPPR=107.241;RPR=35;RUN=1;SAF=0;SAP=79.0118;SAR=35;SRF=0;SRP=107.241;SRR=48;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:17,5:17:553:5:173:-9.28755,0,-43.4572 0/1:27:10,17:10:346:17:588:-45.1186,0,-23.3466 0/1:13:6,7:6:203:7:241:-18.0052,0,-14.6887 0/1:21:15,6:15:502:6:195:-11.548,0,-39.1784 dDocent_Contig_10363 38 . A G 962.331 . AB=0.454545;ABP=4.39215;AC=4;AF=0.5;AN=8;AO=35;CIGAR=1X;DP=77;DPB=77;DPRA=0;EPP=79.0118;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1393;QR=1669;RO=42;RPL=0;RPP=79.0118;RPPR=94.2121;RPR=35;RUN=1;SAF=35;SAP=79.0118;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:12,15:12:490:15:601:-46.3003,0,-36.3233 0/1:17:8,9:8:314:9:353:-27.0108,0,-23.505 0/1:21:13,8:13:503:8:324:-23.2076,0,-39.2911 0/1:12:9,3:9:362:3:115:-7.11237,0,-29.3318 dDocent_Contig_10364 46 . C T 51.5808 . AB=0.2;ABP=14.7363;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=59;DPB=59;DPRA=1.02273;EPP=9.52472;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=2206;RO=56;RPL=0;RPP=9.52472;RPPR=124.613;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:14:14,0:14:559:0:0:0,-4.21442,-50.653 0/1:15:12,3:12:485:3:122:-6.85704,0,-39.4855 0/0:23:23,0:23:888:0:0:0,-6.92369,-80.2224 0/0:7:7,0:7:274:0:0:0,-2.10721,-25.0233 dDocent_Contig_10365 20 . C G 278.159 . AB=0.315789;ABP=8.61041;AC=1;AF=0.125;AN=8;AO=6;CIGAR=9M1X3M1I2M1X;DP=65;DPB=65.4375;DPRA=0;EPP=16.0391;EPPR=102.898;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.804348;PAO=0;PQA=0;PQR=0;PRO=0;QA=226;QR=1804;RO=46;RPL=0;RPP=16.0391;RPPR=102.898;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:19:10,3,6:10:393:3,6:120,226:-15.4942,-8.61155,-40.0425,0,-22.4317,-30.5124 0|0:23:19,3,0:19:739:3,0:113,0:-3.51395,0,-59.8057,-9.23352,-60.7088,-69.9654 0|0:13:8,5,0:8:317:5,0:197,0:-14.1921,0,-24.9836,-16.6003,-26.4887,-42.6946 0|0:10:9,1,0:9:355:1,0:40,0:-0.985379,0,-29.3012,-3.69465,-29.6022,-32.8979 dDocent_Contig_10366 88 . A T 89.8656 . AB=0.21875;ABP=24.9965;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=89;DPB=89;DPRA=1.61765;EPP=20.3821;EPPR=178.9;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.740741;PAO=0;PQA=0;PQR=0;PRO=0;QA=253;QR=2751;RO=81;RPL=8;RPP=20.3821;RPPR=178.9;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=81;SRP=178.9;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:32:25,7:25:868:7:219:-10.3845,0,-68.805 0/0:13:13,0:13:448:0:0:0,-3.91339,-40.6496 0/0:23:22,1:22:727:1:34:0,-3.52478,-62.3392 0/0:21:21,0:21:708:0:0:0,-6.32163,-64.0361 dDocent_Contig_10367 37 . A G 80.7403 . AB=0.179487;ABP=37.8095;AC=2;AF=0.25;AN=8;AO=7;CIGAR=1X;DP=66;DPB=66;DPRA=1.44444;EPP=18.2106;EPPR=131.127;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=250;QR=2138;RO=59;RPL=0;RPP=18.2106;RPPR=131.127;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=59;SRP=131.127;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:26:26,0:26:941:0:0:0,-7.82678,-84.9932 0/1:27:22,5:22:793:5:185:-8.88165,0,-63.5617 0/1:12:10,2:10:367:2:65:-2.56093,0,-29.7654 0/0:1:1,0:1:37:0:0:0,-0.30103,-3.69783 dDocent_Contig_10368 65 . G A 36.0839 . AB=0.166667;ABP=20.3821;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=87;DPB=87;DPRA=0.611111;EPP=11.6962;EPPR=183.243;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.75;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=153;QR=3163;RO=83;RPL=4;RPP=11.6962;RPPR=183.243;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=83;SRP=183.243;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:53:53,0:53:2008:0:0:0,-15.9546,-180.946 0/1:18:15,3:15:576:3:115:-5.30649,0,-46.7601 0/0:15:14,1:14:540:1:38:0,-0.718181,-45.1464 0/0:1:1,0:1:39:0:0:0,-0.30103,-3.89656 dDocent_Contig_10369 107 . N G 327.037 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=11;CIGAR=1X;DP=11;DPB=11;DPRA=0;EPP=26.8965;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=4;NUMALT=1;ODDS=3.38813e-21;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=343;QR=0;RO=0;RPL=0;RPP=26.8965;RPPR=0;RPR=11;RUN=1;SAF=0;SAP=26.8965;SAR=11;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:52:-4.93868,-0.60206,0 1/1:5:0,5:0:0:5:158:-14.5309,-1.50515,0 1/1:2:0,2:0:0:2:68:-6.45788,-0.60206,0 1/1:2:0,2:0:0:2:65:-6.17329,-0.60206,0 dDocent_Contig_10372 97 . G T 48.5854 . AB=0.208333;ABP=20.744;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=35;DPB=35;DPRA=1.09091;EPP=13.8677;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=166;QR=1044;RO=30;RPL=5;RPP=13.8677;RPPR=68.1545;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:11,0:11:384:0:0:0,-3.31133,-34.8956 0/1:9:7,2:7:241:2:69:-3.84339,0,-19.3173 0/1:15:12,3:12:419:3:97:-4.53553,0,-33.529 ./.:.:.:.:.:.:.:. dDocent_Contig_10373 39 . A C 203.61 . AB=0.204082;ABP=40.2799;AC=1;AF=0.125;AN=8;AO=10;CIGAR=1X;DP=265;DPB=265;DPRA=0.680556;EPP=24.725;EPPR=556.736;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=405;QR=10190;RO=255;RPL=0;RPP=24.725;RPPR=556.736;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=255;SRP=556.736;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:105:105,0:105:4185:0:0:0,-31.6081,-376.618 0/1:49:39,10:39:1552:10:405:-22.0599,0,-125.171 0/0:68:68,0:68:2730:0:0:0,-20.47,-245.814 0/0:43:43,0:43:1723:0:0:0,-12.9443,-155.289 dDocent_Contig_10374 11 . A C 144.871 . AB=0.172414;ABP=57.0725;AC=3;AF=0.375;AN=8;AO=11;CIGAR=1X3M1X;DP=72;DPB=72;DPRA=0;EPP=26.8965;EPPR=135.47;GTI=0;LEN=1;MEANALT=1;MQM=58.7273;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.909091;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=442;QR=2437;RO=61;RPL=0;RPP=26.8965;RPPR=135.47;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=61;SRP=135.47;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:20:17,3:17:673:3:122:-5.35189,0,-54.8789 0|1:19:15,4:15:600:4:160:-9.06444,0,-48.6204 0|0:14:13,1:13:522:1:40:0,-0.311734,-43.4251 0|1:19:16,3:16:642:3:120:-5.46812,0,-52.3959 dDocent_Contig_10376 36 . T C 1639.6 . AB=0.238095;ABP=28.0339;AC=3;AF=0.375;AN=8;AO=11;CIGAR=3M1X4M1X2M;DP=96;DPB=96.7273;DPRA=0;EPP=26.8965;EPPR=65.983;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=429;QR=1148;RO=29;RPL=0;RPP=26.8965;RPPR=65.983;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:45:15,0,0,30:15:590:0,0,30:0,0,1178:-92.7474,-97.2629,-145.795,-97.2629,-145.795,-145.795,0,-48.9249,-48.9249,-39.894 1|0:42:9,4,10,19:9:360:4,10,19:151,388,775:-63.4575,-53.7943,-82.2455,-34.2949,-51.5778,-60.9394,-2.21277,-19.5016,0,-26.1546 0|0:8:5,0,0,3:5:198:0,0,3:0,0,123:-9.05655,-10.5617,-26.8499,-10.5617,-26.8499,-26.8499,0,-16.6924,-16.6924,-15.7893 1|1:1:0,0,1,0:0:0:0,1,0:0,41,0:-4.09457,-4.09457,-4.09457,-0.30103,-0.30103,0,-4.09457,-4.09457,-0.30103,-4.09457 dDocent_Contig_10377 10 . A G 71.2931 . AB=0.181818;ABP=22.3561;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=48;DPB=48;DPRA=2.53846;EPP=11.6962;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.909091;PAO=0;PQA=0;PQR=0;PRO=0;QA=164;QR=1708;RO=44;RPL=0;RPP=11.6962;RPPR=98.5551;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:18,4:18:685:4:164:-8.52724,0,-55.3529 0/0:11:11,0:11:442:0:0:0,-3.31133,-40.136 0/0:8:8,0:8:311:0:0:0,-2.40824,-28.3525 0/0:7:7,0:7:270:0:0:0,-2.10721,-24.6626 dDocent_Contig_10378 92 . T A 59.7476 . AB=0.166667;ABP=43.5445;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=108;DPB=108;DPRA=1.90909;EPP=18.2106;EPPR=222.329;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=219;QR=3575;RO=101;RPL=7;RPP=18.2106;RPPR=222.329;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=101;SRP=222.329;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:42:35,7:35:1234:7:219:-7.3727,0,-98.7199 0/0:36:36,0:36:1284:0:0:0,-10.8371,-115.864 0/0:11:11,0:11:384:0:0:0,-3.31133,-34.8939 0/0:19:19,0:19:673:0:0:0,-5.71957,-60.897 dDocent_Contig_10380 154 . G A 46.7708 . AB=0.172414;ABP=30.0414;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=86;DPB=86;DPRA=1.52632;EPP=13.8677;EPPR=178.9;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=161;QR=3129;RO=81;RPL=0;RPP=13.8677;RPPR=178.9;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=178.9;SRR=81;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:24,5:24:940:5:161:-6.075,0,-76.1667 0/0:28:28,0:28:1078:0:0:0,-8.42884,-97.3087 0/0:22:22,0:22:837:0:0:0,-6.62266,-75.634 0/0:7:7,0:7:274:0:0:0,-2.10721,-25.0251 dDocent_Contig_10381 12 . A G 650.441 . AB=0.296703;ABP=35.6778;AC=3;AF=0.375;AN=8;AO=29;CIGAR=1X;DP=133;DPB=133;DPRA=0;EPP=65.983;EPPR=228.843;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.965517;PAIREDR=0.913462;PAO=0;PQA=0;PQR=0;PRO=0;QA=1155;QR=4183;RO=104;RPL=0;RPP=65.983;RPPR=228.843;RPR=29;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=104;SRP=228.843;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:42:40,2:40:1614:2:80:0,-5.05168,-137.899 0/1:29:23,6:23:914:6:238:-13.064,0,-73.8303 0/1:43:29,14:29:1165:14:562:-37.9796,0,-92.184 0/1:19:12,7:12:490:7:275:-19.3985,0,-38.7316 dDocent_Contig_10382 67 . C T 76.8682 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:81:-7.68573,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_10383 48 . C A 135.676 . AB=0.25;ABP=7.35324;AC=3;AF=0.375;AN=8;AO=5;CIGAR=1X;DP=56;DPB=56;DPRA=0.244444;EPP=6.91895;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.2;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=185;QR=2059;RO=51;RPL=0;RPP=13.8677;RPPR=113.755;RPR=5;RUN=1;SAF=1;SAP=6.91895;SAR=4;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:114:-10.6311,-0.90309,0 0/0:36:36,0:36:1449:0:0:0,-10.8371,-130.659 0/1:8:6,2:6:243:2:71:-4.33382,0,-19.8397 0/0:9:9,0:9:367:0:0:0,-2.70927,-33.3953 dDocent_Contig_10385 17 . T A 207.322 . AB=0.15;ABP=45.5712;AC=3;AF=0.375;AN=8;AO=7;CIGAR=9M1X3M;DP=128;DPB=128.923;DPRA=0;EPP=18.2106;EPPR=235.358;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=276;QR=4202;RO=107;RPL=0;RPP=18.2106;RPPR=235.358;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=107;SRP=235.358;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:59:51,6,0:51:2000:6,0:233,0:-3.91193,0,-162.824,-19.2645,-164.63,-183.776 0|0:29:28,0,1:28:1097:0,1:0,40:0,-8.42884,-98.6274,-4.73419,-95.332,-95.031 0|1:12:6,0,5:6:239:0,5:0,196:-14.5531,-16.3593,-36.0681,0,-19.9366,-18.4315 0|1:28:22,5,1:22:866:5,1:176,40:-7.6638,0,-69.73,-10.9834,-67.9398,-81.9573 dDocent_Contig_10386 17 . A T 135.459 . AB=0.169492;ABP=58.9901;AC=3;AF=0.375;AN=8;AO=11;CIGAR=1X;DP=88;DPB=88;DPRA=0;EPP=26.8965;EPPR=170.214;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.987013;PAO=0;PQA=0;PQR=0;PRO=0;QA=425;QR=2929;RO=77;RPL=0;RPP=26.8965;RPPR=170.214;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=77;SRP=170.214;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:29:28,1:28:1068:1:36:0,-5.13159,-92.8282 0/1:24:21,3:21:791:3:116:-3.59282,0,-64.2859 0/1:20:18,2:18:686:2:79:-1.47703,0,-56.0509 0/1:15:10,5:10:384:5:194:-13.3171,0,-30.4003 dDocent_Contig_10387 7 . A C 144.252 . AB=0.181818;ABP=51.3749;AC=4;AF=0.5;AN=8;AO=10;CIGAR=1X;DP=55;DPB=55;DPRA=0;EPP=24.725;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=389;QR=1721;RO=45;RPL=0;RPP=24.725;RPPR=100.727;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:10,5:10:387:5:195:-13.4087,0,-30.6721 0/1:24:22,2:22:841:2:78:-0.178753,0,-68.7871 0/1:12:10,2:10:376:2:77:-3.69678,0,-30.5792 0/1:4:3,1:3:117:1:39:-2.69244,0,-9.70626 dDocent_Contig_10389 95 . C A 617.657 . AB=0.358025;ABP=17.1919;AC=3;AF=0.375;AN=8;AO=31;CIGAR=1X;DP=139;DPB=139;DPRA=0;EPP=70.3259;EPPR=237.529;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1076;QR=3692;RO=108;RPL=31;RPP=70.3259;RPPR=237.529;RPR=0;RUN=1;SAF=31;SAP=70.3259;SAR=0;SRF=108;SRP=237.529;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:58:56,2:56:1912:2:70:0,-10.8123,-165.711 0/1:50:36,14:36:1231:14:487:-29.1097,0,-96.0393 0/1:16:7,9:7:238:9:309:-23.327,0,-16.9363 0/1:15:9,6:9:311:6:210:-14.727,0,-23.8099 dDocent_Contig_10390 9 . T A 129.487 . AB=0.25;ABP=18.2106;AC=2;AF=0.25;AN=8;AO=9;CIGAR=1X;DP=101;DPB=101;DPRA=0.398551;EPP=22.5536;EPPR=202.786;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=325;QR=3518;RO=92;RPL=0;RPP=22.5536;RPPR=202.786;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=92;SRP=202.786;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:46:46,0:46:1744:0:0:0,-13.8474,-157.217 0/0:27:25,2:25:965:2:58:0,-2.62111,-81.6573 0/1:17:14,3:14:540:3:117:-5.79287,0,-43.8281 0/1:11:7,4:7:269:4:150:-10.5538,0,-21.2634 dDocent_Contig_10391 20 . T C 783.481 . AB=0.166667;ABP=55.1256;AC=0;AF=0;AN=8;AO=9;CIGAR=2X;DP=76;DPB=76;DPRA=0;EPP=22.5536;EPPR=83.3548;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=361;QR=1384;RO=37;RPL=0;RPP=22.5536;RPPR=83.3548;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:17:15,0,2:15:566:0,2:0,77:-2.19163,-6.70708,-53.0875,0,-46.7642,-46.1621 0|0:28:10,3,15:10:364:3,15:121,585:-45.0655,-38.0993,-66.915,0,-19.7158,-25.1836 0|0:26:11,6,9:11:418:6,9:240,350:-25.4437,-8.98055,-41.4502,0,-14.4908,-31.5586 0|0:5:1,0,4:1:36:0,4:0,156:-12.9108,-13.2118,-16.1433,0,-3.29724,-2.09312 dDocent_Contig_10392 67 . G C 1549.42 . AB=0.0601504;ABP=226.509;AC=0;AF=0;AN=8;AO=8;CIGAR=1M1D2M1X1M;DP=206;DPB=194.5;DPRA=1.10833;EPP=20.3821;EPPR=298.331;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=315;QR=5345;RO=136;RPL=8;RPP=20.3821;RPPR=298.331;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=136;SRP=298.331;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:83:51,5,27:51:1999:5,27:195,1044:-70.3833,-69.7074,-232.581,0,-148.349,-156.249 0|0:60:56,0,4:56:2200:0,4:0,163:0,-16.8577,-197.786,-3.00337,-184.338,-183.134 0|0:50:25,3,21:25:988:3,21:120,831:-60.9261,-58.5646,-138.972,0,-71.4808,-75.046 0|0:13:4,0,9:4:158:0,9:0,362:-29.0308,-30.2349,-43.2345,0,-13.3964,-10.6871 dDocent_Contig_10394 38 . C A 314.898 . AB=0.238095;ABP=40.5458;AC=3;AF=0.375;AN=8;AO=15;CIGAR=1X;DP=74;DPB=74;DPRA=1.90909;EPP=35.5824;EPPR=131.127;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=591;QR=2359;RO=59;RPL=0;RPP=35.5824;RPPR=131.127;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=59;SRP=131.127;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:11,0:11:433:0:0:0,-3.31133,-39.3203 0/1:40:28,12:28:1118:12:470:-30.6037,0,-88.8567 0/1:12:11,1:11:445:1:41:-0.482207,0,-36.7933 0/1:11:9,2:9:363:2:80:-4.28025,0,-29.7235 dDocent_Contig_10395 46 . G A 531.424 . AB=0.444444;ABP=4.21667;AC=2;AF=0.25;AN=8;AO=20;CIGAR=1X;DP=73;DPB=73;DPRA=1.60714;EPP=46.4397;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=771;QR=2129;RO=53;RPL=0;RPP=46.4397;RPPR=118.098;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:19:19,0:19:758:0:0:0,-5.71957,-68.5408 0/1:21:7,14:7:282:14:545:-43.0687,0,-19.431 0/1:24:18,6:18:728:6:226:-13.4717,0,-58.6205 0/0:9:9,0:9:361:0:0:0,-2.70927,-32.8525 dDocent_Contig_10396 73 . G T 1254.45 . AB=0.425;ABP=8.87328;AC=4;AF=0.5;AN=8;AO=51;CIGAR=2X2M1X2M1X;DP=120;DPB=120;DPRA=0;EPP=113.755;EPPR=152.842;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.980392;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1862;QR=2340;RO=69;RPL=51;RPP=113.755;RPPR=152.842;RPR=0;RUN=1;SAF=51;SAP=113.755;SAR=0;SRF=0;SRP=152.842;SRR=69;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:38:26,12:26:872:12:426:-27.2357,0,-67.349 0|1:65:34,31:34:1158:31:1138:-83.1616,0,-84.9564 0|1:14:7,7:7:243:7:261:-19.6333,0,-17.9945 0|1:3:2,1:2:67:1:37:-2.79474,0,-5.46005 dDocent_Contig_10397 18 . T G 1759.83 . AB=0.5;ABP=3.0103;AC=4;AF=0.5;AN=8;AO=61;CIGAR=1X;DP=122;DPB=122;DPRA=0;EPP=135.47;EPPR=135.47;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=0.95082;PAIREDR=0.95082;PAO=0;PQA=0;PQR=0;PRO=0;QA=2431;QR=2351;RO=61;RPL=0;RPP=135.47;RPPR=135.47;RPR=61;RUN=1;SAF=61;SAP=135.47;SAR=0;SRF=61;SRP=135.47;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:32:11,21:11:422:21:845:-66.7288,0,-28.7005 0/1:35:23,12:23:889:12:483:-33.2847,0,-69.7914 0/1:44:20,24:20:763:24:953:-72.8196,0,-55.7477 0/1:11:7,4:7:277:4:150:-10.5484,0,-21.9884 dDocent_Contig_10398 25 . G A 993.997 . AB=0.4;ABP=12.1305;AC=4;AF=0.5;AN=8;AO=42;CIGAR=1X;DP=105;DPB=105;DPRA=0;EPP=94.2121;EPPR=131.265;GTI=0;LEN=1;MEANALT=1;MQM=52.2381;MQMR=59.2381;NS=4;NUMALT=1;ODDS=0;PAIRED=0.809524;PAIREDR=0.984127;PAO=0;PQA=0;PQR=0;PRO=0;QA=1655;QR=2527;RO=63;RPL=0;RPP=94.2121;RPPR=139.813;RPR=42;RUN=1;SAF=42;SAP=94.2121;SAR=0;SRF=62;SRP=131.265;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:13,3:13:516:3:123:-4.36891,0,-41.9664 0/1:37:25,12:25:1005:12:467:-27.8542,0,-77.5267 0/1:28:17,11:17:679:11:430:-29.1335,0,-53.0051 0/1:24:8,16:8:327:16:635:-45.4406,0,-22.5754 dDocent_Contig_10399 15 . G A 214.182 . AB=0.363636;ABP=6.56362;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X3M1X1M1X;DP=54;DPB=54;DPRA=2.0625;EPP=20.3821;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.956522;PAO=0;PQA=0;PQR=0;PRO=0;QA=323;QR=1821;RO=46;RPL=0;RPP=20.3821;RPPR=102.898;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:22:14,8:14:559:8:323:-22.8161,0,-44.0326 0|0:7:7,0:7:276:0:0:0,-2.10721,-25.2094 0|0:10:10,0:10:392:0:0:0,-3.0103,-35.6364 0|0:15:15,0:15:594:0:0:0,-4.51545,-53.8014 dDocent_Contig_10400 15 . C A 695.378 . AB=0.176471;ABP=203.935;AC=4;AF=0.5;AN=8;AO=39;CIGAR=1X;DP=221;DPB=221;DPRA=0;EPP=87.6977;EPPR=398.218;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1578;QR=7267;RO=182;RPL=0;RPP=87.6977;RPPR=398.218;RPR=39;RUN=1;SAF=39;SAP=87.6977;SAR=0;SRF=182;SRP=398.218;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:91:76,15:76:3013:15:609:-27.7537,0,-243.858 0/1:86:77,9:77:3096:9:365:-7.32648,0,-252.82 0/1:34:21,13:21:832:13:523:-37.1799,0,-64.9548 0/1:10:8,2:8:326:2:81:-4.67543,0,-26.6994 dDocent_Contig_10401 107 . N C 290.828 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=11;CIGAR=1X;DP=11;DPB=11;DPRA=0;EPP=26.8965;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=305;QR=0;RO=0;RPL=0;RPP=26.8965;RPPR=0;RPR=11;RUN=1;SAF=0;SAP=26.8965;SAR=11;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:7:0,7:0:0:7:207:-18.9204,-2.10721,0 1/1:2:0,2:0:0:2:69:-6.55266,-0.60206,0 1/1:1:0,1:0:0:1:19:-1.89997,-0.30103,0 1/1:1:0,1:0:0:1:10:-0.999996,-0.30103,0 dDocent_Contig_10402 35 . C T 128.129 . AB=0.222222;ABP=21.1059;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=70;DPB=70;DPRA=1.88372;EPP=16.0391;EPPR=141.985;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=244;QR=2568;RO=64;RPL=0;RPP=16.0391;RPPR=141.985;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=64;SRP=141.985;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:21,6:21:839:6:244:-14.2108,0,-67.6967 0/0:17:17,0:17:685:0:0:0,-5.11751,-61.9789 0/0:22:22,0:22:883:0:0:0,-6.62266,-79.7785 0/0:4:4,0:4:161:0:0:0,-1.20412,-14.8749 dDocent_Contig_10403 97 . T C 42.9871 . AB=0.25;ABP=9.52472;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=116;DPB=116;DPRA=0.346154;EPP=9.52472;EPPR=248.387;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=103;QR=3845;RO=113;RPL=3;RPP=9.52472;RPPR=248.387;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=113;SRP=248.387;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:39:39,0:39:1300:0:0:0,-11.7402,-117.289 0/0:26:26,0:26:903:0:0:0,-7.82678,-81.5854 0/0:39:39,0:39:1375:0:0:0,-11.7402,-124.05 0/1:12:9,3:9:267:3:103:-5.99766,0,-20.7043 dDocent_Contig_10405 1 . N G 108.182 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=116;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:116:-10.8177,-0.90309,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_10406 28 . T G 75.0893 . AB=0.2;ABP=18.6449;AC=1;AF=0.125;AN=8;AO=6;CIGAR=2X2M1X1M1X4M1X;DP=105;DPB=105;DPRA=1.61111;EPP=16.0391;EPPR=202.786;GTI=0;LEN=1;MEANALT=2.66667;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=6.93889e-18;PAIRED=0;PAIREDR=0.923913;PAO=0;PQA=0;PQR=0;PRO=0;QA=236;QR=3577;RO=92;RPL=0;RPP=16.0391;RPPR=202.786;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=92;SRP=202.786;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:38:36,0,1,1:36:1396:0,1,1:0,40,40:0,-10.8371,-125.514,-7.542,-122.219,-121.918,-7.542,-122.219,-118.924,-121.918 0|0:29:26,0,2,1:26:1008:0,2,1:0,79,40:0,-7.82678,-90.6307,-1.32912,-84.1293,-83.5272,-4.53005,-87.3352,-80.8337,-87.0342 0|1:20:12,2,1,4:12:471:2,1,4:78,39,156:-9.20785,-6.40944,-44.5438,-9.61468,-41.9401,-48.0504,0,-32.324,-35.5294,-37.531 0|0:18:18,0,0,0:18:702:0,0,0:0,0,0:0,-5.41854,-63.5128,-5.41854,-63.5128,-63.5128,-5.41854,-63.5128,-63.5128,-63.5128 dDocent_Contig_10407 85 . A G 675.006 . AB=0.333333;ABP=24.0012;AC=4;AF=0.5;AN=8;AO=29;CIGAR=1X;DP=87;DPB=87;DPRA=0;EPP=65.983;EPPR=128.956;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1107;QR=2014;RO=58;RPL=29;RPP=65.983;RPPR=128.956;RPR=0;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:14,15:14:499:15:563:-42.2763,0,-36.5116 0/1:37:32,5:32:1121:5:195:-6.78609,0,-90.0533 0/1:13:8,5:8:258:5:195:-14.0108,0,-19.6196 0/1:8:4,4:4:136:4:154:-11.8254,0,-10.1675 dDocent_Contig_10408 8 . A G 1220.55 . AB=0.120879;ABP=116.619;AC=4;AF=0.5;AN=8;AO=11;CIGAR=1X2M;DP=96;DPB=96;DPRA=0;EPP=26.8965;EPPR=87.6977;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.794872;PAO=0;PQA=0;PQR=0;PRO=0;QA=420;QR=1496;RO=39;RPL=0;RPP=26.8965;RPPR=87.6977;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:36:12,22,2:12:458:22,2:841,78:-65.3895,0,-30.9462,-62.5895,-31.1559,-99.5632 0|1:22:12,7,3:12:458:7,3:260,117:-17.6515,0,-35.4619,-11.6407,-27.9498,-48.3197 0|1:33:12,15,6:12:463:15,6:542,225:-40.6076,0,-33.5153,-25.7872,-19.6055,-62.0155 0|1:5:3,2,0:3:117:2,0:77,0:-5.80399,0,-9.40523,-6.70708,-10.0073,-16.3277 dDocent_Contig_10409 84 . T C 246.935 . AB=0.454545;ABP=3.40511;AC=1;AF=0.125;AN=8;AO=10;CIGAR=1X;DP=44;DPB=44;DPRA=3;EPP=24.725;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=363;QR=1152;RO=33;RPL=10;RPP=24.725;RPPR=74.6689;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:13:12,0:12:418:0:0:0,-3.61236,-37.5828 0/1:22:12,10:12:418:10:363:-26.3922,0,-31.3294 0/0:7:7,0:7:249:0:0:0,-2.10721,-22.755 0/0:2:2,0:2:67:0:0:0,-0.60206,-6.36304 dDocent_Contig_10410 11 . G A 80.9001 . AB=0.125;ABP=90.9549;AC=2;AF=0.25;AN=8;AO=9;CIGAR=1X;DP=200;DPB=200;DPRA=0.5625;EPP=22.5536;EPPR=417.762;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.591623;PAO=0;PQA=0;PQR=0;PRO=0;QA=360;QR=7550;RO=191;RPL=0;RPP=22.5536;RPPR=417.762;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=191;SRP=417.762;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:35:31,4:31:1230:4:159:-4.15478,0,-100.437 0/1:37:32,5:32:1265:5:201:-7.33241,0,-102.983 0/0:65:65,0:65:2569:0:0:0,-19.5669,-231.353 0/0:63:63,0:63:2486:0:0:0,-18.9649,-223.893 dDocent_Contig_10411 29 . T A 2373.16 . AB=0.490909;ABP=3.12874;AC=4;AF=0.5;AN=8;AO=81;CIGAR=1X;DP=165;DPB=165;DPRA=0;EPP=178.9;EPPR=185.414;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3257;QR=3404;RO=84;RPL=0;RPP=178.9;RPPR=185.414;RPR=81;RUN=1;SAF=81;SAP=178.9;SAR=0;SRF=84;SRP=185.414;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:81:47,34:47:1907:34:1364:-98.631,0,-147.44 0/1:26:13,13:13:521:13:531:-40.3096,0,-39.4087 0/1:17:10,7:10:409:7:277:-20.1788,0,-32.0531 0/1:41:14,27:14:567:27:1085:-85.5945,0,-39.0296 dDocent_Contig_10412 46 . T C 46.7757 . AB=0.12;ABP=65.7224;AC=2;AF=0.25;AN=8;AO=6;CIGAR=1X;DP=121;DPB=121;DPRA=0.704225;EPP=16.0391;EPPR=250.558;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.991228;PAO=0;PQA=0;PQR=0;PRO=0;QA=245;QR=4501;RO=114;RPL=0;RPP=16.0391;RPPR=250.558;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=114;SRP=250.558;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:42:36,5:36:1416:5:204:-6.02574,0,-114.983 0/0:47:47,0:47:1840:0:0:0,-14.1484,-165.816 0/0:24:24,0:24:965:0:0:0,-7.22472,-87.1502 0/1:8:7,1:7:280:1:41:-1.68633,0,-23.1635 dDocent_Contig_10413 8 . A G 284.742 . AB=0.265306;ABP=26.4533;AC=2;AF=0.25;AN=8;AO=13;CIGAR=2X2M1X2M1X;DP=134;DPB=134;DPRA=0.576471;EPP=31.2394;EPPR=265.758;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.769231;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=509;QR=4702;RO=121;RPL=0;RPP=31.2394;RPPR=265.758;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=121;SRP=265.758;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:39:39,0:39:1527:0:0:0,-11.7402,-137.691 0|0:46:46,0:46:1794:0:0:0,-13.8474,-161.7 0|1:31:20,11:20:768:11:429:-29.6315,0,-60.1116 0|1:18:16,2:16:613:2:80:-2.17325,0,-50.0868 dDocent_Contig_10414 9 . T C 163.162 . AB=0.156627;ABP=88.0117;AC=3;AF=0.375;AN=8;AO=14;CIGAR=1X;DP=111;DPB=111;DPRA=0;EPP=33.4109;EPPR=213.643;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=0.958763;PAO=0;PQA=0;PQR=0;PRO=0;QA=535;QR=3692;RO=97;RPL=0;RPP=33.4109;RPPR=213.643;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=97;SRP=213.643;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:42:34,8:34:1301:8:311:-15.7111,0,-104.735 0/0:28:27,1:27:1040:1:29:0,-5.52918,-91.008 0/1:25:22,3:22:844:3:117:-3.38463,0,-68.7564 0/1:16:14,2:14:507:2:78:-2.58699,0,-41.1458 dDocent_Contig_10415 150 . A T 157.084 . AB=0.32;ABP=10.0459;AC=2;AF=0.25;AN=8;AO=8;CIGAR=1X;DP=58;DPB=58;DPRA=0.757576;EPP=20.3821;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=288;QR=1897;RO=50;RPL=0;RPP=20.3821;RPPR=111.584;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=111.584;SRR=50;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:17:17,0:17:653:0:0:0,-5.11751,-59.0999 0/0:16:16,0:16:588:0:0:0,-4.81648,-53.2355 0/1:12:7,5:7:274:5:167:-11.7396,0,-21.4125 0/1:13:10,3:10:382:3:121:-7.36681,0,-30.8182 dDocent_Contig_10416 29 . T C 116.394 . AB=0.357143;ABP=5.49198;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=73;DPB=73;DPRA=0.711864;EPP=13.8677;EPPR=150.67;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=191;QR=2700;RO=68;RPL=0;RPP=13.8677;RPPR=150.67;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=68;SRP=150.67;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:16:16,0:16:630:0:0:0,-4.81648,-57.029 0/0:22:22,0:22:864:0:0:0,-6.62266,-78.066 0/0:21:21,0:21:841:0:0:0,-6.32163,-76.0025 0/1:14:9,5:9:365:5:191:-13.3384,0,-29.0006 dDocent_Contig_10418 31 . T A 673.493 . AB=0.153846;ABP=314.199;AC=4;AF=0.5;AN=8;AO=46;CIGAR=1X;DP=299;DPB=299;DPRA=0;EPP=102.898;EPPR=552.393;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.652174;PAIREDR=0.920949;PAO=0;PQA=0;PQR=0;PRO=0;QA=1811;QR=10044;RO=253;RPL=0;RPP=102.898;RPPR=552.393;RPR=46;RUN=1;SAF=46;SAP=102.898;SAR=0;SRF=253;SRP=552.393;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:97:83,14:83:3290:14:550:-20.6399,0,-266.968 0/1:138:114,24:114:4541:24:944:-43.7204,0,-367.082 0/1:45:39,6:39:1523:6:239:-8.33757,0,-123.765 0/1:19:17,2:17:690:2:78:-1.68321,0,-56.7086 dDocent_Contig_10419 127 . A T 328.314 . AB=0.285714;ABP=28.1373;AC=2;AF=0.25;AN=8;AO=18;CIGAR=1X;DP=75;DPB=75;DPRA=5.25;EPP=42.0968;EPPR=126.784;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=606;QR=1826;RO=57;RPL=0;RPP=42.0968;RPPR=126.784;RPR=18;RUN=1;SAF=0;SAP=42.0968;SAR=18;SRF=0;SRP=126.784;SRR=57;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:10:10,0:10:312:0:0:0,-3.0103,-28.3832 0/1:43:33,10:33:1066:10:343:-18.2579,0,-83.2921 0/1:20:12,8:12:379:8:263:-17.9712,0,-28.3948 0/0:2:2,0:2:69:0:0:0,-0.60206,-6.55266 dDocent_Contig_10420 11 . C T 113.98 . AB=0.222222;ABP=21.1059;AC=2;AF=0.25;AN=8;AO=8;CIGAR=1X;DP=81;DPB=81;DPRA=0.566667;EPP=20.3821;EPPR=161.528;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=310;QR=2934;RO=73;RPL=0;RPP=20.3821;RPPR=161.528;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=73;SRP=161.528;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:24:22,2:22:881:2:65:0,-1.05252,-73.4262 0/0:30:30,0:30:1200:0:0:0,-9.0309,-108.272 0/1:19:17,2:17:692:2:82:-2.06011,0,-56.8878 0/1:8:4,4:4:161:4:163:-12.6502,0,-12.467 dDocent_Contig_10421 30 . C T 111.608 . AB=0.5;ABP=3.0103;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=45;DPB=45;DPRA=0.648649;EPP=11.6962;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=162;QR=1622;RO=41;RPL=0;RPP=11.6962;RPPR=92.0407;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:8:4,4:4:163:4:162:-12.5587,0,-12.6502 0/0:18:18,0:18:693:0:0:0,-5.41854,-62.6908 0/0:10:10,0:10:403:0:0:0,-3.0103,-36.6299 0/0:9:9,0:9:363:0:0:0,-2.70927,-33.0347 dDocent_Contig_10422 10 . T C 239.85 . AB=0.137255;ABP=61.2994;AC=0;AF=0;AN=8;AO=7;CIGAR=3X3M1X4M1D3M;DP=129;DPB=128.467;DPRA=1.96154;EPP=18.2106;EPPR=204.957;GTI=0;LEN=1;MEANALT=4;MQM=33;MQMR=60;NS=4;NUMALT=5;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=231;QR=3681;RO=93;RPL=0;RPP=18.2106;RPPR=204.957;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=93;SRP=204.957;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:33:31,0,0,1,0,0:31:1233:0,0,1,0,0:0,0,41,0,0:0,-9.33193,-111.075,-9.33193,-111.075,-111.075,-7.69742,-109.495,-109.495,-109.194,-9.33193,-111.075,-111.075,-109.495,-111.075,-9.33193,-111.075,-111.075,-109.495,-111.075,-111.075 0|0:51:28,0,7,3,0,11:28:1108:0,7,3,0,11:0,231,120,0,360:-17.682,-26.1108,-117.352,-9.32206,-100.573,-98.4655,-21.3714,-112.608,-95.8312,-111.705,-26.1108,-117.352,-100.573,-112.608,-117.352,0,-91.2566,-74.4835,-86.5169,-91.2566,-87.9453 0|0:26:16,2,0,0,2,6:16:629:2,0,0,2,6:48,0,0,58,199:-9.701,-11.3563,-62.559,-14.5175,-63.1611,-66.3272,-14.5175,-63.1611,-66.3272,-66.3272,-10.3641,-59.0134,-62.1779,-62.1779,-61.5759,0,-48.7015,-51.8622,-51.8622,-47.7168,-50.0561 0|0:19:18,0,0,0,0,0:18:711:0,0,0,0,0:0,0,0,0,0:0,-5.41854,-64.0708,-5.41854,-64.0708,-64.0708,-5.41854,-64.0708,-64.0708,-64.0708,-5.41854,-64.0708,-64.0708,-64.0708,-64.0708,-5.41854,-64.0708,-64.0708,-64.0708,-64.0708,-64.0708 dDocent_Contig_10423 62 . T C 489.327 . AB=0.304348;ABP=10.6577;AC=3;AF=0.375;AN=8;AO=7;CIGAR=1X9M;DP=62;DPB=62;DPRA=11.5;EPP=18.2106;EPPR=85.5263;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=275;QR=1476;RO=38;RPL=7;RPP=18.2106;RPPR=85.5263;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:23:12,4,7:12:466:4,7:157,275:-19.0045,-9.70444,-46.7862,0,-25.372,-36.1784 0|1:20:17,3,0:17:666:3,0:120,0:-5.1673,0,-54.2528,-10.2848,-55.1559,-65.0424 0|1:17:7,10,0:7:269:10,0:388,0:-30.1582,0,-19.4542,-32.2654,-22.4645,-54.3444 0|0:2:2,0,0:2:75:0,0:0,0:0,-0.60206,-7.11959,-0.60206,-7.11959,-7.11959 dDocent_Contig_10424 32 . A G 1267.94 . AB=0.342105;ABP=35.9253;AC=4;AF=0.5;AN=8;AO=52;CIGAR=1X;DP=152;DPB=152;DPRA=0;EPP=115.927;EPPR=220.158;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1985;QR=3983;RO=100;RPL=0;RPP=115.927;RPPR=220.158;RPR=52;RUN=1;SAF=52;SAP=115.927;SAR=0;SRF=100;SRP=220.158;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:50:37,13:37:1467:13:496:-29.9245,0,-117.221 0/1:68:38,30:38:1534:30:1167:-84.8278,0,-117.827 0/1:22:18,4:18:708:4:158:-7.97761,0,-57.4231 0/1:12:7,5:7:274:5:164:-11.4622,0,-21.4139 dDocent_Contig_10425 63 . A T 85.3745 . AB=0.155556;ABP=49.3833;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=113;DPB=113;DPRA=1.98529;EPP=18.2106;EPPR=233.186;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=257;QR=4033;RO=106;RPL=7;RPP=18.2106;RPPR=233.186;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=106;SRP=233.186;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:45:38,7:38:1450:7:257:-9.93539,0,-117.225 0/0:43:43,0:43:1627:0:0:0,-12.9443,-146.679 0/0:14:14,0:14:523:0:0:0,-4.21442,-47.4012 0/0:11:11,0:11:433:0:0:0,-3.31133,-39.3256 dDocent_Contig_10426 111 . C T 258.088 . AB=0.444444;ABP=3.73412;AC=1;AF=0.125;AN=8;AO=12;CIGAR=1X;DP=81;DPB=81;DPRA=1.5;EPP=29.068;EPPR=150.67;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=390;QR=2276;RO=68;RPL=0;RPP=29.068;RPPR=150.67;RPR=12;RUN=1;SAF=0;SAP=29.068;SAR=12;SRF=0;SRP=150.67;SRR=68;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:42:42,0:42:1434:0:0:0,-12.6433,-129.355 0/1:27:14,12:14:467:12:390:-27.5075,0,-34.4444 0/0:10:10,0:10:317:0:0:0,-3.0103,-28.8372 0/0:2:2,0:2:58:0:0:0,-0.60206,-5.50905 dDocent_Contig_10427 33 . C A 98.9122 . AB=0.4;ABP=3.87889;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X2M1X;DP=56;DPB=56;DPRA=0.652174;EPP=11.6962;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.980769;PAO=0;PQA=0;PQR=0;PRO=0;QA=158;QR=2043;RO=52;RPL=0;RPP=11.6962;RPPR=115.927;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:22:22,0:22:884:0:0:0,-6.62266,-79.8703 0|0:9:9,0:9:361:0:0:0,-2.70927,-32.8537 0|0:15:15,0:15:553:0:0:0,-4.51545,-50.0897 0|1:10:6,4:6:245:4:158:-11.5902,0,-19.4192 dDocent_Contig_10428 199 . G T 292.44 . AB=0.227273;ABP=31.4368;AC=5;AF=0.625;AN=8;AO=14;CIGAR=1X;DP=48;DPB=48;DPRA=0;EPP=33.4109;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.785714;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=516;QR=1310;RO=34;RPL=14;RPP=33.4109;RPPR=76.8404;RPR=0;RUN=1;SAF=0;SAP=33.4109;SAR=14;SRF=0;SRP=76.8404;SRR=34;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:4:0,4:0:0:4:155:-14.3254,-1.20412,0 0/1:20:16,4:16:615:4:152:-8.0286,0,-49.6676 0/1:16:12,4:12:462:4:132:-7.38676,0,-37.1145 0/1:8:6,2:6:233:2:77:-4.9009,0,-18.9318 dDocent_Contig_10429 20 . T C 1535.24 . AB=0.324468;ABP=53.3238;AC=4;AF=0.5;AN=8;AO=61;CIGAR=1M2I3M1X;DP=188;DPB=212.4;DPRA=0;EPP=135.47;EPPR=278.787;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2402;QR=5037;RO=127;RPL=0;RPP=135.47;RPPR=278.787;RPR=61;RUN=1;SAF=61;SAP=135.47;SAR=0;SRF=127;SRP=278.787;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:81:54,27:54:2129:27:1058:-71.133,0,-167.416 0|1:85:62,23:62:2463:23:916:-57.1613,0,-196.241 0|1:20:10,10:10:405:10:392:-29.6158,0,-30.79 0|1:2:1,1:1:40:1:36:-2.99621,0,-3.39362 dDocent_Contig_10431 41 . G A 3965.31 . AB=0.552301;ABP=8.68884;AC=4;AF=0.5;AN=8;AO=132;CIGAR=1X;DP=239;DPB=239;DPRA=0;EPP=289.645;EPPR=235.358;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.992424;PAIREDR=0.990654;PAO=0;PQA=0;PQR=0;PRO=0;QA=5276;QR=4283;RO=107;RPL=0;RPP=289.645;RPPR=235.358;RPR=132;RUN=1;SAF=132;SAP=289.645;SAR=0;SRF=107;SRP=235.358;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:101:48,53:48:1914:53:2127:-161.206,0,-142.06 0/1:87:34,53:34:1362:53:2114:-164.246,0,-96.6494 0/1:43:20,23:20:812:23:917:-69.8823,0,-60.4503 0/1:8:5,3:5:195:3:118:-8.59396,0,-15.5133 dDocent_Contig_10432 7 . A C 1342.17 . AB=0.480769;ABP=3.34437;AC=4;AF=0.5;AN=8;AO=50;CIGAR=1X;DP=104;DPB=104;DPRA=0;EPP=111.584;EPPR=120.27;GTI=0;LEN=1;MEANALT=1;MQM=59.36;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1909;QR=2074;RO=54;RPL=0;RPP=111.584;RPPR=120.27;RPR=50;RUN=1;SAF=50;SAP=111.584;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:41:18,23:18:693:23:889:-67.7623,0,-50.3617 0/1:43:22,21:22:843:21:801:-59.4695,0,-63.2482 0/1:14:10,4:10:385:4:155:-10.111,0,-30.7923 0/1:6:4,2:4:153:2:64:-4.27155,0,-12.3354 dDocent_Contig_10433 98 . N T 66.4848 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=70;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:70:-6.6474,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_10434 54 . C T 114.344 . AB=0.333333;ABP=7.35324;AC=2;AF=0.25;AN=8;AO=6;CIGAR=1X;DP=30;DPB=30;DPRA=1.5;EPP=16.0391;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=218;QR=933;RO=24;RPL=6;RPP=16.0391;RPPR=55.1256;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5,0:5:204:0:0:0,-1.50515,-18.744 0/1:11:6,5:6:235:5:178:-13.0566,0,-18.2106 0/1:7:6,1:6:229:1:40:-1.88847,0,-18.8677 0/0:7:7,0:7:265:0:0:0,-2.10721,-24.2097 dDocent_Contig_10437 34 . A T 1248.88 . AB=0.358779;ABP=25.703;AC=4;AF=0.5;AN=8;AO=47;CIGAR=1X1M;DP=131;DPB=131;DPRA=0;EPP=105.07;EPPR=170.214;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1878;QR=3066;RO=77;RPL=0;RPP=105.07;RPPR=170.214;RPR=47;RUN=1;SAF=47;SAP=105.07;SAR=0;SRF=77;SRP=170.214;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:25:9,4,12:9:364:4,12:158,488:-37.5518,-27.2627,-56.069,0,-17.0194,-26.4054 0|1:78:53,3,22:53:2110:3,22:123,877:-56.2518,-62.0528,-234.884,0,-163.57,-167.1 0|1:19:11,0,8:11:440:0,8:0,310:-22.5386,-25.8499,-62.1018,0,-36.6442,-34.2359 0|1:9:4,0,5:4:152:0,5:0,203:-15.9438,-17.1479,-29.6014,0,-12.8446,-11.3395 dDocent_Contig_10438 21 . A G 1068.44 . AB=0.306569;ABP=47.5334;AC=3;AF=0.375;AN=8;AO=42;CIGAR=1X;DP=170;DPB=170;DPRA=1.38384;EPP=94.2121;EPPR=280.959;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=0.992188;PAO=0;PQA=0;PQR=0;PRO=0;QA=1682;QR=5133;RO=128;RPL=0;RPP=94.2121;RPPR=280.959;RPR=42;RUN=1;SAF=42;SAP=94.2121;SAR=0;SRF=128;SRP=280.959;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:70:37,33:37:1479:33:1322:-98.1648,0,-112.287 0/1:58:50,8:50:2020:8:324:-12.0691,0,-164.523 0/0:33:33,0:33:1312:0:0:0,-9.93399,-118.347 0/1:9:8,1:8:322:1:36:-0.889005,0,-26.6385 dDocent_Contig_10439 64 . A G 67.9962 . AB=0.15625;ABP=35.8538;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=116;DPB=116;DPRA=1.14286;EPP=13.8677;EPPR=244.044;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.990991;PAO=0;PQA=0;PQR=0;PRO=0;QA=194;QR=4396;RO=111;RPL=5;RPP=13.8677;RPPR=244.044;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=111;SRP=244.044;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:32:27,5:27:1091:5:194:-8.19755,0,-88.8427 0/0:47:47,0:47:1856:0:0:0,-14.1484,-167.248 0/0:30:30,0:30:1170:0:0:0,-9.0309,-105.579 0/0:7:7,0:7:279:0:0:0,-2.10721,-25.4811 dDocent_Contig_10440 43 . C A 1255 . AB=0.318471;ABP=47.9473;AC=4;AF=0.5;AN=8;AO=50;CIGAR=1X;DP=157;DPB=157;DPRA=0;EPP=111.584;EPPR=233.186;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1986;QR=4241;RO=106;RPL=0;RPP=111.584;RPPR=233.186;RPR=50;RUN=1;SAF=50;SAP=111.584;SAR=0;SRF=106;SRP=233.186;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:53:41,12:41:1660:12:487:-28.2265,0,-133.666 0/1:61:31,30:31:1222:30:1192:-89.1945,0,-91.8796 0/1:26:22,4:22:886:4:148:-5.84901,0,-72.2189 0/1:17:12,4:12:473:4:159:-9.62785,0,-37.8722 dDocent_Contig_10441 107 . N C 41.8234 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=31;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0.333333;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=75;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:41:-2.085,-0.60206,0 1/1:1:0,1:0:0:1:34:-1.78939,-0.30103,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_10442 75 . C T 159.978 . AB=0.461538;ABP=3.17734;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=53;DPB=53;DPRA=2.3125;EPP=18.2106;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=277;QR=1781;RO=46;RPL=7;RPP=18.2106;RPPR=102.898;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:14:14,0:14:564:0:0:0,-4.21442,-51.1026 0/0:24:23,1:23:916:1:41:0,-3.13015,-78.6469 0/1:13:7,6:7:226:6:236:-17.6965,0,-16.7246 0/0:2:2,0:2:75:0:0:0,-0.60206,-7.11959 dDocent_Contig_10444 11 . A G 1232.64 . AB=0.452632;ABP=4.86177;AC=3;AF=0.375;AN=8;AO=43;CIGAR=1X;DP=129;DPB=129;DPRA=0.931373;EPP=96.3836;EPPR=189.757;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.988372;PAO=0;PQA=0;PQR=0;PRO=0;QA=1736;QR=3447;RO=86;RPL=0;RPP=96.3836;RPPR=189.757;RPR=43;RUN=1;SAF=43;SAP=96.3836;SAR=0;SRF=86;SRP=189.757;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:34:34,0:34:1339:0:0:0,-10.235,-120.763 0/1:32:25,7:25:1018:7:280:-15.9377,0,-82.2777 0/1:27:7,20:7:281:20:808:-64.908,0,-17.5338 0/1:36:20,16:20:809:16:648:-47.8164,0,-62.2885 dDocent_Contig_10445 27 . G A 1906.45 . AB=0.10219;ABP=191.326;AC=0;AF=0;AN=8;AO=14;CIGAR=3M1X2M;DP=343;DPB=401;DPRA=0;EPP=33.4109;EPPR=521.992;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.983264;PAO=0;PQA=0;PQR=0;PRO=0;QA=552;QR=9299;RO=239;RPL=0;RPP=33.4109;RPPR=521.992;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=239;SRP=521.992;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:69:19,39,11:19:749:39,11:1467,435:-114.439,0,-49.8802,-84.3565,-25.8218,-142.672 0|0:94:78,15,0:78:3031:15,0:570,0:-23.2308,0,-244.515,-46.7111,-249.03,-295.768 0|0:112:89,21,0:89:3441:21,0:801,0:-38.9503,0,-276.335,-65.742,-282.656,-348.364 0|0:68:53,12,3:53:2078:12,3:456,117:-21.4229,0,-167.276,-27.7583,-161.271,-197.751 dDocent_Contig_10446 13 . T C 1247.17 . AB=0.316456;ABP=49.2434;AC=4;AF=0.5;AN=8;AO=50;CIGAR=2X;DP=158;DPB=158;DPRA=0;EPP=111.584;EPPR=237.529;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1981;QR=4312;RO=108;RPL=0;RPP=111.584;RPPR=237.529;RPR=50;RUN=1;SAF=50;SAP=111.584;SAR=0;SRF=108;SRP=237.529;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:54:44,10:44:1781:10:388:-19.0129,0,-144.244 0|1:59:39,20:39:1542:20:784:-53.113,0,-121.261 0|1:43:24,19:24:949:19:769:-56.5862,0,-72.7682 0|1:2:1,1:1:40:1:40:-3.39362,0,-3.39362 dDocent_Contig_10447 32 . G A 1427.7 . AB=0.421488;ABP=9.48883;AC=4;AF=0.5;AN=8;AO=51;CIGAR=1X;DP=121;DPB=121;DPRA=0;EPP=113.755;EPPR=155.013;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2043;QR=2765;RO=70;RPL=0;RPP=113.755;RPPR=155.013;RPR=51;RUN=1;SAF=51;SAP=113.755;SAR=0;SRF=70;SRP=155.013;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:63:34,29:34:1333:29:1164:-86.0709,0,-101.264 0/1:23:9,14:9:364:14:558:-43.6381,0,-26.2005 0/1:23:21,2:21:825:2:80:-0.667885,0,-67.6322 0/1:12:6,6:6:243:6:241:-18.4539,0,-18.6352 dDocent_Contig_10448 9 . T G 116.447 . AB=0.357143;ABP=5.49198;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=72;DPB=72;DPRA=0.724138;EPP=13.8677;EPPR=148.499;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=191;QR=2598;RO=67;RPL=0;RPP=13.8677;RPPR=148.499;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=67;SRP=148.499;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:27:27,0:27:1041:0:0:0,-8.12781,-93.9958 0/0:25:25,0:25:974:0:0:0,-7.52575,-87.9726 0/1:14:9,5:9:349:5:191:-13.3437,0,-27.5563 0/0:6:6,0:6:234:0:0:0,-1.80618,-21.4311 dDocent_Contig_10449 156 . C T 37.5201 . AB=0.138889;ABP=43.7857;AC=4;AF=0.5;AN=8;AO=5;CIGAR=1X;DP=36;DPB=36;DPRA=0;EPP=13.8677;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=200;QR=1176;RO=31;RPL=0;RPP=13.8677;RPPR=70.3259;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=70.3259;SRR=31;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:7,2:7:267:2:80:-4.88252,0,-21.6777 0/1:10:9,1:9:312:1:39:-0.886264,0,-25.3896 0/1:11:10,1:10:402:1:41:-0.783237,0,-33.2287 0/1:6:5,1:5:195:1:40:-2.1895,0,-16.1159 dDocent_Contig_10451 23 . A C 276.004 . AB=0.217391;ABP=50.8771;AC=4;AF=0.5;AN=8;AO=15;CIGAR=1X3M1X;DP=69;DPB=69;DPRA=0;EPP=35.5824;EPPR=120.27;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=596;QR=2146;RO=54;RPL=0;RPP=35.5824;RPPR=120.27;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:18:14,4:14:562:4:163:-9.63989,0,-45.5045 0|1:31:25,6:25:991:6:238:-12.4618,0,-80.1576 0|1:13:9,4:9:355:4:160:-10.8706,0,-28.3989 0|1:7:6,1:6:238:1:35:-1.39142,0,-19.6864 dDocent_Contig_10452 17 . G T 112.411 . AB=0.149254;ABP=74.6041;AC=3;AF=0.375;AN=8;AO=13;CIGAR=1X;DP=103;DPB=103;DPRA=0;EPP=31.2394;EPPR=198.443;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.766667;PAO=0;PQA=0;PQR=0;PRO=0;QA=509;QR=3567;RO=90;RPL=0;RPP=31.2394;RPPR=198.443;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=90;SRP=198.443;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:40:36,4:36:1437:4:161:-2.83407,0,-117.535 0/0:36:33,3:33:1298:3:113:0,-0.299498,-106.537 0/1:14:12,2:12:476:2:74:-2.81101,0,-38.9733 0/1:13:9,4:9:356:4:161:-10.9619,0,-28.4871 dDocent_Contig_10453 107 . N G 84.9209 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=91;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:91:-8.49155,-0.90309,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_10454 37 . A G 382.691 . AB=0.4375;ABP=4.09604;AC=1;AF=0.125;AN=8;AO=14;CIGAR=1X;DP=125;DPB=125;DPRA=1.03226;EPP=33.4109;EPPR=244.044;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.972973;PAO=0;PQA=0;PQR=0;PRO=0;QA=544;QR=4350;RO=111;RPL=0;RPP=33.4109;RPPR=244.044;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=111;SRP=244.044;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:32:18,14:18:719:14:544:-39.667,0,-55.4037 0/0:27:27,0:27:1074:0:0:0,-8.12781,-96.9507 0/0:45:45,0:45:1748:0:0:0,-13.5463,-157.537 0/0:21:21,0:21:809:0:0:0,-6.32163,-73.1183 dDocent_Contig_10455 96 . T C 224.118 . AB=0.642857;ABP=5.49198;AC=1;AF=0.125;AN=8;AO=11;CIGAR=1X;DP=211;DPB=211;DPRA=0.343949;EPP=26.8965;EPPR=437.305;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=379;QR=6638;RO=200;RPL=11;RPP=26.8965;RPPR=437.305;RPR=0;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=200;SRP=437.305;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:94:94,0:94:3132:0:0:0,-28.2968,-282.127 0/0:63:63,0:63:2076:0:0:0,-18.9649,-187.112 0/0:40:38,2:38:1266:2:68:0,-5.58332,-107.779 0/1:14:5,9:5:164:9:311:-24.1108,0,-10.8688 dDocent_Contig_10456 15 . T A 276.028 . AB=0.0769231;ABP=83.8559;AC=2;AF=0.25;AN=8;AO=4;CIGAR=1M1X3M1X4M1X;DP=77;DPB=75.4545;DPRA=1.85714;EPP=11.6962;EPPR=122.441;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=159;QR=2140;RO=55;RPL=0;RPP=11.6962;RPPR=122.441;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:20:15,0,3,2:15:588:0,3,2:0,117,79:-5.09876,-9.61421,-57.9674,0,-48.3506,-47.4475,-3.11163,-51.4665,-41.8497,-50.8645 0|0:32:18,9,3,2:18:698:9,3,2:358,116,80:-23.4675,0,-54.6266,-19.3596,-47.8086,-75.793,-22.2944,-50.7446,-70.1051,-79.0305 0|0:14:14,0,0,0:14:544:0,0,0:0,0,0:0,-4.21442,-49.2992,-4.21442,-49.2992,-49.2992,-4.21442,-49.2992,-49.2992,-49.2992 0|1:11:8,0,2,0:8:310:0,2,0:0,81,0:-4.43393,-6.84217,-32.3552,0,-25.6683,-25.0662,-6.84217,-32.3552,-25.6683,-32.3552 dDocent_Contig_10457 21 . A G 76.0699 . AB=0.153846;ABP=43.6001;AC=2;AF=0.25;AN=8;AO=7;CIGAR=1X;DP=84;DPB=84;DPRA=0.833333;EPP=18.2106;EPPR=170.214;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=285;QR=3051;RO=77;RPL=0;RPP=18.2106;RPPR=170.214;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=77;SRP=170.214;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:24:24,0:24:948:0:0:0,-7.22472,-85.6185 0/1:21:18,3:18:724:3:122:-5.05086,0,-59.1634 0/0:21:20,1:20:791:1:41:0,-2.22706,-67.4105 0/1:18:15,3:15:588:3:122:-5.95395,0,-47.8398 dDocent_Contig_10458 107 . N C 83.6912 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=32;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=104;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:104:-8.36858,-0.90309,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_10460 88 . T C 31.9607 . AB=0.16;ABP=28.1125;AC=2;AF=0.25;AN=8;AO=6;CIGAR=1X;DP=60;DPB=60;DPRA=1.88889;EPP=16.0391;EPPR=120.27;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=212;QR=1871;RO=54;RPL=6;RPP=16.0391;RPPR=120.27;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:9:9,0:9:288:0:0:0,-2.70927,-26.2287 0/0:26:24,2:24:843:2:72:0,-0.990057,-69.352 0/1:9:8,1:8:281:1:36:-0.889005,0,-22.921 0/1:16:13,3:13:459:3:104:-4.88633,0,-36.8281 dDocent_Contig_10461 24 . C A 2688.25 . AB=0.0559441;ABP=492.852;AC=0;AF=0;AN=8;AO=16;CIGAR=1M1X3M1I2M1X2M1X1M1X1M1X;DP=286;DPB=299.733;DPRA=0;EPP=37.7539;EPPR=211.472;GTI=0;LEN=1;MEANALT=7;MQM=30.4375;MQMR=60;NS=4;NUMALT=5;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=637;QR=3744;RO=96;RPL=0;RPP=37.7539;RPPR=211.472;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=96;SRP=211.472;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:71:29,4,2,4,17,14:29:1128:4,2,4,17,14:162,80,162,686,556:-47.8288,-47.5586,-139.043,-49.968,-133.657,-142.059,-43.1987,-126.888,-129.302,-134.689,0,-83.695,-86.1073,-79.3382,-87.5806,-10.7837,-94.4754,-96.8881,-90.1191,-46.9226,-99.2643 0|0:77:12,3,3,30,3,23:12:473:3,3,30,3,23:120,119,1168,121,928:-129.961,-126.25,-164.261,-123.777,-155.368,-161.789,-37.5953,-69.1888,-66.7145,-67.4802,-123.599,-155.189,-152.717,-66.5361,-161.611,-57.068,-88.6617,-86.1883,0,-86.0099,-89.0615 0|0:91:41,4,0,8,8,24:41:1600:4,0,8,8,24:155,0,318,324,952:-66.0271,-68.6642,-198.975,-78.3693,-200.179,-209.887,-52.186,-173.997,-183.705,-181.297,-51.6494,-173.461,-183.169,-156.987,-180.761,0,-121.816,-131.523,-105.34,-104.804,-124.299 0|0:47:14,5,3,3,11,11:14:543:5,3,3,11,11:200,118,121,432,444:-32.3966,-24.4118,-67.5144,-26.9035,-59.313,-70.613,-26.6349,-59.0447,-61.5405,-70.3448,-1.08068,-33.4942,-35.9874,-35.7189,-42.3837,0,-32.4151,-34.9085,-34.64,-9.08459,-41.3051 dDocent_Contig_10462 11 . T G 213.233 . AB=0.243902;ABP=26.3669;AC=1;AF=0.125;AN=8;AO=10;CIGAR=1X;DP=166;DPB=166;DPRA=0.984;EPP=24.725;EPPR=341.76;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=389;QR=6041;RO=156;RPL=0;RPP=24.725;RPPR=341.76;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=156;SRP=341.76;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:73:73,0:73:2803:0:0:0,-21.9752,-252.397 0/0:34:34,0:34:1344:0:0:0,-10.235,-121.23 0/1:41:31,10:31:1199:10:389:-23.0223,0,-95.8516 0/0:18:18,0:18:695:0:0:0,-5.41854,-62.8772 dDocent_Contig_10463 39 . C T 201.688 . AB=0.264706;ABP=19.3602;AC=2;AF=0.25;AN=8;AO=9;CIGAR=1X;DP=84;DPB=84;DPRA=0.68;EPP=22.5536;EPPR=165.871;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=367;QR=3025;RO=75;RPL=0;RPP=22.5536;RPPR=165.871;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=75;SRP=165.871;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:10,4:10:409:4:162:-10.7523,0,-32.9562 0/0:27:27,0:27:1090:0:0:0,-8.12781,-98.386 0/1:20:15,5:15:597:5:205:-12.8144,0,-48.0467 0/0:23:23,0:23:929:0:0:0,-6.92369,-83.9109 dDocent_Contig_10464 98 . N T 120.819 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=119;QR=0;RO=0;RPL=4;RPP=11.6962;RPPR=0;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:1:0,1:0:0:1:26:-2.59983,-0.30103,0 1/1:1:0,1:0:0:1:34:-3.39891,-0.30103,0 1/1:2:0,2:0:0:2:59:-5.60384,-0.60206,0 dDocent_Contig_10465 9 . T C 72.599 . AB=0.1875;ABP=30.1537;AC=3;AF=0.375;AN=8;AO=6;CIGAR=1X;DP=44;DPB=44;DPRA=0.888889;EPP=16.0391;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=234;QR=1464;RO=38;RPL=0;RPP=16.0391;RPPR=85.5263;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:6:5,1:5:189:1:39:-2.09038,0,-15.5691 0/0:12:12,0:12:466:0:0:0,-3.61236,-42.2922 0/1:19:16,3:16:614:3:117:-5.19081,0,-49.8794 0/1:7:5,2:5:195:2:78:-5.29626,0,-15.817 dDocent_Contig_10466 84 . G A 251.981 . AB=0.254545;ABP=31.7922;AC=2;AF=0.25;AN=8;AO=15;CIGAR=1X;DP=73;DPB=73;DPRA=7.77778;EPP=35.5824;EPPR=128.956;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=531;QR=2043;RO=58;RPL=15;RPP=35.5824;RPPR=128.956;RPR=0;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:10,2:10:354:2:70:-3.03497,0,-28.5877 0/1:43:31,12:31:1100:12:424:-25.5509,0,-86.3665 0/0:15:14,1:14:483:1:37:0,-0.817621,-40.101 0/0:3:3,0:3:106:0:0:0,-0.90309,-9.8891 dDocent_Contig_10467 19 . C A 368.444 . AB=0.4;ABP=6.05036;AC=2;AF=0.25;AN=8;AO=14;CIGAR=1X;DP=125;DPB=125;DPRA=0.388889;EPP=33.4109;EPPR=244.044;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=556;QR=4433;RO=111;RPL=0;RPP=33.4109;RPPR=244.044;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=111;SRP=244.044;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:66:66,0:66:2637:0:0:0,-19.868,-237.453 0/0:24:24,0:24:952:0:0:0,-7.22472,-85.981 0/1:28:17,11:17:685:11:437:-31.2546,0,-53.5496 0/1:7:4,3:4:159:3:119:-8.9878,0,-12.5842 dDocent_Contig_10468 38 . G A 874.151 . AB=0.268116;ABP=67.4621;AC=1;AF=0.125;AN=8;AO=37;CIGAR=1X;DP=293;DPB=293;DPRA=2.67097;EPP=83.3548;EPPR=558.907;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1449;QR=9960;RO=256;RPL=0;RPP=83.3548;RPPR=558.907;RPR=37;RUN=1;SAF=37;SAP=83.3548;SAR=0;SRF=256;SRP=558.907;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:94:94,0:94:3685:0:0:0,-28.2968,-331.683 0/1:138:101,37:101:3949:37:1449:-89.1141,0,-313.89 0/0:27:27,0:27:1014:0:0:0,-8.12781,-91.5447 0/0:34:34,0:34:1312:0:0:0,-10.235,-118.346 dDocent_Contig_10470 34 . T A 39.9269 . AB=0.333333;ABP=4.45795;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=71;DPB=71;DPRA=2.03333;EPP=13.8677;EPPR=146.327;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=198;QR=2593;RO=66;RPL=0;RPP=13.8677;RPPR=146.327;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=66;SRP=146.327;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:16:15,1:15:602:1:40:0,-0.820801,-50.5226 0/0:10:10,0:10:386:0:0:0,-3.0103,-35.0902 0/0:39:37,2:37:1456:2:79:0,-4.24254,-123.792 0/1:6:4,2:4:149:2:79:-5.69145,0,-11.966 dDocent_Contig_10471 126 . T G 31.4691 . AB=0.230769;ABP=11.1951;AC=2;AF=0.25;AN=8;AO=5;CIGAR=1X;DP=53;DPB=53;DPRA=1.43333;EPP=13.8677;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.979167;PAO=0;PQA=0;PQR=0;PRO=0;QA=180;QR=1647;RO=48;RPL=0;RPP=13.8677;RPPR=107.241;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=107.241;SRR=48;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:30:28,2:28:941:2:72:0,-2.19418,-78.1579 0/1:10:8,2:8:279:2:72:-3.82642,0,-22.4378 0/0:10:10,0:10:355:0:0:0,-3.0103,-32.2908 0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363 dDocent_Contig_10472 36 . C T 117.712 . AB=0.428571;ABP=3.94093;AC=2;AF=0.25;AN=8;AO=11;CIGAR=1X;DP=61;DPB=61;DPRA=0;EPP=26.8965;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=285;QR=1770;RO=50;RPL=0;RPP=26.8965;RPPR=111.584;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:9,7:9:309:7:181:-11.7306,0,-23.3141 0/0:24:23,1:23:864:1:21:0,-5.12477,-75.9763 0/0:16:15,1:15:512:1:31:0,-1.71703,-43.2899 0/1:5:3,2:3:85:2:52:-3.43452,0,-6.42056 dDocent_Contig_10473 10 . G C 109.239 . AB=0.127907;ABP=106.433;AC=1;AF=0.125;AN=8;AO=28;CIGAR=1X;DP=317;DPB=317;DPRA=0;EPP=63.8115;EPPR=630.566;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=0.964286;PAIREDR=0.979239;PAO=0;PQA=0;PQR=0;PRO=0;QA=1077;QR=11383;RO=289;RPL=0;RPP=63.8115;RPPR=630.566;RPR=28;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=289;SRP=630.566;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:100:94,6:94:3689:6:233:0,-8.76792,-310.71 0/0:96:88,8:88:3490:8:310:0,-0.640663,-285.888 0/1:86:75,11:75:2913:11:424:-12.6221,0,-236.384 0/0:35:32,3:32:1291:3:110:0,-0.278808,-106.197 dDocent_Contig_10477 19 . G A 39.7356 . AB=0.25;ABP=7.35324;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X;DP=43;DPB=43;DPRA=0.685714;EPP=7.35324;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=1642;RO=41;RPL=0;RPP=7.35324;RPPR=92.0407;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:8:6,2:6:243:2:82:-5.37144,0,-19.8399 0/0:15:15,0:15:603:0:0:0,-4.51545,-54.6084 0/0:6:6,0:6:242:0:0:0,-1.80618,-22.1571 0/0:14:14,0:14:554:0:0:0,-4.21442,-50.2005 dDocent_Contig_10478 9 . T A 1071.36 . AB=0.411765;ABP=9.90792;AC=4;AF=0.5;AN=8;AO=42;CIGAR=1M1I2M2X;DP=102;DPB=110.4;DPRA=0;EPP=94.2121;EPPR=133.299;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.983333;PAO=0;PQA=0;PQR=0;PRO=0;QA=1598;QR=2281;RO=60;RPL=0;RPP=94.2121;RPPR=133.299;RPR=42;RUN=1;SAF=42;SAP=94.2121;SAR=0;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:46:31,15:31:1174:15:570:-37.7939,0,-92.1097 0|1:22:12,10:12:461:10:386:-28.4745,0,-35.2182 0|1:29:15,14:15:576:14:525:-38.8601,0,-43.4525 0|1:5:2,3:2:70:3:117:-9.40523,0,-5.14197 dDocent_Contig_10479 12 . A G 111.16 . AB=0.25;ABP=13.8677;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=60;DPB=60;DPRA=1.5;EPP=13.8677;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=205;QR=2158;RO=55;RPL=0;RPP=13.8677;RPPR=122.441;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:25:25,0:25:988:0:0:0,-7.52575,-89.2189 0/1:20:15,5:15:591:5:205:-12.8144,0,-47.5071 0/0:14:14,0:14:538:0:0:0,-4.21442,-48.7515 0/0:1:1,0:1:41:0:0:0,-0.30103,-4.09457 dDocent_Contig_10480 16 . A T 382.745 . AB=0.454545;ABP=3.60252;AC=3;AF=0.375;AN=8;AO=15;CIGAR=1M1I1X;DP=97;DPB=104.5;DPRA=0.171875;EPP=35.5824;EPPR=181.071;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=583;QR=3222;RO=82;RPL=0;RPP=35.5824;RPPR=181.071;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=82;SRP=181.071;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:64:64,0:64:2512:0:0:0,-19.2659,-226.241 0|1:14:8,6:8:317:6:238:-17.5786,0,-24.6823 0|1:15:9,6:9:354:6:226:-16.181,0,-27.7043 0|1:4:1,3:1:39:3:119:-9.89127,0,-2.69244 dDocent_Contig_10481 15 . G A 173.805 . AB=0.25;ABP=20.3821;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=124;DPB=124;DPRA=1.04348;EPP=20.3821;EPPR=254.901;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.801724;PAO=0;PQA=0;PQR=0;PRO=0;QA=315;QR=4627;RO=116;RPL=0;RPP=20.3821;RPPR=254.901;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=116;SRP=254.901;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:12:12,0:12:476:0:0:0,-3.61236,-43.1899 0/0:46:46,0:46:1835:0:0:0,-13.8474,-165.364 0/0:34:34,0:34:1360:0:0:0,-10.235,-122.659 0/1:32:24,8:24:956:8:315:-19.0795,0,-76.7104 dDocent_Contig_10482 1 . N G 74.9872 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=79;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:79:-7.49763,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_10483 38 . A G 576.444 . AB=0.348485;ABP=16.1707;AC=3;AF=0.375;AN=8;AO=23;CIGAR=1X;DP=79;DPB=79;DPRA=1.69231;EPP=52.9542;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.782609;PAIREDR=0.821429;PAO=0;PQA=0;PQR=0;PRO=0;QA=909;QR=2228;RO=56;RPL=0;RPP=52.9542;RPPR=124.613;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:13:13,0:13:517:0:0:0,-3.91339,-46.8747 0/1:27:17,10:17:687:10:387:-27.0561,0,-54.0319 0/1:20:14,6:14:548:6:237:-15.6814,0,-43.6414 0/1:19:12,7:12:476:7:285:-20.3048,0,-37.4706 dDocent_Contig_10484 209 . N G 76.8682 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:81:-7.68573,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_10487 17 . A G 1094.73 . AB=0.316176;ABP=42.9271;AC=2;AF=0.25;AN=8;AO=46;CIGAR=1X;DP=241;DPB=241;DPRA=2.88;EPP=102.898;EPPR=426.447;GTI=0;LEN=1;MEANALT=1;MQM=52.6087;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1829;QR=7747;RO=195;RPL=0;RPP=102.898;RPPR=426.447;RPR=46;RUN=1;SAF=46;SAP=102.898;SAR=0;SRF=195;SRP=426.447;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:74:51,23:51:1997:23:915:-59.8157,0,-157.64 0/1:62:42,20:42:1685:20:798:-53.0552,0,-133.209 0/0:80:77,3:77:3051:3:116:0,-13.336,-263.93 0/0:25:25,0:25:1014:0:0:0,-7.52575,-91.5509 dDocent_Contig_10488 108 . A G 247.227 . AB=0.246154;ABP=39.3908;AC=3;AF=0.375;AN=8;AO=16;CIGAR=1X;DP=90;DPB=90;DPRA=0.866667;EPP=37.7539;EPPR=163.699;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=541;QR=2427;RO=74;RPL=0;RPP=37.7539;RPPR=163.699;RPR=16;RUN=1;SAF=0;SAP=37.7539;SAR=16;SRF=0;SRP=163.699;SRR=74;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:13,3:13:424:3:100:-4.51418,0,-33.658 0/1:21:16,5:16:513:5:171:-9.40505,0,-40.1564 0/1:28:20,8:20:664:8:270:-16.2011,0,-51.6441 0/0:25:25,0:25:826:0:0:0,-7.52575,-74.6491 dDocent_Contig_10489 107 . N A 345.913 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=11;CIGAR=1X;DP=11;DPB=11;DPRA=0;EPP=26.8965;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=368;QR=0;RO=0;RPL=0;RPP=26.8965;RPPR=0;RPR=11;RUN=1;SAF=0;SAP=26.8965;SAR=11;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:64:-6.07869,-0.60206,0 1/1:2:0,2:0:0:2:70:-6.6474,-0.60206,0 1/1:7:0,7:0:0:7:234:-21.3873,-2.10721,0 ./.:.:.:.:.:.:.:. dDocent_Contig_10490 56 . A C 90.3766 . AB=0.285714;ABP=8.59409;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=45;DPB=45;DPRA=1.35484;EPP=11.6962;EPPR=89.8692;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=163;QR=1576;RO=40;RPL=4;RPP=11.6962;RPPR=89.8692;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:20:20,0:20:803:0:0:0,-6.0206,-72.5882 0/1:14:9,4:9:335:4:163:-10.7361,0,-26.1779 0/0:10:10,0:10:397:0:0:0,-3.0103,-36.0883 0/0:1:1,0:1:41:0:0:0,-0.30103,-4.09457 dDocent_Contig_10491 17 . T C 138.656 . AB=0.242424;ABP=22.0271;AC=2;AF=0.25;AN=8;AO=8;CIGAR=1X;DP=60;DPB=60;DPRA=1.22222;EPP=3.0103;EPPR=83.8559;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=0;PAIREDR=0.846154;PAO=0;PQA=0;PQR=0;PRO=0;QA=294;QR=1993;RO=52;RPL=0;RPP=20.3821;RPPR=115.927;RPR=8;RUN=1;SAF=4;SAP=3.0103;SAR=4;SRF=48;SRP=83.8559;SRR=4;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:12,2:12:455:2:77:-3.09472,0,-37.0824 0/1:19:13,6:13:494:6:217:-14.1602,0,-39.0847 0/0:19:19,0:19:731:0:0:0,-5.71957,-66.1141 0/0:8:8,0:8:313:0:0:0,-2.40824,-28.534 dDocent_Contig_10492 15 . T A 507.376 . AB=0.273684;ABP=45.274;AC=4;AF=0.5;AN=8;AO=26;CIGAR=1X;DP=95;DPB=95;DPRA=0;EPP=59.4686;EPPR=152.842;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.985507;PAO=0;PQA=0;PQR=0;PRO=0;QA=948;QR=2734;RO=69;RPL=0;RPP=59.4686;RPPR=152.842;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=69;SRP=152.842;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:6,11:6:239:11:403:-31.4986,0,-16.7662 0/1:27:22,5:22:883:5:183:-8.69894,0,-71.6478 0/1:32:25,7:25:983:7:251:-13.3034,0,-79.1326 0/1:19:16,3:16:629:3:111:-4.63435,0,-51.2221 dDocent_Contig_10493 31 . C G 296.244 . AB=0.212121;ABP=50.5195;AC=1;AF=0.125;AN=8;AO=14;CIGAR=1X;DP=162;DPB=162;DPRA=2.0625;EPP=33.4109;EPPR=324.388;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.972973;PAO=0;PQA=0;PQR=0;PRO=0;QA=565;QR=5845;RO=148;RPL=0;RPP=33.4109;RPPR=324.388;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=148;SRP=324.388;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:21:21,0:21:824:0:0:0,-6.32163,-74.4697 0/0:48:48,0:48:1917:0:0:0,-14.4494,-172.732 0/1:66:52,14:52:2052:14:565:-31.3234,0,-165.002 0/0:27:27,0:27:1052:0:0:0,-8.12781,-94.9673 dDocent_Contig_10494 42 . T G 3056.16 . AB=0.617647;ABP=19.3602;AC=5;AF=0.625;AN=8;AO=101;CIGAR=1X;DP=153;DPB=153;DPRA=0;EPP=222.329;EPPR=113.755;GTI=0;LEN=1;MEANALT=1.25;MQM=59.198;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.980198;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3939;QR=2026;RO=51;RPL=0;RPP=222.329;RPPR=113.755;RPR=101;RUN=1;SAF=101;SAP=222.329;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:33:17,16:17:664:16:644:-48.3608,0,-50.1521 0/1:50:23,26:23:919:26:1005:-74.5727,0,-68.1264 0/1:53:11,42:11:443:42:1623:-130.347,0,-24.2711 1/1:17:0,17:0:0:17:667:-57.7331,-5.11751,0 dDocent_Contig_10495 98 . N A 39.9009 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=2X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=42;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. 1|1:2:0,2:0:0:2:42:-3.98896,-0.60206,0 .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. dDocent_Contig_10497 13 . T A 930.845 . AB=0.0540541;ABP=66.922;AC=0;AF=0;AN=8;AO=2;CIGAR=1M1X8M;DP=189;DPB=181.9;DPRA=0;EPP=7.35324;EPPR=137.642;GTI=0;LEN=1;MEANALT=7;MQM=60;MQMR=60;NS=4;NUMALT=9;ODDS=0;PAIRED=1;PAIREDR=0.870968;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=2418;RO=62;RPL=0;RPP=7.35324;RPPR=137.642;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:60:24,2,9,0,0,0,1,3,0,1:24:943:2,9,0,0,0,1,3,0,1:81,344,0,0,0,40,120,0,41:-19.2378,-19.7736,-96.7993,0,-70.9674,-74.942,-26.4625,-97.4014,-77.6513,-104.084,-26.4625,-97.4014,-77.6513,-104.084,-104.084,-26.4625,-97.4014,-77.6513,-104.084,-104.084,-104.084,-23.4307,-94.3721,-74.6216,-101.055,-101.055,-101.055,-100.754,-16.8781,-87.8255,-68.0742,-94.5086,-94.5086,-94.5086,-91.4792,-93.6055,-26.4625,-97.4014,-77.6513,-104.084,-104.084,-104.084,-101.055,-94.5086,-104.084,-23.0736,-94.0153,-74.2648,-100.698,-100.698,-100.698,-97.6689,-91.1225,-100.698,-100.397 0|0:57:23,3,5,0,2,0,14,0,0,2:23:898:3,5,0,2,0,14,0,0,2:122,195,0,80,0,541,0,0,82:-34.0949,-30.9494,-103.885,-26.1127,-89.8856,-98.4463,-41.0186,-104.788,-99.9515,-114.854,-34.6365,-98.408,-93.5711,-108.474,-107.872,-41.0186,-104.788,-99.9515,-114.854,-108.474,-114.854,0,-63.7805,-58.9444,-73.8468,-67.4663,-73.8468,-69.6324,-41.0186,-104.788,-99.9515,-114.854,-108.474,-114.854,-73.8468,-114.854,-41.0186,-104.788,-99.9515,-114.854,-108.474,-114.854,-73.8468,-114.854,-114.854,-34.2464,-98.0184,-93.1815,-108.084,-101.704,-108.084,-67.0765,-108.084,-108.084,-107.482 0|0:37:5,0,0,0,4,2,8,0,2,7:5:186:0,0,0,4,2,8,0,2,7:0,0,0,162,80,305,0,82,283:-29.5517,-31.0568,-46.2865,-31.0568,-46.2865,-46.2865,-31.0568,-46.2865,-46.2865,-46.2865,-18.1463,-33.3787,-33.3787,-33.3787,-32.1746,-24.9969,-40.2275,-40.2275,-40.2275,-27.3188,-39.6255,-8.12665,-23.3608,-23.3608,-23.3608,-10.4488,-17.3003,-20.9525,-31.0568,-46.2865,-46.2865,-46.2865,-33.3787,-40.2275,-23.3608,-46.2865,-24.2822,-39.5132,-39.5132,-39.5132,-26.6042,-33.4538,-16.5854,-39.5132,-38.9112,-7.69975,-22.9355,-22.9355,-22.9355,-10.0224,-16.8745,0,-22.9355,-16.1596,-20.8283 0|0:35:10,0,7,3,2,0,4,0,0,5:10:391:0,7,3,2,0,4,0,0,5:0,268,120,80,0,153,0,0,205:-17.598,-20.6083,-52.7715,0,-32.1726,-30.0654,-11.5182,-43.685,-23.0849,-42.7819,-14.2236,-46.3895,-25.7895,-37.3026,-45.7875,-20.6083,-52.7715,-32.1726,-43.685,-46.3895,-52.7715,-9.12101,-41.2882,-20.6883,-32.2012,-34.9058,-41.2882,-40.0841,-20.6083,-52.7715,-32.1726,-43.685,-46.3895,-52.7715,-41.2882,-52.7715,-20.6083,-52.7715,-32.1726,-43.685,-46.3895,-52.7715,-41.2882,-52.7715,-52.7715,-3.66711,-35.8403,-15.2372,-26.7521,-29.4571,-35.8403,-24.3551,-35.8403,-35.8403,-34.3352 dDocent_Contig_10498 11 . A T 837.213 . AB=0.43662;ABP=5.48761;AC=2;AF=0.25;AN=8;AO=31;CIGAR=1X;DP=99;DPB=99;DPRA=2.53571;EPP=70.3259;EPPR=150.67;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1198;QR=2720;RO=68;RPL=0;RPP=70.3259;RPPR=150.67;RPR=31;RUN=1;SAF=31;SAP=70.3259;SAR=0;SRF=68;SRP=150.67;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:9:9,0:9:367:0:0:0,-2.70927,-33.3953 0/1:53:25,28:25:1009:28:1082:-81.7207,0,-75.15 0/1:18:15,3:15:586:3:116:-5.39845,0,-47.6524 0/0:19:19,0:19:758:0:0:0,-5.71957,-68.5422 dDocent_Contig_10499 55 . G A 1054.43 . AB=0.181818;ABP=331.89;AC=3;AF=0.375;AN=8;AO=72;CIGAR=1X;DP=484;DPB=484;DPRA=0;EPP=159.356;EPPR=897.657;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2616;QR=14734;RO=412;RPL=72;RPP=159.356;RPPR=897.657;RPR=0;RUN=1;SAF=72;SAP=159.356;SAR=0;SRF=412;SRP=897.657;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:164:128,36:128:4577:36:1318:-69.5395,0,-362.668 0/1:147:123,24:123:4363:24:864:-33.8183,0,-348.533 0/0:110:106,4:106:3870:4:144:0,-19.8005,-335.128 0/1:63:55,8:55:1924:8:290:-7.48298,0,-154.446 dDocent_Contig_10500 118 . C T 133.382 . AB=0.258065;ABP=18.771;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X;DP=89;DPB=89;DPRA=1.54286;EPP=22.5536;EPPR=176.728;GTI=0;LEN=1;MEANALT=1;MQM=57.3333;MQMR=54.4625;NS=4;NUMALT=1;ODDS=0;PAIRED=0.111111;PAIREDR=0.475;PAO=0;PQA=0;PQR=0;PRO=0;QA=297;QR=2607;RO=80;RPL=0;RPP=22.5536;RPPR=176.728;RPR=9;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=176.728;SRR=80;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:23,8:23:767:8:264:-14.7362,0,-58.5301 0/0:23:22,1:22:664:1:33:0,-3.62455,-56.5875 0/0:24:24,0:24:802:0:0:0,-7.22472,-72.4857 0/0:11:11,0:11:374:0:0:0,-3.31133,-32.6151 dDocent_Contig_10501 26 . C A 168.151 . AB=0.225;ABP=29.2851;AC=2;AF=0.25;AN=8;AO=11;CIGAR=1X;DP=125;DPB=125;DPRA=0.763158;EPP=26.8965;EPPR=250.558;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.973684;PAO=0;PQA=0;PQR=0;PRO=0;QA=430;QR=4555;RO=114;RPL=0;RPP=26.8965;RPPR=250.558;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=114;SRP=250.558;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:38:38,0:38:1513:0:0:0,-11.4391,-136.402 0/1:18:15,3:15:601:3:122:-5.95395,0,-49.0049 0/0:47:45,2:45:1810:2:80:0,-6.55662,-155.512 0/1:22:16,6:16:631:6:228:-14.2591,0,-50.497 dDocent_Contig_10503 17 . C T 104.128 . AB=0.8;ABP=6.91895;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=49;DPB=49;DPRA=0.340909;EPP=11.6962;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=147;QR=1780;RO=45;RPL=0;RPP=11.6962;RPPR=100.727;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:16:16,0:16:634:0:0:0,-4.81648,-57.3904 0/0:16:16,0:16:631:0:0:0,-4.81648,-57.1194 0/0:12:12,0:12:474:0:0:0,-3.61236,-43.0053 0/1:5:1,4:1:41:4:147:-12.0847,0,-2.58942 dDocent_Contig_10504 18 . G T 704.597 . AB=0.433333;ABP=5.32654;AC=4;AF=0.5;AN=8;AO=26;CIGAR=1X3M;DP=60;DPB=60;DPRA=0;EPP=59.4686;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1047;QR=1273;RO=32;RPL=0;RPP=59.4686;RPPR=72.4974;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:14:9,0,5:9:360:0,5:0,198:-13.9827,-16.6919,-46.3491,0,-30.0541,-28.549 0|1:24:13,0,11:13:517:0,11:0,449:-33.5412,-37.4545,-80.0141,0,-42.9624,-39.6511 0|1:11:5,0,6:5:195:0,6:0,239:-18.5719,-20.077,-36.1014,0,-16.4178,-14.6116 0|1:11:5,2,4:5:201:2,4:81,161:-11.7619,-6.5871,-22.5486,0,-9.88169,-15.3576 dDocent_Contig_10505 98 . N G 127.607 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=7.37776;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=138;QR=0;RO=0;RPL=4;RPP=11.6962;RPPR=0;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:4:0,4:0:0:4:138:-12.7604,-1.20412,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_10506 14 . A C 87.8704 . AB=0.137255;ABP=61.2994;AC=2;AF=0.25;AN=8;AO=7;CIGAR=1X;DP=93;DPB=93;DPRA=1.21429;EPP=18.2106;EPPR=189.757;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=287;QR=3436;RO=86;RPL=0;RPP=18.2106;RPPR=189.757;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=86;SRP=189.757;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:41:41,0:41:1619:0:0:0,-12.3422,-145.934 0/1:40:34,6:34:1379:6:246:-10.4789,0,-112.321 0/1:11:10,1:10:400:1:41:-0.783237,0,-33.0454 0/0:1:1,0:1:38:0:0:0,-0.30103,-3.79727 dDocent_Contig_10508 163 . C G 870.607 . AB=0.520548;ABP=3.27802;AC=4;AF=0.5;AN=8;AO=38;CIGAR=1X;DP=73;DPB=73;DPRA=0;EPP=85.5263;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.947368;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1272;QR=1203;RO=35;RPL=38;RPP=85.5263;RPPR=79.0118;RPR=0;RUN=1;SAF=0;SAP=85.5263;SAR=38;SRF=0;SRP=79.0118;SRR=35;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:12,14:12:410:14:470:-34.7945,0,-29.4015 0/1:23:8,15:8:280:15:487:-37.2157,0,-18.6163 0/1:17:9,8:9:309:8:280:-20.4225,0,-23.0257 0/1:7:6,1:6:204:1:35:-1.39142,0,-16.5865 dDocent_Contig_10509 10 . C T 110.723 . AB=0.205882;ABP=28.557;AC=3;AF=0.375;AN=8;AO=7;CIGAR=1X;DP=64;DPB=64;DPRA=0.377778;EPP=18.2106;EPPR=126.784;GTI=0;LEN=1;MEANALT=1;MQM=57;MQMR=58.8246;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.77193;PAO=0;PQA=0;PQR=0;PRO=0;QA=274;QR=2267;RO=57;RPL=0;RPP=18.2106;RPPR=126.784;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:12,3:12:482:3:122:-6.81759,0,-39.2043 0/0:30:30,0:30:1175:0:0:0,-9.0309,-105.467 0/1:9:6,3:6:245:3:111:-7.64027,0,-19.5954 0/1:10:9,1:9:365:1:41:-1.06313,0,-30.1964 dDocent_Contig_10510 10 . C T 420.653 . AB=0.130597;ABP=320.661;AC=1;AF=0.125;AN=8;AO=71;CIGAR=1X;DP=873;DPB=873;DPRA=0;EPP=157.185;EPPR=1742.36;GTI=0;LEN=1;MEANALT=1.25;MQM=58.9718;MQMR=60;NS=4;NUMALT=1;ODDS=2.77556e-17;PAIRED=1;PAIREDR=0.876404;PAO=0;PQA=0;PQR=0;PRO=0;QA=2784;QR=31784;RO=801;RPL=0;RPP=157.185;RPPR=1742.36;RPR=71;RUN=1;SAF=71;SAP=157.185;SAR=0;SRF=801;SRP=1742.36;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:263:253,10:253:10067:10:407:0,-42.1803,-868.414 0/1:268:232,35:232:9172:35:1381:-43.7641,0,-744.165 0/0:240:219,21:219:8681:21:795:0,-0.756969,-709.319 0/0:102:97,5:97:3864:5:201:0,-12.2345,-329.292 dDocent_Contig_10511 21 . A G 3162.11 . AB=0.0314136;ABP=367.283;AC=0;AF=0;AN=8;AO=6;CIGAR=1X3M1X;DP=276;DPB=276;DPRA=0;EPP=16.0391;EPPR=346.103;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=234;QR=6236;RO=158;RPL=0;RPP=16.0391;RPPR=346.103;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=158;SRP=346.103;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:85:56,0,29:56:2223:0,29:0,1165:-79.5363,-96.394,-279.383,0,-183.389,-174.659 0|0:84:29,1,54:29:1158:1,54:39,2162:-169.379,-174.903,-269.977,0,-92.1788,-79.1287 0|0:69:47,4,18:47:1845:4,18:159,723:-45.4297,-46.4878,-197.013,0,-138.64,-146.313 0|0:38:26,1,11:26:1010:1,11:36,449:-29.264,-34.1573,-116.829,0,-80.0775,-79.7026 dDocent_Contig_10512 108 . C T 207.878 . AB=0.45;ABP=3.44459;AC=1;AF=0.125;AN=8;AO=11;CIGAR=1X;DP=108;DPB=108;DPRA=0.386667;EPP=26.8965;EPPR=213.643;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=372;QR=3065;RO=97;RPL=0;RPP=26.8965;RPPR=213.643;RPR=11;RUN=1;SAF=0;SAP=26.8965;SAR=11;SRF=0;SRP=213.643;SRR=97;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:50:50,0:50:1565:0:0:0,-15.0515,-141.119 0/0:25:24,1:24:776:1:25:0,-5.02589,-67.6416 0/1:20:11,9:11:359:9:313:-22.4865,0,-26.6066 0/0:13:12,1:12:365:1:34:0,-0.514479,-29.7459 dDocent_Contig_10513 10 . C T 267.961 . AB=0.265306;ABP=26.4533;AC=3;AF=0.375;AN=8;AO=13;CIGAR=1X2M1X;DP=73;DPB=73;DPRA=0.680556;EPP=31.2394;EPPR=133.299;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=0.769231;PAIREDR=0.666667;PAO=0;PQA=0;PQR=0;PRO=0;QA=509;QR=2358;RO=60;RPL=0;RPP=31.2394;RPPR=133.299;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:12:6,6:6:244:6:230:-17.4523,0,-18.7265 0|1:25:21,4:21:803:4:159:-7.1662,0,-65.0554 0|1:12:9,3:9:354:3:120:-7.57554,0,-28.6075 0|0:24:24,0:24:957:0:0:0,-7.22472,-86.4364 dDocent_Contig_10514 76 . A G 364.963 . AB=0.369565;ABP=9.80795;AC=3;AF=0.375;AN=8;AO=18;CIGAR=1X;DP=63;DPB=63;DPRA=0;EPP=42.0968;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.955556;PAO=0;PQA=0;PQR=0;PRO=0;QA=612;QR=1609;RO=45;RPL=18;RPP=42.0968;RPPR=100.727;RPR=0;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:20,2:20:719:2:72:-0.214063,0,-58.4159 0/1:19:6,13:6:213:13:445:-34.6555,0,-13.7968 0/0:17:16,1:16:569:1:24:0,-2.71762,-49.1424 0/1:5:3,2:3:108:2:71:-5.23691,0,-8.57002 dDocent_Contig_10516 12 . G A 2072.85 . AB=0.62963;ABP=18.7736;AC=4;AF=0.5;AN=8;AO=68;CIGAR=1X;DP=108;DPB=108;DPRA=0;EPP=150.67;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2733;QR=1567;RO=39;RPL=0;RPP=150.67;RPPR=87.6977;RPR=68;RUN=1;SAF=68;SAP=150.67;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:9,18:9:356:18:726:-57.5349,0,-24.2728 0/1:37:7,30:7:280:30:1200:-97.1356,0,-14.4325 0/1:33:18,15:18:727:15:606:-44.9446,0,-55.8211 0/1:11:5,5:5:204:5:201:-15.0681,0,-15.3411 dDocent_Contig_10517 45 . C T 355.582 . AB=0.290323;ABP=14.8483;AC=5;AF=0.625;AN=8;AO=14;CIGAR=1X;DP=36;DPB=36;DPRA=0;EPP=33.4109;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=0.928571;PAIREDR=0.863636;PAO=0;PQA=0;PQR=0;PRO=0;QA=537;QR=857;RO=22;RPL=0;RPP=33.4109;RPPR=50.7827;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:8:7,1:7:275:1:40:-1.58744,0,-22.7103 0/1:11:6,5:6:236:5:186:-13.7884,0,-18.3008 0/1:12:9,3:9:346:3:116:-7.20518,0,-27.8808 1/1:5:0,5:0:0:5:195:-17.9224,-1.50515,0 dDocent_Contig_10518 28 . G C 39.5402 . AB=0.15;ABP=24.2907;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=47;DPB=47;DPRA=2.22222;EPP=9.52472;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=0;PAIREDR=0.659091;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=1735;RO=44;RPL=0;RPP=9.52472;RPPR=98.5551;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:17,3:17:670:3:122:-5.35189,0,-54.6112 0/0:11:11,0:11:430:0:0:0,-3.31133,-39.0445 0/0:6:6,0:6:241:0:0:0,-1.80618,-22.0667 0/0:10:10,0:10:394:0:0:0,-3.0103,-35.8172 dDocent_Contig_10519 150 . T C 560.488 . AB=0.521739;ABP=3.19912;AC=5;AF=0.625;AN=8;AO=25;CIGAR=1X;DP=47;DPB=47;DPRA=0;EPP=57.2971;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=58.52;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.96;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=809;QR=744;RO=22;RPL=0;RPP=57.2971;RPPR=50.7827;RPR=25;RUN=1;SAF=0;SAP=57.2971;SAR=25;SRF=0;SRP=50.7827;SRR=22;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:7,4:7:243:4:136:-9.26436,0,-18.8976 1/1:1:0,1:0:0:1:34:-3.39891,-0.30103,0 0/1:26:7,19:7:225:19:604:-46.7763,0,-12.7379 0/1:9:8,1:8:276:1:35:-0.789359,0,-22.4666 dDocent_Contig_10520 10 . C T 50.2262 . AB=0.112676;ABP=95.5273;AC=1;AF=0.125;AN=8;AO=11;CIGAR=1M11I3M1X;DP=189;DPB=215.4;DPRA=3.02128;EPP=26.8965;EPPR=385.189;GTI=0;LEN=1;MEANALT=2;MQM=50;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=426;QR=6732;RO=176;RPL=0;RPP=26.8965;RPPR=385.189;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=176;SRP=385.189;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:71:62,8:62:2370:8:308:-6.42056,0,-192.074 0|0:71:67,3:67:2565:3:118:0,-10.5653,-220.135 0|0:33:33,0:33:1269:0:0:0,-9.93399,-114.502 0|0:14:14,0:14:528:0:0:0,-4.21442,-47.86 dDocent_Contig_10523 38 . G A 64.5451 . AB=0.272727;ABP=7.94546;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=42;DPB=42;DPRA=1.06452;EPP=9.52472;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=123;QR=1543;RO=39;RPL=0;RPP=9.52472;RPPR=87.6977;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:14:14,0:14:542:0:0:0,-4.21442,-49.109 0/0:11:11,0:11:447:0:0:0,-3.31133,-40.5855 0/1:11:8,3:8:317:3:123:-8.15346,0,-25.5798 0/0:6:6,0:6:237:0:0:0,-1.80618,-21.7019 dDocent_Contig_10524 12 . G A 124.022 . 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AB=0.28;ABP=13.5202;AC=2;AF=0.25;AN=8;AO=7;CIGAR=1X;DP=42;DPB=42;DPRA=1.47059;EPP=18.2106;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=285;QR=1387;RO=35;RPL=0;RPP=18.2106;RPPR=79.0118;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:12,6:12:485:6:244:-16.9203,0,-38.5827 0/0:9:9,0:9:363:0:0:0,-2.70927,-33.0347 0/0:8:8,0:8:317:0:0:0,-2.40824,-28.8938 0/1:7:6,1:6:222:1:41:-1.98736,0,-18.2268 dDocent_Contig_10526 192 . G A 157.315 . 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AB=0.25;ABP=50.7827;AC=2;AF=0.25;AN=8;AO=27;CIGAR=1X;DP=181;DPB=181;DPRA=0;EPP=61.6401;EPPR=337.417;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.993506;PAO=0;PQA=0;PQR=0;PRO=0;QA=1031;QR=5856;RO=154;RPL=0;RPP=61.6401;RPPR=337.417;RPR=27;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=154;SRP=337.417;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:55:53,2:53:2015:2:78:0,-9.15318,-174.178 0/1:70:52,18:52:1966:18:686:-41.0005,0,-156.109 0/0:38:35,3:35:1336:3:117:0,-0.528759,-109.617 0/1:18:14,4:14:539:4:150:-8.44683,0,-43.4365 dDocent_Contig_10528 81 . A G 301.91 . 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AB=0.20339;ABP=48.096;AC=3;AF=0.375;AN=8;AO=12;CIGAR=1X;DP=76;DPB=76;DPRA=1.15686;EPP=29.068;EPPR=141.985;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=381;QR=2129;RO=64;RPL=0;RPP=29.068;RPPR=141.985;RPR=12;RUN=1;SAF=0;SAP=29.068;SAR=12;SRF=0;SRP=141.985;SRR=64;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:42:33,9:33:1120:9:276:-12.4951,0,-88.4602 0/1:7:5,2:5:164:2:70:-4.54019,0,-12.9764 0/0:17:17,0:17:535:0:0:0,-5.11751,-48.449 0/1:10:9,1:9:310:1:35:-0.488329,0,-25.224 dDocent_Contig_10530 38 . A G 145.059 . 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AB=0.4375;ABP=6.81038;AC=2;AF=0.25;AN=8;AO=49;CIGAR=1X;DP=161;DPB=161;DPRA=2.28571;EPP=109.412;EPPR=246.215;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1933;QR=4498;RO=112;RPL=0;RPP=109.412;RPPR=246.215;RPR=49;RUN=1;SAF=49;SAP=109.412;SAR=0;SRF=112;SRP=246.215;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:67:28,39:28:1108:39:1530:-117.767,0,-79.8353 0/1:45:35,10:35:1415:10:403:-23.0835,0,-114.054 0/0:30:30,0:30:1213:0:0:0,-9.0309,-109.441 0/0:19:19,0:19:762:0:0:0,-5.71957,-68.8948 dDocent_Contig_10533 18 . T C 1632.05 . AB=0.0666667;ABP=125.337;AC=0;AF=0;AN=8;AO=5;CIGAR=7M2X1M;DP=200;DPB=199.5;DPRA=0;EPP=13.8677;EPPR=176.728;GTI=0;LEN=1;MEANALT=6;MQM=60;MQMR=60;NS=4;NUMALT=6;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=202;QR=3188;RO=80;RPL=0;RPP=13.8677;RPPR=176.728;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=80;SRP=176.728;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:75:31,5,9,2,5,5,18:31:1231:5,9,2,5,5,18:200,359,81,202,198,732:-51.0497,-43.9071,-143.739,-30.8164,-115.678,-129.443,-53.7023,-138.564,-125.473,-154.437,-43.7282,-128.59,-115.499,-138.386,-143.56,-44.0858,-128.947,-115.856,-138.743,-128.769,-143.917,0,-84.8627,-71.7715,-94.6583,-84.6839,-85.0413,-95.9191 0|0:46:14,0,11,4,0,0,15:14:564:0,11,4,0,0,15:0,444,161,0,0,611:-46.1917,-50.4061,-96.8924,-13.8053,-60.2909,-56.9796,-37.1372,-83.6233,-47.0219,-82.4192,-50.4061,-96.8924,-60.2909,-83.6233,-96.8924,-50.4061,-96.8924,-60.2909,-83.6233,-96.8924,-96.8924,0,-46.4866,-9.88463,-33.2174,-46.4866,-46.4866,-41.9711 0|0:44:19,0,7,2,0,0,16:19:753:0,7,2,0,0,16:0,280,80,0,0,648:-47.7152,-53.4348,-115.411,-30.3712,-92.3458,-90.2386,-46.8449,-108.82,-85.7556,-108.218,-53.4348,-115.411,-92.3458,-108.82,-115.411,-53.4348,-115.411,-92.3458,-108.82,-115.411,-115.411,0,-61.9762,-38.9106,-55.3858,-61.9762,-61.9762,-57.1597 0|0:35:16,0,7,3,0,0,9:16:640:0,7,3,0,0,9:0,277,121,0,0,369:-25.6459,-30.4624,-83.1794,-7.67003,-60.3841,-58.2768,-20.4882,-73.2051,-50.4098,-72.302,-30.4624,-83.1794,-60.3841,-73.2051,-83.1794,-30.4624,-83.1794,-60.3841,-73.2051,-83.1794,-83.1794,0,-52.72,-29.9243,-42.7452,-52.72,-52.72,-50.0107 dDocent_Contig_10534 21 . C T 302.8 . AB=0.342857;ABP=10.5174;AC=2;AF=0.25;AN=8;AO=12;CIGAR=1X1M1X1M1X2M1X;DP=58;DPB=58;DPRA=1.52174;EPP=29.068;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.978261;PAO=0;PQA=0;PQR=0;PRO=0;QA=465;QR=1836;RO=46;RPL=0;RPP=29.068;RPPR=102.898;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:23:12,11:12:472:11:425:-31.6753,0,-35.9066 0|0:14:14,0:14:560:0:0:0,-4.21442,-50.7447 0|1:12:11,1:11:443:1:40:-0.383319,0,-36.6139 0|0:9:9,0:9:361:0:0:0,-2.70927,-32.8536 dDocent_Contig_10535 77 . A G 809.067 . AB=0.368421;ABP=8.7247;AC=5;AF=0.625;AN=8;AO=30;CIGAR=1X;DP=54;DPB=54;DPRA=0;EPP=68.1545;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1055;QR=857;RO=24;RPL=30;RPP=68.1545;RPPR=55.1256;RPR=0;RUN=1;SAF=30;SAP=68.1545;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:16:0,16:0:0:16:555:-50.2705,-4.81648,0 0/1:20:10,10:10:360:10:366:-27.2672,0,-26.7231 0/1:11:8,3:8:286:3:108:-6.7636,0,-22.7737 0/1:7:6,1:6:211:1:26:-0.492618,0,-17.2259 dDocent_Contig_10536 46 . G A 514.945 . AB=0.198529;ABP=110.37;AC=3;AF=0.375;AN=8;AO=27;CIGAR=1X;DP=149;DPB=149;DPRA=3.48718;EPP=38.4777;EPPR=267.93;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.3115;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.967213;PAO=0;PQA=0;PQR=0;PRO=0;QA=1075;QR=4748;RO=122;RPL=3;RPP=38.4777;RPPR=267.93;RPR=24;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=122;SRP=267.93;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:53:45,8:45:1749:8:314:-12.6679,0,-141.669 0/1:51:41,10:41:1607:10:398:-20.8237,0,-128.409 0/1:32:23,9:23:876:9:363:-23.4008,0,-69.518 0/0:13:13,0:13:516:0:0:0,-3.91339,-46.7875 dDocent_Contig_10537 10 . A G 186.975 . AB=0.183333;ABP=55.2704;AC=2;AF=0.25;AN=8;AO=12;CIGAR=1X;DP=119;DPB=119;DPRA=0.611111;EPP=29.068;EPPR=235.358;GTI=0;LEN=1;MEANALT=1;MQM=54.1667;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.583333;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=486;QR=4223;RO=107;RPL=0;RPP=29.068;RPPR=235.358;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=107;SRP=235.358;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:41:37,4:37:1466:4:160:-0.00788247,0,-119.85 0/0:42:42,0:42:1649:0:0:0,-12.6433,-148.644 0/0:17:16,1:16:626:1:40:0,-1.12183,-52.6803 0/1:19:12,7:12:482:7:286:-20.3952,0,-38.0124 dDocent_Contig_10538 8 . A C 88.2079 . AB=0.148936;ABP=53.3238;AC=1;AF=0.125;AN=8;AO=13;CIGAR=2X;DP=164;DPB=164;DPRA=3.87179;EPP=31.2394;EPPR=328.731;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=504;QR=5711;RO=150;RPL=0;RPP=31.2394;RPPR=328.731;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=150;SRP=328.731;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:68:63,5:63:2381:5:194:0,-2.63719,-196.674 0|1:47:39,7:39:1491:7:271:-10.5198,0,-120.23 0|0:36:35,1:35:1345:1:39:0,-6.94052,-117.441 0|0:13:13,0:13:494:0:0:0,-3.91339,-44.8057 dDocent_Contig_10541 36 . A G 36.7258 . AB=0.25;ABP=7.35324;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X;DP=66;DPB=66;DPRA=0.413793;EPP=7.35324;EPPR=141.985;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=2546;RO=64;RPL=0;RPP=7.35324;RPPR=141.985;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=64;SRP=141.985;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:31:31,0:31:1245:0:0:0,-9.33193,-112.322 0/1:8:6,2:6:229:2:82:-5.37144,0,-18.5635 0/0:21:21,0:21:835:0:0:0,-6.32163,-75.4668 0/0:6:6,0:6:237:0:0:0,-1.80618,-21.7029 dDocent_Contig_10543 52 . T A 36.9115 . AB=0.285714;ABP=5.80219;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=105;DPB=105;DPRA=1.1;EPP=9.52472;EPPR=224.5;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=120;QR=4067;RO=102;RPL=3;RPP=9.52472;RPPR=224.5;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=102;SRP=224.5;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:48:47,1:47:1857:1:41:0,-10.3549,-163.247 0/0:26:26,0:26:1052:0:0:0,-7.82678,-94.9702 0/0:24:24,0:24:964:0:0:0,-7.22472,-87.0591 0/1:7:5,2:5:194:2:79:-5.39003,0,-15.7233 dDocent_Contig_10544 94 . T A 129.405 . AB=0.222222;ABP=27.1378;AC=2;AF=0.25;AN=8;AO=8;CIGAR=1X;DP=78;DPB=78;DPRA=0.857143;EPP=20.3821;EPPR=155.013;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=294;QR=2483;RO=70;RPL=8;RPP=20.3821;RPPR=155.013;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=70;SRP=155.013;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:23:23,0:23:830:0:0:0,-6.92369,-75.0217 0/1:27:21,6:21:748:6:222:-12.2103,0,-59.5159 0/1:9:7,2:7:247:2:72:-4.12737,0,-19.8635 0/0:19:19,0:19:658:0:0:0,-5.71957,-59.536 dDocent_Contig_10545 114 . G A 69.5494 . AB=0.333333;ABP=5.9056;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=55;DPB=55;DPRA=1.11765;EPP=13.8677;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=169;QR=1718;RO=50;RPL=0;RPP=13.8677;RPPR=111.584;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=111.584;SRR=50;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:26:25,1:25:848:1:35:0,-4.32815,-73.1329 0/0:17:17,0:17:591:0:0:0,-5.11751,-53.5176 0/1:12:8,4:8:279:4:134:-8.77885,0,-21.8366 ./.:.:.:.:.:.:.:. dDocent_Contig_10546 25 . C T 242.758 . AB=0.294118;ABP=15.5282;AC=1;AF=0.125;AN=8;AO=10;CIGAR=1X;DP=74;DPB=74;DPRA=2.55;EPP=24.725;EPPR=141.985;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=395;QR=2518;RO=64;RPL=0;RPP=24.725;RPPR=141.985;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=64;SRP=141.985;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:34:24,10:24:935:10:395:-25.6737,0,-74.2154 0/0:17:17,0:17:668:0:0:0,-5.11751,-60.4527 0/0:16:16,0:16:636:0:0:0,-4.81648,-57.576 0/0:7:7,0:7:279:0:0:0,-2.10721,-25.4795 dDocent_Contig_10547 11 . T C 450.344 . AB=0.410256;ABP=5.73856;AC=1;AF=0.125;AN=8;AO=16;CIGAR=1X;DP=72;DPB=72;DPRA=3.54545;EPP=37.7539;EPPR=107.861;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.6429;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.875;PAO=0;PQA=0;PQR=0;PRO=0;QA=646;QR=2230;RO=56;RPL=0;RPP=37.7539;RPPR=124.613;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=54;SRP=107.861;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:13:13,0:13:526:0:0:0,-3.91339,-47.6876 0/1:39:23,16:23:915:16:646:-46.7334,0,-70.8793 0/0:13:13,0:13:517:0:0:0,-3.91339,-46.8771 0/0:7:7,0:7:272:0:0:0,-2.10721,-24.8431 dDocent_Contig_10549 8 . A T 595.406 . AB=0.369231;ABP=12.665;AC=2;AF=0.25;AN=8;AO=29;CIGAR=1X;DP=140;DPB=140;DPRA=0;EPP=65.983;EPPR=244.044;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1103;QR=4175;RO=111;RPL=0;RPP=65.983;RPPR=244.044;RPR=29;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=111;SRP=244.044;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:39:27,12:27:1020:12:452:-29.2869,0,-80.3683 0/1:26:14,12:14:521:12:457:-33.6515,0,-39.4037 0/0:47:44,3:44:1681:3:116:0,-3.3307,-140.732 0/0:28:26,2:26:953:2:78:0,-1.02537,-78.6678 dDocent_Contig_10550 72 . T A 65.1335 . AB=0.190476;ABP=20.4855;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=60;DPB=60;DPRA=1.61538;EPP=11.6962;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=154;QR=2114;RO=56;RPL=4;RPP=11.6962;RPPR=124.613;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:17,4:17:634:4:154:-7.91125,0,-51.0667 0/0:20:20,0:20:751:0:0:0,-6.0206,-67.9157 0/0:14:14,0:14:537:0:0:0,-4.21442,-48.6704 0/0:5:5,0:5:192:0:0:0,-1.50515,-17.6491 dDocent_Contig_10551 17 . G A 251.633 . AB=0.261905;ABP=23.691;AC=1;AF=0.125;AN=8;AO=12;CIGAR=1X;DP=138;DPB=138;DPRA=0.682927;EPP=29.068;EPPR=276.616;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.833333;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=475;QR=4823;RO=126;RPL=0;RPP=29.068;RPPR=276.616;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=126;SRP=276.616;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:46:46,0:46:1778:0:0:0,-13.8474,-160.235 0/1:42:31,11:31:1186:11:435:-26.8616,0,-94.3671 0/0:36:36,0:36:1360:0:0:0,-10.8371,-122.651 0/0:14:13,1:13:499:1:40:0,-0.218741,-41.2532 dDocent_Contig_10556 88 . A C 81.3402 . AB=0.285714;ABP=8.59409;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=63;DPB=63;DPRA=0.857143;EPP=11.6962;EPPR=131.127;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.915254;PAO=0;PQA=0;PQR=0;PRO=0;QA=152;QR=2209;RO=59;RPL=2;RPP=3.0103;RPPR=3.0471;RPR=2;RUN=1;SAF=2;SAP=3.0103;SAR=2;SRF=29;SRP=3.0471;SRR=30;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:16:16,0:16:606:0:0:0,-4.81648,-54.8707 0/1:14:10,4:10:376:4:152:-9.83299,0,-29.9714 0/0:18:18,0:18:667:0:0:0,-5.41854,-60.3532 0/0:15:15,0:15:560:0:0:0,-4.51545,-50.7317 dDocent_Contig_10557 32 . G T 42.5501 . AB=0.157895;ABP=22.325;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=54;DPB=54;DPRA=1.62857;EPP=9.52472;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=2050;RO=51;RPL=0;RPP=9.52472;RPPR=113.755;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:16,3:16:642:3:122:-5.65292,0,-52.3946 0/0:16:16,0:16:644:0:0:0,-4.81648,-58.2941 0/0:8:8,0:8:322:0:0:0,-2.40824,-29.3465 0/0:11:11,0:11:442:0:0:0,-3.31133,-40.1343 dDocent_Contig_10559 112 . G T 3356.01 . AB=0.504132;ABP=3.02825;AC=5;AF=0.625;AN=8;AO=125;CIGAR=1X;DP=185;DPB=185;DPRA=0;EPP=274.444;EPPR=133.299;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4180;QR=2042;RO=60;RPL=0;RPP=274.444;RPPR=133.299;RPR=125;RUN=1;SAF=0;SAP=274.444;SAR=125;SRF=0;SRP=133.299;SRR=60;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:64:0,64:0:0:64:2141:-192.958,-19.2659,0 0/1:47:19,28:19:653:28:921:-69.0445,0,-44.9435 0/1:26:22,4:22:752:4:140:-5.11815,0,-60.1708 0/1:48:19,29:19:637:29:978:-73.8778,0,-43.1954 dDocent_Contig_10560 27 . A G 100.093 . AB=0.4;ABP=3.87889;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=37;DPB=37;DPRA=1.11111;EPP=11.6962;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.787879;PAO=0;PQA=0;PQR=0;PRO=0;QA=156;QR=1273;RO=33;RPL=0;RPP=11.6962;RPPR=74.6689;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:6,4:6:239:4:156:-11.407,0,-18.8751 0/0:16:16,0:16:610:0:0:0,-4.81648,-55.2337 0/0:9:9,0:9:352:0:0:0,-2.70927,-32.0405 0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83637 dDocent_Contig_10561 11 . G A 2239.25 . AB=0.585106;ABP=14.8379;AC=4;AF=0.5;AN=8;AO=110;CIGAR=1X3M1X2M1X;DP=188;DPB=188;DPRA=0;EPP=241.872;EPPR=170.214;GTI=0;LEN=1;MEANALT=1.25;MQM=32.5727;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4374;QR=3023;RO=77;RPL=0;RPP=241.872;RPPR=170.214;RPR=110;RUN=1;SAF=110;SAP=241.872;SAR=0;SRF=77;SRP=170.214;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:51:29,21:29:1152:21:835:-43.9632,0,-88.8075 0|1:59:21,38:21:834:38:1507:-66.5139,0,-57.6189 0|1:59:24,35:24:922:35:1391:-79.089,0,-65.5298 0|1:19:3,16:3:115:16:641:-41.7564,0,-5.00516 dDocent_Contig_10563 39 . T G 41.0284 . AB=0.125;ABP=22.5536;AC=0;AF=0;AN=8;AO=2;CIGAR=1X3M1X;DP=44;DPB=44;DPRA=2.13333;EPP=7.35324;EPPR=83.3548;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0.945946;PAO=0;PQA=0;PQR=0;PRO=0;QA=79;QR=1437;RO=37;RPL=0;RPP=7.35324;RPPR=83.3548;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:8:8,0,0:8:311:0,0:0,0:0,-2.40824,-28.3526,-2.40824,-28.3526,-28.3526 0|0:13:12,0,1:12:465:0,1:0,40:-0.0822893,-3.69465,-41.8842,0,-38.5881,-38.2871 0|0:16:10,2,3:10:392:2,3:79,108:-5.79988,-2.29179,-33.9618,0,-25.7586,-31.3583 0|0:7:7,0,0:7:269:0,0:0,0:0,-2.10721,-24.5733,-2.10721,-24.5733,-24.5733 dDocent_Contig_10565 18 . A T 78.0278 . AB=0.192308;ABP=24.391;AC=2;AF=0.25;AN=8;AO=5;CIGAR=1X;DP=52;DPB=52;DPRA=1;EPP=13.8677;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.2;PAIREDR=0.978723;PAO=0;PQA=0;PQR=0;PRO=0;QA=202;QR=1905;RO=47;RPL=0;RPP=13.8677;RPPR=105.07;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:20:20,0:20:805:0:0:0,-6.0206,-72.7668 0/1:20:16,4:16:653:4:162:-8.94615,0,-53.0816 0/1:6:5,1:5:203:1:40:-2.1895,0,-16.8469 0/0:6:6,0:6:244:0:0:0,-1.80618,-22.3388 dDocent_Contig_10566 20 . C T 66.9547 . AB=0.172414;ABP=30.0414;AC=1;AF=0.125;AN=8;AO=10;CIGAR=1X;DP=102;DPB=102;DPRA=3.44444;EPP=24.725;EPPR=12.4515;GTI=0;LEN=1;MEANALT=1;MQM=34.5;MQMR=29.1087;NS=4;NUMALT=1;ODDS=0;PAIRED=0.1;PAIREDR=0.402174;PAO=0;PQA=0;PQR=0;PRO=0;QA=400;QR=3232;RO=92;RPL=0;RPP=24.725;RPPR=202.786;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=36;SRP=12.4515;SRR=56;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:24,5:24:864:5:200:-8.09341,0,-46.6257 0/0:27:25,2:25:895:2:79:0,-3.224,-49.6051 0/0:37:34,3:34:1133:3:121:0,-2.96868,-62.4773 0/0:9:9,0:9:340:0:0:0,-2.70927,-28.8862 dDocent_Contig_10568 16 . C A 1334.94 . AB=0.811321;ABP=47.6279;AC=1;AF=0.125;AN=8;AO=43;CIGAR=1X;DP=118;DPB=118;DPRA=2.44615;EPP=96.3836;EPPR=165.871;GTI=0;LEN=1;MEANALT=1;MQM=45;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1731;QR=3009;RO=75;RPL=0;RPP=96.3836;RPPR=165.871;RPR=43;RUN=1;SAF=43;SAP=96.3836;SAR=0;SRF=75;SRP=165.871;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:55:55,0:55:2194:0:0:0,-16.5566,-197.624 0/1:53:10,43:10:409:43:1731:-135.192,0,-21.216 0/0:9:9,0:9:365:0:0:0,-2.70927,-33.2146 0/0:1:1,0:1:41:0:0:0,-0.30103,-4.09457 dDocent_Contig_10569 11 . C T 49.0396 . AB=0.180328;ABP=57.1547;AC=1;AF=0.125;AN=8;AO=11;CIGAR=1X;DP=150;DPB=150;DPRA=2.05618;EPP=26.8965;EPPR=304.845;GTI=0;LEN=1;MEANALT=1;MQM=25.4545;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.992806;PAO=0;PQA=0;PQR=0;PRO=0;QA=441;QR=5584;RO=139;RPL=0;RPP=26.8965;RPPR=304.845;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=139;SRP=304.845;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:61:50,11:50:2007:11:441:-6.30189,0,-162.461 0/0:34:34,0:34:1372:0:0:0,-10.235,-123.736 0/0:30:30,0:30:1208:0:0:0,-9.0309,-108.993 0/0:25:25,0:25:997:0:0:0,-7.52575,-90.0271 dDocent_Contig_10570 15 . T A 927.334 . AB=0.301587;ABP=46.0951;AC=4;AF=0.5;AN=8;AO=38;CIGAR=1X;DP=126;DPB=126;DPRA=0;EPP=85.5263;EPPR=194.1;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=0.965909;PAO=0;PQA=0;PQR=0;PRO=0;QA=1518;QR=3558;RO=88;RPL=0;RPP=85.5263;RPPR=194.1;RPR=38;RUN=1;SAF=38;SAP=85.5263;SAR=0;SRF=88;SRP=194.1;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:12,12:12:488:12:480:-36.3265,0,-37.0466 0/1:43:31,12:31:1260:12:478:-30.426,0,-100.72 0/1:31:24,7:24:967:7:284:-16.6019,0,-77.9979 0/1:28:21,7:21:843:7:276:-16.777,0,-67.754 dDocent_Contig_10571 7 . A G 66.1796 . AB=0.375;ABP=4.09604;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=32;DPB=32;DPRA=1;EPP=9.52472;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=115;QR=1119;RO=29;RPL=0;RPP=9.52472;RPPR=65.983;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:7:7,0:7:267:0:0:0,-2.10721,-24.3926 0/0:2:2,0:2:78:0:0:0,-0.60206,-7.40347 0/1:8:5,3:5:194:3:115:-8.31665,0,-15.4246 0/0:15:15,0:15:580:0:0:0,-4.51545,-52.5431 dDocent_Contig_10572 25 . A G 1768.78 . AB=0.472868;ABP=3.83512;AC=4;AF=0.5;AN=8;AO=61;CIGAR=1X;DP=129;DPB=129;DPRA=0;EPP=135.47;EPPR=150.67;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2464;QR=2655;RO=68;RPL=0;RPP=135.47;RPPR=150.67;RPR=61;RUN=1;SAF=61;SAP=135.47;SAR=0;SRF=68;SRP=150.67;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:45:19,26:19:751:26:1056:-81.7816,0,-54.3661 0/1:49:37,12:37:1430:12:484:-29.16,0,-114.193 0/1:28:8,20:8:317:20:802:-64.069,0,-20.4666 0/1:7:4,3:4:157:3:122:-9.26528,0,-12.4007 dDocent_Contig_10573 14 . T C 206.993 . AB=0.0694444;ABP=466.74;AC=2;AF=0.25;AN=8;AO=22;CIGAR=1X2M1X3M;DP=398;DPB=398;DPRA=0;EPP=50.7827;EPPR=708.739;GTI=0;LEN=1;MEANALT=3.25;MQM=59;MQMR=56.9385;NS=4;NUMALT=3;ODDS=5.55112e-17;PAIRED=0.954545;PAIREDR=0.923077;PAO=0;PQA=0;PQR=0;PRO=0;QA=840;QR=12768;RO=325;RPL=0;RPP=50.7827;RPPR=708.739;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=325;SRP=708.739;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:132:106,9,12,0:106:4164:9,12,0:339,452,0:-4.85282,-8.99056,-335.547,0,-301.491,-325.651,-36.762,-338.256,-329.263,-366.028 0|0:110:100,4,2,3:100:3947:4,2,3:154,75,107:0,-17.4538,-330.134,-23.9604,-325.195,-337.236,-21.3933,-322.62,-329.121,-334.361 0|0:114:87,11,4,12:87:3406:11,4,12:436,163,462:-11.7243,-2.02245,-259.807,-24.4641,-249.669,-284.357,0,-225.196,-247.639,-257.476 0|1:42:32,6,4,0:32:1251:6,4,0:233,150,0:-9.51898,0,-101.051,-6.87167,-90.5737,-108.513,-19.1519,-102.857,-109.717,-122.001 dDocent_Contig_10574 8 . A G 40.9418 . AB=0.176471;ABP=18.4661;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=56;DPB=56;DPRA=3.30769;EPP=13.8677;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=191;QR=1937;RO=51;RPL=0;RPP=13.8677;RPPR=113.755;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:26:24,2:24:924:2:74:0,-0.800904,-76.4511 0/0:4:4,0:4:147:0:0:0,-1.20412,-13.5885 0/0:9:9,0:9:333:0:0:0,-2.70927,-30.3179 0/1:17:14,3:14:533:3:117:-5.79287,0,-43.1963 dDocent_Contig_10575 85 . T A 111.856 . AB=0.2;ABP=30.3709;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=92;DPB=92;DPRA=1.84211;EPP=18.2106;EPPR=187.585;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=253;QR=3025;RO=85;RPL=7;RPP=18.2106;RPPR=187.585;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=85;SRP=187.585;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:35:28,7:28:1006:7:253:-12.5834,0,-80.3157 0/0:39:39,0:39:1386:0:0:0,-11.7402,-125.035 0/0:3:3,0:3:100:0:0:0,-0.90309,-9.32912 0/0:15:15,0:15:533:0:0:0,-4.51545,-48.3039 dDocent_Contig_10576 107 . N T 363.63 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=11;CIGAR=1X;DP=11;DPB=11;DPRA=0;EPP=26.8965;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=382;QR=0;RO=0;RPL=0;RPP=26.8965;RPPR=0;RPR=11;RUN=1;SAF=0;SAP=26.8965;SAR=11;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1:0,1:0:0:1:35:-3.49863,-0.30103,0 1/1:5:0,5:0:0:5:174:-16.002,-1.50515,0 1/1:4:0,4:0:0:4:138:-12.7604,-1.20412,0 1/1:1:0,1:0:0:1:35:-3.49863,-0.30103,0 dDocent_Contig_10578 43 . G T 33.7172 . AB=0.1875;ABP=16.582;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=51;DPB=51;DPRA=1.37143;EPP=9.52472;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.851064;PAO=0;PQA=0;PQR=0;PRO=0;QA=106;QR=1804;RO=47;RPL=0;RPP=9.52472;RPPR=105.07;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:6:6,0:6:234:0:0:0,-1.80618,-21.4308 0/0:6:6,0:6:230:0:0:0,-1.80618,-21.0652 0/0:23:22,0:22:850:0:0:0,-6.62266,-76.5744 0/1:16:13,3:13:490:3:106:-5.07047,0,-39.6281 dDocent_Contig_10579 38 . A T 167.677 . AB=0.2;ABP=38.1882;AC=2;AF=0.25;AN=8;AO=10;CIGAR=1X;DP=85;DPB=85;DPRA=1.55556;EPP=24.725;EPPR=165.871;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=407;QR=2967;RO=75;RPL=0;RPP=24.725;RPPR=165.871;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=75;SRP=165.871;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:23,4:23:905:4:164:-7.02209,0,-73.6224 0/0:25:24,1:24:962:1:41:0,-3.43118,-82.7831 0/0:15:15,0:15:592:0:0:0,-4.51545,-53.6134 0/1:18:13,5:13:508:5:202:-13.1435,0,-40.6446 dDocent_Contig_10580 76 . G A 886.323 . AB=0.373626;ABP=15.6335;AC=3;AF=0.5;AN=6;AO=34;CIGAR=1X;DP=91;DPB=91;DPRA=0;EPP=76.8404;EPPR=126.784;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1339;QR=2226;RO=57;RPL=34;RPP=76.8404;RPPR=126.784;RPR=0;RUN=1;SAF=34;SAP=76.8404;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 0/1:51:38,13:38:1495:13:503:-30.2561,0,-119.445 0/1:27:12,15:12:450:15:607:-46.8399,0,-32.7014 0/1:13:7,6:7:281:6:229:-17.0592,0,-21.7488 dDocent_Contig_10581 125 . T C 106.873 . AB=0.164557;ABP=80.2213;AC=3;AF=0.375;AN=8;AO=13;CIGAR=1X;DP=90;DPB=90;DPRA=2.39394;EPP=31.2394;EPPR=168.042;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=430;QR=2564;RO=76;RPL=0;RPP=31.2394;RPPR=168.042;RPR=13;RUN=1;SAF=0;SAP=31.2394;SAR=13;SRF=0;SRP=168.042;SRR=76;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:15,4:15:500:4:140:-7.22536,0,-39.5983 0/1:28:23,5:23:772:5:152:-5.55096,0,-61.3631 0/1:32:27,4:27:911:4:138:-3.30349,0,-72.8896 0/0:11:11,0:11:381:0:0:0,-3.31133,-34.6236 dDocent_Contig_10582 14 . G T 377.048 . AB=0.357143;ABP=5.49198;AC=3;AF=0.375;AN=8;AO=13;CIGAR=1X;DP=74;DPB=74;DPRA=0.787879;EPP=31.2394;EPPR=133.299;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=514;QR=2371;RO=60;RPL=0;RPP=31.2394;RPPR=133.299;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:22:21,0:21:820:0:0:0,-6.32163,-73.7102 1/1:7:0,7:0:0:7:271:-24.7552,-2.10721,0 0/1:14:9,5:9:351:5:202:-14.3474,0,-27.7353 0/0:31:30,1:30:1200:1:41:0,-5.23736,-104.184 dDocent_Contig_10583 107 . N A 316.573 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=10;CIGAR=1X;DP=10;DPB=10;DPRA=0;EPP=24.725;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=58.4;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0.6;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=341;QR=0;RO=0;RPL=0;RPP=24.725;RPPR=0;RPR=10;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:6:0,6:0:0:6:201:-18.4188,-1.80618,0 ./.:.:.:.:.:.:.:. 1/1:4:0,4:0:0:4:140:-12.9373,-1.20412,0 ./.:.:.:.:.:.:.:. dDocent_Contig_10584 29 . G A 47.4737 . AB=0.137931;ABP=36.0317;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=83;DPB=83;DPRA=1.61111;EPP=11.6962;EPPR=174.557;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.987342;PAO=0;PQA=0;PQR=0;PRO=0;QA=161;QR=3124;RO=79;RPL=0;RPP=11.6962;RPPR=174.557;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=79;SRP=174.557;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:25,4:25:1000:4:161:-6.14503,0,-81.565 0/0:35:35,0:35:1381:0:0:0,-10.536,-124.548 0/0:17:17,0:17:661:0:0:0,-5.11751,-59.8132 0/0:2:2,0:2:82:0:0:0,-0.60206,-7.77968 dDocent_Contig_10585 55 . A C 1308.73 . AB=0.37594;ABP=20.7903;AC=4;AF=0.5;AN=8;AO=50;CIGAR=1X;DP=133;DPB=133;DPRA=0;EPP=111.584;EPPR=183.243;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.96;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1966;QR=3267;RO=83;RPL=50;RPP=111.584;RPPR=183.243;RPR=0;RUN=1;SAF=50;SAP=111.584;SAR=0;SRF=83;SRP=183.243;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:3,20:3:104:20:796:-65.0293,0,-2.77881 0/1:33:26,7:26:1036:7:246:-12.5371,0,-83.6022 0/1:50:36,14:36:1408:14:562:-35.8709,0,-111.925 0/1:27:18,9:18:719:9:362:-24.8162,0,-56.9088 dDocent_Contig_10586 144 . C T 429.367 . AB=0.338983;ABP=16.2968;AC=2;AF=0.25;AN=8;AO=21;CIGAR=1X;DP=82;DPB=82;DPRA=8.77778;EPP=48.6112;EPPR=135.47;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=741;QR=2259;RO=61;RPL=0;RPP=48.6112;RPPR=135.47;RPR=21;RUN=1;SAF=0;SAP=48.6112;SAR=21;SRF=0;SRP=135.47;SRR=61;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:32:19,13:19:693:13:458:-31.9049,0,-53.0631 0/1:27:20,7:20:758:7:247:-14.4296,0,-60.4203 0/0:20:19,1:19:700:1:36:0,-2.42232,-59.7203 0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0745 dDocent_Contig_10587 30 . T C 538.924 . AB=0.217742;ABP=88.8185;AC=3;AF=0.375;AN=8;AO=27;CIGAR=1X;DP=145;DPB=145;DPRA=1.96825;EPP=61.6401;EPPR=259.244;GTI=0;LEN=1;MEANALT=1;MQM=58.5926;MQMR=59.5932;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1067;QR=4680;RO=118;RPL=0;RPP=61.6401;RPPR=259.244;RPR=27;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=118;SRP=259.244;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:24,3:24:928:3:119:-2.96669,0,-75.6958 0/1:58:42,16:42:1673:16:632:-39.7405,0,-133.061 0/1:39:31,8:31:1242:8:316:-16.5716,0,-100.314 0/0:21:21,0:21:837:0:0:0,-6.32163,-75.4869 dDocent_Contig_10589 42 . A G 2343.47 . AB=0.378571;ABP=20.9405;AC=5;AF=0.625;AN=8;AO=79;CIGAR=1X;DP=166;DPB=166;DPRA=0;EPP=174.557;EPPR=191.928;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.949367;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3118;QR=3475;RO=87;RPL=0;RPP=174.557;RPPR=191.928;RPR=79;RUN=1;SAF=79;SAP=174.557;SAR=0;SRF=87;SRP=191.928;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:58:33,25:33:1328:25:1001:-72.9257,0,-102.321 0/1:66:48,18:48:1904:18:727:-45.8871,0,-151.701 0/1:16:6,10:6:243:10:394:-30.9998,0,-17.4317 1/1:26:0,26:0:0:26:996:-89.9323,-7.82678,0 dDocent_Contig_10590 15 . A G 257.12 . AB=0.149606;ABP=138.445;AC=3;AF=0.375;AN=8;AO=19;CIGAR=1X;DP=192;DPB=192;DPRA=0.651282;EPP=44.2683;EPPR=378.675;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.5491;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.988439;PAO=0;PQA=0;PQR=0;PRO=0;QA=758;QR=6877;RO=173;RPL=0;RPP=44.2683;RPPR=378.675;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=173;SRP=378.675;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:74:66,8:66:2616:8:320:-6.88829,0,-212.666 0/0:65:65,0:65:2571:0:0:0,-19.5669,-229.713 0/1:38:30,8:30:1207:8:317:-17.4569,0,-97.4675 0/1:15:12,3:12:483:3:121:-6.76475,0,-39.3067 dDocent_Contig_10591 10 . A G 52.5806 . AB=0.153846;ABP=30.0702;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X3M1X;DP=193;DPB=193;DPRA=0.368794;EPP=13.8677;EPPR=409.076;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.2;PAIREDR=0.989305;PAO=0;PQA=0;PQR=0;PRO=0;QA=198;QR=7385;RO=187;RPL=0;RPP=13.8677;RPPR=409.076;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=187;SRP=409.076;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:89:88,0:88:3488:0:0:0,-26.4906,-313.59 0|0:52:52,0:52:2064:0:0:0,-15.6536,-185.959 0|0:26:25,1:25:971:1:38:0,-4.02951,-83.8949 0|1:26:22,4:22:862:4:160:-6.95702,0,-70.0698 dDocent_Contig_10592 8 . A G 133.67 . AB=0.16129;ABP=64.7922;AC=1;AF=0.125;AN=8;AO=17;CIGAR=1X;DP=177;DPB=177;DPRA=3.35417;EPP=39.9253;EPPR=348.274;GTI=0;LEN=1;MEANALT=1;MQM=57.9412;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.941176;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=647;QR=6025;RO=159;RPL=0;RPP=39.9253;RPPR=348.274;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=159;SRP=348.274;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:62:52,10:52:1969:10:378:-14.7644,0,-158.786 0/0:71:65,6:65:2477:6:230:0,-0.30923,-202.068 0/0:28:27,1:27:1014:1:39:0,-4.53228,-87.6709 0/0:16:15,0:15:565:0:0:0,-4.51545,-51.0609 dDocent_Contig_10594 122 . A G 146.487 . AB=0.229167;ABP=33.5919;AC=2;AF=0.25;AN=8;AO=11;CIGAR=1X;DP=62;DPB=62;DPRA=3.42857;EPP=26.8965;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=354;QR=1734;RO=51;RPL=0;RPP=26.8965;RPPR=113.755;RPR=11;RUN=1;SAF=0;SAP=26.8965;SAR=11;SRF=0;SRP=113.755;SRR=51;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:7,6:7:242:6:182:-12.7637,0,-18.2043 0/1:35:30,5:30:1036:5:172:-5.28237,0,-83.0143 0/0:13:13,0:13:422:0:0:0,-3.91339,-38.2911 0/0:1:1,0:1:34:0:0:0,-0.30103,-3.39891 dDocent_Contig_10595 19 . A G 2262 . AB=0.475309;ABP=3.86817;AC=5;AF=0.625;AN=8;AO=78;CIGAR=1X;DP=163;DPB=163;DPRA=0;EPP=172.385;EPPR=187.585;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3101;QR=3443;RO=85;RPL=0;RPP=172.385;RPPR=187.585;RPR=78;RUN=1;SAF=78;SAP=172.385;SAR=0;SRF=85;SRP=187.585;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:59:32,27:32:1284:27:1057:-77.6499,0,-98.0626 0/1:62:30,32:30:1222:32:1283:-97.0716,0,-91.5837 0/1:41:23,18:23:937:18:720:-52.7811,0,-72.2882 1/1:1:0,1:0:0:1:41:-4.09457,-0.30103,0 dDocent_Contig_10597 8 . A G 111.271 . AB=0.1;ABP=16.9077;AC=3;AF=0.375;AN=8;AO=4;CIGAR=1X;DP=40;DPB=40;DPRA=0.481481;EPP=11.6962;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.972222;PAO=0;PQA=0;PQR=0;PRO=0;QA=155;QR=1359;RO=36;RPL=0;RPP=11.6962;RPPR=81.1833;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:9,1:9:345:1:39:-0.886264,0,-28.3979 0/0:19:19,0:19:704:0:0:0,-5.71957,-63.6835 0/0:8:8,0:8:310:0:0:0,-2.40824,-28.2636 1/1:3:0,3:0:0:3:116:-10.8177,-0.90309,0 dDocent_Contig_10598 61 . A C 2216.1 . AB=0.0705128;ABP=252.952;AC=1;AF=0.125;AN=8;AO=11;CIGAR=1M10D7M1I5M1X1M1X6M;DP=156;DPB=121.812;DPRA=0;EPP=26.8965;EPPR=63.8115;GTI=0;LEN=1;MEANALT=6;MQM=40;MQMR=60;NS=4;NUMALT=6;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=344;QR=1099;RO=28;RPL=11;RPP=26.8965;RPPR=63.8115;RPR=0;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:34:1,4,0,2,1,3,21:1:39:4,0,2,1,3,21:128,0,66,27,102,714:-64.4969,-54.7259,-56.7297,-64.798,-57.9339,-68.0057,-59.6285,-52.7647,-62.8364,-62.2343,-62.6899,-55.8261,-65.8976,-60.7284,-65.5966,-56.8198,-49.9561,-60.0278,-54.8585,-57.9199,-59.1247,-6.8639,0,-10.0767,-4.90437,-7.97003,-2.09222,-3.75507 0|0:44:8,4,4,0,6,0,20:8:312:4,4,0,6,0,20:114,123,0,185,0,681:-52.8592,-46.4826,-70.9374,-45.5975,-62.4734,-70.053,-55.2674,-72.1415,-71.2571,-80.9262,-40.8043,-57.6811,-56.7962,-66.4642,-64.658,-55.2674,-72.1415,-71.2571,-80.9262,-66.4642,-80.9262,0,-16.8969,-16.01,-25.6771,-11.2189,-25.6771,-19.6565 0|0:49:11,2,4,1,4,0,25:11:434:2,4,1,4,0,25:68,113,25,130,0,836:-64.3969,-62.3682,-97.4935,-58.9125,-89.3003,-93.4351,-65.7733,-96.1607,-92.7045,-101.199,-57.4805,-87.8693,-84.4136,-91.2736,-92.0043,-67.7082,-98.0956,-94.6392,-101.5,-93.2084,-103.435,0,-30.4164,-26.9667,-33.822,-25.5315,-35.7548,-28.2291 0|0:29:8,1,0,0,2,0,17:8:314:1,0,0,2,0,17:34,0,0,61,0,608:-47.2521,-46.9893,-72.5293,-49.6604,-72.8304,-75.501,-49.6604,-72.8304,-75.501,-75.501,-44.8598,-68.03,-70.7004,-70.7004,-70.0984,-49.6604,-72.8304,-75.501,-75.501,-70.7004,-75.501,0,-23.2496,-25.9197,-25.9197,-21.1242,-25.9197,-20.8022 dDocent_Contig_10599 17 . C G 573.311 . AB=0.05;ABP=73.366;AC=0;AF=0;AN=8;AO=2;CIGAR=2X;DP=135;DPB=135;DPRA=1.63265;EPP=7.35324;EPPR=220.158;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=0.96;PAO=0;PQA=0;PQR=0;PRO=0;QA=79;QR=3839;RO=100;RPL=0;RPP=7.35324;RPPR=220.158;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=100;SRP=220.158;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:47:44,0,3,0:44:1697:0,3,0:0,116,0:0,-13.2453,-152.594,-3.33142,-143.066,-142.163,-13.2453,-152.594,-143.066,-152.594 0|0:46:25,0,20,0:25:969:0,20,0:0,743,0:-53.3273,-60.853,-140.469,0,-79.68,-73.6594,-60.853,-140.469,-79.68,-140.469 0|0:40:29,2,5,3:29:1095:2,5,3:79,196,119:-7.40095,-9.62552,-98.7688,0,-83.2514,-88.2484,-6.32684,-89.573,-79.9555,-95.172 0|0:2:2,0,0,0:2:78:0,0,0:0,0,0:0,-0.60206,-7.40347,-0.60206,-7.40347,-7.40347,-0.60206,-7.40347,-7.40347,-7.40347 dDocent_Contig_10600 34 . T G 11976.2 . AB=0.901478;ABP=287.216;AC=6;AF=0.75;AN=8;AO=371;CIGAR=1X;DP=400;DPB=400;DPRA=0;EPP=808.627;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=0.991914;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=14352;QR=1094;RO=29;RPL=0;RPP=808.627;RPPR=65.983;RPR=371;RUN=1;SAF=371;SAP=808.627;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:115:10,105:10:385:105:4088:-333.325,0,-0.384892 1/1:114:3,111:3:105:111:4284:-375.79,-24.5221,0 0/1:88:10,78:10:367:78:3027:-246.076,0,-6.87889 1/1:83:6,77:6:237:77:2953:-244.21,-3.28182,0 dDocent_Contig_10601 67 . T C 1169.94 . AB=0.518182;ABP=3.32615;AC=4;AF=0.5;AN=8;AO=57;CIGAR=2M1X2M;DP=110;DPB=111.2;DPRA=0;EPP=126.784;EPPR=87.6977;GTI=0;LEN=1;MEANALT=2.5;MQM=42.3333;MQMR=48.3846;NS=4;NUMALT=4;ODDS=0;PAIRED=0.842105;PAIREDR=0.74359;PAO=0;PQA=0;PQR=0;PRO=0;QA=1741;QR=1373;RO=39;RPL=0;RPP=126.784;RPPR=87.6977;RPR=57;RUN=1;SAF=0;SAP=126.784;SAR=57;SRF=0;SRP=87.6977;SRR=39;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:35:13,0,2,5,15:13:463:0,2,5,15:0,69,65,345:-20.583,-24.4964,-53.6611,-19.07,-48.2418,-47.6398,-21.4856,-50.6429,-45.224,-49.1377,0,-29.2086,-23.7854,-26.2159,-24.6932 0|1:18:9,0,0,0,9:9:321:0,0,0,9:0,0,0,313:-22.9496,-25.6588,-46.0001,-25.6588,-46.0001,-46.0001,-25.6588,-46.0001,-46.0001,-46.0001,0,-20.6567,-20.6567,-20.6567,-17.9475 0|1:34:9,3,0,0,21:9:321:3,0,0,21:100,0,0,668:-49.9352,-45.2392,-70.5052,-52.6444,-71.4083,-78.8125,-52.6444,-71.4083,-78.8125,-78.8125,0,-18.7934,-26.1889,-26.1889,-19.8673 0|1:23:8,2,0,0,12:8:268:2,0,0,12:70,0,0,415:-30.9241,-28.7562,-49.8468,-33.3324,-50.4489,-55.0278,-33.3324,-50.4489,-55.0278,-55.0278,0,-17.1423,-21.7171,-21.7171,-18.1048 dDocent_Contig_10602 80 . C T 31.4256 . AB=0.333333;ABP=4.45795;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X;DP=48;DPB=48;DPRA=0.428571;EPP=7.35324;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.956522;PAO=0;PQA=0;PQR=0;PRO=0;QA=70;QR=1540;RO=46;RPL=2;RPP=7.35324;RPPR=102.898;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:11,0:11:369:0:0:0,-3.31133,-33.5346 0/0:18:18,0:18:620:0:0:0,-5.41854,-56.1241 0/0:13:13,0:13:421:0:0:0,-3.91339,-38.201 0/1:6:4,2:4:130:2:70:-4.84122,0,-10.2151 dDocent_Contig_10603 38 . G A 221.573 . AB=0.215686;ABP=38.8183;AC=2;AF=0.25;AN=8;AO=13;CIGAR=1X;DP=79;DPB=79;DPRA=26;EPP=31.2394;EPPR=146.327;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.878788;PAO=0;PQA=0;PQR=0;PRO=0;QA=525;QR=2610;RO=66;RPL=0;RPP=31.2394;RPPR=146.327;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=66;SRP=146.327;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:27:25,2:25:984:2:79:0,-0.630565,-81.3606 0/1:27:24,3:24:951:3:122:-3.24468,0,-77.7597 0/1:24:16,8:16:634:8:324:-22.3036,0,-50.1663 0/0:1:1,0:1:41:0:0:0,-0.30103,-4.09457 dDocent_Contig_10604 30 . A C 635.622 . AB=0.40678;ABP=7.46366;AC=4;AF=0.5;AN=8;AO=24;CIGAR=1X;DP=59;DPB=59;DPRA=0;EPP=55.1256;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=969;QR=1399;RO=35;RPL=0;RPP=55.1256;RPPR=79.0118;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:4,7:4:163:7:280:-22.2604,0,-11.7471 0/1:22:19,3:19:749:3:123:-4.84213,0,-61.1044 0/1:15:6,9:6:244:9:366:-28.7897,0,-17.8234 0/1:11:6,5:6:243:5:200:-15.0677,0,-18.9368 dDocent_Contig_10605 12 . A G 1025.43 . AB=0.382353;ABP=15.2727;AC=4;AF=0.5;AN=8;AO=39;CIGAR=2X;DP=102;DPB=102;DPRA=0;EPP=87.6977;EPPR=139.813;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.974359;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1546;QR=2469;RO=63;RPL=0;RPP=87.6977;RPPR=139.813;RPR=39;RUN=1;SAF=39;SAP=87.6977;SAR=0;SRF=63;SRP=139.813;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:9:7,2:7:275:2:80:-4.8823,0,-22.4088 0|1:18:16,2:16:631:2:80:-2.17325,0,-51.706 0|1:48:22,26:22:860:26:1033:-78.815,0,-63.2618 0|1:27:18,9:18:703:9:353:-24.003,0,-55.4713 dDocent_Contig_10606 37 . T C 536.073 . AB=0.295455;ABP=19.0002;AC=4;AF=0.5;AN=8;AO=19;CIGAR=1X;DP=59;DPB=59;DPRA=1.85185;EPP=44.2683;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.736842;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=768;QR=1589;RO=40;RPL=0;RPP=44.2683;RPPR=89.8692;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:6:0,6:0:0:6:245:-22.4295,-1.80618,0 0/1:26:22,4:22:864:4:164:-7.32312,0,-70.2389 0/1:18:9,9:9:363:9:359:-27.2526,0,-27.6152 0/0:9:9,0:9:362:0:0:0,-2.70927,-32.9436 dDocent_Contig_10607 11 . G A 406.055 . AB=0.257143;ABP=38.8706;AC=2;AF=0.25;AN=8;AO=18;CIGAR=2X;DP=92;DPB=92;DPRA=3.18182;EPP=42.0968;EPPR=161.528;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=709;QR=2776;RO=73;RPL=0;RPP=42.0968;RPPR=161.528;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=73;SRP=161.528;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:15:15,0:15:565:0:0:0,-4.51545,-51.1841 0|1:49:33,16:33:1254:16:630:-42.2885,0,-98.4028 0|1:21:19,2:19:728:2:79:-1.176,0,-59.5295 0|0:7:6,0:6:229:0:0:0,-1.80618,-20.8267 dDocent_Contig_10608 107 . N C 46.5956 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=2;CIGAR=1X3M1X2M1X;DP=3;DPB=3;DPRA=2;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=24;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=68;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. 1|1:1:0,0:0:0:0:0:0,0,0 1|1:2:0,2:0:0:2:68:-4.48165,-0.60206,0 .:.:.:.:.:.:.:. dDocent_Contig_10609 8 . A G 61.313 . AB=0.3;ABP=6.48466;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X3M2X;DP=69;DPB=69;DPRA=2.13636;EPP=11.6962;EPPR=141.985;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=149;QR=2393;RO=64;RPL=0;RPP=11.6962;RPPR=141.985;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=64;SRP=141.985;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:10:7,3:7:264:3:113:-7.52924,0,-21.1098 0|0:37:35,1:35:1309:1:36:0,-7.62345,-114.482 0|0:10:10,0:10:371:0:0:0,-3.0103,-33.7396 0|0:12:12,0:12:449:0:0:0,-3.61236,-40.7566 dDocent_Contig_10610 17 . T G 66.5577 . AB=0.151515;ABP=37.8197;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=97;DPB=97;DPRA=1.54688;EPP=13.8677;EPPR=202.786;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=199;QR=3719;RO=92;RPL=0;RPP=13.8677;RPPR=202.786;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=92;SRP=202.786;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:15:15,0:15:610:0:0:0,-4.51545,-55.2378 0/0:41:41,0:41:1659:0:0:0,-12.3422,-149.531 0/1:33:28,5:28:1124:5:199:-8.35474,0,-91.5087 0/0:8:8,0:8:326:0:0:0,-2.40824,-29.7097 dDocent_Contig_10611 107 . N G 97.967 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=105;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:105:-9.79616,-0.90309,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_10612 19 . T G 3766.45 . AB=0.476534;ABP=4.33513;AC=4;AF=0.5;AN=8;AO=132;CIGAR=2X;DP=277;DPB=277;DPRA=0;EPP=289.645;EPPR=315.702;GTI=0;LEN=1;MEANALT=1.25;MQM=59.9394;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5183;QR=5717;RO=144;RPL=0;RPP=289.645;RPPR=315.702;RPR=132;RUN=1;SAF=132;SAP=289.645;SAR=0;SRF=144;SRP=315.702;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:83:41,41:41:1615:41:1616:-120.581,0,-120.497 0|1:113:60,53:60:2373:53:2072:-152.662,0,-179.714 0|1:50:32,18:32:1285:18:695:-47.8135,0,-100.863 0|1:31:11,20:11:444:20:800:-62.9865,0,-30.9834 dDocent_Contig_10613 53 . C T 56.3469 . AB=0.173913;ABP=24.253;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=94;DPB=94;DPRA=3.47619;EPP=16.0391;EPPR=191.928;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=231;QR=3365;RO=87;RPL=6;RPP=16.0391;RPPR=191.928;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=87;SRP=191.928;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:19,4:19:702:4:151:-7.03249,0,-56.5601 0/0:50:48,2:48:1859:2:80:0,-7.45971,-159.931 0/0:18:17,0:17:681:0:0:0,-5.11751,-61.2129 0/0:3:3,0:3:123:0:0:0,-0.90309,-11.4648 dDocent_Contig_10614 107 . N A 211.025 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=7;CIGAR=1X;DP=7;DPB=7;DPRA=0;EPP=18.2106;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=224;QR=0;RO=0;RPL=0;RPP=18.2106;RPPR=0;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0 1/1:4:0,4:0:0:4:116:-10.7259,-1.20412,0 ./.:.:.:.:.:.:.:. dDocent_Contig_10615 8 . A T 2945.6 . AB=0.0387597;ABP=241.384;AC=4;AF=0.5;AN=8;AO=5;CIGAR=1X3M1X3M2X2M1X;DP=203;DPB=203;DPRA=0;EPP=13.8677;EPPR=144.156;GTI=0;LEN=1;MEANALT=3;MQM=40;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=0.815385;PAO=0;PQA=0;PQR=0;PRO=0;QA=197;QR=2510;RO=65;RPL=0;RPP=13.8677;RPPR=144.156;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=65;SRP=144.156;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:44:11,0,30,3:11:429:0,30,3:0,1176,119:-86.2445,-89.5559,-124.826,0,-35.2806,-26.2497,-80.519,-115.789,-26.2486,-114.886 0|1:85:26,13,43,2:26:991:13,43,2:506,1672,78:-119.644,-88.8124,-166.195,0,-42.647,-68.3563,-121.51,-164.148,-75.3401,-202.203 0|1:44:20,5,17,0:20:785:5,17,0:195,672,0:-45.0559,-36.2052,-99.2736,0,-49.7086,-59.4584,-51.0765,-100.779,-64.5759,-115.649 0|1:30:8,4,18,0:8:305:4,18,0:159,699,0:-51.0131,-41.3557,-65.1779,0,-12.9685,-19.6105,-53.4214,-66.382,-25.0291,-78.4466 dDocent_Contig_10616 10 . T C 119.513 . AB=0.173913;ABP=45.4956;AC=2;AF=0.25;AN=8;AO=10;CIGAR=1X;DP=86;DPB=86;DPRA=2.85185;EPP=24.725;EPPR=168.042;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.921053;PAO=0;PQA=0;PQR=0;PRO=0;QA=393;QR=2904;RO=76;RPL=0;RPP=24.725;RPPR=168.042;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=76;SRP=168.042;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:31:29,2:29:1118:2:77:0,-2.02373,-93.6096 0/1:34:29,5:29:1113:5:200:-8.14452,0,-90.2333 0/1:12:9,3:9:327:3:116:-7.20466,0,-26.1608 0/0:9:9,0:9:346:0:0:0,-2.70927,-31.4987 dDocent_Contig_10618 1 . N G 71.1989 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=75;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:75:-7.1188,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_10619 27 . G C 332.615 . AB=0.306122;ABP=19.0083;AC=3;AF=0.375;AN=8;AO=15;CIGAR=1X;DP=95;DPB=95;DPRA=0.355072;EPP=35.5824;EPPR=176.728;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=581;QR=3171;RO=80;RPL=0;RPP=35.5824;RPPR=176.728;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=80;SRP=176.728;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:46:46,0:46:1819:0:0:0,-13.8474,-163.922 0/1:23:19,4:19:747:4:161:-7.95158,0,-60.6284 0/1:8:4,4:4:160:4:161:-12.467,0,-12.3747 0/1:18:11,7:11:445:7:259:-18.2409,0,-34.9875 dDocent_Contig_10620 53 . A C 108.597 . AB=0.5;ABP=3.0103;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=62;DPB=62;DPRA=0.444444;EPP=11.6962;EPPR=128.956;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=162;QR=2307;RO=58;RPL=4;RPP=11.6962;RPPR=128.956;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:8:8,0:8:324:0:0:0,-2.40824,-29.5294 0/0:32:32,0:32:1291:0:0:0,-9.63296,-116.455 0/0:14:14,0:14:533:0:0:0,-4.21442,-48.2967 0/1:8:4,4:4:159:4:162:-12.5587,0,-12.2835 dDocent_Contig_10621 18 . G A 67.4201 . AB=0.388889;ABP=4.9405;AC=2;AF=0.25;AN=8;AO=9;CIGAR=1X;DP=38;DPB=38;DPRA=0;EPP=22.5536;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=24;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.758621;PAO=0;PQA=0;PQR=0;PRO=0;QA=364;QR=1179;RO=29;RPL=0;RPP=22.5536;RPPR=65.983;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:6:4,2:4:162:2:81:-2.73551,0,-13.1608 0/0:11:10,1:10:404:1:41:0,-0.919876,-34.3286 0/1:12:7,5:7:285:5:203:-7.38431,0,-22.412 0/0:9:8,1:8:328:1:39:0,-0.322738,-27.5038 dDocent_Contig_10622 10 . G T 57.969 . AB=0.116883;ABP=101.178;AC=2;AF=0.25;AN=8;AO=9;CIGAR=1X;DP=119;DPB=119;DPRA=1.83333;EPP=22.5536;EPPR=241.872;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.972727;PAO=0;PQA=0;PQR=0;PRO=0;QA=335;QR=4362;RO=110;RPL=0;RPP=22.5536;RPPR=241.872;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=110;SRP=241.872;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:25:25,0:25:966:0:0:0,-7.52575,-87.2304 0/1:31:26,5:26:1023:5:183:-7.49415,0,-83.0243 0/1:46:42,4:42:1692:4:152:-0.201652,0,-138.655 0/0:17:17,0:17:681:0:0:0,-5.11751,-61.6206 dDocent_Contig_10623 72 . G A 381.283 . AB=0.298246;ABP=23.1631;AC=3;AF=0.375;AN=8;AO=17;CIGAR=1X;DP=60;DPB=60;DPRA=6.33333;EPP=39.9253;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.823529;PAIREDR=0.837209;PAO=0;PQA=0;PQR=0;PRO=0;QA=662;QR=1478;RO=43;RPL=17;RPP=39.9253;RPPR=96.3836;RPR=0;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:9,5:9:322:5:195:-13.7077,0,-25.1071 0/1:32:24,8:24:809:8:316:-19.1721,0,-63.4827 0/1:11:7,4:7:241:4:151:-10.6463,0,-18.7118 0/0:3:3,0:3:106:0:0:0,-0.90309,-9.8891 dDocent_Contig_10624 18 . C T 44.6378 . AB=0.176471;ABP=18.4661;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=122;DPB=122;DPRA=7.8;EPP=20.3821;EPPR=250.558;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.9649;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=308;QR=4554;RO=114;RPL=0;RPP=20.3821;RPPR=250.558;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=114;SRP=250.558;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:56:54,2:54:2179:2:65:0,-10.6879,-190.099 0/0:44:41,3:41:1612:3:122:0,-1.87283,-133.936 0/1:17:14,3:14:561:3:121:-6.16269,0,-45.7151 0/0:5:5,0:5:202:0:0:0,-1.50515,-18.5621 dDocent_Contig_10625 21 . C A 2425.37 . AB=0.173028;ABP=732.901;AC=4;AF=0.5;AN=8;AO=136;CIGAR=1X;DP=786;DPB=786;DPRA=0;EPP=281.214;EPPR=1397.1;GTI=0;LEN=1;MEANALT=2;MQM=59.8382;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.985294;PAIREDR=0.961059;PAO=0;PQA=0;PQR=0;PRO=0;QA=5385;QR=25704;RO=642;RPL=0;RPP=298.331;RPPR=1397.1;RPR=136;RUN=1;SAF=134;SAP=281.214;SAR=2;SRF=642;SRP=1397.1;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:317:281,33:281:11236:33:1296:-22.0089,0,-915.547 0/1:284:220,61:220:8809:61:2422:-133.139,0,-707.283 0/1:99:79,19:79:3181:19:744:-37.3427,0,-256.451 0/1:86:62,23:62:2478:23:923:-57.4445,0,-197.234 dDocent_Contig_10626 45 . A C 1184.7 . AB=0.466667;ABP=3.58936;AC=5;AF=0.625;AN=8;AO=39;CIGAR=1X;DP=71;DPB=71;DPRA=0;EPP=87.6977;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1561;QR=1268;RO=32;RPL=0;RPP=87.6977;RPPR=72.4974;RPR=39;RUN=1;SAF=39;SAP=87.6977;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:11:0,11:0:0:11:443:-40.2257,-3.31133,0 0/1:27:16,11:16:646:11:443:-32.097,0,-50.3459 0/1:22:10,12:10:377:12:475:-36.4772,0,-27.6512 0/1:11:6,5:6:245:5:200:-15.0682,0,-19.1181 dDocent_Contig_10627 209 . N G 77.8076 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:82:-7.77968,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_10628 28 . A C 61.5346 . AB=0.25;ABP=9.52472;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=84;DPB=84;DPRA=0.5;EPP=9.52472;EPPR=178.9;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=123;QR=3220;RO=81;RPL=0;RPP=9.52472;RPPR=178.9;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=81;SRP=178.9;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:20:20,0:20:797:0:0:0,-6.0206,-72.0469 0/0:29:29,0:29:1147:0:0:0,-8.72987,-103.509 0/0:23:23,0:23:916:0:0:0,-6.92369,-82.7425 0/1:12:9,3:9:360:3:123:-7.85243,0,-29.1512 dDocent_Contig_10629 23 . T A 346.57 . AB=0.19;ABP=86.4817;AC=3;AF=0.375;AN=8;AO=23;CIGAR=2X1M1X;DP=154;DPB=154;DPRA=0;EPP=52.9542;EPPR=287.473;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.839695;PAO=0;PQA=0;PQR=0;PRO=0;QA=928;QR=5180;RO=131;RPL=0;RPP=52.9542;RPPR=287.473;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=131;SRP=287.473;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:32:27,5:27:1064:5:202:-8.92912,0,-86.4166 0|0:54:50,4:50:1977:4:161:0,-1.38014,-163.265 0|1:44:35,9:35:1393:9:364:-19.8796,0,-112.382 0|1:24:19,5:19:746:5:201:-11.2462,0,-60.2386 dDocent_Contig_10631 47 . C G 102.617 . AB=0.170732;ABP=41.6201;AC=2;AF=0.25;AN=8;AO=7;CIGAR=1X;DP=74;DPB=74;DPRA=1.24242;EPP=18.2106;EPPR=148.499;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=280;QR=2610;RO=67;RPL=0;RPP=18.2106;RPPR=148.499;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=67;SRP=148.499;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:8,4:8:322:4:159:-11.0798,0,-25.736 0/0:18:18,0:18:674:0:0:0,-5.41854,-60.9724 0/1:29:26,3:26:1030:3:121:-2.55033,0,-84.2657 0/0:15:15,0:15:584:0:0:0,-4.51545,-52.8913 dDocent_Contig_10633 18 . G T 471.161 . AB=0.419355;ABP=4.76149;AC=2;AF=0.25;AN=8;AO=13;CIGAR=2X;DP=42;DPB=42;DPRA=15.5;EPP=31.2394;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1.5;MQM=58.6154;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=524;QR=904;RO=23;RPL=0;RPP=31.2394;RPPR=52.9542;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:24:11,12,1:11:434:12,1:484,25:-36.726,0,-32.228,-38.1002,-33.9035,-73.5032 0|0:10:6,0,4:6:234:0,4:0,139:-9.84139,-11.6476,-30.9074,0,-19.6241,-18.4199 0|1:7:6,1,0:6:236:1,0:40,0:-1.68036,0,-19.5056,-3.48654,-19.8066,-22.9124 0|0:1:0,0,1:0:0:0,1:0,39:-3.89656,-3.89656,-3.89656,-0.30103,-0.30103,0 dDocent_Contig_10635 31 . G A 790.619 . AB=0.0731707;ABP=67.8897;AC=0;AF=0;AN=8;AO=3;CIGAR=1M1X8M1X1M1X1M;DP=83;DPB=57.2857;DPRA=3.15385;EPP=9.52472;EPPR=111.584;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=109;QR=1971;RO=50;RPL=0;RPP=9.52472;RPPR=111.584;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:41:18,3,20:18:703:3,20:109,747:-55.7421,-52.2612,-109.156,0,-48.9166,-51.7929 0|0:5:0,0,5:0:0:0,5:0,180:-16.5501,-16.5501,-16.5501,-1.50515,-1.50515,0 0|0:16:11,0,5:11:438:0,5:0,163:-10.1675,-13.4788,-49.5956,0,-36.4651,-34.9599 0|0:21:21,0,0:21:830:0,0:0,0:0,-6.32163,-75.0182,-6.32163,-75.0182,-75.0182 dDocent_Contig_10636 14 . T C 195.986 . AB=0;ABP=0;AC=0;AF=0;AN=8;AO=2;CIGAR=2X1M3X;DP=58;DPB=58;DPRA=1.375;EPP=7.35324;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=26;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=79;QR=1867;RO=48;RPL=0;RPP=7.35324;RPPR=107.241;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:22:20,2,0:20:771:2,0:79,0:0,-1.71885,-64.808,-6.0206,-65.41,-69.4421 0|0:16:16,0,0:16:627:0,0:0,0:0,-4.81648,-56.769,-4.81648,-56.769,-56.769 0|0:16:10,0,6:10:393:0,6:0,235:-16.7034,-19.7137,-52.0407,0,-32.7189,-30.9127 0|0:4:2,0,2:2:76:0,2:0,79:-6.29312,-6.89518,-13.1206,0,-6.61261,-6.01055 dDocent_Contig_10637 5 . T G 93.2027 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=2I1X3M2X;DP=3;DPB=4;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=53;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=100;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. 1|1:3:0,3:0:0:3:100:-9.31973,-0.90309,0 dDocent_Contig_10638 8 . A G 41.4431 . AB=0.16;ABP=28.1125;AC=2;AF=0.25;AN=8;AO=5;CIGAR=1X;DP=42;DPB=42;DPRA=13.6667;EPP=13.8677;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=197;QR=1417;RO=37;RPL=0;RPP=13.8677;RPPR=83.3548;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:16:15,1:15:575:1:39:0,-0.919915,-48.1948 0/1:17:14,3:14:540:3:117:-5.79287,0,-43.8277 0/0:1:1,0:1:38:0:0:0,-0.30103,-3.79727 0/1:8:7,1:7:264:1:41:-1.68633,0,-21.7113 dDocent_Contig_10639 50 . T A 70.3783 . AB=0.190476;ABP=20.4855;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=137;DPB=137;DPRA=1.01471;EPP=13.8677;EPPR=289.645;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=0.992424;PAO=0;PQA=0;PQR=0;PRO=0;QA=204;QR=5297;RO=132;RPL=5;RPP=13.8677;RPPR=289.645;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=132;SRP=289.645;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:48:47,1:47:1890:1:41:0,-10.3549,-166.205 0/0:45:45,0:45:1802:0:0:0,-13.5463,-162.393 0/1:21:17,4:17:679:4:163:-8.7368,0,-55.1196 0/0:23:23,0:23:926:0:0:0,-6.92369,-83.6448 dDocent_Contig_10640 15 . T C 3959.2 . AB=0.705882;ABP=71.8587;AC=4;AF=0.5;AN=8;AO=132;CIGAR=1X;DP=187;DPB=187;DPRA=0;EPP=289.645;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.856061;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5094;QR=2213;RO=55;RPL=0;RPP=289.645;RPPR=122.441;RPR=132;RUN=1;SAF=132;SAP=289.645;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:53:18,35:18:718:35:1336:-104.567,0,-48.9886 0/1:44:19,25:19:773:25:960:-73.4647,0,-56.6424 0/1:63:14,49:14:565:49:1905:-152.725,0,-32.2271 0/1:27:4,23:4:157:23:893:-72.5613,0,-6.37861 dDocent_Contig_10641 10 . G A 673.186 . AB=0.235294;ABP=85.7817;AC=3;AF=0.375;AN=8;AO=33;CIGAR=1X;DP=153;DPB=153;DPRA=0;EPP=74.6689;EPPR=263.587;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1292;QR=4701;RO=120;RPL=0;RPP=74.6689;RPPR=263.587;RPR=33;RUN=1;SAF=33;SAP=74.6689;SAR=0;SRF=120;SRP=263.587;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:61:55,6:55:2109:6:239:-3.52197,0,-171.631 0/1:60:42,18:42:1677:18:702:-45.4455,0,-133.098 0/0:17:16,1:16:641:1:41:0,-1.02294,-53.9301 0/1:15:7,8:7:274:8:310:-23.7458,0,-20.5087 dDocent_Contig_10643 10 . G C 2330.16 . AB=0.421348;ABP=12.5745;AC=6;AF=0.75;AN=8;AO=75;CIGAR=1X4M;DP=178;DPB=178;DPRA=0;EPP=165.871;EPPR=109.412;GTI=0;LEN=1;MEANALT=2.75;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2970;QR=1927;RO=49;RPL=0;RPP=165.871;RPPR=109.412;RPR=75;RUN=1;SAF=75;SAP=165.871;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:76:28,18,7,23:28:1098:18,7,23:715,276,888:-64.492,-14.0474,-98.932,-54.3807,-85.8087,-142.568,0,-31.431,-71.7607,-83.3775 1|1:71:7,9,13,42:7:270:9,13,42:354,509,1677:-143.021,-116.005,-135.467,-118.718,-111.767,-136.972,-6.96146,0,-2.76729,-16.5039 1|1:17:4,4,0,9:4:155:4,0,9:159,0,364:-29.1799,-17.295,-28.8187,-30.384,-30.0228,-43.1135,-0.36809,0,-13.0961,-10.3868 0|1:14:10,2,1,1:10:404:2,1,1:81,38,41:-3.67428,0,-32.7128,-3.5918,-30.2171,-36.5953,-3.29705,-29.93,-33.5118,-36.3087 dDocent_Contig_10645 147 . C G 30.8722 . AB=0.210526;ABP=16.8392;AC=2;AF=0.25;AN=8;AO=5;CIGAR=1X;DP=44;DPB=44;DPRA=1.5;EPP=13.8677;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=155;QR=1303;RO=39;RPL=0;RPP=13.8677;RPPR=87.6977;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=87.6977;SRR=39;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:8:8,0:8:276:0:0:0,-2.40824,-25.1757 0/1:13:10,3:10:332:3:93:-4.76499,0,-26.2893 0/0:17:16,1:16:531:1:31:0,-2.01806,-45.0069 0/1:6:5,1:5:164:1:31:-1.29327,0,-13.2775 dDocent_Contig_10646 13 . T G 3513.38 . AB=0.642105;ABP=19.6735;AC=5;AF=0.625;AN=8;AO=109;CIGAR=1X;DP=144;DPB=144;DPRA=0;EPP=239.701;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=0.990826;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4299;QR=1407;RO=35;RPL=0;RPP=239.701;RPPR=79.0118;RPR=109;RUN=1;SAF=109;SAP=239.701;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:49:1,48:1:27:48:1868:-165.625,-12.0507,0 0/1:49:8,41:8:322:41:1646:-133.613,0,-14.5961 0/1:29:15,14:15:609:14:559:-41.9202,0,-46.4177 0/1:17:11,6:11:449:6:226:-15.5776,0,-35.6484 dDocent_Contig_10647 63 . T C 256.153 . AB=0.625;ABP=5.18177;AC=2;AF=0.25;AN=8;AO=10;CIGAR=1X;DP=36;DPB=36;DPRA=0.8;EPP=24.725;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=363;QR=936;RO=26;RPL=10;RPP=24.725;RPPR=59.4686;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:12:12,0:12:429:0:0:0,-3.61236,-38.9471 0/1:7:1,6:1:37:6:215:-17.5908,0,-1.59062 0/0:8:8,0:8:293:0:0:0,-2.40824,-26.7215 0/1:9:5,4:5:177:4:148:-10.9727,0,-13.5674 dDocent_Contig_10648 33 . C A 154.88 . AB=0.195122;ABP=36.112;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=117;DPB=117;DPRA=1.61842;EPP=20.3821;EPPR=239.701;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=324;QR=4383;RO=109;RPL=0;RPP=20.3821;RPPR=239.701;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=109;SRP=239.701;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:41:41,0:41:1648:0:0:0,-12.3422,-148.541 0/1:41:33,8:33:1336:8:324:-17.187,0,-108.155 0/0:20:20,0:20:808:0:0:0,-6.0206,-73.0364 0/0:15:15,0:15:591:0:0:0,-4.51545,-53.526 dDocent_Contig_10649 115 . G A 390.485 . AB=0.285714;ABP=30.9292;AC=3;AF=0.375;AN=8;AO=20;CIGAR=1X;DP=98;DPB=98;DPRA=0.833333;EPP=46.4397;EPPR=161.641;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=59.5714;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.987013;PAO=0;PQA=0;PQR=0;PRO=0;QA=713;QR=2661;RO=77;RPL=0;RPP=46.4397;RPPR=170.214;RPR=20;RUN=1;SAF=0;SAP=46.4397;SAR=20;SRF=1;SRP=161.641;SRR=76;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:28:28,0:28:990:0:0:0,-8.42884,-89.4154 0/1:37:33,4:33:1138:4:142:-1.99116,0,-91.5871 0/1:24:12,11:12:403:11:394:-28.7837,0,-28.2914 0/1:9:4,5:4:130:5:177:-13.5676,0,-9.3119 dDocent_Contig_10651 117 . T A 38.9668 . AB=0.222222;ABP=9.04217;AC=3;AF=0.375;AN=8;AO=8;CIGAR=1X;DP=86;DPB=86;DPRA=0.813333;EPP=20.3821;EPPR=172.385;GTI=0;LEN=1;MEANALT=1;MQM=19;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=278;QR=2645;RO=78;RPL=0;RPP=20.3821;RPPR=172.385;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=172.385;SRR=78;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:7,2:7:225:2:69:-0.877936,0,-17.8555 0/0:50:46,4:46:1560:4:140:0,-8.06087,-133.697 0/0:25:25,0:25:860:0:0:0,-7.52575,-77.7154 1/1:2:0,2:0:0:2:69:-3.58721,-0.60206,0 dDocent_Contig_10652 30 . G A 78.6734 . AB=0.428571;ABP=3.32051;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=101;DPB=101;DPRA=0.223404;EPP=9.52472;EPPR=215.815;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=3882;RO=98;RPL=0;RPP=9.52472;RPPR=215.815;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=98;SRP=215.815;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:7:4,3:4:160:3:122:-9.26528,0,-12.6762 0/0:62:62,0:62:2462:0:0:0,-18.6639,-221.723 0/0:15:15,0:15:603:0:0:0,-4.51545,-54.6089 0/0:17:17,0:17:657:0:0:0,-5.11751,-59.4539 dDocent_Contig_10653 33 . T G 4609.72 . AB=0.671141;ABP=40.9163;AC=5;AF=0.625;AN=8;AO=148;CIGAR=1X;DP=200;DPB=200;DPRA=0;EPP=315.761;EPPR=113.755;GTI=0;LEN=1;MEANALT=1.25;MQM=59.9865;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.878378;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5783;QR=1871;RO=51;RPL=0;RPP=324.388;RPPR=113.755;RPR=148;RUN=1;SAF=147;SAP=315.761;SAR=1;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:51:3,48:3:110:48:1877:-158.884,-5.09163,0 0/1:64:17,47:17:638:47:1850:-147.449,0,-38.4826 0/1:58:21,36:21:765:36:1403:-109.069,0,-51.698 0/1:27:10,17:10:358:17:653:-50.9681,0,-24.4279 dDocent_Contig_10655 16 . T A 1749.43 . AB=0.53211;ABP=3.98647;AC=2;AF=0.25;AN=8;AO=58;CIGAR=1X;DP=140;DPB=140;DPRA=3.51613;EPP=128.956;EPPR=181.071;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2340;QR=3267;RO=82;RPL=0;RPP=128.956;RPPR=181.071;RPR=58;RUN=1;SAF=58;SAP=128.956;SAR=0;SRF=82;SRP=181.071;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:51:11,40:11:436:40:1617:-130.405,0,-24.242 0/1:58:40,18:40:1605:18:723:-47.936,0,-127.22 0/0:26:26,0:26:1034:0:0:0,-7.82678,-93.3551 0/0:5:5,0:5:192:0:0:0,-1.50515,-17.6487 dDocent_Contig_10656 74 . G A 183.666 . AB=0.229167;ABP=33.5919;AC=4;AF=0.5;AN=8;AO=11;CIGAR=1X;DP=48;DPB=48;DPRA=0;EPP=26.8965;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.972973;PAO=0;PQA=0;PQR=0;PRO=0;QA=395;QR=1252;RO=37;RPL=11;RPP=26.8965;RPPR=83.3548;RPR=0;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:9,1:9:316:1:37:-0.687529,0,-25.7672 0/1:17:12,5:12:425:5:184:-11.8009,0,-33.4687 0/1:12:11,1:11:360:1:37:-0.0854694,0,-29.1004 0/1:9:5,4:5:151:4:137:-9.95705,0,-11.1762 dDocent_Contig_10657 22 . G A 76.5947 . AB=0.428571;ABP=3.32051;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=61;DPB=61;DPRA=3.73333;EPP=16.0391;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=57.5273;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=0.666667;PAIREDR=0.618182;PAO=0;PQA=0;PQR=0;PRO=0;QA=242;QR=2191;RO=55;RPL=0;RPP=16.0391;RPPR=122.441;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:35:33,2:33:1325:2:78:0,-3.13258,-106.917 0/0:14:13,1:13:502:1:41:0,-0.119853,-41.427 0/1:7:4,3:4:160:3:123:-9.35758,0,-12.6766 0/0:5:5,0:5:204:0:0:0,-1.50515,-18.744 dDocent_Contig_10658 98 . N G 383.91 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=14;CIGAR=1X;DP=14;DPB=14;DPRA=0;EPP=25.3454;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=0.571429;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=411;QR=0;RO=0;RPL=14;RPP=33.4109;RPPR=0;RPR=0;RUN=1;SAF=13;SAP=25.3454;SAR=1;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:12:0,12:0:0:12:347:-31.5137,-3.61236,0 1/1:1:0,1:0:0:1:30:-2.99957,-0.30103,0 1/1:1:0,1:0:0:1:34:-3.39891,-0.30103,0 ./.:.:.:.:.:.:.:. dDocent_Contig_10659 117 . C T 1607.91 . AB=0.0877193;ABP=87.1644;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X3M1X;DP=95;DPB=95;DPRA=0;EPP=13.8677;EPPR=61.6401;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=147;QR=867;RO=27;RPL=0;RPP=13.8677;RPPR=61.6401;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=61.6401;SRR=27;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:22:0,4,0,18:0:0:4,0,18:137,0,617:-60.3623,-49.2393,-48.0352,-60.3623,-49.2393,-60.3623,-11.464,0,-11.464,-6.0455 0|0:35:12,1,0,22:12:399:1,0,22:10,0,745:-57.0197,-60.0434,-92.0266,-60.632,-92.3276,-92.9198,0,-31.9198,-32.5009,-25.8782 0|0:18:7,0,2,9:7:208:0,2,9:0,70,306:-22.7055,-24.8127,-41.4027,-19.1155,-35.704,-35.102,0,-16.5662,-10.859,-13.8569 0|0:20:8,0,0,11:8:260:0,0,11:0,0,376:-28.1012,-30.5095,-51.487,-30.5095,-51.487,-51.487,0,-20.9624,-20.9624,-17.651 dDocent_Contig_10660 13 . T A 457.944 . AB=0.230769;ABP=60.3038;AC=2;AF=0.25;AN=8;AO=21;CIGAR=1X;DP=132;DPB=132;DPRA=2.21951;EPP=48.6112;EPPR=6.31642;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.2703;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.243243;PAO=0;PQA=0;PQR=0;PRO=0;QA=843;QR=4019;RO=111;RPL=0;RPP=48.6112;RPPR=244.044;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=49;SRP=6.31642;SRR=62;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:39:32,7:32:1125:7:284:-14.1932,0,-89.7162 0/0:24:24,0:24:844:0:0:0,-7.22472,-76.2665 0/1:52:38,14:38:1410:14:559:-34.9991,0,-111.486 0/0:17:17,0:17:640:0:0:0,-5.11751,-57.9234 dDocent_Contig_10663 22 . T G 1219.25 . AB=0.265625;ABP=94.6193;AC=3;AF=0.375;AN=8;AO=51;CIGAR=1X;DP=264;DPB=264;DPRA=0.888889;EPP=113.755;EPPR=465.534;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2046;QR=8525;RO=213;RPL=0;RPP=113.755;RPPR=465.534;RPR=51;RUN=1;SAF=51;SAP=113.755;SAR=0;SRF=213;SRP=465.534;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:72:72,0:72:2881:0:0:0,-21.6742,-259.395 0/1:110:77,33:77:3077:33:1329:-86.7568,0,-243.888 0/1:48:35,13:35:1395:13:515:-32.2398,0,-111.357 0/1:34:29,5:29:1172:5:202:-8.32647,0,-95.5185 dDocent_Contig_10665 32 . G T 407.657 . AB=0.47619;ABP=3.1137;AC=2;AF=0.25;AN=8;AO=10;CIGAR=1X3M14D1M;DP=65;DPB=57.6316;DPRA=0;EPP=24.725;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.954545;PAO=0;PQA=0;PQR=0;PRO=0;QA=387;QR=1702;RO=44;RPL=0;RPP=24.725;RPPR=98.5551;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:17:15,0,2:15:591:0,2:0,76:-2.09675,-6.6122,-55.2454,0,-49.0145,-48.4125 0|0:27:20,0,7:20:763:0,7:0,270:-16.5326,-22.5532,-85.1401,0,-62.9711,-60.8639 0|1:15:5,8,2:5:197:8,2:309,81:-23.8579,0,-13.7916,-18.6802,-9.51758,-34.2887 0|1:6:4,2,0:4:151:2,0:78,0:-5.59712,0,-12.1502,-6.80124,-12.7522,-19.168 dDocent_Contig_10666 44 . A G 33.7601 . AB=0.142857;ABP=26.2761;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=72;DPB=72;DPRA=1.18182;EPP=11.6962;EPPR=150.67;GTI=0;LEN=1;MEANALT=1;MQM=47;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.75;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=155;QR=2660;RO=68;RPL=0;RPP=11.6962;RPPR=150.67;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=68;SRP=150.67;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:18,3:18:712:3:119:-4.77376,0,-58.0816 0/0:18:17,1:17:643:1:36:0,-4.61912,-57.3955 0/0:16:16,0:16:637:0:0:0,-4.81648,-57.6658 0/0:17:17,0:17:668:0:0:0,-5.11751,-60.4498 dDocent_Contig_10667 18 . C A 183.672 . AB=0.857143;ABP=10.7656;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=68;DPB=68;DPRA=0.344262;EPP=16.0391;EPPR=137.642;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=58.0968;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.935484;PAO=0;PQA=0;PQR=0;PRO=0;QA=241;QR=2477;RO=62;RPL=0;RPP=16.0391;RPPR=137.642;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:18:18,0:18:718:0:0:0,-5.41854,-63.4055 0/1:7:1,6:1:41:6:241:-19.9591,0,-1.98736 0/0:29:29,0:29:1170:0:0:0,-8.72987,-105.129 0/0:14:14,0:14:548:0:0:0,-4.21442,-49.5668 dDocent_Contig_10668 20 . A G 513.305 . AB=0.247312;ABP=54.5886;AC=3;AF=0.375;AN=8;AO=27;CIGAR=1X;DP=147;DPB=147;DPRA=0;EPP=61.6401;EPPR=263.587;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.966667;PAO=0;PQA=0;PQR=0;PRO=0;QA=1093;QR=4759;RO=120;RPL=0;RPP=61.6401;RPPR=263.587;RPR=27;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=120;SRP=263.587;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:54:44,10:44:1752:10:405:-20.5544,0,-141.646 0/0:54:50,4:50:1974:4:164:0,-1.10572,-162.716 0/1:30:19,11:19:753:11:442:-31.1034,0,-59.0642 0/1:9:7,2:7:280:2:82:-5.07041,0,-22.8619 dDocent_Contig_10669 41 . G T 191.859 . AB=0.232558;ABP=29.7245;AC=3;AF=0.375;AN=8;AO=10;CIGAR=1X;DP=54;DPB=54;DPRA=1.30303;EPP=24.725;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.6;PAIREDR=0.795455;PAO=0;PQA=0;PQR=0;PRO=0;QA=404;QR=1723;RO=44;RPL=0;RPP=24.725;RPPR=98.5551;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:10,2:10:401:2:81:-4.07337,0,-32.8359 0/1:13:10,3:10:395:3:121:-7.3666,0,-31.9926 0/1:18:13,5:13:521:5:202:-13.143,0,-41.8163 0/0:11:11,0:11:406:0:0:0,-3.31133,-36.8773 dDocent_Contig_10670 16 . C T 114.559 . AB=0.294118;ABP=9.26925;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X2M3X;DP=73;DPB=73;DPRA=1.43333;EPP=18.2106;EPPR=137.642;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.758065;PAO=0;PQA=0;PQR=0;PRO=0;QA=271;QR=2435;RO=62;RPL=0;RPP=18.2106;RPPR=137.642;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:16:16,0,0:16:627:0,0:0,0:0,-4.81648,-56.7665,-4.81648,-56.7665,-56.7665 0|0:26:23,2,0:23:899:2,0:78,0:0,-0.525303,-73.8115,-6.92369,-74.4135,-80.825 0|0:14:14,0,0:14:549:0,0:0,0:0,-4.21442,-49.7526,-4.21442,-49.7526,-49.7526 0|1:17:9,5,3:9:360:5,3:193,109:-13.1546,0,-28.1769,-6.97063,-20.7895,-35.7312 dDocent_Contig_10671 138 . T C 257.071 . AB=0.210526;ABP=16.8392;AC=3;AF=0.375;AN=8;AO=10;CIGAR=1X;DP=71;DPB=71;DPRA=0.543478;EPP=24.725;EPPR=135.47;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=357;QR=2139;RO=61;RPL=0;RPP=24.725;RPPR=135.47;RPR=10;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=135.47;SRR=61;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:38:38,0:38:1332:0:0:0,-11.4391,-120.169 0/0:8:8,0:8:269:0:0:0,-2.40824,-24.5353 0/1:19:15,4:15:538:4:139:-7.1324,0,-43.0347 1/1:6:0,6:0:0:6:218:-19.9726,-1.80618,0 dDocent_Contig_10672 29 . C T 364.173 . AB=0.162338;ABP=155.521;AC=4;AF=0.5;AN=8;AO=25;CIGAR=1X;DP=154;DPB=154;DPRA=0;EPP=57.2971;EPPR=280.959;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=985;QR=5109;RO=128;RPL=0;RPP=57.2971;RPPR=280.959;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=128;SRP=280.959;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:59:52,7:52:2108:7:278:-7.62761,0,-172.127 0/1:31:27,3:27:1087:3:122:-1.93296,0,-88.6772 0/1:53:40,13:40:1556:13:508:-30.1049,0,-124.315 0/1:11:9,2:9:358:2:77:-3.9975,0,-29.2665 dDocent_Contig_10674 32 . G T 37.4718 . AB=0.109091;ABP=76.0113;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=161;DPB=161;DPRA=1.5566;EPP=16.0391;EPPR=339.589;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=237;QR=6114;RO=155;RPL=0;RPP=16.0391;RPPR=339.589;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=155;SRP=339.589;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:55:49,6:49:1943:6:237:-5.14504,0,-158.522 0/0:68:68,0:68:2688:0:0:0,-20.47,-242.047 0/0:21:21,0:21:815:0:0:0,-6.32163,-73.6677 0/0:17:17,0:17:668:0:0:0,-5.11751,-60.444 dDocent_Contig_10675 10 . A T 3480.35 . AB=0.597015;ABP=19.4422;AC=4;AF=0.5;AN=8;AO=120;CIGAR=1X4M;DP=201;DPB=201;DPRA=0;EPP=263.587;EPPR=172.385;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=1.38778e-17;PAIRED=0.975;PAIREDR=0.987179;PAO=0;PQA=0;PQR=0;PRO=0;QA=4603;QR=3062;RO=78;RPL=0;RPP=263.587;RPPR=172.385;RPR=120;RUN=1;SAF=120;SAP=263.587;SAR=0;SRF=78;SRP=172.385;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:74:42,0,32:42:1635:0,32:0,1240:-89.6097,-102.253,-236.614,0,-134.749,-125.116 0|1:54:23,0,31:23:907:0,31:0,1209:-92.8417,-99.7654,-174.39,0,-75.0163,-65.6844 0|1:43:9,3,31:9:360:3,31:119,1154:-91.7113,-84.6224,-113.381,0,-19.8628,-20.3261 0|1:30:4,0,26:4:160:0,26:0,1000:-81.2705,-82.4746,-95.657,0,-13.5799,-5.75311 dDocent_Contig_10678 9 . G A 1060.84 . AB=0.347368;ABP=22.2335;AC=4;AF=0.5;AN=8;AO=33;CIGAR=1X3M1X;DP=95;DPB=95;DPRA=0;EPP=74.6689;EPPR=87.6977;GTI=0;LEN=1;MEANALT=2.25;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.878788;PAIREDR=0.692308;PAO=0;PQA=0;PQR=0;PRO=0;QA=1234;QR=1528;RO=39;RPL=0;RPP=74.6689;RPPR=87.6977;RPR=33;RUN=1;SAF=33;SAP=74.6689;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:47:8,19,18:8:307:19,18:705,603:-78.8929,-23.5961,-43.0868,-32.4831,0,-52.2655 0|1:14:6,7,1:6:231:7,1:267,32:-20.1515,0,-16.9139,-19.387,-16.452,-38.0532 0|1:17:14,3,0:14:555:3,0:117,0:-5.79287,0,-45.1777,-10.0073,-46.0808,-55.6973 0|1:17:11,4,2:11:435:4,2:145,37:-8.64503,0,-34.7735,-9.28771,-33.2822,-44.5096 dDocent_Contig_10679 132 . C T 43.9496 . AB=0.1875;ABP=16.582;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=59;DPB=59;DPRA=1.11628;EPP=9.52472;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=53.6786;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.839286;PAO=0;PQA=0;PQR=0;PRO=0;QA=117;QR=2196;RO=56;RPL=0;RPP=9.52472;RPPR=124.613;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=124.613;SRR=56;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:27:27,0:27:1036:0:0:0,-8.12781,-87.2755 0/0:7:7,0:7:277:0:0:0,-2.10721,-23.3773 0/0:9:9,0:9:359:0:0:0,-2.70927,-29.388 0/1:16:13,3:13:524:3:117:-6.0939,0,-39.0605 dDocent_Contig_10680 12 . G A 1171.85 . AB=0.268817;ABP=89.3555;AC=4;AF=0.5;AN=8;AO=50;CIGAR=1X;DP=186;DPB=186;DPRA=0;EPP=111.584;EPPR=298.331;GTI=0;LEN=1;MEANALT=1;MQM=59.96;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.941176;PAO=0;PQA=0;PQR=0;PRO=0;QA=1991;QR=5303;RO=136;RPL=0;RPP=111.584;RPPR=298.331;RPR=50;RUN=1;SAF=50;SAP=111.584;SAR=0;SRF=136;SRP=298.331;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:53:41,12:41:1618:12:459:-25.6944,0,-129.9 0/1:46:35,11:35:1341:11:444:-26.4682,0,-107.102 0/1:44:34,10:34:1336:10:404:-23.4751,0,-107.259 0/1:43:26,17:26:1008:17:684:-48.945,0,-78.06 dDocent_Contig_10681 7 . A G 154.902 . AB=0.244444;ABP=28.5372;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=58;DPB=58;DPRA=1.73077;EPP=26.8965;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=355;QR=1785;RO=47;RPL=0;RPP=26.8965;RPPR=105.07;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:32:24,8:24:923:8:267:-14.7141,0,-73.7541 0/1:13:10,3:10:376:3:88:-4.29822,0,-30.277 0/0:13:13,0:13:486:0:0:0,-3.91339,-44.0831 ./.:.:.:.:.:.:.:. dDocent_Contig_10682 13 . T C 1938.17 . AB=0.523438;ABP=3.62103;AC=4;AF=0.5;AN=8;AO=67;CIGAR=1X;DP=128;DPB=128;DPRA=0;EPP=148.499;EPPR=110.694;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.791045;PAIREDR=0.852459;PAO=0;PQA=0;PQR=0;PRO=0;QA=2649;QR=2395;RO=61;RPL=0;RPP=148.499;RPPR=135.47;RPR=67;RUN=1;SAF=67;SAP=148.499;SAR=0;SRF=58;SRP=110.694;SRR=3;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:39:12,27:12:468:27:1074:-85.214,0,-30.7279 0/1:30:14,16:14:558:16:632:-48.1837,0,-41.5313 0/1:47:26,21:26:1006:21:822:-60.1493,0,-76.687 0/1:12:9,3:9:363:3:121:-7.66784,0,-29.4217 dDocent_Contig_10683 29 . A T 80.7639 . AB=0.206897;ABP=24.6501;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=96;DPB=96;DPRA=1.95238;EPP=20.3821;EPPR=194.1;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.988636;PAO=0;PQA=0;PQR=0;PRO=0;QA=282;QR=3459;RO=88;RPL=0;RPP=20.3821;RPPR=194.1;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=88;SRP=194.1;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:31:30,1:30:1190:1:40:0,-5.33625,-103.383 0/1:29:23,6:23:900:6:202:-9.77536,0,-72.5788 0/0:22:21,1:21:821:1:40:0,-2.62698,-70.2116 0/0:14:14,0:14:548:0:0:0,-4.21442,-49.6588 dDocent_Contig_10685 71 . C A 1868.12 . AB=0.653061;ABP=22.9524;AC=4;AF=0.5;AN=8;AO=64;CIGAR=1X;DP=98;DPB=98;DPRA=0;EPP=141.985;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.96875;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2471;QR=1355;RO=34;RPL=64;RPP=141.985;RPPR=76.8404;RPR=0;RUN=1;SAF=64;SAP=141.985;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:2,12:2:80:12:455:-37.0815,0,-3.37737 0/1:23:9,14:9:355:14:537:-41.7428,0,-25.3836 0/1:21:11,10:11:436:10:385:-28.6779,0,-33.2725 0/1:40:12,28:12:484:28:1094:-86.7031,0,-31.8679 dDocent_Contig_10686 106 . N T 219.352 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=7;CIGAR=2X;DP=7;DPB=7;DPRA=0;EPP=18.2106;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=9.4572;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=240;QR=0;RO=0;RPL=0;RPP=18.2106;RPPR=0;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. 1|1:7:0,7:0:0:7:240:-21.9352,-2.10721,0 .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. dDocent_Contig_10687 21 . A G 697.738 . AB=0.510204;ABP=3.05462;AC=3;AF=0.375;AN=8;AO=25;CIGAR=1X;DP=57;DPB=57;DPRA=2.04167;EPP=57.2971;EPPR=35.8538;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.78125;PAO=0;PQA=0;PQR=0;PRO=0;QA=987;QR=1293;RO=32;RPL=0;RPP=57.2971;RPPR=72.4974;RPR=25;RUN=1;SAF=0;SAP=57.2971;SAR=25;SRF=27;SRP=35.8538;SRR=5;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:4,17:4:163:17:670:-54.3045,0,-8.7368 0/1:19:13,6:13:522:6:236:-15.8907,0,-41.607 0/1:9:7,2:7:281:2:81:-4.97646,0,-22.9527 0/0:8:8,0:8:327:0:0:0,-2.40824,-29.8001 dDocent_Contig_10688 16 . A T 326.461 . AB=0.214286;ABP=52.644;AC=1;AF=0.125;AN=8;AO=26;CIGAR=1X;DP=313;DPB=313;DPRA=0;EPP=59.4686;EPPR=626.223;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=0.923077;PAIREDR=0.770035;PAO=0;PQA=0;PQR=0;PRO=0;QA=1056;QR=11551;RO=287;RPL=0;RPP=59.4686;RPPR=626.223;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=287;SRP=626.223;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:119:111,8:111:4478:8:324:0,-6.29338,-373.411 0/0:99:97,2:97:3927:2:79:0,-22.3047,-345.904 0/1:70:55,15:55:2199:15:612:-34.345,0,-177.009 0/0:25:24,1:24:947:1:41:0,-3.43118,-81.4325 dDocent_Contig_10690 17 . A C 78.2754 . AB=0.333333;ABP=5.9056;AC=2;AF=0.25;AN=8;AO=6;CIGAR=1X1M2X;DP=46;DPB=46;DPRA=0;EPP=16.0391;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1.5;MQM=55;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=233;QR=1494;RO=38;RPL=0;RPP=16.0391;RPPR=85.5263;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:16:14,1:14:547:1:40:0,-0.775684,-45.7088 0|0:18:17,1:17:672:1:39:0,-1.52712,-56.9168 0|1:8:6,1:6:235:1:39:-1.49985,0,-19.2035 0|1:4:1,3:1:40:3:115:-9.47732,0,-2.79156 dDocent_Contig_10691 22 . A T 55.8974 . AB=0.153846;ABP=30.0702;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=173;DPB=173;DPRA=0.530612;EPP=11.6962;EPPR=369.989;GTI=0;LEN=1;MEANALT=1;MQM=56.5;MQMR=59.7692;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.87574;PAO=0;PQA=0;PQR=0;PRO=0;QA=164;QR=6796;RO=169;RPL=0;RPP=11.6962;RPPR=369.989;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=169;SRP=369.989;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:40:40,0:40:1618:0:0:0,-12.0412,-145.847 0/0:65:65,0:65:2600:0:0:0,-19.5669,-234.13 0/0:42:42,0:42:1689:0:0:0,-12.6433,-150.428 0/1:26:22,4:22:889:4:164:-7.28871,0,-72.4909 dDocent_Contig_10693 11 . A T 1023.22 . AB=0.378641;ABP=16.1867;AC=3;AF=0.375;AN=8;AO=40;CIGAR=1X;DP=128;DPB=128;DPRA=0;EPP=89.8692;EPPR=194.1;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.8;PAIREDR=0.954545;PAO=0;PQA=0;PQR=0;PRO=0;QA=1570;QR=3507;RO=88;RPL=0;RPP=89.8692;RPPR=194.1;RPR=40;RUN=1;SAF=40;SAP=89.8692;SAR=0;SRF=88;SRP=194.1;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:25:24,1:24:963:1:40:0,-3.53007,-82.9769 0/1:35:27,8:27:1070:8:318:-18.4497,0,-86.0583 0/1:40:29,11:29:1168:11:426:-26.6437,0,-93.3572 0/1:28:8,20:8:306:20:786:-62.6269,0,-19.4649 dDocent_Contig_10694 12 . C T 117.983 . AB=0.464286;ABP=3.94093;AC=3;AF=0.375;AN=8;AO=39;CIGAR=1M5I1X2M2X2M1X;DP=84;DPB=105.556;DPRA=0;EPP=87.6977;EPPR=87.6977;GTI=0;LEN=1;MEANALT=2;MQM=12;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0.871795;PAO=0;PQA=0;PQR=0;PRO=0;QA=1543;QR=1557;RO=39;RPL=0;RPP=87.6977;RPPR=87.6977;RPR=39;RUN=1;SAF=39;SAP=87.6977;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:26:16,9,0:16:636:9,0:356,0:-1.93668,0,-49.6527,-6.75316,-52.362,-59.2708 0|1:10:2,8,0:2:81:8,0:320,0:-5.745,0,-4.67543,-6.34706,-7.08367,-13.0831 0|0:25:10,12,3:10:400:12,3:473,122:-7.11019,-1.01019,-30.343,0,-23.8906,-32.1742 0|1:23:11,10,0:11:440:10,0:394,0:-4.24676,0,-33.2427,-7.55809,-36.253,-43.9149 dDocent_Contig_10695 10 . A G 2367.72 . AB=0.0742857;ABP=278.489;AC=1;AF=0.125;AN=8;AO=13;CIGAR=2X3M;DP=202;DPB=202;DPRA=0;EPP=31.2394;EPPR=133.299;GTI=0;LEN=1;MEANALT=4.33333;MQM=60;MQMR=60;NS=4;NUMALT=5;ODDS=5.55112e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=500;QR=2350;RO=60;RPL=0;RPP=31.2394;RPPR=133.299;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:61:25,0,15,4,3,14:25:984:0,15,4,3,14:0,573,157,117,536:-38.6668,-46.1925,-127.145,0,-80.9524,-76.437,-33.2785,-114.232,-68.0396,-113.028,-36.8993,-117.852,-71.6597,-104.939,-116.949,-2.21377,-83.1686,-36.9778,-70.2555,-73.8757,-78.9542 0|0:66:12,4,9,4,5,32:12:464:4,9,4,5,32:159,353,159,195,1229:-97.2624,-87.9874,-124.893,-71.8474,-97.0701,-107.248,-87.7828,-113.006,-96.8656,-124.689,-85.1859,-110.408,-94.2686,-110.204,-121.791,0,-25.2212,-9.08118,-25.0163,-22.4204,-28.4756 0|0:48:18,2,5,5,0,18:18:703:2,5,5,0,18:80,200,184,0,682:-50.3731,-49.3078,-106.502,-39.3125,-90.6263,-95.6046,-40.7507,-92.062,-82.0681,-97.0401,-55.7917,-107.104,-97.1097,-98.5453,-113.587,0,-51.3113,-41.317,-42.7552,-57.7947,-52.3761 0|0:27:5,1,2,0,0,19:5:199:1,2,0,0,19:39,75,0,0,724:-57.8672,-56.2095,-72.298,-53.2301,-66.457,-69.0175,-59.3723,-72.599,-69.6196,-75.7617,-59.3723,-72.599,-69.6196,-75.7617,-75.7617,0,-13.2365,-10.2608,-16.3984,-16.3984,-10.6788 dDocent_Contig_10696 9 . G A 3082.37 . AB=0.25522;ABP=227.317;AC=4;AF=0.5;AN=8;AO=110;CIGAR=1X3M;DP=431;DPB=431;DPRA=0;EPP=241.872;EPPR=476.391;GTI=0;LEN=1;MEANALT=3;MQM=59.9364;MQMR=60;NS=4;NUMALT=3;ODDS=5.55112e-17;PAIRED=1;PAIREDR=0.995413;PAO=0;PQA=0;PQR=0;PRO=0;QA=4206;QR=8475;RO=218;RPL=0;RPP=241.872;RPPR=476.391;RPR=110;RUN=1;SAF=110;SAP=241.872;SAR=0;SRF=218;SRP=476.391;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:94:50,11,17,16:50:1956:11,17,16:432,659,647:-39.0862,-18.6068,-176.114,0,-125.284,-155.698,-0.789418,-126.079,-107.47,-156.795 0|1:126:91,16,5,14:91:3519:16,5,14:632,193,554:-24.6142,0,-284.206,-36.1586,-273.172,-323.675,-6.41582,-243.431,-279.588,-291.225 0|1:126:51,23,39,13:51:1992:23,39,13:899,1499,501:-107.706,-49.1462,-205.986,0,-89.8501,-152.021,-81.926,-171.777,-122.629,-241.775 0|1:85:26,6,49,4:26:1008:6,49,4:240,1855,159:-144.211,-132.265,-213.273,0,-63.0322,-68.0541,-139.102,-202.144,-69.8698,-220.712 dDocent_Contig_10697 11 . A G 846.856 . AB=0.354839;ABP=20.0318;AC=4;AF=0.5;AN=8;AO=33;CIGAR=1X;DP=93;DPB=93;DPRA=0;EPP=74.6689;EPPR=133.299;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1311;QR=2362;RO=60;RPL=0;RPP=74.6689;RPPR=133.299;RPR=33;RUN=1;SAF=33;SAP=74.6689;SAR=0;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:35:25,10:25:963:10:403:-26.0944,0,-76.4286 0/1:46:27,19:27:1071:19:751:-54.0599,0,-82.8299 0/1:8:7,1:7:287:1:38:-1.38903,0,-23.797 0/1:4:1,3:1:41:3:119:-9.89038,0,-2.89045 dDocent_Contig_10699 107 . N T 71.2853 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=71;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:1:0,1:0:0:1:15:-1.49999,-0.30103,0 ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:56:-5.3191,-0.60206,0 dDocent_Contig_10700 38 . G A 94.5064 . AB=0.193548;ABP=28.2974;AC=2;AF=0.25;AN=8;AO=6;CIGAR=1X;DP=77;DPB=77;DPRA=0.673913;EPP=8.80089;EPPR=157.185;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.666667;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=238;QR=2763;RO=71;RPL=2;RPP=4.45795;RPPR=157.185;RPR=4;RUN=1;SAF=5;SAP=8.80089;SAR=1;SRF=71;SRP=157.185;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:22,4:22:851:4:162:-7.14018,0,-69.0801 0/0:34:34,0:34:1342:0:0:0,-10.235,-121.045 0/0:12:12,0:12:449:0:0:0,-3.61236,-40.7494 0/1:5:3,2:3:121:2:76:-5.70839,0,-9.77505 dDocent_Contig_10701 76 . G T 60.9552 . AB=0.170732;ABP=41.6201;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X;DP=91;DPB=91;DPRA=2.5;EPP=22.5536;EPPR=181.071;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.987805;PAO=0;PQA=0;PQR=0;PRO=0;QA=287;QR=2815;RO=82;RPL=9;RPP=22.5536;RPPR=181.071;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=82;SRP=181.071;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:41:34,7:34:1180:7:217:-7.49317,0,-94.1646 0/0:17:17,0:17:581:0:0:0,-5.11751,-52.612 0/0:24:22,2:22:741:2:70:0,-0.577324,-60.3567 0/0:9:9,0:9:313:0:0:0,-2.70927,-28.507 dDocent_Contig_10703 25 . A C 1491.98 . AB=0.0625;ABP=82.8119;AC=0;AF=0;AN=8;AO=3;CIGAR=4M3X1M;DP=182;DPB=211.625;DPRA=0;EPP=9.52472;EPPR=204.957;GTI=0;LEN=1;MEANALT=4;MQM=57.6667;MQMR=60;NS=4;NUMALT=4;ODDS=2.77556e-17;PAIRED=0;PAIREDR=0.935484;PAO=0;PQA=0;PQR=0;PRO=0;QA=119;QR=3621;RO=93;RPL=0;RPP=9.52472;RPPR=204.957;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=93;SRP=204.957;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:64:14,23,22,0,5:14:542:23,22,0,5:820,857,0,130:-86.4828,-25.8424,-63.45,-20.319,0,-58.2386,-90.6972,-70.3737,-64.8612,-135.226,-81.8683,-61.5503,-56.0343,-126.395,-124.89 0|0:34:30,4,0,0,0:30:1172:4,0,0,0:148,0,0,0:-3.43751,0,-95.5371,-12.4684,-96.7412,-108.838,-12.4684,-96.7412,-108.838,-108.838,-12.4684,-96.7412,-108.838,-108.838,-108.838 0|0:48:32,11,0,3,0:32:1248:11,0,3,0:346,0,119,0:-16.4859,0,-99.3191,-26.1189,-102.63,-128.756,-16.313,-92.8432,-118.968,-118.065,-26.1189,-102.63,-128.756,-118.968,-128.756 0|0:36:17,19,0,0,0:17:659:19,0,0,0:685,0,0,0:-50.1854,0,-48.8043,-55.303,-54.5238,-109.455,-55.303,-54.5238,-109.455,-109.455,-55.303,-54.5238,-109.455,-109.455,-109.455 dDocent_Contig_10704 62 . C A 347.331 . AB=0.259259;ABP=43.7857;AC=4;AF=0.5;AN=8;AO=21;CIGAR=1X;DP=81;DPB=81;DPRA=0;EPP=48.6112;EPPR=133.299;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.2333;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.85;PAO=0;PQA=0;PQR=0;PRO=0;QA=724;QR=2212;RO=60;RPL=0;RPP=48.6112;RPPR=3.15506;RPR=21;RUN=1;SAF=0;SAP=48.6112;SAR=21;SRF=31;SRP=3.15506;SRR=29;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:15,4:15:553:4:133:-6.57907,0,-44.386 0/1:6:3,3:3:113:3:105:-7.98998,0,-8.73279 0/1:20:17,3:17:636:3:104:-3.68249,0,-50.5727 0/1:36:25,11:25:910:11:382:-23.8773,0,-71.3767 dDocent_Contig_10705 199 . T A 109.397 . AB=0.205882;ABP=28.557;AC=3;AF=0.375;AN=8;AO=7;CIGAR=1X;DP=42;DPB=42;DPRA=1.41667;EPP=18.2106;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=273;QR=1321;RO=35;RPL=7;RPP=18.2106;RPPR=79.0118;RPR=0;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=79.0118;SRR=35;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:14,2:14:507:2:78:-2.58699,0,-41.1434 0/1:9:5,4:5:195:4:156:-11.708,0,-15.2149 0/1:9:8,1:8:311:1:39:-1.18729,0,-25.645 0/0:8:8,0:8:308:0:0:0,-2.40824,-28.0825 dDocent_Contig_10706 22 . T C 573.732 . AB=0.228814;ABP=78.3862;AC=4;AF=0.5;AN=8;AO=27;CIGAR=1X4M;DP=118;DPB=118;DPRA=0;EPP=61.6401;EPPR=191.928;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1076;QR=3459;RO=87;RPL=0;RPP=61.6401;RPPR=191.928;RPR=27;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=87;SRP=191.928;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:60:43,0,17:43:1716:0,17:0,674:-42.9255,-55.8698,-197.199,0,-141.726,-136.608 0|1:38:27,3,7:27:1067:3,7:105,282:-15.1617,-14.7578,-101.664,0,-79.321,-85.7514 0|1:10:9,0,1:9:357:0,1:0,39:-0.886264,-3.59553,-32.9885,0,-29.7833,-29.4823 0|1:10:8,0,2:8:319:0,2:0,81:-4.67543,-7.08367,-33.35,0,-26.6696,-26.0675 dDocent_Contig_10707 136 . C A 99.7248 . AB=0.230769;ABP=19.3799;AC=2;AF=0.25;AN=8;AO=8;CIGAR=1X;DP=72;DPB=72;DPRA=1.51282;EPP=20.3821;EPPR=141.985;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.75;PAIREDR=0.9375;PAO=0;PQA=0;PQR=0;PRO=0;QA=283;QR=2261;RO=64;RPL=0;RPP=20.3821;RPPR=141.985;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=141.985;SRR=64;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:13:13,0:13:455:0:0:0,-3.91339,-41.2817 0/0:33:31,2:31:1092:2:72:0,-3.09727,-91.7512 0/1:15:10,5:10:357:5:176:-11.6698,0,-27.9568 0/1:11:10,1:10:357:1:35:-0.187299,0,-29.1603 dDocent_Contig_10708 14 . C G 116.664 . AB=0.206897;ABP=24.6501;AC=1;AF=0.125;AN=8;AO=11;CIGAR=1X;DP=117;DPB=117;DPRA=2.26667;EPP=26.8965;EPPR=233.186;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=438;QR=4216;RO=106;RPL=0;RPP=26.8965;RPPR=233.186;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=106;SRP=233.186;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:23,6:23:901:6:238:-13.0634,0,-72.661 0/0:49:45,4:45:1779:4:159:0,-0.0585147,-145.63 0/0:24:23,1:23:934:1:41:0,-3.13015,-80.2652 0/0:15:15,0:15:602:0:0:0,-4.51545,-54.5177 dDocent_Contig_10709 209 . N G 119.89 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=121;QR=0;RO=0;RPL=3;RPP=9.52472;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:80:-7.59179,-0.60206,0 1/1:1:0,1:0:0:1:41:-4.09457,-0.30103,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_10710 61 . G A 32.1996 . AB=0.285714;ABP=5.80219;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=76;DPB=76;DPRA=0.688889;EPP=9.52472;EPPR=161.528;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=111;QR=2657;RO=73;RPL=3;RPP=9.52472;RPPR=161.528;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=73;SRP=161.528;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:24:23,1:23:842:1:37:0,-3.52689,-72.4018 0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.912 0/0:16:16,0:16:584:0:0:0,-4.81648,-52.8946 0/1:7:5,2:5:191:2:74:-4.91867,0,-15.4513 dDocent_Contig_10711 19 . G A 39.4484 . AB=0.128205;ABP=49.8362;AC=2;AF=0.25;AN=8;AO=5;CIGAR=1X;DP=62;DPB=62;DPRA=1.69565;EPP=13.8677;EPPR=126.784;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.982456;PAO=0;PQA=0;PQR=0;PRO=0;QA=203;QR=2292;RO=57;RPL=0;RPP=13.8677;RPPR=126.784;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:13:13,0:13:523:0:0:0,-3.91339,-47.4172 0/1:17:15,2:15:602:2:82:-2.66217,0,-49.4014 0/1:22:19,3:19:777:3:121:-4.65733,0,-63.6249 0/0:10:10,0:10:390:0:0:0,-3.0103,-35.4506 dDocent_Contig_10712 98 . N T 218.645 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=7;CIGAR=1X;DP=7;DPB=7;DPRA=0;EPP=18.2106;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=227;QR=0;RO=0;RPL=7;RPP=18.2106;RPPR=0;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:91:-8.49066,-0.90309,0 1/1:3:0,3:0:0:3:105:-9.79609,-0.90309,0 ./.:.:.:.:.:.:.:. 1/1:1:0,1:0:0:1:31:-3.09945,-0.30103,0 dDocent_Contig_10713 16 . C T 7346.3 . AB=0.0320856;ABP=358.632;AC=1;AF=0.125;AN=8;AO=12;CIGAR=2M1D1M1X6M;DP=307;DPB=280.727;DPRA=0;EPP=29.068;EPPR=81.1833;GTI=0;LEN=1;MEANALT=4.5;MQM=46.25;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=478;QR=1420;RO=36;RPL=0;RPP=29.068;RPPR=81.1833;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:120:6,6,6,101:6:229:6,6,101:238,220,3897:-329.655,-312.301,-329.28,-313.971,-313.595,-330.95,-11.6166,-11.2384,-12.9211,0 0|0:115:23,1,1,84:23:912:1,1,84:41,38,3203:-255.778,-259.4,-334.173,-259.612,-331.385,-334.386,0,-71.8005,-72.0136,-49.8159 0|0:58:7,3,9,38:7:279:3,9,38:118,342,1440:-120.459,-113.262,-135.338,-94.8561,-108.532,-115.127,-4.722,-18.4079,0,-16.2739 1|0:14:0,2,1,9:0:0:2,1,9:81,39,339:-34.1353,-27.6036,-27.0015,-30.9632,-24.4312,-30.6622,-6.5304,0,-3.36083,-3.82113 dDocent_Contig_10714 39 . G C 1904.62 . AB=0.571429;ABP=7.97367;AC=4;AF=0.5;AN=8;AO=64;CIGAR=1X;DP=112;DPB=112;DPRA=0;EPP=141.985;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2558;QR=1916;RO=48;RPL=0;RPP=141.985;RPPR=107.241;RPR=64;RUN=1;SAF=64;SAP=141.985;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:20,16:20:796:16:626:-45.8323,0,-61.1194 0/1:51:20,31:20:797:31:1249:-97.3246,0,-56.692 0/1:20:7,13:7:282:13:522:-41.3057,0,-19.732 0/1:5:1,4:1:41:4:161:-13.3701,0,-2.58942 dDocent_Contig_10715 108 . G A 614.366 . AB=0.609756;ABP=7.30028;AC=1;AF=0.125;AN=8;AO=26;CIGAR=1X;DP=101;DPB=101;DPRA=1.525;EPP=59.4686;EPPR=165.871;GTI=0;LEN=1;MEANALT=1;MQM=40;MQMR=40;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=896;QR=2577;RO=75;RPL=0;RPP=59.4686;RPPR=165.871;RPR=26;RUN=1;SAF=0;SAP=59.4686;SAR=26;SRF=0;SRP=165.871;SRR=75;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:35:35,0:35:1186:0:0:0,-10.536,-103.607 0/1:41:16,25:16:556:25:862:-63.1355,0,-36.3952 0/0:20:19,1:19:660:1:34:0,-2.71789,-54.4828 0/0:5:5,0:5:175:0:0:0,-1.50515,-15.5512 dDocent_Contig_10716 73 . A G 440.729 . AB=0.342466;ABP=18.746;AC=4;AF=0.5;AN=8;AO=25;CIGAR=1X;DP=73;DPB=73;DPRA=0;EPP=57.2971;EPPR=105.07;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=802;QR=1583;RO=47;RPL=25;RPP=57.2971;RPPR=105.07;RPR=0;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:34:28,5:28:941:5:166:-5.0365,0,-74.7723 0/1:23:9,14:9:297:14:442:-33.1625,0,-20.1283 0/1:4:2,2:2:69:2:59:-4.4001,0,-5.34854 0/1:12:8,4:8:276:4:135:-8.87122,0,-21.5637 dDocent_Contig_10717 26 . G T 258.094 . AB=0.34375;ABP=9.79615;AC=3;AF=0.375;AN=8;AO=11;CIGAR=1X;DP=45;DPB=45;DPRA=0.820513;EPP=26.8965;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=441;QR=1371;RO=34;RPL=0;RPP=26.8965;RPPR=76.8404;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:13:13,0:13:525:0:0:0,-3.91339,-47.5967 0/1:8:5,3:5:203:3:117:-8.50167,0,-16.2448 0/1:18:12,6:12:482:6:244:-16.9203,0,-38.3132 0/1:6:4,2:4:161:2:80:-5.78539,0,-13.0691 dDocent_Contig_10718 22 . A G 1387.63 . AB=0.556818;ABP=5.47788;AC=4;AF=0.5;AN=8;AO=49;CIGAR=1X;DP=88;DPB=88;DPRA=0;EPP=109.412;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1903;QR=1532;RO=39;RPL=0;RPP=109.412;RPPR=87.6977;RPR=49;RUN=1;SAF=49;SAP=109.412;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:8,17:8:304:17:637:-50.1256,0,-20.1861 0/1:30:13,17:13:510:17:679:-52.4094,0,-37.2148 0/1:23:13,10:13:516:10:388:-28.3486,0,-39.8625 0/1:10:5,5:5:202:5:199:-15.2771,0,-15.5512 dDocent_Contig_10719 116 . A G 52.9499 . AB=0.333333;ABP=5.18177;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=124;DPB=124;DPRA=0.797101;EPP=18.2106;EPPR=257.073;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=244;QR=4035;RO=117;RPL=0;RPP=18.2106;RPPR=257.073;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=257.073;SRR=117;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:46:42,4:42:1461:4:140:0,-0.902451,-118.834 0/0:48:48,0:48:1678:0:0:0,-14.4494,-151.306 0/0:21:21,0:21:701:0:0:0,-6.32163,-63.3984 0/1:9:6,3:6:195:3:104:-6.99382,0,-15.1587 dDocent_Contig_10720 9 . C T 239.896 . AB=0.197183;ABP=59.5603;AC=3;AF=0.375;AN=8;AO=14;CIGAR=1X;DP=86;DPB=86;DPRA=1.57778;EPP=33.4109;EPPR=159.356;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=538;QR=2732;RO=72;RPL=0;RPP=33.4109;RPPR=159.356;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=72;SRP=159.356;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:12,8:12:457:8:308:-22.0616,0,-35.4585 0/1:29:25,4:25:926:4:152:-5.31933,0,-74.9144 0/1:22:20,2:20:769:2:78:-0.780813,0,-62.916 0/0:15:15,0:15:580:0:0:0,-4.51545,-52.5429 dDocent_Contig_10721 25 . C T 643.099 . AB=0.329412;ABP=24.4951;AC=3;AF=0.375;AN=8;AO=28;CIGAR=1X;DP=89;DPB=89;DPRA=7.08333;EPP=63.8115;EPPR=135.47;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1047;QR=2394;RO=61;RPL=0;RPP=63.8115;RPPR=135.47;RPR=28;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=61;SRP=135.47;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:4:4,0:4:161:0:0:0,-1.20412,-14.8749 0/1:36:26,10:26:1036:10:357:-21.6243,0,-82.6955 0/1:37:21,16:21:832:16:609:-44.0092,0,-64.0589 0/1:12:10,2:10:365:2:81:-4.07337,0,-29.5658 dDocent_Contig_10723 75 . A T 78.8509 . AB=0.307692;ABP=7.18621;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=84;DPB=84;DPRA=0.549296;EPP=11.6962;EPPR=176.728;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.975;PAO=0;PQA=0;PQR=0;PRO=0;QA=146;QR=2945;RO=80;RPL=4;RPP=11.6962;RPPR=176.728;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=80;SRP=176.728;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:12:12,0:12:420:0:0:0,-3.61236,-38.1308 0/1:13:9,4:9:336:4:146:-9.58406,0,-26.678 0/0:42:42,0:42:1570:0:0:0,-12.6433,-141.567 0/0:17:17,0:17:619:0:0:0,-5.11751,-56.0441 dDocent_Contig_10724 9 . C T 1020.29 . AB=0.303448;ABP=51.6663;AC=4;AF=0.5;AN=8;AO=44;CIGAR=1X;DP=145;DPB=145;DPRA=0;EPP=98.5551;EPPR=222.329;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1676;QR=3907;RO=101;RPL=0;RPP=98.5551;RPPR=222.329;RPR=44;RUN=1;SAF=44;SAP=98.5551;SAR=0;SRF=101;SRP=222.329;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:49:19,30:19:737:30:1146:-88.6882,0,-51.9109 0/1:62:52,10:52:2009:10:376:-15.5261,0,-162.379 0/1:20:18,2:18:695:2:76:-1.19407,0,-56.8637 0/1:14:12,2:12:466:2:78:-3.18905,0,-38.0776 dDocent_Contig_10725 11 . C A 64.5449 . AB=0.272727;ABP=7.94546;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=56;DPB=56;DPRA=0.733333;EPP=9.52472;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=123;QR=2111;RO=53;RPL=0;RPP=9.52472;RPPR=118.098;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:20:20,0:20:801:0:0:0,-6.0206,-72.4019 0/1:11:8,3:8:327:3:123:-8.15346,0,-26.4888 0/0:15:15,0:15:601:0:0:0,-4.51545,-54.4287 0/0:10:10,0:10:382:0:0:0,-3.0103,-34.7221 dDocent_Contig_10726 14 . A T 33.9934 . AB=0.157895;ABP=22.325;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=111;DPB=111;DPRA=0.619565;EPP=9.52472;EPPR=237.529;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=116;QR=4233;RO=108;RPL=0;RPP=9.52472;RPPR=237.529;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=108;SRP=237.529;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:29:29,0:29:1139:0:0:0,-8.72987,-102.801 0/0:25:25,0:25:976:0:0:0,-7.52575,-88.1409 0/0:38:38,0:38:1469:0:0:0,-11.4391,-132.464 0/1:19:16,3:16:649:3:116:-5.09813,0,-53.0241 dDocent_Contig_10727 17 . G T 336.004 . AB=0.0385852;ABP=578.129;AC=0;AF=0;AN=8;AO=13;CIGAR=1X2M1X;DP=548;DPB=548;DPRA=0;EPP=31.2394;EPPR=964.973;GTI=0;LEN=1;MEANALT=4.66667;MQM=60;MQMR=60;NS=4;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=0.889391;PAO=0;PQA=0;PQR=0;PRO=0;QA=518;QR=17297;RO=443;RPL=0;RPP=31.2394;RPPR=964.973;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=443;SRP=964.973;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:156:114,10,16,0,8:114:4431:10,16,0,8:398,639,0,320:-18.3141,-19.8596,-380.916,0,-331.295,-359.251,-52.6315,-383.927,-364.067,-416.699,-26.2721,-357.567,-337.708,-390.34,-387.932 0|0:155:126,2,17,2,7:126:4901:2,17,2,7:79,684,82,280:-18.4408,-49.8701,-451.971,0,-396.202,-397.586,-49.6018,-445.805,-395.935,-451.704,-33.3064,-429.508,-379.638,-429.241,-433.902 0|0:157:139,1,8,0,6:139:5438:1,8,0,6:41,322,0,220:0,-38.458,-485.236,-15.2963,-458.998,-459.974,-41.8432,-485.537,-462.382,-488.921,-23.882,-467.564,-444.41,-470.949,-469.142 0|0:80:64,0,3,6,7:64:2527:0,3,6,7:0,119,226,262:-2.17651,-21.4424,-229.379,-11.6426,-219.583,-218.68,-2.92554,-210.862,-201.066,-209.055,0,-207.934,-198.138,-189.417,-205.827 dDocent_Contig_10728 24 . G T 369.984 . AB=0.137931;ABP=36.0317;AC=2;AF=0.25;AN=8;AO=5;CIGAR=1X1M1X;DP=99;DPB=99;DPRA=4;EPP=13.8677;EPPR=168.042;GTI=0;LEN=1;MEANALT=1.5;MQM=56.6;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=202;QR=2972;RO=76;RPL=0;RPP=13.8677;RPPR=168.042;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=76;SRP=168.042;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:29:18,7,4:18:714:7,4:281,163:-17.7353,0,-56.6571,-9.89251,-45.5023,-67.4538 0|0:19:18,0,1:18:720:0,1:0,39:0,-5.41854,-64.7378,-1.82301,-61.5325,-61.2314 0|1:45:34,10,0:34:1297:10,0:398,0:-22.661,0,-103.495,-32.896,-106.505,-139.281 0|0:6:6,0,0:6:241:0,0:0,0:0,-1.80618,-22.0669,-1.80618,-22.0669,-22.0669 dDocent_Contig_10729 34 . T A 6105.19 . AB=0.615854;ABP=41.2494;AC=4;AF=0.5;AN=8;AO=202;CIGAR=1X;DP=328;DPB=328;DPRA=0;EPP=441.648;EPPR=276.616;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.89604;PAIREDR=0.984127;PAO=0;PQA=0;PQR=0;PRO=0;QA=7954;QR=4969;RO=126;RPL=0;RPP=441.648;RPPR=276.616;RPR=202;RUN=1;SAF=202;SAP=441.648;SAR=0;SRF=126;SRP=276.616;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:121:49,72:49:1935:72:2823:-217.77,0,-137.926 0/1:87:28,59:28:1095:59:2321:-182.87,0,-72.651 0/1:82:27,55:27:1076:55:2192:-172.77,0,-72.4396 0/1:38:22,16:22:863:16:618:-44.5069,0,-66.5413 dDocent_Contig_10730 154 . C T 743.897 . AB=0.415385;ABP=7.05258;AC=2;AF=0.25;AN=8;AO=27;CIGAR=1X;DP=107;DPB=107;DPRA=1.54762;EPP=61.6401;EPPR=176.728;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1074;QR=3167;RO=80;RPL=0;RPP=61.6401;RPPR=176.728;RPR=27;RUN=1;SAF=0;SAP=61.6401;SAR=27;SRF=0;SRP=176.728;SRR=80;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:28:28,0:28:1096:0:0:0,-8.42884,-98.9186 0/1:37:16,21:16:635:21:829:-63.7871,0,-46.3445 0/0:14:14,0:14:565:0:0:0,-4.21442,-51.1929 0/1:28:22,6:22:871:6:245:-14.0006,0,-70.2713 dDocent_Contig_10731 153 . A C 345.917 . AB=0.271186;ABP=29.8409;AC=3;AF=0.375;AN=8;AO=16;CIGAR=1X;DP=72;DPB=72;DPRA=1.51282;EPP=37.7539;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=629;QR=2239;RO=56;RPL=0;RPP=37.7539;RPPR=124.613;RPR=16;RUN=1;SAF=0;SAP=37.7539;SAR=16;SRF=0;SRP=124.613;SRR=56;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:40:29,11:29:1144:11:430:-27.0084,0,-91.2026 0/1:3:2,1:2:82:1:41:-3.19148,0,-6.87659 0/0:13:13,0:13:526:0:0:0,-3.91339,-47.6876 0/1:16:12,4:12:487:4:158:-9.78288,0,-39.365 dDocent_Contig_10732 8 . A G 96.6628 . AB=0.217391;ABP=18.9659;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X3M1X;DP=128;DPB=128;DPRA=0.657143;EPP=13.8677;EPPR=270.101;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=199;QR=4801;RO=123;RPL=0;RPP=13.8677;RPPR=270.101;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=123;SRP=270.101;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:28:28,0:28:1092:0:0:0,-8.42884,-98.5774 0|0:55:55,0:55:2140:0:0:0,-16.5566,-192.814 0|0:22:22,0:22:854:0:0:0,-6.62266,-77.178 0|1:23:18,5:18:715:5:199:-11.3652,0,-57.7571 dDocent_Contig_10733 12 . A C 76.3162 . AB=0.139535;ABP=51.5402;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=117;DPB=117;DPRA=2.16216;EPP=20.3821;EPPR=239.701;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.899083;PAO=0;PQA=0;PQR=0;PRO=0;QA=322;QR=4369;RO=109;RPL=0;RPP=20.3821;RPPR=239.701;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=109;SRP=239.701;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:43:37,6:37:1490:6:240:-9.02955,0,-121.399 0/0:28:28,0:28:1126:0:0:0,-8.42884,-101.625 0/0:37:35,2:35:1390:2:82:0,-3.35843,-117.575 0/0:9:9,0:9:363:0:0:0,-2.70927,-33.0343 dDocent_Contig_10734 79 . C T 130.272 . AB=0.176471;ABP=49.3776;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X;DP=74;DPB=74;DPRA=6.65217;EPP=22.5536;EPPR=144.156;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=327;QR=2402;RO=65;RPL=9;RPP=22.5536;RPPR=144.156;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=65;SRP=144.156;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:51:42,9:42:1551:9:327:-14.425,0,-124.526 0/0:13:13,0:13:481:0:0:0,-3.91339,-43.6344 0/0:7:7,0:7:259:0:0:0,-2.10721,-23.6661 0/0:3:3,0:3:111:0:0:0,-0.90309,-10.3539 dDocent_Contig_10735 11 . G T 31.8362 . AB=0.222222;ABP=9.04217;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=84;DPB=84;DPRA=0.527273;EPP=9.52472;EPPR=178.9;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=90;QR=3184;RO=81;RPL=0;RPP=9.52472;RPPR=178.9;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=81;SRP=178.9;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:16:16,0:16:622:0:0:0,-4.81648,-56.3095 0/0:39:39,0:39:1540:0:0:0,-11.7402,-138.842 0/0:20:19,1:19:771:1:10:0,-5.0206,-68.7098 0/1:9:7,2:7:251:2:80:-4.8823,0,-20.2172 dDocent_Contig_10736 164 . C T 221.382 . AB=0.243902;ABP=26.3669;AC=1;AF=0.125;AN=8;AO=10;CIGAR=1X;DP=68;DPB=68;DPRA=4.55556;EPP=24.725;EPPR=128.956;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=398;QR=2228;RO=58;RPL=10;RPP=24.725;RPPR=128.956;RPR=0;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=128.956;SRR=58;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:11,0:11:442:0:0:0,-3.31133,-40.1358 0/1:41:31,10:31:1165:10:398:-23.8371,0,-92.7739 0/0:7:7,0:7:272:0:0:0,-2.10721,-24.8406 0/0:9:9,0:9:349:0:0:0,-2.70927,-31.7678 dDocent_Contig_10738 121 . G A 168.263 . AB=0.347826;ABP=7.63648;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=66;DPB=66;DPRA=1.60465;EPP=20.3821;EPPR=128.956;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=279;QR=2033;RO=58;RPL=0;RPP=20.3821;RPPR=128.956;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=128.956;SRR=58;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:12:12,0:12:427:0:0:0,-3.61236,-38.7686 0/0:9:9,0:9:305:0:0:0,-2.70927,-27.779 0/0:22:22,0:22:775:0:0:0,-6.62266,-70.0727 0/1:23:15,8:15:526:8:279:-18.5253,0,-40.7476 dDocent_Contig_10740 209 . N G 109.104 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=117;QR=0;RO=0;RPL=3;RPP=9.52472;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:117:-10.9098,-0.90309,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_10742 11 . C A 313.366 . AB=0.0555556;ABP=64.7766;AC=0;AF=0;AN=8;AO=2;CIGAR=1X1M1X;DP=113;DPB=113;DPRA=1.28571;EPP=7.35324;EPPR=187.585;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=4;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=0.929412;PAO=0;PQA=0;PQR=0;PRO=0;QA=79;QR=3249;RO=85;RPL=0;RPP=7.35324;RPPR=187.585;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=85;SRP=187.585;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:35:30,0,0,0,4:30:1148:0,0,0,4:0,0,0,155:-3.71716,-12.7481,-106.946,-12.7481,-106.946,-106.946,-12.7481,-106.946,-106.946,-106.946,0,-94.2111,-94.2111,-94.2111,-93.0069 0|0:36:18,2,4,2,10:18:699:2,4,2,10:79,155,68,384:-26.1068,-25.0227,-81.8587,-18.7894,-69.7261,-75.0237,-26.016,-76.9489,-70.7162,-82.8483,0,-50.939,-44.7062,-51.93,-54.4305 0|0:28:28,0,0,0,0:28:1062:0,0,0,0:0,0,0,0:0,-8.42884,-95.8736,-8.42884,-95.8736,-95.8736,-8.42884,-95.8736,-95.8736,-95.8736,-8.42884,-95.8736,-95.8736,-95.8736,-95.8736 0|0:14:9,0,2,0,3:9:340:0,2,0,3:0,78,0,117:-6.90836,-9.61763,-37.4729,-3.20588,-31.0598,-30.4578,-9.61763,-37.4729,-31.0598,-37.4729,0,-27.8531,-21.4392,-27.8531,-26.95 dDocent_Contig_10744 53 . T C 176.086 . AB=0.318182;ABP=9.32731;AC=2;AF=0.25;AN=8;AO=7;CIGAR=1X2M;DP=79;DPB=79;DPRA=1.25714;EPP=18.2106;EPPR=150.67;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=280;QR=2644;RO=68;RPL=7;RPP=18.2106;RPPR=150.67;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=68;SRP=150.67;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:22:14,0,7:14:547:0,7:0,280:-18.9989,-23.2134,-68.1887,0,-45.1174,-43.0102 0|0:29:28,1,0:28:1091:1,0:41,0:0,-4.6353,-94.3879,-8.42884,-94.689,-98.0737 0|1:22:20,2,0:20:778:2,0:79,0:-0.844256,0,-63.7174,-6.86486,-64.3195,-70.7917 0|0:6:6,0,0:6:228:0,0:0,0:0,-1.80618,-20.8826,-1.80618,-20.8826,-20.8826 dDocent_Contig_10745 44 . A C 263.384 . AB=0.5625;ABP=3.55317;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X;DP=58;DPB=58;DPRA=1.14286;EPP=22.5536;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.979592;PAO=0;PQA=0;PQR=0;PRO=0;QA=361;QR=1948;RO=49;RPL=0;RPP=22.5536;RPPR=109.412;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:9:9,0:9:366:0:0:0,-2.70927,-33.3052 0/0:15:15,0:15:606:0:0:0,-4.51545,-54.878 0/0:18:18,0:18:709:0:0:0,-5.41854,-64.1377 0/1:16:7,9:7:267:9:361:-28.0374,0,-19.57 dDocent_Contig_10746 9 . C T 309.67 . AB=0.2;ABP=73.366;AC=2;AF=0.25;AN=8;AO=18;CIGAR=1X;DP=123;DPB=123;DPRA=2.72727;EPP=42.0968;EPPR=213.974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.9429;NS=4;NUMALT=1;ODDS=0;PAIRED=0.777778;PAIREDR=0.72381;PAO=0;PQA=0;PQR=0;PRO=0;QA=675;QR=4019;RO=105;RPL=0;RPP=42.0968;RPPR=231.015;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=103;SRP=213.974;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:59:47,12:47:1813:12:445:-22.6306,0,-145.651 0/1:31:25,6:25:964:6:230:-11.7344,0,-77.7425 0/0:13:13,0:13:472:0:0:0,-3.91339,-42.8087 0/0:20:20,0:20:770:0:0:0,-6.0206,-69.6282 dDocent_Contig_10747 8 . A G 261.131 . AB=0.166667;ABP=107.241;AC=3;AF=0.375;AN=8;AO=18;CIGAR=1X;DP=118;DPB=118;DPRA=3.6;EPP=42.0968;EPPR=211.559;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=54.18;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.84;PAO=0;PQA=0;PQR=0;PRO=0;QA=699;QR=3827;RO=100;RPL=0;RPP=42.0968;RPPR=220.158;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=99;SRP=211.559;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:52:42,10:42:1598:10:388:-19.6243,0,-128.421 0/1:45:39,6:39:1500:6:233:-7.79373,0,-105.653 0/1:11:9,2:9:348:2:78:-4.09214,0,-24.9913 0/0:10:10,0:10:381:0:0:0,-3.0103,-29.1819 dDocent_Contig_10748 40 . G T 1219.19 . AB=0.459184;ABP=4.4284;AC=4;AF=0.5;AN=8;AO=45;CIGAR=1X;DP=98;DPB=98;DPRA=0;EPP=100.727;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.6;PAIREDR=0.603774;PAO=0;PQA=0;PQR=0;PRO=0;QA=1749;QR=2088;RO=53;RPL=0;RPP=100.727;RPPR=118.098;RPR=45;RUN=1;SAF=45;SAP=100.727;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:19,6:19:734:6:239:-14.3581,0,-58.8461 0/1:17:10,7:10:401:7:286:-20.9973,0,-31.3324 0/1:39:14,25:14:564:25:949:-73.9607,0,-39.3621 0/1:17:10,7:10:389:7:275:-20.0005,0,-30.2443 dDocent_Contig_10749 28 . C T 758.072 . AB=0.0666667;ABP=51.9408;AC=0;AF=0;AN=8;AO=2;CIGAR=1M1X1M1D5M;DP=92;DPB=87.4444;DPRA=0;EPP=7.35324;EPPR=61.6401;GTI=0;LEN=1;MEANALT=5;MQM=51;MQMR=60;NS=4;NUMALT=6;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=77;QR=1064;RO=27;RPL=0;RPP=7.35324;RPPR=61.6401;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:35:10,0,4,6,4,7,4:10:394:0,4,6,4,7,4:0,156,234,156,280,158:-20.0573,-23.0676,-55.483,-10.245,-42.6601,-41.456,-3.83434,-36.2494,-23.4267,-34.4432,-10.245,-42.6601,-29.8374,-23.4267,-41.456,0,-32.4163,-19.5933,-13.1825,-19.5933,-30.3091,-10.0674,-42.4829,-29.66,-23.2493,-29.66,-19.4159,-41.2788 0|0:30:8,2,0,2,1,10,7:8:317:2,0,2,1,10,7:77,0,80,40,394,275:-30.0062,-26.1369,-51.6281,-32.4144,-52.2301,-58.5078,-25.8236,-45.6396,-51.9172,-51.3152,-29.119,-48.9349,-55.2125,-48.6219,-54.9115,0,-19.8168,-26.094,-19.5032,-22.7986,-23.0837,-9.79776,-29.6139,-35.8913,-29.3006,-32.596,-3.47785,-33.7841 0|0:17:3,0,0,6,6,1,1:3:115:0,0,6,6,1,1:0,0,240,228,40,41:-28.1262,-29.0293,-38.4661,-29.0293,-38.4661,-38.4661,-9.25316,-18.6908,-18.6908,-16.8846,-10.3411,-19.7746,-19.7746,0,-17.9684,-25.7336,-35.1705,-35.1705,-15.3942,-16.4792,-34.8694,-25.6439,-35.0809,-35.0809,-15.3042,-16.3892,-31.7851,-34.7798 0|0:10:6,0,0,0,2,0,2:6:238:0,0,0,2,0,2:0,0,0,78,0,82:-4.97189,-6.77807,-26.3682,-6.77807,-26.3682,-26.3682,-6.77807,-26.3682,-26.3682,-26.3682,-0.376377,-19.9586,-19.9586,-19.9586,-19.3565,-6.77807,-26.3682,-26.3682,-26.3682,-19.9586,-26.3682,0,-19.597,-19.597,-19.597,-13.1871,-19.597,-18.995 dDocent_Contig_10750 9 . C T 1270.07 . AB=0.0816327;ABP=77.5051;AC=0;AF=0;AN=8;AO=4;CIGAR=2X1M1X;DP=121;DPB=121;DPRA=0;EPP=11.6962;EPPR=120.27;GTI=0;LEN=1;MEANALT=2.5;MQM=40;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=0.759259;PAO=0;PQA=0;PQR=0;PRO=0;QA=160;QR=2123;RO=54;RPL=0;RPP=11.6962;RPPR=120.27;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:34:11,16,0,7:11:433:16,0,7:641,0,267:-42.0528,0,-30.8296,-45.3641,-35.6461,-80.9988,-25.3365,-15.6356,-60.9752,-58.868 0|0:38:22,14,0,2:22:869:14,0,2:557,0,80:-34.182,0,-67.3185,-40.8046,-71.5329,-112.336,-34.7469,-65.4788,-106.28,-105.678 0|0:33:19,13,1,0:19:741:13,1,0:501,40,0:-32.1546,0,-57.0117,-34.8452,-57.898,-95.4697,-37.8742,-60.9251,-95.7708,-98.7986 0|0:16:2,4,3,7:2:80:4,3,7:162,120,272:-26.0156,-14.1494,-19.5412,-17.5333,-11.6614,-23.2251,-5.86765,0,-3.38444,-10.356 dDocent_Contig_10751 9 . C T 951.671 . AB=0.538462;ABP=3.84548;AC=4;AF=0.5;AN=8;AO=35;CIGAR=1X;DP=65;DPB=65;DPRA=0;EPP=79.0118;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1341;QR=1162;RO=30;RPL=0;RPP=79.0118;RPPR=68.1545;RPR=35;RUN=1;SAF=35;SAP=79.0118;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:10,16:10:388:16:605:-46.9598,0,-27.4512 0/1:15:9,6:9:347:6:233:-16.8246,0,-27.0742 0/1:10:4,6:4:155:6:232:-18.2386,0,-11.3151 0/1:14:7,7:7:272:7:271:-20.5419,0,-20.6328 dDocent_Contig_10752 129 . C A 3162.79 . AB=0.167147;ABP=336.935;AC=1;AF=0.125;AN=8;AO=58;CIGAR=1M3D1X1M;DP=347;DPB=236;DPRA=0;EPP=128.956;EPPR=267.93;GTI=0;LEN=1;MEANALT=4.25;MQM=38.6897;MQMR=59.1967;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1956;QR=4012;RO=122;RPL=0;RPP=128.956;RPPR=267.93;RPR=58;RUN=1;SAF=0;SAP=128.956;SAR=58;SRF=0;SRP=267.93;SRR=122;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:82:25,26,19,12:25:844:26,19,12:903,646,409:-63.2371,0,-60.5842,-20.3589,-18.0075,-83.0483,-37.9566,-35.6049,-55.9624,-102.754 0|0:104:33,5,2,61:33:1067:5,2,61:170,63,1984:-136.201,-132.793,-216.74,-141.184,-213.294,-226.032,0,-72.1524,-80.5438,-67.1317 0|0:103:41,20,6,36:41:1373:20,6,36:659,216,1191:-78.6076,-40.1035,-144.75,-74.0988,-133.921,-182.96,0,-59.825,-93.8169,-99.8295 0|0:58:23,7,19,7:23:728:7,19,7:224,672,233:-45.6313,-35.3954,-91.8602,0,-41.4231,-52.8664,-34.1773,-75.5899,-40.2057,-90.6443 dDocent_Contig_10754 8 . A G 11973.8 . AB=0.739526;ABP=276.596;AC=4;AF=0.5;AN=8;AO=406;CIGAR=1X;DP=549;DPB=549;DPRA=0;EPP=884.628;EPPR=298.331;GTI=0;LEN=1;MEANALT=1.75;MQM=58.83;MQMR=52.8382;NS=4;NUMALT=1;ODDS=2.77556e-17;PAIRED=0.763547;PAIREDR=0.705882;PAO=0;PQA=0;PQR=0;PRO=0;QA=15408;QR=5186;RO=136;RPL=0;RPP=884.628;RPPR=298.331;RPR=406;RUN=1;SAF=406;SAP=884.628;SAR=0;SRF=136;SRP=298.331;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:195:42,151:42:1609:151:5748:-457.093,0,-78.9022 0/1:197:52,142:52:1987:142:5400:-415.81,0,-115.533 0/1:89:18,69:18:692:69:2609:-208.43,0,-31.032 0/1:68:24,44:24:898:44:1651:-123.441,0,-55.7354 dDocent_Contig_10755 79 . C A 50.8717 . AB=0.3;ABP=6.48466;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=47;DPB=47;DPRA=0.810811;EPP=9.52472;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=105;QR=1510;RO=44;RPL=3;RPP=9.52472;RPPR=98.5551;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:17:17,0:17:579:0:0:0,-5.11751,-52.4316 0/0:18:18,0:18:616:0:0:0,-5.41854,-55.7615 0/0:2:2,0:2:70:0:0:0,-0.60206,-6.6474 0/1:10:7,3:7:245:3:105:-6.78586,0,-19.3809 dDocent_Contig_10756 10 . C A 50.2555 . AB=0.112903;ABP=83.705;AC=1;AF=0.125;AN=8;AO=17;CIGAR=1X;DP=435;DPB=435;DPRA=0;EPP=39.9253;EPPR=904.171;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=59.947;NS=4;NUMALT=1;ODDS=0;PAIRED=0.882353;PAIREDR=0.749398;PAO=0;PQA=0;PQR=0;PRO=0;QA=679;QR=16667;RO=415;RPL=0;RPP=39.9253;RPPR=904.171;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=415;SRP=904.171;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:109:106,3:106:4238:3:116:0,-21.996,-370.561 0/0:136:132,3:132:5325:3:122:0,-29.6678,-467.598 0/0:128:122,4:122:4896:4:163:0,-23.28,-425.463 0/1:62:55,7:55:2208:7:278:-6.72452,0,-180.223 dDocent_Contig_10757 13 . G A 296.586 . AB=0.297872;ABP=19.6891;AC=3;AF=0.375;AN=8;AO=15;CIGAR=1X;DP=71;DPB=71;DPRA=0;EPP=35.5824;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=569;QR=2220;RO=56;RPL=0;RPP=35.5824;RPPR=124.613;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:24:23,1:23:913:1:36:0,-3.62644,-78.8706 0/1:32:23,9:23:934:9:329:-20.3119,0,-74.7286 0/1:8:4,4:4:153:4:163:-12.6502,0,-11.7297 0/1:7:6,1:6:220:1:41:-1.98736,0,-18.0356 dDocent_Contig_10758 15 . G A 177.081 . AB=0.0638298;ABP=80.6751;AC=1;AF=0.125;AN=8;AO=3;CIGAR=2X;DP=144;DPB=144;DPRA=0.839286;EPP=9.52472;EPPR=272.273;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.887097;PAO=0;PQA=0;PQR=0;PRO=0;QA=119;QR=4867;RO=124;RPL=0;RPP=9.52472;RPPR=272.273;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=124;SRP=272.273;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:69:57,0,9:57:2253:0,9:0,363:-12.8232,-29.982,-215.383,0,-185.46,-182.75 0|0:28:28,0,0:28:1084:0,0:0,0:0,-8.42884,-97.8475,-8.42884,-97.8475,-97.8475 0|0:38:32,1,5:32:1249:1,5:38,183:-5.30621,-11.8203,-114.202,0,-99.5552,-101.166 0|1:9:7,2,0:7:281:2,0:81,0:-4.97646,0,-22.9527,-7.08367,-23.5548,-30.2347 dDocent_Contig_10759 23 . G A 862.366 . AB=0.324324;ABP=32.7653;AC=4;AF=0.5;AN=8;AO=36;CIGAR=1X;DP=111;DPB=111;DPRA=0;EPP=81.1833;EPPR=165.871;GTI=0;LEN=1;MEANALT=1;MQM=58.8889;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.944444;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1400;QR=2928;RO=75;RPL=0;RPP=81.1833;RPPR=165.871;RPR=36;RUN=1;SAF=36;SAP=81.1833;SAR=0;SRF=75;SRP=165.871;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:17,4:17:672:4:154:-7.52794,0,-54.4927 0/1:59:42,17:42:1623:17:660:-41.9668,0,-128.562 0/1:18:12,6:12:472:6:243:-16.8294,0,-37.4126 0/1:13:4,9:4:161:9:343:-27.3103,0,-10.9621 dDocent_Contig_10760 16 . T A 217.07 . AB=0.157895;ABP=80.269;AC=2;AF=0.25;AN=8;AO=12;CIGAR=4M1X1M;DP=141;DPB=139.333;DPRA=0;EPP=29.068;EPPR=252.73;GTI=0;LEN=1;MEANALT=2;MQM=54.8333;MQMR=49.0348;NS=4;NUMALT=3;ODDS=0;PAIRED=0.75;PAIREDR=0.669565;PAO=0;PQA=0;PQR=0;PRO=0;QA=474;QR=4533;RO=115;RPL=0;RPP=29.068;RPPR=252.73;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=115;SRP=252.73;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:33:30,0,3,0:30:1186:0,3,0:0,122,0:-1.43486,-10.4658,-88.4857,0,-78.4184,-77.5153,-10.4658,-88.4857,-78.4184,-88.4857 0|0:32:28,4,0,0:28:1122:4,0,0:159,0,0:-5.04998,0,-77.4948,-13.4788,-78.6989,-91.7874,-13.4788,-78.6989,-91.7874,-91.7874 0|0:50:38,6,0,6:38:1489:6,0,6:235,0,235:-7.86582,0,-109.775,-19.305,-111.581,-130.883,-0.669424,-92.9367,-112.24,-110.434 0|1:26:19,0,1,6:19:736:0,1,6:0,40,239:-14.1393,-19.8588,-75.1705,-18.4827,-73.7714,-73.4704,0,-55.4788,-54.0812,-53.6726 dDocent_Contig_10761 98 . N A 123.911 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=4;CIGAR=2X;DP=4;DPB=4.5;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=7.37776;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=134;QR=0;RO=0;RPL=4;RPP=11.6962;RPPR=0;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. 1|1:4:0,4:0:0:4:134:-12.3909,-1.20412,0 .:.:.:.:.:.:.:. dDocent_Contig_10762 107 . N T 296.516 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=10;CIGAR=1X;DP=10;DPB=10;DPRA=0;EPP=24.725;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=319;QR=0;RO=0;RPL=0;RPP=24.725;RPPR=0;RPR=10;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:102:-9.51673,-0.90309,0 1/1:7:0,7:0:0:7:217:-19.8336,-2.10721,0 ./.:.:.:.:.:.:.:. dDocent_Contig_10763 14 . C G 776.364 . AB=0.473684;ABP=3.35316;AC=3;AF=0.375;AN=8;AO=28;CIGAR=1X;DP=69;DPB=69;DPRA=0;EPP=63.8115;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.75;PAIREDR=0.756098;PAO=0;PQA=0;PQR=0;PRO=0;QA=1127;QR=1643;RO=41;RPL=0;RPP=63.8115;RPPR=92.0407;RPR=28;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:12:11,1:11:438:1:33:0,-0.313225,-36.4745 0/1:9:1,8:1:41:8:318:-26.2776,0,-1.3853 0/1:24:14,10:14:562:10:407:-29.7653,0,-43.6957 0/1:24:15,9:15:602:9:369:-26.3507,0,-47.2933 dDocent_Contig_10764 110 . A G 158.061 . AB=0.13198;ABP=234.763;AC=3;AF=0.375;AN=8;AO=26;CIGAR=1X;DP=243;DPB=243;DPRA=1.42754;EPP=59.4686;EPPR=469.877;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.995349;PAO=0;PQA=0;PQR=0;PRO=0;QA=879;QR=6015;RO=215;RPL=0;RPP=59.4686;RPPR=469.877;RPR=26;RUN=1;SAF=0;SAP=59.4686;SAR=26;SRF=0;SRP=469.877;SRR=215;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:98:85,12:85:2361:12:405:-7.48523,0,-183.455 0/1:44:37,7:37:1044:7:240:-8.68962,0,-80.9785 0/0:46:46,0:46:1254:0:0:0,-13.8474,-113.113 0/1:55:47,7:47:1356:7:234:-5.02911,0,-105.973 dDocent_Contig_10765 50 . T C 506.834 . AB=0.404255;ABP=6.75262;AC=2;AF=0.25;AN=8;AO=21;CIGAR=1X;DP=101;DPB=101;DPRA=0.788889;EPP=32.8939;EPPR=174.557;GTI=0;LEN=1;MEANALT=1.33333;MQM=56.2381;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.904762;PAIREDR=0.848101;PAO=0;PQA=0;PQR=0;PRO=0;QA=827;QR=3132;RO=79;RPL=2;RPP=32.8939;RPPR=174.557;RPR=19;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=79;SRP=174.557;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:17,12:17:689:12:486:-35.3614,0,-53.6094 0/0:30:30,0:30:1165:0:0:0,-9.0309,-105.126 0/0:24:22,2:22:878:2:66:0,-2.03521,-74.1394 0/1:18:10,7:10:400:7:275:-18.72,0,-31.0872 dDocent_Contig_10767 20 . T C 594.152 . AB=0.302326;ABP=32.1989;AC=4;AF=0.5;AN=8;AO=26;CIGAR=1X;DP=86;DPB=86;DPRA=0;EPP=59.4686;EPPR=133.299;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.961538;PAIREDR=0.966667;PAO=0;PQA=0;PQR=0;PRO=0;QA=1013;QR=2369;RO=60;RPL=0;RPP=59.4686;RPPR=133.299;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:38:27,11:27:1061:11:433:-27.8834,0,-84.3433 0/1:18:16,2:16:636:2:82:-2.36114,0,-52.1544 0/1:26:15,11:15:604:11:417:-30.0421,0,-46.8712 0/1:4:2,2:2:68:2:81:-6.48161,0,-5.25051 dDocent_Contig_10768 19 . G T 1014.17 . AB=0.5;ABP=3.0103;AC=4;AF=0.5;AN=8;AO=36;CIGAR=1X;DP=72;DPB=72;DPRA=0;EPP=81.1833;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1434;QR=1458;RO=36;RPL=0;RPP=81.1833;RPPR=81.1833;RPR=36;RUN=1;SAF=36;SAP=81.1833;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:14,17:14:562:17:688:-52.9165,0,-41.5904 0/1:16:9,7:9:367:7:278:-20.5728,0,-28.5786 0/1:13:6,7:6:245:7:276:-21.2916,0,-18.5161 0/1:12:7,5:7:284:5:192:-14.034,0,-22.3214 dDocent_Contig_10770 138 . A G 280.573 . AB=0.318182;ABP=9.32731;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X2M1X;DP=78;DPB=78;DPRA=1.17857;EPP=18.2106;EPPR=133.299;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=284;QR=2165;RO=60;RPL=0;RPP=18.2106;RPPR=133.299;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=133.299;SRR=60;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:22:6,7,9:6:214:7,9:284,311:-29.4552,-7.81387,-23.1556,-6.02552,0,-20.7383 0|0:24:23,0,0:23:816:0,0:0,0:0,-6.92369,-73.4432,-6.92369,-73.4432,-73.4432 0|0:17:17,0,0:17:613:0,0:0,0:0,-5.11751,-55.4967,-5.11751,-55.4967,-55.4967 0|0:15:14,0,0:14:522:0,0:0,0:0,-4.21442,-47.1272,-4.21442,-47.1272,-47.1272 dDocent_Contig_10772 28 . A G 1303.08 . AB=0.466019;ABP=4.04333;AC=4;AF=0.5;AN=8;AO=48;CIGAR=1X;DP=103;DPB=103;DPRA=0;EPP=107.241;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1859;QR=2164;RO=55;RPL=0;RPP=107.241;RPPR=122.441;RPR=48;RUN=1;SAF=48;SAP=107.241;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:39:9,30:9:348:30:1149:-91.9385,0,-19.9317 0/1:43:31,12:31:1228:12:464:-29.1595,0,-97.8452 0/1:13:10,3:10:388:3:123:-7.5514,0,-31.3563 0/1:8:5,3:5:200:3:123:-9.05655,0,-15.9708 dDocent_Contig_10773 10 . A T 361.505 . AB=0.185185;ABP=95.9815;AC=3;AF=0.375;AN=8;AO=23;CIGAR=1X3M;DP=193;DPB=193;DPRA=0;EPP=52.9542;EPPR=350.446;GTI=0;LEN=1;MEANALT=1.75;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=927;QR=6340;RO=160;RPL=0;RPP=52.9542;RPPR=350.446;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=160;SRP=350.446;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:85:76,6,3:76:3013:6,3:234,121:0,-3.65304,-249.846,-12.8998,-241.678,-260.008 0|1:63:54,3,6:54:2140:3,6:120,242:-3.69506,-10.0665,-185.295,0,-166.249,-174.328 0|1:36:25,1,10:25:986:1,10:41,403:-25.6852,-29.8262,-110.645,0,-77.7265,-78.1008 0|1:9:5,0,4:5:201:0,4:0,161:-12.166,-13.6712,-30.2351,0,-16.9657,-15.7616 dDocent_Contig_10774 16 . A T 223.636 . AB=0.113636;ABP=60.0608;AC=4;AF=0.5;AN=8;AO=5;CIGAR=2M1D1M1X;DP=88;DPB=84;DPRA=0;EPP=13.8677;EPPR=150.67;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=200;QR=2718;RO=68;RPL=0;RPP=13.8677;RPPR=150.67;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=68;SRP=150.67;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:15:13,2,0:13:528:2,0:77,0:-2.79275,0,-43.3516,-6.70614,-43.9537,-50.2724 0|1:29:25,4,0:25:993:4,0:161,0:-6.1454,0,-80.9402,-13.6712,-82.1443,-95.4142 0|1:23:18,3,2:18:717:3,2:120,78:-4.47207,0,-58.1467,-3.48298,-52.6391,-61.9219 0|1:21:12,6,3:12:480:6,3:242,122:-16.3337,0,-37.7287,-9.88174,-29.4704,-48.5166 dDocent_Contig_10776 12 . T A 201.276 . AB=0.128205;ABP=190.314;AC=3;AF=0.375;AN=8;AO=24;CIGAR=1X2M1X;DP=206;DPB=206;DPRA=0;EPP=55.1256;EPPR=389.532;GTI=0;LEN=1;MEANALT=1.5;MQM=56.875;MQMR=57.0506;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=0.875;PAIREDR=0.949438;PAO=0;PQA=0;PQR=0;PRO=0;QA=952;QR=7102;RO=178;RPL=0;RPP=55.1256;RPPR=389.532;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=178;SRP=389.532;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:59:53,6:53:2107:6:241:-3.74036,0,-162.963 0|1:66:56,6:56:2244:6:235:-2.45537,0,-180.096 0|0:50:46,4:46:1828:4:162:0,-1.15297,-149.736 0|1:31:23,8:23:923:8:314:-19.2914,0,-74.0183 dDocent_Contig_10777 11 . T C 1280.91 . AB=0.309091;ABP=55.2441;AC=4;AF=0.5;AN=8;AO=51;CIGAR=1X;DP=165;DPB=165;DPRA=0;EPP=113.755;EPPR=250.558;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.54902;PAIREDR=0.482456;PAO=0;PQA=0;PQR=0;PRO=0;QA=2042;QR=4547;RO=114;RPL=0;RPP=113.755;RPPR=250.558;RPR=51;RUN=1;SAF=51;SAP=113.755;SAR=0;SRF=114;SRP=250.558;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:33:24,9:24:952:9:366:-23.3712,0,-76.0506 0/1:43:31,12:31:1242:12:480:-30.6052,0,-99.1086 0/1:33:24,9:24:965:9:351:-22.0109,0,-77.2165 0/1:56:35,21:35:1388:21:845:-59.5013,0,-108.323 dDocent_Contig_10778 32 . A T 321.925 . AB=0.180451;ABP=120.972;AC=3;AF=0.375;AN=8;AO=28;CIGAR=1X;DP=239;DPB=239;DPRA=0;EPP=63.8115;EPPR=461.191;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.687204;PAO=0;PQA=0;PQR=0;PRO=0;QA=1002;QR=8241;RO=211;RPL=0;RPP=63.8115;RPPR=461.191;RPR=28;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=211;SRP=461.191;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:57:47,10:47:1831:10:358:-15.4005,0,-147.851 0/0:106:102,4:102:3934:4:151:0,-17.9515,-340.128 0/1:64:52,12:52:2068:12:419:-18.7723,0,-167.049 0/1:12:10,2:10:408:2:74:-3.41341,0,-33.4682 dDocent_Contig_10779 25 . G A 1063.46 . AB=0.584615;ABP=7.05258;AC=3;AF=0.375;AN=8;AO=38;CIGAR=1X;DP=67;DPB=67;DPRA=10.8333;EPP=41.6397;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.842105;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1448;QR=1161;RO=29;RPL=0;RPP=85.5263;RPPR=65.983;RPR=38;RUN=1;SAF=32;SAP=41.6397;SAR=6;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:13,16:13:525:16:609:-46.4015,0,-38.8656 0/1:14:6,8:6:243:8:276:-20.9527,0,-18.0335 0/1:22:8,14:8:311:14:563:-44.3899,0,-21.7273 0/0:2:2,0:2:82:0:0:0,-0.60206,-7.77968 dDocent_Contig_10780 9 . C A 1750.26 . AB=0.422018;ABP=8.76769;AC=5;AF=0.625;AN=8;AO=60;CIGAR=1X3M1X3M1X;DP=124;DPB=124;DPRA=0;EPP=133.299;EPPR=139.813;GTI=0;LEN=1;MEANALT=1.25;MQM=58.3667;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.733333;PAIREDR=0.968254;PAO=0;PQA=0;PQR=0;PRO=0;QA=2361;QR=2486;RO=63;RPL=0;RPP=133.299;RPPR=139.813;RPR=60;RUN=1;SAF=60;SAP=133.299;SAR=0;SRF=63;SRP=139.813;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:58:47,11:47:1854:11:434:-21.924,0,-149.63 1|1:15:0,14:0:0:14:554:-49.7437,-4.21442,0 0|1:32:10,22:10:393:22:855:-67.5382,0,-26.0955 0|1:19:6,13:6:239:13:518:-41.2178,0,-16.1658 dDocent_Contig_10781 11 . T A 35.6075 . AB=0.15;ABP=24.2907;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=91;DPB=91;DPRA=0.833333;EPP=13.8677;EPPR=189.757;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.8;PAIREDR=0.581395;PAO=0;PQA=0;PQR=0;PRO=0;QA=193;QR=3401;RO=86;RPL=0;RPP=13.8677;RPPR=189.757;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=86;SRP=189.757;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:26:25,1:25:984:1:40:0,-3.8311,-84.8532 0/0:26:26,0:26:1022:0:0:0,-7.82678,-92.2692 0/1:20:17,3:17:680:3:121:-5.2596,0,-55.5083 0/0:19:18,1:18:715:1:32:0,-2.52026,-61.4756 dDocent_Contig_10782 11 . G A 251.964 . AB=0.125;ABP=22.5536;AC=4;AF=0.5;AN=8;AO=2;CIGAR=4M1X;DP=58;DPB=58;DPRA=1.3913;EPP=7.35324;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=1651;RO=43;RPL=0;RPP=7.35324;RPPR=96.3836;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:19:9,8,2,0:9:346:8,2,0:300,63,0:-21.9115,0,-26.0534,-19.5659,-23.4074,-47.3738,-24.6208,-28.4616,-47.9759,-53.0359 0|0:22:20,2,0,0:20:768:2,0,0:63,0,0:0,-0.639222,-63.4643,-6.0206,-64.0663,-69.1265,-6.0206,-64.0663,-69.1265,-69.1265 0|1:16:14,0,0,2:14:537:0,0,2:0,0,81:-2.86925,-7.08367,-51.1416,-7.08367,-51.1416,-51.1416,0,-44.4598,-44.4598,-43.8577 1|1:1:0,1,0,0:0:0:1,0,0:38,0,0:-3.79727,-0.30103,0,-3.79727,-0.30103,-3.79727,-3.79727,-0.30103,-3.79727,-3.79727 dDocent_Contig_10783 113 . C T 65.9207 . AB=0.5;ABP=3.0103;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=27;DPB=27;DPRA=0.857143;EPP=9.52472;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=105;QR=803;RO=24;RPL=0;RPP=9.52472;RPPR=55.1256;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=55.1256;SRR=24;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:6:3,3:3:101:3:105:-7.98998,0,-7.61742 0/0:7:7,0:7:220:0:0:0,-2.10721,-20.1084 0/0:8:8,0:8:276:0:0:0,-2.40824,-25.1759 0/0:6:6,0:6:206:0:0:0,-1.80618,-18.8767 dDocent_Contig_10784 209 . N G 77.8076 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:82:-7.77968,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_10785 178 . C T 43.6897 . AB=0.230769;ABP=11.1951;AC=2;AF=0.25;AN=8;AO=3;CIGAR=1X;DP=28;DPB=28;DPRA=0.866667;EPP=9.52472;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=123;QR=996;RO=25;RPL=3;RPP=9.52472;RPPR=57.2971;RPR=0;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=57.2971;SRR=25;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:6:6,0:6:242:0:0:0,-1.80618,-22.1573 0/0:9:9,0:9:360:0:0:0,-2.70927,-32.7618 0/1:7:6,1:6:235:1:41:-1.98736,0,-19.4108 0/1:6:4,2:4:159:2:82:-5.9735,0,-12.8853 dDocent_Contig_10786 17 . A G 35.6787 . AB=0.129032;ABP=40.0654;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=185;DPB=185;DPRA=0.603896;EPP=11.6962;EPPR=396.047;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=57.7459;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.513812;PAO=0;PQA=0;PQR=0;PRO=0;QA=158;QR=7286;RO=181;RPL=0;RPP=11.6962;RPPR=396.047;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=181;SRP=396.047;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:66:66,0:66:2661:0:0:0,-19.868,-229.165 0/0:56:56,0:56:2267:0:0:0,-16.8577,-204.185 0/0:32:32,0:32:1294:0:0:0,-9.63296,-110.769 0/1:31:27,4:27:1064:4:158:-5.26673,0,-80.5829 dDocent_Contig_10787 23 . G A 338.688 . AB=0.0694444;ABP=118.943;AC=2;AF=0.25;AN=8;AO=8;CIGAR=1X2M;DP=134;DPB=134;DPRA=0;EPP=20.3821;EPPR=217.986;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=0.989899;PAO=0;PQA=0;PQR=0;PRO=0;QA=298;QR=3709;RO=99;RPL=0;RPP=20.3821;RPPR=217.986;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=99;SRP=217.986;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:47:42,0,3,2:42:1578:0,3,2:0,113,80:0,-12.6433,-141.907,-3.40058,-132.651,-131.748,-6.04399,-135.316,-126.06,-134.714 0|0:58:43,2,3,10:43:1591:2,3,10:80,106,348:-15.3246,-21.6721,-151.228,-19.6415,-143.202,-148.89,0,-123.549,-121.513,-127.13 1|0:15:4,4,0,7:4:157:4,0,7:158,0,262:-20.3269,-8.52238,-20.2371,-21.5311,-21.4412,-34.4462,-0.091395,0,-13.0024,-10.8952 0|1:14:10,0,2,2:10:383:0,2,2:0,79,74:-3.50309,-6.51339,-37.9461,0,-31.4432,-30.8411,-0.472197,-31.8947,-25.3917,-31.2926 dDocent_Contig_10788 10 . A G 513.273 . AB=0.271605;ABP=39.7109;AC=1;AF=0.125;AN=8;AO=23;CIGAR=1X;DP=236;DPB=236;DPRA=1.20561;EPP=52.9542;EPPR=461.191;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=894;QR=8431;RO=211;RPL=0;RPP=52.9542;RPPR=461.191;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=211;SRP=461.191;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:70:69,0:69:2770:0:0:0,-20.7711,-249.004 0/1:81:58,22:58:2297:22:858:-53.0263,0,-182.391 0/0:37:37,0:37:1476:0:0:0,-11.1381,-133.087 0/0:48:47,1:47:1888:1:36:0,-10.8512,-166.526 dDocent_Contig_10789 21 . T C 241.885 . AB=0.178082;ABP=68.7196;AC=1;AF=0.125;AN=8;AO=43;CIGAR=1X;DP=721;DPB=721;DPRA=0;EPP=87.8997;EPPR=1475.27;GTI=0;LEN=1;MEANALT=1;MQM=56.3953;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.395349;PAIREDR=0.768437;PAO=0;PQA=0;PQR=0;PRO=0;QA=1739;QR=26902;RO=678;RPL=0;RPP=96.3836;RPPR=1475.27;RPR=43;RUN=1;SAF=42;SAP=87.8997;SAR=1;SRF=678;SRP=1475.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:267:263,4:263:10503:4:164:0,-65.5474,-929.753 0/0:231:214,17:214:8434:17:693:0,-7.42273,-696.495 0/0:150:141,9:141:5627:9:354:0,-13.1951,-474.291 0/1:73:60,13:60:2338:13:528:-25.8875,0,-188.601 dDocent_Contig_10790 7 . A C 1849.39 . AB=0.146853;ABP=157.914;AC=1;AF=0.125;AN=8;AO=21;CIGAR=1X1M1X;DP=151;DPB=151;DPRA=0;EPP=48.6112;EPPR=139.813;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=801;QR=2406;RO=63;RPL=0;RPP=48.6112;RPPR=139.813;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=63;SRP=139.813;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:78:24,7,47:24:921:7,47:267,1797:-140.228,-125.548,-199.042,0,-53.6977,-61.4536 0|0:28:20,2,6:20:769:2,6:73,233:-13.1427,-13.2047,-75.7339,0,-57.1892,-61.3457 0|1:37:13,12,12:13:484:12,12:461,456:-33.9335,0,-36.0026,-0.453025,-2.21532,-36.4535 0|0:8:6,0,2:6:232:0,2:0,78:-4.99523,-6.80141,-25.8555,0,-19.4429,-18.8408 dDocent_Contig_10792 35 . T C 111.021 . AB=0.170732;ABP=41.6201;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X3M1X;DP=67;DPB=67;DPRA=4.73077;EPP=18.2106;EPPR=133.299;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=272;QR=2392;RO=60;RPL=0;RPP=18.2106;RPPR=133.299;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:41:34,7:34:1347:7:272:-12.5,0,-109.152 0|0:8:8,0:8:322:0:0:0,-2.40824,-29.3487 0|0:5:5,0:5:202:0:0:0,-1.50515,-18.5621 0|0:13:13,0:13:521:0:0:0,-3.91339,-47.2378 dDocent_Contig_10793 25 . A C 1832.82 . AB=0.362637;ABP=17.9243;AC=1;AF=0.125;AN=8;AO=33;CIGAR=3M1X2M;DP=164;DPB=157;DPRA=0;EPP=74.6689;EPPR=196.271;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1319;QR=3483;RO=89;RPL=0;RPP=74.6689;RPPR=196.271;RPR=33;RUN=1;SAF=33;SAP=74.6689;SAR=0;SRF=89;SRP=196.271;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:56:38,18,0:38:1486:18,0:719,0:-48.1781,0,-117.145,-59.6172,-122.564,-181.785 0|1:66:30,6,30:30:1171:6,30:225,1203:-90.1043,-80.7127,-175.158,0,-77.8454,-87.2389 0|0:17:6,11,0:6:231:11,0:440,0:-34.8376,0,-16.0399,-36.6437,-19.3513,-55.6051 0|0:25:15,7,3:15:595:7,3:269,116:-17.5599,0,-46.8811,-12.5467,-39.462,-60.6321 dDocent_Contig_10794 8 . A C 1618.13 . AB=0.455224;ABP=5.34382;AC=3;AF=0.375;AN=8;AO=61;CIGAR=1M1I2M1X;DP=147;DPB=162.5;DPRA=3.4359;EPP=135.47;EPPR=185.414;GTI=0;LEN=1;MEANALT=1.66667;MQM=58.8197;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=0.967213;PAIREDR=0.833333;PAO=0;PQA=0;PQR=0;PRO=0;QA=2322;QR=3204;RO=84;RPL=0;RPP=135.47;RPPR=185.414;RPR=61;RUN=1;SAF=61;SAP=135.47;SAR=0;SRF=84;SRP=185.414;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:62:32,30:32:1213:30:1141:-84.3289,0,-90.8029 0|1:46:25,19:25:953:19:726:-49.4093,0,-72.471 0|1:26:14,12:14:536:12:455:-33.4729,0,-40.7578 0|0:13:13,0:13:502:0:0:0,-3.91339,-45.5288 dDocent_Contig_10795 16 . C A 40.6746 . AB=0.214286;ABP=12.937;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=163;DPB=163;DPRA=1.17333;EPP=20.3821;EPPR=339.589;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=303;QR=6133;RO=155;RPL=0;RPP=20.3821;RPPR=339.589;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=155;SRP=339.589;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:74:69,5:69:2754:5:196:0,-4.26317,-229.964 0/0:42:42,0:42:1666:0:0:0,-12.6433,-150.166 0/0:33:33,0:33:1280:0:0:0,-9.93399,-115.458 0/1:14:11,3:11:433:3:107:-5.76639,0,-35.1059 dDocent_Contig_10796 15 . A G 358.752 . AB=0.2;ABP=34.2795;AC=2;AF=0.25;AN=8;AO=8;CIGAR=2M1X;DP=97;DPB=122.667;DPRA=1.81818;EPP=20.3821;EPPR=170.214;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=325;QR=3059;RO=77;RPL=0;RPP=20.3821;RPPR=170.214;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=77;SRP=170.214;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:22:17,0,4:17:683:0,4:0,162:-8.23686,-13.3544,-69.6323,0,-56.2735,-55.0693 0|0:46:35,11,0:35:1378:11,0:410,0:-23.3964,0,-110.432,-33.9325,-113.744,-147.299 0|1:18:14,0,4:14:560:0,4:0,163:-9.63989,-13.8543,-59.9761,0,-46.5272,-45.3231 0|0:11:11,0,0:11:438:0,0:0,0:0,-3.31133,-39.7744,-3.31133,-39.7744,-39.7744 dDocent_Contig_10797 116 . G A 169.935 . AB=0.28125;ABP=16.3106;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X;DP=77;DPB=77;DPRA=2.13333;EPP=22.5536;EPPR=150.67;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=311;QR=2344;RO=68;RPL=0;RPP=22.5536;RPPR=150.67;RPR=9;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=150.67;SRR=68;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:16:16,0:16:541:0:0:0,-4.81648,-49.0112 0/1:32:23,9:23:798:9:311:-18.6924,0,-62.5071 0/0:26:26,0:26:900:0:0:0,-7.82678,-81.3153 0/0:3:3,0:3:105:0:0:0,-0.90309,-9.79616 dDocent_Contig_10798 49 . A T 119.881 . AB=0.107143;ABP=40.5458;AC=0;AF=0;AN=8;AO=3;CIGAR=7M1X7M1X;DP=156;DPB=154.375;DPRA=0.486957;EPP=9.52472;EPPR=244.044;GTI=0;LEN=1;MEANALT=5;MQM=60;MQMR=60;NS=4;NUMALT=5;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=111;QR=4376;RO=111;RPL=3;RPP=9.52472;RPPR=244.044;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=111;SRP=244.044;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:100:75,7,0,0,5,0:75:2952:7,0,0,5,0:260,0,0,199,0:0,-1.30579,-242.044,-22.5772,-244.151,-265.425,-22.5772,-244.151,-265.425,-265.425,-6.18803,-227.765,-249.04,-249.04,-247.534,-22.5772,-244.151,-265.425,-265.425,-249.04,-265.425 0|0:28:16,0,3,3,2,3:16:629:0,3,3,2,3:0,108,119,79,111:-4.98785,-9.80433,-61.5535,-0.996166,-52.7443,-51.8412,0,-51.7559,-42.9469,-50.8528,-3.29873,-55.0516,-46.2426,-45.2538,-54.4496,-0.723818,-52.4741,-43.6655,-42.6765,-45.9723,-51.571 0|0:15:13,1,0,0,0,0:13:516:1,0,0,0,0:39,0,0,0,0:0,-0.702547,-42.8957,-3.91339,-43.1967,-46.4022,-3.91339,-43.1967,-46.4022,-46.4022,-3.91339,-43.1967,-46.4022,-46.4022,-46.4022,-3.91339,-43.1967,-46.4022,-46.4022,-46.4022,-46.4022 0|0:13:7,4,1,0,0,0:7:279:4,1,0,0,0:151,37,0,0,0:-10.3674,0,-21.9031,-9.4393,-20.0791,-32.1604,-12.4747,-23.1072,-32.4614,-35.4887,-12.4747,-23.1072,-32.4614,-35.4887,-35.4887,-12.4747,-23.1072,-32.4614,-35.4887,-35.4887,-35.4887 dDocent_Contig_10799 116 . C A 85.0403 . AB=0.124031;ABP=161.393;AC=2;AF=0.25;AN=8;AO=20;CIGAR=1X;DP=223;DPB=223;DPRA=0;EPP=46.4397;EPPR=441.648;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=688;QR=6591;RO=202;RPL=0;RPP=46.4397;RPPR=441.648;RPR=20;RUN=1;SAF=0;SAP=46.4397;SAR=20;SRF=0;SRP=441.648;SRR=202;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:50:45,5:45:1439:5:179:-1.40889,0,-114.737 0/1:79:67,11:67:2242:11:374:-10.1757,0,-178.235 0/0:72:70,2:70:2252:2:70:0,-15.0268,-196.29 0/0:22:20,2:20:658:2:65:0,-0.449135,-53.357 dDocent_Contig_10801 28 . C G 99.7262 . AB=0.2;ABP=30.3709;AC=3;AF=0.375;AN=8;AO=7;CIGAR=1X;DP=42;DPB=42;DPRA=1.66667;EPP=18.2106;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=275;QR=1407;RO=35;RPL=0;RPP=18.2106;RPPR=79.0118;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:10,2:10:403:2:79:-3.88488,0,-33.0152 0/0:7:7,0:7:281:0:0:0,-2.10721,-25.6617 0/1:12:10,2:10:399:2:79:-3.88488,0,-32.657 0/1:11:8,3:8:324:3:117:-7.59796,0,-26.2179 dDocent_Contig_10802 21 . G T 78.6734 . AB=0.5;ABP=3.0103;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=108;DPB=108;DPRA=3.26667;EPP=16.0391;EPPR=224.5;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=245;QR=4089;RO=102;RPL=0;RPP=16.0391;RPPR=224.5;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=102;SRP=224.5;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:56:54,2:54:2157:2:82:0,-9.078,-186.521 0/0:36:35,1:35:1413:1:41:0,-6.74251,-123.325 0/0:10:10,0:10:398:0:0:0,-3.0103,-36.1774 0/1:6:3,3:3:121:3:122:-9.56631,0,-9.47381 dDocent_Contig_10803 19 . T A 222.309 . AB=0.25;ABP=24.725;AC=2;AF=0.25;AN=8;AO=10;CIGAR=1X;DP=73;DPB=73;DPRA=1.21212;EPP=24.725;EPPR=139.813;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=410;QR=2558;RO=63;RPL=0;RPP=24.725;RPPR=139.813;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=63;SRP=139.813;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:23:23,0:23:929:0:0:0,-6.92369,-83.91 0/1:16:13,3:13:530:3:123:-6.64831,0,-43.2301 0/1:24:17,7:17:696:7:287:-18.9805,0,-55.742 0/0:10:10,0:10:403:0:0:0,-3.0103,-36.629 dDocent_Contig_10804 92 . C A 41.1539 . AB=0.153846;ABP=43.6001;AC=2;AF=0.25;AN=8;AO=8;CIGAR=1X;DP=74;DPB=74;DPRA=0.84127;EPP=20.3821;EPPR=146.327;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.909091;PAO=0;PQA=0;PQR=0;PRO=0;QA=246;QR=2194;RO=66;RPL=8;RPP=20.3821;RPPR=146.327;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=66;SRP=146.327;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:14:12,2:12:381:2:40:0,-0.415243,-30.8005 0/1:16:13,3:13:439:3:105:-4.97968,0,-35.0179 0/0:21:21,0:21:703:0:0:0,-6.32163,-63.5849 0/1:23:20,3:20:671:3:101:-2.50008,0,-53.7818 dDocent_Contig_10805 67 . G A 299.519 . AB=0.317073;ABP=14.9269;AC=1;AF=0.125;AN=8;AO=13;CIGAR=1X;DP=130;DPB=130;DPRA=1.38202;EPP=31.2394;EPPR=257.073;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=485;QR=4423;RO=117;RPL=13;RPP=31.2394;RPPR=257.073;RPR=0;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=117;SRP=257.073;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:40:40,0:40:1521:0:0:0,-12.0412,-137.162 0/1:41:28,13:28:1072:13:485:-31.6509,0,-84.4413 0/0:31:31,0:31:1162:0:0:0,-9.33193,-104.877 0/0:18:18,0:18:668:0:0:0,-5.41854,-60.4451 dDocent_Contig_10806 18 . A G 134.87 . AB=0.5;ABP=3.0103;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=34;DPB=34;DPRA=1.25;EPP=13.8677;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.827586;PAO=0;PQA=0;PQR=0;PRO=0;QA=198;QR=1150;RO=29;RPL=0;RPP=13.8677;RPPR=65.983;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:6:6,0:6:245:0:0:0,-1.80618,-22.4295 0/0:5:5,0:5:188:0:0:0,-1.50515,-17.2787 0/0:13:13,0:13:516:0:0:0,-3.91339,-46.7837 0/1:10:5,5:5:201:5:198:-15.186,0,-15.4602 dDocent_Contig_10807 30 . T C 2022.91 . AB=0.560976;ABP=6.98251;AC=4;AF=0.5;AN=8;AO=69;CIGAR=1M1I2M1X1M;DP=123;DPB=137.8;DPRA=0;EPP=152.842;EPPR=107.241;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.710145;PAIREDR=0.75;PAO=0;PQA=0;PQR=0;PRO=0;QA=2720;QR=1883;RO=48;RPL=0;RPP=152.842;RPPR=107.241;RPR=69;RUN=1;SAF=69;SAP=152.842;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:31:19,10,2:19:747:10,2:403,82:-27.4901,0,-58.4151,-26.4404,-54.6557,-87.2724 0|1:34:10,21,2:10:395:21,2:797,78:-62.3239,0,-26.1913,-58.9217,-26.1018,-90.8287 0|1:32:12,20,0:12:460:20,0:804,0:-63.046,0,-32.1111,-66.6584,-38.1317,-104.4 0|1:26:7,18,0:7:281:18,0:716,0:-56.8291,0,-17.728,-58.9363,-23.1466,-82.0911 dDocent_Contig_10809 13 . T A 326.935 . AB=0.294118;ABP=21.7871;AC=4;AF=0.5;AN=8;AO=15;CIGAR=1X;DP=51;DPB=51;DPRA=0;EPP=35.5824;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=0.4;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=599;QR=1451;RO=36;RPL=0;RPP=35.5824;RPPR=81.1833;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:12,3:12:485:3:119:-6.57956,0,-39.486 0/1:7:5,2:5:203:2:79:-5.39003,0,-16.5458 0/1:21:13,8:13:524:8:320:-22.8442,0,-41.1845 0/1:8:6,2:6:239:2:81:-5.27749,0,-19.4766 dDocent_Contig_10810 77 . G A 65.9379 . AB=0.2;ABP=22.5536;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=77;DPB=77;DPRA=1.44231;EPP=13.8677;EPPR=159.356;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=172;QR=2437;RO=72;RPL=5;RPP=13.8677;RPPR=159.356;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=72;SRP=159.356;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:28:28,0:28:975:0:0:0,-8.42884,-88.0642 0/1:25:20,5:20:671:5:172:-8.29272,0,-53.1775 0/0:19:19,0:19:653:0:0:0,-5.71957,-59.0927 0/0:5:5,0:5:138:0:0:0,-1.50515,-12.6935 dDocent_Contig_10811 13 . C T 492.296 . AB=0.268293;ABP=41.2494;AC=4;AF=0.5;AN=8;AO=22;CIGAR=1X;DP=82;DPB=82;DPRA=0;EPP=50.7827;EPPR=133.299;GTI=0;LEN=1;MEANALT=1;MQM=57.1818;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.545455;PAIREDR=0.616667;PAO=0;PQA=0;PQR=0;PRO=0;QA=888;QR=2402;RO=60;RPL=0;RPP=50.7827;RPPR=133.299;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:12,4:12:478:4:162:-10.0979,0,-38.5509 0/1:18:12,6:12:487:6:242:-16.684,0,-38.7631 0/1:27:19,8:19:765:8:323:-21.3034,0,-61.0445 0/1:21:17,4:17:672:4:161:-8.54217,0,-54.488 dDocent_Contig_10813 107 . N A 358.187 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=11;CIGAR=1X;DP=11;DPB=11;DPRA=0;EPP=26.8965;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=387;QR=0;RO=0;RPL=0;RPP=26.8965;RPPR=0;RPR=11;RUN=1;SAF=0;SAP=26.8965;SAR=11;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:8:0,8:0:0:8:282:-25.7213,-2.40824,0 ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:105:-9.79609,-0.90309,0 dDocent_Contig_10814 35 . T A 342.316 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=9;CIGAR=1X;DP=9;DPB=9;DPRA=0;EPP=22.5536;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=50.6667;MQMR=0;NS=3;NUMALT=1;ODDS=1.69407e-21;PAIRED=0.555556;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=366;QR=0;RO=0;RPL=0;RPP=22.5536;RPPR=0;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1:0,1:0:0:1:41:-4.00268,-0.30103,0 1/1:3:0,3:0:0:3:122:-11.1313,-0.90309,0 1/1:5:0,5:0:0:5:203:-18.4949,-1.50515,0 ./.:.:.:.:.:.:.:. dDocent_Contig_10815 200 . G A 130.585 . AB=0.555556;ABP=3.25157;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=42;DPB=42;DPRA=0.818182;EPP=13.8677;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=190;QR=1418;RO=37;RPL=5;RPP=13.8677;RPPR=83.3548;RPR=0;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=83.3548;SRR=37;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:10:10,0:10:379:0:0:0,-3.0103,-34.4617 0/1:9:4,5:4:157:5:190:-14.7575,0,-11.7997 0/0:18:18,0:18:695:0:0:0,-5.41854,-62.8831 0/0:5:5,0:5:187:0:0:0,-1.50515,-17.1914 dDocent_Contig_10816 61 . G T 67.3694 . AB=0.173913;ABP=24.253;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=52;DPB=52;DPRA=2.37931;EPP=11.6962;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.979167;PAO=0;PQA=0;PQR=0;PRO=0;QA=163;QR=1901;RO=48;RPL=4;RPP=11.6962;RPPR=107.241;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:19,4:19:740:4:163:-8.13474,0,-59.9898 0/0:19:19,0:19:758:0:0:0,-5.71957,-68.54 0/0:3:3,0:3:122:0:0:0,-0.90309,-11.3725 0/0:7:7,0:7:281:0:0:0,-2.10721,-25.6617 dDocent_Contig_10817 45 . T C 677.817 . AB=0.510638;ABP=3.0565;AC=3;AF=0.375;AN=8;AO=25;CIGAR=1X;DP=62;DPB=62;DPRA=0;EPP=57.2971;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=989;QR=1495;RO=37;RPL=0;RPP=57.2971;RPPR=83.3548;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:7,10:7:283:10:401:-31.332,0,-20.7261 0/1:21:8,13:8:325:13:509:-39.8342,0,-23.298 0/0:15:14,1:14:560:1:41:0,-0.420883,-46.6476 0/1:9:8,1:8:327:1:38:-1.088,0,-27.0908 dDocent_Contig_10818 19 . G C 436.38 . AB=0.414634;ABP=5.60547;AC=4;AF=0.5;AN=8;AO=17;CIGAR=1X;DP=41;DPB=41;DPRA=0;EPP=39.9253;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=687;QR=945;RO=24;RPL=0;RPP=39.9253;RPPR=55.1256;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:5,6:5:201:6:240:-18.6643,0,-15.1596 0/1:11:6,5:6:239:5:203:-15.3417,0,-18.5731 0/1:17:12,5:12:466:5:204:-13.6265,0,-37.1663 0/1:2:1,1:1:39:1:40:-3.39362,0,-3.2945 dDocent_Contig_10819 9 . A C 54.0182 . AB=0.16;ABP=28.1125;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=106;DPB=106;DPRA=0.925926;EPP=11.6962;EPPR=224.5;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.970588;PAO=0;PQA=0;PQR=0;PRO=0;QA=155;QR=3842;RO=102;RPL=0;RPP=11.6962;RPPR=224.5;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=102;SRP=224.5;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:21,4:21:781:4:155:-6.79969,0,-63.0877 0/0:46:46,0:46:1739:0:0:0,-13.8474,-156.771 0/0:31:31,0:31:1166:0:0:0,-9.33193,-105.236 0/0:4:4,0:4:156:0:0:0,-1.20412,-14.4173 dDocent_Contig_10820 107 . N G 127.607 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=7.37776;PAIRED=0.75;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=138;QR=0;RO=0;RPL=0;RPP=11.6962;RPPR=0;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:4:0,4:0:0:4:138:-12.7604,-1.20412,0 ./.:.:.:.:.:.:.:. dDocent_Contig_10821 41 . G A 117.54 . AB=0.172414;ABP=30.0414;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1M1X7M;DP=115;DPB=112.667;DPRA=0.941176;EPP=18.2106;EPPR=222.329;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=284;QR=3943;RO=101;RPL=0;RPP=18.2106;RPPR=222.329;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=101;SRP=222.329;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:34:33,0,0:33:1287:0,0:0,0:0,-9.93399,-115.706,-9.93399,-115.706,-115.706 0|1:29:23,0,5:23:891:0,5:0,203:-9.82366,-16.7473,-89.9251,0,-73.1796,-71.6744 0|0:35:31,0,2:31:1221:0,2:0,81:0,-9.33193,-109.846,-2.56546,-103.166,-102.564 0|0:17:14,3,0:14:544:3,0:112,0:-5.32823,0,-44.1852,-9.54264,-45.0883,-54.2552 dDocent_Contig_10823 181 . G A 161.083 . AB=0.272727;ABP=27.6861;AC=4;AF=0.5;AN=8;AO=15;CIGAR=1X2M1X;DP=55;DPB=55;DPRA=0;EPP=35.5824;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=425;QR=1419;RO=40;RPL=15;RPP=35.5824;RPPR=89.8692;RPR=0;RUN=1;SAF=0;SAP=35.5824;SAR=15;SRF=0;SRP=89.8692;SRR=40;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:14:10,4:10:358:4:118:-6.69883,0,-28.3475 0|1:14:9,5:9:321:5:139:-8.57196,0,-25.0184 0|1:12:10,2:10:353:2:52:-1.3273,0,-28.4948 0|1:15:11,4:11:387:4:116:-6.21301,0,-30.6507 dDocent_Contig_10824 25 . C T 121.151 . AB=0.125;ABP=12.7819;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X1M1X;DP=104;DPB=104;DPRA=0;EPP=9.52472;EPPR=196.271;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=117;QR=3505;RO=89;RPL=0;RPP=9.52472;RPPR=196.271;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=89;SRP=196.271;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:48:43,0,5:43:1673:0,5:0,204:-4.29459,-17.2389,-154.691,0,-137.857,-136.352 0|0:24:19,0,5:19:762:0,5:0,200:-11.1548,-16.8744,-79.659,0,-63.1844,-61.6792 0|0:24:21,2,1:21:831:2,1:77,40:0,-0.0100824,-67.7941,-3.02157,-65.1009,-71.1205 0|1:8:6,1,1:6:239:1,1:40,40:-1.4889,0,-19.3785,0,-16.3842,-19.3785 dDocent_Contig_10825 127 . C T 106.157 . AB=0.175439;ABP=55.1637;AC=1;AF=0.125;AN=8;AO=10;CIGAR=1X;DP=173;DPB=173;DPRA=1.47414;EPP=24.725;EPPR=356.96;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.981595;PAO=0;PQA=0;PQR=0;PRO=0;QA=324;QR=5369;RO=163;RPL=0;RPP=24.725;RPPR=356.96;RPR=10;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=356.96;SRR=163;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:16:16,0:16:542:0:0:0,-4.81648,-49.102 0/0:73:73,0:73:2456:0:0:0,-21.9752,-221.302 0/1:57:47,10:47:1499:10:324:-12.3147,0,-118.027 0/0:27:27,0:27:872:0:0:0,-8.12781,-78.7774 dDocent_Contig_10827 58 . A G 340.398 . AB=0.246154;ABP=39.3908;AC=3;AF=0.375;AN=8;AO=16;CIGAR=1X;DP=75;DPB=75;DPRA=2.16667;EPP=37.7539;EPPR=131.127;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=643;QR=2347;RO=59;RPL=16;RPP=37.7539;RPPR=131.127;RPR=0;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=59;SRP=131.127;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:10:10,0:10:396:0:0:0,-3.0103,-35.9948 0/1:39:33,6:33:1305:6:243:-10.5078,0,-105.964 0/1:18:11,7:11:442:7:281:-20.2436,0,-34.7169 0/1:8:5,3:5:204:3:119:-8.68626,0,-16.3358 dDocent_Contig_10828 34 . G A 971.82 . AB=0.368421;ABP=8.7247;AC=4;AF=0.5;AN=8;AO=14;CIGAR=1X3M;DP=66;DPB=66;DPRA=3.8;EPP=33.4109;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=564;QR=1254;RO=32;RPL=0;RPP=33.4109;RPPR=72.4974;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:23:16,7,0:16:616:7,0:277,0:-18.3763,0,-48.8474,-23.1927,-50.9546,-73.7553 0|0:5:5,0,0:5:200:0,0:0,0:0,-1.50515,-18.3799,-1.50515,-18.3799,-18.3799 1|1:22:0,13,9:0:0:13,9:491,360:-70.2761,-30.0541,-26.1408,-40.6124,0,-37.9031 0|1:16:11,0,5:11:438:0,5:0,204:-13.9276,-17.2389,-53.2975,0,-36.4631,-34.9579 dDocent_Contig_10829 137 . A C 32.8792 . AB=0.2;ABP=14.7363;AC=1;AF=0.125;AN=8;AO=3;CIGAR=2M1X1M1X;DP=43;DPB=43.4;DPRA=0.535714;EPP=9.52472;EPPR=83.3548;GTI=0;LEN=1;MEANALT=2;MQM=31.3333;MQMR=60;NS=4;NUMALT=2;ODDS=3.46945e-18;PAIRED=0;PAIREDR=0.972973;PAO=0;PQA=0;PQR=0;PRO=0;QA=119;QR=1411;RO=37;RPL=0;RPP=9.52472;RPPR=83.3548;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=83.3548;SRR=37;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:8:4,2,2:4:156:2,2:81,72:-4.6511,-2.03257,-14.2764,0,-9.08807,-12.3152 0|0:22:22,0,0:22:850:0,0:0,0:0,-6.62266,-76.8187,-6.62266,-76.8187,-76.8187 0|0:6:6,0,0:6:221:0,0:0,0:0,-1.80618,-20.2404,-1.80618,-20.2404,-20.2404 0|1:7:5,1,0:5:184:1,0:38,0:-1.50665,0,-14.7083,-3.0118,-15.0093,-18.04 dDocent_Contig_10831 8 . A T 325.11 . AB=0.393939;ABP=6.23461;AC=3;AF=0.375;AN=8;AO=13;CIGAR=1X;DP=63;DPB=63;DPRA=0.366667;EPP=31.2394;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=500;QR=1900;RO=50;RPL=0;RPP=31.2394;RPPR=111.584;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:30:30,0:30:1139:0:0:0,-9.0309,-102.811 0/1:17:7,10:7:271:10:383:-29.7075,0,-19.6388 0/1:12:11,1:11:416:1:39:-0.284205,0,-34.177 0/1:4:2,2:2:74:2:78:-6.19935,0,-5.82131 dDocent_Contig_10832 66 . G A 45.5992 . AB=0.121951;ABP=53.9075;AC=2;AF=0.25;AN=8;AO=5;CIGAR=1X;DP=58;DPB=58;DPRA=2.41176;EPP=13.8677;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=204;QR=2086;RO=53;RPL=5;RPP=13.8677;RPPR=118.098;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:6:6,0:6:242:0:0:0,-1.80618,-22.1569 0/1:24:22,2:22:880:2:82:-0.554958,0,-72.2841 0/0:11:11,0:11:449:0:0:0,-3.31133,-40.7659 0/1:17:14,3:14:515:3:122:-6.25498,0,-41.5556 dDocent_Contig_10833 1 . N G 75.9287 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=80;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:80:-7.59179,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_10834 48 . A T 1243.96 . AB=0.511111;ABP=3.10681;AC=4;AF=0.5;AN=8;AO=46;CIGAR=1X;DP=90;DPB=90;DPRA=0;EPP=102.898;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1750;QR=1694;RO=44;RPL=0;RPP=102.898;RPPR=98.5551;RPR=46;RUN=1;SAF=46;SAP=102.898;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:3,15:3:120:15:571:-46.3039,0,-5.76877 0/1:38:16,22:16:622:22:840:-64.4742,0,-44.8671 0/1:17:14,3:14:546:3:123:-6.34728,0,-44.363 0/1:17:11,6:11:406:6:216:-14.6686,0,-31.757 dDocent_Contig_10835 96 . A C 368.993 . AB=0.404762;ABP=6.31921;AC=3;AF=0.375;AN=8;AO=17;CIGAR=1X;DP=43;DPB=43;DPRA=14;EPP=39.9253;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=592;QR=890;RO=26;RPL=17;RPP=39.9253;RPPR=59.4686;RPR=0;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:9,7:9:306:7:243:-17.3924,0,-23.054 0/1:19:10,9:10:346:9:314:-22.8783,0,-25.7548 0/1:7:6,1:6:203:1:35:-1.39142,0,-16.4948 0/0:1:1,0:1:35:0:0:0,-0.30103,-3.49863 dDocent_Contig_10836 32 . G A 57.6114 . AB=0.230769;ABP=11.1951;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=121;DPB=121;DPRA=1.01667;EPP=18.2106;EPPR=250.558;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.973684;PAO=0;PQA=0;PQR=0;PRO=0;QA=278;QR=4364;RO=114;RPL=0;RPP=18.2106;RPPR=250.558;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=114;SRP=250.558;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:48:44,4:44:1687:4:156:0,-0.0336121,-137.639 0/0:47:47,0:47:1811:0:0:0,-14.1484,-163.206 0/0:13:13,0:13:492:0:0:0,-3.91339,-44.6153 0/1:13:10,3:10:374:3:122:-7.4591,0,-30.0949 dDocent_Contig_10837 119 . G A 30.3344 . AB=0.230769;ABP=11.1951;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X;DP=189;DPB=189;DPRA=0.855346;EPP=22.5536;EPPR=393.875;GTI=0;LEN=1;MEANALT=1;MQM=28.2222;MQMR=41.1833;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=0;PAIREDR=0.266667;PAO=0;PQA=0;PQR=0;PRO=0;QA=312;QR=6178;RO=180;RPL=0;RPP=22.5536;RPPR=393.875;RPR=9;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=393.875;SRR=180;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:72:67,5:67:2293:5:172:0,-10.7878,-174.879 0/0:51:50,1:50:1728:1:35:0,-12.3289,-138.71 0/0:53:53,0:53:1810:0:0:0,-15.9546,-138.805 0/1:13:10,3:10:347:3:105:-4.73201,0,-24.367 dDocent_Contig_10838 14 . C G 61.7453 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=65;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:65:-6.17345,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_10839 24 . C T 1927.04 . AB=0.555556;ABP=6.14687;AC=4;AF=0.5;AN=8;AO=65;CIGAR=1X;DP=117;DPB=117;DPRA=0;EPP=144.156;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.6;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2600;QR=2092;RO=52;RPL=0;RPP=144.156;RPPR=115.927;RPR=65;RUN=1;SAF=65;SAP=144.156;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:35:16,19:16:645:19:765:-58.636,0,-47.8475 0/1:28:6,22:6:244:22:889:-71.8876,0,-13.9098 0/1:37:18,19:18:723:19:747:-56.4078,0,-54.2583 0/1:17:12,5:12:480:5:199:-13.1708,0,-38.4329 dDocent_Contig_10840 40 . C T 885.624 . AB=0.459459;ABP=4.06669;AC=3;AF=0.375;AN=8;AO=34;CIGAR=1X;DP=75;DPB=75;DPRA=24.6667;EPP=76.8404;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1280;QR=1663;RO=41;RPL=0;RPP=76.8404;RPPR=92.0407;RPR=34;RUN=1;SAF=34;SAP=76.8404;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:15,6:15:608:6:230:-14.7448,0,-48.7367 0/1:23:13,10:13:528:10:371:-26.8144,0,-40.9428 0/1:30:12,18:12:486:18:679:-52.4006,0,-35.0597 0/0:1:1,0:1:41:0:0:0,-0.30103,-4.09457 dDocent_Contig_10842 23 . T C 1204.73 . AB=0.440252;ABP=7.9405;AC=2;AF=0.25;AN=8;AO=70;CIGAR=2M1I1M1X;DP=162;DPB=182;DPRA=0;EPP=155.013;EPPR=122.441;GTI=0;LEN=1;MEANALT=3;MQM=21.9857;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=0.709091;PAO=0;PQA=0;PQR=0;PRO=0;QA=2781;QR=2201;RO=55;RPL=0;RPP=155.013;RPPR=122.441;RPR=70;RUN=1;SAF=70;SAP=155.013;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:55:17,6,27,5:17:679:6,27,5:238,1075,195:-37.449,-33.6041,-87.7797,0,-47.0683,-47.8665,-26.5168,-73.5493,-39.961,-81.0025 0|1:64:18,2,34,8:18:721:2,34,8:78,1352,325:-49.4656,-51.898,-110.738,0,-56.468,-49.209,-28.044,-84.517,-32.6249,-85.0942 0|0:40:19,0,9,12:19:760:0,9,12:0,354,483:-34.167,-39.8866,-102.517,-21.5009,-84.1023,-81.3931,0,-62.6969,-44.2953,-59.0845 0|0:3:1,0,0,2:1:41:0,0,2:0,0,81:-6.78264,-7.08367,-10.4694,-7.08367,-10.4694,-10.4694,0,-3.79354,-3.79354,-3.19148 dDocent_Contig_10843 183 . T C 321.839 . AB=0.461538;ABP=3.34437;AC=2;AF=0.25;AN=8;AO=15;CIGAR=1X;DP=148;DPB=148;DPRA=0.4375;EPP=35.5824;EPPR=291.816;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=597;QR=5236;RO=133;RPL=15;RPP=35.5824;RPPR=291.816;RPR=0;RUN=1;SAF=0;SAP=35.5824;SAR=15;SRF=0;SRP=291.816;SRR=133;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:64:64,0:64:2513:0:0:0,-19.2659,-226.31 0/0:58:55,3:55:2188:3:123:0,-5.99495,-185.625 0/1:20:11,9:11:415:9:351:-25.9232,0,-31.6708 0/1:6:3,3:3:120:3:123:-9.65861,0,-9.38151 dDocent_Contig_10844 1 . N G 74.0438 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=78;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:78:-7.4033,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_10845 134 . G C 341.03 . AB=0.309091;ABP=20.4216;AC=4;AF=0.5;AN=8;AO=17;CIGAR=1X;DP=55;DPB=55;DPRA=0;EPP=39.9253;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=628;QR=1372;RO=38;RPL=0;RPP=39.9253;RPPR=85.5263;RPR=17;RUN=1;SAF=0;SAP=39.9253;SAR=17;SRF=0;SRP=85.5263;SRR=38;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:19,5:19:690:5:185:-9.78529,0,-55.2051 0/1:14:12,2:12:424:2:77:-3.09472,0,-34.2797 0/1:5:1,4:1:36:4:144:-11.8082,0,-2.09312 0/1:12:6,6:6:222:6:222:-16.7257,0,-16.7257 dDocent_Contig_10846 7 . A G 2567.33 . AB=0.466135;ABP=5.51052;AC=4;AF=0.5;AN=8;AO=117;CIGAR=1X;DP=251;DPB=251;DPRA=0;EPP=257.073;EPPR=283.13;GTI=0;LEN=1;MEANALT=1.75;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3751;QR=4878;RO=129;RPL=0;RPP=257.073;RPPR=283.13;RPR=117;RUN=1;SAF=117;SAP=257.073;SAR=0;SRF=129;SRP=283.13;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:57:40,16:40:1519:16:479:-26.3362,0,-119.932 0/1:95:48,47:48:1850:47:1403:-97.9119,0,-138.151 0/1:55:24,29:24:865:29:1011:-75.1345,0,-62.0051 0/1:44:17,25:17:644:25:858:-64.7488,0,-45.5132 dDocent_Contig_10848 17 . T A 682.953 . AB=0.589744;ABP=5.73856;AC=2;AF=0.25;AN=8;AO=23;CIGAR=1X;DP=68;DPB=68;DPRA=1.34483;EPP=52.9542;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=920;QR=1785;RO=45;RPL=0;RPP=52.9542;RPPR=100.727;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:7:7,0:7:274:0:0:0,-2.10721,-25.0249 0/0:22:22,0:22:872:0:0:0,-6.62266,-78.7885 0/1:30:9,21:9:354:21:855:-68.2291,0,-23.1883 0/1:9:7,2:7:285:2:65:-3.46047,0,-23.3151 dDocent_Contig_10850 20 . C A 293.838 . AB=0.315789;ABP=14.2105;AC=4;AF=0.5;AN=8;AO=12;CIGAR=1X3M1X3M;DP=46;DPB=46;DPRA=0;EPP=29.068;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=463;QR=1156;RO=30;RPL=0;RPP=29.068;RPPR=68.1545;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:19:12,0,7:12:442:0,7:0,265:-18.4875,-22.0998,-58.2296,0,-36.5042,-34.397 0|1:14:9,0,4:9:357:0,4:0,158:-10.2804,-12.9897,-42.3765,0,-29.3758,-28.1717 0|1:8:7,1,0:7:279:1,0:38,0:-1.38903,0,-23.0735,-3.49624,-23.3745,-26.4887 0|1:5:2,2,1:2:78:2,1:80,40:-5.98789,0,-5.80309,-3.29487,-3.10676,-9.40064 dDocent_Contig_10852 30 . A T 248.137 . AB=0.105263;ABP=28.7251;AC=0;AF=0;AN=8;AO=2;CIGAR=1X1M4X;DP=136;DPB=136;DPRA=0.38;EPP=7.35324;EPPR=254.901;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=72;QR=4595;RO=116;RPL=0;RPP=7.35324;RPPR=254.901;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=116;SRP=254.901;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:55:48,0,7:48:1907:0,7:0,287:-9.64858,-24.098,-181.085,0,-157.395,-155.287 0|0:50:47,0,3:47:1857:0,3:0,121:0,-14.1484,-166.952,-3.77151,-156.977,-156.074 0|0:19:11,2,6:11:439:2,6:72,240:-16.4888,-13.9353,-49.489,0,-30.3204,-34.383 0|0:12:10,0,2:10:392:0,2:0,81:-4.07337,-7.08367,-39.3057,0,-32.6244,-32.0223 dDocent_Contig_10853 10 . T A 614.459 . AB=0.454545;ABP=3.20771;AC=3;AF=0.375;AN=8;AO=18;CIGAR=1X3M2D3M;DP=39;DPB=35;DPRA=1.6;EPP=42.0968;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=727;QR=833;RO=21;RPL=0;RPP=42.0968;RPPR=48.6112;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:5:5,0:5:199:0:0:0,-1.50515,-18.2889 0|0:10:10,0:10:396:0:0:0,-3.0103,-35.9977 0|1:11:6,5:6:238:5:199:-14.9767,0,-18.483 1|1:13:0,13:0:0:13:528:-47.8671,-3.91339,0 dDocent_Contig_10854 15 . A G 9591.38 . AB=0.0484721;ABP=1683.55;AC=0;AF=0;AN=8;AO=46;CIGAR=2X3M1X;DP=949;DPB=943.333;DPRA=0;EPP=102.898;EPPR=673.995;GTI=0;LEN=1;MEANALT=11.5;MQM=59.2826;MQMR=60;NS=4;NUMALT=6;ODDS=0;PAIRED=0.847826;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1788;QR=12211;RO=309;RPL=0;RPP=102.898;RPPR=673.995;RPR=46;RUN=1;SAF=46;SAP=102.898;SAR=0;SRF=309;SRP=673.995;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:352:127,11,11,11,14,37,122:127:5023:11,11,11,14,37,122:431,438,427,537,1484,4763:-353.259,-356.05,-766.101,-355.423,-733.346,-765.474,-356.409,-734.332,-733.705,-766.461,-347.451,-725.373,-724.747,-725.733,-756.599,-269.222,-647.145,-646.519,-647.505,-638.547,-671.447,0,-377.922,-377.296,-378.282,-369.324,-291.095,-376.637 0|0:319:110,22,11,10,14,15,93:110:4350:22,11,10,14,15,93:847,443,400,555,609,3707:-272.148,-235.731,-587.082,-268.748,-557.192,-623.411,-272.311,-560.754,-593.772,-627.274,-259.602,-548.046,-581.063,-584.626,-613.362,-255.034,-543.478,-576.495,-580.058,-567.35,-608.493,0,-288.446,-321.463,-325.026,-312.317,-307.749,-329.98 0|0:194:50,3,7,3,12,17,82:50:1963:3,7,3,12,17,82:120,276,119,468,688,3204:-248.303,-253.469,-414.005,-240.65,-392.204,-399.982,-253.558,-405.112,-392.293,-414.094,-224.893,-376.447,-363.628,-376.536,-382.719,-206.625,-358.18,-345.361,-358.269,-329.603,-362.947,0,-151.552,-138.734,-151.642,-122.976,-104.708,-136.753 0|0:84:22,4,6,8,6,4,31:22:875:4,6,8,6,4,31:162,241,323,228,163,1210:-92.8264,-86.09,-156.927,-79.589,-138.271,-149.824,-72.8203,-131.503,-125.002,-142.453,-80.7558,-139.437,-132.936,-126.168,-150.99,-86.0009,-144.683,-138.182,-131.414,-139.348,-156.838,0,-58.6806,-52.1798,-45.4111,-53.3469,-58.5914,-62.7075 dDocent_Contig_10855 81 . C T 33.0281 . AB=0.148148;ABP=32.0437;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=78;DPB=78;DPRA=1.58824;EPP=11.6962;EPPR=163.699;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=142;QR=2562;RO=74;RPL=4;RPP=11.6962;RPPR=163.699;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=74;SRP=163.699;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:43:43,0:43:1484:0:0:0,-12.9443,-133.856 0/1:27:23,4:23:798:4:142:-5.0014,0,-64.0121 0/0:5:5,0:5:175:0:0:0,-1.50515,-16.0937 0/0:3:3,0:3:105:0:0:0,-0.90309,-9.79616 dDocent_Contig_10856 129 . C T 267.998 . AB=0.4;ABP=5.61607;AC=1;AF=0.125;AN=8;AO=13;CIGAR=1X;DP=100;DPB=100;DPRA=2.44828;EPP=31.2394;EPPR=191.928;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=445;QR=3002;RO=87;RPL=0;RPP=31.2394;RPPR=191.928;RPR=13;RUN=1;SAF=0;SAP=31.2394;SAR=13;SRF=0;SRP=191.928;SRR=87;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:18,12:18:629:12:410:-28.1977,0,-47.9034 0/0:24:24,0:24:848:0:0:0,-7.22472,-76.6392 0/0:41:40,1:40:1351:1:35:0,-8.8436,-118.386 0/0:5:5,0:5:174:0:0:0,-1.50515,-16.002 dDocent_Contig_10857 168 . C A 2053.3 . AB=0.09375;ABP=94.755;AC=0;AF=0;AN=8;AO=6;CIGAR=1X3M1X;DP=239;DPB=239;DPRA=0;EPP=16.0391;EPPR=328.731;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=226;QR=5787;RO=150;RPL=6;RPP=16.0391;RPPR=328.731;RPR=0;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=328.731;SRR=150;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:82:70,0,12:70:2680:0,12:0,477:-18.5976,-39.6697,-259.566,0,-220.291,-216.679 0|0:64:23,6,34:23:896:6,34:226,1303:-100.001,-88.4067,-160.244,0,-55.1375,-63.4188 0|0:69:37,0,32:37:1431:0,32:0,1207:-88.1386,-99.2767,-216.809,0,-117.913,-108.28 0|0:24:20,0,4:20:780:0,4:0,143:-5.99113,-12.0117,-76.1541,0,-64.505,-63.3008 dDocent_Contig_10858 11 . C A 119.252 . AB=0.173077;ABP=51.2838;AC=4;AF=0.5;AN=8;AO=9;CIGAR=1X;DP=52;DPB=52;DPRA=0;EPP=22.5536;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.813953;PAO=0;PQA=0;PQR=0;PRO=0;QA=358;QR=1706;RO=43;RPL=0;RPP=22.5536;RPPR=96.3836;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:16,2:16:646:2:76:-1.795,0,-53.0557 0/1:15:13,2:13:513:2:79:-2.98179,0,-41.9942 0/1:10:9,1:9:350:1:41:-1.08427,0,-28.8437 0/1:9:5,4:5:197:4:162:-12.2577,0,-15.3956 dDocent_Contig_10859 19 . G A 5451.23 . AB=0.693878;ABP=67.0023;AC=5;AF=0.625;AN=8;AO=172;CIGAR=1X1M;DP=236;DPB=236;DPRA=0;EPP=376.504;EPPR=120.27;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.982558;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6824;QR=2091;RO=54;RPL=0;RPP=376.504;RPPR=120.27;RPR=172;RUN=1;SAF=172;SAP=376.504;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:83:15,2,66:15:602:2,66:82,2618:-210.959,-208.706,-257.707,0,-42.8247,-29.7259 1|1:40:2,1,36:2:75:1,36:41,1437:-122.444,-119.662,-125.502,-4.7124,-7.4472,0 0|1:62:19,6,37:19:704:6,37:237,1469:-115.209,-101.428,-157.199,0,-38.0601,-46.4287 0|1:51:18,0,33:18:710:0,33:0,1300:-101.908,-107.327,-165.744,0,-58.8108,-48.8769 dDocent_Contig_10860 153 . C G 41.9921 . AB=0.4;ABP=3.44459;AC=1;AF=0.125;AN=8;AO=2;CIGAR=2X;DP=45;DPB=45;DPRA=0.375;EPP=7.35324;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=78;QR=1684;RO=43;RPL=0;RPP=7.35324;RPPR=96.3836;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=96.3836;SRR=43;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:9:9,0:9:365:0:0:0,-2.70927,-33.2151 0|0:18:18,0:18:700:0:0:0,-5.41854,-63.3187 0|0:13:13,0:13:498:0:0:0,-3.91339,-45.1565 0|1:5:3,2:3:121:2:78:-5.89815,0,-9.77484 dDocent_Contig_10861 98 . N C 59.6948 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=2X;DP=2;DPB=4;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=2;PQA=54;PQR=0;PRO=0;QA=66;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. 1|1:2:0,2:0:0:2:66:-5.96839,-0.60206,0 dDocent_Contig_10862 16 . A G 2388.62 . AB=0.560976;ABP=5.65844;AC=5;AF=0.625;AN=8;AO=75;CIGAR=1X;DP=111;DPB=111;DPRA=0;EPP=165.871;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.64;PAIREDR=0.972222;PAO=0;PQA=0;PQR=0;PRO=0;QA=2974;QR=1451;RO=36;RPL=0;RPP=165.871;RPPR=81.1833;RPR=75;RUN=1;SAF=75;SAP=165.871;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:46:19,27:19:764:27:1076:-83.275,0,-55.233 1/1:29:0,29:0:0:29:1130:-101.977,-8.72987,0 0/1:17:7,10:7:285:10:405:-31.6929,0,-20.9069 0/1:19:10,9:10:402:9:363:-27.3145,0,-30.8187 dDocent_Contig_10863 114 . A G 535.938 . AB=0.396825;ABP=8.83536;AC=3;AF=0.375;AN=8;AO=25;CIGAR=1X;DP=69;DPB=69;DPRA=3.5;EPP=57.2971;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=39.8864;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.568182;PAO=0;PQA=0;PQR=0;PRO=0;QA=855;QR=1530;RO=44;RPL=0;RPP=57.2971;RPPR=98.5551;RPR=25;RUN=1;SAF=0;SAP=57.2971;SAR=25;SRF=0;SRP=98.5551;SRR=44;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:33:17,16:17:592:16:541:-39.0762,0,-26.0459 0/1:20:15,5:15:520:5:175:-10.0731,0,-32.4584 0/1:10:6,4:6:209:4:139:-9.84239,0,-7.69707 0/0:6:6,0:6:209:0:0:0,-1.80618,-16.7681 dDocent_Contig_10865 101 . N A 157.045 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=6;CIGAR=5X10I5X;DP=7;DPB=13.9;DPRA=3;EPP=16.0391;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=27.5;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=223;QR=0;RO=0;RPL=0;RPP=16.0391;RPPR=0;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:1:0,0:0:0:0:0:0,0,0 1|1:4:0,4:0:0:4:149:-9.39576,-1.20412,0 1|1:2:0,2:0:0:2:74:-5.70522,-0.60206,0 .:.:.:.:.:.:.:. dDocent_Contig_10866 141 . C G 267.785 . AB=0;ABP=0;AC=2;AF=0.25;AN=8;AO=8;CIGAR=1X;DP=42;DPB=42;DPRA=0.705882;EPP=20.3821;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=287;QR=1372;RO=34;RPL=0;RPP=20.3821;RPPR=76.8404;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=76.8404;SRR=34;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:8:0,8:0:0:8:287:-26.1765,-2.40824,0 0/0:15:15,0:15:610:0:0:0,-4.51545,-55.2372 0/0:11:11,0:11:436:0:0:0,-3.31133,-39.5939 0/0:8:8,0:8:326:0:0:0,-2.40824,-29.7097 dDocent_Contig_10867 48 . A T 295.18 . AB=0.176471;ABP=95.7449;AC=4;AF=0.5;AN=8;AO=18;CIGAR=1X;DP=102;DPB=102;DPRA=0;EPP=42.0968;EPPR=185.414;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=734;QR=3353;RO=84;RPL=0;RPP=42.0968;RPPR=185.414;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=84;SRP=185.414;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:32,4:32:1289:4:162:-4.12988,0,-105.434 0/1:43:35,8:35:1378:8:326:-16.7656,0,-111.336 0/1:19:16,3:16:645:3:123:-5.74522,0,-52.6653 0/1:4:1,3:1:41:3:123:-10.2607,0,-2.89045 dDocent_Contig_10868 33 . A G 386.912 . AB=0.451613;ABP=3.64073;AC=2;AF=0.25;AN=8;AO=15;CIGAR=1X;DP=69;DPB=69;DPRA=0.625;EPP=35.5824;EPPR=120.27;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=0.666667;PAIREDR=0.87037;PAO=0;PQA=0;PQR=0;PRO=0;QA=604;QR=2172;RO=54;RPL=0;RPP=35.5824;RPPR=120.27;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:6,11:6:243:11:440:-34.8379,0,-17.1301 0/0:24:24,0:24:968:0:0:0,-7.22472,-87.4196 0/0:14:13,1:13:512:1:41:0,-0.119853,-42.332 0/1:14:11,3:11:449:3:123:-7.25037,0,-36.5515 dDocent_Contig_10869 23 . G A 87.3397 . AB=0.155556;ABP=49.3833;AC=2;AF=0.25;AN=8;AO=8;CIGAR=1X;DP=85;DPB=85;DPRA=1.84615;EPP=20.3821;EPPR=170.214;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=314;QR=3072;RO=77;RPL=0;RPP=20.3821;RPPR=170.214;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=77;SRP=170.214;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:8,1:8:318:1:41:-1.3853,0,-26.2764 0/1:36:30,6:30:1199:6:232:-10.4073,0,-97.3473 0/0:13:13,0:13:515:0:0:0,-3.91339,-46.6938 0/0:27:26,1:26:1040:1:41:0,-4.03324,-89.7958 dDocent_Contig_10870 14 . C A 30.7078 . AB=0.2;ABP=10.8276;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X;DP=96;DPB=96;DPRA=0.348837;EPP=7.35324;EPPR=207.129;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=3768;RO=94;RPL=0;RPP=7.35324;RPPR=207.129;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=94;SRP=207.129;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:43:43,0:43:1729:0:0:0,-12.9443,-155.823 0/0:27:27,0:27:1077:0:0:0,-8.12781,-97.2175 0/0:16:16,0:16:648:0:0:0,-4.81648,-58.6519 0/1:10:8,2:8:314:2:82:-4.76938,0,-25.6119 dDocent_Contig_10871 97 . T C 250.534 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=8;CIGAR=2X;DP=8;DPB=8;DPRA=0;EPP=20.3821;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=1.69407e-21;PAIRED=0.375;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=262;QR=0;RO=0;RPL=8;RPP=20.3821;RPPR=0;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:1:0,1:0:0:1:35:-3.49863,-0.30103,0 1|1:6:0,6:0:0:6:194:-17.777,-1.80618,0 1|1:1:0,1:0:0:1:33:-3.29913,-0.30103,0 .:.:.:.:.:.:.:. dDocent_Contig_10872 85 . C A 476.087 . AB=0.0540541;ABP=66.922;AC=0;AF=0;AN=8;AO=2;CIGAR=11M4I1X12M1X;DP=103;DPB=106.16;DPRA=0;EPP=7.35324;EPPR=76.8404;GTI=0;LEN=1;MEANALT=10;MQM=60;MQMR=60;NS=4;NUMALT=7;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=25;QR=1183;RO=34;RPL=2;RPP=7.35324;RPPR=76.8404;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:26:17,0,0,1,2,0,2,0:17:595:0,0,1,2,0,2,0:0,0,30,79,0,78,0:-1.41752,-6.53503,-54.994,-6.53503,-54.994,-54.994,-4.13337,-52.5963,-52.5963,-52.2953,0,-48.4871,-48.4871,-46.0893,-47.8851,-6.53503,-54.994,-54.994,-52.5963,-48.4871,-54.994,-0.0906192,-48.5767,-48.5767,-46.179,-42.0689,-48.5767,-47.9747,-6.53503,-54.994,-54.994,-52.5963,-48.4871,-54.994,-48.5767,-54.994 0|0:37:5,2,4,6,4,5,7,0:5:175:2,4,6,4,5,7,0:25,119,210,151,183,267,0:-23.2631,-23.1326,-36.7732,-15.2656,-27.8745,-28.3059,-7.67736,-20.2887,-12.4211,-20.1178,-12.3831,-24.9931,-17.1262,-9.53822,-25.4251,-9.80366,-22.4144,-14.5471,-6.9587,-11.6646,-22.5451,-2.84553,-15.4587,-7.59008,0,-4.70671,-2.12674,-14.987,-24.7683,-37.3752,-29.51,-21.924,-26.6293,-24.0502,-17.0942,-39.0123 0|0:27:6,0,0,1,2,3,1,9:6:203:0,0,1,2,3,1,9:0,0,40,78,116,40,255:-18.4293,-20.2354,-36.7037,-20.2354,-36.7037,-36.7037,-16.9347,-33.4047,-33.4047,-33.1037,-13.8129,-30.2847,-30.2847,-26.9851,-29.6827,-10.6905,-27.1645,-27.1645,-23.8645,-20.7435,-26.2614,-16.9347,-33.4047,-33.4047,-30.1054,-26.9851,-23.8645,-33.1037,0,-16.4735,-16.4735,-13.1729,-10.0513,-6.92902,-13.1729,-13.7643 0|0:13:6,0,0,0,4,0,1,0:6:210:0,0,0,4,0,1,0:0,0,0,158,0,40,0:-11.2648,-13.071,-30.1605,-13.071,-30.1605,-30.1605,-13.071,-30.1605,-30.1605,-30.1605,0,-17.1373,-17.1373,-17.1373,-15.9332,-13.071,-30.1605,-30.1605,-30.1605,-17.1373,-30.1605,-9.76637,-26.8609,-26.8609,-26.8609,-13.8328,-26.8609,-26.5599,-13.071,-30.1605,-30.1605,-30.1605,-17.1373,-30.1605,-26.8609,-30.1605 dDocent_Contig_10873 86 . A G 312.476 . AB=0.274194;ABP=30.4689;AC=3;AF=0.375;AN=8;AO=18;CIGAR=1X;DP=74;DPB=74;DPRA=0;EPP=42.0968;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=639;QR=1958;RO=56;RPL=18;RPP=42.0968;RPPR=124.613;RPR=0;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:12:11,1:11:376:1:36:0,-0.0140849,-30.5693 0/1:34:24,10:24:844:10:355:-22.0555,0,-66.0435 0/1:17:14,3:14:495:3:105:-4.67858,0,-39.7664 0/1:11:7,4:7:243:4:143:-9.91012,0,-18.8966 dDocent_Contig_10874 34 . G T 1559.89 . AB=0.430769;ABP=8.42228;AC=4;AF=0.5;AN=8;AO=56;CIGAR=1X;DP=130;DPB=130;DPRA=0;EPP=124.613;EPPR=163.699;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2235;QR=2920;RO=74;RPL=0;RPP=124.613;RPPR=163.699;RPR=56;RUN=1;SAF=56;SAP=124.613;SAR=0;SRF=74;SRP=163.699;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:50:25,25:25:959:25:987:-74.0772,0,-71.5463 0/1:40:20,20:20:811:20:809:-61.0844,0,-61.2642 0/1:19:12,7:12:480:7:275:-19.397,0,-37.8309 0/1:21:17,4:17:670:4:164:-8.82827,0,-54.305 dDocent_Contig_10875 27 . A G 97.6383 . AB=0.120482;ABP=106.849;AC=1;AF=0.125;AN=8;AO=10;CIGAR=1X;DP=226;DPB=226;DPRA=1.74126;EPP=24.725;EPPR=472.048;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=401;QR=8545;RO=216;RPL=0;RPP=24.725;RPPR=472.048;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=216;SRP=472.048;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:88:88,0:88:3449:0:0:0,-26.4906,-310.46 0/1:83:73,10:73:2899:10:401:-11.4628,0,-236.018 0/0:35:35,0:35:1404:0:0:0,-10.536,-126.615 0/0:20:20,0:20:793:0:0:0,-6.0206,-71.6908 dDocent_Contig_10876 82 . A T 61.4509 . AB=0.148148;ABP=61.0771;AC=2;AF=0.25;AN=8;AO=8;CIGAR=1X;DP=90;DPB=90;DPRA=1.5;EPP=20.3821;EPPR=181.071;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.97561;PAO=0;PQA=0;PQR=0;PRO=0;QA=279;QR=2800;RO=82;RPL=8;RPP=20.3821;RPPR=181.071;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=82;SRP=181.071;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:11,0:11:380:0:0:0,-3.31133,-34.5328 0/0:25:25,0:25:853:0:0:0,-7.52575,-77.085 0/1:36:31,5:31:1048:5:174:-5.16487,0,-83.7901 0/1:18:15,3:15:519:3:105:-4.37762,0,-41.619 dDocent_Contig_10877 88 . G T 39.5502 . AB=0.148148;ABP=32.0437;AC=2;AF=0.25;AN=8;AO=4;CIGAR=1X;DP=39;DPB=39;DPRA=2.25;EPP=11.6962;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=146;QR=1255;RO=35;RPL=4;RPP=11.6962;RPPR=79.0118;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:11,1:11:390:1:37:-0.0854694,0,-31.8231 0/1:15:12,3:12:425:3:109:-5.65255,0,-34.0697 0/0:4:4,0:4:146:0:0:0,-1.20412,-13.4977 0/0:8:8,0:8:294:0:0:0,-2.40824,-26.8124 dDocent_Contig_10878 8 . A G 113.445 . AB=0.333333;ABP=6.62942;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=46;DPB=46;DPRA=1.45161;EPP=13.8677;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=191;QR=1537;RO=41;RPL=0;RPP=13.8677;RPPR=92.0407;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:16:16,0:16:584:0:0:0,-4.81648,-52.8844 0/0:2:2,0:2:78:0:0:0,-0.60206,-7.40347 0/1:15:10,5:10:380:5:191:-13.0432,0,-30.0367 0/0:13:13,0:13:495:0:0:0,-3.91339,-44.8947 dDocent_Contig_10879 26 . A T 52.5046 . AB=0.1875;ABP=16.582;AC=1;AF=0.125;AN=8;AO=3;CIGAR=2X;DP=48;DPB=48;DPRA=1.5;EPP=9.52472;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.933333;PAO=0;PQA=0;PQR=0;PRO=0;QA=123;QR=1804;RO=45;RPL=0;RPP=9.52472;RPPR=100.727;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:16:13,3:13:515:3:123:-6.64831,0,-41.88 0|0:22:22,0:22:884:0:0:0,-6.62266,-79.8692 0|0:6:6,0:6:243:0:0:0,-1.80618,-22.248 0|0:4:4,0:4:162:0:0:0,-1.20412,-14.9667 dDocent_Contig_10880 27 . G T 139.265 . AB=0.26087;ABP=14.4341;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=48;DPB=48;DPRA=2.76;EPP=16.0391;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=243;QR=1625;RO=42;RPL=0;RPP=16.0391;RPPR=94.2121;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:17,6:17:657:6:243:-15.3243,0,-52.5395 0/0:14:14,0:14:540:0:0:0,-4.21442,-48.9417 0/0:8:8,0:8:312:0:0:0,-2.40824,-28.4441 0/0:3:3,0:3:116:0:0:0,-0.90309,-10.817 dDocent_Contig_10881 33 . A G 133.81 . AB=0.166667;ABP=49.335;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=202;DPB=202;DPRA=0.935065;EPP=20.3821;EPPR=419.933;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=324;QR=7638;RO=192;RPL=0;RPP=20.3821;RPPR=419.933;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=192;SRP=419.933;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:80:80,0:80:3191:0:0:0,-24.0824,-287.262 0/1:48:40,8:40:1601:8:324:-15.08,0,-129.872 0/0:45:44,0:44:1740:0:0:0,-13.2453,-156.432 0/0:29:28,0:28:1106:0:0:0,-8.42884,-99.4335 dDocent_Contig_10882 68 . G T 409.18 . AB=0.2625;ABP=42.2054;AC=3;AF=0.375;AN=8;AO=21;CIGAR=1X;DP=85;DPB=85;DPRA=5.33333;EPP=48.6112;EPPR=141.985;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=771;QR=2363;RO=64;RPL=21;RPP=48.6112;RPPR=141.985;RPR=0;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=64;SRP=141.985;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:15,4:15:538:4:132:-6.48588,0,-43.0214 0/1:51:36,15:36:1341:15:569:-36.191,0,-105.623 0/1:10:8,2:8:293:2:70:-3.63645,0,-23.7095 0/0:5:5,0:5:191:0:0:0,-1.50515,-17.5583 dDocent_Contig_10883 7 . A G 693.532 . AB=0.293233;ABP=52.3991;AC=3;AF=0.375;AN=8;AO=40;CIGAR=1X;DP=149;DPB=149;DPRA=0;EPP=89.8692;EPPR=237.529;GTI=0;LEN=1;MEANALT=1.25;MQM=59.85;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1304;QR=4148;RO=108;RPL=0;RPP=89.8692;RPPR=237.529;RPR=40;RUN=1;SAF=40;SAP=89.8692;SAR=0;SRF=108;SRP=237.529;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:46:23,23:23:883:23:740:-53.0415,0,-65.9425 0/1:57:48,9:48:1839:9:302:-10.3408,0,-148.602 0/1:30:22,7:22:850:7:223:-11.3687,0,-67.8178 0/0:16:15,1:15:576:1:39:0,-0.920801,-48.287 dDocent_Contig_10884 49 . A G 246.504 . AB=0.20339;ABP=48.096;AC=2;AF=0.25;AN=8;AO=12;CIGAR=1X;DP=67;DPB=67;DPRA=7.375;EPP=29.068;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=491;QR=2196;RO=55;RPL=0;RPP=29.068;RPPR=122.441;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:37:27,10:27:1089:10:409:-26.0325,0,-87.1585 0/1:22:20,2:20:783:2:82:-1.15702,0,-64.1673 0/0:7:7,0:7:283:0:0:0,-2.10721,-25.843 0/0:1:1,0:1:41:0:0:0,-0.30103,-4.09457 dDocent_Contig_10885 7 . A G 74.6116 . AB=0.136986;ABP=86.5674;AC=2;AF=0.25;AN=8;AO=12;CIGAR=1X;DP=167;DPB=167;DPRA=1.25714;EPP=29.068;EPPR=339.589;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=411;QR=5916;RO=155;RPL=0;RPP=29.068;RPPR=339.589;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=155;SRP=339.589;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:59:57,2:57:2191:2:54:0,-12.6315,-192.286 0/1:63:56,7:56:2134:7:247:-3.60617,0,-173.324 0/0:35:35,0:35:1324:0:0:0,-10.536,-119.448 0/1:10:7,3:7:267:3:110:-7.25025,0,-21.3815 dDocent_Contig_10886 38 . A G 677.465 . AB=0.258929;ABP=59.5461;AC=3;AF=0.375;AN=8;AO=30;CIGAR=1X;DP=126;DPB=126;DPRA=0;EPP=68.1545;EPPR=211.472;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1197;QR=3791;RO=96;RPL=0;RPP=68.1545;RPPR=211.472;RPR=30;RUN=1;SAF=30;SAP=68.1545;SAR=0;SRF=96;SRP=211.472;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:51:29,22:29:1134:22:896:-65.5925,0,-86.9831 0/1:44:39,5:39:1542:5:204:-5.49871,0,-125.773 0/0:14:13,1:13:520:1:25:0,-1.71456,-44.6452 0/1:17:15,2:15:595:2:72:-1.71681,0,-48.7651 dDocent_Contig_10887 7 . A C 1560.98 . AB=0.486957;ABP=3.18024;AC=3;AF=0.375;AN=8;AO=58;CIGAR=1X;DP=140;DPB=140;DPRA=0;EPP=128.956;EPPR=181.071;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2246;QR=3137;RO=82;RPL=0;RPP=128.956;RPPR=181.071;RPR=58;RUN=1;SAF=58;SAP=128.956;SAR=0;SRF=82;SRP=181.071;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:55:35,20:35:1331:20:779:-53.8813,0,-103.519 0/1:50:17,33:17:657:33:1274:-99.8988,0,-44.4156 0/0:25:23,2:23:881:2:78:0,-0.122277,-72.2068 0/1:10:7,3:7:268:3:115:-7.71459,0,-21.4731 dDocent_Contig_10889 55 . T A 1665.09 . AB=0.5;ABP=3.0103;AC=4;AF=0.5;AN=8;AO=58;CIGAR=1X;DP=116;DPB=116;DPRA=0;EPP=128.956;EPPR=128.956;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.982759;PAO=0;PQA=0;PQR=0;PRO=0;QA=2303;QR=2306;RO=58;RPL=58;RPP=128.956;RPPR=128.956;RPR=0;RUN=1;SAF=58;SAP=128.956;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:39:26,13:26:1053:13:523:-35.6765,0,-83.3187 0/1:50:12,38:12:483:38:1496:-119.836,0,-28.7697 0/1:20:14,6:14:549:6:244:-16.3182,0,-43.7242 0/1:7:6,1:6:221:1:40:-1.88847,0,-18.1315 dDocent_Contig_10891 9 . A T 837.621 . AB=0.428571;ABP=6.42261;AC=4;AF=0.5;AN=8;AO=33;CIGAR=1X;DP=77;DPB=77;DPRA=0;EPP=58.3499;EPPR=90.0666;GTI=0;LEN=1;MEANALT=1;MQM=59.697;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.848485;PAIREDR=0.954545;PAO=0;PQA=0;PQR=0;PRO=0;QA=1255;QR=1642;RO=44;RPL=0;RPP=74.6689;RPPR=98.5551;RPR=33;RUN=1;SAF=31;SAP=58.3499;SAR=2;SRF=43;SRP=90.0666;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:15,6:15:556:6:218:-13.6208,0,-44.0529 0/1:27:10,17:10:381:17:659:-51.5192,0,-26.5165 0/1:8:3,5:3:113:5:185:-14.6003,0,-8.13073 0/1:21:16,5:16:592:5:193:-11.4197,0,-47.284 dDocent_Contig_10892 37 . A T 596.537 . AB=0.338028;ABP=19.1893;AC=2;AF=0.25;AN=8;AO=26;CIGAR=1X;DP=127;DPB=127;DPRA=1.29487;EPP=59.4686;EPPR=222.329;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.8614;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.990099;PAO=0;PQA=0;PQR=0;PRO=0;QA=1001;QR=3975;RO=101;RPL=0;RPP=59.4686;RPPR=222.329;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=101;SRP=222.329;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:61:38,23:38:1484:23:879:-61.0386,0,-115.445 0/0:26:26,0:26:1026:0:0:0,-7.82678,-92.6293 0/0:30:28,2:28:1107:2:81:0,-1.34517,-92.2039 0/1:10:9,1:9:358:1:41:-1.08427,0,-29.5727 dDocent_Contig_10893 22 . T G 7817.5 . AB=0.0845666;ABP=712.063;AC=5;AF=0.625;AN=8;AO=40;CIGAR=1X4M1D12M;DP=473;DPB=436.056;DPRA=0;EPP=89.8692;EPPR=176.728;GTI=0;LEN=1;MEANALT=6.25;MQM=60;MQMR=60;NS=4;NUMALT=4;ODDS=1.11022e-16;PAIRED=0.7;PAIREDR=0.775;PAO=0;PQA=0;PQR=0;PRO=0;QA=1541;QR=3149;RO=80;RPL=0;RPP=89.8692;RPPR=176.728;RPR=40;RUN=1;SAF=40;SAP=89.8692;SAR=0;SRF=80;SRP=176.728;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:112:14,9,55,5,27:14:547:9,55,5,27:345,2094,200,1034:-207.404,-183.303,-225.564,-39.8677,-56.5239,-68.2832,-195.143,-211.797,-68.3632,-238.608,-126.779,-143.434,0,-155.274,-163.622 0|1:163:35,0,92,7,21:35:1386:0,92,7,21:0,3502,266,811:-276.69,-287.226,-401.307,0,-114.083,-86.3885,-265.413,-379.494,-92.2714,-377.387,-220.629,-334.71,-47.4885,-312.897,-328.388 0|1:114:21,0,53,16,22:21:824:0,53,16,22:0,2016,610,827:-159.02,-165.341,-233.111,0,-67.7736,-51.819,-115.312,-183.082,-17.7445,-178.266,-97.608,-165.379,-0.0424294,-115.35,-158.756 1|1:84:10,2,46,12,11:10:392:2,46,12,11:76,1744,465,423:-145.945,-142.722,-174.359,-5.96136,-31.9705,-24.3563,-110.755,-136.761,0,-139.382,-114.234,-140.241,-3.48077,-108.273,-143.162 dDocent_Contig_10894 74 . C T 429.033 . AB=0.809524;ABP=20.4855;AC=1;AF=0.125;AN=8;AO=17;CIGAR=1X;DP=114;DPB=114;DPRA=0.677419;EPP=39.9253;EPPR=211.472;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=559;QR=3243;RO=96;RPL=17;RPP=39.9253;RPPR=211.472;RPR=0;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=96;SRP=211.472;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:4,17:4:138:17:559:-44.3012,0,-6.43877 0/0:33:33,0:33:1117:0:0:0,-9.93399,-100.834 0/0:35:34,0:34:1152:0:0:0,-10.235,-103.914 0/0:25:25,0:25:836:0:0:0,-7.52575,-75.5501 dDocent_Contig_10895 24 . T C 40.0947 . AB=0.333333;ABP=4.45795;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X;DP=54;DPB=54;DPRA=0.375;EPP=3.0103;EPPR=83.8559;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.788462;PAO=0;PQA=0;PQR=0;PRO=0;QA=76;QR=1898;RO=52;RPL=0;RPP=7.35324;RPPR=115.927;RPR=2;RUN=1;SAF=1;SAP=3.0103;SAR=1;SRF=48;SRP=83.8559;SRR=4;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:6:4,2:4:155:2:76:-5.40736,0,-12.5182 0/0:16:16,0:16:578:0:0:0,-4.81648,-52.3427 0/0:25:25,0:25:910:0:0:0,-7.52575,-82.199 0/0:7:7,0:7:255:0:0:0,-2.10721,-23.2971 dDocent_Contig_10896 18 . C T 586.676 . AB=0.268817;ABP=46.1829;AC=2;AF=0.25;AN=8;AO=25;CIGAR=1X;DP=209;DPB=209;DPRA=0.801724;EPP=57.2971;EPPR=402.561;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.956522;PAO=0;PQA=0;PQR=0;PRO=0;QA=993;QR=7333;RO=184;RPL=0;RPP=57.2971;RPPR=402.561;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=184;SRP=402.561;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:38:38,0:38:1531:0:0:0,-11.4391,-138.021 0/0:78:78,0:78:3102:0:0:0,-23.4803,-279.259 0/1:63:45,18:45:1780:18:719:-46.0714,0,-141.454 0/1:30:23,7:23:920:7:274:-15.9942,0,-74.0734 dDocent_Contig_10897 156 . C G 960.848 . AB=0.372549;ABP=10.206;AC=5;AF=0.625;AN=8;AO=33;CIGAR=1X;DP=65;DPB=65;DPRA=0;EPP=74.6689;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1282;QR=1217;RO=32;RPL=0;RPP=74.6689;RPPR=72.4974;RPR=33;RUN=1;SAF=0;SAP=74.6689;SAR=33;SRF=0;SRP=72.4974;SRR=32;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:14:0,14:0:0:14:542:-49.1257,-4.21442,0 0/1:12:8,4:8:295:4:156:-10.8049,0,-23.287 0/1:22:14,8:14:538:8:311:-21.7317,0,-42.1411 0/1:17:10,7:10:384:7:273:-19.8205,0,-29.7986 dDocent_Contig_10898 124 . A G 204.15 . AB=0.30303;ABP=14.1309;AC=1;AF=0.125;AN=8;AO=10;CIGAR=1X;DP=57;DPB=57;DPRA=4.125;EPP=24.725;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=349;QR=1660;RO=47;RPL=0;RPP=24.725;RPPR=105.07;RPR=10;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=105.07;SRR=47;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:33:23,10:23:817:10:349:-21.8128,0,-63.9174 0/0:14:14,0:14:489:0:0:0,-4.21442,-44.3382 0/0:7:7,0:7:244:0:0:0,-2.10721,-22.2994 0/0:3:3,0:3:110:0:0:0,-0.90309,-10.261 dDocent_Contig_10899 144 . A C 65.9053 . AB=0.217391;ABP=18.9659;AC=2;AF=0.25;AN=8;AO=5;CIGAR=1X;DP=49;DPB=49;DPRA=0.884615;EPP=13.8677;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=180;QR=1538;RO=44;RPL=0;RPP=13.8677;RPPR=98.5551;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=98.5551;SRR=44;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:17:17,0:17:590:0:0:0,-5.11751,-53.4239 0/1:16:13,3:13:454:3:108:-5.25869,0,-36.3747 0/1:7:5,2:5:174:2:72:-4.72951,0,-13.8944 0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1426 dDocent_Contig_10900 9 . A T 505.432 . AB=0.68;ABP=10.0459;AC=1;AF=0.125;AN=8;AO=17;CIGAR=1X;DP=43;DPB=43;DPRA=4.16667;EPP=39.9253;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=657;QR=985;RO=26;RPL=0;RPP=39.9253;RPPR=59.4686;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:8,17:8:308:17:657:-51.941,0,-20.5566 0/0:8:8,0:8:300:0:0:0,-2.40824,-27.3539 0/0:7:7,0:7:269:0:0:0,-2.10721,-24.5747 0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0741 dDocent_Contig_10901 10 . G T 41.0122 . AB=0.116279;ABP=58.0041;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=104;DPB=104;DPRA=1.26087;EPP=16.0391;EPPR=190.555;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=245;QR=3892;RO=98;RPL=0;RPP=16.0391;RPPR=215.815;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=95;SRP=190.555;SRR=3;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:18:18,0:18:727:0:0:0,-5.41854,-65.7548 0/0:28:28,0:28:1122:0:0:0,-8.42884,-101.26 0/1:43:38,5:38:1478:5:204:-5.79974,0,-120.324 0/0:15:14,1:14:565:1:41:0,-0.420883,-47.0974 dDocent_Contig_10902 149 . G A 596.393 . AB=0.666667;ABP=10.2485;AC=1;AF=0.125;AN=8;AO=20;CIGAR=1X;DP=57;DPB=57;DPRA=3.33333;EPP=46.4397;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=775;QR=1419;RO=36;RPL=0;RPP=46.4397;RPPR=81.1833;RPR=20;RUN=1;SAF=0;SAP=46.4397;SAR=20;SRF=0;SRP=81.1833;SRR=36;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:10,20:10:398:20:775:-61.0371,0,-27.1453 0/0:10:10,0:10:378:0:0:0,-3.0103,-34.363 0/0:14:13,0:13:520:0:0:0,-3.91339,-46.8198 0/0:3:3,0:3:123:0:0:0,-0.90309,-11.4648 dDocent_Contig_10903 96 . C A 270.642 . AB=0.270833;ABP=24.906;AC=1;AF=0.125;AN=8;AO=20;CIGAR=1X;DP=172;DPB=172;DPRA=1.17544;EPP=46.4397;EPPR=333.074;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.95;PAIREDR=0.980263;PAO=0;PQA=0;PQR=0;PRO=0;QA=723;QR=5387;RO=152;RPL=20;RPP=46.4397;RPPR=333.074;RPR=0;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=152;SRP=333.074;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:48:35,13:35:1236:13:473:-28.4619,0,-97.0938 0/0:38:38,0:38:1358:0:0:0,-11.4391,-122.52 0/0:62:57,5:57:1999:5:180:0,-2.11196,-163.628 0/0:24:22,2:22:794:2:70:0,-0.577604,-65.1376 dDocent_Contig_10904 105 . N A 276.444 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=9;CIGAR=3X3M1D1M;DP=9;DPB=13.125;DPRA=0;EPP=22.5536;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0.5;PQA=17;PQR=103;PRO=3.5;QA=300;QR=0;RO=0;RPL=0;RPP=22.5536;RPPR=0;RPR=9;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:4:0,4:0:0:4:134:-12.3913,-1.20412,0 1|1:5:0,5:0:0:5:166:-14.9518,-1.50515,0 .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. dDocent_Contig_10907 10 . G A 5596.25 . AB=0.877419;ABP=194.786;AC=5;AF=0.625;AN=8;AO=173;CIGAR=1X;DP=194;DPB=194;DPRA=0;EPP=378.675;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.942197;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6872;QR=808;RO=21;RPL=0;RPP=378.675;RPPR=48.6112;RPR=173;RUN=1;SAF=173;SAP=378.675;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:49:6,43:6:222:43:1699:-138.385,0,-5.58406 0/1:70:7,63:7:282:63:2522:-206.043,0,-4.68049 1/1:39:2,37:2:81:37:1449:-122.976,-4.05444,0 0/1:36:6,30:6:223:30:1202:-97.6185,0,-9.58716 dDocent_Contig_10908 108 . G T 1203.87 . AB=0.520408;ABP=3.36483;AC=4;AF=0.5;AN=8;AO=51;CIGAR=1X;DP=98;DPB=98;DPRA=0;EPP=113.755;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1733;QR=1595;RO=47;RPL=0;RPP=113.755;RPPR=105.07;RPR=51;RUN=1;SAF=0;SAP=113.755;SAR=51;SRF=0;SRP=105.07;SRR=47;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:19,4:19:640:4:139:-5.929,0,-50.994 0/1:28:11,17:11:370:17:589:-44.9079,0,-25.1969 0/1:41:14,27:14:487:27:902:-69.1439,0,-31.819 0/1:6:3,3:3:98:3:103:-7.80384,0,-7.33815 dDocent_Contig_10909 24 . G A 112.5 . AB=0.384615;ABP=4.51363;AC=1;AF=0.125;AN=8;AO=5;CIGAR=2X;DP=126;DPB=126;DPRA=0.345133;EPP=13.8677;EPPR=257.073;GTI=0;LEN=1;MEANALT=1;MQM=43.2;MQMR=59.9231;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.632479;PAO=0;PQA=0;PQR=0;PRO=0;QA=186;QR=4650;RO=117;RPL=0;RPP=13.8677;RPPR=257.073;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=117;SRP=257.073;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:13:8,5:8:318:5:186:-12.6479,0,-25.0727 0|0:48:48,0:48:1917:0:0:0,-14.4494,-172.699 0|0:20:18,0:18:709:0:0:0,-5.41854,-63.7316 0|0:45:43,0:43:1706:0:0:0,-12.9443,-153.381 dDocent_Contig_10910 17 . G A 216.166 . AB=0.181818;ABP=61.0478;AC=2;AF=0.25;AN=8;AO=12;CIGAR=1X;DP=121;DPB=121;DPRA=1.2;EPP=29.068;EPPR=239.701;GTI=0;LEN=1;MEANALT=1;MQM=58.0833;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.583333;PAIREDR=0.990826;PAO=0;PQA=0;PQR=0;PRO=0;QA=491;QR=4344;RO=109;RPL=0;RPP=29.068;RPPR=239.701;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=109;SRP=239.701;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:13:13,0:13:525:0:0:0,-3.91339,-47.5967 0/1:52:42,10:42:1690:10:410:-21.6007,0,-136.667 0/0:42:42,0:42:1658:0:0:0,-12.6433,-149.449 0/1:14:12,2:12:471:2:81:-3.40973,0,-38.5228 dDocent_Contig_10911 35 . A G 3439.21 . AB=0.73224;ABP=88.7419;AC=4;AF=0.5;AN=8;AO=134;CIGAR=1M1I9M1X2M;DP=183;DPB=193.462;DPRA=0;EPP=293.988;EPPR=100.727;GTI=0;LEN=1;MEANALT=1.75;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4497;QR=1754;RO=45;RPL=0;RPP=293.988;RPPR=100.727;RPR=134;RUN=1;SAF=134;SAP=293.988;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:48:13,33:13:506:33:1173:-91.7009,0,-31.7108 0|1:67:11,54:11:427:54:1789:-141.345,0,-18.8618 0|1:58:19,39:19:742:39:1271:-97.2043,0,-49.6486 0|1:10:2,8:2:79:8:264:-21.0684,0,-4.48733 dDocent_Contig_10912 17 . T A 701.46 . AB=0.0697674;ABP=72.1439;AC=0;AF=0;AN=8;AO=3;CIGAR=1M1D1X15M;DP=88;DPB=86.6111;DPRA=0;EPP=9.52472;EPPR=113.755;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=0.980392;PAO=0;PQA=0;PQR=0;PRO=0;QA=121;QR=1962;RO=51;RPL=0;RPP=9.52472;RPPR=113.755;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:19:16,1,2,0:16:601:1,2,0:40,74,0:-1.21759,-2.72906,-51.6634,0,-45.9111,-48.6056,-6.03407,-51.9644,-49.2076,-55.2608 0|0:22:15,0,7,0:15:581:0,7,0:0,254,0:-16.583,-21.0984,-68.842,0,-48.1139,-46.0067,-21.0984,-68.842,-48.1139,-68.842 0|0:24:12,2,9,1:12:463:2,9,1:81,341,37:-24.3337,-21.2624,-58.6855,0,-31.3331,-35.3057,-24.9201,-56.2611,-34.9892,-62.6412 0|0:23:8,0,12,3:8:317:0,12,3:0,452,120:-34.6097,-37.018,-63.1162,0,-26.0903,-22.478,-27.1281,-53.2289,-16.2041,-52.3258 dDocent_Contig_10913 10 . G A 963.501 . AB=0.188192;ABP=231.864;AC=4;AF=0.5;AN=8;AO=51;CIGAR=1X2M1X;DP=271;DPB=271;DPRA=0;EPP=113.755;EPPR=480.734;GTI=0;LEN=1;MEANALT=1;MQM=59.9412;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.995455;PAO=0;PQA=0;PQR=0;PRO=0;QA=2032;QR=8671;RO=220;RPL=0;RPP=113.755;RPPR=480.734;RPR=51;RUN=1;SAF=51;SAP=113.755;SAR=0;SRF=220;SRP=480.734;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:83:68,15:68:2698:15:605:-29.8008,0,-217.965 0|1:123:105,18:105:4152:18:713:-27.4711,0,-336.649 0|1:31:16,15:16:624:15:594:-44.4665,0,-47.1618 0|1:34:31,3:31:1197:3:120:-0.95267,0,-97.7783 dDocent_Contig_10914 33 . G A 139.561 . AB=0.158537;ABP=86.0559;AC=4;AF=0.5;AN=8;AO=13;CIGAR=1X;DP=82;DPB=82;DPRA=0;EPP=31.2394;EPPR=152.842;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.769231;PAIREDR=0.681159;PAO=0;PQA=0;PQR=0;PRO=0;QA=495;QR=2735;RO=69;RPL=0;RPP=31.2394;RPPR=152.842;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=69;SRP=152.842;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:21,3:21:817:3:113:-3.31331,0,-66.6209 0/1:21:18,3:18:723:3:113:-4.21439,0,-59.0729 0/1:19:15,4:15:599:4:149:-8.05107,0,-48.5264 0/1:18:15,3:15:596:3:120:-5.76936,0,-48.5567 dDocent_Contig_10915 98 . N A 126.683 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=7.37776;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=137;QR=0;RO=0;RPL=4;RPP=11.6962;RPPR=0;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:4:0,4:0:0:4:137:-12.6681,-1.20412,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_10916 16 . A T 149.214 . AB=0.242424;ABP=22.0271;AC=3;AF=0.375;AN=8;AO=8;CIGAR=1X;DP=40;DPB=40;DPRA=1.57143;EPP=20.3821;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.75;PAIREDR=0.96875;PAO=0;PQA=0;PQR=0;PRO=0;QA=323;QR=1282;RO=32;RPL=0;RPP=20.3821;RPPR=72.4974;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:8:5,3:5:205:3:123:-9.05655,0,-16.4268 0/1:15:13,2:13:517:2:80:-3.07634,0,-42.3589 0/1:10:7,3:7:282:3:120:-8.17739,0,-22.7427 0/0:7:7,0:7:278:0:0:0,-2.10721,-25.3898 dDocent_Contig_10917 9 . A G 141.174 . AB=0.225806;ABP=23.254;AC=1;AF=0.125;AN=8;AO=15;CIGAR=1X;DP=224;DPB=224;DPRA=0.976608;EPP=35.5824;EPPR=456.848;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=55.6364;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.904306;PAO=0;PQA=0;PQR=0;PRO=0;QA=564;QR=7973;RO=209;RPL=0;RPP=35.5824;RPPR=456.848;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=209;SRP=456.848;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:24,7:24:927:7:272:-15.5153,0,-72.3175 0/0:78:72,6:72:2726:6:214:0,-3.87705,-208.958 0/0:58:56,2:56:2132:2:78:0,-10.0563,-178.479 0/0:57:57,0:57:2188:0:0:0,-17.1587,-182.986 dDocent_Contig_10918 30 . A T 134.716 . AB=0.272727;ABP=12.8806;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=136;DPB=136;DPRA=0.578947;EPP=16.0391;EPPR=285.302;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.946154;PAO=0;PQA=0;PQR=0;PRO=0;QA=238;QR=5124;RO=130;RPL=0;RPP=16.0391;RPPR=285.302;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=130;SRP=285.302;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:20:20,0:20:782:0:0:0,-6.0206,-70.6983 0/0:80:80,0:80:3162:0:0:0,-24.0824,-284.665 0/1:22:16,6:16:639:6:238:-15.1706,0,-51.2231 0/0:14:14,0:14:541:0:0:0,-4.21442,-49.0298 dDocent_Contig_10920 91 . G T 163.607 . AB=0.238095;ABP=28.0339;AC=2;AF=0.25;AN=8;AO=10;CIGAR=1X;DP=49;DPB=49;DPRA=6;EPP=24.725;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=348;QR=1311;RO=39;RPL=10;RPP=24.725;RPPR=87.6977;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:18,8:18:606:8:280:-17.7132,0,-47.0313 0/1:16:14,2:14:464:2:68:-1.6414,0,-37.2619 0/0:2:2,0:2:70:0:0:0,-0.60206,-6.6474 0/0:5:5,0:5:171:0:0:0,-1.50515,-15.7266 dDocent_Contig_10921 44 . C T 456.39 . AB=0.485714;ABP=3.07234;AC=2;AF=0.25;AN=8;AO=17;CIGAR=1X;DP=60;DPB=60;DPRA=1.4;EPP=39.9253;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=654;QR=1715;RO=43;RPL=0;RPP=39.9253;RPPR=96.3836;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:21:21,0:21:839:0:0:0,-6.32163,-75.824 0/1:14:10,4:10:392:4:151:-9.74155,0,-31.4174 0/1:21:8,13:8:323:13:503:-39.2953,0,-23.1175 0/0:4:4,0:4:161:0:0:0,-1.20412,-14.8753 dDocent_Contig_10922 29 . C A 306.538 . AB=0.714286;ABP=8.59409;AC=1;AF=0.125;AN=8;AO=10;CIGAR=1X;DP=66;DPB=66;DPRA=0.807692;EPP=24.725;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.7;PAIREDR=0.928571;PAO=0;PQA=0;PQR=0;PRO=0;QA=399;QR=2198;RO=56;RPL=0;RPP=24.725;RPPR=124.613;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:4,10:4:151:10:399:-32.0518,0,-9.73945 0/0:15:15,0:15:591:0:0:0,-4.51545,-53.5275 0/0:25:25,0:25:996:0:0:0,-7.52575,-89.9367 0/0:12:12,0:12:460:0:0:0,-3.61236,-41.7411 dDocent_Contig_10923 75 . T A 62.7869 . AB=0.181818;ABP=22.3561;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=55;DPB=55;DPRA=2;EPP=11.6962;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=158;QR=1956;RO=51;RPL=4;RPP=11.6962;RPPR=113.755;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:17:17,0:17:653:0:0:0,-5.11751,-59.1066 0/1:22:18,4:18:687:4:158:-7.9771,0,-55.5381 0/0:15:15,0:15:577:0:0:0,-4.51545,-52.2721 0/0:1:1,0:1:39:0:0:0,-0.30103,-3.89656 dDocent_Contig_10924 182 . G A 36.9169 . AB=0.285714;ABP=5.80219;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X;DP=27;DPB=27;DPRA=1.05;EPP=7.35324;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=79;QR=968;RO=25;RPL=2;RPP=7.35324;RPPR=57.2971;RPR=0;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=57.2971;SRR=25;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:11,0:11:423:0:0:0,-3.31133,-38.4172 0/0:6:6,0:6:234:0:0:0,-1.80618,-21.4273 0/1:7:5,2:5:201:2:79:-5.39042,0,-16.3628 0/0:3:3,0:3:110:0:0:0,-0.90309,-10.2598 dDocent_Contig_10925 33 . T C 1007.46 . AB=0.361905;ABP=20.4028;AC=3;AF=0.375;AN=8;AO=40;CIGAR=1X;DP=138;DPB=138;DPRA=0;EPP=89.8692;EPPR=215.815;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1587;QR=3867;RO=98;RPL=0;RPP=89.8692;RPPR=215.815;RPR=40;RUN=1;SAF=40;SAP=89.8692;SAR=0;SRF=98;SRP=215.815;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:45:35,10:35:1399:10:390:-21.9106,0,-112.614 0/1:21:9,12:9:363:12:486:-37.7698,0,-26.7124 0/0:33:31,2:31:1181:2:68:0,-3.47936,-100.09 0/1:39:23,16:23:924:16:643:-46.4637,0,-71.7227 dDocent_Contig_10926 21 . C A 70.8203 . AB=0.131148;ABP=75.0961;AC=2;AF=0.25;AN=8;AO=8;CIGAR=1X;DP=95;DPB=95;DPRA=1.79412;EPP=20.3821;EPPR=191.928;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.75;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=312;QR=3482;RO=87;RPL=0;RPP=20.3821;RPPR=191.928;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=87;SRP=191.928;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:23,3:23:937:3:115:-2.89743,0,-76.8026 0/1:35:30,5:30:1198:5:197:-7.56874,0,-97.5597 0/0:32:32,0:32:1266:0:0:0,-9.63296,-114.21 0/0:2:2,0:2:81:0:0:0,-0.60206,-7.68573 dDocent_Contig_10927 35 . G A 75.8924 . AB=0.14;ABP=59.2949;AC=2;AF=0.25;AN=8;AO=7;CIGAR=1X;DP=226;DPB=226;DPRA=0.284091;EPP=18.2106;EPPR=478.563;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.986301;PAO=0;PQA=0;PQR=0;PRO=0;QA=280;QR=8649;RO=219;RPL=0;RPP=18.2106;RPPR=478.563;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=219;SRP=478.563;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:127:127,0:127:5005:0:0:0,-38.2308,-450.349 0/0:49:49,0:49:1950:0:0:0,-14.7505,-175.695 0/1:32:27,5:27:1059:5:200:-8.74658,0,-85.9702 0/1:18:16,2:16:635:2:80:-2.17325,0,-52.0674 dDocent_Contig_10928 127 . C T 252.463 . AB=0.44;ABP=3.79203;AC=1;AF=0.125;AN=8;AO=11;CIGAR=1X;DP=110;DPB=110;DPRA=0.882353;EPP=26.8965;EPPR=217.986;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=376;QR=3390;RO=99;RPL=0;RPP=26.8965;RPPR=217.986;RPR=11;RUN=1;SAF=0;SAP=26.8965;SAR=11;SRF=0;SRP=217.986;SRR=99;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:14,11:14:489:11:376:-26.6442,0,-36.8164 0/0:23:23,0:23:786:0:0:0,-6.92369,-71.0566 0/0:42:42,0:42:1440:0:0:0,-12.6433,-129.896 0/0:20:20,0:20:675:0:0:0,-6.0206,-61.0664 dDocent_Contig_10929 29 . C T 667.599 . AB=0.333333;ABP=22.5536;AC=4;AF=0.5;AN=8;AO=27;CIGAR=1X1M1X;DP=81;DPB=81;DPRA=0;EPP=61.6401;EPPR=120.27;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1077;QR=2151;RO=54;RPL=0;RPP=61.6401;RPPR=120.27;RPR=27;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:5:2,3:2:80:3:120:-9.68254,0,-6.08664 0|1:19:17,2:17:684:2:81:-1.96616,0,-56.1703 0|1:21:9,12:9:353:12:483:-37.4998,0,-25.8076 0|1:36:26,10:26:1034:10:393:-24.8852,0,-82.5179 dDocent_Contig_10930 42 . C T 36.6158 . AB=0.181818;ABP=22.3561;AC=2;AF=0.25;AN=8;AO=4;CIGAR=1X;DP=47;DPB=47;DPRA=0.88;EPP=11.6962;EPPR=87.8997;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.976744;PAO=0;PQA=0;PQR=0;PRO=0;QA=144;QR=1697;RO=43;RPL=0;RPP=11.6962;RPPR=96.3836;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=42;SRP=87.8997;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:11,2:11:443:2:74:-3.11204,0,-36.3129 0/0:14:14,0:14:558:0:0:0,-4.21442,-50.5629 0/0:11:11,0:11:413:0:0:0,-3.31133,-37.5005 0/1:9:7,2:7:283:2:70:-3.93785,0,-23.1337 dDocent_Contig_10931 50 . A T 92.2923 . AB=0.157895;ABP=41.6397;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=122;DPB=122;DPRA=1.90476;EPP=20.3821;EPPR=250.558;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=323;QR=4482;RO=114;RPL=8;RPP=20.3821;RPPR=250.558;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=114;SRP=250.558;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:38:32,6:32:1230:6:241:-10.6272,0,-99.5268 0/0:42:40,2:40:1577:2:82:0,-4.86358,-134.391 0/0:34:34,0:34:1352:0:0:0,-10.235,-121.941 0/0:8:8,0:8:323:0:0:0,-2.40824,-29.4386 dDocent_Contig_10932 48 . T C 130.492 . AB=0.205128;ABP=32.4644;AC=3;AF=0.375;AN=8;AO=8;CIGAR=1X;DP=51;DPB=51;DPRA=1.08333;EPP=20.3821;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=318;QR=1681;RO=43;RPL=0;RPP=20.3821;RPPR=96.3836;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:12:12,0:12:476:0:0:0,-3.61236,-43.1889 0/1:26:20,6:20:761:6:236:-13.7837,0,-60.9803 0/1:8:7,1:7:281:1:41:-1.68633,0,-23.2541 0/1:5:4,1:4:163:1:41:-2.58942,0,-13.5533 dDocent_Contig_10933 52 . T A 63.1649 . AB=0.333333;ABP=5.18177;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=51;DPB=51;DPRA=0.642857;EPP=9.52472;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.916667;PAO=0;PQA=0;PQR=0;PRO=0;QA=115;QR=1832;RO=48;RPL=3;RPP=9.52472;RPPR=107.241;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:9:9,0:9:351:0:0:0,-2.70927,-31.9506 0/0:23:23,0:23:866:0:0:0,-6.92369,-78.2511 0/0:10:10,0:10:388:0:0:0,-3.0103,-35.2772 0/1:9:6,3:6:227:3:115:-8.01546,0,-18.0822 dDocent_Contig_10934 13 . G A 65.2724 . AB=0.166667;ABP=26.1727;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=121;DPB=121;DPRA=0.742268;EPP=11.6962;EPPR=257.073;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.957265;PAO=0;PQA=0;PQR=0;PRO=0;QA=164;QR=4649;RO=117;RPL=0;RPP=11.6962;RPPR=257.073;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=117;SRP=257.073;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:20,4:20:800:4:164:-7.92518,0,-65.0875 0/0:13:13,0:13:518:0:0:0,-3.91339,-46.9654 0/0:60:60,0:60:2367:0:0:0,-18.0618,-213.193 0/0:24:24,0:24:964:0:0:0,-7.22472,-87.0614 dDocent_Contig_10935 72 . A T 3810.74 . AB=0.0625;ABP=82.8119;AC=1;AF=0.125;AN=8;AO=3;CIGAR=2X;DP=178;DPB=178;DPRA=0.324324;EPP=9.52472;EPPR=76.8404;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=108;QR=1149;RO=34;RPL=3;RPP=9.52472;RPPR=76.8404;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:74:7,0,67:7:231:0,67:0,2277:-184.081,-186.188,-204.863,-1.16333,-20.169,0 0|0:56:19,0,37:19:644:0,37:0,1279:-98.5533,-104.273,-156.492,0,-52.5602,-41.4221 1|0:22:1,2,19:1:35:2,19:72,652:-55.6594,-50.084,-52.3301,-3.03706,0,-0.161908 0|0:26:7,1,18:7:239:1,18:36,599:-46.3387,-45.5071,-64.6038,0,-16.4394,-13.9606 dDocent_Contig_10937 24 . C T 886.147 . AB=0.388235;ABP=12.2327;AC=4;AF=0.5;AN=8;AO=33;CIGAR=1X;DP=85;DPB=85;DPRA=0;EPP=74.6689;EPPR=111.584;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.878788;PAIREDR=0.8;PAO=0;PQA=0;PQR=0;PRO=0;QA=1336;QR=2028;RO=50;RPL=0;RPP=74.6689;RPPR=111.584;RPR=33;RUN=1;SAF=33;SAP=74.6689;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:15,13:15:609:13:526:-39.258,0,-46.7191 0/1:21:13,8:13:526:8:321:-22.9354,0,-41.3654 0/1:24:15,8:15:610:8:326:-22.3856,0,-47.9136 0/1:12:7,4:7:283:4:163:-11.4337,0,-22.2278 dDocent_Contig_10938 13 . G A 41.632 . AB=0.166667;ABP=20.3821;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=114;DPB=114;DPRA=1.12821;EPP=16.0391;EPPR=212.195;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.944444;PAO=0;PQA=0;PQR=0;PRO=0;QA=243;QR=4265;RO=108;RPL=0;RPP=16.0391;RPPR=237.529;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=105;SRP=212.195;SRR=3;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:43:42,1:42:1645:1:40:0,-8.94861,-144.286 0/0:27:25,2:25:977:2:82:0,-0.348132,-80.4441 0/0:26:26,0:26:1034:0:0:0,-7.82678,-93.3474 0/1:18:15,3:15:609:3:121:-5.86166,0,-49.7294 dDocent_Contig_10939 29 . A G 219.142 . AB=0.244898;ABP=30.7077;AC=3;AF=0.375;AN=8;AO=12;CIGAR=1X;DP=59;DPB=59;DPRA=1.63333;EPP=29.068;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.333333;PAIREDR=0.957447;PAO=0;PQA=0;PQR=0;PRO=0;QA=455;QR=1871;RO=47;RPL=0;RPP=29.068;RPPR=105.07;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:15,5:15:596:5:195:-11.9017,0,-47.9556 0/1:19:14,5:14:553:5:178:-10.6409,0,-44.3857 0/0:10:10,0:10:401:0:0:0,-3.0103,-36.4489 0/1:10:8,2:8:321:2:82:-4.76938,0,-26.2478 dDocent_Contig_10940 20 . G A 130.548 . AB=0.333333;ABP=7.35324;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=96;DPB=96;DPRA=0.692308;EPP=16.0391;EPPR=198.443;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.888889;PAO=0;PQA=0;PQR=0;PRO=0;QA=217;QR=3604;RO=90;RPL=0;RPP=16.0391;RPPR=198.443;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=90;SRP=198.443;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:12,6:12:487:6:217:-14.4527,0,-38.762 0/0:44:44,0:44:1762:0:0:0,-13.2453,-158.798 0/0:21:21,0:21:844:0:0:0,-6.32163,-76.2687 0/0:13:13,0:13:511:0:0:0,-3.91339,-46.33 dDocent_Contig_10941 88 . C A 92.1128 . AB=0.294118;ABP=9.26925;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=71;DPB=71;DPRA=0.944444;EPP=13.8677;EPPR=146.327;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=171;QR=2237;RO=66;RPL=5;RPP=13.8677;RPPR=146.327;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=66;SRP=146.327;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:12,5:12:401:5:171:-10.6092,0,-31.2939 0/0:22:22,0:22:737:0:0:0,-6.62266,-66.6404 0/0:21:21,0:21:718:0:0:0,-6.32163,-64.9385 0/0:11:11,0:11:381:0:0:0,-3.31133,-34.6237 dDocent_Contig_10943 38 . C G 42.7455 . AB=0.285714;ABP=5.80219;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X;DP=64;DPB=64;DPRA=0.368421;EPP=7.35324;EPPR=137.642;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=2499;RO=62;RPL=0;RPP=7.35324;RPPR=137.642;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:7:5,2:5:203:2:82:-5.67247,0,-16.5456 0/0:20:20,0:20:802:0:0:0,-6.0206,-72.4939 0/0:14:14,0:14:566:0:0:0,-4.21442,-51.2826 0/0:23:23,0:23:928:0:0:0,-6.92369,-83.8231 dDocent_Contig_10944 40 . C T 194.158 . AB=0.232558;ABP=29.7245;AC=2;AF=0.25;AN=8;AO=10;CIGAR=1X;DP=69;DPB=69;DPRA=1.65385;EPP=24.725;EPPR=131.127;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.813559;PAO=0;PQA=0;PQR=0;PRO=0;QA=386;QR=2291;RO=59;RPL=0;RPP=24.725;RPPR=131.127;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=59;SRP=131.127;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:20:20,0:20:748:0:0:0,-6.0206,-67.622 0/1:22:14,8:14:556:8:304:-21.0846,0,-43.7583 0/1:21:19,2:19:743:2:82:-1.45805,0,-60.8655 0/0:6:6,0:6:244:0:0:0,-1.80618,-22.3388 dDocent_Contig_10945 8 . A C 2727.17 . AB=0.579268;ABP=11.961;AC=4;AF=0.5;AN=8;AO=95;CIGAR=1X;DP=164;DPB=164;DPRA=0;EPP=184.065;EPPR=98.2089;GTI=0;LEN=1;MEANALT=1;MQM=59.8632;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.884211;PAIREDR=0.73913;PAO=0;PQA=0;PQR=0;PRO=0;QA=3647;QR=2626;RO=69;RPL=0;RPP=209.3;RPPR=152.842;RPR=95;RUN=1;SAF=92;SAP=184.065;SAR=3;SRF=62;SRP=98.2089;SRR=7;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:41:13,28:13:492:28:1084:-85.5207,0,-32.2828 0/1:34:16,18:16:613:18:675:-50.8385,0,-45.2742 0/1:51:20,31:20:758:31:1201:-93.0334,0,-53.1896 0/1:38:20,18:20:763:18:687:-50.7228,0,-57.5594 dDocent_Contig_10946 136 . G T 80.072 . AB=0.444444;ABP=3.25157;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=35;DPB=35;DPRA=1.03846;EPP=11.6962;EPPR=61.9202;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=56.871;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.935484;PAO=0;PQA=0;PQR=0;PRO=0;QA=131;QR=1100;RO=31;RPL=0;RPP=11.6962;RPPR=70.3259;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=1;SRP=61.9202;SRR=30;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:5,4:5:174:4:131:-9.40449,0,-13.2906 0/0:17:17,0:17:614:0:0:0,-5.11751,-52.3282 0/0:8:8,0:8:282:0:0:0,-2.40824,-25.7197 0/0:1:1,0:1:30:0:0:0,-0.30103,-2.99957 dDocent_Contig_10947 10 . C A 166.569 . AB=0.411765;ABP=4.1599;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=68;DPB=68;DPRA=1;EPP=18.2106;EPPR=135.47;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.918033;PAO=0;PQA=0;PQR=0;PRO=0;QA=257;QR=2447;RO=61;RPL=0;RPP=18.2106;RPPR=135.47;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=61;SRP=135.47;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:10:10,0:10:399:0:0:0,-3.0103,-36.2685 0/0:38:38,0:38:1527:0:0:0,-11.4391,-137.664 0/1:17:10,7:10:405:7:257:-18.3558,0,-31.6929 0/0:3:3,0:3:116:0:0:0,-0.90309,-10.8168 dDocent_Contig_10948 129 . A G 30.7078 . AB=0.2;ABP=10.8276;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X;DP=95;DPB=95;DPRA=0.352941;EPP=7.35324;EPPR=204.957;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=3676;RO=93;RPL=0;RPP=7.35324;RPPR=204.957;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=204.957;SRR=93;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:45:45,0:45:1788:0:0:0,-13.5463,-161.129 0/0:17:17,0:17:639:0:0:0,-5.11751,-57.8258 0/0:23:23,0:23:924:0:0:0,-6.92369,-83.4654 0/1:10:8,2:8:325:2:82:-4.76938,0,-26.6093 dDocent_Contig_10949 28 . G T 68.7196 . AB=0.333333;ABP=5.18177;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=75;DPB=75;DPRA=0.409091;EPP=9.52472;EPPR=159.356;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=121;QR=2855;RO=72;RPL=0;RPP=9.52472;RPPR=159.356;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=72;SRP=159.356;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:14:14,0:14:538:0:0:0,-4.21442,-48.7538 0/0:43:43,0:43:1717:0:0:0,-12.9443,-154.755 0/1:9:6,3:6:245:3:121:-8.57093,0,-19.7202 0/0:9:9,0:9:355:0:0:0,-2.70927,-32.3115 dDocent_Contig_10950 30 . G A 223.211 . AB=0.444444;ABP=3.49285;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=63;DPB=63;DPRA=1.2;EPP=20.3821;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=323;QR=2190;RO=55;RPL=0;RPP=20.3821;RPPR=122.441;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:20:20,0:20:802:0:0:0,-6.0206,-72.4962 0/1:18:10,8:10:391:8:323:-24.02,0,-30.1217 0/0:19:19,0:19:769:0:0:0,-5.71957,-69.5306 0/0:6:6,0:6:228:0:0:0,-1.80618,-20.8831 dDocent_Contig_10951 28 . T C 239.782 . AB=0.209677;ABP=48.4011;AC=3;AF=0.375;AN=8;AO=13;CIGAR=1X;DP=65;DPB=65;DPRA=6.88889;EPP=31.2394;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=521;QR=2023;RO=52;RPL=0;RPP=31.2394;RPPR=115.927;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:18,6:18:700:6:242:-14.9326,0,-56.1036 0/1:13:11,2:11:420:2:80:-3.6784,0,-34.2335 0/1:25:20,5:20:783:5:199:-10.7628,0,-63.2651 0/0:3:3,0:3:120:0:0:0,-0.90309,-11.1873 dDocent_Contig_10952 43 . G T 823.925 . AB=0.477612;ABP=3.30199;AC=4;AF=0.5;AN=8;AO=32;CIGAR=1X;DP=67;DPB=67;DPRA=0;EPP=72.4974;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.971429;PAO=0;PQA=0;PQR=0;PRO=0;QA=1206;QR=1291;RO=35;RPL=0;RPP=72.4974;RPPR=79.0118;RPR=32;RUN=1;SAF=32;SAP=72.4974;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:6,18:6:226:18:680:-54.3087,0,-13.4774 0/1:8:4,4:4:150:4:144:-10.9036,0,-11.4573 0/1:23:16,7:16:578:7:269:-17.6509,0,-45.4278 0/1:12:9,3:9:337:3:113:-6.92718,0,-27.0714 dDocent_Contig_10953 17 . T A 2903.17 . AB=0.241758;ABP=319.282;AC=4;AF=0.5;AN=8;AO=132;CIGAR=2X;DP=546;DPB=546;DPRA=0;EPP=289.645;EPPR=786.912;GTI=0;LEN=1;MEANALT=2.5;MQM=54.4697;MQMR=59.277;NS=4;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0.290859;PAO=0;PQA=0;PQR=0;PRO=0;QA=5150;QR=14297;RO=361;RPL=0;RPP=289.645;RPPR=786.912;RPR=132;RUN=1;SAF=132;SAP=289.645;SAR=0;SRF=361;SRP=786.912;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:141:117,5,19:117:4623:5,19:191,752:-26.6996,-48.8646,-426.655,0,-366.296,-373.644 0|1:185:104,21,58:104:4123:21,58:822,2282:-141.241,-120.525,-450.562,0,-284.379,-318.944 0|1:144:92,10,41:92:3638:10,41:396,1595:-102.274,-103.373,-399.318,0,-272.401,-286.659 0|1:76:48,14,14:48:1913:14,14:562,521:-27.5003,0,-151.304,-3.93036,-117.497,-155.21 dDocent_Contig_10954 39 . C T 2908.45 . AB=0.420635;ABP=16.7974;AC=4;AF=0.5;AN=8;AO=106;CIGAR=1X;DP=252;DPB=252;DPRA=0;EPP=233.186;EPPR=320.045;GTI=0;LEN=1;MEANALT=1;MQM=59.934;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.990566;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4144;QR=5757;RO=146;RPL=0;RPP=233.186;RPPR=320.045;RPR=106;RUN=1;SAF=106;SAP=233.186;SAR=0;SRF=146;SRP=320.045;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:52:22,30:22:868:30:1206:-93.1608,0,-62.7759 0/1:81:48,33:48:1903:33:1280:-91.077,0,-147.093 0/1:59:43,16:43:1683:16:588:-35.4755,0,-133.924 0/1:60:33,27:33:1303:27:1070:-78.5301,0,-99.4781 dDocent_Contig_10955 22 . C G 94.6261 . AB=0.190476;ABP=72.911;AC=3;AF=0.375;AN=8;AO=16;CIGAR=2X;DP=107;DPB=107;DPRA=1.21739;EPP=37.7539;EPPR=200.614;GTI=0;LEN=1;MEANALT=1;MQM=28;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=611;QR=3551;RO=91;RPL=0;RPP=37.7539;RPPR=200.614;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=91;SRP=200.614;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:32:25,7:25:999:7:277:-8.03918,0,-80.5674 0|0:23:23,0:23:869:0:0:0,-6.92369,-78.5115 0|1:30:25,5:25:957:5:185:-2.464,0,-77.397 0|1:22:18,4:18:726:4:149:-4.32111,0,-59.0434 dDocent_Contig_10957 24 . A T 743.916 . AB=0.251852;ABP=75.2158;AC=4;AF=0.5;AN=8;AO=34;CIGAR=2X;DP=135;DPB=135;DPRA=0;EPP=76.8404;EPPR=222.329;GTI=0;LEN=1;MEANALT=1;MQM=59.0588;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1350;QR=4046;RO=101;RPL=0;RPP=76.8404;RPPR=222.329;RPR=34;RUN=1;SAF=34;SAP=76.8404;SAR=0;SRF=101;SRP=222.329;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:65:50,15:50:2013:15:605:-34.665,0,-161.79 0|1:46:31,15:31:1236:15:592:-39.7571,0,-97.6639 0|1:6:5,1:5:189:1:41:-2.28839,0,-15.5637 0|1:18:15,3:15:608:3:112:-5.02637,0,-49.6389 dDocent_Contig_10958 7 . A C 2148.23 . AB=0.04;ABP=140.855;AC=3;AF=0.375;AN=8;AO=3;CIGAR=1X1M2X3M;DP=169;DPB=169;DPRA=0;EPP=9.52472;EPPR=128.956;GTI=0;LEN=1;MEANALT=3;MQM=45;MQMR=60;NS=4;NUMALT=4;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=89;QR=2240;RO=58;RPL=0;RPP=9.52472;RPPR=128.956;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:48:4,0,21,1,22:4:160:0,21,1,22:0,697,15,854:-110.121,-111.325,-124.51,-57.0233,-70.2071,-63.8855,-110.546,-123.731,-69.4328,-123.43,-41.1162,-54.31,0,-53.534,-47.6874 0|0:44:31,0,3,0,8:31:1189:0,3,0,8:0,117,0,299:-15.2217,-24.5536,-122.18,-15.1456,-112.787,-111.884,-24.5536,-122.18,-112.787,-122.18,0,-97.6966,-88.303,-97.6966,-95.2884 1|0:50:8,4,23,0,15:8:313:4,23,0,15:159,817,0,576:-84.2013,-73.5151,-98.0521,-21.5404,-34.1851,-40.3541,-86.6096,-99.2562,-47.2778,-112.35,-39.3165,-51.9652,0,-65.0607,-60.5452 0|1:27:15,0,6,2,4:15:578:0,6,2,4:0,218,74,151:-12.6768,-17.1922,-64.6645,0,-47.4676,-45.6614,-11.1373,-58.6113,-41.4152,-58.0092,-4.80929,-52.2881,-35.0927,-46.235,-51.084 dDocent_Contig_10960 94 . T C 436.908 . AB=0.62963;ABP=6.95112;AC=1;AF=0.125;AN=8;AO=17;CIGAR=1X;DP=97;DPB=97;DPRA=1.15714;EPP=39.9253;EPPR=176.728;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.9875;PAO=0;PQA=0;PQR=0;PRO=0;QA=591;QR=2771;RO=80;RPL=17;RPP=39.9253;RPPR=176.728;RPR=0;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=80;SRP=176.728;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:14:14,0:14:493:0:0:0,-4.21442,-44.7037 0/1:27:10,17:10:354:17:591:-45.3897,0,-24.0724 0/0:37:37,0:37:1251:0:0:0,-11.1381,-112.884 0/0:19:19,0:19:673:0:0:0,-5.71957,-60.8981 dDocent_Contig_10961 189 . A G 35.0216 . AB=0.285714;ABP=5.80219;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=110;DPB=110;DPRA=2.14286;EPP=16.0391;EPPR=228.843;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=238;QR=4010;RO=104;RPL=6;RPP=16.0391;RPPR=228.843;RPR=0;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=228.843;SRR=104;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:27:27,0:27:1054:0:0:0,-8.12781,-95.1486 0/0:68:64,4:64:2467:4:161:0,-5.59455,-207.32 0/1:7:5,2:5:173:2:77:-5.20099,0,-13.7927 0/0:8:8,0:8:316:0:0:0,-2.40824,-28.8054 dDocent_Contig_10964 77 . C G 1260.86 . AB=0.291005;ABP=74.7148;AC=4;AF=0.5;AN=8;AO=55;CIGAR=1X;DP=189;DPB=189;DPRA=0;EPP=122.441;EPPR=293.988;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2100;QR=5017;RO=134;RPL=55;RPP=122.441;RPPR=293.988;RPR=0;RUN=1;SAF=55;SAP=122.441;SAR=0;SRF=134;SRP=293.988;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:71:55,16:55:2041:16:618:-34.5861,0,-162.558 0/1:52:37,15:37:1397:15:577:-36.619,0,-110.355 0/1:49:29,20:29:1099:20:751:-53.1625,0,-84.4639 0/1:17:13,4:13:480:4:154:-9.11608,0,-38.4206 dDocent_Contig_10965 67 . A C 514.542 . AB=0.558824;ABP=4.03217;AC=1;AF=0.166667;AN=6;AO=19;CIGAR=1X;DP=53;DPB=53;DPRA=3.57895;EPP=44.2683;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=699;QR=1284;RO=34;RPL=19;RPP=44.2683;RPPR=76.8404;RPR=0;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 0/1:34:15,19:15:567:19:699:-52.977,0,-41.1276 0/0:13:13,0:13:497:0:0:0,-3.91339,-45.0697 0/0:6:6,0:6:220:0:0:0,-1.80618,-20.1522 dDocent_Contig_10966 76 . C A 34.8021 . AB=0.139535;ABP=51.5402;AC=3;AF=0.375;AN=8;AO=6;CIGAR=1X;DP=57;DPB=57;DPRA=1.02381;EPP=16.0391;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=213;QR=1765;RO=51;RPL=6;RPP=16.0391;RPPR=113.755;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:27,3:27:948:3:102:-0.485701,0,-76.6005 0/0:14:14,0:14:467:0:0:0,-4.21442,-42.3437 0/1:5:4,1:4:132:1:37:-2.19268,0,-10.6988 0/1:8:6,2:6:218:2:74:-4.61764,0,-17.5646 dDocent_Contig_10967 86 . A C 33.7164 . AB=0.2;ABP=10.8276;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=40;DPB=40;DPRA=1.5;EPP=9.52472;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.972973;PAO=0;PQA=0;PQR=0;PRO=0;QA=90;QR=1409;RO=37;RPL=3;RPP=9.52472;RPPR=83.3548;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:8,2:8:289:2:82:-4.76938,0,-23.3323 0/0:6:6,0:6:238:0:0:0,-1.80618,-21.7942 0/0:10:10,0:10:394:0:0:0,-3.0103,-35.8177 0/0:14:13,1:13:488:1:8:0,-3.41442,-43.4466 dDocent_Contig_10968 107 . N C 323.494 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=11;CIGAR=1X;DP=11;DPB=11;DPRA=0;EPP=26.8965;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=58.9091;MQMR=0;NS=4;NUMALT=1;ODDS=3.38813e-21;PAIRED=0.363636;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=339;QR=0;RO=0;RPL=0;RPP=26.8965;RPPR=0;RPR=11;RUN=1;SAF=0;SAP=26.8965;SAR=11;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:54:-5.12573,-0.60206,0 1/1:5:0,5:0:0:5:155:-14.2572,-1.50515,0 1/1:1:0,1:0:0:1:35:-3.49863,-0.30103,0 1/1:3:0,3:0:0:3:95:-8.86469,-0.90309,0 dDocent_Contig_10969 72 . G A 889.813 . AB=0.582278;ABP=7.6556;AC=3;AF=0.5;AN=6;AO=46;CIGAR=1X;DP=79;DPB=79;DPRA=0;EPP=102.898;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1305;QR=970;RO=33;RPL=46;RPP=102.898;RPPR=74.6689;RPR=0;RUN=1;SAF=46;SAP=102.898;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:19,12:19:542:12:346:-22.0923,0,-39.7266 0/1:38:7,31:7:214:31:875:-67.5834,0,-8.1219 0/1:10:7,3:7:214:3:84:-4.82836,0,-16.552 ./.:.:.:.:.:.:.:. dDocent_Contig_10970 73 . G T 76.5005 . AB=0.16129;ABP=33.9012;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=105;DPB=105;DPRA=1.25676;EPP=13.8677;EPPR=220.158;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.99;PAO=0;PQA=0;PQR=0;PRO=0;QA=200;QR=3898;RO=100;RPL=5;RPP=13.8677;RPPR=220.158;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=100;SRP=220.158;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:26,5:26:1008:5:200:-9.04799,0,-81.6886 0/0:26:26,0:26:1014:0:0:0,-7.82678,-91.5618 0/0:18:18,0:18:708:0:0:0,-5.41854,-64.0509 0/0:30:30,0:30:1168:0:0:0,-9.0309,-105.409 dDocent_Contig_10971 176 . A C 1472.29 . AB=0.369565;ABP=30.2009;AC=4;AF=0.5;AN=8;AO=68;CIGAR=1X4M1X;DP=184;DPB=184.833;DPRA=0;EPP=117.971;EPPR=19.6912;GTI=0;LEN=1;MEANALT=2.5;MQM=52.9853;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0.977273;PAO=2.5;PQA=84.5;PQR=0;PRO=0;QA=2274;QR=2977;RO=88;RPL=0;RPP=150.67;RPPR=19.6912;RPR=68;RUN=1;SAF=4;SAP=117.971;SAR=64;SRF=0;SRP=194.1;SRR=88;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:90:38,19,30:38:1303:19,30:629,996:-68.2966,-29.4356,-129.494,0,-55.485,-96.75 0|1:39:23,1,15:23:754:1,15:32,501:-32.0198,-36.3661,-96.9667,0,-58.163,-56.2253 0|1:28:10,3,15:10:362:3,15:98,504:-37.6224,-33.1504,-61.8054,0,-22.0989,-25.0571 0|1:27:17,1,8:17:558:1,8:24,273:-16.6879,-20.0622,-64.8552,0,-43.4584,-42.7973 dDocent_Contig_10973 80 . A G 89.4754 . AB=0.175;ABP=39.7082;AC=2;AF=0.25;AN=8;AO=7;CIGAR=1X;DP=74;DPB=74;DPRA=1.17647;EPP=18.2106;EPPR=146.327;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=261;QR=2518;RO=66;RPL=7;RPP=18.2106;RPPR=146.327;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=66;SRP=146.327;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:14:14,0:14:538:0:0:0,-4.21442,-48.7651 0/0:20:20,0:20:767:0:0:0,-6.0206,-69.3585 0/1:23:18,5:18:673:5:183:-9.90084,0,-53.9734 0/1:17:14,2:14:540:2:78:-2.40377,0,-44.0288 dDocent_Contig_10974 53 . G A 1729.47 . AB=0.425676;ABP=10.1116;AC=4;AF=0.5;AN=8;AO=63;CIGAR=1X;DP=148;DPB=148;DPRA=0;EPP=139.813;EPPR=187.585;GTI=0;LEN=1;MEANALT=1;MQM=59.8571;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2484;QR=3280;RO=85;RPL=63;RPP=139.813;RPPR=187.585;RPR=0;RUN=1;SAF=63;SAP=139.813;SAR=0;SRF=85;SRP=187.585;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:48:23,25:23:930:25:996:-75.4881,0,-69.5544 0/1:44:27,17:27:986:17:655:-46.0314,0,-75.7739 0/1:38:23,15:23:889:15:588:-41.8144,0,-68.8655 0/1:18:12,6:12:475:6:245:-17.0109,0,-37.683 dDocent_Contig_10975 7 . A T 342.889 . AB=0.319149;ABP=16.3625;AC=2;AF=0.25;AN=8;AO=17;CIGAR=1X;DP=150;DPB=150;DPRA=0.380952;EPP=39.9253;EPPR=291.816;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=633;QR=5118;RO=133;RPL=0;RPP=39.9253;RPPR=291.816;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=133;SRP=291.816;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:70:70,0:70:2697:0:0:0,-21.0721,-242.917 0/0:33:31,2:31:1196:2:65:0,-3.76179,-101.765 0/1:37:29,8:29:1108:8:296:-15.8499,0,-88.8841 0/1:10:3,7:3:117:7:272:-21.8369,0,-7.90008 dDocent_Contig_10976 24 . C T 120.466 . AB=0.3125;ABP=7.89611;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=52;DPB=52;DPRA=1.33333;EPP=13.8677;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=202;QR=1896;RO=47;RPL=0;RPP=13.8677;RPPR=105.07;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:14:14,0:14:569:0:0:0,-4.21442,-51.5523 0/1:16:11,5:11:438:5:202:-13.7456,0,-34.9539 0/0:15:15,0:15:606:0:0:0,-4.51545,-54.879 0/0:7:7,0:7:283:0:0:0,-2.10721,-25.8434 dDocent_Contig_10977 19 . T C 2140.65 . AB=0.528986;ABP=4.01736;AC=4;AF=0.5;AN=8;AO=73;CIGAR=1X;DP=138;DPB=138;DPRA=0;EPP=161.528;EPPR=144.156;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.931507;PAIREDR=0.784615;PAO=0;PQA=0;PQR=0;PRO=0;QA=2908;QR=2212;RO=65;RPL=0;RPP=161.528;RPPR=144.156;RPR=73;RUN=1;SAF=73;SAP=161.528;SAR=0;SRF=65;SRP=144.156;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:44:29,15:29:973:15:605:-41.5423,0,-74.6216 0/1:44:11,33:11:363:33:1303:-104.279,0,-19.7402 0/1:33:17,16:17:585:16:642:-48.1785,0,-43.0337 0/1:17:8,9:8:291:9:358:-27.4629,0,-21.4203 dDocent_Contig_10978 64 . C T 339.993 . AB=0.297297;ABP=29.4201;AC=4;AF=0.5;AN=8;AO=22;CIGAR=1X;DP=74;DPB=74;DPRA=0;EPP=50.7827;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=683;QR=1775;RO=52;RPL=22;RPP=50.7827;RPPR=115.927;RPR=0;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:17,5:17:579:5:161:-8.18575,0,-45.8102 0/1:32:18,14:18:625:14:418:-28.2746,0,-46.9432 0/1:18:16,2:16:536:2:69:-1.13412,0,-43.141 0/1:2:1,1:1:35:1:35:-2.89657,0,-2.89657 dDocent_Contig_10979 10 . A C 620.327 . AB=0.352941;ABP=15.7837;AC=3;AF=0.375;AN=8;AO=24;CIGAR=1X;DP=73;DPB=73;DPRA=4.53333;EPP=55.1256;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=57.9583;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.416667;PAIREDR=0.55102;PAO=0;PQA=0;PQR=0;PRO=0;QA=974;QR=1917;RO=49;RPL=0;RPP=55.1256;RPPR=109.412;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:21,6:21:840:6:242:-14.0186,0,-67.7841 0/1:25:11,14:11:420:14:570:-43.2617,0,-30.6191 0/1:16:12,4:12:456:4:162:-10.1503,0,-36.56 0/0:5:5,0:5:201:0:0:0,-1.50515,-18.4707 dDocent_Contig_10980 11 . G A 860.514 . AB=0.164835;ABP=180.594;AC=3;AF=0.375;AN=8;AO=30;CIGAR=5M1X2M;DP=182;DPB=181.25;DPRA=0;EPP=68.1545;EPPR=274.444;GTI=0;LEN=1;MEANALT=2.75;MQM=46.1333;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=0.52;PAO=0;PQA=0;PQR=0;PRO=0;QA=1180;QR=4814;RO=125;RPL=0;RPP=68.1545;RPPR=274.444;RPR=30;RUN=1;SAF=30;SAP=68.1545;SAR=0;SRF=125;SRP=274.444;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:70:53,0,2,13:53:2033:0,2,13:0,81,525:-27.3781,-43.3327,-210.199,-36.9343,-203.801,-203.199,0,-166.915,-160.516,-163.001 0|1:44:26,0,13,5:26:1002:0,13,5:0,518,202:-33.6577,-41.4845,-123.76,0,-82.2639,-78.3506,-24.827,-107.104,-65.6078,-105.599 0|1:53:36,5,11,1:36:1390:5,11,1:132,427,40:-23.1525,-25.0091,-137.669,0,-105.261,-110.954,-30.6905,-135.879,-110.97,-144.586 0|1:15:10,1,4,0:10:389:1,4,0:32,154,0:-9.26105,-9.97969,-41.6595,0,-29.7598,-30.8549,-12.2713,-41.9605,-32.059,-44.2624 dDocent_Contig_10981 70 . G A 144.954 . AB=0.275862;ABP=15.6647;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X;DP=80;DPB=80;DPRA=1.16216;EPP=22.5536;EPPR=157.185;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=308;QR=2616;RO=71;RPL=9;RPP=22.5536;RPPR=157.185;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=71;SRP=157.185;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:21,8:21:757:8:270:-15.893,0,-59.7193 0/0:14:14,0:14:525:0:0:0,-4.21442,-47.5901 0/0:23:23,0:23:849:0:0:0,-6.92369,-76.7283 0/0:14:13,1:13:485:1:38:0,-0.417151,-40.1958 dDocent_Contig_10982 21 . G A 301.682 . AB=0.25;ABP=31.2394;AC=2;AF=0.25;AN=8;AO=14;CIGAR=1X4M;DP=99;DPB=99;DPRA=3.33333;EPP=33.4109;EPPR=150.67;GTI=0;LEN=1;MEANALT=2.66667;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=563;QR=2675;RO=68;RPL=0;RPP=33.4109;RPPR=150.67;RPR=14;RUN=1;SAF=0;SAP=33.4109;SAR=14;SRF=68;SRP=150.67;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:38:28,7,2,1:28:1087:7,2,1:276,67,39:0,-4.41638,-91.6447,-2.96526,-88.3315,-91.8631,-5.19921,-90.5458,-89.2576,-94.3807 0|1:32:22,4,0,5:22:871:4,0,5:158,0,203:-10.2775,-14.6044,-85.1236,-16.9002,-86.3277,-88.6863,0,-69.5808,-71.9335,-70.4284 0|1:20:11,0,0,8:11:436:0,0,8:0,0,321:-23.2885,-26.5998,-62.4956,-26.5998,-62.4956,-62.4956,0,-36.0402,-36.0402,-33.6319 0|0:9:7,2,0,0:7:281:2,0,0:79,0,0:0,-0.810108,-23.7636,-2.10721,-24.3657,-25.4959,-2.10721,-24.3657,-25.4959,-25.4959 dDocent_Contig_10983 56 . G A 735.009 . AB=0.424242;ABP=6.30041;AC=4;AF=0.5;AN=8;AO=28;CIGAR=1X;DP=66;DPB=66;DPRA=0;EPP=63.8115;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.3684;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.973684;PAO=0;PQA=0;PQR=0;PRO=0;QA=1084;QR=1472;RO=38;RPL=28;RPP=63.8115;RPPR=85.5263;RPR=0;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:10,8:10:394:8:322:-23.9298,0,-30.3994 0/1:15:13,2:13:523:2:49:-0.134387,0,-42.9014 0/1:27:12,15:12:439:15:590:-45.309,0,-31.6821 0/1:6:3,3:3:116:3:123:-9.65861,0,-9.01084 dDocent_Contig_10984 13 . C T 3137.49 . AB=0.602564;ABP=17.2641;AC=5;AF=0.625;AN=8;AO=102;CIGAR=3X1M1X;DP=164;DPB=164;DPRA=0;EPP=224.5;EPPR=122.441;GTI=0;LEN=1;MEANALT=1.75;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4044;QR=2153;RO=55;RPL=0;RPP=224.5;RPPR=122.441;RPR=102;RUN=1;SAF=102;SAP=224.5;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:42:16,22,4:16:620:22,4:866,156:-66.4216,0,-44.3025,-58.4165,-38.1025,-108.137 0|1:92:32,59,1:32:1254:59,1:2348,36:-183.735,0,-85.3787,-190.431,-100.203,-293.237 0|1:22:7,13,2:7:279:13,2:510,81:-39.822,0,-19.058,-35.2484,-16.2908,-57.6248 1|1:8:0,8,0:0:0:8,0:320,0:-29.1679,-2.40824,0,-29.1679,-2.40824,-29.1679 dDocent_Contig_10985 18 . C T 670.114 . AB=0.201005;ABP=157.534;AC=4;AF=0.5;AN=8;AO=40;CIGAR=1X;DP=199;DPB=199;DPRA=0;EPP=89.8692;EPPR=343.931;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.975;PAIREDR=0.904459;PAO=0;PQA=0;PQR=0;PRO=0;QA=1472;QR=6189;RO=157;RPL=0;RPP=89.8692;RPPR=343.931;RPR=40;RUN=1;SAF=40;SAP=89.8692;SAR=0;SRF=157;SRP=343.931;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:73:62,11:62:2485:11:418:-15.996,0,-201.815 0/1:59:49,8:49:1924:8:291:-9.22551,0,-156.081 0/1:52:38,14:38:1463:14:499:-29.5848,0,-116.266 0/1:15:8,7:8:317:7:264:-19.603,0,-24.3784 dDocent_Contig_10986 22 . C G 123.097 . AB=0.357143;ABP=5.49198;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=61;DPB=61;DPRA=0.893617;EPP=13.8677;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=195;QR=2254;RO=56;RPL=0;RPP=13.8677;RPPR=124.613;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:9,5:9:362:5:195:-13.7074,0,-28.7299 0/0:2:2,0:2:82:0:0:0,-0.60206,-7.77968 0/0:18:18,0:18:709:0:0:0,-5.41854,-64.1345 0/0:27:27,0:27:1101:0:0:0,-8.12781,-99.3707 dDocent_Contig_10987 7 . A G 391.371 . AB=0.111111;ABP=50.3001;AC=0;AF=0;AN=8;AO=4;CIGAR=1X2M1X;DP=100;DPB=100;DPRA=0;EPP=11.6962;EPPR=161.528;GTI=0;LEN=1;MEANALT=2;MQM=31.25;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=118;QR=2816;RO=73;RPL=0;RPP=11.6962;RPPR=161.528;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=73;SRP=161.528;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:13:10,0,3:10:388:0,3:0,122:-7.4591,-10.4694,-42.3352,0,-32.2677,-31.3646 0|0:36:27,4,5:27:1044:4,5:118,188:-6.98346,-7.63671,-92.2025,0,-78.3677,-84.3742 0|0:32:21,0,11:21:802:0,11:0,405:-26.3151,-32.6367,-98.451,0,-66.1813,-62.87 0|0:19:15,0,3:15:582:0,3:0,122:-5.77741,-10.2929,-58.1588,0,-48.0898,-47.1867 dDocent_Contig_10988 30 . C G 168.125 . AB=0.208333;ABP=38.4777;AC=2;AF=0.25;AN=8;AO=16;CIGAR=1X;DP=243;DPB=243;DPRA=0;EPP=37.7539;EPPR=495.935;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=607;QR=8951;RO=227;RPL=0;RPP=37.7539;RPPR=495.935;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=227;SRP=495.935;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:84:83,1:83:3265:1:40:0,-21.2908,-289.942 0/0:111:106,5:106:4209:5:190:0,-15.948,-361.335 0/1:34:30,4:30:1165:4:146:-3.26177,0,-94.898 0/1:14:8,6:8:312:6:231:-16.9428,0,-24.2266 dDocent_Contig_10990 71 . T C 150.122 . AB=0.128571;ABP=170.772;AC=2;AF=0.25;AN=8;AO=19;CIGAR=1X;DP=174;DPB=174;DPRA=2.56667;EPP=44.2683;EPPR=339.589;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=702;QR=5623;RO=155;RPL=19;RPP=44.2683;RPPR=339.589;RPR=0;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=155;SRP=339.589;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:105:93,12:93:3373:12:443:-8.60776,0,-272.157 0/1:35:29,6:29:1053:6:222:-9.80201,0,-84.5464 0/0:20:20,0:20:727:0:0:0,-6.0206,-65.7583 0/0:14:13,1:13:470:1:37:0,-0.516591,-38.9413 dDocent_Contig_10991 20 . A C 238.596 . AB=0.191176;ABP=59.3408;AC=2;AF=0.25;AN=8;AO=13;CIGAR=1X;DP=123;DPB=123;DPRA=1.23636;EPP=31.2394;EPPR=241.872;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=522;QR=4378;RO=110;RPL=0;RPP=31.2394;RPPR=241.872;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=110;SRP=241.872;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:42:42,0:42:1683:0:0:0,-12.6433,-151.692 0/1:50:41,9:41:1633:9:361:-17.8008,0,-132.152 0/1:18:14,4:14:542:4:161:-9.45673,0,-43.699 0/0:13:13,0:13:520:0:0:0,-3.91339,-47.1424 dDocent_Contig_10993 15 . A G 103.281 . AB=0.10687;ABP=178.866;AC=1;AF=0.125;AN=8;AO=16;CIGAR=1X;DP=331;DPB=331;DPRA=1.14935;EPP=37.7539;EPPR=687.024;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=646;QR=12465;RO=315;RPL=0;RPP=37.7539;RPPR=687.024;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=315;SRP=687.024;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:124:124,0:124:4927:0:0:0,-37.3277,-443.322 0/1:131:117,14:117:4618:14:568:-12.0271,0,-376.115 0/0:46:44,2:44:1722:2:78:0,-6.4446,-147.804 0/0:30:30,0:30:1198:0:0:0,-9.0309,-108.095 dDocent_Contig_10994 12 . T A 342.659 . AB=0.188119;ABP=88.3427;AC=3;AF=0.375;AN=8;AO=20;CIGAR=1X;DP=115;DPB=115;DPRA=0;EPP=46.4397;EPPR=209.3;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=0.55;PAIREDR=0.578947;PAO=0;PQA=0;PQR=0;PRO=0;QA=805;QR=3741;RO=95;RPL=0;RPP=46.4397;RPPR=209.3;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=95;SRP=209.3;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:45:33,12:33:1312:12:481:-30.0924,0,-104.799 0/1:25:21,4:21:838:4:162:-7.44121,0,-68.2077 0/1:31:28,3:28:1092:3:122:-2.04056,0,-89.2287 0/0:14:13,1:13:499:1:40:0,-0.218741,-41.2595 dDocent_Contig_10997 1 . N G 89.482 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=89;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:49:-4.64984,-0.60206,0 1/1:1:0,1:0:0:1:40:-3.99568,-0.30103,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_10998 22 . G A 43.7749 . AB=0.115385;ABP=69.8248;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=127;DPB=127;DPRA=2.08;EPP=16.0391;EPPR=265.758;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.975207;PAO=0;PQA=0;PQR=0;PRO=0;QA=234;QR=4810;RO=121;RPL=0;RPP=16.0391;RPPR=265.758;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=121;SRP=265.758;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:52:46,6:46:1833:6:234:-5.7754,0,-149.52 0/0:53:53,0:53:2108:0:0:0,-15.9546,-189.891 0/0:16:16,0:16:644:0:0:0,-4.81648,-58.2927 0/0:6:6,0:6:225:0:0:0,-1.80618,-20.606 dDocent_Contig_10999 20 . C A 1261.8 . AB=0.367647;ABP=23.7032;AC=4;AF=0.5;AN=8;AO=50;CIGAR=2X2M1X;DP=136;DPB=136;DPRA=0;EPP=111.584;EPPR=187.585;GTI=0;LEN=1;MEANALT=1.25;MQM=59.86;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1925;QR=3348;RO=85;RPL=0;RPP=111.584;RPPR=187.585;RPR=50;RUN=1;SAF=50;SAP=111.584;SAR=0;SRF=85;SRP=187.585;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:26:20,6:20:790:6:239:-14.0586,0,-63.5967 0|1:38:18,20:18:702:20:790:-59.9844,0,-52.0705 0|1:42:26,15:26:1027:15:563:-38.2516,0,-79.9902 0|1:30:21,9:21:829:9:333:-21.2833,0,-65.8993 dDocent_Contig_11000 29 . A C 477.114 . AB=0.283784;ABP=33.0588;AC=4;AF=0.5;AN=8;AO=21;CIGAR=1X;DP=74;DPB=74;DPRA=0;EPP=48.6112;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=51.4286;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.924528;PAO=0;PQA=0;PQR=0;PRO=0;QA=846;QR=2114;RO=53;RPL=0;RPP=48.6112;RPPR=118.098;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:32:22,10:22:872:10:402:-26.5395,0,-69.1564 0/1:20:18,2:18:723:2:82:-1.67156,0,-59.3734 0/1:14:7,7:7:281:7:280:-21.2377,0,-21.4478 0/1:8:6,2:6:238:2:82:-5.28392,0,-19.385 dDocent_Contig_11001 35 . G A 101.752 . AB=0.227273;ABP=17.2236;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=63;DPB=63;DPRA=1.60976;EPP=13.8677;EPPR=128.956;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=198;QR=2321;RO=58;RPL=0;RPP=13.8677;RPPR=128.956;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:17,5:17:667:5:198:-11.5731,0,-53.7364 0/0:17:17,0:17:686:0:0:0,-5.11751,-62.0684 0/0:20:20,0:20:804:0:0:0,-6.0206,-72.6747 0/0:4:4,0:4:164:0:0:0,-1.20412,-15.1499 dDocent_Contig_11002 154 . T C 94.8854 . AB=0.159091;ABP=47.4268;AC=2;AF=0.25;AN=8;AO=7;CIGAR=1X;DP=79;DPB=79;DPRA=1.25714;EPP=18.2106;EPPR=159.356;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.0833;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.75;PAO=0;PQA=0;PQR=0;PRO=0;QA=265;QR=2755;RO=72;RPL=0;RPP=18.2106;RPPR=159.356;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=159.356;SRR=72;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:32:26,6:26:1009:6:224:-10.8832,0,-80.4962 0/0:26:26,0:26:955:0:0:0,-7.82678,-86.2259 0/1:12:11,1:11:442:1:41:-0.482207,0,-36.5221 0/0:9:9,0:9:349:0:0:0,-2.70927,-31.768 dDocent_Contig_11003 16 . T G 2677.95 . AB=0.0676692;ABP=218.933;AC=5;AF=0.625;AN=8;AO=10;CIGAR=1X4M1X2M2I2M;DP=159;DPB=181.6;DPRA=0;EPP=24.725;EPPR=102.898;GTI=0;LEN=1;MEANALT=3.5;MQM=53.6;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=0.7;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=361;QR=1810;RO=46;RPL=0;RPP=24.725;RPPR=102.898;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:49:16,29,1,3:16:626:29,1,3:1118,40,110:-80.9643,0,-42.7537,-82.5384,-48.2418,-133.716,-76.792,-42.4987,-125.029,-127.368 0|1:45:15,23,2,3:15:593:23,2,3:871,75,104:-65.9241,0,-41.8973,-64.2965,-42.6792,-112.503,-62.2615,-40.6468,-104.926,-110.165 0|1:39:14,19,2,3:14:551:19,2,3:723,80,107:-53.2054,0,-39.6236,-50.9348,-38.8594,-95.6698,-48.9994,-36.9267,-87.8509,-93.4316 1|1:26:1,23,0,1:1:40:23,0,1:871,0,40:-73.0994,-3.62696,0,-73.4004,-6.92369,-76.6965,-70.1042,-3.62696,-73.4004,-73.0994 dDocent_Contig_11004 84 . C T 154.282 . AB=0.35;ABP=6.91895;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=38;DPB=38;DPRA=3.33333;EPP=18.2106;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=250;QR=1075;RO=31;RPL=7;RPP=18.2106;RPPR=70.3259;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:13,7:13:447:7:250:-16.8261,0,-34.5383 0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9449 0/0:5:5,0:5:174:0:0:0,-1.50515,-16.002 0/0:9:9,0:9:314:0:0:0,-2.70927,-28.5979 dDocent_Contig_11005 37 . C T 1933.19 . AB=0.265306;ABP=26.4533;AC=4;AF=0.5;AN=8;AO=62;CIGAR=1X;DP=152;DPB=152;DPRA=0;EPP=137.642;EPPR=198.443;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2487;QR=3606;RO=90;RPL=0;RPP=137.642;RPPR=198.443;RPR=62;RUN=1;SAF=62;SAP=137.642;SAR=0;SRF=90;SRP=198.443;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:58:54,4:54:2151:4:148:0,-3.77996,-180.074 1/1:45:0,45:0:0:45:1812:-163.285,-13.5464,0 0/1:24:18,6:18:726:6:242:-14.9326,0,-58.4392 0/1:25:18,7:18:729:7:285:-18.4987,0,-58.4081 dDocent_Contig_11006 42 . T A 673.76 . AB=0.304348;ABP=10.6577;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1M3D10M1X1M5D2M1X2M1X3M1X;DP=76;DPB=68.6129;DPRA=2.3;EPP=18.2106;EPPR=83.3548;GTI=0;LEN=1;MEANALT=5;MQM=60;MQMR=60;NS=4;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=268;QR=1456;RO=37;RPL=0;RPP=18.2106;RPPR=83.3548;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:23:10,7,3,0,0:10:398:7,3,0,0:268,100,0,0:-19.0199,0,-30.718,-13.9447,-24.7421,-45.835,-22.0302,-32.8252,-46.7381,-54.8231,-22.0302,-32.8252,-46.7381,-54.8231,-54.8231 0|0:25:13,0,9,2,0:13:504:0,9,2,0:0,340,79,0:-23.9507,-27.8641,-69.2749,0,-41.4099,-38.7007,-21.36,-62.773,-34.9078,-62.1709,-27.8641,-69.2749,-41.4099,-62.773,-69.2749 0|0:10:10,0,0,0,0:10:398:0,0,0,0:0,0,0,0:0,-3.0103,-36.1803,-3.0103,-36.1803,-36.1803,-3.0103,-36.1803,-36.1803,-36.1803,-3.0103,-36.1803,-36.1803,-36.1803,-36.1803 0|0:18:4,0,10,0,4:4:156:0,10,0,4:0,378,0,142:-29.7978,-31.0019,-43.8291,0,-12.8405,-9.8302,-31.0019,-43.8291,-12.8405,-43.8291,-19.4416,-32.2681,-1.29103,-32.2681,-31.0639 dDocent_Contig_11007 16 . C T 54.9921 . AB=0.148148;ABP=32.0437;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=58;DPB=58;DPRA=1.74194;EPP=11.6962;EPPR=120.27;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.833333;PAO=0;PQA=0;PQR=0;PRO=0;QA=164;QR=2146;RO=54;RPL=0;RPP=11.6962;RPPR=120.27;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:23,4:23:913:4:164:-7.02209,0,-74.3464 0/0:18:18,0:18:722:0:0:0,-5.41854,-65.3058 0/0:13:13,0:13:511:0:0:0,-3.91339,-46.3367 ./.:.:.:.:.:.:.:. dDocent_Contig_11008 20 . G C 74.0325 . AB=0;ABP=0;AC=0;AF=0;AN=8;AO=2;CIGAR=5M1X1M;DP=87;DPB=87.7143;DPRA=1.625;EPP=7.35324;EPPR=176.728;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=3122;RO=80;RPL=0;RPP=7.35324;RPPR=176.728;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=80;SRP=176.728;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:26:24,0,2:24:926:0,2:0,82:0,-7.22472,-83.244,-0.0471021,-76.474,-75.872 0|0:25:25,0,0:25:983:0,0:0,0:0,-7.52575,-88.7774,-7.52575,-88.7774,-88.7774 0|0:29:24,5,0:24:937:5,0:194,0:-9.10123,0,-75.9124,-16.3259,-77.4176,-93.3555 0|0:7:7,0,0:7:276:0,0:0,0:0,-2.10721,-25.2094,-2.10721,-25.2094,-25.2094 dDocent_Contig_11009 12 . T C 410.369 . AB=0.310345;ABP=21.1309;AC=4;AF=0.5;AN=8;AO=18;CIGAR=1X;DP=58;DPB=58;DPRA=0;EPP=42.0968;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=715;QR=1599;RO=40;RPL=0;RPP=42.0968;RPPR=89.8692;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:16,4:16:639:4:156:-8.39352,0,-51.8222 0/1:18:14,4:14:561:4:162:-9.54821,0,-45.4146 0/1:15:9,6:9:358:6:236:-17.0959,0,-28.066 0/1:5:1,4:1:41:4:161:-13.3701,0,-2.58942 dDocent_Contig_11010 8 . A T 143.373 . AB=0.285714;ABP=14.1779;AC=2;AF=0.25;AN=8;AO=8;CIGAR=1X;DP=54;DPB=54;DPRA=1.07692;EPP=20.3821;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=283;QR=1756;RO=46;RPL=0;RPP=20.3821;RPPR=102.898;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:17,3:17:644:3:109:-4.14669,0,-52.2754 0/1:8:3,5:3:117:5:174:-13.5877,0,-8.50214 0/0:19:19,0:19:731:0:0:0,-5.71957,-66.1207 0/0:7:7,0:7:264:0:0:0,-2.10721,-24.1196 dDocent_Contig_11012 138 . C A 192.622 . AB=0.357143;ABP=7.97367;AC=2;AF=0.25;AN=8;AO=10;CIGAR=1X;DP=51;DPB=51;DPRA=1.21739;EPP=24.725;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=338;QR=1295;RO=41;RPL=0;RPP=24.725;RPPR=92.0407;RPR=10;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=92.0407;SRR=41;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:14,7:14:416:7:235:-15.1574,0,-31.4055 0/1:7:4,3:4:126:3:103:-7.50276,0,-9.54513 0/0:14:14,0:14:455:0:0:0,-4.21442,-41.2626 0/0:9:9,0:9:298:0:0:0,-2.70927,-27.1428 dDocent_Contig_11013 71 . C T 953.339 . AB=0.5;ABP=3.0103;AC=3;AF=0.375;AN=8;AO=37;CIGAR=1X;DP=93;DPB=93;DPRA=1.29825;EPP=83.3548;EPPR=122.441;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1356;QR=1966;RO=55;RPL=37;RPP=83.3548;RPPR=122.441;RPR=0;RUN=1;SAF=37;SAP=83.3548;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:5:3,2:3:111:2:68:-4.95227,0,-8.84877 0/1:37:26,11:26:907:11:409:-26.0209,0,-70.7987 0/1:32:7,24:7:258:24:879:-69.7586,0,-13.8997 0/0:19:19,0:19:690:0:0:0,-5.71957,-62.4302 dDocent_Contig_11014 12 . G C 1588.48 . AB=0.060241;ABP=421.267;AC=4;AF=0.5;AN=8;AO=15;CIGAR=6M1X4M;DP=249;DPB=243.091;DPRA=0;EPP=35.5824;EPPR=311.359;GTI=0;LEN=1;MEANALT=4.75;MQM=51;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=0.6;PAIREDR=0.93662;PAO=0;PQA=0;PQR=0;PRO=0;QA=544;QR=5511;RO=142;RPL=0;RPP=35.5824;RPPR=311.359;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=142;SRP=311.359;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:75:38,28,3,1:38:1473:28,3,1:1046,107,34:-72.9178,0,-112.612,-75.638,-112.322,-195.76,-81.5996,-118.283,-193.906,-202.323 0|1:42:24,8,0,10:24:931:8,0,10:309,0,394:-24.7278,-6.83068,-80.9101,-31.9525,-83.3183,-108.442,0,-51.3689,-76.4921,-73.4818 0|1:85:62,8,7,3:62:2413:8,7,3:303,260,93:-5.98007,0,-195.985,-11.0525,-184.785,-207.289,-17.9947,-191.742,-202.745,-215.451 0|1:47:18,23,4,1:18:694:23,4,1:863,156,23:-62.6199,0,-50.0981,-56.4925,-45.4792,-112.287,-66.2741,-55.2591,-111.725,-122.969 dDocent_Contig_11015 130 . C T 497.093 . AB=0.567568;ABP=4.47751;AC=1;AF=0.125;AN=8;AO=22;CIGAR=1X;DP=148;DPB=148;DPRA=0.947368;EPP=50.7827;EPPR=276.616;GTI=0;LEN=1;MEANALT=1;MQM=40;MQMR=59.3571;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=732;QR=4246;RO=126;RPL=0;RPP=50.7827;RPPR=276.616;RPR=22;RUN=1;SAF=0;SAP=50.7827;SAR=22;SRF=0;SRP=276.616;SRR=126;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:37:16,21:16:548:21:709:-51.1073,0,-38.5068 0/0:35:34,1:34:1125:1:23:0,-8.24459,-99.254 0/0:44:44,0:44:1473:0:0:0,-13.2453,-130.725 0/0:32:32,0:32:1100:0:0:0,-9.63296,-99.3081 dDocent_Contig_11016 126 . T A 45.0651 . AB=0.272727;ABP=7.94546;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=100;DPB=100;DPRA=0.370787;EPP=9.52472;EPPR=213.643;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=102;QR=3221;RO=97;RPL=0;RPP=9.52472;RPPR=213.643;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=213.643;SRR=97;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:39:39,0:39:1267:0:0:0,-11.7402,-114.32 0/1:11:8,3:8:275:3:102:-6.20547,0,-21.7736 0/0:31:31,0:31:1040:0:0:0,-9.33193,-93.9035 0/0:19:19,0:19:639:0:0:0,-5.71957,-57.8271 dDocent_Contig_11018 1 . N G 71.1989 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=75;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:75:-7.1188,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_11019 35 . G T 248.594 . AB=0.234043;ABP=31.8863;AC=1;AF=0.125;AN=8;AO=11;CIGAR=1X;DP=116;DPB=116;DPRA=2.04348;EPP=26.8965;EPPR=231.015;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=445;QR=4180;RO=105;RPL=0;RPP=26.8965;RPPR=231.015;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=105;SRP=231.015;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:47:36,11:36:1415:11:445:-26.2573,0,-113.458 0/0:21:21,0:21:849:0:0:0,-6.32163,-76.7213 0/0:37:37,0:37:1477:0:0:0,-11.1381,-133.178 0/0:11:11,0:11:439:0:0:0,-3.31133,-39.8632 dDocent_Contig_11021 13 . G T 129.894 . AB=0.26087;ABP=14.4341;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=95;DPB=95;DPRA=1.02128;EPP=18.2106;EPPR=194.1;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=277;QR=3521;RO=88;RPL=0;RPP=18.2106;RPPR=194.1;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=88;SRP=194.1;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:46:46,0:46:1857:0:0:0,-13.8474,-167.334 0/1:23:17,6:17:683:6:236:-14.6878,0,-54.8758 0/0:25:24,1:24:940:1:41:0,-3.43118,-80.7991 0/0:1:1,0:1:41:0:0:0,-0.30103,-4.09457 dDocent_Contig_11022 20 . A C 166.448 . AB=0.18;ABP=47.4821;AC=1;AF=0.125;AN=8;AO=14;CIGAR=1X;DP=162;DPB=162;DPRA=2.76744;EPP=33.4109;EPPR=324.388;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=566;QR=5785;RO=148;RPL=0;RPP=33.4109;RPPR=324.388;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=148;SRP=324.388;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:69:64,5:64:2464:5:199:0,-2.48271,-203.619 0/1:50:41,9:41:1629:9:367:-18.3438,0,-131.776 0/0:27:27,0:27:1069:0:0:0,-8.12781,-96.4993 0/0:16:16,0:16:623:0:0:0,-4.81648,-56.4025 dDocent_Contig_11023 94 . C A 69.6346 . AB=0.307692;ABP=7.18621;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=50;DPB=50;DPRA=1.05405;EPP=11.6962;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=136;QR=1587;RO=46;RPL=4;RPP=11.6962;RPPR=102.898;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:12:12,0:12:413:0:0:0,-3.61236,-37.501 0/1:13:9,4:9:309:4:136:-8.66243,0,-24.2301 0/0:12:12,0:12:417:0:0:0,-3.61236,-37.8633 0/0:13:13,0:13:448:0:0:0,-3.91339,-40.6501 dDocent_Contig_11024 14 . T A 370.057 . AB=0.1875;ABP=16.582;AC=0;AF=0;AN=8;AO=3;CIGAR=1X3M2I3M1X;DP=133;DPB=134;DPRA=0.592593;EPP=9.52472;EPPR=233.186;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=105;QR=4195;RO=106;RPL=0;RPP=9.52472;RPPR=233.186;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=106;SRP=233.186;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:16:7,3,6:7:270:3,6:105,242:-17.8761,-11.4594,-32.7152,0,-13.6623,-20.387 0|0:31:24,0,7:24:956:0,7:0,282:-16.4202,-23.6449,-102.365,0,-79.1214,-77.0142 0|0:59:50,0,7:50:1984:0,7:0,281:-8.10694,-23.1584,-186.471,0,-163.317,-161.209 0|0:27:25,0,2:25:985:0,2:0,82:0,-7.52575,-88.545,-0.348132,-81.7756,-81.1736 dDocent_Contig_11026 138 . G A 108.489 . AB=0.0869565;ABP=71.1757;AC=0;AF=0;AN=8;AO=4;CIGAR=2X;DP=135;DPB=135;DPRA=1.55056;EPP=11.6962;EPPR=270.101;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=152;QR=4568;RO=123;RPL=0;RPP=11.6962;RPPR=270.101;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=270.101;SRR=123;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:46:34,4,7:34:1287:4,7:152,273:-12.2469,-10.0064,-114.334,0,-93.0939,-103.454 0|0:29:29,0,0:29:1101:0,0:0,0:0,-8.72987,-99.3908,-8.72987,-99.3908,-99.3908 0|0:36:36,0,0:36:1327:0,0:0,0:0,-10.8371,-119.726,-10.8371,-119.726,-119.726 0|0:24:24,0,0:24:853:0,0:0,0:0,-7.22472,-77.0828,-7.22472,-77.0828,-77.0828 dDocent_Contig_11027 17 . C T 36.6384 . AB=0.0571429;ABP=62.6327;AC=0;AF=0;AN=8;AO=2;CIGAR=11M1X;DP=71;DPB=70.5833;DPRA=0;EPP=7.35324;EPPR=128.956;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=79;QR=2259;RO=58;RPL=0;RPP=7.35324;RPPR=128.956;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:35:29,3,2:29:1119:3,2:112,79:-0.430318,0,-90.9798,-2.65343,-85.3814,-93.9483 0|0:16:13,3,0:13:511:3,0:109,0:-5.35029,0,-41.5227,-9.26368,-42.4258,-51.3208 0|0:10:8,1,0:8:313:1,0:35,0:-0.4196,0,-25.436,-2.82784,-25.737,-28.5806 0|0:10:8,1,0:8:316:1,0:39,0:-0.797638,0,-25.707,-3.20588,-26.0081,-29.2135 dDocent_Contig_11028 28 . C A 37.0012 . AB=0.157895;ABP=22.325;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=87;DPB=87;DPRA=0.838235;EPP=9.52472;EPPR=185.414;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=116;QR=3355;RO=84;RPL=0;RPP=9.52472;RPPR=185.414;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=84;SRP=185.414;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:16,3:16:635:3:116:-5.09797,0,-51.7647 0/0:28:28,0:28:1111:0:0:0,-8.42884,-100.266 0/0:32:32,0:32:1293:0:0:0,-9.63296,-116.63 0/0:8:8,0:8:316:0:0:0,-2.40824,-28.8056 dDocent_Contig_11030 209 . N G 76.8682 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:81:-7.68573,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_11032 162 . A T 339.211 . AB=0.733333;ABP=10.1038;AC=1;AF=0.125;AN=8;AO=11;CIGAR=1X;DP=32;DPB=32;DPRA=2.64706;EPP=19.0002;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=442;QR=804;RO=21;RPL=10;RPP=19.0002;RPPR=48.6112;RPR=1;RUN=1;SAF=0;SAP=26.8965;SAR=11;SRF=0;SRP=48.6112;SRR=21;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:8:8,0:8:301:0:0:0,-2.40824,-27.4404 0/1:15:4,11:4:148:11:442:-35.6195,0,-9.16133 0/0:8:8,0:8:314:0:0:0,-2.40824,-28.6241 0/0:1:1,0:1:41:0:0:0,-0.30103,-4.09457 dDocent_Contig_11033 18 . C T 147.871 . AB=0.25;ABP=22.5536;AC=2;AF=0.25;AN=8;AO=9;CIGAR=1X;DP=63;DPB=63;DPRA=1.33333;EPP=22.5536;EPPR=120.27;GTI=0;LEN=1;MEANALT=1;MQM=54.6667;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.888889;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=342;QR=2083;RO=54;RPL=0;RPP=22.5536;RPPR=120.27;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:13,5:13:485:5:188:-11.8651,0,-38.5719 0/0:22:22,0:22:851:0:0:0,-6.62266,-76.9101 0/1:18:14,4:14:548:4:154:-6.31985,0,-44.2463 0/0:5:5,0:5:199:0:0:0,-1.50515,-18.2885 dDocent_Contig_11034 15 . T G 1464.82 . AB=0.244361;ABP=154.001;AC=4;AF=0.5;AN=8;AO=65;CIGAR=1M1D1X;DP=266;DPB=244.333;DPRA=0;EPP=144.156;EPPR=437.305;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=0.784615;PAIREDR=0.8;PAO=0;PQA=0;PQR=0;PRO=0;QA=2585;QR=7917;RO=200;RPL=0;RPP=144.156;RPPR=437.305;RPR=65;RUN=1;SAF=65;SAP=144.156;SAR=0;SRF=200;SRP=437.305;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:81:69,12:69:2731:12:481:-19.2554,0,-221.529 0|1:95:61,33:61:2418:33:1327:-91.0984,0,-189.193 0|1:67:54,13:54:2134:13:520:-26.9777,0,-172.079 0|1:23:16,7:16:634:7:257:-16.5483,0,-50.469 dDocent_Contig_11035 22 . T A 671.795 . AB=0.545455;ABP=3.79993;AC=4;AF=0.5;AN=8;AO=24;CIGAR=1X;DP=44;DPB=44;DPRA=0;EPP=55.1256;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=949;QR=799;RO=20;RPL=0;RPP=55.1256;RPPR=46.4397;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:11,3:11:435:3:116:-6.60257,0,-35.2882 0/1:9:5,4:5:201:4:158:-11.8901,0,-15.7612 0/1:10:1,9:1:41:9:360:-29.7526,0,-1.08427 0/1:11:3,8:3:122:8:315:-25.4035,0,-8.06116 dDocent_Contig_11036 51 . C T 3096.4 . AB=0.0571429;ABP=62.6327;AC=0;AF=0;AN=8;AO=2;CIGAR=2X;DP=196;DPB=196;DPRA=0;EPP=7.35324;EPPR=191.928;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.873563;PAO=0;PQA=0;PQR=0;PRO=0;QA=76;QR=3435;RO=87;RPL=2;RPP=7.35324;RPPR=191.928;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=87;SRP=191.928;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:61:23,0,38:23:909:0,38:0,1517:-118.411,-125.335,-200.131,0,-75.1932,-63.754 0|0:62:39,0,23:39:1555:0,23:0,892:-61.9221,-73.6623,-201.717,0,-128.446,-121.523 0|0:38:9,0,28:9:345:0,28:0,1078:-85.7614,-88.4707,-116.776,0,-28.2909,-19.862 0|0:35:16,2,17:16:626:2,17:76,677:-50.9434,-49.5293,-100.387,0,-45.2414,-46.3552 dDocent_Contig_11037 13 . A G 272.98 . AB=0.315789;ABP=14.2105;AC=2;AF=0.25;AN=8;AO=13;CIGAR=1X;DP=69;DPB=69;DPRA=1.75758;EPP=31.2394;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=47.0769;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.964286;PAO=0;PQA=0;PQR=0;PRO=0;QA=514;QR=2158;RO=56;RPL=0;RPP=31.2394;RPPR=124.613;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:11,0:11:431:0:0:0,-3.31133,-39.1408 0/1:22:14,8:14:520:8:325:-22.2161,0,-40.503 0/0:20:19,1:19:748:1:41:0,-1.96199,-63.5854 0/1:16:12,4:12:459:4:148:-8.47989,0,-36.8381 dDocent_Contig_11038 7 . T C 122.724 . AB=0.205128;ABP=32.4644;AC=2;AF=0.25;AN=8;AO=8;CIGAR=1X;DP=60;DPB=60;DPRA=1.85714;EPP=20.3821;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=51;MQMR=49.6154;NS=4;NUMALT=1;ODDS=0;PAIRED=0.25;PAIREDR=0.653846;PAO=0;PQA=0;PQR=0;PRO=0;QA=299;QR=1974;RO=52;RPL=0;RPP=20.3821;RPPR=115.927;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:13,3:13:495:3:111:-5.43479,0,-32.5795 0/1:23:18,5:18:672:5:188:-10.2355,0,-50.3255 0/0:9:9,0:9:346:0:0:0,-2.70927,-31.0679 0/0:12:12,0:12:461:0:0:0,-3.61236,-39.6067 dDocent_Contig_11040 12 . T G 343.286 . AB=0.571429;ABP=3.32051;AC=4;AF=0.5;AN=8;AO=4;CIGAR=1M7I1X1M1X1M1X;DP=49;DPB=68.8333;DPRA=0.269231;EPP=11.6962;EPPR=72.4974;GTI=0;LEN=1;MEANALT=2;MQM=57;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=158;QR=1245;RO=32;RPL=0;RPP=11.6962;RPPR=72.4974;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:7:0,3,4:0:0:3,4:116,158:-21.0748,-13.3824,-12.4793,-8.044,0,-6.83988 0|0:26:24,2,0:24:933:2,0:71,0:0,-1.92606,-78.3838,-7.22472,-78.9858,-83.9679 0|1:9:6,3,0:6:234:3,0:118,0:-6.27543,0,-18.7217,-8.08161,-19.6248,-27.3626 0|1:7:2,5,0:2:78:5,0:185,0:-12.3762,0,-5.29626,-12.9783,-6.80141,-19.4114 dDocent_Contig_11041 7 . T C 418.324 . AB=0.212963;ABP=80.2986;AC=3;AF=0.375;AN=8;AO=23;CIGAR=1X;DP=110;DPB=110;DPRA=18;EPP=52.9542;EPPR=191.928;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.827586;PAO=0;PQA=0;PQR=0;PRO=0;QA=874;QR=3300;RO=87;RPL=0;RPP=52.9542;RPPR=191.928;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=87;SRP=191.928;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:50:43,7:43:1628:7:271:-9.70481,0,-131.736 0/1:40:28,12:28:1061:12:449:-28.7103,0,-83.7559 0/1:18:14,4:14:533:4:154:-8.81492,0,-42.895 0/0:2:2,0:2:78:0:0:0,-0.60206,-7.40347 dDocent_Contig_11043 28 . G T 64.1804 . AB=0.138889;ABP=43.7857;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=132;DPB=132;DPRA=1.125;EPP=13.8677;EPPR=278.787;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=203;QR=5042;RO=127;RPL=0;RPP=13.8677;RPPR=278.787;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=127;SRP=278.787;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:31,5:31:1213:5:203:-7.81598,0,-98.6093 0/0:58:58,0:58:2315:0:0:0,-17.4597,-208.508 0/0:24:24,0:24:962:0:0:0,-7.22472,-86.8815 0/0:14:14,0:14:552:0:0:0,-4.21442,-50.023 dDocent_Contig_11044 10 . T G 281.847 . AB=0.5;ABP=3.0103;AC=1;AF=0.125;AN=8;AO=10;CIGAR=1X;DP=130;DPB=130;DPRA=0.545455;EPP=24.725;EPPR=263.587;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=0.966667;PAO=0;PQA=0;PQR=0;PRO=0;QA=395;QR=4818;RO=120;RPL=0;RPP=24.725;RPPR=263.587;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=120;SRP=263.587;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:47:47,0:47:1885:0:0:0,-14.1484,-169.841 0/0:51:51,0:51:2057:0:0:0,-15.3525,-185.304 0/0:12:12,0:12:474:0:0:0,-3.61236,-43.0077 0/1:20:10,10:10:402:10:395:-29.8837,0,-30.5182 dDocent_Contig_11045 107 . N A 991.295 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=33;CIGAR=1X;DP=33;DPB=33;DPRA=0;EPP=74.6689;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1081;QR=0;RO=0;RPL=0;RPP=74.6689;RPPR=0;RPR=33;RUN=1;SAF=0;SAP=74.6689;SAR=33;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:11:0,11:0:0:11:378:-34.3517,-3.31133,0 1/1:15:0,15:0:0:15:494:-44.7755,-4.51545,0 1/1:3:0,3:0:0:3:86:-8.02497,-0.90309,0 1/1:4:0,4:0:0:4:123:-11.375,-1.20412,0 dDocent_Contig_11046 14 . C T 46.5772 . AB=0.5;ABP=3.0103;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=33;DPB=33;DPRA=0.275862;EPP=7.35324;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=1237;RO=31;RPL=0;RPP=7.35324;RPPR=70.3259;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:14:14,0:14:552:0:0:0,-4.21442,-50.0188 0/0:15:15,0:15:603:0:0:0,-4.51545,-54.6085 0/1:4:2,2:2:82:2:81:-6.48161,0,-6.57556 ./.:.:.:.:.:.:.:. dDocent_Contig_11047 73 . G T 95.4906 . AB=0.352941;ABP=6.20364;AC=3;AF=0.375;AN=8;AO=7;CIGAR=1X;DP=29;DPB=29;DPRA=0;EPP=18.2106;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=246;QR=761;RO=22;RPL=7;RPP=18.2106;RPPR=50.7827;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:12:11,1:11:381:1:36:0,-0.0140849,-31.0211 0/1:8:6,2:6:212:2:70:-4.23909,0,-17.015 0/1:5:4,1:4:132:1:36:-2.09312,0,-10.7012 0/1:4:1,3:1:36:3:104:-8.49868,0,-2.39415 dDocent_Contig_11048 127 . G A 293.296 . AB=0.48;ABP=3.09716;AC=2;AF=0.25;AN=8;AO=12;CIGAR=1X1M2X1M1X2M1X1M1X;DP=71;DPB=71;DPRA=0.543478;EPP=29.068;EPPR=124.613;GTI=0;LEN=1;MEANALT=1.5;MQM=40.9167;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=462;QR=1913;RO=56;RPL=0;RPP=29.068;RPPR=124.613;RPR=12;RUN=1;SAF=0;SAP=29.068;SAR=12;SRF=0;SRP=124.613;SRR=56;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:28:27,0:27:922:0:0:0,-8.12781,-83.1653 0|0:18:17,0:17:576:0:0:0,-5.11751,-52.0299 0|1:11:4,6:4:140:6:232:-16.9136,0,-9.79275 0|1:14:8,6:8:275:6:230:-15.814,0,-20.8705 dDocent_Contig_11049 112 . C T 319.082 . AB=0.214286;ABP=42.7172;AC=4;AF=0.5;AN=8;AO=16;CIGAR=1X;DP=67;DPB=67;DPRA=2.85714;EPP=37.7539;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=568;QR=1755;RO=51;RPL=0;RPP=37.7539;RPPR=113.755;RPR=16;RUN=1;SAF=0;SAP=37.7539;SAR=16;SRF=0;SRP=113.755;SRR=51;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:27,4:27:926:4:142:-3.79728,0,-74.3216 0/1:25:17,8:17:589:8:284:-18.3778,0,-45.811 0/0:7:7,0:7:240:0:0:0,-2.10721,-21.9353 1/1:4:0,4:0:0:4:142:-13.1292,-1.20412,0 dDocent_Contig_11050 7 . T C 2343.58 . AB=0.583333;ABP=8.07707;AC=6;AF=0.75;AN=8;AO=76;CIGAR=1X;DP=111;DPB=111;DPRA=0;EPP=168.042;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.971429;PAO=0;PQA=0;PQR=0;PRO=0;QA=2908;QR=1316;RO=35;RPL=0;RPP=168.042;RPPR=79.0118;RPR=76;RUN=1;SAF=76;SAP=168.042;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:15,21:15:581:21:810:-62.3882,0,-41.7961 0/1:48:20,28:20:735:28:1064:-81.6148,0,-52.0211 1/1:22:0,22:0:0:22:840:-75.9201,-6.62266,0 1/1:5:0,5:0:0:5:194:-17.8328,-1.50515,0 dDocent_Contig_11051 7 . T A 1888.12 . AB=0.0816327;ABP=226.495;AC=0;AF=0;AN=8;AO=12;CIGAR=2X1M;DP=147;DPB=147;DPRA=0;EPP=29.068;EPPR=126.784;GTI=0;LEN=1;MEANALT=2.75;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=465;QR=2168;RO=57;RPL=0;RPP=29.068;RPPR=126.784;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:61:19,5,2,35:19:725:5,2,35:193,78,1360:-106.041,-95.9099,-153.882,-105.348,-148.976,-164.224,0,-43.6248,-53.0637,-48.94 0|0:46:27,8,6,5:27:1023:8,6,5:308,233,193:-17.1604,0,-81.458,-6.14142,-64.719,-88.2031,-9.43783,-68.015,-74.158,-91.7999 0|0:23:6,0,3,14:6:231:0,3,14:0,115,541:-42.6316,-44.4377,-63.4047,-34.9994,-53.9661,-53.063,0,-18.9683,-9.52992,-14.7539 0|0:17:5,1,1,10:5:189:1,1,10:38,39,388:-30.3774,-28.7667,-43.9542,-28.6764,-41.049,-43.8642,0,-12.3702,-12.2792,-12.4764 dDocent_Contig_11052 107 . N T 1222.9 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=42;CIGAR=1X;DP=42;DPB=42;DPRA=0;EPP=94.2121;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1337;QR=0;RO=0;RPL=0;RPP=94.2121;RPPR=0;RPR=42;RUN=1;SAF=0;SAP=94.2121;SAR=42;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:6:0,6:0:0:6:186:-17.0449,-1.80618,0 1/1:31:0,31:0:0:31:989:-89.3028,-9.33193,0 1/1:4:0,4:0:0:4:127:-11.7441,-1.20412,0 1/1:1:0,1:0:0:1:35:-3.49863,-0.30103,0 dDocent_Contig_11053 66 . T C 111.133 . AB=0.230769;ABP=19.3799;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=69;DPB=69;DPRA=1.81395;EPP=16.0391;EPPR=139.813;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.984127;PAO=0;PQA=0;PQR=0;PRO=0;QA=222;QR=2368;RO=63;RPL=6;RPP=16.0391;RPPR=139.813;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=63;SRP=139.813;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:20,6:20:766:6:222:-12.5113,0,-61.4384 0/0:18:18,0:18:655:0:0:0,-5.41854,-59.2719 0/0:17:17,0:17:646:0:0:0,-5.11751,-58.4747 0/0:8:8,0:8:301:0:0:0,-2.40824,-27.4452 dDocent_Contig_11054 116 . G A 225.352 . AB=0.0819672;ABP=95.6005;AC=0;AF=0;AN=8;AO=7;CIGAR=1X3M1X;DP=101;DPB=101;DPRA=10.8889;EPP=18.2106;EPPR=122.441;GTI=0;LEN=1;MEANALT=3;MQM=25.2857;MQMR=33.6909;NS=4;NUMALT=4;ODDS=6.93889e-18;PAIRED=0;PAIREDR=0.345455;PAO=0;PQA=0;PQR=0;PRO=0;QA=233;QR=1788;RO=55;RPL=0;RPP=18.2106;RPPR=122.441;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=122.441;SRR=55;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:37:27,0,2,2,6:27:889:0,2,2,6:0,67,68,166:0,-8.12781,-61.7068,-3.25919,-56.8642,-56.2621,-3.99485,-57.5921,-52.7492,-56.99,-3.76021,-57.2625,-52.4207,-53.1491,-55.4563 0|0:32:16,1,2,0,13:16:527:1,2,0,13:34,69,0,398:-20.7386,-24.6074,-57.7654,-20.6289,-53.145,-53.4942,-25.5551,-58.0664,-54.0962,-59.0178,0,-32.5197,-28.5446,-33.4681,-29.5547 0|0:29:9,6,3,0,11:9:296:6,3,0,11:203,97,0,332:-5.19027,-2.70167,-8.0218,-4.77518,-6.70392,-10.999,-7.89954,-9.82798,-11.9021,-15.025,0,-1.92308,-3.99488,-7.11881,-3.80748 0|0:3:3,0,0,0,0:3:76:0,0,0,0:0,0,0,0:0,-0.90309,-3.01725,-0.90309,-3.01725,-3.01725,-0.90309,-3.01725,-3.01725,-3.01725,-0.90309,-3.01725,-3.01725,-3.01725,-3.01725 dDocent_Contig_11056 10 . T C 89.1353 . AB=0.120482;ABP=106.849;AC=3;AF=0.375;AN=8;AO=10;CIGAR=1X;DP=108;DPB=108;DPRA=1.10667;EPP=24.725;EPPR=215.815;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=404;QR=3952;RO=98;RPL=0;RPP=24.725;RPPR=215.815;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=98;SRP=215.815;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:25:25,0:25:1014:0:0:0,-7.52575,-91.5516 0/1:35:31,4:31:1242:4:159:-4.15539,0,-101.515 0/1:37:34,3:34:1389:3:122:-0.234383,0,-114.119 0/1:11:8,3:8:307:3:123:-8.15346,0,-24.6717 dDocent_Contig_11057 26 . C T 131.08 . AB=0.26087;ABP=14.4341;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=169;DPB=169;DPRA=0.472603;EPP=16.0391;EPPR=356.96;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=234;QR=6455;RO=163;RPL=0;RPP=16.0391;RPPR=356.96;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=163;SRP=356.96;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:17,6:17:679:6:234:-14.5059,0,-54.5173 0/0:25:25,0:25:962:0:0:0,-7.52575,-86.8729 0/0:81:81,0:81:3251:0:0:0,-24.3834,-292.652 0/0:40:40,0:40:1563:0:0:0,-12.0412,-140.907 dDocent_Contig_11058 161 . G A 185.258 . AB=0.307692;ABP=11.3621;AC=2;AF=0.25;AN=8;AO=9;CIGAR=1X;DP=47;DPB=47;DPRA=4.88889;EPP=22.5536;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=363;QR=1497;RO=38;RPL=9;RPP=22.5536;RPPR=85.5263;RPR=0;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=85.5263;SRR=38;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:15,4:15:584:4:161:-9.15533,0,-47.1697 0/0:18:17,1:17:671:1:41:0,-1.32397,-56.6225 0/1:7:3,4:3:122:4:161:-12.7683,0,-9.26528 0/0:3:3,0:3:120:0:0:0,-0.90309,-11.1873 dDocent_Contig_11059 49 . T C 317.792 . AB=0.714286;ABP=5.80219;AC=2;AF=0.25;AN=8;AO=5;CIGAR=3M1X11M;DP=29;DPB=29.4667;DPRA=0.4375;EPP=13.8677;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=202;QR=665;RO=17;RPL=5;RPP=13.8677;RPPR=39.9253;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:14:7,7,0:7:273:7,0:268,0:-20.2673,0,-20.7222,-22.3745,-22.8295,-44.8179 0|1:4:1,0,3:1:36:0,3:0,120:-9.98357,-10.2846,-13.2121,0,-3.29724,-2.39415 0|1:3:1,0,2:1:40:0,2:0,82:-6.87659,-7.17762,-10.4694,0,-3.69465,-3.09259 0|0:8:8,0,0:8:316:0,0:0,0:0,-2.40824,-28.8062,-2.40824,-28.8062,-28.8062 dDocent_Contig_11060 7 . T C 38.3807 . AB=0.5;ABP=3.0103;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X;DP=46;DPB=46;DPRA=0.285714;EPP=7.35324;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=71;QR=1696;RO=44;RPL=0;RPP=7.35324;RPPR=98.5551;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:15:15,0:15:585:0:0:0,-4.51545,-52.9933 0/0:18:18,0:18:691:0:0:0,-5.41854,-62.5228 0/0:9:9,0:9:342:0:0:0,-2.70927,-31.1367 0/1:4:2,2:2:78:2:71:-5.53696,0,-6.19935 dDocent_Contig_11061 25 . G C 686.52 . AB=0.208092;ABP=131.052;AC=4;AF=0.5;AN=8;AO=36;CIGAR=1X;DP=173;DPB=173;DPRA=0;EPP=81.1833;EPPR=300.502;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=0.985401;PAO=0;PQA=0;PQR=0;PRO=0;QA=1408;QR=5392;RO=137;RPL=0;RPP=81.1833;RPPR=300.502;RPR=36;RUN=1;SAF=36;SAP=81.1833;SAR=0;SRF=137;SRP=300.502;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:41:35,6:35:1393:6:225:-8.26599,0,-113.286 0/1:56:47,9:47:1837:9:360:-15.9059,0,-148.677 0/1:54:40,14:40:1564:14:565:-34.9375,0,-124.739 0/1:22:15,7:15:598:7:258:-16.9406,0,-47.5334 dDocent_Contig_11062 8 . T C 2848.5 . AB=0.805085;ABP=98.4079;AC=4;AF=0.5;AN=8;AO=95;CIGAR=1X;DP=118;DPB=118;DPRA=0;EPP=209.3;EPPR=37.093;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.884211;PAIREDR=0.913043;PAO=0;PQA=0;PQR=0;PRO=0;QA=3616;QR=859;RO=23;RPL=0;RPP=209.3;RPPR=52.9542;RPR=95;RUN=1;SAF=95;SAP=209.3;SAR=0;SRF=21;SRP=37.093;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:41:10,31:10:380:31:1189:-94.9639,0,-22.2108 0/1:52:5,47:5:180:47:1806:-147.136,0,-0.896461 0/1:20:6,14:6:222:14:518:-40.9341,0,-14.3166 0/1:5:2,3:2:77:3:103:-8.10164,0,-5.80399 dDocent_Contig_11064 16 . T C 37.3325 . AB=0.116279;ABP=58.0041;AC=2;AF=0.25;AN=8;AO=5;CIGAR=1X;DP=59;DPB=59;DPRA=2.6875;EPP=13.8677;EPPR=120.27;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.981481;PAO=0;PQA=0;PQR=0;PRO=0;QA=204;QR=2176;RO=54;RPL=0;RPP=13.8677;RPPR=120.27;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:13:13,0:13:519:0:0:0,-3.91339,-47.0532 0/1:32:28,4:28:1133:4:163:-5.42547,0,-92.6171 0/1:11:10,1:10:406:1:41:-0.783237,0,-33.5891 0/0:3:3,0:3:118:0:0:0,-0.90309,-11.0022 dDocent_Contig_11065 48 . T C 54.5917 . AB=0.214286;ABP=12.937;AC=1;AF=0.25;AN=4;AO=3;CIGAR=1X;DP=19;DPB=19;DPRA=2.8;EPP=9.52472;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.8125;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=623;RO=16;RPL=0;RPP=9.52472;RPPR=37.7539;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 0/1:14:11,3:11:432:3:122:-7.15807,0,-35.0208 0/0:5:5,0:5:191:0:0:0,-1.50515,-17.5568 ./.:.:.:.:.:.:.:. dDocent_Contig_11067 27 . C T 187.6 . AB=0.141414;ABP=113.58;AC=2;AF=0.25;AN=8;AO=19;CIGAR=1X;DP=244;DPB=244;DPRA=0;EPP=44.2683;EPPR=491.592;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.995556;PAO=0;PQA=0;PQR=0;PRO=0;QA=771;QR=9023;RO=225;RPL=0;RPP=44.2683;RPPR=491.592;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=225;SRP=491.592;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:100:96,4:96:3832:4:164:0,-14.9531,-329.726 0/0:45:44,1:44:1768:1:38:0,-9.74908,-155.538 0/1:72:62,10:62:2496:10:405:-15.1359,0,-203.098 0/1:27:23,4:23:927:4:164:-7.02209,0,-75.607 dDocent_Contig_11068 146 . C T 326.552 . AB=0.565217;ABP=3.86001;AC=1;AF=0.25;AN=4;AO=13;CIGAR=1X;DP=33;DPB=33;DPRA=2.3;EPP=31.2394;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=455;QR=722;RO=20;RPL=0;RPP=31.2394;RPPR=46.4397;RPR=13;RUN=1;SAF=0;SAP=31.2394;SAR=13;SRF=0;SRP=46.4397;SRR=20;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 0/1:23:10,13:10:363:13:455:-34.3542,0,-26.0914 0/0:10:10,0:10:359:0:0:0,-3.0103,-32.6521 dDocent_Contig_11069 76 . C T 66.4768 . AB=0.15;ABP=45.5712;AC=2;AF=0.25;AN=8;AO=6;CIGAR=1M1I1X1M1X;DP=67;DPB=68.5;DPRA=1.48148;EPP=16.0391;EPPR=133.299;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.933333;PAO=0;PQA=0;PQR=0;PRO=0;QA=223;QR=2381;RO=60;RPL=6;RPP=16.0391;RPPR=133.299;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:11:10,0:10:394:0:0:0,-3.0103,-35.7085 0|0:16:16,0:16:631:0:0:0,-4.81648,-57.1258 0|1:22:18,4:18:724:4:162:-8.34409,0,-58.8645 0|1:18:16,2:16:632:2:61:-0.374994,0,-51.7988 dDocent_Contig_11071 11 . G A 270.333 . AB=0.366667;ABP=7.64277;AC=3;AF=0.5;AN=6;AO=11;CIGAR=1X;DP=30;DPB=30;DPRA=0;EPP=26.8965;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=446;QR=746;RO=19;RPL=0;RPP=26.8965;RPPR=44.2683;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:7:6,1:6:241:1:39:-1.78935,0,-19.958 0/1:14:7,7:7:276:7:284:-21.7196,0,-20.9906 0/1:9:6,3:6:229:3:123:-8.75552,0,-18.2619 ./.:.:.:.:.:.:.:. dDocent_Contig_11072 97 . A C 223.77 . AB=0.692308;ABP=7.18621;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X;DP=34;DPB=34;DPRA=1.85714;EPP=22.5536;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=304;QR=849;RO=25;RPL=9;RPP=22.5536;RPPR=57.2971;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:4,9:4:141:9:304:-23.7748,0,-9.12371 0/0:10:10,0:10:337:0:0:0,-3.0103,-30.6543 0/0:8:8,0:8:266:0:0:0,-2.40824,-24.2638 0/0:3:3,0:3:105:0:0:0,-0.90309,-9.79609 dDocent_Contig_11079 55 . T A 96.5563 . AB=0.333333;ABP=5.9056;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=43;DPB=43;DPRA=1.16129;EPP=11.6962;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.846154;PAO=0;PQA=0;PQR=0;PRO=0;QA=162;QR=1541;RO=39;RPL=4;RPP=11.6962;RPPR=87.6977;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:13:13,0:13:519:0:0:0,-3.91339,-47.0551 0/1:12:8,4:8:314:4:162:-11.3546,0,-25.0093 0/0:7:7,0:7:267:0:0:0,-2.10721,-24.3902 0/0:11:11,0:11:441:0:0:0,-3.31133,-40.0459 dDocent_Contig_11080 77 . G T 63.8513 . AB=0.15;ABP=45.5712;AC=2;AF=0.25;AN=8;AO=7;CIGAR=1X;DP=96;DPB=96;DPRA=1.8;EPP=18.2106;EPPR=196.271;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=273;QR=3287;RO=89;RPL=7;RPP=18.2106;RPPR=196.271;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=89;SRP=196.271;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:41:40,1:40:1467:1:39:0,-8.44566,-128.409 0/1:27:23,4:23:837:4:156:-6.28948,0,-67.5138 0/0:15:15,0:15:574:0:0:0,-4.51545,-52.0022 0/1:13:11,2:11:409:2:78:-3.49008,0,-33.2389 dDocent_Contig_11081 18 . C T 2336.86 . AB=0.512658;ABP=3.2302;AC=4;AF=0.5;AN=8;AO=81;CIGAR=1M1D2M1X;DP=158;DPB=141.8;DPRA=0;EPP=178.9;EPPR=170.214;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.91358;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3193;QR=3022;RO=77;RPL=0;RPP=178.9;RPPR=170.214;RPR=81;RUN=1;SAF=81;SAP=178.9;SAR=0;SRF=77;SRP=170.214;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:61:31,30:31:1208:30:1175:-87.6698,0,-90.6453 0|1:41:17,24:17:674:24:944:-72.9259,0,-48.6518 0|1:33:18,15:18:709:15:591:-43.5902,0,-54.2068 0|1:23:11,12:11:431:12:483:-36.8981,0,-32.2204 dDocent_Contig_11082 11 . G A 32.5984 . AB=0.142857;ABP=26.2761;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=54;DPB=54;DPRA=1.90909;EPP=9.52472;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.705882;PAO=0;PQA=0;PQR=0;PRO=0;QA=121;QR=2060;RO=51;RPL=0;RPP=9.52472;RPPR=113.755;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:16:16,0:16:653:0:0:0,-4.81648,-59.1024 0/1:21:18,3:18:718:3:121:-4.95857,0,-58.621 0/0:9:9,0:9:365:0:0:0,-2.70927,-33.2145 0/0:8:8,0:8:324:0:0:0,-2.40824,-29.5288 dDocent_Contig_11083 124 . C T 78.231 . AB=0.294118;ABP=9.26925;AC=1;AF=0.25;AN=4;AO=5;CIGAR=1X;DP=24;DPB=24;DPRA=2.42857;EPP=13.8677;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=40;MQMR=40;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=165;QR=673;RO=19;RPL=0;RPP=13.8677;RPPR=44.2683;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=44.2683;SRR=19;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:12,5:12:422:5:165:-9.52206,0,-31.8249 0/0:7:7,0:7:251:0:0:0,-2.10721,-22.0413 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_11084 12 . G T 288.487 . AB=0.0333333;ABP=59.7581;AC=0;AF=0;AN=8;AO=3;CIGAR=1X2M1X;DP=140;DPB=140;DPRA=0.891892;EPP=9.52472;EPPR=261.416;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=120;QR=4492;RO=119;RPL=0;RPP=9.52472;RPPR=261.416;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=119;SRP=261.416;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:36:34,2,0,0:34:1284:2,0,0:79,0,0:0,-3.33945,-108.348,-10.235,-108.95,-115.452,-10.235,-108.95,-115.452,-115.452 0|0:43:41,0,0,2:41:1560:0,0,2:0,0,75:0,-12.3422,-140.294,-12.3422,-140.294,-140.294,-5.8247,-134.151,-134.151,-133.549 0|0:31:26,0,2,2:26:990:0,2,2:0,76,75:0,-7.82678,-89.0787,-1.55567,-82.8456,-82.2435,-1.64817,-82.9351,-76.702,-82.3331 0|0:30:18,1,0,11:18:658:1,0,11:41,0,437:-30.5476,-32.581,-86.0243,-35.9662,-86.3254,-89.7105,0,-50.3357,-53.7221,-50.4108 dDocent_Contig_11085 65 . A G 41.8248 . AB=0.214286;ABP=12.937;AC=2;AF=0.25;AN=8;AO=3;CIGAR=1X;DP=40;DPB=40;DPRA=0.538462;EPP=9.52472;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=1398;RO=37;RPL=3;RPP=9.52472;RPPR=83.3548;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:1:1,0:1:39:0:0:0,-0.30103,-3.89656 0/0:25:25,0:25:952:0:0:0,-7.52575,-85.9814 0/1:4:3,1:3:101:1:41:-2.89045,0,-8.21665 0/1:10:8,2:8:306:2:81:-4.67543,0,-24.8829 dDocent_Contig_11087 131 . G T 97.2558 . AB=0.444444;ABP=3.25157;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=21;DPB=21;DPRA=1.5;EPP=11.6962;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=151;QR=643;RO=17;RPL=0;RPP=11.6962;RPPR=39.9253;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=39.9253;SRR=17;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:5,4:5:191:4:151:-11.2484,0,-14.8488 0/0:7:7,0:7:266:0:0:0,-2.10721,-24.3018 ./.:.:.:.:.:.:.:. 0/0:5:5,0:5:186:0:0:0,-1.50515,-17.099 dDocent_Contig_11088 48 . A T 61.6948 . AB=0.151515;ABP=37.8197;AC=3;AF=0.375;AN=8;AO=6;CIGAR=1X;DP=49;DPB=49;DPRA=0;EPP=8.80089;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.5;PAIREDR=0.581395;PAO=0;PQA=0;PQR=0;PRO=0;QA=239;QR=1720;RO=43;RPL=1;RPP=8.80089;RPPR=96.3836;RPR=5;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:12,3:12:475:3:123:-6.94934,0,-38.5844 0/1:13:12,1:12:488:1:41:-0.181177,0,-40.3581 0/1:5:4,1:4:162:1:41:-2.58942,0,-13.4616 0/0:16:15,1:15:595:1:34:0,-1.41757,-50.4842 dDocent_Contig_11089 10 . T G 1242.11 . AB=0.8125;ABP=16.582;AC=3;AF=0.375;AN=8;AO=36;CIGAR=1X;DP=64;DPB=64;DPRA=1.56;EPP=81.1833;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1442;QR=1122;RO=28;RPL=0;RPP=81.1833;RPPR=63.8115;RPR=36;RUN=1;SAF=36;SAP=81.1833;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:23:0,23:0:0:23:921:-83.192,-6.92369,0 0/0:18:18,0:18:724:0:0:0,-5.41854,-65.4844 0/1:16:3,13:3:123:13:521:-42.4173,0,-6.64831 0/0:7:7,0:7:275:0:0:0,-2.10721,-25.1149 dDocent_Contig_11091 11 . G A 205.546 . AB=0.206897;ABP=24.6501;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X3M1X;DP=40;DPB=40;DPRA=2.63636;EPP=16.0391;EPPR=57.2971;GTI=0;LEN=1;MEANALT=2;MQM=43;MQMR=55.92;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=239;QR=989;RO=25;RPL=0;RPP=16.0391;RPPR=57.2971;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:13:6,2,5:6:242:2,5:78,193:-14.0483,-9.70567,-29.0615,0,-13.8244,-18.4641 0|1:16:9,4,3:9:360:4,3:161,118:-9.90395,0,-28.4553,-2.9029,-19.9546,-31.6651 0|0:6:6,0,0:6:224:0,0:0,0:0,-1.80618,-19.8503,-1.80618,-19.8503,-19.8503 0|0:5:4,0,0:4:163:0,0:0,0:0,-1.20412,-14.6574,-1.20412,-14.6574,-14.6574 dDocent_Contig_11092 172 . T C 174.792 . AB=0.272727;ABP=7.94546;AC=3;AF=0.375;AN=8;AO=6;CIGAR=1X1M1X;DP=22;DPB=22;DPRA=1.75;EPP=16.0391;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=238;QR=641;RO=16;RPL=6;RPP=16.0391;RPPR=37.7539;RPR=0;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=37.7539;SRR=16;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:2:2,0:2:81:0:0:0,-0.60206,-7.68573 0|0:6:6,0:6:240:0:0:0,-1.80618,-21.9758 0|1:11:8,3:8:320:3:116:-7.50418,0,-25.8569 1|1:3:0,3:0:0:3:122:-11.3725,-0.90309,0 dDocent_Contig_11093 20 . C A 387.444 . AB=0.421053;ABP=4.03889;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X3M1X1M1X6M;DP=52;DPB=52;DPRA=2;EPP=20.3821;EPPR=61.6401;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=0.375;PAIREDR=0.740741;PAO=0;PQA=0;PQR=0;PRO=0;QA=312;QR=1083;RO=27;RPL=0;RPP=20.3821;RPPR=61.6401;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:13:10,0,0,2:10:403:0,0,2:0,0,40:0,-3.0103,-36.3557,-3.0103,-36.3557,-36.3557,-0.683408,-33.931,-33.931,-33.3289 0|0:14:4,6,0,2:4:161:6,0,2:238,0,32:-18.5062,0,-11.5645,-19.7103,-13.3707,-33.0038,-17.767,-11.4363,-31.0501,-30.448 0|1:19:7,0,8,3:7:276:0,8,3:0,312,66:-23.6359,-25.7431,-48.4689,0,-22.8013,-20.393,-21.5657,-44.2731,-18.6296,-43.37 0|0:6:6,0,0,0:6:243:0,0,0:0,0,0:0,-1.80618,-22.2482,-1.80618,-22.2482,-22.2482,-1.80618,-22.2482,-22.2482,-22.2482 dDocent_Contig_11094 46 . G A 89.564 . AB=0.181818;ABP=32.0291;AC=2;AF=0.25;AN=8;AO=6;CIGAR=1X;DP=91;DPB=91;DPRA=0.568966;EPP=16.0391;EPPR=187.585;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.929412;PAO=0;PQA=0;PQR=0;PRO=0;QA=239;QR=3380;RO=85;RPL=0;RPP=16.0391;RPPR=187.585;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=85;SRP=187.585;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:38:38,0:38:1504:0:0:0,-11.4391,-135.613 0/0:20:20,0:20:799:0:0:0,-6.0206,-72.2285 0/1:27:24,3:24:954:3:122:-3.24468,0,-78.0378 0/1:6:3,3:3:123:3:117:-9.10352,0,-9.65861 dDocent_Contig_11095 17 . T A 250.686 . AB=0.5;ABP=3.0103;AC=3;AF=0.375;AN=8;AO=8;CIGAR=1X;DP=33;DPB=33;DPRA=0.65;EPP=20.3821;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=319;QR=1018;RO=25;RPL=0;RPP=20.3821;RPPR=57.2971;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:121:-11.2802,-0.90309,0 0/0:13:13,0:13:531:0:0:0,-3.91339,-48.1364 0/1:10:5,5:5:201:5:198:-15.1862,0,-15.4602 0/0:7:7,0:7:286:0:0:0,-2.10721,-26.1148 dDocent_Contig_11096 7 . T C 442.222 . AB=0.391304;ABP=5.3706;AC=4;AF=0.5;AN=8;AO=21;CIGAR=1X;DP=56;DPB=56;DPRA=0;EPP=48.6112;EPPR=68.4099;GTI=0;LEN=1;MEANALT=1.25;MQM=34.381;MQMR=58.3824;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=0;PAIREDR=0.411765;PAO=0;PQA=0;PQR=0;PRO=0;QA=808;QR=1299;RO=34;RPL=0;RPP=48.6112;RPPR=76.8404;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=33;SRP=68.4099;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:3:2,1:2:76:1:39:-2.97996,0,-6.31158 0/0:23:20,2:20:771:2:76:0,-1.92004,-64.6262 0/1:20:12,8:12:452:8:307:-15.9863,0,-33.9438 1/1:10:0,10:0:0:10:386:-28.6426,-3.0103,0 dDocent_Contig_11097 40 . C G 318.242 . AB=0.214286;ABP=62.5707;AC=4;AF=0.5;AN=8;AO=18;CIGAR=1X2M1X;DP=84;DPB=84;DPRA=0;EPP=42.0968;EPPR=146.327;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=696;QR=2573;RO=66;RPL=0;RPP=42.0968;RPPR=146.327;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=66;SRP=146.327;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:15:13,2:13:508:2:80:-3.07634,0,-41.5522 0|1:28:24,4:24:938:4:149:-5.34327,0,-76.3012 0|1:22:12,10:12:467:10:389:-28.7449,0,-35.7545 0|1:19:17,2:17:660:2:78:-1.68373,0,-54.009 dDocent_Contig_11098 131 . T C 273.6 . AB=0.25;ABP=16.0391;AC=3;AF=0.375;AN=8;AO=11;CIGAR=1X3M1X;DP=38;DPB=38;DPRA=0;EPP=26.8965;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=388;QR=727;RO=21;RPL=0;RPP=26.8965;RPPR=48.6112;RPR=11;RUN=1;SAF=0;SAP=26.8965;SAR=11;SRF=0;SRP=48.6112;SRR=21;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:9:8,0,1:8:277:0,1:0,35:-0.789359,-3.1976,-25.7069,0,-22.8588,-22.5577 1|1:5:0,5,0:0:0:5,0:172,0:-15.8179,-1.50515,0,-15.8179,-1.50515,-15.8179 0|0:17:7,5,5:7:242:5,5:180,183:-12.8516,-0.274686,-18.4225,0,-4.96344,-18.1513 0|1:7:6,1,0:6:208:1,0:36,0:-1.49107,0,-16.9524,-3.29724,-17.2535,-20.1928 dDocent_Contig_11100 21 . C A 119.664 . AB=0.16129;ABP=64.7922;AC=3;AF=0.375;AN=8;AO=10;CIGAR=1X;DP=71;DPB=71;DPRA=2.2963;EPP=24.725;EPPR=135.47;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.9344;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=387;QR=2384;RO=61;RPL=0;RPP=24.725;RPPR=135.47;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=61;SRP=135.47;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:18,3:18:723:3:118:-4.68126,0,-59.0677 0/0:9:9,0:9:357:0:0:0,-2.70927,-32.4931 0/1:27:24,3:24:932:3:110:-2.13163,0,-76.0522 0/1:14:10,4:10:372:4:159:-10.4777,0,-29.6069 dDocent_Contig_11101 15 . A G 379.591 . AB=0.428571;ABP=4.56135;AC=4;AF=0.5;AN=8;AO=15;CIGAR=1X;DP=35;DPB=35;DPRA=0;EPP=35.5824;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=58.4667;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=609;QR=802;RO=20;RPL=0;RPP=35.5824;RPPR=46.4397;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:4:1,3:1:41:3:123:-10.2607,0,-2.89045 0/1:9:7,2:7:277:2:82:-5.07041,0,-22.5881 0/1:14:6,8:6:238:8:322:-24.6406,0,-17.5795 0/1:8:6,2:6:246:2:82:-5.37144,0,-20.1119 dDocent_Contig_11102 7 . T G 37225.4 . AB=0;ABP=0;AC=4;AF=0.666667;AN=6;AO=1305;CIGAR=1X;DP=1343;DPB=1343;DPRA=671;EPP=2836.78;EPPR=74.6689;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.696552;PAIREDR=0.545455;PAO=0;PQA=0;PQR=0;PRO=0;QA=41862;QR=526;RO=33;RPL=0;RPP=2836.78;RPPR=74.6689;RPR=1305;RUN=1;SAF=1305;SAP=2836.78;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:996:22,970:22:356:970:31383:-2791.12,-266.613,0 0/0:1:1,0:1:38:0:0:0,-0.30103,-3.79727 1/1:346:10,335:10:132:335:10479:-930.934,-92.0645,0 ./.:.:.:.:.:.:.:. dDocent_Contig_11105 58 . T C 51.3497 . AB=0.2;ABP=18.6449;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1X;DP=30;DPB=30;DPRA=1;EPP=11.6962;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=154;QR=988;RO=26;RPL=4;RPP=11.6962;RPPR=59.4686;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:10:10,0:10:370:0:0:0,-3.0103,-33.6388 0/1:15:13,2:13:503:2:72:-2.31887,0,-41.0894 0/1:5:3,2:3:115:2:82:-6.27453,0,-9.21806 ./.:.:.:.:.:.:.:. dDocent_Contig_11106 7 . T A 124.656 . AB=0.151163;ABP=93.9091;AC=3;AF=0.375;AN=8;AO=15;CIGAR=2X;DP=126;DPB=126;DPRA=0;EPP=35.5824;EPPR=239.701;GTI=0;LEN=1;MEANALT=1.5;MQM=49.2;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=0.6;PAIREDR=0.733945;PAO=0;PQA=0;PQR=0;PRO=0;QA=560;QR=4188;RO=109;RPL=0;RPP=35.5824;RPPR=239.701;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=109;SRP=239.701;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:40:38,2:38:1471:2:75:0,-6.03116,-126.655 0|1:25:22,3:22:835:3:105:-1.04043,0,-67.947 0|1:33:28,4:28:1080:4:150:-3.27883,0,-87.4835 0|1:28:21,6:21:802:6:230:-12.5674,0,-64.0073 dDocent_Contig_11108 173 . T G 961.776 . AB=0.304688;ABP=45.4219;AC=4;AF=0.5;AN=8;AO=39;CIGAR=1X;DP=128;DPB=128;DPRA=0;EPP=87.6977;EPPR=196.271;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1563;QR=3555;RO=89;RPL=39;RPP=87.6977;RPPR=196.271;RPR=0;RUN=1;SAF=0;SAP=87.6977;SAR=39;SRF=0;SRP=196.271;SRR=89;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:51:29,22:29:1165:22:886:-64.6937,0,-89.7743 0/1:40:32,8:32:1264:8:314:-16.5815,0,-101.994 0/1:26:21,5:21:843:5:199:-10.4618,0,-68.3553 0/1:11:7,4:7:283:4:164:-11.8386,0,-22.532 dDocent_Contig_11109 26 . A T 1242.66 . AB=0.672131;ABP=18.709;AC=4;AF=0.5;AN=8;AO=41;CIGAR=1X;DP=61;DPB=61;DPRA=0;EPP=92.0407;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1642;QR=770;RO=19;RPL=0;RPP=92.0407;RPPR=44.2683;RPR=41;RUN=1;SAF=41;SAP=92.0407;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:7,10:7:280:10:404:-31.602,0,-20.4531 0/1:25:8,16:8:328:16:644:-50.6596,0,-22.2562 0/1:10:1,9:1:41:9:352:-29.0254,0,-1.08427 0/1:9:3,6:3:121:6:242:-19.4481,0,-8.57072 dDocent_Contig_11110 52 . A G 79.113 . AB=0;ABP=0;AC=2;AF=0.25;AN=8;AO=2;CIGAR=1X;DP=33;DPB=33;DPRA=0.193548;EPP=7.35324;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.83871;PAO=0;PQA=0;PQR=0;PRO=0;QA=77;QR=1157;RO=31;RPL=2;RPP=7.35324;RPPR=70.3259;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:77:-7.30883,-0.60206,0 0/0:18:18,0:18:667:0:0:0,-5.41854,-60.3589 0/0:10:10,0:10:384:0:0:0,-3.0103,-34.9157 0/0:3:3,0:3:106:0:0:0,-0.90309,-9.8877 dDocent_Contig_11111 9 . T C 304.297 . AB=0.375;ABP=4.09604;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X1M1X5M;DP=29;DPB=29;DPRA=8;EPP=9.52472;EPPR=29.068;GTI=0;LEN=1;MEANALT=3;MQM=31;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=93;QR=466;RO=12;RPL=0;RPP=9.52472;RPPR=29.068;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=12;SRP=29.068;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:8:0,3,3,2:0:0:3,3,2:93,118,82:-13.4899,-6.8422,-5.93911,-8.37585,-1.79898,-7.47276,-6.68238,0,-1.55587,-6.08032 0|0:13:6,0,7,0:6:235:0,7,0:0,281,0:-16.4482,-18.2544,-37.6113,0,-19.7144,-17.6072,-18.2544,-37.6113,-19.7144,-37.6113 0|0:7:6,0,1,0:6:231:0,1,0:0,40,0:-1.79548,-3.60166,-22.5622,0,-19.35,-19.049,-3.60166,-22.5622,-19.35,-22.5622 0|0:1:0,0,1,0:0:0:0,1,0:0,39,0:-3.821,-3.821,-3.821,-0.30103,-0.30103,0,-3.821,-3.821,-0.30103,-3.821 dDocent_Contig_11112 28 . G A 43.5246 . AB=0.333333;ABP=4.45795;AC=0;AF=0;AN=8;AO=2;CIGAR=1M1D14M1X;DP=46;DPB=46.1176;DPRA=0.631579;EPP=7.35324;EPPR=83.3548;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=57;QR=1409;RO=37;RPL=0;RPP=7.35324;RPPR=83.3548;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:10:9,0,0:9:344:0,0:0,0:0,-2.70927,-30.9093,-2.70927,-30.9093,-30.9093 0|0:21:18,0,2:18:684:0,2:0,74:-0.607218,-6.02576,-62.1132,0,-56.0621,-55.46 0|0:9:8,0,0:8:303:0,0:0,0:0,-2.40824,-27.2193,-2.40824,-27.2193,-27.2193 0|0:6:2,2,2:2:78:2,2:57,80:-6.04519,-2.17719,-7.98194,0,-1.98909,-5.86204 dDocent_Contig_11113 21 . T C 528.674 . AB=0.146245;ABP=278.015;AC=3;AF=0.375;AN=8;AO=38;CIGAR=1X;DP=319;DPB=319;DPRA=0;EPP=85.5263;EPPR=613.194;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.921053;PAIREDR=0.572954;PAO=0;PQA=0;PQR=0;PRO=0;QA=1522;QR=11171;RO=281;RPL=0;RPP=85.5263;RPPR=613.194;RPR=38;RUN=1;SAF=38;SAP=85.5263;SAR=0;SRF=281;SRP=613.194;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:134:112,22:112:4466:22:887:-39.8007,0,-361.548 0/1:101:91,10:91:3583:10:393:-5.32171,0,-292.103 0/0:66:65,1:65:2604:1:40:0,-15.8723,-230.495 0/1:18:13,5:13:518:5:202:-13.143,0,-41.5459 dDocent_Contig_11114 38 . T G 116.267 . AB=0.263158;ABP=12.2676;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=38;DPB=38;DPRA=3;EPP=13.8677;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=204;QR=1314;RO=33;RPL=0;RPP=13.8677;RPPR=74.6689;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:14,5:14:559:5:204:-13.0245,0,-44.9334 0/0:12:12,0:12:481:0:0:0,-3.61236,-43.6388 0/0:4:4,0:4:153:0:0:0,-1.20412,-14.137 0/0:3:3,0:3:121:0:0:0,-0.90309,-11.2802 dDocent_Contig_11115 139 . T A 33.7645 . AB=0.142857;ABP=26.2761;AC=4;AF=0.5;AN=8;AO=4;CIGAR=1X;DP=35;DPB=35;DPRA=0.564103;EPP=11.6962;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=42.75;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.967742;PAO=0;PQA=0;PQR=0;PRO=0;QA=133;QR=1110;RO=31;RPL=0;RPP=11.6962;RPPR=70.3259;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=70.3259;SRR=31;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:13:13,0:13:466:0:0:0,-3.91339,-42.2758 0/1:14:12,2:12:434:2:53:-0.818956,0,-35.1854 0/1:7:6,1:6:210:1:39:-0.928945,0,-17.1344 1/1:1:0,1:0:0:1:41:-3.05864,-0.30103,0 dDocent_Contig_11116 16 . C T 437.648 . AB=0.298701;ABP=30.1114;AC=4;AF=0.5;AN=8;AO=23;CIGAR=1X;DP=77;DPB=77;DPRA=0;EPP=52.9542;EPPR=120.27;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=811;QR=2123;RO=54;RPL=0;RPP=52.9542;RPPR=120.27;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:21,8:21:816:8:287:-17.4437,0,-65.0195 0/1:25:18,7:18:713:7:248:-15.1349,0,-56.9695 0/1:15:10,5:10:393:5:181:-12.1275,0,-31.2088 0/1:8:5,3:5:201:3:95:-6.45657,0,-16.0629 dDocent_Contig_11118 14 . T C 349.86 . AB=0.325581;ABP=14.3727;AC=2;AF=0.25;AN=8;AO=15;CIGAR=1X;DP=66;DPB=66;DPRA=2.41667;EPP=35.5824;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=603;QR=2029;RO=51;RPL=0;RPP=35.5824;RPPR=113.755;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:34:23,11:23:901:11:439:-29.628,0,-71.1573 0/0:15:14,1:14:564:1:41:0,-0.420883,-47.0077 0/0:8:8,0:8:319:0:0:0,-2.40824,-29.0766 0/1:9:6,3:6:245:3:123:-8.75552,0,-19.7202 dDocent_Contig_11120 46 . G T 82.6717 . AB=0.1;ABP=16.9077;AC=3;AF=0.5;AN=6;AO=3;CIGAR=1X;DP=18;DPB=18;DPRA=1;EPP=9.52472;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1;MQM=54.6667;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.666667;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=589;RO=15;RPL=3;RPP=9.52472;RPPR=35.5824;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=15;SRP=35.5824;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:82:-7.77968,-0.60206,0 0/1:10:9,1:9:349:1:40:-0.844172,0,-28.7522 0/0:6:6,0:6:240:0:0:0,-1.80618,-21.9751 ./.:.:.:.:.:.:.:. dDocent_Contig_11122 161 . G C 165.773 . AB=0.347826;ABP=7.63648;AC=3;AF=0.5;AN=6;AO=8;CIGAR=1X;DP=23;DPB=23;DPRA=0;EPP=20.3821;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=310;QR=601;RO=15;RPL=8;RPP=20.3821;RPPR=35.5824;RPR=0;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=35.5824;SRR=15;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:8,3:8:318:3:115:-7.41245,0,-25.6727 0/1:8:5,3:5:202:3:123:-9.05655,0,-16.1536 0/1:4:2,2:2:81:2:72:-5.63112,0,-6.48161 ./.:.:.:.:.:.:.:. dDocent_Contig_11124 203 . C G 98.7636 . AB=0.571429;ABP=3.32051;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=33;DPB=33;DPRA=0.807692;EPP=11.6962;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=148;QR=1054;RO=29;RPL=4;RPP=11.6962;RPPR=65.983;RPR=0;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=65.983;SRR=29;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:17:17,0:17:628:0:0:0,-5.11751,-56.8559 0/1:7:3,4:3:95:4:148:-11.5748,0,-6.75535 0/0:8:8,0:8:294:0:0:0,-2.40824,-26.8124 0/0:1:1,0:1:37:0:0:0,-0.30103,-3.69783 dDocent_Contig_11125 15 . T C 191.432 . AB=0.307692;ABP=11.3621;AC=2;AF=0.25;AN=8;AO=8;CIGAR=1X;DP=47;DPB=47;DPRA=1.2381;EPP=20.3821;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.974359;PAO=0;PQA=0;PQR=0;PRO=0;QA=325;QR=1584;RO=39;RPL=0;RPP=20.3821;RPPR=87.6977;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:19:19,0:19:773:0:0:0,-5.71957,-69.8889 0/0:2:2,0:2:78:0:0:0,-0.60206,-7.40278 0/1:9:8,1:8:328:1:41:-1.3853,0,-27.1811 0/1:17:10,7:10:405:7:284:-20.8163,0,-31.6923 dDocent_Contig_11126 72 . G A 31.4192 . AB=0.333333;ABP=4.45795;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X;DP=100;DPB=100;DPRA=0.191489;EPP=7.35324;EPPR=215.815;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.989796;PAO=0;PQA=0;PQR=0;PRO=0;QA=70;QR=3700;RO=98;RPL=2;RPP=7.35324;RPPR=215.815;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=98;SRP=215.815;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:43:43,0:43:1585:0:0:0,-12.9443,-142.909 0/0:28:28,0:28:1091:0:0:0,-8.42884,-98.4862 0/0:23:23,0:23:867:0:0:0,-6.92369,-78.3427 0/1:6:4,2:4:157:2:70:-4.84057,0,-12.7026 dDocent_Contig_11127 30 . T A 324.842 . AB=0.0697674;ABP=141.278;AC=0;AF=0;AN=8;AO=6;CIGAR=1M6I3M1X3M6D1X1M;DP=95;DPB=92.5;DPRA=0;EPP=8.80089;EPPR=150.67;GTI=0;LEN=1;MEANALT=2.33333;MQM=13.6667;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0.941176;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=2696;RO=68;RPL=0;RPP=16.0391;RPPR=150.67;RPR=6;RUN=1;SAF=5;SAP=8.80089;SAR=1;SRF=68;SRP=150.67;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:31:24,5,1:24:946:5,1:195,14:-8.88046,0,-76.4489,-15.4495,-77.269,-92.9801 0|0:44:35,5,4:35:1394:5,4:196,54:-5.73595,0,-113.548,-13.7892,-112.473,-127.382 0|0:9:4,5,0:4:159:5,0:154,0:-11.446,0,-11.9831,-12.6501,-13.4882,-25.7809 0|0:11:5,5,1:5:197:5,1:185,14:-13.8198,0,-14.9379,-14.6721,-15.7943,-30.5906 dDocent_Contig_11130 73 . A G 92.6518 . AB=0.217391;ABP=18.9659;AC=4;AF=0.5;AN=8;AO=7;CIGAR=1X;DP=35;DPB=35;DPRA=0;EPP=18.2106;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.9643;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=207;QR=842;RO=28;RPL=7;RPP=18.2106;RPPR=63.8115;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:10,1:10:319:1:20:0,-1.31137,-27.0226 0/1:10:9,1:9:279:1:32:-0.189013,0,-22.4047 0/1:13:9,4:9:244:4:123:-7.46147,0,-18.3139 1/1:1:0,1:0:0:1:32:-3.19931,-0.30103,0 dDocent_Contig_11131 32 . G T 301.711 . AB=0.666667;ABP=6.62942;AC=1;AF=0.125;AN=8;AO=10;CIGAR=1X;DP=33;DPB=33;DPRA=2.5;EPP=24.725;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=397;QR=916;RO=23;RPL=0;RPP=24.725;RPPR=52.9542;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:5,10:5:202:10:397:-31.5687,0,-14.0466 0/0:4:4,0:4:158:0:0:0,-1.20412,-14.5987 0/0:12:12,0:12:474:0:0:0,-3.61236,-43.0092 0/0:2:2,0:2:82:0:0:0,-0.60206,-7.77968 dDocent_Contig_11132 13 . T A 1163.17 . AB=0.175439;ABP=55.1637;AC=1;AF=0.125;AN=8;AO=10;CIGAR=2X;DP=92;DPB=92;DPRA=0;EPP=24.725;EPPR=100.727;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.977778;PAO=0;PQA=0;PQR=0;PRO=0;QA=381;QR=1747;RO=45;RPL=0;RPP=24.725;RPPR=100.727;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:25:16,7,2:16:627:7,2:259,81:-16.34,0,-49.4393,-14.4696,-44.8659,-65.4407 0|0:32:9,3,20:9:333:3,20:122,806:-63.7213,-56.3669,-82.6923,0,-17.139,-21.1907 0|0:28:18,0,10:18:707:0,10:0,399:-27.8391,-33.2576,-91.4024,0,-58.5411,-55.5308 0|0:7:2,0,5:2:80:0,5:0,195:-15.814,-16.4161,-23.0091,0,-6.98973,-5.48458 dDocent_Contig_11133 18 . T C 310.866 . AB=0.833333;ABP=14.5915;AC=1;AF=0.125;AN=8;AO=10;CIGAR=1X;DP=46;DPB=46;DPRA=1.05882;EPP=24.725;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=397;QR=1272;RO=35;RPL=0;RPP=24.725;RPPR=79.0118;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:2,10:2:70:10:397:-32.4746,0,-3.03497 0/0:19:19,0:19:677:0:0:0,-5.71957,-61.2436 0/0:9:8,0:8:295:0:0:0,-2.40824,-26.7711 0/0:6:6,0:6:230:0:0:0,-1.80618,-21.0668 dDocent_Contig_11135 9 . T C 324.968 . AB=0.253968;ABP=36.1339;AC=3;AF=0.375;AN=8;AO=16;CIGAR=1X;DP=77;DPB=77;DPRA=1.5;EPP=37.7539;EPPR=135.47;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=619;QR=2348;RO=61;RPL=0;RPP=37.7539;RPPR=135.47;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=61;SRP=135.47;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:14:14,0:14:540:0:0:0,-4.21442,-48.9451 0/1:28:25,3:25:970:3:116:-2.38886,0,-79.1844 0/1:30:19,11:19:741:11:427:-29.7541,0,-57.9877 0/1:5:3,2:3:97:2:76:-5.70952,0,-7.54174 dDocent_Contig_11136 64 . T A 70.3422 . AB=0.5;ABP=3.0103;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=86;DPB=86;DPRA=3.52632;EPP=13.8677;EPPR=178.9;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=160;QR=3045;RO=81;RPL=5;RPP=13.8677;RPPR=178.9;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=81;SRP=178.9;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:61:59,2:59:2219:2:47:0,-13.9011,-195.47 0/0:15:15,0:15:563:0:0:0,-4.51545,-51.0023 0/1:6:3,3:3:113:3:113:-8.73312,0,-8.73312 0/0:4:4,0:4:150:0:0:0,-1.20412,-13.8655 dDocent_Contig_11137 17 . G A 651.724 . AB=0.367647;ABP=13.3567;AC=4;AF=0.5;AN=8;AO=25;CIGAR=1X;DP=68;DPB=68;DPRA=0;EPP=57.2971;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.930233;PAO=0;PQA=0;PQR=0;PRO=0;QA=1017;QR=1666;RO=43;RPL=0;RPP=57.2971;RPPR=96.3836;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:11,3:11:415:3:121:-7.06557,0,-33.47 0/1:25:16,9:16:625:9:365:-25.6887,0,-49.0475 0/1:11:9,2:9:359:2:82:-4.46835,0,-29.3616 0/1:18:7,11:7:267:11:449:-35.3473,0,-18.9672 dDocent_Contig_11138 158 . T A 115.011 . AB=0.181818;ABP=41.702;AC=2;AF=0.25;AN=8;AO=9;CIGAR=1X;DP=73;DPB=73;DPRA=2.70833;EPP=22.5536;EPPR=133.434;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.484375;PAO=0;PQA=0;PQR=0;PRO=0;QA=345;QR=2205;RO=64;RPL=9;RPP=22.5536;RPPR=133.434;RPR=0;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=141.985;SRR=64;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:21:20,1:20:663:1:41:0,-2.22706,-55.8757 0/1:39:32,7:32:1122:7:266:-12.5548,0,-89.5383 0/1:5:4,1:4:140:1:38:-2.29212,0,-11.4379 0/0:8:8,0:8:280:0:0:0,-2.40824,-25.5375 dDocent_Contig_11140 10 . T C 532.707 . AB=0.328571;ABP=20.8784;AC=4;AF=0.5;AN=8;AO=23;CIGAR=1X;DP=70;DPB=70;DPRA=0;EPP=30.2953;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=58.4783;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=893;QR=1880;RO=47;RPL=0;RPP=52.9542;RPPR=105.07;RPR=23;RUN=1;SAF=20;SAP=30.2953;SAR=3;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:32:22,10:22:872:10:389:-25.5973,0,-69.1554 0/1:24:15,9:15:606:9:343:-23.997,0,-47.6539 0/1:12:9,3:9:361:3:120:-7.57495,0,-29.2404 0/1:2:1,1:1:41:1:41:-3.49251,0,-3.49251 dDocent_Contig_11142 29 . A G 50.5419 . AB=0.147059;ABP=39.7976;AC=2;AF=0.25;AN=8;AO=5;CIGAR=1X;DP=60;DPB=60;DPRA=1.30769;EPP=13.8677;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=199;QR=2198;RO=55;RPL=0;RPP=13.8677;RPPR=122.441;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:18,3:18:725:3:121:-4.95857,0,-59.2545 0/0:25:25,0:25:998:0:0:0,-7.52575,-90.12 0/1:13:11,2:11:435:2:78:-3.48939,0,-35.589 0/0:1:1,0:1:40:0:0:0,-0.30103,-3.99568 dDocent_Contig_11143 150 . C A 855.536 . AB=0.54717;ABP=4.03458;AC=1;AF=0.166667;AN=6;AO=29;CIGAR=1X;DP=90;DPB=90;DPRA=2.86486;EPP=65.983;EPPR=135.47;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1145;QR=2439;RO=61;RPL=0;RPP=65.983;RPPR=135.47;RPR=29;RUN=1;SAF=0;SAP=65.983;SAR=29;SRF=0;SRP=135.47;SRR=61;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:35:35,0:35:1405:0:0:0,-10.536,-126.704 0/1:53:24,29:24:955:29:1145:-87.3772,0,-70.2948 0/0:2:2,0:2:79:0:0:0,-0.60206,-7.49763 ./.:.:.:.:.:.:.:. dDocent_Contig_11145 12 . T C 1779.86 . AB=0.588235;ABP=9.90792;AC=4;AF=0.5;AN=8;AO=60;CIGAR=1X;DP=102;DPB=102;DPRA=0;EPP=133.299;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2386;QR=1684;RO=42;RPL=0;RPP=133.299;RPPR=94.2121;RPR=60;RUN=1;SAF=60;SAP=133.299;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:37:21,16:21:844:16:649:-47.6052,0,-65.1361 0/1:27:4,23:4:149:23:909:-73.9888,0,-5.64344 0/1:20:10,10:10:406:10:405:-30.7898,0,-30.88 0/1:18:7,11:7:285:11:423:-33.0002,0,-20.6059 dDocent_Contig_11146 155 . A G 101.809 . AB=0.24;ABP=17.6895;AC=3;AF=0.375;AN=8;AO=6;CIGAR=1X12M;DP=31;DPB=31;DPRA=1.38889;EPP=16.0391;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.9;PAO=0;PQA=0;PQR=0;PRO=0;QA=232;QR=777;RO=20;RPL=6;RPP=16.0391;RPPR=46.4397;RPR=0;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=46.4397;SRR=20;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:6:6,0,0:6:229:0,0:0,0:0,-1.80618,-20.9736,-1.80618,-20.9736,-20.9736 0|1:8:3,2,3:3:114:2,3:74,114:-8.62545,-8.81142,-17.5581,0,-8.81142,-8.62545 0|1:12:7,3,2:7:276:3,2:113,79:-4.51961,-5.55977,-27.3647,0,-21.7667,-22.3263 0|1:5:4,0,1:4:158:0,1:0,39:-2.39141,-3.59553,-16.6013,0,-13.3964,-13.0953 dDocent_Contig_11147 82 . A T 475.42 . AB=0.205882;ABP=28.557;AC=5;AF=0.625;AN=8;AO=19;CIGAR=1X;DP=46;DPB=46;DPRA=0;EPP=44.2683;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=686;QR=926;RO=27;RPL=19;RPP=44.2683;RPPR=61.6401;RPR=0;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:18,3:18:618:3:104:-3.38089,0,-49.6216 1/1:12:0,12:0:0:12:435:-39.4919,-3.61236,0 0/1:11:8,3:8:273:3:111:-7.04259,0,-21.5916 0/1:2:1,1:1:35:1:36:-2.99621,0,-2.89657 dDocent_Contig_11148 170 . T A 137.942 . AB=0.375;ABP=5.18177;AC=2;AF=0.25;AN=8;AO=6;CIGAR=1X;DP=29;DPB=29;DPRA=1.23077;EPP=16.0391;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=236;QR=916;RO=23;RPL=6;RPP=16.0391;RPPR=52.9542;RPR=0;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=52.9542;SRR=23;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:10:10,0:10:395:0:0:0,-3.0103,-35.9078 0/0:3:3,0:3:123:0:0:0,-0.90309,-11.4648 0/1:13:8,5:8:322:5:198:-14.2842,0,-25.435 0/1:3:2,1:2:76:1:38:-2.89418,0,-6.31045 dDocent_Contig_11149 13 . T C 343.779 . AB=0.529412;ABP=3.13803;AC=3;AF=0.375;AN=8;AO=12;CIGAR=1X;DP=42;DPB=42;DPRA=1.66667;EPP=29.068;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=487;QR=1165;RO=30;RPL=0;RPP=29.068;RPPR=68.1545;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:7:7,0:7:271:0:0:0,-2.10721,-24.7539 0/0:16:15,1:15:581:1:41:0,-0.721913,-48.5367 0/1:17:8,9:8:313:9:367:-28.2777,0,-23.4159 1/1:2:0,2:0:0:2:79:-7.49763,-0.60206,0 dDocent_Contig_11150 7 . T C 48.2953 . AB=0.190476;ABP=20.4855;AC=2;AF=0.25;AN=8;AO=4;CIGAR=1X;DP=37;DPB=37;DPRA=1.3125;EPP=11.6962;EPPR=32.0291;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.606061;PAO=0;PQA=0;PQR=0;PRO=0;QA=153;QR=1245;RO=33;RPL=0;RPP=11.6962;RPPR=74.6689;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=27;SRP=32.0291;SRR=6;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:14,3:14:535:3:116:-5.70019,0,-43.3763 0/1:4:3,1:3:116:1:37:-2.49371,0,-9.61358 0/0:11:11,0:11:408:0:0:0,-3.31133,-37.067 0/0:5:5,0:5:186:0:0:0,-1.50515,-17.1006 dDocent_Contig_11152 22 . T C 48.7674 . AB=0.5;ABP=3.0103;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X;DP=33;DPB=33;DPRA=0.413793;EPP=7.35324;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=4.33681e-19;PAIRED=0;PAIREDR=0.967742;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=1169;RO=31;RPL=0;RPP=7.35324;RPPR=70.3259;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:9:9,0:9:338:0:0:0,-2.70927,-30.77 0/0:17:17,0:17:636:0:0:0,-5.11751,-57.5717 0/0:3:3,0:3:117:0:0:0,-0.90309,-10.9102 0/1:4:2,2:2:78:2:82:-6.57556,0,-6.19918 dDocent_Contig_11154 114 . T C 647.106 . AB=0.26087;ABP=14.4341;AC=1;AF=0.125;AN=8;AO=6;CIGAR=2X;DP=59;DPB=59;DPRA=0;EPP=16.0391;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=195;QR=923;RO=27;RPL=0;RPP=16.0391;RPPR=61.6401;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=61.6401;SRR=27;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:21:8,0,13:8:271:0,13:0,448:-34.3282,-36.7364,-58.7075,0,-22.312,-18.3986 0|0:15:8,0,7:8:278:0,7:0,244:-17.7846,-20.1928,-42.7946,0,-22.9497,-20.8425 0|0:16:7,3,6:7:241:3,6:105,196:-13.7056,-7.26181,-25.9431,0,-11.026,-17.7647 0|1:7:4,3,0:4:133:3,0:90,0:-6.29019,0,-10.1912,-7.49431,-11.0943,-18.2748 dDocent_Contig_11155 26 . C A 427.991 . AB=0.365854;ABP=9.41879;AC=4;AF=0.5;AN=8;AO=15;CIGAR=1M1X;DP=41;DPB=42.5;DPRA=0;EPP=35.5824;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.6;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=601;QR=937;RO=23;RPL=0;RPP=35.5824;RPPR=52.9542;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:18:10,0,8:10:406:0,8:0,323:-24.0198,-27.0301,-60.5162,0,-33.8903,-31.4821 0|1:7:3,0,4:3:123:0,4:0,156:-12.3086,-13.2117,-23.3725,0,-10.5617,-9.35758 0|1:7:3,3,1:3:122:3,1:118,40:-8.79811,0,-9.1651,-6.40446,-6.77475,-16.1733 0|1:9:7,0,2:7:286:0,2:0,82:-5.07041,-7.17762,-30.7761,0,-24.0076,-23.4055 dDocent_Contig_11156 33 . G A 41.0421 . AB=0.2;ABP=14.7363;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=23;DPB=23;DPRA=3.75;EPP=9.52472;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=112;QR=808;RO=20;RPL=0;RPP=9.52472;RPPR=46.4397;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:7:7,0:7:278:0:0:0,-2.10721,-25.3892 0/1:15:12,3:12:490:3:112:-5.92734,0,-39.9357 0/0:1:1,0:1:40:0:0:0,-0.30103,-3.99568 ./.:.:.:.:.:.:.:. dDocent_Contig_11157 10 . G A 341.264 . AB=0.1;ABP=44.7026;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1M1X1M;DP=57;DPB=52;DPRA=0;EPP=9.52472;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.333333;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=121;QR=1499;RO=39;RPL=0;RPP=9.52472;RPPR=87.6977;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:19:17,0,2:17:659:0,2:0,80:-1.87201,-6.98951,-61.1173,0,-54.526,-53.924 0|0:19:12,7,0:12:460:7,0:266,0:-18.5814,0,-36.0301,-22.1938,-38.1373,-59.9502 0|0:8:5,3,0:5:187:3,0:95,0:-6.45199,0,-14.7819,-7.95714,-15.685,-23.3042 0|0:11:5,5,1:5:193:5,1:194,41:-14.4167,0,-14.3254,-12.5342,-12.4425,-28.0825 dDocent_Contig_11158 126 . T G 421.197 . AB=0.6875;ABP=7.89611;AC=5;AF=0.625;AN=8;AO=16;CIGAR=1X;DP=32;DPB=32;DPRA=0.636364;EPP=37.7539;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=526;QR=543;RO=16;RPL=0;RPP=37.7539;RPPR=37.7539;RPR=16;RUN=1;SAF=0;SAP=37.7539;SAR=16;SRF=0;SRP=37.7539;SRR=16;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:11,0:11:369:0:0:0,-3.31133,-33.5343 1/1:1:0,1:0:0:1:34:-3.39891,-0.30103,0 0/1:16:5,11:5:174:11:352:-27.1731,0,-11.1855 1/1:4:0,4:0:0:4:140:-12.9449,-1.20412,0 dDocent_Contig_11159 10 . G T 105.69 . AB=0.222222;ABP=21.1059;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X2M1X2M3X;DP=81;DPB=81;DPRA=1.8;EPP=16.0391;EPPR=155.013;GTI=0;LEN=1;MEANALT=1;MQM=27;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=240;QR=2670;RO=70;RPL=0;RPP=16.0391;RPPR=155.013;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=70;SRP=155.013;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:24:19,0,4:19:716:0,4:0,159:-7.36107,-13.0806,-71.7331,0,-58.6394,-57.4353 0|0:29:29,0,0:29:1112:0,0:0,0:0,-8.72987,-100.38,-8.72987,-100.38,-100.38 0|1:27:21,6,0:21:808:6,0:240,0:-6.60465,0,-64.9156,-12.9263,-66.7218,-79.3543 0|0:1:1,0,0:1:34:0,0:0,0:0,-0.30103,-3.39891,-0.30103,-3.39891,-3.39891 dDocent_Contig_11160 128 . A G 1122.47 . AB=0.0849057;ABP=161.651;AC=3;AF=0.375;AN=8;AO=9;CIGAR=4X3M;DP=106;DPB=106;DPRA=0;EPP=22.5536;EPPR=81.1833;GTI=0;LEN=1;MEANALT=4;MQM=44.4444;MQMR=60;NS=4;NUMALT=5;ODDS=0;PAIRED=0.444444;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=308;QR=1337;RO=36;RPL=0;RPP=22.5536;RPPR=81.1833;RPR=9;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=81.1833;SRR=36;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:33:16,0,0,0,12,3:16:591:0,0,0,12,3:0,0,0,416,111:-28.8368,-33.6532,-82.0181,-33.6532,-82.0181,-82.0181,-33.6532,-82.0181,-82.0181,-82.0181,0,-48.4278,-48.4278,-48.4278,-44.8154,-24.5612,-72.9344,-72.9344,-72.9344,-39.3422,-72.0313 0|1:25:3,0,0,8,10,3:3:110:0,0,8,10,3:0,0,288,357,96:-42.7119,-43.615,-52.6085,-43.615,-52.6085,-52.6085,-20.1112,-29.1068,-29.1068,-26.6986,-14.5156,-23.5117,-23.5117,0,-20.5014,-36.6999,-45.6924,-45.6924,-22.1946,-16.6016,-44.7893 0|0:29:11,7,2,0,6,2:11:411:7,2,0,6,2:261,78,0,218,64:-18.0643,0,-31.5586,-14.9601,-27.2513,-48.02,-21.3757,-33.6658,-48.622,-55.0356,-3.79056,-16.0817,-31.0378,-37.4518,-35.6456,-16.768,-29.0567,-44.0115,-50.4248,-32.8427,-49.8228 0|1:19:6,0,0,0,11,1:6:225:0,0,0,11,1:0,0,0,394,37:-30.032,-31.8382,-50.2748,-31.8382,-50.2748,-50.2748,-31.8382,-50.2748,-50.2748,-50.2748,0,-18.4418,-18.4418,-18.4418,-15.1305,-28.81,-47.2473,-47.2473,-47.2473,-15.4149,-46.9463 dDocent_Contig_11161 39 . T A 285.72 . AB=0.473684;ABP=3.12459;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1M1X4M;DP=32;DPB=31.5;DPRA=0;EPP=22.5536;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=353;QR=775;RO=20;RPL=0;RPP=22.5536;RPPR=46.4397;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:7:1,0,6:1:39:0,6:0,232:-19.1384,-19.4395,-22.6458,0,-3.59553,-1.78935 0|1:12:9,0,3:9:351:0,3:0,121:-7.66784,-10.3771,-39.2168,0,-29.2392,-28.3361 0|0:13:10,3,0:10:385:3,0:117,0:-6.99682,0,-31.0868,-10.0071,-31.9899,-41.6085 .:.:.:.:.:.:.:. dDocent_Contig_11163 9 . T A 465.908 . AB=0.21978;ABP=65.0762;AC=4;AF=0.5;AN=8;AO=20;CIGAR=1X3M;DP=91;DPB=91;DPRA=0;EPP=46.4397;EPPR=144.156;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.85;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=756;QR=2494;RO=65;RPL=0;RPP=46.4397;RPPR=144.156;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=65;SRP=144.156;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:38:29,6,3:29:1107:6,3:240,114:-11.0538,0,-89.0051,-10.4409,-81.462,-100.332 0|1:3:2,0,1:2:80:0,1:0,39:-2.99347,-3.59553,-10.1923,0,-6.98973,-6.6887 0|1:34:25,0,9:25:961:0,9:0,343:-20.9915,-28.5173,-107.406,0,-79.2706,-76.5613 0|1:16:9,0,7:9:346:0,7:0,260:-18.939,-21.6483,-50.0589,0,-28.7875,-26.6803 dDocent_Contig_11164 77 . G C 214.699 . AB=0.216216;ABP=54.7735;AC=3;AF=0.375;AN=8;AO=16;CIGAR=1X;DP=90;DPB=90;DPRA=1.54167;EPP=37.7539;EPPR=163.699;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.9375;PAIREDR=0.986486;PAO=0;PQA=0;PQR=0;PRO=0;QA=535;QR=2452;RO=74;RPL=16;RPP=37.7539;RPPR=163.699;RPR=0;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=74;SRP=163.699;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:22,5:22:693:5:163:-6.86307,0,-54.538 0/1:27:19,8:19:629:8:280:-17.4122,0,-48.7936 0/1:20:17,3:17:584:3:92:-2.56388,0,-46.8639 0/0:16:16,0:16:546:0:0:0,-4.81648,-49.4644 dDocent_Contig_11165 70 . T A 598.754 . AB=0.703704;ABP=12.7417;AC=2;AF=0.25;AN=8;AO=19;CIGAR=1X1M1X;DP=37;DPB=37;DPRA=2.7;EPP=44.2683;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=764;QR=705;RO=18;RPL=0;RPP=44.2683;RPPR=42.0968;RPR=19;RUN=1;SAF=0;SAP=44.2683;SAR=19;SRF=0;SRP=42.0968;SRR=18;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:14:7,7:7:266:7:278:-21.1763,0,-20.0848 0|0:6:6,0:6:239:0:0:0,-1.80618,-21.8848 0|1:13:1,12:1:40:12:486:-40.1779,0,-0.0822891 0|0:4:4,0:4:160:0:0:0,-1.20412,-14.7838 dDocent_Contig_11166 7 . T C 115.296 . AB=0.136364;ABP=104.082;AC=4;AF=0.5;AN=8;AO=12;CIGAR=1X;DP=88;DPB=88;DPRA=0;EPP=29.068;EPPR=168.042;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=464;QR=2903;RO=76;RPL=0;RPP=29.068;RPPR=168.042;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=76;SRP=168.042;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:20,2:20:760:2:78:-0.780813,0,-62.1051 0/1:33:28,5:28:1074:5:193:-7.80737,0,-87.0313 0/1:24:20,4:20:772:4:155:-7.10072,0,-62.5841 0/1:9:8,1:8:297:1:38:-1.088,0,-24.3722 dDocent_Contig_11167 16 . G T 320.418 . AB=0.263158;ABP=30.7823;AC=3;AF=0.375;AN=8;AO=15;CIGAR=1X;DP=79;DPB=79;DPRA=0.863636;EPP=35.5824;EPPR=141.985;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=594;QR=2588;RO=64;RPL=0;RPP=35.5824;RPPR=141.985;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=64;SRP=141.985;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:14,8:14:570:8:312:-21.8202,0,-45.0193 0/1:17:13,4:13:524:4:159:-9.57332,0,-42.3882 0/0:22:22,0:22:883:0:0:0,-6.62266,-79.7757 0/1:18:15,3:15:611:3:123:-6.04625,0,-49.9087 dDocent_Contig_11168 8 . T G 7407.12 . AB=0.0307898;ABP=1431.48;AC=4;AF=0.5;AN=8;AO=23;CIGAR=3X4M;DP=865;DPB=864.571;DPRA=0;EPP=52.9542;EPPR=456.889;GTI=0;LEN=1;MEANALT=15.3333;MQM=48.7826;MQMR=60;NS=4;NUMALT=6;ODDS=2.22045e-16;PAIRED=1;PAIREDR=0.877934;PAO=0;PQA=0;PQR=0;PRO=0;QA=833;QR=8367;RO=213;RPL=0;RPP=52.9542;RPPR=465.534;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=212;SRP=456.889;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:283:67,17,16,107,15,15,23:67:2631:17,16,107,15,15,23:666,610,3843,582,528,911:-288.258,-253.66,-464.939,-258.385,-420.015,-469.965,0,-161.629,-166.354,-184.184,-260.61,-422.241,-426.966,-168.579,-472.492,-266.492,-428.122,-432.847,-174.462,-435.073,-478.373,-233.448,-395.079,-399.805,-141.418,-402.03,-407.911,-442.922 0|1:223:42,21,14,69,25,2,16:42:1634:21,14,69,25,2,16:817,514,2648,972,77,625:-203.281,-148.783,-276.742,-173.913,-241.053,-303.979,0,-67.1398,-92.2702,-113.51,-136.203,-203.343,-228.473,-54.5601,-262.959,-209.678,-276.818,-301.947,-128.034,-264.238,-343.356,-164.544,-231.684,-256.814,-82.9007,-219.104,-292.578,-294.008 0|1:241:75,18,12,60,25,6,13:75:2947:18,12,60,25,6,13:710,455,2286,964,228,499:-163.318,-127.491,-364.466,-148.589,-332.578,-387.369,0,-183.991,-205.088,-224.332,-106.74,-290.73,-311.826,-163.239,-341.607,-167.236,-351.226,-372.322,-223.735,-330.474,-407.822,-144.958,-328.947,-350.044,-201.457,-308.196,-368.692,-383.437 0|1:118:29,8,10,32,8,0,5:29:1155:8,10,32,8,0,5:307,370,1244,319,0,200:-93.2529,-76.7847,-169.491,-71.7178,-141.634,-163.822,0,-69.9186,-64.8519,-85.4834,-75.71,-145.627,-140.56,-68.8438,-168.417,-101.983,-171.899,-166.832,-95.1164,-170.825,-197.097,-85.5071,-155.424,-150.357,-78.6408,-154.35,-180.622,-179.117 dDocent_Contig_11169 10 . G A 982.583 . AB=0.243243;ABP=108.943;AC=4;AF=0.5;AN=8;AO=45;CIGAR=1X;DP=185;DPB=185;DPRA=0;EPP=100.727;EPPR=307.016;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.0222222;PAIREDR=0.442857;PAO=0;PQA=0;PQR=0;PRO=0;QA=1777;QR=5630;RO=140;RPL=0;RPP=100.727;RPPR=307.016;RPR=45;RUN=1;SAF=45;SAP=100.727;SAR=0;SRF=140;SRP=307.016;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:61:45,16:45:1797:16:616:-37.4034,0,-143.572 0/1:56:38,18:38:1528:18:714:-47.7293,0,-120.901 0/1:39:32,7:32:1293:7:283:-14.1034,0,-104.894 0/1:29:25,4:25:1012:4:164:-6.42003,0,-82.6439 dDocent_Contig_11170 24 . G A 110.8 . AB=0.571429;ABP=3.32051;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=24;DPB=24;DPRA=1.23529;EPP=11.6962;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=55.45;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.95;PAO=0;PQA=0;PQR=0;PRO=0;QA=161;QR=786;RO=20;RPL=0;RPP=11.6962;RPPR=46.4397;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:9:9,0:9:345:0:0:0,-2.70927,-29.4001 0/0:1:1,0:1:40:0:0:0,-0.30103,-0.999609 0/0:7:7,0:7:281:0:0:0,-2.10721,-25.6622 0/1:7:3,4:3:120:4:161:-12.7677,0,-9.0801 dDocent_Contig_11171 21 . C A 3844.47 . AB=0.674242;ABP=37.8197;AC=5;AF=0.625;AN=8;AO=124;CIGAR=2X;DP=170;DPB=170;DPRA=0;EPP=272.273;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1.75;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=1.38778e-17;PAIRED=0.991935;PAIREDR=0.918919;PAO=0;PQA=0;PQR=0;PRO=0;QA=4864;QR=1469;RO=37;RPL=0;RPP=272.273;RPPR=83.3548;RPR=124;RUN=1;SAF=124;SAP=272.273;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:38:3,35,0:3:120:35,0:1367,0:-112.096,-0.251239,0,-112.999,-10.5361,-122.885 0|1:27:8,13,6:8:313:13,6:501,246:-38.7104,0,-21.8074,-20.8065,-5.40836,-44.734 0|1:59:19,40,0:19:758:40,0:1557,0:-122.612,0,-50.7803,-128.331,-62.8215,-190.758 0|1:46:7,36,2:7:278:36,2:1439,81:-116.426,0,-12.0509,-111.854,-16.2066,-134.137 dDocent_Contig_11172 7 . T C 46.8589 . AB=0.166667;ABP=26.1727;AC=2;AF=0.25;AN=8;AO=5;CIGAR=1X;DP=60;DPB=60;DPRA=0.435897;EPP=13.8677;EPPR=105.701;GTI=0;LEN=1;MEANALT=1;MQM=41;MQMR=51.6;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.654545;PAO=0;PQA=0;PQR=0;PRO=0;QA=195;QR=2049;RO=55;RPL=0;RPP=13.8677;RPPR=122.441;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=53;SRP=105.701;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:12,3:12:441:3:117:-6.07046,0,-34.9778 0/0:26:26,0:26:962:0:0:0,-7.82678,-83.9628 0/0:10:9,1:9:344:1:39:0,-0.151643,-24.2366 0/1:9:8,1:8:302:1:39:-1.07141,0,-23.4926 dDocent_Contig_11173 12 . G C 490.389 . AB=0.295775;ABP=28.7315;AC=4;AF=0.5;AN=8;AO=21;CIGAR=2X;DP=71;DPB=71;DPRA=0;EPP=48.6112;EPPR=109.412;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=838;QR=1922;RO=49;RPL=0;RPP=48.6112;RPPR=109.412;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:22:20,2:20:768:2:81:-1.06307,0,-62.805 0|1:32:21,11:21:831:11:432:-29.6002,0,-65.4743 0|1:14:7,7:7:282:7:284:-21.7194,0,-21.5385 0|1:3:1,1:1:41:1:41:-3.08799,0,-3.08799 dDocent_Contig_11174 15 . T C 48.7671 . AB=0.5;ABP=3.0103;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=55;DPB=55;DPRA=0.617647;EPP=9.52472;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=0.666667;PAIREDR=0.673077;PAO=0;PQA=0;PQR=0;PRO=0;QA=123;QR=2076;RO=52;RPL=0;RPP=9.52472;RPPR=115.927;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:27:27,0:27:1085:0:0:0,-8.12781,-97.9321 0/0:17:16,1:16:633:1:41:0,-1.02294,-53.2081 0/0:7:7,0:7:276:0:0:0,-2.10721,-25.2041 0/1:4:2,2:2:82:2:82:-6.57556,0,-6.57556 dDocent_Contig_11175 129 . A T 115.311 . AB=0.529412;ABP=3.13803;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=46;DPB=46;DPRA=1.17241;EPP=22.5536;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=23.2222;MQMR=55.4595;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.891892;PAO=0;PQA=0;PQR=0;PRO=0;QA=321;QR=1431;RO=37;RPL=0;RPP=22.5536;RPPR=83.3548;RPR=9;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=83.3548;SRR=37;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:19:19,0:19:765:0:0:0,-5.71957,-63.7457 0/1:17:8,9:8:263:9:321:-13.355,0,-17.029 0/0:10:10,0:10:403:0:0:0,-3.0103,-36.6301 ./.:.:.:.:.:.:.:. dDocent_Contig_11177 43 . T A 141.364 . AB=0.285714;ABP=11.386;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=77;DPB=77;DPRA=1.125;EPP=16.0391;EPPR=157.185;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.666667;PAIREDR=0.56338;PAO=0;PQA=0;PQR=0;PRO=0;QA=242;QR=2835;RO=71;RPL=0;RPP=16.0391;RPPR=157.185;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=71;SRP=157.185;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:27:27,0:27:1082:0:0:0,-8.12781,-97.6691 0/0:21:21,0:21:836:0:0:0,-6.32163,-75.5513 0/1:21:15,6:15:606:6:242:-15.8353,0,-48.5568 0/0:8:8,0:8:311:0:0:0,-2.40824,-28.3493 dDocent_Contig_11178 107 . N G 983.913 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=34;CIGAR=1X;DP=34;DPB=34;DPRA=0;EPP=76.8404;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=28.1722;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1090;QR=0;RO=0;RPL=0;RPP=76.8404;RPPR=0;RPR=34;RUN=1;SAF=0;SAP=76.8404;SAR=34;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:34:0,34:0:0:34:1090:-98.3913,-10.235,0 dDocent_Contig_11179 28 . T C 118.189 . AB=0.206897;ABP=24.6501;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=74;DPB=74;DPRA=1.93333;EPP=16.0391;EPPR=133.81;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.941176;PAO=0;PQA=0;PQR=0;PRO=0;QA=243;QR=2696;RO=68;RPL=0;RPP=16.0391;RPPR=150.67;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=66;SRP=133.81;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:31:31,0:31:1231:0:0:0,-9.33193,-111.062 0/1:29:23,6:23:917:6:243:-13.5177,0,-74.1055 0/0:11:11,0:11:430:0:0:0,-3.31133,-39.0505 0/0:3:3,0:3:118:0:0:0,-0.90309,-11.0025 dDocent_Contig_11181 15 . G C 164.463 . AB=0.135458;ABP=292.733;AC=3;AF=0.375;AN=8;AO=41;CIGAR=1X;DP=315;DPB=315;DPRA=0;EPP=92.0407;EPPR=597.994;GTI=0;LEN=1;MEANALT=1;MQM=35.5366;MQMR=59.6971;NS=4;NUMALT=1;ODDS=0;PAIRED=0.512195;PAIREDR=0.467153;PAO=0;PQA=0;PQR=0;PRO=0;QA=1647;QR=10851;RO=274;RPL=0;RPP=92.0407;RPPR=597.994;RPR=41;RUN=1;SAF=41;SAP=92.0407;SAR=0;SRF=274;SRP=597.994;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:129:111,18:111:4395:18:727:-17.8274,0,-356.561 0/1:86:76,10:76:3026:10:398:-0.204465,0,-246.53 0/0:64:57,7:57:2248:7:278:0,-6.30219,-189.351 0/1:36:30,6:30:1182:6:244:-1.15258,0,-95.7542 dDocent_Contig_11182 9 . T A 56.1894 . AB=0.307692;ABP=7.18621;AC=1;AF=0.125;AN=8;AO=13;CIGAR=2X;DP=95;DPB=95;DPRA=0;EPP=31.2394;EPPR=176.728;GTI=0;LEN=1;MEANALT=1.5;MQM=17.3077;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.307692;PAIREDR=0.975;PAO=0;PQA=0;PQR=0;PRO=0;QA=517;QR=3118;RO=80;RPL=0;RPP=31.2394;RPPR=176.728;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=80;SRP=176.728;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:16:13,3:13:517:3:117:0,-3.41682,-45.4795 0|0:38:36,1:36:1392:1:40:0,-10.7982,-124.938 0|0:28:22,5:22:860:5:200:0,-2.96246,-72.2776 0|1:13:9,4:9:349:4:160:-7.31791,0,-27.854 dDocent_Contig_11183 12 . C T 191.432 . AB=0.214286;ABP=32.7905;AC=1;AF=0.125;AN=8;AO=13;CIGAR=1X;DP=146;DPB=146;DPRA=1.87879;EPP=31.2394;EPPR=291.816;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=57.8346;NS=4;NUMALT=1;ODDS=0;PAIRED=0.923077;PAIREDR=0.962406;PAO=0;PQA=0;PQR=0;PRO=0;QA=531;QR=5331;RO=133;RPL=0;RPP=31.2394;RPPR=291.816;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=133;SRP=291.816;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:42:39,3:39:1552:3:123:0,-1.17847,-123.834 0/1:42:33,9:33:1327:9:368:-20.8421,0,-101.846 0/0:40:39,1:39:1571:1:40:0,-8.04552,-135.824 0/0:22:22,0:22:881:0:0:0,-6.62266,-79.5977 dDocent_Contig_11184 19 . G T 528.559 . AB=0.309859;ABP=25.3061;AC=3;AF=0.375;AN=8;AO=23;CIGAR=1X;DP=85;DPB=85;DPRA=0;EPP=52.9542;EPPR=137.642;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=899;QR=2470;RO=62;RPL=0;RPP=52.9542;RPPR=137.642;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:14:13,1:13:517:1:39:0,-0.317855,-42.9796 0/1:40:27,13:27:1082:13:515:-34.6576,0,-85.6269 0/1:22:20,2:20:794:2:79:-0.874972,0,-65.1543 0/1:9:2,7:2:77:7:266:-21.5874,0,-4.59893 dDocent_Contig_11185 10 . G C 973.571 . AB=0.333333;ABP=30.5156;AC=4;AF=0.5;AN=8;AO=38;CIGAR=1X;DP=114;DPB=114;DPRA=0;EPP=85.5263;EPPR=165.871;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.973333;PAO=0;PQA=0;PQR=0;PRO=0;QA=1530;QR=2971;RO=75;RPL=0;RPP=85.5263;RPPR=165.871;RPR=38;RUN=1;SAF=38;SAP=85.5263;SAR=0;SRF=75;SRP=165.871;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:37:25,11:25:993:11:444:-29.0729,0,-78.4237 0/1:17:15,2:15:601:2:81:-2.56822,0,-49.3104 0/1:37:21,16:21:842:16:645:-47.2465,0,-64.9556 0/1:23:14,9:14:535:9:360:-25.839,0,-41.5508 dDocent_Contig_11186 22 . G T 162.038 . AB=0.315789;ABP=8.61041;AC=1;AF=0.125;AN=8;AO=6;CIGAR=4M1X2M;DP=78;DPB=77.2857;DPRA=0.966102;EPP=16.0391;EPPR=144.156;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0.615385;PAO=0;PQA=0;PQR=0;PRO=0;QA=246;QR=2505;RO=65;RPL=0;RPP=16.0391;RPPR=144.156;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=65;SRP=144.156;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:19:18,0,0:18:695:0,0:0,0:0,-5.41854,-62.5067,-5.41854,-62.5067,-62.5067 0|0:34:34,0,0:34:1298:0,0:0,0:0,-10.235,-117.103,-10.235,-117.103,-117.103 0|1:19:8,5,6:8:316:5,6:199,246:-17.9027,-3.93103,-28.4211,0,-9.61538,-24.1957 0|0:6:5,0,0:5:196:0,0:0,0:0,-1.50515,-17.6252,-1.50515,-17.6252,-17.6252 dDocent_Contig_11187 27 . C A 50.0827 . AB=0.153846;ABP=30.0702;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=54;DPB=54;DPRA=2.78571;EPP=11.6962;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.98;PAO=0;PQA=0;PQR=0;PRO=0;QA=154;QR=1962;RO=50;RPL=0;RPP=11.6962;RPPR=111.584;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:22,4:22:868:4:154:-6.4061,0,-70.6069 0/0:5:5,0:5:196:0:0:0,-1.50515,-18.0131 0/0:19:19,0:19:740:0:0:0,-5.71957,-66.9209 0/0:4:4,0:4:158:0:0:0,-1.20412,-14.6 dDocent_Contig_11192 107 . N T 731.156 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=24;CIGAR=1X;DP=24;DPB=24;DPRA=0;EPP=55.1256;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=796;QR=0;RO=0;RPL=0;RPP=55.1256;RPPR=0;RPR=24;RUN=1;SAF=0;SAP=55.1256;SAR=24;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:18:0,18:0:0:18:590:-53.4124,-5.41854,0 1/1:1:0,1:0:0:1:35:-3.49863,-0.30103,0 1/1:5:0,5:0:0:5:171:-15.7266,-1.50515,0 ./.:.:.:.:.:.:.:. dDocent_Contig_11194 10 . C G 119.94 . AB=0.26087;ABP=14.4341;AC=2;AF=0.25;AN=8;AO=6;CIGAR=1X;DP=44;DPB=44;DPRA=1.09524;EPP=16.0391;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=53;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=230;QR=1538;RO=38;RPL=0;RPP=16.0391;RPPR=85.5263;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:10,1:10:404:1:41:-0.7621,0,-33.4076 0/0:17:17,0:17:693:0:0:0,-5.11751,-62.698 0/1:12:7,5:7:278:5:189:-13.6867,0,-21.7768 0/0:4:4,0:4:163:0:0:0,-1.20412,-15.0584 dDocent_Contig_11195 109 . A G 49.5426 . AB=0.285714;ABP=8.59409;AC=2;AF=0.25;AN=8;AO=4;CIGAR=1X;DP=32;DPB=32;DPRA=0.777778;EPP=11.6962;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=48;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.5;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=137;QR=949;RO=28;RPL=0;RPP=11.6962;RPPR=63.8115;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=63.8115;SRR=28;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:9,2:9:313:2:67:-3.05171,0,-25.1957 0/0:15:15,0:15:497:0:0:0,-4.51545,-45.0462 0/1:3:1,2:1:35:2:70:-5.26461,0,-2.59554 0/0:3:3,0:3:104:0:0:0,-0.90309,-9.70309 dDocent_Contig_11196 117 . T C 75.0946 . AB=0.333333;ABP=5.9056;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=19;DPB=19;DPRA=3.42857;EPP=11.6962;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=140;QR=504;RO=15;RPL=0;RPP=11.6962;RPPR=35.5824;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=35.5824;SRR=15;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:6:6,0:6:209:0:0:0,-1.80618,-19.1511 0/1:12:8,4:8:261:4:140:-9.33257,0,-20.1968 0/0:1:1,0:1:34:0:0:0,-0.30103,-3.39891 ./.:.:.:.:.:.:.:. dDocent_Contig_11197 193 . T C 150.176 . AB=0;ABP=0;AC=2;AF=0.25;AN=8;AO=4;CIGAR=1X;DP=30;DPB=30;DPRA=0.461538;EPP=11.6962;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=156;QR=996;RO=26;RPL=4;RPP=11.6962;RPPR=59.4686;RPR=0;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=59.4686;SRR=26;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:4:0,4:0:0:4:156:-14.4149,-1.20412,0 0/0:18:18,0:18:684:0:0:0,-5.41854,-61.8757 0/0:1:1,0:1:40:0:0:0,-0.30103,-3.99568 0/0:7:7,0:7:272:0:0:0,-2.10721,-24.8442 dDocent_Contig_11198 98 . N A 102.442 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=3;CIGAR=2X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=103;QR=0;RO=0;RPL=3;RPP=9.52472;RPPR=0;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. 1|1:2:0,2:0:0:2:71:-6.74206,-0.60206,0 1|1:1:0,1:0:0:1:32:-3.19931,-0.30103,0 dDocent_Contig_11199 184 . C T 60.2855 . AB=0.25;ABP=9.52472;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=26;DPB=26;DPRA=1.71429;EPP=9.52472;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=123;QR=910;RO=23;RPL=3;RPP=9.52472;RPPR=52.9542;RPR=0;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=52.9542;SRR=23;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 0/0:8:8,0:8:316:0:0:0,-2.40824,-28.8041 0/1:12:9,3:9:357:3:123:-7.85243,0,-28.8762 0/0:6:6,0:6:237:0:0:0,-1.80618,-21.7011 dDocent_Contig_11200 10 . C G 33.965 . AB=0.142857;ABP=18.5208;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=2M5I2M1X3M1X3M9I1X;DP=27;DPB=30.1538;DPRA=2.15385;EPP=7.35324;EPPR=35.5824;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=78;QR=593;RO=15;RPL=0;RPP=7.35324;RPPR=35.5824;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=15;SRP=35.5824;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:14:5,2:5:199:2:78:-4.91911,0,-15.8112 0|0:8:5,0:5:199:0:0:0,-1.50515,-17.9462 0|0:5:5,0:5:195:0:0:0,-1.50515,-17.924 .:.:.:.:.:.:.:. dDocent_Contig_11201 15 . G T 31.4347 . AB=0.136364;ABP=28.2783;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=78;DPB=78;DPRA=1.17857;EPP=9.52472;EPPR=117.925;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.72;PAO=0;PQA=0;PQR=0;PRO=0;QA=123;QR=2984;RO=75;RPL=0;RPP=9.52472;RPPR=165.871;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=69;SRP=117.925;SRR=6;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:28:28,0:28:1106:0:0:0,-8.42884,-99.82 0/1:22:19,3:19:762:3:123:-4.84213,0,-62.2771 0/0:15:15,0:15:600:0:0:0,-4.51545,-54.3363 0/0:13:13,0:13:516:0:0:0,-3.91339,-46.7865 dDocent_Contig_11202 10 . C T 983.895 . AB=0.44;ABP=4.57376;AC=5;AF=0.625;AN=8;AO=32;CIGAR=1X;DP=60;DPB=60;DPRA=0;EPP=72.4974;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1304;QR=1134;RO=28;RPL=0;RPP=72.4974;RPPR=63.8115;RPR=32;RUN=1;SAF=32;SAP=72.4974;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:10:0,10:0:0:10:407:-36.9906,-3.0103,0 0/1:19:8,11:8:327:11:447:-34.8659,0,-24.0805 0/1:16:8,8:8:328:8:328:-25.0739,0,-25.0739 0/1:15:12,3:12:479:3:122:-6.85704,0,-38.9418 dDocent_Contig_11203 1 . N G 110.027 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=118;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:118:-11.0022,-0.90309,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_11204 42 . C G 74.3062 . AB=0.192308;ABP=24.391;AC=2;AF=0.25;AN=8;AO=5;CIGAR=1X;DP=52;DPB=52;DPRA=1;EPP=13.8677;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.978723;PAO=0;PQA=0;PQR=0;PRO=0;QA=198;QR=1906;RO=47;RPL=0;RPP=13.8677;RPPR=105.07;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:17,2:17:685:2:78:-1.68373,0,-56.2601 0/0:19:19,0:19:775:0:0:0,-5.71957,-70.0679 0/0:7:7,0:7:283:0:0:0,-2.10721,-25.8436 0/1:7:4,3:4:163:3:120:-9.0801,0,-12.9512 dDocent_Contig_11205 28 . A C 527.353 . AB=0.126316;ABP=348.686;AC=4;AF=0.5;AN=8;AO=36;CIGAR=3M1X1M;DP=285;DPB=282;DPRA=0;EPP=81.1833;EPPR=463.362;GTI=0;LEN=1;MEANALT=2.75;MQM=58.5;MQMR=60;NS=4;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1375;QR=7829;RO=212;RPL=0;RPP=81.1833;RPPR=463.362;RPR=36;RUN=1;SAF=36;SAP=81.1833;SAR=0;SRF=212;SRP=463.362;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:140:108,8,0,12,11:108:3985:8,0,12,11:307,0,385,422:-2.14561,-9.73163,-333.241,-34.6568,-335.65,-360.565,-4.83754,-305.814,-330.729,-327.116,0,-301.01,-325.926,-296.09,-322.614 0|1:63:38,0,7,0,16:38:1428:0,7,0,16:0,268,0,629:-40.323,-51.7621,-168.749,-29.7677,-146.756,-144.649,-51.7621,-168.749,-146.756,-168.749,0,-117.008,-95.0137,-117.008,-112.192 0|1:47:36,0,7,0,4:36:1334:0,7,0,4:0,260,0,130:-10.4696,-21.3067,-130.456,0,-109.18,-107.073,-21.3067,-130.456,-109.18,-130.456,-10.993,-120.128,-98.8532,-120.128,-118.924 0|1:35:30,0,0,0,5:30:1082:0,0,0,5:0,0,0,194:-7.12369,-16.1546,-104.421,-16.1546,-104.421,-104.421,-16.1546,-104.421,-104.421,-104.421,0,-88.6473,-88.6473,-88.6473,-87.1422 dDocent_Contig_11206 12 . T C 216.27 . AB=0.206897;ABP=46.29;AC=4;AF=0.5;AN=8;AO=12;CIGAR=1X;DP=58;DPB=58;DPRA=0;EPP=29.068;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.5;PAIREDR=0.891304;PAO=0;PQA=0;PQR=0;PRO=0;QA=479;QR=1778;RO=46;RPL=0;RPP=29.068;RPPR=102.898;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:15,3:15:583:3:123:-6.04625,0,-47.3911 0/1:15:9,6:9:349:6:237:-17.1849,0,-27.2537 0/1:13:12,1:12:454:1:41:-0.181177,0,-37.2889 0/1:12:10,2:10:392:2:78:-3.79042,0,-32.0258 dDocent_Contig_11209 10 . C T 1162.77 . AB=0.16;ABP=103.419;AC=1;AF=0.125;AN=8;AO=16;CIGAR=1X2M1X5M;DP=100;DPB=100;DPRA=0;EPP=37.7539;EPPR=65.983;GTI=0;LEN=1;MEANALT=3.75;MQM=60;MQMR=60;NS=4;NUMALT=5;ODDS=0;PAIRED=1;PAIREDR=0.862069;PAO=0;PQA=0;PQR=0;PRO=0;QA=623;QR=1137;RO=29;RPL=0;RPP=37.7539;RPPR=65.983;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:25:8,5,2,0,0,10:8:318:5,2,0,0,10:188,78,0,0,404:-30.912,-17.926,-42.6006,-26.9092,-37.6952,-52.4895,-33.3203,-44.1057,-53.0916,-59.5027,-33.3203,-44.1057,-53.0916,-59.5027,-59.5027,0,-10.7955,-19.779,-26.1907,-26.1907,-23.1804 0|0:46:17,7,0,1,5,14:17:664:7,0,1,5,14:279,0,41,200,563:-41.2841,-23.4244,-75.9006,-46.4016,-78.0078,-100.985,-43.017,-74.6233,-97.6005,-97.2995,-29.927,-61.5331,-84.5105,-81.126,-83.0054,0,-31.6068,-54.5854,-51.2007,-38.11,-50.371 0|0:27:4,3,0,3,3,14:4:155:3,0,3,3,14:115,0,119,121,554:-44.3869,-36.1547,-47.9837,-45.591,-48.8868,-58.3236,-35.7951,-39.0909,-48.5276,-47.6245,-35.6156,-38.9114,-48.3482,-38.552,-47.4451,0,-3.29614,-12.7316,-2.9346,-2.75405,-8.51715 1|0:2:0,1,0,0,0,1:0:0:1,0,0,0,1:41,0,0,0,40:-7.08367,-3.69465,-3.39362,-7.08367,-3.69465,-7.08367,-7.08367,-3.69465,-7.08367,-7.08367,-7.08367,-3.69465,-7.08367,-7.08367,-7.08367,-3.79354,0,-3.79354,-3.79354,-3.79354,-3.49251 dDocent_Contig_11210 57 . A T 284.898 . AB=0.302326;ABP=17.6046;AC=3;AF=0.375;AN=8;AO=13;CIGAR=1M2I1M1X2M1X1M1X1M2D1X;DP=50;DPB=49.6667;DPRA=2.04762;EPP=31.2394;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=509;QR=1238;RO=36;RPL=13;RPP=31.2394;RPPR=81.1833;RPR=0;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=0;SRP=81.1833;SRR=36;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:7:7,0:7:243:0:0:0,-2.10721,-22.2089 0|1:15:10,5:10:341:5:198:-13.6821,0,-26.505 0|1:7:5,2:5:175:2:75:-5.01238,0,-13.9865 0|1:21:14,6:14:479:6:236:-15.1931,0,-37.0204 dDocent_Contig_11211 4 . A T 104.924 . AB=0.4;ABP=4.31318;AC=2;AF=0.25;AN=8;AO=7;CIGAR=1X;DP=42;DPB=42;DPRA=0.939394;EPP=18.2106;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=52.7143;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=223;QR=1197;RO=35;RPL=0;RPP=18.2106;RPPR=79.0118;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=79.0118;SRR=35;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:11,0:11:384:0:0:0,-3.31133,-34.8956 0/1:8:3,5:3:105:5:159:-12.1846,0,-7.38792 0/0:16:15,1:15:495:1:35:0,-1.32191,-41.371 0/1:7:6,1:6:213:1:29:-0.791421,0,-17.409 dDocent_Contig_11212 9 . T C 989.824 . AB=0.219828;ABP=161.191;AC=4;AF=0.5;AN=8;AO=51;CIGAR=1X;DP=232;DPB=232;DPRA=0;EPP=113.755;EPPR=368.252;GTI=0;LEN=1;MEANALT=1.25;MQM=59.3333;MQMR=56.5056;NS=4;NUMALT=1;ODDS=0;PAIRED=0.960784;PAIREDR=0.883333;PAO=0;PQA=0;PQR=0;PRO=0;QA=1946;QR=6885;RO=180;RPL=0;RPP=113.755;RPPR=393.875;RPR=51;RUN=1;SAF=51;SAP=113.755;SAR=0;SRF=177;SRP=368.252;SRR=3;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:91:68,23:68:2597:23:882:-52.1037,0,-195.212 0/1:102:83,18:83:3179:18:686:-31.2678,0,-255.306 0/1:28:23,5:23:879:5:194:-9.404,0,-61.4897 0/1:11:6,5:6:230:5:184:-13.6048,0,-13.7208 dDocent_Contig_11213 141 . C T 387.405 . AB=0.05;ABP=73.366;AC=0;AF=0;AN=8;AO=2;CIGAR=2M1X2M;DP=119;DPB=114.2;DPRA=1.42857;EPP=7.35324;EPPR=204.957;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=6.93889e-18;PAIRED=0;PAIREDR=0.258065;PAO=0;PQA=0;PQR=0;PRO=0;QA=72;QR=3143;RO=93;RPL=0;RPP=7.35324;RPPR=204.957;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=204.957;SRR=93;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:40:25,13,2:25:828:13,2:437,72:-27.8573,0,-63.03,-29.505,-61.0664,-95.8697 0|0:43:39,4,0:39:1322:4,0:132,0:0,-0.737663,-107.072,-11.7402,-108.276,-118.948 0|0:23:16,7,0:16:552:7,0:232,0:-14.281,0,-43.0829,-19.0975,-45.1901,-63.9521 0|0:13:13,0,0:13:441:0,0:0,0:0,-3.91339,-40.0156,-3.91339,-40.0156,-40.0156 dDocent_Contig_11215 114 . C A 361.802 . AB=0.384615;ABP=6.01695;AC=5;AF=0.625;AN=8;AO=15;CIGAR=1X;DP=31;DPB=31;DPRA=0;EPP=35.5824;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.933333;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=533;QR=519;RO=16;RPL=0;RPP=35.5824;RPPR=37.7539;RPR=15;RUN=1;SAF=0;SAP=35.5824;SAR=15;SRF=0;SRP=37.7539;SRR=16;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:5:0,5:0:0:5:176:-16.1853,-1.50515,0 0/1:2:1,1:1:34:1:36:-2.99621,0,-2.79685 0/1:10:8,2:8:245:2:72:-3.82642,0,-19.3375 0/1:14:7,7:7:240:7:249:-18.5412,0,-17.7199 dDocent_Contig_11216 18 . T C 43.5411 . AB=0.137931;ABP=36.0317;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=78;DPB=78;DPRA=1.77551;EPP=11.6962;EPPR=163.699;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=160;QR=2962;RO=74;RPL=0;RPP=11.6962;RPPR=163.699;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=74;SRP=163.699;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:25:25,0:25:984:0:0:0,-7.52575,-88.8499 0/1:29:25,4:25:1003:4:160:-6.05305,0,-81.837 0/0:18:18,0:18:729:0:0:0,-5.41854,-65.9338 0/0:6:6,0:6:246:0:0:0,-1.80618,-22.5201 dDocent_Contig_11218 21 . T A 175.133 . AB=0.333333;ABP=8.07707;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=28;DPB=28;DPRA=1.5;EPP=18.2106;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=285;QR=837;RO=21;RPL=0;RPP=18.2106;RPPR=48.6112;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:10,1:10:394:1:41:-0.783237,0,-32.5052 0/1:10:4,6:4:164:6:244:-19.3285,0,-12.1396 0/0:7:7,0:7:279:0:0:0,-2.10721,-25.4788 ./.:.:.:.:.:.:.:. dDocent_Contig_11220 7 . T C 465.091 . AB=0.338983;ABP=16.2968;AC=3;AF=0.375;AN=8;AO=20;CIGAR=1X;DP=63;DPB=63;DPRA=4.91667;EPP=46.4397;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.85;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=762;QR=1651;RO=43;RPL=0;RPP=46.4397;RPPR=96.3836;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:21,8:21:804:8:306:-19.1706,0,-63.9544 0/1:22:15,7:15:579:7:266:-17.6779,0,-45.8303 0/1:8:3,5:3:113:5:190:-15.0585,0,-8.13073 0/0:4:4,0:4:155:0:0:0,-1.20412,-14.3254 dDocent_Contig_11221 20 . A G 79.8717 . AB=0;ABP=0;AC=2;AF=0.25;AN=8;AO=3;CIGAR=1X;DP=59;DPB=59;DPRA=0.84375;EPP=9.52472;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.964286;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=2239;RO=56;RPL=0;RPP=9.52472;RPPR=124.613;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:25:24,1:24:953:1:41:0,-3.43118,-81.9764 0/0:29:29,0:29:1163:0:0:0,-8.72987,-104.951 1/1:2:0,2:0:0:2:81:-7.68573,-0.60206,0 0/0:3:3,0:3:123:0:0:0,-0.90309,-11.4648 dDocent_Contig_11222 28 . A T 234.018 . AB=0.24;ABP=17.6895;AC=3;AF=0.375;AN=8;AO=6;CIGAR=1X1M1X;DP=34;DPB=34;DPRA=0;EPP=16.0391;EPPR=30.8051;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=59.15;NS=4;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0.85;PAO=0;PQA=0;PQR=0;PRO=0;QA=230;QR=788;RO=20;RPL=0;RPP=16.0391;RPPR=46.4397;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=18;SRP=30.8051;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:9:6,0,3:6:244:0,3:0,116:-8.10843,-9.91461,-30.0543,0,-20.5326,-19.6296 0|1:11:10,1,0:10:385:1,0:38,0:-0.485939,0,-31.67,-3.49624,-31.971,-35.0871 0|1:9:4,2,2:4:159:2,2:78,76:-5.21028,0,-12.4969,-0.185352,-6.87046,-12.6785 1|0:5:0,3,2:0:0:3,2:114,70:-15.4124,-6.04506,-5.14197,-9.72913,0,-9.12707 dDocent_Contig_11223 8 . T C 950.447 . AB=0.447761;ABP=4.59839;AC=5;AF=0.625;AN=8;AO=34;CIGAR=1X;DP=71;DPB=71;DPRA=0;EPP=76.8404;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1324;QR=1413;RO=37;RPL=0;RPP=76.8404;RPPR=83.3548;RPR=34;RUN=1;SAF=34;SAP=76.8404;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:35:21,14:21:804:14:545:-38.8602,0,-62.1499 0/1:27:14,13:14:531:13:507:-37.8516,0,-40.005 0/1:5:2,3:2:78:3:117:-9.40523,0,-5.89832 1/1:4:0,4:0:0:4:155:-14.3254,-1.20412,0 dDocent_Contig_11224 8 . T A 3358.97 . AB=0.289216;ABP=160.463;AC=4;AF=0.5;AN=8;AO=118;CIGAR=1X6M;DP=408;DPB=408.286;DPRA=0;EPP=259.244;EPPR=317.932;GTI=0;LEN=1;MEANALT=5;MQM=60;MQMR=60;NS=4;NUMALT=5;ODDS=0;PAIRED=1;PAIREDR=0.959732;PAO=0;PQA=0;PQR=0;PRO=0;QA=4518;QR=5825;RO=149;RPL=0;RPP=259.244;RPPR=326.56;RPR=118;RUN=1;SAF=118;SAP=259.244;SAR=0;SRF=148;SRP=317.932;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:205:78,40,10,55,4,13:78:3059:40,10,55,4,13:1567,375,2101,162,522:-148.898,-43.521,-283.046,-141.664,-264.372,-390.218,0,-122.707,-220.848,-235.006,-159.02,-281.728,-379.87,-238.204,-409.381,-129.364,-252.073,-350.215,-208.549,-367.571,-377.016 0|1:145:50,9,27,49,0,10:50:1958:9,27,49,0,10:353,1031,1893,0,398:-140.426,-126.447,-284.741,-70.8901,-202.862,-223.765,0,-131.973,-76.4169,-146.253,-155.478,-287.45,-231.892,-161.003,-316.48,-122.708,-254.68,-199.123,-128.234,-283.711,-280.701 0|1:32:13,0,10,9,0,0:13:498:0,10,9,0,0:0,384,331,0,0:-27.6172,-31.5306,-72.3976,0,-40.8733,-37.863,-4.47875,-45.3425,-13.82,-42.6332,-31.5306,-72.3976,-40.8733,-45.3425,-72.3976,-31.5306,-72.3976,-40.8733,-45.3425,-72.3976,-72.3976 0|1:26:8,0,9,5,2,1:8:310:0,9,5,2,1:0,350,193,82,39:-26.3531,-28.7613,-54.2269,0,-25.4639,-22.7547,-12.9128,-38.3773,-9.61531,-36.8722,-21.9908,-47.4571,-18.6932,-31.6072,-46.855,-25.5555,-51.021,-22.2581,-35.1715,-44.2511,-50.72 dDocent_Contig_11225 23 . A T 120.298 . AB=0.25;ABP=16.0391;AC=2;AF=0.25;AN=8;AO=6;CIGAR=1X;DP=38;DPB=38;DPRA=1.71429;EPP=16.0391;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.5;PAIREDR=0.71875;PAO=0;PQA=0;PQR=0;PRO=0;QA=243;QR=1274;RO=32;RPL=0;RPP=16.0391;RPPR=72.4974;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:6:6,0:6:242:0:0:0,-1.80618,-22.1573 0/1:13:10,3:10:404:3:122:-7.4591,0,-32.8067 0/1:11:8,3:8:309:3:121:-7.96866,0,-24.8572 0/0:8:8,0:8:319:0:0:0,-2.40824,-29.0743 dDocent_Contig_11228 15 . A T 471.654 . AB=0.521739;ABP=3.10471;AC=3;AF=0.5;AN=6;AO=12;CIGAR=1X2M;DP=32;DPB=32;DPRA=1.27778;EPP=29.068;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=474;QR=629;RO=16;RPL=0;RPP=29.068;RPPR=37.7539;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:7:0,4,3:0:0:4,3:158,118:-23.1027,-10.0998,-8.89568,-13.3965,0,-12.4934 0|1:16:7,0,9:7:278:0,9:0,356:-27.5856,-29.6928,-52.5805,0,-23.2837,-20.5744 0|0:9:9,0,0:9:351:0,0:0,0:0,-2.70927,-31.9489,-2.70927,-31.9489,-31.9489 .:.:.:.:.:.:.:. dDocent_Contig_11229 25 . T G 114.508 . AB=0.24;ABP=17.6895;AC=2;AF=0.25;AN=8;AO=6;CIGAR=1X;DP=30;DPB=30;DPRA=5;EPP=16.0391;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=0;PAIREDR=0.75;PAO=0;PQA=0;PQR=0;PRO=0;QA=240;QR=958;RO=24;RPL=0;RPP=16.0391;RPPR=55.1256;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:10,3:10:403:3:122:-7.4591,0,-32.7162 0/0:2:2,0:2:82:0:0:0,-0.60206,-7.77968 0/1:12:9,3:9:359:3:118:-7.38922,0,-29.058 0/0:3:3,0:3:114:0:0:0,-0.90309,-10.6319 dDocent_Contig_11230 7 . T A 429.342 . AB=0.180556;ABP=130.645;AC=3;AF=0.375;AN=8;AO=28;CIGAR=1X;DP=201;DPB=201;DPRA=0;EPP=63.8115;EPPR=376.504;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=58.5756;NS=4;NUMALT=1;ODDS=0;PAIRED=0.107143;PAIREDR=0.44186;PAO=0;PQA=0;PQR=0;PRO=0;QA=1083;QR=6593;RO=172;RPL=0;RPP=63.8115;RPPR=376.504;RPR=28;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=172;SRP=376.504;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:57:55,2:55:2106:2:78:0,-9.75524,-182.242 0/1:81:64,17:64:2456:17:662:-35.5337,0,-196.348 0/1:46:40,5:40:1532:5:191:-3.86522,0,-124.296 0/1:17:13,4:13:499:4:152:-8.93169,0,-40.0425 dDocent_Contig_11231 91 . T G 547.056 . AB=0.38806;ABP=10.3026;AC=3;AF=0.375;AN=8;AO=26;CIGAR=1X;DP=75;DPB=75;DPRA=2.79167;EPP=59.4686;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=881;QR=1667;RO=49;RPL=26;RPP=59.4686;RPPR=109.412;RPR=0;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:16,13:16:542:13:452:-32.2824,0,-40.3716 0/1:30:22,8:22:769:8:261:-14.7782,0,-60.5016 0/0:8:8,0:8:251:0:0:0,-2.40824,-22.8955 0/1:8:3,5:3:105:5:168:-13.0429,0,-7.38792 dDocent_Contig_11232 11 . A G 96.7007 . AB=0.25;ABP=13.8677;AC=2;AF=0.25;AN=8;AO=5;CIGAR=1X;DP=51;DPB=51;DPRA=0.645161;EPP=13.8677;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=203;QR=1851;RO=46;RPL=0;RPP=13.8677;RPPR=102.898;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:11,4:11:447:4:162:-10.4515,0,-36.0706 0/0:21:21,0:21:845:0:0:0,-6.32163,-76.3633 0/1:5:4,1:4:156:1:41:-2.58942,0,-12.909 0/0:10:10,0:10:403:0:0:0,-3.0103,-36.6295 dDocent_Contig_11233 7 . T C 3006.34 . AB=0.579235;ABP=12.9896;AC=4;AF=0.5;AN=8;AO=106;CIGAR=1X;DP=183;DPB=183;DPRA=0;EPP=233.186;EPPR=170.214;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4020;QR=2900;RO=77;RPL=0;RPP=233.186;RPPR=170.214;RPR=106;RUN=1;SAF=106;SAP=233.186;SAR=0;SRF=77;SRP=170.214;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:43:8,35:8:308:35:1307:-104.968,0,-15.1375 0/1:68:26,42:26:997:42:1606:-124.337,0,-69.5718 0/1:66:42,24:42:1556:24:913:-62.6197,0,-120.435 0/1:6:1,5:1:39:5:194:-16.0267,0,-2.09038 dDocent_Contig_11234 49 . C T 3871.92 . AB=0.64557;ABP=32.0915;AC=7;AF=0.875;AN=8;AO=102;CIGAR=1X19M;DP=158;DPB=163.8;DPRA=0;EPP=224.5;EPPR=31.2394;GTI=0;LEN=1;MEANALT=3.75;MQM=60;MQMR=60;NS=4;NUMALT=4;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4032;QR=504;RO=13;RPL=102;RPP=224.5;RPPR=31.2394;RPR=0;RUN=1;SAF=102;SAP=224.5;SAR=0;SRF=13;SRP=31.2394;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:48:0,2,5,4,36:0:0:2,5,4,36:80,190,158,1416:-132.041,-125.45,-124.848,-116.46,-109.87,-114.955,-119.039,-112.448,-103.458,-117.834,-15.5781,-8.98493,0,-2.57134,-4.74099 1|1:83:6,5,20,0,50:6:233:5,20,0,50:196,778,0,1987:-206.569,-192.257,-209.896,-144.439,-147.465,-157.562,-208.375,-211.401,-163.583,-227.519,-44.8054,-47.831,0,-63.951,-48.8995 0|1:13:7,1,0,0,5:7:271:1,0,0,5:39,0,0,203:-14.6484,-13.5524,-35.5001,-16.7556,-35.8011,-39.0066,-16.7556,-35.8011,-39.0066,-39.0066,0,-19.0509,-22.2571,-22.2571,-20.752 1|1:14:0,1,2,0,11:0:0:1,2,0,11:38,77,0,426:-41.3211,-38.205,-37.904,-34.9989,-31.883,-34.3968,-41.3211,-38.205,-34.9989,-41.3211,-6.3257,-3.21084,0,-6.3257,-3.01437 dDocent_Contig_11235 25 . C T 479.251 . AB=0.2;ABP=14.7363;AC=4;AF=0.5;AN=8;AO=3;CIGAR=1X3M;DP=48;DPB=48;DPRA=0;EPP=9.52472;EPPR=63.8115;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=120;QR=1110;RO=28;RPL=0;RPP=9.52472;RPPR=63.8115;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:16:8,8,0:8:321:8,0:319,0:-24.2615,0,-24.4405,-26.6698,-26.8488,-53.119 0|1:15:11,1,3:11:441:1,3:35,120:-6.61119,-7.08721,-43.121,0,-33.537,-35.4774 0|1:10:6,4,0:6:231:4,0:159,0:-11.682,0,-18.1447,-13.4882,-19.3488,-32.4449 0|1:7:3,4,0:3:117:4,0:161,0:-12.7683,0,-8.8027,-13.6714,-10.0068,-23.2832 dDocent_Contig_11236 38 . C G 34.6795 . AB=0.214286;ABP=12.937;AC=2;AF=0.25;AN=8;AO=3;CIGAR=1X;DP=43;DPB=43;DPRA=0.482759;EPP=9.52472;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.333333;PAIREDR=0.925;PAO=0;PQA=0;PQR=0;PRO=0;QA=116;QR=1620;RO=40;RPL=0;RPP=9.52472;RPPR=89.8692;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:1:1,0:1:38:0:0:0,-0.30103,-3.79727 0/1:6:5,1:5:205:1:37:-1.89165,0,-17.0288 0/0:28:28,0:28:1134:0:0:0,-8.42884,-102.34 0/1:8:6,2:6:243:2:79:-5.089,0,-19.8397 dDocent_Contig_11237 25 . G C 1037.49 . 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AB=0.619048;ABP=5.59539;AC=1;AF=0.125;AN=8;AO=13;CIGAR=1X;DP=46;DPB=46;DPRA=2.52;EPP=31.2394;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=496;QR=1286;RO=33;RPL=0;RPP=31.2394;RPPR=74.6689;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5,0:5:204:0:0:0,-1.50515,-18.744 0/1:21:8,13:8:324:13:496:-38.6495,0,-23.2078 0/0:15:15,0:15:559:0:0:0,-4.51545,-50.6356 0/0:5:5,0:5:199:0:0:0,-1.50515,-18.2881 dDocent_Contig_11239 97 . G T 121.465 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=4;CIGAR=2X;DP=4;DPB=22.5;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=7.37776;PAIRED=1;PAIREDR=0;PAO=11;PQA=374;PQR=334;PRO=10;QA=135;QR=0;RO=0;RPL=4;RPP=11.6962;RPPR=0;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:4:0,4:0:0:4:135:-12.1462,-1.20412,0 .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. dDocent_Contig_11240 128 . A G 148.825 . AB=0.25;ABP=11.6962;AC=4;AF=0.666667;AN=6;AO=6;CIGAR=1X;DP=18;DPB=18;DPRA=0;EPP=16.0391;EPPR=29.068;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=244;QR=490;RO=12;RPL=6;RPP=16.0391;RPPR=29.068;RPR=0;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=29.068;SRR=12;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:81:-7.68573,-0.60206,0 ./.:.:.:.:.:.:.:. 0/1:10:7,3:7:285:3:122:-8.36219,0,-23.0141 0/1:6:5,1:5:205:1:41:-2.28839,0,-17.0288 dDocent_Contig_11241 107 . N G 462.525 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=13;CIGAR=1X1M;DP=16;DPB=16;DPRA=1.44444;EPP=31.2394;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=4;NUMALT=2;ODDS=0;PAIRED=0.769231;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=390;QR=0;RO=0;RPL=0;RPP=31.2394;RPPR=0;RPR=13;RUN=1;SAF=0;SAP=31.2394;SAR=13;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:5:0,0,5:0:0:0,5:0,152:-13.9811,-13.9811,-13.9811,-1.50515,-1.50515,0 1|1:3:0,3,0:0:0:3,0:104,0:-9.70309,-0.90309,0,-9.70309,-0.90309,-9.70309 1|1:2:0,0,2:0:0:0,2:0,46:-4.36984,-4.36984,-4.36984,-0.60206,-0.60206,0 1|1:6:0,0,6:0:0:0,6:0,192:-17.5955,-17.5955,-17.5955,-1.80618,-1.80618,0 dDocent_Contig_11242 36 . C T 258.793 . AB=0.366667;ABP=7.64277;AC=3;AF=0.375;AN=8;AO=11;CIGAR=1X;DP=45;DPB=45;DPRA=0.666667;EPP=26.8965;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=435;QR=1359;RO=34;RPL=0;RPP=26.8965;RPPR=76.8404;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:15,8:15:597:8:316:-21.8796,0,-47.1433 0/0:15:15,0:15:599:0:0:0,-4.51545,-54.2464 0/1:4:2,2:2:82:2:78:-6.19918,0,-6.57556 0/1:3:2,1:2:81:1:41:-3.19148,0,-6.78264 dDocent_Contig_11243 7 . T A 1088.52 . AB=0.119403;ABP=87.3088;AC=0;AF=0;AN=8;AO=8;CIGAR=1M1X4M1X3M1X4M1X2M1X1M;DP=107;DPB=94.85;DPRA=0;EPP=20.3821;EPPR=50.7827;GTI=0;LEN=1;MEANALT=4.33333;MQM=57.125;MQMR=60;NS=4;NUMALT=7;ODDS=0;PAIRED=0.75;PAIREDR=0.681818;PAO=0;PQA=0;PQR=0;PRO=0;QA=293;QR=859;RO=22;RPL=0;RPP=20.3821;RPPR=50.7827;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:40:8,0,5,12,13,0,0,2:8:313:0,5,12,13,0,0,2:0,189,469,514,0,0,22:-47.5362,-49.9445,-75.6887,-35.7516,-61.4971,-59.9919,-16.5811,-42.3279,-28.1383,-38.7156,-7.61226,-33.37,-19.1749,0,-29.4566,-49.9445,-75.6887,-61.4971,-42.3279,-33.37,-75.6887,-49.9445,-75.6887,-61.4971,-42.3279,-33.37,-75.6887,-75.6887,-49.0945,-74.8354,-60.6461,-41.4818,-32.5228,-74.8354,-74.8354,-74.2334 0|0:24:0,2,7,0,0,6,8,0:0:0:2,7,0,0,6,8,0:70,245,0,0,165,314,0:-43.9473,-38.2874,-37.6854,-25.4127,-19.7523,-23.3054,-43.9473,-38.2874,-25.4127,-43.9473,-43.9473,-38.2874,-25.4127,-43.9473,-43.9473,-32.0133,-26.356,-13.4956,-32.0133,-32.0133,-30.2071,-18.5545,-12.8899,0,-18.5545,-18.5545,-6.6245,-16.1463,-43.9473,-38.2874,-25.4127,-43.9473,-43.9473,-32.0133,-18.5545,-43.9473 0|0:30:8,4,7,0,6,0,5,0:8:315:4,7,0,6,0,5,0:156,251,0,237,0,189,0:-16.6403,-6.21954,-30.9401,0,-13.0947,-23.8122,-19.0485,-32.1442,-25.9194,-44.9704,-0.761012,-13.8587,-7.63868,-26.6856,-24.8794,-19.0485,-32.1442,-25.9194,-44.9704,-26.6856,-44.9704,-3.55583,-16.6534,-10.4321,-29.4804,-11.1954,-29.4804,-27.9752,-19.0485,-32.1442,-25.9194,-44.9704,-26.6856,-44.9704,-29.4804,-44.9704 0|0:13:6,2,1,3,1,0,0,0:6:231:2,1,3,1,0,0,0:67,32,120,40,0,0,0:-8.10719,-4.49805,-22.8687,-7.39994,-20.9559,-26.0725,0,-13.578,-16.4809,-18.0937,-7.04478,-20.6033,-23.5056,-16.1279,-25.7206,-9.91337,-23.4708,-26.3735,-18.9968,-26.0216,-28.8901,-9.91337,-23.4708,-26.3735,-18.9968,-26.0216,-28.8901,-28.8901,-9.91337,-23.4708,-26.3735,-18.9968,-26.0216,-28.8901,-28.8901,-28.8901 dDocent_Contig_11244 38 . A C 532.994 . AB=0.228571;ABP=70.2019;AC=2;AF=0.25;AN=8;AO=26;CIGAR=1X;DP=216;DPB=216;DPRA=9.95238;EPP=59.4686;EPPR=415.59;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1049;QR=7588;RO=190;RPL=0;RPP=59.4686;RPPR=415.59;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=190;SRP=415.59;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:86:64,22:64:2568:22:891:-54.607,0,-205.357 0/0:104:102,2:102:4072:2:77:0,-23.9983,-359.14 0/1:19:17,2:17:666:2:81:-1.96616,0,-54.5458 0/0:7:7,0:7:282:0:0:0,-2.10721,-25.753 dDocent_Contig_11245 7 . T C 953.872 . AB=0.59322;ABP=7.46366;AC=4;AF=0.5;AN=8;AO=35;CIGAR=1X1M1X;DP=59;DPB=59;DPRA=0;EPP=79.0118;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=57.1714;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.628571;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1328;QR=914;RO=24;RPL=0;RPP=79.0118;RPPR=55.1256;RPR=35;RUN=1;SAF=35;SAP=79.0118;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:17:2,15:2:78:15:566:-45.7612,0,-2.28596 0|1:24:13,11:13:490:11:423:-31.1856,0,-37.2186 0|1:4:2,2:2:78:2:73:-5.71923,0,-6.19935 0|1:14:7,7:7:268:7:266:-20.0662,0,-20.2695 dDocent_Contig_11246 17 . C T 160.076 . AB=0.178571;ABP=53.2644;AC=3;AF=0.375;AN=8;AO=10;CIGAR=1X;DP=60;DPB=60;DPRA=4.66667;EPP=24.725;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.7;PAIREDR=0.76;PAO=0;PQA=0;PQR=0;PRO=0;QA=399;QR=2008;RO=50;RPL=0;RPP=24.725;RPPR=111.584;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:33:26,7:26:1047:7:284:-15.9998,0,-84.5848 0/1:10:9,1:9:360:1:38:-0.786969,0,-29.7495 0/1:13:11,2:11:444:2:77:-3.39481,0,-36.4017 0/0:4:4,0:4:157:0:0:0,-1.20412,-14.5064 dDocent_Contig_11247 8 . T C 79.0074 . AB=0.129032;ABP=77.1206;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X;DP=208;DPB=208;DPRA=1.03922;EPP=22.5536;EPPR=435.133;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.1055;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.974874;PAO=0;PQA=0;PQR=0;PRO=0;QA=349;QR=7680;RO=199;RPL=0;RPP=22.5536;RPPR=435.133;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=199;SRP=435.133;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:44:43,1:43:1652:1:39:0,-9.34875,-143.169 0/1:62:54,8:54:2093:8:310:-9.59971,0,-169.921 0/0:64:64,0:64:2469:0:0:0,-19.2659,-221.466 0/0:38:38,0:38:1466:0:0:0,-11.4391,-132.217 dDocent_Contig_11248 46 . T A 280.098 . AB=0.209877;ABP=62.2298;AC=4;AF=0.5;AN=8;AO=17;CIGAR=1X;DP=81;DPB=81;DPRA=0;EPP=39.9253;EPPR=141.985;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.984375;PAO=0;PQA=0;PQR=0;PRO=0;QA=648;QR=2535;RO=64;RPL=0;RPP=39.9253;RPPR=141.985;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=64;SRP=141.985;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:32:28,4:28:1100:4:161:-5.24231,0,-89.6525 0/1:9:6,3:6:244:3:120:-8.47804,0,-19.6296 0/1:23:18,5:18:703:5:167:-8.42533,0,-56.6728 0/1:17:12,5:12:488:5:200:-13.262,0,-39.1538 dDocent_Contig_11249 16 . T C 1675.85 . AB=0.793651;ABP=50.1967;AC=5;AF=0.625;AN=8;AO=53;CIGAR=1X;DP=66;DPB=66;DPRA=0;EPP=118.098;EPPR=31.2394;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2117;QR=525;RO=13;RPL=0;RPP=118.098;RPPR=31.2394;RPR=53;RUN=1;SAF=53;SAP=118.098;SAR=0;SRF=13;SRP=31.2394;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:37:5,32:5:200:32:1261:-102.619,0,-7.24143 0/1:21:7,14:7:284:14:571:-45.4103,0,-19.6122 0/1:5:1,4:1:41:4:163:-13.5533,0,-2.58942 1/1:3:0,3:0:0:3:122:-11.3725,-0.90309,0 dDocent_Contig_11250 7 . T G 1003.07 . AB=0.4375;ABP=6.81038;AC=4;AF=0.5;AN=8;AO=49;CIGAR=1X;DP=112;DPB=112;DPRA=0;EPP=109.412;EPPR=139.813;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.265306;PAIREDR=0.52381;PAO=0;PQA=0;PQR=0;PRO=0;QA=1558;QR=2391;RO=63;RPL=0;RPP=109.412;RPPR=139.813;RPR=49;RUN=1;SAF=49;SAP=109.412;SAR=0;SRF=63;SRP=139.813;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:14,17:14:542:17:566:-41.9123,0,-39.794 0/1:38:24,14:24:904:14:388:-23.7455,0,-70.2285 0/1:27:16,11:16:595:11:389:-27.2159,0,-45.7516 0/1:16:9,7:9:350:7:215:-14.8316,0,-27.0449 dDocent_Contig_11251 10 . A C 771.908 . AB=0.444444;ABP=4.69922;AC=4;AF=0.5;AN=8;AO=28;CIGAR=1X4M;DP=63;DPB=63;DPRA=0;EPP=55.4358;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.0714286;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1132;QR=1303;RO=33;RPL=0;RPP=63.8115;RPPR=74.6689;RPR=28;RUN=1;SAF=27;SAP=55.4358;SAR=1;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:20:7,2,11:7:266:2,11:82,449:-34.9382,-30.2769,-51.4765,0,-15.0146,-18.478 0|1:14:7,0,7:7:276:0,7:0,284:-21.719,-23.8262,-46.5279,0,-23.1012,-20.994 0|1:21:15,0,6:15:600:0,6:0,244:-16.0172,-20.5326,-69.9522,0,-49.8239,-48.0177 0|1:8:4,0,4:4:161:0,4:0,155:-11.9144,-13.1185,-26.3951,0,-13.6712,-12.467 dDocent_Contig_11253 122 . C A 297.614 . AB=0.125;ABP=12.7819;AC=3;AF=0.375;AN=8;AO=12;CIGAR=1X;DP=39;DPB=39;DPRA=6.16667;EPP=29.068;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=412;QR=929;RO=27;RPL=0;RPP=29.068;RPPR=61.6401;RPR=12;RUN=1;SAF=0;SAP=29.068;SAR=12;SRF=0;SRP=61.6401;SRR=27;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:9:0,9:0:0:9:320:-29.1424,-2.70927,0 0/0:2:2,0:2:70:0:0:0,-0.60206,-6.6474 0/0:20:18,2:18:614:2:56:0,-0.702279,-50.2619 0/1:8:7,1:7:245:1:36:-1.19004,0,-19.9829 dDocent_Contig_11254 13 . T C 1145.47 . AB=0.385965;ABP=15.8868;AC=3;AF=0.375;AN=8;AO=44;CIGAR=3M1X2M1X2M1X;DP=114;DPB=122;DPRA=0;EPP=98.5551;EPPR=81.1833;GTI=0;LEN=1;MEANALT=3;MQM=46.9545;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=0.840909;PAIREDR=0.972222;PAO=0;PQA=0;PQR=0;PRO=0;QA=1717;QR=1366;RO=36;RPL=0;RPP=98.5551;RPPR=81.1833;RPR=44;RUN=1;SAF=44;SAP=98.5551;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:26:13,0,6,6:13:500:0,6,6:0,236,235:-14.2358,-18.1492,-59.2084,-0.0544806,-41.1183,-39.3121,0,-41.0644,-22.9758,-39.2582 0|1:40:10,5,15,8:10:374:5,15,8:181,587,303:-37.0868,-26.129,-55.2576,0,-16.6678,-26.1153,-16.4002,-33.0693,-6.94168,-44.6285 1|0:30:5,3,15,7:5:190:3,15,7:120,582,258:-47.945,-39.5604,-54.2415,-5.00309,-10.695,-16.0711,-28.8535,-34.5473,0,-42.3296 0|1:18:8,0,8,2:8:302:0,8,2:0,312,82:-22.5911,-24.9993,-49.7463,0,-24.7254,-22.3172,-18.2254,-42.9748,-17.9508,-42.3727 dDocent_Contig_11255 133 . A G 35.8197 . AB=0.25;ABP=11.6962;AC=2;AF=0.25;AN=8;AO=4;CIGAR=1X;DP=22;DPB=22;DPRA=2.66667;EPP=11.6962;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=123;QR=626;RO=18;RPL=0;RPP=11.6962;RPPR=42.0968;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=42.0968;SRR=18;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:8,3:8:271:3:87:-4.80609,0,-21.4054 0/1:5:4,1:4:135:1:36:-2.09312,0,-10.9741 0/0:5:5,0:5:192:0:0:0,-1.50515,-17.6489 0/0:1:1,0:1:28:0:0:0,-0.30103,-2.79973 dDocent_Contig_11256 7 . T C 363.954 . AB=0.19802;ABP=83.0108;AC=2;AF=0.25;AN=8;AO=21;CIGAR=1X;DP=143;DPB=143;DPRA=1.83333;EPP=48.6112;EPPR=267.93;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.6557;NS=4;NUMALT=1;ODDS=0;PAIRED=0.571429;PAIREDR=0.827869;PAO=0;PQA=0;PQR=0;PRO=0;QA=811;QR=4657;RO=122;RPL=0;RPP=48.6112;RPPR=267.93;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=122;SRP=267.93;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:55:40,15:40:1541:15:577:-35.7156,0,-122.297 0/1:46:41,5:41:1542:5:195:-4.07682,0,-125.191 0/0:20:19,1:19:739:1:39:0,-2.12404,-62.9439 0/0:22:22,0:22:835:0:0:0,-6.62266,-75.4724 dDocent_Contig_11257 8 . T C 2270.97 . AB=0.43299;ABP=10.5769;AC=4;AF=0.5;AN=8;AO=84;CIGAR=1X;DP=194;DPB=194;DPRA=0;EPP=185.414;EPPR=239.701;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.904762;PAIREDR=0.944954;PAO=0;PQA=0;PQR=0;PRO=0;QA=3241;QR=4194;RO=109;RPL=0;RPP=185.414;RPPR=239.701;RPR=84;RUN=1;SAF=84;SAP=185.414;SAR=0;SRF=109;SRP=239.701;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:70:42,27:42:1620:27:1051:-73.7359,0,-124.904 0/1:49:32,17:32:1228:17:650:-44.0825,0,-96.0571 0/1:44:20,24:20:767:24:931:-70.861,0,-56.1127 0/1:31:15,16:15:579:16:609:-45.8152,0,-43.1204 dDocent_Contig_11259 7 . T A 355.265 . AB=0.590909;ABP=4.58955;AC=2;AF=0.25;AN=8;AO=13;CIGAR=1X1M1X;DP=35;DPB=35;DPRA=1.69231;EPP=31.2394;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=497;QR=841;RO=22;RPL=0;RPP=31.2394;RPPR=50.7827;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:7:7,0:7:267:0:0:0,-2.10721,-24.3932 0|0:6:6,0:6:231:0:0:0,-1.80618,-21.1579 0|1:6:5,1:5:188:1:39:-2.09038,0,-15.4773 0|1:16:4,12:4:155:12:458:-36.7537,0,-9.50896 dDocent_Contig_11260 60 . G A 63.6275 . AB=0.272727;ABP=7.94546;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=33;DPB=33;DPRA=1.5;EPP=9.52472;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.866667;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=1134;RO=30;RPL=3;RPP=9.52472;RPPR=68.1545;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:13:13,0:13:504:0:0:0,-3.91339,-45.7089 0/0:1:1,0:1:39:0:0:0,-0.30103,-3.89656 0/1:11:8,3:8:303:3:122:-8.06116,0,-24.3173 0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2607 dDocent_Contig_11262 11 . G A 679.186 . AB=0.304348;ABP=33.5997;AC=4;AF=0.5;AN=8;AO=28;CIGAR=1X;DP=92;DPB=92;DPRA=0;EPP=63.8115;EPPR=141.985;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.821429;PAIREDR=0.921875;PAO=0;PQA=0;PQR=0;PRO=0;QA=1128;QR=2561;RO=64;RPL=0;RPP=63.8115;RPPR=141.985;RPR=28;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=64;SRP=141.985;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:21,9:21:845:9:361:-23.8221,0,-67.3319 0/1:36:24,12:24:963:12:484:-33.0734,0,-76.1327 0/1:18:14,4:14:560:4:161:-9.45673,0,-45.3223 0/1:8:5,3:5:193:3:122:-8.96425,0,-15.3302 dDocent_Contig_11263 198 . A T 270.655 . AB=0.5;ABP=3.0103;AC=3;AF=0.375;AN=8;AO=11;CIGAR=1X;DP=28;DPB=28;DPRA=1.22222;EPP=26.8965;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=422;QR=659;RO=17;RPL=11;RPP=26.8965;RPPR=39.9253;RPR=0;RUN=1;SAF=0;SAP=26.8965;SAR=11;SRF=0;SRP=39.9253;SRR=17;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:5:3,2:3:115:2:72:-5.33076,0,-9.21974 0/1:11:6,5:6:233:5:194:-14.5215,0,-18.0288 0/0:6:6,0:6:234:0:0:0,-1.80618,-21.4311 0/1:6:2,4:2:77:4:156:-12.6111,0,-5.50296 dDocent_Contig_11265 13 . C T 423.914 . AB=0.280702;ABP=26.8203;AC=5;AF=0.625;AN=8;AO=16;CIGAR=1X4M;DP=57;DPB=57;DPRA=0;EPP=37.7539;EPPR=13.8677;GTI=0;LEN=1;MEANALT=2;MQM=58.875;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.875;PAIREDR=0.75;PAO=0;PQA=0;PQR=0;PRO=0;QA=632;QR=772;RO=20;RPL=0;RPP=37.7539;RPPR=46.4397;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=15;SRP=13.8677;SRR=5;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:22:12,4,6:12:450:4,6:163,238:-16.1154,-15.0117,-50.6496,0,-32.2563,-35.206 0|1:21:7,11,3:7:281:11,3:447,118:-7.43425,-2.0575,-21.9119,0,-15.7453,-22.364 0|1:6:1,3,2:1:41:3,2:120,81:-6.50395,-5.46762,-7.95026,0,-2.17749,-2.86189 1|1:8:0,3,5:0:0:3,5:120,195:-17.829,-16.4152,-15.5122,-1.61607,0,-0.110916 dDocent_Contig_11266 7 . T A 1342.15 . AB=0.479167;ABP=3.37221;AC=6;AF=0.75;AN=8;AO=46;CIGAR=1X5M;DP=96;DPB=96;DPRA=0;EPP=102.898;EPPR=68.1545;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=4;NUMALT=5;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1758;QR=1162;RO=30;RPL=0;RPP=102.898;RPPR=68.1545;RPR=46;RUN=1;SAF=46;SAP=102.898;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:23:2,0,3,4,0,14:2:78:0,3,4,0,14:0,116,152,0,534:-49.2535,-49.8555,-56.268,-40.3265,-46.7391,-45.836,-37.3903,-43.8029,-34.2739,-42.5987,-49.8555,-56.268,-46.7391,-43.8029,-56.268,-6.04882,-12.4622,-2.93278,0,-12.4622,-8.24773 0|1:30:9,0,0,2,0,19:9:346:0,0,2,0,19:0,0,77,0,722:-56.497,-59.2062,-87.6101,-59.2062,-87.6101,-87.6101,-52.8834,-81.2874,-81.2874,-80.6854,-59.2062,-87.6101,-87.6101,-81.2874,-87.6101,0,-28.4022,-28.4022,-22.0797,-28.4022,-22.6826 0|1:32:17,3,0,3,0,9:17:662:3,0,3,0,9:113,0,108,0,350:-23.6583,-19.5212,-73.0313,-28.7759,-73.9344,-83.1892,-19.9697,-65.1262,-74.3805,-73.4774,-28.7759,-73.9344,-83.1892,-74.3805,-83.1892,0,-45.1697,-54.4242,-45.6166,-54.4242,-51.715 1|1:11:2,2,0,1,2,4:2:76:2,0,1,2,4:79,0,39,70,152:-12.1354,-6.23572,-11.8677,-12.7375,-12.4698,-18.9704,-9.53006,-9.26199,-15.7633,-15.4623,-7.05049,-6.78189,-13.2817,-10.0752,-12.6797,-0.270282,0,-6.50395,-3.29592,-0.819865,-5.29983 dDocent_Contig_11267 34 . G A 87.6948 . AB=0.227273;ABP=17.2236;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=31;DPB=31;DPRA=1.22222;EPP=13.8677;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.4;PAIREDR=0.692308;PAO=0;PQA=0;PQR=0;PRO=0;QA=201;QR=1039;RO=26;RPL=0;RPP=13.8677;RPPR=59.4686;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:9:9,0:9:359:0:0:0,-2.70927,-32.6733 0/1:17:13,4:13:517:4:161:-9.75739,0,-41.7549 0/1:5:4,1:4:163:1:40:-2.49053,0,-13.5533 ./.:.:.:.:.:.:.:. dDocent_Contig_11268 24 . G T 59.3627 . AB=0.238095;ABP=15.5221;AC=2;AF=0.25;AN=8;AO=5;CIGAR=2X;DP=76;DPB=76;DPRA=0.381818;EPP=13.8677;EPPR=157.185;GTI=0;LEN=1;MEANALT=1;MQM=31;MQMR=57.0141;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.591549;PAO=0;PQA=0;PQR=0;PRO=0;QA=197;QR=2806;RO=71;RPL=0;RPP=13.8677;RPPR=157.185;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=71;SRP=157.185;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:35:35,0:35:1366:0:0:0,-10.536,-123.197 0|0:20:20,0:20:805:0:0:0,-6.0206,-69.5924 0|1:9:8,1:8:314:1:40:-0.339272,0,-21.2459 0|1:12:8,4:8:321:4:157:-7.63287,0,-25.2737 dDocent_Contig_11269 70 . T G 184.956 . AB=0.344828;ABP=9.07545;AC=2;AF=0.25;AN=8;AO=11;CIGAR=1X;DP=72;DPB=72;DPRA=0.809524;EPP=26.8965;EPPR=135.47;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=368;QR=2110;RO=61;RPL=11;RPP=26.8965;RPPR=135.47;RPR=0;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=61;SRP=135.47;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:21:21,0:21:731:0:0:0,-6.32163,-66.1131 0/1:21:15,6:15:515:6:203:-12.2805,0,-40.355 0/0:22:21,1:21:726:1:35:0,-3.12403,-62.1625 0/1:8:4,4:4:138:4:130:-9.61306,0,-10.3522 dDocent_Contig_11270 67 . A T 234.47 . AB=0.36;ABP=7.26639;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X;DP=69;DPB=69;DPRA=1.70455;EPP=22.5536;EPPR=133.299;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=359;QR=2347;RO=60;RPL=9;RPP=22.5536;RPPR=133.299;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:38:38,0:38:1500:0:0:0,-11.4391,-135.249 0/1:25:16,9:16:627:9:359:-25.1456,0,-49.2343 0/0:4:4,0:4:155:0:0:0,-1.20412,-14.3237 0/0:2:2,0:2:65:0:0:0,-0.60206,-6.16974 dDocent_Contig_11272 10 . A G 2557.47 . AB=0.383117;ABP=21.2845;AC=4;AF=0.5;AN=8;AO=59;CIGAR=1X2M1X;DP=154;DPB=154;DPRA=0;EPP=131.127;EPPR=52.9542;GTI=0;LEN=1;MEANALT=2.25;MQM=34.6102;MQMR=60;NS=4;NUMALT=2;ODDS=1.38778e-17;PAIRED=0;PAIREDR=0.73913;PAO=0;PQA=0;PQR=0;PRO=0;QA=2268;QR=887;RO=23;RPL=0;RPP=131.127;RPPR=52.9542;RPR=59;RUN=1;SAF=59;SAP=131.127;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:51:9,27,15:9:349:27,15:1037,519:-78.9891,-9.75581,-30.3278,-43.2036,0,-67.3767 1|0:66:3,15,47:3:117:15,47:584,1404:-129.846,-90.5204,-95.6297,-30.5768,0,-26.0566 1|0:14:0,8,6:0:0:8,6:301,170:-33.3463,-12.168,-9.75978,-21.4636,0,-19.6574 0|1:23:11,9,3:11:421:9,3:346,107:-20.964,0,-31.8792,-16.2066,-26.5304,-49.8798 dDocent_Contig_11273 110 . C T 350.683 . AB=0.177215;ABP=217.491;AC=3;AF=0.375;AN=8;AO=48;CIGAR=1X;DP=342;DPB=342;DPRA=0;EPP=107.241;EPPR=628.424;GTI=0;LEN=1;MEANALT=1.5;MQM=35.9375;MQMR=34.3767;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.123288;PAO=0;PQA=0;PQR=0;PRO=0;QA=1567;QR=9674;RO=292;RPL=0;RPP=107.241;RPPR=637.08;RPR=48;RUN=1;SAF=0;SAP=107.241;SAR=48;SRF=1;SRP=628.424;SRR=291;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:105:98,6:98:3206:6:195:0,-15.2982,-221.461 0/1:130:105,24:105:3493:24:752:-21.4703,0,-223.294 0/1:71:63,8:63:2115:8:278:-2.68961,0,-134.419 0/1:36:26,10:26:860:10:342:-16.2847,0,-61.0895 dDocent_Contig_11274 18 . A G 8320.78 . AB=0.106667;ABP=103.796;AC=0;AF=0;AN=8;AO=12;CIGAR=1X1M1X;DP=315;DPB=313.333;DPRA=0;EPP=5.9056;EPPR=61.6401;GTI=0;LEN=1;MEANALT=4.33333;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.5;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=421;QR=1060;RO=27;RPL=0;RPP=29.068;RPPR=61.6401;RPR=12;RUN=1;SAF=8;SAP=5.9056;SAR=4;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:105:2,3,93:2:76:3,93:117,3484:-305.237,-296.221,-301.55,-21.7644,-18.3769,0 0|0:106:15,0,91:15:592:0,91:0,3471:-280.575,-285.091,-333.799,0,-49.1011,-21.7074 0|0:75:10,8,52:10:392:8,52:265,1982:-159.095,-140.68,-170.509,0,-10.8421,-16.5988 0|0:29:0,1,26:0:0:1,26:39,1008:-90.5688,-87.3628,-87.0618,-7.82678,-4.61896,0 dDocent_Contig_11275 53 . A G 58.3378 . AB=0.153846;ABP=30.0702;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=66;DPB=66;DPRA=1.95;EPP=11.6962;EPPR=137.642;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=163;QR=2403;RO=62;RPL=4;RPP=11.6962;RPPR=137.642;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:22,4:22:862:4:163:-7.23165,0,-70.0624 0/0:29:29,0:29:1135:0:0:0,-8.72987,-102.432 0/0:7:7,0:7:265:0:0:0,-2.10721,-24.2075 0/0:4:4,0:4:141:0:0:0,-1.20412,-13.0337 dDocent_Contig_11276 33 . G A 333.243 . AB=0.5;ABP=3.0103;AC=2;AF=0.25;AN=8;AO=12;CIGAR=1X;DP=46;DPB=46;DPRA=1.09091;EPP=29.068;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=480;QR=1351;RO=34;RPL=0;RPP=29.068;RPPR=76.8404;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:10:10,0:10:399:0:0:0,-3.0103,-36.2688 0/0:12:12,0:12:477:0:0:0,-3.61236,-43.2759 0/1:21:10,11:10:394:11:442:-33.8144,0,-29.4943 0/1:3:2,1:2:81:1:38:-2.89418,0,-6.78264 dDocent_Contig_11278 7 . T C 575.799 . AB=0.328947;ABP=22.325;AC=4;AF=0.5;AN=8;AO=25;CIGAR=1X;DP=76;DPB=76;DPRA=0;EPP=57.2971;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.980392;PAO=0;PQA=0;PQR=0;PRO=0;QA=960;QR=1950;RO=51;RPL=0;RPP=57.2971;RPPR=113.755;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:20,5:20:759:5:195:-10.3984,0,-61.1121 0/1:20:10,10:10:382:10:390:-29.4381,0,-28.7124 0/1:19:14,5:14:546:5:181:-10.9208,0,-43.7668 0/1:12:7,5:7:263:5:194:-14.2205,0,-20.4148 dDocent_Contig_11280 76 . C T 144.841 . AB=0.416667;ABP=3.73412;AC=3;AF=0.5;AN=6;AO=6;CIGAR=1M1D3M1X;DP=23;DPB=22;DPRA=0.65;EPP=16.0391;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=210;QR=651;RO=17;RPL=6;RPP=16.0391;RPPR=39.9253;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:10:10,0:10:383:0:0:0,-3.0103,-34.8256 0|1:12:7,5:7:268:5:171:-12.1097,0,-20.8715 1|1:1:0,1:0:0:1:39:-3.89656,-0.30103,0 .:.:.:.:.:.:.:. dDocent_Contig_11281 48 . C T 731.431 . AB=0.341463;ABP=20.9117;AC=3;AF=0.375;AN=8;AO=28;CIGAR=1X;DP=85;DPB=85;DPRA=9.11111;EPP=55.4358;EPPR=126.784;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1134;QR=2256;RO=57;RPL=1;RPP=55.4358;RPPR=126.784;RPR=27;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:39:34,5:34:1356:5:204:-7.00386,0,-110.558 0/1:25:4,21:4:162:21:851:-69.3757,0,-7.441 0/1:18:16,2:16:619:2:79:-2.07909,0,-50.6154 0/0:3:3,0:3:119:0:0:0,-0.90309,-11.095 dDocent_Contig_11282 188 . T C 173.233 . AB=0.583333;ABP=3.73412;AC=2;AF=0.25;AN=8;AO=10;CIGAR=1X;DP=54;DPB=54;DPRA=0.952381;EPP=24.725;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=351;QR=1739;RO=44;RPL=10;RPP=24.725;RPPR=98.5551;RPR=0;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=98.5551;SRR=44;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:28:25,3:25:984:3:89:0,-0.129416,-80.5583 0/0:14:14,0:14:565:0:0:0,-4.21442,-51.1914 0/1:3:1,2:1:40:2:82:-6.87659,0,-3.09259 0/1:9:4,5:4:150:5:180:-13.8351,0,-11.1534 dDocent_Contig_11283 24 . C G 174.764 . AB=0.137615;ABP=127.342;AC=3;AF=0.375;AN=8;AO=18;CIGAR=1X;DP=154;DPB=154;DPRA=0;EPP=42.0968;EPPR=298.331;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.985294;PAO=0;PQA=0;PQR=0;PRO=0;QA=727;QR=5498;RO=136;RPL=0;RPP=42.0968;RPPR=298.331;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=136;SRP=298.331;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:52:45,7:45:1827:7:281:-10.0075,0,-148.978 0/0:45:42,3:42:1698:3:121:0,-2.26615,-141.757 0/1:38:33,5:33:1348:5:203:-7.21392,0,-110.132 0/1:19:16,3:16:625:3:122:-5.65292,0,-50.8622 dDocent_Contig_11284 9 . T A 2468.6 . AB=0.401786;ABP=12.3942;AC=6;AF=0.75;AN=8;AO=45;CIGAR=1X3M;DP=112;DPB=112;DPRA=0;EPP=100.727;EPPR=42.0968;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.866667;PAIREDR=0.888889;PAO=0;PQA=0;PQR=0;PRO=0;QA=1724;QR=707;RO=18;RPL=0;RPP=100.727;RPPR=42.0968;RPR=45;RUN=1;SAF=45;SAP=100.727;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:49:4,25,20:4:154:25,20:974,767:-129.162,-50.3075,-55.4258,-67.416,0,-74.0386 1|1:30:0,16,14:0:0:16,14:614,531:-94.3132,-43.9161,-39.0996,-50.7781,0,-46.5637 0|1:14:6,3,5:6:238:3,5:116,192:-13.9531,-6.23031,-24.926,0,-10.0739,-18.0934 0|1:19:8,5,6:8:315:5,6:193,234:-16.8292,-3.38961,-27.8011,0,-10.0725,-24.113 dDocent_Contig_11285 8 . T A 300.476 . AB=0.48;ABP=3.09716;AC=3;AF=0.5;AN=6;AO=12;CIGAR=1X;DP=25;DPB=25;DPRA=0;EPP=29.068;EPPR=31.2394;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.333333;PAIREDR=0.923077;PAO=0;PQA=0;PQR=0;PRO=0;QA=466;QR=498;RO=13;RPL=0;RPP=29.068;RPPR=31.2394;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=13;SRP=31.2394;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:5,5:5:192:5:194:-14.8225,0,-14.6397 0/1:11:7,4:7:267:4:156:-11.106,0,-21.0809 0/1:4:1,3:1:39:3:116:-9.61358,0,-2.69244 ./.:.:.:.:.:.:.:. dDocent_Contig_11286 209 . N G 114.653 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=123;QR=0;RO=0;RPL=3;RPP=9.52472;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:123:-11.4648,-0.90309,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_11287 113 . G C 1276.34 . AB=0.69863;ABP=28.0269;AC=4;AF=0.5;AN=8;AO=51;CIGAR=1X;DP=73;DPB=73;DPRA=0;EPP=113.755;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.784314;PAIREDR=0.909091;PAO=0;PQA=0;PQR=0;PRO=0;QA=1730;QR=733;RO=22;RPL=0;RPP=113.755;RPPR=50.7827;RPR=51;RUN=1;SAF=0;SAP=113.755;SAR=51;SRF=0;SRP=50.7827;SRR=22;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:9,19:9:288:19:650:-50.3916,0,-17.8016 0/1:20:7,13:7:237:13:422:-32.2707,0,-15.6407 0/1:14:4,10:4:138:10:343:-26.9874,0,-8.54598 0/1:11:2,9:2:70:9:315:-25.3774,0,-3.33607 dDocent_Contig_11288 63 . C A 107.377 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=108;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0 1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_11289 113 . T C 30.2112 . AB=0.181818;ABP=22.3561;AC=2;AF=0.25;AN=8;AO=4;CIGAR=1X;DP=37;DPB=37;DPRA=1.46667;EPP=11.6962;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=138;QR=1170;RO=33;RPL=0;RPP=11.6962;RPPR=74.6689;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=74.6689;SRR=33;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:14,2:14:497:2:70:-1.83092,0,-40.2488 0/0:10:10,0:10:358:0:0:0,-3.0103,-32.5629 0/0:5:5,0:5:173:0:0:0,-1.50515,-15.9102 0/1:6:4,2:4:142:2:68:-4.6517,0,-11.3231 dDocent_Contig_11290 22 . A T 41.1591 . AB=0.115942;ABP=91.4113;AC=2;AF=0.25;AN=8;AO=15;CIGAR=1X;DP=306;DPB=306;DPRA=0;EPP=35.5824;EPPR=634.909;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=584;QR=11650;RO=291;RPL=0;RPP=35.5824;RPPR=634.909;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=291;SRP=634.909;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:126:122,4:122:4898:4:155:0,-23.6065,-426.382 0/0:111:108,3:108:4324:3:123:0,-21.9495,-377.641 0/1:55:49,6:49:1951:6:230:-4.50362,0,-159.233 0/1:14:12,2:12:477:2:76:-2.99912,0,-39.066 dDocent_Contig_11291 89 . A G 260.34 . AB=0.407407;ABP=5.02092;AC=3;AF=0.375;AN=8;AO=12;CIGAR=1X;DP=42;DPB=42;DPRA=0;EPP=29.068;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=463;QR=1155;RO=30;RPL=12;RPP=29.068;RPPR=68.1545;RPR=0;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:15:14,1:14:532:1:36:0,-0.917175,-44.6239 0/1:10:7,3:7:273:3:115:-7.71459,0,-21.9277 0/1:9:3,6:3:117:6:234:-18.7218,0,-8.20111 0/1:8:6,2:6:233:2:78:-4.99523,0,-18.9318 dDocent_Contig_11292 14 . T G 143.459 . AB=0.15;ABP=66.8516;AC=2;AF=0.25;AN=8;AO=9;CIGAR=1X;DP=93;DPB=93;DPRA=1.81818;EPP=22.5536;EPPR=185.414;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=369;QR=3355;RO=84;RPL=0;RPP=22.5536;RPPR=185.414;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=84;SRP=185.414;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:47:39,8:39:1577:8:328:-15.7419,0,-128.014 0/0:31:31,0:31:1237:0:0:0,-9.33193,-111.596 0/1:13:12,1:12:483:1:41:-0.181177,0,-39.908 0/0:2:2,0:2:58:0:0:0,-0.60206,-5.50482 dDocent_Contig_11293 30 . G A 549.435 . AB=0.916667;ABP=21.1059;AC=3;AF=0.375;AN=8;AO=16;CIGAR=1X;DP=32;DPB=32;DPRA=1.13333;EPP=37.7539;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=640;QR=648;RO=16;RPL=0;RPP=37.7539;RPPR=37.7539;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:10:10,0:10:407:0:0:0,-3.0103,-36.9906 0/0:5:5,0:5:201:0:0:0,-1.50515,-18.4705 0/1:12:1,11:1:40:11:439:-36.2516,0,-0.383319 1/1:5:0,5:0:0:5:201:-18.4705,-1.50515,0 dDocent_Contig_11295 69 . G C 66.5591 . AB=0.222222;ABP=15.074;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=48;DPB=48;DPRA=1.8;EPP=11.6962;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.886364;PAO=0;PQA=0;PQR=0;PRO=0;QA=149;QR=1616;RO=44;RPL=4;RPP=11.6962;RPPR=98.5551;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:22:22,0:22:816:0:0:0,-6.62266,-73.7605 0/1:18:14,4:14:503:4:149:-8.35459,0,-40.1775 0/0:2:2,0:2:74:0:0:0,-0.60206,-7.02588 0/0:6:6,0:6:223:0:0:0,-1.80618,-20.4272 dDocent_Contig_11296 32 . G C 48.7676 . AB=0.4;ABP=3.44459;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X;DP=20;DPB=20;DPRA=1;EPP=7.35324;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=730;RO=18;RPL=0;RPP=7.35324;RPPR=42.0968;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:5:3,2:3:123:2:82:-6.27453,0,-9.95964 0/0:6:6,0:6:243:0:0:0,-1.80618,-22.248 0/0:6:6,0:6:243:0:0:0,-1.80618,-22.2476 0/0:3:3,0:3:121:0:0:0,-0.90309,-11.2802 dDocent_Contig_11298 32 . C A 82.6081 . AB=0.6;ABP=3.44459;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=28;DPB=28;DPRA=0.652174;EPP=9.52472;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.72;PAO=0;PQA=0;PQR=0;PRO=0;QA=123;QR=1002;RO=25;RPL=0;RPP=9.52472;RPPR=57.2971;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:9:9,0:9:358:0:0:0,-2.70927,-32.5819 0/1:5:2,3:2:81:3:123:-9.95964,0,-6.18058 0/0:11:11,0:11:448:0:0:0,-3.31133,-40.676 0/0:3:3,0:3:115:0:0:0,-0.90309,-10.7247 dDocent_Contig_11299 137 . G A 40.2449 . AB=0.357143;ABP=5.49198;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=81;DPB=81;DPRA=0.626866;EPP=13.8677;EPPR=165.871;GTI=0;LEN=1;MEANALT=2;MQM=21.8;MQMR=58.16;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.866667;PAO=0;PQA=0;PQR=0;PRO=0;QA=175;QR=2605;RO=75;RPL=0;RPP=13.8677;RPPR=165.871;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=165.871;SRR=75;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:36:36,0:36:1257:0:0:0,-10.8371,-112.174 0/1:14:8,5:8:278:5:175:-5.72341,0,-21.1563 0/0:22:22,0:22:755:0:0:0,-6.62266,-67.1588 0/0:9:9,0:9:315:0:0:0,-2.70927,-28.1245 dDocent_Contig_11300 20 . C A 32.0996 . AB=0.16;ABP=28.1125;AC=2;AF=0.25;AN=8;AO=4;CIGAR=1X;DP=47;DPB=47;DPRA=1.13636;EPP=11.6962;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.75;PAIREDR=0.744186;PAO=0;PQA=0;PQR=0;PRO=0;QA=148;QR=1740;RO=43;RPL=0;RPP=11.6962;RPPR=96.3836;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:15:15,0:15:609:0:0:0,-4.51545,-55.1475 0/1:17:14,3:14:570:3:107:-4.85889,0,-46.5236 0/1:8:7,1:7:286:1:41:-1.68633,0,-23.7066 0/0:7:7,0:7:275:0:0:0,-2.10721,-25.1137 dDocent_Contig_11301 31 . A G 79.3795 . AB=0.25;ABP=11.6962;AC=2;AF=0.25;AN=8;AO=4;CIGAR=1X;DP=28;DPB=28;DPRA=1.33333;EPP=11.6962;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.25;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=157;QR=955;RO=24;RPL=0;RPP=11.6962;RPPR=55.1256;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:11,1:11:443:1:41:-0.482207,0,-36.6122 0/0:9:9,0:9:352:0:0:0,-2.70927,-32.0382 0/1:4:1,3:1:39:3:116:-9.61216,0,-2.69244 0/0:3:3,0:3:121:0:0:0,-0.90309,-11.2802 dDocent_Contig_11302 45 . C T 80.1019 . AB=0.0909091;ABP=50.9801;AC=4;AF=0.5;AN=8;AO=5;CIGAR=1X;DP=37;DPB=37;DPRA=5.83333;EPP=13.8677;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.6;PAIREDR=0.71875;PAO=0;PQA=0;PQR=0;PRO=0;QA=201;QR=1249;RO=32;RPL=0;RPP=13.8677;RPPR=72.4974;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:8,1:8:308:1:40:-1.28641,0,-25.3714 1/1:2:0,2:0:0:2:81:-7.68573,-0.60206,0 0/1:24:22,2:22:864:2:80:-0.367071,0,-70.8524 0/0:2:2,0:2:77:0:0:0,-0.60206,-7.30914 dDocent_Contig_11303 63 . G A 1399.9 . AB=0.201754;ABP=91.0883;AC=3;AF=0.375;AN=8;AO=23;CIGAR=1X1M1X;DP=114;DPB=114;DPRA=0;EPP=52.9542;EPPR=92.0407;GTI=0;LEN=1;MEANALT=2.25;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=880;QR=1506;RO=41;RPL=23;RPP=52.9542;RPPR=92.0407;RPR=0;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:51:10,11,29:10:369:11,29:421,1036:-85.819,-54.2734,-81.1442,-4.38315,0,-25.8305 0|1:28:20,4,4:20:743:4,4:154,140:-6.64152,0,-59.6174,-1.29307,-49.4386,-60.8814 0|0:17:9,3,5:9:320:3,5:113,195:-13.3284,-6.78259,-31.9305,0,-16.7919,-24.5521 1|0:18:2,5,11:2:74:5,11:192,398:-41.5936,-26.4279,-30.9779,-9.72091,0,-12.4595 dDocent_Contig_11304 10 . T C 1682.22 . AB=0.333333;ABP=21.1059;AC=5;AF=0.625;AN=8;AO=56;CIGAR=1X;DP=108;DPB=108;DPRA=0;EPP=124.613;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.964286;PAIREDR=0.769231;PAO=0;PQA=0;PQR=0;PRO=0;QA=2230;QR=1997;RO=52;RPL=0;RPP=124.613;RPPR=115.927;RPR=56;RUN=1;SAF=56;SAP=124.613;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:33:2,31:2:81:31:1240:-104.181,-2.24826,0 0/1:12:1,11:1:38:11:433:-35.7057,0,-0.184909 0/1:48:36,12:36:1375:12:476:-28.7391,0,-109.575 0/1:15:13,2:13:503:2:81:-3.17028,0,-41.1029 dDocent_Contig_11305 9 . G T 947.148 . AB=0.201923;ABP=83.2713;AC=0;AF=0;AN=8;AO=21;CIGAR=1M3I5M2D1M1X4M1X;DP=113;DPB=114.467;DPRA=0;EPP=48.6112;EPPR=120.27;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.285714;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=786;QR=2105;RO=54;RPL=0;RPP=48.6112;RPPR=120.27;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:30:15,4,11:15:589:4,11:146,419:-29.8612,-22.4531,-69.6998,0,-36.5438,-45.1544 0|0:30:18,4,8:18:709:4,8:156,321:-21.0369,-13.6356,-70.7549,0,-45.5088,-55.9234 0|0:44:17,13,13:17:658:13,13:484,513:-37.1049,-2.61376,-52.7477,0,-14.4468,-50.1452 0|0:9:4,0,5:4:149:0,5:0,183:-14.1095,-15.3137,-27.5124,0,-12.568,-11.0628 dDocent_Contig_11306 42 . C G 2965.63 . AB=0.124224;ABP=200.479;AC=1;AF=0.125;AN=8;AO=20;CIGAR=1X1M1X;DP=161;DPB=161;DPRA=0;EPP=46.4397;EPPR=94.2121;GTI=0;LEN=1;MEANALT=2.25;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=773;QR=1653;RO=42;RPL=0;RPP=46.4397;RPPR=94.2121;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:74:19,16,39:19:762:16,39:612,1473:-114.973,-70.4795,-128.454,0,-12.5896,-51.0529 0|0:60:18,1,40:18:693:1,40:40,1589:-125.391,-127.514,-184.092,0,-53.5736,-44.8282 1|0:13:1,2,10:1:38:2,10:81,394:-35.6894,-29.3095,-31.8227,-3.58744,0,-3.68539 0|0:14:4,1,9:4:160:1,9:40,354:-27.9051,-25.8135,-38.6944,0,-9.88482,-10.4706 dDocent_Contig_11307 143 . A G 116.449 . AB=0.666667;ABP=4.45795;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=35;DPB=35;DPRA=0.62069;EPP=11.6962;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.645161;PAO=0;PQA=0;PQR=0;PRO=0;QA=164;QR=1250;RO=31;RPL=0;RPP=11.6962;RPPR=70.3259;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=70.3259;SRR=31;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:11,0:11:431:0:0:0,-3.31133,-39.1367 0/0:15:15,0:15:615:0:0:0,-4.51545,-55.6861 0/0:3:3,0:3:122:0:0:0,-0.90309,-11.3725 0/1:6:2,4:2:82:4:164:-13.3437,0,-5.9735 dDocent_Contig_11308 21 . T A 3270.65 . AB=0.621302;ABP=24.6094;AC=4;AF=0.5;AN=8;AO=105;CIGAR=2M1X4M;DP=169;DPB=189;DPRA=0;EPP=222.412;EPPR=98.5551;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.971429;PAIREDR=0.909091;PAO=0;PQA=0;PQR=0;PRO=0;QA=4195;QR=1714;RO=44;RPL=0;RPP=231.015;RPPR=98.5551;RPR=105;RUN=1;SAF=104;SAP=222.412;SAR=1;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:56:11,3,42:11:428:3,42:108,1651:-132.496,-126.997,-161.264,0,-26.388,-22.5505 0|1:65:22,6,37:22:856:6,37:225,1488:-116.019,-104.216,-172.751,0,-51.9308,-59.2186 0|1:25:8,7,10:8:315:7,10:261,410:-31.4543,-12.514,-36.3134,0,-4.57087,-22.9146 0|1:23:3,4,16:3:115:4,16:142,646:-54.4933,-43.8366,-52.0672,-2.1034,0,-6.73689 dDocent_Contig_11309 117 . A C 127.389 . AB=0.714286;ABP=5.80219;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=21;DPB=21;DPRA=1;EPP=13.8677;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.2;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=178;QR=568;RO=16;RPL=0;RPP=13.8677;RPPR=37.7539;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=37.7539;SRR=16;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:7:2,5:2:72:5:178:-14.2614,0,-4.72951 0/0:5:5,0:5:179:0:0:0,-1.50515,-16.4604 0/0:9:9,0:9:317:0:0:0,-2.70927,-28.8693 ./.:.:.:.:.:.:.:. dDocent_Contig_11310 27 . A T 603.03 . AB=0.106061;ABP=91.9749;AC=0;AF=0;AN=8;AO=7;CIGAR=4M2X2M;DP=129;DPB=125.625;DPRA=1.65;EPP=18.2106;EPPR=209.3;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=59.9789;NS=4;NUMALT=2;ODDS=0;PAIRED=0.142857;PAIREDR=0.578947;PAO=0;PQA=0;PQR=0;PRO=0;QA=281;QR=3747;RO=95;RPL=0;RPP=18.2106;RPPR=209.3;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=95;SRP=209.3;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:43:28,15,0:28:1111:15,0:593,0:-40.7634,0,-87.3381,-49.1922,-91.8535,-140.65 0|0:39:31,5,3:31:1224:5,3:198,119:-6.96341,0,-99.2031,-6.49904,-90.9121,-106.305 0|0:27:16,7,4:16:640:7,4:277,162:-17.9741,0,-50.6086,-9.4289,-39.3565,-60.9476 0|0:20:20,0,0:20:772:0,0:0,0:0,-6.0206,-69.8007,-6.0206,-69.8007,-69.8007 dDocent_Contig_11312 9 . G A 145.494 . AB=0.189655;ABP=51.5315;AC=2;AF=0.25;AN=8;AO=12;CIGAR=1X;DP=103;DPB=103;DPRA=3.48148;EPP=29.068;EPPR=200.614;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.5055;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.923077;PAO=0;PQA=0;PQR=0;PRO=0;QA=425;QR=3492;RO=91;RPL=0;RPP=29.068;RPPR=200.614;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=91;SRP=200.614;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:36:35,1:35:1332:1:39:0,-6.94052,-116.233 0/1:38:31,7:31:1196:7:256:-11.9494,0,-96.4986 0/1:20:16,4:16:615:4:130:-5.99791,0,-49.6658 0/0:9:9,0:9:349:0:0:0,-2.70927,-31.7338 dDocent_Contig_11314 77 . A C 485.834 . AB=0.5;ABP=3.0103;AC=4;AF=0.5;AN=8;AO=17;CIGAR=1X;DP=35;DPB=35;DPRA=5.5;EPP=39.9253;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=672;QR=720;RO=18;RPL=17;RPP=39.9253;RPPR=42.0968;RPR=0;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:6,12:6:242:12:473:-37.5001,0,-16.739 1/1:1:0,1:0:0:1:41:-4.09457,-0.30103,0 0/1:14:10,4:10:399:4:158:-10.3859,0,-32.0551 0/0:2:2,0:2:79:0:0:0,-0.60206,-7.49763 dDocent_Contig_11315 40 . T G 81.6842 . AB=0.6;ABP=3.44459;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=39;DPB=39;DPRA=0.441176;EPP=9.52472;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=0.944444;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=1362;RO=36;RPL=0;RPP=9.52472;RPPR=81.1833;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:12:12,0:12:460:0:0:0,-3.61236,-41.7472 0/1:5:2,3:2:73:3:122:-9.86734,0,-5.42595 0/0:14:14,0:14:523:0:0:0,-4.21442,-47.407 0/0:8:8,0:8:306:0:0:0,-2.40824,-27.8996 dDocent_Contig_11316 41 . A G 685.054 . AB=0.287129;ABP=42.7633;AC=3;AF=0.375;AN=8;AO=29;CIGAR=1X;DP=126;DPB=126;DPRA=1.34667;EPP=65.983;EPPR=213.643;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1130;QR=3829;RO=97;RPL=0;RPP=65.983;RPPR=213.643;RPR=29;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=97;SRP=213.643;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:58:45,13:45:1784:13:487:-26.6966,0,-143.318 0/0:25:25,0:25:978:0:0:0,-7.52575,-88.3132 0/1:24:22,2:22:867:2:81:-0.461014,0,-71.1148 0/1:19:5,14:5:200:14:562:-45.2036,0,-12.66 dDocent_Contig_11317 26 . G T 445.618 . AB=0.36;ABP=11.5225;AC=3;AF=0.375;AN=8;AO=20;CIGAR=1X;DP=89;DPB=89;DPRA=0;EPP=46.4397;EPPR=152.842;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=792;QR=2733;RO=69;RPL=0;RPP=46.4397;RPPR=152.842;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=69;SRP=152.842;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:15,10:15:595:10:395:-28.3791,0,-46.3602 0/0:39:37,2:37:1463:2:82:0,-3.96049,-124.139 0/1:8:5,3:5:196:3:117:-8.50105,0,-15.6048 0/1:17:12,5:12:479:5:198:-13.0796,0,-38.3424 dDocent_Contig_11320 37 . T G 557.586 . AB=0.456522;ABP=3.76559;AC=4;AF=0.5;AN=8;AO=21;CIGAR=1X;DP=46;DPB=46;DPRA=0;EPP=48.6112;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=0.761905;PAIREDR=0.791667;PAO=0;PQA=0;PQR=0;PRO=0;QA=838;QR=976;RO=24;RPL=0;RPP=48.6112;RPPR=55.1256;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:9,15:9:364:15:603:-47.1694,0,-25.6797 0/1:12:10,2:10:407:2:81:-4.07337,0,-33.3782 0/1:3:2,1:2:82:1:36:-2.69518,0,-6.87659 0/1:6:3,3:3:123:3:118:-9.19633,0,-9.65861 dDocent_Contig_11322 122 . A G 370.981 . AB=0.444444;ABP=3.49285;AC=4;AF=0.5;AN=8;AO=8;CIGAR=2X1M1X2M1I1X3M1X3M1X;DP=83;DPB=85.2667;DPRA=0.391304;EPP=20.3821;EPPR=111.584;GTI=0;LEN=1;MEANALT=3;MQM=36;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0.666667;PQA=24.6667;PQR=0;PRO=0;QA=309;QR=1766;RO=50;RPL=0;RPP=20.3821;RPPR=111.584;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=0;SRP=111.584;SRR=50;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:46:40,3,3,0:40:1415:3,3,0:111,116,0:0,-4.81508,-119.353,-9.53217,-117.67,-123.913,-12.0412,-120.256,-124.817,-127.404 1|1:18:0,5,5,8:0:0:5,5,8:193,195,309:-32.816,-22.195,-20.6899,-23.1664,-12.5644,-21.6613,-10.6374,0,-0.984574,-8.22914 0|1:4:1,0,2,0:1:29:0,2,0:0,77,0:-3.51553,-3.81656,-6.1298,0,-2.29426,-1.6922,-3.81656,-6.1298,-2.29426,-6.1298 0|1:15:9,1,5,0:9:322:1,5,0:38,187,0:-5.7945,-6.23088,-32.2734,0,-24.0674,-24.8177,-8.50377,-32.5744,-26.3228,-34.8354 dDocent_Contig_11323 107 . N T 179.76 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=6;CIGAR=1X;DP=6;DPB=6;DPRA=0;EPP=16.0391;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=36.8333;MQMR=0;NS=3;NUMALT=1;ODDS=1.69407e-21;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=201;QR=0;RO=0;RPL=0;RPP=16.0391;RPPR=0;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:1:0,1:0:0:1:33:-3.20272,-0.30103,0 1/1:3:0,3:0:0:3:98:-9.00013,-0.90309,0 1/1:2:0,2:0:0:2:70:-5.1701,-0.60206,0 dDocent_Contig_11324 96 . G A 197.798 . AB=0.245283;ABP=32.8783;AC=3;AF=0.375;AN=8;AO=14;CIGAR=1X;DP=74;DPB=74;DPRA=0;EPP=33.4109;EPPR=133.299;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.866667;PAO=0;PQA=0;PQR=0;PRO=0;QA=476;QR=2019;RO=60;RPL=14;RPP=33.4109;RPPR=133.299;RPR=0;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:14,6:14:483:6:202:-12.4899,0,-37.7769 0/0:21:20,1:20:698:1:34:0,-2.92272,-59.7445 0/1:16:11,5:11:351:5:168:-10.6344,0,-27.0814 0/1:17:15,2:15:487:2:72:-1.71921,0,-39.022 dDocent_Contig_11325 11 . G A 32.6658 . AB=0.122449;ABP=63.6786;AC=3;AF=0.375;AN=8;AO=6;CIGAR=1X;DP=68;DPB=68;DPRA=0.859649;EPP=16.0391;EPPR=137.642;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.833333;PAIREDR=0.903226;PAO=0;PQA=0;PQR=0;PRO=0;QA=244;QR=2434;RO=62;RPL=0;RPP=16.0391;RPPR=137.642;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:19:19,0:19:751:0:0:0,-5.71957,-67.9171 0/1:22:19,3:19:735:3:123:-4.84213,0,-59.8512 0/1:19:17,2:17:668:2:81:-1.96616,0,-54.7324 0/1:8:7,1:7:280:1:40:-1.58744,0,-23.163 dDocent_Contig_11328 84 . A T 46.9097 . AB=0.166667;ABP=26.1727;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=66;DPB=66;DPRA=1.71429;EPP=11.6962;EPPR=90.5697;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.6129;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.725806;PAO=0;PQA=0;PQR=0;PRO=0;QA=144;QR=2140;RO=62;RPL=4;RPP=11.6962;RPPR=137.642;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=56;SRP=90.5697;SRR=6;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:20,4:20:700:4:144:-6.0889,0,-56.0135 0/0:12:12,0:12:422:0:0:0,-3.61236,-38.2992 0/0:22:22,0:22:735:0:0:0,-6.62266,-66.4573 0/0:8:8,0:8:283:0:0:0,-2.40824,-25.8095 dDocent_Contig_11329 23 . G A 997.315 . AB=0.433735;ABP=6.17594;AC=3;AF=0.375;AN=8;AO=36;CIGAR=1X;DP=88;DPB=88;DPRA=5.53333;EPP=81.1833;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1434;QR=2086;RO=52;RPL=0;RPP=81.1833;RPPR=115.927;RPR=36;RUN=1;SAF=36;SAP=81.1833;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:46:28,18:28:1118:18:708:-50.1991,0,-87.053 0/1:28:16,12:16:645:12:484:-35.4822,0,-49.9554 0/1:9:3,6:3:120:6:242:-19.4481,0,-8.47804 0/0:5:5,0:5:203:0:0:0,-1.50515,-18.6531 dDocent_Contig_11330 20 . A C 147.214 . AB=0.259259;ABP=16.6021;AC=2;AF=0.25;AN=8;AO=7;CIGAR=1X;DP=60;DPB=60;DPRA=0.818182;EPP=18.2106;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.571429;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=283;QR=2109;RO=53;RPL=0;RPP=18.2106;RPPR=118.098;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:28:28,0:28:1111:0:0:0,-8.42884,-100.279 0/1:21:18,3:18:717:3:121:-4.95836,0,-58.5347 0/0:5:5,0:5:201:0:0:0,-1.50515,-18.4705 0/1:6:2,4:2:80:4:162:-13.1608,0,-5.78539 dDocent_Contig_11331 22 . G A 300.636 . AB=0.152778;ABP=153.807;AC=4;AF=0.5;AN=8;AO=22;CIGAR=1X;DP=144;DPB=144;DPRA=0;EPP=50.7827;EPPR=267.93;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=881;QR=4796;RO=122;RPL=0;RPP=50.7827;RPPR=267.93;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=122;SRP=267.93;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:65:58,7:58:2252:7:274:-5.45876,0,-183.29 0/1:44:37,7:37:1478:7:283:-12.5981,0,-120.022 0/1:27:24,3:24:953:3:122:-3.24468,0,-77.9434 0/1:8:3,5:3:113:5:202:-16.1538,0,-8.12934 dDocent_Contig_11332 21 . C T 345.419 . AB=0.225806;ABP=63.7415;AC=4;AF=0.5;AN=8;AO=21;CIGAR=2M1X1M;DP=93;DPB=88.5;DPRA=0;EPP=48.6112;EPPR=139.813;GTI=0;LEN=1;MEANALT=1.75;MQM=46.8095;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.666667;PAIREDR=0.777778;PAO=0;PQA=0;PQR=0;PRO=0;QA=769;QR=2509;RO=63;RPL=0;RPP=48.6112;RPPR=139.813;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=63;SRP=139.813;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:19:11,2,6:11:433:2,6:80,230:-15.4095,-15.7754,-50.8021,0,-32.8224,-33.9764 0|1:27:21,2,4:21:835:2,4:81,141:-4.89854,-6.35426,-74.5423,0,-63.9593,-67.6263 0|1:27:18,5,4:18:723:5,4:202,134:-4.40134,-2.40122,-60.5529,0,-52.3025,-58.5317 0|1:20:13,0,7:13:518:0,7:0,264:-17.2294,-21.1428,-63.8206,0,-43.0532,-40.946 dDocent_Contig_11333 30 . G A 740.867 . AB=0.4;ABP=9.09042;AC=4;AF=0.5;AN=8;AO=28;CIGAR=1X;DP=70;DPB=70;DPRA=0;EPP=63.8115;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=0.25;PAIREDR=0.357143;PAO=0;PQA=0;PQR=0;PRO=0;QA=1123;QR=1678;RO=42;RPL=0;RPP=63.8115;RPPR=94.2121;RPR=28;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:13,8:13:526:8:314:-22.3006,0,-41.3655 0/1:16:9,7:9:362:7:281:-20.8452,0,-28.1275 0/1:20:14,6:14:551:6:244:-16.3182,0,-43.91 0/1:13:6,7:6:239:7:284:-22.0206,0,-17.9714 dDocent_Contig_11336 12 . C T 85.4298 . AB=0.25;ABP=11.6962;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=62;DPB=62;DPRA=1.04348;EPP=11.6962;EPPR=128.956;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=163;QR=2334;RO=58;RPL=0;RPP=11.6962;RPPR=128.956;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:22:22,0:22:890:0:0:0,-6.62266,-80.4069 0/1:16:12,4:12:474:4:163:-10.2419,0,-38.1881 0/0:14:14,0:14:572:0:0:0,-4.21442,-51.8216 0/0:10:10,0:10:398:0:0:0,-3.0103,-36.1772 dDocent_Contig_11337 56 . G A 154.951 . AB=0;ABP=0;AC=4;AF=0.5;AN=8;AO=4;CIGAR=1X;DP=28;DPB=28;DPRA=0.166667;EPP=11.6962;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.38813e-21;PAIRED=1;PAIREDR=0.875;PAO=0;PQA=0;PQR=0;PRO=0;QA=157;QR=926;RO=24;RPL=4;RPP=11.6962;RPPR=55.1256;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:19:19,0:19:733:0:0:0,-5.71957,-66.2877 1/1:3:0,3:0:0:3:119:-11.095,-0.90309,0 1/1:1:0,1:0:0:1:38:-3.79727,-0.30103,0 0/0:5:5,0:5:193:0:0:0,-1.50515,-17.7399 dDocent_Contig_11339 32 . A G 87.4357 . AB=0.166667;ABP=20.3821;AC=3;AF=0.375;AN=8;AO=4;CIGAR=1X;DP=31;DPB=31;DPRA=1.58333;EPP=11.6962;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=164;QR=1085;RO=27;RPL=0;RPP=11.6962;RPPR=61.6401;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:9:9,0:9:360:0:0:0,-2.70927,-32.7629 0/1:18:15,3:15:604:3:123:-6.04625,0,-49.279 1/1:1:0,1:0:0:1:41:-4.09457,-0.30103,0 0/0:3:3,0:3:121:0:0:0,-0.90309,-11.28 dDocent_Contig_11340 34 . G T 744.087 . AB=0.402985;ABP=8.4876;AC=3;AF=0.375;AN=8;AO=27;CIGAR=1X;DP=73;DPB=73;DPRA=3.72222;EPP=61.6401;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1098;QR=1857;RO=46;RPL=0;RPP=61.6401;RPPR=102.898;RPR=27;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:14,2:14:572:2:82:-2.9632,0,-47.0051 0/1:33:10,23:10:407:23:934:-74.4269,0,-27.0566 0/1:18:16,2:16:649:2:82:-2.36114,0,-53.3243 0/0:6:6,0:6:229:0:0:0,-1.80618,-20.969 dDocent_Contig_11342 11 . A G 145.638 . AB=0.25;ABP=20.3821;AC=3;AF=0.375;AN=8;AO=8;CIGAR=1X;DP=52;DPB=52;DPRA=0.533333;EPP=20.3821;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.431818;PAO=0;PQA=0;PQR=0;PRO=0;QA=316;QR=1720;RO=44;RPL=0;RPP=20.3821;RPPR=98.5551;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:20:20,0:20:784:0:0:0,-6.0206,-70.8824 0/1:14:12,2:12:466:2:80:-3.37716,0,-38.0767 0/1:13:9,4:9:353:4:160:-10.8704,0,-28.2171 0/1:5:3,2:3:117:2:76:-5.70966,0,-9.40506 dDocent_Contig_11343 43 . T A 49.4957 . AB=0.25;ABP=9.52472;AC=1;AF=0.25;AN=4;AO=3;CIGAR=1X;DP=33;DPB=33;DPRA=0.571429;EPP=9.52472;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.966667;PAO=0;PQA=0;PQR=0;PRO=0;QA=110;QR=1191;RO=30;RPL=0;RPP=9.52472;RPPR=68.1545;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:9,3:9:366:3:110:-6.64854,0,-29.6928 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 0/0:21:21,0:21:825:0:0:0,-6.32163,-74.5653 dDocent_Contig_11344 15 . T C 239.594 . AB=0.213115;ABP=46.6177;AC=2;AF=0.25;AN=8;AO=13;CIGAR=1X;DP=80;DPB=80;DPRA=3.21053;EPP=31.2394;EPPR=148.499;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=500;QR=2571;RO=67;RPL=0;RPP=31.2394;RPPR=148.499;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=67;SRP=148.499;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:24,5:24:917:5:195:-9.19276,0,-74.1123 0/1:32:24,8:24:924:8:305:-18.1646,0,-73.8425 0/0:13:13,0:13:500:0:0:0,-3.91339,-45.3479 0/0:6:6,0:6:230:0:0:0,-1.80618,-21.0669 dDocent_Contig_11345 138 . T C 172.337 . AB=0.45;ABP=3.44459;AC=2;AF=0.25;AN=8;AO=11;CIGAR=1X;DP=67;DPB=67;DPRA=0;EPP=26.8965;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.909091;PAIREDR=0.946429;PAO=0;PQA=0;PQR=0;PRO=0;QA=353;QR=1830;RO=56;RPL=0;RPP=26.8965;RPPR=124.613;RPR=11;RUN=1;SAF=0;SAP=26.8965;SAR=11;SRF=0;SRP=124.613;SRR=56;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:18:17,1:17:569:1:27:0,-2.71876,-48.8282 0/0:29:28,1:28:891:1:35:0,-5.23124,-76.9836 0/1:15:7,8:7:242:8:256:-18.8371,0,-17.6022 0/1:5:4,1:4:128:1:35:-1.99348,0,-10.331 dDocent_Contig_11346 19 . C A 90.5074 . AB=0.159091;ABP=47.4268;AC=2;AF=0.25;AN=8;AO=7;CIGAR=1X2M1X;DP=59;DPB=59;DPRA=2.93333;EPP=18.2106;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=277;QR=2070;RO=52;RPL=0;RPP=18.2106;RPPR=115.927;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:37:32,5:32:1278:5:198:-7.05766,0,-104.153 0|0:14:14,0:14:552:0:0:0,-4.21442,-50.021 0|0:1:1,0:1:41:0:0:0,-0.30103,-4.09457 0|1:7:5,2:5:199:2:79:-5.39042,0,-16.1808 dDocent_Contig_11347 16 . A G 782.714 . AB=0.7;ABP=13.4334;AC=3;AF=0.375;AN=8;AO=25;CIGAR=1X1M1X3M1X2M1X1M1X;DP=45;DPB=45;DPRA=3.09091;EPP=57.2971;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=59.88;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.88;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=978;QR=781;RO=20;RPL=0;RPP=57.2971;RPPR=46.4397;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:2:2,0:2:80:0:0:0,-0.60206,-7.59179 0|1:30:9,21:9:346:21:828:-65.8074,0,-22.4674 0|0:9:9,0:9:355:0:0:0,-2.70927,-32.3129 1|1:4:0,4:0:0:4:150:-13.8617,-1.20412,0 dDocent_Contig_11348 28 . A G 564.393 . AB=0.782609;ABP=18.9659;AC=1;AF=0.125;AN=8;AO=18;CIGAR=1X;DP=82;DPB=82;DPRA=1.16949;EPP=42.0968;EPPR=141.985;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.796875;PAO=0;PQA=0;PQR=0;PRO=0;QA=716;QR=2529;RO=64;RPL=0;RPP=42.0968;RPPR=141.985;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=64;SRP=141.985;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:5,18:5:202:18:716:-57.8372,0,-11.6384 0/0:12:12,0:12:473:0:0:0,-3.61236,-42.917 0/0:25:25,0:25:997:0:0:0,-7.52575,-90.028 0/0:22:22,0:22:857:0:0:0,-6.62266,-77.4342 dDocent_Contig_11349 112 . A T 53.3908 . AB=0;ABP=0;AC=2;AF=0.333333;AN=6;AO=2;CIGAR=1X;DP=14;DPB=14;DPRA=0.333333;EPP=7.35324;EPPR=29.068;GTI=0;LEN=1;MEANALT=1;MQM=26;MQMR=60;NS=3;NUMALT=1;ODDS=1.69407e-21;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=72;QR=413;RO=12;RPL=0;RPP=7.35324;RPPR=29.068;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=29.068;SRR=12;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:72:-4.86154,-0.60206,0 ./.:.:.:.:.:.:.:. 0/0:7:7,0:7:240:0:0:0,-2.10721,-21.9352 0/0:5:5,0:5:173:0:0:0,-1.50515,-15.9102 dDocent_Contig_11350 27 . G T 69.5741 . AB=0.2;ABP=18.6449;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=100;DPB=100;DPRA=0.75;EPP=11.6962;EPPR=209.3;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.936842;PAO=0;PQA=0;PQR=0;PRO=0;QA=160;QR=3732;RO=95;RPL=0;RPP=11.6962;RPPR=209.3;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=95;SRP=209.3;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:39:39,0:39:1524:0:0:0,-11.7402,-137.404 0/0:25:25,0:25:970:0:0:0,-7.52575,-87.5956 0/1:20:15,4:15:600:4:160:-8.65638,0,-48.211 0/0:16:16,0:16:638:0:0:0,-4.81648,-57.7546 dDocent_Contig_11352 7 . T C 4331.45 . AB=0.262548;ABP=129.853;AC=4;AF=0.5;AN=8;AO=68;CIGAR=2M1X2M;DP=259;DPB=289.6;DPRA=0;EPP=150.67;EPPR=57.2971;GTI=0;LEN=1;MEANALT=4.75;MQM=60;MQMR=60;NS=4;NUMALT=4;ODDS=5.55112e-17;PAIRED=0.176471;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2621;QR=949;RO=25;RPL=0;RPP=150.67;RPPR=57.2971;RPR=68;RUN=1;SAF=68;SAP=150.67;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:93:10,11,5,36,26:10:384:11,5,36,26:425,192,1307,1002:-153.365,-121.672,-149.884,-140.614,-137.434,-170.632,-50.7554,-47.5755,-66.5165,-71.4405,-74.0931,-70.913,-89.8556,0,-97.791 0|1:101:12,12,8,36,28:12:451:12,8,36,28:461,303,1196,1079:-142.345,-108.302,-141.642,-121.114,-120.41,-155.658,-51.6556,-50.952,-63.7627,-77.7673,-57.3442,-56.6408,-69.4536,0,-85.8701 0|1:38:3,4,0,23,8:3:114:4,0,23,8:151,0,731,310:-71.5849,-60.1062,-68.2563,-72.4879,-69.4604,-81.8412,-16.1242,-13.099,-25.4729,-18.5492,-47.0036,-43.9751,-56.3595,0,-53.9513 0|1:27:0,3,0,18,6:0:0:3,0,18,6:117,0,665,230:-73.2471,-63.6275,-62.7245,-73.2471,-63.6275,-73.2471,-18.8731,-9.25329,-18.8731,-13.4546,-54.3671,-44.7465,-54.3671,0,-52.5609 dDocent_Contig_11354 9 . G A 11183.2 . AB=0.717504;ABP=240.107;AC=4;AF=0.5;AN=8;AO=414;CIGAR=1X3M;DP=577;DPB=577;DPRA=0;EPP=902;EPPR=267.93;GTI=0;LEN=1;MEANALT=5.25;MQM=49.7512;MQMR=59.4754;NS=4;NUMALT=2;ODDS=0;PAIRED=0.47343;PAIREDR=0.0655738;PAO=0;PQA=0;PQR=0;PRO=0;QA=14640;QR=4751;RO=122;RPL=0;RPP=902;RPPR=267.93;RPR=414;RUN=1;SAF=414;SAP=902;SAR=0;SRF=122;SRP=267.93;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:222:51,1,152:51:1994:1,152:40,5627:-437.984,-450.109,-613.694,0,-160.65,-118.121 0|1:185:32,2,143:32:1257:2,143:77,5269:-413.819,-417.263,-520.047,0,-97.2124,-60.3539 0|1:119:28,4,84:28:1068:4,84:156,2554:-183.727,-179.517,-265.863,0,-74.8906,-62.2386 0|1:51:11,4,35:11:432:4,35:158,1190:-90.1867,-82.0245,-116.363,0,-24.0883,-25.0137 dDocent_Contig_11355 14 . G A 336.533 . AB=0.224719;ABP=61.5913;AC=4;AF=0.5;AN=8;AO=20;CIGAR=1X;DP=89;DPB=89;DPRA=0;EPP=46.4397;EPPR=152.842;GTI=0;LEN=1;MEANALT=1;MQM=52.25;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.75;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=796;QR=2791;RO=69;RPL=0;RPP=46.4397;RPPR=152.842;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=69;SRP=152.842;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:23,4:23:933:4:161:-6.74746,0,-76.1441 0/1:31:19,12:19:770:12:475:-28.3907,0,-60.2882 0/1:25:22,3:22:886:3:119:-3.56943,0,-72.5234 0/1:6:5,1:5:202:1:41:-2.28839,0,-16.7553 dDocent_Contig_11358 82 . A G 59.4568 . AB=0.333333;ABP=5.18177;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=141;DPB=141;DPRA=1.87755;EPP=11.6962;EPPR=300.502;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=148;QR=4922;RO=137;RPL=4;RPP=11.6962;RPPR=300.502;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=137;SRP=300.502;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:83:82,1:82:2968:1:37:0,-21.2877,-263.644 0/0:39:39,0:39:1383:0:0:0,-11.7402,-124.762 0/1:9:6,3:6:222:3:111:-7.64465,0,-17.6288 0/0:10:10,0:10:349:0:0:0,-3.0103,-31.7437 dDocent_Contig_11361 11 . C A 1055.59 . AB=0.324138;ABP=41.962;AC=4;AF=0.5;AN=8;AO=47;CIGAR=1X;DP=145;DPB=145;DPRA=0;EPP=105.07;EPPR=215.815;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1710;QR=3941;RO=98;RPL=0;RPP=105.07;RPPR=215.815;RPR=47;RUN=1;SAF=47;SAP=105.07;SAR=0;SRF=98;SRP=215.815;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:67:46,21:46:1852:21:769:-49.3688,0,-146.712 0/1:18:10,8:10:401:8:288:-20.8485,0,-31.031 0/1:41:25,16:25:1006:16:586:-40.7348,0,-78.4922 0/1:19:17,2:17:682:2:67:-0.642956,0,-55.9868 dDocent_Contig_11363 166 . T C 152.247 . AB=0.428571;ABP=3.63072;AC=2;AF=0.25;AN=8;AO=6;CIGAR=1X;DP=33;DPB=33;DPRA=0.736842;EPP=16.0391;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=243;QR=1075;RO=27;RPL=6;RPP=16.0391;RPPR=61.6401;RPR=0;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=61.6401;SRR=27;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:7:2,5:2:80:5:203:-16.5458,0,-5.48458 0/1:7:6,1:6:237:1:40:-1.88847,0,-19.5954 0/0:7:7,0:7:271:0:0:0,-2.10721,-24.7521 0/0:12:12,0:12:487:0:0:0,-3.61236,-44.1809 dDocent_Contig_11364 18 . T C 63.6219 . AB=0.3;ABP=6.48466;AC=1;AF=0.25;AN=4;AO=3;CIGAR=1X;DP=43;DPB=43;DPRA=0.30303;EPP=9.52472;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=1626;RO=40;RPL=0;RPP=9.52472;RPPR=89.8692;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:33:33,0:33:1347:0:0:0,-9.93399,-121.482 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 0/1:10:7,3:7:279:3:122:-8.36219,0,-22.4685 dDocent_Contig_11366 23 . G A 758.248 . AB=0.348837;ABP=20.0791;AC=4;AF=0.5;AN=8;AO=30;CIGAR=1X;DP=86;DPB=86;DPRA=0;EPP=68.1545;EPPR=107.861;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.0357;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.964286;PAO=0;PQA=0;PQR=0;PRO=0;QA=1196;QR=2202;RO=56;RPL=0;RPP=68.1545;RPPR=124.613;RPR=30;RUN=1;SAF=30;SAP=68.1545;SAR=0;SRF=54;SRP=107.861;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:18,11:18:715:11:445:-31.6756,0,-55.4528 0/1:29:19,10:19:735:10:396:-27.268,0,-57.7282 0/1:19:13,6:13:511:6:233:-15.6158,0,-40.6063 0/1:9:6,3:6:241:3:122:-8.66322,0,-18.8585 dDocent_Contig_11368 20 . G T 142.496 . AB=0.352941;ABP=6.20364;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=32;DPB=32;DPRA=3.4;EPP=16.0391;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=230;QR=1023;RO=26;RPL=0;RPP=16.0391;RPPR=59.4686;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5,0:5:203:0:0:0,-1.50515,-18.6531 0/1:17:11,6:11:422:6:230:-15.9484,0,-33.2065 0/0:7:7,0:7:278:0:0:0,-2.10721,-25.3896 0/0:3:3,0:3:120:0:0:0,-0.90309,-11.1873 dDocent_Contig_11369 24 . G A 82.6279 . AB=0.307692;ABP=7.18621;AC=2;AF=0.25;AN=8;AO=4;CIGAR=1X;DP=43;DPB=43;DPRA=0.433333;EPP=11.6962;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.74359;PAO=0;PQA=0;PQR=0;PRO=0;QA=163;QR=1552;RO=39;RPL=0;RPP=11.6962;RPPR=87.6977;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:6:3,3:3:123:3:122:-9.56631,0,-9.65861 0/0:7:7,0:7:283:0:0:0,-2.10721,-25.843 0/0:23:23,0:23:911:0:0:0,-6.92369,-82.2936 0/1:7:6,1:6:235:1:41:-1.98736,0,-19.4126 dDocent_Contig_11370 159 . T A 42.7896 . AB=0.166667;ABP=20.3821;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=50;DPB=50;DPRA=1.6875;EPP=9.52472;EPPR=73.2828;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=46.0213;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.659574;PAO=0;PQA=0;PQR=0;PRO=0;QA=119;QR=1763;RO=47;RPL=3;RPP=9.52472;RPPR=73.2828;RPR=0;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=105.07;SRR=47;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:15,3:15:571:3:119:-5.67685,0,-29.7068 0/0:18:18,0:18:675:0:0:0,-5.41854,-52.6673 0/0:6:6,0:6:238:0:0:0,-1.80618,-20.0516 0/0:8:8,0:8:279:0:0:0,-2.40824,-22.15 dDocent_Contig_11371 25 . G T 82.4236 . AB=0.222222;ABP=15.074;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=31;DPB=31;DPRA=4.15385;EPP=11.6962;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.925926;PAO=0;PQA=0;PQR=0;PRO=0;QA=163;QR=1042;RO=27;RPL=0;RPP=11.6962;RPPR=61.6401;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:14,4:14:522:4:163:-9.63989,0,-41.8923 0/0:3:3,0:3:117:0:0:0,-0.90309,-10.9097 0/0:2:2,0:2:81:0:0:0,-0.60206,-7.68573 0/0:8:8,0:8:322:0:0:0,-2.40824,-29.3485 dDocent_Contig_11373 40 . A G 1289.28 . AB=0.281915;ABP=80.6751;AC=1;AF=0.125;AN=8;AO=55;CIGAR=1X;DP=525;DPB=525;DPRA=0.996198;EPP=122.441;EPPR=1023.6;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=0.982979;PAO=0;PQA=0;PQR=0;PRO=0;QA=2158;QR=18331;RO=470;RPL=0;RPP=122.441;RPPR=1023.6;RPR=55;RUN=1;SAF=55;SAP=122.441;SAR=0;SRF=470;SRP=1023.6;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:163:163,0:163:6376:0:0:0,-49.0679,-573.646 0/1:188:135,53:135:5270:53:2078:-130.627,0,-417.619 0/0:100:100,0:100:3854:0:0:0,-30.103,-346.906 0/0:74:72,2:72:2831:2:80:0,-14.6844,-247.326 dDocent_Contig_11374 10 . G A 177.057 . AB=0.411765;ABP=4.1599;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X2M1X1M1X;DP=22;DPB=22;DPRA=1.7;EPP=18.2106;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=279;QR=601;RO=15;RPL=0;RPP=18.2106;RPPR=35.5824;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=15;SRP=35.5824;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. 0|1:9:3,6:3:120:6:239:-19.1759,0,-8.47863 0|1:8:7,1:7:282:1:40:-1.58744,0,-23.3447 0|0:5:5,0:5:199:0:0:0,-1.50515,-18.2889 dDocent_Contig_11375 7 . T C 113.01 . AB=0.155172;ABP=62.913;AC=2;AF=0.25;AN=8;AO=13;CIGAR=1X;DP=133;DPB=133;DPRA=0;EPP=31.2394;EPPR=198.732;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.9917;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=0.923077;PAIREDR=0.8;PAO=0;PQA=0;PQR=0;PRO=0;QA=503;QR=4587;RO=120;RPL=0;RPP=31.2394;RPPR=263.587;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=112;SRP=198.732;SRR=8;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:38:36,2:36:1372:2:78:0,-4.03567,-116.359 0/1:38:33,5:33:1281:5:193:-6.30222,0,-104.14 0/0:37:35,2:35:1316:2:76:0,-3.92344,-111.506 0/1:20:16,4:16:618:4:156:-8.39669,0,-49.939 dDocent_Contig_11377 18 . A T 137.078 . AB=0.111111;ABP=26.6552;AC=1;AF=0.125;AN=8;AO=3;CIGAR=2X;DP=50;DPB=50;DPRA=0;EPP=9.52472;EPPR=87.6977;GTI=0;LEN=1;MEANALT=2;MQM=56;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0.512821;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=1560;RO=39;RPL=0;RPP=9.52472;RPPR=87.6977;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:18:15,2,1:15:602:2,1:81,41:-2.14738,0,-48.9934,-3.28441,-46.2182,-52.5836 0|0:15:13,1,1:13:524:1,1:41,41:0,-0.536992,-43.421,-0.528905,-40.3375,-43.4137 0|0:4:2,0,2:2:81:0,2:0,81:-6.3382,-6.94026,-13.6232,0,-7.08367,-6.48161 0|0:13:9,0,4:9:353:0,4:0,164:-10.5484,-13.2576,-42.2843,0,-29.4179,-28.2137 dDocent_Contig_11378 24 . G T 78.3752 . AB=0.178571;ABP=28.1373;AC=2;AF=0.25;AN=8;AO=5;CIGAR=1X2M1X2M1X2M1X;DP=31;DPB=31;DPRA=9.33333;EPP=13.8677;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=191;QR=990;RO=26;RPL=0;RPP=13.8677;RPPR=59.4686;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:16:12,4:12:460:4:152:-9.23255,0,-36.9337 0|1:12:11,1:11:411:1:39:-0.284205,0,-33.7224 0|0:1:1,0:1:40:0:0:0,-0.30103,-3.99568 0|0:2:2,0:2:79:0:0:0,-0.60206,-7.49763 dDocent_Contig_11379 22 . T G 65.71 . AB=0.3;ABP=6.48466;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=33;DPB=33;DPRA=1.30435;EPP=9.52472;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=58.7667;NS=4;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=0.633333;PAO=0;PQA=0;PQR=0;PRO=0;QA=121;QR=1162;RO=30;RPL=0;RPP=9.52472;RPPR=68.1545;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:8:8,0:8:317:0:0:0,-2.40824,-28.8671 0/1:10:7,3:7:264:3:121:-8.2699,0,-21.1082 0/0:11:11,0:11:424:0:0:0,-3.31133,-38.4752 0/0:4:4,0:4:157:0:0:0,-1.20412,-14.5083 dDocent_Contig_11380 13 . C T 3567.23 . AB=0.115385;ABP=69.8248;AC=3;AF=0.375;AN=8;AO=6;CIGAR=1X2M1X;DP=179;DPB=179;DPRA=0;EPP=16.0391;EPPR=92.0407;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=221;QR=1636;RO=41;RPL=0;RPP=16.0391;RPPR=92.0407;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:52:27,1,6,18:27:1078:1,6,18:38,221,715:-50.7453,-55.757,-144.242,-40.8096,-126.476,-127.786,0,-85.6879,-70.7392,-83.3855 1|0:69:7,19,0,41:7:276:19,0,41:738,0,1661:-172.797,-114.267,-131.254,-174.904,-136.973,-197.611,-37.9285,0,-60.6375,-48.2953 1|0:26:0,12,0,14:0:0:12,0,14:465,0,566:-85.2627,-47.0687,-43.4564,-85.2627,-47.0687,-85.2627,-38.5889,0,-38.5889,-34.3744 1|0:32:7,14,0,11:7:282:14,0,11:542,0,439:-55.3169,-12.9078,-31.938,-57.4241,-36.1524,-80.6695,-21.2642,0,-44.5125,-41.2012 dDocent_Contig_11381 34 . C A 87.6184 . AB=0.333333;ABP=5.9056;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=57;DPB=57;DPRA=0.8;EPP=11.6962;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=149;QR=2060;RO=53;RPL=0;RPP=11.6962;RPPR=118.098;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:8,4:8:322:4:149:-10.1598,0,-25.7349 0/0:22:22,0:22:847:0:0:0,-6.62266,-76.5382 0/0:10:10,0:10:372:0:0:0,-3.0103,-33.812 0/0:13:13,0:13:519:0:0:0,-3.91339,-47.0552 dDocent_Contig_11384 7 . T C 12071.1 . AB=0.125;ABP=208.214;AC=1;AF=0.125;AN=8;AO=35;CIGAR=2X;DP=422;DPB=422;DPRA=0;EPP=79.0118;EPPR=55.1256;GTI=0;LEN=1;MEANALT=2;MQM=59.7143;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.0285714;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1352;QR=914;RO=24;RPL=0;RPP=79.0118;RPPR=55.1256;RPR=35;RUN=1;SAF=35;SAP=79.0118;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:202:10,10,182:10:386:10,182:387,7034:-597.818,-569.037,-597.728,-23.0866,-22.9964,0 0|0:77:10,9,58:10:381:9,58:345,2256:-182.399,-157.101,-185.644,0,-2.94176,-13.7925 1|0:91:2,12,77:2:77:12,77:465,2987:-276.695,-239.101,-241.811,-31.8759,0,-15.0186 0|0:52:2,4,46:2:70:4,46:155,1778:-153.6,-141.468,-145.957,-8.16496,-1.08834,0 dDocent_Contig_11385 10 . C T 375.041 . AB=0.296296;ABP=22.4731;AC=2;AF=0.25;AN=8;AO=19;CIGAR=1X;DP=123;DPB=123;DPRA=0;EPP=44.2683;EPPR=228.843;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=57.3846;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=0.884615;PAO=0;PQA=0;PQR=0;PRO=0;QA=747;QR=4144;RO=104;RPL=0;RPP=44.2683;RPPR=228.843;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=104;SRP=228.843;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:22,9:22:874:9:346:-22.164,0,-65.6867 0/1:23:16,7:16:645:7:281:-18.738,0,-51.4592 0/0:45:43,2:43:1710:2:81:0,-5.86062,-146.435 0/0:24:23,1:23:915:1:39:0,-3.32816,-77.6197 dDocent_Contig_11386 27 . T C 1111.1 . AB=0.705882;ABP=21.7871;AC=3;AF=0.375;AN=8;AO=36;CIGAR=1X;DP=52;DPB=52;DPRA=17;EPP=81.1833;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1442;QR=641;RO=16;RPL=0;RPP=81.1833;RPPR=37.7539;RPR=36;RUN=1;SAF=36;SAP=81.1833;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:5,18:5:203:18:719:-58.113,0,-11.7294 0/1:18:9,9:9:358:9:359:-27.2551,0,-27.1648 0/1:10:1,9:1:40:9:364:-30.1145,0,-0.985379 0/0:1:1,0:1:40:0:0:0,-0.30103,-3.99568 dDocent_Contig_11388 10 . C A 3327.44 . AB=0.781818;ABP=78.8934;AC=5;AF=0.625;AN=8;AO=104;CIGAR=1X4M;DP=128;DPB=128;DPRA=0;EPP=228.843;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1.5;MQM=59.6154;MQMR=60;NS=4;NUMALT=2;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4106;QR=781;RO=20;RPL=0;RPP=228.843;RPPR=46.4397;RPR=104;RUN=1;SAF=104;SAP=228.843;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:44:7,0,37:7:271:0,37:0,1475:-119.696,-121.803,-144.062,0,-22.6473,-11.5092 0|1:29:6,0,22:6:234:0,22:0,883:-71.1534,-72.9596,-92.1942,0,-19.4146,-12.792 0|1:37:7,3,27:7:276:3,27:113,1062:-85.2335,-78.0829,-99.8888,0,-13.4668,-14.5932 1|1:18:0,0,18:0:0:0,18:0,686:-62.0591,-62.0591,-62.0591,-5.41854,-5.41854,0 dDocent_Contig_11389 92 . A T 153.651 . AB=0.368421;ABP=5.8675;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1M2D3M1X;DP=61;DPB=59;DPRA=1.35714;EPP=18.2106;EPPR=120.27;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=246;QR=1871;RO=54;RPL=7;RPP=18.2106;RPPR=120.27;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:19:12,7:12:414:7:246:-16.7628,0,-31.8718 0|0:20:20,0:20:696:0:0:0,-6.0206,-62.9642 0|0:2:2,0:2:70:0:0:0,-0.60206,-6.6474 0|0:20:20,0:20:691:0:0:0,-6.0206,-62.5127 dDocent_Contig_11392 172 . A T 190.018 . AB=0.333333;ABP=9.52472;AC=3;AF=0.5;AN=6;AO=9;CIGAR=1X;DP=27;DPB=27;DPRA=0;EPP=22.5536;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=350;QR=734;RO=18;RPL=9;RPP=22.5536;RPPR=42.0968;RPR=0;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=42.0968;SRR=18;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:5,5:5:204:5:188:-14.2697,0,-15.7337 0/1:12:10,2:10:408:2:82:-4.16732,0,-33.4682 0/1:5:3,2:3:122:2:80:-6.08664,0,-9.86734 ./.:.:.:.:.:.:.:. dDocent_Contig_11393 36 . T C 48.2805 . AB=0.138889;ABP=43.7857;AC=2;AF=0.25;AN=8;AO=5;CIGAR=1X;DP=63;DPB=63;DPRA=1.33333;EPP=13.8677;EPPR=112.183;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.931034;PAO=0;PQA=0;PQR=0;PRO=0;QA=203;QR=2320;RO=58;RPL=0;RPP=13.8677;RPPR=128.956;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=56;SRP=112.183;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:12,2:12:484:2:82:-3.56526,0,-39.697 0/1:22:19,3:19:766:3:121:-4.65754,0,-62.6379 0/0:20:20,0:20:811:0:0:0,-6.0206,-73.3056 0/0:7:7,0:7:259:0:0:0,-2.10721,-23.6532 dDocent_Contig_11395 19 . C T 527.455 . AB=0.487179;ABP=3.06598;AC=3;AF=0.375;AN=8;AO=19;CIGAR=1X;DP=65;DPB=65;DPRA=0.5;EPP=44.2683;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.947368;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=764;QR=1827;RO=46;RPL=0;RPP=44.2683;RPPR=102.898;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:26:26,0:26:1031:0:0:0,-7.82678,-93.0736 0/1:12:5,7:5:201:7:283:-22.2308,0,-14.8582 0/1:20:12,8:12:484:8:322:-23.3277,0,-37.8899 0/1:7:3,4:3:111:4:159:-12.5849,0,-8.24453 dDocent_Contig_11396 21 . C A 1436.48 . AB=0.515464;ABP=3.21178;AC=4;AF=0.5;AN=8;AO=50;CIGAR=1X;DP=97;DPB=97;DPRA=0;EPP=111.584;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1986;QR=1897;RO=47;RPL=0;RPP=111.584;RPPR=105.07;RPR=50;RUN=1;SAF=50;SAP=111.584;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:6,15:6:245:15:588:-46.9341,0,-16.1078 0/1:40:17,23:17:691:23:923:-71.3349,0,-50.4772 0/1:29:18,11:18:722:11:434:-30.6821,0,-56.5685 0/1:7:6,1:6:239:1:41:-1.98736,0,-19.776 dDocent_Contig_11398 7 . T C 213.25 . AB=0.229167;ABP=33.5919;AC=2;AF=0.25;AN=8;AO=13;CIGAR=1X;DP=99;DPB=99;DPRA=3.33333;EPP=31.2394;EPPR=189.757;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.230769;PAIREDR=0.953488;PAO=0;PQA=0;PQR=0;PRO=0;QA=505;QR=3245;RO=86;RPL=0;RPP=31.2394;RPPR=189.757;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=86;SRP=189.757;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:19,8:19:736:8:311:-20.2265,0,-58.443 0/0:42:40,2:40:1498:2:78:0,-5.23979,-127.687 0/1:21:18,3:18:665:3:116:-4.49607,0,-53.852 0/0:9:9,0:9:346:0:0:0,-2.70927,-31.4988 dDocent_Contig_11399 23 . A G 62.6979 . AB=0.25;ABP=9.52472;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=33;DPB=33;DPRA=1.71429;EPP=9.52472;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=121;QR=1206;RO=30;RPL=0;RPP=9.52472;RPPR=68.1545;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:9,3:9:367:3:121:-7.66763,0,-29.7829 0/0:12:12,0:12:483:0:0:0,-3.61236,-43.8216 0/0:4:4,0:4:158:0:0:0,-1.20412,-14.5999 0/0:5:5,0:5:198:0:0:0,-1.50515,-18.195 dDocent_Contig_11400 31 . C G 338.192 . AB=0;ABP=0;AC=0;AF=0;AN=8;AO=2;CIGAR=6M1X;DP=135;DPB=144.143;DPRA=1.19048;EPP=7.35324;EPPR=257.073;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0.991453;PAO=0;PQA=0;PQR=0;PRO=0;QA=79;QR=4538;RO=117;RPL=0;RPP=7.35324;RPPR=257.073;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=117;SRP=257.073;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:68:52,16,0:52:1995:16,0:615,0:-35.2161,0,-159.304,-50.8697,-164.12,-214.606 0|0:19:19,0,0:19:731:0,0:0,0:0,-5.71957,-66.1088,-5.71957,-66.1088,-66.1088 0|0:23:23,0,0:23:908:0,0:0,0:0,-6.92369,-82.0315,-6.92369,-82.0315,-82.0315 0|0:25:23,0,2:23:904:0,2:0,79:0,-6.92369,-81.2786,-0.0285055,-74.7779,-74.1758 dDocent_Contig_11401 135 . C T 118.691 . AB=0.8;ABP=6.91895;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X1M1X;DP=26;DPB=26;DPRA=0.714286;EPP=11.6962;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=159;QR=759;RO=22;RPL=0;RPP=11.6962;RPPR=50.7827;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=50.7827;SRR=22;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:5:1,4:1:36:4:159:-13.1872,0,-2.09312 0|0:4:4,0:4:142:0:0:0,-1.20412,-13.1292 0|0:7:7,0:7:229:0:0:0,-2.10721,-20.9283 0|0:10:10,0:10:352:0:0:0,-3.0103,-32.0185 dDocent_Contig_11402 45 . T G 65.3861 . AB=0.139535;ABP=51.5402;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=143;DPB=143;DPRA=1.29;EPP=16.0391;EPPR=300.502;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.927007;PAO=0;PQA=0;PQR=0;PRO=0;QA=228;QR=5372;RO=137;RPL=0;RPP=16.0391;RPPR=300.502;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=137;SRP=300.502;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:43:37,6:37:1450:6:228:-7.93655,0,-117.816 0/0:40:40,0:40:1572:0:0:0,-12.0412,-141.726 0/0:32:32,0:32:1233:0:0:0,-9.63296,-111.25 0/0:28:28,0:28:1117:0:0:0,-8.42884,-100.819 dDocent_Contig_11403 24 . T A 425.696 . AB=0.4375;ABP=4.09604;AC=4;AF=0.5;AN=8;AO=15;CIGAR=1X;DP=39;DPB=39;DPRA=1.83333;EPP=35.5824;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=0.666667;PAIREDR=0.75;PAO=0;PQA=0;PQR=0;PRO=0;QA=605;QR=975;RO=24;RPL=0;RPP=35.5824;RPPR=55.1256;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:6:6,0:6:246:0:0:0,-1.80618,-22.5201 0/1:18:11,7:11:447:7:283:-20.4248,0,-35.1675 0/1:14:7,7:7:282:7:281:-21.4476,0,-21.5382 1/1:1:0,1:0:0:1:41:-4.09457,-0.30103,0 dDocent_Contig_11404 19 . T C 2554.49 . AB=0.494444;ABP=3.05855;AC=4;AF=0.5;AN=8;AO=89;CIGAR=1X2M1X;DP=180;DPB=180;DPRA=0;EPP=196.271;EPPR=196.271;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3505;QR=3549;RO=89;RPL=0;RPP=196.271;RPPR=196.271;RPR=89;RUN=1;SAF=89;SAP=196.271;SAR=0;SRF=89;SRP=196.271;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:55:22,31:22:888:31:1210:-92.9599,0,-64.0073 0|1:61:31,30:31:1224:30:1193:-89.2911,0,-92.0778 0|1:42:22,20:22:881:20:793:-59.0481,0,-66.9579 0|1:22:14,8:14:556:8:309:-21.5476,0,-43.7606 dDocent_Contig_11405 31 . G A 2557.41 . AB=0.556701;ABP=5.71904;AC=5;AF=0.625;AN=8;AO=81;CIGAR=1X;DP=124;DPB=124;DPRA=0;EPP=178.9;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.481481;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3212;QR=1701;RO=43;RPL=0;RPP=178.9;RPPR=96.3836;RPR=81;RUN=1;SAF=81;SAP=178.9;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:33:19,14:19:750:14:534:-38.4609,0,-57.888 0/1:42:14,28:14:553:28:1104:-87.0017,0,-37.4697 0/1:22:10,12:10:398:12:486:-37.4688,0,-29.5571 1/1:27:0,27:0:0:27:1088:-98.2076,-8.12781,0 dDocent_Contig_11406 36 . G A 98.4069 . AB=0.150943;ABP=59.0998;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=2X2M1D4M;DP=71;DPB=70.1111;DPRA=1.47222;EPP=20.3821;EPPR=137.642;GTI=0;LEN=1;MEANALT=1.5;MQM=48;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=321;QR=2371;RO=62;RPL=0;RPP=20.3821;RPPR=137.642;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. 0|1:32:27,5:27:1030:5:204:-8.78553,0,-83.3731 0|1:21:17,3:17:645:3:117:-4.57765,0,-52.2549 0|0:18:18,0:18:696:0:0:0,-5.41854,-62.9711 dDocent_Contig_11408 13 . C T 1615.25 . AB=0.17619;ABP=194.265;AC=1;AF=0.125;AN=8;AO=37;CIGAR=1X6M1X;DP=210;DPB=255.375;DPRA=0;EPP=83.3548;EPPR=168.042;GTI=0;LEN=1;MEANALT=5.5;MQM=60;MQMR=60;NS=4;NUMALT=6;ODDS=0;PAIRED=0.864865;PAIREDR=0.539474;PAO=0;PQA=0;PQR=0;PRO=0;QA=1466;QR=2993;RO=76;RPL=0;RPP=83.3548;RPPR=168.042;RPR=37;RUN=1;SAF=37;SAP=83.3548;SAR=0;SRF=76;SRP=168.042;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:50:19,5,0,5,4,4,13:19:748:5,0,5,4,4,13:200,0,198,159,163,525:-37.5625,-26.807,-86.8326,-43.2821,-88.3378,-104.813,-26.9863,-72.0413,-88.5168,-87.0117,-30.1919,-75.2471,-91.7227,-75.4262,-90.5186,-29.8339,-74.8896,-91.3653,-75.0687,-78.2745,-90.1611,0,-45.0551,-61.5311,-45.2343,-48.4402,-48.0824,-57.6177 0|1:69:25,2,6,0,18,0,15:25:987:2,6,0,18,0,15:80,235,0,708,0,610:-50.7057,-51.6412,-132.253,-38.9082,-113.531,-118.315,-58.2315,-132.855,-120.121,-139.445,0,-74.6217,-61.8885,-81.2119,-75.7934,-58.2315,-132.855,-120.121,-139.445,-81.2119,-139.445,-7.91112,-82.5363,-69.8027,-89.1267,-30.8926,-89.1267,-84.6112 0|0:56:18,3,2,0,10,0,21:18:709:3,2,0,10,0,21:120,73,0,399,0,825:-62.4291,-57.9619,-115.386,-61.886,-110.327,-119.61,-67.8476,-116.289,-120.212,-126.174,-34.9876,-83.4293,-87.353,-93.315,-90.3047,-67.8476,-116.289,-120.212,-126.174,-93.315,-126.174,0,-48.44,-52.3643,-58.3257,-25.4657,-58.3257,-52.0041 0|0:35:14,0,2,6,5,0,7:14:549:0,2,6,5,0,7:0,80,219,200,0,273:-18.2256,-22.44,-67.587,-15.8484,-60.9962,-60.3941,-4.56021,-49.7035,-43.1129,-47.8974,-5.96152,-51.1109,-44.5198,-33.2279,-49.6057,-22.44,-67.587,-60.9962,-49.7035,-51.1109,-67.587,0,-45.1484,-38.5574,-27.2664,-28.6716,-45.1484,-43.0412 dDocent_Contig_11409 9 . G A 83.8046 . AB=0.159091;ABP=47.4268;AC=2;AF=0.25;AN=8;AO=10;CIGAR=1X;DP=90;DPB=90;DPRA=4.66667;EPP=24.725;EPPR=176.728;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.8875;PAO=0;PQA=0;PQR=0;PRO=0;QA=375;QR=3050;RO=80;RPL=0;RPP=24.725;RPPR=176.728;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=80;SRP=176.728;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:40:37,3:37:1425:3:108:0,-1.96627,-118.455 0/1:36:30,6:30:1131:6:228:-10.0472,0,-91.2539 0/0:6:6,0:6:228:0:0:0,-1.80618,-20.8847 0/1:8:7,1:7:266:1:39:-1.48832,0,-21.8928 dDocent_Contig_11410 168 . A T 280.904 . AB=0.470588;ABP=3.13803;AC=4;AF=0.5;AN=8;AO=11;CIGAR=1X;DP=34;DPB=34;DPRA=0.47619;EPP=26.8965;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=395;QR=902;RO=23;RPL=11;RPP=26.8965;RPPR=52.9542;RPR=0;RUN=1;SAF=0;SAP=26.8965;SAR=11;SRF=0;SRP=52.9542;SRR=23;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:14:14,0:14:550:0:0:0,-4.21442,-49.8433 1/1:3:0,3:0:0:3:115:-10.724,-0.90309,0 0/1:6:2,4:2:81:4:153:-12.3345,0,-5.87955 0/1:11:7,4:7:271:4:127:-8.42963,0,-21.4405 dDocent_Contig_11411 17 . T A 447.139 . AB=0.516129;ABP=3.08035;AC=2;AF=0.25;AN=8;AO=16;CIGAR=1X4M;DP=55;DPB=55;DPRA=1.29167;EPP=37.7539;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.972222;PAO=0;PQA=0;PQR=0;PRO=0;QA=624;QR=1404;RO=36;RPL=0;RPP=37.7539;RPPR=81.1833;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:20:9,0,11:9:343:0,11:0,420:-32.1195,-34.8288,-62.9649,0,-28.5172,-25.2059 0|0:21:21,0,0:21:825:0,0:0,0:0,-6.32163,-74.5706,-6.32163,-74.5706,-74.5706 0|1:11:3,3,5:3:116:3,5:92,204:-15.9915,-9.56121,-18.1783,0,-2.23677,-8.0629 0|0:3:3,0,0:3:120:0,0:0,0:0,-0.90309,-11.1879,-0.90309,-11.1879,-11.1879 dDocent_Contig_11412 182 . A T 762.969 . AB=0.490909;ABP=3.04978;AC=3;AF=0.5;AN=6;AO=27;CIGAR=1X;DP=55;DPB=55;DPRA=0;EPP=61.6401;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1081;QR=1096;RO=28;RPL=27;RPP=61.6401;RPPR=63.8115;RPR=0;RUN=1;SAF=0;SAP=61.6401;SAR=27;SRF=0;SRP=63.8115;SRR=28;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 0/1:32:18,14:18:707:14:564:-41.4702,0,-54.3124 0/1:14:7,7:7:280:7:274:-20.8106,0,-21.3573 0/1:9:3,6:3:109:6:243:-19.5389,0,-7.45372 dDocent_Contig_11413 19 . T C 144.106 . AB=0.272727;ABP=7.94546;AC=3;AF=0.5;AN=6;AO=5;CIGAR=1X;DP=25;DPB=25;DPRA=0.541667;EPP=13.8677;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=205;QR=809;RO=20;RPL=0;RPP=13.8677;RPPR=46.4397;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:12:12,0:12:485:0:0:0,-3.61236,-44.0018 0/1:11:8,3:8:324:3:123:-8.15346,0,-26.2175 1/1:2:0,2:0:0:2:82:-7.77968,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_11415 108 . A C 137.907 . AB=0.5;ABP=3.0103;AC=3;AF=0.375;AN=8;AO=24;CIGAR=1X;DP=55;DPB=55;DPRA=0;EPP=55.1256;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=16;MQMR=34.0323;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.516129;PAO=0;PQA=0;PQR=0;PRO=0;QA=825;QR=1025;RO=31;RPL=0;RPP=55.1256;RPPR=70.3259;RPR=24;RUN=1;SAF=0;SAP=55.1256;SAR=24;SRF=0;SRP=70.3259;SRR=31;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:5,5:5:161:5:169:-4.31114,0,-3.05718 0/1:25:11,14:11:372:14:485:-12.8102,0,-17.1895 0/1:9:6,3:6:199:3:103:-1.75336,0,-3.97493 0/0:11:9,2:9:293:2:68:0,-0.377655,-18.5621 dDocent_Contig_11416 11 . T C 105.108 . AB=0.454545;ABP=3.20771;AC=2;AF=0.25;AN=8;AO=7;CIGAR=1X;DP=72;DPB=72;DPRA=0.589744;EPP=18.2106;EPPR=144.156;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=263;QR=2567;RO=65;RPL=0;RPP=18.2106;RPPR=144.156;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=65;SRP=144.156;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:35:33,2:33:1307:2:80:0,-2.94447,-110.309 0/0:26:26,0:26:1033:0:0:0,-7.82678,-93.2652 0/1:8:4,4:4:147:4:143:-10.8075,0,-11.1784 0/1:3:2,1:2:80:1:40:-3.09259,0,-6.68848 dDocent_Contig_11417 118 . A G 652.13 . AB=0.296296;ABP=41.936;AC=4;AF=0.5;AN=8;AO=32;CIGAR=1X;DP=108;DPB=108;DPRA=0;EPP=7.35324;EPPR=40.0396;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.46875;PAIREDR=0.644737;PAO=0;PQA=0;PQR=0;PRO=0;QA=1153;QR=2707;RO=76;RPL=0;RPP=72.4974;RPPR=168.042;RPR=32;RUN=1;SAF=12;SAP=7.35324;SAR=20;SRF=20;SRP=40.0396;SRR=56;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:24,5:24:829:5:167:-6.62536,0,-66.1983 0/1:30:23,7:23:886:7:254:-14.1692,0,-71.0151 0/1:25:14,11:14:488:11:410:-29.7188,0,-36.7157 0/1:24:15,9:15:504:9:322:-22.0976,0,-38.456 dDocent_Contig_11418 27 . G C 547.414 . AB=0.507937;ABP=3.04477;AC=4;AF=0.5;AN=8;AO=32;CIGAR=1X;DP=63;DPB=63;DPRA=0;EPP=72.4974;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=32.7812;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.25;PAIREDR=0.741935;PAO=0;PQA=0;PQR=0;PRO=0;QA=1300;QR=1244;RO=31;RPL=0;RPP=72.4974;RPPR=70.3259;RPR=32;RUN=1;SAF=32;SAP=72.4974;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:9,12:9:362:12:486:-22.3873,0,-26.6229 0/1:34:19,15:19:761:15:613:-30.9208,0,-58.5755 0/1:5:2,3:2:80:3:119:-5.18109,0,-6.08642 0/1:3:1,2:1:41:2:82:-3.64067,0,-3.19148 dDocent_Contig_11419 77 . T C 395.184 . AB=0.354167;ABP=11.8771;AC=4;AF=0.5;AN=8;AO=17;CIGAR=1X;DP=48;DPB=48;DPRA=0;EPP=39.9253;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=654;QR=1002;RO=31;RPL=17;RPP=39.9253;RPPR=70.3259;RPR=0;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:16,4:16:486:4:153:-8.12077,0,-38.0085 0/1:11:8,3:8:283:3:117:-7.59905,0,-22.5 0/1:13:6,7:6:211:7:269:-20.6608,0,-15.4191 0/1:4:1,3:1:22:3:115:-9.52091,0,-0.995812 dDocent_Contig_11420 23 . T C 419.059 . AB=0.571429;ABP=3.94093;AC=4;AF=0.5;AN=8;AO=14;CIGAR=1X;DP=50;DPB=50;DPRA=0.283951;EPP=33.4109;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=561;QR=1455;RO=36;RPL=0;RPP=33.4109;RPPR=81.1833;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:6,10:6:242:10:403:-31.8136,0,-17.341 0/0:27:27,0:27:1094:0:0:0,-8.12781,-98.7447 0/1:5:3,2:3:119:2:80:-6.08664,0,-9.58935 1/1:2:0,2:0:0:2:78:-7.4033,-0.60206,0 dDocent_Contig_11421 196 . T C 935.244 . AB=0.555556;ABP=3.9754;AC=6;AF=0.75;AN=8;AO=33;CIGAR=1X;DP=50;DPB=50;DPRA=0;EPP=74.6689;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1193;QR=619;RO=17;RPL=33;RPP=74.6689;RPPR=39.9253;RPR=0;RUN=1;SAF=0;SAP=74.6689;SAR=33;SRF=0;SRP=39.9253;SRR=17;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:110:-10.2601,-0.90309,0 1/1:11:1,10:1:10:10:364:-32.0989,-2.31133,0 0/1:27:10,17:10:375:17:603:-46.4548,0,-25.9718 0/1:9:6,3:6:234:3:116:-8.10843,0,-18.7218 dDocent_Contig_11422 24 . A G 1116.02 . AB=0.284024;ABP=139.954;AC=3;AF=0.375;AN=8;AO=110;CIGAR=1X;DP=438;DPB=438;DPRA=0;EPP=208.392;EPPR=689.434;GTI=0;LEN=1;MEANALT=1;MQM=28.6727;MQMR=57.189;NS=4;NUMALT=1;ODDS=0;PAIRED=0.0363636;PAIREDR=0.807927;PAO=0;PQA=0;PQR=0;PRO=0;QA=3933;QR=13047;RO=328;RPL=0;RPP=241.872;RPPR=715.253;RPR=110;RUN=1;SAF=4;SAP=208.392;SAR=106;SRF=325;SRP=689.434;SRR=3;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:126:88,38:88:3433:38:1340:-58.2725,0,-251.606 0/0:100:86,14:86:3448:14:499:0,-4.49632,-283.544 0/1:132:96,36:96:3833:36:1308:-27.8379,0,-296.128 0/1:80:58,22:58:2333:22:786:-30.8899,0,-183.689 dDocent_Contig_11423 35 . C T 78.161 . AB=0.157895;ABP=41.6397;AC=2;AF=0.25;AN=8;AO=6;CIGAR=1X;DP=62;DPB=62;DPRA=1.58333;EPP=16.0391;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=243;QR=2268;RO=56;RPL=0;RPP=16.0391;RPPR=124.613;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:17:17,0:17:689:0:0:0,-5.11751,-62.3389 0/0:7:7,0:7:284:0:0:0,-2.10721,-25.9338 0/1:23:20,3:20:808:3:121:-4.35651,0,-66.1127 0/1:15:12,3:12:487:3:122:-6.85704,0,-39.6656 dDocent_Contig_11424 98 . N A 535.188 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=18;CIGAR=1X;DP=18;DPB=18;DPRA=0;EPP=42.0968;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=579;QR=0;RO=0;RPL=18;RPP=42.0968;RPPR=0;RPR=0;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:103:-9.61002,-0.90309,0 1/1:11:0,11:0:0:11:368:-33.4443,-3.31133,0 1/1:4:0,4:0:0:4:108:-9.98709,-1.20412,0 ./.:.:.:.:.:.:.:. dDocent_Contig_11426 14 . C T 32.4277 . AB=0.117647;ABP=46.1843;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=79;DPB=79;DPRA=2.26667;EPP=11.6962;EPPR=165.871;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.986667;PAO=0;PQA=0;PQR=0;PRO=0;QA=161;QR=2982;RO=75;RPL=0;RPP=11.6962;RPPR=165.871;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=75;SRP=165.871;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:34:30,4:30:1162:4:161:-4.64046,0,-94.6242 0/0:19:19,0:19:770:0:0:0,-5.71957,-69.6203 0/0:15:15,0:15:611:0:0:0,-4.51545,-55.3273 0/0:11:11,0:11:439:0:0:0,-3.31133,-39.8648 dDocent_Contig_11427 107 . N C 1137.27 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=36;CIGAR=1X;DP=36;DPB=36;DPRA=0;EPP=81.1833;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1242;QR=0;RO=0;RPL=0;RPP=81.1833;RPPR=0;RPR=36;RUN=1;SAF=0;SAP=81.1833;SAR=36;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:6:0,6:0:0:6:204:-18.6934,-1.80618,0 1/1:26:0,26:0:0:26:898:-81.1359,-7.82678,0 1/1:3:0,3:0:0:3:105:-9.79616,-0.90309,0 1/1:1:0,1:0:0:1:35:-3.49863,-0.30103,0 dDocent_Contig_11428 70 . A G 174.52 . AB=0.466667;ABP=3.15506;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=45;DPB=45;DPRA=1.5;EPP=18.2106;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=259;QR=1295;RO=38;RPL=7;RPP=18.2106;RPPR=85.5263;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:24:24,0:24:846:0:0:0,-7.22472,-76.4578 0/1:15:8,7:8:266:7:259:-19.1507,0,-19.7474 0/0:4:4,0:4:110:0:0:0,-1.20412,-10.1714 0/0:2:2,0:2:73:0:0:0,-0.60206,-6.9313 dDocent_Contig_11430 7 . T G 251.827 . AB=0.3125;ABP=17.6677;AC=3;AF=0.375;AN=8;AO=15;CIGAR=2X;DP=72;DPB=72;DPRA=0.666667;EPP=35.5824;EPPR=126.784;GTI=0;LEN=1;MEANALT=1;MQM=49.3333;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=492;QR=2158;RO=57;RPL=0;RPP=35.5824;RPPR=126.784;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:24:15,9:15:577:9:290:-19.005,0,-45.0481 0|0:24:24,0:24:920:0:0:0,-7.22472,-83.1175 0|1:12:10,2:10:366:2:67:-2.73982,0,-29.6715 0|1:12:8,4:8:295:4:135:-8.81657,0,-23.2881 dDocent_Contig_11431 28 . G T 54.2605 . AB=0.222222;ABP=15.074;AC=3;AF=0.375;AN=8;AO=4;CIGAR=1X;DP=23;DPB=23;DPRA=1.2;EPP=11.6962;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=160;QR=764;RO=19;RPL=0;RPP=11.6962;RPPR=44.2683;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:8,1:8:327:1:41:-1.3853,0,-27.0908 0/1:7:5,2:5:203:2:78:-5.29609,0,-16.5458 0/0:5:5,0:5:196:0:0:0,-1.50515,-18.0132 0/1:2:1,1:1:38:1:41:-3.49251,0,-3.19521 dDocent_Contig_11433 32 . C A 106.445 . AB=0.294118;ABP=9.26925;AC=2;AF=0.25;AN=8;AO=5;CIGAR=1X;DP=42;DPB=42;DPRA=0.68;EPP=13.8677;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.8;PAIREDR=0.783784;PAO=0;PQA=0;PQR=0;PRO=0;QA=204;QR=1499;RO=37;RPL=0;RPP=13.8677;RPPR=83.3548;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:12:12,0:12:485:0:0:0,-3.61236,-43.9996 0/1:2:1,1:1:41:1:41:-3.49251,0,-3.49251 0/1:15:11,4:11:445:4:163:-10.543,0,-35.8906 0/0:13:13,0:13:528:0:0:0,-3.91339,-47.8665 dDocent_Contig_11435 46 . T G 123.247 . AB=0.2;ABP=26.4622;AC=5;AF=0.625;AN=8;AO=7;CIGAR=1X;DP=31;DPB=31;DPRA=0;EPP=18.2106;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=279;QR=954;RO=24;RPL=0;RPP=18.2106;RPPR=55.1256;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:16,2:16:628:2:81:-2.26719,0,-51.4261 0/1:10:7,3:7:286:3:116:-7.80598,0,-23.1045 0/1:2:1,1:1:40:1:41:-3.49251,0,-3.39362 1/1:1:0,1:0:0:1:41:-4.09457,-0.30103,0 dDocent_Contig_11437 53 . T G 76.4298 . AB=0.222222;ABP=9.04217;AC=3;AF=0.5;AN=6;AO=3;CIGAR=1X;DP=16;DPB=16;DPRA=0.833333;EPP=9.52472;EPPR=31.2394;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.666667;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=123;QR=521;RO=13;RPL=3;RPP=9.52472;RPPR=31.2394;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=13;SRP=31.2394;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:6:6,0:6:244:0:0:0,-1.80618,-22.3388 ./.:.:.:.:.:.:.:. 0/1:9:7,2:7:277:2:82:-5.07041,0,-22.5901 1/1:1:0,1:0:0:1:41:-4.09457,-0.30103,0 dDocent_Contig_11438 21 . T A 789.737 . AB=0.439394;ABP=5.11597;AC=4;AF=0.5;AN=8;AO=29;CIGAR=1X;DP=66;DPB=66;DPRA=0;EPP=65.983;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=0.965517;PAIREDR=0.810811;PAO=0;PQA=0;PQR=0;PRO=0;QA=1164;QR=1479;RO=37;RPL=0;RPP=65.983;RPPR=83.3548;RPR=29;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:7,10:7:287:10:407:-31.8729,0,-21.0877 0/1:21:11,10:11:441:10:398:-29.8568,0,-33.7203 0/1:10:7,3:7:262:3:119:-8.08471,0,-20.9162 0/1:18:12,6:12:489:6:240:-16.5573,0,-38.9428 dDocent_Contig_11439 106 . N C 157.268 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=5;CIGAR=2X;DP=5;DPB=5;DPRA=0;EPP=13.8677;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=8.07091;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=171;QR=0;RO=0;RPL=0;RPP=13.8677;RPPR=0;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. 1|1:5:0,5:0:0:5:171:-15.7267,-1.50515,0 .:.:.:.:.:.:.:. dDocent_Contig_11442 98 . N A 203.525 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=6;CIGAR=1X;DP=6;DPB=6;DPRA=0;EPP=16.0391;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=1.69407e-21;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=208;QR=0;RO=0;RPL=6;RPP=16.0391;RPPR=0;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:104:-9.70309,-0.90309,0 1/1:1:0,1:0:0:1:34:-3.39891,-0.30103,0 1/1:2:0,2:0:0:2:70:-6.6474,-0.60206,0 dDocent_Contig_11443 152 . A C 54.6498 . AB=0.230769;ABP=11.1951;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=23;DPB=23;DPRA=2.6;EPP=9.52472;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=57;MQMR=60;NS=3;NUMALT=1;ODDS=8.67362e-19;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=117;QR=647;RO=20;RPL=0;RPP=9.52472;RPPR=46.4397;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=46.4397;SRR=20;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:10,3:10:327:3:117:-6.98749,0,-25.8334 0/0:8:8,0:8:252:0:0:0,-2.40824,-22.9886 0/0:2:2,0:2:68:0:0:0,-0.60206,-6.45788 ./.:.:.:.:.:.:.:. dDocent_Contig_11444 80 . G T 119.048 . AB=0.454545;ABP=3.20771;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=34;DPB=34;DPRA=1.43478;EPP=13.8677;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=184;QR=1111;RO=29;RPL=5;RPP=13.8677;RPPR=65.983;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:11,0:11:423:0:0:0,-3.31133,-38.4235 0/1:11:6,5:6:230:5:184:-13.6038,0,-17.755 0/0:5:5,0:5:195:0:0:0,-1.50515,-17.9242 0/0:7:7,0:7:263:0:0:0,-2.10721,-24.0294 dDocent_Contig_11445 9 . G A 1089.06 . AB=0.519481;ABP=3.26411;AC=4;AF=0.5;AN=8;AO=40;CIGAR=1X;DP=77;DPB=77;DPRA=0;EPP=89.8692;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.8;PAIREDR=0.567568;PAO=0;PQA=0;PQR=0;PRO=0;QA=1534;QR=1424;RO=37;RPL=0;RPP=89.8692;RPPR=83.3548;RPR=40;RUN=1;SAF=40;SAP=89.8692;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:5,5:5:187:5:191:-14.5478,0,-14.1811 0/1:20:15,5:15:577:5:195:-11.9036,0,-46.2505 0/1:29:12,17:12:465:17:652:-50.2846,0,-33.472 0/1:18:5,13:5:195:13:496:-39.568,0,-12.5057 dDocent_Contig_11446 76 . T A 520.442 . AB=0.0681818;ABP=74.2741;AC=0;AF=0;AN=8;AO=3;CIGAR=1M1X1M;DP=48;DPB=44;DPRA=11;EPP=9.52472;EPPR=42.0968;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=102;QR=694;RO=18;RPL=3;RPP=9.52472;RPPR=42.0968;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:23:6,0,16,1:6:232:0,16,1:0,542,36:-42.1102,-43.9164,-62.9849,0,-19.0791,-14.2627,-40.9777,-60.0471,-16.1455,-59.7461 0|0:21:8,5,6,2:8:308:5,6,2:158,195,66:-13.3303,-3.0337,-26.8474,0,-12.6347,-23.518,-10.4014,-23.0205,-19.9922,-35.1159 0|0:2:2,0,0,0:2:77:0,0,0:0,0,0:0,-0.60206,-7.30914,-0.60206,-7.30914,-7.30914,-0.60206,-7.30914,-7.30914,-7.30914 0|0:2:2,0,0,0:2:77:0,0,0:0,0,0:0,-0.60206,-7.30914,-0.60206,-7.30914,-7.30914,-0.60206,-7.30914,-7.30914,-7.30914 dDocent_Contig_11448 11 . G C 452.14 . AB=0.272727;ABP=37.5565;AC=2;AF=0.25;AN=8;AO=25;CIGAR=1X;DP=173;DPB=173;DPRA=0.843537;EPP=57.2971;EPPR=324.388;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.993243;PAO=0;PQA=0;PQR=0;PRO=0;QA=941;QR=5882;RO=148;RPL=0;RPP=57.2971;RPPR=324.388;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=148;SRP=324.388;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:49:49,0:49:1957:0:0:0,-14.7505,-176.328 0/1:44:31,13:31:1220:13:483:-30.556,0,-96.8321 0/1:33:25,8:25:1003:8:307:-18.0552,0,-80.6324 0/0:47:43,4:43:1702:4:151:0,-0.192717,-139.459 dDocent_Contig_11450 25 . G A 699.537 . AB=0.0714286;ABP=70.0157;AC=0;AF=0;AN=8;AO=3;CIGAR=1M1I1X8M1X3M;DP=89;DPB=89.0714;DPRA=0;EPP=9.52472;EPPR=79.0118;GTI=0;LEN=1;MEANALT=4.5;MQM=60;MQMR=60;NS=4;NUMALT=7;ODDS=0;PAIRED=1;PAIREDR=0.971429;PAO=0;PQA=0;PQR=0;PRO=0;QA=84;QR=1356;RO=35;RPL=0;RPP=9.52472;RPPR=79.0118;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:24:11,2,1,1,2,6,0,0:11:433:2,1,1,2,6,0,0:82,6,39,73,221,0,0:-14.7715,-11.3048,-46.3473,-17.8684,-46.7251,-53.1945,-14.8741,-43.7425,-50.2894,-50.2132,-12.1186,-40.9874,-47.5351,-44.5525,-47.1571,0,-28.8781,-35.4302,-32.4439,-29.6894,-33.8445,-18.0828,-46.9494,-53.4955,-50.5142,-47.7591,-35.6507,-53.7209,-18.0828,-46.9494,-53.4955,-50.5142,-47.7591,-35.6507,-53.7209,-53.7209 0|0:18:7,1,0,3,7,0,0,0:7:273:1,0,3,7,0,0,0:41,0,120,275,0,0,0:-20.5048,-19.2266,-41.3634,-22.612,-41.6644,-45.0494,-12.7254,-31.7777,-35.163,-34.2599,0,-19.0463,-22.4319,-12.5447,-20.3247,-22.612,-41.6644,-45.0494,-35.163,-22.4319,-45.0494,-22.612,-41.6644,-45.0494,-35.163,-22.4319,-45.0494,-45.0494,-22.612,-41.6644,-45.0494,-35.163,-22.4319,-45.0494,-45.0494,-45.0494 0|0:29:10,5,0,0,3,0,7,4:10:386:5,0,0,3,0,7,4:204,0,0,118,0,262,159:-18.4367,-4.60956,-34.8037,-21.447,-36.3089,-53.1441,-21.447,-36.3089,-53.1441,-53.1441,-11.7404,-26.6016,-43.4375,-43.4375,-42.5344,-21.447,-36.3089,-53.1441,-53.1441,-43.4375,-53.1441,0,-14.8567,-31.6922,-31.6922,-21.9861,-31.6922,-29.585,-8.35471,-23.2159,-40.0523,-40.0523,-30.3454,-40.0523,-18.6009,-38.8481 0|0:18:7,1,2,0,8,0,0,0:7:264:1,2,0,8,0,0,0:34,78,0,313,0,0,0:-23.6386,-22.9924,-44.3178,-19.3334,-38.2066,-40.3598,-25.7458,-44.6188,-40.9618,-47.3743,0,-18.8807,-15.2196,-21.6347,-19.2265,-25.7458,-44.6188,-40.9618,-47.3743,-21.6347,-47.3743,-25.7458,-44.6188,-40.9618,-47.3743,-21.6347,-47.3743,-47.3743,-25.7458,-44.6188,-40.9618,-47.3743,-21.6347,-47.3743,-47.3743,-47.3743 dDocent_Contig_11455 10 . A T 3104.53 . AB=0.0992851;ABP=1758.96;AC=1;AF=0.125;AN=8;AO=125;CIGAR=1X2M1X;DP=1259;DPB=1259;DPRA=0;EPP=274.444;EPPR=2070.25;GTI=0;LEN=1;MEANALT=3.75;MQM=57.296;MQMR=36.8803;NS=4;NUMALT=2;ODDS=0;PAIRED=0.984;PAIREDR=0.446429;PAO=0;PQA=0;PQR=0;PRO=0;QA=4848;QR=37088;RO=952;RPL=0;RPP=274.444;RPPR=2070.25;RPR=125;RUN=1;SAF=125;SAP=274.444;SAR=0;SRF=952;SRP=2070.25;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:454:344,37,70:344:13478:37,70:1439,2791:-126.133,-112.132,-966.781,0,-748.225,-844.719 0|0:359:257,36,59:257:9970:36,59:1414,2365:-116.956,-80.1657,-646.722,0,-463.224,-559.635 0|0:292:231,26,31:231:8978:26,31:1005,1234:-31.9906,-20.533,-482.46,0,-388.75,-460.433 0|1:154:120,26,8:120:4662:26,8:990,317:-42.772,0,-223.326,-52.7999,-205.054,-281.583 dDocent_Contig_11456 1 . N G 165.534 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=3;CIGAR=1X4M;DP=5;DPB=5;DPRA=1.5;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=104;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:3:0,0,3:0:0:0,3:0,104:-9.69941,-9.69941,-9.69941,-0.90309,-0.90309,0 .:.:.:.:.:.:.:. 1|1:2:0,2,0:0:0:2,0:69,0:-6.5513,-0.60206,0,-6.5513,-0.60206,-6.5513 .:.:.:.:.:.:.:. dDocent_Contig_11457 41 . T G 682.344 . AB=0.357143;ABP=12.937;AC=5;AF=0.625;AN=8;AO=25;CIGAR=1X;DP=61;DPB=61;DPRA=0;EPP=57.2971;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.96;PAIREDR=0.861111;PAO=0;PQA=0;PQR=0;PRO=0;QA=989;QR=1426;RO=36;RPL=0;RPP=57.2971;RPPR=81.1833;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:11,7:11:435:7:280:-20.1534,0,-34.0843 1/1:5:0,5:0:0:5:202:-18.5621,-1.50515,0 0/1:24:15,9:15:589:9:356:-25.1769,0,-46.1237 0/1:14:10,4:10:402:4:151:-9.74,0,-32.326 dDocent_Contig_11458 1 . N G 75.9266 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=80;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:80:-7.59157,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_11459 74 . T A 857.675 . AB=0.57377;ABP=5.89373;AC=3;AF=0.375;AN=8;AO=35;CIGAR=1X;DP=68;DPB=68;DPRA=2.90476;EPP=79.0118;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1206;QR=1166;RO=33;RPL=35;RPP=79.0118;RPPR=74.6689;RPR=0;RUN=1;SAF=35;SAP=79.0118;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:6,18:6:215:18:627:-49.5312,0,-12.4745 0/1:24:15,9:15:524:9:301:-20.1898,0,-40.2653 0/1:13:5,8:5:180:8:278:-21.4443,0,-12.6387 0/0:7:7,0:7:247:0:0:0,-2.10721,-22.5734 dDocent_Contig_11460 44 . T C 48.7661 . AB=0.5;ABP=3.0103;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X;DP=38;DPB=38;DPRA=0.352941;EPP=7.35324;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.611111;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=1448;RO=36;RPL=0;RPP=7.35324;RPPR=81.1833;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:9:9,0:9:369:0:0:0,-2.70927,-33.5755 0/1:4:2,2:2:82:2:82:-6.57556,0,-6.57556 0/0:7:7,0:7:283:0:0:0,-2.10721,-25.843 0/0:18:18,0:18:714:0:0:0,-5.41854,-64.5827 dDocent_Contig_11461 11 . C T 1036.44 . AB=0.333333;ABP=8.80089;AC=2;AF=0.25;AN=8;AO=8;CIGAR=1M1X2M1X;DP=62;DPB=58.6;DPRA=0;EPP=20.3821;EPPR=37.7539;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=313;QR=623;RO=16;RPL=0;RPP=20.3821;RPPR=37.7539;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:11:0,3,0,8:0:0:3,0,8:122,0,324:-37.1846,-27.121,-26.2179,-37.1846,-27.121,-37.1846,-10.4694,0,-10.4694,-8.06116 0|0:27:8,12,0,7:8:312:12,0,7:475,0,267:-36.6939,0,-22.037,-39.1021,-25.6493,-64.7468,-17.2074,-3.75329,-42.8498,-40.7426 0|1:15:8,2,3,2:8:311:2,3,2:82,115,82:-7.01904,-2.65459,-27.605,0,-18.7707,-24.6385,-2.65459,-21.4354,-18.7707,-27.605 1|0:9:0,0,5,4:0:0:0,5,4:0,198,163:-30.1443,-30.1443,-30.1443,-13.8543,-13.8543,-12.3492,-16.6919,-16.6919,0,-15.4878 dDocent_Contig_11462 7 . T C 626.509 . AB=0.285714;ABP=19.7617;AC=5;AF=0.625;AN=8;AO=12;CIGAR=1X6M;DP=42;DPB=40.1429;DPRA=0;EPP=29.068;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1.75;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=468;QR=623;RO=16;RPL=0;RPP=29.068;RPPR=37.7539;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:15:5,7,2:5:195:7,2:273,78:-20.9664,0,-13.949,-16.0565,-9.639,-31.4897 1|1:9:0,6,3:0:0:6,3:233,117:-29.1518,-10.0073,-8.20111,-19.5336,0,-18.6305 0|1:14:8,0,6:8:308:0,6:0,234:-17.2167,-19.6249,-44.9104,0,-25.673,-23.8668 0|1:4:3,0,1:3:120:0,1:0,39:-2.69244,-3.59553,-13.4882,0,-10.2848,-9.98378 dDocent_Contig_11463 29 . G A 551.459 . AB=0.0769231;ABP=43.4331;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X2M1X;DP=80;DPB=80;DPRA=0;EPP=7.35324;EPPR=52.9542;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=56;NS=4;NUMALT=3;ODDS=6.93889e-18;PAIRED=0;PAIREDR=0.913043;PAO=0;PQA=0;PQR=0;PRO=0;QA=80;QR=908;RO=23;RPL=0;RPP=7.35324;RPPR=52.9542;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:26:8,0,2,16:8:317:0,2,16:0,80,604:-14.1301,-16.5383,-39.5397,-9.9204,-32.9355,-32.3334,0,-22.9097,-16.3101,-18.0932 0|0:31:14,0,0,17:14:554:0,0,17:0,0,642:-13.1275,-17.3419,-62.6655,-17.3419,-62.6655,-62.6655,0,-45.6046,-45.6046,-40.487 1|0:19:0,3,0,16:0:0:3,0,16:122,0,617:-31.712,-21.8007,-20.8976,-31.712,-21.8007,-31.712,-10.2765,0,-10.2765,-5.46 0|0:4:1,0,0,3:1:37:0,0,3:0,0,116:-3.53781,-3.83884,-6.91596,-3.83884,-6.91596,-6.91596,0,-3.3968,-3.3968,-2.49371 dDocent_Contig_11464 217 . N G 261.955 . 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AB=0.354167;ABP=11.8771;AC=4;AF=0.5;AN=8;AO=17;CIGAR=1X;DP=48;DPB=48;DPRA=0;EPP=39.9253;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.612903;PAO=0;PQA=0;PQR=0;PRO=0;QA=686;QR=1263;RO=31;RPL=0;RPP=39.9253;RPPR=70.3259;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:11,4:11:447:4:164:-10.6344,0,-36.0696 0/1:11:7,4:7:287:4:163:-11.7471,0,-22.8939 0/1:13:8,5:8:326:5:201:-14.5571,0,-25.7965 0/1:9:5,4:5:203:4:158:-11.8906,0,-15.9438 dDocent_Contig_11466 27 . T C 471.159 . AB=0.516129;ABP=3.08035;AC=1;AF=0.125;AN=8;AO=17;CIGAR=1X;DP=64;DPB=64;DPRA=3.57143;EPP=39.9253;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.957447;PAO=0;PQA=0;PQR=0;PRO=0;QA=679;QR=1855;RO=47;RPL=0;RPP=39.9253;RPPR=105.07;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:15,16:15:593:16:639:-48.5137,0,-44.3768 0/0:19:18,1:18:712:1:40:0,-1.72389,-60.414 0/0:11:11,0:11:430:0:0:0,-3.31133,-39.0518 0/0:3:3,0:3:120:0:0:0,-0.90309,-11.1877 dDocent_Contig_11467 68 . A G 2718.88 . 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G A 251.102 . AB=0.194444;ABP=61.3988;AC=3;AF=0.375;AN=8;AO=15;CIGAR=1X;DP=86;DPB=86;DPRA=0;EPP=35.5824;EPPR=157.185;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.6;PAIREDR=0.591549;PAO=0;PQA=0;PQR=0;PRO=0;QA=608;QR=2836;RO=71;RPL=0;RPP=35.5824;RPPR=157.185;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=71;SRP=157.185;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:18,5:18:732:5:204:-11.8203,0,-59.2805 0/1:24:19,5:19:755:5:200:-11.1543,0,-61.0421 0/1:25:21,4:21:847:4:163:-7.53268,0,-69.0151 0/0:14:13,1:13:502:1:41:0,-0.119853,-41.4229 dDocent_Contig_11469 32 . A G 31.5297 . 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AB=0.341463;ABP=11.961;AC=3;AF=0.375;AN=8;AO=14;CIGAR=1X;DP=50;DPB=50;DPRA=1.51852;EPP=33.4109;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=29.4286;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.285714;PAIREDR=0.694444;PAO=0;PQA=0;PQR=0;PRO=0;QA=518;QR=1441;RO=36;RPL=0;RPP=33.4109;RPPR=81.1833;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:5,4:5:200:4:142:-3.36549,0,-15.6698 0/1:5:1,4:1:38:4:156:-8.19845,0,-2.29212 0/1:27:21,6:21:839:6:220:-6.17463,0,-67.695 0/0:9:9,0:9:364:0:0:0,-2.70927,-33.1245 dDocent_Contig_11471 20 . G C 57.2407 . AB=0.16;ABP=28.1125;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=80;DPB=80;DPRA=1.36364;EPP=11.6962;EPPR=168.042;GTI=0;LEN=1;MEANALT=1;MQM=57;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.960526;PAO=0;PQA=0;PQR=0;PRO=0;QA=162;QR=3024;RO=76;RPL=0;RPP=11.6962;RPPR=168.042;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=76;SRP=168.042;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:11,0:11:436:0:0:0,-3.31133,-39.5927 0/1:25:21,4:21:826:4:162:-7.42304,0,-67.1197 0/0:35:35,0:35:1400:0:0:0,-10.536,-126.253 0/0:9:9,0:9:362:0:0:0,-2.70927,-32.9442 dDocent_Contig_11472 88 . A T 144.896 . AB=0.35;ABP=6.91895;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=50;DPB=50;DPRA=2;EPP=18.2106;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.976744;PAO=0;PQA=0;PQR=0;PRO=0;QA=243;QR=1483;RO=43;RPL=7;RPP=18.2106;RPPR=96.3836;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:21:21,0:21:729:0:0:0,-6.32163,-65.9324 0/0:7:7,0:7:243:0:0:0,-2.10721,-22.2089 0/1:20:13,7:13:451:7:243:-16.1883,0,-34.9012 0/0:2:2,0:2:60:0:0:0,-0.60206,-5.69857 dDocent_Contig_11473 36 . G C 64.3582 . AB=0.166667;ABP=26.1727;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=64;DPB=64;DPRA=1.8;EPP=11.6962;EPPR=133.299;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=163;QR=2237;RO=60;RPL=0;RPP=11.6962;RPPR=133.299;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:20,4:20:752:4:163:-7.83371,0,-60.7679 0/0:29:29,0:29:1093:0:0:0,-8.72987,-98.6544 0/0:6:6,0:6:200:0:0:0,-1.80618,-18.3148 0/0:5:5,0:5:192:0:0:0,-1.50515,-17.6487 dDocent_Contig_11475 27 . A G 84.8866 . AB=0;ABP=0;AC=2;AF=0.25;AN=8;AO=10;CIGAR=1X;DP=35;DPB=35;DPRA=2;EPP=24.725;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=13;MQMR=12.52;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=373;QR=990;RO=25;RPL=0;RPP=24.725;RPPR=57.2971;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:10,1:10:391:1:39:0,-2.01236,-10.5151 0/0:5:5,0:5:201:0:0:0,-1.50515,-4.87366 1/1:7:0,7:0:0:7:255:-8.1875,-2.10721,0 0/0:12:10,2:10:398:2:79:0,-1.14422,-9.35353 dDocent_Contig_11476 25 . A G 406.667 . AB=0.298246;ABP=23.1631;AC=3;AF=0.375;AN=8;AO=17;CIGAR=1X;DP=75;DPB=75;DPRA=1.05556;EPP=39.9253;EPPR=112.183;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.5517;NS=4;NUMALT=1;ODDS=0;PAIRED=0.823529;PAIREDR=0.655172;PAO=0;PQA=0;PQR=0;PRO=0;QA=677;QR=2250;RO=58;RPL=0;RPP=39.9253;RPPR=128.956;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=56;SRP=112.183;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:21,2:21:807:2:82:-0.855988,0,-66.0201 0/0:18:18,0:18:700:0:0:0,-5.41854,-63.296 0/1:21:9,12:9:356:12:473:-36.5979,0,-26.076 0/1:13:10,3:10:387:3:122:-7.4591,0,-31.267 dDocent_Contig_11477 43 . A G 1019.41 . AB=0.377551;ABP=15.7732;AC=2;AF=0.25;AN=8;AO=37;CIGAR=1X;DP=130;DPB=130;DPRA=3.0625;EPP=83.3548;EPPR=204.957;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1491;QR=3713;RO=93;RPL=0;RPP=83.3548;RPPR=204.957;RPR=37;RUN=1;SAF=37;SAP=83.3548;SAR=0;SRF=93;SRP=204.957;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:83:50,33:50:2006:33:1328:-94.7955,0,-155.744 0/0:31:31,0:31:1236:0:0:0,-9.33193,-111.514 0/0:1:1,0:1:41:0:0:0,-0.30103,-4.09457 0/1:15:11,4:11:430:4:163:-10.543,0,-34.5362 dDocent_Contig_11478 28 . T C 672.71 . AB=0.5;ABP=3.0103;AC=3;AF=0.375;AN=8;AO=24;CIGAR=1X;DP=55;DPB=55;DPRA=2.28571;EPP=55.1256;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=956;QR=1236;RO=31;RPL=0;RPP=55.1256;RPPR=70.3259;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:4,13:4:164:13:521:-42.1178,0,-10.0324 0/1:23:16,7:16:624:7:286:-19.1911,0,-49.5681 0/0:7:7,0:7:285:0:0:0,-2.10721,-26.0244 0/1:8:4,4:4:163:4:149:-11.36,0,-12.6502 dDocent_Contig_11480 22 . C T 75.6013 . AB=0.266667;ABP=10.1038;AC=2;AF=0.25;AN=8;AO=4;CIGAR=1X;DP=24;DPB=24;DPRA=1.66667;EPP=11.6962;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.85;PAO=0;PQA=0;PQR=0;PRO=0;QA=163;QR=809;RO=20;RPL=0;RPP=11.6962;RPPR=46.4397;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:2:2,0:2:79:0:0:0,-0.60206,-7.49724 0/1:3:1,2:1:41:2:82:-6.87659,0,-3.19148 0/0:7:7,0:7:282:0:0:0,-2.10721,-25.7515 0/1:12:10,2:10:407:2:81:-4.07337,0,-33.378 dDocent_Contig_11481 16 . T G 1398.49 . AB=0.0769231;ABP=43.4331;AC=0;AF=0;AN=8;AO=2;CIGAR=1X3M1X;DP=86;DPB=86;DPRA=0;EPP=7.35324;EPPR=81.1833;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=79;QR=1417;RO=36;RPL=0;RPP=7.35324;RPPR=81.1833;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:26:12,2,12:12:476:2,12:79,477:-35.6602,-32.772,-71.3514,0,-32.6825,-35.5709 0|0:19:13,0,6:13:493:0,6:0,231:-15.4358,-19.3492,-59.7624,0,-40.7961,-38.9899 0|0:24:5,0,19:5:204:0,19:0,752:-60.7733,-62.2785,-79.1124,0,-17.2389,-11.5193 0|0:17:6,0,11:6:244:0,11:0,446:-35.3779,-37.1841,-57.311,0,-20.5326,-17.2213 dDocent_Contig_11482 11 . A G 528.063 . 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AB=0.277778;ABP=10.7311;AC=3;AF=0.375;AN=8;AO=21;CIGAR=1X;DP=44;DPB=44;DPRA=3.4;EPP=48.6112;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=726;QR=777;RO=23;RPL=21;RPP=48.6112;RPPR=52.9542;RPR=0;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:16:0,16:0:0:16:555:-50.2781,-4.81648,0 0/0:4:4,0:4:115:0:0:0,-1.20412,-10.634 0/0:6:6,0:6:209:0:0:0,-1.80618,-19.1511 0/1:18:13,5:13:453:5:171:-10.308,0,-35.6842 dDocent_Contig_11484 13 . C A 478.24 . AB=0.219048;ABP=74.9998;AC=3;AF=0.375;AN=8;AO=24;CIGAR=1X;DP=144;DPB=144;DPRA=0;EPP=55.1256;EPPR=263.587;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=57.15;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=0.916667;PAO=0;PQA=0;PQR=0;PRO=0;QA=950;QR=4784;RO=120;RPL=0;RPP=55.1256;RPPR=263.587;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=120;SRP=263.587;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:54:37,17:37:1458:17:671:-44.4631,0,-108.88 0/1:38:33,5:33:1339:5:198:-6.75712,0,-107.611 0/0:39:38,1:38:1514:1:40:0,-7.74449,-127.541 0/1:13:12,1:12:473:1:41:-0.181177,0,-37.2769 dDocent_Contig_11485 29 . T G 875.744 . AB=0.560976;ABP=4.33437;AC=5;AF=0.625;AN=8;AO=30;CIGAR=1X;DP=48;DPB=48;DPRA=0;EPP=68.1545;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1146;QR=668;RO=18;RPL=0;RPP=68.1545;RPPR=42.0968;RPR=30;RUN=1;SAF=30;SAP=68.1545;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:11,5:11:401:5:188:-12.4648,0,-31.602 0/1:9:1,8:1:40:8:313:-25.8254,0,-1.28641 0/1:16:6,10:6:227:10:375:-29.2841,0,-15.9759 1/1:7:0,7:0:0:7:270:-24.6639,-2.10721,0 dDocent_Contig_11486 19 . G A 713.058 . AB=0.246032;ABP=73.6004;AC=2;AF=0.25;AN=8;AO=31;CIGAR=1X;DP=258;DPB=258;DPRA=0.954545;EPP=70.3259;EPPR=495.935;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1244;QR=8866;RO=227;RPL=0;RPP=70.3259;RPPR=495.935;RPR=31;RUN=1;SAF=31;SAP=70.3259;SAR=0;SRF=227;SRP=495.935;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:107:107,0:107:4208:0:0:0,-32.2102,-378.698 0/1:96:69,27:69:2682:27:1080:-68.5847,0,-212.61 0/0:25:25,0:25:961:0:0:0,-7.52575,-86.7851 0/1:30:26,4:26:1015:4:164:-6.119,0,-82.612 dDocent_Contig_11487 16 . T A 311.921 . AB=0.0666667;ABP=51.9408;AC=2;AF=0.25;AN=8;AO=2;CIGAR=1X1M1X3M1X2M1X3M3X;DP=61;DPB=60.625;DPRA=20;EPP=7.35324;EPPR=68.1545;GTI=0;LEN=1;MEANALT=5;MQM=12;MQMR=60;NS=4;NUMALT=5;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=78;QR=1172;RO=30;RPL=0;RPP=7.35324;RPPR=68.1545;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:30:11,6,5,0,5,2:11:421:6,5,0,5,2:230,195,0,196,78:-14.5789,0,-32.8086,-2.47239,-19.2136,-35.5768,-17.8902,-34.6147,-37.082,-52.4759,-14.0539,-30.7711,-33.2361,-48.6234,-47.1182,-16.3519,-33.0747,-35.5413,-50.9333,-47.0871,-50.3312 0|1:28:16,0,8,2,0,0:16:631:0,8,2,0,0:0,317,80,0,0:-20.0067,-24.8232,-76.7751,0,-52.0366,-49.6284,-23.309,-75.2374,-50.5069,-74.6353,-24.8232,-76.7751,-52.0366,-75.2374,-76.7751,-24.8232,-76.7751,-52.0366,-75.2374,-76.7751,-76.7751 0|0:1:1,0,0,0,0,0:1:40:0,0,0,0,0:0,0,0,0,0:0,-0.30103,-3.99568,-0.30103,-3.99568,-3.99568,-0.30103,-3.99568,-3.99568,-3.99568,-0.30103,-3.99568,-3.99568,-3.99568,-3.99568,-0.30103,-3.99568,-3.99568,-3.99568,-3.99568,-3.99568 0|0:2:2,0,0,0,0,0:2:80:0,0,0,0,0:0,0,0,0,0:0,-0.60206,-7.59179,-0.60206,-7.59179,-7.59179,-0.60206,-7.59179,-7.59179,-7.59179,-0.60206,-7.59179,-7.59179,-7.59179,-7.59179,-0.60206,-7.59179,-7.59179,-7.59179,-7.59179,-7.59179 dDocent_Contig_11488 18 . A T 8406.59 . AB=0.0526316;ABP=135.127;AC=0;AF=0;AN=8;AO=4;CIGAR=2X2M1D1M1X1M1X4M1I4M2X1M3X1M;DP=713;DPB=697.292;DPRA=0;EPP=11.6962;EPPR=246.215;GTI=0;LEN=1;MEANALT=17;MQM=18;MQMR=59.9286;NS=4;NUMALT=6;ODDS=0;PAIRED=0;PAIREDR=0.982143;PAO=0;PQA=0;PQR=0;PRO=0;QA=72;QR=4312;RO=112;RPL=0;RPP=11.6962;RPPR=246.215;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=112;SRP=246.215;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:335:67,0,8,16,0,147,23:67:2580:0,8,16,0,147,23:0,298,634,0,5450,786:-422.046,-442.215,-654.047,-417.823,-629.655,-627.247,-390.028,-601.86,-577.468,-597.044,-442.215,-654.047,-629.655,-601.86,-654.047,0,-211.835,-187.443,-159.647,-211.835,-167.583,-380.125,-591.956,-567.565,-539.77,-591.956,-149.747,-585.032 0|0:259:27,0,3,14,2,119,13:27:1053:0,3,14,2,119,13:0,111,550,66,4310,481:-338.106,-346.234,-432.792,-337.153,-423.711,-422.808,-300.995,-387.553,-378.472,-383.339,-341.438,-427.996,-418.915,-382.757,-427.394,0,-86.563,-77.4817,-41.322,-81.7675,-50.7405,-307.383,-393.941,-384.86,-348.703,-389.145,-47.7115,-390.028 0|0:76:7,4,7,6,8,19,7:7:256:4,7,6,8,19,7:72,269,240,260,726,213:-58.6267,-56.5408,-76.2534,-38.6464,-55.3717,-57.4577,-40.9576,-57.6827,-39.7885,-60.07,-41.6788,-58.4038,-40.5095,-42.8206,-60.1881,-1.1697,-17.899,0,-2.31137,-3.03465,-16.3709,-44.5161,-61.2409,-43.3469,-45.658,-46.3794,-5.87224,-63.3264 0|0:43:11,0,0,0,6,11,2:11:423:0,0,0,6,11,2:0,0,0,198,405,68:-29.2705,-32.5818,-67.3245,-32.5818,-67.3245,-67.3245,-32.5818,-67.3245,-67.3245,-67.3245,-18.1978,-52.9416,-52.9416,-52.9416,-51.1354,0,-34.7557,-34.7557,-34.7557,-20.3734,-31.4444,-27.066,-61.8098,-61.8098,-61.8098,-47.4272,-29.2404,-61.2077 dDocent_Contig_11489 11 . A C 752.705 . AB=0.39726;ABP=9.70319;AC=4;AF=0.5;AN=8;AO=29;CIGAR=1X;DP=73;DPB=73;DPRA=0;EPP=65.983;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=53.1724;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.517241;PAIREDR=0.977273;PAO=0;PQA=0;PQR=0;PRO=0;QA=1172;QR=1767;RO=44;RPL=0;RPP=65.983;RPPR=98.5551;RPR=29;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:18,12:18:718:12:485:-34.6538,0,-55.9143 0/1:24:18,6:18:731:6:244:-15.1141,0,-58.8899 0/1:13:5,8:5:198:8:320:-24.2175,0,-14.2831 0/1:6:3,3:3:120:3:123:-8.68295,0,-9.38113 dDocent_Contig_11490 163 . T C 112.437 . AB=0.125;ABP=12.7819;AC=3;AF=0.5;AN=6;AO=4;CIGAR=1X;DP=16;DPB=16;DPRA=1.1;EPP=11.6962;EPPR=29.068;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=159;QR=466;RO=12;RPL=4;RPP=11.6962;RPPR=29.068;RPR=0;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=29.068;SRR=12;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5,0:5:198:0:0:0,-1.50515,-18.1965 0/1:8:7,1:7:268:1:41:-1.68633,0,-22.0727 1/1:3:0,3:0:0:3:118:-11.0022,-0.90309,0 ./.:.:.:.:.:.:.:. dDocent_Contig_11491 179 . T A 386.366 . AB=0.347826;ABP=12.2627;AC=4;AF=0.5;AN=8;AO=16;CIGAR=1X;DP=46;DPB=46;DPRA=0;EPP=37.7539;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=637;QR=1207;RO=30;RPL=16;RPP=37.7539;RPPR=68.1545;RPR=0;RUN=1;SAF=0;SAP=37.7539;SAR=16;SRF=0;SRP=68.1545;SRR=30;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:9,1:9:362:1:40:-0.985379,0,-29.9334 0/1:19:13,6:13:519:6:246:-16.8005,0,-41.3367 0/1:7:4,3:4:162:3:122:-9.26528,0,-12.8597 0/1:10:4,6:4:164:6:229:-17.9583,0,-12.1396 dDocent_Contig_11492 12 . A T 110.867 . AB=0.555556;ABP=3.25157;AC=2;AF=0.25;AN=8;AO=6;CIGAR=1X;DP=65;DPB=65;DPRA=0.323232;EPP=16.0391;EPPR=131.127;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.833333;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=220;QR=2297;RO=59;RPL=0;RPP=16.0391;RPPR=131.127;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=59;SRP=131.127;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:33:33,0:33:1254:0:0:0,-9.93399,-113.115 0/0:23:22,1:22:882:1:37:0,-3.22586,-75.9878 0/1:5:2,3:2:82:3:109:-8.66285,0,-6.27453 0/1:4:2,2:2:79:2:74:-5.82176,0,-6.29312 dDocent_Contig_11493 10 . A G 342.007 . AB=0.3;ABP=9.95901;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X3M2I2M1I1M1X1M1X2M2X1M2X;DP=59;DPB=60.0588;DPRA=3.33333;EPP=16.0391;EPPR=85.5263;GTI=0;LEN=1;MEANALT=4;MQM=45;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=240;QR=1483;RO=38;RPL=0;RPP=16.0391;RPPR=85.5263;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:21:17,0,4:17:667:0,4:0,163:-8.7368,-13.8543,-68.6957,0,-55.2455,-54.0414 0|0:12:7,0,5:7:269:0,5:0,196:-14.399,-16.5062,-38.5829,0,-22.4651,-20.9599 0|1:20:9,6,3:9:356:6,3:240,123:-16.4628,0,-27.5281,-9.00354,-19.1727,-37.4231 0|0:6:5,0,0:5:191:0,0:0,0:0,-1.50515,-17.2427,-1.50515,-17.2427,-17.2427 dDocent_Contig_11494 81 . C A 206.455 . AB=0.375;ABP=7.35324;AC=3;AF=0.375;AN=8;AO=12;CIGAR=1X;DP=42;DPB=42;DPRA=1.06667;EPP=29.068;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.333333;PAIREDR=0.7;PAO=0;PQA=0;PQR=0;PRO=0;QA=385;QR=998;RO=30;RPL=12;RPP=29.068;RPPR=68.1545;RPR=0;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:15,5:15:507:5:158:-8.51078,0,-39.9308 0/1:8:2,6:2:68:6:192:-15.1855,0,-4.04964 0/0:10:10,0:10:320:0:0:0,-3.0103,-29.1092 0/1:4:3,1:3:103:1:35:-2.29451,0,-8.40585 dDocent_Contig_11495 14 . A C 1258.71 . AB=0.55;ABP=4.74748;AC=4;AF=0.5;AN=8;AO=44;CIGAR=1X;DP=80;DPB=80;DPRA=0;EPP=98.5551;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1733;QR=1450;RO=36;RPL=0;RPP=98.5551;RPPR=81.1833;RPR=44;RUN=1;SAF=44;SAP=98.5551;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:40:26,14:26:1043:14:553:-38.0703,0,-82.1201 0/1:29:7,22:7:284:22:888:-71.4985,0,-17.2039 0/1:4:1,3:1:41:3:123:-10.2607,0,-2.89045 0/1:7:2,5:2:82:5:169:-13.4257,0,-5.67247 dDocent_Contig_11496 10 . A T 83.5705 . AB=0.162162;ABP=39.6906;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1M1X7M;DP=114;DPB=114.667;DPRA=1.6087;EPP=16.0391;EPPR=224.5;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.872549;PAO=0;PQA=0;PQR=0;PRO=0;QA=231;QR=3991;RO=102;RPL=0;RPP=16.0391;RPPR=224.5;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=102;SRP=224.5;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:31:28,3,0:28:1090:3,0:96,0:0,-1.21443,-90.2793,-8.42884,-91.1824,-98.0973 0|1:37:31,0,6:31:1217:0,6:0,231:-10.0167,-19.3486,-119.446,0,-100.483,-98.6768 0|0:15:15,0,0:15:586:0,0:0,0:0,-4.51545,-53.0805,-4.51545,-53.0805,-53.0805 0|0:31:28,3,0:28:1098:3,0:117,0:-1.57845,0,-89.7841,-10.0073,-90.6872,-100.305 dDocent_Contig_11500 7 . T A 3079.26 . AB=0.704698;ABP=57.2388;AC=4;AF=0.5;AN=8;AO=105;CIGAR=1X;DP=149;DPB=149;DPRA=0;EPP=231.015;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=58.5714;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4027;QR=1690;RO=44;RPL=0;RPP=231.015;RPPR=98.5551;RPR=105;RUN=1;SAF=105;SAP=231.015;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:43:7,36:7:271:36:1378:-107.895,0,-11.812 0/1:54:14,40:14:533:40:1545:-123.049,0,-32.0586 0/1:34:11,23:11:420:23:871:-68.4624,0,-27.9168 0/1:18:12,6:12:466:6:233:-15.9183,0,-36.8736 dDocent_Contig_11501 53 . C T 108.259 . AB=0.1875;ABP=30.1537;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=99;DPB=99;DPRA=1.43284;EPP=16.0391;EPPR=204.957;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=242;QR=3268;RO=93;RPL=6;RPP=16.0391;RPPR=204.957;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=93;SRP=204.957;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:21:21,0:21:685:0:0:0,-6.32163,-61.9473 0/0:44:44,0:44:1613:0:0:0,-13.2453,-145.429 0/1:32:26,6:26:901:6:242:-12.5246,0,-71.7496 0/0:2:2,0:2:69:0:0:0,-0.60206,-6.55228 dDocent_Contig_11503 10 . T A 51.8462 . AB=0.666667;ABP=3.73412;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=45;DPB=45;DPRA=1.8125;EPP=9.52472;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.52381;PAO=0;PQA=0;PQR=0;PRO=0;QA=123;QR=1657;RO=42;RPL=0;RPP=9.52472;RPPR=94.2121;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:12:12,0:12:486:0:0:0,-3.61236,-44.0907 0/0:26:25,1:25:971:1:41:0,-3.73221,-83.5857 0/1:3:1,2:1:41:2:82:-6.87659,0,-3.19148 0/0:4:4,0:4:159:0:0:0,-1.20412,-14.6917 dDocent_Contig_11505 28 . A G 924.605 . AB=0.820513;ABP=37.8095;AC=2;AF=0.333333;AN=6;AO=32;CIGAR=1X;DP=50;DPB=50;DPRA=1.77273;EPP=72.4974;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1189;QR=682;RO=18;RPL=0;RPP=72.4974;RPPR=42.0968;RPR=32;RUN=1;SAF=32;SAP=72.4974;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:11,0:11:410:0:0:0,-3.31133,-37.2441 ./.:.:.:.:.:.:.:. 0/1:33:6,27:6:233:27:1028:-82.8814,0,-11.4054 0/1:6:1,5:1:39:5:161:-12.998,0,-2.09038 dDocent_Contig_11507 109 . G A 217.461 . AB=0.387097;ABP=6.44263;AC=3;AF=0.5;AN=6;AO=12;CIGAR=1X;DP=31;DPB=31;DPRA=0;EPP=29.068;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=396;QR=654;RO=19;RPL=0;RPP=29.068;RPPR=44.2683;RPR=12;RUN=1;SAF=0;SAP=29.068;SAR=12;SRF=0;SRP=44.2683;SRR=19;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:8,6:8:270:6:201:-14.2038,0,-20.4142 ./.:.:.:.:.:.:.:. 0/1:13:9,4:9:314:4:135:-8.57019,0,-24.6845 0/1:4:2,2:2:70:2:60:-4.49445,0,-5.44328 dDocent_Contig_11508 31 . A T 432.129 . AB=0.25641;ABP=23.1103;AC=2;AF=0.25;AN=8;AO=10;CIGAR=1X2M2X1M1X;DP=40;DPB=40;DPRA=13;EPP=24.725;EPPR=31.2394;GTI=0;LEN=1;MEANALT=3;MQM=53.1;MQMR=60;NS=4;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=386;QR=495;RO=13;RPL=0;RPP=24.725;RPPR=31.2394;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=13;SRP=31.2394;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:18:6,8,4,0,0:6:226:8,4,0,0:308,153,0,0:-23.3558,0,-16.1057,-12.6071,-5.95652,-29.9177,-25.162,-18.514,-31.1218,-43.6774,-25.162,-18.514,-31.1218,-43.6774,-43.6774 0|0:18:7,1,0,7,2:7:269:1,0,7,2:39,0,252,79:-18.435,-17.3436,-39.131,-20.5422,-39.432,-42.6296,0,-18.8816,-22.0787,-19.9715,-14.0359,-32.9284,-36.1263,-15.5758,-35.5242 0|0:1:0,0,0,0,0:0:0:0,0,0,0:0,0,0,0:0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 1|0:3:0,1,0,1,0:0:0:1,0,1,0:39,0,40,0:-6.50147,-3.305,-3.00397,-6.50147,-3.305,-6.50147,-3.20126,0,-3.20126,-2.90023,-6.50147,-3.305,-6.50147,-3.20126,-6.50147 dDocent_Contig_11509 40 . G A 227.824 . AB=0.24;ABP=32.3686;AC=4;AF=0.5;AN=8;AO=12;CIGAR=1X;DP=50;DPB=50;DPRA=0;EPP=29.068;EPPR=69.0688;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.75;PAIREDR=0.763158;PAO=0;PQA=0;PQR=0;PRO=0;QA=485;QR=1518;RO=38;RPL=0;RPP=29.068;RPPR=85.5263;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=36;SRP=69.0688;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:7,2:7:282:2:81:-4.97646,0,-23.0433 0/1:16:14,2:14:553:2:82:-2.9632,0,-45.2937 0/1:18:12,6:12:486:6:240:-16.5564,0,-38.6731 0/1:7:5,2:5:197:2:82:-5.67247,0,-15.9976 dDocent_Contig_11510 43 . C A 133.494 . AB=0.26087;ABP=14.4341;AC=2;AF=0.25;AN=8;AO=6;CIGAR=1X;DP=25;DPB=25;DPRA=11.5;EPP=16.0391;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=244;QR=772;RO=19;RPL=0;RPP=16.0391;RPPR=44.2683;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:1:1,0:1:41:0:0:0,-0.30103,-4.09457 0/0:1:1,0:1:40:0:0:0,-0.30103,-3.99568 0/1:11:10,1:10:408:1:41:-0.783237,0,-33.7693 0/1:12:7,5:7:283:5:203:-15.0407,0,-22.231 dDocent_Contig_11511 34 . T G 430.561 . AB=0.352941;ABP=12.5903;AC=3;AF=0.375;AN=8;AO=18;CIGAR=1X3M1X;DP=74;DPB=74;DPRA=0.73913;EPP=42.0968;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=58.6111;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.781818;PAO=0;PQA=0;PQR=0;PRO=0;QA=697;QR=2081;RO=55;RPL=0;RPP=42.0968;RPPR=122.441;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:23:22,0:22:840:0:0:0,-6.62266,-75.5126 0|1:8:4,4:4:154:4:156:-12.0089,0,-11.8254 0|1:26:17,9:17:637:9:347:-23.7307,0,-49.8246 0|1:17:12,5:12:450:5:194:-12.7145,0,-35.7255 dDocent_Contig_11512 43 . T C 506.463 . AB=0.338983;ABP=16.2968;AC=3;AF=0.375;AN=8;AO=20;CIGAR=1X;DP=63;DPB=63;DPRA=4.91667;EPP=46.4397;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=807;QR=1715;RO=43;RPL=0;RPP=46.4397;RPPR=96.3836;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:23,5:23:914:5:203:-10.224,0,-74.1383 0/1:25:15,10:15:599:10:404:-29.1941,0,-46.7209 0/1:6:1,5:1:41:5:200:-16.5735,0,-2.28839 0/0:4:4,0:4:161:0:0:0,-1.20412,-14.8755 dDocent_Contig_11513 16 . T A 606.978 . AB=0.478261;ABP=3.19912;AC=3;AF=0.375;AN=8;AO=22;CIGAR=1X;DP=48;DPB=48;DPRA=7.66667;EPP=50.7827;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.818182;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=870;QR=1044;RO=26;RPL=0;RPP=50.7827;RPPR=59.4686;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:2:2,0:2:82:0:0:0,-0.60206,-7.77968 0/1:29:16,13:16:642:13:517:-38.1462,0,-49.3826 0/1:10:7,3:7:284:3:121:-8.2699,0,-22.9231 0/1:7:1,6:1:36:6:232:-19.1381,0,-1.49106 dDocent_Contig_11514 27 . G A 320.387 . AB=0.263158;ABP=30.7823;AC=3;AF=0.375;AN=8;AO=15;CIGAR=1X;DP=93;DPB=93;DPRA=0.527778;EPP=35.5824;EPPR=172.385;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.987179;PAO=0;PQA=0;PQR=0;PRO=0;QA=574;QR=3092;RO=78;RPL=0;RPP=35.5824;RPPR=172.385;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=78;SRP=172.385;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:12,1:12:479:1:41:-0.181177,0,-39.5475 0/1:25:17,8:17:673:8:311:-20.8234,0,-53.3759 0/0:36:36,0:36:1428:0:0:0,-10.8371,-128.77 0/1:19:13,6:13:512:6:222:-14.6116,0,-40.7047 dDocent_Contig_11516 132 . G C 203.609 . AB=0.289474;ABP=17.6392;AC=2;AF=0.25;AN=8;AO=13;CIGAR=1X;DP=67;DPB=67;DPRA=7.11111;EPP=31.2394;EPPR=118.098;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=453;QR=1704;RO=53;RPL=0;RPP=31.2394;RPPR=118.098;RPR=13;RUN=1;SAF=0;SAP=31.2394;SAR=13;SRF=0;SRP=118.098;SRR=53;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:26:23,2:23:662:2:70:0,-1.04164,-53.2871 0/1:24:15,9:15:518:9:314:-21.3732,0,-39.7235 0/1:14:12,2:12:419:2:69:-2.33824,0,-33.8301 0/0:3:3,0:3:105:0:0:0,-0.90309,-9.79616 dDocent_Contig_11518 89 . A T 71.2852 . AB=0.1875;ABP=43.7254;AC=4;AF=0.5;AN=8;AO=9;CIGAR=1X;DP=48;DPB=48;DPRA=0;EPP=22.5536;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=306;QR=1263;RO=39;RPL=9;RPP=22.5536;RPPR=87.6977;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:26,5:26:843:5:172:-6.48654,0,-66.8433 0/1:12:10,2:10:318:2:65:-2.56109,0,-25.3181 0/1:3:2,1:2:68:1:34:-2.49582,0,-5.55484 0/1:2:1,1:1:34:1:35:-2.89657,0,-2.79685 dDocent_Contig_11520 21 . T C 718.746 . AB=0.0666667;ABP=223.198;AC=4;AF=0.5;AN=8;AO=9;CIGAR=1X1M1X7M1X3M;DP=135;DPB=135;DPRA=0;EPP=22.5536;EPPR=109.412;GTI=0;LEN=1;MEANALT=6.5;MQM=47.5556;MQMR=60;NS=4;NUMALT=6;ODDS=0;PAIRED=0.222222;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=360;QR=1852;RO=49;RPL=0;RPP=22.5536;RPPR=109.412;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:29:10,2,4,3,1,4,4:10:380:2,4,3,1,4,4:81,154,108,29,154,160:-9.74304,-6.06844,-36.638,-1.73664,-26.2228,-31.701,-4.75391,-29.2397,-24.906,-35.0188,-10.7204,-35.2057,-30.8713,-33.8879,-41.5866,-0.152351,-24.6425,-20.3086,-23.3255,-29.2914,-30.1214,0,-24.4906,-20.1565,-23.1735,-29.1395,-18.5756,-29.9695 0|1:43:12,4,4,2,16,0,1:12:454:4,4,2,16,0,1:155,152,75,549,0,40:-39.2992,-30.1718,-66.1984,-36.2677,-60.7559,-72.2866,-36.9938,-61.4857,-67.5749,-73.6199,0,-24.4973,-30.5975,-31.3185,-32.4185,-42.9115,-67.4026,-73.4908,-74.2219,-37.2349,-80.1384,-39.6142,-64.1059,-70.1946,-70.9254,-33.938,-76.842,-76.541 0|1:48:21,8,3,0,11,1,2:21:787:8,3,0,11,1,2:319,117,0,322,40,80:-19.9741,0,-62.0757,-16.6785,-54.8695,-80.2467,-26.2958,-64.484,-81.1498,-90.7629,-3.39776,-41.5666,-58.2301,-67.8418,-64.5304,-23.0136,-61.2027,-77.8688,-87.4821,-64.5614,-87.1811,-19.9559,-58.1458,-74.8122,-84.4255,-61.5054,-81.1447,-83.8235 0|1:15:6,0,0,1,5,0,2:6:231:0,0,1,5,0,2:0,0,36,162,0,80:-10.184,-11.9902,-30.9898,-11.9902,-30.9898,-30.9898,-9.31836,-28.322,-28.322,-28.021,0,-19.0165,-19.0165,-16.3507,-17.5113,-11.9902,-30.9898,-30.9898,-28.322,-19.0165,-30.9898,-5.62979,-24.6459,-24.6459,-21.9775,-12.6718,-24.6459,-24.0438 dDocent_Contig_11521 29 . C A 1421.99 . AB=0.746032;ABP=36.1339;AC=4;AF=0.5;AN=8;AO=47;CIGAR=2X;DP=63;DPB=63;DPRA=0;EPP=105.07;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1857;QR=626;RO=16;RPL=0;RPP=105.07;RPPR=37.7539;RPR=47;RUN=1;SAF=47;SAP=105.07;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:33:6,27:6:234:27:1056:-85.397,0,-11.4926 0|1:21:7,14:7:273:14:557:-44.1489,0,-18.6128 0|1:6:2,4:2:81:4:162:-13.1608,0,-5.87955 0|1:3:1,2:1:38:2:82:-6.87659,0,-2.89418 dDocent_Contig_11522 75 . C T 59.9094 . AB=0.357143;ABP=5.49198;AC=2;AF=0.25;AN=8;AO=5;CIGAR=1X;DP=36;DPB=36;DPRA=0.636364;EPP=13.8677;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=144;QR=1036;RO=31;RPL=5;RPP=13.8677;RPPR=70.3259;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:8,2:8:278:2:67:-3.35274,0,-22.3477 0/0:12:12,0:12:416:0:0:0,-3.61236,-37.7726 0/0:10:10,0:10:307:0:0:0,-3.0103,-27.9274 0/1:4:1,3:1:35:3:77:-5.97999,0,-2.29451 dDocent_Contig_11523 101 . A T 94.742 . AB=0.8;ABP=6.91895;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=18;DPB=18;DPRA=1.15385;EPP=11.6962;EPPR=33.4109;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=136;QR=490;RO=14;RPL=0;RPP=11.6962;RPPR=33.4109;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=33.4109;SRR=14;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5,0:5:175:0:0:0,-1.50515,-16.0937 0/1:5:1,4:1:35:4:136:-11.0705,0,-1.99348 0/0:7:7,0:7:245:0:0:0,-2.10721,-22.3912 0/0:1:1,0:1:35:0:0:0,-0.30103,-3.49863 dDocent_Contig_11524 19 . T C 655.973 . AB=0.588235;ABP=4.1599;AC=5;AF=0.625;AN=8;AO=20;CIGAR=1X;DP=49;DPB=49;DPRA=0.409091;EPP=46.4397;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=789;QR=1152;RO=29;RPL=0;RPP=46.4397;RPPR=65.983;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:22:22,0:22:867:0:0:0,-6.62266,-78.3385 0/1:17:7,10:7:285:10:394:-30.6997,0,-20.9069 1/1:9:0,9:0:0:9:356:-32.3985,-2.70927,0 1/1:1:0,1:0:0:1:39:-3.89656,-0.30103,0 dDocent_Contig_11525 49 . C T 456.106 . AB=0.5;ABP=3.0103;AC=1;AF=0.125;AN=8;AO=17;CIGAR=1X;DP=89;DPB=89;DPRA=4.23529;EPP=39.9253;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.916667;PAO=0;PQA=0;PQR=0;PRO=0;QA=670;QR=2871;RO=72;RPL=0;RPP=39.9253;RPPR=111.584;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=72;SRP=159.356;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:13:13,0:13:518:0:0:0,-3.91339,-46.9627 0/0:40:39,1:39:1552:1:41:0,-7.94663,-135.82 0/1:32:16,16:16:638:16:629:-47.3095,0,-48.1216 0/0:4:4,0:4:163:0:0:0,-1.20412,-15.0584 dDocent_Contig_11526 41 . C A 260.578 . AB=0.407407;ABP=5.02092;AC=3;AF=0.375;AN=8;AO=11;CIGAR=1X;DP=36;DPB=36;DPRA=1;EPP=26.8965;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=427;QR=983;RO=25;RPL=0;RPP=26.8965;RPPR=57.2971;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:5,5:5:200:5:200:-15.3692,0,-15.3687 0/1:13:8,5:8:302:5:186:-13.1823,0,-23.6122 0/0:9:9,0:9:358:0:0:0,-2.70927,-32.583 0/1:4:3,1:3:123:1:41:-2.89045,0,-10.2607 dDocent_Contig_11527 14 . T C 96.1439 . AB=0.4;ABP=3.87889;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=55;DPB=55;DPRA=0.666667;EPP=11.6962;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=155;QR=2019;RO=51;RPL=0;RPP=11.6962;RPPR=113.755;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:9:9,0:9:354:0:0:0,-2.70927,-32.2145 0/0:13:13,0:13:508:0:0:0,-3.91339,-46.0608 0/0:23:23,0:23:923:0:0:0,-6.92369,-83.3754 0/1:10:6,4:6:234:4:155:-11.3134,0,-18.4145 dDocent_Contig_11528 22 . C T 325.319 . AB=0.317073;ABP=14.9269;AC=2;AF=0.25;AN=8;AO=13;CIGAR=1X;DP=104;DPB=104;DPRA=0.650794;EPP=31.2394;EPPR=200.614;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=528;QR=3662;RO=91;RPL=0;RPP=31.2394;RPPR=200.614;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=91;SRP=200.614;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:44:44,0:44:1776:0:0:0,-13.2453,-160.049 0/1:26:18,8:18:712:8:325:-21.7923,0,-56.5768 0/1:15:10,5:10:405:5:203:-14.1376,0,-32.2946 0/0:19:19,0:19:769:0:0:0,-5.71957,-69.529 dDocent_Contig_11529 58 . T G 1401.92 . AB=0.5;ABP=3.0103;AC=4;AF=0.5;AN=8;AO=51;CIGAR=1X;DP=102;DPB=102;DPRA=0;EPP=113.755;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1966;QR=1820;RO=51;RPL=51;RPP=113.755;RPPR=113.755;RPR=0;RUN=1;SAF=51;SAP=113.755;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:38:26,12:26:926:12:480:-32.1121,0,-72.2068 0/1:24:4,20:4:149:20:763:-61.7578,0,-6.54793 0/1:22:17,5:17:588:5:185:-10.3851,0,-46.6104 0/1:18:4,14:4:157:14:538:-43.335,0,-9.09043 dDocent_Contig_11530 22 . T C 1346.36 . AB=0.790323;ABP=48.4011;AC=3;AF=0.375;AN=8;AO=50;CIGAR=1X;DP=76;DPB=76;DPRA=0;EPP=111.584;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=40.1;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.615385;PAO=0;PQA=0;PQR=0;PRO=0;QA=2015;QR=1039;RO=26;RPL=0;RPP=111.584;RPPR=59.4686;RPR=50;RUN=1;SAF=50;SAP=111.584;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:34:5,29:5:197:29:1169:-85.1848,0,-7.8705 0/1:19:3,16:3:114:16:648:-45.4818,0,-4.90965 0/0:14:13,1:13:533:1:41:0,-0.590832,-44.6923 0/1:9:5,4:5:195:4:157:-9.36684,0,-15.2111 dDocent_Contig_11531 70 . T A 139.476 . AB=0.151515;ABP=72.629;AC=2;AF=0.25;AN=8;AO=10;CIGAR=1X;DP=114;DPB=114;DPRA=1.375;EPP=24.725;EPPR=228.843;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=405;QR=4100;RO=104;RPL=0;RPP=24.725;RPPR=228.843;RPR=10;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=228.843;SRR=104;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:53:45,8:45:1785:8:325:-13.665,0,-144.914 0/0:41:41,0:41:1607:0:0:0,-12.3422,-144.869 0/1:13:11,2:11:430:2:80:-3.67819,0,-35.1394 0/0:7:7,0:7:278:0:0:0,-2.10721,-25.3905 dDocent_Contig_11532 15 . A T 279.335 . AB=0.305556;ABP=14.8328;AC=5;AF=0.625;AN=8;AO=12;CIGAR=1X3M1X;DP=37;DPB=37;DPRA=0;EPP=29.068;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=58.25;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.833333;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=475;QR=1004;RO=25;RPL=0;RPP=29.068;RPPR=57.2971;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:18:13,5:13:519:5:203:-13.2345,0,-41.6383 0|1:16:11,5:11:445:5:202:-13.7454,0,-35.5898 0|1:2:1,1:1:40:1:40:-3.39362,0,-3.39362 1|1:1:0,1:0:0:1:30:-2.94855,-0.30103,0 dDocent_Contig_11533 14 . G A 81.0526 . AB=0.2;ABP=22.5536;AC=2;AF=0.25;AN=8;AO=6;CIGAR=1X;DP=76;DPB=76;DPRA=0.411765;EPP=16.0391;EPPR=155.013;GTI=0;LEN=1;MEANALT=1;MQM=49.1667;MQMR=57.9714;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=245;QR=2785;RO=70;RPL=0;RPP=16.0391;RPPR=155.013;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=70;SRP=155.013;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:10,3:10:401:3:123:-7.42243,0,-32.536 0/0:34:34,0:34:1339:0:0:0,-10.235,-120.582 0/0:17:16,1:16:644:1:40:0,-1.23683,-54.3986 0/1:12:10,2:10:401:2:82:-4.0798,0,-32.8038 dDocent_Contig_11534 132 . C T 54.4942 . AB=0.25;ABP=13.8677;AC=2;AF=0.25;AN=8;AO=5;CIGAR=1X;DP=38;DPB=38;DPRA=1.11111;EPP=13.8677;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.909091;PAO=0;PQA=0;PQR=0;PRO=0;QA=147;QR=1022;RO=33;RPL=0;RPP=13.8677;RPPR=74.6689;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=74.6689;SRR=33;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:8,4:8:233:4:113:-6.83685,0,-17.6443 0/0:8:8,0:8:258:0:0:0,-2.40824,-23.5363 0/0:10:10,0:10:319:0:0:0,-3.0103,-29.0213 0/1:8:7,1:7:212:1:34:-0.990671,0,-16.9709 dDocent_Contig_11535 23 . C T 40.8652 . AB=0.333333;ABP=4.45795;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=47;DPB=47;DPRA=1.04348;EPP=9.52472;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.863636;PAO=0;PQA=0;PQR=0;PRO=0;QA=120;QR=1770;RO=44;RPL=0;RPP=9.52472;RPPR=98.5551;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:17:17,0:17:675:0:0:0,-5.11751,-61.0758 0/0:18:17,1:17:689:1:40:0,-1.42286,-58.3436 0/1:6:4,2:4:163:2:80:-5.78539,0,-13.2522 0/0:6:6,0:6:243:0:0:0,-1.80618,-22.2476 dDocent_Contig_11536 56 . T A 68.4655 . AB=0.5;ABP=3.0103;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=70;DPB=70;DPRA=0.28125;EPP=9.52472;EPPR=148.499;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=111;QR=2490;RO=67;RPL=3;RPP=9.52472;RPPR=148.499;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=67;SRP=148.499;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:47:47,0:47:1752:0:0:0,-14.1484,-157.936 0/0:15:15,0:15:543:0:0:0,-4.51545,-49.1923 0/0:2:2,0:2:79:0:0:0,-0.60206,-7.49763 0/1:6:3,3:3:116:3:111:-8.54524,0,-9.01122 dDocent_Contig_11537 15 . G T 33.7162 . AB=0.222222;ABP=9.04217;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X;DP=53;DPB=53;DPRA=0.613636;EPP=7.35324;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=2017;RO=51;RPL=0;RPP=7.35324;RPPR=113.755;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:16:16,0:16:633:0:0:0,-4.81648,-57.3009 0/1:9:7,2:7:283:2:82:-5.07041,0,-23.1337 0/0:9:9,0:9:332:0:0:0,-2.70927,-30.2184 0/0:19:19,0:19:769:0:0:0,-5.71957,-69.5279 dDocent_Contig_11538 40 . T A 202.201 . AB=0.28125;ABP=16.3106;AC=2;AF=0.25;AN=8;AO=11;CIGAR=1X;DP=65;DPB=65;DPRA=0;EPP=26.8965;EPPR=120.27;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.454545;PAIREDR=0.814815;PAO=0;PQA=0;PQR=0;PRO=0;QA=428;QR=2092;RO=54;RPL=0;RPP=26.8965;RPPR=120.27;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:16:15,1:15:584:1:41:0,-0.721913,-48.7981 0/0:17:16,1:16:612:1:26:0,-2.51768,-52.8144 0/1:22:15,7:15:576:7:282:-19.1305,0,-45.5462 0/1:10:8,2:8:320:2:79:-4.48694,0,-26.157 dDocent_Contig_11539 72 . T C 2865.54 . AB=0.764228;ABP=77.5995;AC=4;AF=0.5;AN=8;AO=94;CIGAR=1X;DP=123;DPB=123;DPRA=0;EPP=207.129;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3649;QR=1123;RO=29;RPL=94;RPP=207.129;RPPR=65.983;RPR=0;RUN=1;SAF=94;SAP=207.129;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:42:11,31:11:423:31:1158:-91.8694,0,-25.7754 0/1:46:6,40:6:229:40:1585:-129.053,0,-7.12812 0/1:24:11,13:11:431:13:513:-39.292,0,-31.9205 0/1:11:1,10:1:40:10:393:-32.4172,0,-0.684349 dDocent_Contig_11541 78 . G A 646.503 . AB=0.685714;ABP=13.4954;AC=2;AF=0.25;AN=8;AO=24;CIGAR=1X;DP=71;DPB=71;DPRA=0.972222;EPP=55.1256;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=866;QR=1774;RO=47;RPL=24;RPP=55.1256;RPPR=105.07;RPR=0;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:32:32,0:32:1218:0:0:0,-9.63296,-109.912 0/1:22:4,18:4:143:18:666:-53.6422,0,-6.59515 0/1:13:7,6:7:271:6:200:-14.406,0,-20.8429 0/0:4:4,0:4:142:0:0:0,-1.20412,-13.1268 dDocent_Contig_11542 8 . T A 474.8 . AB=0.290323;ABP=26.6864;AC=2;AF=0.25;AN=8;AO=18;CIGAR=1X2M1X3M;DP=70;DPB=70;DPRA=2.58333;EPP=42.0968;EPPR=85.5263;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=4;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=705;QR=1483;RO=38;RPL=0;RPP=42.0968;RPPR=85.5263;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:29:16,11,0,0,2:16:623:11,0,0,2:428,0,0,82:-30.3407,0,-47.8734,-35.1571,-51.1847,-86.3584,-35.1571,-51.1847,-86.3584,-86.3584,-28.3858,-44.4143,-79.5889,-79.5889,-78.9868 0|0:29:12,5,3,6,3:12:468:5,3,6,3:199,120,242,118:-16.338,-3.56478,-40.5226,-10.065,-32.1418,-47.6256,0,-22.0767,-28.5779,-36.658,-10.245,-32.3213,-38.8222,-28.7575,-47.8049 0|0:8:8,0,0,0,0:8:314:0,0,0,0:0,0,0,0:0,-2.40824,-28.6256,-2.40824,-28.6256,-28.6256,-2.40824,-28.6256,-28.6256,-28.6256,-2.40824,-28.6256,-28.6256,-28.6256,-28.6256 0|1:4:2,2,0,0,0:2:78:2,0,0,0:78,0,0,0:-6.19918,0,-6.19935,-6.80124,-6.80141,-13.213,-6.80124,-6.80141,-13.213,-13.213,-6.80124,-6.80141,-13.213,-13.213,-13.213 dDocent_Contig_11543 34 . G T 114.01 . AB=0.285714;ABP=11.386;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=71;DPB=71;DPRA=1.26;EPP=16.0391;EPPR=144.156;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.507692;PAO=0;PQA=0;PQR=0;PRO=0;QA=212;QR=2604;RO=65;RPL=0;RPP=16.0391;RPPR=144.156;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=65;SRP=144.156;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:25:25,0:25:1002:0:0:0,-7.52575,-90.4722 0/0:21:21,0:21:858:0:0:0,-6.32163,-77.5284 0/1:21:15,6:15:597:6:212:-13.0999,0,-47.7453 0/0:4:4,0:4:147:0:0:0,-1.20412,-13.5833 dDocent_Contig_11545 21 . T C 2031.42 . AB=0.451128;ABP=5.76954;AC=7;AF=0.875;AN=8;AO=60;CIGAR=1X4M;DP=133;DPB=133;DPRA=0;EPP=133.299;EPPR=81.1833;GTI=0;LEN=1;MEANALT=2.75;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=2.77556e-17;PAIRED=0.95;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2348;QR=1407;RO=36;RPL=0;RPP=133.299;RPPR=81.1833;RPR=60;RUN=1;SAF=60;SAP=133.299;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:33:6,11,0,16:6:237:11,0,16:420,0,631:-65.0603,-32.4139,-48.6053,-66.8665,-51.9166,-86.37,-14.942,0,-34.4492,-29.6327 0|1:49:21,4,2,22:21:817:4,2,22:159,79,860:-64.3777,-57.6073,-123.545,-64.1981,-118.248,-130.737,0,-54.0444,-60.6354,-60.5141 1|1:27:4,6,1,16:4:157:6,1,16:237,41,624:-56.6735,-38.3739,-49.4807,-54.4928,-47.9019,-67.1046,-6.59113,0,-16.1167,-14.6857 1|1:24:5,7,6,6:5:196:7,6,6:270,241,233:-24.4085,-3.74618,-17.7564,-6.04958,0,-20.3631,-6.77284,-0.724382,-3.02692,-21.0846 dDocent_Contig_11546 22 . C T 146.954 . AB=0.473684;ABP=3.12459;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X;DP=61;DPB=61;DPRA=1.35714;EPP=22.5536;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=27;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=338;QR=2082;RO=52;RPL=0;RPP=22.5536;RPPR=115.927;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:10,9:10:402:9:338:-16.0932,0,-30.8205 0/0:31:31,0:31:1241:0:0:0,-9.33193,-111.961 0/0:8:8,0:8:318:0:0:0,-2.40824,-28.9848 0/0:3:3,0:3:121:0:0:0,-0.90309,-11.2802 dDocent_Contig_11547 67 . C T 65.2385 . AB=0.333333;ABP=5.9056;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=41;DPB=41;DPRA=1.24138;EPP=11.6962;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.2703;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.972973;PAO=0;PQA=0;PQR=0;PRO=0;QA=128;QR=1233;RO=37;RPL=4;RPP=11.6962;RPPR=83.3548;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:13:13,0:13:444:0:0:0,-3.91339,-40.0954 0/0:8:8,0:8:250:0:0:0,-2.40824,-22.8049 0/0:8:8,0:8:272:0:0:0,-2.40824,-24.8116 0/1:12:8,4:8:267:4:128:-8.22281,0,-20.744 dDocent_Contig_11548 62 . T G 82.7624 . AB=0.166667;ABP=37.7539;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=81;DPB=81;DPRA=2.4;EPP=16.0391;EPPR=165.871;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.8133;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=0.986667;PAO=0;PQA=0;PQR=0;PRO=0;QA=224;QR=2942;RO=75;RPL=6;RPP=16.0391;RPPR=165.871;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=75;SRP=165.871;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:30,6:30:1185:6:224:-9.67414,0,-96.0918 0/0:33:33,0:33:1290:0:0:0,-9.93399,-116.267 0/0:7:7,0:7:270:0:0:0,-2.10721,-24.6606 0/0:5:5,0:5:197:0:0:0,-1.50515,-18.1049 dDocent_Contig_11549 12 . C T 800.88 . AB=0.380952;ABP=13.3506;AC=4;AF=0.5;AN=8;AO=32;CIGAR=1X;DP=84;DPB=84;DPRA=0;EPP=72.4974;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.9375;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1237;QR=2034;RO=52;RPL=0;RPP=72.4974;RPPR=115.927;RPR=32;RUN=1;SAF=32;SAP=72.4974;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:8,9:8:327:9:338:-25.6499,0,-24.6826 0/1:13:7,6:7:277:6:235:-17.6082,0,-21.386 0/1:31:20,11:20:771:11:432:-29.903,0,-60.3632 0/1:23:17,6:17:659:6:232:-14.3248,0,-52.7065 dDocent_Contig_11550 8 . T C 2240.24 . AB=0.564286;ABP=8.03571;AC=4;AF=0.5;AN=8;AO=79;CIGAR=2X;DP=140;DPB=140;DPRA=0;EPP=174.557;EPPR=135.47;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.8361;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3025;QR=2334;RO=61;RPL=0;RPP=174.557;RPPR=135.47;RPR=79;RUN=1;SAF=79;SAP=174.557;SAR=0;SRF=61;SRP=135.47;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:40:12,28:12:464:28:1074:-84.9251,0,-30.0704 0|1:40:15,25:15:575:25:950:-73.7723,0,-40.0506 0|1:33:22,11:22:854:11:424:-28.5802,0,-67.2484 0|1:27:12,15:12:441:15:577:-44.1447,0,-31.8847 dDocent_Contig_11551 40 . G A 67.8945 . AB=0.139535;ABP=51.5402;AC=2;AF=0.25;AN=8;AO=6;CIGAR=1X;DP=61;DPB=61;DPRA=2.38889;EPP=16.0391;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.618182;PAO=0;PQA=0;PQR=0;PRO=0;QA=232;QR=2151;RO=55;RPL=0;RPP=16.0391;RPPR=122.441;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:15:15,0:15:597:0:0:0,-4.51545,-54.0689 0/1:23:21,2:21:830:2:75:-0.195903,0,-68.0859 0/1:20:16,4:16:602:4:157:-8.48658,0,-48.4853 0/0:3:3,0:3:122:0:0:0,-0.90309,-11.3725 dDocent_Contig_11552 179 . C T 46.5774 . AB=0.5;ABP=3.0103;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=20;DPB=20;DPRA=0.5;EPP=7.35324;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=643;RO=18;RPL=2;RPP=7.35324;RPPR=42.0968;RPR=0;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=42.0968;SRR=18;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:7:7,0:7:233:0:0:0,-2.10721,-21.2884 0/0:9:9,0:9:332:0:0:0,-2.70927,-30.2304 0/1:4:2,2:2:78:2:81:-6.48161,0,-6.19918 ./.:.:.:.:.:.:.:. dDocent_Contig_11553 132 . G A 80.2864 . AB=0.219512;ABP=31.0276;AC=2;AF=0.25;AN=8;AO=12;CIGAR=1X;DP=97;DPB=97;DPRA=0;EPP=29.068;EPPR=187.585;GTI=0;LEN=1;MEANALT=1;MQM=41.75;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=362;QR=3007;RO=85;RPL=0;RPP=29.068;RPPR=187.585;RPR=12;RUN=1;SAF=0;SAP=29.068;SAR=12;SRF=0;SRP=187.585;SRR=85;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:20:19,1:19:671:1:31:0,-2.94182,-57.6343 0/0:36:34,2:34:1185:2:68:0,-4.45751,-100.566 0/1:34:27,7:27:972:7:197:-7.32597,0,-77.5603 0/1:7:5,2:5:179:2:66:-4.09975,0,-14.353 dDocent_Contig_11554 52 . G A 1004.88 . AB=0.431818;ABP=6.56362;AC=4;AF=0.5;AN=8;AO=38;CIGAR=3X;DP=88;DPB=88;DPRA=0;EPP=85.5263;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=0.973684;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1473;QR=1860;RO=50;RPL=38;RPP=85.5263;RPPR=111.584;RPR=0;RUN=1;SAF=38;SAP=85.5263;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:16:7,9:7:260:9:360:-27.9477,0,-18.9386 0|1:36:19,17:19:693:17:646:-47.6278,0,-51.8541 0|1:28:17,11:17:649:11:426:-30.2603,0,-50.3168 0|1:8:7,1:7:258:1:41:-1.68633,0,-21.1625 dDocent_Contig_11555 9 . C T 1006.27 . AB=0.130435;ABP=30.2953;AC=0;AF=0;AN=8;AO=3;CIGAR=1X2M1X3M;DP=71;DPB=71;DPRA=0;EPP=9.52472;EPPR=57.2971;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=56.64;NS=4;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=113;QR=981;RO=25;RPL=0;RPP=9.52472;RPPR=57.2971;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:7:5,1,0,1,0:5:194:1,0,1,0:33,0,41,0:-1.9187,-0.795432,-16.4158,-3.42385,-16.7168,-19.3763,0,-13.3291,-15.9877,-15.6867,-3.42385,-16.7168,-19.3763,-15.9877,-19.3763 0|0:16:7,2,3,2,2:7:276:2,3,2,2:80,114,82,55:-7.22901,-2.7349,-21.6735,0,-12.9397,-18.6363,-2.55407,-15.4969,-12.7599,-21.4941,-5.56242,-18.4856,-15.7511,-18.306,-24.4789 0|0:33:12,0,0,18,2:12:472:0,0,18,2:0,0,721,58:-55.8966,-59.5089,-98.34,-59.5089,-98.34,-98.34,0,-38.9253,-38.9253,-33.5068,-55.4451,-94.2715,-94.2715,-34.8654,-93.6695 0|0:15:1,0,2,12,0:1:39:0,2,12,0:0,80,482,0:-42.7957,-43.0967,-46.3019,-36.5235,-39.7285,-39.1264,-3.37672,-6.5796,0,-2.96724,-43.0967,-46.3019,-39.7285,-6.5796,-46.3019 dDocent_Contig_11556 8 . T C 892.267 . AB=0.375;ABP=16.0391;AC=4;AF=0.5;AN=8;AO=36;CIGAR=1X1M;DP=96;DPB=96;DPRA=0;EPP=81.1833;EPPR=126.784;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1373;QR=2174;RO=57;RPL=0;RPP=81.1833;RPPR=126.784;RPR=36;RUN=1;SAF=36;SAP=81.1833;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:32:15,3,14:15:560:3,14:113,541:-39.9277,-35.1851,-80.1239,0,-36.5854,-41.6314 0|1:28:22,0,6:22:850:0,6:0,234:-13.0023,-19.6249,-89.4356,0,-70.1996,-68.3934 0|1:26:16,0,10:16:613:0,10:0,369:-25.73,-30.5465,-80.8631,0,-50.6908,-47.6805 0|1:10:4,0,6:4:151:0,6:0,229:-17.9646,-19.1687,-31.5436,0,-12.7538,-10.9476 dDocent_Contig_11557 135 . G A 76.5866 . AB=0.428571;ABP=3.32051;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=26;DPB=26;DPRA=1.10526;EPP=9.52472;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=8.67362e-19;PAIRED=0;PAIREDR=0.956522;PAO=0;PQA=0;PQR=0;PRO=0;QA=123;QR=918;RO=23;RPL=0;RPP=9.52472;RPPR=52.9542;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=52.9542;SRR=23;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:8:8,0:8:309:0:0:0,-2.40824,-28.169 0/0:5:5,0:5:205:0:0:0,-1.50515,-18.835 0/0:6:6,0:6:241:0:0:0,-1.80618,-22.0658 0/1:7:4,3:4:163:3:123:-9.35758,0,-12.9512 dDocent_Contig_11558 94 . T C 66.9065 . AB=0.333333;ABP=5.9056;AC=2;AF=0.25;AN=8;AO=4;CIGAR=1X;DP=42;DPB=42;DPRA=0.4;EPP=11.6962;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=144;QR=1343;RO=38;RPL=4;RPP=11.6962;RPPR=85.5263;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:24:24,0:24:854:0:0:0,-7.22472,-77.1809 0/1:9:7,2:7:249:2:72:-4.12745,0,-20.0463 0/0:6:6,0:6:205:0:0:0,-1.80618,-18.7839 0/1:3:1,2:1:35:2:72:-5.93363,0,-2.59554 dDocent_Contig_11561 20 . C T 90.8167 . AB=0.147059;ABP=76.5849;AC=4;AF=0.5;AN=8;AO=10;CIGAR=1X3M1X;DP=68;DPB=68;DPRA=0;EPP=24.725;EPPR=126.784;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=58.193;NS=4;NUMALT=1;ODDS=0;PAIRED=0.2;PAIREDR=0.649123;PAO=0;PQA=0;PQR=0;PRO=0;QA=393;QR=2230;RO=57;RPL=0;RPP=24.725;RPPR=126.784;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:28:25,3:25:998:3:120:-2.75906,0,-81.5682 0|1:18:16,2:16:632:2:79:-2.07909,0,-51.7751 0|1:17:12,4:12:464:4:155:-9.11861,0,-36.75 0|1:5:4,1:4:136:1:39:-2.39141,0,-11.0628 dDocent_Contig_11562 26 . C A 9980.98 . AB=0.287879;ABP=364.133;AC=5;AF=0.625;AN=8;AO=266;CIGAR=1X1M1X3M1X5M1X3M2X2M1X4M1X;DP=924;DPB=923.885;DPRA=0;EPP=580.622;EPPR=74.6689;GTI=0;LEN=1;MEANALT=39.5;MQM=59.7143;MQMR=60;NS=4;NUMALT=6;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=10082;QR=1263;RO=33;RPL=0;RPP=580.622;RPPR=74.6689;RPR=266;RUN=1;SAF=266;SAP=580.622;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:403:8,30,15,118,44,15,3:8:312:30,15,118,44,15,3:1145,559,4480,1724,570,118:-481.015,-389.49,-406.106,-437.669,-369.382,-458.8,-116.124,-47.8368,-96.0155,-106.249,-341.654,-273.367,-321.545,0,-354.055,-436.682,-368.395,-416.573,-95.0287,-320.559,-457.813,-473.738,-405.451,-453.63,-132.085,-357.615,-452.643,-498.482 1|1:276:12,22,25,81,9,21,6:12:462:22,25,81,9,21,6:824,933,3073,349,810,240:-286.754,-222.885,-254.197,-213.986,-184.439,-244.394,-38.4463,-8.89946,0,-51.9972,-261.696,-232.148,-223.249,-47.7094,-296.92,-223.849,-194.302,-185.402,-9.86244,-233.112,-255.461,-270.645,-241.098,-232.199,-56.6591,-279.908,-242.062,-306.773 1|0:146:10,13,4,41,13,4,1:10:373:13,4,41,13,4,1:472,156,1550,513,155,39:-135.708,-100.182,-126.803,-125.895,-117.893,-155.226,-11.6795,-3.67787,-29.3903,-29.872,-96.5053,-88.5033,-114.216,0,-123.127,-125.984,-117.982,-143.695,-29.4797,-114.306,-155.315,-135.519,-127.517,-153.23,-39.0148,-123.841,-153.32,-165.753 1|0:99:3,7,8,26,10,8,7:3:116:7,8,26,10,8,7:269,268,979,392,304,269:-102.017,-80.8371,-88.2584,-81.2312,-68.6765,-88.3514,-22.7108,-10.1558,-10.5514,-24.4127,-70.6818,-58.1269,-58.5213,0,-77.2001,-77.9902,-65.4353,-65.8297,-7.30894,-55.2799,-85.1105,-80.8816,-68.3267,-68.721,-10.2003,-58.1713,-65.4798,-88.3029 dDocent_Contig_11563 19 . G A 237.371 . AB=0.203125;ABP=52.0041;AC=3;AF=0.375;AN=8;AO=13;CIGAR=2X;DP=69;DPB=69;DPRA=4.26667;EPP=31.2394;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.153846;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=525;QR=2159;RO=56;RPL=0;RPP=31.2394;RPPR=124.613;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:19:13,6:13:516:6:244:-16.6193,0,-41.0658 0|1:32:27,5:27:1055:5:202:-8.92912,0,-85.6062 0|1:13:11,2:11:406:2:79:-3.58385,0,-32.9612 0|0:5:5,0:5:182:0:0:0,-1.50515,-16.7293 dDocent_Contig_11564 23 . A G 81.9971 . AB=0.25;ABP=11.6962;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=79;DPB=79;DPRA=0.761905;EPP=11.6962;EPPR=165.871;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.3733;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.573333;PAO=0;PQA=0;PQR=0;PRO=0;QA=156;QR=2998;RO=75;RPL=0;RPP=11.6962;RPPR=165.871;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=75;SRP=165.871;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:12,4:12:489:4:156:-9.59764,0,-39.5448 0/0:36:36,0:36:1448:0:0:0,-10.8371,-128.042 0/0:20:20,0:20:785:0:0:0,-6.0206,-70.9676 0/0:7:7,0:7:276:0:0:0,-2.10721,-25.2073 dDocent_Contig_11565 68 . G A 42.9325 . AB=0.4;ABP=3.44459;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X;DP=21;DPB=21;DPRA=0.9375;EPP=7.35324;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.894737;PAO=0;PQA=0;PQR=0;PRO=0;QA=79;QR=769;RO=19;RPL=2;RPP=7.35324;RPPR=44.2683;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:4:4,0:4:164:0:0:0,-1.20412,-15.1499 0/0:6:6,0:6:243:0:0:0,-1.80618,-22.2482 0/0:6:6,0:6:243:0:0:0,-1.80618,-22.2476 0/1:5:3,2:3:119:2:79:-5.99209,0,-9.59024 dDocent_Contig_11566 9 . C T 40.2368 . AB=0.1875;ABP=16.582;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=81;DPB=81;DPRA=2;EPP=16.0391;EPPR=165.871;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.986667;PAO=0;PQA=0;PQR=0;PRO=0;QA=225;QR=2873;RO=75;RPL=0;RPP=16.0391;RPPR=165.871;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=75;SRP=165.871;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:38:35,3:35:1332:3:112:0,-0.992841,-109.718 0/0:16:16,0:16:616:0:0:0,-4.81648,-55.7793 0/1:16:13,3:13:497:3:113:-5.72249,0,-40.2602 0/0:11:11,0:11:428:0:0:0,-3.31133,-38.8754 dDocent_Contig_11567 199 . T C 242.765 . AB=0.181818;ABP=12.6832;AC=5;AF=0.625;AN=8;AO=6;CIGAR=1X3M;DP=24;DPB=24;DPRA=0.555556;EPP=16.0391;EPPR=33.4109;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=233;QR=521;RO=14;RPL=6;RPP=16.0391;RPPR=33.4109;RPR=0;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=33.4109;SRR=14;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:2:0,0,2:0:0:0,2:0,78:-7.40347,-7.40347,-7.40347,-0.60206,-0.60206,0 0|0:9:9,0,0:9:335:0,0:0,0:0,-2.70927,-30.5025,-2.70927,-30.5025,-30.5025 0|1:11:5,4,2:5:186:4,2:151,77:-10.8664,0,-14.0111,-6.04671,-8.88916,-20.6661 1|1:2:0,0,2:0:0:0,2:0,78:-7.40347,-7.40347,-7.40347,-0.60206,-0.60206,0 dDocent_Contig_11570 11 . T G 138.357 . AB=0.352941;ABP=9.39698;AC=3;AF=0.375;AN=8;AO=12;CIGAR=1X;DP=36;DPB=36;DPRA=5.66667;EPP=29.068;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=25;MQMR=54.7917;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.875;PAO=0;PQA=0;PQR=0;PRO=0;QA=483;QR=963;RO=24;RPL=0;RPP=29.068;RPPR=55.1256;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:2:2,0:2:80:0:0:0,-0.60206,-5.12386 0/1:14:12,2:12:478:2:75:-0.126819,0,-37.337 0/1:8:2,6:2:81:6:245:-11.2737,0,-3.47148 0/1:12:8,4:8:324:4:163:-5.95457,0,-25.9168 dDocent_Contig_11572 1 . N G 71.1989 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=75;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:75:-7.1188,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_11573 58 . C T 41.4963 . AB=0.333333;ABP=4.45795;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X1M1X;DP=24;DPB=24;DPRA=0.666667;EPP=7.35324;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=877;RO=22;RPL=2;RPP=7.35324;RPPR=50.7827;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:8:8,0:8:323:0:0:0,-2.40824,-29.4392 0|0:10:10,0:10:395:0:0:0,-3.0103,-35.9092 0|1:6:4,2:4:159:2:82:-5.9735,0,-12.8856 .:.:.:.:.:.:.:. dDocent_Contig_11575 15 . G T 129.762 . AB=0.416667;ABP=3.73412;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=51;DPB=51;DPRA=0.923077;EPP=13.8677;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.5;PAO=0;PQA=0;PQR=0;PRO=0;QA=199;QR=1803;RO=46;RPL=0;RPP=13.8677;RPPR=102.898;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:22:22,0:22:855:0:0:0,-6.62266,-77.2564 0/0:13:13,0:13:502:0:0:0,-3.91339,-45.5183 0/1:12:7,5:7:284:5:199:-14.6751,0,-22.3211 0/0:4:4,0:4:162:0:0:0,-1.20412,-14.967 dDocent_Contig_11577 56 . G C 155.357 . AB=0;ABP=0;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1X;DP=15;DPB=15;DPRA=0.727273;EPP=11.6962;EPPR=26.8965;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.69407e-21;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=163;QR=441;RO=11;RPL=4;RPP=11.6962;RPPR=26.8965;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=11;SRP=26.8965;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:4:0,4:0:0:4:163:-15.0584,-1.20412,0 0/0:5:5,0:5:202:0:0:0,-1.50515,-18.5619 0/0:6:6,0:6:239:0:0:0,-1.80618,-21.8839 dDocent_Contig_11578 8 . T C 380.901 . AB=0;ABP=0;AC=2;AF=0.25;AN=8;AO=11;CIGAR=1X;DP=33;DPB=33;DPRA=1.5;EPP=26.8965;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=416;QR=849;RO=22;RPL=0;RPP=26.8965;RPPR=50.7827;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:6:6,0:6:233:0:0:0,-1.80618,-21.3401 1/1:11:0,11:0:0:11:416:-37.789,-3.31133,0 0/0:4:4,0:4:154:0:0:0,-1.20412,-14.2336 0/0:12:12,0:12:462:0:0:0,-3.61236,-41.9306 dDocent_Contig_11579 11 . T A 174.6 . AB=0.333333;ABP=8.07707;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=80;DPB=80;DPRA=1.0678;EPP=18.2106;EPPR=161.528;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.780822;PAO=0;PQA=0;PQR=0;PRO=0;QA=279;QR=2913;RO=73;RPL=0;RPP=18.2106;RPPR=161.528;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=73;SRP=161.528;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:40:40,0:40:1600:0:0:0,-12.0412,-144.23 0/0:5:5,0:5:197:0:0:0,-1.50515,-18.1059 0/0:14:14,0:14:566:0:0:0,-4.21442,-51.2822 0/1:21:14,7:14:550:7:279:-19.1589,0,-43.5163 dDocent_Contig_11582 92 . A G 213.504 . AB=0.529412;ABP=3.13803;AC=2;AF=0.25;AN=8;AO=9;CIGAR=1X;DP=47;DPB=47;DPRA=0.566667;EPP=22.5536;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=324;QR=1320;RO=38;RPL=9;RPP=22.5536;RPPR=85.5263;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:3,7:3:103:7:252:-20.0187,0,-6.5993 0/0:20:20,0:20:694:0:0:0,-6.0206,-62.7819 0/1:7:5,2:5:173:2:72:-4.72951,0,-13.8025 0/0:10:10,0:10:350:0:0:0,-3.0103,-31.837 dDocent_Contig_11583 68 . A T 445.497 . AB=0.447368;ABP=3.9246;AC=3;AF=0.375;AN=8;AO=18;CIGAR=1X;DP=54;DPB=54;DPRA=0;EPP=42.0968;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=0.888889;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=696;QR=1427;RO=36;RPL=18;RPP=42.0968;RPPR=81.1833;RPR=0;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:6,10:6:243:10:376:-29.3688,0,-17.4317 0/0:16:15,1:15:590:1:41:0,-0.721913,-49.3458 0/1:11:10,1:10:399:1:40:-0.684349,0,-32.958 0/1:11:5,6:5:195:6:239:-18.5735,0,-14.6105 dDocent_Contig_11584 110 . C T 107.511 . AB=0.32;ABP=10.0459;AC=2;AF=0.25;AN=8;AO=8;CIGAR=1X;DP=30;DPB=30;DPRA=5;EPP=20.3821;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=234;QR=748;RO=22;RPL=0;RPP=20.3821;RPPR=50.7827;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=50.7827;SRR=22;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:1:1,0:1:35:0:0:0,-0.30103,-3.49863 0/0:4:4,0:4:134:0:0:0,-1.20412,-12.3909 0/1:10:8,2:8:278:2:68:-3.44758,0,-22.3477 0/1:15:9,6:9:301:6:166:-10.6969,0,-22.9005 dDocent_Contig_11585 12 . G C 1753.55 . AB=0.278351;ABP=44.4026;AC=2;AF=0.25;AN=8;AO=27;CIGAR=1X2M1X;DP=97;DPB=97;DPRA=0;EPP=61.6401;EPPR=48.6112;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.888889;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1046;QR=816;RO=21;RPL=0;RPP=61.6401;RPPR=48.6112;RPR=27;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:26:6,9,11:6:240:9,11:359,438:-44.0503,-16.2907,-33.3518,-9.79465,0,-26.2535 0|0:31:7,5,19:7:263:5,19:187,772:-61.5922,-48.3949,-68.4253,0,-6.23425,-15.8251 0|0:28:8,7,13:8:313:7,13:277,518:-40.2484,-19.8603,-43.4824,0,-2.93035,-21.8163 1|0:12:0,6,6:0:0:6,6:223,223:-36.862,-18.6165,-16.8103,-18.6168,0,-16.8106 dDocent_Contig_11586 154 . C T 162.636 . AB=0.258065;ABP=18.771;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X;DP=101;DPB=101;DPRA=1.525;EPP=22.5536;EPPR=202.786;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=335;QR=3445;RO=92;RPL=0;RPP=22.5536;RPPR=202.786;RPR=9;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=202.786;SRR=92;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:23,8:23:855:8:296:-17.6615,0,-67.9262 0/0:11:11,0:11:414:0:0:0,-3.31133,-37.6062 0/0:29:29,0:29:1071:0:0:0,-8.72987,-96.6881 0/0:30:29,1:29:1105:1:39:0,-5.13434,-95.8555 dDocent_Contig_11587 44 . T G 45.3246 . AB=0.2;ABP=14.7363;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=49;DPB=49;DPRA=1.32353;EPP=9.52472;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.978261;PAO=0;PQA=0;PQR=0;PRO=0;QA=112;QR=1836;RO=46;RPL=0;RPP=9.52472;RPPR=102.898;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:12,3:12:488:3:112:-5.92984,0,-39.756 0/0:13:13,0:13:523:0:0:0,-3.91339,-47.4135 0/0:20:20,0:20:784:0:0:0,-6.0206,-70.8743 0/0:1:1,0:1:41:0:0:0,-0.30103,-4.09457 dDocent_Contig_11588 58 . C G 532.074 . AB=0.894737;ABP=28.7251;AC=1;AF=0.125;AN=8;AO=18;CIGAR=2X;DP=44;DPB=44;DPRA=3;EPP=42.0968;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.961538;PAO=0;PQA=0;PQR=0;PRO=0;QA=696;QR=1029;RO=26;RPL=18;RPP=42.0968;RPPR=59.4686;RPR=0;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:9:9,0:9:359:0:0:0,-2.70927,-32.6743 0|1:19:2,17:2:82:17:669:-54.8206,0,-2.06011 0|0:14:13,1:13:506:1:27:0,-1.51464,-43.1848 0|0:2:2,0:2:82:0:0:0,-0.60206,-7.77968 dDocent_Contig_11589 59 . C T 63.9848 . AB=0.666667;ABP=3.73412;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X;DP=44;DPB=44;DPRA=0.219512;EPP=7.35324;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=4.33681e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=1658;RO=42;RPL=2;RPP=7.35324;RPPR=94.2121;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:3:1,2:1:19:2:81:-6.78264,0,-0.996876 0/0:10:10,0:10:403:0:0:0,-3.0103,-36.6296 0/0:12:12,0:12:476:0:0:0,-3.61236,-43.1842 0/0:19:19,0:19:760:0:0:0,-5.71957,-68.7213 dDocent_Contig_11590 74 . C G 113.071 . AB=0.225806;ABP=23.254;AC=2;AF=0.25;AN=8;AO=7;CIGAR=1X;DP=61;DPB=61;DPRA=1.03333;EPP=18.2106;EPPR=120.27;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.833333;PAO=0;PQA=0;PQR=0;PRO=0;QA=259;QR=1980;RO=54;RPL=7;RPP=18.2106;RPPR=120.27;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:25:25,0:25:916:0:0:0,-7.52575,-82.7604 0/1:21:16,5:16:587:5:185:-10.6884,0,-46.8441 0/0:5:5,0:5:183:0:0:0,-1.50515,-16.8268 0/1:10:8,2:8:294:2:74:-4.01558,0,-23.8021 dDocent_Contig_11591 42 . C A 315.01 . AB=0.351351;ABP=10.1116;AC=3;AF=0.375;AN=8;AO=13;CIGAR=1X;DP=45;DPB=45;DPRA=1.54167;EPP=31.2394;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.615385;PAIREDR=0.75;PAO=0;PQA=0;PQR=0;PRO=0;QA=521;QR=1279;RO=32;RPL=0;RPP=31.2394;RPPR=72.4974;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:8:8,0:8:320:0:0:0,-2.40824,-29.1661 0/1:21:15,6:15:592:6:242:-15.8353,0,-47.2975 0/1:8:4,4:4:164:4:158:-12.1917,0,-12.7417 0/1:8:5,3:5:203:3:121:-8.87196,0,-16.2448 dDocent_Contig_11592 27 . G A 70.8699 . AB=0.166667;ABP=31.9633;AC=2;AF=0.25;AN=8;AO=6;CIGAR=1X;DP=72;DPB=72;DPRA=3.09524;EPP=16.0391;EPPR=146.327;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=239;QR=2511;RO=66;RPL=0;RPP=16.0391;RPPR=146.327;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=66;SRP=146.327;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:20,2:20:783:2:78:-0.780813,0,-64.1701 0/0:35:34,1:34:1264:1:41:0,-6.44148,-109.934 0/1:8:5,3:5:193:3:120:-8.77945,0,-15.3284 0/0:7:7,0:7:271:0:0:0,-2.10721,-24.7552 dDocent_Contig_11593 18 . T C 42.5505 . AB=0.157895;ABP=22.325;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=38;DPB=38;DPRA=3;EPP=9.52472;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=0.914286;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=1375;RO=35;RPL=0;RPP=9.52472;RPPR=79.0118;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:16,3:16:625:3:122:-5.65292,0,-50.8632 0/0:6:6,0:6:243:0:0:0,-1.80618,-22.2482 0/0:7:7,0:7:270:0:0:0,-2.10721,-24.6636 0/0:6:6,0:6:237:0:0:0,-1.80618,-21.7031 dDocent_Contig_11594 10 . C T 717.92 . AB=0.490196;ABP=3.05288;AC=3;AF=0.375;AN=8;AO=25;CIGAR=1X;DP=57;DPB=57;DPRA=2.83333;EPP=57.2971;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.88;PAIREDR=0.90625;PAO=0;PQA=0;PQR=0;PRO=0;QA=1016;QR=1293;RO=32;RPL=0;RPP=57.2971;RPPR=72.4974;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:15,12:15:612:12:490:-36.3233,0,-47.2893 0/1:12:5,7:5:201:7:284:-22.3214,0,-14.8576 0/1:12:6,6:6:237:6:242:-18.5452,0,-18.0891 0/0:6:6,0:6:243:0:0:0,-1.80618,-22.248 dDocent_Contig_11595 122 . C T 38.3142 . AB=0.25;ABP=9.52472;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=29;DPB=29;DPRA=2.11765;EPP=9.52472;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=98;QR=924;RO=26;RPL=0;RPP=9.52472;RPPR=59.4686;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=59.4686;SRR=26;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:3:3,0:3:106:0:0:0,-0.90309,-9.8891 0/1:12:9,3:9:318:3:98:-5.53015,0,-25.3486 0/0:5:5,0:5:178:0:0:0,-1.50515,-16.3686 0/0:9:9,0:9:322:0:0:0,-2.70927,-29.3242 dDocent_Contig_11596 17 . C A 117.836 . AB=0.0952381;ABP=32.8939;AC=3;AF=0.5;AN=6;AO=5;CIGAR=1X;DP=36;DPB=36;DPRA=1;EPP=13.8677;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.8;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=201;QR=1250;RO=31;RPL=0;RPP=13.8677;RPPR=70.3259;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:121:-11.2802,-0.90309,0 0/1:21:19,2:19:766:2:80:-1.26995,0,-62.94 0/0:12:12,0:12:484:0:0:0,-3.61236,-43.9109 ./.:.:.:.:.:.:.:. dDocent_Contig_11597 86 . T G 722.139 . AB=0.173913;ABP=24.253;AC=0;AF=0;AN=8;AO=4;CIGAR=1X1M2X2M1X;DP=61;DPB=61;DPRA=0;EPP=11.6962;EPPR=57.2971;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=6.93889e-18;PAIRED=0.75;PAIREDR=0.92;PAO=0;PQA=0;PQR=0;PRO=0;QA=134;QR=853;RO=25;RPL=4;RPP=11.6962;RPPR=57.2971;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:18:10,0,0,8:10:334:0,0,8:0,0,278:-19.9386,-22.9489,-49.9811,-22.9489,-49.9811,-49.9811,0,-27.3736,-27.3736,-24.9654 0|0:23:5,4,0,14:5:172:4,0,14:134,0,499:-39.1866,-29.8445,-42.6065,-40.6918,-43.8107,-54.6595,0,-3.12639,-13.9744,-9.76001 0|0:10:7,0,0,3:7:242:0,0,3:0,0,109:-7.15779,-9.265,-28.9176,-9.265,-28.9176,-28.9176,0,-20.0105,-20.0105,-19.1074 0|0:10:3,0,5,2:3:105:0,5,2:0,175,72:-13.3285,-14.2316,-22.7739,0,-8.53723,-7.03208,-8.35388,-16.8971,-2.65841,-16.295 dDocent_Contig_11598 11 . A G 73.578 . AB=0.375;ABP=4.09604;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=48;DPB=48;DPRA=1;EPP=11.6962;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=164;QR=1758;RO=44;RPL=0;RPP=11.6962;RPPR=98.5551;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:18:18,0:18:724:0:0:0,-5.41854,-65.486 0/0:16:15,1:15:602:1:41:0,-0.721913,-50.4243 0/0:6:6,0:6:231:0:0:0,-1.80618,-21.1562 0/1:8:5,3:5:201:3:123:-9.05655,0,-16.0623 dDocent_Contig_11599 22 . C T 122.445 . AB=0.3125;ABP=7.89611;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X3M1X;DP=77;DPB=77;DPRA=0.786885;EPP=13.8677;EPPR=155.013;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0.485714;PAO=0;PQA=0;PQR=0;PRO=0;QA=202;QR=2687;RO=70;RPL=0;RPP=13.8677;RPPR=155.013;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=70;SRP=155.013;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:9:9,0,0:9:351:0,0:0,0:0,-2.70927,-31.9508,-2.70927,-31.9508,-31.9508 0|1:16:9,5,2:9:331:5,2:202,81:-13.9434,0,-25.5195,-9.97325,-20.3387,-36.403 0|0:27:27,0,0:27:1043:0,0:0,0:0,-8.12781,-94.1733,-8.12781,-94.1733,-94.1733 0|0:25:25,0,0:25:962:0,0:0,0:0,-7.52575,-86.885,-7.52575,-86.885,-86.885 dDocent_Contig_11601 20 . G A 401.628 . AB=0.2375;ABP=50.8913;AC=4;AF=0.5;AN=8;AO=19;CIGAR=1X2M1X;DP=80;DPB=80;DPRA=0;EPP=44.2683;EPPR=135.47;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.736842;PAIREDR=0.95082;PAO=0;PQA=0;PQR=0;PRO=0;QA=765;QR=2309;RO=61;RPL=0;RPP=44.2683;RPPR=135.47;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=61;SRP=135.47;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:35:32,3:32:1218:3:121:-0.744147,0,-99.3818 0|1:9:7,2:7:264:2:81:-4.97646,0,-21.4106 0|1:19:14,5:14:521:5:201:-12.7513,0,-41.5096 0|1:17:8,9:8:306:9:362:-27.8268,0,-22.7831 dDocent_Contig_11602 20 . G T 79.4037 . AB=0.208333;ABP=20.744;AC=2;AF=0.25;AN=8;AO=5;CIGAR=1X;DP=41;DPB=41;DPRA=1.41176;EPP=13.8677;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.972222;PAO=0;PQA=0;PQR=0;PRO=0;QA=197;QR=1445;RO=36;RPL=0;RPP=13.8677;RPPR=81.1833;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:14,4:14:561:4:156:-8.99729,0,-45.4149 0/1:6:5,1:5:201:1:41:-2.28839,0,-16.6643 0/0:13:13,0:13:522:0:0:0,-3.91339,-47.3272 0/0:4:4,0:4:161:0:0:0,-1.20412,-14.8753 dDocent_Contig_11603 84 . G C 5683.88 . AB=0.863946;ABP=172.134;AC=5;AF=0.625;AN=8;AO=201;CIGAR=1X;DP=221;DPB=221;DPRA=0;EPP=439.476;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=59.6716;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.99005;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6869;QR=649;RO=20;RPL=201;RPP=439.476;RPPR=46.4397;RPR=0;RUN=1;SAF=201;SAP=439.476;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:66:10,56:10:311:56:1922:-153.393,0,-8.42499 1/1:74:0,74:0:0:74:2538:-227.35,-22.2762,0 0/1:40:5,35:5:173:35:1196:-95.9009,0,-3.86896 0/1:41:5,36:5:165:36:1213:-97.1258,0,-2.83362 dDocent_Contig_11604 1 . N G 1990.87 . AB=0.105263;ABP=28.7251;AC=8;AF=1;AN=8;AO=2;CIGAR=1X4M;DP=72;DPB=72;DPRA=1.05556;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=0;NS=4;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=70;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:22:0,0,22,0:0:0:0,22,0:0,722,0:-65.2879,-65.2879,-65.2879,-6.62266,-6.62266,0,-65.2879,-65.2879,-6.62266,-65.2879 1|1:19:0,0,17,2:0:0:0,17,2:0,568,70:-52.0163,-52.0163,-52.0163,-6.04534,-6.04534,-0.927826,-46.3192,-46.3192,0,-45.7171 1|1:17:0,2,15,0:0:0:2,15,0:67,456,0:-42.2456,-36.8158,-36.2137,-5.76108,0,-1.24563,-42.2456,-36.8158,-5.76108,-42.2456 1|1:14:0,0,14,0:0:0:0,14,0:0,453,0:-41.0814,-41.0814,-41.0814,-4.21442,-4.21442,0,-41.0814,-41.0814,-4.21442,-41.0814 dDocent_Contig_11606 19 . C T 146.625 . AB=0.228571;ABP=25.4075;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=162;DPB=162;DPRA=0.826772;EPP=20.3821;EPPR=337.417;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=295;QR=6109;RO=154;RPL=0;RPP=20.3821;RPPR=337.417;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=154;SRP=337.417;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:29:29,0:29:1158:0:0:0,-8.72987,-104.496 0/0:69:69,0:69:2754:0:0:0,-20.7711,-247.97 0/1:35:27,8:27:1054:8:295:-16.3615,0,-84.6123 0/0:29:29,0:29:1143:0:0:0,-8.72987,-103.152 dDocent_Contig_11608 11 . T A 620.209 . AB=0.309524;ABP=16.2459;AC=3;AF=0.5;AN=6;AO=18;CIGAR=2X2M1X3M;DP=47;DPB=47;DPRA=0;EPP=42.0968;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.888889;PAO=0;PQA=0;PQR=0;PRO=0;QA=715;QR=705;RO=18;RPL=0;RPP=42.0968;RPPR=42.0968;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:30:11,8,11:11:425:8,11:314,433:-32.3058,-9.79323,-42.2819,0,-9.07004,-31.5857 .:.:.:.:.:.:.:. 0|1:12:7,5,0:7:280:5,0:202,0:-14.9495,0,-21.9598,-17.0567,-23.4649,-40.1198 1|1:5:0,5,0:0:0:5,0:199,0:-18.2884,-1.50515,0,-18.2884,-1.50515,-18.2884 dDocent_Contig_11609 59 . G A 263.535 . AB=0.375;ABP=4.09604;AC=5;AF=0.625;AN=8;AO=8;CIGAR=1X;DP=37;DPB=37;DPRA=0.180556;EPP=20.3821;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=322;QR=1150;RO=29;RPL=8;RPP=20.3821;RPPR=65.983;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:4:0,4:0:0:4:159:-14.692,-1.20412,0 0/0:24:24,0:24:950:0:0:0,-7.22472,-85.8012 0/1:8:5,3:5:200:3:122:-8.96425,0,-15.9713 1/1:1:0,1:0:0:1:41:-4.09457,-0.30103,0 dDocent_Contig_11610 79 . G A 753.727 . AB=0.351648;ABP=20.4059;AC=4;AF=0.5;AN=8;AO=32;CIGAR=1X;DP=91;DPB=91;DPRA=0;EPP=72.4974;EPPR=131.127;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1208;QR=2211;RO=59;RPL=32;RPP=72.4974;RPPR=131.127;RPR=0;RUN=1;SAF=32;SAP=72.4974;SAR=0;SRF=59;SRP=131.127;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:16,15:16:573:15:570:-42.3055,0,-42.5588 0/1:33:28,5:28:1075:5:189:-7.44135,0,-87.122 0/1:24:14,10:14:524:10:371:-26.5125,0,-40.2737 0/1:3:1,2:1:39:2:78:-6.50038,0,-2.99347 dDocent_Contig_11612 159 . C T 36.075 . AB=0.333333;ABP=4.45795;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1M1I1M1X;DP=23;DPB=23.6667;DPRA=1.05882;EPP=7.35324;EPPR=40.3389;GTI=0;LEN=1;MEANALT=1;MQM=40;MQMR=41.8095;NS=4;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=76;QR=779;RO=21;RPL=0;RPP=7.35324;RPPR=40.3389;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=48.6112;SRR=21;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:6:4,2:4:155:2:76:-5.00505,0,-11.8205 0|0:8:8,0:8:288:0:0:0,-2.40824,-25.4545 0|0:7:7,0:7:261:0:0:0,-2.10721,-22.9718 0|0:2:2,0:2:75:0:0:0,-0.60206,-6.87341 dDocent_Contig_11613 170 . T C 418.702 . AB=0.424242;ABP=4.65535;AC=5;AF=0.625;AN=8;AO=16;CIGAR=1X;DP=35;DPB=35;DPRA=0;EPP=37.7539;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=609;QR=750;RO=19;RPL=16;RPP=37.7539;RPPR=44.2683;RPR=0;RUN=1;SAF=0;SAP=37.7539;SAR=16;SRF=0;SRP=44.2683;SRR=19;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:8,1:8:320:1:38:-1.088,0,-26.4584 0/1:6:3,3:3:119:3:119:-9.28883,0,-9.28883 0/1:18:8,10:8:311:10:380:-29.1301,0,-22.9349 1/1:2:0,2:0:0:2:72:-6.83591,-0.60206,0 dDocent_Contig_11614 10 . A G 778.08 . AB=0.373134;ABP=12.3768;AC=4;AF=0.5;AN=8;AO=25;CIGAR=1X2M;DP=67;DPB=67;DPRA=0;EPP=57.2971;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=984;QR=1368;RO=35;RPL=0;RPP=57.2971;RPPR=79.0118;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:8:6,0,2:6:240:0,2:0,68:-4.0474,-5.85358,-25.6687,0,-20.1698,-19.5678 0|1:22:12,7,3:12:473:7,3:269,104:-18.4953,0,-36.8435,-13.6685,-30.5098,-51.6845 0|1:18:8,0,10:8:308:0,10:0,407:-31.5721,-33.9803,-59.2566,0,-25.6706,-22.6603 0|1:19:9,0,10:9:347:0,10:0,405:-31.0903,-33.7995,-62.2797,0,-28.8745,-25.8642 dDocent_Contig_11615 7 . T G 35.0446 . AB=0.131579;ABP=47.8112;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=80;DPB=80;DPRA=2.71429;EPP=13.8677;EPPR=165.871;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=181;QR=2858;RO=75;RPL=0;RPP=13.8677;RPPR=165.871;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=75;SRP=165.871;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:21:21,0:21:801:0:0:0,-6.32163,-72.4151 0/1:38:33,5:33:1257:5:181:-5.2033,0,-101.983 0/0:12:12,0:12:458:0:0:0,-3.61236,-41.5695 0/0:9:9,0:9:342:0:0:0,-2.70927,-31.136 dDocent_Contig_11616 1 . N A 3646.71 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=110;CIGAR=1X;DP=110;DPB=110;DPRA=0;EPP=241.872;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=46.4636;MQMR=0;NS=4;NUMALT=1;ODDS=3.38813e-21;PAIRED=0.890909;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=4361;QR=0;RO=0;RPL=0;RPP=241.872;RPPR=0;RPR=110;RUN=1;SAF=110;SAP=241.872;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:31:0,31:0:0:31:1232:-103.104,-9.33193,0 1/1:47:0,47:0:0:47:1847:-152.365,-14.1484,0 1/1:14:0,14:0:0:14:556:-47.7955,-4.21442,0 1/1:18:0,18:0:0:18:726:-60.7083,-5.41854,0 dDocent_Contig_11617 190 . T C 71.4644 . AB=0.5;ABP=3.0103;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=34;DPB=34;DPRA=0.642857;EPP=9.52472;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=111;QR=1205;RO=31;RPL=3;RPP=9.52472;RPPR=70.3259;RPR=0;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=70.3259;SRR=31;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:6:3,3:3:113:3:111:-8.54431,0,-8.72984 0/0:14:14,0:14:555:0:0:0,-4.21442,-50.2919 0/0:10:10,0:10:384:0:0:0,-3.0103,-34.9109 0/0:4:4,0:4:153:0:0:0,-1.20412,-14.1408 dDocent_Contig_11618 177 . A G 161.599 . AB=0.461538;ABP=3.17734;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=40;DPB=40;DPRA=1.44444;EPP=16.0391;EPPR=72.4974;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=233;QR=1269;RO=32;RPL=6;RPP=16.0391;RPPR=72.4974;RPR=0;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=72.4974;SRR=32;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:6,6:6:246:6:233:-17.5577,0,-18.7381 0/0:17:17,0:17:673:0:0:0,-5.11751,-60.8943 0/0:7:6,0:6:232:0:0:0,-1.80618,-21.0208 0/0:3:3,0:3:118:0:0:0,-0.90309,-11.0022 dDocent_Contig_11619 13 . C G 1156.79 . AB=0.427184;ABP=7.75381;AC=4;AF=0.5;AN=8;AO=44;CIGAR=1X2M1X;DP=103;DPB=103;DPRA=0;EPP=98.5551;EPPR=128.956;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=0.704545;PAIREDR=0.793103;PAO=0;PQA=0;PQR=0;PRO=0;QA=1696;QR=2314;RO=58;RPL=0;RPP=98.5551;RPPR=128.956;RPR=44;RUN=1;SAF=44;SAP=98.5551;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:32:22,10:22:877:10:401:-26.8175,0,-69.6056 0|1:29:12,17:12:486:17:643:-49.4665,0,-35.3618 0|1:21:14,6:14:562:6:236:-15.3302,0,-44.6503 0|1:21:10,11:10:389:11:416:-31.4624,0,-29.0411 dDocent_Contig_11620 56 . G T 183.86 . AB=0.0810811;ABP=59.4099;AC=0;AF=0;AN=8;AO=3;CIGAR=1M3I11M1X;DP=83;DPB=87.8462;DPRA=1.42308;EPP=9.52472;EPPR=139.813;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=118;QR=2463;RO=63;RPL=3;RPP=9.52472;RPPR=139.813;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=63;SRP=139.813;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:37:24,3,7,2:24:936:3,7,2:118,279,79:-15.7545,-13.2731,-89.3024,0,-67.2282,-74.828,-16.4783,-83.7043,-70.4339,-92.8091 0|0:11:7,0,3,0:7:279:0,3,0:0,101,0:-6.0258,-8.13301,-31.1386,0,-22.9751,-22.072,-8.13301,-31.1386,-22.9751,-31.1386 0|0:26:24,0,2,0:24:934:0,2,0:0,82,0:0,-7.22472,-83.9603,-0.0471021,-77.1905,-76.5885,-7.22472,-83.9603,-77.1905,-83.9603 0|0:9:8,0,1,0:8:314:0,1,0:0,31,0:-0.390184,-2.79842,-28.6959,0,-26.2165,-25.9155,-2.79842,-28.6959,-26.2165,-28.6959 dDocent_Contig_11621 1 . N G 189.058 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=5;CIGAR=1X;DP=5;DPB=5;DPRA=0;EPP=13.8677;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=198;QR=0;RO=0;RPL=0;RPP=13.8677;RPPR=0;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:1:0,1:0:0:1:41:-4.09457,-0.30103,0 1/1:4:0,4:0:0:4:157:-14.509,-1.20412,0 dDocent_Contig_11622 173 . G A 160.873 . AB=0.275862;ABP=15.6647;AC=3;AF=0.5;AN=6;AO=8;CIGAR=1X;DP=29;DPB=29;DPRA=0;EPP=20.3821;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=324;QR=828;RO=21;RPL=8;RPP=20.3821;RPPR=48.6112;RPR=0;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=48.6112;SRR=21;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:11,3:11:444:3:121:-7.06578,0,-36.0996 ./.:.:.:.:.:.:.:. 0/1:9:6,3:6:243:3:121:-8.57093,0,-19.5387 0/1:6:4,2:4:141:2:82:-5.9735,0,-11.2264 dDocent_Contig_11623 9 . C T 931.752 . AB=0.0833333;ABP=220.158;AC=1;AF=0.125;AN=8;AO=12;CIGAR=1X7M;DP=246;DPB=245.5;DPRA=0;EPP=29.068;EPPR=270.101;GTI=0;LEN=1;MEANALT=7.5;MQM=59;MQMR=60;NS=4;NUMALT=6;ODDS=0;PAIRED=0.416667;PAIREDR=0.764228;PAO=0;PQA=0;PQR=0;PRO=0;QA=462;QR=4774;RO=123;RPL=0;RPP=29.068;RPPR=270.101;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=123;SRP=270.101;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:64:29,5,2,4,2,9,9:29:1129:5,2,4,2,9,9:156,75,161,78,365,346:-21.3809,-18.9452,-110.224,-23.9675,-105.587,-116.157,-16.8381,-98.4594,-103.489,-108.428,-23.7164,-105.336,-110.365,-103.238,-115.906,0,-81.6262,-86.6547,-79.5266,-86.4038,-90.0885,-1.71043,-83.3332,-88.3614,-81.2335,-88.1105,-64.3991,-91.7951 0|1:80:52,0,2,6,10,1,8:52:2013:0,2,6,10,1,8:0,80,241,384,32,304:-15.8671,-31.5207,-196.874,-24.9294,-190.284,-189.681,-11.6571,-177.014,-170.423,-175.207,0,-165.353,-158.762,-145.492,-162.342,-28.9461,-194.298,-187.707,-174.437,-162.777,-193.997,-6.59784,-171.95,-165.359,-152.089,-140.428,-169.373,-169.541 0|0:67:24,0,4,15,0,17,6:24:940:0,4,15,0,17,6:0,160,603,0,675,241:-48.339,-55.5637,-132.855,-42.3834,-119.675,-118.47,-5.86986,-83.1608,-69.9801,-78.6454,-55.5637,-132.855,-119.675,-83.1608,-132.855,0,-77.2894,-64.1088,-27.5945,-77.2894,-72.1719,-35.7045,-112.996,-99.8151,-63.3011,-112.996,-57.4299,-111.19 0|0:35:18,0,0,5,0,6,6:18:692:0,0,5,0,6,6:0,0,200,0,246,246:-14.8875,-20.3061,-77.1032,-20.3061,-77.1032,-77.1032,-3.83378,-60.6273,-60.6273,-59.1221,-20.3061,-77.1032,-77.1032,-60.6273,-77.1032,0,-56.7958,-56.7958,-40.319,-56.7958,-54.9896,0,-56.7958,-56.7958,-40.319,-56.7958,-36.4867,-54.9896 dDocent_Contig_11624 152 . A T 106.87 . AB=0.277778;ABP=10.7311;AC=1;AF=0.25;AN=4;AO=5;CIGAR=1X;DP=26;DPB=26;DPRA=2.25;EPP=13.8677;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=46.3333;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.714286;PAO=0;PQA=0;PQR=0;PRO=0;QA=197;QR=785;RO=21;RPL=0;RPP=13.8677;RPPR=48.6112;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=48.6112;SRR=21;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:8:8,0:8:300:0:0:0,-2.40824,-27.3491 0/1:18:13,5:13:485:5:197:-12.6869,0,-26.6846 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_11625 11 . G T 549.104 . AB=0.396226;ABP=7.96781;AC=3;AF=0.375;AN=8;AO=21;CIGAR=1X;DP=58;DPB=58;DPRA=3.53333;EPP=48.6112;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=835;QR=1487;RO=37;RPL=0;RPP=48.6112;RPPR=83.3548;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:13,10:13:524:10:397:-29.1637,0,-40.5827 0/1:20:13,7:13:524:7:274:-19.005,0,-41.4858 0/1:10:6,4:6:246:4:164:-12.1396,0,-19.5098 0/0:5:5,0:5:193:0:0:0,-1.50515,-17.7387 dDocent_Contig_11627 16 . C A 437.546 . AB=0.241379;ABP=53.5532;AC=3;AF=0.375;AN=8;AO=21;CIGAR=1X;DP=93;DPB=93;DPRA=4.83333;EPP=48.6112;EPPR=159.356;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.714286;PAIREDR=0.791667;PAO=0;PQA=0;PQR=0;PRO=0;QA=825;QR=2845;RO=72;RPL=0;RPP=48.6112;RPPR=159.356;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=72;SRP=159.356;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:26,10:26:1047:10:400:-25.5205,0,-83.683 0/1:29:22,7:22:882:7:269:-15.8405,0,-70.9586 0/1:22:18,4:18:682:4:156:-7.79146,0,-55.0733 0/0:6:6,0:6:234:0:0:0,-1.80618,-21.4292 dDocent_Contig_11630 30 . A G 938.606 . AB=0.411765;ABP=8.75832;AC=4;AF=0.5;AN=8;AO=35;CIGAR=1X;DP=85;DPB=85;DPRA=0;EPP=79.0118;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.228571;PAIREDR=0.42;PAO=0;PQA=0;PQR=0;PRO=0;QA=1393;QR=1987;RO=50;RPL=0;RPP=79.0118;RPPR=111.584;RPR=35;RUN=1;SAF=35;SAP=79.0118;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:34:22,12:22:860:12:484:-33.6761,0,-67.478 0/1:24:13,11:13:524:11:440:-32.7281,0,-40.2822 0/1:22:14,8:14:565:8:323:-22.8154,0,-44.5693 0/1:5:1,4:1:38:4:146:-11.9867,0,-2.29212 dDocent_Contig_11631 12 . G T 138.348 . AB=0.26087;ABP=14.4341;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=84;DPB=84;DPRA=1.13115;EPP=16.0391;EPPR=172.385;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=0;PAIREDR=0.705128;PAO=0;PQA=0;PQR=0;PRO=0;QA=242;QR=3153;RO=78;RPL=0;RPP=16.0391;RPPR=172.385;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=78;SRP=172.385;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:17,6:17:687:6:242:-15.2328,0,-55.2351 0/0:34:34,0:34:1376:0:0:0,-10.235,-124.092 0/0:16:16,0:16:643:0:0:0,-4.81648,-58.2017 0/0:11:11,0:11:447:0:0:0,-3.31133,-40.585 dDocent_Contig_11632 16 . T C 840.488 . AB=0.455882;ABP=4.1599;AC=4;AF=0.5;AN=8;AO=31;CIGAR=1X;DP=68;DPB=68;DPRA=0;EPP=70.3259;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1227;QR=1503;RO=37;RPL=0;RPP=70.3259;RPPR=83.3548;RPR=31;RUN=1;SAF=31;SAP=70.3259;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:39:23,16:23:932:16:634:-45.6508,0,-72.4402 0/1:2:1,1:1:40:1:41:-3.49251,0,-3.39362 0/1:7:5,2:5:204:2:82:-5.67247,0,-16.6368 0/1:20:8,12:8:327:12:470:-36.6231,0,-23.7795 dDocent_Contig_11633 26 . G T 73.7662 . AB=0.363636;ABP=4.78696;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=71;DPB=71;DPRA=1.44828;EPP=13.8677;EPPR=146.327;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.939394;PAO=0;PQA=0;PQR=0;PRO=0;QA=170;QR=2407;RO=66;RPL=0;RPP=13.8677;RPPR=146.327;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=66;SRP=146.327;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:21:21,0:21:788:0:0:0,-6.32163,-71.2411 0/0:31:30,1:30:1112:1:36:0,-5.73365,-96.7716 0/1:11:7,4:7:237:4:134:-9.07559,0,-18.3423 0/0:8:8,0:8:270:0:0:0,-2.40824,-24.6224 dDocent_Contig_11634 21 . G A 212.464 . AB=0.272727;ABP=7.94546;AC=3;AF=0.375;AN=8;AO=6;CIGAR=1X1M2X;DP=27;DPB=27;DPRA=1.16667;EPP=16.0391;EPPR=37.7539;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.666667;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=239;QR=641;RO=16;RPL=0;RPP=16.0391;RPPR=37.7539;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:3:0,3,0:0:0:3,0:118,0:-11.0022,-0.90309,0,-11.0022,-0.90309,-11.0022 0|0:7:4,0,2:4:159:0,2:0,81:-5.47175,-6.67587,-19.7609,0,-13.0803,-12.4783 0|1:11:6,3,0:6:243:3,0:121,0:-8.17005,0,-19.1379,-9.97623,-20.041,-30.0151 0|0:6:6,0,0:6:239:0,0:0,0:0,-1.80618,-21.8848,-1.80618,-21.8848,-21.8848 dDocent_Contig_11637 48 . C T 50.4733 . AB=0.363636;ABP=4.78696;AC=2;AF=0.25;AN=8;AO=4;CIGAR=1X;DP=28;DPB=28;DPRA=0.647059;EPP=11.6962;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=124;QR=844;RO=24;RPL=0;RPP=11.6962;RPPR=55.1256;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:9:9,0:9:323:0:0:0,-2.70927,-29.414 0/1:6:3,3:3:109:3:91:-6.68349,0,-8.36182 0/1:5:4,1:4:146:1:33:-1.79398,0,-11.9926 0/0:8:8,0:8:266:0:0:0,-2.40824,-24.2606 dDocent_Contig_11639 28 . A G 303.185 . AB=0.387097;ABP=6.44263;AC=2;AF=0.25;AN=8;AO=12;CIGAR=1X;DP=45;DPB=45;DPRA=2.21429;EPP=29.068;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=470;QR=1310;RO=33;RPL=0;RPP=29.068;RPPR=74.6689;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:8,10:8:312:10:391:-30.1288,0,-23.0239 0/0:13:13,0:13:519:0:0:0,-3.91339,-47.0578 0/1:13:11,2:11:438:2:79:-3.58424,0,-35.8624 0/0:1:1,0:1:41:0:0:0,-0.30103,-4.09457 dDocent_Contig_11640 12 . T C 1300.08 . AB=0.505618;ABP=3.0347;AC=3;AF=0.375;AN=8;AO=45;CIGAR=1X;DP=101;DPB=101;DPRA=2.47222;EPP=100.727;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.911111;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1791;QR=2240;RO=56;RPL=0;RPP=100.727;RPPR=124.613;RPR=45;RUN=1;SAF=45;SAP=100.727;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:39:20,19:20:795:19:763:-57.2496,0,-60.126 0/1:29:14,15:14:555:15:593:-44.9773,0,-41.5627 0/0:12:12,0:12:488:0:0:0,-3.61236,-44.2713 0/1:21:10,11:10:402:11:435:-33.1792,0,-30.2171 dDocent_Contig_11641 41 . C T 38.4595 . AB=0.15625;ABP=35.8538;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=58;DPB=58;DPRA=3.69231;EPP=13.8677;EPPR=115.927;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.6;PAIREDR=0.519231;PAO=0;PQA=0;PQR=0;PRO=0;QA=163;QR=1986;RO=52;RPL=0;RPP=13.8677;RPPR=115.927;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:20:20,0:20:785:0:0:0,-6.0206,-70.9712 0/1:32:26,5:26:969:5:163:-5.54459,0,-78.0858 0/0:3:3,0:3:114:0:0:0,-0.90309,-10.6301 0/0:3:3,0:3:118:0:0:0,-0.90309,-11.0022 dDocent_Contig_11642 52 . T A 329.794 . AB=0.311111;ABP=16.956;AC=3;AF=0.375;AN=8;AO=14;CIGAR=1X;DP=51;DPB=51;DPRA=2.5;EPP=33.4109;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=564;QR=1488;RO=37;RPL=14;RPP=33.4109;RPPR=83.3548;RPR=0;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:17,4:17:687:4:161:-8.55364,0,-55.8375 0/1:20:13,7:13:517:7:281:-19.6416,0,-40.8541 0/0:6:6,0:6:243:0:0:0,-1.80618,-22.2476 0/1:4:1,3:1:41:3:122:-10.1684,0,-2.89045 dDocent_Contig_11644 107 . N A 192.425 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=6;CIGAR=1X;DP=6;DPB=6;DPRA=0;EPP=16.0391;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=8.76405;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=210;QR=0;RO=0;RPL=0;RPP=16.0391;RPPR=0;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:6:0,6:0:0:6:210:-19.2424,-1.80618,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_11645 20 . C T 78.979 . AB=0.108696;ABP=125.368;AC=1;AF=0.125;AN=8;AO=12;CIGAR=1X;DP=271;DPB=271;DPRA=2.04386;EPP=29.068;EPPR=565.422;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.9846;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=0.988417;PAO=0;PQA=0;PQR=0;PRO=0;QA=489;QR=10501;RO=259;RPL=0;RPP=29.068;RPPR=565.422;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=259;SRP=565.422;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:92:82,10:82:3334:10:407:-9.29584,0,-272.396 0/0:69:68,1:68:2757:1:41:0,-16.6765,-244.125 0/0:72:71,1:71:2870:1:41:0,-17.5796,-254.295 0/0:38:38,0:38:1540:0:0:0,-11.4391,-138.833 dDocent_Contig_11646 18 . T C 110.075 . AB=0.241379;ABP=36.7056;AC=3;AF=0.375;AN=8;AO=14;CIGAR=1X;DP=72;DPB=72;DPRA=1.38095;EPP=33.4109;EPPR=120.42;GTI=0;LEN=1;MEANALT=1;MQM=33.6429;MQMR=59.2241;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.344828;PAO=0;PQA=0;PQR=0;PRO=0;QA=562;QR=2318;RO=58;RPL=0;RPP=33.4109;RPPR=128.956;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=57;SRP=120.42;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:12,7:12:459:7:284:-6.42126,0,-34.1134 0/1:25:22,3:22:895:3:123:-3.93904,0,-73.3298 0/1:14:10,4:10:399:4:155:-6.0439,0,-32.0551 0/0:14:14,0:14:565:0:0:0,-4.21442,-51.1932 dDocent_Contig_11647 81 . T G 192.859 . AB=0.323529;ABP=12.2071;AC=3;AF=0.375;AN=8;AO=11;CIGAR=1X;DP=38;DPB=38;DPRA=2.83333;EPP=26.8965;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=376;QR=959;RO=27;RPL=11;RPP=26.8965;RPPR=61.6401;RPR=0;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:13,2:13:466:2:72:-2.32127,0,-37.7626 0/1:16:9,7:9:313:7:241:-17.2099,0,-23.6896 0/0:4:4,0:4:145:0:0:0,-1.20412,-13.4056 0/1:3:1,2:1:35:2:63:-5.07968,0,-2.59554 dDocent_Contig_11649 15 . A C 340.846 . AB=0.521739;ABP=3.10471;AC=2;AF=0.25;AN=8;AO=14;CIGAR=1X;DP=59;DPB=59;DPRA=3.6;EPP=33.4109;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=566;QR=1810;RO=45;RPL=0;RPP=33.4109;RPPR=100.727;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:8,4:8:323:4:163:-11.4461,0,-25.826 0/0:31:29,2:29:1169:2:81:0,-1.6462,-97.8019 0/1:11:3,8:3:114:8:322:-26.0364,0,-7.32089 0/0:5:5,0:5:204:0:0:0,-1.50515,-18.744 dDocent_Contig_11650 154 . C T 220.846 . AB=0.184211;ABP=35.9253;AC=0;AF=0;AN=6;AO=7;CIGAR=1X1M1D4M1X2M1I1M1X;DP=42;DPB=42.3333;DPRA=4.75;EPP=18.2106;EPPR=46.4397;GTI=0;LEN=1;MEANALT=3;MQM=14.7143;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=103;QR=766;RO=20;RPL=7;RPP=18.2106;RPPR=46.4397;RPR=0;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=46.4397;SRR=20;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:20:8,0,6,5:8:312:0,6,5:0,89,200:-14.1885,-16.5967,-42.3058,-12.0887,-37.7631,-35.9569,0,-25.7959,-21.2708,-24.2907 0|0:18:12,0,1,4:12:454:0,1,4:0,14,162:-9.92512,-13.5375,-50.7894,-12.8824,-50.1079,-49.8069,0,-37.4176,-36.7396,-36.2135 0|0:4:0,2,0,0:0:0:2,0,0:22,0,0:-1.47856,-0.60206,0,-1.47856,-0.60206,-1.47856,-1.47856,-0.60206,-1.47856,-1.47856 .:.:.:.:.:.:.:. dDocent_Contig_11652 14 . T C 402.179 . AB=0.487805;ABP=3.06326;AC=3;AF=0.375;AN=8;AO=20;CIGAR=1X;DP=45;DPB=45;DPRA=3.41667;EPP=46.4397;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.88;PAO=0;PQA=0;PQR=0;PRO=0;QA=633;QR=986;RO=25;RPL=0;RPP=46.4397;RPPR=57.2971;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:10,10:10:403:10:329:-23.9106,0,-30.6089 0/1:18:9,9:9:354:9:271:-19.2675,0,-26.8001 0/1:3:2,1:2:75:1:33:-2.39604,0,-6.2165 0/0:4:4,0:4:154:0:0:0,-1.20412,-14.2294 dDocent_Contig_11653 13 . G C 367.537 . AB=0.451613;ABP=3.64073;AC=2;AF=0.25;AN=8;AO=14;CIGAR=1X;DP=49;DPB=49;DPRA=1.72222;EPP=33.4109;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.714286;PAIREDR=0.542857;PAO=0;PQA=0;PQR=0;PRO=0;QA=542;QR=1397;RO=35;RPL=0;RPP=33.4109;RPPR=79.0118;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:7,8:7:278:8:327:-25.2847,0,-20.8748 0/0:11:11,0:11:431:0:0:0,-3.31133,-39.1377 0/1:16:10,6:10:405:6:215:-14.8669,0,-31.9936 0/0:7:7,0:7:283:0:0:0,-2.10721,-25.8436 dDocent_Contig_11654 23 . T C 194.308 . AB=0.285714;ABP=14.1779;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=78;DPB=78;DPRA=1.68;EPP=20.3821;EPPR=155.013;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=321;QR=2807;RO=70;RPL=0;RPP=20.3821;RPPR=155.013;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=70;SRP=155.013;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:20,8:20:793:8:321:-20.8288,0,-63.2579 0/0:23:23,0:23:925:0:0:0,-6.92369,-83.5524 0/0:17:17,0:17:691:0:0:0,-5.11751,-62.5186 0/0:10:10,0:10:398:0:0:0,-3.0103,-36.177 dDocent_Contig_11655 45 . C T 576.978 . AB=0.360656;ABP=13.2981;AC=2;AF=0.25;AN=8;AO=22;CIGAR=1X;DP=86;DPB=86;DPRA=2.44;EPP=50.7827;EPPR=141.985;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=875;QR=2553;RO=64;RPL=0;RPP=50.7827;RPPR=141.985;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=64;SRP=141.985;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:17:17,0:17:679:0:0:0,-5.11751,-61.4385 0/1:36:28,8:28:1119:8:323:-18.601,0,-90.1481 0/1:25:11,14:11:433:14:552:-42.4948,0,-31.7926 0/0:8:8,0:8:322:0:0:0,-2.40824,-29.3483 dDocent_Contig_11656 76 . G A 108.256 . AB=0.2;ABP=38.1882;AC=3;AF=0.375;AN=8;AO=9;CIGAR=1X;DP=47;DPB=47;DPRA=7.5;EPP=22.5536;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=319;QR=1313;RO=38;RPL=9;RPP=22.5536;RPPR=85.5263;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:12,3:12:412:3:104:-5.18736,0,-32.8945 0/1:23:20,3:20:692:3:107:-3.05848,0,-55.6789 0/1:7:4,3:4:140:3:108:-7.96796,0,-10.8377 0/0:2:2,0:2:69:0:0:0,-0.60206,-6.55266 dDocent_Contig_11658 115 . G A 79.5515 . AB=0.294118;ABP=9.26925;AC=2;AF=0.25;AN=8;AO=6;CIGAR=1X;DP=34;DPB=34;DPRA=3.44444;EPP=16.0391;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=210;QR=974;RO=28;RPL=0;RPP=16.0391;RPPR=63.8115;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=63.8115;SRR=28;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:14:13,1:13:453:1:35:0,-0.715791,-37.6042 0/1:15:11,4:11:381:4:140:-8.42948,0,-30.1081 0/1:2:1,1:1:35:1:35:-2.89657,0,-2.89657 0/0:3:3,0:3:105:0:0:0,-0.90309,-9.79616 dDocent_Contig_11659 15 . T C 991.057 . AB=0.353659;ABP=18.2636;AC=5;AF=0.625;AN=8;AO=35;CIGAR=1X;DP=88;DPB=88;DPRA=0;EPP=79.0118;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1418;QR=2140;RO=53;RPL=0;RPP=79.0118;RPPR=118.098;RPR=35;RUN=1;SAF=35;SAP=79.0118;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:56:37,19:37:1488:19:770:-52.762,0,-117.307 0/1:19:15,4:15:611:4:161:-9.15533,0,-49.6077 1/1:6:0,6:0:0:6:244:-22.3388,-1.80618,0 0/1:7:1,6:1:41:6:243:-20.1404,0,-1.98736 dDocent_Contig_11660 26 . C T 112.113 . AB=0.177778;ABP=43.5927;AC=3;AF=0.375;AN=8;AO=9;CIGAR=1X;DP=60;DPB=60;DPRA=0;EPP=22.5536;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.7059;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=363;QR=2068;RO=51;RPL=0;RPP=22.5536;RPPR=113.755;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:20,3:20:809:3:121:-4.3563,0,-66.1779 0/1:17:14,3:14:566:3:119:-5.9775,0,-46.1642 0/0:15:14,1:14:571:1:41:0,-0.420883,-47.6269 0/1:5:3,2:3:122:2:82:-6.27453,0,-9.86734 dDocent_Contig_11661 78 . G A 632.105 . AB=0;ABP=0;AC=2;AF=0.25;AN=8;AO=18;CIGAR=1X;DP=85;DPB=85;DPRA=0.863636;EPP=42.0968;EPPR=146.327;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=693;QR=2476;RO=66;RPL=18;RPP=42.0968;RPPR=146.327;RPR=0;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=66;SRP=146.327;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:19:0,18:0:0:18:693:-62.6082,-5.41854,0 0/0:42:42,0:42:1579:0:0:0,-12.6433,-142.373 0/0:22:22,0:22:822:0:0:0,-6.62266,-74.2981 0/0:2:2,0:2:75:0:0:0,-0.60206,-7.1201 dDocent_Contig_11663 109 . C T 539.637 . AB=0.555556;ABP=4.21667;AC=4;AF=0.5;AN=8;AO=25;CIGAR=1X;DP=45;DPB=45;DPRA=0;EPP=57.2971;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=818;QR=668;RO=20;RPL=0;RPP=57.2971;RPPR=46.4397;RPR=25;RUN=1;SAF=0;SAP=57.2971;SAR=25;SRF=0;SRP=46.4397;SRR=20;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:7,11:7:220:11:364:-27.6616,0,-14.6911 0/1:10:6,4:6:208:4:140:-9.93463,0,-16.0493 0/1:6:3,3:3:102:3:96:-7.1511,0,-7.71062 0/1:11:4,7:4:138:7:218:-16.6143,0,-9.44912 dDocent_Contig_11664 108 . A T 107.45 . AB=0.45;ABP=3.44459;AC=3;AF=0.375;AN=8;AO=11;CIGAR=1X;DP=41;DPB=41;DPRA=0;EPP=26.8965;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=298;QR=616;RO=30;RPL=0;RPP=26.8965;RPPR=68.1545;RPR=11;RUN=1;SAF=0;SAP=26.8965;SAR=11;SRF=0;SRP=68.1545;SRR=30;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:21:19,2:19:369:2:61:0,-0.52761,-27.6082 0/1:7:5,2:5:117:2:56:-3.21214,0,-8.65627 0/1:4:2,2:2:48:2:61:-4.5899,0,-3.35567 0/1:9:4,5:4:82:5:120:-8.32888,0,-4.87542 dDocent_Contig_11665 14 . T C 99.5017 . AB=0.173077;ABP=51.2838;AC=2;AF=0.25;AN=8;AO=10;CIGAR=1X;DP=71;DPB=71;DPRA=11.5;EPP=24.725;EPPR=135.47;GTI=0;LEN=1;MEANALT=1;MQM=41.1;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.3;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=405;QR=2402;RO=61;RPL=0;RPP=24.725;RPPR=135.47;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=61;SRP=135.47;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:48:42,6:42:1670:6:244:-5.5287,0,-136.076 0/0:17:16,1:16:619:1:41:0,-1.88137,-52.803 0/1:4:1,3:1:41:3:120:-7.80534,0,-2.89045 0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83432 dDocent_Contig_11666 97 . C A 60.1742 . AB=0.148148;ABP=61.0771;AC=2;AF=0.25;AN=8;AO=9;CIGAR=1X;DP=121;DPB=121;DPRA=1.21795;EPP=22.5536;EPPR=246.215;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=308;QR=3496;RO=112;RPL=9;RPP=22.5536;RPPR=246.215;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=112;SRP=246.215;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:26:26,0:26:849:0:0:0,-7.82678,-76.7146 0/1:47:40,7:40:1271:7:239:-7.69564,0,-100.525 0/0:41:40,1:40:1203:1:35:0,-8.8436,-105.045 0/1:7:6,1:6:173:1:34:-1.2917,0,-13.7472 dDocent_Contig_11668 37 . T C 301.422 . AB=0.342857;ABP=10.5174;AC=1;AF=0.125;AN=8;AO=16;CIGAR=1X;DP=101;DPB=101;DPRA=5.73333;EPP=37.7539;EPPR=187.585;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.917647;PAO=0;PQA=0;PQR=0;PRO=0;QA=622;QR=3301;RO=85;RPL=0;RPP=37.7539;RPPR=187.585;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=85;SRP=187.585;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:11,0:11:430:0:0:0,-3.31133,-39.0536 0/0:51:47,4:47:1808:4:155:0,-1.02739,-148.62 0/1:35:23,12:23:903:12:467:-31.841,0,-71.0434 0/0:4:4,0:4:160:0:0:0,-1.20412,-14.7838 dDocent_Contig_11669 47 . G A 520.758 . AB=0.37037;ABP=10.8919;AC=2;AF=0.25;AN=8;AO=20;CIGAR=1X;DP=73;DPB=73;DPRA=2.84211;EPP=46.4397;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=789;QR=2110;RO=53;RPL=0;RPP=46.4397;RPPR=118.098;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:10:10,0:10:404:0:0:0,-3.0103,-36.7204 0/0:9:9,0:9:354:0:0:0,-2.70927,-32.2206 0/1:40:23,17:23:918:17:666:-48.2234,0,-70.8814 0/1:14:11,3:11:434:3:123:-7.25037,0,-35.1967 dDocent_Contig_11670 172 . T C 259.854 . AB=0.292683;ABP=18.3165;AC=4;AF=0.5;AN=8;AO=12;CIGAR=1X;DP=41;DPB=41;DPRA=0;EPP=5.9056;EPPR=19.8579;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.689655;PAO=0;PQA=0;PQR=0;PRO=0;QA=474;QR=1122;RO=29;RPL=12;RPP=29.068;RPPR=65.983;RPR=0;RUN=1;SAF=8;SAP=5.9056;SAR=4;SRF=7;SRP=19.8579;SRR=22;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:8,2:8:315:2:82:-4.76938,0,-25.7038 0/1:12:11,1:11:422:1:41:-0.482207,0,-34.7132 0/1:16:9,7:9:344:7:277:-20.4827,0,-26.4986 0/1:3:1,2:1:41:2:74:-6.12093,0,-3.19148 dDocent_Contig_11671 31 . G A 213.157 . AB=0.229167;ABP=33.5919;AC=3;AF=0.375;AN=8;AO=11;CIGAR=1X;DP=56;DPB=56;DPRA=2;EPP=26.8965;EPPR=92.2337;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.955556;PAO=0;PQA=0;PQR=0;PRO=0;QA=432;QR=1727;RO=45;RPL=0;RPP=26.8965;RPPR=84.1269;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=44;SRP=92.2337;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:20,2:20:763:2:79:-0.874972,0,-62.366 0/1:15:8,7:8:315:7:272:-20.3307,0,-24.2006 0/1:11:9,2:9:343:2:81:-4.3744,0,-27.9147 0/0:8:8,0:8:306:0:0:0,-2.40824,-27.9008 dDocent_Contig_11672 62 . C A 597.935 . AB=0.233871;ABP=79.292;AC=4;AF=0.5;AN=8;AO=29;CIGAR=1X;DP=124;DPB=124;DPRA=0;EPP=65.983;EPPR=209.3;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.978947;PAO=0;PQA=0;PQR=0;PRO=0;QA=1145;QR=3763;RO=95;RPL=29;RPP=65.983;RPPR=209.3;RPR=0;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=95;SRP=209.3;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:24,5:24:967:5:202:-9.83162,0,-78.5974 0/1:38:30,8:30:1177:8:305:-16.3689,0,-94.767 0/1:38:25,13:25:997:13:520:-35.7078,0,-78.5879 0/1:19:16,3:16:622:3:118:-5.28315,0,-50.5871 dDocent_Contig_11673 27 . G T 503.273 . AB=0.277108;ABP=38.8265;AC=3;AF=0.375;AN=8;AO=24;CIGAR=1X;DP=100;DPB=100;DPRA=0;EPP=46.8017;EPPR=5.35549;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=57.04;NS=4;NUMALT=1;ODDS=0;PAIRED=0.541667;PAIREDR=0.44;PAO=0;PQA=0;PQR=0;PRO=0;QA=923;QR=2727;RO=75;RPL=0;RPP=55.1256;RPPR=165.871;RPR=24;RUN=1;SAF=23;SAP=46.8017;SAR=1;SRF=33;SRP=5.35549;SRR=42;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:15,5:15:571:5:195:-11.902,0,-45.691 0/1:41:29,12:29:1037:12:453:-28.7649,0,-81.084 0/0:17:16,1:16:556:1:40:0,-1.12183,-46.1591 0/1:22:15,6:15:563:6:235:-15.0583,0,-44.5634 dDocent_Contig_11674 18 . T C 79.8704 . AB=0;ABP=0;AC=2;AF=0.25;AN=8;AO=2;CIGAR=1X;DP=51;DPB=51;DPRA=0.122449;EPP=7.35324;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=1974;RO=49;RPL=0;RPP=7.35324;RPPR=109.412;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:24:24,0:24:963:0:0:0,-7.22472,-86.9682 0/0:18:18,0:18:724:0:0:0,-5.41854,-65.4836 0/0:7:7,0:7:287:0:0:0,-2.10721,-26.2052 1/1:2:0,2:0:0:2:81:-7.68573,-0.60206,0 dDocent_Contig_11675 12 . A G 773.605 . AB=0.31;ABP=34.3664;AC=3;AF=0.375;AN=8;AO=31;CIGAR=1M1D1M1X;DP=102;DPB=94.25;DPRA=16.6667;EPP=70.3259;EPPR=155.013;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1243;QR=2734;RO=70;RPL=0;RPP=70.3259;RPPR=155.013;RPR=31;RUN=1;SAF=31;SAP=70.3259;SAR=0;SRF=70;SRP=155.013;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:60:36,24:36:1401:24:965:-69.0888,0,-108.299 0|1:22:18,4:18:710:4:160:-8.16077,0,-57.6081 0|1:18:14,3:14:543:3:118:-5.50851,0,-43.7226 0|0:2:2,0:2:80:0:0:0,-0.60206,-7.59179 dDocent_Contig_11676 90 . T G 235.346 . AB=0.342105;ABP=11.239;AC=2;AF=0.25;AN=8;AO=15;CIGAR=1X;DP=72;DPB=72;DPRA=1.66667;EPP=35.5824;EPPR=124.613;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.866667;PAIREDR=0.678571;PAO=0;PQA=0;PQR=0;PRO=0;QA=486;QR=1817;RO=56;RPL=6;RPP=4.31318;RPPR=12.937;RPR=9;RUN=1;SAF=6;SAP=4.31318;SAR=9;SRF=36;SRP=12.937;SRR=20;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:22:20,2:20:629:2:69:0,-0.0699965,-50.3528 0/0:12:12,0:12:415:0:0:0,-3.61236,-37.682 0/1:32:22,9:22:704:9:286:-16.6235,0,-54.247 0/1:6:2,4:2:69:4:131:-10.3079,0,-4.74648 dDocent_Contig_11677 33 . C T 266.594 . AB=0.5;ABP=3.0103;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=39;DPB=39;DPRA=0.526316;EPP=24.725;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=394;QR=1133;RO=29;RPL=0;RPP=24.725;RPPR=65.983;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:19:19,0:19:726:0:0:0,-5.71957,-65.6507 0/1:10:3,7:3:122:7:279:-22.4685,0,-8.36219 0/1:10:7,3:7:285:3:115:-7.7138,0,-23.0141 ./.:.:.:.:.:.:.:. dDocent_Contig_11678 54 . T G 267.289 . AB=0.333333;ABP=10.9724;AC=2;AF=0.5;AN=4;AO=11;CIGAR=1X;DP=33;DPB=33;DPRA=0;EPP=26.8965;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=440;QR=845;RO=22;RPL=11;RPP=26.8965;RPPR=50.7827;RPR=0;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 0/1:26:17,9:17:648:9:358:-24.7553,0,-50.8215 0/1:7:5,2:5:197:2:82:-5.67247,0,-15.999 dDocent_Contig_11679 28 . A C 41.3026 . AB=0.166667;ABP=20.3821;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=37;DPB=37;DPRA=1.89474;EPP=9.52472;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=1348;RO=34;RPL=0;RPP=9.52472;RPPR=76.8404;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:16:16,0:16:624:0:0:0,-4.81648,-56.4926 0/1:18:15,3:15:601:3:122:-5.95395,0,-49.0103 0/0:3:3,0:3:123:0:0:0,-0.90309,-11.4648 ./.:.:.:.:.:.:.:. dDocent_Contig_11680 209 . N G 922.843 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=25;CIGAR=1X;DP=25;DPB=25;DPRA=0;EPP=57.2971;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=1.69407e-21;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1008;QR=0;RO=0;RPL=25;RPP=57.2971;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=57.2971;SAR=25;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:18:0,18:0:0:18:733:-66.2931,-5.41854,0 1/1:4:0,4:0:0:4:153:-14.1413,-1.20412,0 ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:122:-11.3725,-0.90309,0 dDocent_Contig_11682 14 . T A 7442.06 . AB=0.890625;ABP=172.657;AC=6;AF=0.75;AN=8;AO=218;CIGAR=1X;DP=232;DPB=232;DPRA=0;EPP=476.391;EPPR=33.4109;GTI=0;LEN=1;MEANALT=1;MQM=59.6147;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.986239;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=8732;QR=548;RO=14;RPL=0;RPP=476.391;RPPR=33.4109;RPR=218;RUN=1;SAF=218;SAP=476.391;SAR=0;SRF=14;SRP=33.4109;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:59:7,52:7:261:52:2095:-170.771,0,-6.07738 1/1:86:0,86:0:0:86:3449:-310.272,-25.8886,0 0/1:69:7,62:7:287:62:2458:-200.59,0,-5.43416 1/1:18:0,18:0:0:18:730:-65.9705,-5.41854,0 dDocent_Contig_11683 9 . A G 133.817 . AB=0.266667;ABP=17.1973;AC=3;AF=0.375;AN=8;AO=8;CIGAR=1X;DP=45;DPB=45;DPRA=0.666667;EPP=20.3821;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=43.5;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=306;QR=1412;RO=37;RPL=0;RPP=20.3821;RPPR=83.3548;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:15:15,0:15:572:0:0:0,-4.51545,-51.8213 0/1:11:9,2:9:345:2:73:-3.3954,0,-28.0962 0/1:8:4,4:4:156:4:156:-11.5803,0,-12.009 0/1:11:9,2:9:339:2:77:-3.79787,0,-27.5527 dDocent_Contig_11684 25 . T C 124.212 . AB=0.222222;ABP=21.1059;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=75;DPB=75;DPRA=1.6875;EPP=16.0391;EPPR=152.842;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=57.1014;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=0.666667;PAIREDR=0.84058;PAO=0;PQA=0;PQR=0;PRO=0;QA=243;QR=2763;RO=69;RPL=0;RPP=16.0391;RPPR=152.842;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=69;SRP=152.842;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:18:18,0:18:723:0:0:0,-5.41854,-65.393 0/1:27:21,6:21:834:6:243:-14.1202,0,-65.5337 0/0:24:24,0:24:965:0:0:0,-7.22472,-86.2502 0/0:6:6,0:6:241:0:0:0,-1.80618,-21.7945 dDocent_Contig_11685 13 . T C 244.685 . AB=0.289474;ABP=17.6392;AC=3;AF=0.375;AN=8;AO=11;CIGAR=1X;DP=45;DPB=45;DPRA=1.80952;EPP=26.8965;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.823529;PAO=0;PQA=0;PQR=0;PRO=0;QA=446;QR=1315;RO=34;RPL=0;RPP=26.8965;RPPR=76.8404;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:7:7,0:7:262:0:0:0,-2.10721,-23.9343 0/1:5:2,3:2:81:3:123:-9.95964,0,-6.18058 0/1:15:10,5:10:400:5:203:-14.1376,0,-31.8444 0/1:18:15,3:15:572:3:120:-5.76915,0,-46.3872 dDocent_Contig_11686 139 . G A 59.2343 . AB=0.162162;ABP=39.6906;AC=3;AF=0.375;AN=8;AO=6;CIGAR=1X;DP=39;DPB=39;DPRA=6.16667;EPP=16.0391;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=222;QR=1251;RO=33;RPL=0;RPP=16.0391;RPPR=74.6689;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=74.6689;SRR=33;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:18,4:18:678:4:148:-7.05931,0,-54.7272 0/1:10:9,1:9:342:1:37:-0.687529,0,-28.1262 0/1:5:4,1:4:153:1:37:-2.19268,0,-12.6362 0/0:2:2,0:2:78:0:0:0,-0.60206,-7.40347 dDocent_Contig_11687 107 . N T 86.9657 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=5;CIGAR=1X3M1X;DP=5;DPB=5;DPRA=0;EPP=13.8677;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=17.6;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=152;QR=0;RO=0;RPL=0;RPP=13.8677;RPPR=0;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. 1|1:1:0,1:0:0:1:34:-1.19744,-0.30103,0 1|1:2:0,2:0:0:2:50:-2.03003,-0.60206,0 1|1:2:0,2:0:0:2:68:-4.98016,-0.60206,0 dDocent_Contig_11688 77 . T C 213.18 . AB=0.344828;ABP=9.07545;AC=1;AF=0.125;AN=8;AO=10;CIGAR=1X;DP=60;DPB=60;DPRA=2.80645;EPP=24.725;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=349;QR=1702;RO=50;RPL=10;RPP=24.725;RPPR=111.584;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:14:14,0:14:485:0:0:0,-4.21442,-43.979 0/1:29:19,10:19:658:10:349:-23.0169,0,-50.8128 0/0:10:10,0:10:322:0:0:0,-3.0103,-29.2908 0/0:7:7,0:7:237:0:0:0,-2.10721,-21.6612 dDocent_Contig_11690 117 . T G 951.962 . AB=0.625;ABP=9.52472;AC=6;AF=0.75;AN=8;AO=34;CIGAR=1X1M1X4M;DP=52;DPB=52;DPRA=0;EPP=76.8404;EPPR=33.4109;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.823529;PAIREDR=0.928571;PAO=0;PQA=0;PQR=0;PRO=0;QA=1163;QR=477;RO=14;RPL=0;RPP=76.8404;RPPR=33.4109;RPR=34;RUN=1;SAF=0;SAP=76.8404;SAR=34;SRF=0;SRP=33.4109;SRR=14;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:10:1,4,5:1:34:4,5:135,160:-20.7616,-10.1128,-11.67,-8.18153,0,-9.43487 0|1:20:7,0,13:7:236:0,13:0,454:-35.1727,-37.2799,-56.4018,0,-19.4632,-15.5498 0|1:18:6,0,12:6:207:0,12:0,412:-31.9915,-33.7977,-50.6154,0,-17.1621,-13.5497 1|1:4:0,0,4:0:0:0,4:0,137:-12.6682,-12.6682,-12.6682,-1.20412,-1.20412,0 dDocent_Contig_11691 116 . A T 54.886 . AB=0.272727;ABP=7.94546;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=25;DPB=25;DPRA=2.35714;EPP=9.52472;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=49;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=110;QR=760;RO=22;RPL=0;RPP=9.52472;RPPR=50.7827;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=50.7827;SRR=22;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:8,3:8:276:3:110:-6.88593,0,-21.8647 0/0:1:1,0:1:34:0:0:0,-0.30103,-3.39891 0/0:7:7,0:7:236:0:0:0,-2.10721,-21.5697 0/0:6:6,0:6:214:0:0:0,-1.80618,-19.6074 dDocent_Contig_11692 13 . T G 145.734 . AB=0.714286;ABP=5.80219;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=37;DPB=37;DPRA=0.7;EPP=13.8677;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.78125;PAO=0;PQA=0;PQR=0;PRO=0;QA=200;QR=1295;RO=32;RPL=0;RPP=13.8677;RPPR=72.4974;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:11,0:11:451:0:0:0,-3.31133,-40.9457 0/0:5:5,0:5:190:0:0:0,-1.50515,-17.4663 0/0:14:14,0:14:572:0:0:0,-4.21442,-51.8216 0/1:7:2,5:2:82:5:200:-16.2723,0,-5.67247 dDocent_Contig_11693 11 . T C 726.849 . AB=0.37931;ABP=6.67934;AC=4;AF=0.5;AN=8;AO=23;CIGAR=1X;DP=42;DPB=42;DPRA=13.6667;EPP=52.9542;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.826087;PAIREDR=0.947368;PAO=0;PQA=0;PQR=0;PRO=0;QA=930;QR=770;RO=19;RPL=0;RPP=52.9542;RPPR=44.2683;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:10,4:10:406:4:162:-10.7525,0,-32.6856 0/1:15:8,7:8:324:7:285:-21.5087,0,-25.0129 1/1:12:0,12:0:0:12:483:-43.821,-3.61236,0 0/0:1:1,0:1:40:0:0:0,-0.30103,-3.99568 dDocent_Contig_11694 11 . T G 2297.45 . AB=0.70297;ABP=39.1513;AC=5;AF=0.625;AN=8;AO=73;CIGAR=1X;DP=103;DPB=103;DPRA=0;EPP=161.528;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2936;QR=1188;RO=30;RPL=0;RPP=161.528;RPPR=68.1545;RPR=73;RUN=1;SAF=73;SAP=161.528;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:56:20,36:20:808:36:1450:-113.891,0,-56.1769 0/1:34:8,26:8:298:26:1042:-83.839,0,-16.9337 0/1:11:2,9:2:82:9:362:-29.6327,0,-4.46835 1/1:2:0,2:0:0:2:82:-7.77968,-0.60206,0 dDocent_Contig_11695 9 . A G 32.965 . AB=0.25;ABP=7.35324;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X;DP=35;DPB=35;DPRA=0.888889;EPP=7.35324;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=78;QR=1268;RO=33;RPL=0;RPP=7.35324;RPPR=74.6689;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:7:7,0:7:271:0:0:0,-2.10721,-24.7563 0/0:13:13,0:13:492:0:0:0,-3.91339,-44.6246 0/1:8:6,2:6:232:2:78:-4.99523,0,-18.8408 0/0:7:7,0:7:273:0:0:0,-2.10721,-24.938 dDocent_Contig_11696 73 . G A 37.1552 . AB=0.2;ABP=18.6449;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=33;DPB=33;DPRA=3.07692;EPP=11.6962;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=125;QR=943;RO=29;RPL=4;RPP=11.6962;RPPR=65.983;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 0/0:11:11,0:11:379:0:0:0,-3.31133,-34.4422 0/1:20:16,4:16:508:4:125:-5.53898,0,-40.0056 0/0:2:2,0:2:56:0:0:0,-0.60206,-5.31942 dDocent_Contig_11697 35 . A G 43.8894 . AB=0.230769;ABP=11.1951;AC=2;AF=0.25;AN=8;AO=3;CIGAR=1X;DP=71;DPB=71;DPRA=0.224138;EPP=9.52472;EPPR=150.67;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=121;QR=2702;RO=68;RPL=0;RPP=9.52472;RPPR=150.67;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=68;SRP=150.67;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:39:39,0:39:1544:0:0:0,-11.7402,-139.198 0/0:19:19,0:19:765:0:0:0,-5.71957,-69.1714 0/1:9:7,2:7:275:2:80:-4.88252,0,-22.4075 0/1:4:3,1:3:118:1:41:-2.89045,0,-9.79839 dDocent_Contig_11698 9 . A G 126.129 . AB=0.384615;ABP=4.51363;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=50;DPB=50;DPRA=1.05405;EPP=13.8677;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.333333;PAO=0;PQA=0;PQR=0;PRO=0;QA=195;QR=1742;RO=45;RPL=0;RPP=13.8677;RPPR=100.727;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:8,5:8:312:5:195:-14.0108,0,-24.5315 0/0:10:10,0:10:389:0:0:0,-3.0103,-35.3684 0/0:20:20,0:20:772:0:0:0,-6.0206,-69.8069 0/0:7:7,0:7:269:0:0:0,-2.10721,-24.5747 dDocent_Contig_11700 98 . N A 394.693 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=13;CIGAR=1X;DP=13;DPB=13;DPRA=0;EPP=31.2394;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=428;QR=0;RO=0;RPL=13;RPP=31.2394;RPPR=0;RPR=0;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:7:0,7:0:0:7:228:-20.8402,-2.10721,0 1/1:6:0,6:0:0:6:200:-18.3281,-1.80618,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_11701 8 . T C 788.122 . AB=0.514286;ABP=3.07234;AC=5;AF=0.625;AN=8;AO=31;CIGAR=1X;DP=48;DPB=48;DPRA=0;EPP=70.3259;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=35.6452;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1197;QR=656;RO=17;RPL=0;RPP=70.3259;RPPR=39.9253;RPR=31;RUN=1;SAF=31;SAP=70.3259;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:13:0,13:0:0:13:505:-42.094,-3.91339,0 0/1:14:9,5:9:346:5:195:-11.8285,0,-27.2844 0/1:15:5,10:5:195:10:381:-22.925,0,-13.4087 0/1:6:3,3:3:115:3:116:-7.36265,0,-8.91871 dDocent_Contig_11702 98 . N C 482.468 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=16;CIGAR=1X;DP=16;DPB=16;DPRA=0;EPP=37.7539;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=1.69407e-21;PAIRED=0.875;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=521;QR=0;RO=0;RPL=16;RPP=37.7539;RPPR=0;RPR=0;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:53:-5.03393,-0.60206,0 1/1:13:0,13:0:0:13:439:-39.8349,-3.91339,0 1/1:1:0,1:0:0:1:29:-2.89966,-0.30103,0 ./.:.:.:.:.:.:.:. dDocent_Contig_11703 13 . G A 68.1264 . AB=0.210526;ABP=16.8392;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=71;DPB=71;DPRA=0.775;EPP=6.91895;EPPR=146.327;GTI=0;LEN=1;MEANALT=1;MQM=50.2;MQMR=59.8939;NS=4;NUMALT=1;ODDS=0;PAIRED=0.8;PAIREDR=0.621212;PAO=0;PQA=0;PQR=0;PRO=0;QA=188;QR=2664;RO=66;RPL=0;RPP=13.8677;RPPR=146.327;RPR=5;RUN=1;SAF=4;SAP=6.91895;SAR=1;SRF=66;SRP=146.327;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:21:21,0:21:845:0:0:0,-6.32163,-76.3516 0/1:19:15,4:15:606:4:154:-8.51161,0,-49.1583 0/0:19:19,0:19:763:0:0:0,-5.71957,-68.9892 0/0:12:11,1:11:450:1:34:0,-2.51436,-39.7578 dDocent_Contig_11704 128 . A C 110.76 . AB=0.5;ABP=3.0103;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=32;DPB=32;DPRA=0.909091;EPP=13.8677;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=0.962963;PAO=0;PQA=0;PQR=0;PRO=0;QA=173;QR=902;RO=27;RPL=0;RPP=13.8677;RPPR=61.6401;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=61.6401;SRR=27;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 0/0:11:11,0:11:379:0:0:0,-3.31133,-34.4403 0/0:11:11,0:11:357:0:0:0,-3.31133,-32.4436 0/1:10:5,5:5:166:5:173:-12.8999,0,-12.2561 dDocent_Contig_11705 8 . T C 154.718 . AB=0.25;ABP=20.3821;AC=2;AF=0.25;AN=8;AO=8;CIGAR=2X;DP=59;DPB=59;DPRA=1.18519;EPP=20.3821;EPPR=107.241;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=306;QR=1833;RO=48;RPL=0;RPP=20.3821;RPPR=107.241;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:13:9,4,0:9:339:4,0:155,0:-10.412,0,-26.9501,-13.1213,-28.1543,-40.8917 0|0:19:18,0,0:18:694:0,0:0,0:0,-5.41854,-62.4047,-5.41854,-62.4047,-62.4047 0|1:19:13,4,2:13:496:4,2:151,77:-8.45764,0,-39.4847,-6.04615,-34.366,-46.139 0|0:8:8,0,0:8:304:0,0:0,0:0,-2.40824,-27.7194,-2.40824,-27.7194,-27.7194 dDocent_Contig_11706 118 . G A 30.6492 . AB=0.4;ABP=3.44459;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=36;DPB=36;DPRA=1;EPP=9.52472;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=101;QR=1039;RO=33;RPL=0;RPP=9.52472;RPPR=74.6689;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=74.6689;SRR=33;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:14:14,0:14:461:0:0:0,-4.21442,-41.8065 0/0:13:12,1:12:352:1:35:0,-0.414761,-28.4667 0/0:4:4,0:4:121:0:0:0,-1.20412,-11.1896 0/1:5:3,2:3:105:2:66:-4.76303,0,-8.29101 dDocent_Contig_11708 65 . G T 48.3948 . AB=0.3;ABP=6.48466;AC=2;AF=0.25;AN=8;AO=4;CIGAR=1X;DP=37;DPB=37;DPRA=1.20833;EPP=11.6962;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=144;QR=1247;RO=33;RPL=4;RPP=11.6962;RPPR=74.6689;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:8:8,0:8:291:0:0:0,-2.40824,-26.5335 0/1:5:3,2:3:107:2:77:-5.80399,0,-8.47225 0/0:19:18,1:18:694:1:28:0,-2.91984,-59.9857 0/1:5:4,1:4:155:1:39:-2.39141,0,-12.8189 dDocent_Contig_11710 8 . T C 137.904 . AB=0.291667;ABP=12.0581;AC=2;AF=0.25;AN=8;AO=7;CIGAR=1X;DP=48;DPB=48;DPRA=1;EPP=18.2106;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=263;QR=1584;RO=41;RPL=0;RPP=18.2106;RPPR=92.0407;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:19:19,0:19:730:0:0:0,-5.71957,-66.0302 0/1:15:10,5:10:389:5:185:-12.4939,0,-30.8529 0/1:9:7,2:7:271:2:78:-4.6942,0,-22.047 0/0:5:5,0:5:194:0:0:0,-1.50515,-17.8328 dDocent_Contig_11711 23 . T C 279.689 . AB=0.288889;ABP=20.4303;AC=4;AF=0.5;AN=8;AO=13;CIGAR=1X;DP=45;DPB=45;DPRA=0;EPP=31.2394;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=526;QR=1299;RO=32;RPL=0;RPP=31.2394;RPPR=72.4974;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:9,4:9:367:4:162:-11.0534,0,-29.4819 0/1:25:18,7:18:731:7:285:-18.4987,0,-58.5881 0/1:4:3,1:3:121:1:39:-2.69244,0,-10.0761 0/1:3:2,1:2:80:1:40:-3.09259,0,-6.6887 dDocent_Contig_11712 87 . A T 107.587 . AB=0.269231;ABP=15.0369;AC=3;AF=0.375;AN=8;AO=7;CIGAR=1X;DP=27;DPB=27;DPRA=8.66667;EPP=18.2106;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=249;QR=707;RO=20;RPL=7;RPP=18.2106;RPPR=46.4397;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:1:1,0:1:35:0:0:0,-0.30103,-3.49863 0/1:16:12,4:12:428:4:142:-8.31279,0,-34.0427 0/1:3:1,2:1:31:2:70:-5.74424,0,-2.19636 0/1:7:6,1:6:213:1:37:-1.59062,0,-17.4093 dDocent_Contig_11713 24 . C T 139.395 . AB=0.185185;ABP=26.2531;AC=2;AF=0.25;AN=8;AO=5;CIGAR=1X2M1X;DP=39;DPB=39;DPRA=13.5;EPP=13.8677;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=201;QR=1125;RO=28;RPL=0;RPP=13.8677;RPPR=63.8115;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:22:15,4,3:15:599:4,3:161,122:-8.75094,0,-48.1223,-3.20138,-39.2619,-51.6283 0|0:1:1,0,0:1:41:0,0:0,0:0,-0.30103,-4.09457,-0.30103,-4.09457,-4.09457 0|1:5:4,1,0:4:161:1,0:40,0:-2.49053,0,-13.3703,-3.69465,-13.6714,-16.966 0|0:11:8,0,3:8:324:0,3:0,122:-8.06116,-10.4694,-37.1844,0,-27.1207,-26.2177 dDocent_Contig_11714 17 . A G 890.17 . AB=0.492537;ABP=3.04271;AC=4;AF=0.5;AN=8;AO=33;CIGAR=1M3I1X3M1X1M3D2M1X1M1X1M2X;DP=67;DPB=67;DPRA=0;EPP=74.6689;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1.25;MQM=50.0303;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1301;QR=1295;RO=33;RPL=0;RPP=74.6689;RPPR=74.6689;RPR=33;RUN=1;SAF=33;SAP=74.6689;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:6:3,3:3:119:3:120:-9.33436,0,-9.28921 0|1:29:16,13:16:626:13:511:-37.4305,0,-47.948 0|1:19:9,9:9:353:9:356:-25.4791,0,-26.3161 0|1:13:5,8:5:197:8:314:-24.1709,0,-14.193 dDocent_Contig_11716 115 . G A 134.957 . AB=0.272727;ABP=17.8158;AC=2;AF=0.25;AN=8;AO=10;CIGAR=1X;DP=72;DPB=72;DPRA=1;EPP=24.725;EPPR=137.642;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=322;QR=2178;RO=62;RPL=0;RPP=24.725;RPPR=137.642;RPR=10;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=137.642;SRR=62;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:7,5:7:259:5:159:-11.0109,0,-20.0537 0/0:18:18,0:18:617:0:0:0,-5.41854,-55.8449 0/1:21:17,4:17:603:4:132:-5.8827,0,-48.275 0/0:21:20,1:20:699:1:31:0,-3.22218,-60.1304 dDocent_Contig_11717 42 . A G 146.63 . AB=0.166667;ABP=37.7539;AC=5;AF=0.625;AN=8;AO=8;CIGAR=1X;DP=38;DPB=38;DPRA=0;EPP=20.3821;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.866667;PAO=0;PQA=0;PQR=0;PRO=0;QA=325;QR=1174;RO=30;RPL=0;RPP=20.3821;RPPR=68.1545;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:10,2:10:397:2:81:-4.07337,0,-32.4746 0/1:18:15,3:15:580:3:123:-6.04625,0,-47.1169 0/1:6:5,1:5:197:1:40:-2.1895,0,-16.2993 1/1:2:0,2:0:0:2:81:-7.68573,-0.60206,0 dDocent_Contig_11718 10 . T C 69.6892 . AB=0.114286;ABP=93.4676;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=204;DPB=204;DPRA=1.56716;EPP=20.3821;EPPR=424.276;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=323;QR=7717;RO=194;RPL=0;RPP=20.3821;RPPR=424.276;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=194;SRP=424.276;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:70:62,8:62:2466:8:323:-8.36686,0,-201.001 0/0:60:60,0:60:2365:0:0:0,-18.0618,-212.986 0/0:34:32,0:32:1282:0:0:0,-9.63296,-115.246 0/0:40:40,0:40:1604:0:0:0,-12.0412,-144.59 dDocent_Contig_11719 12 . T G 112.116 . AB=0.166667;ABP=26.1727;AC=0;AF=0;AN=8;AO=7;CIGAR=3X2M;DP=108;DPB=108;DPRA=0;EPP=18.2106;EPPR=198.443;GTI=0;LEN=1;MEANALT=2.33333;MQM=46.8571;MQMR=60;NS=4;NUMALT=4;ODDS=0;PAIRED=0.714286;PAIREDR=0.944444;PAO=0;PQA=0;PQR=0;PRO=0;QA=228;QR=3527;RO=90;RPL=0;RPP=18.2106;RPPR=198.443;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=90;SRP=198.443;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:38:36,0,1,1,0:36:1406:0,1,1,0:0,40,36,0:0,-10.8371,-126.425,-7.52213,-123.13,-122.829,-7.91953,-123.489,-120.193,-123.188,-10.8371,-126.425,-123.13,-123.489,-126.425 0|0:24:13,5,4,0,2:13:519:5,4,0,2:203,108,0,75:-12.885,0,-41.3186,-8.86394,-34.8703,-50.4123,-16.7984,-42.8238,-51.6165,-59.5753,-11.3404,-37.3685,-46.1646,-54.1201,-53.518 0|0:37:33,0,2,2,0:33:1286:0,2,2,0:0,80,72,0:0,-9.93399,-115.636,-3.32394,-109.045,-108.443,-4.07981,-109.763,-103.172,-109.161,-9.93399,-115.636,-109.045,-109.763,-115.636 0|0:9:8,0,0,1,0:8:316:0,0,1,0:0,0,41,0:-1.3853,-3.79354,-29.7826,-3.79354,-29.7826,-29.7826,0,-26.3969,-26.3969,-26.0959,-3.79354,-29.7826,-29.7826,-26.3969,-29.7826 dDocent_Contig_11720 10 . T G 193.919 . AB=0.32;ABP=10.0459;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=40;DPB=40;DPRA=3.33333;EPP=20.3821;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=312;QR=1298;RO=32;RPL=0;RPP=20.3821;RPPR=72.4974;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:17,8:17:689:8:312:-20.9147,0,-54.8134 0/0:11:11,0:11:445:0:0:0,-3.31133,-40.4057 0/0:4:4,0:4:164:0:0:0,-1.20412,-15.1499 ./.:.:.:.:.:.:.:. dDocent_Contig_11721 117 . C A 92.7138 . AB=0.2;ABP=10.8276;AC=3;AF=0.375;AN=8;AO=4;CIGAR=1X2M5I1M1X;DP=27;DPB=32;DPRA=0.928571;EPP=11.6962;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=148;QR=717;RO=22;RPL=0;RPP=11.6962;RPPR=50.7827;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=0;SRP=50.7827;SRR=22;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:3:0,2:0:0:2:72:-6.46328,-0.60206,0 0|1:10:8,2:8:240:2:76:-4.20451,0,-18.8839 0|0:13:13,0:13:442:0:0:0,-3.91339,-40.1069 0|0:1:1,0:1:35:0:0:0,-0.30103,-3.49863 dDocent_Contig_11722 22 . T C 110.877 . AB=0.533333;ABP=3.15506;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=30;DPB=30;DPRA=2;EPP=20.3821;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=191;QR=746;RO=22;RPL=0;RPP=20.3821;RPPR=50.7827;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:9:9,0:9:355:0:0:0,-2.70927,-32.3082 0/1:15:7,8:7:219:8:191:-12.9115,0,-15.5034 0/0:6:6,0:6:172:0:0:0,-1.80618,-15.7646 ./.:.:.:.:.:.:.:. dDocent_Contig_11723 9 . A C 281.119 . AB=0.222222;ABP=15.074;AC=3;AF=0.375;AN=8;AO=10;CIGAR=1X;DP=33;DPB=33;DPRA=2.66667;EPP=24.725;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.4;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=380;QR=873;RO=23;RPL=0;RPP=24.725;RPPR=52.9542;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:8:8,0:8:305:0:0:0,-2.40824,-27.8092 0/1:18:14,4:14:531:4:146:-8.07811,0,-42.7124 0/0:1:1,0:1:37:0:0:0,-0.30103,-3.69783 1/1:6:0,6:0:0:6:234:-21.4311,-1.80618,0 dDocent_Contig_11724 126 . G C 35.1065 . AB=0.214286;ABP=12.937;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=84;DPB=84;DPRA=0.5;EPP=11.6962;EPPR=159.791;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=39.15;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=0.5875;PAO=0;PQA=0;PQR=0;PRO=0;QA=134;QR=2637;RO=80;RPL=0;RPP=11.6962;RPPR=176.728;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=2;SRP=159.791;SRR=78;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:26:26,0:26:869:0:0:0,-7.82678,-64.8675 0/0:30:30,0:30:987:0:0:0,-9.0309,-48.2124 0/1:14:11,3:11:384:3:101:-5.20935,0,-17.5345 0/0:14:13,1:13:397:1:33:0,-0.915285,-28.2339 dDocent_Contig_11725 16 . T A 448.558 . AB=0.409091;ABP=4.58955;AC=4;AF=0.5;AN=8;AO=16;CIGAR=1X3M4I2M;DP=44;DPB=54.6667;DPRA=0.644444;EPP=37.7539;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=53.4375;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=600;QR=1111;RO=28;RPL=0;RPP=37.7539;RPPR=63.8115;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:7:0,7:0:0:7:263:-23.945,-2.10721,0 0|0:15:15,0:15:595:0:0:0,-4.51545,-53.8907 0|1:16:10,6:10:396:6:226:-15.8055,0,-31.1818 0|1:6:3,3:3:120:3:111:-8.50315,0,-9.38172 dDocent_Contig_11726 71 . A G 121.312 . AB=0.333333;ABP=6.62942;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=37;DPB=37;DPRA=1.36364;EPP=13.8677;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=201;QR=1276;RO=32;RPL=5;RPP=13.8677;RPPR=72.4974;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:18:18,0:18:723:0:0:0,-5.41854,-65.3955 0/1:15:10,5:10:392:5:201:-13.9551,0,-31.1206 0/0:4:4,0:4:161:0:0:0,-1.20412,-14.8753 ./.:.:.:.:.:.:.:. dDocent_Contig_11727 96 . G A 583.732 . AB=0.474576;ABP=3.34154;AC=4;AF=0.5;AN=8;AO=28;CIGAR=1X;DP=59;DPB=59;DPRA=0;EPP=63.8115;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=914;QR=1005;RO=30;RPL=28;RPP=63.8115;RPPR=68.1545;RPR=0;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:6,12:6:194:12:401:-30.9938,0,-12.3589 0/1:26:19,6:19:640:6:199:-10.4062,0,-50.09 0/1:8:2,6:2:70:6:179:-13.9945,0,-4.23916 0/1:7:3,4:3:101:4:135:-10.3761,0,-7.31656 dDocent_Contig_11728 106 . N A 127.607 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=4;CIGAR=2X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=7.37776;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=138;QR=0;RO=0;RPL=0;RPP=11.6962;RPPR=0;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. 1|1:4:0,4:0:0:4:138:-12.7604,-1.20412,0 .:.:.:.:.:.:.:. dDocent_Contig_11729 14 . C A 698.118 . AB=0.320513;ABP=24.8364;AC=5;AF=0.625;AN=8;AO=27;CIGAR=1X;DP=80;DPB=80;DPRA=0;EPP=61.6401;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1080;QR=2124;RO=53;RPL=0;RPP=61.6401;RPPR=118.098;RPR=27;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:19,7:19:764:7:275:-17.2893,0,-61.2542 0/1:23:17,6:17:674:6:241:-15.1428,0,-54.0646 0/1:29:17,12:17:686:12:483:-35.0917,0,-53.3403 1/1:2:0,2:0:0:2:81:-7.68573,-0.60206,0 dDocent_Contig_11730 128 . A C 770.645 . AB=0.0892857;ABP=85.0609;AC=0;AF=0;AN=8;AO=5;CIGAR=1X1M1X2M;DP=128;DPB=128;DPRA=0;EPP=13.8677;EPPR=141.985;GTI=0;LEN=1;MEANALT=6;MQM=60;MQMR=60;NS=4;NUMALT=5;ODDS=0;PAIRED=0;PAIREDR=0.390625;PAO=0;PQA=0;PQR=0;PRO=0;QA=163;QR=2221;RO=64;RPL=0;RPP=13.8677;RPPR=141.985;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=141.985;SRR=64;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:26:4,0,0,5,8,9:4:136:0,0,5,8,9:0,0,174,278,314:-35.9101,-37.1142,-48.1448,-37.1142,-48.1448,-48.1448,-22.9653,-33.9956,-33.9956,-32.4904,-14.5122,-25.5421,-25.5421,-11.3927,-23.1339,-11.5738,-22.6038,-22.6038,-8.45402,0,-19.8946 0|0:56:29,5,0,5,2,13:29:1008:5,0,5,2,13:163,0,169,70,453:-28.1259,-23.6968,-104.152,-36.8558,-105.657,-118.816,-23.1546,-91.9576,-105.116,-103.611,-31.1589,-99.9613,-113.12,-99.4206,-112.518,0,-68.8137,-81.9727,-68.2727,-76.2766,-78.0593 0|0:20:14,0,0,0,6,0:14:494:0,0,0,6,0:0,0,0,192,0:-11.5737,-15.7881,-56.0375,-15.7881,-56.0375,-56.0375,-15.7881,-56.0375,-56.0375,-56.0375,0,-40.5791,-40.5791,-40.5791,-38.773,-15.7881,-56.0375,-56.0375,-56.0375,-40.5791,-56.0375 0|0:26:17,0,4,0,5,0:17:583:0,4,0,5,0:0,137,0,172,0:-8.85262,-13.9701,-61.3028,-2.84923,-50.1813,-48.9772,-13.9701,-61.3028,-50.1813,-61.3028,0,-47.3332,-36.2118,-47.3332,-45.8281,-13.9701,-61.3028,-50.1813,-61.3028,-47.3332,-61.3028 dDocent_Contig_11731 131 . T C 1201.1 . AB=0.517857;ABP=3.16541;AC=5;AF=0.625;AN=8;AO=45;CIGAR=1X;DP=72;DPB=72;DPRA=0;EPP=92.2337;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.0444444;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1567;QR=963;RO=27;RPL=0;RPP=100.727;RPPR=61.6401;RPR=45;RUN=1;SAF=1;SAP=92.2337;SAR=44;SRF=0;SRP=61.6401;SRR=27;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:16:0,16:0:0:16:550:-49.826,-4.81648,0 0/1:29:8,21:8:288:21:738:-58.0126,0,-17.5375 0/1:19:15,4:15:531:4:139:-7.13312,0,-42.4037 0/1:8:4,4:4:144:4:140:-10.5367,0,-10.9054 dDocent_Contig_11732 18 . A C 894.607 . AB=0.375;ABP=4.09604;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X1M2X;DP=73;DPB=73;DPRA=0;EPP=9.52472;EPPR=59.4686;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=4;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=0.961538;PAO=0;PQA=0;PQR=0;PRO=0;QA=118;QR=1037;RO=26;RPL=0;RPP=9.52472;RPPR=59.4686;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:23:4,0,3,10,6:4:163:0,3,10,6:0,121,400,236:-37.7031,-38.9072,-52.3561,-28.9321,-42.3814,-41.4783,-5.95596,-19.4066,-9.43135,-16.3963,-19.4973,-32.9462,-22.9718,0,-31.14 0|0:25:13,0,6,3,3:13:515:0,6,3,3:0,241,122,110:-15.9534,-19.8667,-62.2568,0,-42.3955,-40.5893,-9.79937,-52.192,-32.3297,-51.2889,-10.8862,-53.271,-33.4107,-43.2066,-52.3679 0|0:17:8,0,0,9,0:8:324:0,0,9,0:0,0,349,0:-26.6465,-29.0548,-55.7793,-29.0548,-55.7793,-55.7793,0,-27.121,-27.121,-24.4117,-29.0548,-55.7793,-55.7793,-27.121,-55.7793 1|0:8:1,3,1,0,3:1:35:3,1,0,3:118,40,0,121:-16.5556,-7.15383,-9.08804,-13.5613,-6.69406,-16.1011,-16.8566,-9.99113,-16.4022,-19.6983,-6.87883,0,-6.41906,-9.71762,-8.81453 dDocent_Contig_11735 114 . A C 185.698 . AB=0.309524;ABP=16.2459;AC=4;AF=0.5;AN=8;AO=13;CIGAR=1X;DP=42;DPB=42;DPRA=0;EPP=31.2394;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=414;QR=941;RO=29;RPL=0;RPP=31.2394;RPPR=65.983;RPR=13;RUN=1;SAF=0;SAP=31.2394;SAR=13;SRF=0;SRP=65.983;SRR=29;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:5,4:5:162:4:131:-9.40479,0,-12.1901 0/1:13:10,3:10:334:3:103:-5.69658,0,-26.471 0/1:16:11,5:11:344:5:145:-8.51999,0,-26.4467 0/1:4:3,1:3:101:1:35:-2.29451,0,-8.21965 dDocent_Contig_11736 19 . T G 331.468 . AB=0.5;ABP=3.0103;AC=2;AF=0.25;AN=8;AO=12;CIGAR=1X;DP=50;DPB=50;DPRA=0.923077;EPP=29.068;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=474;QR=1501;RO=38;RPL=0;RPP=29.068;RPPR=85.5263;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:16:16,0:16:626:0:0:0,-4.81648,-56.6745 0/1:8:1,7:1:41:7:274:-22.6179,0,-1.68633 0/1:16:11,5:11:436:5:200:-13.5634,0,-34.7748 0/0:10:10,0:10:398:0:0:0,-3.0103,-36.1776 dDocent_Contig_11737 22 . C A 289.358 . AB=0.317073;ABP=14.9269;AC=3;AF=0.375;AN=8;AO=13;CIGAR=1X;DP=62;DPB=62;DPRA=0.650794;EPP=31.2394;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=58.1633;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.959184;PAO=0;PQA=0;PQR=0;PRO=0;QA=506;QR=1979;RO=49;RPL=0;RPP=31.2394;RPPR=109.412;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:21:21,0:21:845:0:0:0,-6.32163,-71.6647 0/1:20:17,3:17:689:3:122:-5.35189,0,-56.3183 0/1:10:8,2:8:323:2:81:-4.67543,0,-26.4278 0/1:11:3,8:3:122:8:303:-24.3062,0,-8.06116 dDocent_Contig_11739 126 . C T 106.432 . AB=0.275862;ABP=15.6647;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X;DP=63;DPB=63;DPRA=2;EPP=22.5536;EPPR=120.27;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=256;QR=1706;RO=54;RPL=0;RPP=22.5536;RPPR=120.27;RPR=9;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=120.27;SRR=54;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:14:14,0:14:398:0:0:0,-4.21442,-36.0918 0/1:29:21,8:21:715:8:231:-12.3422,0,-55.9374 0/0:7:7,0:7:209:0:0:0,-2.10721,-19.1031 0/0:13:12,1:12:384:1:25:0,-1.41353,-32.3695 dDocent_Contig_11741 13 . T A 2024.75 . AB=0.13913;ABP=133.091;AC=1;AF=0.125;AN=8;AO=16;CIGAR=1X2M1X;DP=228;DPB=228;DPRA=0;EPP=37.7539;EPPR=307.016;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=630;QR=5491;RO=140;RPL=0;RPP=37.7539;RPPR=307.016;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=140;SRP=307.016;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:87:66,0,21:66:2578:0,21:0,852:-50.8017,-70.6697,-282.587,0,-212.319,-205.998 0|0:79:39,5,35:39:1528:5,35:196,1400:-103.578,-99.2012,-223.338,0,-109.529,-115.11 0|1:36:18,11,7:18:710:11,7:434,282:-30.2864,0,-55.1004,-12.4584,-35.166,-68.7688 0|0:26:17,0,9:17:675:0,9:0,363:-25.2073,-30.3248,-85.8893,0,-55.9652,-53.2559 dDocent_Contig_11742 7 . T A 343.862 . AB=0.32381;ABP=31.3222;AC=4;AF=0.5;AN=8;AO=34;CIGAR=1X;DP=105;DPB=105;DPRA=0;EPP=76.8404;EPPR=157.185;GTI=0;LEN=1;MEANALT=1;MQM=25.7059;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=0.0294118;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1266;QR=2722;RO=71;RPL=0;RPP=76.8404;RPPR=157.185;RPR=34;RUN=1;SAF=34;SAP=76.8404;SAR=0;SRF=71;SRP=157.185;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:3,8:3:115:8:303:-15.5272,0,-7.41356 0/1:53:46,7:46:1770:7:270:-2.89243,0,-143.601 0/1:32:19,13:19:721:13:490:-11.5466,0,-55.5868 0/1:9:3,6:3:116:6:203:-11.8043,0,-8.10843 dDocent_Contig_11743 7 . T G 316.951 . AB=0.352941;ABP=6.20364;AC=3;AF=0.375;AN=8;AO=12;CIGAR=1X;DP=30;DPB=30;DPRA=3.28571;EPP=29.068;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=59.75;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=417;QR=692;RO=18;RPL=0;RPP=29.068;RPPR=42.0968;RPR=12;RUN=1;SAF=0;SAP=29.068;SAR=12;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:11,6:11:423:6:210:-14.125,0,-33.3063 1/1:6:0,6:0:0:6:207:-18.9675,-1.80618,0 0/0:1:1,0:1:39:0:0:0,-0.30103,-3.89656 0/0:6:6,0:6:230:0:0:0,-1.80618,-21.0668 dDocent_Contig_11744 85 . A C 76.3651 . AB=0.6;ABP=3.44459;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X2M1X;DP=36;DPB=36;DPRA=0.483871;EPP=9.52472;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.939394;PAO=0;PQA=0;PQR=0;PRO=0;QA=113;QR=1236;RO=33;RPL=3;RPP=9.52472;RPPR=74.6689;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:5:2,3:2:76:3:113:-9.03439,0,-5.70966 0|0:13:13,0:13:491:0:0:0,-3.91339,-44.5363 0|0:13:13,0:13:479:0:0:0,-3.91339,-43.4493 0|0:5:5,0:5:190:0:0:0,-1.50515,-17.4674 dDocent_Contig_11745 29 . G A 290.311 . AB=0.295455;ABP=19.0002;AC=3;AF=0.375;AN=8;AO=13;CIGAR=1X1M1I2M;DP=55;DPB=58.25;DPRA=1.33333;EPP=31.2394;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.846154;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=517;QR=1566;RO=42;RPL=0;RPP=31.2394;RPPR=94.2121;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:20:14,6:14:504:6:239:-15.8644,0,-39.6692 0|0:11:11,0:11:415:0:0:0,-3.31133,-37.7011 0|1:18:13,5:13:497:5:198:-12.779,0,-39.6571 0|1:6:4,2:4:150:2:80:-5.78561,0,-12.0595 dDocent_Contig_11746 137 . G A 590.866 . AB=0.142857;ABP=41.7866;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1M1I4M1X;DP=111;DPB=125.167;DPRA=0;EPP=13.8677;EPPR=63.8115;GTI=0;LEN=1;MEANALT=3;MQM=44.2;MQMR=55.8214;NS=4;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=0.892857;PAO=0;PQA=0;PQR=0;PRO=0;QA=185;QR=1078;RO=28;RPL=0;RPP=13.8677;RPPR=63.8115;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=63.8115;SRR=28;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:40:7,0,0,32,0:7:265:0,0,32,0:0,0,515,0:-29.0966,-31.2038,-52.9697,-31.2038,-52.9697,-52.9697,0,-22.0308,-22.0308,-12.3979,-31.2038,-52.9697,-52.9697,-22.0308,-52.9697 0|0:30:9,0,5,16,0:9:338:0,5,16,0:0,105,259,0:-12.8688,-15.578,-39.355,-8.97094,-32.7617,-31.2566,0,-23.8184,-17.2726,-19.0019,-15.578,-39.355,-32.7617,-23.8184,-39.355 0|1:35:11,5,0,16,3:11:435:5,0,16,3:185,0,193,75:-11.5211,0,-34.3962,-14.8324,-35.9013,-50.703,-5.89495,-26.9616,-41.744,-36.9275,-9.78889,-30.8652,-45.6688,-36.734,-44.7657 0|0:6:1,0,0,5,0:1:40:0,0,5,0:0,0,163,0:-12.933,-13.234,-16.5423,-13.234,-16.5423,-16.5423,0,-3.69465,-3.69465,-2.1895,-13.234,-16.5423,-16.5423,-3.69465,-16.5423 dDocent_Contig_11747 170 . T C 33.1953 . AB=0.136364;ABP=28.2783;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=33;DPB=33;DPRA=4;EPP=9.52472;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=123;QR=1206;RO=30;RPL=3;RPP=9.52472;RPPR=68.1545;RPR=0;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=68.1545;SRR=30;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:19,3:19:760:3:123:-4.84213,0,-62.0972 0/0:5:5,0:5:201:0:0:0,-1.50515,-18.4711 0/0:6:6,0:6:245:0:0:0,-1.80618,-22.4295 ./.:.:.:.:.:.:.:. dDocent_Contig_11749 98 . N T 103.565 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=7.37776;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=112;QR=0;RO=0;RPL=4;RPP=11.6962;RPPR=0;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:4:0,4:0:0:4:112:-10.3562,-1.20412,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_11750 22 . C T 281.498 . AB=0.27907;ABP=21.2406;AC=2;AF=0.25;AN=8;AO=13;CIGAR=1X;DP=96;DPB=96;DPRA=0.770115;EPP=31.2394;EPPR=183.243;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.819277;PAO=0;PQA=0;PQR=0;PRO=0;QA=527;QR=3292;RO=83;RPL=0;RPP=31.2394;RPPR=183.243;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=83;SRP=183.243;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:19,8:19:750:8:327:-21.6723,0,-59.6931 0/0:24:23,1:23:914:1:41:0,-3.13015,-78.4666 0/0:29:29,0:29:1152:0:0:0,-8.72987,-103.96 0/1:16:12,4:12:476:4:159:-9.87547,0,-38.3746 dDocent_Contig_11752 7 . T A 316.58 . AB=0.294118;ABP=9.26925;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X1M1X2M2X;DP=53;DPB=53;DPRA=1.13889;EPP=18.2106;EPPR=81.1833;GTI=0;LEN=1;MEANALT=2;MQM=33.2857;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=0.777778;PAO=0;PQA=0;PQR=0;PRO=0;QA=271;QR=1386;RO=36;RPL=0;RPP=18.2106;RPPR=81.1833;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:24:21,2,0,0:21:810:2,0,0:79,0,0:0,-1.04554,-66.9449,-6.32163,-67.5469,-72.8652,-6.32163,-67.5469,-72.8652,-72.8652 0|0:11:3,3,5,0:3:117:3,5,0:114,193,0:-15.0219,-9.6762,-18.3918,0,-3.44681,-8.17358,-15.925,-19.2949,-9.67873,-25.5554 0|0:12:12,0,0,0:12:459:0,0,0:0,0,0:0,-3.61236,-41.6576,-3.61236,-41.6576,-41.6576,-3.61236,-41.6576,-41.6576,-41.6576 1|0:6:0,2,0,4:0:0:2,0,4:78,0,164:-20.0338,-13.9458,-13.3437,-20.0338,-13.9458,-20.0338,-6.47275,0,-6.47275,-5.26863 dDocent_Contig_11753 16 . T A 58.5243 . AB=0.230769;ABP=11.1951;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=74;DPB=74;DPRA=0.639344;EPP=9.52472;EPPR=157.185;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=123;QR=2809;RO=71;RPL=0;RPP=9.52472;RPPR=157.185;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=71;SRP=157.185;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:20:20,0:20:775:0:0:0,-6.0206,-70.0626 0/0:31:31,0:31:1237:0:0:0,-9.33193,-111.603 0/0:10:10,0:10:397:0:0:0,-3.0103,-36.0857 0/1:13:10,3:10:400:3:123:-7.5514,0,-32.4465 dDocent_Contig_11754 117 . G A 41.7469 . AB=0.357143;ABP=7.97367;AC=4;AF=0.5;AN=8;AO=10;CIGAR=1X;DP=28;DPB=28;DPRA=0;EPP=24.725;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=19.6;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=343;QR=597;RO=18;RPL=0;RPP=24.725;RPPR=42.0968;RPR=10;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=42.0968;SRR=18;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:6,3:6:204:3:106:-2.30828,0,-15.9843 0/1:5:4,1:4:116:1:36:-1.05356,0,-9.22104 0/1:12:7,5:7:242:5:165:-5.1869,0,-18.5052 0/1:2:1,1:1:35:1:36:-1.19122,0,-2.89657 dDocent_Contig_11758 20 . T C 207.619 . AB=0.315789;ABP=8.61041;AC=4;AF=0.5;AN=8;AO=8;CIGAR=1X;DP=28;DPB=28;DPRA=1;EPP=3.0103;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=319;QR=811;RO=20;RPL=0;RPP=20.3821;RPPR=46.4397;RPR=8;RUN=1;SAF=4;SAP=3.0103;SAR=4;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:7:7,0:7:286:0:0:0,-2.10721,-26.1148 0/1:7:5,2:5:202:2:80:-5.48436,0,-16.4549 0/1:12:8,4:8:323:4:157:-10.8955,0,-25.826 1/1:2:0,2:0:0:2:82:-7.77968,-0.60206,0 dDocent_Contig_11759 107 . N G 94.3358 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=7.37776;PAIRED=0.75;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=102;QR=0;RO=0;RPL=0;RPP=11.6962;RPPR=0;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:4:0,4:0:0:4:102:-9.43331,-1.20412,0 ./.:.:.:.:.:.:.:. dDocent_Contig_11761 44 . G A 96.5836 . AB=0.217391;ABP=18.9659;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=37;DPB=37;DPRA=3.28571;EPP=13.8677;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=197;QR=1284;RO=32;RPL=0;RPP=13.8677;RPPR=72.4974;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:18,5:18:725:5:197:-11.1812,0,-58.6517 0/0:7:7,0:7:278:0:0:0,-2.10721,-25.3896 0/0:7:7,0:7:281:0:0:0,-2.10721,-25.6626 ./.:.:.:.:.:.:.:. dDocent_Contig_11762 154 . C T 628.792 . AB=0.45098;ABP=4.07475;AC=4;AF=0.5;AN=8;AO=23;CIGAR=1X;DP=51;DPB=51;DPRA=0;EPP=52.9542;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=921;QR=1092;RO=28;RPL=0;RPP=52.9542;RPPR=63.8115;RPR=23;RUN=1;SAF=0;SAP=52.9542;SAR=23;SRF=0;SRP=63.8115;SRR=28;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:10,1:10:399:1:41:-0.783237,0,-32.9571 0/1:19:7,12:7:268:12:482:-38.012,0,-18.7568 0/1:11:8,3:8:310:3:123:-8.15346,0,-24.9487 0/1:10:3,7:3:115:7:275:-22.1052,0,-7.71291 dDocent_Contig_11763 51 . T C 192.858 . AB=0.32;ABP=10.0459;AC=2;AF=0.25;AN=8;AO=8;CIGAR=1X;DP=58;DPB=58;DPRA=0.757576;EPP=20.3821;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.875;PAIREDR=0.94;PAO=0;PQA=0;PQR=0;PRO=0;QA=327;QR=1993;RO=50;RPL=8;RPP=20.3821;RPPR=111.584;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:13:13,0:13:515:0:0:0,-3.91339,-46.6973 0/1:14:8,6:8:324:6:245:-18.2151,0,-25.315 0/1:11:9,2:9:350:2:82:-4.46835,0,-28.5483 0/0:20:20,0:20:804:0:0:0,-6.0206,-72.6761 dDocent_Contig_11764 68 . A C 33.913 . AB=0.222222;ABP=9.04217;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X;DP=21;DPB=21;DPRA=2.25;EPP=7.35324;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=79;QR=707;RO=19;RPL=2;RPP=7.35324;RPPR=44.2683;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:7,2:7:247:2:79:-4.78836,0,-19.8501 0/0:8:8,0:8:309:0:0:0,-2.40824,-28.1712 0/0:3:3,0:3:113:0:0:0,-0.90309,-10.5384 0/0:1:1,0:1:38:0:0:0,-0.30103,-3.79727 dDocent_Contig_11767 35 . C T 347.121 . AB=0.40625;ABP=5.45321;AC=2;AF=0.25;AN=8;AO=17;CIGAR=1X;DP=100;DPB=100;DPRA=6.33333;EPP=39.9253;EPPR=183.243;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=680;QR=3314;RO=83;RPL=0;RPP=39.9253;RPPR=183.243;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=83;SRP=183.243;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:63:59,4:59:2349:4:158:0,-4.36462,-196.965 0/1:28:18,10:18:729:10:401:-28.0202,0,-57.5036 0/0:5:5,0:5:195:0:0:0,-1.50515,-17.9204 0/1:4:1,3:1:41:3:121:-10.0761,0,-2.89045 dDocent_Contig_11769 9 . A G 2094.32 . AB=0.0689655;ABP=49.8093;AC=7;AF=0.875;AN=8;AO=2;CIGAR=2X2M1X1M1X;DP=128;DPB=128;DPRA=2.23077;EPP=7.35324;EPPR=65.983;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=77;QR=1109;RO=29;RPL=0;RPP=7.35324;RPPR=65.983;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:50:10,11,29,0:10:366:11,29,0:420,1132,0:-94.6159,-63.1737,-89.7605,-4.56623,0,-25.7332,-97.6262,-93.0718,-34.4631,-127.526 0|1:36:13,10,11,0:13:503:10,11,0:393,434,0:-31.7982,-3.38623,-41.6896,0,-8.98646,-38.003,-35.7116,-44.6999,-41.3143,-77.0259 1|1:29:6,9,11,2:6:240:9,11,2:333,434,77:-41.357,-15.9369,-33.0002,-7.44343,0,-23.9112,-36.841,-29.3885,-20.9001,-56.013 1|1:13:0,0,13,0:0:0:0,13,0:0,519,0:-47.059,-47.059,-47.059,-3.91339,-3.91339,0,-47.059,-47.059,-3.91339,-47.059 dDocent_Contig_11770 39 . T C 72.3264 . AB=0.375;ABP=4.09604;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=44;DPB=44;DPRA=0.444444;EPP=9.52472;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=123;QR=1644;RO=41;RPL=0;RPP=9.52472;RPPR=92.0407;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:19:19,0:19:763:0:0:0,-5.71957,-68.9925 0/0:17:17,0:17:679:0:0:0,-5.11751,-61.4397 0/1:8:5,3:5:202:3:123:-9.05655,0,-16.1538 ./.:.:.:.:.:.:.:. dDocent_Contig_11771 40 . G A 1753.79 . AB=0.655556;ABP=21.9262;AC=4;AF=0.5;AN=8;AO=59;CIGAR=1X;DP=90;DPB=90;DPRA=0;EPP=131.127;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.915254;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2317;QR=1243;RO=31;RPL=0;RPP=131.127;RPPR=70.3259;RPR=59;RUN=1;SAF=59;SAP=131.127;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:10,11:10:405:11:417:-31.5497,0,-30.4884 0/1:27:5,22:5:199:22:871:-70.5754,0,-10.1609 0/1:30:9,21:9:359:21:833:-66.2494,0,-23.6412 0/1:12:7,5:7:280:5:196:-14.4027,0,-21.9594 dDocent_Contig_11773 97 . T C 73.2423 . AB=0.333333;ABP=5.9056;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=34;DPB=34;DPRA=1.09091;EPP=11.6962;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=138;QR=1006;RO=30;RPL=4;RPP=11.6962;RPPR=68.1545;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:17:17,0:17:590:0:0:0,-5.11751,-53.4272 0/0:5:5,0:5:160:0:0:0,-1.50515,-14.7149 ./.:.:.:.:.:.:.:. 0/1:12:8,4:8:256:4:138:-9.14809,0,-19.7407 dDocent_Contig_11774 22 . T G 98.296 . AB=0.333333;ABP=6.62942;AC=2;AF=0.25;AN=8;AO=5;CIGAR=1X;DP=33;DPB=33;DPRA=0.833333;EPP=13.8677;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=185;QR=1112;RO=28;RPL=0;RPP=13.8677;RPPR=63.8115;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5,0:5:182:0:0:0,-1.50515,-16.7316 0/1:9:8,1:8:325:1:41:-1.3853,0,-26.9104 0/0:13:13,0:13:524:0:0:0,-3.91339,-47.5064 0/1:6:2,4:2:81:4:144:-11.5029,0,-5.87955 dDocent_Contig_11775 14 . G A 5748.82 . AB=0.656522;ABP=51.9534;AC=6;AF=0.75;AN=8;AO=151;CIGAR=1X4M;DP=230;DPB=230;DPRA=0;EPP=330.903;EPPR=72.4974;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5842;QR=1260;RO=32;RPL=0;RPP=330.903;RPPR=72.4974;RPR=151;RUN=1;SAF=151;SAP=330.903;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:92:8,32,52:8:310:32,52:1250,2027:-241.497,-141.144,-156.979,-77.2966,0,-87.11 1|1:56:1,12,42:1:40:12,42:459,1629:-167.917,-130.56,-130.243,-34.3773,0,-25.0306 0|1:50:17,2,31:17:673:2,31:78,1187:-92.2806,-90.9861,-145.78,0,-48.9854,-46.0644 0|1:32:6,0,26:6:237:0,26:0,999:-80.5843,-82.3905,-101.895,0,-19.8975,-12.0707 dDocent_Contig_11776 12 . G A 49.3089 . AB=0.142857;ABP=34.0313;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=79;DPB=79;DPRA=1.64706;EPP=11.6962;EPPR=165.871;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=163;QR=3017;RO=75;RPL=0;RPP=11.6962;RPPR=165.871;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=75;SRP=165.871;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:39:39,0:39:1574:0:0:0,-11.7402,-141.889 0/1:28:24,4:24:965:4:163:-6.62959,0,-78.7195 0/0:10:10,0:10:397:0:0:0,-3.0103,-36.0868 0/0:2:2,0:2:81:0:0:0,-0.60206,-7.68573 dDocent_Contig_11777 10 . C T 446.602 . AB=0.444444;ABP=3.9754;AC=2;AF=0.25;AN=8;AO=16;CIGAR=1X;DP=68;DPB=68;DPRA=1.125;EPP=37.7539;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=0.9375;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=646;QR=2061;RO=52;RPL=0;RPP=37.7539;RPPR=115.927;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:32:17,15:17:687:15:605:-45.1538,0,-52.5265 0/0:29:29,0:29:1148:0:0:0,-8.72987,-103.6 0/1:4:3,1:3:121:1:41:-2.89045,0,-10.0759 0/0:3:3,0:3:105:0:0:0,-0.90309,-9.79159 dDocent_Contig_11778 25 . A G 63.8585 . AB=0.272727;ABP=7.94546;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=41;DPB=41;DPRA=1.1;EPP=9.52472;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=119;QR=1424;RO=38;RPL=0;RPP=9.52472;RPPR=85.5263;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:8,3:8:306:3:119:-7.78317,0,-24.588 0/0:22:22,0:22:837:0:0:0,-6.62266,-75.6421 0/0:7:7,0:7:249:0:0:0,-2.10721,-22.7536 0/0:1:1,0:1:32:0:0:0,-0.30103,-3.19931 dDocent_Contig_11780 7 . T G 481.389 . AB=0.367647;ABP=13.3567;AC=2;AF=0.25;AN=8;AO=27;CIGAR=1X;DP=99;DPB=99;DPRA=2.96667;EPP=61.6401;EPPR=159.356;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=838;QR=2724;RO=72;RPL=0;RPP=61.6401;RPPR=159.356;RPR=27;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=72;SRP=159.356;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:53:30,23:30:1113:23:724:-49.4901,0,-84.5137 0/1:15:13,2:13:502:2:65:-1.65675,0,-41.0127 0/0:21:19,2:19:722:2:49:0,-1.6669,-60.6521 0/0:10:10,0:10:387:0:0:0,-3.0103,-35.1875 dDocent_Contig_11781 78 . G C 80.6892 . AB=0.444444;ABP=3.25157;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=49;DPB=49;DPRA=0.675;EPP=11.6962;EPPR=98.5551;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=0.931818;PAO=0;PQA=0;PQR=0;PRO=0;QA=133;QR=1393;RO=44;RPL=4;RPP=11.6962;RPPR=98.5551;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:18:18,0:18:562:0:0:0,-5.41854,-50.8794 0/0:11:11,0:11:354:0:0:0,-3.31133,-32.1737 0/1:9:4,4:4:135:4:133:-9.76789,0,-9.95184 0/0:11:11,0:11:342:0:0:0,-3.31133,-31.0826 dDocent_Contig_11783 27 . C T 711.488 . AB=0.230769;ABP=93.0429;AC=3;AF=0.375;AN=8;AO=33;CIGAR=1X;DP=151;DPB=151;DPRA=5.95833;EPP=74.6689;EPPR=259.244;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.939394;PAIREDR=0.872881;PAO=0;PQA=0;PQR=0;PRO=0;QA=1317;QR=4685;RO=118;RPL=0;RPP=74.6689;RPPR=259.244;RPR=33;RUN=1;SAF=33;SAP=74.6689;SAR=0;SRF=118;SRP=259.244;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:65:53,12:53:2112:12:475:-23.5324,0,-170.703 0/1:52:41,11:41:1637:11:446:-24.842,0,-131.909 0/1:26:16,10:16:622:10:396:-28.1722,0,-48.4854 0/0:8:8,0:8:314:0:0:0,-2.40824,-28.6223 dDocent_Contig_11784 8 . T C 405.781 . AB=0.21875;ABP=68.9688;AC=1;AF=0.125;AN=8;AO=34;CIGAR=1X;DP=324;DPB=324;DPRA=0;EPP=76.8404;EPPR=632.737;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=56.6276;NS=4;NUMALT=1;ODDS=0;PAIRED=0.352941;PAIREDR=0.251724;PAO=0;PQA=0;PQR=0;PRO=0;QA=1274;QR=11173;RO=290;RPL=0;RPP=76.8404;RPPR=632.737;RPR=34;RUN=1;SAF=34;SAP=76.8404;SAR=0;SRF=290;SRP=632.737;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:96:75,21:75:2873:21:784:-41.9761,0,-215.439 0/0:113:104,9:104:4016:9:338:0,-3.24439,-316.351 0/0:64:61,3:61:2362:3:113:0,-8.72694,-187.745 0/0:51:50,1:50:1922:1:39:0,-11.456,-164.41 dDocent_Contig_11785 22 . A G 32.577 . AB=0.145833;ABP=55.3066;AC=2;AF=0.25;AN=8;AO=9;CIGAR=1X;DP=118;DPB=118;DPRA=0.503546;EPP=22.5536;EPPR=72.358;GTI=0;LEN=1;MEANALT=1;MQM=59.3333;MQMR=55.3761;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.229358;PAO=0;PQA=0;PQR=0;PRO=0;QA=295;QR=3776;RO=109;RPL=0;RPP=22.5536;RPPR=239.701;RPR=9;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=25;SRP=72.358;SRR=84;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:23:21,2:21:733:2:68:0,-0.465814,-59.7761 0/0:47:47,0:47:1615:0:0:0,-14.1484,-145.499 0/1:35:30,5:30:1055:5:157:-3.90385,0,-83.6506 0/1:13:11,2:11:373:2:70:-2.73015,0,-29.9595 dDocent_Contig_11786 35 . C A 640.368 . AB=0.444444;ABP=3.9754;AC=5;AF=0.625;AN=8;AO=24;CIGAR=1X1M1X1M1D3M1X;DP=44;DPB=41.3333;DPRA=0;EPP=55.1256;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=43;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.291667;PAIREDR=0.85;PAO=0;PQA=0;PQR=0;PRO=0;QA=946;QR=797;RO=20;RPL=0;RPP=55.1256;RPPR=46.4397;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:8:0,8:0:0:8:317:-25.3686,-2.40824,0 0|1:10:2,8:2:80:8:313:-24.277,0,-4.58149 0|1:14:7,7:7:279:7:277:-17.7867,0,-21.2667 0|1:12:11,1:11:438:1:39:-0.284205,0,-36.1631 dDocent_Contig_11787 9 . A C 73.8438 . AB=0.4;ABP=5.18177;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X2M1X;DP=26;DPB=26;DPRA=12.5;EPP=24.725;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=18;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=398;QR=621;RO=16;RPL=0;RPP=24.725;RPPR=37.7539;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:14:6,8:6:234:8:318:-8.90469,0,-17.2158 0|1:11:9,2:9:348:2:80:-0.103562,0,-28.3668 .:.:.:.:.:.:.:. 0|0:1:1,0:1:39:0:0:0,-0.30103,-3.89656 dDocent_Contig_11788 33 . G C 1317.39 . AB=0.765957;ABP=31.8863;AC=6;AF=0.75;AN=8;AO=41;CIGAR=1X;DP=52;DPB=52;DPRA=0;EPP=92.0407;EPPR=26.8965;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1643;QR=426;RO=11;RPL=0;RPP=92.0407;RPPR=26.8965;RPR=41;RUN=1;SAF=41;SAP=92.0407;SAR=0;SRF=11;SRP=26.8965;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:5,19:5:192:19:762:-61.6761,0,-10.4251 0/1:23:6,17:6:234:17:686:-55.1467,0,-14.5053 1/1:3:0,3:0:0:3:115:-10.7224,-0.90309,0 1/1:2:0,2:0:0:2:80:-7.59179,-0.60206,0 dDocent_Contig_11789 148 . C A 55.7867 . AB=0.139535;ABP=51.5402;AC=2;AF=0.25;AN=8;AO=6;CIGAR=1X;DP=68;DPB=68;DPRA=1.72;EPP=16.0391;EPPR=137.642;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=235;QR=2421;RO=62;RPL=0;RPP=16.0391;RPPR=137.642;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=137.642;SRR=62;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:19:19,0:19:746:0:0:0,-5.71957,-67.4567 0/1:41:36,5:36:1393:5:196:-5.67315,0,-113.288 0/0:6:6,0:6:241:0:0:0,-1.80618,-22.0658 0/1:2:1,1:1:41:1:39:-3.2945,0,-3.49251 dDocent_Contig_11790 10 . A C 404.138 . AB=0.232558;ABP=56.4386;AC=3;AF=0.375;AN=8;AO=20;CIGAR=1X;DP=89;DPB=89;DPRA=9.55556;EPP=46.4397;EPPR=150.67;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=784;QR=2728;RO=68;RPL=0;RPP=46.4397;RPPR=150.67;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=68;SRP=150.67;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:25,6:25:999:6:237:-12.3694,0,-80.8745 0/1:42:30,11:30:1211:11:433:-26.7264,0,-96.6765 0/1:13:10,3:10:396:3:114:-6.71583,0,-32.0845 0/0:3:3,0:3:122:0:0:0,-0.90309,-11.3725 dDocent_Contig_11791 143 . G T 94.0388 . AB=0.263158;ABP=12.2676;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=35;DPB=35;DPRA=3.5625;EPP=13.8677;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.6667;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.6;PAO=0;PQA=0;PQR=0;PRO=0;QA=183;QR=1146;RO=30;RPL=0;RPP=13.8677;RPPR=68.1545;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=68.1545;SRR=30;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:1:1,0:1:39:0:0:0,-0.30103,-3.89656 0/0:4:4,0:4:141:0:0:0,-1.20412,-13.0305 0/0:11:11,0:11:429:0:0:0,-3.31133,-38.9656 0/1:19:14,5:14:537:5:183:-11.1022,0,-42.9548 dDocent_Contig_11794 22 . T C 83.0713 . AB=0.162162;ABP=39.6906;AC=2;AF=0.25;AN=8;AO=6;CIGAR=1X;DP=49;DPB=49;DPRA=3.08333;EPP=16.0391;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.767442;PAO=0;PQA=0;PQR=0;PRO=0;QA=245;QR=1702;RO=43;RPL=0;RPP=16.0391;RPPR=96.3836;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:10:10,0:10:405:0:0:0,-3.0103,-36.81 0/1:22:18,4:18:700:4:164:-8.52724,0,-56.6995 0/1:15:13,2:13:522:2:81:-3.17028,0,-42.8115 0/0:2:2,0:2:75:0:0:0,-0.60206,-7.1188 dDocent_Contig_11796 171 . C A 592.737 . AB=0.740741;ABP=16.6021;AC=1;AF=0.125;AN=8;AO=24;CIGAR=1X;DP=97;DPB=97;DPRA=4.70588;EPP=55.1256;EPPR=161.528;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=890;QR=2893;RO=73;RPL=24;RPP=55.1256;RPPR=161.528;RPR=0;RUN=1;SAF=0;SAP=55.1256;SAR=24;SRF=0;SRP=161.528;SRR=73;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:7,20:7:254:20:761:-60.6717,0,-15.0719 0/0:53:49,4:49:1951:4:129:0,-4.03066,-163.864 0/0:6:6,0:6:245:0:0:0,-1.80618,-22.4295 0/0:11:11,0:11:443:0:0:0,-3.31133,-40.2241 dDocent_Contig_11798 9 . A G 113.693 . AB=0.141026;ABP=90.3146;AC=3;AF=0.375;AN=8;AO=13;CIGAR=1X;DP=113;DPB=113;DPRA=0;EPP=11.1951;EPPR=178.9;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.71;PAO=0;PQA=0;PQR=0;PRO=0;QA=497;QR=3803;RO=100;RPL=0;RPP=31.2394;RPPR=220.158;RPR=13;RUN=1;SAF=10;SAP=11.1951;SAR=3;SRF=95;SRP=178.9;SRR=5;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:41:35,6:35:1325:6:230:-8.72442,0,-107.193 0/0:35:33,2:33:1268:2:78:0,-3.13258,-107.005 0/1:26:22,4:22:831:4:150:-6.03867,0,-67.283 0/1:11:10,1:10:379:1:39:-0.585235,0,-31.1524 dDocent_Contig_11799 18 . C A 216.377 . AB=0.277778;ABP=18.4519;AC=3;AF=0.375;AN=8;AO=10;CIGAR=1X;DP=62;DPB=62;DPRA=0.461538;EPP=24.725;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=397;QR=2035;RO=52;RPL=0;RPP=24.725;RPPR=115.927;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:26:26,0:26:1007:0:0:0,-7.82678,-90.9174 0/1:23:18,5:18:720:5:198:-11.2739,0,-58.2041 0/1:8:7,1:7:278:1:40:-1.58744,0,-22.982 0/1:5:1,4:1:30:4:159:-13.1863,0,-1.49442 dDocent_Contig_11800 29 . C G 51.8464 . AB=0.666667;ABP=3.73412;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=49;DPB=49;DPRA=3.75;EPP=11.6962;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=163;QR=1811;RO=45;RPL=0;RPP=11.6962;RPPR=100.727;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:23:22,1:22:888:1:40:0,-2.92801,-76.2331 0/0:19:18,1:18:722:1:41:0,-1.625,-61.2101 0/0:4:4,0:4:160:0:0:0,-1.20412,-14.7834 0/1:3:1,2:1:41:2:82:-6.87659,0,-3.19148 dDocent_Contig_11801 107 . N C 127.607 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=7.37776;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=138;QR=0;RO=0;RPL=0;RPP=11.6962;RPPR=0;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:4:0,4:0:0:4:138:-12.7604,-1.20412,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_11803 78 . A G 353.094 . AB=0.405405;ABP=5.88603;AC=3;AF=0.375;AN=8;AO=15;CIGAR=1X;DP=84;DPB=84;DPRA=0.262411;EPP=35.5824;EPPR=152.842;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=563;QR=2691;RO=69;RPL=15;RPP=35.5824;RPPR=152.842;RPR=0;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=69;SRP=152.842;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:14,10:14:561:10:378:-27.1475,0,-43.6084 0/0:47:47,0:47:1811:0:0:0,-14.1484,-163.199 0/1:6:5,1:5:197:1:39:-2.09038,0,-16.2986 0/1:7:3,4:3:122:4:146:-11.3892,0,-9.26528 dDocent_Contig_11804 25 . C T 102.833 . AB=0.4;ABP=3.87889;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=37;DPB=37;DPRA=1.11111;EPP=11.6962;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=159;QR=1324;RO=33;RPL=0;RPP=11.6962;RPPR=74.6689;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:6,4:6:244:4:159:-11.6811,0,-19.3283 0/0:16:16,0:16:637:0:0:0,-4.81648,-57.6562 0/0:5:5,0:5:199:0:0:0,-1.50515,-18.2878 0/0:6:6,0:6:244:0:0:0,-1.80618,-22.3386 dDocent_Contig_11805 32 . G T 194.67 . AB=0.203704;ABP=44.1879;AC=3;AF=0.375;AN=8;AO=11;CIGAR=1X;DP=74;DPB=74;DPRA=0.9;EPP=26.8965;EPPR=139.813;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=444;QR=2542;RO=63;RPL=0;RPP=26.8965;RPPR=139.813;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=63;SRP=139.813;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:15,3:15:605:3:120:-5.76915,0,-49.3693 0/1:19:16,3:16:650:3:121:-5.56042,0,-53.1139 0/0:20:20,0:20:805:0:0:0,-6.0206,-72.7661 0/1:17:12,5:12:482:5:203:-13.5353,0,-38.6127 dDocent_Contig_11806 27 . C T 656.477 . AB=0.489796;ABP=3.05462;AC=4;AF=0.5;AN=8;AO=24;CIGAR=1X;DP=49;DPB=49;DPRA=0;EPP=55.1256;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=58.5;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=967;QR=1003;RO=25;RPL=0;RPP=55.1256;RPPR=57.2971;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:7,12:7:281:12:482:-37.2746,0,-19.9419 0/1:14:8,6:8:324:6:243:-18.0332,0,-25.3148 0/1:12:8,4:8:316:4:163:-11.4448,0,-25.1906 0/1:4:2,2:2:82:2:79:-6.29312,0,-6.57556 dDocent_Contig_11807 137 . G C 38.4871 . AB=0.25;ABP=7.35324;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=26;DPB=26;DPRA=0.888889;EPP=7.35324;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.958333;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=975;RO=24;RPL=0;RPP=7.35324;RPPR=55.1256;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=55.1256;SRR=24;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:8:6,2:6:245:2:82:-5.37144,0,-20.0212 0/0:14:14,0:14:569:0:0:0,-4.21442,-51.5523 0/0:4:4,0:4:161:0:0:0,-1.20412,-14.8753 ./.:.:.:.:.:.:.:. dDocent_Contig_11808 146 . T G 31.4514 . AB=0.25;ABP=7.35324;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X;DP=31;DPB=31;DPRA=1.04348;EPP=7.35324;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=42;MQMR=53.6897;NS=4;NUMALT=1;ODDS=8.67362e-19;PAIRED=0;PAIREDR=0.517241;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=1165;RO=29;RPL=0;RPP=7.35324;RPPR=65.983;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=65.983;SRR=29;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:10:10,0:10:405:0:0:0,-3.0103,-32.3629 0/1:8:6,2:6:233:2:81:-4.84376,0,-18.9281 0/0:8:8,0:8:327:0:0:0,-2.40824,-29.8001 0/0:5:5,0:5:200:0:0:0,-1.50515,-16.6281 dDocent_Contig_11809 111 . G A 404.415 . AB=0.514286;ABP=3.07234;AC=3;AF=0.375;AN=8;AO=18;CIGAR=1X;DP=37;DPB=37;DPRA=5.83333;EPP=42.0968;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=40;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=639;QR=658;RO=19;RPL=0;RPP=42.0968;RPPR=44.2683;RPR=18;RUN=1;SAF=0;SAP=42.0968;SAR=18;SRF=0;SRP=44.2683;SRR=19;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:7,6:7:242:6:213:-14.8834,0,-18.2043 0/0:2:2,0:2:70:0:0:0,-0.60206,-6.6474 0/1:10:8,2:8:276:2:68:-3.2508,0,-22.1656 0/1:12:2,10:2:70:10:358:-27.6892,0,-3.03504 dDocent_Contig_11810 175 . C T 249.559 . AB=0.34375;ABP=9.79615;AC=3;AF=0.5;AN=6;AO=11;CIGAR=1X;DP=32;DPB=32;DPRA=0;EPP=26.8965;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=433;QR=816;RO=21;RPL=11;RPP=26.8965;RPPR=48.6112;RPR=0;RUN=1;SAF=0;SAP=26.8965;SAR=11;SRF=0;SRP=48.6112;SRR=21;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:11,5:11:436:5:198:-13.38,0,-34.776 0/1:8:6,2:6:216:2:81:-5.27749,0,-17.3742 0/1:8:4,4:4:164:4:154:-11.8212,0,-12.7417 ./.:.:.:.:.:.:.:. dDocent_Contig_11811 51 . G A 170.582 . AB=0.186047;ABP=39.8243;AC=4;AF=0.666667;AN=6;AO=10;CIGAR=1X;DP=45;DPB=45;DPRA=0;EPP=24.725;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=361;QR=1367;RO=35;RPL=10;RPP=24.725;RPPR=79.0118;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:70:-6.64451,-0.60206,0 0/1:33:28,5:28:1090:5:191:-7.62227,0,-88.4465 ./.:.:.:.:.:.:.:. 0/1:10:7,3:7:277:3:100:-6.3139,0,-22.2891 dDocent_Contig_11812 96 . G A 195.56 . AB=0.45;ABP=3.44459;AC=2;AF=0.25;AN=8;AO=9;CIGAR=1X;DP=34;DPB=34;DPRA=1.42857;EPP=22.5536;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=0.222222;PAIREDR=0.68;PAO=0;PQA=0;PQR=0;PRO=0;QA=314;QR=849;RO=25;RPL=9;RPP=22.5536;RPPR=57.2971;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:10:10,0:10:340:0:0:0,-3.0103,-30.9295 0/1:17:9,8:9:308:8:279:-20.3315,0,-22.9348 0/1:3:2,1:2:63:1:35:-2.59554,0,-5.08068 0/0:4:4,0:4:138:0:0:0,-1.20412,-12.7604 dDocent_Contig_11813 29 . T A 228.415 . AB=0.222222;ABP=39.2015;AC=2;AF=0.25;AN=8;AO=12;CIGAR=1X;DP=101;DPB=101;DPRA=1.14894;EPP=29.068;EPPR=196.271;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=464;QR=3337;RO=89;RPL=0;RPP=29.068;RPPR=196.271;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=89;SRP=196.271;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:22:22,0:22:829:0:0:0,-6.62266,-74.9301 0/0:25:25,0:25:940:0:0:0,-7.52575,-84.9065 0/1:31:27,4:27:1027:4:160:-5.45187,0,-83.3987 0/1:23:15,8:15:541:8:304:-20.7875,0,-42.0924 dDocent_Contig_11814 35 . C T 56.7211 . AB=0.156863;ABP=55.1682;AC=3;AF=0.375;AN=8;AO=8;CIGAR=1X;DP=52;DPB=52;DPRA=17;EPP=20.3821;EPPR=12.6832;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.4091;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.659091;PAO=0;PQA=0;PQR=0;PRO=0;QA=263;QR=1697;RO=44;RPL=0;RPP=20.3821;RPPR=98.5551;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=29;SRP=12.6832;SRR=15;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:11,1:11:439:1:39:-0.284205,0,-36.248 0/1:29:25,4:25:947:4:124:-2.73125,0,-76.7588 0/1:10:7,3:7:276:3:100:-6.31656,0,-22.1939 0/0:1:1,0:1:35:0:0:0,-0.30103,-3.49863 dDocent_Contig_11815 39 . A T 555.541 . AB=0.37931;ABP=10.3484;AC=3;AF=0.375;AN=8;AO=24;CIGAR=1X;DP=94;DPB=94;DPRA=0;EPP=55.1256;EPPR=155.013;GTI=0;LEN=1;MEANALT=1;MQM=58.625;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.791667;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=937;QR=2706;RO=70;RPL=0;RPP=55.1256;RPPR=155.013;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=70;SRP=155.013;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:36:34,2:34:1319:2:78:0,-4.50766,-112.662 0/1:46:31,15:31:1196:15:587:-39.323,0,-94.0839 0/1:7:2,5:2:75:5:192:-15.5426,0,-5.01289 0/1:5:3,2:3:116:2:80:-6.08642,0,-9.31255 dDocent_Contig_11818 16 . C G 110.617 . AB=0;ABP=0;AC=0;AF=0;AN=6;AO=3;CIGAR=1X1M1X;DP=78;DPB=78;DPRA=0;EPP=9.52472;EPPR=157.185;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=3.46945e-18;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=121;QR=2805;RO=71;RPL=0;RPP=9.52472;RPPR=157.185;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=71;SRP=157.185;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:38:36,2,0:36:1437:2,0:81,0:0,-3.75341,-121.896,-10.8371,-122.498,-129.178 0|0:34:33,1,0:33:1288:1,0:40,0:0,-6.23934,-112.2,-9.93399,-112.501,-115.797 0|0:6:2,0,4:2:80:0,4:0,159:-12.8856,-13.4876,-20.0784,0,-6.98951,-5.78539 .:.:.:.:.:.:.:. dDocent_Contig_11819 59 . T A 119.431 . AB=0.125;ABP=22.5536;AC=0;AF=0;AN=6;AO=2;CIGAR=2X;DP=33;DPB=33;DPRA=1.88235;EPP=7.35324;EPPR=59.4686;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=80;QR=1031;RO=26;RPL=2;RPP=7.35324;RPPR=59.4686;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:16:16,0,0:16:629:0,0:0,0:0,-4.81648,-56.9393,-4.81648,-56.9393,-56.9393 0|0:16:9,2,5:9:361:2,5:80,200:-13.7656,-9.88466,-39.0271,0,-23.1547,-28.2395 0|0:1:1,0,0:1:41:0,0:0,0:0,-0.30103,-4.09457,-0.30103,-4.09457,-4.09457 .:.:.:.:.:.:.:. dDocent_Contig_11820 17 . C T 265.542 . AB=0.237288;ABP=38.3795;AC=2;AF=0.25;AN=8;AO=15;CIGAR=1X;DP=110;DPB=110;DPRA=0.631579;EPP=35.5824;EPPR=209.3;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=560;QR=3757;RO=95;RPL=0;RPP=35.5824;RPPR=209.3;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=95;SRP=209.3;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:44:32,12:32:1274:12:445:-27.1408,0,-101.689 0/0:38:38,0:38:1517:0:0:0,-11.4391,-136.765 0/1:15:13,2:13:487:2:77:-2.79338,0,-39.6492 0/0:13:12,1:12:479:1:38:0,-0.116121,-39.6637 dDocent_Contig_11821 107 . N A 55.1036 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=58;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:58:-5.50928,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_11822 13 . T A 315.265 . AB=0.571429;ABP=3.63072;AC=3;AF=0.375;AN=8;AO=11;CIGAR=1X3M1X;DP=28;DPB=28;DPRA=1.54545;EPP=26.8965;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1.5;MQM=58;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=406;QR=637;RO=16;RPL=0;RPP=26.8965;RPPR=37.7539;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:14:5,8:5:202:8:296:-22.6665,0,-14.2402 0|0:8:8,0:8:320:0:0:0,-2.40824,-29.1685 0|0:3:3,0:3:115:0:0:0,-0.90309,-10.7249 1|1:3:0,3:0:0:3:110:-10.2577,-0.90309,0 dDocent_Contig_11823 38 . G A 2798.94 . AB=0.359375;ABP=14.0034;AC=5;AF=0.625;AN=8;AO=23;CIGAR=2M1X;DP=138;DPB=220;DPRA=0;EPP=52.9542;EPPR=74.6689;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=911;QR=1296;RO=33;RPL=0;RPP=52.9542;RPPR=74.6689;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:64:13,28,23:13:517:28,23:1096,911:-118.598,-32.403,-66.5423,-47.5376,0,-83.1834 0|1:49:13,36,0:13:502:36,0:1417,0:-113.039,0,-30.7723,-116.952,-41.6094,-158.174 0|1:16:6,10,0:6:236:10,0:374,0:-29.1891,0,-16.7957,-30.9952,-19.806,-50.4155 0|1:9:1,8,0:1:41:8,0:313,0:-25.8255,0,-1.3853,-26.1265,-3.79354,-29.5126 dDocent_Contig_11824 33 . T C 156.134 . AB=0.333333;ABP=7.35324;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=37;DPB=37;DPRA=2.84211;EPP=16.0391;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=245;QR=1235;RO=31;RPL=0;RPP=16.0391;RPPR=70.3259;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:12,6:12:482:6:245:-17.0109,0,-38.3118 0/0:14:14,0:14:554:0:0:0,-4.21442,-50.199 0/0:3:3,0:3:120:0:0:0,-0.90309,-11.1873 0/0:2:2,0:2:79:0:0:0,-0.60206,-7.49724 dDocent_Contig_11825 76 . T A 179.487 . AB=0.583333;ABP=3.73412;AC=2;AF=0.25;AN=8;AO=7;CIGAR=1X;DP=56;DPB=56;DPRA=0.272727;EPP=18.2106;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=269;QR=1823;RO=49;RPL=7;RPP=18.2106;RPPR=109.412;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:25:25,0:25:944:0:0:0,-7.52575,-85.2707 0/1:7:2,5:2:78:5:192:-15.5426,0,-5.29626 0/0:19:19,0:19:687:0:0:0,-5.71957,-62.1495 0/1:5:3,2:3:114:2:77:-5.80399,0,-9.12707 dDocent_Contig_11826 68 . A T 51.5252 . AB=0.266667;ABP=10.1038;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X3M1X;DP=24;DPB=24;DPRA=3.33333;EPP=11.6962;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=121;QR=655;RO=20;RPL=4;RPP=11.6962;RPPR=46.4397;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:15:11,4:11:362:4:121:-6.67502,0,-28.3847 0|0:7:7,0:7:235:0:0:0,-2.10721,-21.479 .:.:.:.:.:.:.:. 0|0:2:2,0:2:58:0:0:0,-0.60206,-5.50935 dDocent_Contig_11830 23 . A G 121.456 . AB=0.5;ABP=3.0103;AC=4;AF=0.5;AN=8;AO=4;CIGAR=1M1X;DP=32;DPB=33;DPRA=0;EPP=11.6962;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.25;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=157;QR=989;RO=26;RPL=0;RPP=11.6962;RPPR=59.4686;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:2:0,0,2:0:0:0,2:0,82:-7.77968,-7.77968,-7.77968,-0.60206,-0.60206,0 0|1:11:9,2,0:9:352:2,0:80,0:-4.26233,0,-28.7301,-6.9716,-29.3322,-35.9066 0|0:17:16,0,1:16:597:0,1:0,34:0,-4.81648,-53.7161,-1.7186,-50.96,-50.659 0|1:2:1,0,1:1:40:0,1:0,41:-3.49251,-3.79354,-7.08367,0,-3.69465,-3.39362 dDocent_Contig_11831 49 . A T 2189.41 . AB=0.189189;ABP=65.1027;AC=1;AF=0.125;AN=8;AO=14;CIGAR=2M1X13M;DP=195;DPB=180.5;DPRA=0;EPP=33.4109;EPPR=211.472;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=553;QR=3771;RO=96;RPL=14;RPP=33.4109;RPPR=211.472;RPR=0;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=96;SRP=211.472;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:54:8,5,30,11:8:314:5,30,11:187,1112,431:-98.159,-85.2552,-109.577,-9.61542,-20.1328,-26.4105,-65.1239,-75.6396,0,-87.6404 0|0:87:62,0,24,0:62:2436:0,24,0:0,938,0:-58.7443,-77.4082,-277.776,0,-200.665,-193.44,-77.4082,-277.776,-200.665,-277.776 0|0:34:14,0,20,0:14:559:0,20,0:0,758,0:-58.3055,-62.5199,-108.57,0,-46.4408,-40.4202,-62.5199,-108.57,-46.4408,-108.57 0|0:20:12,0,5,3:12:462:0,5,3:0,181,122:-11.1304,-14.7427,-52.6773,0,-37.9136,-36.4085,-4.66281,-42.6098,-27.8461,-41.7068 dDocent_Contig_11834 59 . A G 66.3754 . AB=0.428571;ABP=3.32051;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=51;DPB=51;DPRA=0.477273;EPP=9.52472;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=0.854167;PAO=0;PQA=0;PQR=0;PRO=0;QA=112;QR=1891;RO=48;RPL=3;RPP=9.52472;RPPR=107.241;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:9:9,0:9:356:0:0:0,-2.70927,-32.4005 0/0:17:17,0:17:677:0:0:0,-5.11751,-61.261 0/0:18:18,0:18:699:0:0:0,-5.41854,-63.242 0/1:7:4,3:4:159:3:112:-8.33651,0,-12.5847 dDocent_Contig_11835 133 . A G 47.8628 . AB=0.25;ABP=9.52472;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=41;DPB=41;DPRA=1.24138;EPP=9.52472;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=105;QR=1289;RO=38;RPL=0;RPP=9.52472;RPPR=85.5263;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=85.5263;SRR=38;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:9,3:9:307:3:105:-6.1838,0,-24.3477 0/0:24:24,0:24:806:0:0:0,-7.22472,-72.8494 0/0:3:3,0:3:105:0:0:0,-0.90309,-9.79616 0/0:2:2,0:2:71:0:0:0,-0.60206,-6.74206 dDocent_Contig_11837 164 . G A 62.1954 . AB=0.173913;ABP=24.253;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=57;DPB=57;DPRA=1.35294;EPP=11.6962;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=162;QR=2101;RO=53;RPL=4;RPP=11.6962;RPPR=118.098;RPR=0;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=118.098;SRR=53;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:31:31,0:31:1218:0:0:0,-9.33193,-109.877 0/1:23:19,4:19:761:4:162:-8.04327,0,-61.8842 0/0:3:3,0:3:122:0:0:0,-0.90309,-11.3725 ./.:.:.:.:.:.:.:. dDocent_Contig_11838 47 . A T 259.591 . AB=0.275;ABP=20.5992;AC=2;AF=0.25;AN=8;AO=13;CIGAR=1X;DP=70;DPB=70;DPRA=7.44444;EPP=31.2394;EPPR=126.784;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.736842;PAO=0;PQA=0;PQR=0;PRO=0;QA=518;QR=2211;RO=57;RPL=0;RPP=31.2394;RPPR=126.784;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:9,9:9:359:9:360:-27.3443,0,-27.2551 0/0:27:25,2:25:959:2:77:0,-0.81961,-79.3034 0/1:22:20,2:20:776:2:81:-1.06307,0,-63.5363 0/0:3:3,0:3:117:0:0:0,-0.90309,-10.9102 dDocent_Contig_11839 42 . G T 167.383 . AB=0.291667;ABP=12.0581;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=77;DPB=77;DPRA=1.75;EPP=20.3821;EPPR=152.842;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=290;QR=2773;RO=69;RPL=0;RPP=20.3821;RPPR=152.842;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=69;SRP=152.842;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:13:13,0:13:523:0:0:0,-3.91339,-47.417 0/1:24:17,7:17:687:7:281:-18.4373,0,-54.9345 0/0:25:24,1:24:955:1:9:0,-6.62575,-85.3442 0/0:15:15,0:15:608:0:0:0,-4.51545,-55.0585 dDocent_Contig_11841 74 . A G 36.8761 . AB=0.129032;ABP=40.0654;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=61;DPB=61;DPRA=3.1;EPP=11.6962;EPPR=126.784;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=156;QR=2153;RO=57;RPL=4;RPP=11.6962;RPPR=126.784;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:27,4:27:1011:4:156:-5.08536,0,-81.9581 0/0:21:21,0:21:809:0:0:0,-6.32163,-73.1256 0/0:4:4,0:4:154:0:0:0,-1.20412,-14.2327 0/0:5:5,0:5:179:0:0:0,-1.50515,-16.4581 dDocent_Contig_11842 15 . A G 313.907 . AB=0.611111;ABP=4.9405;AC=1;AF=0.125;AN=8;AO=11;CIGAR=1X;DP=55;DPB=55;DPRA=1.45946;EPP=26.8965;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=424;QR=1757;RO=44;RPL=0;RPP=26.8965;RPPR=98.5551;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:4:4,0:4:154:0:0:0,-1.20412,-14.2294 0/1:18:7,11:7:276:11:424:-33.0896,0,-19.7884 0/0:28:28,0:28:1128:0:0:0,-8.42884,-101.803 0/0:5:5,0:5:199:0:0:0,-1.50515,-18.2878 dDocent_Contig_11846 22 . T A 663.417 . AB=0.217105;ABP=108.67;AC=4;AF=0.5;AN=8;AO=33;CIGAR=1X2M1X;DP=152;DPB=152;DPRA=0;EPP=74.6689;EPPR=246.215;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.955357;PAO=0;PQA=0;PQR=0;PRO=0;QA=1300;QR=4280;RO=112;RPL=0;RPP=74.6689;RPPR=246.215;RPR=33;RUN=1;SAF=33;SAP=74.6689;SAR=0;SRF=112;SRP=246.215;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:55:39,12,4:39:1511:12,4:459,159:-25.9075,0,-120.511,-24.5532,-111.031,-147.485 0|1:46:32,13,1:32:1186:13,1:521,41:-33.2828,0,-93.0777,-39.5311,-93.6059,-136.238 0|1:33:26,5,1:26:1000:5,1:200,32:-8.77991,0,-80.751,-14.0328,-79.6798,-95.8576 0|1:18:15,3,0:15:583:3,0:120,0:-5.76936,0,-47.3908,-10.2848,-48.2939,-58.181 dDocent_Contig_11847 41 . T C 56.6763 . AB=0.230769;ABP=11.1951;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=92;DPB=92;DPRA=0.493671;EPP=9.52472;EPPR=196.271;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=121;QR=3221;RO=89;RPL=0;RPP=9.52472;RPPR=196.271;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=89;SRP=196.271;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:33:33,0:33:1192:0:0:0,-9.93399,-107.567 0/0:25:25,0:25:921:0:0:0,-7.52575,-83.2036 0/0:21:21,0:21:769:0:0:0,-6.32163,-69.532 0/1:13:10,3:10:339:3:121:-7.3666,0,-26.9201 dDocent_Contig_11849 98 . N C 228.18 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=7;CIGAR=2X;DP=7;DPB=7;DPRA=0;EPP=18.2106;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=237;QR=0;RO=0;RPL=7;RPP=18.2106;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. 1|1:1:0,1:0:0:1:34:-3.39891,-0.30103,0 1|1:3:0,3:0:0:3:101:-9.42383,-0.90309,0 1|1:3:0,3:0:0:3:102:-9.51695,-0.90309,0 dDocent_Contig_11850 27 . G A 194.824 . AB=0.333333;ABP=8.80089;AC=2;AF=0.25;AN=8;AO=8;CIGAR=1X3M1X1M1X;DP=28;DPB=28;DPRA=6;EPP=20.3821;EPPR=37.7539;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0.625;PAO=0;PQA=0;PQR=0;PRO=0;QA=309;QR=629;RO=16;RPL=0;RPP=20.3821;RPPR=37.7539;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:9:5,3,0:5:195:3,0:121,0:-8.50884,0,-15.159,-10.014,-16.0621,-26.0429 0|1:15:8,5,2:8:317:5,2:188,82:-12.9686,0,-24.5763,-8.59904,-19.3106,-34.1018 0|0:2:1,0,1:1:40:0,1:0,40:-3.39362,-3.69465,-6.98973,0,-3.69465,-3.39362 0|0:2:2,0,0:2:77:0,0:0,0:0,-0.60206,-7.30883,-0.60206,-7.30883,-7.30883 dDocent_Contig_11852 7 . T C 68.3543 . AB=0.235294;ABP=13.3567;AC=2;AF=0.25;AN=8;AO=4;CIGAR=1X;DP=33;DPB=33;DPRA=1.0625;EPP=11.6962;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=156;QR=1119;RO=29;RPL=0;RPP=11.6962;RPPR=65.983;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:6,3:6:227:3:117:-8.20111,0,-18.0827 0/1:8:7,1:7:273:1:39:-1.48832,0,-22.5298 0/0:12:12,0:12:466:0:0:0,-3.61236,-42.2922 0/0:4:4,0:4:153:0:0:0,-1.20412,-14.1416 dDocent_Contig_11855 122 . C T 113.145 . AB=0.416667;ABP=3.73412;AC=2;AF=0.25;AN=8;AO=6;CIGAR=1X;DP=58;DPB=58;DPRA=0.189189;EPP=16.0391;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=203;QR=1868;RO=52;RPL=0;RPP=16.0391;RPPR=115.927;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=115.927;SRR=52;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:5,4:5:184:4:156:-11.708,0,-14.2092 0/0:37:37,0:37:1349:0:0:0,-11.1381,-121.707 0/0:9:8,1:8:261:1:8:0,-1.90927,-23.0044 0/1:3:2,1:2:74:1:39:-2.99347,0,-6.12279 dDocent_Contig_11857 117 . C T 322.719 . AB=0.414634;ABP=5.60547;AC=3;AF=0.5;AN=6;AO=17;CIGAR=1X;DP=41;DPB=41;DPRA=0;EPP=39.9253;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=539;QR=813;RO=24;RPL=0;RPP=39.9253;RPPR=55.1256;RPR=17;RUN=1;SAF=0;SAP=39.9253;SAR=17;SRF=0;SRP=55.1256;SRR=24;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:7:6,1:6:210:1:35:-1.39142,0,-17.1353 0/1:26:14,12:14:470:12:365:-25.316,0,-34.7936 0/1:8:4,4:4:133:4:139:-10.4444,0,-9.8904 ./.:.:.:.:.:.:.:. dDocent_Contig_11859 83 . G A 126.042 . AB=0.307692;ABP=11.3621;AC=3;AF=0.375;AN=8;AO=8;CIGAR=1X1M1X;DP=27;DPB=27;DPRA=8.66667;EPP=20.3821;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=275;QR=606;RO=18;RPL=8;RPP=20.3821;RPPR=42.0968;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:9:6,3:6:207:3:98:-6.4343,0,-16.2588 0|1:14:9,4:9:301:4:142:-8.94492,0,-23.2437 0|1:3:2,1:2:63:1:35:-2.59554,0,-5.08035 0|0:1:1,0:1:35:0:0:0,-0.30103,-3.49863 dDocent_Contig_11860 15 . G A 533.382 . AB=0.343284;ABP=17.3031;AC=3;AF=0.375;AN=8;AO=23;CIGAR=1X;DP=68;DPB=68;DPRA=22.3333;EPP=52.9542;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.73913;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=865;QR=1802;RO=45;RPL=0;RPP=52.9542;RPPR=100.727;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:19,6:19:752:6:238:-14.2684,0,-60.4732 0/1:24:14,10:14:564:10:378:-27.1431,0,-43.8769 0/1:18:11,7:11:446:7:249:-17.3241,0,-35.0771 0/0:1:1,0:1:40:0:0:0,-0.30103,-3.99568 dDocent_Contig_11861 80 . C T 127.559 . AB=0.21875;ABP=24.9965;AC=2;AF=0.25;AN=8;AO=7;CIGAR=1X;DP=64;DPB=64;DPRA=1;EPP=18.2106;EPPR=126.784;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=50.3509;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.824561;PAO=0;PQA=0;PQR=0;PRO=0;QA=278;QR=2258;RO=57;RPL=7;RPP=18.2106;RPPR=126.784;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:20,5:20:781:5:198:-10.6693,0,-43.4543 0/0:19:19,0:19:773:0:0:0,-5.71957,-69.8892 0/1:7:5,2:5:201:2:80:-5.48458,0,-13.4206 0/0:13:13,0:13:503:0:0:0,-3.91339,-39.8 dDocent_Contig_11862 37 . C T 335.697 . AB=0.388889;ABP=6.8707;AC=3;AF=0.375;AN=8;AO=14;CIGAR=1X3M21I1X;DP=45;DPB=108;DPRA=1.33333;EPP=33.4109;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.933333;PAO=0;PQA=0;PQR=0;PRO=0;QA=542;QR=1197;RO=30;RPL=14;RPP=33.4109;RPPR=68.1545;RPR=0;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:19:13,6:13:515:6:231:-15.4366,0,-40.9777 0|0:9:9,0:9:361:0:0:0,-2.70927,-32.8536 0|1:11:4,6:4:161:6:232:-17.8396,0,-11.4651 0|1:6:4,2:4:160:2:79:-5.69145,0,-12.9778 dDocent_Contig_11863 32 . G A 102.723 . AB=0.212121;ABP=26.7649;AC=3;AF=0.375;AN=8;AO=7;CIGAR=1X;DP=35;DPB=35;DPRA=5.5;EPP=18.2106;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=271;QR=1143;RO=28;RPL=0;RPP=18.2106;RPPR=63.8115;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:8,3:8:328:3:119:-7.78368,0,-26.579 0/1:4:2,2:2:82:2:73:-5.72507,0,-6.57556 0/1:18:16,2:16:654:2:79:-2.07909,0,-53.7734 0/0:2:2,0:2:79:0:0:0,-0.60206,-7.49763 dDocent_Contig_11864 17 . C T 196.674 . AB=0.3;ABP=9.95901;AC=4;AF=0.5;AN=8;AO=8;CIGAR=1X;DP=33;DPB=33;DPRA=0.666667;EPP=20.3821;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=310;QR=995;RO=25;RPL=0;RPP=20.3821;RPPR=57.2971;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:5:1,4:1:41:4:154:-12.7277,0,-2.58942 1/1:2:0,2:0:0:2:80:-7.59157,-0.60206,0 0/1:15:13,2:13:532:2:76:-2.69881,0,-43.7107 0/0:11:11,0:11:422:0:0:0,-3.31133,-38.3195 dDocent_Contig_11865 110 . A T 527.09 . AB=0.333333;ABP=13.1438;AC=6;AF=0.75;AN=8;AO=22;CIGAR=1X;DP=50;DPB=50;DPRA=0;EPP=50.7827;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.964286;PAO=0;PQA=0;PQR=0;PRO=0;QA=749;QR=948;RO=28;RPL=0;RPP=50.7827;RPPR=63.8115;RPR=22;RUN=1;SAF=0;SAP=50.7827;SAR=22;SRF=0;SRP=63.8115;SRR=28;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:19,4:19:647:4:137:-5.74447,0,-51.6272 1/1:4:0,4:0:0:4:133:-12.2988,-1.20412,0 1/1:4:0,4:0:0:4:140:-12.9449,-1.20412,0 0/1:19:9,10:9:301:10:339:-25.1186,0,-21.6963 dDocent_Contig_11868 10 . G C 157.648 . AB=0.352941;ABP=9.39698;AC=3;AF=0.375;AN=8;AO=12;CIGAR=1M6I2M1X1M2X;DP=35;DPB=45.2857;DPRA=11.3333;EPP=29.068;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=28.6667;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=477;QR=871;RO=23;RPL=0;RPP=29.068;RPPR=52.9542;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:14:9,5:9:343:5:198:-9.37678,0,-27.0129 0|1:12:9,3:9:334:3:119:-4.66243,0,-26.7964 0|1:8:4,4:4:155:4:160:-7.1227,0,-11.9169 0|0:1:1,0:1:39:0:0:0,-0.30103,-3.89656 dDocent_Contig_11872 43 . C T 60.5276 . AB=0.272727;ABP=7.94546;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=24;DPB=24;DPRA=1.69231;EPP=9.52472;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=120;QR=832;RO=21;RPL=0;RPP=9.52472;RPPR=48.6112;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 0/0:4:4,0:4:149:0:0:0,-1.20412,-13.7673 0/1:11:8,3:8:318:3:120:-7.87657,0,-25.6748 0/0:9:9,0:9:365:0:0:0,-2.70927,-33.2145 dDocent_Contig_11873 29 . A C 312.098 . AB=0.173077;ABP=99.5573;AC=4;AF=0.5;AN=8;AO=18;CIGAR=1X;DP=104;DPB=104;DPRA=0;EPP=42.0968;EPPR=189.757;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=734;QR=3430;RO=86;RPL=0;RPP=42.0968;RPPR=189.757;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=86;SRP=189.757;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:37:32,5:32:1276:5:205:-7.6969,0,-103.97 0/1:21:12,9:12:484:9:365:-26.8934,0,-37.5894 0/1:36:33,3:33:1314:3:123:-0.627708,0,-107.688 0/1:10:9,1:9:356:1:41:-1.08427,0,-29.3919 dDocent_Contig_11874 201 . C T 73.2775 . AB=0;ABP=0;AC=2;AF=0.25;AN=8;AO=2;CIGAR=1X;DP=19;DPB=19;DPRA=0.352941;EPP=7.35324;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.38813e-21;PAIRED=1;PAIREDR=0.882353;PAO=0;PQA=0;PQR=0;PRO=0;QA=74;QR=625;RO=17;RPL=2;RPP=7.35324;RPPR=39.9253;RPR=0;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=39.9253;SRR=17;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:1:1,0:1:37:0:0:0,-0.30103,-3.69783 0/0:8:8,0:8:292:0:0:0,-2.40824,-26.6306 0/0:8:8,0:8:296:0:0:0,-2.40824,-26.9942 1/1:2:0,2:0:0:2:74:-7.02588,-0.60206,0 dDocent_Contig_11875 28 . C T 236.711 . AB=0.241379;ABP=19.8579;AC=1;AF=0.125;AN=8;AO=7;CIGAR=17M1X2M;DP=85;DPB=85.35;DPRA=0.805556;EPP=18.2106;EPPR=152.842;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=284;QR=2723;RO=69;RPL=0;RPP=18.2106;RPPR=152.842;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=69;SRP=152.842;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:29:22,0,0,7:22:860:0,0,7:0,0,284:-17.2041,-23.8268,-94.5197,-23.8268,-94.5197,-94.5197,0,-71.0946,-71.0946,-68.9874 0|0:36:34,0,0,0:34:1350:0,0,0:0,0,0:0,-10.235,-121.509,-10.235,-121.509,-121.509,-10.235,-121.509,-121.509,-121.509 0|0:11:6,3,2,0:6:233:3,2,0:119,69,0:-8.02072,0,-18.2735,-4.24248,-13.5823,-22.7791,-9.8269,-19.1765,-23.3811,-28.9778 0|0:9:7,0,2,0:7:280:0,2,0:0,69,0:-3.84262,-5.94983,-29.058,0,-23.4651,-22.8631,-5.94983,-29.058,-23.4651,-29.058 dDocent_Contig_11876 25 . A G 709.302 . AB=0.545455;ABP=3.79993;AC=3;AF=0.375;AN=8;AO=24;CIGAR=1X;DP=62;DPB=62;DPRA=0.814815;EPP=55.1256;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=966;QR=1500;RO=38;RPL=0;RPP=55.1256;RPPR=85.5263;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:18:18,0:18:708:0:0:0,-5.41854,-64.0469 0/1:5:2,3:2:81:3:122:-9.86734,0,-6.18058 0/1:27:7,20:7:271:20:803:-64.4575,0,-16.6269 0/1:12:11,1:11:440:1:41:-0.482207,0,-36.3427 dDocent_Contig_11877 37 . G C 523.571 . AB=0.475;ABP=3.22745;AC=3;AF=0.375;AN=8;AO=19;CIGAR=1X;DP=47;DPB=47;DPRA=1.90476;EPP=44.2683;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=0.789474;PAIREDR=0.964286;PAO=0;PQA=0;PQR=0;PRO=0;QA=761;QR=1073;RO=28;RPL=0;RPP=44.2683;RPPR=63.8115;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:7:1,6:1:40:6:233:-19.2279,0,-1.88847 0/1:16:9,7:9:342:7:283:-21.0269,0,-26.3114 0/1:17:11,6:11:431:6:245:-17.312,0,-34.0192 0/0:7:7,0:7:260:0:0:0,-2.10721,-23.7457 dDocent_Contig_11878 77 . G T 78.9311 . AB=0.166667;ABP=43.5445;AC=3;AF=0.375;AN=8;AO=7;CIGAR=1X;DP=46;DPB=46;DPRA=3.5;EPP=18.2106;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.857143;PAIREDR=0.897436;PAO=0;PQA=0;PQR=0;PRO=0;QA=269;QR=1489;RO=39;RPL=7;RPP=18.2106;RPPR=87.6977;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:17,2:17:653:2:73:-1.21113,0,-53.3868 0/1:6:5,1:5:193:1:38:-1.99109,0,-15.9352 0/1:17:13,4:13:494:4:158:-9.48293,0,-39.6872 0/0:4:4,0:4:149:0:0:0,-1.20412,-13.7728 dDocent_Contig_11880 125 . T C 190.604 . AB=0.375;ABP=6.26751;AC=2;AF=0.25;AN=8;AO=9;CIGAR=1X;DP=42;DPB=42;DPRA=1.33333;EPP=22.5536;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.969697;PAO=0;PQA=0;PQR=0;PRO=0;QA=322;QR=1136;RO=33;RPL=0;RPP=22.5536;RPPR=74.6689;RPR=9;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=74.6689;SRR=33;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:10,3:10:347:3:108:-6.16178,0,-27.6518 0/1:11:5,6:5:175:6:214:-16.2965,0,-12.7824 0/0:11:11,0:11:376:0:0:0,-3.31133,-34.1698 0/0:7:7,0:7:238:0:0:0,-2.10721,-21.7524 dDocent_Contig_11881 8 . G A 143.446 . AB=0.318182;ABP=9.32731;AC=2;AF=0.25;AN=8;AO=7;CIGAR=1X;DP=75;DPB=75;DPRA=0.415094;EPP=18.2106;EPPR=150.67;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.985294;PAO=0;PQA=0;PQR=0;PRO=0;QA=262;QR=2620;RO=68;RPL=0;RPP=18.2106;RPPR=150.67;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=68;SRP=150.67;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:25:25,0:25:954:0:0:0,-7.52575,-86.1742 0/0:28:28,0:28:1087:0:0:0,-8.42884,-98.1343 0/1:17:11,6:11:427:6:223:-15.3092,0,-33.6676 0/1:5:4,1:4:152:1:39:-2.39141,0,-12.544 dDocent_Contig_11882 93 . T A 443.217 . AB=0.555556;ABP=3.73412;AC=4;AF=0.5;AN=8;AO=17;CIGAR=1X;DP=90;DPB=90;DPRA=0.15847;EPP=39.9253;EPPR=161.528;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=609;QR=2584;RO=73;RPL=17;RPP=39.9253;RPPR=161.528;RPR=0;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=73;SRP=161.528;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:61:61,0:61:2158:0:0:0,-18.3628,-194.488 0/1:20:10,10:10:357:10:362:-26.9048,0,-26.4516 1/1:2:0,2:0:0:2:69:-6.55266,-0.60206,0 0/1:7:2,5:2:69:5:178:-14.2615,0,-4.44545 dDocent_Contig_11883 11 . T G 126.428 . AB=0.357143;ABP=5.49198;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=25;DPB=25;DPRA=2.54545;EPP=13.8677;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=200;QR=751;RO=20;RPL=0;RPP=13.8677;RPPR=46.4397;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:9,5:9:351:5:200:-14.1649,0,-27.7279 0/0:10:10,0:10:364:0:0:0,-3.0103,-33.0897 0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827 ./.:.:.:.:.:.:.:. dDocent_Contig_11884 64 . G A 504.637 . AB=0.666667;ABP=4.45795;AC=3;AF=0.375;AN=8;AO=17;CIGAR=1X;DP=31;DPB=31;DPRA=1.58333;EPP=39.9253;EPPR=33.4109;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=589;QR=516;RO=14;RPL=17;RPP=39.9253;RPPR=33.4109;RPR=0;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=14;SRP=33.4109;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5,0:5:185:0:0:0,-1.50515,-17.01 0/0:7:7,0:7:257:0:0:0,-2.10721,-23.484 1/1:13:0,13:0:0:13:456:-41.3713,-3.91339,0 0/1:6:2,4:2:74:4:133:-10.4902,0,-5.2197 dDocent_Contig_11885 107 . N T 1599.86 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=57;CIGAR=1X;DP=58;DPB=58;DPRA=0;EPP=126.784;EPPR=0;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1758;QR=0;RO=0;RPL=0;RPP=126.784;RPPR=0;RPR=57;RUN=1;SAF=0;SAP=126.784;SAR=57;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:10:0,10:0:0:10:316:-28.7482,-3.0103,0 1/1:43:0,42:0:0:42:1281:-115.502,-12.6433,0 1/1:3:0,3:0:0:3:94:-8.77091,-0.90309,0 1/1:2:0,2:0:0:2:67:-6.36304,-0.60206,0 dDocent_Contig_11886 11 . T C 147.632 . AB=0.428571;ABP=3.63072;AC=2;AF=0.25;AN=8;AO=6;CIGAR=1X1M1X;DP=34;DPB=34;DPRA=0.7;EPP=16.0391;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=0.964286;PAO=0;PQA=0;PQR=0;PRO=0;QA=240;QR=1112;RO=28;RPL=0;RPP=16.0391;RPPR=63.8115;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:7:7,0:7:280:0:0:0,-2.10721,-25.5713 0|0:13:13,0:13:509:0:0:0,-3.91339,-46.1548 0|1:7:4,3:4:160:3:119:-8.98818,0,-12.6766 0|1:7:4,3:4:163:3:121:-9.17299,0,-12.9512 dDocent_Contig_11887 44 . C T 89.0699 . AB=0.208333;ABP=20.744;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=62;DPB=62;DPRA=1.89474;EPP=13.8677;EPPR=126.784;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.8421;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=194;QR=2233;RO=57;RPL=0;RPP=13.8677;RPPR=126.784;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:16:16,0:16:633:0:0:0,-4.81648,-57.3053 0/0:11:11,0:11:418:0:0:0,-3.31133,-37.9568 0/1:24:19,5:19:750:5:194:-10.606,0,-60.5988 0/0:11:11,0:11:432:0:0:0,-3.31133,-39.2323 dDocent_Contig_11888 106 . N T 97.4064 . AB=0.5;ABP=3.0103;AC=6;AF=1;AN=6;AO=2;CIGAR=2X;DP=5;DPB=5;DPRA=0.75;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1.5;MQM=59;MQMR=0;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=76;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:2:0,1,1:0:0:1,1:35,38:-3.95266,-3.49465,-3.19362,-0.697736,0,-0.396706 1|1:2:0,2,0:0:0:2,0:72,0:-1.89814,-0.60206,0,-1.89814,-0.60206,-1.89814 1|1:1:0,0,1:0:0:0,1:0,38:-3.79727,-3.79727,-3.79727,-0.30103,-0.30103,0 .:.:.:.:.:.:.:. dDocent_Contig_11890 9 . T C 52.9802 . AB=0.230769;ABP=11.1951;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=53;DPB=53;DPRA=0.975;EPP=9.52472;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.76;PAO=0;PQA=0;PQR=0;PRO=0;QA=117;QR=1908;RO=50;RPL=0;RPP=9.52472;RPPR=111.584;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:15:15,0:15:572:0:0:0,-4.51545,-51.8217 0/0:9:9,0:9:340:0:0:0,-2.70927,-30.9544 0/0:16:16,0:16:612:0:0:0,-4.81648,-55.4196 0/1:13:10,3:10:384:3:117:-6.99699,0,-31.0024 dDocent_Contig_11891 12 . G A 3337.18 . AB=0.462451;ABP=6.10873;AC=4;AF=0.5;AN=8;AO=117;CIGAR=1X;DP=253;DPB=253;DPRA=0;EPP=257.073;EPPR=298.331;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.948718;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4624;QR=5393;RO=136;RPL=0;RPP=257.073;RPPR=298.331;RPR=117;RUN=1;SAF=117;SAP=257.073;SAR=0;SRF=136;SRP=298.331;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:93:53,40:53:2099:40:1592:-115.518,0,-161.086 0/1:87:55,32:55:2191:32:1266:-88.0204,0,-171.174 0/1:42:12,30:12:486:30:1171:-93.0223,0,-31.4473 0/1:31:16,15:16:617:15:595:-44.5547,0,-46.5253 dDocent_Contig_11893 156 . G T 209.507 . AB=0.21875;ABP=24.9965;AC=5;AF=0.625;AN=8;AO=10;CIGAR=1X;DP=35;DPB=35;DPRA=0;EPP=6.48466;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.7;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=383;QR=965;RO=25;RPL=0;RPP=24.725;RPPR=57.2971;RPR=10;RUN=1;SAF=3;SAP=6.48466;SAR=7;SRF=0;SRP=57.2971;SRR=25;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:9,2:9:332:2:81:-4.3744,0,-26.9077 0/1:15:12,3:12:484:3:107:-5.46625,0,-39.396 1/1:3:0,3:0:0:3:116:-10.8163,-0.90309,0 0/1:6:4,2:4:149:2:79:-5.69106,0,-11.9655 dDocent_Contig_11894 7 . T C 187.173 . AB=0.173913;ABP=66.7383;AC=4;AF=0.5;AN=8;AO=12;CIGAR=1X;DP=69;DPB=69;DPRA=0;EPP=29.068;EPPR=126.784;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=468;QR=2195;RO=57;RPL=0;RPP=29.068;RPPR=126.784;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:14,7:14:543:7:273:-18.6164,0,-42.8944 0/1:12:11,1:11:427:1:39:-0.284205,0,-35.1727 0/1:23:21,2:21:801:2:78:-0.479783,0,-65.4916 0/1:13:11,2:11:424:2:78:-3.49008,0,-34.6006 dDocent_Contig_11895 12 . C A 120.347 . AB=0.111111;ABP=144.88;AC=3;AF=0.375;AN=8;AO=12;CIGAR=2X1M;DP=110;DPB=110;DPRA=18;EPP=29.068;EPPR=202.786;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=471;QR=3662;RO=92;RPL=0;RPP=29.068;RPPR=202.786;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=92;SRP=202.786;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:49:42,4,3:42:1661:4,3:163,113:-0.821538,0,-135.497,-4.2181,-127.443,-139.988 0|1:52:43,2,7:43:1723:2,7:80,278:-9.94031,-16.294,-157.645,0,-135.361,-139.844 0|1:7:5,0,2:5:202:0,2:0,80:-5.48458,-6.98973,-23.646,0,-17.0569,-16.4549 0|0:2:2,0,0:2:76:0,0:0,0:0,-0.60206,-7.21426,-0.60206,-7.21426,-7.21426 dDocent_Contig_11896 49 . A T 169.654 . AB=0.5;ABP=3.0103;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=32;DPB=32;DPRA=1.8;EPP=16.0391;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=0.846154;PAO=0;PQA=0;PQR=0;PRO=0;QA=240;QR=1036;RO=26;RPL=0;RPP=16.0391;RPPR=59.4686;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:6,6:6:244:6:240:-18.3631,0,-18.7265 0/0:11:11,0:11:427:0:0:0,-3.31133,-38.7814 0/0:7:7,0:7:285:0:0:0,-2.10721,-26.0244 0/0:2:2,0:2:80:0:0:0,-0.60206,-7.59157 dDocent_Contig_11897 7 . T C 1112.14 . AB=0.609375;ABP=9.66043;AC=4;AF=0.5;AN=8;AO=39;CIGAR=1X;DP=64;DPB=64;DPRA=0;EPP=87.6977;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1516;QR=963;RO=25;RPL=0;RPP=87.6977;RPPR=57.2971;RPR=39;RUN=1;SAF=39;SAP=87.6977;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:3,11:3:115:11:428:-34.661,0,-6.51047 0/1:24:9,15:9:347:15:581:-45.4083,0,-24.3651 0/1:20:9,11:9:345:11:429:-32.945,0,-25.3879 0/1:6:4,2:4:156:2:78:-5.59729,0,-12.6111 dDocent_Contig_11898 194 . A C 1015.09 . AB=0.333333;ABP=14.5915;AC=6;AF=0.75;AN=8;AO=16;CIGAR=1X3M;DP=63;DPB=63;DPRA=0;EPP=37.7539;EPPR=48.6112;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=602;QR=826;RO=21;RPL=16;RPP=37.7539;RPPR=48.6112;RPR=0;RUN=1;SAF=0;SAP=37.7539;SAR=16;SRF=0;SRP=48.6112;SRR=21;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:15:12,3,0:12:475:3,0:118,0:-6.48744,0,-38.5871,-10.0998,-39.4902,-49.1966 0|1:33:9,19,5:9:351:19,5:732,193:-57.3948,0,-23.1353,-44.2571,-13.0095,-71.6058 1|1:9:0,2,7:0:0:2,7:79,261:-28.2337,-21.7279,-21.1258,-6.89557,0,-4.78836 1|1:6:0,2,4:0:0:2,4:55,148:-16.7865,-12.4707,-11.8686,-4.62232,0,-3.4182 dDocent_Contig_11899 36 . T A 58.7098 . AB=0.138889;ABP=43.7857;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=58;DPB=58;DPRA=4.90909;EPP=13.8677;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=197;QR=2008;RO=53;RPL=0;RPP=13.8677;RPPR=118.098;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:31,5:31:1175:5:197:-7.26881,0,-95.2015 0/0:13:13,0:13:481:0:0:0,-3.91339,-43.6226 0/0:5:5,0:5:195:0:0:0,-1.50515,-17.9239 0/0:4:4,0:4:157:0:0:0,-1.20412,-14.5083 dDocent_Contig_11900 90 . G A 580.997 . AB=0.440678;ABP=4.81373;AC=3;AF=0.375;AN=8;AO=26;CIGAR=1X;DP=63;DPB=63;DPRA=4.91667;EPP=59.4686;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=892;QR=1227;RO=37;RPL=26;RPP=59.4686;RPPR=83.3548;RPR=0;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:33:16,17:16:534:17:595:-43.9431,0,-38.4434 0/1:11:6,5:6:201:5:162:-11.5869,0,-15.108 0/1:15:11,4:11:368:4:135:-7.96753,0,-28.9286 0/0:4:4,0:4:124:0:0:0,-1.20412,-11.467 dDocent_Contig_11903 42 . G A 377.387 . AB=0.448276;ABP=3.68421;AC=1;AF=0.125;AN=8;AO=13;CIGAR=1X;DP=85;DPB=85;DPRA=1.55357;EPP=31.2394;EPPR=159.356;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=528;QR=2866;RO=72;RPL=0;RPP=31.2394;RPPR=159.356;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=72;SRP=159.356;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:16,13:16:635:13:528:-39.1366,0,-48.7506 0/0:38:38,0:38:1512:0:0:0,-11.4391,-136.325 0/0:10:10,0:10:396:0:0:0,-3.0103,-35.997 0/0:8:8,0:8:323:0:0:0,-2.40824,-29.4386 dDocent_Contig_11904 8 . G T 72.6292 . AB=0.4;ABP=3.87889;AC=1;AF=0.25;AN=4;AO=4;CIGAR=1X;DP=26;DPB=26;DPRA=0.625;EPP=5.18177;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=39.5;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=153;QR=841;RO=22;RPL=0;RPP=11.6962;RPPR=50.7827;RPR=4;RUN=1;SAF=3;SAP=5.18177;SAR=1;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:6,4:6:227:4:153:-8.96189,0,-17.7817 0/0:16:16,0:16:614:0:0:0,-4.81648,-55.5994 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_11905 121 . G A 1804.62 . AB=0.194175;ABP=86.6858;AC=1;AF=0.125;AN=8;AO=20;CIGAR=1X3M1X;DP=103;DPB=103;DPRA=0;EPP=46.4397;EPPR=44.2683;GTI=0;LEN=1;MEANALT=2.25;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=698;QR=679;RO=19;RPL=0;RPP=46.4397;RPPR=44.2683;RPR=20;RUN=1;SAF=0;SAP=46.4397;SAR=20;SRF=0;SRP=44.2683;SRR=19;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:29:7,6,16:7:251:6,16:202,551:-42.6538,-28.3955,-47.0658,0,-4.12647,-15.6675 0|0:25:8,7,10:8:286:7,10:250,352:-26.2454,-8.26896,-29.4842,0,-2.93777,-20.3099 1|0:24:1,6,17:1:35:6,17:211,604:-63.2494,-46.3756,-47.4169,-14.3297,0,-12.0597 0|0:25:3,1,20:3:107:1,20:35,696:-55.6907,-53.746,-62.1686,0,-5.87982,-2.70596 dDocent_Contig_11906 19 . T C 83.7739 . AB=0.103448;ABP=42.621;AC=1;AF=0.125;AN=8;AO=3;CIGAR=2X;DP=66;DPB=66;DPRA=11.6;EPP=9.52472;EPPR=128.956;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.982759;PAO=0;PQA=0;PQR=0;PRO=0;QA=123;QR=2330;RO=58;RPL=0;RPP=9.52472;RPPR=128.956;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:29:26,3,0:26:1056:3,0:123,0:-2.73492,0,-86.5985,-10.5617,-87.5015,-97.6542 0|0:32:27,0,5:27:1076:0,5:0,203:-9.0201,-17.1479,-105.741,0,-88.9974,-87.4923 0|0:2:2,0,0:2:81:0,0:0,0:0,-0.60206,-7.68573,-0.60206,-7.68573,-7.68573 0|0:3:3,0,0:3:117:0,0:0,0:0,-0.90309,-10.9102,-0.90309,-10.9102,-10.9102 dDocent_Contig_11907 17 . C A 1029.5 . AB=0.5625;ABP=5.18177;AC=4;AF=0.5;AN=8;AO=36;CIGAR=1X;DP=64;DPB=64;DPRA=0;EPP=81.1833;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.472222;PAIREDR=0.821429;PAO=0;PQA=0;PQR=0;PRO=0;QA=1424;QR=1127;RO=28;RPL=0;RPP=81.1833;RPPR=63.8115;RPR=36;RUN=1;SAF=36;SAP=81.1833;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:16,11:16:638:11:437:-31.5568,0,-49.6241 0/1:14:2,12:2:82:12:467:-38.1616,0,-3.56526 0/1:19:8,11:8:325:11:439:-34.1454,0,-23.8999 0/1:4:2,2:2:82:2:81:-6.48161,0,-6.57556 dDocent_Contig_11908 24 . T G 60.7095 . AB=0.122449;ABP=63.6786;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=92;DPB=92;DPRA=3.4186;EPP=16.0391;EPPR=189.757;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.8023;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.976744;PAO=0;PQA=0;PQR=0;PRO=0;QA=246;QR=3462;RO=86;RPL=0;RPP=16.0391;RPPR=189.757;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=86;SRP=189.757;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:32:32,0:32:1290:0:0:0,-9.63296,-116.358 0/1:49:43,6:43:1729:6:246:-7.76965,0,-141.039 0/0:9:9,0:9:364:0:0:0,-2.70927,-33.125 0/0:2:2,0:2:79:0:0:0,-0.60206,-7.49724 dDocent_Contig_11910 42 . G A 60.318 . AB=0;ABP=0;AC=2;AF=0.25;AN=8;AO=2;CIGAR=1M1D1M1X;DP=34;DPB=33.5;DPRA=0.290323;EPP=7.35324;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=40;MQMR=35.9062;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=73;QR=1277;RO=32;RPL=0;RPP=7.35324;RPPR=72.4974;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:14:14,0:14:560:0:0:0,-4.21442,-46.9616 0|0:5:5,0:5:197:0:0:0,-1.50515,-8.9166 0|0:12:12,0:12:482:0:0:0,-3.61236,-40.3838 1|1:3:1,2:1:38:2:73:-5.72966,-0.00356764,0 dDocent_Contig_11911 29 . C T 1308.36 . AB=0.322581;ABP=36.9133;AC=5;AF=0.625;AN=8;AO=48;CIGAR=1X;DP=132;DPB=132;DPRA=0;EPP=107.241;EPPR=185.414;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=0.729167;PAIREDR=0.964286;PAO=0;PQA=0;PQR=0;PRO=0;QA=1913;QR=3406;RO=84;RPL=0;RPP=107.241;RPPR=185.414;RPR=48;RUN=1;SAF=48;SAP=107.241;SAR=0;SRF=84;SRP=185.414;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:8:0,8:0:0:8:317:-28.8929,-2.40824,0 0/1:77:67,10:67:2716:10:387:-11.9999,0,-221.364 0/1:8:2,6:2:82:6:246:-20.1119,0,-5.37144 0/1:39:15,24:15:608:24:963:-75.2289,0,-43.3178 dDocent_Contig_11913 30 . C T 160.665 . AB=0.0769231;ABP=43.4331;AC=0;AF=0;AN=8;AO=2;CIGAR=1X2M1X;DP=76;DPB=76;DPRA=1.85714;EPP=7.35324;EPPR=144.156;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.984615;PAO=0;PQA=0;PQR=0;PRO=0;QA=79;QR=2592;RO=65;RPL=0;RPP=7.35324;RPPR=144.156;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=65;SRP=144.156;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:22:22,0,0:22:875:0,0:0,0:0,-6.62266,-79.0633,-6.62266,-79.0633,-79.0633 0|0:26:18,2,6:18:712:2,6:79,245:-14.8068,-13.7277,-71.7073,0,-52.0907,-56.7854 0|0:22:19,0,3:19:767:0,3:0,121:-4.65733,-10.3769,-73.606,0,-63.632,-62.7289 0|0:6:6,0,0:6:238:0,0:0,0:0,-1.80618,-21.7925,-1.80618,-21.7925,-21.7925 dDocent_Contig_11914 106 . N A 103.54 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=3;CIGAR=2X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=104;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. 1|1:2:0,2:0:0:2:69:-6.55266,-0.60206,0 1|1:1:0,1:0:0:1:35:-3.49863,-0.30103,0 dDocent_Contig_11916 66 . G A 58.4181 . AB=0.25;ABP=11.6962;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=25;DPB=25;DPRA=3.55556;EPP=11.6962;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=135;QR=650;RO=21;RPL=4;RPP=11.6962;RPPR=48.6112;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:8:8,0:8:230:0:0:0,-2.40824,-20.982 0/1:16:12,4:12:383:4:135:-7.66496,0,-29.9619 0/0:1:1,0:1:37:0:0:0,-0.30103,-3.69783 ./.:.:.:.:.:.:.:. dDocent_Contig_11917 31 . G A 113.49 . AB=0.170732;ABP=41.6201;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=102;DPB=102;DPRA=1.21739;EPP=20.3821;EPPR=207.129;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.875;PAIREDR=0.882979;PAO=0;PQA=0;PQR=0;PRO=0;QA=319;QR=3742;RO=94;RPL=0;RPP=20.3821;RPPR=207.129;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=94;SRP=207.129;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:28:28,0:28:1115:0:0:0,-8.42884,-100.635 0/1:41:34,7:34:1353:7:278:-13.0476,0,-109.689 0/0:15:14,1:14:563:1:41:0,-0.420883,-46.9187 0/0:18:18,0:18:711:0:0:0,-5.41854,-64.3162 dDocent_Contig_11919 9 . G A 400.291 . AB=0.0842105;ABP=288.319;AC=1;AF=0.125;AN=8;AO=16;CIGAR=1M1X8M;DP=211;DPB=211;DPRA=0;EPP=37.7539;EPPR=326.56;GTI=0;LEN=1;MEANALT=4.33333;MQM=60;MQMR=60;NS=4;NUMALT=5;ODDS=0;PAIRED=0.9375;PAIREDR=0.979866;PAO=0;PQA=0;PQR=0;PRO=0;QA=581;QR=5712;RO=149;RPL=0;RPP=37.7539;RPPR=326.56;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=149;SRP=326.56;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:75:53,2,5,4,1,9:53:2022:2,5,4,1,9:80,190,151,39,338:-11.7318,-21.4634,-186.74,-12.1039,-171.76,-176.478,-15.311,-174.966,-165.607,-179.985,-24.48,-184.136,-174.777,-177.983,-190.058,0,-159.654,-150.295,-153.502,-162.671,-163.168 0|0:76:51,5,2,3,9,6:51:1961:5,2,3,9,6:200,78,106,345,228:-12.9646,-12.2064,-171.695,-21.9046,-166.788,-182.295,-19.6885,-164.569,-174.266,-179.775,0,-144.884,-154.581,-152.362,-158.284,-9.61922,-154.502,-164.199,-161.98,-142.295,-168.805 0|1:39:29,0,0,9,0,0:29:1123:0,0,9,0,0:0,0,324,0,0:-17.9263,-26.6562,-118.948,-26.6562,-118.948,-118.948,0,-92.5208,-92.5208,-89.8115,-26.6562,-118.948,-118.948,-92.5208,-118.948,-26.6562,-118.948,-118.948,-92.5208,-118.948,-118.948 0|0:21:16,1,0,0,0,3:16:606:1,0,0,0,3:40,0,0,0,117:-4.80414,-6.32257,-55.6982,-9.62062,-55.9992,-59.2952,-9.62062,-55.9992,-59.2952,-59.2952,-9.62062,-55.9992,-59.2952,-59.2952,-59.2952,0,-46.3798,-49.6761,-49.6761,-49.6761,-48.773 dDocent_Contig_11920 107 . N C 110.049 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=7.37776;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=119;QR=0;RO=0;RPL=0;RPP=11.6962;RPPR=0;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:4:0,4:0:0:4:119:-11.0046,-1.20412,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_11921 44 . C T 192.684 . AB=0.243243;ABP=24.1968;AC=2;AF=0.25;AN=8;AO=10;CIGAR=1X;DP=101;DPB=101;DPRA=0.529915;EPP=24.725;EPPR=200.614;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.824176;PAO=0;PQA=0;PQR=0;PRO=0;QA=405;QR=3626;RO=91;RPL=0;RPP=24.725;RPPR=200.614;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=91;SRP=200.614;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:25:24,1:24:943:1:38:0,-3.72848,-81.3704 0/0:39:39,0:39:1566:0:0:0,-11.7402,-141.174 0/1:26:19,7:19:750:7:285:-18.1976,0,-59.9936 0/1:11:9,2:9:367:2:82:-4.46835,0,-30.0839 dDocent_Contig_11922 15 . C T 118.683 . AB=0.120301;ABP=169.561;AC=3;AF=0.375;AN=8;AO=16;CIGAR=1X;DP=154;DPB=154;DPRA=2.11111;EPP=37.7539;EPPR=302.673;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=615;QR=5473;RO=138;RPL=0;RPP=37.7539;RPPR=302.673;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=138;SRP=302.673;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:45:41,4:41:1659:4:159:-1.1454,0,-135.985 0/1:38:33,5:33:1318:5:175:-4.64086,0,-107.443 0/1:50:43,7:43:1662:7:281:-10.6102,0,-134.764 0/0:21:21,0:21:834:0:0:0,-6.32163,-75.3696 dDocent_Contig_11923 12 . A C 1621.75 . AB=0.784615;ABP=48.7448;AC=5;AF=0.625;AN=8;AO=52;CIGAR=1X;DP=66;DPB=66;DPRA=0;EPP=115.927;EPPR=33.4109;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=0.615385;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2053;QR=549;RO=14;RPL=0;RPP=115.927;RPPR=33.4109;RPR=52;RUN=1;SAF=52;SAP=115.927;SAR=0;SRF=14;SRP=33.4109;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:3,28:3:111:28:1104:-90.3196,0,-1.01949 0/1:20:6,14:6:240:14:548:-43.6432,0,-15.9548 0/1:14:5,9:5:198:9:363:-28.8204,0,-13.9826 1/1:1:0,1:0:0:1:38:-3.79727,-0.30103,0 dDocent_Contig_11924 48 . T G 255.877 . AB=0.434783;ABP=3.86001;AC=3;AF=0.375;AN=8;AO=10;CIGAR=1X;DP=31;DPB=31;DPRA=0.958333;EPP=6.48466;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.2;PAIREDR=0.714286;PAO=0;PQA=0;PQR=0;PRO=0;QA=398;QR=843;RO=21;RPL=7;RPP=6.48466;RPPR=48.6112;RPR=3;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:8:8,0:8:316:0:0:0,-2.40824,-28.8052 0/1:10:9,1:9:364:1:41:-1.08427,0,-30.1139 0/1:6:2,4:2:81:4:157:-12.7002,0,-5.87955 0/1:7:2,5:2:82:5:200:-16.2723,0,-5.67247 dDocent_Contig_11925 158 . A G 104.415 . AB=0.4;ABP=3.87889;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=22;DPB=22;DPRA=2.5;EPP=11.6962;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=164;QR=679;RO=18;RPL=0;RPP=11.6962;RPPR=42.0968;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=0;SRP=42.0968;SRR=18;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:1:1,0:1:38:0:0:0,-0.30103,-3.79727 0/0:9:9,0:9:338:0:0:0,-2.70927,-30.7744 0/1:10:6,4:6:229:4:164:-12.1396,0,-17.9651 0/0:2:2,0:2:74:0:0:0,-0.60206,-7.02588 dDocent_Contig_11926 8 . G T 471.313 . AB=0.5;ABP=3.0103;AC=4;AF=0.5;AN=8;AO=19;CIGAR=1X;DP=78;DPB=78;DPRA=0;EPP=44.2683;EPPR=131.127;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=718;QR=2265;RO=59;RPL=0;RPP=44.2683;RPPR=131.127;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=59;SRP=131.127;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:13,8:13:505:8:310:-21.9419,0,-39.4774 0/0:47:45,2:45:1721:2:78:0,-6.74494,-147.746 0/1:7:1,6:1:39:6:214:-17.4966,0,-1.78935 1/1:3:0,3:0:0:3:116:-10.8177,-0.90309,0 dDocent_Contig_11927 9 . G A 94.0558 . AB=0.277778;ABP=10.7311;AC=2;AF=0.25;AN=8;AO=6;CIGAR=1X;DP=51;DPB=51;DPRA=0.974359;EPP=16.0391;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=231;QR=1725;RO=45;RPL=0;RPP=16.0391;RPPR=100.727;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:9,2:9:348:2:78:-4.09214,0,-28.369 0/0:13:13,0:13:502:0:0:0,-3.91339,-45.5287 0/0:20:19,1:19:721:1:37:0,-2.32277,-61.5223 0/1:7:4,3:4:154:3:116:-8.71049,0,-12.1262 dDocent_Contig_11929 122 . T G 124.158 . AB=0.285714;ABP=14.1779;AC=2;AF=0.25;AN=8;AO=8;CIGAR=1X;DP=55;DPB=55;DPRA=1.03704;EPP=20.3821;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=255;QR=1498;RO=47;RPL=0;RPP=20.3821;RPPR=105.07;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=105.07;SRR=47;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:14,7:14:438:7:220:-13.7872,0,-33.4023 0/0:26:26,0:26:833:0:0:0,-7.82678,-75.2718 0/1:7:6,1:6:194:1:35:-1.39142,0,-15.6716 0/0:1:1,0:1:33:0:0:0,-0.30103,-3.29913 dDocent_Contig_11930 82 . T A 42.7683 . AB=0.214286;ABP=12.937;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=46;DPB=46;DPRA=1.3125;EPP=9.52472;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=106;QR=1543;RO=43;RPL=3;RPP=9.52472;RPPR=96.3836;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:11,3:11:394:3:106:-5.67468,0,-31.5871 0/0:22:22,0:22:791:0:0:0,-6.62266,-71.5154 0/0:5:5,0:5:178:0:0:0,-1.50515,-16.3686 0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521 dDocent_Contig_11931 30 . T A 497.405 . AB=0.287671;ABP=31.5964;AC=3;AF=0.375;AN=8;AO=21;CIGAR=1X1M1X;DP=88;DPB=88;DPRA=1.62222;EPP=48.6112;EPPR=148.499;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=843;QR=2653;RO=67;RPL=0;RPP=48.6112;RPPR=148.499;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=67;SRP=148.499;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:33:27,6:27:1066:6:241:-12.1325,0,-86.302 0|1:21:8,13:8:318:13:521:-40.9157,0,-22.6651 0|0:15:15,0:15:596:0:0:0,-4.51545,-53.9782 0|1:19:17,2:17:673:2:81:-1.96616,0,-55.1815 dDocent_Contig_11932 110 . C A 74.7117 . AB=0.217391;ABP=18.9659;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=50;DPB=50;DPRA=2.55556;EPP=13.8677;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=175;QR=1542;RO=45;RPL=0;RPP=13.8677;RPPR=100.727;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=100.727;SRR=45;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:11,0:11:365:0:0:0,-3.31133,-33.171 0/1:23:18,5:18:623:5:175:-9.17,0,-49.4713 0/0:3:3,0:3:104:0:0:0,-0.90309,-9.70309 0/0:13:13,0:13:450:0:0:0,-3.91339,-40.8313 dDocent_Contig_11933 98 . N A 100.792 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=5;CIGAR=1X;DP=5;DPB=5;DPRA=0;EPP=3.44459;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=25;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=0.2;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=180;QR=0;RO=0;RPL=5;RPP=13.8677;RPPR=0;RPR=0;RUN=1;SAF=3;SAP=3.44459;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:72:-4.55714,-0.60206,0 1/1:1:0,1:0:0:1:39:-2.76686,-0.30103,0 ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:69:-2.27564,-0.60206,0 dDocent_Contig_11935 66 . G C 59.2261 . AB=0.3;ABP=6.48466;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=65;DPB=65;DPRA=0.545455;EPP=9.52472;EPPR=137.642;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=114;QR=2161;RO=62;RPL=3;RPP=9.52472;RPPR=137.642;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:36:36,0:36:1281:0:0:0,-10.8371,-115.58 0/1:10:7,3:7:236:3:114:-7.62151,0,-18.5556 0/0:15:15,0:15:515:0:0:0,-4.51545,-46.6645 0/0:4:4,0:4:129:0:0:0,-1.20412,-11.9279 dDocent_Contig_11936 21 . C G 48.2263 . AB=0.25;ABP=9.52472;AC=2;AF=0.25;AN=8;AO=3;CIGAR=1X;DP=27;DPB=27;DPRA=0.8;EPP=9.52472;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=963;RO=24;RPL=0;RPP=9.52472;RPPR=55.1256;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:10:10,0:10:402:0:0:0,-3.0103,-36.54 0/1:6:4,2:4:156:2:81:-5.87955,0,-12.6088 0/1:6:5,1:5:204:1:41:-2.28839,0,-16.9379 0/0:5:5,0:5:201:0:0:0,-1.50515,-18.4709 dDocent_Contig_11937 18 . T C 45.0735 . AB=0.214286;ABP=12.937;AC=2;AF=0.25;AN=8;AO=3;CIGAR=1X;DP=28;DPB=28;DPRA=1;EPP=9.52472;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.68;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=998;RO=25;RPL=0;RPP=9.52472;RPPR=57.2971;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:11,0:11:444:0:0:0,-3.31133,-40.3147 0/1:5:3,2:3:119:2:81:-6.18058,0,-9.58935 0/1:9:8,1:8:314:1:41:-1.3853,0,-25.9123 0/0:3:3,0:3:121:0:0:0,-0.90309,-11.28 dDocent_Contig_11939 84 . T C 268.079 . AB=0.481481;ABP=3.09072;AC=2;AF=0.25;AN=8;AO=13;CIGAR=1X;DP=55;DPB=55;DPRA=0.964286;EPP=31.2394;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=0.692308;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=419;QR=1505;RO=42;RPL=13;RPP=31.2394;RPPR=94.2121;RPR=0;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:15:15,0:15:538:0:0:0,-4.51545,-48.7558 0/1:15:10,5:10:356:5:150:-9.28058,0,-27.866 0/1:12:4,8:4:144:8:269:-20.9253,0,-9.70126 0/0:13:13,0:13:467:0:0:0,-3.91339,-42.3692 dDocent_Contig_11940 8 . G A 99.4213 . AB=0.5;ABP=3.0103;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=41;DPB=41;DPRA=1.41176;EPP=13.8677;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.944444;PAO=0;PQA=0;PQR=0;PRO=0;QA=191;QR=1382;RO=36;RPL=0;RPP=13.8677;RPPR=81.1833;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:9:9,0:9:349:0:0:0,-2.70927,-31.7708 0/0:16:15,1:15:574:1:39:0,-0.919915,-48.1051 0/0:8:8,0:8:308:0:0:0,-2.40824,-28.0822 0/1:8:4,4:4:151:4:152:-11.641,0,-11.5491 dDocent_Contig_11941 11 . G A 1239.79 . AB=0.378378;ABP=12.5178;AC=2;AF=0.25;AN=8;AO=28;CIGAR=1X2M1X;DP=77;DPB=77;DPRA=8.22222;EPP=18.2106;EPPR=42.0968;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1066;QR=697;RO=18;RPL=0;RPP=63.8115;RPPR=42.0968;RPR=28;RUN=1;SAF=21;SAP=18.2106;SAR=7;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:24:8,7,9:8:313:7,9:264,347:-26.0901,-6.86809,-30.4975,0,-4.11411,-23.0322 1|0:40:10,13,17:10:384:13,17:491,663:-60.2075,-22.9815,-50.5873,-8.71396,0,-35.1206 1|0:10:0,8,2:0:0:8,2:311,79:-32.4474,-6.89557,-4.48733,-25.9451,0,-25.3431 0|0:3:0,0,3:0:0:0,3:0,114:-10.6318,-10.6318,-10.6318,-0.90309,-0.90309,0 dDocent_Contig_11942 33 . T C 2268.72 . AB=0.634146;ABP=15.8273;AC=5;AF=0.625;AN=8;AO=73;CIGAR=1X;DP=104;DPB=104;DPRA=0;EPP=161.528;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=59.0548;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.986301;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2908;QR=1257;RO=31;RPL=0;RPP=161.528;RPPR=70.3259;RPR=73;RUN=1;SAF=73;SAP=161.528;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:8,20:8:326:20:789:-60.9292,0,-21.281 1/1:22:1,21:1:41:21:831:-71.0106,-2.52809,0 0/1:20:8,12:8:321:12:479:-37.4386,0,-23.2371 0/1:34:14,20:14:569:20:809:-62.8914,0,-41.3169 dDocent_Contig_11945 48 . G A 1960.81 . AB=0.453416;ABP=6.04497;AC=4;AF=0.5;AN=8;AO=73;CIGAR=1X;DP=161;DPB=161;DPRA=0;EPP=161.528;EPPR=185.513;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.90411;PAIREDR=0.988636;PAO=0;PQA=0;PQR=0;PRO=0;QA=2785;QR=3326;RO=88;RPL=0;RPP=161.528;RPPR=185.513;RPR=73;RUN=1;SAF=73;SAP=161.528;SAR=0;SRF=88;SRP=194.1;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:49:11,38:11:412:38:1487:-119.339,0,-22.6772 0/1:47:26,21:26:1006:21:756:-54.2001,0,-76.6898 0/1:54:48,6:48:1797:6:225:-4.35468,0,-145.732 0/1:11:3,8:3:111:8:317:-25.5846,0,-7.04259 dDocent_Contig_11947 30 . G A 1799.81 . AB=0.623529;ABP=14.2764;AC=5;AF=0.625;AN=8;AO=58;CIGAR=1X;DP=90;DPB=90;DPRA=0;EPP=128.956;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.551724;PAIREDR=0.75;PAO=0;PQA=0;PQR=0;PRO=0;QA=2329;QR=1281;RO=32;RPL=0;RPP=128.956;RPPR=72.4974;RPR=58;RUN=1;SAF=58;SAP=128.956;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:13,11:13:523:11:444:-33.0911,0,-40.1917 0/1:35:12,23:12:474:23:934:-73.825,0,-32.47 0/1:26:7,19:7:284:19:753:-60.2667,0,-18.1072 1/1:5:0,5:0:0:5:198:-18.1965,-1.50515,0 dDocent_Contig_11948 18 . G T 484.745 . AB=0.365385;ABP=11.1951;AC=3;AF=0.375;AN=8;AO=19;CIGAR=1X;DP=58;DPB=58;DPRA=2.88889;EPP=44.2683;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=760;QR=1486;RO=39;RPL=0;RPP=44.2683;RPPR=87.6977;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:14,10:14:533:10:397:-28.8623,0,-41.0819 0/1:17:10,7:10:395:7:282:-20.6352,0,-30.7918 0/1:11:9,2:9:340:2:81:-4.3744,0,-27.6405 0/0:6:6,0:6:218:0:0:0,-1.80618,-19.9696 dDocent_Contig_11949 22 . G A 2244.32 . AB=0.581395;ABP=10.4337;AC=4;AF=0.5;AN=8;AO=75;CIGAR=1X;DP=129;DPB=129;DPRA=0;EPP=165.871;EPPR=120.27;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2993;QR=2142;RO=54;RPL=0;RPP=165.871;RPPR=120.27;RPR=75;RUN=1;SAF=75;SAP=165.871;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:47:22,25:22:882:25:1002:-76.3261,0,-65.5411 0/1:40:13,27:13:506:27:1062:-83.8304,0,-33.8381 0/1:30:17,13:17:672:13:527:-38.7464,0,-51.7728 0/1:12:2,10:2:82:10:402:-32.9266,0,-4.16732 dDocent_Contig_11951 114 . C T 230.181 . AB=0.145833;ABP=55.3066;AC=4;AF=0.666667;AN=6;AO=12;CIGAR=1X;DP=53;DPB=53;DPRA=0;EPP=29.068;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=426;QR=1402;RO=41;RPL=0;RPP=29.068;RPPR=92.0407;RPR=12;RUN=1;SAF=0;SAP=29.068;SAR=12;SRF=0;SRP=92.0407;SRR=41;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:5:0,5:0:0:5:178:-16.3687,-1.50515,0 0/1:38:32,6:32:1098:6:214:-8.16869,0,-87.6881 0/1:10:9,1:9:304:1:34:-0.388611,0,-24.6783 ./.:.:.:.:.:.:.:. dDocent_Contig_11952 14 . C G 190.821 . AB=0;ABP=0;AC=5;AF=0.625;AN=8;AO=4;CIGAR=1X2M;DP=21;DPB=21;DPRA=0.2;EPP=5.18177;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.5;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=157;QR=589;RO=15;RPL=0;RPP=11.6962;RPPR=35.5824;RPR=4;RUN=1;SAF=3;SAP=5.18177;SAR=1;SRF=15;SRP=35.5824;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:10:10,0,0:10:391:0,0:0,0:0,-3.0103,-35.547,-3.0103,-35.547,-35.547 0|1:7:5,2,0:5:198:2,0:81,0:-5.57852,0,-16.0878,-7.08367,-16.6899,-23.3716 1|1:2:0,0,2:0:0:0,2:0,78:-7.40278,-7.40278,-7.40278,-0.60206,-0.60206,0 1|1:2:0,0,2:0:0:0,2:0,79:-7.49763,-7.49763,-7.49763,-0.60206,-0.60206,0 dDocent_Contig_11953 30 . T A 734.749 . AB=0.442623;ABP=4.7546;AC=4;AF=0.5;AN=8;AO=27;CIGAR=1X;DP=61;DPB=61;DPRA=0;EPP=61.6401;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.941176;PAO=0;PQA=0;PQR=0;PRO=0;QA=1086;QR=1341;RO=34;RPL=0;RPP=61.6401;RPPR=76.8404;RPR=27;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:3,7:3:120:7:279:-22.4708,0,-8.17701 0/1:8:6,2:6:245:2:81:-5.27749,0,-20.0212 0/1:25:17,8:17:660:8:324:-22.0031,0,-52.2012 0/1:18:8,10:8:316:10:402:-31.1213,0,-23.3856 dDocent_Contig_11955 22 . A T 54.9051 . AB=0.16;ABP=28.1125;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=49;DPB=49;DPRA=3.125;EPP=11.6962;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=156;QR=1770;RO=45;RPL=0;RPP=11.6962;RPPR=100.727;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:21,4:21:817:4:156:-6.88837,0,-66.3246 0/0:10:10,0:10:399:0:0:0,-3.0103,-36.2686 0/0:10:10,0:10:394:0:0:0,-3.0103,-35.8184 0/0:4:4,0:4:160:0:0:0,-1.20412,-14.784 dDocent_Contig_11956 53 . C T 158.66 . AB=0.195122;ABP=36.112;AC=2;AF=0.25;AN=8;AO=9;CIGAR=9M1X;DP=64;DPB=64.2;DPRA=21;EPP=22.5536;EPPR=118.098;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.888889;PAIREDR=0.716981;PAO=0;PQA=0;PQR=0;PRO=0;QA=364;QR=2080;RO=53;RPL=0;RPP=22.5536;RPPR=118.098;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:17:9,2,6:9:356:2,6:75,242:-17.2597,-13.8325,-42.5246,0,-23.1756,-27.5093 0|1:24:22,0,2:22:860:0,2:0,81:-0.461014,-7.08367,-77.7744,0,-71.0941,-70.4921 0|0:22:21,0,1:21:825:0,1:0,41:0,-6.32163,-74.1619,-2.52809,-70.777,-70.476 0|0:1:1,0,0:1:39:0,0:0,0:0,-0.30103,-3.89656,-0.30103,-3.89656,-3.89656 dDocent_Contig_11958 91 . T C 236.64 . AB=0.5;ABP=3.0103;AC=1;AF=0.25;AN=4;AO=10;CIGAR=1X;DP=27;DPB=27;DPRA=2.85714;EPP=24.725;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=345;QR=566;RO=17;RPL=10;RPP=24.725;RPPR=39.9253;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 0/1:20:10,10:10:325:10:345:-25.3629,0,-23.5463 0/0:7:7,0:7:241:0:0:0,-2.10721,-22.0265 dDocent_Contig_11961 153 . T C 31.718 . AB=0.222222;ABP=9.04217;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=24;DPB=24;DPRA=1.2;EPP=7.35324;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=78;QR=800;RO=22;RPL=0;RPP=7.35324;RPPR=50.7827;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=50.7827;SRR=22;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 0/1:9:7,2:7:239:2:78:-4.6942,0,-19.1251 0/0:12:12,0:12:454:0:0:0,-3.61236,-41.208 0/0:3:3,0:3:107:0:0:0,-0.90309,-9.98121 dDocent_Contig_11962 13 . C G 44.8229 . AB=0.4;ABP=3.44459;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=78;DPB=78;DPRA=0.625;EPP=11.6962;EPPR=163.699;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=157;QR=2951;RO=74;RPL=0;RPP=11.6962;RPPR=163.699;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=74;SRP=163.699;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:45:45,0:45:1804:0:0:0,-13.5463,-162.576 0/0:25:23,2:23:908:2:76:0,-0.311076,-74.811 0/1:5:3,2:3:119:2:81:-6.18058,0,-9.59024 0/0:3:3,0:3:120:0:0:0,-0.90309,-11.1877 dDocent_Contig_11964 133 . C T 394.617 . AB=0.777778;ABP=15.074;AC=1;AF=0.166667;AN=6;AO=14;CIGAR=1X;DP=51;DPB=51;DPRA=1.09091;EPP=3.0103;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=512;QR=1408;RO=37;RPL=0;RPP=33.4109;RPPR=83.3548;RPR=14;RUN=1;SAF=7;SAP=3.0103;SAR=7;SRF=0;SRP=83.3548;SRR=37;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 0/1:18:4,14:4:142:14:512:-40.9846,0,-7.70742 0/0:24:24,0:24:917:0:0:0,-7.22472,-82.8456 0/0:9:9,0:9:349:0:0:0,-2.70927,-31.7708 dDocent_Contig_11965 50 . C T 132.348 . AB=0.21875;ABP=24.9965;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=76;DPB=76;DPRA=1.45455;EPP=18.2106;EPPR=152.842;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=267;QR=2761;RO=69;RPL=7;RPP=18.2106;RPPR=152.842;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=69;SRP=152.842;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:32:25,7:25:1010:7:267:-14.7577,0,-81.5617 0/0:28:28,0:28:1111:0:0:0,-8.42884,-100.273 0/0:16:16,0:16:640:0:0:0,-4.81648,-57.9354 ./.:.:.:.:.:.:.:. dDocent_Contig_11966 7 . T A 342.255 . AB=0.128205;ABP=143.488;AC=4;AF=0.5;AN=8;AO=15;CIGAR=1X1M;DP=117;DPB=117;DPRA=0;EPP=35.5824;EPPR=124.613;GTI=0;LEN=1;MEANALT=3.25;MQM=29.4667;MQMR=58.875;NS=4;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=0.517857;PAO=0;PQA=0;PQR=0;PRO=0;QA=442;QR=2141;RO=56;RPL=0;RPP=35.5824;RPPR=124.613;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:43:26,2,12,3:26:1000:2,12,3:78,467,87:-12.2207,-17.4212,-98.9232,0,-79.5161,-78.5233,-13.9244,-93.4157,-76.0314,-95.1368 0|1:40:17,12,3,7:17:652:12,3,7:452,116,217:-10.4356,-0.363116,-50.2965,-10.5415,-48.9114,-63.1915,0,-38.4012,-48.5707,-51.4681 0|1:21:7,1,10,2:7:263:1,10,2:38,387,51:-14.0387,-14.8343,-36.1302,0,-20.3224,-18.612,-12.6984,-32.9898,-18.1984,-33.6972 0|1:13:6,0,4,3:6:226:0,4,3:0,156,87:-4.8557,-6.66188,-25.2443,0,-18.5955,-17.3914,-0.529541,-19.1417,-12.5194,-18.2387 dDocent_Contig_11968 8 . G A 238.552 . AB=0.151261;ABP=128.718;AC=1;AF=0.125;AN=8;AO=19;CIGAR=1X;DP=263;DPB=263;DPRA=2.09412;EPP=44.2683;EPPR=530.678;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.421053;PAIREDR=0.580247;PAO=0;PQA=0;PQR=0;PRO=0;QA=714;QR=9378;RO=243;RPL=0;RPP=44.2683;RPPR=530.678;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=243;SRP=530.678;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:119:101,18:101:3913:18:675:-25.2532,0,-316.437 0/0:59:57,1:57:2193:1:39:0,-13.9528,-193.697 0/0:41:41,0:41:1570:0:0:0,-12.3422,-141.57 0/0:44:44,0:44:1702:0:0:0,-13.2453,-153.438 dDocent_Contig_11969 10 . A C 317.903 . AB=0.419355;ABP=4.76149;AC=4;AF=0.5;AN=8;AO=13;CIGAR=1X;DP=31;DPB=31;DPRA=0;EPP=31.2394;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=0.923077;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=519;QR=709;RO=18;RPL=0;RPP=31.2394;RPPR=42.0968;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:7:1,6:1:39:6:242:-20.0501,0,-1.78935 0/1:7:5,2:5:200:2:77:-5.20162,0,-16.2723 0/1:11:9,2:9:348:2:81:-4.3744,0,-28.3655 0/1:6:3,3:3:122:3:119:-9.28883,0,-9.56631 dDocent_Contig_11974 22 . A T 59.1578 . AB=0;ABP=0;AC=2;AF=0.25;AN=8;AO=2;CIGAR=4M1X1M2I6M;DP=58;DPB=58.8333;DPRA=1.08333;EPP=7.35324;EPPR=113.755;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=77;QR=2016;RO=51;RPL=0;RPP=7.35324;RPPR=113.755;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:24:23,0,0:23:906:0,0:0,0:0,-6.92369,-81.7298,-6.92369,-81.7298,-81.7298 0|0:26:23,0,2:23:913:0,2:0,77:0,-6.92369,-82.1567,-0.458552,-75.8348,-75.2328 0|1:3:1,2,0:1:41:2,0:81,0:-6.78264,0,-3.19148,-7.08367,-3.79354,-10.4694 0|1:5:4,1,0:4:156:1,0:40,0:-2.49053,0,-12.9113,-3.69465,-13.2123,-16.5094 dDocent_Contig_11976 27 . T C 34.928 . AB=0.109375;ABP=87.8334;AC=3;AF=0.375;AN=8;AO=7;CIGAR=1X;DP=69;DPB=69;DPRA=4.26667;EPP=18.2106;EPPR=137.642;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.967742;PAO=0;PQA=0;PQR=0;PRO=0;QA=283;QR=2468;RO=62;RPL=0;RPP=18.2106;RPPR=137.642;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:16,2:16:646:2:81:-2.26719,0,-53.0557 0/1:22:19,3:19:743:3:120:-4.56465,0,-60.5677 0/1:24:22,2:22:892:2:82:-0.554958,0,-73.3608 0/0:5:5,0:5:187:0:0:0,-1.50515,-17.1896 dDocent_Contig_11977 111 . G A 34.435 . AB=0.4;ABP=3.44459;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X;DP=55;DPB=55;DPRA=0.3;EPP=7.35324;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=70;QR=1771;RO=53;RPL=0;RPP=7.35324;RPPR=118.098;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=118.098;SRR=53;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:31:31,0:31:1027:0:0:0,-9.33193,-92.7292 0/1:5:3,2:3:104:2:70:-5.14218,0,-8.19794 0/0:16:16,0:16:535:0:0:0,-4.81648,-48.4686 0/0:3:3,0:3:105:0:0:0,-0.90309,-9.79616 dDocent_Contig_11978 61 . T G 1213.15 . 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T A 636.053 . AB=0.337838;ABP=19.9126;AC=3;AF=0.375;AN=8;AO=25;CIGAR=1X;DP=76;DPB=76;DPRA=12.3333;EPP=57.2971;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1002;QR=2047;RO=51;RPL=0;RPP=57.2971;RPPR=113.755;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:17,13:17:675:13:516:-37.7524,0,-52.0445 0/1:36:30,6:30:1213:6:245:-11.5924,0,-98.6052 0/1:8:2,6:2:80:6:241:-19.6581,0,-5.18355 0/0:2:2,0:2:79:0:0:0,-0.60206,-7.49724 dDocent_Contig_11980 56 . T A 303.436 . AB=0.391304;ABP=5.3706;AC=4;AF=0.5;AN=8;AO=11;CIGAR=1X;DP=27;DPB=27;DPRA=4.16667;EPP=26.8965;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=439;QR=623;RO=16;RPL=11;RPP=26.8965;RPPR=37.7539;RPR=0;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:8,5:8:315:5:196:-14.0988,0,-24.8018 0/1:10:6,4:6:228:4:162:-11.9564,0,-17.8708 0/0:2:2,0:2:80:0:0:0,-0.60206,-7.59179 1/1:2:0,2:0:0:2:81:-7.68573,-0.60206,0 dDocent_Contig_11981 13 . C T 2451.04 . AB=0.206693;ABP=382.608;AC=5;AF=0.625;AN=8;AO=111;CIGAR=1X;DP=560;DPB=560;DPRA=3.72464;EPP=244.044;EPPR=978.001;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4430;QR=17900;RO=449;RPL=0;RPP=244.044;RPPR=978.001;RPR=111;RUN=1;SAF=111;SAP=244.044;SAR=0;SRF=449;SRP=978.001;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:508:403,105:403:16058:105:4194:-224.498,0,-1291.04 1/1:2:0,2:0:0:2:78:-7.40278,-0.60206,0 0/0:46:46,0:46:1842:0:0:0,-13.8474,-165.986 1/1:4:0,4:0:0:4:158:-14.6007,-1.20412,0 dDocent_Contig_11982 109 . T C 58.6505 . AB=0.428571;ABP=3.32051;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=42;DPB=42;DPRA=0.4;EPP=9.52472;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=105;QR=1362;RO=39;RPL=0;RPP=9.52472;RPPR=87.6977;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=87.6977;SRR=39;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:25:25,0:25:863:0:0:0,-7.52575,-77.9798 0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3815 0/1:7:4,3:4:143:3:105:-7.68895,0,-11.1142 ./.:.:.:.:.:.:.:. dDocent_Contig_11983 84 . C G 70.7575 . AB=0.4;ABP=3.87889;AC=2;AF=0.25;AN=8;AO=4;CIGAR=1X;DP=45;DPB=45;DPRA=0.285714;EPP=11.6962;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=142;QR=1495;RO=41;RPL=4;RPP=11.6962;RPPR=92.0407;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:25:25,0:25:908:0:0:0,-7.52575,-82.0391 0/0:10:10,0:10:370:0:0:0,-3.0103,-33.6502 0/1:4:2,2:2:72:2:69:-5.34842,0,-5.63252 0/1:6:4,2:4:145:2:73:-5.12512,0,-11.5994 dDocent_Contig_11985 71 . T G 157.915 . AB=0.411765;ABP=4.1599;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=26;DPB=26;DPRA=0.944444;EPP=18.2106;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=263;QR=731;RO=19;RPL=7;RPP=18.2106;RPPR=44.2683;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:9,4:9:350:4:152:-10.1361,0,-27.948 0/0:9:9,0:9:342:0:0:0,-2.70927,-31.1367 ./.:.:.:.:.:.:.:. 0/1:4:1,3:1:39:3:111:-9.1498,0,-2.69244 dDocent_Contig_11987 190 . A T 781.742 . AB=0.508772;ABP=3.0484;AC=4;AF=0.5;AN=8;AO=29;CIGAR=1X;DP=57;DPB=57;DPRA=0;EPP=65.983;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1125;QR=1085;RO=28;RPL=29;RPP=65.983;RPPR=63.8115;RPR=0;RUN=1;SAF=0;SAP=65.983;SAR=29;SRF=0;SRP=63.8115;SRR=28;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:11,3:11:415:3:123:-7.25037,0,-33.4709 0/1:24:4,20:4:160:20:779:-63.1946,0,-7.55871 0/1:14:9,5:9:362:5:182:-12.5106,0,-28.7298 0/1:5:4,1:4:148:1:41:-2.58942,0,-12.1696 dDocent_Contig_11989 171 . T A 224.232 . AB=0;ABP=0;AC=4;AF=0.5;AN=8;AO=6;CIGAR=1X;DP=18;DPB=18;DPRA=0.5;EPP=16.0391;EPPR=29.068;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.166667;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=234;QR=464;RO=12;RPL=6;RPP=16.0391;RPPR=29.068;RPR=0;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=29.068;SRR=12;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5,0:5:192:0:0:0,-1.50515,-17.6501 0/0:7:7,0:7:272:0:0:0,-2.10721,-24.8472 1/1:2:0,2:0:0:2:78:-7.40347,-0.60206,0 1/1:4:0,4:0:0:4:156:-14.4173,-1.20412,0 dDocent_Contig_11990 8 . G T 394.304 . AB=0.386364;ABP=7.94546;AC=4;AF=0.5;AN=8;AO=17;CIGAR=1X1M1X;DP=44;DPB=44;DPRA=0;EPP=31.7504;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.647059;PAIREDR=0.925926;PAO=0;PQA=0;PQR=0;PRO=0;QA=651;QR=1013;RO=27;RPL=0;RPP=39.9253;RPPR=61.6401;RPR=17;RUN=1;SAF=16;SAP=31.7504;SAR=1;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:10:8,2:8:312:2:74:-4.01513,0,-25.4346 0|1:10:6,4:6:227:4:155:-11.3151,0,-17.7824 0|1:7:5,2:5:178:2:78:-5.29626,0,-14.2596 0|1:17:8,9:8:296:9:344:-26.2007,0,-21.8724 dDocent_Contig_11991 191 . G A 63.6219 . AB=0.272727;ABP=7.94546;AC=1;AF=0.25;AN=4;AO=3;CIGAR=1X;DP=22;DPB=22;DPRA=1;EPP=9.52472;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=753;RO=19;RPL=3;RPP=9.52472;RPPR=44.2683;RPR=0;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=44.2683;SRR=19;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:8,3:8:306:3:122:-8.06116,0,-24.5814 0/0:11:11,0:11:447:0:0:0,-3.31133,-40.5859 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_11992 24 . G T 112.621 . AB=0.2;ABP=18.6449;AC=3;AF=0.375;AN=8;AO=5;CIGAR=1X;DP=32;DPB=32;DPRA=1.90909;EPP=13.8677;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=199;QR=1070;RO=27;RPL=0;RPP=13.8677;RPPR=61.6401;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:16,4:16:633:4:160:-8.76283,0,-51.2872 1/1:1:0,1:0:0:1:39:-3.89656,-0.30103,0 0/0:4:4,0:4:156:0:0:0,-1.20412,-14.4164 0/0:7:7,0:7:281:0:0:0,-2.10721,-25.6626 dDocent_Contig_11993 60 . G A 863.19 . AB=0.484375;ABP=3.14602;AC=4;AF=0.5;AN=8;AO=31;CIGAR=2X;DP=64;DPB=64;DPRA=0;EPP=70.3259;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.870968;PAIREDR=0.969697;PAO=0;PQA=0;PQR=0;PRO=0;QA=1239;QR=1294;RO=33;RPL=31;RPP=70.3259;RPPR=74.6689;RPR=0;RUN=1;SAF=31;SAP=70.3259;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:8:2,6:2:71:6:241:-19.6582,0,-4.33334 0|1:20:14,6:14:553:6:238:-15.7737,0,-44.0937 0|1:30:15,15:15:588:15:600:-45.3072,0,-44.2284 0|1:6:2,4:2:82:4:160:-12.9772,0,-5.9735 dDocent_Contig_11994 83 . C T 421.241 . AB=0.586207;ABP=4.88226;AC=1;AF=0.125;AN=8;AO=17;CIGAR=1X;DP=56;DPB=56;DPRA=3.22222;EPP=39.9253;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=577;QR=1320;RO=39;RPL=17;RPP=39.9253;RPPR=87.6977;RPR=0;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:12,17:12:407:17:577:-43.522,0,-28.2269 0/0:11:11,0:11:371:0:0:0,-3.31133,-33.716 0/0:4:4,0:4:138:0:0:0,-1.20412,-12.7604 0/0:12:12,0:12:404:0:0:0,-3.61236,-36.6851 dDocent_Contig_11995 18 . A C 47.2109 . AB=0.137931;ABP=36.0317;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=151;DPB=151;DPRA=0.911392;EPP=18.2106;EPPR=315.702;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.902778;PAO=0;PQA=0;PQR=0;PRO=0;QA=284;QR=5704;RO=144;RPL=0;RPP=18.2106;RPPR=315.702;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=144;SRP=315.702;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:30:30,0:30:1194:0:0:0,-9.0309,-107.735 0/1:29:25,4:25:1019:4:164:-6.42003,0,-83.271 0/0:43:40,3:40:1557:3:120:0,-1.7566,-129.168 0/0:49:49,0:49:1934:0:0:0,-14.7505,-174.261 dDocent_Contig_11996 53 . T A 60.0201 . AB=0.173913;ABP=24.253;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=52;DPB=52;DPRA=2.37931;EPP=11.6962;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=155;QR=1935;RO=48;RPL=4;RPP=11.6962;RPPR=107.241;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:19,4:19:759:4:155:-7.39978,0,-61.7061 0/0:21:21,0:21:851:0:0:0,-6.32163,-76.9004 0/0:3:3,0:3:122:0:0:0,-0.90309,-11.3725 0/0:5:5,0:5:203:0:0:0,-1.50515,-18.6531 dDocent_Contig_11997 41 . C T 214.358 . AB=0.777778;ABP=9.04217;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=49;DPB=49;DPRA=0.675;EPP=18.2106;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=283;QR=1666;RO=42;RPL=0;RPP=18.2106;RPPR=94.2121;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:19:19,0:19:757:0:0:0,-5.71957,-68.4514 0/0:20:20,0:20:786:0:0:0,-6.0206,-71.0577 0/1:9:2,7:2:82:7:283:-23.1341,0,-5.07041 0/0:1:1,0:1:41:0:0:0,-0.30103,-4.09457 dDocent_Contig_12000 18 . C A 291.031 . AB=0.157143;ABP=145.955;AC=4;AF=0.5;AN=8;AO=22;CIGAR=1X;DP=140;DPB=140;DPRA=0;EPP=50.7827;EPPR=259.244;GTI=0;LEN=1;MEANALT=1;MQM=59.8636;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=0.727273;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=857;QR=4652;RO=118;RPL=0;RPP=50.7827;RPPR=259.244;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=118;SRP=259.244;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:31,5:31:1243:5:175:-5.24792,0,-101.309 0/1:30:27,3:27:1050:3:122:-2.34159,0,-85.7606 0/1:40:32,8:32:1262:8:319:-17.036,0,-101.818 0/1:34:28,6:28:1097:6:241:-11.8286,0,-88.7835 dDocent_Contig_12001 11 . A G 1783.76 . AB=0.466667;ABP=4.31318;AC=4;AF=0.5;AN=8;AO=63;CIGAR=1X;DP=135;DPB=135;DPRA=0;EPP=139.813;EPPR=159.356;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2501;QR=2839;RO=72;RPL=0;RPP=139.813;RPPR=159.356;RPR=63;RUN=1;SAF=63;SAP=139.813;SAR=0;SRF=72;SRP=159.356;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:44:30,14:30:1202:14:545:-36.1366,0,-95.2084 0/1:37:10,27:10:370:27:1079:-86.2552,0,-22.4953 0/1:35:22,13:22:876:13:513:-35.9769,0,-68.6115 0/1:19:10,9:10:391:9:364:-27.4048,0,-29.8235 dDocent_Contig_12002 8 . G A 522.152 . AB=0.16;ABP=28.1125;AC=2;AF=0.25;AN=8;AO=4;CIGAR=1X14M;DP=77;DPB=75.5333;DPRA=0;EPP=11.6962;EPPR=102.898;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=4;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=0.913043;PAO=0;PQA=0;PQR=0;PRO=0;QA=149;QR=1804;RO=46;RPL=0;RPP=11.6962;RPPR=102.898;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:29:18,1,10,0,0:18:702:1,10,0,0:39,384,0,0:-26.0936,-28.3057,-85.7099,0,-54.4955,-54.6911,-31.5121,-86.011,-57.7014,-89.2169,-31.5121,-86.011,-57.7014,-89.2169,-89.2169 0|1:25:12,6,2,4,0:12:471:6,2,4,0:232,73,149,0:-15.4511,0,-36.9434,-13.1026,-32.7886,-51.2429,-6.87007,-26.5569,-39.652,-44.4088,-19.0634,-38.7496,-51.8449,-45.6129,-57.8065 0|0:20:16,0,0,0,4:16:631:0,0,0,4:0,0,0,160:-8.76283,-13.5793,-65.4925,-13.5793,-65.4925,-65.4925,-13.5793,-65.4925,-65.4925,-65.4925,0,-52.3117,-52.3117,-52.3117,-51.1076 1|0:3:0,1,2,0,0:0:0:1,2,0,0:33,76,0,0:-9.26379,-6.6122,-6.31117,-2.9981,0,-2.39604,-9.26379,-6.6122,-2.9981,-9.26379,-9.26379,-6.6122,-2.9981,-9.26379,-9.26379 dDocent_Contig_12003 28 . A G 60.5998 . AB=0.142857;ABP=26.2761;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X11M1X1M;DP=28;DPB=22.8571;DPRA=3;EPP=9.52472;EPPR=42.0968;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=108;QR=712;RO=18;RPL=0;RPP=9.52472;RPPR=42.0968;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:2:2,0,0:2:78:0,0:0,0:0,-0.60206,-7.4033,-0.60206,-7.4033,-7.4033 0|0:16:7,2,6:7:277:2,6:72,239:-7.2844,-3.49004,-25.7639,0,-16.9435,-21.0044 0|0:5:5,0,0:5:197:0,0:0,0:0,-1.50515,-18.1066,-1.50515,-18.1066,-18.1066 0|1:5:4,1,0:4:160:1,0:36,0:-2.09312,0,-13.2787,-3.29724,-13.5797,-16.5092 dDocent_Contig_12004 55 . G T 41.2676 . AB=0.214286;ABP=12.937;AC=2;AF=0.25;AN=8;AO=3;CIGAR=1X;DP=38;DPB=38;DPRA=0.583333;EPP=9.52472;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=120;QR=1372;RO=35;RPL=3;RPP=9.52472;RPPR=79.0118;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:7:7,0:7:269:0:0:0,-2.10721,-24.5713 0/1:6:4,2:4:142:2:80:-5.78561,0,-11.3208 0/0:17:17,0:17:682:0:0:0,-5.11751,-61.7104 0/1:8:7,1:7:279:1:40:-1.58744,0,-23.0713 dDocent_Contig_12005 24 . A G 562.204 . AB=0.458333;ABP=3.73412;AC=4;AF=0.5;AN=8;AO=22;CIGAR=1X;DP=48;DPB=48;DPRA=0;EPP=50.7827;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.954545;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=851;QR=1025;RO=26;RPL=0;RPP=50.7827;RPPR=59.4686;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:8:3,5:3:110:5:193:-15.3291,0,-7.8503 0/1:16:10,6:10:398:6:240:-17.1581,0,-31.3624 0/1:15:6,9:6:238:9:338:-26.2487,0,-17.2785 0/1:9:7,2:7:279:2:80:-4.8823,0,-22.771 dDocent_Contig_12006 132 . C T 83.0547 . AB=0.2;ABP=34.2795;AC=2;AF=0.25;AN=8;AO=8;CIGAR=1X;DP=59;DPB=59;DPRA=2.10526;EPP=20.3821;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=247;QR=1674;RO=51;RPL=0;RPP=20.3821;RPPR=113.755;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=113.755;SRR=51;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:16,6:16:558:6:178:-9.68887,0,-43.9267 0/1:18:16,2:16:508:2:69:-1.13412,0,-40.6045 0/0:10:10,0:10:315:0:0:0,-3.0103,-28.6581 0/0:9:9,0:9:293:0:0:0,-2.70927,-26.6874 dDocent_Contig_12007 19 . G T 51.851 . AB=0.666667;ABP=3.73412;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X;DP=33;DPB=33;DPRA=0.3;EPP=7.35324;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=1230;RO=31;RPL=0;RPP=7.35324;RPPR=70.3259;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:7:7,0:7:283:0:0:0,-2.10721,-25.8434 0/0:22:22,0:22:866:0:0:0,-6.62266,-78.2473 0/0:1:1,0:1:40:0:0:0,-0.30103,-3.99568 0/1:3:1,2:1:41:2:82:-6.87659,0,-3.19148 dDocent_Contig_12008 14 . G A 715.857 . AB=0.363636;ABP=15.4469;AC=4;AF=0.5;AN=8;AO=28;CIGAR=1X;DP=77;DPB=77;DPRA=0;EPP=63.8115;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.964286;PAIREDR=0.959184;PAO=0;PQA=0;PQR=0;PRO=0;QA=1119;QR=1921;RO=49;RPL=0;RPP=63.8115;RPPR=109.412;RPR=28;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:12,8:12:461:8:328:-23.8697,0,-35.8134 0/1:26:13,13:13:510:13:521:-39.4092,0,-38.4162 0/1:20:16,4:16:634:4:163:-9.03783,0,-51.3721 0/1:11:8,3:8:316:3:107:-6.66686,0,-25.4912 dDocent_Contig_12009 10 . A G 224.377 . AB=0.322581;ABP=11.486;AC=3;AF=0.375;AN=8;AO=10;CIGAR=1X;DP=42;DPB=42;DPRA=0.939394;EPP=24.725;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.4;PAIREDR=0.78125;PAO=0;PQA=0;PQR=0;PRO=0;QA=400;QR=1221;RO=32;RPL=0;RPP=24.725;RPPR=72.4974;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:6:4,2:4:149:2:82:-5.9735,0,-11.9621 0/1:11:6,5:6:238:5:195:-14.6117,0,-18.483 0/0:11:11,0:11:409:0:0:0,-3.31133,-37.14 0/1:14:11,3:11:425:3:123:-7.25037,0,-34.3846 dDocent_Contig_12010 7 . T A 332.786 . AB=0.333333;ABP=13.1438;AC=1;AF=0.125;AN=8;AO=14;CIGAR=1X;DP=73;DPB=73;DPRA=4.06452;EPP=33.4109;EPPR=131.127;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.785714;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=522;QR=2244;RO=59;RPL=0;RPP=33.4109;RPPR=131.127;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=59;SRP=131.127;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:42:28,14:28:1064:14:522:-34.6765,0,-83.4217 0/0:7:7,0:7:268:0:0:0,-2.10721,-24.4834 0/0:11:11,0:11:421:0:0:0,-3.31133,-38.2427 0/0:13:13,0:13:491:0:0:0,-3.91339,-44.5346 dDocent_Contig_12011 13 . C T 291.672 . AB=0.176471;ABP=18.4661;AC=3;AF=0.5;AN=6;AO=10;CIGAR=1X1M1X;DP=29;DPB=29;DPRA=2.4;EPP=24.725;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=388;QR=714;RO=18;RPL=0;RPP=24.725;RPPR=42.0968;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:7:0,7:0:0:7:272:-24.8461,-2.10721,0 .:.:.:.:.:.:.:. 0|1:17:13,3:13:514:3:116:-5.84393,0,-41.6875 0|0:5:5,0:5:200:0:0:0,-1.50515,-18.3793 dDocent_Contig_12013 18 . C T 153.751 . AB=0.333333;ABP=8.07707;AC=2;AF=0.25;AN=8;AO=7;CIGAR=1X;DP=36;DPB=36;DPRA=1.4;EPP=5.80219;EPPR=57.5966;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.285714;PAIREDR=0.931034;PAO=0;PQA=0;PQR=0;PRO=0;QA=270;QR=1148;RO=29;RPL=0;RPP=18.2106;RPPR=65.983;RPR=7;RUN=1;SAF=5;SAP=5.80219;SAR=2;SRF=28;SRP=57.5966;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:8:8,0:8:313:0:0:0,-2.40824,-28.5316 0/0:7:7,0:7:282:0:0:0,-2.10721,-25.7528 0/1:5:4,1:4:151:1:41:-2.58942,0,-12.4515 0/1:16:10,6:10:402:6:229:-16.1565,0,-31.7231 dDocent_Contig_12014 55 . T C 1630.84 . AB=0.451128;ABP=5.76954;AC=4;AF=0.5;AN=8;AO=60;CIGAR=1X;DP=133;DPB=133;DPRA=0;EPP=133.299;EPPR=161.528;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=0.966667;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2324;QR=2896;RO=73;RPL=60;RPP=133.299;RPPR=161.528;RPR=0;RUN=1;SAF=60;SAP=133.299;SAR=0;SRF=73;SRP=161.528;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:40:23,17:23:912:17:666:-48.2349,0,-70.3482 0/1:48:32,16:32:1284:16:625:-42.1395,0,-101.378 0/1:29:14,15:14:536:15:588:-44.5324,0,-39.846 0/1:16:4,12:4:164:12:445:-35.5751,0,-10.3334 dDocent_Contig_12015 8 . G A 200.5 . AB=0.294118;ABP=15.5282;AC=3;AF=0.375;AN=8;AO=10;CIGAR=1X;DP=40;DPB=40;DPRA=1.88889;EPP=24.725;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.6;PAIREDR=0.866667;PAO=0;PQA=0;PQR=0;PRO=0;QA=384;QR=1162;RO=30;RPL=0;RPP=24.725;RPPR=68.1545;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:8,3:8:307:3:117:-7.59905,0,-24.6804 0/1:6:3,3:3:117:3:113:-8.73279,0,-9.1042 0/1:17:13,4:13:505:4:154:-9.11608,0,-40.6817 0/0:6:6,0:6:233:0:0:0,-1.80618,-21.3401 dDocent_Contig_12016 20 . T C 384.831 . AB=0.451613;ABP=3.64073;AC=2;AF=0.25;AN=8;AO=14;CIGAR=1X;DP=37;DPB=37;DPRA=5.16667;EPP=33.4109;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=561;QR=883;RO=23;RPL=0;RPP=33.4109;RPPR=52.9542;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:7,2:7:271:2:75:-4.41107,0,-22.0461 0/1:22:10,12:10:376:12:486:-37.469,0,-27.5681 0/0:1:1,0:1:39:0:0:0,-0.30103,-3.89656 0/0:5:5,0:5:197:0:0:0,-1.50515,-18.1062 dDocent_Contig_12017 40 . C T 336.233 . AB=0.3;ABP=13.4334;AC=4;AF=0.5;AN=8;AO=16;CIGAR=1X;DP=59;DPB=59;DPRA=0;EPP=37.7539;EPPR=5.48477;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=0;PAIREDR=0.651163;PAO=0;PQA=0;PQR=0;PRO=0;QA=562;QR=1627;RO=43;RPL=0;RPP=37.7539;RPPR=96.3836;RPR=16;RUN=1;SAF=0;SAP=37.7539;SAR=16;SRF=25;SRP=5.48477;SRR=18;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:24:22,2:22:844:2:62:0,-1.33652,-70.3842 0/1:14:11,3:11:421:3:108:-5.86075,0,-34.0224 0/1:16:10,6:10:362:6:213:-14.7,0,-28.1013 1/1:5:0,5:0:0:5:179:-16.4604,-1.50515,0 dDocent_Contig_12018 12 . C T 397.43 . AB=0.230769;ABP=19.3799;AC=2;AF=0.25;AN=8;AO=6;CIGAR=1M1X2M;DP=34;DPB=28.5;DPRA=3.25;EPP=16.0391;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=232;QR=680;RO=17;RPL=0;RPP=16.0391;RPPR=39.9253;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:7:0,7,0:0:0:7,0:286,0:-26.1148,-2.10721,0,-26.1148,-2.10721,-26.1148 0|1:16:9,3,4:9:360:3,4:117,154:-9.9313,-3.02187,-31.7841,0,-20.0483,-28.4583 0|1:10:8,0,2:8:320:0,2:0,78:-4.393,-6.80124,-33.1692,0,-26.7596,-26.1575 0|0:1:0,1,0:0:0:1,0:27,0:-2.69978,-0.30103,0,-2.69978,-0.30103,-2.69978 dDocent_Contig_12019 142 . A G 508.607 . AB=0.538462;ABP=3.51141;AC=3;AF=0.375;AN=8;AO=21;CIGAR=1X;DP=58;DPB=58;DPRA=0.684211;EPP=48.6112;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=744;QR=1261;RO=37;RPL=0;RPP=48.6112;RPPR=83.3548;RPR=21;RUN=1;SAF=0;SAP=48.6112;SAR=21;SRF=0;SRP=83.3548;SRR=37;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:10,3:10:322:3:107:-6.06878,0,-25.3764 0/0:19:19,0:19:656:0:0:0,-5.71957,-59.3587 0/1:17:6,11:6:216:11:385:-29.8677,0,-14.673 0/1:9:2,7:2:67:7:252:-20.3197,0,-3.65357 dDocent_Contig_12020 146 . A T 193.247 . AB=0.285714;ABP=16.9698;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X;DP=45;DPB=45;DPRA=7;EPP=24.725;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=345;QR=1235;RO=35;RPL=0;RPP=24.725;RPPR=79.0118;RPR=10;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=79.0118;SRR=35;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:35:25,10:25:880:10:345:-20.8472,0,-68.9822 0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674 0/0:2:2,0:2:67:0:0:0,-0.60206,-6.36284 ./.:.:.:.:.:.:.:. dDocent_Contig_12021 173 . T G 457.846 . AB=0.394737;ABP=6.66752;AC=5;AF=0.625;AN=8;AO=18;CIGAR=1X;DP=41;DPB=41;DPRA=0;EPP=42.0968;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=679;QR=874;RO=23;RPL=18;RPP=42.0968;RPPR=52.9542;RPR=0;RUN=1;SAF=0;SAP=42.0968;SAR=18;SRF=0;SRP=52.9542;SRR=23;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:6:1,5:1:41:5:184:-15.1087,0,-2.28839 1/1:3:0,3:0:0:3:119:-11.0945,-0.90309,0 0/1:20:14,6:14:528:6:230:-15.0424,0,-41.8322 0/1:12:8,4:8:305:4:146:-9.88429,0,-24.1896 dDocent_Contig_12022 31 . G A 37.5471 . AB=0.285714;ABP=5.80219;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=38;DPB=38;DPRA=0.451613;EPP=7.35324;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=1422;RO=36;RPL=0;RPP=7.35324;RPPR=81.1833;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:6:6,0:6:244:0:0:0,-1.80618,-22.3388 0/0:25:25,0:25:980:0:0:0,-7.52575,-88.4913 0/1:7:5,2:5:198:2:81:-5.57852,0,-16.0878 ./.:.:.:.:.:.:.:. dDocent_Contig_12023 25 . T A 1044.11 . AB=0.590164;ABP=7.31765;AC=4;AF=0.5;AN=8;AO=36;CIGAR=2X;DP=61;DPB=61;DPRA=0;EPP=81.1833;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=57.8333;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.5;PAIREDR=0.76;PAO=0;PQA=0;PQR=0;PRO=0;QA=1438;QR=994;RO=25;RPL=0;RPP=81.1833;RPPR=57.2971;RPR=36;RUN=1;SAF=36;SAP=81.1833;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:22:12,10:12:466:10:403:-30.0072,0,-35.6604 0|1:13:6,7:6:244:7:281:-21.1283,0,-18.4254 0|1:12:5,7:5:202:7:282:-22.0556,0,-14.9495 0|1:14:2,12:2:82:12:472:-38.6149,0,-3.56526 dDocent_Contig_12024 47 . G A 77.6828 . AB=0;ABP=0;AC=2;AF=0.333333;AN=6;AO=2;CIGAR=1X;DP=15;DPB=15;DPRA=0.307692;EPP=7.35324;EPPR=31.2394;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=80;QR=528;RO=13;RPL=0;RPP=7.35324;RPPR=31.2394;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=13;SRP=31.2394;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:7:7,0:7:286:0:0:0,-2.10721,-26.1148 ./.:.:.:.:.:.:.:. 0/0:6:6,0:6:242:0:0:0,-1.80618,-22.1564 1/1:2:0,2:0:0:2:80:-7.59179,-0.60206,0 dDocent_Contig_12025 11 . A T 111.636 . AB=0.111111;ABP=203.992;AC=3;AF=0.375;AN=8;AO=20;CIGAR=1X;DP=193;DPB=193;DPRA=0;EPP=46.4397;EPPR=378.675;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=0.739884;PAO=0;PQA=0;PQR=0;PRO=0;QA=806;QR=6952;RO=173;RPL=0;RPP=46.4397;RPPR=378.675;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=173;SRP=378.675;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:75:66,9:66:2637:9:363:-10.4565,0,-214.879 0/0:40:37,3:37:1493:3:123:0,-0.576411,-123.148 0/1:51:46,5:46:1848:5:203:-3.30053,0,-151.162 0/1:27:24,3:24:974:3:117:-2.78148,0,-79.8296 dDocent_Contig_12027 18 . C G 462.962 . AB=0.311475;ABP=21.8416;AC=3;AF=0.375;AN=8;AO=20;CIGAR=1X;DP=78;DPB=78;DPRA=0;EPP=46.4397;EPPR=126.784;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.85;PAIREDR=0.947368;PAO=0;PQA=0;PQR=0;PRO=0;QA=806;QR=2318;RO=57;RPL=0;RPP=46.4397;RPPR=126.784;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:17:15,1:15:605:1:40:0,-1.21045,-50.8012 0/1:19:11,8:11:449:8:325:-23.8999,0,-35.0463 0/1:29:22,7:22:896:7:286:-17.3849,0,-72.2151 0/1:13:9,4:9:368:4:155:-10.4093,0,-29.572 dDocent_Contig_12029 44 . A T 56.6763 . AB=0.230769;ABP=11.1951;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=115;DPB=115;DPRA=0.382353;EPP=9.52472;EPPR=246.215;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=121;QR=4436;RO=112;RPL=0;RPP=9.52472;RPPR=246.215;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=112;SRP=246.215;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:41:41,0:41:1635:0:0:0,-12.3422,-147.378 0/0:43:43,0:43:1685:0:0:0,-12.9443,-151.884 0/0:18:18,0:18:719:0:0:0,-5.41854,-65.0358 0/1:13:10,3:10:397:3:121:-7.3666,0,-32.1747 dDocent_Contig_12030 29 . A G 128.548 . AB=0.169811;ABP=53.2;AC=3;AF=0.375;AN=8;AO=10;CIGAR=1X;DP=69;DPB=69;DPRA=0;EPP=24.725;EPPR=131.127;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.6;PAIREDR=0.610169;PAO=0;PQA=0;PQR=0;PRO=0;QA=407;QR=2344;RO=59;RPL=0;RPP=24.725;RPPR=131.127;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=59;SRP=131.127;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:16:15,1:15:586:1:41:0,-0.721913,-48.9828 0/1:24:19,5:19:767:5:202:-11.3374,0,-62.1239 0/1:19:17,2:17:672:2:82:-2.06011,0,-55.085 0/1:10:8,2:8:319:2:82:-4.76938,0,-26.0675 dDocent_Contig_12031 9 . A G 115.269 . AB=0.333333;ABP=6.62942;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=80;DPB=80;DPRA=0.692308;EPP=13.8677;EPPR=165.871;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.986667;PAO=0;PQA=0;PQR=0;PRO=0;QA=193;QR=2814;RO=75;RPL=0;RPP=13.8677;RPPR=165.871;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=75;SRP=165.871;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:28:28,0:28:1047:0:0:0,-8.42884,-94.5375 0/0:13:13,0:13:492:0:0:0,-3.91339,-44.6254 0/0:24:24,0:24:901:0:0:0,-7.22472,-81.4061 0/1:15:10,5:10:374:5:193:-13.2259,0,-29.4954 dDocent_Contig_12032 8 . G A 1071.4 . AB=0.141176;ABP=98.0697;AC=0;AF=0;AN=8;AO=12;CIGAR=1X1M1X2M;DP=104;DPB=104;DPRA=0;EPP=29.068;EPPR=87.6977;GTI=0;LEN=1;MEANALT=3.66667;MQM=22.6667;MQMR=60;NS=4;NUMALT=4;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=272;QR=1526;RO=39;RPL=0;RPP=29.068;RPPR=87.6977;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:27:7,0,4,13,3:7:279:0,4,13,3:0,88,479,82:-37.1635,-39.2707,-62.2689,-33.6633,-56.6559,-55.4517,0,-23.069,-17.4768,-19.1556,-33.6174,-56.6147,-51.0078,-17.4202,-55.7116 0|0:26:10,0,6,8,2:10:390:0,6,8,2:0,128,290,60:-20.7462,-23.7565,-55.8556,-15.7183,-47.7995,-45.9933,0,-32.1609,-24.1246,-29.7526,-19.502,-51.6037,-43.5538,-27.9091,-51.0016 0|0:32:14,2,2,10,3:14:538:2,2,10,3:79,56,359,88:-25.1002,-22.8055,-66.3981,-25.4278,-63.1106,-69.012,0,-37.7184,-40.3371,-41.2134,-23.1229,-60.805,-63.4199,-38.0327,-66.4052 0|0:19:8,0,0,11,0:8:319:0,0,11,0:0,0,410,0:-31.5286,-33.9368,-60.2191,-33.9368,-60.2191,-60.2191,0,-26.6698,-26.6698,-23.3584,-33.9368,-60.2191,-60.2191,-26.6698,-60.2191 dDocent_Contig_12033 94 . C T 461.968 . AB=0.408163;ABP=6.59988;AC=5;AF=0.625;AN=8;AO=21;CIGAR=1X;DP=50;DPB=50;DPRA=0;EPP=48.6112;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=721;QR=954;RO=29;RPL=21;RPP=48.6112;RPPR=65.983;RPR=0;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:16,13:16:514:13:447:-31.8286,0,-37.8355 0/1:15:9,6:9:304:6:202:-13.9945,0,-23.1733 0/1:5:4,1:4:136:1:36:-2.09312,0,-11.0707 1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0 dDocent_Contig_12034 7 . T C 256.066 . AB=0.265306;ABP=26.4533;AC=3;AF=0.375;AN=8;AO=13;CIGAR=1X;DP=96;DPB=96;DPRA=0.347518;EPP=31.2394;EPPR=181.071;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=496;QR=3109;RO=82;RPL=0;RPP=31.2394;RPPR=181.071;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=82;SRP=181.071;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:47:47,0:47:1787:0:0:0,-14.1484,-161.081 0/1:30:21,8:21:785:8:307:-18.9699,0,-61.9563 0/1:8:6,2:6:229:2:76:-4.80643,0,-18.5676 0/1:11:8,3:8:308:3:113:-7.22808,0,-24.7708 dDocent_Contig_12035 129 . A T 181.663 . AB=0.218182;ABP=40.9518;AC=2;AF=0.25;AN=8;AO=12;CIGAR=1X;DP=104;DPB=104;DPRA=1.12245;EPP=29.068;EPPR=202.786;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=416;QR=3111;RO=92;RPL=0;RPP=29.068;RPPR=202.786;RPR=12;RUN=1;SAF=0;SAP=29.068;SAR=12;SRF=0;SRP=202.786;SRR=92;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:43:35,8:35:1186:8:276:-12.2316,0,-94.0947 0/0:35:35,0:35:1174:0:0:0,-10.536,-105.958 0/0:14:14,0:14:475:0:0:0,-4.21442,-43.075 0/1:12:8,4:8:276:4:140:-9.33257,0,-21.5636 dDocent_Contig_12036 57 . A G 399.457 . AB=0.347826;ABP=12.2627;AC=3;AF=0.375;AN=8;AO=16;CIGAR=1X;DP=55;DPB=55;DPRA=1.7037;EPP=37.7539;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=645;QR=1562;RO=39;RPL=16;RPP=37.7539;RPPR=87.6977;RPR=0;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:9:9,0:9:356:0:0:0,-2.70927,-32.4013 0/1:28:23,5:23:926:5:201:-10.0417,0,-75.2154 0/1:11:2,9:2:81:9:363:-29.723,0,-4.3744 0/1:7:5,2:5:199:2:81:-5.57852,0,-16.1814 dDocent_Contig_12037 20 . A G 337.143 . AB=0.35;ABP=10.8276;AC=4;AF=0.5;AN=8;AO=14;CIGAR=1X;DP=40;DPB=40;DPRA=0;EPP=33.4109;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.923077;PAO=0;PQA=0;PQR=0;PRO=0;QA=572;QR=1015;RO=26;RPL=0;RPP=33.4109;RPPR=59.4686;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:7:6,1:6:245:1:41:-1.98736,0,-20.3223 0/1:13:9,4:9:364:4:162:-11.0536,0,-29.2108 0/1:10:6,4:6:231:4:164:-12.1396,0,-18.1447 0/1:10:5,5:5:175:5:205:-15.8247,0,-13.0744 dDocent_Contig_12038 20 . G T 358.738 . AB=0.5;ABP=3.0103;AC=2;AF=0.25;AN=8;AO=13;CIGAR=1X;DP=30;DPB=30;DPRA=6.5;EPP=31.2394;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=515;QR=678;RO=17;RPL=0;RPP=31.2394;RPPR=39.9253;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:7,10:7:283:10:393:-30.6079,0,-20.7259 0/1:9:6,3:6:234:3:122:-8.66322,0,-18.7197 0/0:3:3,0:3:121:0:0:0,-0.90309,-11.2802 0/0:1:1,0:1:40:0:0:0,-0.30103,-3.99568 dDocent_Contig_12039 13 . A G 219.398 . AB=0.105263;ABP=54.4399;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1M1X2M1X1M1X1M3I4M;DP=86;DPB=92.25;DPRA=0;EPP=11.6962;EPPR=131.127;GTI=0;LEN=1;MEANALT=3;MQM=38;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=152;QR=2303;RO=59;RPL=0;RPP=11.6962;RPPR=131.127;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=59;SRP=131.127;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:39:29,2,0,6:29:1145:2,0,6:69,0,215:-8.84364,-12.511,-106.175,-17.5735,-106.777,-111.84,0,-89.2505,-94.3124,-92.5063 0|0:38:24,4,4,6:24:924:4,4,6:149,152,238:-12.3882,-8.38765,-83.0538,-8.22804,-72.87,-82.8954,0,-64.6629,-64.5045,-74.0869 0|1:5:4,1,0,0:4:154:1,0,0:38,0,0:-1.99385,0,-12.7274,-3.19797,-13.0284,-15.8696,-3.19797,-13.0284,-15.8696,-15.8696 0|0:4:2,0,0,2:2:80:0,0,2:0,0,76:-6.01014,-6.6122,-13.2123,-6.6122,-13.2123,-13.2123,0,-6.98973,-6.98973,-6.38767 dDocent_Contig_12040 17 . T C 1340.56 . AB=0.505376;ABP=3.03365;AC=4;AF=0.5;AN=8;AO=47;CIGAR=1X;DP=93;DPB=93;DPRA=0;EPP=105.07;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.978261;PAO=0;PQA=0;PQR=0;PRO=0;QA=1867;QR=1798;RO=46;RPL=0;RPP=105.07;RPPR=102.898;RPR=47;RUN=1;SAF=47;SAP=105.07;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:19,11:19:741:11:438:-30.7453,0,-57.9858 0/1:27:15,12:15:584:12:480:-35.4243,0,-44.7701 0/1:33:11,22:11:433:22:870:-68.6815,0,-29.3914 0/1:3:1,2:1:40:2:79:-6.59454,0,-3.09259 dDocent_Contig_12041 18 . G T 746.913 . AB=0.333333;ABP=26.8965;AC=4;AF=0.5;AN=8;AO=33;CIGAR=1X;DP=99;DPB=99;DPRA=0;EPP=74.6689;EPPR=146.327;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1227;QR=2441;RO=66;RPL=0;RPP=74.6689;RPPR=146.327;RPR=33;RUN=1;SAF=33;SAP=74.6689;SAR=0;SRF=66;SRP=146.327;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:32:26,6:26:946:6:226:-11.0686,0,-75.8146 0/1:50:34,16:34:1281:16:600:-39.2845,0,-100.535 0/1:4:3,1:3:105:1:32:-1.99519,0,-8.5909 0/1:13:3,10:3:109:10:369:-29.6402,0,-6.25411 dDocent_Contig_12042 18 . T C 2383.83 . AB=0.75;ABP=55.1256;AC=5;AF=0.625;AN=8;AO=75;CIGAR=1X;DP=99;DPB=99;DPRA=0;EPP=165.871;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3004;QR=942;RO=24;RPL=0;RPP=165.871;RPPR=55.1256;RPR=75;RUN=1;SAF=75;SAP=165.871;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:62:13,49:13:519:49:1959:-157.84,0,-28.3917 0/1:24:10,14:10:383:14:560:-43.519,0,-27.596 0/1:10:1,9:1:40:9:363:-30.0244,0,-0.985379 1/1:3:0,3:0:0:3:122:-11.3725,-0.90309,0 dDocent_Contig_12043 91 . T G 101.882 . AB=0.25;ABP=18.2106;AC=3;AF=0.375;AN=8;AO=7;CIGAR=1X;DP=29;DPB=29;DPRA=9.33333;EPP=18.2106;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.909091;PAO=0;PQA=0;PQR=0;PRO=0;QA=245;QR=773;RO=22;RPL=7;RPP=18.2106;RPPR=50.7827;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:8:7,1:7:246:1:35:-1.09039,0,-20.0737 0/0:1:1,0:1:29:0:0:0,-0.30103,-2.89966 0/1:8:6,2:6:212:2:70:-4.23916,0,-17.0169 0/1:12:8,4:8:286:4:140:-9.33257,0,-22.4732 dDocent_Contig_12044 203 . C T 86.8208 . AB=0.238095;ABP=15.5221;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=55;DPB=55;DPRA=1.23529;EPP=13.8677;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=183;QR=1798;RO=50;RPL=5;RPP=13.8677;RPPR=111.584;RPR=0;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=111.584;SRR=50;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:33:33,0:33:1189:0:0:0,-9.93399,-107.313 0/1:21:16,5:16:579:5:183:-10.5051,0,-46.1218 0/0:1:1,0:1:30:0:0:0,-0.30103,-2.99957 ./.:.:.:.:.:.:.:. dDocent_Contig_12045 7 . T A 37.6776 . AB=0.2;ABP=14.7363;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=121;DPB=121;DPRA=0;EPP=18.2106;EPPR=250.558;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.5965;NS=4;NUMALT=1;ODDS=0;PAIRED=0.285714;PAIREDR=0.614035;PAO=0;PQA=0;PQR=0;PRO=0;QA=256;QR=4309;RO=114;RPL=0;RPP=18.2106;RPPR=250.558;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=114;SRP=250.558;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:30:28,2:28:1070:2:78:0,-1.62743,-89.2021 0/0:51:50,1:50:1875:1:33:0,-12.0534,-165.55 0/0:25:24,1:24:922:1:38:0,-3.72848,-79.4907 0/1:15:12,3:12:442:3:107:-5.46663,0,-35.6015 dDocent_Contig_12046 21 . T C 1243.77 . AB=0.0769231;ABP=43.4331;AC=5;AF=0.625;AN=8;AO=2;CIGAR=1M1X1M2X;DP=71;DPB=72.4;DPRA=1.85714;EPP=7.35324;EPPR=48.6112;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=78;QR=848;RO=21;RPL=0;RPP=7.35324;RPPR=48.6112;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:28:10,3,15,0:10:405:3,15,0:90,603,0:-46.7905,-43.4378,-75.9315,0,-27.1452,-28.9837,-49.8008,-76.8346,-33.4991,-83.2053 0|1:26:9,1,14,2:9:362:1,14,2:33,569,78:-44.2609,-44.5781,-74.1099,0,-27.4752,-25.6506,-40.5597,-68.0005,-23.4538,-69.7922 1|1:14:1,1,12,0:1:40:1,12,0:41,424,0:-33.9205,-30.8327,-33.8307,-0.322223,-0.223335,0,-34.2215,-34.1318,-3.61236,-37.52 0|1:3:1,2,0,0:1:41:2,0,0:66,0,0:-4.79516,0,-3.19148,-5.09619,-3.79354,-8.51679,-5.09619,-3.79354,-8.51679,-8.51679 dDocent_Contig_12047 89 . G A 30.2632 . AB=0.148148;ABP=32.0437;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=87;DPB=87;DPRA=1.35;EPP=11.6962;EPPR=183.243;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=139;QR=2851;RO=83;RPL=4;RPP=11.6962;RPPR=183.243;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=83;SRP=183.243;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:31:31,0:31:1050:0:0:0,-9.33193,-94.8052 0/1:27:23,4:23:796:4:139:-4.72488,0,-63.8315 0/0:21:21,0:21:728:0:0:0,-6.32163,-65.8421 0/0:8:8,0:8:277:0:0:0,-2.40824,-25.267 dDocent_Contig_12048 11 . G T 115.049 . AB=0.184211;ABP=35.9253;AC=2;AF=0.25;AN=8;AO=7;CIGAR=1X2M1X1M1X;DP=47;DPB=47;DPRA=4.22222;EPP=18.2106;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=276;QR=1547;RO=40;RPL=0;RPP=18.2106;RPPR=89.8692;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:29:23,6:23:879:6:236:-12.8821,0,-70.69 0|1:9:8,1:8:318:1:40:-1.28641,0,-26.2783 0|0:7:7,0:7:276:0:0:0,-2.10721,-25.2094 0|0:2:2,0:2:74:0:0:0,-0.60206,-7.02577 dDocent_Contig_12049 57 . T C 1842.93 . AB=0.0420168;ABP=219.811;AC=0;AF=0;AN=8;AO=5;CIGAR=6M1X;DP=123;DPB=113.857;DPRA=0;EPP=13.8677;EPPR=115.927;GTI=0;LEN=1;MEANALT=2.66667;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=195;QR=2021;RO=52;RPL=5;RPP=13.8677;RPPR=115.927;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:29:9,17,2:9:346:17,2:652,80:-50.7959,0,-23.2828,-46.9135,-21.8075,-74.7164 0|0:47:17,29,1:17:663:29,1:1154,40:-89.8961,0,-45.7572,-91.7184,-51.1915,-145.911 0|0:43:24,16,2:24:932:16,2:631,75:-44.7054,0,-71.7735,-45.79,-70.4489,-121.765 0|0:4:2,2,0:2:80:2,0:79,0:-6.29312,0,-6.38767,-6.89518,-6.98973,-13.4878 dDocent_Contig_12050 12 . G A 33.1566 . AB=0.4;ABP=3.44459;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=32;DPB=32;DPRA=0.37037;EPP=7.35324;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=8.67362e-19;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=70;QR=1173;RO=30;RPL=0;RPP=7.35324;RPPR=68.1545;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 0/0:13:13,0:13:506:0:0:0,-3.91339,-45.8782 0/0:14:14,0:14:548:0:0:0,-4.21442,-49.6553 0/1:5:3,2:3:119:2:70:-5.13936,0,-9.58986 dDocent_Contig_12051 9 . A G 273.648 . AB=0.317073;ABP=14.9269;AC=3;AF=0.375;AN=8;AO=13;CIGAR=1X;DP=55;DPB=55;DPRA=0.97619;EPP=31.2394;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.904762;PAO=0;PQA=0;PQR=0;PRO=0;QA=489;QR=1584;RO=42;RPL=0;RPP=31.2394;RPPR=94.2121;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:5,7:5:195:7:268:-20.871,0,-14.3118 0/1:12:10,2:10:381:2:77:-3.69678,0,-31.0322 0/0:14:14,0:14:517:0:0:0,-4.21442,-46.8676 0/1:17:13,4:13:491:4:144:-8.19276,0,-39.4184 dDocent_Contig_12052 11 . G T 728.674 . AB=0.394366;ABP=9.89173;AC=4;AF=0.5;AN=8;AO=28;CIGAR=1X;DP=71;DPB=71;DPRA=0;EPP=63.8115;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1113;QR=1715;RO=43;RPL=0;RPP=63.8115;RPPR=96.3836;RPR=28;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:21,9:21:848:9:357:-23.4604,0,-67.6003 0/1:10:5,5:5:198:5:198:-15.1871,0,-15.186 0/1:16:5,11:5:183:11:443:-35.4092,0,-12.0073 0/1:15:12,3:12:486:3:115:-6.20865,0,-39.576 dDocent_Contig_12053 11 . C G 174.749 . AB=0.222222;ABP=27.1378;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=84;DPB=84;DPRA=2.25;EPP=20.3821;EPPR=168.042;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.934211;PAO=0;PQA=0;PQR=0;PRO=0;QA=326;QR=3072;RO=76;RPL=0;RPP=20.3821;RPPR=168.042;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=76;SRP=168.042;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:28,8:28:1128:8:326:-18.8728,0,-90.9585 0/0:13:13,0:13:527:0:0:0,-3.91339,-47.7766 0/0:28:28,0:28:1135:0:0:0,-8.42884,-102.429 0/0:7:7,0:7:282:0:0:0,-2.10721,-25.7526 dDocent_Contig_12054 33 . C T 265.875 . AB=0.357143;ABP=7.97367;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X;DP=53;DPB=53;DPRA=2.24;EPP=24.725;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=402;QR=1717;RO=43;RPL=0;RPP=24.725;RPPR=96.3836;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:18,10:18:732:10:402:-28.1103,0,-57.7751 0/0:18:18,0:18:699:0:0:0,-5.41854,-63.2343 0/0:7:7,0:7:286:0:0:0,-2.10721,-26.1148 ./.:.:.:.:.:.:.:. dDocent_Contig_12055 15 . T C 151.094 . AB=0;ABP=0;AC=2;AF=0.25;AN=8;AO=4;CIGAR=1X;DP=31;DPB=31;DPRA=0.444444;EPP=11.6962;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=157;QR=1079;RO=27;RPL=0;RPP=11.6962;RPPR=61.6401;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:4:0,4:0:0:4:157:-14.5072,-1.20412,0 0/0:13:13,0:13:511:0:0:0,-3.91339,-46.336 0/0:10:10,0:10:408:0:0:0,-3.0103,-37.0806 0/0:4:4,0:4:160:0:0:0,-1.20412,-14.7838 dDocent_Contig_12058 152 . C G 471.796 . AB=0.166667;ABP=20.3821;AC=6;AF=0.75;AN=8;AO=15;CIGAR=1X;DP=30;DPB=30;DPRA=0;EPP=35.5824;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=597;QR=571;RO=15;RPL=0;RPP=35.5824;RPPR=35.5824;RPR=15;RUN=1;SAF=0;SAP=35.5824;SAR=15;SRF=0;SRP=35.5824;SRR=15;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:5:0,5:0:0:5:203:-18.6531,-1.50515,0 1/1:7:0,7:0:0:7:275:-25.1157,-2.10721,0 0/1:9:7,2:7:254:2:79:-4.78797,0,-20.4919 0/1:9:8,1:8:317:1:40:-1.28641,0,-26.1845 dDocent_Contig_12059 107 . N C 295.818 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=10;CIGAR=1X;DP=10;DPB=10;DPRA=0;EPP=24.725;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=0.7;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=313;QR=0;RO=0;RPL=0;RPP=24.725;RPPR=0;RPR=10;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:96:-8.95798,-0.90309,0 1/1:5:0,5:0:0:5:155:-14.2571,-1.50515,0 ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:62:-5.88896,-0.60206,0 dDocent_Contig_12060 38 . T C 659.397 . AB=0.438596;ABP=4.877;AC=4;AF=0.5;AN=8;AO=25;CIGAR=1X;DP=57;DPB=57;DPRA=0;EPP=57.2971;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=985;QR=1282;RO=32;RPL=0;RPP=57.2971;RPPR=72.4974;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:17,6:17:684:6:241:-15.1426,0,-54.9664 0/1:20:12,8:12:475:8:309:-22.1472,0,-37.0736 0/1:8:1,7:1:41:7:277:-22.8906,0,-1.68633 0/1:6:2,4:2:82:4:158:-12.7938,0,-5.9735 dDocent_Contig_12061 107 . N T 97.0363 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=104;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:104:-9.70309,-0.90309,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_12063 8 . G A 517.542 . AB=0.2875;ABP=34.3881;AC=3;AF=0.375;AN=8;AO=23;CIGAR=1X;DP=91;DPB=91;DPRA=2.42424;EPP=52.9542;EPPR=150.67;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.6471;NS=4;NUMALT=1;ODDS=0;PAIRED=0.434783;PAIREDR=0.985294;PAO=0;PQA=0;PQR=0;PRO=0;QA=888;QR=2594;RO=68;RPL=0;RPP=52.9542;RPPR=150.67;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=68;SRP=150.67;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:25,3:25:936:3:110:-1.83197,0,-76.1242 0/1:45:28,17:28:1078:17:661:-46.2808,0,-83.7791 0/0:11:11,0:11:424:0:0:0,-3.31133,-38.3212 0/1:7:4,3:4:156:3:117:-8.80317,0,-12.3101 dDocent_Contig_12064 31 . T C 185 . AB=0.296296;ABP=12.7417;AC=2;AF=0.25;AN=8;AO=8;CIGAR=1X;DP=52;DPB=52;DPRA=1.08;EPP=20.3821;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=325;QR=1742;RO=44;RPL=0;RPP=20.3821;RPPR=98.5551;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:17,4:17:652:4:164:-8.82827,0,-52.6837 0/0:24:24,0:24:967:0:0:0,-7.22472,-87.3279 0/1:6:2,4:2:82:4:161:-13.0691,0,-5.9735 0/0:1:1,0:1:41:0:0:0,-0.30103,-4.09457 dDocent_Contig_12066 8 . G T 174.559 . AB=0.25;ABP=24.725;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=41;DPB=41;DPRA=20;EPP=24.725;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=358;QR=1187;RO=31;RPL=0;RPP=24.725;RPPR=70.3259;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:16,8:16:616:8:285:-18.7646,0,-48.5553 0/1:16:14,2:14:534:2:73:-2.11462,0,-43.5871 0/0:1:1,0:1:37:0:0:0,-0.30103,-3.69783 ./.:.:.:.:.:.:.:. dDocent_Contig_12067 61 . C T 33.9939 . AB=0.166667;ABP=26.1727;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=51;DPB=51;DPRA=2.66667;EPP=11.6962;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=0.75;PAIREDR=0.914894;PAO=0;PQA=0;PQR=0;PRO=0;QA=130;QR=1600;RO=47;RPL=4;RPP=11.6962;RPPR=105.07;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:20,4:20:670:4:130:-4.79658,0,-53.3897 0/0:16:16,0:16:549:0:0:0,-4.81648,-49.7358 0/0:10:10,0:10:346:0:0:0,-3.0103,-31.4746 0/0:1:1,0:1:35:0:0:0,-0.30103,-3.49863 dDocent_Contig_12070 11 . G A 103.887 . AB=0.206897;ABP=24.6501;AC=2;AF=0.25;AN=8;AO=6;CIGAR=1X;DP=52;DPB=52;DPRA=1.26087;EPP=16.0391;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.333333;PAIREDR=0.586957;PAO=0;PQA=0;PQR=0;PRO=0;QA=241;QR=1810;RO=46;RPL=0;RPP=16.0391;RPPR=102.898;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:11,0:11:435:0:0:0,-3.31133,-39.5011 0/1:11:7,4:7:282:4:159:-11.3806,0,-22.4413 0/0:12:12,0:12:459:0:0:0,-3.61236,-41.6446 0/1:18:16,2:16:634:2:82:-2.36114,0,-51.97 dDocent_Contig_12071 101 . N A 402.785 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=11;CIGAR=1X2I5X7I1X;DP=11;DPB=25.1429;DPRA=0;EPP=26.8965;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=4;NUMALT=1;ODDS=3.38813e-21;PAIRED=0.363636;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=423;QR=0;RO=0;RPL=0;RPP=26.8965;RPPR=0;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:5:0,5:0:0:5:192:-17.6498,-1.50515,0 1|1:2:0,2:0:0:2:76:-7.21467,-0.60206,0 1|1:1:0,1:0:0:1:39:-3.89656,-0.30103,0 1|1:3:0,3:0:0:3:116:-10.8177,-0.90309,0 dDocent_Contig_12072 107 . N C 94.7589 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=3;CIGAR=1X1M1D3M1X;DP=3;DPB=2.57143;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=95;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. 1|1:2:0,2:0:0:2:65:-6.17345,-0.60206,0 1|1:1:0,1:0:0:1:30:-2.99957,-0.30103,0 .:.:.:.:.:.:.:. dDocent_Contig_12073 21 . T C 200.498 . AB=0.5;ABP=3.0103;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=55;DPB=55;DPRA=1.02439;EPP=18.2106;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=281;QR=1768;RO=48;RPL=0;RPP=18.2106;RPPR=107.241;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:7,7:7:258:7:281:-21.4478,0,-19.3568 0/0:25:25,0:25:929:0:0:0,-7.52575,-83.912 0/0:9:9,0:9:332:0:0:0,-2.70927,-30.2287 0/0:7:7,0:7:249:0:0:0,-2.10721,-22.7462 dDocent_Contig_12074 209 . N G 157.629 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=163;QR=0;RO=0;RPL=4;RPP=11.6962;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:123:-11.4648,-0.90309,0 1/1:1:0,1:0:0:1:40:-3.99568,-0.30103,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_12076 61 . G T 197.498 . AB=0.6;ABP=3.44459;AC=3;AF=0.375;AN=8;AO=6;CIGAR=1X;DP=21;DPB=21;DPRA=0.615385;EPP=16.0391;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=243;QR=600;RO=15;RPL=6;RPP=16.0391;RPPR=35.5824;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=15;SRP=35.5824;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:5:2,3:2:82:3:122:-9.86734,0,-6.27453 0/0:8:8,0:8:319:0:0:0,-2.40824,-29.0774 1/1:3:0,3:0:0:3:121:-11.2802,-0.90309,0 0/0:5:5,0:5:199:0:0:0,-1.50515,-18.2889 dDocent_Contig_12077 60 . C T 159.259 . AB=0.25;ABP=18.2106;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=56;DPB=56;DPRA=3;EPP=18.2106;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=282;QR=1928;RO=49;RPL=7;RPP=18.2106;RPPR=109.412;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:21,7:21:823:7:282:-17.3238,0,-65.9616 0/0:17:17,0:17:669:0:0:0,-5.11751,-60.5414 0/0:7:7,0:7:277:0:0:0,-2.10721,-25.2988 0/0:4:4,0:4:159:0:0:0,-1.20412,-14.692 dDocent_Contig_12079 209 . N G 76.8682 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:81:-7.68573,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_12080 14 . T C 39.3326 . AB=0.5;ABP=3.0103;AC=1;AF=0.125;AN=8;AO=3;CIGAR=2X;DP=33;DPB=33;DPRA=1.0625;EPP=9.52472;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=0.966667;PAO=0;PQA=0;PQR=0;PRO=0;QA=111;QR=1193;RO=30;RPL=0;RPP=9.52472;RPPR=68.1545;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:8:8,0:8:323:0:0:0,-2.40824,-29.4392 0|0:8:8,0:8:316:0:0:0,-2.40824,-28.803 0|0:13:12,1:12:473:1:39:0,-0.0168255,-39.0218 0|1:4:2,2:2:81:2:72:-5.63112,0,-6.48161 dDocent_Contig_12082 136 . T C 77.505 . AB=0.75;ABP=5.18177;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=20;DPB=20;DPRA=0.75;EPP=9.52472;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=114;QR=608;RO=16;RPL=0;RPP=9.52472;RPPR=37.7539;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=37.7539;SRR=16;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:4:4,0:4:156:0:0:0,-1.20412,-14.4173 0/1:4:1,3:1:39:3:114:-9.42786,0,-2.69244 0/0:7:6,0:6:218:0:0:0,-1.80618,-19.6431 0/0:5:5,0:5:195:0:0:0,-1.50515,-17.9242 dDocent_Contig_12084 44 . G T 521.073 . AB=0;ABP=0;AC=4;AF=0.5;AN=8;AO=14;CIGAR=1X;DP=31;DPB=31;DPRA=0.823529;EPP=33.4109;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.38813e-21;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=564;QR=668;RO=17;RPL=0;RPP=33.4109;RPPR=39.9253;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:9:9,0:9:361:0:0:0,-2.70927,-32.853 0/0:8:8,0:8:307:0:0:0,-2.40824,-27.9866 1/1:7:0,7:0:0:7:283:-25.843,-2.10721,0 1/1:7:0,7:0:0:7:281:-25.6622,-2.10721,0 dDocent_Contig_12086 29 . G A 765.199 . AB=0.55102;ABP=4.11819;AC=3;AF=0.375;AN=8;AO=27;CIGAR=1X2M3X;DP=57;DPB=57;DPRA=2.04167;EPP=61.6401;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.407407;PAIREDR=0.833333;PAO=0;PQA=0;PQR=0;PRO=0;QA=1062;QR=1188;RO=30;RPL=0;RPP=61.6401;RPPR=68.1545;RPR=27;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:15:9,6:9:358:6:239:-17.3699,0,-28.0683 0|0:8:8,0:8:311:0:0:0,-2.40824,-28.351 0|1:11:3,8:3:120:8:313:-25.223,0,-7.87657 0|1:23:10,13:10:399:13:510:-39.3249,0,-29.3466 dDocent_Contig_12087 96 . C A 49.0042 . AB=0.181818;ABP=22.3561;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=37;DPB=37;DPRA=4.4;EPP=11.6962;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.909091;PAO=0;PQA=0;PQR=0;PRO=0;QA=143;QR=1140;RO=33;RPL=4;RPP=11.6962;RPPR=74.6689;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:6:6,0:6:206:0:0:0,-1.80618,-18.8767 0/1:22:18,4:18:624:4:143:-6.59879,0,-49.863 0/0:8:8,0:8:275:0:0:0,-2.40824,-25.0848 0/0:1:1,0:1:35:0:0:0,-0.30103,-3.49863 dDocent_Contig_12089 160 . C G 144.667 . AB=0.352941;ABP=6.20364;AC=2;AF=0.25;AN=8;AO=6;CIGAR=1X;DP=30;DPB=30;DPRA=1.30769;EPP=16.0391;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=0.958333;PAO=0;PQA=0;PQR=0;PRO=0;QA=246;QR=956;RO=24;RPL=6;RPP=16.0391;RPPR=55.1256;RPR=0;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=55.1256;SRR=24;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:6,5:6:245:5:205:-15.5237,0,-19.1181 0/0:8:8,0:8:323:0:0:0,-2.40824,-29.4375 0/1:6:5,1:5:203:1:41:-2.28839,0,-16.8469 0/0:5:5,0:5:185:0:0:0,-1.50515,-17.0035 dDocent_Contig_12090 154 . G A 349.144 . AB=0.5;ABP=3.0103;AC=2;AF=0.333333;AN=6;AO=13;CIGAR=1X;DP=40;DPB=40;DPRA=0.928571;EPP=31.2394;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=506;QR=1065;RO=27;RPL=0;RPP=31.2394;RPPR=61.6401;RPR=13;RUN=1;SAF=0;SAP=31.2394;SAR=13;SRF=0;SRP=61.6401;SRR=27;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 0/1:13:2,11:2:82:11:434:-35.4974,0,-3.86629 0/1:13:11,2:11:420:2:72:-2.92093,0,-34.2278 0/0:14:14,0:14:563:0:0:0,-4.21442,-51.0118 dDocent_Contig_12091 209 . N G 249.857 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=7;CIGAR=1X;DP=7;DPB=7;DPRA=0;EPP=18.2106;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0.714286;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=266;QR=0;RO=0;RPL=7;RPP=18.2106;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:4:0,4:0:0:4:145:-13.4043,-1.20412,0 ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:121:-11.28,-0.90309,0 ./.:.:.:.:.:.:.:. dDocent_Contig_12092 54 . G T 74.7592 . AB=0.214286;ABP=22.8638;AC=2;AF=0.25;AN=8;AO=6;CIGAR=1X;DP=43;DPB=43;DPRA=1.86667;EPP=16.0391;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=0.666667;PAIREDR=0.810811;PAO=0;PQA=0;PQR=0;PRO=0;QA=207;QR=1447;RO=37;RPL=6;RPP=16.0391;RPPR=83.3548;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:6:6,0:6:242:0:0:0,-1.80618,-22.1571 0/1:18:15,3:15:607:3:117:-5.49075,0,-49.5492 0/1:10:7,3:7:278:3:90:-5.38301,0,-22.3773 0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1258 dDocent_Contig_12094 46 . C A 139.398 . AB=0.428571;ABP=3.63072;AC=2;AF=0.25;AN=8;AO=6;CIGAR=1X;DP=89;DPB=89;DPRA=0.186667;EPP=16.0391;EPPR=183.243;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=231;QR=3153;RO=83;RPL=0;RPP=16.0391;RPPR=183.243;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=83;SRP=183.243;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:42:42,0:42:1610:0:0:0,-12.6433,-145.16 0/0:33:33,0:33:1240:0:0:0,-9.93399,-111.884 0/1:6:2,4:2:76:4:149:-11.9662,0,-5.40863 0/1:8:6,2:6:227:2:82:-5.37144,0,-18.384 dDocent_Contig_12095 20 . G T 47.1891 . AB=0;ABP=0;AC=0;AF=0;AN=8;AO=3;CIGAR=10M1X;DP=93;DPB=92.4545;DPRA=2.27027;EPP=9.52472;EPPR=189.757;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=123;QR=3400;RO=86;RPL=0;RPP=9.52472;RPPR=189.757;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=86;SRP=189.757;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:12:12,0,0:12:468:0,0:0,0:0,-3.61236,-42.4698,-3.61236,-42.4698,-42.4698 0|0:42:39,0,3:39:1539:0,3:0,123:0,-11.7402,-138.357,-1.17847,-128.204,-127.301 0|0:25:24,0,0:24:959:0,0:0,0:0,-7.22472,-86.2154,-7.22472,-86.2154,-86.2154 0|0:14:11,3,0:11:434:3,0:114,0:-6.4178,0,-35.2007,-9.72913,-36.1038,-45.4501 dDocent_Contig_12096 16 . T A 298.873 . AB=0.44;ABP=3.79203;AC=2;AF=0.25;AN=8;AO=11;CIGAR=1X;DP=73;DPB=73;DPRA=0.520833;EPP=26.8965;EPPR=137.642;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=445;QR=2510;RO=62;RPL=0;RPP=26.8965;RPPR=137.642;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:24:24,0:24:976:0:0:0,-7.22472,-88.1362 0/0:24:24,0:24:966:0:0:0,-7.22472,-87.2373 0/1:13:6,7:6:246:7:282:-21.8392,0,-18.6067 0/1:12:8,4:8:322:4:163:-11.4461,0,-25.7354 dDocent_Contig_12097 54 . C T 125.773 . AB=0.315789;ABP=8.61041;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=25;DPB=25;DPRA=1.58333;EPP=16.0391;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.833333;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=232;QR=700;RO=18;RPL=6;RPP=16.0391;RPPR=42.0968;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:2:1,1:1:41:1:39:-3.2945,0,-3.49251 0/1:17:11,5:11:430:5:193:-12.7938,0,-34.1306 0/0:6:6,0:6:229:0:0:0,-1.80618,-20.9739 ./.:.:.:.:.:.:.:. dDocent_Contig_12099 69 . T A 111.01 . AB=0.3125;ABP=7.89611;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=34;DPB=34;DPRA=1.77778;EPP=13.8677;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=193;QR=1105;RO=29;RPL=5;RPP=13.8677;RPPR=65.983;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:11,0:11:410:0:0:0,-3.31133,-37.2427 0/1:16:11,5:11:425:5:193:-12.9249,0,-33.7877 0/0:7:7,0:7:270:0:0:0,-2.10721,-24.6655 ./.:.:.:.:.:.:.:. dDocent_Contig_12100 8 . G C 81.8622 . AB=0.238095;ABP=15.5221;AC=2;AF=0.25;AN=8;AO=5;CIGAR=1X;DP=33;DPB=33;DPRA=1.75;EPP=13.8677;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.928571;PAO=0;PQA=0;PQR=0;PRO=0;QA=190;QR=1085;RO=28;RPL=0;RPP=13.8677;RPPR=63.8115;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:10:10,0:10:385:0:0:0,-3.0103,-35.0063 0/1:5:2,3:2:78:3:116:-9.31255,0,-5.89832 0/1:16:14,2:14:544:2:74:-2.20895,0,-44.4896 0/0:2:2,0:2:78:0:0:0,-0.60206,-7.40347 dDocent_Contig_12101 52 . T G 99.4133 . AB=0.5;ABP=3.0103;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=55;DPB=55;DPRA=1.29167;EPP=13.8677;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=192;QR=1957;RO=50;RPL=5;RPP=13.8677;RPPR=111.584;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:6:6,0:6:218:0:0:0,-1.80618,-19.9605 0/0:23:22,1:22:884:1:40:0,-2.92801,-75.8694 0/0:18:18,0:18:696:0:0:0,-5.41854,-62.955 0/1:8:4,4:4:159:4:152:-11.6403,0,-12.2837 dDocent_Contig_12103 110 . C T 58.0276 . AB=0.147541;ABP=68.8308;AC=2;AF=0.25;AN=8;AO=9;CIGAR=1X;DP=75;DPB=75;DPRA=4.35714;EPP=22.5536;EPPR=146.327;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=299;QR=2211;RO=66;RPL=0;RPP=22.5536;RPPR=146.327;RPR=9;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=146.327;SRR=66;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:39:34,5:34:1129:5:173:-4.17004,0,-90.1652 0/1:22:18,4:18:626:4:126:-5.02981,0,-50.0438 0/0:7:7,0:7:237:0:0:0,-2.10721,-21.6613 0/0:7:7,0:7:219:0:0:0,-2.10721,-20.017 dDocent_Contig_12104 135 . A G 48.3895 . AB=0;ABP=0;AC=2;AF=0.25;AN=8;AO=7;CIGAR=1X;DP=33;DPB=33;DPRA=0.833333;EPP=18.2106;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=10;MQMR=58.7308;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.961538;PAO=0;PQA=0;PQR=0;PRO=0;QA=221;QR=958;RO=26;RPL=0;RPP=18.2106;RPPR=59.4686;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=59.4686;SRR=26;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:10:8,2:8:295:2:70:0,-1.11264,-24.1391 0/0:15:15,0:15:552:0:0:0,-4.51545,-50.0196 0/0:3:3,0:3:111:0:0:0,-0.90309,-10.3539 1/1:5:0,5:0:0:5:151:-4.53766,-1.50515,0 dDocent_Contig_12105 127 . T G 693.777 . AB=0.136364;ABP=28.2783;AC=5;AF=0.625;AN=8;AO=3;CIGAR=8M2X2M1X4M;DP=83;DPB=81.9412;DPRA=0;EPP=9.52472;EPPR=79.0118;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=4;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=114;QR=1230;RO=35;RPL=0;RPP=9.52472;RPPR=79.0118;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=79.0118;SRR=35;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:22:2,0,5,12,3:2:72:0,5,12,3:0,55,449,114:-39.7838,-40.3858,-46.2659,-38.2898,-44.1628,-42.6577,-3.507,-9.41511,-7.39075,-5.80275,-31.0225,-36.9049,-34.8119,0,-36.0018 0|1:23:15,3,0,3,0:15:537:3,0,3,0:78,0,111,0:-4.63498,-3.03019,-45.9988,-9.15043,-46.9019,-53.0091,0,-37.8143,-43.9211,-43.0181,-9.15043,-46.9019,-53.0091,-43.9211,-53.0091 0|1:31:15,4,0,9,0:15:513:4,0,9,0:104,0,344,0:-23.7508,-20.1419,-60.5528,-28.2663,-61.757,-69.899,0,-33.5185,-41.6573,-38.948,-28.2663,-61.757,-69.899,-41.6573,-69.899 0|1:7:3,1,0,3,0:3:108:1,0,3,0:29,0,115,0:-8.60562,-7.22331,-15.7228,-9.50871,-16.0239,-18.3209,0,-6.57337,-8.86456,-7.96147,-9.50871,-16.0239,-18.3209,-8.86456,-18.3209 dDocent_Contig_12106 9 . A G 314.7 . AB=0.283019;ABP=24.6841;AC=4;AF=0.5;AN=8;AO=15;CIGAR=1X;DP=53;DPB=53;DPRA=0;EPP=35.5824;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=58.8;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=573;QR=1438;RO=38;RPL=0;RPP=35.5824;RPPR=85.5263;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:15,4:15:578:4:146:-7.77558,0,-46.6432 0/1:14:12,2:12:463:2:77:-3.09472,0,-37.8069 0/1:17:10,7:10:386:7:273:-19.7782,0,-29.9797 0/1:3:1,2:1:11:2:77:-6.40605,0,-0.196905 dDocent_Contig_12109 11 . G A 298.167 . AB=0.6;ABP=3.44459;AC=2;AF=0.25;AN=8;AO=3;CIGAR=2X1M1X;DP=54;DPB=54;DPRA=0.384615;EPP=9.52472;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=43.3333;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=121;QR=1546;RO=39;RPL=0;RPP=9.52472;RPPR=87.6977;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:5:2,0,3:2:81:0,3:0,121:-9.26005,-9.86211,-16.5493,0,-7.08367,-6.18058 0|1:23:14,9,0:14:566:9,0:340,0:-23.954,0,-44.3591,-28.1684,-47.0684,-74.8496 0|0:24:21,2,0:21:818:2,0:82,0:0,-4.69549,-71.4078,-6.32163,-72.0099,-73.7254 0|0:2:2,0,0:2:81:0,0:0,0:0,-0.60206,-7.68573,-0.60206,-7.68573,-7.68573 dDocent_Contig_12110 58 . C T 409.772 . AB=0.306452;ABP=23.184;AC=4;AF=0.5;AN=8;AO=19;CIGAR=1X;DP=62;DPB=62;DPRA=0;EPP=44.2683;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.842105;PAIREDR=0.97619;PAO=0;PQA=0;PQR=0;PRO=0;QA=727;QR=1670;RO=42;RPL=19;RPP=44.2683;RPPR=94.2121;RPR=0;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:13,2:13:519:2:75:-2.40513,0,-42.4069 0/1:5:3,2:3:108:2:78:-5.89832,0,-8.56691 0/1:24:18,6:18:725:6:219:-12.8377,0,-58.3503 0/1:17:8,9:8:318:9:355:-27.1932,0,-23.8668 dDocent_Contig_12112 134 . T G 164.343 . AB=0.333333;ABP=8.80089;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=26;DPB=26;DPRA=6;EPP=20.3821;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=294;QR=714;RO=18;RPL=0;RPP=20.3821;RPPR=42.0968;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=42.0968;SRR=18;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:7:5,2:5:198:2:74:-4.91867,0,-16.0893 0/1:17:11,6:11:435:6:220:-15.038,0,-34.3875 0/0:2:2,0:2:81:0:0:0,-0.60206,-7.68573 ./.:.:.:.:.:.:.:. dDocent_Contig_12113 23 . G C 266.35 . AB=0.642857;ABP=5.49198;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=36;DPB=36;DPRA=1.27273;EPP=22.5536;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=359;QR=1026;RO=27;RPL=0;RPP=22.5536;RPPR=61.6401;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:14:14,0:14:547:0:0:0,-4.21442,-49.5696 0/1:14:5,9:5:167:9:359:-28.4589,0,-11.1387 0/0:8:8,0:8:312:0:0:0,-2.40824,-28.4418 ./.:.:.:.:.:.:.:. dDocent_Contig_12114 40 . C A 103.492 . AB=0.363636;ABP=4.78696;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=45;DPB=45;DPRA=0.970588;EPP=11.6962;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.682927;PAO=0;PQA=0;PQR=0;PRO=0;QA=163;QR=1645;RO=41;RPL=0;RPP=11.6962;RPPR=92.0407;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:7,4:7:279:4:163:-11.7471,0,-22.1696 0/0:8:8,0:8:325:0:0:0,-2.40824,-29.6194 0/0:17:17,0:17:681:0:0:0,-5.11751,-61.6197 0/0:9:9,0:9:360:0:0:0,-2.70927,-32.7614 dDocent_Contig_12115 18 . C A 66.4625 . AB=0.14;ABP=59.2949;AC=3;AF=0.375;AN=8;AO=7;CIGAR=1X;DP=56;DPB=56;DPRA=2.77778;EPP=18.2106;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.5102;NS=4;NUMALT=1;ODDS=0;PAIRED=0.571429;PAIREDR=0.77551;PAO=0;PQA=0;PQR=0;PRO=0;QA=283;QR=1969;RO=49;RPL=0;RPP=18.2106;RPPR=109.412;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:18,2:18:732:2:81:-1.66513,0,-60.183 0/1:22:18,4:18:723:4:161:-8.25282,0,-58.7027 0/0:6:6,0:6:239:0:0:0,-1.80618,-21.8832 0/1:8:7,1:7:275:1:41:-1.68633,0,-22.7097 dDocent_Contig_12118 129 . T A 318.136 . AB=0.322581;ABP=11.486;AC=4;AF=0.5;AN=8;AO=13;CIGAR=1X1M1X;DP=50;DPB=50;DPRA=0.708333;EPP=31.2394;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=477;QR=1418;RO=37;RPL=0;RPP=31.2394;RPPR=83.3548;RPR=13;RUN=1;SAF=0;SAP=31.2394;SAR=13;SRF=0;SRP=83.3548;SRR=37;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:24:15,9:15:576:9:330:-22.8251,0,-44.9572 0|0:16:16,0:16:611:0:0:0,-4.81648,-55.3284 1|1:3:0,3:0:0:3:111:-10.3539,-0.90309,0 0|1:7:6,1:6:231:1:36:-1.49107,0,-19.0507 dDocent_Contig_12120 10 . A G 8123.27 . AB=0.500928;ABP=3.01433;AC=4;AF=0.5;AN=8;AO=270;CIGAR=2M1X3M;DP=539;DPB=539;DPRA=0;EPP=589.308;EPPR=456.848;GTI=0;LEN=1;MEANALT=6.75;MQM=60;MQMR=60;NS=4;NUMALT=5;ODDS=0;PAIRED=0.988889;PAIREDR=0.971292;PAO=0;PQA=0;PQR=0;PRO=0;QA=10722;QR=7920;RO=209;RPL=0;RPP=589.308;RPPR=456.848;RPR=270;RUN=1;SAF=270;SAP=589.308;SAR=0;SRF=209;SRP=456.848;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:252:91,1,3,3,131,9:91:3437:1,3,3,131,9:37,119,117,5226,358:-402.992,-427.359,-708.757,-420.59,-699.262,-701.386,-420.768,-699.44,-692.671,-701.564,0,-278.672,-271.903,-272.081,-242.264,-400.91,-679.582,-672.812,-672.991,-252.222,-679.899 0|1:234:98,1,5,2,115,1:98:3716:1,5,2,115,1:39,194,78,4540,40:-344.042,-370.337,-674.711,-357.605,-659.074,-660.775,-367.132,-668.6,-655.868,-671.204,0,-301.469,-288.736,-298.263,-270.056,-370.248,-671.717,-658.985,-668.511,-301.38,-674.622 0|1:37:10,2,2,0,21,2:10:385:2,2,0,21,2:78,78,0,845,81:-66.6357,-63.2351,-94.2394,-63.2351,-88.4302,-94.2394,-69.646,-94.8415,-94.8415,-101.253,0,-25.193,-25.193,-31.6049,-25.2833,-62.9665,-88.1618,-88.1618,-94.5732,-24.9234,-93.9712 0|1:16:10,0,0,2,3,1:10:382:0,0,2,3,1:0,0,77,111,41:-6.05486,-9.06516,-40.4075,-9.06516,-40.4075,-40.4075,-2.74107,-34.0846,-34.0846,-33.4826,0,-31.3334,-31.3334,-25.0109,-30.4303,-5.67545,-37.0215,-37.0215,-30.6984,-27.9472,-36.7205 dDocent_Contig_12121 24 . T C 453.957 . AB=0.481481;ABP=3.09072;AC=3;AF=0.375;AN=8;AO=15;CIGAR=1X;DP=96;DPB=96;DPRA=0.432836;EPP=35.5824;EPPR=178.9;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=602;QR=3253;RO=81;RPL=0;RPP=35.5824;RPPR=178.9;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=81;SRP=178.9;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:59:59,0:59:2362:0:0:0,-17.7608,-212.726 0/1:27:14,13:14:565:13:520:-39.0137,0,-43.0635 0/0:8:8,0:8:326:0:0:0,-2.40824,-29.7097 1/1:2:0,2:0:0:2:82:-7.77968,-0.60206,0 dDocent_Contig_12124 115 . C T 36.3799 . AB=0.162162;ABP=39.6906;AC=2;AF=0.25;AN=8;AO=6;CIGAR=1X;DP=69;DPB=69;DPRA=1.15625;EPP=16.0391;EPPR=139.813;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=194;QR=2157;RO=63;RPL=0;RPP=16.0391;RPPR=139.813;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=139.813;SRR=63;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9449 0/0:28:28,0:28:946:0:0:0,-8.42884,-85.4459 0/1:33:28,5:28:967:5:159:-4.68919,0,-77.4096 0/1:4:3,1:3:104:1:35:-2.29451,0,-8.49897 dDocent_Contig_12125 41 . T C 1114.47 . AB=0;ABP=0;AC=2;AF=0.333333;AN=6;AO=31;CIGAR=1X;DP=56;DPB=56;DPRA=2.48;EPP=70.3259;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1230;QR=997;RO=25;RPL=0;RPP=70.3259;RPPR=57.2971;RPR=31;RUN=1;SAF=31;SAP=70.3259;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:31:0,31:0:0:31:1230:-110.97,-9.33193,0 0/0:16:16,0:16:635:0:0:0,-4.81648,-57.4846 0/0:9:9,0:9:362:0:0:0,-2.70927,-32.9442 ./.:.:.:.:.:.:.:. dDocent_Contig_12126 117 . A T 257.482 . AB=0.625;ABP=6.26751;AC=3;AF=0.375;AN=8;AO=15;CIGAR=1X;DP=30;DPB=30;DPRA=1.33333;EPP=35.5824;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=411;QR=490;RO=15;RPL=0;RPP=35.5824;RPPR=35.5824;RPR=15;RUN=1;SAF=0;SAP=35.5824;SAR=15;SRF=0;SRP=35.5824;SRR=15;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:5,7:5:166:7:179:-12.7484,0,-11.6544 0/1:10:3,7:3:104:7:212:-16.3673,0,-6.69279 0/0:6:6,0:6:186:0:0:0,-1.80618,-17.0452 0/1:2:1,1:1:34:1:20:-1.3979,0,-2.79685 dDocent_Contig_12127 107 . N C 145.704 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=5;CIGAR=1X2M1X;DP=5;DPB=5;DPRA=0;EPP=13.8677;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=31;MQMR=0;NS=3;NUMALT=1;ODDS=1.69407e-21;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=172;QR=0;RO=0;RPL=0;RPP=13.8677;RPPR=0;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:1:0,1:0:0:1:34:-2.92368,-0.30103,0 1|1:3:0,3:0:0:3:104:-8.24394,-0.90309,0 1|1:1:0,1:0:0:1:34:-2.92368,-0.30103,0 .:.:.:.:.:.:.:. dDocent_Contig_12129 75 . T G 286.977 . AB=0.285714;ABP=5.80219;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X3M1X;DP=41;DPB=41;DPRA=0.608696;EPP=7.35324;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=21;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=69;QR=943;RO=28;RPL=2;RPP=7.35324;RPPR=63.8115;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:9:0,0,9:0:0:0,9:0,311:-28.3252,-28.3252,-28.3252,-2.70927,-2.70927,0 0|1:7:5,2,0:5:172:2,0:69,0:-1.84679,0,-13.7111,-3.35194,-14.3132,-17.4182 0|0:14:13,0,0:13:432:0,0:0,0:0,-3.91339,-38.8875,-3.91339,-38.8875,-38.8875 0|0:11:10,0,1:10:339:0,1:0,34:-0.0875811,-3.09788,-30.5857,0,-27.8276,-27.5266 dDocent_Contig_12130 47 . T G 171.667 . AB=0.478261;ABP=3.10471;AC=3;AF=0.375;AN=8;AO=11;CIGAR=1X;DP=52;DPB=52;DPRA=0.264368;EPP=26.8965;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=318;QR=1504;RO=41;RPL=0;RPP=26.8965;RPPR=92.0407;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:4,6:4:149:6:167:-12.2905,0,-10.7632 0/0:29:29,0:29:1059:0:0:0,-8.72987,-95.6074 0/1:8:5,3:5:182:3:92:-6.17553,0,-14.3256 0/1:5:3,2:3:114:2:59:-4.09772,0,-9.12707 dDocent_Contig_12131 29 . T C 738.323 . AB=0.264706;ABP=35.7101;AC=5;AF=0.625;AN=8;AO=32;CIGAR=1M1X1M;DP=83;DPB=93.6667;DPRA=0;EPP=72.4974;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1.75;MQM=37.7812;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1199;QR=1722;RO=43;RPL=0;RPP=72.4974;RPPR=96.3836;RPR=32;RUN=1;SAF=32;SAP=72.4974;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:28:25,0,3:25:998:0,3:0,111:-1.20467,-8.73042,-90.9749,0,-82.5944,-81.6913 0|1:29:10,6,13:10:405:6,13:201,494:-34.025,-20.7706,-52.3838,0,-17.1958,-29.5258 0|1:11:7,1,2:7:281:1,2:40,69:-2.91426,-1.7131,-24.6046,0,-19.8568,-22.5496 1|1:15:1,0,14:1:38:0,14:0,525:-40.2592,-40.5602,-43.6789,-0.718181,-4.21442,0 dDocent_Contig_12132 162 . T G 293.64 . AB=0.391304;ABP=5.3706;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X1M5D1M;DP=49;DPB=42.625;DPRA=2.09091;EPP=22.5536;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=368;QR=1466;RO=37;RPL=9;RPP=22.5536;RPPR=83.3548;RPR=0;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=83.3548;SRR=37;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:21:20,0,1:20:787:0,1:0,38:0,-6.0206,-70.7719,-2.52436,-67.656,-67.355 0|1:23:14,9,0:14:558:9,0:368,0:-26.5617,0,-43.6414,-30.7761,-46.3507,-76.7224 0|0:1:1,0,0:1:40:0,0:0,0:0,-0.30103,-3.99568,-0.30103,-3.99568,-3.99568 0|0:4:2,0,2:2:81:0,2:0,78:-6.19918,-6.80124,-13.4878,0,-7.08367,-6.48161 dDocent_Contig_12133 106 . N T 385.646 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=13;CIGAR=2X;DP=13;DPB=13;DPRA=0;EPP=31.2394;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=13.6161;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=425;QR=0;RO=0;RPL=0;RPP=31.2394;RPPR=0;RPR=13;RUN=1;SAF=0;SAP=31.2394;SAR=13;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:13:0,13:0:0:13:425:-38.5646,-3.91339,0 .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. dDocent_Contig_12134 166 . G A 35.7919 . AB=0.25;ABP=7.35324;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X;DP=36;DPB=36;DPRA=0.857143;EPP=7.35324;EPPR=46.1843;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=1353;RO=34;RPL=2;RPP=7.35324;RPPR=46.1843;RPR=0;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=76.8404;SRR=34;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:8:8,0:8:307:0:0:0,-2.40824,-27.989 0/0:1:1,0:1:41:0:0:0,-0.30103,-4.09457 0/0:19:19,0:19:763:0:0:0,-5.71957,-68.9886 0/1:8:6,2:6:242:2:81:-5.27749,0,-19.7489 dDocent_Contig_12135 203 . A C 115.627 . AB=0.1875;ABP=16.582;AC=5;AF=0.625;AN=8;AO=3;CIGAR=1X2M;DP=34;DPB=34;DPRA=2.66667;EPP=9.52472;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=105;QR=822;RO=24;RPL=3;RPP=9.52472;RPPR=55.1256;RPR=0;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=55.1256;SRR=24;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:3:0,3,0:0:0:3,0:99,0:-9.23758,-0.90309,0,-9.23758,-0.90309,-9.23758 0|1:15:13,2,0:13:458:2,0:66,0:-1.75291,0,-37.038,-5.6663,-37.6401,-42.9735 0|1:13:9,2,2:9:294:2,2:67,70:-2.99368,-0.284252,-23.4046,0,-18.307,-23.1326 0|1:3:2,0,1:2:70:0,1:0,35:-2.59554,-3.1976,-8.893,0,-6.04527,-5.74424 dDocent_Contig_12137 36 . A G 232.715 . AB=0.285714;ABP=16.9698;AC=2;AF=0.25;AN=8;AO=10;CIGAR=1X;DP=57;DPB=57;DPRA=1.59091;EPP=24.725;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=54.6;MQMR=58.2766;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=0.4;PAIREDR=0.702128;PAO=0;PQA=0;PQR=0;PRO=0;QA=407;QR=1864;RO=47;RPL=0;RPP=24.725;RPPR=105.07;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:10,6:10:399:6:245:-17.4217,0,-31.1384 0/1:19:15,4:15:600:4:162:-9.24718,0,-48.5101 0/0:21:21,0:21:824:0:0:0,-6.32163,-74.4363 0/0:1:1,0:1:41:0:0:0,-0.30103,-4.09457 dDocent_Contig_12138 16 . A G 55.7795 . AB=0.16;ABP=28.1125;AC=2;AF=0.25;AN=8;AO=4;CIGAR=1X;DP=70;DPB=70;DPRA=0.555556;EPP=11.6962;EPPR=146.327;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=160;QR=2648;RO=66;RPL=0;RPP=11.6962;RPPR=146.327;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=66;SRP=146.327;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:30:30,0:30:1213:0:0:0,-9.0309,-109.443 0/0:15:15,0:15:597:0:0:0,-4.51545,-54.0669 0/1:12:11,1:11:442:1:40:-0.383319,0,-36.5234 0/1:13:10,3:10:396:3:120:-7.2743,0,-32.0851 dDocent_Contig_12139 37 . G T 208.739 . AB=0.263158;ABP=21.525;AC=3;AF=0.375;AN=8;AO=10;CIGAR=1X;DP=45;DPB=45;DPRA=1.80952;EPP=24.725;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=406;QR=1354;RO=35;RPL=0;RPP=24.725;RPPR=79.0118;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:7:7,0:7:272:0:0:0,-2.10721,-24.8414 0/1:19:16,3:16:621:3:121:-5.56042,0,-50.4925 0/1:7:4,3:4:162:3:122:-9.26528,0,-12.8597 0/1:12:8,4:8:299:4:163:-11.4461,0,-23.6459 dDocent_Contig_12140 11 . T C 57.019 . AB=0.2;ABP=18.6449;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=50;DPB=50;DPRA=2;EPP=11.6962;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=0.76087;PAO=0;PQA=0;PQR=0;PRO=0;QA=142;QR=1859;RO=46;RPL=0;RPP=11.6962;RPPR=102.898;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:16,4:16:655:4:142:-7.09929,0,-53.261 0/0:12:12,0:12:483:0:0:0,-3.61236,-43.8201 0/0:17:17,0:17:680:0:0:0,-5.11751,-61.5279 0/0:1:1,0:1:41:0:0:0,-0.30103,-4.09457 dDocent_Contig_12141 95 . C A 57.3518 . AB=0.222222;ABP=15.074;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=126;DPB=126;DPRA=0.5;EPP=11.6962;EPPR=267.93;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.991803;PAO=0;PQA=0;PQR=0;PRO=0;QA=139;QR=4156;RO=122;RPL=4;RPP=11.6962;RPPR=267.93;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=122;SRP=267.93;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:49:49,0:49:1652:0:0:0,-14.7505,-148.965 0/0:31:31,0:31:1079:0:0:0,-9.33193,-97.4212 0/0:28:28,0:28:953:0:0:0,-8.42884,-86.0808 0/1:18:14,4:14:472:4:139:-7.43415,0,-37.3842 dDocent_Contig_12142 15 . T C 3345.96 . AB=0.393333;ABP=32.6581;AC=4;AF=0.5;AN=8;AO=118;CIGAR=1X1M;DP=300;DPB=300;DPRA=0;EPP=259.244;EPPR=308.096;GTI=0;LEN=1;MEANALT=1.75;MQM=60;MQMR=59.9825;NS=4;NUMALT=2;ODDS=0;PAIRED=0.940678;PAIREDR=0.865497;PAO=0;PQA=0;PQR=0;PRO=0;QA=4768;QR=6864;RO=171;RPL=0;RPP=259.244;RPPR=374.332;RPR=118;RUN=1;SAF=118;SAP=259.244;SAR=0;SRF=163;SRP=308.096;SRR=8;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:106:58,7,41:58:2330:7,41:276,1662:-119.602,-114.359,-304.244,0,-169.297,-179.659 0|1:75:35,1,39:35:1406:1,39:41,1586:-120.28,-127.432,-242.976,0,-112.456,-104.1 0|1:66:41,0,25:41:1627:0,25:0,992:-69.7049,-82.0471,-215.972,0,-134.321,-126.795 0|1:53:37,3,13:37:1501:3,13:123,528:-32.4066,-33.3918,-156.274,0,-113.629,-119.868 dDocent_Contig_12143 29 . C T 98.2587 . AB=0.444444;ABP=3.25157;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=37;DPB=37;DPRA=1.64286;EPP=13.8677;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=192;QR=1228;RO=32;RPL=0;RPP=13.8677;RPPR=72.4974;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:12:12,0:12:472:0:0:0,-3.61236,-42.8285 0/1:9:5,4:5:194:4:154:-11.5242,0,-15.1222 0/0:14:13,1:13:489:1:38:0,-0.417151,-40.5525 0/0:2:2,0:2:73:0:0:0,-0.60206,-6.9311 dDocent_Contig_12144 10 . T C 701.275 . AB=0.296703;ABP=35.6778;AC=6;AF=0.75;AN=8;AO=27;CIGAR=1X1M1X7M;DP=91;DPB=87.4;DPRA=0;EPP=61.6401;EPPR=115.927;GTI=0;LEN=1;MEANALT=2;MQM=48.5185;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.185185;PAIREDR=0.865385;PAO=0;PQA=0;PQR=0;PRO=0;QA=980;QR=2027;RO=52;RPL=0;RPP=61.6401;RPPR=115.927;RPR=27;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:27:4,5,18:4:156:5,18:199,697:-58.0726,-42.8862,-54.2066,-3.57079,0,-10.9721 0|1:28:24,3,1:24:946:3,1:116,41:-0.905439,0,-76.9129,-4.72786,-74.4312,-82.3087 0|1:28:23,3,2:23:886:3,2:121,57:-3.13927,0,-71.9603,-6.13401,-68.8857,-78.26 1|1:8:1,1,6:1:39:1,6:41,185:-13.8234,-10.7238,-13.6424,-0.198003,0,-1.5878 dDocent_Contig_12145 71 . G T 86.2793 . AB=0.444444;ABP=3.25157;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=48;DPB=48;DPRA=0.692308;EPP=11.6962;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=141;QR=1607;RO=44;RPL=4;RPP=11.6962;RPPR=98.5551;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:29:29,0:29:1085:0:0:0,-8.72987,-97.9476 0/0:6:6,0:6:226:0:0:0,-1.80618,-20.7014 0/1:9:5,4:5:183:4:141:-10.3268,0,-14.1156 0/0:4:4,0:4:113:0:0:0,-1.20412,-10.4477 dDocent_Contig_12146 107 . N A 55.4724 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=5;CIGAR=2X2M1X2M1X3M5I6M;DP=5;DPB=6.47059;DPRA=0;EPP=13.8677;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=15;MQMR=0;NS=1;NUMALT=1;ODDS=8.07091;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=75;QR=0;RO=0;RPL=0;RPP=13.8677;RPPR=0;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. 1|1:5:0,5:0:0:5:75:-5.5471,-1.50515,0 .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. dDocent_Contig_12148 50 . T C 1230.81 . AB=0.494253;ABP=3.03526;AC=4;AF=0.5;AN=8;AO=43;CIGAR=1X;DP=87;DPB=87;DPRA=0;EPP=96.3836;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.976744;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1725;QR=1766;RO=44;RPL=43;RPP=96.3836;RPPR=98.5551;RPR=0;RUN=1;SAF=43;SAP=96.3836;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:17,19:17:679:19:757:-57.6159,0,-50.6023 0/1:40:22,18:22:885:18:727:-53.7134,0,-67.9169 0/1:5:3,2:3:122:2:78:-5.89763,0,-9.86734 0/1:6:2,4:2:80:4:163:-13.2522,0,-5.78539 dDocent_Contig_12151 76 . C T 136.065 . AB=0;ABP=0;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1X;DP=19;DPB=19;DPRA=0.533333;EPP=11.6962;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.69407e-21;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=142;QR=527;RO=15;RPL=4;RPP=11.6962;RPPR=35.5824;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=15;SRP=35.5824;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:4:0,4:0:0:4:142:-13.1293,-1.20412,0 0/0:7:7,0:7:250:0:0:0,-2.10721,-22.8468 0/0:8:8,0:8:277:0:0:0,-2.40824,-25.2661 dDocent_Contig_12152 56 . A G 1454.1 . AB=0.465909;ABP=3.89863;AC=6;AF=0.75;AN=8;AO=41;CIGAR=12M1X3M;DP=88;DPB=88.875;DPRA=0;EPP=92.0407;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1.75;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=6.93889e-18;PAIRED=0.804878;PAIREDR=0.757576;PAO=0;PQA=0;PQR=0;PRO=0;QA=1607;QR=1279;RO=33;RPL=41;RPP=92.0407;RPPR=74.6689;RPR=0;RUN=1;SAF=41;SAP=92.0407;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:25:7,2,16:7:277:2,16:64,629:-49.6897,-46.6492,-68.8459,0,-17.7176,-18.0402 0|1:31:25,0,6:25:965:0,6:0,227:-11.4588,-18.9846,-98.24,0,-79.635,-77.8288 1|1:18:0,8,10:0:0:8,10:293,389:-56.2876,-32.3504,-29.9421,-24.3133,0,-21.303 1|1:14:1,4,9:1:37:4,9:112,362:-35.3715,-26.8381,-28.6578,-5.75495,0,-6.09068 dDocent_Contig_12155 42 . G A 631.136 . AB=0.06;ABP=87.0897;AC=2;AF=0.25;AN=8;AO=3;CIGAR=1M4I9M1X9M1X;DP=76;DPB=83.0952;DPRA=0;EPP=9.52472;EPPR=52.9542;GTI=0;LEN=1;MEANALT=9;MQM=60;MQMR=60;NS=4;NUMALT=5;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=88;QR=890;RO=23;RPL=0;RPP=9.52472;RPPR=52.9542;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:17:0,2,0,0,10,0:0:0:2,0,0,10,0:74,0,0,361,0:-35.609,-29.5487,-28.9466,-35.609,-29.5487,-35.609,-35.609,-29.5487,-35.609,-35.609,-6.09513,0,-6.09513,-6.09513,-3.08483,-35.609,-29.5487,-35.609,-35.609,-6.09513,-35.609 0|0:22:9,0,0,2,4,3:9:354:0,0,2,4,3:0,0,57,149,94:-9.5287,-12.238,-41.4032,-12.238,-41.4032,-41.4032,-7.70975,-36.8801,-36.8801,-36.278,0,-29.1961,-29.1961,-24.6726,-27.992,-4.67655,-33.8538,-33.8538,-29.3316,-21.6452,-32.9507 0|0:28:13,0,2,1,4,1:13:496:0,2,1,4,1:0,61,31,139,38:-7.40245,-11.3158,-52.0405,-6.42836,-47.1561,-46.554,-8.82679,-49.5531,-44.6688,-49.252,0,-40.7397,-35.8556,-38.2524,-39.5356,-8.19377,-48.9224,-44.038,-46.435,-37.6214,-48.6214 1|0:9:1,0,2,0,5,0:1:40:0,2,0,5,0:0,69,0,193,0:-17.9612,-18.2622,-21.5644,-12.6536,-15.9581,-15.3561,-18.2622,-21.5644,-15.9581,-21.5644,-2.32911,-5.66077,0,-5.66077,-4.15562,-18.2622,-21.5644,-15.9581,-21.5644,-5.66077,-21.5644 dDocent_Contig_12156 7 . T C 90.7303 . AB=0;ABP=0;AC=2;AF=0.25;AN=8;AO=4;CIGAR=1X;DP=21;DPB=21;DPRA=0.705882;EPP=11.6962;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=23;MQMR=60;NS=4;NUMALT=1;ODDS=3.38813e-21;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=156;QR=659;RO=17;RPL=0;RPP=11.6962;RPPR=39.9253;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:4:0,4:0:0:4:156:-8.47033,-1.20412,0 0/0:9:9,0:9:349:0:0:0,-2.70927,-31.7709 0/0:1:1,0:1:39:0:0:0,-0.30103,-3.89656 0/0:7:7,0:7:271:0:0:0,-2.10721,-24.7563 dDocent_Contig_12159 15 . T C 308.875 . AB=0.0588235;ABP=60.4905;AC=2;AF=0.25;AN=8;AO=2;CIGAR=2X3M;DP=126;DPB=126;DPRA=0.971429;EPP=7.35324;EPPR=188.961;GTI=0;LEN=1;MEANALT=3;MQM=16;MQMR=55.9802;NS=4;NUMALT=3;ODDS=6.93889e-18;PAIRED=0;PAIREDR=0.465347;PAO=0;PQA=0;PQR=0;PRO=0;QA=32;QR=4001;RO=101;RPL=0;RPP=7.35324;RPPR=222.329;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=97;SRP=188.961;SRR=4;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:57:53,0,4,0:53:2098:0,4,0:0,149,0:0,-15.9546,-179.394,-5.89979,-169.649,-168.445,-15.9546,-179.394,-169.649,-179.394 0|1:34:22,0,9,2:22:877:0,9,2:0,361,32:-20.5277,-27.1504,-99.4115,0,-72.3716,-69.6624,-25.4446,-97.6808,-70.6471,-97.0787 0|1:22:13,2,7,0:13:514:2,7,0:82,266,0:-13.7577,-10.9325,-52.6825,0,-35.5703,-40.1828,-17.6711,-53.2846,-42.29,-60.0064 0|0:13:13,0,0,0:13:512:0,0,0:0,0,0:0,-3.91339,-41.7759,-3.91339,-41.7759,-41.7759,-3.91339,-41.7759,-41.7759,-41.7759 dDocent_Contig_12161 66 . G A 201.237 . AB=0.25;ABP=9.52472;AC=3;AF=0.375;AN=8;AO=8;CIGAR=1X;DP=70;DPB=70;DPRA=0.777778;EPP=20.3821;EPPR=137.642;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=312;QR=2455;RO=62;RPL=8;RPP=20.3821;RPPR=137.642;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:21:21,0:21:819:0:0:0,-6.32163,-74.0248 0/1:12:9,3:9:359:3:109:-6.55458,0,-29.0606 1/1:4:0,4:0:0:4:162:-14.967,-1.20412,0 0/0:33:32,1:32:1277:1:41:0,-5.83942,-111.105 dDocent_Contig_12162 62 . G A 427.942 . AB=0.121951;ABP=104.805;AC=0;AF=0;AN=8;AO=10;CIGAR=1X2M1X;DP=105;DPB=105;DPRA=0;EPP=16.9077;EPPR=141.985;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.7;PAIREDR=0.984375;PAO=0;PQA=0;PQR=0;PRO=0;QA=342;QR=2128;RO=64;RPL=10;RPP=24.725;RPPR=141.985;RPR=0;RUN=1;SAF=9;SAP=16.9077;SAR=1;SRF=64;SRP=141.985;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:24:17,3,4:17:554:3,4:102,119:-4.362,-1.18735,-45.0335,0,-36.4382,-43.5102 0|0:32:21,4,7:21:704:4,7:140,199:-9.43685,-4.34518,-60.1966,0,-45.6132,-54.8978 0|0:23:11,0,12:11:376:0,12:0,350:-24.8606,-28.172,-58.7127,0,-30.8585,-27.2461 0|0:26:15,3,7:15:494:3,7:100,202:-11.5251,-7.93547,-46.9857,0,-31.8327,-37.8204 dDocent_Contig_12163 36 . G T 296.53 . AB=0.25;ABP=33.4109;AC=3;AF=0.375;AN=8;AO=16;CIGAR=1X;DP=97;DPB=97;DPRA=0;EPP=37.7539;EPPR=176.728;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=643;QR=3171;RO=80;RPL=0;RPP=37.7539;RPPR=176.728;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=80;SRP=176.728;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:41:38,2:38:1509:2:79:0,-4.72844,-128.657 0/1:11:6,5:6:242:5:204:-15.4327,0,-18.8462 0/1:25:22,3:22:863:3:119:-3.56964,0,-70.455 0/1:20:14,6:14:557:6:241:-16.0457,0,-44.4488 dDocent_Contig_12165 40 . C A 628.041 . AB=0.46;ABP=3.70517;AC=2;AF=0.25;AN=8;AO=23;CIGAR=1X2M1X2M2D4M1X7M;DP=65;DPB=62.7;DPRA=3.33333;EPP=52.9542;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=895;QR=1662;RO=42;RPL=0;RPP=52.9542;RPPR=94.2121;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:13:13,0:13:511:0:0:0,-3.91339,-46.3381 0|1:38:25,13:25:991:13:500:-33.9042,0,-78.0561 0|0:2:2,0:2:80:0:0:0,-0.60206,-7.59179 0|1:12:2,10:2:80:10:395:-32.2965,0,-3.97943 dDocent_Contig_12167 34 . G A 2333.84 . AB=0.374332;ABP=28.6615;AC=3;AF=0.375;AN=8;AO=70;CIGAR=1X2M1X3M;DP=187;DPB=187;DPRA=0;EPP=155.013;EPPR=98.5551;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=4;NUMALT=4;ODDS=0;PAIRED=0.871429;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2724;QR=1672;RO=44;RPL=0;RPP=155.013;RPPR=98.5551;RPR=70;RUN=1;SAF=70;SAP=155.013;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:71:15,40,0,11,3:15:571:40,0,11,3:1564,0,424,123:-124.073,0,-34.7892,-128.589,-46.8304,-175.42,-93.7796,-12.0196,-140.61,-137.299,-118.435,-36.6754,-165.267,-130.457,-164.364 1|0:45:11,12,7,3,12:11:432:12,7,3,12:459,266,121,487:-38.9874,-4.63932,-36.5571,-20.4874,-18.3593,-53.9111,-32.3236,-30.1947,-46.0436,-66.9526,-2.12747,0,-15.8494,-27.6862,-34.0495 1|0:48:13,14,1,13,7:13:474:14,1,13,7:548,40,526,283:-45.8203,-4.68114,-39.1646,-46.4386,-40.0836,-84.841,-6.36099,0,-41.7668,-41.149,-26.4004,-20.0431,-61.8075,-21.7254,-62.9957 0|0:23:5,4,3,10,1:5:195:4,3,10,1:153,116,405,41:-31.9003,-20.8551,-35.6765,-23.88,-27.3552,-39.0031,0,-3.47755,-6.50245,-13.0192,-30.0206,-33.4959,-36.5214,-12.6436,-45.7467 dDocent_Contig_12168 136 . C T 30.2652 . AB=0.142857;ABP=34.0313;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=53;DPB=53;DPRA=6.57143;EPP=13.8677;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=50.6;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.8;PAIREDR=0.895833;PAO=0;PQA=0;PQR=0;PRO=0;QA=176;QR=1672;RO=48;RPL=0;RPP=13.8677;RPPR=107.241;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=107.241;SRR=48;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:24,4:24:844:4:139:-4.42385,0,-67.8497 0/0:18:17,1:17:589:1:37:0,-4.12018,-52.0378 0/0:3:3,0:3:104:0:0:0,-0.90309,-9.70309 0/0:4:4,0:4:135:0:0:0,-1.20412,-12.4836 dDocent_Contig_12169 9 . T A 856.203 . AB=0;ABP=0;AC=0;AF=0;AN=8;AO=4;CIGAR=1X3M1X;DP=136;DPB=136;DPRA=0;EPP=11.6962;EPPR=209.3;GTI=0;LEN=1;MEANALT=2;MQM=36;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=160;QR=3734;RO=95;RPL=0;RPP=11.6962;RPPR=209.3;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=95;SRP=209.3;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:47:33,0,14:33:1306:0,14:0,571:-33.4134,-43.3473,-150.85,0,-107.883,-103.669 0|0:48:41,4,3:41:1605:4,3:160,123:0,-1.13507,-131.903,-2.72381,-123.507,-133.832 0|0:23:7,0,16:7:269:0,16:0,651:-48.7931,-50.9003,-72.9812,0,-22.465,-17.6485 0|0:18:14,0,4:14:554:0,4:0,154:-8.81178,-13.0262,-58.6298,0,-45.9906,-44.7865 dDocent_Contig_12172 7 . T C 140.089 . AB=0.25;ABP=7.35324;AC=3;AF=0.5;AN=6;AO=5;CIGAR=1X;DP=17;DPB=17;DPRA=0.916667;EPP=13.8677;EPPR=29.068;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=191;QR=461;RO=12;RPL=0;RPP=13.8677;RPPR=29.068;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=12;SRP=29.068;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:6:6,0:6:232:0:0:0,-1.80618,-21.2489 1/1:3:0,3:0:0:3:115:-10.7249,-0.90309,0 0/1:8:6,2:6:229:2:76:-4.80643,0,-18.5671 ./.:.:.:.:.:.:.:. dDocent_Contig_12173 78 . C A 526.577 . AB=0.4375;ABP=4.6389;AC=5;AF=0.625;AN=8;AO=22;CIGAR=1X1M1X;DP=49;DPB=49;DPRA=0;EPP=50.7827;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.954545;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=790;QR=961;RO=27;RPL=22;RPP=50.7827;RPPR=61.6401;RPR=0;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:11:6,5:6:219:5:180:-13.2403,0,-16.7529 0|1:22:12,10:12:423:10:352:-25.3939,0,-31.7804 0|1:15:9,6:9:319:6:222:-15.8226,0,-24.5349 1|1:1:0,1:0:0:1:36:-3.59827,-0.30103,0 dDocent_Contig_12174 53 . G A 563.038 . AB=0.214286;ABP=12.937;AC=3;AF=0.375;AN=8;AO=17;CIGAR=1X;DP=35;DPB=35;DPRA=4;EPP=39.9253;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.944444;PAO=0;PQA=0;PQR=0;PRO=0;QA=680;QR=720;RO=18;RPL=17;RPP=39.9253;RPPR=42.0968;RPR=0;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:11,3:11:435:3:115:-6.50796,0,-35.2893 0/0:1:1,0:1:41:0:0:0,-0.30103,-4.09457 1/1:14:0,14:0:0:14:565:-51.1932,-4.21442,0 0/0:6:6,0:6:244:0:0:0,-1.80618,-22.3386 dDocent_Contig_12175 113 . A G 176.193 . AB=0.384615;ABP=4.51363;AC=3;AF=0.375;AN=8;AO=7;CIGAR=2X;DP=23;DPB=23;DPRA=1.875;EPP=18.2106;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=247;QR=568;RO=16;RPL=0;RPP=18.2106;RPPR=37.7539;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=37.7539;SRR=16;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:2:2,0:2:72:0:0:0,-0.60206,-6.83672 0|1:13:8,5:8:287:5:175:-12.18,0,-22.2631 0|0:6:6,0:6:209:0:0:0,-1.80618,-19.1504 1|1:2:0,2:0:0:2:72:-6.83672,-0.60206,0 dDocent_Contig_12176 28 . A G 429.562 . AB=0.349206;ABP=15.4532;AC=4;AF=0.5;AN=8;AO=22;CIGAR=1X;DP=63;DPB=63;DPRA=0;EPP=50.7827;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=46.7273;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=0.636364;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=874;QR=1644;RO=41;RPL=0;RPP=50.7827;RPPR=92.0407;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:7,7:7:269:7:285:-15.7578,0,-20.3534 0/1:24:18,6:18:728:6:226:-11.6336,0,-58.6194 0/1:18:12,6:12:491:6:240:-13.6052,0,-39.1224 0/1:7:4,3:4:156:3:123:-9.35758,0,-12.3069 dDocent_Contig_12177 120 . A G 273.872 . AB=0.487179;ABP=3.06598;AC=4;AF=0.666667;AN=6;AO=22;CIGAR=1X1M;DP=42;DPB=42;DPRA=0;EPP=42.4916;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1.33333;MQM=33.1818;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.363636;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=502;QR=597;RO=18;RPL=0;RPP=50.7827;RPPR=42.0968;RPR=22;RUN=1;SAF=1;SAP=42.4916;SAR=21;SRF=0;SRP=42.0968;SRR=18;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:14:9,0,5:9:305:0,5:0,88:-2.51487,-5.22414,-30.0795,0,-25.0704,-23.5653 0|1:25:9,2,14:9:292:2,14:69,312:-18.836,-20.3628,-43.37,0,-22.591,-19.5312 .:.:.:.:.:.:.:. 1|1:3:0,0,3:0:0:0,3:0,102:-9.5168,-9.5168,-9.5168,-0.90309,-0.90309,0 dDocent_Contig_12178 48 . T C 98.4255 . AB=0.0833333;ABP=39.2015;AC=0;AF=0;AN=8;AO=2;CIGAR=1X1M1X;DP=58;DPB=58;DPRA=1.77778;EPP=7.35324;EPPR=87.0897;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=3.46945e-18;PAIRED=0;PAIREDR=0.74;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=1983;RO=50;RPL=0;RPP=7.35324;RPPR=87.0897;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:20:20,0,0:20:790:0,0:0,0:0,-6.0206,-71.4173,-6.0206,-71.4173,-71.4173 0|0:24:19,2,3:19:757:2,3:82,120:-4.15916,-3.1066,-64.8405,0,-55.5577,-61.4238 0|0:7:4,0,3:4:160:0,3:0,120:-9.08048,-10.2846,-23.4643,0,-13.5793,-12.6762 0|0:7:7,0,0:7:276:0,0:0,0:0,-2.10721,-25.2065,-2.10721,-25.2065,-25.2065 dDocent_Contig_12179 8 . C T 354.475 . AB=0.18254;ABP=113.307;AC=4;AF=0.5;AN=8;AO=23;CIGAR=1X;DP=126;DPB=126;DPRA=0;EPP=52.9542;EPPR=226.672;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.304348;PAIREDR=0.601942;PAO=0;PQA=0;PQR=0;PRO=0;QA=876;QR=3967;RO=103;RPL=0;RPP=52.9542;RPPR=226.672;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=103;SRP=226.672;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:34:30,4:30:1143:4:154:-3.99844,0,-92.9325 0/1:32:21,11:21:814:11:412:-27.7951,0,-63.9519 0/1:31:28,3:28:1081:3:117:-1.57845,0,-88.2612 0/1:29:24,5:24:929:5:193:-9.01162,0,-75.1967 dDocent_Contig_12180 10 . T G 300.711 . AB=0.259259;ABP=30.1939;AC=3;AF=0.375;AN=8;AO=18;CIGAR=1X;DP=108;DPB=108;DPRA=0;EPP=42.0968;EPPR=198.443;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=718;QR=3586;RO=90;RPL=0;RPP=42.0968;RPPR=198.443;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=90;SRP=198.443;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:54:50,4:50:1993:4:156:0,-1.83888,-165.143 0/1:30:23,7:23:917:7:281:-16.6302,0,-73.7994 0/1:10:7,3:7:284:3:121:-8.2699,0,-22.9237 0/1:14:10,4:10:392:4:160:-10.569,0,-31.4181 dDocent_Contig_12181 11 . T A 160.764 . AB=0.368421;ABP=5.8675;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=20;DPB=20;DPRA=9.5;EPP=18.2106;EPPR=31.2394;GTI=0;LEN=1;MEANALT=1;MQM=59.1429;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=273;QR=481;RO=13;RPL=0;RPP=18.2106;RPPR=31.2394;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=13;SRP=31.2394;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:6,4:6:216:4:154:-11.2127,0,-16.7755 0/0:1:1,0:1:34:0:0:0,-0.30103,-3.39891 0/1:9:6,3:6:231:3:119:-8.38574,0,-18.4466 ./.:.:.:.:.:.:.:. dDocent_Contig_12182 23 . A G 109.557 . AB=0.140625;ABP=74.8046;AC=2;AF=0.25;AN=8;AO=9;CIGAR=1X;DP=94;DPB=94;DPRA=2.13333;EPP=22.5536;EPPR=187.585;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=58.0706;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.941176;PAO=0;PQA=0;PQR=0;PRO=0;QA=365;QR=3414;RO=85;RPL=0;RPP=22.5536;RPPR=187.585;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=85;SRP=187.585;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:29:29,0:29:1151:0:0:0,-8.72987,-97.6655 0/1:48:42,6:42:1700:6:244:-7.88939,0,-138.769 0/1:16:13,3:13:522:3:121:-6.46372,0,-42.5115 0/0:1:1,0:1:41:0:0:0,-0.30103,-4.09457 dDocent_Contig_12184 98 . N A 103.545 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=4X11I2X;DP=3;DPB=8.5;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=111;QR=0;RO=0;RPL=3;RPP=9.52472;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:3:0,3:0:0:3:111:-10.3539,-0.90309,0 .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. dDocent_Contig_12185 7 . T C 1140.55 . 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G C 55.169 . AB=0.173913;ABP=24.253;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=50;DPB=50;DPRA=2.57143;EPP=13.8677;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.4;PAIREDR=0.933333;PAO=0;PQA=0;PQR=0;PRO=0;QA=182;QR=1797;RO=45;RPL=0;RPP=13.8677;RPPR=100.727;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:13:12,1:12:484:1:29:0,-1.01373,-41.0118 0/1:23:19,4:19:759:4:153:-7.21574,0,-61.706 0/0:6:6,0:6:245:0:0:0,-1.80618,-22.4295 0/0:8:8,0:8:309:0:0:0,-2.40824,-28.1681 dDocent_Contig_12187 37 . C T 136.872 . AB=0.5;ABP=3.0103;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=112;DPB=112;DPRA=0.294118;EPP=13.8677;EPPR=233.186;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.915094;PAO=0;PQA=0;PQR=0;PRO=0;QA=201;QR=4222;RO=106;RPL=0;RPP=13.8677;RPPR=233.186;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=106;SRP=233.186;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:35:35,0:35:1402:0:0:0,-10.536,-126.434 0/0:34:34,0:34:1348:0:0:0,-10.235,-121.582 0/0:33:33,0:33:1308:0:0:0,-9.93399,-117.983 0/1:10:4,5:4:164:5:201:-15.3862,0,-12.0629 dDocent_Contig_12188 20 . C T 58.5271 . AB=0.230769;ABP=11.1951;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=36;DPB=36;DPRA=1.69565;EPP=9.52472;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=123;QR=1318;RO=33;RPL=0;RPP=9.52472;RPPR=74.6689;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:7:7,0:7:279:0:0:0,-2.10721,-25.478 0/0:2:2,0:2:82:0:0:0,-0.60206,-7.77968 0/0:14:14,0:14:558:0:0:0,-4.21442,-50.5625 0/1:13:10,3:10:399:3:123:-7.5514,0,-32.3556 dDocent_Contig_12189 16 . T C 122.631 . AB=0.216216;ABP=28.8919;AC=3;AF=0.375;AN=8;AO=8;CIGAR=1X;DP=43;DPB=43;DPRA=2.05556;EPP=20.3821;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=49.875;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=311;QR=1421;RO=35;RPL=0;RPP=20.3821;RPPR=79.0118;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:7,3:7:278:3:114:-7.42763,0,-22.3794 0/1:9:7,2:7:286:2:82:-5.00209,0,-23.4055 0/1:18:15,3:15:612:3:115:-5.23116,0,-49.9984 0/0:6:6,0:6:245:0:0:0,-1.80618,-22.4295 dDocent_Contig_12190 54 . C A 1457.04 . AB=0.192308;ABP=24.391;AC=1;AF=0.125;AN=8;AO=5;CIGAR=4M1X5M;DP=107;DPB=67.8;DPRA=1.73333;EPP=13.8677;EPPR=118.098;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=202;QR=2084;RO=53;RPL=5;RPP=13.8677;RPPR=118.098;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:25:9,16,0:9:355:16,0:606,0:-47.3469,0,-24.787,-50.0562,-29.6034,-79.2712 0|0:41:11,30,0:11:435:30,0:1162,0:-92.5055,0,-27.1637,-95.8168,-36.1946,-131.618 0|1:26:18,3,5:18:699:3,5:114,202:-11.2498,-7.3291,-63.8484,0,-48.0947,-55.9365 0|0:15:15,0,0:15:595:0,0:0,0:0,-4.51545,-53.8916,-4.51545,-53.8916,-53.8916 dDocent_Contig_12192 192 . G A 79.9339 . AB=0.235294;ABP=13.3567;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=45;DPB=45;DPRA=1.82143;EPP=11.6962;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=157;QR=1556;RO=41;RPL=4;RPP=11.6962;RPPR=92.0407;RPR=0;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=92.0407;SRR=41;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:13,4:13:508:4:157:-9.39129,0,-40.9454 0/0:5:5,0:5:174:0:0:0,-1.50515,-15.9909 0/0:8:8,0:8:287:0:0:0,-2.40824,-26.1627 0/0:15:15,0:15:587:0:0:0,-4.51545,-53.1695 dDocent_Contig_12193 12 . A T 1821 . AB=0.147887;ABP=155.931;AC=2;AF=0.25;AN=8;AO=21;CIGAR=1M18I5M1X;DP=169;DPB=469.857;DPRA=0;EPP=48.6112;EPPR=39.9253;GTI=0;LEN=1;MEANALT=8.33333;MQM=60;MQMR=60;NS=4;NUMALT=7;ODDS=5.55112e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=751;QR=656;RO=17;RPL=0;RPP=48.6112;RPPR=39.9253;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:35:0,0,14,1,7,0,2,3:0:0:0,14,1,7,0,2,3:0,551,38,250,0,75,103:-65.7142,-65.7142,-65.7142,-20.3758,-20.3758,-16.1614,-62.5976,-62.5976,-17.2586,-62.2966,-45.339,-45.339,0,-42.2226,-43.2318,-65.7142,-65.7142,-20.3758,-62.5976,-45.339,-65.7142,-59.5708,-59.5708,-14.2313,-56.4542,-39.196,-59.5708,-58.9687,-57.3545,-57.3545,-12.0167,-54.238,-36.9808,-57.3545,-51.2113,-56.4514 0|0:52:7,3,4,7,3,2,0,14:7:270:3,4,7,3,2,0,14:119,159,269,105,78,0,463:-35.3105,-27.6196,-48.8923,-24.3237,-36.7017,-45.2955,-15.3336,-27.7117,-24.4158,-35.4026,-28.8763,-41.2539,-37.9581,-28.9684,-50.1485,-31.0049,-43.3827,-40.0869,-31.097,-44.639,-52.5784,-37.4177,-49.7954,-46.4997,-37.5098,-51.0516,-53.1805,-59.593,0,-12.3761,-9.08053,-0.0921813,-13.6334,-15.7611,-22.1731,-17.9587 1|0:55:5,0,4,4,11,4,0,11:5:194:0,4,4,11,4,0,11:0,159,131,396,152,0,369:-44.7272,-46.2323,-62.1746,-33.1382,-49.081,-47.8768,-35.9212,-51.8633,-38.7698,-50.6592,-13.9276,-29.8703,-16.7761,-19.5602,-26.559,-33.7649,-49.7075,-36.6136,-39.3965,-17.4031,-48.5034,-46.2323,-62.1746,-49.081,-51.8633,-29.8703,-49.7075,-62.1746,-16.3594,-32.3014,-19.2078,-21.9918,0,-19.8347,-32.3014,-28.99 0|0:27:5,0,14,0,0,3,0,4:5:192:0,14,0,0,3,0,4:0,549,0,0,101,0,141:-43.6662,-45.1713,-60.9337,0,-15.7737,-11.5593,-45.1713,-60.9337,-15.7737,-60.9337,-45.1713,-60.9337,-15.7737,-60.9337,-60.9337,-36.9937,-52.755,-7.59787,-52.755,-52.755,-51.8519,-45.1713,-60.9337,-15.7737,-60.9337,-60.9337,-52.755,-60.9337,-33.6976,-49.459,-4.29953,-49.459,-49.459,-41.282,-49.459,-48.2549 dDocent_Contig_12194 32 . G C 410.14 . AB=0.314815;ABP=19.0953;AC=2;AF=0.25;AN=8;AO=19;CIGAR=1X;DP=126;DPB=126;DPRA=8.06667;EPP=44.2683;EPPR=235.358;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=748;QR=4185;RO=107;RPL=0;RPP=44.2683;RPPR=235.358;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=107;SRP=235.358;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:67:65,2:65:2534:2:82:0,-12.3893,-220.446 0/1:47:32,15:32:1254:15:585:-38.8334,0,-98.9878 0/1:7:5,2:5:201:2:81:-5.57852,0,-16.3639 0/0:5:5,0:5:196:0:0:0,-1.50515,-18.0143 dDocent_Contig_12196 106 . N A 68.3781 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=2X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=72;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. 1|1:2:0,2:0:0:2:72:-6.83672,-0.60206,0 .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. dDocent_Contig_12197 16 . A G 80.6798 . AB=0.123288;ABP=92.9925;AC=2;AF=0.25;AN=8;AO=10;CIGAR=1X;DP=117;DPB=117;DPRA=1.36232;EPP=24.725;EPPR=235.358;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.8;PAIREDR=0.915888;PAO=0;PQA=0;PQR=0;PRO=0;QA=403;QR=4143;RO=107;RPL=0;RPP=24.725;RPPR=235.358;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=107;SRP=235.358;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:38:34,4:34:1356:4:161:-3.43613,0,-110.863 0/1:35:30,5:30:1165:5:202:-8.02582,0,-94.6001 0/0:23:23,0:23:857:0:0:0,-6.92369,-77.4354 0/0:21:20,1:20:765:1:40:0,-2.32595,-65.1669 dDocent_Contig_12198 42 . A C 39.7437 . AB=0.25;ABP=7.35324;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X;DP=24;DPB=24;DPRA=1.5;EPP=7.35324;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=861;RO=22;RPL=0;RPP=7.35324;RPPR=50.7827;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:8:6,2:6:229:2:82:-5.37144,0,-18.5644 0/0:13:13,0:13:510:0:0:0,-3.91339,-46.2437 0/0:1:1,0:1:41:0:0:0,-0.30103,-4.09457 0/0:2:2,0:2:81:0:0:0,-0.60206,-7.68573 dDocent_Contig_12199 21 . A G 38.3914 . AB=0.135135;ABP=45.7942;AC=2;AF=0.25;AN=8;AO=6;CIGAR=1X;DP=63;DPB=63;DPRA=6.66667;EPP=16.0391;EPPR=126.784;GTI=0;LEN=1;MEANALT=1;MQM=52.1667;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=239;QR=2310;RO=57;RPL=0;RPP=16.0391;RPPR=126.784;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:33:29,4:29:1169:4:157:-4.53119,0,-95.5528 0/0:23:22,1:22:897:1:41:0,-2.84493,-76.9553 0/1:4:3,1:3:123:1:41:-2.68345,0,-10.2607 0/0:3:3,0:3:121:0:0:0,-0.90309,-11.28 dDocent_Contig_12200 58 . C T 43.0253 . AB=0.1875;ABP=16.582;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=54;DPB=54;DPRA=1.26316;EPP=9.52472;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.0588;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.490196;PAO=0;PQA=0;PQR=0;PRO=0;QA=116;QR=2031;RO=51;RPL=3;RPP=9.52472;RPPR=113.755;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:22:22,0:22:874:0:0:0,-6.62266,-78.6542 0/0:15:15,0:15:601:0:0:0,-4.51545,-54.428 0/1:16:13,3:13:517:3:116:-6.00092,0,-41.2021 0/0:1:1,0:1:39:0:0:0,-0.30103,-3.89656 dDocent_Contig_12201 31 . A G 4347.81 . AB=0.0735294;ABP=110.434;AC=0;AF=0;AN=8;AO=5;CIGAR=23M1X7M;DP=290;DPB=236.839;DPRA=0;EPP=13.8677;EPPR=126.784;GTI=0;LEN=1;MEANALT=6;MQM=60;MQMR=60;NS=4;NUMALT=5;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0.166667;PQA=6.83333;PQR=6.83333;PRO=0.166667;QA=202;QR=2242;RO=57;RPL=0;RPP=13.8677;RPPR=126.784;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:123:22,71,0,16,8,0:22:863:71,0,16,8,0:2468,0,598,309,0:-192.976,0,-49.6029,-199.599,-70.976,-270.578,-150.637,-22.0219,-221.617,-216.8,-174.223,-45.6023,-245.202,-196.241,-242.794,-199.599,-70.976,-270.578,-221.617,-245.202,-270.578 0|0:68:11,23,18,1,9,5:11:431:23,18,1,9,5:811,696,40,360,202:-82.499,-20.9379,-49.4545,-29.426,0,-59.4507,-82.5149,-53.0829,-61.5738,-117.656,-56.1524,-26.7221,-35.2111,-88.3,-88.8862,-69.1547,-39.7235,-48.2135,-101.302,-74.9398,-103.092 0|0:66:21,34,3,0,7,0:21:834:34,3,0,7,0:1162,116,0,279,0:-86.8667,0,-58.427,-83.7834,-59.2602,-151.555,-93.1884,-68.6621,-152.458,-161.862,-70.2052,-45.6857,-129.479,-138.883,-136.776,-93.1884,-68.6621,-152.458,-161.862,-138.883,-161.862 0|0:33:3,26,0,0,4,0:3:114:26,0,0,4,0:951,0,0,156,0:-79.8367,-3.47898,-4.99572,-80.7398,-12.8225,-90.0895,-80.7398,-12.8225,-90.0895,-90.0895,-67.9155,0,-77.2656,-77.2656,-76.0615,-80.7398,-12.8225,-90.0895,-90.0895,-77.2656,-90.0895 dDocent_Contig_12202 7 . T A 53.9468 . AB=0.169811;ABP=53.2;AC=2;AF=0.25;AN=8;AO=10;CIGAR=1X1M2X3M1X;DP=96;DPB=96;DPRA=0.666667;EPP=24.725;EPPR=183.243;GTI=0;LEN=1;MEANALT=1.66667;MQM=32.1;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.1;PAIREDR=0.493976;PAO=0;PQA=0;PQR=0;PRO=0;QA=392;QR=3245;RO=83;RPL=0;RPP=24.725;RPPR=183.243;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=83;SRP=183.243;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:11:9,1:9:349:1:36:0,-0.508944,-28.9072 0|1:25:20,5:20:785:5:198:-5.64667,0,-63.4495 0|0:32:31,0:31:1213:0:0:0,-9.33193,-109.073 0|1:28:23,4:23:898:4:158:-3.13776,0,-72.6219 dDocent_Contig_12203 10 . G A 671.006 . AB=0.555556;ABP=3.9754;AC=4;AF=0.5;AN=8;AO=22;CIGAR=1X;DP=49;DPB=49;DPRA=1.15152;EPP=50.7827;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=57.963;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.888889;PAO=0;PQA=0;PQR=0;PRO=0;QA=891;QR=1084;RO=27;RPL=0;RPP=50.7827;RPPR=61.6401;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:11,0:11:437:0:0:0,-3.31133,-39.18 0/1:19:14,5:14:565:5:205:-13.1154,0,-45.4702 0/1:17:2,15:2:82:15:604:-49.5801,0,-2.66217 1/1:2:0,2:0:0:2:82:-7.77968,-0.60206,0 dDocent_Contig_12204 27 . C G 154.495 . AB=0.333333;ABP=8.07707;AC=2;AF=0.25;AN=8;AO=7;CIGAR=1X;DP=39;DPB=39;DPRA=1.16667;EPP=18.2106;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=268;QR=1288;RO=32;RPL=0;RPP=18.2106;RPPR=72.4974;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:3:3,0:3:120:0:0:0,-0.90309,-11.1873 0/1:14:8,6:8:327:6:233:-17.1224,0,-25.5857 0/1:7:6,1:6:240:1:35:-1.39142,0,-19.8684 0/0:15:15,0:15:601:0:0:0,-4.51545,-54.429 dDocent_Contig_12205 24 . A T 187.194 . AB=0.181818;ABP=61.0478;AC=3;AF=0.375;AN=8;AO=12;CIGAR=1X2M1X;DP=81;DPB=81;DPRA=1.46667;EPP=29.068;EPPR=150.67;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.970588;PAO=0;PQA=0;PQR=0;PRO=0;QA=476;QR=2683;RO=68;RPL=0;RPP=29.068;RPPR=150.67;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=68;SRP=150.67;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:38:33,5:33:1295:5:196:-6.57468,0,-105.385 0|1:24:19,5:19:756:5:200:-11.155,0,-61.1394 0|0:15:14,0:14:555:0:0:0,-4.21442,-49.8844 0|1:4:2,2:2:77:2:80:-6.38767,0,-6.10471 dDocent_Contig_12206 117 . C A 303.792 . AB=0;ABP=0;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=40;DPB=40;DPRA=0.666667;EPP=24.725;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.69407e-21;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=332;QR=1036;RO=30;RPL=0;RPP=24.725;RPPR=68.1545;RPR=10;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=68.1545;SRR=30;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:16:16,0:16:551:0:0:0,-4.81648,-49.9162 0/0:14:14,0:14:485:0:0:0,-4.21442,-43.98 1/1:10:0,10:0:0:10:332:-30.2031,-3.0103,0 ./.:.:.:.:.:.:.:. dDocent_Contig_12207 107 . N A 171.962 . AB=0.666667;ABP=3.73412;AC=4;AF=1;AN=4;AO=2;CIGAR=1X3M;DP=6;DPB=6;DPRA=1;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=0;NS=2;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=71;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. 1|1:3:0,3,0:0:0:3,0:106,0:-9.88916,-0.90309,0,-9.88916,-0.90309,-9.88916 .:.:.:.:.:.:.:. 1|1:3:0,1,2:0:0:1,2:35,71:-8.94873,-6.14,-5.83897,-3.15759,0,-2.55553 dDocent_Contig_12208 41 . T A 394.875 . AB=0.464286;ABP=3.32051;AC=5;AF=0.625;AN=8;AO=16;CIGAR=1X;DP=31;DPB=31;DPRA=0;EPP=37.7539;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1;MQM=59.125;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=0.9375;PAIREDR=0.933333;PAO=0;PQA=0;PQR=0;PRO=0;QA=577;QR=542;RO=15;RPL=0;RPP=37.7539;RPPR=35.5824;RPR=16;RUN=1;SAF=0;SAP=37.7539;SAR=16;SRF=0;SRP=35.5824;SRR=15;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0 0/1:7:2,5:2:73:5:180:-14.4449,0,-4.82409 0/1:11:5,6:5:176:6:216:-16.4428,0,-12.8736 0/1:10:8,2:8:293:2:73:-3.921,0,-23.7107 dDocent_Contig_12210 7 . T C 319.972 . AB=0.153333;ABP=159.588;AC=2;AF=0.25;AN=8;AO=27;CIGAR=1X;DP=280;DPB=280;DPRA=0;EPP=61.6401;EPPR=552.393;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.8814;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1041;QR=9658;RO=253;RPL=0;RPP=61.6401;RPPR=552.393;RPR=27;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=253;SRP=552.393;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:112:93,19:93:3536:19:731:-32.4057,0,-284.647 0/0:89:88,1:88:3378:1:39:0,-22.8951,-300.18 0/0:41:38,3:38:1465:3:115:0,-1.61734,-121.403 0/1:38:34,4:34:1279:4:156:-2.97815,0,-103.963 dDocent_Contig_12212 17 . T C 766.631 . AB=0.333333;ABP=24.0012;AC=2;AF=0.25;AN=8;AO=29;CIGAR=1X;DP=131;DPB=131;DPRA=1.97727;EPP=65.983;EPPR=224.5;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1173;QR=4112;RO=102;RPL=0;RPP=65.983;RPPR=224.5;RPR=29;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=102;SRP=224.5;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:50:34,16:34:1375:16:651:-43.8714,0,-108.952 0/1:37:24,13:24:963:13:522:-36.1896,0,-75.8314 0/0:28:28,0:28:1141:0:0:0,-8.42884,-102.967 0/0:16:16,0:16:633:0:0:0,-4.81648,-57.3005 dDocent_Contig_12213 7 . T A 1383.65 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=40;CIGAR=1X;DP=40;DPB=40;DPRA=0;EPP=89.8692;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1515;QR=0;RO=0;RPL=0;RPP=89.8692;RPPR=0;RPR=40;RUN=1;SAF=40;SAP=89.8692;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:19:0,19:0:0:19:714:-64.5874,-5.71957,0 1/1:7:0,7:0:0:7:267:-24.3925,-2.10721,0 1/1:5:0,5:0:0:5:188:-17.2839,-1.50515,0 1/1:9:0,9:0:0:9:346:-31.4988,-2.70927,0 dDocent_Contig_12215 37 . G A 154.509 . AB=0.428571;ABP=3.63072;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=74;DPB=74;DPRA=0.7;EPP=16.0391;EPPR=150.67;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=0.955882;PAO=0;PQA=0;PQR=0;PRO=0;QA=230;QR=2705;RO=68;RPL=0;RPP=16.0391;RPPR=150.67;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=68;SRP=150.67;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:8,6:8:327:6:230:-16.8488,0,-25.5857 0/0:31:31,0:31:1228:0:0:0,-9.33193,-110.783 0/0:10:10,0:10:398:0:0:0,-3.0103,-36.1776 0/0:19:19,0:19:752:0:0:0,-5.71957,-67.9964 dDocent_Contig_12216 11 . G C 251.939 . AB=0.428571;ABP=3.94093;AC=1;AF=0.125;AN=8;AO=10;CIGAR=1X;DP=70;DPB=70;DPRA=1.91667;EPP=24.725;EPPR=133.299;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.9;PAIREDR=0.75;PAO=0;PQA=0;PQR=0;PRO=0;QA=406;QR=2402;RO=60;RPL=0;RPP=24.725;RPPR=133.299;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:9:9,0:9:360:0:0:0,-2.70927,-32.7638 0/1:21:12,9:12:475:9:365:-26.8929,0,-36.7759 0/0:25:24,1:24:957:1:41:0,-3.43118,-82.3386 0/0:15:15,0:15:610:0:0:0,-4.51545,-55.2378 dDocent_Contig_12217 13 . G T 182.586 . AB=0.181818;ABP=61.0478;AC=3;AF=0.375;AN=8;AO=13;CIGAR=1X;DP=89;DPB=89;DPRA=0;EPP=31.2394;EPPR=168.042;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.384615;PAIREDR=0.868421;PAO=0;PQA=0;PQR=0;PRO=0;QA=511;QR=2933;RO=76;RPL=0;RPP=31.2394;RPPR=168.042;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=76;SRP=168.042;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:23:22,1:22:823:1:40:0,-2.92801,-70.3822 0/1:30:25,5:25:972:5:199:-9.25783,0,-78.7584 0/1:25:22,3:22:861:3:121:-3.75424,0,-70.2815 0/1:11:7,4:7:277:4:151:-10.6425,0,-21.9879 dDocent_Contig_12218 112 . T C 2905.2 . AB=0.2;ABP=163.265;AC=2;AF=0.25;AN=8;AO=41;CIGAR=1M1X2M1X;DP=205;DPB=206.6;DPRA=0;EPP=92.0407;EPPR=109.412;GTI=0;LEN=1;MEANALT=2.75;MQM=40.2195;MQMR=58.6122;NS=4;NUMALT=3;ODDS=0;PAIRED=0.585366;PAIREDR=0.714286;PAO=0;PQA=0;PQR=0;PRO=0;QA=1344;QR=1681;RO=49;RPL=0;RPP=92.0407;RPPR=109.412;RPR=41;RUN=1;SAF=0;SAP=92.0407;SAR=41;SRF=0;SRP=109.412;SRR=49;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:110:20,14,0,76:20:686:14,0,76:453,0,2572:-198.295,-174.559,-226.035,-204.316,-230.249,-260.008,0,-25.9944,-55.7312,-32.8529 1|0:39:6,13,3,17:6:209:13,3,17:412,100,565:-54.5458,-27.9753,-40.0809,-48.2556,-35.8996,-63.3746,-12.3335,0,-20.2637,-23.2452 0|0:37:14,8,0,15:14:477:8,0,15:275,0,496:-34.3442,-16.7762,-53.0789,-38.5586,-55.4871,-77.2651,0,-16.9287,-38.7035,-34.1881 0|1:19:9,6,1,2:9:309:6,1,2:204,35,70:-10.7323,0,-23.3157,-10.5873,-22.2727,-35.4078,-8.05244,-19.7431,-30.3281,-32.5758 dDocent_Contig_12219 7 . T C 248.19 . AB=0.181818;ABP=70.7208;AC=1;AF=0.125;AN=8;AO=17;CIGAR=1X;DP=198;DPB=198;DPRA=2.53571;EPP=39.9253;EPPR=393.875;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=662;QR=6897;RO=180;RPL=0;RPP=39.9253;RPPR=393.875;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=180;SRP=393.875;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:77:63,14:63:2408:14:545:-26.217,0,-193.75 0/0:65:62,3:62:2380:3:117:0,-8.65657,-203.501 0/0:45:44,0:44:1700:0:0:0,-13.2453,-152.869 0/0:11:11,0:11:409:0:0:0,-3.31133,-37.1529 dDocent_Contig_12221 8 . C T 369.839 . AB=0.380952;ABP=5.59539;AC=2;AF=0.25;AN=8;AO=10;CIGAR=1X3M1X;DP=56;DPB=56;DPRA=0;EPP=24.725;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1.33333;MQM=59.3;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.9;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=392;QR=1488;RO=38;RPL=0;RPP=24.725;RPPR=85.5263;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:15:2,7,6:2:78:7,6:276,242:-35.6395,-13.5499,-17.8512,-16.2889,0,-20.8936 0|0:25:23,2,0:23:904:2,0:76,0:0,-0.311076,-74.4598,-6.92369,-75.0619,-81.2937 0|0:10:8,0,2:8:307:0,2:0,79:-4.48694,-6.89518,-32.0833,0,-25.5805,-24.9784 0|1:6:5,1,0:5:199:1,0:40,0:-2.1895,0,-16.4828,-3.69465,-16.7838,-20.0792 dDocent_Contig_12222 30 . A T 126.226 . AB=0.285714;ABP=11.386;AC=2;AF=0.25;AN=8;AO=6;CIGAR=1X;DP=41;DPB=41;DPRA=1.05;EPP=16.0391;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=239;QR=1365;RO=35;RPL=0;RPP=16.0391;RPPR=79.0118;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:10,5:10:403:5:198:-13.6796,0,-32.1135 0/1:6:5,1:5:177:1:41:-2.28839,0,-14.4631 0/0:15:15,0:15:598:0:0:0,-4.51545,-54.1604 0/0:5:5,0:5:187:0:0:0,-1.50515,-17.1885 dDocent_Contig_12223 153 . A C 152.02 . AB=0;ABP=0;AC=2;AF=0.25;AN=8;AO=4;CIGAR=1X;DP=37;DPB=37;DPRA=0.363636;EPP=11.6962;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=158;QR=1283;RO=33;RPL=0;RPP=11.6962;RPPR=74.6689;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=74.6689;SRR=33;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:4:0,4:0:0:4:158:-14.5999,-1.20412,0 0/0:20:20,0:20:783:0:0:0,-6.0206,-70.7881 0/0:7:7,0:7:271:0:0:0,-2.10721,-24.7535 0/0:6:6,0:6:229:0:0:0,-1.80618,-20.972 dDocent_Contig_12224 9 . T C 223.495 . AB=0.152174;ABP=148.027;AC=4;AF=0.5;AN=8;AO=21;CIGAR=1X;DP=138;DPB=138;DPRA=0;EPP=48.6112;EPPR=257.073;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=776;QR=4463;RO=117;RPL=0;RPP=48.6112;RPPR=257.073;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=117;SRP=257.073;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:13,6:13:500:6:193:-11.9619,0,-39.6275 0/1:68:59,9:59:2261:9:349:-11.3007,0,-183.24 0/1:36:32,4:32:1201:4:156:-3.58021,0,-97.5435 0/1:15:13,2:13:501:2:78:-2.88802,0,-40.9224 dDocent_Contig_12225 50 . G C 109.889 . AB=0.205882;ABP=28.557;AC=3;AF=0.375;AN=8;AO=7;CIGAR=1X;DP=36;DPB=36;DPRA=5.66667;EPP=18.2106;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=282;QR=1139;RO=29;RPL=7;RPP=18.2106;RPPR=65.983;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:16,2:16:627:2:80:-2.17325,0,-51.3487 0/1:9:6,3:6:235:3:123:-8.75552,0,-18.8119 0/0:2:2,0:2:78:0:0:0,-0.60206,-7.4033 0/1:7:5,2:5:199:2:79:-5.39042,0,-16.1813 dDocent_Contig_12226 124 . C T 72.5003 . AB=0;ABP=0;AC=2;AF=0.25;AN=8;AO=2;CIGAR=1X;DP=19;DPB=19;DPRA=0.352941;EPP=7.35324;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=70;QR=530;RO=16;RPL=0;RPP=7.35324;RPPR=37.7539;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=37.7539;SRR=16;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:70:-6.6474,-0.60206,0 0/0:5:5,0:5:159:0:0:0,-1.50515,-14.6238 0/0:2:2,0:2:65:0:0:0,-0.60206,-6.17353 0/0:10:9,0:9:306:0:0:0,-2.70927,-27.7738 dDocent_Contig_12227 19 . C T 413.978 . AB=0.0571429;ABP=62.6327;AC=0;AF=0;AN=8;AO=2;CIGAR=1X3M3X6M;DP=92;DPB=94.4615;DPRA=1.94444;EPP=7.35324;EPPR=137.642;GTI=0;LEN=1;MEANALT=6;MQM=29;MQMR=55.1613;NS=4;NUMALT=4;ODDS=0;PAIRED=0;PAIREDR=0.33871;PAO=0;PQA=0;PQR=0;PRO=0;QA=58;QR=2363;RO=62;RPL=0;RPP=7.35324;RPPR=137.642;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:22:21,0,0,0,0:21:797:0,0,0,0:0,0,0,0:0,-6.32163,-71.1148,-6.32163,-71.1148,-71.1148,-6.32163,-71.1148,-71.1148,-71.1148,-6.32163,-71.1148,-71.1148,-71.1148,-71.1148 0|0:21:9,0,0,11,1:9:345:0,0,11,1:0,0,423,39:-30.8526,-33.5618,-61.7923,-33.5618,-61.7923,-61.7923,0,-28.2207,-28.2207,-24.9094,-30.3612,-58.5924,-58.5924,-25.0208,-58.2914 0|0:35:19,2,2,4,6:19:734:2,2,4,6:62,58,160,239:-13.9432,-15.2368,-74.8964,-15.5995,-71.4294,-75.2574,-6.98,-62.8252,-63.1864,-66.0513,0,-55.8575,-56.2188,-47.6123,-58.4813 0|0:14:13,0,0,0,0:13:487:0,0,0,0:0,0,0,0:0,-3.91339,-43.5583,-3.91339,-43.5583,-43.5583,-3.91339,-43.5583,-43.5583,-43.5583,-3.91339,-43.5583,-43.5583,-43.5583,-43.5583 dDocent_Contig_12228 39 . G T 35.4775 . AB=0.222222;ABP=9.04217;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1M2I1X;DP=22;DPB=24;DPRA=1.38462;EPP=7.35324;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=786;RO=20;RPL=0;RPP=7.35324;RPPR=46.4397;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. 0|1:9:7,2:7:274:2:82:-5.07041,0,-22.3179 0|0:9:9,0:9:360:0:0:0,-2.70927,-32.7644 0|0:4:4,0:4:152:0:0:0,-1.20412,-14.0456 dDocent_Contig_12229 40 . G A 213.594 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=8;CIGAR=1M2I1X2M1X;DP=9;DPB=12.2;DPRA=2.66667;EPP=20.3821;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=31;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=247;QR=0;RO=0;RPL=0;RPP=20.3821;RPPR=0;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:1:0,0:0:0:0:0:0,0,0 1|1:1:0,1:0:0:1:32:-2.84625,-0.30103,0 1|1:6:0,6:0:0:6:182:-14.9245,-1.80618,0 1|1:1:0,1:0:0:1:33:-2.88769,-0.30103,0 dDocent_Contig_12230 32 . C T 41.4893 . AB=0.115942;ABP=91.4113;AC=3;AF=0.375;AN=8;AO=8;CIGAR=1X;DP=93;DPB=93;DPRA=0.958333;EPP=20.3821;EPPR=187.585;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=323;QR=3337;RO=85;RPL=0;RPP=20.3821;RPPR=187.585;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=85;SRP=187.585;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:39:35,4:35:1355:4:162:-3.22679,0,-110.47 0/0:24:24,0:24:942:0:0:0,-7.22472,-85.0758 0/1:12:10,2:10:406:2:81:-4.07337,0,-33.2882 0/1:18:16,2:16:634:2:80:-2.17304,0,-51.9717 dDocent_Contig_12231 16 . G T 370.683 . AB=0.5;ABP=3.0103;AC=2;AF=0.25;AN=8;AO=16;CIGAR=1X;DP=47;DPB=47;DPRA=2.13333;EPP=37.7539;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=45;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.5;PAIREDR=0.741935;PAO=0;PQA=0;PQR=0;PRO=0;QA=626;QR=1171;RO=31;RPL=0;RPP=37.7539;RPPR=70.3259;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:5,4:5:185:4:160:-9.19698,0,-14.2998 0/1:23:11,12:11:417:12:466:-31.2692,0,-30.9527 0/0:8:8,0:8:296:0:0:0,-2.40824,-26.9901 0/0:7:7,0:7:273:0:0:0,-2.10721,-24.9375 dDocent_Contig_12232 22 . C T 64.9072 . AB=0.146154;ABP=144.39;AC=1;AF=0.125;AN=8;AO=29;CIGAR=1X;DP=374;DPB=374;DPRA=3.44444;EPP=36.0317;EPPR=104.528;GTI=0;LEN=1;MEANALT=1;MQM=30.7241;MQMR=50.7536;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.185507;PAO=0;PQA=0;PQR=0;PRO=0;QA=1125;QR=13557;RO=345;RPL=0;RPP=65.983;RPPR=752.168;RPR=29;RUN=1;SAF=4;SAP=36.0317;SAR=25;SRF=236;SRP=104.528;SRR=109;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:128:123,5:123:4808:5:197:0,-29.3447,-391.863 0/1:130:111,19:111:4388:19:730:-8.18969,0,-347.71 0/0:83:78,5:78:3054:5:198:0,-14.3336,-237.149 0/0:33:33,0:33:1307:0:0:0,-9.93399,-111.207 dDocent_Contig_12234 8 . C T 1009.12 . AB=0.357143;ABP=5.49198;AC=1;AF=0.125;AN=8;AO=6;CIGAR=2X;DP=54;DPB=54;DPRA=2.25;EPP=16.0391;EPPR=44.2683;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=230;QR=721;RO=19;RPL=0;RPP=16.0391;RPPR=44.2683;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:21:11,0,10:11:420:0,10:0,387:-28.8659,-32.1772,-66.6333,0,-34.8403,-31.83 0|1:14:8,5,1:8:301:5,1:194,39:-13.5301,0,-23.1437,-12.7322,-21.4414,-37.0849 0|0:13:0,1,12:0:0:1,12:36,453:-40.7552,-37.8191,-37.5181,-3.61236,-0.315115,0 0|0:6:0,0,6:0:0:0,6:0,231:-21.1579,-21.1579,-21.1579,-1.80618,-1.80618,0 dDocent_Contig_12235 47 . T G 1118.15 . AB=0.388889;ABP=14.5915;AC=4;AF=0.5;AN=8;AO=42;CIGAR=1X;DP=108;DPB=108;DPRA=0;EPP=70.0157;EPPR=91.9749;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.939394;PAO=0;PQA=0;PQR=0;PRO=0;QA=1670;QR=2354;RO=66;RPL=0;RPP=94.2121;RPPR=146.327;RPR=42;RUN=1;SAF=39;SAP=70.0157;SAR=3;SRF=59;SRP=91.9749;SRR=7;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:39:28,11:28:977:11:444:-28.5754,0,-76.4791 0/1:34:27,7:27:979:7:275:-14.8823,0,-78.1736 0/1:14:6,8:6:211:8:319:-24.8614,0,-15.1168 0/1:21:5,16:5:187:16:632:-50.8939,0,-10.8702 dDocent_Contig_12236 69 . A G 63.8346 . AB=0.125;ABP=32.3252;AC=4;AF=0.5;AN=8;AO=5;CIGAR=1X;DP=45;DPB=45;DPRA=0.5;EPP=13.8677;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=40;MQMR=46.45;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.675;PAO=0;PQA=0;PQR=0;PRO=0;QA=181;QR=1403;RO=40;RPL=0;RPP=13.8677;RPPR=89.8692;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=89.8692;SRR=40;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:18:18,0:18:626:0:0:0,-5.41854,-53.1396 1/1:3:1,2:1:16:2:74:-6.03653,-0.244788,0 0/1:16:14,2:14:532:2:68:-1.42705,0,-41.9418 0/1:8:7,1:7:229:1:39:-1.23788,0,-17.1465 dDocent_Contig_12237 108 . C A 56.3792 . AB=0.2;ABP=18.6449;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X3M1X;DP=31;DPB=31;DPRA=3.63636;EPP=11.6962;EPPR=55.1256;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.833333;PAO=0;PQA=0;PQR=0;PRO=0;QA=136;QR=794;RO=24;RPL=0;RPP=11.6962;RPPR=55.1256;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=55.1256;SRR=24;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:20:13,2,4:13:417:2,4:55,136:-7.16043,-6.73999,-39.7436,0,-29.3083,-32.4463 .:.:.:.:.:.:.:. 0|0:8:8,0,0:8:274:0,0:0,0:0,-2.40824,-24.9939,-2.40824,-24.9939,-24.9939 0|0:3:3,0,0:3:103:0,0:0,0:0,-0.90309,-9.60997,-0.90309,-9.60997,-9.60997 dDocent_Contig_12238 46 . C T 1612.07 . AB=0.471074;ABP=3.88966;AC=4;AF=0.5;AN=8;AO=57;CIGAR=1X;DP=121;DPB=121;DPRA=0;EPP=118.251;EPPR=141.985;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.596491;PAIREDR=0.703125;PAO=0;PQA=0;PQR=0;PRO=0;QA=2263;QR=2555;RO=64;RPL=1;RPP=118.251;RPPR=141.985;RPR=56;RUN=1;SAF=57;SAP=126.784;SAR=0;SRF=64;SRP=141.985;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:54:26,28:26:1046:28:1112:-84.1051,0,-78.1752 0/1:28:13,15:13:505:15:591:-45.0976,0,-37.3639 0/1:28:20,8:20:816:8:319:-20.6471,0,-65.3249 0/1:11:5,6:5:188:6:241:-18.755,0,-13.9646 dDocent_Contig_12239 45 . G A 187.802 . AB=0.183673;ABP=45.5977;AC=4;AF=0.5;AN=8;AO=10;CIGAR=1X;DP=55;DPB=55;DPRA=3.33333;EPP=24.725;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.1556;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=397;QR=1762;RO=45;RPL=0;RPP=24.725;RPPR=100.727;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:32:25,7:25:965:7:276:-15.5738,0,-77.3534 1/1:1:0,1:0:0:1:41:-4.09457,-0.30103,0 0/0:5:5,0:5:201:0:0:0,-1.50515,-18.4705 0/1:17:15,2:15:596:2:80:-2.47428,0,-48.8612 dDocent_Contig_12240 17 . G A 137.871 . AB=0.291667;ABP=12.0581;AC=2;AF=0.25;AN=8;AO=7;CIGAR=1X;DP=42;DPB=42;DPRA=1.33333;EPP=18.2106;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.685714;PAO=0;PQA=0;PQR=0;PRO=0;QA=263;QR=1403;RO=35;RPL=0;RPP=18.2106;RPPR=79.0118;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:7:5,2:5:204:2:81:-5.57852,0,-16.6368 0/1:17:12,5:12:486:5:182:-11.6065,0,-38.9735 0/0:11:11,0:11:441:0:0:0,-3.31133,-40.0441 0/0:7:7,0:7:272:0:0:0,-2.10721,-24.8435 dDocent_Contig_12242 7 . T G 254.849 . AB=0.4;ABP=3.44459;AC=5;AF=0.625;AN=8;AO=2;CIGAR=1X7M;DP=33;DPB=33;DPRA=0.625;EPP=7.35324;EPPR=42.0968;GTI=0;LEN=1;MEANALT=3;MQM=19;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=38;QR=710;RO=18;RPL=0;RPP=7.35324;RPPR=42.0968;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:5:0,5,0:0:0:5,0:193,0:-13.5196,-1.50515,0,-13.5196,-1.50515,-13.5196 0|0:11:11,0,0:11:436:0,0:0,0:0,-3.31133,-39.5959,-3.31133,-39.5959,-39.5959 0|1:12:7,5,0:7:274:5,0:181,0:-8.00448,0,-21.4161,-10.1117,-22.9213,-32.7227 1|1:5:0,2,2:0:0:2,2:77,38:-6.86454,-2.1448,-1.54274,-4.6435,0,-4.04144 dDocent_Contig_12243 201 . C T 156.774 . AB=0.285714;ABP=14.1779;AC=2;AF=0.25;AN=8;AO=8;CIGAR=1X;DP=54;DPB=54;DPRA=1.07692;EPP=20.3821;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.875;PAIREDR=0.717391;PAO=0;PQA=0;PQR=0;PRO=0;QA=293;QR=1662;RO=46;RPL=8;RPP=20.3821;RPPR=102.898;RPR=0;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=102.898;SRR=46;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:10:10,0:10:349:0:0:0,-3.0103,-31.7439 0/0:16:16,0:16:586:0:0:0,-4.81648,-53.0769 0/1:19:17,2:17:623:2:74:-1.30631,0,-50.6856 0/1:9:3,6:3:104:6:219:-17.3549,0,-6.99294 dDocent_Contig_12244 37 . A G 67.7448 . AB=0.151515;ABP=37.8197;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=65;DPB=65;DPRA=3.09375;EPP=13.8677;EPPR=133.299;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=197;QR=2389;RO=60;RPL=0;RPP=13.8677;RPPR=133.299;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:33:28,5:28:1109:5:197:-8.17241,0,-90.1666 0/0:10:10,0:10:395:0:0:0,-3.0103,-35.906 0/0:14:14,0:14:564:0:0:0,-4.21442,-51.1028 0/0:8:8,0:8:321:0:0:0,-2.40824,-29.2587 dDocent_Contig_12245 32 . A C 172.191 . AB=0.20339;ABP=48.096;AC=2;AF=0.25;AN=8;AO=12;CIGAR=1X2M1X;DP=62;DPB=62;DPRA=19.6667;EPP=29.068;EPPR=107.241;GTI=0;LEN=1;MEANALT=2;MQM=36;MQMR=59.4167;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.875;PAO=0;PQA=0;PQR=0;PRO=0;QA=482;QR=1870;RO=48;RPL=0;RPP=29.068;RPPR=107.241;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:38:28,8:28:1076:8:322:-14.1649,0,-85.8581 0|1:21:17,4:17:672:4:160:-6.45132,0,-54.4919 0|0:2:2,0:2:81:0:0:0,-0.60206,-7.68573 0|0:1:1,0:1:41:0:0:0,-0.30103,-4.09457 dDocent_Contig_12246 32 . A T 59.6866 . AB=0.25;ABP=9.52472;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=47;DPB=47;DPRA=1.02857;EPP=9.52472;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=0.704545;PAO=0;PQA=0;PQR=0;PRO=0;QA=121;QR=1753;RO=44;RPL=0;RPP=9.52472;RPPR=98.5551;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:10:10,0:10:392:0:0:0,-3.0103,-35.6329 0/1:12:9,3:9:366:3:121:-7.66763,0,-29.6928 0/0:11:11,0:11:442:0:0:0,-3.31133,-40.136 0/0:14:14,0:14:553:0:0:0,-4.21442,-50.1103 dDocent_Contig_12247 112 . A G 368.097 . AB=0.4;ABP=5.61607;AC=6;AF=0.75;AN=8;AO=15;CIGAR=1X1M;DP=33;DPB=33;DPRA=0;EPP=35.5824;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=515;QR=470;RO=16;RPL=0;RPP=35.5824;RPPR=37.7539;RPR=15;RUN=1;SAF=0;SAP=35.5824;SAR=15;SRF=0;SRP=37.7539;SRR=16;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:7:6,0,1:6:183:0,1:0,35:-1.39142,-3.1976,-17.8193,0,-14.9651,-14.6641 0|1:13:9,0,4:9:257:0,4:0,138:-8.84701,-11.5563,-31.9317,0,-20.702,-19.4979 1|1:10:1,2,7:1:30:2,7:62,237:-21.5246,-16.8551,-18.6468,-2.58825,0,-2.8763 1|1:3:0,0,3:0:0:0,3:0,105:-9.79616,-9.79616,-9.79616,-0.90309,-0.90309,0 dDocent_Contig_12248 111 . C G 1136.14 . AB=0.375;ABP=8.43898;AC=5;AF=0.625;AN=8;AO=48;CIGAR=1X;DP=77;DPB=77;DPRA=0;EPP=90.593;EPPR=6.67934;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.62069;PAO=0;PQA=0;PQR=0;PRO=0;QA=1564;QR=901;RO=29;RPL=0;RPP=107.241;RPPR=65.983;RPR=48;RUN=1;SAF=46;SAP=90.593;SAR=2;SRF=11;SRP=6.67934;SRR=18;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:9,3:9:296:3:103:-5.99766,0,-23.3487 1/1:37:4,33:4:119:33:1067:-85.3217,-0.13317,0 0/1:11:2,9:2:68:9:293:-23.3775,0,-3.1466 0/1:17:14,3:14:418:3:101:-4.30632,0,-32.7901 dDocent_Contig_12249 53 . C A 21247.5 . AB=0.361368;ABP=364.253;AC=4;AF=0.5;AN=8;AO=782;CIGAR=1X;DP=2164;DPB=2164;DPRA=0;EPP=1701.1;EPPR=3001.81;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.11022e-16;PAIRED=0.0242967;PAIREDR=0.0144823;PAO=0;PQA=0;PQR=0;PRO=0;QA=30944;QR=54533;RO=1381;RPL=782;RPP=1701.1;RPPR=3001.81;RPR=0;RUN=1;SAF=782;SAP=1701.1;SAR=0;SRF=1381;SRP=3001.81;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:553:292,260:292:11618:260:10299:-759.991,0,-878.56 0/1:509:400,109:400:15802:109:4336:-236.959,0,-1267.76 0/1:812:494,318:494:19428:318:12554:-884.541,0,-1502.53 0/1:290:195,95:195:7685:95:3755:-250.663,0,-603.955 dDocent_Contig_12250 10 . A G 2630.1 . AB=0.606742;ABP=11.8182;AC=5;AF=0.625;AN=8;AO=81;CIGAR=1X;DP=116;DPB=116;DPRA=0;EPP=178.9;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.962963;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3266;QR=1413;RO=35;RPL=0;RPP=178.9;RPPR=79.0118;RPR=81;RUN=1;SAF=81;SAP=178.9;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:27:0,27:0:0:27:1084:-97.8481,-8.12781,0 0/1:32:18,14:18:719:14:571:-42.0989,0,-55.4023 0/1:27:8,19:8:326:19:759:-60.5019,0,-21.5821 0/1:30:9,21:9:368:21:852:-67.959,0,-24.4545 dDocent_Contig_12251 8 . C A 41.9953 . AB=0.4;ABP=3.44459;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X;DP=34;DPB=34;DPRA=0.517241;EPP=7.35324;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=78;QR=1223;RO=32;RPL=0;RPP=7.35324;RPPR=72.4974;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:20:20,0:20:760:0:0:0,-6.0206,-68.7233 0/1:5:3,2:3:117:2:78:-5.89832,0,-9.40523 0/0:3:3,0:3:116:0:0:0,-0.90309,-10.8177 0/0:6:6,0:6:230:0:0:0,-1.80618,-21.0663 dDocent_Contig_12252 20 . G A 61.4547 . AB=0.0987654;ABP=229.54;AC=1;AF=0.125;AN=8;AO=19;CIGAR=1X;DP=492;DPB=492;DPRA=1.81143;EPP=44.2683;EPPR=1030.12;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.966173;PAO=0;PQA=0;PQR=0;PRO=0;QA=742;QR=18652;RO=473;RPL=0;RPP=44.2683;RPPR=1030.12;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=473;SRP=1030.12;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:162:146,16:146:5714:16:622:-7.54341,0,-465.331 0/0:155:152,3:152:6016:3:120:0,-35.4723,-530.052 0/0:105:105,0:105:4160:0:0:0,-31.6081,-374.379 0/0:70:70,0:70:2762:0:0:0,-21.0721,-248.697 dDocent_Contig_12253 15 . T A 3641.45 . AB=0.056338;ABP=124.399;AC=0;AF=0;AN=8;AO=4;CIGAR=2X2M1X;DP=215;DPB=215;DPRA=0;EPP=11.6962;EPPR=107.241;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=5.55112e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=158;QR=1882;RO=48;RPL=0;RPP=11.6962;RPPR=107.241;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:71:19,32,4,16:19:736:32,4,16:1248,158,625:-96.861,0,-50.8216,-89.5782,-47.452,-148.83,-51.203,-9.07621,-98.6561,-106.842 0|0:63:11,8,0,44:11:435:8,0,44:310,0,1678:-134.328,-112.171,-145.565,-137.639,-147.973,-173.441,0,-10.3396,-35.8036,-22.5583 0|0:42:10,12,0,20:10:399:12,0,20:475,0,776:-66.9692,-30.8829,-60.1357,-69.9795,-63.7481,-102.843,-6.22897,0,-39.092,-33.0714 0|0:39:8,13,0,18:8:312:13,0,18:519,0,713:-73.3845,-33.0457,-54.775,-75.7927,-58.6883,-101.436,-17.1104,0,-42.7515,-37.3329 dDocent_Contig_12255 44 . C A 194.373 . AB=0.219512;ABP=31.0276;AC=5;AF=0.625;AN=8;AO=10;CIGAR=1X;DP=42;DPB=42;DPRA=0;EPP=24.725;EPPR=48.8827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.71875;PAO=0;PQA=0;PQR=0;PRO=0;QA=392;QR=1272;RO=32;RPL=0;RPP=24.725;RPPR=72.4974;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=29;SRP=48.8827;SRR=3;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1:0,1:0:0:1:41:-4.09457,-0.30103,0 0/1:7:6,1:6:239:1:38:-1.69006,0,-19.7772 0/1:25:20,5:20:790:5:196:-10.4891,0,-63.8854 0/1:9:6,3:6:243:3:117:-8.20094,0,-19.5387 dDocent_Contig_12256 9 . T C 1241.26 . AB=0.693878;ABP=19.0083;AC=6;AF=0.75;AN=8;AO=41;CIGAR=1X;DP=56;DPB=56;DPRA=0;EPP=92.0407;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1565;QR=578;RO=15;RPL=0;RPP=92.0407;RPPR=35.5824;RPR=41;RUN=1;SAF=41;SAP=92.0407;SAR=0;SRF=15;SRP=35.5824;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:8,15:8:311:15:580:-45.6192,0,-21.4306 0/1:26:7,19:7:267:19:712:-56.5761,0,-16.5657 1/1:6:0,6:0:0:6:234:-21.4311,-1.80618,0 1/1:1:0,1:0:0:1:39:-3.89656,-0.30103,0 dDocent_Contig_12257 8 . C A 252.858 . AB=0.123457;ABP=102.764;AC=2;AF=0.25;AN=8;AO=10;CIGAR=2M1X2M7I1X;DP=114;DPB=144.333;DPRA=2.45455;EPP=24.725;EPPR=194.1;GTI=0;LEN=1;MEANALT=2.5;MQM=59;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0.988636;PAO=0;PQA=0;PQR=0;PRO=0;QA=389;QR=3403;RO=88;RPL=0;RPP=24.725;RPPR=194.1;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=88;SRP=194.1;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:56:36,12,8:36:1390:12,8:463,310:-26.6802,0,-110.544,-12.0521,-88.6939,-123.805 0|0:25:25,0,0:25:969:0,0:0,0:0,-7.52575,-87.5236,-7.52575,-87.5236,-87.5236 0|1:25:20,2,2:20:772:2,2:67,79:-0.487322,-1.11743,-63.9086,0,-58.0173,-62.8258 0|0:8:7,0,0:7:272:0,0:0,0:0,-2.10721,-24.4491,-2.10721,-24.4491,-24.4491 dDocent_Contig_12258 60 . G A 577.136 . AB=0.365079;ABP=12.9715;AC=3;AF=0.375;AN=8;AO=23;CIGAR=1X;DP=66;DPB=66;DPRA=7;EPP=52.9542;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=900;QR=1694;RO=43;RPL=23;RPP=52.9542;RPPR=96.3836;RPR=0;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:24,3:24:951:3:122:-3.24468,0,-77.7675 0/1:29:14,15:14:539:15:599:-45.5167,0,-40.1132 0/1:7:2,5:2:82:5:179:-14.3438,0,-5.67247 0/0:3:3,0:3:122:0:0:0,-0.90309,-11.3725 dDocent_Contig_12259 41 . T G 69.1821 . AB=0.266667;ABP=10.1038;AC=2;AF=0.25;AN=8;AO=4;CIGAR=1X;DP=35;DPB=35;DPRA=0.75;EPP=11.6962;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=156;QR=1169;RO=31;RPL=0;RPP=11.6962;RPPR=70.3259;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:16:16,0:16:597:0:0:0,-4.81648,-54.0615 0/1:11:8,3:8:310:3:115:-7.41188,0,-24.9522 0/0:4:4,0:4:149:0:0:0,-1.20412,-13.7728 0/1:4:3,1:3:113:1:41:-2.89045,0,-9.33518 dDocent_Contig_12261 15 . C T 143.206 . AB=0.130435;ABP=139.435;AC=4;AF=0.5;AN=8;AO=15;CIGAR=1X;DP=115;DPB=115;DPRA=0;EPP=35.5824;EPPR=220.158;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.85;PAO=0;PQA=0;PQR=0;PRO=0;QA=602;QR=4026;RO=100;RPL=0;RPP=35.5824;RPPR=220.158;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=100;SRP=220.158;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:59:51,8:51:2063:8:324:-11.7681,0,-168.087 0/1:25:22,3:22:894:3:121:-3.75424,0,-73.2395 0/1:19:17,2:17:669:2:75:-1.39923,0,-54.8179 0/1:12:10,2:10:400:2:82:-4.16732,0,-32.7472 dDocent_Contig_12262 55 . T C 1992.73 . AB=0.309091;ABP=90.0666;AC=4;AF=0.5;AN=8;AO=85;CIGAR=1X;DP=275;DPB=275;DPRA=0;EPP=187.585;EPPR=415.59;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3202;QR=6669;RO=190;RPL=85;RPP=187.585;RPPR=415.59;RPR=0;RUN=1;SAF=85;SAP=187.585;SAR=0;SRF=190;SRP=415.59;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:131:86,45:86:3014:45:1699:-113.727,0,-232.021 0/1:59:39,20:39:1390:20:746:-49.7017,0,-107.624 0/1:60:47,13:47:1661:13:498:-27.1056,0,-131.694 0/1:25:18,7:18:604:7:259:-16.1364,0,-47.1397 dDocent_Contig_12263 15 . C T 864.812 . AB=0.588235;ABP=6.45911;AC=4;AF=0.5;AN=8;AO=30;CIGAR=1X;DP=51;DPB=51;DPRA=0;EPP=68.1545;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.966667;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1197;QR=854;RO=21;RPL=0;RPP=68.1545;RPPR=48.6112;RPR=30;RUN=1;SAF=30;SAP=68.1545;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:7,10:7:285:10:395:-30.7881,0,-20.9069 0/1:17:9,8:9:366:8:321:-24.1395,0,-28.1871 0/1:12:4,8:4:162:8:317:-25.2797,0,-11.3546 0/1:5:1,4:1:41:4:164:-13.6447,0,-2.58942 dDocent_Contig_12264 8 . C G 881.766 . AB=0.327434;ABP=32.2387;AC=4;AF=0.5;AN=8;AO=37;CIGAR=1X;DP=113;DPB=113;DPRA=0;EPP=83.3548;EPPR=168.042;GTI=0;LEN=1;MEANALT=1;MQM=58.5405;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.945946;PAIREDR=0.934211;PAO=0;PQA=0;PQR=0;PRO=0;QA=1425;QR=2938;RO=76;RPL=0;RPP=83.3548;RPPR=168.042;RPR=37;RUN=1;SAF=37;SAP=83.3548;SAR=0;SRF=76;SRP=168.042;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:34:20,14:20:768:14:538:-38.4867,0,-59.213 0/1:25:16,9:16:619:9:345:-23.8818,0,-48.5242 0/1:36:27,9:27:1045:9:348:-20.7918,0,-83.5204 0/1:18:13,5:13:506:5:194:-12.4143,0,-40.4708 dDocent_Contig_12265 36 . G T 135.913 . AB=0.272727;ABP=12.8806;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=57;DPB=57;DPRA=1.88571;EPP=16.0391;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=0.960784;PAO=0;PQA=0;PQR=0;PRO=0;QA=236;QR=2032;RO=51;RPL=0;RPP=16.0391;RPPR=113.755;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:16,6:16:645:6:236:-14.9892,0,-51.7604 0/0:12:12,0:12:476:0:0:0,-3.61236,-43.1899 0/0:11:11,0:11:442:0:0:0,-3.31133,-40.1349 0/0:12:12,0:12:469:0:0:0,-3.61236,-42.5584 dDocent_Contig_12266 25 . G A 244.7 . AB=0.323529;ABP=12.2071;AC=2;AF=0.25;AN=8;AO=11;CIGAR=1X;DP=54;DPB=54;DPRA=1.7;EPP=26.8965;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.545455;PAIREDR=0.674419;PAO=0;PQA=0;PQR=0;PRO=0;QA=415;QR=1725;RO=43;RPL=0;RPP=26.8965;RPPR=96.3836;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:14,2:14:557:2:79:-2.68076,0,-45.6531 0/0:1:1,0:1:41:0:0:0,-0.30103,-4.09457 0/0:19:19,0:19:767:0:0:0,-5.71957,-69.3519 0/1:18:9,9:9:360:9:336:-25.1646,0,-27.3437 dDocent_Contig_12267 13 . G A 5722.31 . AB=0.843575;ABP=186.542;AC=5;AF=0.625;AN=8;AO=176;CIGAR=1X;DP=204;DPB=204;DPRA=0;EPP=385.189;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.9375;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7007;QR=1140;RO=28;RPL=0;RPP=385.189;RPPR=63.8115;RPR=176;RUN=1;SAF=176;SAP=385.189;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:76:11,65:11:447:65:2594:-210.716,0,-17.7067 0/1:81:14,67:14:570:67:2644:-213.71,0,-27.2582 1/1:25:0,25:0:0:25:1007:-90.9238,-7.52575,0 0/1:22:3,19:3:123:19:762:-62.2791,0,-4.84213 dDocent_Contig_12269 10 . A T 126.068 . AB=0.16;ABP=53.2147;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1M1X4M;DP=237;DPB=237.667;DPRA=0.802139;EPP=20.3821;EPPR=487.249;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0.636771;PAO=0;PQA=0;PQR=0;PRO=0;QA=323;QR=8737;RO=223;RPL=0;RPP=20.3821;RPPR=487.249;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=223;SRP=487.249;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:92:92,0,0:92:3609:0,0:0,0:0,-27.6948,-324.888,-27.6948,-324.888,-324.888 0|0:68:63,4,0:63:2471:4,0:148,0:0,-6.87364,-208.882,-18.9649,-210.086,-222.192 0|1:50:41,0,8:41:1608:0,8:0,323:-14.3058,-26.648,-158.879,0,-132.25,-129.842 0|0:27:27,0,0:27:1049:0,0:0,0:0,-8.12781,-94.7121,-8.12781,-94.7121,-94.7121 dDocent_Contig_12270 8 . C G 482.445 . AB=0.235294;ABP=13.3567;AC=1;AF=0.125;AN=8;AO=4;CIGAR=2X4M1X6M1X6M;DP=101;DPB=101;DPRA=0;EPP=11.6962;EPPR=137.642;GTI=0;LEN=1;MEANALT=4;MQM=53.25;MQMR=60;NS=4;NUMALT=4;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=156;QR=2446;RO=62;RPL=0;RPP=11.6962;RPPR=137.642;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:46:31,0,14,0,0:31:1219:0,14,0,0:0,394,0,0:-19.2992,-28.6311,-128.985,0,-100.265,-96.0505,-28.6311,-128.985,-100.265,-128.985,-28.6311,-128.985,-100.265,-128.985,-128.985 0|1:17:6,2,4,0,4:6:238:2,4,0,4:36,70,0,156:-11.047,-10.7745,-29.8108,-8.88731,-26.4493,-27.3102,-12.8532,-30.4128,-28.5143,-32.4944,0,-17.6124,-15.7217,-19.6911,-18.4869 0|0:20:10,0,8,2,0:10:391:0,8,2,0:0,291,78,0:-19.9059,-22.9162,-55.0775,0,-32.1466,-29.7384,-16.497,-48.6642,-25.735,-48.0621,-22.9162,-55.0775,-32.1466,-48.6642,-55.0775 0|0:18:15,0,3,0,0:15:598:0,3,0,0:0,116,0,0:-5.39031,-9.90576,-59.1638,0,-49.6461,-48.743,-9.90576,-59.1638,-49.6461,-59.1638,-9.90576,-59.1638,-49.6461,-59.1638,-59.1638 dDocent_Contig_12271 40 . T A 1374.73 . AB=0.257576;ABP=104.082;AC=3;AF=0.375;AN=8;AO=51;CIGAR=12M1X3M;DP=198;DPB=154.25;DPRA=0;EPP=113.755;EPPR=211.472;GTI=0;LEN=1;MEANALT=2.25;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.96875;PAO=0;PQA=0;PQR=0;PRO=0;QA=2065;QR=3765;RO=96;RPL=0;RPP=113.755;RPPR=211.472;RPR=51;RUN=1;SAF=51;SAP=113.755;SAR=0;SRF=96;SRP=211.472;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:46:20,12,14:20:791:12,14:418,571:-41.1214,-13.1867,-74.6653,0,-31.1625,-60.9131 0|1:71:35,15,20:35:1368:15,20:528,809:-56.2119,-26.3671,-134.319,0,-72.1269,-106.496 0|1:40:26,8,6:26:1016:8,6:274,242:-12.1755,-2.60435,-83.7107,0,-66.1687,-81.8059 0|0:41:15,15,11:15:590:15,11:494,443:-35.3622,0,-44.0119,-3.33458,-12.0113,-48.5879 dDocent_Contig_12272 15 . A T 77.9099 . AB=0.105263;ABP=28.7251;AC=1;AF=0.125;AN=8;AO=2;CIGAR=2X;DP=53;DPB=53;DPRA=2.53333;EPP=3.0103;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=46;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0.702128;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=1879;RO=47;RPL=0;RPP=7.35324;RPPR=105.07;RPR=2;RUN=1;SAF=1;SAP=3.0103;SAR=1;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:19:17,2,0:17:678:2,0:81,0:-1.76963,0,-55.6295,-6.88713,-56.2316,-62.7241 0|0:19:15,0,4:15:602:0,4:0,164:-9.43033,-13.9458,-63.5408,0,-50.0026,-48.7985 0|0:9:9,0,0:9:365:0,0:0,0:0,-2.70927,-33.2149,-2.70927,-33.2149,-33.2149 0|0:6:6,0,0:6:234:0,0:0,0:0,-1.80618,-21.4278,-1.80618,-21.4278,-21.4278 dDocent_Contig_12273 30 . T A 185.137 . AB=0.466667;ABP=3.15506;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=20;DPB=20;DPRA=1.5;EPP=18.2106;EPPR=31.2394;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=286;QR=519;RO=13;RPL=0;RPP=18.2106;RPPR=31.2394;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=13;SRP=31.2394;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:7,5:7:286:5:204:-15.1317,0,-22.5025 0/0:5:5,0:5:197:0:0:0,-1.50515,-18.1032 ./.:.:.:.:.:.:.:. 0/1:3:1,2:1:36:2:82:-6.87659,0,-2.69518 dDocent_Contig_12274 169 . A G 130.175 . AB=0.181818;ABP=41.702;AC=2;AF=0.25;AN=8;AO=8;CIGAR=1X;DP=49;DPB=49;DPRA=8.8;EPP=20.3821;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=321;QR=1382;RO=41;RPL=8;RPP=20.3821;RPPR=92.0407;RPR=0;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=92.0407;SRR=41;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:3:3,0:3:112:0:0:0,-0.90309,-10.4467 0/1:22:19,3:19:630:3:121:-4.65754,0,-50.3886 0/1:22:17,5:17:581:5:200:-11.7573,0,-45.9852 0/0:2:2,0:2:59:0:0:0,-0.60206,-5.60384 dDocent_Contig_12275 109 . C T 124.733 . AB=0.25;ABP=18.2106;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=78;DPB=78;DPRA=1.68;EPP=18.2106;EPPR=157.185;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=244;QR=2378;RO=71;RPL=0;RPP=18.2106;RPPR=157.185;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=157.185;SRR=71;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:21,7:21:704:7:244:-13.8712,0,-55.2456 0/0:10:10,0:10:344:0:0:0,-3.0103,-31.293 0/0:26:26,0:26:866:0:0:0,-7.82678,-78.2467 0/0:14:14,0:14:464:0:0:0,-4.21442,-42.0782 dDocent_Contig_12277 41 . C T 125.396 . AB=0.272727;ABP=12.8806;AC=2;AF=0.25;AN=8;AO=6;CIGAR=1X;DP=39;DPB=39;DPRA=1.29412;EPP=16.0391;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=242;QR=1289;RO=33;RPL=0;RPP=16.0391;RPPR=74.6689;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:8:5,3:5:194:3:122:-8.96425,0,-15.423 0/0:8:8,0:8:296:0:0:0,-2.40824,-26.9802 0/1:14:11,3:11:449:3:120:-6.97327,0,-36.5515 0/0:9:9,0:9:350:0:0:0,-2.70927,-31.8557 dDocent_Contig_12279 63 . A T 164.084 . AB=0.266667;ABP=17.1973;AC=2;AF=0.25;AN=8;AO=9;CIGAR=1X3M1X;DP=74;DPB=74;DPRA=3.19048;EPP=22.5536;EPPR=135.47;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=341;QR=2247;RO=61;RPL=9;RPP=22.5536;RPPR=135.47;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=61;SRP=135.47;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:7:7,0,0:7:258:0,0:0,0:0,-2.10721,-23.5735,-2.10721,-23.5735,-23.5735 0|0:37:36,0,1:36:1320:0,1:0,38:0,-10.8371,-118.705,-7.34084,-115.588,-115.287 0|1:13:11,0,2:11:406:0,2:0,76:-3.30142,-6.61275,-39.8067,0,-33.572,-32.97 0|1:17:7,4,6:7:263:4,6:153,227:-16.4995,-6.04965,-26.3904,0,-8.98413,-19.7358 dDocent_Contig_12280 122 . T C 170.048 . AB=0.363636;ABP=6.56362;AC=1;AF=0.125;AN=8;AO=8;CIGAR=4M1X6M;DP=43;DPB=43.3636;DPRA=3.14286;EPP=20.3821;EPPR=70.3259;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=268;QR=1025;RO=31;RPL=0;RPP=20.3821;RPPR=70.3259;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=70.3259;SRR=31;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:12:12,0,0:12:406:0,0:0,0:0,-3.61236,-36.8665,-3.61236,-36.8665,-36.8665 0|1:22:10,4,8:10:326:4,8:128,268:-18.7034,-11.4066,-36.5177,0,-16.0141,-23.9163 0|0:6:6,0,0:6:195:0,0:0,0:0,-1.80618,-17.8694,-1.80618,-17.8694,-17.8694 0|0:3:3,0,0:3:98:0,0:0,0:0,-0.90309,-9.14433,-0.90309,-9.14433,-9.14433 dDocent_Contig_12281 14 . G T 35.4767 . AB=0.25;ABP=7.35324;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=28;DPB=28;DPRA=0.8;EPP=7.35324;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=1037;RO=26;RPL=0;RPP=7.35324;RPPR=59.4686;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:6:6,0:6:242:0:0:0,-1.80618,-22.1569 0/1:8:6,2:6:235:2:82:-5.37144,0,-19.1114 0/0:14:14,0:14:560:0:0:0,-4.21442,-50.742 ./.:.:.:.:.:.:.:. dDocent_Contig_12284 14 . A T 120.185 . AB=0.294118;ABP=9.26925;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=70;DPB=70;DPRA=0.962264;EPP=13.8677;EPPR=144.156;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.461538;PAO=0;PQA=0;PQR=0;PRO=0;QA=205;QR=2601;RO=65;RPL=0;RPP=13.8677;RPPR=144.156;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=65;SRP=144.156;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:21:21,0:21:851:0:0:0,-6.32163,-76.9015 0/0:14:14,0:14:559:0:0:0,-4.21442,-50.6539 0/1:17:12,5:12:481:5:205:-13.7175,0,-38.5228 0/0:18:18,0:18:710:0:0:0,-5.41854,-64.2225 dDocent_Contig_12285 9 . G A 228.51 . AB=0.230769;ABP=35.7494;AC=2;AF=0.25;AN=8;AO=12;CIGAR=1X;DP=131;DPB=131;DPRA=0.658228;EPP=29.068;EPPR=252.803;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.958;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.966387;PAO=0;PQA=0;PQR=0;PRO=0;QA=458;QR=4523;RO=119;RPL=0;RPP=29.068;RPPR=261.416;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=118;SRP=252.803;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:39:39,0:39:1481:0:0:0,-11.7402,-133.567 0/0:40:40,0:40:1509:0:0:0,-12.0412,-136.078 0/1:29:26,3:26:1001:3:113:-1.8091,0,-81.6677 0/1:23:14,9:14:532:9:345:-24.4851,0,-41.2979 dDocent_Contig_12287 30 . G T 147.217 . AB=0.21875;ABP=24.9965;AC=1;AF=0.125;AN=8;AO=11;CIGAR=1X;DP=155;DPB=155;DPRA=1.92453;EPP=26.8965;EPPR=315.702;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=437;QR=5529;RO=144;RPL=0;RPP=26.8965;RPPR=315.702;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=144;SRP=315.702;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:32:25,7:25:953:7:282:-16.1196,0,-76.43 0/0:17:17,0:17:646:0:0:0,-5.11751,-58.4561 0/0:36:36,0:36:1355:0:0:0,-10.8371,-122.212 0/0:70:66,4:66:2575:4:155:0,-6.74786,-217.582 dDocent_Contig_12290 33 . C T 48.5941 . AB=0.136364;ABP=53.5464;AC=2;AF=0.25;AN=8;AO=7;CIGAR=1X;DP=92;DPB=92;DPRA=1;EPP=18.2106;EPPR=187.585;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.857143;PAIREDR=0.964706;PAO=0;PQA=0;PQR=0;PRO=0;QA=262;QR=3280;RO=85;RPL=0;RPP=18.2106;RPPR=187.585;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=85;SRP=187.585;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:37:32,5:32:1244:5:189:-6.23659,0,-101.111 0/0:23:23,0:23:883:0:0:0,-6.92369,-79.7874 0/0:25:24,1:24:919:1:39:0,-3.62919,-79.1292 0/1:7:6,1:6:234:1:34:-1.2917,0,-19.3236 dDocent_Contig_12292 22 . T A 11477 . AB=0.843636;ABP=285.073;AC=6;AF=0.75;AN=8;AO=351;CIGAR=1X;DP=398;DPB=398;DPRA=0;EPP=765.197;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=59.3846;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.518519;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=13913;QR=1893;RO=47;RPL=0;RPP=765.197;RPPR=105.07;RPR=351;RUN=1;SAF=351;SAP=765.197;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:161:25,136:25:996:136:5413:-437.912,0,-41.4637 0/1:114:18,96:18:734:96:3734:-301.777,0,-32.0653 1/1:81:3,78:3:122:78:3128:-269.884,-13.0109,0 1/1:42:1,41:1:41:41:1638:-141.529,-8.54869,0 dDocent_Contig_12294 19 . G A 6350.38 . AB=0.503513;ABP=3.05607;AC=4;AF=0.5;AN=8;AO=215;CIGAR=1X;DP=427;DPB=427;DPRA=0;EPP=469.877;EPPR=463.362;GTI=0;LEN=1;MEANALT=1;MQM=59.7814;MQMR=59.1509;NS=4;NUMALT=1;ODDS=0;PAIRED=0.739535;PAIREDR=0.613208;PAO=0;PQA=0;PQR=0;PRO=0;QA=8561;QR=8464;RO=212;RPL=0;RPP=469.877;RPPR=463.362;RPR=215;RUN=1;SAF=215;SAP=469.877;SAR=0;SRF=212;SRP=463.362;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:140:74,66:74:2970:66:2614:-193.078,0,-225.243 0/1:98:43,55:43:1723:55:2192:-167.94,0,-121.698 0/1:108:63,45:63:2489:45:1815:-131.042,0,-191.651 0/1:81:32,49:32:1282:49:1940:-150.376,0,-90.4538 dDocent_Contig_12295 9 . G A 76.1375 . AB=0.172414;ABP=30.0414;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=68;DPB=68;DPRA=2.23077;EPP=13.8677;EPPR=139.813;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=193;QR=2407;RO=63;RPL=0;RPP=13.8677;RPPR=139.813;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=63;SRP=139.813;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:24,5:24:912:5:193:-9.01162,0,-73.6665 0/0:20:20,0:20:767:0:0:0,-6.0206,-69.3581 0/0:4:4,0:4:155:0:0:0,-1.20412,-14.3254 0/0:15:15,0:15:573:0:0:0,-4.51545,-51.9109 dDocent_Contig_12297 18 . C T 268.035 . AB=0.357143;ABP=7.97367;AC=1;AF=0.125;AN=8;AO=10;CIGAR=1X;DP=72;DPB=72;DPRA=1.90909;EPP=24.725;EPPR=137.642;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=403;QR=2489;RO=62;RPL=0;RPP=24.725;RPPR=137.642;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:18,10:18:714:10:403:-28.2014,0,-56.1506 0/0:25:25,0:25:1011:0:0:0,-7.52575,-91.2804 0/0:13:13,0:13:521:0:0:0,-3.91339,-47.2358 0/0:6:6,0:6:243:0:0:0,-1.80618,-22.2476 dDocent_Contig_12298 42 . C T 30.3113 . AB=0.285714;ABP=5.80219;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=47;DPB=47;DPRA=0.740741;EPP=3.73412;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.931818;PAO=0;PQA=0;PQR=0;PRO=0;QA=105;QR=1700;RO=44;RPL=1;RPP=3.73412;RPPR=98.5551;RPR=2;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:18:18,0:18:695:0:0:0,-5.41854,-62.8775 0/0:13:12,1:12:460:1:33:0,-0.614255,-38.4472 0/0:9:9,0:9:355:0:0:0,-2.70927,-32.3118 0/1:7:5,2:5:190:2:72:-4.72943,0,-15.3565 dDocent_Contig_12300 25 . T C 52.4223 . AB=0.2;ABP=14.7363;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=30;DPB=30;DPRA=2;EPP=9.52472;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=121;QR=1058;RO=27;RPL=0;RPP=9.52472;RPPR=61.6401;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:12,3:12:477:3:121:-6.76475,0,-38.7663 0/0:13:13,0:13:510:0:0:0,-3.91339,-46.2469 0/0:2:2,0:2:71:0:0:0,-0.60206,-6.74038 ./.:.:.:.:.:.:.:. dDocent_Contig_12301 9 . G A 60.8711 . AB=0.133333;ABP=55.5599;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X3M1X2M1X;DP=136;DPB=136;DPRA=1.48352;EPP=16.0391;EPPR=285.302;GTI=0;LEN=1;MEANALT=1;MQM=59.3333;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=233;QR=5026;RO=130;RPL=0;RPP=16.0391;RPPR=285.302;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=130;SRP=285.302;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:48:48,0:48:1865:0:0:0,-14.4494,-168.084 0|1:45:39,6:39:1485:6:233:-7.78608,0,-120.373 0|0:32:32,0:32:1243:0:0:0,-9.63296,-112.156 0|0:11:11,0:11:433:0:0:0,-3.31133,-39.3256 dDocent_Contig_12302 9 . G A 96.894 . AB=0.057971;ABP=120.112;AC=0;AF=0;AN=8;AO=4;CIGAR=1X3M1X;DP=99;DPB=99;DPRA=2.3;EPP=11.6962;EPPR=187.585;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=59.8941;NS=4;NUMALT=2;ODDS=0;PAIRED=0.5;PAIREDR=0.211765;PAO=0;PQA=0;PQR=0;PRO=0;QA=155;QR=3298;RO=85;RPL=0;RPP=11.6962;RPPR=187.585;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=85;SRP=187.585;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:36:30,2,4:30:1170:2,4:78,162:-4.33733,-6.96142,-102.52,0,-89.7618,-94.9694 0|0:12:12,0,0:12:465:0,0:0,0:0,-3.61236,-42.1985,-3.61236,-42.1985,-42.1985 0|0:33:26,2,5:26:1001:2,5:77,201:-8.74946,-10.2587,-91.8312,0,-75.8664,-80.6836 0|0:18:17,0,1:17:662:0,1:0,41:0,-5.11751,-59.4906,-1.32397,-56.1054,-55.8043 dDocent_Contig_12303 8 . C T 1800.12 . AB=0.0888889;ABP=69.0713;AC=0;AF=0;AN=8;AO=4;CIGAR=2X;DP=137;DPB=137;DPRA=0;EPP=3.0103;EPPR=110.694;GTI=0;LEN=1;MEANALT=2;MQM=48.25;MQMR=55.3934;NS=4;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=0.803279;PAO=0;PQA=0;PQR=0;PRO=0;QA=138;QR=2322;RO=61;RPL=0;RPP=11.6962;RPPR=135.47;RPR=4;RUN=1;SAF=2;SAP=3.0103;SAR=2;SRF=58;SRP=110.694;SRR=3;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:45:21,4,0,20:21:799:4,0,20:138,0,747:-53.6233,-48.8092,-109.265,-59.945,-110.469,-121.607,0,-50.5405,-61.6774,-55.6568 0|0:40:14,0,0,26:14:536:0,0,26:0,0,906:-66.86,-71.0745,-114.821,-71.0745,-114.821,-114.821,0,-44.1119,-44.1119,-36.2851 0|0:31:14,0,2,15:14:533:0,2,15:0,77,575:-42.7426,-46.957,-84.5842,-40.9809,-78.6057,-78.0037,0,-37.6193,-31.6372,-33.1039 0|0:21:12,0,0,9:12:454:0,0,9:0,0,337:-24.1835,-27.7959,-65.0173,-27.7959,-65.0173,-65.0173,0,-37.596,-37.596,-34.8868 dDocent_Contig_12304 9 . G A 4550.79 . AB=0.663636;ABP=28.5942;AC=5;AF=0.625;AN=8;AO=151;CIGAR=1X;DP=195;DPB=195;DPRA=0;EPP=330.903;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5749;QR=1693;RO=44;RPL=0;RPP=330.903;RPPR=98.5551;RPR=151;RUN=1;SAF=151;SAP=330.903;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:53:28,25:28:1070:25:941:-69.0469,0,-80.6499 1/1:85:7,78:7:273:78:2967:-242.26,-0.649538,0 0/1:9:4,5:4:156:5:191:-14.8493,0,-11.708 0/1:48:5,43:5:194:43:1650:-134.316,0,-3.3834 dDocent_Contig_12305 40 . T A 53.9897 . AB=0.166667;ABP=26.1727;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=56;DPB=56;DPRA=2.25;EPP=11.6962;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=155;QR=1957;RO=52;RPL=0;RPP=11.6962;RPPR=115.927;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:12:12,0:12:435:0:0:0,-3.61236,-39.4832 0/0:9:9,0:9:322:0:0:0,-2.70927,-29.3184 0/1:24:20,4:20:765:4:155:-7.09793,0,-61.9447 0/0:11:11,0:11:435:0:0:0,-3.31133,-39.5054 dDocent_Contig_12307 62 . A G 120.748 . AB=0.169492;ABP=58.9901;AC=3;AF=0.375;AN=8;AO=10;CIGAR=1X;DP=89;DPB=89;DPRA=0.655556;EPP=24.725;EPPR=141.572;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.9;PAIREDR=0.860759;PAO=0;PQA=0;PQR=0;PRO=0;QA=379;QR=2957;RO=79;RPL=10;RPP=24.725;RPPR=174.557;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=75;SRP=141.572;SRR=4;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:11,4:11:420:4:147:-9.07409,0,-33.6357 0/0:30:30,0:30:1137:0:0:0,-9.0309,-102.625 0/1:14:12,2:12:446:2:78:-3.18905,0,-36.2675 0/1:30:26,4:26:954:4:154:-5.20256,0,-77.1291 dDocent_Contig_12308 12 . C T 238.355 . AB=0.154472;ABP=130.562;AC=4;AF=0.5;AN=8;AO=19;CIGAR=1X;DP=123;DPB=123;DPRA=0;EPP=44.2683;EPPR=228.843;GTI=0;LEN=1;MEANALT=1;MQM=58.7368;MQMR=58.9231;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=0.932692;PAO=0;PQA=0;PQR=0;PRO=0;QA=748;QR=4157;RO=104;RPL=0;RPP=44.2683;RPPR=228.843;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=104;SRP=228.843;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:76:68,8:68:2720:8:307:-5.10591,0,-220.044 0/1:23:18,5:18:726:5:204:-11.2556,0,-58.7399 0/1:17:14,3:14:552:3:118:-5.88407,0,-44.6055 0/1:7:4,3:4:159:3:119:-8.9878,0,-12.5836 dDocent_Contig_12309 21 . C A 2041.13 . AB=0.534884;ABP=4.37378;AC=4;AF=0.5;AN=8;AO=69;CIGAR=1X;DP=129;DPB=129;DPRA=0;EPP=152.842;EPPR=133.299;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=0.565217;PAIREDR=0.583333;PAO=0;PQA=0;PQR=0;PRO=0;QA=2767;QR=2402;RO=60;RPL=0;RPP=152.842;RPPR=133.299;RPR=69;RUN=1;SAF=69;SAP=152.842;SAR=0;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:14,11:14:563:11:438:-32.2465,0,-43.4868 0/1:40:15,25:15:610:25:1003:-78.5238,0,-43.1966 0/1:35:17,18:17:665:18:719:-54.502,0,-49.6406 0/1:29:14,15:14:564:15:607:-46.239,0,-42.3735 dDocent_Contig_12310 11 . T C 509.953 . AB=0.413043;ABP=6.03148;AC=3;AF=0.375;AN=8;AO=19;CIGAR=1X;DP=51;DPB=51;DPRA=3.06667;EPP=44.2683;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.263158;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=768;QR=1283;RO=32;RPL=0;RPP=44.2683;RPPR=72.4974;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:9,3:9:363:3:118:-7.38922,0,-29.4208 0/1:21:8,13:8:314:13:528:-41.5449,0,-22.2998 0/1:13:10,3:10:402:3:122:-7.4591,0,-32.6265 0/0:5:5,0:5:204:0:0:0,-1.50515,-18.744 dDocent_Contig_12311 41 . C T 236.369 . AB=0.0967742;ABP=178.129;AC=2;AF=0.25;AN=8;AO=15;CIGAR=1X5M;DP=172;DPB=172;DPRA=0;EPP=35.5824;EPPR=280.959;GTI=0;LEN=1;MEANALT=3.5;MQM=60;MQMR=60;NS=4;NUMALT=4;ODDS=0;PAIRED=0.333333;PAIREDR=0.710938;PAO=0;PQA=0;PQR=0;PRO=0;QA=597;QR=5011;RO=128;RPL=0;RPP=35.5824;RPPR=280.959;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=128;SRP=280.959;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:59:47,0,5,3,3:47:1835:0,5,3,3:0,192,120,107:-1.61125,-15.7597,-166.609,0,-150.85,-149.345,-5.86946,-156.724,-140.965,-155.821,-7.04844,-157.891,-142.132,-148.005,-156.988 0|0:48:39,0,3,2,3:39:1529:0,3,2,3:0,121,82,122:0,-11.7402,-137.471,-1.76482,-127.496,-126.593,-4.96949,-130.702,-120.728,-130.1,-1.67417,-127.407,-117.432,-120.638,-126.504 0|0:53:36,4,4,0,9:36:1417:4,4,0,9:148,162,0,359:-18.7338,-17.4724,-132.831,-16.2092,-120.676,-131.575,-29.5709,-134.035,-132.779,-146.138,0,-104.469,-103.213,-116.572,-113.863 0|1:12:6,0,3,0,2:6:230:0,3,0,2:0,122,0,81:-8.25871,-10.0649,-28.9308,0,-18.8634,-17.9603,-10.0649,-28.9308,-18.8634,-28.9308,-3.38573,-22.2495,-12.18,-22.2495,-21.6474 dDocent_Contig_12313 22 . C A 712.401 . AB=0.793103;ABP=24.6501;AC=1;AF=0.125;AN=8;AO=23;CIGAR=1X;DP=43;DPB=43;DPRA=6.21429;EPP=52.9542;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.95;PAO=0;PQA=0;PQR=0;PRO=0;QA=904;QR=800;RO=20;RPL=0;RPP=52.9542;RPPR=46.4397;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:4:4,0:4:156:0:0:0,-1.20412,-14.4149 0/1:29:6,23:6:238:23:904:-72.9385,0,-13.0611 0/0:1:1,0:1:41:0:0:0,-0.30103,-4.09457 0/0:9:9,0:9:365:0:0:0,-2.70927,-33.2145 dDocent_Contig_12314 28 . G A 81.5223 . AB=0.142857;ABP=34.0313;AC=4;AF=0.5;AN=8;AO=5;CIGAR=2M1X6M1X3M;DP=54;DPB=54;DPRA=0.484848;EPP=13.8677;EPPR=89.8692;GTI=0;LEN=1;MEANALT=2.66667;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.95;PAO=0;PQA=0;PQR=0;PRO=0;QA=200;QR=1515;RO=40;RPL=0;RPP=13.8677;RPPR=89.8692;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:22:22,0,0:22:823:0,0:0,0:0,-6.62266,-74.3904,-6.62266,-74.3904,-74.3904 0|1:21:17,0,3:17:654:0,3:0,122:-5.00292,-10.1204,-63.811,0,-53.7442,-52.8411 1|1:4:0,2,1:0:0:2,1:74,41:-3.74502,-3.62717,-3.02511,-0.30103,-0.243087,0 0|1:7:1,4,1:1:38:4,1:154,37:-2.76802,-2.69295,-4.60561,0,-2.78741,-2.85917 dDocent_Contig_12315 1 . N G 183.797 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=5;CIGAR=1X;DP=5;DPB=5;DPRA=0;EPP=13.8677;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=8.07091;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=200;QR=0;RO=0;RPL=0;RPP=13.8677;RPPR=0;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:5:0,5:0:0:5:200:-18.3795,-1.50515,0 ./.:.:.:.:.:.:.:. dDocent_Contig_12316 89 . T A 197.313 . AB=0.392857;ABP=5.80219;AC=4;AF=0.5;AN=8;AO=13;CIGAR=1X;DP=42;DPB=42;DPRA=0;EPP=31.2394;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=330;QR=774;RO=29;RPL=13;RPP=31.2394;RPPR=65.983;RPR=0;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:9,10:9:235:10:261:-18.0265,0,-15.6891 0/0:13:12,1:12:335:1:7:0,-3.21339,-29.7234 0/1:9:8,1:8:204:1:31:-0.390184,0,-15.9033 1/1:1:0,1:0:0:1:31:-3.09945,-0.30103,0 dDocent_Contig_12317 29 . T C 992.467 . AB=0.410714;ABP=6.88793;AC=4;AF=0.5;AN=8;AO=34;CIGAR=2X;DP=90;DPB=90;DPRA=0;EPP=76.8404;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1357;QR=2239;RO=56;RPL=0;RPP=76.8404;RPPR=124.613;RPR=34;RUN=1;SAF=34;SAP=76.8404;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:11:2,9:2:79:9:354:-28.9085,0,-4.18591 1|1:10:0,10:0:0:10:404:-36.7202,-3.0103,0 0|1:45:31,14:31:1244:14:558:-37.0152,0,-98.686 0|0:24:23,1:23:916:1:41:0,-3.13015,-78.6524 dDocent_Contig_12318 11 . C T 950.177 . AB=0.377953;ABP=19.4417;AC=3;AF=0.375;AN=8;AO=56;CIGAR=1X;DP=212;DPB=212;DPRA=0;EPP=124.613;EPPR=341.76;GTI=0;LEN=1;MEANALT=1;MQM=37.6607;MQMR=58.8269;NS=4;NUMALT=1;ODDS=0;PAIRED=0.285714;PAIREDR=0.948718;PAO=0;PQA=0;PQR=0;PRO=0;QA=2192;QR=6142;RO=156;RPL=0;RPP=124.613;RPPR=341.76;RPR=56;RUN=1;SAF=56;SAP=124.613;SAR=0;SRF=156;SRP=341.76;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:85:77,8:77:3032:8:322:0,-6.47408,-253.138 0/1:48:26,22:26:1021:22:858:-50.1544,0,-75.7473 0/1:46:33,13:33:1290:13:498:-22.3107,0,-101.537 0/1:33:20,13:20:799:13:514:-27.9506,0,-61.9797 dDocent_Contig_12319 12 . C T 557.979 . AB=0.425532;ABP=5.27418;AC=2;AF=0.25;AN=8;AO=23;CIGAR=1X;DP=131;DPB=131;DPRA=0.637037;EPP=52.9542;EPPR=237.529;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=927;QR=4340;RO=108;RPL=0;RPP=52.9542;RPPR=237.529;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=108;SRP=237.529;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:39:36,3:36:1446:3:120:0,-0.55286,-119.201 0/0:45:45,0:45:1799:0:0:0,-13.5463,-162.112 0/1:31:17,14:17:686:14:570:-42.31,0,-52.7353 0/1:16:10,6:10:409:6:237:-16.8855,0,-32.3541 dDocent_Contig_12320 185 . C A 617.16 . AB=0.485714;ABP=3.07234;AC=5;AF=0.625;AN=8;AO=22;CIGAR=1X;DP=40;DPB=40;DPRA=0;EPP=50.7827;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=847;QR=726;RO=18;RPL=22;RPP=50.7827;RPPR=42.0968;RPR=0;RUN=1;SAF=0;SAP=50.7827;SAR=22;SRF=0;SRP=42.0968;SRR=18;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:5,10:5:202:10:410:-32.7451,0,-14.0464 0/1:10:6,4:6:241:4:146:-10.483,0,-19.056 0/1:10:7,3:7:283:3:115:-7.7138,0,-22.8333 1/1:5:0,5:0:0:5:176:-16.172,-1.50515,0 dDocent_Contig_12321 84 . T G 71.4481 . AB=0.2;ABP=26.4622;AC=2;AF=0.25;AN=8;AO=6;CIGAR=1X;DP=58;DPB=58;DPRA=1.07143;EPP=16.0391;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=209;QR=1830;RO=52;RPL=6;RPP=16.0391;RPPR=115.927;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:11,4:11:370:4:139:-8.33724,0,-29.1086 0/0:23:23,0:23:816:0:0:0,-6.92369,-73.7622 0/1:15:13,2:13:465:2:70:-2.13195,0,-37.6728 0/0:5:5,0:5:179:0:0:0,-1.50515,-16.4604 dDocent_Contig_12322 19 . T C 50.6141 . AB=0.131579;ABP=47.8112;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=56;DPB=56;DPRA=0;EPP=16.0391;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.333333;PAIREDR=0.98;PAO=0;PQA=0;PQR=0;PRO=0;QA=242;QR=2021;RO=50;RPL=0;RPP=16.0391;RPPR=111.584;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:18:17,1:17:685:1:41:0,-1.32397,-57.8849 0/1:24:22,2:22:893:2:82:-0.554958,0,-73.4517 0/1:14:11,3:11:443:3:119:-6.88008,0,-36.0109 ./.:.:.:.:.:.:.:. dDocent_Contig_12323 184 . C A 125.699 . AB=0.188679;ABP=47.6279;AC=2;AF=0.25;AN=8;AO=10;CIGAR=1X;DP=66;DPB=66;DPRA=4.07692;EPP=24.725;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=51.6;MQMR=51.1786;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.982143;PAO=0;PQA=0;PQR=0;PRO=0;QA=349;QR=2177;RO=56;RPL=10;RPP=24.725;RPPR=124.613;RPR=0;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=124.613;SRR=56;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:32:26,6:26:989:6:193:-7.94889,0,-76.531 0/1:21:17,4:17:683:4:156:-8.01878,0,-55.0687 0/0:10:10,0:10:387:0:0:0,-3.0103,-34.9833 0/0:3:3,0:3:118:0:0:0,-0.90309,-10.9479 dDocent_Contig_12324 42 . G T 69.7926 . AB=0.428571;ABP=3.32051;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1M1D1M1X;DP=35;DPB=34.25;DPRA=0.5;EPP=9.52472;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=117;QR=1247;RO=32;RPL=0;RPP=9.52472;RPPR=72.4974;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:18:18,0:18:710:0:0:0,-5.41854,-64.2299 .:.:.:.:.:.:.:. 0|1:7:4,3:4:153:3:117:-8.80317,0,-12.0333 0|0:10:10,0:10:384:0:0:0,-3.0103,-34.9055 dDocent_Contig_12326 37 . C A 63.7568 . AB=0.139535;ABP=51.5402;AC=2;AF=0.25;AN=8;AO=6;CIGAR=1X;DP=59;DPB=59;DPRA=2.6875;EPP=16.0391;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=241;QR=2122;RO=53;RPL=0;RPP=16.0391;RPPR=118.098;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:9:9,0:9:365:0:0:0,-2.70927,-33.2145 0/1:20:18,2:18:725:2:79:-1.47664,0,-59.5549 0/1:23:19,4:19:764:4:162:-8.04327,0,-62.1585 0/0:7:7,0:7:268:0:0:0,-2.10721,-24.4784 dDocent_Contig_12327 48 . G T 36.8645 . AB=0.0625;ABP=322.217;AC=0;AF=0;AN=8;AO=18;CIGAR=1X3M2X2M1X;DP=278;DPB=278;DPRA=0;EPP=42.0968;EPPR=513.306;GTI=0;LEN=1;MEANALT=2.5;MQM=10.2222;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0.991489;PAO=0;PQA=0;PQR=0;PRO=0;QA=694;QR=9091;RO=235;RPL=18;RPP=42.0968;RPPR=513.306;RPR=0;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=235;SRP=513.306;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:116:95,7,10:95:3666:7,10:271,381:-2.7351,-26.6971,-325.645,0,-296.503,-298.201 0|0:76:63,5,7:63:2441:5,7:193,281:-4.32918,-20.8707,-219.881,0,-198.231,-198.645 0|0:50:44,3,2:44:1689:3,2:113,82:0,-11.6956,-149.401,-6.39811,-143.535,-144.62 0|0:36:33,3,0:33:1295:3,0:117,0:0,-7.66626,-113.662,-9.93399,-114.565,-116.696 dDocent_Contig_12328 14 . G C 292.484 . AB=0.46875;ABP=3.28173;AC=3;AF=0.5;AN=6;AO=15;CIGAR=1X;DP=32;DPB=32;DPRA=0;EPP=35.5824;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=35.0667;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=612;QR=652;RO=17;RPL=0;RPP=35.5824;RPPR=39.9253;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:10,7:10:380:7:285:-14.3276,0,-29.4292 0/1:6:1,5:1:41:5:204:-12.5024,0,-2.28839 0/1:9:6,3:6:231:3:123:-7.87255,0,-18.4456 ./.:.:.:.:.:.:.:. dDocent_Contig_12329 11 . T C 239.528 . AB=0.156522;ABP=120.855;AC=2;AF=0.25;AN=8;AO=18;CIGAR=1X;DP=120;DPB=120;DPRA=23;EPP=42.0968;EPPR=224.5;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=679;QR=3937;RO=102;RPL=0;RPP=42.0968;RPPR=224.5;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=102;SRP=224.5;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:84:69,15:69:2667:15:558:-25.2633,0,-214.91 0/1:31:28,3:28:1083:3:121:-1.94827,0,-88.4323 0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83591 0/0:3:3,0:3:115:0:0:0,-0.90309,-10.725 dDocent_Contig_12330 147 . C T 499.934 . AB=0.446809;ABP=4.16534;AC=3;AF=0.375;AN=8;AO=21;CIGAR=1X;DP=56;DPB=56;DPRA=1.74074;EPP=48.6112;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=761;QR=1270;RO=35;RPL=0;RPP=48.6112;RPPR=79.0118;RPR=21;RUN=1;SAF=0;SAP=48.6112;SAR=21;SRF=0;SRP=79.0118;SRR=35;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:3,6:3:109:6:210:-16.5321,0,-7.45873 0/0:9:9,0:9:322:0:0:0,-2.70927,-29.323 0/1:21:9,12:9:329:12:440:-33.6228,0,-23.6376 0/1:17:14,3:14:510:3:111:-5.23641,0,-41.1217 dDocent_Contig_12331 12 . G C 242.979 . AB=0.244898;ABP=30.7077;AC=3;AF=0.375;AN=8;AO=12;CIGAR=1X;DP=58;DPB=58;DPRA=1.81481;EPP=29.068;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.913043;PAO=0;PQA=0;PQR=0;PRO=0;QA=481;QR=1842;RO=46;RPL=0;RPP=29.068;RPPR=102.898;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:8:5,3:5:199:3:123:-9.05655,0,-15.8803 0/0:9:9,0:9:357:0:0:0,-2.70927,-32.4914 0/1:16:13,3:13:523:3:120:-6.37121,0,-42.6005 0/1:25:19,6:19:763:6:238:-14.268,0,-61.4656 dDocent_Contig_12332 15 . G A 1163.67 . AB=0.239669;ABP=74.2382;AC=3;AF=0.375;AN=8;AO=29;CIGAR=2M1X1M;DP=121;DPB=121;DPRA=0;EPP=65.983;EPPR=120.27;GTI=0;LEN=1;MEANALT=3.25;MQM=60;MQMR=60;NS=4;NUMALT=5;ODDS=2.77556e-17;PAIRED=1;PAIREDR=0.759259;PAO=0;PQA=0;PQR=0;PRO=0;QA=1169;QR=2111;RO=54;RPL=0;RPP=65.983;RPPR=120.27;RPR=29;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:38:25,0,5,3,5,0:25:979:0,5,3,5,0:0,200,114,205,0:-9.40132,-16.9271,-97.4096,-0.451177,-80.9334,-79.4282,-7.5841,-88.0622,-71.586,-87.1591,0,-80.4869,-64.01,-71.1393,-78.9817,-16.9271,-97.4096,-80.9334,-88.0622,-80.4869,-97.4096 0|1:39:13,3,0,4,16,2:13:507:3,0,4,16,2:116,0,162,641,70:-48.8982,-43.2859,-84.0529,-52.8116,-84.956,-94.4823,-39.4517,-71.5964,-81.1227,-79.9186,0,-32.1468,-41.6733,-28.3117,-36.8568,-47.1218,-79.2649,-88.791,-75.4316,-35.9834,-88.1889 0|0:35:14,0,3,16,2,0:14:545:0,3,16,2,0:0,117,610,79,0:-45.8132,-50.0276,-94.8139,-40.4091,-85.196,-84.293,0,-44.7821,-35.1646,-39.9656,-43.5259,-88.3128,-78.6948,-38.2809,-87.7107,-50.0276,-94.8139,-85.196,-44.7821,-88.3128,-94.8139 0|1:9:2,0,0,1,6,0:2:80:0,0,1,6,0:0,0,30,244,0:-19.6155,-20.2175,-26.8094,-20.2175,-26.8094,-26.8094,-17.8341,-24.4224,-24.4224,-24.1214,0,-6.65636,-6.65636,-4.29098,-4.85018,-20.2175,-26.8094,-26.8094,-24.4224,-6.65636,-26.8094 dDocent_Contig_12335 8 . C T 40.7556 . AB=0.4;ABP=3.44459;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=32;DPB=32;DPRA=0.642857;EPP=9.52472;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=116;QR=1101;RO=29;RPL=0;RPP=9.52472;RPPR=65.983;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:14:14,0:14:538:0:0:0,-4.21442,-48.7648 0/1:5:3,2:3:116:2:78:-5.89832,0,-9.31255 0/0:13:12,1:12:447:1:38:0,-0.116121,-36.7734 ./.:.:.:.:.:.:.:. dDocent_Contig_12336 191 . G A 62.2439 . AB=0.333333;ABP=5.18177;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=22;DPB=22;DPRA=2.07692;EPP=9.52472;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=114;QR=694;RO=18;RPL=3;RPP=9.52472;RPPR=42.0968;RPR=0;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=42.0968;SRR=18;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:8:7,0:7:253:0:0:0,-2.10721,-22.9366 0/0:3:3,0:3:122:0:0:0,-0.90309,-11.3725 0/1:9:6,3:6:244:3:114:-7.92295,0,-19.6296 0/0:2:2,0:2:75:0:0:0,-0.60206,-7.12034 dDocent_Contig_12337 62 . C T 1325.38 . AB=0.230769;ABP=11.1951;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X1M1X;DP=71;DPB=71;DPRA=0.565217;EPP=9.52472;EPPR=52.9542;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=111;QR=833;RO=23;RPL=3;RPP=9.52472;RPPR=52.9542;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:23:0,0,23:0:0:0,23:0,825:-74.5695,-74.5695,-74.5695,-6.92369,-6.92369,0 0|0:35:14,0,21:14:505:0,21:0,726:-55.1193,-59.3338,-100.552,0,-41.5731,-35.2515 0|1:13:9,3,1:9:328:3,1:111,37:-6.37178,0,-25.8867,-6.05403,-23.7622,-32.5436 .:.:.:.:.:.:.:. dDocent_Contig_12338 7 . T C 5201.25 . AB=0.619718;ABP=38.3655;AC=4;AF=0.5;AN=8;AO=176;CIGAR=1X4M;DP=284;DPB=284;DPRA=0;EPP=334.851;EPPR=126.784;GTI=0;LEN=1;MEANALT=2.75;MQM=59.517;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=0.363636;PAIREDR=0.807018;PAO=0;PQA=0;PQR=0;PRO=0;QA=6650;QR=2184;RO=57;RPL=0;RPP=385.189;RPPR=126.784;RPR=176;RUN=1;SAF=170;SAP=334.851;SAR=6;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:71:20,0,9,41:20:768:0,9,41:0,342,1520:-118.046,-124.066,-187.113,-96.0165,-159.065,-156.356,0,-63.0471,-35.0002,-50.7049 0|1:68:17,11,9,31:17:648:11,9,31:427,348,1149:-88.8725,-58.9975,-108.845,-65.4033,-83.5697,-115.853,0,-18.1631,-24.5687,-43.8222 0|1:85:12,10,8,55:12:460:10,8,55:382,308,2119:-170.32,-142.668,-177.412,-148.643,-155.133,-183.989,0,-6.49069,-12.4652,-21.1981 0|1:60:8,0,3,49:8:308:0,3,49:0,116,1862:-150.285,-152.694,-177.983,-143.165,-168.455,-167.552,0,-25.288,-15.7593,-10.5375 dDocent_Contig_12339 9 . G A 154.062 . AB=0.304348;ABP=10.6577;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=96;DPB=96;DPRA=0.745455;EPP=20.3821;EPPR=194.1;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=302;QR=3391;RO=88;RPL=0;RPP=20.3821;RPPR=194.1;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=88;SRP=194.1;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:33:33,0:33:1279:0:0:0,-9.93399,-115.4 0/0:22:22,0:22:853:0:0:0,-6.62266,-77.0919 0/1:23:16,7:16:607:7:263:-17.1051,0,-48.0437 0/0:18:17,1:17:652:1:39:0,-1.52198,-55.1191 dDocent_Contig_12340 110 . T C 365.592 . AB=0.583333;ABP=3.73412;AC=3;AF=0.375;AN=8;AO=14;CIGAR=1X;DP=30;DPB=30;DPRA=1.72727;EPP=33.4109;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=40;MQMR=58;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=469;QR=555;RO=16;RPL=0;RPP=33.4109;RPPR=37.7539;RPR=14;RUN=1;SAF=0;SAP=33.4109;SAR=14;SRF=0;SRP=37.7539;SRR=16;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:7:0,7:0:0:7:239:-21.199,-2.10721,0 0/1:12:5,7:5:174:7:230:-16.7579,0,-12.3861 0/0:9:9,0:9:312:0:0:0,-2.70927,-28.4101 0/0:2:2,0:2:69:0:0:0,-0.60206,-6.5513 dDocent_Contig_12342 24 . A G 168.097 . AB=0.25;ABP=20.3821;AC=2;AF=0.25;AN=8;AO=10;CIGAR=1X;DP=67;DPB=67;DPRA=0;EPP=24.725;EPPR=126.784;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=405;QR=2263;RO=57;RPL=0;RPP=24.725;RPPR=126.784;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:17,3:17:691:3:120:-5.16671,0,-56.4982 0/0:17:16,1:16:632:1:41:0,-1.02294,-53.1188 0/0:18:17,1:17:662:1:41:0,-1.32397,-55.8055 0/1:12:7,5:7:278:5:203:-15.0407,0,-21.7764 dDocent_Contig_12343 15 . G C 639.713 . AB=0.421053;ABP=6.09608;AC=4;AF=0.5;AN=8;AO=24;CIGAR=1X;DP=57;DPB=57;DPRA=0;EPP=55.1256;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=967;QR=1321;RO=33;RPL=0;RPP=55.1256;RPPR=74.6689;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:11,3:11:437:3:118:-6.78778,0,-35.4689 0/1:21:17,4:17:691:4:158:-8.27703,0,-56.1966 0/1:17:3,14:3:122:14:568:-46.3447,0,-6.25498 0/1:5:2,3:2:71:3:123:-9.95964,0,-5.23428 dDocent_Contig_12344 126 . T G 106.552 . AB=0;ABP=0;AC=2;AF=0.25;AN=8;AO=3;CIGAR=1X1M1X2M4I2X1M1X3M1X;DP=32;DPB=32.9231;DPRA=0.310345;EPP=9.52472;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=111;QR=863;RO=26;RPL=0;RPP=9.52472;RPPR=59.4686;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=59.4686;SRR=26;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:4:4,0:4:139:0:0:0,-1.20412,-12.8527 1|1:3:0,3:0:0:3:111:-10.3539,-0.90309,0 0|0:10:8,0:8:269:0:0:0,-2.40824,-24.2235 0|0:15:14,0:14:455:0:0:0,-4.21442,-40.9515 dDocent_Contig_12345 121 . T G 485.91 . AB=0.392857;ABP=5.80219;AC=4;AF=0.5;AN=8;AO=19;CIGAR=1X;DP=37;DPB=37;DPRA=12;EPP=44.2683;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=660;QR=610;RO=18;RPL=0;RPP=44.2683;RPPR=42.0968;RPR=19;RUN=1;SAF=0;SAP=44.2683;SAR=19;SRF=0;SRP=42.0968;SRR=18;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:8:0,8:0:0:8:280:-25.54,-2.40824,0 0/1:15:10,5:10:335:5:170:-11.1193,0,-25.96 0/1:13:7,6:7:240:6:210:-15.3291,0,-18.022 0/0:1:1,0:1:35:0:0:0,-0.30103,-3.49863 dDocent_Contig_12346 9 . C A 139.216 . AB=0.315789;ABP=8.61041;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=106;DPB=106;DPRA=1.46512;EPP=18.2106;EPPR=217.986;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=270;QR=3812;RO=99;RPL=0;RPP=18.2106;RPPR=217.986;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=99;SRP=217.986;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:38:38,0:38:1472:0:0:0,-11.4391,-132.754 0/0:44:43,1:43:1658:1:37:0,-9.54749,-145.784 0/1:19:13,6:13:489:6:233:-15.6205,0,-38.6302 0/0:5:5,0:5:193:0:0:0,-1.50515,-17.7414 dDocent_Contig_12348 42 . A T 530.956 . AB=0.060241;ABP=142.429;AC=0;AF=0;AN=8;AO=5;CIGAR=9M1X3M;DP=92;DPB=96.1538;DPRA=0;EPP=13.8677;EPPR=89.8692;GTI=0;LEN=1;MEANALT=4.33333;MQM=60;MQMR=60;NS=4;NUMALT=5;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=193;QR=1564;RO=40;RPL=0;RPP=13.8677;RPPR=89.8692;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:43:17,9,3,0,9,3:17:674:9,3,0,9,3:342,117,0,337,115:-22.927,0,-52.7882,-18.4252,-45.8799,-73.0158,-28.0445,-55.4974,-73.9189,-83.5363,-0.453267,-27.911,-46.3318,-55.9492,-53.24,-18.6045,-46.059,-64.4805,-74.0979,-46.5109,-73.1948 0|0:29:17,7,1,0,3,1:17:654:7,1,0,3,1:270,39,0,120,41:-17.0459,0,-51.5695,-18.9577,-50.4708,-72.3408,-22.1634,-53.6767,-72.6418,-75.8478,-12.2754,-43.7896,-62.7551,-65.9611,-65.0581,-18.7777,-50.2916,-69.2569,-72.4629,-62.5761,-72.1619 0|0:11:4,3,0,0,3,1:4:156:3,0,0,3,1:108,0,0,115,37:-8.24269,-0.647461,-12.572,-9.44681,-13.4751,-22.2762,-9.44681,-13.4751,-22.2762,-22.2762,0,-4.03819,-12.8364,-12.8364,-11.9333,-6.42002,-10.4502,-19.25,-19.25,-9.81024,-18.949 0|0:9:2,3,0,3,0,0:2:80:3,0,3,0,0:118,0,118,0,0:-12.2192,-3.11321,-8.80358,-12.8213,-9.70667,-19.4133,-3.11321,0,-9.70667,-8.80358,-12.8213,-9.70667,-19.4133,-9.70667,-19.4133,-12.8213,-9.70667,-19.4133,-9.70667,-19.4133,-19.4133 dDocent_Contig_12350 23 . G C 1085.12 . AB=0.603175;ABP=8.83536;AC=4;AF=0.5;AN=8;AO=38;CIGAR=1X;DP=63;DPB=63;DPRA=0;EPP=85.5263;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1482;QR=976;RO=25;RPL=0;RPP=85.5263;RPPR=57.2971;RPR=38;RUN=1;SAF=38;SAP=85.5263;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:12,14:12:466:14:560:-42.9159,0,-34.4551 0/1:28:10,18:10:390:18:698:-54.7095,0,-27.0194 0/1:6:1,5:1:38:5:192:-15.8423,0,-1.99109 0/1:3:2,1:2:82:1:32:-2.29622,0,-6.87659 dDocent_Contig_12352 12 . A G 45.479 . AB=0.125;ABP=51.8684;AC=1;AF=0.125;AN=8;AO=11;CIGAR=1X;DP=172;DPB=172;DPRA=0;EPP=26.8965;EPPR=352.617;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=0.727273;PAIREDR=0.832298;PAO=0;PQA=0;PQR=0;PRO=0;QA=443;QR=6417;RO=161;RPL=0;RPP=26.8965;RPPR=352.617;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=161;SRP=352.617;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:67:63,4:63:2506:4:163:0,-5.11058,-210.63 0/1:40:35,5:35:1391:5:199:-6.24665,0,-113.405 0/0:49:48,1:48:1922:1:40:0,-10.7548,-169.186 0/0:16:15,1:15:598:1:41:0,-0.721913,-50.0633 dDocent_Contig_12354 110 . A G 40.6591 . AB=0.333333;ABP=5.18177;AC=2;AF=0.25;AN=8;AO=3;CIGAR=1X3M1X;DP=20;DPB=20;DPRA=0.818182;EPP=9.52472;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.941176;PAO=0;PQA=0;PQR=0;PRO=0;QA=105;QR=592;RO=17;RPL=0;RPP=9.52472;RPPR=39.9253;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=39.9253;SRR=17;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:5:5,0:5:173:0:0:0,-1.50515,-15.9102 0|1:2:1,1:1:35:1:35:-2.89657,0,-2.89657 0|0:6:6,0:6:209:0:0:0,-1.80618,-19.1511 0|1:7:5,2:5:175:2:70:-4.54019,0,-13.9865 dDocent_Contig_12356 25 . G A 926.923 . AB=0.142857;ABP=10.7656;AC=3;AF=0.5;AN=6;AO=27;CIGAR=1X;DP=47;DPB=47;DPRA=1.17857;EPP=61.6401;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1061;QR=769;RO=20;RPL=0;RPP=61.6401;RPPR=46.4397;RPR=27;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:26:0,26:0:0:26:1020:-92.0933,-7.82678,0 ./.:.:.:.:.:.:.:. 0/0:14:14,0:14:538:0:0:0,-4.21442,-48.7537 0/1:7:6,1:6:231:1:41:-1.98736,0,-19.0498 dDocent_Contig_12357 158 . C A 105.682 . AB=0.189189;ABP=34.0565;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=66;DPB=66;DPRA=3.82759;EPP=18.2106;EPPR=131.127;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=253;QR=2286;RO=59;RPL=7;RPP=18.2106;RPPR=131.127;RPR=0;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=131.127;SRR=59;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:37:30,7:30:1163:7:253:-11.9655,0,-93.8204 0/0:20:20,0:20:778:0:0:0,-6.0206,-70.3431 0/0:8:8,0:8:309:0:0:0,-2.40824,-28.1707 0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827 dDocent_Contig_12358 140 . C T 30.9511 . AB=0.25;ABP=7.35324;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=28;DPB=28;DPRA=0.8;EPP=7.35324;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=74;QR=916;RO=26;RPL=0;RPP=7.35324;RPPR=59.4686;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=59.4686;SRR=26;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:8:6,2:6:220:2:74:-4.61764,0,-17.7472 0/0:8:8,0:8:293:0:0:0,-2.40824,-26.7215 0/0:12:12,0:12:403:0:0:0,-3.61236,-36.5914 ./.:.:.:.:.:.:.:. dDocent_Contig_12360 18 . A T 306.137 . AB=0.129032;ABP=262.396;AC=3;AF=0.375;AN=8;AO=29;CIGAR=1X;DP=274;DPB=274;DPRA=0;EPP=65.983;EPPR=535.021;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.965517;PAIREDR=0.967347;PAO=0;PQA=0;PQR=0;PRO=0;QA=1154;QR=9792;RO=245;RPL=0;RPP=65.983;RPPR=535.021;RPR=29;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=245;SRP=535.021;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:85:76,9:76:3047:9:364:-7.537,0,-248.725 0/1:100:86,14:86:3434:14:556:-20.2782,0,-278.998 0/0:57:56,1:56:2233:1:40:0,-13.163,-197.138 0/1:32:27,5:27:1078:5:194:-8.19646,0,-87.6741 dDocent_Contig_12361 38 . C T 5492.76 . AB=0.0803571;ABP=174.324;AC=1;AF=0.125;AN=8;AO=9;CIGAR=2X2M;DP=231;DPB=231;DPRA=0;EPP=22.5536;EPPR=65.983;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=4;NUMALT=4;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=357;QR=1106;RO=29;RPL=0;RPP=22.5536;RPPR=65.983;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:112:0,8,9,89,6:0:0:8,9,89,6:305,357,3453,214:-313.066,-288.048,-285.64,-283.677,-258.659,-280.968,-29.398,-4.3792,0,-2.60638,-295.634,-270.616,-266.245,-11.9724,-293.827 0|0:50:7,3,0,40,0:7:269:3,0,40,0:119,0,1554,0:-125.568,-117.879,-139.058,-127.675,-139.961,-149.758,0,-12.2749,-22.0743,-10.0331,-127.675,-139.961,-149.758,-22.0743,-149.758 0|0:37:7,5,0,25,0:7:258:5,0,25,0:194,0,930,0:-73.9846,-60.1501,-79.739,-76.0918,-81.2441,-97.1855,0,-5.13631,-21.0835,-13.5578,-76.0918,-81.2441,-97.1855,-21.0835,-97.1855 0|0:32:15,0,0,15,2:15:579:0,0,15,2:0,0,589,55:-44.0293,-48.5447,-96.0947,-48.5447,-96.0947,-96.0947,0,-47.6444,-47.6444,-43.1289,-44.2145,-91.7578,-91.7578,-43.3134,-91.1557 dDocent_Contig_12362 12 . C G 68.6168 . AB=0.217391;ABP=18.9659;AC=3;AF=0.375;AN=8;AO=5;CIGAR=1X;DP=43;DPB=43;DPRA=0.383333;EPP=13.8677;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=200;QR=1533;RO=38;RPL=0;RPP=13.8677;RPPR=85.5263;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:20:20,0:20:806:0:0:0,-6.0206,-72.8568 0/1:12:10,2:10:400:2:80:-3.97922,0,-32.7464 0/1:3:2,1:2:82:1:38:-2.89418,0,-6.87659 0/1:8:6,2:6:245:2:82:-5.37144,0,-20.0212 dDocent_Contig_12363 15 . G A 34.1358 . AB=0.101449;ABP=98.2089;AC=1;AF=0.125;AN=8;AO=11;CIGAR=1X;DP=302;DPB=302;DPRA=1.64912;EPP=26.8965;EPPR=606.801;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.933566;PAO=0;PQA=0;PQR=0;PRO=0;QA=442;QR=11275;RO=286;RPL=0;RPP=26.8965;RPPR=624.051;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=284;SRP=606.801;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:119:113,4:113:4436:4:161:0,-20.7487,-384.327 0/0:79:78,0:78:3072:0:0:0,-23.4803,-276.291 0/1:69:60,7:60:2379:7:281:-5.11238,0,-193.725 0/0:35:35,0:35:1388:0:0:0,-10.536,-125.174 dDocent_Contig_12364 15 . T C 792.49 . AB=0.185654;ABP=206.423;AC=4;AF=0.5;AN=8;AO=44;CIGAR=1X1M;DP=237;DPB=237;DPRA=0;EPP=98.5551;EPPR=404.733;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.931818;PAIREDR=0.875676;PAO=0;PQA=0;PQR=0;PRO=0;QA=1726;QR=7292;RO=185;RPL=0;RPP=98.5551;RPPR=404.733;RPR=44;RUN=1;SAF=44;SAP=98.5551;SAR=0;SRF=185;SRP=404.733;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:55:45,3,7:45:1763:3,7:108,266:-8.27388,-13.0149,-157.086,0,-136.184,-142.886 0|1:83:71,0,12:71:2792:0,12:0,464:-17.1194,-38.4925,-268.151,0,-230.045,-226.433 0|1:71:51,2,18:51:2013:2,18:78,716:-43.6072,-52.5489,-217.571,0,-159.22,-160.213 0|1:28:18,2,7:18:724:2,7:79,280:-17.6465,-16.5657,-75.6299,0,-53.1676,-57.5603 dDocent_Contig_12365 10 . T A 463.124 . AB=0.354167;ABP=11.8771;AC=1;AF=0.125;AN=8;AO=17;CIGAR=1X;DP=73;DPB=73;DPRA=5.76;EPP=39.9253;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=687;QR=2230;RO=56;RPL=0;RPP=39.9253;RPPR=124.613;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:48:31,17:31:1228:17:687:-47.7103,0,-96.335 0/0:10:10,0:10:405:0:0:0,-3.0103,-36.8095 0/0:10:10,0:10:393:0:0:0,-3.0103,-35.7245 0/0:5:5,0:5:204:0:0:0,-1.50515,-18.744 dDocent_Contig_12366 39 . A G 39.7355 . AB=0.25;ABP=7.35324;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X3M1X;DP=50;DPB=50;DPRA=0.571429;EPP=7.35324;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.729167;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=1886;RO=48;RPL=0;RPP=7.35324;RPPR=107.241;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:8:6,2:6:224:2:82:-5.37144,0,-18.1052 0|0:16:16,0:16:635:0:0:0,-4.81648,-57.4866 0|0:17:17,0:17:665:0:0:0,-5.11751,-60.1769 0|0:9:9,0:9:362:0:0:0,-2.70927,-32.9446 dDocent_Contig_12368 19 . G A 327.275 . AB=0.232877;ABP=48.2543;AC=4;AF=0.5;AN=8;AO=17;CIGAR=1X;DP=73;DPB=73;DPRA=0;EPP=39.9253;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.764706;PAIREDR=0.857143;PAO=0;PQA=0;PQR=0;PRO=0;QA=673;QR=2218;RO=56;RPL=0;RPP=39.9253;RPPR=124.613;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:16,7:16:644:7:286:-19.1911,0,-51.3676 0/1:35:31,4:31:1219:4:147:-3.05139,0,-99.4457 0/1:12:7,5:7:282:5:199:-14.6751,0,-22.1402 0/1:3:2,1:2:73:1:41:-3.19148,0,-6.0261 dDocent_Contig_12369 9 . C T 392.6 . AB=0.153846;ABP=16.5402;AC=3;AF=0.375;AN=8;AO=2;CIGAR=2X3M;DP=42;DPB=42;DPRA=2.6;EPP=7.35324;EPPR=59.4686;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=79;QR=996;RO=26;RPL=0;RPP=7.35324;RPPR=59.4686;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:13:0,10,2:0:0:10,2:379,79:-37.556,-6.49766,-3.48736,-31.0529,0,-30.4509 0|1:19:16,3,0:16:615:3,0:116,0:-5.09813,0,-49.968,-9.91461,-50.8711,-60.3998 0|0:4:4,0,0:4:153:0,0:0,0:0,-1.20412,-14.1412,-1.20412,-14.1412,-14.1412 0|0:6:6,0,0:6:228:0,0:0,0:0,-1.80618,-20.8835,-1.80618,-20.8835,-20.8835 dDocent_Contig_12371 23 . C G 152.03 . AB=0.266667;ABP=17.1973;AC=2;AF=0.25;AN=8;AO=8;CIGAR=1X;DP=40;DPB=40;DPRA=3;EPP=20.3821;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.125;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.96875;PAO=0;PQA=0;PQR=0;PRO=0;QA=299;QR=1244;RO=32;RPL=0;RPP=20.3821;RPPR=72.4974;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:10,4:10:405:4:141:-8.81604,0,-32.5956 0/0:9:9,0:9:338:0:0:0,-2.70927,-29.9839 0/1:16:12,4:12:476:4:158:-9.784,0,-38.3754 0/0:1:1,0:1:25:0:0:0,-0.30103,-2.49986 dDocent_Contig_12372 39 . C T 93.5477 . AB=0.307692;ABP=7.18621;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=38;DPB=38;DPRA=1.56;EPP=11.6962;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=162;QR=1362;RO=34;RPL=0;RPP=11.6962;RPPR=76.8404;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5,0:5:198:0:0:0,-1.50515,-18.1971 0/0:17:17,0:17:688:0:0:0,-5.11751,-62.2497 0/1:13:9,4:9:353:4:162:-11.0536,0,-28.2166 0/0:3:3,0:3:123:0:0:0,-0.90309,-11.4648 dDocent_Contig_12374 105 . C T 178.326 . AB=0.2;ABP=10.8276;AC=3;AF=0.375;AN=8;AO=5;CIGAR=1X1M1X;DP=26;DPB=26;DPRA=0;EPP=13.8677;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.944444;PAO=0;PQA=0;PQR=0;PRO=0;QA=195;QR=717;RO=18;RPL=0;RPP=13.8677;RPPR=42.0968;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=42.0968;SRR=18;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:10:8,2,0:8:324:2,0:78,0:-4.39248,0,-26.5191,-6.80072,-27.1212,-33.5293 0|0:6:5,0,1:5:194:0,1:0,40:-2.1895,-3.69465,-19.6234,0,-16.3263,-16.0253 1|1:3:0,3,0:0:0:3,0:117,0:-10.9104,-0.90309,0,-10.9104,-0.90309,-10.9104 0|0:7:5,0,2:5:199:0,2:0,82:-5.67247,-7.17762,-23.555,0,-16.7834,-16.1814 dDocent_Contig_12375 13 . C G 391.389 . AB=0.183206;ABP=117.203;AC=4;AF=0.5;AN=8;AO=24;CIGAR=1X;DP=131;DPB=131;DPRA=0;EPP=55.1256;EPPR=235.358;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.875;PAIREDR=0.794393;PAO=0;PQA=0;PQR=0;PRO=0;QA=939;QR=4264;RO=107;RPL=0;RPP=55.1256;RPPR=235.358;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=107;SRP=235.358;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:37:31,6:31:1243:6:229:-9.82955,0,-100.999 0/1:27:22,5:22:864:5:186:-8.96714,0,-69.9369 0/1:40:31,9:31:1243:9:363:-20.9931,0,-100.097 0/1:27:23,4:23:914:4:161:-6.74709,0,-74.4316 dDocent_Contig_12376 155 . G A 31.536 . AB=0.2;ABP=10.8276;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=26;DPB=26;DPRA=1.25;EPP=7.35324;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.958333;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=959;RO=24;RPL=0;RPP=7.35324;RPPR=55.1256;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=55.1256;SRR=24;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:8,2:8:325:2:81:-4.67543,0,-26.6093 0/0:15:15,0:15:593:0:0:0,-4.51545,-53.7063 ./.:.:.:.:.:.:.:. 0/0:1:1,0:1:41:0:0:0,-0.30103,-4.09457 dDocent_Contig_12377 12 . G A 1139.8 . AB=0.511111;ABP=3.05855;AC=6;AF=0.75;AN=8;AO=37;CIGAR=1X1M1X;DP=59;DPB=59;DPRA=0;EPP=83.3548;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1439;QR=850;RO=22;RPL=0;RPP=83.3548;RPPR=50.7827;RPR=37;RUN=1;SAF=37;SAP=83.3548;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:11:7,4:7:278:4:155:-11.0121,0,-22.0794 0|1:34:15,19:15:572:19:755:-58.0407,0,-41.5833 1|1:9:0,9:0:0:9:345:-31.4079,-2.70927,0 1|1:5:0,5:0:0:5:184:-16.9168,-1.50515,0 dDocent_Contig_12379 24 . C A 172.643 . AB=0.32;ABP=10.0459;AC=3;AF=0.375;AN=8;AO=8;CIGAR=4X;DP=32;DPB=32;DPRA=1.19048;EPP=20.3821;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=51.375;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.958333;PAO=0;PQA=0;PQR=0;PRO=0;QA=326;QR=947;RO=24;RPL=0;RPP=20.3821;RPPR=55.1256;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:7:3,4:3:121:4:164:-12.9598,0,-9.17299 0|1:13:11,2:11:433:2:81:-3.64586,0,-35.4112 0|1:5:3,2:3:119:2:81:-6.0541,0,-9.59024 0|0:7:7,0:7:274:0:0:0,-2.10721,-25.0258 dDocent_Contig_12380 123 . C T 97.6793 . AB=0.263158;ABP=12.2676;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=29;DPB=29;DPRA=3.8;EPP=13.8677;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=185;QR=862;RO=24;RPL=0;RPP=13.8677;RPPR=55.1256;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=55.1256;SRR=24;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:14,5:14:497:5:185:-11.2904,0,-39.3413 0/0:8:8,0:8:291:0:0:0,-2.40824,-26.5395 0/0:2:2,0:2:74:0:0:0,-0.60206,-7.02588 ./.:.:.:.:.:.:.:. dDocent_Contig_12381 1 . N G 77.8076 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:82:-7.77968,-0.60206,0 dDocent_Contig_12382 8 . C A 435.824 . AB=0.208333;ABP=38.4777;AC=1;AF=0.125;AN=8;AO=10;CIGAR=1X5M1X1M1X;DP=58;DPB=57.4444;DPRA=1.6;EPP=24.725;EPPR=63.8115;GTI=0;LEN=1;MEANALT=2.66667;MQM=58.4;MQMR=60;NS=4;NUMALT=5;ODDS=0;PAIRED=0.9;PAIREDR=0.964286;PAO=0;PQA=0;PQR=0;PRO=0;QA=388;QR=1109;RO=28;RPL=0;RPP=24.725;RPPR=63.8115;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:23:3,5,7,0,8,0:3:120:5,7,0,8,0:193,273,0,309,0:-36.9191,-21.9724,-30.3546,-15.4846,-9.52354,-23.2652,-37.8222,-31.8598,-25.3724,-47.7092,-12.4478,-6.48731,0,-22.3355,-19.9273,-37.8222,-31.8598,-25.3724,-47.7092,-22.3355,-47.7092 0|0:12:8,0,1,0,0,3:8:317:0,1,0,0,3:0,39,0,0,122:-7.39294,-9.80118,-35.895,-6.59696,-32.6897,-32.3887,-9.80118,-35.895,-32.6897,-35.895,-9.80118,-35.895,-32.6897,-35.895,-35.895,0,-26.0985,-22.8934,-26.0985,-26.0985,-25.1955 0|0:10:10,0,0,0,0,0:10:395:0,0,0,0,0:0,0,0,0,0:0,-3.0103,-35.9095,-3.0103,-35.9095,-35.9095,-3.0103,-35.9095,-35.9095,-35.9095,-3.0103,-35.9095,-35.9095,-35.9095,-35.9095,-3.0103,-35.9095,-35.9095,-35.9095,-35.9095,-35.9095 0|0:13:7,0,2,2,2,0:7:277:0,2,2,2,0:0,76,81,79,0:-4.56893,-6.67614,-29.4753,-0.449785,-23.245,-22.643,0,-22.803,-16.5729,-22.2009,-0.174274,-22.9743,-16.7446,-16.3015,-22.3722,-6.67614,-29.4753,-23.245,-22.803,-22.9743,-29.4753 dDocent_Contig_12383 7 . T A 155.796 . AB=0.333333;ABP=8.07707;AC=2;AF=0.25;AN=8;AO=8;CIGAR=1X2M1X2M1X2M1X;DP=44;DPB=44;DPRA=1.13333;EPP=20.3821;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1.33333;MQM=57.25;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=313;QR=1293;RO=34;RPL=0;RPP=20.3821;RPPR=76.8404;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:10:9,0:9:343:0:0:0,-2.70927,-30.8465 0|1:13:7,5:7:269:5:196:-13.9852,0,-20.5645 0|0:13:12,1:12:456:1:39:0,-0.0188224,-37.4944 0|1:8:6,2:6:225:2:78:-4.99117,0,-18.2005 dDocent_Contig_12384 54 . T G 203.386 . AB=0.285714;ABP=14.1779;AC=4;AF=0.5;AN=8;AO=12;CIGAR=1X;DP=53;DPB=53;DPRA=0;EPP=29.068;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=415;QR=1348;RO=41;RPL=12;RPP=29.068;RPPR=92.0407;RPR=0;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:12,6:12:391:6:209:-13.7325,0,-30.0836 0/0:23:21,2:21:715:2:69:0,-0.371027,-58.1151 1/1:2:0,2:0:0:2:68:-6.45788,-0.60206,0 0/1:10:8,2:8:242:2:69:-3.54236,0,-19.0648 dDocent_Contig_12385 17 . A C 153.445 . AB=0.235294;ABP=23.7032;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=36;DPB=36;DPRA=8.5;EPP=20.3821;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=315;QR=1103;RO=28;RPL=0;RPP=20.3821;RPPR=63.8115;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:11,2:11:430:2:74:-3.11147,0,-35.138 0/1:21:15,6:15:601:6:241:-15.7445,0,-48.1075 0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83432 ./.:.:.:.:.:.:.:. dDocent_Contig_12386 84 . G A 2226.93 . AB=0.716667;ABP=51.9408;AC=4;AF=0.5;AN=8;AO=86;CIGAR=1X;DP=120;DPB=120;DPRA=0;EPP=189.757;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=59.6512;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.906977;PAIREDR=0.882353;PAO=0;PQA=0;PQR=0;PRO=0;QA=2944;QR=1185;RO=34;RPL=86;RPP=189.757;RPPR=76.8404;RPR=0;RUN=1;SAF=86;SAP=189.757;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:35:9,26:9:313:26:891:-69.9467,0,-17.971 0/1:16:9,7:9:314:7:246:-17.6658,0,-23.7814 0/1:41:7,34:7:245:34:1166:-92.8998,0,-10.049 0/1:28:9,19:9:313:19:641:-49.5788,0,-20.0782 dDocent_Contig_12387 19 . G A 579.89 . AB=0.9;ABP=30.8051;AC=1;AF=0.125;AN=8;AO=18;CIGAR=1X;DP=36;DPB=36;DPRA=3.75;EPP=42.0968;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=717;QR=703;RO=18;RPL=0;RPP=42.0968;RPPR=42.0968;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:2,18:2:79:18:717:-58.8321,0,-1.47703 0/0:9:9,0:9:349:0:0:0,-2.70927,-31.769 0/0:6:6,0:6:235:0:0:0,-1.80618,-21.52 0/0:1:1,0:1:40:0:0:0,-0.30103,-3.99568 dDocent_Contig_12389 7 . T G 510.306 . AB=0.45098;ABP=4.07475;AC=5;AF=0.625;AN=8;AO=23;CIGAR=1X4M;DP=51;DPB=51;DPRA=0;EPP=52.9542;EPPR=48.6112;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=722;QR=794;RO=21;RPL=0;RPP=52.9542;RPPR=48.6112;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:11:9,0,2,0:9:346:0,2,0:0,71,0:-3.42975,-6.13902,-34.568,0,-28.7891,-28.1871,-6.13902,-34.568,-28.7891,-34.568 1|1:12:0,2,9,1:0:0:2,9,1:75,306,40:-30.9075,-24.7594,-24.1573,-6.12674,0,-3.41747,-27.608,-21.4583,-2.82339,-27.307 0|1:14:7,2,3,2:7:253:2,3,2:60,94,78:-5.4335,-2.75848,-22.8107,0,-15.8721,-19.7515,-1.10559,-16.9939,-14.2352,-21.1788 0|1:14:5,0,9,0:5:195:0,9,0:0,251,0:-18.641,-20.1461,-36.2151,0,-16.419,-13.7098,-20.1461,-36.2151,-16.419,-36.2151 dDocent_Contig_12391 73 . G T 72.3189 . AB=0.333333;ABP=5.9056;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1M1D1X;DP=51;DPB=49.6667;DPRA=0.615385;EPP=11.6962;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=137;QR=1598;RO=47;RPL=4;RPP=11.6962;RPPR=105.07;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:31:31,0:31:1047:0:0:0,-9.33193,-94.5365 0|0:8:8,0:8:277:0:0:0,-2.40824,-25.267 0|1:12:8,4:8:274:4:137:-9.0558,0,-21.3813 .:.:.:.:.:.:.:. dDocent_Contig_12392 7 . T C 648.483 . AB=0.273438;ABP=60.0793;AC=4;AF=0.5;AN=8;AO=35;CIGAR=1X;DP=128;DPB=128;DPRA=0;EPP=79.0118;EPPR=204.957;GTI=0;LEN=1;MEANALT=1;MQM=48.0571;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.628571;PAIREDR=0.978495;PAO=0;PQA=0;PQR=0;PRO=0;QA=1346;QR=3556;RO=93;RPL=0;RPP=79.0118;RPPR=204.957;RPR=35;RUN=1;SAF=35;SAP=79.0118;SAR=0;SRF=93;SRP=204.957;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:22,9:22:850:9:349:-14.313,0,-67.4897 0/1:51:33,18:33:1256:18:692:-44.865,0,-97.9801 0/1:27:21,6:21:800:6:227:-11.0646,0,-64.1953 0/1:19:17,2:17:650:2:78:-0.521972,0,-53.1158 dDocent_Contig_12393 65 . G T 422.666 . AB=0.132075;ABP=65.3275;AC=4;AF=0.5;AN=8;AO=19;CIGAR=1X;DP=74;DPB=74;DPRA=2.75;EPP=44.2683;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.842105;PAIREDR=0.745455;PAO=0;PQA=0;PQR=0;PRO=0;QA=716;QR=2109;RO=55;RPL=19;RPP=44.2683;RPPR=122.441;RPR=0;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:32:28,4:28:1083:4:146:-3.86345,0,-88.1405 0/0:8:8,0:8:301:0:0:0,-2.40824,-27.4451 0/1:21:18,3:18:686:3:112:-4.12486,0,-55.7502 1/1:13:1,12:1:39:12:458:-37.6729,-0.0168257,0 dDocent_Contig_12394 7 . T C 768.764 . AB=0.360465;ABP=17.5541;AC=4;AF=0.5;AN=8;AO=31;CIGAR=1X3M1X;DP=86;DPB=86;DPRA=0;EPP=70.3259;EPPR=105.07;GTI=0;LEN=1;MEANALT=2.25;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1194;QR=1803;RO=47;RPL=0;RPP=70.3259;RPPR=105.07;RPR=31;RUN=1;SAF=31;SAP=70.3259;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:12:4,7,1:4:155:7,1:271,38:-21.0644,0,-10.6329,-19.1529,-9.62508,-31.5861 0|1:37:18,14,4:18:696:14,4:538,156:-38.7427,0,-52.9523,-31.3366,-44.3427,-87.3029 0|1:28:22,4,0:22:842:4,0:155,0:-6.10983,0,-67.8846,-12.7325,-69.0887,-81.8234 0|1:9:3,6,0:3:110:6,0:230,0:-18.3575,0,-7.55173,-19.2606,-9.35791,-28.2465 dDocent_Contig_12395 16 . G C 276.224 . AB=0.277778;ABP=18.4519;AC=4;AF=0.5;AN=8;AO=15;CIGAR=1X;DP=78;DPB=78;DPRA=0;EPP=35.5824;EPPR=137.642;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.866667;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=576;QR=2466;RO=62;RPL=0;RPP=35.5824;RPPR=137.642;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:19,4:19:770:4:131:-5.18079,0,-62.697 0/0:40:36,3:36:1436:3:123:0,-0.684838,-118.026 0/1:13:7,6:7:260:6:241:-18.1533,0,-19.8358 1/1:2:0,2:0:0:2:81:-7.68573,-0.60206,0 dDocent_Contig_12396 172 . C T 87.8402 . AB=0.26087;ABP=14.4341;AC=2;AF=0.25;AN=8;AO=6;CIGAR=1X;DP=34;DPB=34;DPRA=2.09091;EPP=16.0391;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=204;QR=1117;RO=28;RPL=6;RPP=16.0391;RPPR=63.8115;RPR=0;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=63.8115;SRR=28;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:2:2,0:2:80:0:0:0,-0.60206,-7.59179 0/0:9:9,0:9:360:0:0:0,-2.70927,-32.7614 0/1:5:4,1:4:154:1:41:-2.58942,0,-12.7275 0/1:18:13,5:13:523:5:163:-9.5652,0,-41.9979 dDocent_Contig_12397 27 . G A 85.9511 . AB=0.169231;ABP=64.7803;AC=2;AF=0.25;AN=8;AO=11;CIGAR=1X;DP=122;DPB=122;DPRA=1.14035;EPP=3.20771;EPPR=90.8278;GTI=0;LEN=1;MEANALT=1;MQM=32.2727;MQMR=55.1351;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.279279;PAO=0;PQA=0;PQR=0;PRO=0;QA=431;QR=4429;RO=111;RPL=0;RPP=26.8965;RPPR=244.044;RPR=11;RUN=1;SAF=6;SAP=3.20771;SAR=5;SRF=89;SRP=90.8278;SRR=22;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:33:26,7:26:1041:7:273:-9.01774,0,-83.1404 0/0:27:27,0:27:1076:0:0:0,-8.12781,-95.9794 0/0:30:30,0:30:1197:0:0:0,-9.0309,-106.9 0/1:32:28,4:28:1115:4:158:-2.96367,0,-89.6895 dDocent_Contig_12398 9 . C T 105.743 . AB=0.206897;ABP=24.6501;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=95;DPB=95;DPRA=1.31818;EPP=16.0391;EPPR=196.271;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.224719;PAO=0;PQA=0;PQR=0;PRO=0;QA=226;QR=3353;RO=89;RPL=0;RPP=16.0391;RPPR=196.271;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=89;SRP=196.271;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:23,6:23:855:6:226:-11.9722,0,-68.5391 0/0:45:45,0:45:1697:0:0:0,-13.5463,-152.987 0/0:12:12,0:12:458:0:0:0,-3.61236,-41.5684 0/0:9:9,0:9:343:0:0:0,-2.70927,-31.2271 dDocent_Contig_12399 17 . T C 542.58 . AB=0.575758;ABP=4.65535;AC=2;AF=0.25;AN=8;AO=19;CIGAR=1X;DP=38;DPB=38;DPRA=6.6;EPP=44.2683;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=743;QR=733;RO=19;RPL=0;RPP=44.2683;RPPR=44.2683;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:6,15:6:225:15:579:-46.118,0,-14.286 0/1:12:8,4:8:314:4:164:-11.5375,0,-25.013 0/0:2:2,0:2:79:0:0:0,-0.60206,-7.49763 0/0:3:3,0:3:115:0:0:0,-0.90309,-10.7249 dDocent_Contig_12400 46 . A G 173.406 . AB=0.266667;ABP=17.1973;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1M1I3M1X;DP=43;DPB=44.6;DPRA=4.61538;EPP=20.3821;EPPR=62.6327;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=0.942857;PAO=0;PQA=0;PQR=0;PRO=0;QA=306;QR=1366;RO=35;RPL=0;RPP=20.3821;RPPR=62.6327;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:30:22,8:22:855:8:306:-18.8628,0,-68.2328 0|0:12:12,0:12:470:0:0:0,-3.61236,-42.6484 0|0:1:1,0:1:41:0:0:0,-0.30103,-4.09457 .:.:.:.:.:.:.:. dDocent_Contig_12402 26 . C T 51.8115 . AB=0.2;ABP=14.7363;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=46;DPB=46;DPRA=1.45161;EPP=9.52472;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=119;QR=1715;RO=43;RPL=0;RPP=9.52472;RPPR=96.3836;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:12,3:12:484:3:119:-6.57905,0,-39.3951 0/0:18:18,0:18:727:0:0:0,-5.41854,-65.7542 0/0:5:5,0:5:200:0:0:0,-1.50515,-18.3795 0/0:8:8,0:8:304:0:0:0,-2.40824,-27.7116 dDocent_Contig_12403 12 . A C 755.902 . AB=0.540541;ABP=3.5385;AC=5;AF=0.625;AN=8;AO=25;CIGAR=1X;DP=42;DPB=42;DPRA=0;EPP=57.2971;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1007;QR=680;RO=17;RPL=0;RPP=57.2971;RPPR=39.9253;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:6,8:6:245:8:325:-25.4046,0,-18.2151 0/1:17:9,8:9:353:8:324:-24.4108,0,-27.0101 1/1:5:0,5:0:0:5:199:-18.288,-1.50515,0 0/1:6:2,4:2:82:4:159:-12.8846,0,-5.9735 dDocent_Contig_12404 11 . G A 861.842 . AB=0.0731707;ABP=132.769;AC=0;AF=0;AN=8;AO=6;CIGAR=1X2M1X4M2X2M1X3M1X;DP=133;DPB=133;DPRA=0;EPP=16.0391;EPPR=146.327;GTI=0;LEN=1;MEANALT=3.5;MQM=60;MQMR=60;NS=4;NUMALT=5;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=232;QR=2551;RO=66;RPL=0;RPP=16.0391;RPPR=146.327;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=66;SRP=146.327;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:36:23,10,0,0,0,3:23:895:10,0,0,0,3:390,0,0,0,122:-25.1199,0,-70.5283,-32.0436,-73.5386,-105.595,-32.0436,-73.5386,-105.595,-105.595,-32.0436,-73.5386,-105.595,-105.595,-105.595,-21.9765,-63.4734,-95.5299,-95.5299,-95.5299,-94.6268 0|0:50:16,0,14,11,5,4:16:628:0,14,11,5,4:0,519,264,195,161:-37.287,-42.1035,-93.7754,0,-51.6939,-47.4795,-24.6809,-76.3366,-34.2729,-73.0253,-26.0636,-77.742,-35.6569,-60.3072,-76.2368,-28.8237,-80.5011,-38.4165,-63.0652,-64.4667,-79.297 0|0:32:15,0,9,0,1,7:15:563:0,9,0,1,7:0,353,0,37,274:-24.5156,-29.0311,-75.1381,0,-46.1054,-43.3961,-29.0311,-75.1381,-46.1054,-75.1381,-26.0053,-72.1115,-43.0788,-72.1115,-71.8104,-6.50191,-52.6073,-23.5719,-52.6073,-49.5807,-50.5001 0|0:15:12,0,3,0,0,0:12:465:0,3,0,0,0:0,120,0,0,0:-6.65962,-10.272,-48.4626,0,-38.5873,-37.6842,-10.272,-48.4626,-38.5873,-48.4626,-10.272,-48.4626,-38.5873,-48.4626,-48.4626,-10.272,-48.4626,-38.5873,-48.4626,-48.4626,-48.4626 dDocent_Contig_12405 11 . G A 140.255 . AB=0.160714;ABP=59.0033;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X;DP=97;DPB=97;DPRA=4.09756;EPP=22.5536;EPPR=194.1;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=358;QR=3498;RO=88;RPL=0;RPP=22.5536;RPPR=194.1;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=88;SRP=194.1;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:28:28,0:28:1100:0:0:0,-8.42884,-99.2777 0/1:56:47,9:47:1886:9:358:-15.7244,0,-153.087 0/0:5:5,0:5:198:0:0:0,-1.50515,-18.1965 0/0:8:8,0:8:314:0:0:0,-2.40824,-28.6176 dDocent_Contig_12406 179 . C T 314.677 . AB=0.444444;ABP=3.73412;AC=3;AF=0.375;AN=8;AO=12;CIGAR=1X;DP=37;DPB=37;DPRA=0.9;EPP=29.068;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=483;QR=980;RO=25;RPL=12;RPP=29.068;RPPR=57.2971;RPR=0;RUN=1;SAF=0;SAP=29.068;SAR=12;SRF=0;SRP=57.2971;SRR=25;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:8:7,1:7:281:1:41:-1.68633,0,-23.2528 0/0:10:10,0:10:378:0:0:0,-3.0103,-34.3602 0/1:12:4,8:4:157:8:322:-25.7358,0,-10.8961 0/1:7:4,3:4:164:3:120:-9.0801,0,-13.0427 dDocent_Contig_12407 122 . G C 85.8473 . AB=0.571429;ABP=3.32051;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=45;DPB=45;DPRA=0.552632;EPP=11.6962;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=134;QR=1470;RO=41;RPL=0;RPP=11.6962;RPPR=92.0407;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=92.0407;SRR=41;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:15:15,0:15:547:0:0:0,-4.51545,-49.5684 0/1:7:3,4:3:103:4:134:-10.2837,0,-7.50239 0/0:18:18,0:18:640:0:0:0,-5.41854,-57.9295 0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521 dDocent_Contig_12408 7 . T C 3939.6 . AB=0.505415;ABP=3.08085;AC=4;AF=0.5;AN=8;AO=140;CIGAR=1X1M;DP=277;DPB=277;DPRA=0;EPP=307.016;EPPR=272.273;GTI=0;LEN=1;MEANALT=1.75;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=0.964286;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5341;QR=4739;RO=124;RPL=0;RPP=307.016;RPPR=272.273;RPR=140;RUN=1;SAF=140;SAP=307.016;SAR=0;SRF=124;SRP=272.273;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:129:50,0,8,71:50:1914:0,8,71:0,304,2690:-205.488,-220.54,-377.612,-195.608,-352.681,-350.273,0,-157.074,-132.143,-135.7 0|1:80:31,4,0,45:31:1188:4,0,45:153,0,1717:-131.53,-128.307,-224.607,-140.862,-225.811,-238.366,0,-84.9485,-97.5038,-83.9574 0|1:52:32,0,0,19:32:1212:0,0,19:0,0,739:-51.2317,-60.8646,-160.228,-60.8646,-160.228,-160.228,0,-99.4902,-99.4902,-93.7706 0|1:16:11,0,0,5:11:425:0,0,5:0,0,195:-13.1077,-16.419,-51.3238,-16.419,-51.3238,-51.3238,0,-35.2932,-35.2932,-33.7881 dDocent_Contig_12409 7 . T C 314.836 . AB=0.423077;ABP=4.34659;AC=4;AF=0.5;AN=8;AO=13;CIGAR=1X;DP=41;DPB=41;DPRA=0;EPP=31.2394;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.461538;PAIREDR=0.714286;PAO=0;PQA=0;PQR=0;PRO=0;QA=499;QR=1063;RO=28;RPL=0;RPP=31.2394;RPPR=63.8115;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:14:13,1:13:499:1:37:0,-0.516591,-41.5601 0/1:14:6,8:6:233:8:306:-23.686,0,-17.1257 0/1:12:9,3:9:331:3:117:-7.29802,0,-26.5234 1/1:1:0,1:0:0:1:39:-3.89656,-0.30103,0 dDocent_Contig_12410 143 . T C 46.4906 . AB=0.2;ABP=22.5536;AC=4;AF=0.5;AN=8;AO=5;CIGAR=1X;DP=25;DPB=25;DPRA=0;EPP=13.8677;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=188;QR=655;RO=19;RPL=0;RPP=13.8677;RPPR=44.2683;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=44.2683;SRR=19;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:7,2:7:247:2:78:-4.52432,0,-19.765 0/1:7:6,1:6:210:1:32:-1.0921,0,-17.1331 0/1:6:5,1:5:169:1:39:-2.09038,0,-13.7353 0/1:2:1,1:1:29:1:39:-3.2945,0,-2.2976 dDocent_Contig_12411 52 . G T 490.128 . AB=0.328125;ABP=19.4321;AC=3;AF=0.375;AN=8;AO=21;CIGAR=1X;DP=66;DPB=66;DPRA=10.6667;EPP=48.6112;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.955556;PAO=0;PQA=0;PQR=0;PRO=0;QA=805;QR=1765;RO=45;RPL=21;RPP=48.6112;RPPR=100.727;RPR=0;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:38:23,15:23:894:15:565:-39.7471,0,-69.3287 0/1:19:14,5:14:553:5:199:-12.569,0,-44.3931 0/1:7:6,1:6:239:1:41:-1.98736,0,-19.7776 0/0:2:2,0:2:79:0:0:0,-0.60206,-7.49724 dDocent_Contig_12412 13 . G A 222.99 . AB=0.3125;ABP=12.7819;AC=3;AF=0.5;AN=6;AO=10;CIGAR=1X;DP=32;DPB=32;DPRA=0;EPP=24.725;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=403;QR=881;RO=22;RPL=0;RPP=24.725;RPPR=50.7827;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:13,7:13:521:7:280:-19.5507,0,-41.2172 0/1:9:7,2:7:281:2:82:-5.07041,0,-22.9527 ./.:.:.:.:.:.:.:. 0/1:3:2,1:2:79:1:41:-3.19148,0,-6.59415 dDocent_Contig_12413 18 . G A 294.776 . AB=0.833333;ABP=14.5915;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X;DP=29;DPB=29;DPRA=1.41176;EPP=24.725;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=384;QR=751;RO=19;RPL=0;RPP=24.725;RPPR=44.2683;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:6:6,0:6:243:0:0:0,-1.80618,-22.2476 0/0:11:11,0:11:432:0:0:0,-3.31133,-39.2309 0/1:12:2,10:2:76:10:384:-31.2978,0,-3.60118 ./.:.:.:.:.:.:.:. dDocent_Contig_12414 8 . C T 439.065 . AB=0.615385;ABP=6.01695;AC=1;AF=0.125;AN=8;AO=16;CIGAR=1X;DP=49;DPB=49;DPRA=3.3913;EPP=37.7539;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=52.9375;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.75;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=622;QR=1247;RO=33;RPL=0;RPP=37.7539;RPPR=74.6689;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:15:15,0:15:546:0:0:0,-4.51545,-49.4705 0/1:26:10,16:10:389:16:622:-45.6052,0,-27.5416 0/0:6:6,0:6:234:0:0:0,-1.80618,-21.4311 0/0:2:2,0:2:78:0:0:0,-0.60206,-7.40347 dDocent_Contig_12415 11 . A T 165.601 . AB=0.242424;ABP=22.0271;AC=2;AF=0.25;AN=8;AO=8;CIGAR=1X;DP=93;DPB=93;DPRA=0.55;EPP=20.3821;EPPR=187.585;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.964706;PAO=0;PQA=0;PQR=0;PRO=0;QA=321;QR=3399;RO=85;RPL=0;RPP=20.3821;RPPR=187.585;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=85;SRP=187.585;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:41:41,0:41:1645:0:0:0,-12.3422,-148.277 0/1:25:18,7:18:730:7:282:-18.2268,0,-58.4982 0/0:19:19,0:19:738:0:0:0,-5.71957,-66.7411 0/1:8:7,1:7:286:1:39:-1.48832,0,-23.7066 dDocent_Contig_12416 64 . T C 7444.1 . AB=0.563089;ABP=21.3676;AC=4;AF=0.5;AN=8;AO=299;CIGAR=1X;DP=531;DPB=531;DPRA=0;EPP=652.281;EPPR=498.143;GTI=0;LEN=1;MEANALT=1;MQM=59.9699;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.511706;PAIREDR=0.672414;PAO=0;PQA=0;PQR=0;PRO=0;QA=10118;QR=7905;RO=232;RPL=299;RPP=652.281;RPPR=506.792;RPR=0;RUN=1;SAF=299;SAP=652.281;SAR=0;SRF=231;SRP=498.143;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:127:56,71:56:1906:71:2416:-179.472,0,-133.587 0/1:177:67,110:67:2260:110:3691:-279.129,0,-150.382 0/1:131:64,67:64:2184:67:2280:-166.031,0,-157.396 0/1:96:45,51:45:1555:51:1731:-127.176,0,-111.343 dDocent_Contig_12420 26 . T C 372.022 . AB=0.210526;ABP=30.668;AC=1;AF=0.125;AN=8;AO=8;CIGAR=2X3M;DP=38;DPB=38;DPRA=0;EPP=20.3821;EPPR=35.5824;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=6.93889e-18;PAIRED=0.625;PAIREDR=0.866667;PAO=0;PQA=0;PQR=0;PRO=0;QA=322;QR=586;RO=15;RPL=0;RPP=20.3821;RPPR=35.5824;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=15;SRP=35.5824;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:5:0,2,3,0:0:0:2,3,0:80,123,0:-17.1479,-10.5617,-9.95964,-6.98973,0,-6.08664,-17.1479,-10.5617,-6.98973,-17.1479 0|0:10:2,3,2,3:2:78:3,2,3:119,81,114:-12.127,-2.9305,-8.43901,-6.04574,-2.65699,-11.8557,-3.38693,0,-3.11342,-8.8926 0|0:11:7,3,1,0:7:276:3,1,0:114,38,0:-7.24069,0,-21.8179,-6.23138,-19.6063,-28.6489,-9.3479,-22.721,-28.9499,-32.0655 0|0:12:6,3,2,1:6:232:3,2,1:120,80,37:-8.08403,0,-18.1497,-3.29756,-12.4591,-21.747,-6.86816,-16.028,-19.3241,-25.6149 dDocent_Contig_12422 51 . A G 415.406 . AB=0.354167;ABP=11.8771;AC=4;AF=0.5;AN=8;AO=17;CIGAR=1X;DP=48;DPB=48;DPRA=0;EPP=39.9253;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.966667;PAO=0;PQA=0;PQR=0;PRO=0;QA=686;QR=1187;RO=30;RPL=17;RPP=39.9253;RPPR=68.1545;RPR=0;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:7,9:7:277:9:364:-28.3079,0,-20.4817 0/1:23:18,4:18:714:4:162:-8.14339,0,-57.8002 0/1:6:3,3:3:118:3:119:-9.28883,0,-9.1954 0/1:3:2,1:2:78:1:41:-3.19148,0,-6.49969 dDocent_Contig_12425 41 . G A 602.476 . AB=0.571429;ABP=4.56135;AC=4;AF=0.5;AN=8;AO=21;CIGAR=1X;DP=43;DPB=43;DPRA=1.71429;EPP=48.6112;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=812;QR=883;RO=22;RPL=0;RPP=48.6112;RPPR=50.7827;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:10,9:10:397:9:341:-25.3214,0,-30.3653 0/1:16:5,11:5:204:11:430:-34.229,0,-13.9276 0/0:7:7,0:7:282:0:0:0,-2.10721,-25.7528 1/1:1:0,1:0:0:1:41:-4.09457,-0.30103,0 dDocent_Contig_12426 89 . C T 2217.21 . AB=0.72619;ABP=40.3389;AC=5;AF=0.625;AN=8;AO=78;CIGAR=1X;DP=101;DPB=101;DPRA=0;EPP=172.385;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.692308;PAIREDR=0.869565;PAO=0;PQA=0;PQR=0;PRO=0;QA=2790;QR=824;RO=23;RPL=50;RPP=16.4846;RPPR=3.86001;RPR=28;RUN=1;SAF=50;SAP=16.4846;SAR=28;SRF=13;SRP=3.86001;SRR=10;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:47:10,37:10:361:37:1323:-105.221,0,-18.6858 0/1:15:3,12:3:104:12:427:-34.2527,0,-5.18736 1/1:17:0,17:0:0:17:620:-56.1347,-5.11751,0 0/1:22:10,12:10:359:12:420:-31.5106,0,-26.0301 dDocent_Contig_12427 57 . T A 39.7409 . AB=0.25;ABP=7.35324;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X;DP=21;DPB=21;DPRA=1.84615;EPP=7.35324;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.947368;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=761;RO=19;RPL=2;RPP=7.35324;RPPR=44.2683;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:8:6,2:6:235:2:82:-5.37144,0,-19.1097 0/0:2:2,0:2:82:0:0:0,-0.60206,-7.77968 0/0:9:9,0:9:362:0:0:0,-2.70927,-32.9431 0/0:2:2,0:2:82:0:0:0,-0.60206,-7.77968 dDocent_Contig_12428 8 . C G 77.0631 . AB=0.6;ABP=3.44459;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=81;DPB=81;DPRA=0.197368;EPP=9.52472;EPPR=172.385;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=117;QR=2975;RO=78;RPL=0;RPP=9.52472;RPPR=172.385;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=78;SRP=172.385;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:41:41,0:41:1559:0:0:0,-12.3422,-140.579 0/0:29:29,0:29:1112:0:0:0,-8.72987,-100.382 0/0:6:6,0:6:230:0:0:0,-1.80618,-21.0668 0/1:5:2,3:2:74:3:117:-9.40523,0,-5.52028 dDocent_Contig_12429 38 . T C 320.484 . AB=0.25;ABP=7.35324;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1M1D2M1X1M;DP=29;DPB=27;DPRA=2;EPP=3.0103;EPPR=39.9253;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.941176;PAO=0;PQA=0;PQR=0;PRO=0;QA=75;QR=664;RO=17;RPL=0;RPP=7.35324;RPPR=39.9253;RPR=2;RUN=1;SAF=1;SAP=3.0103;SAR=1;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:7:7,0,0:7:274:0,0:0,0:0,-2.10721,-25.0253,-2.10721,-25.0253,-25.0253 0|0:13:9,0,4:9:349:0,4:0,153:-10.2262,-12.9355,-41.607,0,-29.0553,-27.8511 0|0:1:1,0,0:1:41:0,0:0,0:0,-0.30103,-4.09457,-0.30103,-4.09457,-4.09457 1|0:8:0,2,6:0:0:2,6:75,228:-25.2188,-19.0772,-18.4751,-6.51753,0,-4.71135 dDocent_Contig_12430 47 . C T 247.995 . AB=0.45;ABP=3.44459;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X;DP=29;DPB=29;DPRA=6.66667;EPP=22.5536;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=354;QR=795;RO=20;RPL=0;RPP=22.5536;RPPR=46.4397;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:11,9:11:428:9:354:-26.1966,0,-32.8511 0/0:6:6,0:6:244:0:0:0,-1.80618,-22.3388 0/0:2:2,0:2:82:0:0:0,-0.60206,-7.77968 0/0:1:1,0:1:41:0:0:0,-0.30103,-4.09457 dDocent_Contig_12431 144 . C T 1425.54 . AB=0.586667;ABP=7.90335;AC=5;AF=0.625;AN=8;AO=50;CIGAR=1X;DP=81;DPB=81;DPRA=0;EPP=111.584;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1880;QR=1136;RO=31;RPL=0;RPP=111.584;RPPR=70.3259;RPR=50;RUN=1;SAF=0;SAP=111.584;SAR=50;SRF=0;SRP=70.3259;SRR=31;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:49:19,30:19:678:30:1137:-87.8789,0,-46.5809 0/1:19:9,10:9:342:10:383:-29.1055,0,-25.4159 0/1:7:3,4:3:116:4:124:-9.35442,0,-8.71049 1/1:6:0,6:0:0:6:236:-21.6126,-1.80618,0 dDocent_Contig_12432 9 . A G 79.1515 . AB=0.176471;ABP=33.9218;AC=2;AF=0.25;AN=8;AO=6;CIGAR=1X;DP=68;DPB=68;DPRA=1;EPP=16.0391;EPPR=137.642;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=231;QR=2349;RO=62;RPL=0;RPP=16.0391;RPPR=137.642;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:20:20,0:20:767:0:0:0,-6.0206,-69.3573 0/1:25:22,3:22:811:3:116:-3.29195,0,-65.7828 0/0:14:14,0:14:537:0:0:0,-4.21442,-48.6737 0/1:9:6,3:6:234:3:115:-8.01562,0,-18.7218 dDocent_Contig_12433 18 . C T 171.423 . AB=0.368421;ABP=5.8675;AC=2;AF=0.25;AN=8;AO=7;CIGAR=1X;DP=52;DPB=52;DPRA=0.575758;EPP=18.2106;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.955556;PAO=0;PQA=0;PQR=0;PRO=0;QA=283;QR=1765;RO=45;RPL=0;RPP=18.2106;RPPR=100.727;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:30:30,0:30:1195:0:0:0,-9.0309,-107.828 0/1:17:11,6:11:409:6:242:-17.0398,0,-32.0227 0/0:3:3,0:3:121:0:0:0,-0.90309,-11.2802 0/1:2:1,1:1:40:1:41:-3.49251,0,-3.39362 dDocent_Contig_12434 9 . A T 214.885 . AB=0.285714;ABP=16.9698;AC=2;AF=0.25;AN=8;AO=10;CIGAR=1M1X2M1X;DP=94;DPB=95.8;DPRA=0.59322;EPP=24.725;EPPR=178.9;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.975309;PAO=0;PQA=0;PQR=0;PRO=0;QA=383;QR=3116;RO=81;RPL=0;RPP=24.725;RPPR=178.9;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=81;SRP=178.9;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:40:40,0,0:40:1544:0,0:0,0:0,-12.0412,-139.226,-12.0412,-139.226,-139.226 0|1:22:16,4,2:16:613:4,2:155,77:-7.91813,0,-49.1007,-6.41304,-43.9822,-56.114 0|1:13:7,6,0:7:276:6,0:228,0:-16.9683,0,-21.2963,-19.0755,-23.1025,-41.7917 0|0:19:18,0,1:18:683:0,1:0,39:0,-5.41854,-61.4092,-1.82301,-58.2027,-57.9017 dDocent_Contig_12435 12 . G A 85.4274 . AB=0.7;ABP=6.48466;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=62;DPB=62;DPRA=0.576923;EPP=18.2106;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=21;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.509091;PAO=0;PQA=0;PQR=0;PRO=0;QA=231;QR=2173;RO=55;RPL=0;RPP=18.2106;RPPR=122.441;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:22:22,0:22:871:0:0:0,-6.62266,-78.7012 0/0:16:16,0:16:636:0:0:0,-4.81648,-57.5722 0/0:14:14,0:14:564:0:0:0,-4.21442,-51.0998 0/1:10:3,7:3:102:7:231:-10.2417,0,-6.5025 dDocent_Contig_12437 35 . A T 374.896 . AB=0.0909091;ABP=34.9902;AC=1;AF=0.125;AN=8;AO=2;CIGAR=12M1X6M;DP=76;DPB=57.4737;DPRA=0;EPP=7.35324;EPPR=107.241;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=4;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=1870;RO=48;RPL=0;RPP=7.35324;RPPR=107.241;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:18:13,2,3,0,0:13:514:2,3,0,0:76,106,0,0:-4.70299,-2.37397,-44.1067,0,-36.0844,-41.411,-8.61638,-44.7088,-42.3141,-50.9398,-8.61638,-44.7088,-42.3141,-50.9398,-50.9398 0|0:19:10,0,6,0,3:10:392:0,6,0,3:0,225,0,122:-15.3964,-18.4067,-50.6471,0,-32.2259,-30.4197,-18.4067,-50.6471,-32.2259,-50.6471,-8.33295,-40.5806,-22.1593,-40.5806,-39.6775 0|1:22:16,0,3,2,1:16:625:0,3,2,1:0,68,82,41:-1.99739,-6.81387,-58.2477,-1.68931,-53.0544,-52.1514,0,-51.4756,-46.2844,-50.8736,-3.4115,-54.8618,-49.6695,-48.0893,-54.5607 0|0:17:9,0,8,0,0:9:339:0,8,0,0:0,305,0,0:-22.6895,-25.3987,-53.1741,0,-28.1542,-25.7459,-25.3987,-53.1741,-28.1542,-53.1741,-25.3987,-53.1741,-28.1542,-53.1741,-53.1741 dDocent_Contig_12438 12 . C T 52.833 . AB=0.16;ABP=28.1125;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=64;DPB=64;DPRA=1.92308;EPP=11.6962;EPPR=133.299;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.95;PAO=0;PQA=0;PQR=0;PRO=0;QA=157;QR=2403;RO=60;RPL=0;RPP=11.6962;RPPR=133.299;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:22:22,0:22:882:0:0:0,-6.62266,-79.6854 0/1:25:21,4:21:841:4:157:-6.98214,0,-68.4767 0/0:14:14,0:14:563:0:0:0,-4.21442,-51.0124 0/0:3:3,0:3:117:0:0:0,-0.90309,-10.9093 dDocent_Contig_12439 47 . G T 30.006 . AB=0.210526;ABP=16.8392;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=54;DPB=54;DPRA=1.08571;EPP=11.6962;EPPR=9.26414;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.6;PAO=0;PQA=0;PQR=0;PRO=0;QA=114;QR=1891;RO=50;RPL=0;RPP=11.6962;RPPR=111.584;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=31;SRP=9.26414;SRR=19;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5,0:5:198:0:0:0,-1.50515,-18.1963 0/1:19:15,4:15:566:4:114:-4.82403,0,-45.5541 0/0:30:30,0:30:1127:0:0:0,-9.0309,-101.724 ./.:.:.:.:.:.:.:. dDocent_Contig_12440 209 . N G 76.8682 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:81:-7.68573,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_12442 49 . C A 360.715 . AB=0.315789;ABP=19.8106;AC=4;AF=0.5;AN=8;AO=18;CIGAR=1X1M1X;DP=57;DPB=57;DPRA=0;EPP=7.35324;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=0.444444;PAIREDR=0.74359;PAO=0;PQA=0;PQR=0;PRO=0;QA=658;QR=1535;RO=39;RPL=0;RPP=42.0968;RPPR=87.6977;RPR=18;RUN=1;SAF=12;SAP=7.35324;SAR=6;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:21:17,4:17:678:4:142:-6.80558,0,-55.0299 0|1:18:14,4:14:541:4:145:-7.98503,0,-43.6158 0|1:11:3,8:3:118:8:299:-23.9506,0,-7.69156 0|1:7:5,2:5:198:2:72:-4.72803,0,-16.0898 dDocent_Contig_12443 127 . C A 39.7792 . AB=0.666667;ABP=3.73412;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X;DP=32;DPB=32;DPRA=0.310345;EPP=7.35324;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=4.33681e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=69;QR=1003;RO=30;RPL=0;RPP=7.35324;RPPR=68.1545;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=68.1545;SRR=30;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:1:1,0:1:34:0:0:0,-0.30103,-3.39891 0/1:3:1,2:1:35:2:69:-5.64957,0,-2.59554 0/0:19:19,0:19:624:0:0:0,-5.71957,-56.4687 0/0:9:9,0:9:310:0:0:0,-2.70927,-28.2343 dDocent_Contig_12444 17 . G A 293.679 . AB=0.295455;ABP=19.0002;AC=3;AF=0.5;AN=6;AO=13;CIGAR=1X;DP=44;DPB=44;DPRA=0;EPP=31.2394;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=522;QR=1250;RO=31;RPL=0;RPP=31.2394;RPPR=70.3259;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:6,4:6:244:4:161:-11.865,0,-19.3285 0/1:5:3,2:3:118:2:82:-6.27453,0,-9.49736 0/1:29:22,7:22:888:7:279:-16.7513,0,-71.4955 ./.:.:.:.:.:.:.:. dDocent_Contig_12445 48 . G A 2163.35 . AB=0.531915;ABP=4.25774;AC=4;AF=0.5;AN=8;AO=75;CIGAR=1X;DP=141;DPB=141;DPRA=0;EPP=165.871;EPPR=146.327;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2943;QR=2580;RO=66;RPL=0;RPP=165.871;RPPR=146.327;RPR=75;RUN=1;SAF=75;SAP=165.871;SAR=0;SRF=66;SRP=146.327;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:75:41,34:41:1587:34:1334:-97.7581,0,-120.482 0/1:39:10,29:10:407:29:1142:-91.3306,0,-25.2504 0/1:18:10,8:10:384:8:309:-22.7528,0,-29.4915 0/1:9:5,4:5:202:4:158:-11.8912,0,-15.8528 dDocent_Contig_12446 75 . G T 378.684 . AB=0.681818;ABP=9.32731;AC=1;AF=0.166667;AN=6;AO=15;CIGAR=1X;DP=74;DPB=74;DPRA=0.846154;EPP=35.5824;EPPR=131.127;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=511;QR=1959;RO=59;RPL=15;RPP=35.5824;RPPR=131.127;RPR=0;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=59;SRP=131.127;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 0/0:51:51,0:51:1694:0:0:0,-15.3525,-152.742 0/0:1:1,0:1:27:0:0:0,-0.30103,-2.69978 0/1:22:7,15:7:238:15:511:-39.6913,0,-15.1301 dDocent_Contig_12447 7 . T C 76.2719 . AB=0.153846;ABP=43.6001;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X;DP=123;DPB=123;DPRA=2.23684;EPP=22.5536;EPPR=250.558;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.833333;PAO=0;PQA=0;PQR=0;PRO=0;QA=345;QR=4356;RO=114;RPL=0;RPP=22.5536;RPPR=250.558;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=114;SRP=250.558;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:46:43,3:43:1638:3:115:0,-3.12249,-136.959 0/0:19:19,0:19:725:0:0:0,-5.71957,-65.5812 0/1:39:33,6:33:1268:6:230:-9.32616,0,-102.672 0/0:19:19,0:19:725:0:0:0,-5.71957,-65.5791 dDocent_Contig_12448 146 . G A 320.611 . AB=0.257143;ABP=38.8706;AC=3;AF=0.375;AN=8;AO=18;CIGAR=1X;DP=77;DPB=77;DPRA=3.33333;EPP=42.0968;EPPR=128.956;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=637;QR=2046;RO=58;RPL=0;RPP=42.0968;RPPR=128.956;RPR=18;RUN=1;SAF=0;SAP=42.0968;SAR=18;SRF=0;SRP=128.956;SRR=58;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:34:28,5:28:987:5:182:-6.65705,0,-79.0887 0/1:18:9,9:9:330:9:307:-22.5385,0,-24.6311 0/1:18:14,4:14:480:4:148:-8.26343,0,-38.1049 0/0:7:7,0:7:249:0:0:0,-2.10721,-22.754 dDocent_Contig_12449 13 . T G 2128.96 . AB=0.548872;ABP=5.76954;AC=4;AF=0.5;AN=8;AO=73;CIGAR=1X;DP=133;DPB=133;DPRA=0;EPP=161.528;EPPR=133.299;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.972603;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2878;QR=2383;RO=60;RPL=0;RPP=161.528;RPPR=133.299;RPR=73;RUN=1;SAF=73;SAP=161.528;SAR=0;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:9,18:9:361:18:697:-54.9318,0,-24.7261 0/1:55:26,29:26:1029:29:1144:-86.693,0,-76.349 0/1:27:15,12:15:594:12:475:-34.9704,0,-45.6712 0/1:24:10,14:10:399:14:562:-43.699,0,-29.0445 dDocent_Contig_12450 107 . N A 133.114 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=4;CIGAR=1X1M1D3M;DP=4;DPB=3.33333;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=137;QR=0;RO=0;RPL=0;RPP=11.6962;RPPR=0;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:1:0,1:0:0:1:34:-3.39891,-0.30103,0 1|1:3:0,3:0:0:3:103:-9.61002,-0.90309,0 .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. dDocent_Contig_12451 49 . C A 985.91 . AB=0.397727;ABP=11.0053;AC=5;AF=0.625;AN=8;AO=35;CIGAR=4M1X;DP=88;DPB=94;DPRA=0;EPP=48.239;EPPR=105.07;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.942857;PAIREDR=0.914894;PAO=0;PQA=0;PQR=0;PRO=0;QA=1367;QR=1864;RO=47;RPL=4;RPP=48.239;RPPR=105.07;RPR=31;RUN=1;SAF=35;SAP=79.0118;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:26:15,0,11:15:598:0,11:0,416:-29.9545,-34.47,-83.7286,0,-49.6451,-46.3338 0|1:33:22,3,8:22:873:3,8:117,308:-18.6577,-15.6615,-86.6313,0,-62.2536,-69.462 0|1:18:9,0,9:9:358:0,9:0,361:-27.4353,-30.1446,-59.6197,0,-29.8741,-27.1648 1|1:11:1,3,7:1:35:3,7:119,282:-29.9413,-20.4482,-22.3862,-6.99471,0,-7.72363 dDocent_Contig_12452 74 . G A 31.5871 . AB=0.4;ABP=3.44459;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X;DP=65;DPB=65;DPRA=0.25;EPP=7.35324;EPPR=139.813;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=67;QR=2284;RO=63;RPL=2;RPP=7.35324;RPPR=139.813;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=63;SRP=139.813;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:24:24,0:24:863:0:0:0,-7.22472,-77.9895 0/0:21:21,0:21:769:0:0:0,-6.32163,-69.5378 0/0:15:15,0:15:541:0:0:0,-4.51545,-49.0258 0/1:5:3,2:3:111:2:67:-4.85738,0,-8.84877 dDocent_Contig_12453 41 . G T 179.858 . AB=0.208333;ABP=20.744;AC=4;AF=0.5;AN=8;AO=5;CIGAR=1X2M1X2M1X3M1X1M11I3M1X;DP=26;DPB=34.125;DPRA=4;EPP=13.8677;EPPR=35.5824;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=198;QR=580;RO=15;RPL=5;RPP=13.8677;RPPR=35.5824;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=15;SRP=35.5824;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:9:6,0,3:6:237:0,3:0,119:-8.38612,-10.1923,-29.6941,0,-19.8975,-18.9944 1|1:6:0,3,1:0:0:3,1:118,39:-12.9175,-3.20753,-2.30444,-9.71163,0,-9.4106 0|1:9:7,1,1:7:270:1,1:40,40:-1.18787,0,-21.8576,0,-18.8618,-21.8576 0|0:2:2,0,0:2:73:0,0:0,0:0,-0.60206,-6.93007,-0.60206,-6.93007,-6.93007 dDocent_Contig_12454 9 . A G 62.9124 . AB=0.147059;ABP=39.7976;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=112;DPB=112;DPRA=1.30769;EPP=13.8677;EPPR=226.753;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=0;PAIREDR=0.794393;PAO=0;PQA=0;PQR=0;PRO=0;QA=195;QR=4099;RO=107;RPL=0;RPP=13.8677;RPPR=235.358;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=106;SRP=226.753;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:34:29,5:29:1115:5:195:-7.68918,0,-90.419 0/0:16:16,0:16:622:0:0:0,-4.81648,-56.3201 0/0:35:35,0:35:1324:0:0:0,-10.536,-119.449 0/0:27:27,0:27:1038:0:0:0,-8.12781,-93.7278 dDocent_Contig_12456 28 . T C 1195.83 . AB=0.467391;ABP=3.86001;AC=4;AF=0.5;AN=8;AO=43;CIGAR=1X;DP=92;DPB=92;DPRA=0;EPP=96.3836;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=0.767442;PAIREDR=0.795918;PAO=0;PQA=0;PQR=0;PRO=0;QA=1703;QR=1985;RO=49;RPL=0;RPP=96.3836;RPPR=109.412;RPR=43;RUN=1;SAF=43;SAP=96.3836;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:43:23,20:23:935:20:783:-57.8346,0,-71.5067 0/1:12:8,4:8:322:4:163:-11.4461,0,-25.7355 0/1:25:13,12:13:523:12:486:-36.5659,0,-39.8894 0/1:12:5,7:5:205:7:271:-21.1349,0,-15.2226 dDocent_Contig_12457 16 . A T 686.75 . AB=0.231343;ABP=87.0171;AC=4;AF=0.5;AN=8;AO=31;CIGAR=2X2M;DP=134;DPB=134;DPRA=0;EPP=70.3259;EPPR=194.1;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=0.451613;PAIREDR=0.454545;PAO=0;PQA=0;PQR=0;PRO=0;QA=1239;QR=3481;RO=88;RPL=0;RPP=70.3259;RPPR=194.1;RPR=31;RUN=1;SAF=31;SAP=70.3259;SAR=0;SRF=88;SRP=194.1;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:46:30,5,11,0:30:1187:5,11,0:202,437,0:-26.9395,-19.3149,-115.499,0,-81.0291,-94.3723,-35.9704,-117.005,-97.6837,-133.659 0|1:32:21,0,11,0:21:835:0,11,0:0,437,0:-30.0507,-36.3723,-105.121,0,-69.1456,-65.8343,-36.3723,-105.121,-69.1456,-105.121 0|1:49:33,0,8,4:33:1297:0,8,4:0,325,149:-16.8822,-26.8162,-133.493,0,-106.685,-104.277,-14.6329,-121.304,-94.4961,-120.1 0|1:7:4,0,1,0:4:162:0,1,0:0,40,0:-2.12591,-3.33003,-16.7311,0,-13.4315,-13.1305,-3.33003,-16.7311,-13.4315,-16.7311 dDocent_Contig_12458 67 . T G 1140.65 . AB=0.164179;ABP=68.6406;AC=1;AF=0.125;AN=8;AO=11;CIGAR=8M1X8M;DP=104;DPB=103.176;DPRA=0;EPP=26.8965;EPPR=107.241;GTI=0;LEN=1;MEANALT=3.66667;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=420;QR=1773;RO=48;RPL=11;RPP=26.8965;RPPR=107.241;RPR=0;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:49:33,0,6,8:33:1224:0,6,8:0,233,307:-15.2846,-25.2186,-125.379,-6.06103,-106.232,-104.426,0,-100.176,-81.0286,-97.7678 0|0:37:14,23,0,0:14:511:23,0,0:876,0,0:-68.0023,0,-35.1875,-72.2167,-42.1112,-113.957,-72.2167,-42.1112,-113.957,-113.957 0|0:10:0,4,4,1:0:0:4,4,1:154,151,39:-25.138,-12.4731,-11.269,-12.7454,0,-11.5413,-21.9278,-9.25491,-9.52822,-21.6267 0|0:8:1,3,2,2:1:38:3,2,2:122,77,74:-12.9837,-3.2091,-5.42303,-6.96525,0,-9.47772,-7.23908,-0.277805,-4.0361,-9.75057 dDocent_Contig_12460 114 . A G 138.858 . AB=0.245283;ABP=32.8783;AC=4;AF=0.5;AN=8;AO=13;CIGAR=1X;DP=53;DPB=53;DPRA=0;EPP=31.2394;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=31.4615;MQMR=57.125;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.875;PAO=0;PQA=0;PQR=0;PRO=0;QA=449;QR=1379;RO=40;RPL=0;RPP=31.2394;RPPR=89.8692;RPR=13;RUN=1;SAF=0;SAP=31.2394;SAR=13;SRF=0;SRP=89.8692;SRR=40;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:23,5:23:800:5:175:-4.96025,0,-61.3602 0/1:16:12,4:12:405:4:140:-6.37105,0,-31.9582 0/1:6:4,2:4:140:2:70:-3.93877,0,-11.0809 0/1:3:1,2:1:34:2:64:-4.59976,0,-0.591647 dDocent_Contig_12461 22 . A G 74.8277 . AB=0.222222;ABP=15.074;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=67;DPB=67;DPRA=1.10204;EPP=11.6962;EPPR=139.813;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.936508;PAO=0;PQA=0;PQR=0;PRO=0;QA=158;QR=2500;RO=63;RPL=0;RPP=11.6962;RPPR=139.813;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=63;SRP=139.813;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:9:9,0:9:362:0:0:0,-2.70927,-32.9442 0/0:33:33,0:33:1302:0:0:0,-9.93399,-117.455 0/1:18:14,4:14:559:4:158:-9.18173,0,-45.2337 0/0:7:7,0:7:277:0:0:0,-2.10721,-25.2972 dDocent_Contig_12463 20 . G A 38.2716 . AB=0.097561;ABP=349.069;AC=3;AF=0.375;AN=8;AO=32;CIGAR=1X;DP=382;DPB=382;DPRA=0;EPP=72.4974;EPPR=763.026;GTI=0;LEN=1;MEANALT=1;MQM=59.9062;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.34375;PAIREDR=0.434286;PAO=0;PQA=0;PQR=0;PRO=0;QA=1193;QR=13438;RO=350;RPL=0;RPP=72.4974;RPPR=763.026;RPR=32;RUN=1;SAF=32;SAP=72.4974;SAR=0;SRF=350;SRP=763.026;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:71:64,7:64:2464:7:260:-2.37758,0,-200.57 0/1:135:122,13:122:4636:13:501:-4.79894,0,-376.622 0/0:136:128,8:128:4937:8:294:0,-14.132,-417.507 0/1:40:36,4:36:1401:4:138:-0.71611,0,-114.314 dDocent_Contig_12464 20 . C T 324.389 . AB=0.342105;ABP=11.239;AC=2;AF=0.25;AN=8;AO=16;CIGAR=1X;DP=95;DPB=95;DPRA=3.625;EPP=37.7539;EPPR=174.557;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.987342;PAO=0;PQA=0;PQR=0;PRO=0;QA=637;QR=3180;RO=79;RPL=0;RPP=37.7539;RPPR=174.557;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=79;SRP=174.557;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:12,5:12:485:5:205:-13.7175,0,-38.8839 0/1:21:13,8:13:526:8:312:-22.1193,0,-41.365 0/0:49:46,3:46:1843:3:120:0,-3.56316,-154.886 0/0:8:8,0:8:326:0:0:0,-2.40824,-29.7099 dDocent_Contig_12465 6 . C A 48.8745 . AB=0.125;ABP=61.6401;AC=2;AF=0.25;AN=8;AO=8;CIGAR=1X;DP=101;DPB=101;DPRA=1.19697;EPP=20.3821;EPPR=204.957;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.83871;PAO=0;PQA=0;PQR=0;PRO=0;QA=323;QR=3617;RO=93;RPL=0;RPP=20.3821;RPPR=204.957;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=93;SRP=204.957;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:31:29,2:29:1121:2:82:0,-1.55225,-93.4101 0/0:22:22,0:22:858:0:0:0,-6.62266,-77.5416 0/1:32:29,3:29:1136:3:119:-1.46205,0,-92.9045 0/1:16:13,3:13:502:3:122:-6.55601,0,-40.7121 dDocent_Contig_12466 22 . T A 78.9777 . AB=0.285714;ABP=5.80219;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1M1D4M1X1M1X1M;DP=42;DPB=41.1;DPRA=2.33333;EPP=3.0103;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=33;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=57;QR=1228;RO=32;RPL=0;RPP=7.35324;RPPR=72.4974;RPR=2;RUN=1;SAF=1;SAP=3.0103;SAR=1;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:15:9,0,4:9:349:0,4:0,140:-8.26998,-10.9792,-39.7364,0,-28.9266,-27.7225 0|0:17:15,0,2:15:571:0,2:0,75:-1.6082,-6.12365,-52.9772,0,-47.2106,-46.6086 0|1:7:5,2,0:5:195:2,0:57,0:-2.97318,0,-15.8168,-4.47833,-16.4189,-20.5949 0|0:3:3,0,0:3:113:0,0:0,0:0,-0.90309,-10.5393,-0.90309,-10.5393,-10.5393 dDocent_Contig_12467 59 . C T 212.957 . AB=0.261905;ABP=23.691;AC=4;AF=0.5;AN=8;AO=11;CIGAR=1X;DP=42;DPB=42;DPRA=0;EPP=26.8965;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.967742;PAO=0;PQA=0;PQR=0;PRO=0;QA=441;QR=1222;RO=31;RPL=11;RPP=26.8965;RPPR=70.3259;RPR=0;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:5:3,2:3:120:2:73:-5.42404,0,-9.68216 0/1:10:8,2:8:311:2:81:-4.67543,0,-25.3421 0/1:20:14,6:14:559:6:246:-16.4995,0,-44.6313 0/1:7:6,1:6:232:1:41:-1.98736,0,-19.1386 dDocent_Contig_12468 40 . T C 2423.61 . AB=0.826087;ABP=87.981;AC=4;AF=0.5;AN=8;AO=76;CIGAR=1X;DP=92;DPB=92;DPRA=0;EPP=168.042;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.907895;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3055;QR=649;RO=16;RPL=0;RPP=168.042;RPPR=37.7539;RPR=76;RUN=1;SAF=76;SAP=168.042;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:35:5,30:5:202:30:1207:-98.3641,0,-8.02582 0/1:23:3,20:3:123:20:800:-65.3928,0,-4.5411 0/1:23:7,16:7:283:16:645:-51.4604,0,-18.9193 0/1:11:1,10:1:41:10:403:-33.3182,0,-0.783237 dDocent_Contig_12469 25 . C T 69.6453 . AB=0.333333;ABP=5.18177;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=39;DPB=39;DPRA=0.9;EPP=9.52472;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.805556;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=1470;RO=36;RPL=0;RPP=9.52472;RPPR=81.1833;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:21:21,0:21:858:0:0:0,-6.32163,-77.5284 0/0:2:2,0:2:82:0:0:0,-0.60206,-7.77968 0/0:7:7,0:7:286:0:0:0,-2.10721,-26.1148 0/1:9:6,3:6:244:3:122:-8.66322,0,-19.6293 dDocent_Contig_12470 29 . C A 268.915 . AB=0.75;ABP=9.52472;AC=2;AF=0.25;AN=8;AO=10;CIGAR=1X;DP=59;DPB=59;DPRA=0.453333;EPP=24.725;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=409;QR=1958;RO=49;RPL=0;RPP=24.725;RPPR=109.412;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:25:25,0:25:1007:0:0:0,-7.52575,-90.9246 0/1:10:2,8:2:82:8:327:-26.7898,0,-4.76938 0/0:22:21,1:21:828:1:41:0,-2.52809,-70.7366 0/1:2:1,1:1:41:1:41:-3.49251,0,-3.49251 dDocent_Contig_12471 16 . C A 58.9236 . AB=0.190476;ABP=20.4855;AC=2;AF=0.25;AN=8;AO=4;CIGAR=1X;DP=55;DPB=55;DPRA=0.617647;EPP=11.6962;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.75;PAIREDR=0.588235;PAO=0;PQA=0;PQR=0;PRO=0;QA=164;QR=2070;RO=51;RPL=0;RPP=11.6962;RPPR=113.755;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:15:15,0:15:614:0:0:0,-4.51545,-55.5965 0/0:19:19,0:19:764:0:0:0,-5.71957,-69.0806 0/1:15:12,3:12:488:3:123:-6.94934,0,-39.7558 0/1:6:5,1:5:204:1:41:-2.28839,0,-16.9379 dDocent_Contig_12473 34 . C T 81.0541 . AB=0.166667;ABP=31.9633;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=87;DPB=87;DPRA=1.57895;EPP=13.8677;EPPR=181.071;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=205;QR=3276;RO=82;RPL=0;RPP=13.8677;RPPR=181.071;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=82;SRP=181.071;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:27:27,0:27:1081:0:0:0,-8.12781,-97.5797 0/1:30:25,5:25:994:5:205:-9.80411,0,-80.7277 0/0:28:28,0:28:1125:0:0:0,-8.42884,-101.534 0/0:2:2,0:2:76:0:0:0,-0.60206,-7.21354 dDocent_Contig_12475 90 . A C 419.703 . AB=0.105263;ABP=105.87;AC=2;AF=0.25;AN=8;AO=8;CIGAR=1M1X6M;DP=103;DPB=82.375;DPRA=0;EPP=20.3821;EPPR=89.8692;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=0.875;PAIREDR=0.85;PAO=0;PQA=0;PQR=0;PRO=0;QA=277;QR=1357;RO=40;RPL=6;RPP=7.35324;RPPR=3.22745;RPR=2;RUN=1;SAF=6;SAP=7.35324;SAR=2;SRF=19;SRP=3.22745;SRR=21;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:38:12,10,15,1:12:406:10,15,1:327,368,35:-20.9035,-3.07602,-33.0307,0,-11.5549,-28.4315,-21.6639,-33.1904,-30.0974,-54.3113 0|0:27:14,5,8,0:14:476:5,8,0:169,209,0:-10.2764,-4.1077,-41.2809,0,-28.3156,-36.2593,-14.4908,-42.7861,-38.6676,-53.151 0|1:20:11,1,5,3:11:371:1,5,3:34,125,104:-5.18294,-6.59402,-36.4016,-0.15716,-28.3407,-28.732,0,-28.2419,-21.7803,-29.2383 0|1:18:3,4,7,4:3:104:4,7,4:136,168,138:-12.9341,-4.9614,-12.2295,-2.76187,-2.37828,-9.11744,-2.59663,-2.19537,0,-9.86979 dDocent_Contig_12478 98 . N C 150.587 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=4;CIGAR=2X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=7.37776;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=163;QR=0;RO=0;RPL=4;RPP=11.6962;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. 1|1:4:0,4:0:0:4:163:-15.0584,-1.20412,0 .:.:.:.:.:.:.:. dDocent_Contig_12479 43 . G A 77.6826 . AB=0;ABP=0;AC=2;AF=0.333333;AN=6;AO=2;CIGAR=1X;DP=19;DPB=19;DPRA=0.235294;EPP=7.35324;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.69407e-21;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=80;QR=664;RO=17;RPL=0;RPP=7.35324;RPPR=39.9253;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:7:7,0:7:285:0:0:0,-2.10721,-26.0244 0/0:10:10,0:10:379:0:0:0,-3.0103,-34.4519 1/1:2:0,2:0:0:2:80:-7.59179,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_12480 16 . C T 116.09 . AB=0.193548;ABP=28.2974;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=62;DPB=62;DPRA=3;EPP=16.0391;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=244;QR=2237;RO=56;RPL=0;RPP=16.0391;RPPR=124.613;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:25,6:25:1003:6:244:-13.0069,0,-81.2267 0/0:15:15,0:15:611:0:0:0,-4.51545,-55.3275 0/0:7:7,0:7:271:0:0:0,-2.10721,-24.7522 0/0:9:9,0:9:352:0:0:0,-2.70927,-32.0324 dDocent_Contig_12481 142 . C T 191.362 . AB=0;ABP=0;AC=2;AF=0.25;AN=8;AO=5;CIGAR=1X;DP=21;DPB=21;DPRA=0.9375;EPP=13.8677;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.875;PAO=0;PQA=0;PQR=0;PRO=0;QA=205;QR=630;RO=16;RPL=0;RPP=13.8677;RPPR=37.7539;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=37.7539;SRR=16;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5,0:5:192:0:0:0,-1.50515,-17.6438 0/0:6:6,0:6:237:0:0:0,-1.80618,-21.7011 1/1:5:0,5:0:0:5:205:-18.835,-1.50515,0 0/0:5:5,0:5:201:0:0:0,-1.50515,-18.4705 dDocent_Contig_12482 14 . C A 611.408 . AB=0.28125;ABP=42.9111;AC=4;AF=0.5;AN=8;AO=27;CIGAR=1X;DP=96;DPB=96;DPRA=0;EPP=61.6401;EPPR=152.842;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1065;QR=2744;RO=69;RPL=0;RPP=61.6401;RPPR=152.842;RPR=27;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=69;SRP=152.842;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:18,13:18:716:13:521:-37.9048,0,-55.4325 0/1:55:43,12:43:1737:12:465:-25.6373,0,-139.988 0/1:4:3,1:3:99:1:41:-2.89045,0,-8.02675 0/1:6:5,1:5:192:1:38:-1.99109,0,-15.8404 dDocent_Contig_12483 18 . C T 93.2939 . AB=0.152174;ABP=51.3492;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=67;DPB=67;DPRA=6.57143;EPP=18.2106;EPPR=133.299;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=269;QR=2418;RO=60;RPL=0;RPP=18.2106;RPPR=133.299;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:46:39,7:39:1574:7:269:-10.7272,0,-128.039 0/0:4:4,0:4:162:0:0:0,-1.20412,-14.9667 0/0:12:12,0:12:489:0:0:0,-3.61236,-44.3613 0/0:5:5,0:5:193:0:0:0,-1.50515,-17.7387 dDocent_Contig_12484 12 . A G 601.802 . AB=0.606061;ABP=6.23461;AC=1;AF=0.125;AN=8;AO=20;CIGAR=1X3M1X;DP=73;DPB=73;DPRA=2.475;EPP=46.4397;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=791;QR=2068;RO=53;RPL=0;RPP=46.4397;RPPR=118.098;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:33:13,20:13:512:20:791:-61.5781,0,-36.4923 0|0:3:3,0:3:120:0:0:0,-0.90309,-11.1879 0|0:27:27,0:27:1064:0:0:0,-8.12781,-96.0504 0|0:10:10,0:10:372:0:0:0,-3.0103,-33.8228 dDocent_Contig_12485 125 . T C 73.0315 . AB=0.35;ABP=10.8276;AC=1;AF=0.125;AN=8;AO=35;CIGAR=1X;DP=222;DPB=222;DPRA=0;EPP=79.0118;EPPR=366.807;GTI=0;LEN=1;MEANALT=1;MQM=16.0857;MQMR=37.6417;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=0;PAIREDR=0.0855615;PAO=0;PQA=0;PQR=0;PRO=0;QA=1175;QR=5900;RO=187;RPL=0;RPP=79.0118;RPPR=409.076;RPR=35;RUN=1;SAF=0;SAP=79.0118;SAR=35;SRF=5;SRP=366.807;SRR=182;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:61:53,8:53:1630:8:270:0,-7.55428,-106.988 0/0:99:87,12:87:2754:12:388:0,-13.344,-185.748 0/1:40:26,14:26:809:14:482:-9.00212,0,-39.8 0/0:22:21,1:21:707:1:35:0,-4.92935,-37.8942 dDocent_Contig_12486 122 . T G 168.398 . AB=0.15;ABP=24.2907;AC=4;AF=0.5;AN=8;AO=3;CIGAR=1X1M;DP=36;DPB=36;DPRA=0;EPP=9.52472;EPPR=52.9542;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=111;QR=804;RO=23;RPL=0;RPP=9.52472;RPPR=52.9542;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=52.9542;SRR=23;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:7:5,1,1:5:175:1,1:37,37:-1.52282,-0.0190635,-13.9399,0,-11.2106,-13.9225 0|1:13:7,4,2:7:245:4,2:148,74:-9.9889,0,-18.7142,-6.04197,-13.8599,-25.3612 0|1:9:6,3,0:6:208:3,0:109,0:-7.45873,0,-16.3492,-9.26491,-17.2523,-26.1596 0|1:7:5,2,0:5:176:2,0:72,0:-4.72437,0,-14.078,-6.22952,-14.6801,-20.5522 dDocent_Contig_12487 167 . G A 72.8925 . AB=0.375;ABP=4.09604;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=33;DPB=33;DPRA=0.96;EPP=9.52472;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=119;QR=1153;RO=30;RPL=3;RPP=9.52472;RPPR=68.1545;RPR=0;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=68.1545;SRR=30;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:8:5,3:5:196:3:119:-8.68715,0,-15.6067 0/0:8:8,0:8:300:0:0:0,-2.40824,-27.3519 0/0:5:5,0:5:188:0:0:0,-1.50515,-17.2822 0/0:12:12,0:12:469:0:0:0,-3.61236,-42.5606 dDocent_Contig_12488 14 . G A 505.129 . AB=0.168539;ABP=172.873;AC=2;AF=0.25;AN=8;AO=34;CIGAR=1X;DP=284;DPB=284;DPRA=0;EPP=76.8404;EPPR=545.878;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.705882;PAIREDR=0.692;PAO=0;PQA=0;PQR=0;PRO=0;QA=1346;QR=9893;RO=250;RPL=0;RPP=76.8404;RPPR=545.878;RPR=34;RUN=1;SAF=34;SAP=76.8404;SAR=0;SRF=250;SRP=545.878;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:131:108,23:108:4265:23:919:-43.5816,0,-344.387 0/0:80:77,3:77:3015:3:118:0,-13.0799,-260.462 0/1:47:40,7:40:1606:7:268:-10.3292,0,-130.627 0/0:26:25,1:25:1007:1:41:0,-3.73221,-86.8311 dDocent_Contig_12489 98 . N A 97.0363 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1M1D13M1X;DP=3;DPB=2.8125;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=104;QR=0;RO=0;RPL=3;RPP=9.52472;RPPR=0;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:3:0,3:0:0:3:104:-9.70309,-0.90309,0 .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. dDocent_Contig_12492 15 . G A 568.865 . AB=0.360656;ABP=13.2981;AC=2;AF=0.25;AN=8;AO=22;CIGAR=1X;DP=103;DPB=103;DPRA=1.45238;EPP=50.7827;EPPR=178.9;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=866;QR=3166;RO=81;RPL=0;RPP=50.7827;RPPR=178.9;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=81;SRP=178.9;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:14,17:14:558:17:665:-50.8448,0,-41.232 0/1:30:25,5:25:1000:5:201:-9.43962,0,-81.2675 0/0:23:23,0:23:878:0:0:0,-6.92369,-79.3309 0/0:19:19,0:19:730:0:0:0,-5.71957,-66.0215 dDocent_Contig_12493 28 . C T 428.56 . AB=0.294118;ABP=28.0461;AC=4;AF=0.5;AN=8;AO=20;CIGAR=1X;DP=68;DPB=68;DPRA=0;EPP=46.4397;EPPR=102.898;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=771;QR=1827;RO=46;RPL=0;RPP=46.4397;RPPR=102.898;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:19,3:19:758:3:123:-4.84213,0,-61.9209 0/1:33:20,12:20:789:12:446:-30.451,0,-61.2959 0/1:9:5,3:5:203:3:121:-8.479,0,-15.8523 0/1:4:2,2:2:77:2:81:-6.48161,0,-6.10408 dDocent_Contig_12495 15 . T C 109.77 . AB=0.0169492;ABP=122.589;AC=0;AF=0;AN=8;AO=4;CIGAR=1X1M3X2M2X10M1X4M;DP=169;DPB=165.667;DPRA=0.989796;EPP=11.6962;EPPR=241.872;GTI=0;LEN=1;MEANALT=5.5;MQM=13.5;MQMR=60;NS=4;NUMALT=4;ODDS=0;PAIRED=0;PAIREDR=0.172727;PAO=0;PQA=0;PQR=0;PRO=0;QA=54;QR=4253;RO=110;RPL=0;RPP=11.6962;RPPR=241.872;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=110;SRP=241.872;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:38:27,7,0,3,0:27:1055:7,0,3,0:63,0,39,0:0,-6.35405,-91.1683,-8.12781,-93.2755,-95.0645,-6.29643,-91.4714,-93.2501,-92.347,-8.12781,-93.2755,-95.0645,-93.2501,-95.0645 0|0:59:32,9,5,1,7:32:1230:9,5,1,7:77,55,15,239:-9.79087,-17.4292,-115.784,-17.2637,-116.339,-116.837,-18.6417,-117.713,-117.562,-119.422,0,-99.1255,-98.9717,-100.351,-99.0247 0|0:49:37,5,1,0,3:37:1420:5,1,0,3:45,12,0,115:0,-9.93988,-125.014,-10.6301,-126.005,-126.988,-11.1381,-126.519,-127.289,-127.804,-1.64852,-117.08,-117.848,-118.363,-117.46 0|0:23:14,1,2,0,3:14:548:1,2,0,3:5,24,0,107:-4.58371,-8.87496,-53.7381,-7.78932,-53.022,-52.3496,-8.79813,-54.0391,-52.9517,-53.9712,0,-45.313,-44.2268,-45.2434,-44.3403 dDocent_Contig_12496 39 . G T 122.826 . AB=0.166667;ABP=55.1256;AC=3;AF=0.375;AN=8;AO=9;CIGAR=1X;DP=66;DPB=66;DPRA=1.5;EPP=22.5536;EPPR=126.784;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.666667;PAIREDR=0.701754;PAO=0;PQA=0;PQR=0;PRO=0;QA=364;QR=2256;RO=57;RPL=0;RPP=22.5536;RPPR=126.784;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:20,4:20:778:4:160:-7.55908,0,-63.1096 0/0:12:12,0:12:474:0:0:0,-3.61236,-43.0097 0/1:17:14,3:14:561:3:123:-6.34728,0,-45.7136 0/1:13:11,2:11:443:2:81:-3.77234,0,-36.3119 dDocent_Contig_12497 9 . A T 436.468 . AB=0.276316;ABP=36.0395;AC=4;AF=0.5;AN=8;AO=21;CIGAR=1X;DP=76;DPB=76;DPRA=0;EPP=48.6112;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=0.619048;PAIREDR=0.909091;PAO=0;PQA=0;PQR=0;PRO=0;QA=805;QR=2089;RO=55;RPL=0;RPP=48.6112;RPPR=122.441;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:13,7:13:502:7:273:-18.9174,0,-39.5079 0/1:27:22,5:22:834:5:184:-8.78881,0,-67.2534 0/1:20:17,3:17:645:3:117:-4.88978,0,-52.3644 0/1:9:3,6:3:108:6:231:-18.4486,0,-7.36391 dDocent_Contig_12498 8 . C A 35.5878 . AB=0.214286;ABP=12.937;AC=2;AF=0.333333;AN=6;AO=3;CIGAR=1X;DP=21;DPB=21;DPRA=1;EPP=9.52472;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=57.3333;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=116;QR=696;RO=18;RPL=0;RPP=9.52472;RPPR=42.0968;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:6:5,1:5:192:1:39:-2.07258,0,-15.8438 0/0:7:7,0:7:270:0:0:0,-2.10721,-24.6655 0/1:8:6,2:6:234:2:77:-4.9009,0,-19.0229 ./.:.:.:.:.:.:.:. dDocent_Contig_12499 127 . C T 62.0624 . AB=0;ABP=0;AC=2;AF=0.25;AN=8;AO=3;CIGAR=1X;DP=27;DPB=27;DPRA=0.928571;EPP=9.52472;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=66;QR=789;RO=24;RPL=0;RPP=9.52472;RPPR=55.1256;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=55.1256;SRR=24;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:59:-5.60384,-0.60206,0 0/0:11:10,1:10:330:1:7:0,-2.61133,-29.3212 0/0:4:4,0:4:113:0:0:0,-1.20412,-10.4492 0/0:10:10,0:10:346:0:0:0,-3.0103,-31.4743 dDocent_Contig_12500 155 . A G 38.6629 . AB=0.666667;ABP=3.73412;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X;DP=40;DPB=40;DPRA=0.243243;EPP=7.35324;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=68;QR=1535;RO=38;RPL=0;RPP=7.35324;RPPR=85.5263;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=85.5263;SRR=38;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:8:8,0:8:324:0:0:0,-2.40824,-29.5294 0/0:23:23,0:23:933:0:0:0,-6.92369,-84.2723 0/1:3:1,2:1:38:2:68:-5.55154,0,-2.89418 0/0:6:6,0:6:240:0:0:0,-1.80618,-21.9751 dDocent_Contig_12501 117 . C G 83.3442 . AB=0.277778;ABP=10.7311;AC=2;AF=0.25;AN=8;AO=5;CIGAR=1X;DP=26;DPB=26;DPRA=2.25;EPP=13.8677;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=39;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=169;QR=682;RO=21;RPL=0;RPP=13.8677;RPPR=48.6112;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=0;SRP=48.6112;SRR=21;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:8:4,4:4:138:4:136:-9.73039,0,-10.3522 0/0:6:6,0:6:194:0:0:0,-1.80618,-17.7779 0/1:10:9,1:9:288:1:33:-0.192421,0,-23.2202 0/0:2:2,0:2:62:0:0:0,-0.60206,-5.88849 dDocent_Contig_12502 82 . A C 104.814 . AB=0.357143;ABP=5.49198;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=43;DPB=43;DPRA=1.44828;EPP=13.8677;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.921053;PAO=0;PQA=0;PQR=0;PRO=0;QA=175;QR=1311;RO=38;RPL=5;RPP=13.8677;RPPR=85.5263;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:9,5:9:313:5:175:-11.8793,0,-24.2926 0/0:5:5,0:5:174:0:0:0,-1.50515,-16.002 0/0:15:15,0:15:511:0:0:0,-4.51545,-46.3146 0/0:9:9,0:9:313:0:0:0,-2.70927,-28.5071 dDocent_Contig_12504 13 . T A 1092.62 . AB=0.637931;ABP=12.5947;AC=4;AF=0.5;AN=8;AO=37;CIGAR=1X;DP=58;DPB=58;DPRA=0;EPP=83.3548;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.945946;PAIREDR=0.952381;PAO=0;PQA=0;PQR=0;PRO=0;QA=1474;QR=837;RO=21;RPL=0;RPP=83.3548;RPPR=48.6112;RPR=37;RUN=1;SAF=37;SAP=83.3548;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:6,18:6:246:18:725:-58.3496,0,-15.2954 0/1:17:12,5:12:473:5:193:-12.6228,0,-37.7979 0/1:15:2,13:2:77:13:516:-42.2694,0,-2.79275 0/1:2:1,1:1:41:1:40:-3.39362,0,-3.49251 dDocent_Contig_12505 93 . A G 70.9131 . AB=0.285714;ABP=8.59409;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=38;DPB=38;DPRA=1.16667;EPP=11.6962;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.941176;PAO=0;PQA=0;PQR=0;PRO=0;QA=142;QR=1185;RO=34;RPL=2;RPP=3.0103;RPPR=4.03217;RPR=2;RUN=1;SAF=2;SAP=3.0103;SAR=2;SRF=19;SRP=4.03217;SRR=15;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:2:2,0:2:69:0:0:0,-0.60206,-6.55266 0/1:14:10,4:10:352:4:142:-8.91485,0,-27.8044 0/0:22:22,0:22:764:0:0:0,-6.62266,-69.0802 ./.:.:.:.:.:.:.:. dDocent_Contig_12506 32 . A G 286.645 . AB=0.235294;ABP=44.396;AC=4;AF=0.5;AN=8;AO=16;CIGAR=1X;DP=68;DPB=68;DPRA=0;EPP=37.7539;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=611;QR=2081;RO=52;RPL=0;RPP=37.7539;RPPR=115.927;RPR=16;RUN=1;SAF=0;SAP=37.7539;SAR=16;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:19,4:19:759:4:156:-7.4936,0,-61.7077 0/1:12:7,5:7:286:5:187:-13.5796,0,-22.5025 0/1:17:15,2:15:600:2:78:-2.28596,0,-49.2207 0/1:16:11,5:11:436:5:190:-12.6505,0,-34.778 dDocent_Contig_12507 24 . A T 41.3754 . AB=0.5;ABP=3.0103;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X;DP=43;DPB=43;DPRA=0.307692;EPP=7.35324;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=4.33681e-19;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=71;QR=1627;RO=41;RPL=0;RPP=7.35324;RPPR=92.0407;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:4:2,2:2:82:2:71:-5.53531,0,-6.57556 0/0:20:20,0:20:779:0:0:0,-6.0206,-70.4275 0/0:16:16,0:16:643:0:0:0,-4.81648,-58.2036 0/0:3:3,0:3:123:0:0:0,-0.90309,-11.4648 dDocent_Contig_12508 16 . C T 347.661 . AB=0.2;ABP=73.366;AC=2;AF=0.25;AN=8;AO=23;CIGAR=1X;DP=156;DPB=156;DPRA=0;EPP=52.9542;EPPR=291.816;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.826087;PAIREDR=0.87218;PAO=0;PQA=0;PQR=0;PRO=0;QA=898;QR=5296;RO=133;RPL=0;RPP=52.9542;RPPR=291.816;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=133;SRP=291.816;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:43:36,7:36:1458:7:280:-12.6273,0,-118.517 0/1:47:36,11:36:1435:11:437:-25.536,0,-115.248 0/0:44:41,3:41:1623:3:113:0,-2.7084,-135.764 0/0:22:20,2:20:780:2:68:0,-0.168027,-64.0631 dDocent_Contig_12509 42 . A G 381.415 . AB=0.390244;ABP=7.30028;AC=3;AF=0.375;AN=8;AO=17;CIGAR=1X;DP=62;DPB=62;DPRA=0;EPP=39.9253;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=650;QR=1776;RO=45;RPL=0;RPP=39.9253;RPPR=100.727;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:21:20,1:20:785:1:41:0,-2.22706,-66.873 0/1:19:16,3:16:633:3:122:-5.65292,0,-51.5858 0/1:12:3,9:3:120:9:356:-28.7889,0,-7.57495 0/1:10:6,4:6:238:4:131:-9.09763,0,-18.783 dDocent_Contig_12511 41 . T C 61.3501 . AB=0.16;ABP=28.1125;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=40;DPB=40;DPRA=5;EPP=11.6962;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.944444;PAO=0;PQA=0;PQR=0;PRO=0;QA=163;QR=1456;RO=36;RPL=0;RPP=11.6962;RPPR=81.1833;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:21,4:21:848:4:163:-7.53268,0,-69.1056 0/0:3:3,0:3:120:0:0:0,-0.90309,-11.1877 0/0:9:9,0:9:366:0:0:0,-2.70927,-33.3046 0/0:3:3,0:3:122:0:0:0,-0.90309,-11.3725 dDocent_Contig_12513 14 . G A 655.531 . AB=0.206897;ABP=24.6501;AC=0;AF=0;AN=8;AO=6;CIGAR=1X3M20I4M;DP=74;DPB=179;DPRA=1.93333;EPP=16.0391;EPPR=72.4974;GTI=0;LEN=1;MEANALT=3;MQM=40;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=235;QR=1218;RO=32;RPL=0;RPP=16.0391;RPPR=72.4974;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:29:9,6,7,7:9:343:6,7,7:235,251,248:-17.3032,-2.12463,-28.4662,-0.787324,-11.0496,-26.8235,0,-10.2636,-8.92577,-26.0389 0|0:19:5,0,14,0:5:195:0,14,0:0,442,0:-32.8027,-34.3078,-50.3586,0,-16.4177,-12.2033,-34.3078,-50.3586,-16.4177,-50.3586 0|0:11:3,0,8,0:3:104:0,8,0:0,275,0:-20.827,-21.7301,-30.1861,0,-8.79812,-6.38988,-21.7301,-30.1861,-8.79812,-30.1861 0|0:15:15,0,0,0:15:576:0,0,0:0,0,0:0,-4.51545,-52.1788,-4.51545,-52.1788,-52.1788,-4.51545,-52.1788,-52.1788,-52.1788 dDocent_Contig_12515 28 . C T 203.449 . AB=0.180328;ABP=57.1547;AC=1;AF=0.125;AN=8;AO=18;CIGAR=1X;DP=171;DPB=171;DPRA=0;EPP=42.0968;EPPR=335.246;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.633987;PAO=0;PQA=0;PQR=0;PRO=0;QA=723;QR=6109;RO=153;RPL=0;RPP=42.0968;RPPR=335.246;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=153;SRP=335.246;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:38:36,2:36:1438:2:79:0,-3.9419,-122.174 0/1:61:50,11:50:2021:11:445:-22.0429,0,-163.707 0/0:46:43,3:43:1727:3:117:0,-2.9388,-144.742 0/0:26:24,2:24:923:2:82:0,-0.0471021,-75.5807 dDocent_Contig_12516 66 . A T 108.743 . AB=0.333333;ABP=4.45795;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X3M1X;DP=17;DPB=17;DPRA=0;EPP=7.35324;EPPR=20.3821;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=61;QR=232;RO=8;RPL=0;RPP=7.35324;RPPR=20.3821;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=20.3821;SRR=8;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:6:2,2,2,0:2:60:2,2,0:61,62,0:-4.43311,-0.149594,-4.34067,-0.0949326,0,-4.28745,-5.03517,-4.94273,-4.88951,-9.8301 0|0:4:1,0,3,0:1:31:0,3,0:0,94,0:-7.07067,-7.3717,-9.86378,0,-2.79842,-1.89533,-7.3717,-9.86378,-2.79842,-9.86378 .:.:.:.:.:.:.:. 0|0:7:5,0,0,2:5:141:0,0,2:0,0,70:-4.54019,-6.04534,-17.1794,-6.04534,-17.1794,-17.1794,0,-11.4645,-11.4645,-10.8625 dDocent_Contig_12517 27 . A C 36.7657 . AB=0.157895;ABP=22.325;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=91;DPB=91;DPRA=0.791667;EPP=9.52472;EPPR=194.1;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.954545;PAO=0;PQA=0;PQR=0;PRO=0;QA=119;QR=3490;RO=88;RPL=0;RPP=9.52472;RPPR=194.1;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=88;SRP=194.1;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:38:38,0:38:1492:0:0:0,-11.4391,-134.514 0/1:19:16,3:16:638:3:119:-5.37544,0,-52.035 0/0:27:27,0:27:1080:0:0:0,-8.12781,-97.489 0/0:7:7,0:7:280:0:0:0,-2.10721,-25.5718 dDocent_Contig_12518 96 . A G 126.182 . AB=0.315789;ABP=8.61041;AC=4;AF=0.666667;AN=6;AO=7;CIGAR=1X;DP=20;DPB=20;DPRA=0;EPP=18.2106;EPPR=31.2394;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=232;QR=430;RO=13;RPL=7;RPP=18.2106;RPPR=31.2394;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=13;SRP=31.2394;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:7:5,2:5:163:2:66:-4.1611,0,-12.8848 1/1:1:0,1:0:0:1:32:-3.19931,-0.30103,0 0/1:12:8,4:8:267:4:134:-8.77885,0,-20.7443 ./.:.:.:.:.:.:.:. dDocent_Contig_12519 62 . C T 98.3888 . AB=0.307692;ABP=7.18621;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=29;DPB=29;DPRA=2.4375;EPP=11.6962;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=164;QR=1006;RO=25;RPL=4;RPP=11.6962;RPPR=57.2971;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:9,4:9:366:4:164:-11.2365,0,-29.3916 0/0:5:5,0:5:203:0:0:0,-1.50515,-18.6531 0/0:9:9,0:9:356:0:0:0,-2.70927,-32.4 0/0:2:2,0:2:81:0:0:0,-0.60206,-7.68573 dDocent_Contig_12520 13 . A T 852.802 . AB=0.366667;ABP=16.9077;AC=4;AF=0.5;AN=8;AO=33;CIGAR=1X;DP=90;DPB=90;DPRA=0;EPP=74.6689;EPPR=126.784;GTI=0;LEN=1;MEANALT=1;MQM=58.4848;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.818182;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1317;QR=2285;RO=57;RPL=0;RPP=74.6689;RPPR=126.784;RPR=33;RUN=1;SAF=33;SAP=74.6689;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:22,8:22:885:8:316:-19.6557,0,-70.9238 0/1:28:17,11:17:683:11:432:-30.8034,0,-53.3716 0/1:14:6,8:6:236:8:323:-25.1175,0,-17.3969 0/1:18:12,6:12:481:6:246:-17.1016,0,-38.2203 dDocent_Contig_12521 32 . C T 49.0271 . AB=0.2;ABP=14.7363;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=33;DPB=33;DPRA=2.5;EPP=9.52472;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=116;QR=1214;RO=30;RPL=0;RPP=9.52472;RPPR=68.1545;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:12,3:12:482:3:116:-6.30006,0,-39.2114 0/0:12:12,0:12:491:0:0:0,-3.61236,-44.541 0/0:5:5,0:5:200:0:0:0,-1.50515,-18.3793 0/0:1:1,0:1:41:0:0:0,-0.30103,-4.09457 dDocent_Contig_12522 7 . T G 529.601 . AB=0.384615;ABP=4.51363;AC=5;AF=0.625;AN=8;AO=21;CIGAR=1X;DP=39;DPB=39;DPRA=0;EPP=48.6112;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=679;QR=615;RO=18;RPL=0;RPP=48.6112;RPPR=42.0968;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:12:1,11:1:11:11:343:-30.0677,-2.51237,0 1/1:4:0,4:0:0:4:129:-11.9285,-1.20412,0 0/0:10:9,1:9:349:1:30:0,-0.0107335,-28.7713 0/1:13:8,5:8:255:5:177:-12.3608,0,-19.3372 dDocent_Contig_12523 7 . T C 2043.52 . AB=0.561905;ABP=6.50534;AC=5;AF=0.625;AN=8;AO=74;CIGAR=1X5M;DP=120;DPB=120;DPRA=0;EPP=163.699;EPPR=87.6977;GTI=0;LEN=1;MEANALT=2;MQM=54.3243;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.878378;PAIREDR=0.974359;PAO=0;PQA=0;PQR=0;PRO=0;QA=2684;QR=1505;RO=39;RPL=0;RPP=163.699;RPPR=87.6977;RPR=74;RUN=1;SAF=74;SAP=163.699;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:15:0,0,15:0:0:0,15:0,520:-46.3012,-46.3012,-46.3012,-4.51545,-4.51545,0 0|1:29:16,2,11:16:629:2,11:78,413:-29.0021,-27.4046,-78.553,0,-45.3314,-48.4315 0|1:50:19,0,28:19:720:0,28:0,1084:-83.0811,-88.8007,-147.832,0,-59.1266,-50.6978 0|1:26:4,2,20:4:156:2,20:78,667:-51.3661,-46.1526,-58.3845,0,-6.41159,-6.80275 dDocent_Contig_12524 72 . A G 950.451 . AB=0.464286;ABP=3.94093;AC=3;AF=0.375;AN=8;AO=39;CIGAR=1X;DP=92;DPB=92;DPRA=3.5;EPP=87.6977;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.923077;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1386;QR=1887;RO=53;RPL=39;RPP=87.6977;RPPR=118.098;RPR=0;RUN=1;SAF=39;SAP=87.6977;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:33:14,19:14:498:19:684:-51.9478,0,-35.217 0/1:33:19,14:19:675:14:492:-34.6743,0,-51.1348 0/1:18:12,6:12:434:6:210:-13.8208,0,-33.98 0/0:8:8,0:8:280:0:0:0,-2.40824,-25.5374 dDocent_Contig_12526 106 . N A 145.379 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=7;CIGAR=1X9I1X;DP=7;DPB=38.5;DPRA=0;EPP=18.2106;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=21;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=0.142857;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=266;QR=0;RO=0;RPL=0;RPP=18.2106;RPPR=0;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:1:0,1:0:0:1:38:-2.66687,-0.30103,0 1|1:4:0,4:0:0:4:153:-7.70522,-1.20412,0 1|1:1:0,1:0:0:1:36:-2.6486,-0.30103,0 1|1:1:0,1:0:0:1:39:-0.899621,-0.30103,0 dDocent_Contig_12527 14 . A G 248.631 . AB=0.272727;ABP=22.751;AC=5;AF=0.625;AN=8;AO=14;CIGAR=1X;DP=46;DPB=46;DPRA=0;EPP=33.4109;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=57.7857;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=469;QR=1285;RO=32;RPL=0;RPP=33.4109;RPPR=72.4974;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:14,5:14:568:5:170:-9.8887,0,-45.743 0/1:18:15,3:15:609:3:102:-4.09841,0,-49.729 1/1:2:0,2:0:0:2:65:-6.17345,-0.60206,0 0/1:7:3,4:3:108:4:132:-10.0993,0,-7.96447 dDocent_Contig_12528 15 . T C 628.043 . AB=0.6;ABP=5.61607;AC=4;AF=0.666667;AN=6;AO=21;CIGAR=1X;DP=33;DPB=33;DPRA=0;EPP=48.6112;EPPR=29.068;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=825;QR=488;RO=12;RPL=0;RPP=48.6112;RPPR=29.068;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=12;SRP=29.068;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:7,12:7:285:12:460:-36.0193,0,-20.3048 ./.:.:.:.:.:.:.:. 0/1:11:5,6:5:203:6:244:-19.0275,0,-15.3415 1/1:3:0,3:0:0:3:121:-11.2802,-0.90309,0 dDocent_Contig_12530 179 . C A 157.522 . AB=0;ABP=0;AC=2;AF=0.25;AN=8;AO=4;CIGAR=1X;DP=26;DPB=26;DPRA=0.545455;EPP=11.6962;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=164;QR=883;RO=22;RPL=4;RPP=11.6962;RPPR=50.7827;RPR=0;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=50.7827;SRR=22;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:4:0,4:0:0:4:164:-15.1499,-1.20412,0 0/0:8:8,0:8:322:0:0:0,-2.40824,-29.3483 0/0:11:11,0:11:443:0:0:0,-3.31133,-40.2257 0/0:3:3,0:3:118:0:0:0,-0.90309,-11.0016 dDocent_Contig_12531 9 . A G 750.214 . AB=0.413333;ABP=7.90335;AC=4;AF=0.5;AN=8;AO=31;CIGAR=1X;DP=75;DPB=75;DPRA=0;EPP=70.3259;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=0.870968;PAIREDR=0.840909;PAO=0;PQA=0;PQR=0;PRO=0;QA=1151;QR=1676;RO=44;RPL=0;RPP=70.3259;RPPR=98.5551;RPR=31;RUN=1;SAF=31;SAP=70.3259;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:10,6:10:386:6:232:-16.4326,0,-30.2807 0/1:35:27,8:27:1021:8:311:-17.8183,0,-81.6605 0/1:13:4,9:4:154:9:299:-23.3069,0,-10.3201 0/1:11:3,8:3:115:8:309:-24.8616,0,-7.41356 dDocent_Contig_12532 29 . A T 38.7126 . AB=0.133333;ABP=38.0434;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=89;DPB=89;DPRA=3.90476;EPP=16.0391;EPPR=183.243;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=240;QR=3340;RO=83;RPL=0;RPP=16.0391;RPPR=183.243;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=83;SRP=183.243;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:37:36,1:36:1452:1:41:0,-7.04354,-126.833 0/1:30:26,4:26:1054:4:158:-5.56975,0,-86.1185 0/0:15:14,1:14:553:1:41:0,-0.420883,-46.0167 0/0:7:7,0:7:281:0:0:0,-2.10721,-25.662 dDocent_Contig_12533 24 . A C 650.214 . AB=0.111111;ABP=156.702;AC=2;AF=0.25;AN=8;AO=13;CIGAR=1M2I2M1X2M4I3M1X2M3I4M;DP=130;DPB=156.5;DPRA=0;EPP=31.2394;EPPR=33.4109;GTI=0;LEN=1;MEANALT=6.66667;MQM=56.3077;MQMR=60;NS=4;NUMALT=7;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=508;QR=560;RO=14;RPL=0;RPP=31.2394;RPPR=33.4109;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=14;SRP=33.4109;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:48:0,8,5,0,3,0,30,2:0:0:8,5,0,3,0,30,2:186,193,0,120,0,360,80:-31.3379,-19.1589,-16.7507,-15.4876,-3.30208,-13.9824,-31.3379,-19.1589,-15.4876,-31.3379,-21.5171,-9.33439,-5.66301,-21.5171,-20.614,-31.3379,-19.1589,-15.4876,-31.3379,-21.5171,-31.3379,-15.8556,-3.76635,0,-15.8556,-6.03182,-15.8556,-6.8247,-24.8048,-12.6234,-8.95202,-24.8048,-14.9825,-24.8048,-9.32107,-24.2027 0|0:28:2,2,1,2,5,4,10,0:2:80:2,1,2,5,4,10,0:48,40,79,84,160,120,0:-12.2771,-9.70114,-15.7042,-9.58216,-13.0098,-15.8862,-6.40946,-9.83778,-9.71877,-12.4137,-7.88899,-11.3196,-11.1981,-8.02572,-12.9896,0,-3.42975,-3.31082,-0.136695,-1.61664,-5.40503,-7.74473,-11.1809,-11.0529,-7.88168,-9.39993,-1.47443,-11.3383,-12.8792,-16.3063,-16.1873,-13.0158,-14.4948,-6.60915,-14.3486,-19.4832 0|1:41:7,10,7,0,8,0,4,3:7:280:10,7,0,8,0,4,3:226,275,0,244,0,48,122:-20.5143,-7.763,-27.8436,0,-8.2431,-20.9938,-22.6215,-30.8539,-23.101,-45.7107,-3.9271,-12.1761,-4.40703,-27.024,-24.6158,-22.6215,-30.8539,-23.101,-45.7107,-27.024,-45.7107,-20.5619,-28.8044,-21.0416,-43.6493,-24.9682,-43.6493,-42.4452,-12.661,-20.8974,-13.1406,-35.7545,-17.0652,-35.7545,-33.6939,-34.8514 0|0:13:5,2,0,3,0,0,2,0:5:200:2,0,3,0,0,2,0:48,0,118,0,0,24,0:-8.21171,-6.55558,-22.4851,-9.71686,-23.0872,-26.2461,0,-13.4272,-16.5849,-15.6818,-9.71686,-23.0872,-26.2461,-16.5849,-26.2461,-9.71686,-23.0872,-26.2461,-16.5849,-26.2461,-26.2461,-8.73164,-22.0995,-25.2453,-15.5934,-25.2453,-25.2453,-24.6432,-9.71686,-23.0872,-26.2461,-16.5849,-26.2461,-26.2461,-25.2453,-26.2461 dDocent_Contig_12534 107 . N T 367.898 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=12;CIGAR=1X;DP=12;DPB=12;DPRA=0;EPP=29.068;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=387;QR=0;RO=0;RPL=0;RPP=29.068;RPPR=0;RPR=12;RUN=1;SAF=0;SAP=29.068;SAR=12;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:57:-5.41388,-0.60206,0 1/1:3:0,3:0:0:3:104:-9.70309,-0.90309,0 1/1:3:0,3:0:0:3:89:-8.30517,-0.90309,0 1/1:4:0,4:0:0:4:137:-12.6682,-1.20412,0 dDocent_Contig_12537 19 . A G 249.452 . AB=0.5;ABP=3.0103;AC=4;AF=0.5;AN=8;AO=9;CIGAR=1X;DP=26;DPB=26;DPRA=0.62963;EPP=22.5536;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.111111;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=348;QR=657;RO=17;RPL=0;RPP=22.5536;RPPR=39.9253;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1:0,1:0:0:1:25:-2.49986,-0.30103,0 0/0:9:9,0:9:339:0:0:0,-2.70927,-30.8533 0/1:8:1,7:1:40:7:282:-23.3444,0,-1.58744 0/1:8:7,1:7:278:1:41:-1.68633,0,-22.981 dDocent_Contig_12538 54 . C G 472.917 . AB=0.33871;ABP=17.0198;AC=3;AF=0.375;AN=8;AO=22;CIGAR=1X;DP=101;DPB=101;DPRA=0;EPP=50.7827;EPPR=174.557;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.590909;PAIREDR=0.670886;PAO=0;PQA=0;PQR=0;PRO=0;QA=821;QR=3056;RO=79;RPL=17;RPP=17.2236;RPPR=174.557;RPR=5;RUN=1;SAF=17;SAP=17.2236;SAR=5;SRF=79;SRP=174.557;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:11,7:11:406:7:259:-18.2434,0,-31.4623 0/0:39:38,1:38:1472:1:40:0,-7.74449,-128.739 0/1:20:10,10:10:393:10:371:-27.715,0,-29.7037 0/1:24:20,4:20:785:4:151:-6.73122,0,-63.751 dDocent_Contig_12539 19 . T A 267.654 . AB=0.454545;ABP=3.40511;AC=2;AF=0.25;AN=8;AO=11;CIGAR=1X;DP=62;DPB=62;DPRA=0.493333;EPP=26.8965;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=440;QR=2039;RO=51;RPL=0;RPP=26.8965;RPPR=113.755;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:11,6:11:436:6:240:-16.8576,0,-34.476 0/0:25:25,0:25:1004:0:0:0,-7.52575,-90.6541 0/0:15:14,1:14:558:1:40:0,-0.519771,-46.5652 0/1:5:1,4:1:41:4:160:-13.2783,0,-2.58942 dDocent_Contig_12540 11 . T C 1595.07 . AB=0.416667;ABP=11.6962;AC=4;AF=0.5;AN=8;AO=60;CIGAR=1X1M1X1M1X;DP=144;DPB=144;DPRA=0;EPP=133.299;EPPR=183.243;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2322;QR=3291;RO=83;RPL=0;RPP=133.299;RPPR=183.243;RPR=60;RUN=1;SAF=60;SAP=133.299;SAR=0;SRF=83;SRP=183.243;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:79:41,37:41:1613:37:1443:-106.293,0,-121.573 0|1:49:34,15:34:1364:15:584:-38.1488,0,-108.271 0|1:11:5,6:5:194:6:216:-16.4713,0,-14.5181 0|1:5:3,2:3:120:2:79:-5.99248,0,-9.68254 dDocent_Contig_12541 10 . A T 93.4684 . AB=0.126984;ABP=79.1497;AC=1;AF=0.125;AN=8;AO=11;CIGAR=1X;DP=137;DPB=137;DPRA=2.92857;EPP=26.8965;EPPR=276.616;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=441;QR=5016;RO=126;RPL=0;RPP=26.8965;RPPR=276.616;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=126;SRP=276.616;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:63:55,8:55:2166:8:326:-10.7448,0,-176.154 0/0:40:38,2:38:1529:2:81:0,-4.35547,-130.165 0/0:20:19,1:19:763:1:34:0,-2.62169,-65.5915 0/0:14:14,0:14:558:0:0:0,-4.21442,-50.5624 dDocent_Contig_12542 15 . C T 263.303 . AB=0.266667;ABP=24.2907;AC=3;AF=0.375;AN=8;AO=12;CIGAR=2X;DP=64;DPB=64;DPRA=0.789474;EPP=29.068;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.807692;PAO=0;PQA=0;PQR=0;PRO=0;QA=486;QR=2090;RO=52;RPL=0;RPP=29.068;RPPR=115.927;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:19:19,0:19:769:0:0:0,-5.71957,-69.5299 0|1:14:12,2:12:484:2:82:-3.56526,0,-39.6961 0|1:23:14,9:14:556:9:363:-26.1106,0,-43.4571 0|1:8:7,1:7:281:1:41:-1.68633,0,-23.2534 dDocent_Contig_12543 34 . T A 81.0675 . AB=0.133333;ABP=73.0765;AC=2;AF=0.25;AN=8;AO=9;CIGAR=1X;DP=82;DPB=82;DPRA=6.5;EPP=22.5536;EPPR=161.528;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=360;QR=2944;RO=73;RPL=0;RPP=22.5536;RPPR=161.528;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=73;SRP=161.528;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:24,4:24:964:4:159:-6.26199,0,-78.6293 0/1:32:28,4:28:1125:4:161:-5.24252,0,-91.8995 0/0:18:17,1:17:692:1:40:0,-1.42286,-58.6125 0/0:4:4,0:4:163:0:0:0,-1.20412,-15.0584 dDocent_Contig_12544 209 . N G 150.587 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=7.37776;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=163;QR=0;RO=0;RPL=4;RPP=11.6962;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:4:0,4:0:0:4:163:-15.0584,-1.20412,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_12545 132 . G T 373.708 . AB=0.619048;ABP=5.59539;AC=2;AF=0.25;AN=8;AO=13;CIGAR=1X;DP=31;DPB=31;DPRA=2.1;EPP=31.2394;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.944444;PAO=0;PQA=0;PQR=0;PRO=0;QA=515;QR=726;RO=18;RPL=0;RPP=31.2394;RPPR=42.0968;RPR=13;RUN=1;SAF=0;SAP=31.2394;SAR=13;SRF=0;SRP=42.0968;SRR=18;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:6:6,0:6:241:0:0:0,-1.80618,-22.0667 0/0:4:4,0:4:163:0:0:0,-1.20412,-15.0584 0/1:10:3,7:3:119:7:270:-21.6505,0,-8.0842 0/1:11:5,6:5:203:6:245:-19.1181,0,-15.3417 dDocent_Contig_12546 18 . T C 34.5384 . AB=0.222222;ABP=9.04217;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X2M1X;DP=20;DPB=20;DPRA=1.63636;EPP=7.35324;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=705;RO=18;RPL=0;RPP=7.35324;RPPR=42.0968;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:9:7,2:7:285:2:81:-4.97646,0,-23.3151 0|0:7:7,0:7:257:0:0:0,-2.10721,-23.4733 0|0:4:4,0:4:163:0:0:0,-1.20412,-15.0584 .:.:.:.:.:.:.:. dDocent_Contig_12547 94 . C G 101.143 . AB=0.384615;ABP=4.51363;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=52;DPB=52;DPRA=1.36364;EPP=16.0391;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=0.5;PAIREDR=0.804348;PAO=0;PQA=0;PQR=0;PRO=0;QA=206;QR=1587;RO=46;RPL=6;RPP=16.0391;RPPR=102.898;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:17:16,1:16:543:1:35:0,-1.61888,-45.6942 0/0:3:3,0:3:105:0:0:0,-0.90309,-9.79616 0/1:13:8,5:8:280:5:171:-11.8131,0,-21.6266 0/0:19:19,0:19:659:0:0:0,-5.71957,-59.6348 dDocent_Contig_12548 29 . T C 38.7961 . AB=0.285714;ABP=5.80219;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X;DP=65;DPB=65;DPRA=0.362069;EPP=7.35324;EPPR=139.813;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.730159;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=2527;RO=63;RPL=0;RPP=7.35324;RPPR=139.813;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=63;SRP=139.813;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:16:16,0:16:644:0:0:0,-4.81648,-58.2925 0/0:29:29,0:29:1174:0:0:0,-8.72987,-105.937 0/0:13:13,0:13:509:0:0:0,-3.91339,-46.1548 0/1:7:5,2:5:200:2:81:-5.57852,0,-16.2718 dDocent_Contig_12549 19 . A T 190.522 . AB=0.257143;ABP=20.9405;AC=2;AF=0.25;AN=8;AO=9;CIGAR=1X;DP=60;DPB=60;DPRA=1.4;EPP=22.5536;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=50.1765;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.54902;PAO=0;PQA=0;PQR=0;PRO=0;QA=358;QR=2043;RO=51;RPL=0;RPP=22.5536;RPPR=113.755;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:21,7:21:851:7:276:-16.7777,0,-64.1468 0/0:17:17,0:17:686:0:0:0,-5.11751,-60.516 0/0:8:8,0:8:315:0:0:0,-2.40824,-27.4993 0/1:7:5,2:5:191:2:82:-5.67247,0,-13.709 dDocent_Contig_12550 8 . C T 176.231 . AB=0.21875;ABP=24.9965;AC=3;AF=0.375;AN=8;AO=10;CIGAR=1X;DP=63;DPB=63;DPRA=20.6667;EPP=24.725;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=388;QR=2014;RO=53;RPL=0;RPP=24.725;RPPR=118.098;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:32:25,7:25:962:7:271:-15.1234,0,-77.261 0/0:29:27,2:27:1013:2:78:0,-1.3264,-84.0752 1/1:1:0,1:0:0:1:39:-3.89656,-0.30103,0 0/0:1:1,0:1:39:0:0:0,-0.30103,-3.89656 dDocent_Contig_12551 21 . G A 1127.09 . AB=0.123596;ABP=112.535;AC=1;AF=0.125;AN=8;AO=11;CIGAR=2M1X3M;DP=108;DPB=85.1667;DPRA=0;EPP=26.8965;EPPR=111.584;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=1.38778e-17;PAIRED=0.727273;PAIREDR=0.56;PAO=0;PQA=0;PQR=0;PRO=0;QA=443;QR=1967;RO=50;RPL=0;RPP=26.8965;RPPR=111.584;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:40:18,21,0,1:18:715:21,0,1:804,0,41:-60.5182,0,-52.5303,-65.9367,-58.852,-124.807,-62.5514,-55.4672,-121.422,-121.121 0|0:33:17,10,2,4:17:661:10,2,4:358,72,156:-24.0511,0,-51.3093,-23.297,-48.4496,-77.0199,-16.3387,-41.4968,-64.7982,-69.4655 0|0:19:10,7,2,0:10:395:7,2,0:243,76,0:-16.7017,0,-30.4098,-13.4716,-26.2865,-45.4023,-19.712,-32.517,-46.0044,-52.2379 0|1:16:5,5,0,6:5:196:5,0,6:172,0,246:-18.8352,-6.40883,-21.0135,-20.3403,-22.5187,-36.4621,0,-2.20444,-16.1419,-14.3357 dDocent_Contig_12552 45 . G A 133.918 . AB=0.3125;ABP=7.89611;AC=4;AF=0.5;AN=8;AO=6;CIGAR=1X;DP=25;DPB=25;DPRA=0.708333;EPP=16.0391;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=226;QR=724;RO=19;RPL=0;RPP=16.0391;RPPR=44.2683;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1:0,1:0:0:1:37:-3.69783,-0.30103,0 0/1:11:7,4:7:267:4:155:-11.0138,0,-21.0808 0/1:5:4,1:4:155:1:34:-1.89376,0,-12.82 0/0:8:8,0:8:302:0:0:0,-2.40824,-27.5373 dDocent_Contig_12553 27 . C G 36.7257 . AB=0.25;ABP=7.35324;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X2M1X;DP=62;DPB=62;DPRA=0.823529;EPP=9.52472;EPPR=131.127;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.864407;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=2309;RO=59;RPL=0;RPP=9.52472;RPPR=131.127;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=59;SRP=131.127;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:14:14,0:14:554:0:0:0,-4.21442,-50.2042 0|0:20:20,0:20:794:0:0:0,-6.0206,-71.7805 0|0:20:19,1:19:726:1:40:0,-2.02492,-61.6638 0|1:8:6,2:6:235:2:82:-5.37144,0,-19.1126 dDocent_Contig_12554 12 . G A 785.883 . AB=0.634146;ABP=9.41879;AC=1;AF=0.125;AN=8;AO=26;CIGAR=1X;DP=65;DPB=65;DPRA=5.125;EPP=59.4686;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.641;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.948718;PAO=0;PQA=0;PQR=0;PRO=0;QA=1026;QR=1563;RO=39;RPL=0;RPP=59.4686;RPPR=87.6977;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:3:3,0:3:119:0:0:0,-0.90309,-11.0954 0/1:41:15,26:15:600:26:1026:-80.2869,0,-41.9962 0/0:19:19,0:19:762:0:0:0,-5.71957,-68.8766 0/0:2:2,0:2:82:0:0:0,-0.60206,-7.77968 dDocent_Contig_12555 9 . A G 638.228 . AB=0.122137;ABP=165.473;AC=1;AF=0.125;AN=8;AO=16;CIGAR=1X5M;DP=163;DPB=163;DPRA=1.36458;EPP=37.7539;EPPR=248.387;GTI=0;LEN=1;MEANALT=3.33333;MQM=60;MQMR=60;NS=4;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=623;QR=4386;RO=113;RPL=0;RPP=37.7539;RPPR=248.387;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=113;SRP=248.387;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:40:29,2,0,2,6:29:1111:2,0,2,6:76,0,78,210:-8.17556,-10.683,-101.273,-16.9054,-101.875,-108.094,-10.4885,-95.4622,-101.682,-101.08,0,-84.9519,-91.1712,-84.759,-89.365 0|0:51:30,0,4,2,14:30:1173:0,4,2,14:0,143,77,497:-29.784,-38.8149,-135.289,-30.1968,-126.664,-125.46,-32.4872,-128.966,-120.341,-128.364,0,-96.497,-87.877,-90.1742,-92.2826 0|1:40:24,0,0,12,4:24:938:0,0,12,4:0,0,468,148:-31.2612,-38.4859,-115.607,-38.4859,-115.607,-115.607,0,-77.136,-77.136,-73.5236,-26.4071,-103.525,-103.525,-65.055,-102.321 0|0:32:30,0,0,0,2:30:1164:0,0,0,2:0,0,0,76:0,-9.0309,-104.674,-9.0309,-104.674,-104.674,-9.0309,-104.674,-104.674,-104.674,-2.44336,-98.4656,-98.4656,-98.4656,-97.8636 dDocent_Contig_12556 12 . 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C T 307.344 . AB=0.137255;ABP=236.167;AC=4;AF=0.5;AN=8;AO=28;CIGAR=1X1M;DP=204;DPB=204;DPRA=0;EPP=63.8115;EPPR=378.675;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.988439;PAO=0;PQA=0;PQR=0;PRO=0;QA=1077;QR=6587;RO=173;RPL=0;RPP=63.8115;RPPR=378.675;RPR=28;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=173;SRP=378.675;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:44:39,0,4:39:1487:0,4:0,155:-0.999934,-12.7401,-134.723,0,-121.988,-120.784 0|1:76:65,0,11:65:2495:0,11:0,423:-15.5449,-35.1119,-239.912,0,-205.185,-201.873 0|1:54:45,0,9:45:1719:0,9:0,343:-14.9713,-28.5176,-169.561,0,-141.424,-138.715 0|1:30:24,2,4:24:886:2,4:76,156:-5.60542,-6.60055,-78.4339,0,-66.2094,-71.2391 dDocent_Contig_12569 15 . C T 668.29 . AB=0.40678;ABP=7.46366;AC=2;AF=0.25;AN=8;AO=24;CIGAR=8M1X1M;DP=66;DPB=54.8;DPRA=2.80952;EPP=55.1256;EPPR=63.8115;GTI=0;LEN=1;MEANALT=2;MQM=51.2083;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.625;PAIREDR=0.571429;PAO=0;PQA=0;PQR=0;PRO=0;QA=922;QR=1085;RO=28;RPL=0;RPP=55.1256;RPPR=63.8115;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:18:3,2,13:3:115:2,13:74,501:-39.4215,-34.2716,-43.1091,0,-3.39782,-5.53317 0|0:7:7,0,0:7:268:0,0:0,0:0,-2.10721,-24.4789,-2.10721,-24.4789,-24.4789 0|0:26:10,9,7:10:390:9,7:318,267:-22.839,0,-29.3637,-5.01865,-11.2579,-34.9888 0|1:15:8,3,4:8:312:3,4:111,154:-9.96636,-3.29668,-28.0477,0,-16.5845,-24.456 dDocent_Contig_12572 11 . A G 1175.95 . AB=0.466667;ABP=3.73412;AC=5;AF=0.625;AN=8;AO=37;CIGAR=1X2M1X1M;DP=77;DPB=77;DPRA=0;EPP=83.3548;EPPR=48.6112;GTI=0;LEN=1;MEANALT=2.25;MQM=48.8649;MQMR=60;NS=4;NUMALT=5;ODDS=0;PAIRED=0.972973;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1421;QR=825;RO=21;RPL=0;RPP=83.3548;RPPR=48.6112;RPR=37;RUN=1;SAF=37;SAP=83.3548;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:23:14,0,9,0,0,0:14:548:0,9,0,0,0:0,338,0,0,0:-22.9158,-27.1302,-72.2051,0,-45.4494,-42.7402,-27.1302,-72.2051,-45.4494,-72.2051,-27.1302,-72.2051,-45.4494,-72.2051,-72.2051,-27.1302,-72.2051,-45.4494,-72.2051,-72.2051,-72.2051 0|0:29:6,3,6,2,9,3:6:238:3,6,2,9,3:109,231,77,349,117:-26.8712,-19.7795,-38.4711,-9.9957,-20.694,-27.785,-22.3548,-33.052,-23.269,-41.348,0,-10.7003,-0.916614,-13.2748,-16.888,-19.0586,-29.7563,-19.9731,-32.3318,-9.97868,-37.7511 1|1:23:1,2,20,0,0,0:1:39:2,20,0,0,0:79,774,0,0,0:-64.6022,-58.4005,-61.005,-3.30004,0,-0.483663,-64.9032,-61.607,-6.50426,-68.1096,-64.9032,-61.607,-6.50426,-68.1096,-68.1096,-64.9032,-61.607,-6.50426,-68.1096,-68.1096,-68.1096 1|1:2:0,0,2,0,0,0:0:0:0,2,0,0,0:0,78,0,0,0:-7.06995,-7.06995,-7.06995,-0.60206,-0.60206,0,-7.06995,-7.06995,-0.60206,-7.06995,-7.06995,-7.06995,-0.60206,-7.06995,-7.06995,-7.06995,-7.06995,-0.60206,-7.06995,-7.06995,-7.06995 dDocent_Contig_12573 86 . G A 75.0136 . AB=0.25;ABP=5.18177;AC=3;AF=0.375;AN=8;AO=3;CIGAR=1X;DP=41;DPB=41;DPRA=0.171429;EPP=9.52472;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=104;QR=1217;RO=38;RPL=3;RPP=9.52472;RPPR=85.5263;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:24:24,0:24:758:0:0:0,-7.22472,-68.5175 0/1:4:3,1:3:100:1:35:-2.29451,0,-8.12654 0/0:11:11,0:11:359:0:0:0,-3.31133,-32.6263 1/1:2:0,2:0:0:2:69:-6.55266,-0.60206,0 dDocent_Contig_12574 79 . A G 121.712 . AB=0.241379;ABP=19.8579;AC=3;AF=0.375;AN=8;AO=7;CIGAR=1X;DP=30;DPB=30;DPRA=9.66667;EPP=18.2106;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=279;QR=912;RO=23;RPL=7;RPP=18.2106;RPPR=52.9542;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:8,4:8:321:4:162:-11.3546,0,-25.6455 0/1:13:11,2:11:438:2:82:-3.86629,0,-35.8552 0/1:4:3,1:3:119:1:35:-2.29451,0,-9.89089 0/0:1:1,0:1:34:0:0:0,-0.30103,-3.39891 dDocent_Contig_12575 31 . T C 335.472 . AB=0.3125;ABP=12.7819;AC=3;AF=0.375;AN=8;AO=12;CIGAR=1X;DP=47;DPB=47;DPRA=2.61538;EPP=29.068;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.971429;PAO=0;PQA=0;PQR=0;PRO=0;QA=487;QR=1363;RO=35;RPL=0;RPP=29.068;RPPR=79.0118;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:32:22,10:22:838:10:408:-27.4476,0,-66.0941 0/0:7:7,0:7:283:0:0:0,-2.10721,-25.8425 1/1:2:0,2:0:0:2:79:-7.49724,-0.60206,0 0/0:6:6,0:6:242:0:0:0,-1.80618,-22.1569 dDocent_Contig_12576 15 . T C 161.246 . AB=0.304348;ABP=10.6577;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=48;DPB=48;DPRA=2.76;EPP=18.2106;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.857143;PAIREDR=0.634146;PAO=0;PQA=0;PQR=0;PRO=0;QA=271;QR=1652;RO=41;RPL=0;RPP=18.2106;RPPR=92.0407;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5,0:5:203:0:0:0,-1.50515,-18.6531 0/1:23:16,7:16:643:7:271:-17.8235,0,-51.2812 0/0:5:5,0:5:202:0:0:0,-1.50515,-18.5615 0/0:15:15,0:15:604:0:0:0,-4.51545,-54.6982 dDocent_Contig_12577 93 . C T 36.6835 . AB=0.272727;ABP=7.94546;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=45;DPB=45;DPRA=1.36842;EPP=11.6962;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.25;PAIREDR=0.731707;PAO=0;PQA=0;PQR=0;PRO=0;QA=128;QR=1409;RO=41;RPL=4;RPP=11.6962;RPPR=92.0407;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:15:14,1:14:482:1:35:0,-1.01682,-40.2101 0/0:15:15,0:15:510:0:0:0,-4.51545,-46.2235 0/1:11:8,3:8:278:3:93:-5.36705,0,-22.0467 0/0:4:4,0:4:139:0:0:0,-1.20412,-12.8527 dDocent_Contig_12578 19 . A G 376.666 . AB=0.027027;ABP=506.264;AC=0;AF=0;AN=8;AO=10;CIGAR=1X2M1X3M;DP=426;DPB=441.143;DPRA=0.880342;EPP=24.725;EPPR=745.654;GTI=0;LEN=1;MEANALT=4.33333;MQM=60;MQMR=59.4591;NS=4;NUMALT=2;ODDS=0;PAIRED=0.4;PAIREDR=0.634503;PAO=0;PQA=0;PQR=0;PRO=0;QA=391;QR=13493;RO=342;RPL=0;RPP=24.725;RPPR=745.654;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=342;SRP=745.654;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:163:125,5,19:125:4915:5,19:195,736:-22.4147,-44.0125,-446.232,0,-387.701,-398.011 0|0:96:78,2,14:78:3083:2,14:78,519:-18.6489,-35.7158,-288.215,0,-246.667,-248.864 0|0:117:96,0,8:96:3801:0,8:0,298:0,-28.8989,-341.319,-4.60563,-317.016,-314.608 0|0:50:43,3,4:43:1694:3,4:118,158:0,-3.23665,-141.696,-0.0702616,-129.725,-138.227 dDocent_Contig_12579 12 . C T 538.39 . AB=0.22807;ABP=39.6206;AC=0;AF=0;AN=8;AO=13;CIGAR=1X3M1X;DP=74;DPB=74;DPRA=0;EPP=31.2394;EPPR=83.3548;GTI=0;LEN=1;MEANALT=2.66667;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=508;QR=1431;RO=37;RPL=0;RPP=31.2394;RPPR=83.3548;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:17:13,0,0,4:13:502:0,0,4:0,0,163:-9.94092,-13.8543,-55.0666,-13.8543,-55.0666,-55.0666,0,-41.6143,-41.6143,-40.4101 0|0:15:7,3,2,3:7:267:3,2,3:114,82,122:-7.9615,-0.730981,-21.7156,-3.29641,-15.8471,-24.5911,0,-12.5508,-15.124,-20.9939 0|0:37:17,9,0,11:17:662:9,0,11:356,0,432:-30.4068,-6.22411,-57.921,-35.5243,-60.6302,-89.9303,0,-25.1031,-54.4041,-51.0928 0|0:5:0,1,3,1:0:0:1,3,1:38,115,41:-12.8299,-9.71535,-9.41432,-3.39895,-0.297298,-2.49586,-9.44035,-6.32466,0,-9.13932 dDocent_Contig_12580 7 . T C 1331.67 . AB=0.505376;ABP=3.03365;AC=4;AF=0.5;AN=8;AO=47;CIGAR=1X1M;DP=93;DPB=93;DPRA=0;EPP=105.07;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1.75;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1810;QR=1495;RO=39;RPL=0;RPP=105.07;RPPR=87.6977;RPR=47;RUN=1;SAF=47;SAP=105.07;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:28:7,0,21:7:266:0,21:0,802:-64.0754,-66.1826,-87.9957,0,-22.1933,-15.8717 0|1:30:12,2,16:12:464:2,16:76,620:-47.3307,-44.7109,-82.2214,0,-31.8865,-33.3021 0|1:11:6,3,2:6:233:3,2:116,76:-7.72606,0,-18.249,-3.302,-12.9213,-21.8469 0|1:24:14,2,8:14:532:2,8:78,312:-21.4326,-19.2353,-62.255,0,-37.2065,-41.2112 dDocent_Contig_12581 18 . T A 351.521 . AB=0.0628571;ABP=293.479;AC=0;AF=0;AN=8;AO=11;CIGAR=1X3M1X;DP=191;DPB=191;DPRA=3.64583;EPP=26.8965;EPPR=337.417;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.636364;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=430;QR=6104;RO=154;RPL=0;RPP=26.8965;RPPR=337.417;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=154;SRP=337.417;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:47:39,2,6:39:1562:2,6:76,239:-7.95187,-13.4648,-141.546,0,-122.47,-126.895 0|0:80:63,5,12:63:2469:5,12:196,476:-20.2178,-23.0665,-224.572,0,-186.897,-199.402 0|0:48:37,4,7:37:1473:4,7:158,285:-12.3801,-10.5213,-130.598,0,-108.29,-119.184 0|0:16:15,0,1:15:600:0,1:0,41:0,-4.51545,-53.9311,-0.721913,-50.5464,-50.2454 dDocent_Contig_12582 31 . C T 673.228 . AB=0.510638;ABP=3.0565;AC=4;AF=0.5;AN=8;AO=24;CIGAR=1X;DP=47;DPB=47;DPRA=0;EPP=55.1256;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.916667;PAIREDR=0.913043;PAO=0;PQA=0;PQR=0;PRO=0;QA=970;QR=931;RO=23;RPL=0;RPP=55.1256;RPPR=52.9542;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:6:5,1:5:198:1:40:-2.1895,0,-16.3907 0/1:12:7,5:7:285:5:204:-15.1317,0,-22.412 0/1:11:2,9:2:82:9:368:-30.174,0,-4.46835 0/1:18:9,9:9:366:9:358:-27.1602,0,-27.886 dDocent_Contig_12583 79 . G A 118.905 . AB=0.461538;ABP=3.17734;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=67;DPB=67;DPRA=0.763158;EPP=18.2106;EPPR=133.299;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.857143;PAIREDR=0.816667;PAO=0;PQA=0;PQR=0;PRO=0;QA=226;QR=2078;RO=60;RPL=4;RPP=3.32051;RPPR=5.32654;RPR=3;RUN=1;SAF=4;SAP=3.32051;SAR=3;SRF=34;SRP=5.32654;SRR=26;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:23:23,0:23:815:0:0:0,-6.92369,-73.6726 0/1:13:7,6:7:246:6:191:-13.5894,0,-18.5685 0/0:15:15,0:15:494:0:0:0,-4.51545,-44.7707 0/0:16:15,1:15:523:1:35:0,-1.31785,-43.9009 dDocent_Contig_12584 17 . C T 108.294 . AB=0;ABP=0;AC=2;AF=0.333333;AN=6;AO=3;CIGAR=1X;DP=24;DPB=24;DPRA=0.285714;EPP=9.52472;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.95;PAO=0;PQA=0;PQR=0;PRO=0;QA=111;QR=801;RO=20;RPL=0;RPP=9.52472;RPPR=46.4397;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:111:-10.3521,-0.90309,0 ./.:.:.:.:.:.:.:. 0/0:12:12,0:12:478:0:0:0,-3.61236,-43.3721 0/0:9:8,0:8:323:0:0:0,-2.40824,-29.0384 dDocent_Contig_12585 51 . G C 155.155 . AB=0.428571;ABP=3.63072;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=93;DPB=93;DPRA=0.814815;EPP=20.3821;EPPR=187.585;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.8;PAO=0;PQA=0;PQR=0;PRO=0;QA=316;QR=3410;RO=85;RPL=8;RPP=20.3821;RPPR=187.585;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=85;SRP=187.585;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:27:27,0:27:1097:0:0:0,-8.12781,-99.0136 0/0:34:33,1:33:1323:1:41:0,-6.14045,-115.24 0/0:18:17,1:17:675:1:41:0,-1.32397,-56.9848 0/1:14:8,6:8:315:6:234:-17.2145,0,-24.4975 dDocent_Contig_12586 21 . T G 109.987 . AB=0.25;ABP=16.0391;AC=2;AF=0.25;AN=8;AO=7;CIGAR=1X3M3D7M;DP=53;DPB=51.5;DPRA=1.02564;EPP=18.2106;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=56.7143;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.714286;PAIREDR=0.891304;PAO=0;PQA=0;PQR=0;PRO=0;QA=265;QR=1790;RO=46;RPL=0;RPP=18.2106;RPPR=102.898;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:18:15,3:15:576:3:112:-5.01475,0,-46.7599 0|0:13:13,0:13:511:0:0:0,-3.91339,-46.3385 0|0:16:15,1:15:595:1:33:0,-1.54966,-50.6244 0|1:6:3,3:3:108:3:120:-9.38172,0,-8.26632 dDocent_Contig_12587 18 . G C 258 . AB=0.4;ABP=3.87889;AC=2;AF=0.25;AN=8;AO=4;CIGAR=1X3M1X;DP=30;DPB=30;DPRA=0;EPP=11.6962;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.75;PAIREDR=0.941176;PAO=0;PQA=0;PQR=0;PRO=0;QA=162;QR=680;RO=17;RPL=0;RPP=11.6962;RPPR=39.9253;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:11:7,0,4:7:277:0,4:0,161:-11.5636,-13.6708,-36.4638,0,-23.1926,-21.9885 1|0:6:2,2,2:2:80:2,2:81,82:-6.26252,-0.187887,-6.17105,-0.0939436,0,-6.07957 0|1:4:2,2,0:2:81:2,0:81,0:-6.48161,0,-6.48161,-7.08367,-7.08367,-13.7628 0|0:9:6,0,3:6:242:0,3:0,123:-8.75552,-10.5617,-30.5056,0,-20.3511,-19.4481 dDocent_Contig_12588 25 . T C 267.068 . AB=0.244898;ABP=30.7077;AC=2;AF=0.25;AN=8;AO=13;CIGAR=1X1M;DP=112;DPB=112;DPRA=0.703704;EPP=31.2394;EPPR=211.472;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.958333;PAO=0;PQA=0;PQR=0;PRO=0;QA=526;QR=3852;RO=96;RPL=0;RPP=31.2394;RPPR=211.472;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=96;SRP=211.472;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:27:26,0,1:26:1052:0,1:0,41:0,-7.82678,-94.5606,-4.03324,-91.1763,-90.8753 0|1:34:24,0,10:24:943:0,10:0,405:-26.5745,-33.7992,-111.341,0,-77.9423,-74.932 0|0:36:35,0,0:35:1413:0,0:0,0:0,-10.536,-127.021,-10.536,-127.021,-127.021 0|1:15:11,2,2:11:444:2,2:82,80:-3.46178,0,-36.0005,-0.188103,-30.0132,-36.1802 dDocent_Contig_12590 108 . A T 197.528 . AB=0.428571;ABP=3.63072;AC=4;AF=0.5;AN=8;AO=9;CIGAR=1X;DP=26;DPB=26;DPRA=0.62963;EPP=22.5536;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=40;MQMR=40;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=302;QR=588;RO=17;RPL=0;RPP=22.5536;RPPR=39.9253;RPR=9;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=39.9253;SRR=17;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:9:9,0:9:315:0:0:0,-2.70927,-27.7218 0/1:6:2,4:2:63:4:128:-9.7482,0,-4.04028 0/1:8:6,2:6:210:2:70:-4.0111,0,-16.1856 1/1:3:0,3:0:0:3:104:-9.38925,-0.90309,0 dDocent_Contig_12591 110 . G A 156.677 . AB=0.47541;ABP=3.33068;AC=3;AF=0.375;AN=8;AO=30;CIGAR=1X;DP=72;DPB=72;DPRA=0;EPP=68.1545;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=15;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.904762;PAO=0;PQA=0;PQR=0;PRO=0;QA=1009;QR=1442;RO=42;RPL=0;RPP=68.1545;RPPR=94.2121;RPR=30;RUN=1;SAF=0;SAP=68.1545;SAR=30;SRF=0;SRP=94.2121;SRR=42;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:10,1:10:326:1:35:0,-1.81552,-28.1599 0/1:22:11,11:11:380:11:367:-8.30799,0,-27.9102 0/1:22:11,11:11:384:11:368:-8.3082,0,-28.2725 0/1:17:10,7:10:352:7:239:-4.44904,0,-26.9014 dDocent_Contig_12592 107 . N A 118.375 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=7.37776;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=128;QR=0;RO=0;RPL=0;RPP=11.6962;RPPR=0;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:4:0,4:0:0:4:128:-11.8372,-1.20412,0 ./.:.:.:.:.:.:.:. dDocent_Contig_12594 9 . T C 34.088 . AB=0.285714;ABP=5.80219;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X;DP=56;DPB=56;DPRA=0.428571;EPP=7.35324;EPPR=120.27;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=76;QR=2057;RO=54;RPL=0;RPP=7.35324;RPPR=120.27;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:15:15,0:15:583:0:0:0,-4.51545,-52.8132 0/0:22:22,0:22:848:0:0:0,-6.62266,-76.6418 0/0:12:12,0:12:433:0:0:0,-3.61236,-39.3039 0/1:7:5,2:5:193:2:76:-5.1076,0,-15.6341 dDocent_Contig_12596 59 . A G 32.18 . AB=0.176471;ABP=18.4661;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1X;DP=34;DPB=34;DPRA=0;EPP=11.6962;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=154;QR=1137;RO=30;RPL=4;RPP=11.6962;RPPR=68.1545;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:17:16,1:16:574:1:32:0,-1.9182,-48.7653 0/1:9:7,2:7:278:2:81:-4.97646,0,-22.6793 0/1:8:7,1:7:285:1:41:-1.68633,0,-23.6162 ./.:.:.:.:.:.:.:. dDocent_Contig_12597 8 . A G 1617.46 . AB=0.431655;ABP=8.64988;AC=4;AF=0.5;AN=8;AO=60;CIGAR=1X;DP=139;DPB=139;DPRA=0;EPP=133.299;EPPR=174.557;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.7848;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2326;QR=3013;RO=79;RPL=0;RPP=133.299;RPPR=174.557;RPR=60;RUN=1;SAF=60;SAP=133.299;SAR=0;SRF=79;SRP=174.557;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:4,26:4:150:26:1008:-81.9995,0,-4.83377 0/1:55:41,14:41:1578:14:543:-32.6594,0,-125.731 0/1:47:28,19:28:1053:19:736:-52.4228,0,-80.8715 0/1:7:6,1:6:232:1:39:-1.78935,0,-19.1419 dDocent_Contig_12598 57 . T A 200.414 . AB=0.2;ABP=46.0055;AC=2;AF=0.25;AN=8;AO=11;CIGAR=1X;DP=86;DPB=86;DPRA=1.77419;EPP=26.8965;EPPR=165.871;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.986667;PAO=0;PQA=0;PQR=0;PRO=0;QA=436;QR=3021;RO=75;RPL=11;RPP=26.8965;RPPR=165.871;RPR=0;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=75;SRP=165.871;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:19:19,0:19:761:0:0:0,-5.71957,-68.811 0/1:38:34,4:34:1374:4:159:-3.2523,0,-112.476 0/0:12:12,0:12:477:0:0:0,-3.61236,-43.2806 0/1:17:10,7:10:409:7:277:-20.181,0,-32.0531 dDocent_Contig_12599 51 . T C 350.681 . AB=0.223684;ABP=53.4113;AC=3;AF=0.375;AN=8;AO=17;CIGAR=1X;DP=104;DPB=104;DPRA=0.904762;EPP=39.9253;EPPR=191.928;GTI=0;LEN=1;MEANALT=1;MQM=50.4706;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=0;PAIREDR=0.954023;PAO=0;PQA=0;PQR=0;PRO=0;QA=688;QR=3398;RO=87;RPL=17;RPP=39.9253;RPPR=191.928;RPR=0;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=87;SRP=191.928;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:38:25,13:25:947:13:527:-35.7582,0,-74.0853 0/1:28:25,3:25:982:3:120:-2.67408,0,-80.2532 0/0:28:28,0:28:1105:0:0:0,-8.42884,-99.7386 0/1:10:9,1:9:364:1:41:-1.04831,0,-30.1141 dDocent_Contig_12601 40 . G A 40.8476 . AB=0.1875;ABP=16.582;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=24;DPB=24;DPRA=4;EPP=9.52472;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=115;QR=849;RO=21;RPL=0;RPP=9.52472;RPPR=48.6112;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:6:6,0:6:242:0:0:0,-1.80618,-22.1569 0/1:16:13,3:13:525:3:115:-5.90825,0,-42.7806 0/0:2:2,0:2:82:0:0:0,-0.60206,-7.77968 ./.:.:.:.:.:.:.:. dDocent_Contig_12602 127 . G A 71.7198 . AB=0.333333;ABP=5.9056;AC=1;AF=0.25;AN=4;AO=4;CIGAR=1X;DP=19;DPB=19;DPRA=1.71429;EPP=11.6962;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=135;QR=499;RO=15;RPL=0;RPP=11.6962;RPPR=35.5824;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=35.5824;SRR=15;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:8,4:8:264:4:135:-8.87094,0,-20.4707 0/0:7:7,0:7:235:0:0:0,-2.10721,-21.4785 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_12603 63 . G A 35.9754 . AB=0.285714;ABP=5.80219;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=42;DPB=42;DPRA=2.23077;EPP=9.52472;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=117;QR=1404;RO=39;RPL=3;RPP=9.52472;RPPR=87.6977;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:10:10,0:10:369:0:0:0,-3.0103,-33.5597 0/0:22:21,1:21:744:1:39:0,-2.7261,-63.3669 0/1:7:5,2:5:186:2:78:-5.29626,0,-14.9936 0/0:3:3,0:3:105:0:0:0,-0.90309,-9.79589 dDocent_Contig_12604 200 . C T 239.877 . AB=0.5625;ABP=3.55317;AC=2;AF=0.25;AN=8;AO=9;CIGAR=1X;DP=33;DPB=33;DPRA=0.941176;EPP=22.5536;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=349;QR=896;RO=24;RPL=9;RPP=22.5536;RPPR=55.1256;RPR=0;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=55.1256;SRR=24;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:3,8:3:99:8:310:-24.9522,0,-5.92613 0/0:9:9,0:9:331:0:0:0,-2.70927,-30.1381 0/0:8:8,0:8:311:0:0:0,-2.40824,-28.3529 0/1:5:4,1:4:155:1:39:-2.39141,0,-12.8203 dDocent_Contig_12605 107 . N T 530.731 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=17;CIGAR=1X;DP=17;DPB=17;DPRA=0;EPP=39.9253;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=572;QR=0;RO=0;RPL=0;RPP=39.9253;RPPR=0;RPR=17;RUN=1;SAF=0;SAP=39.9253;SAR=17;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:6:0,6:0:0:6:193:-17.6854,-1.80618,0 1/1:6:0,6:0:0:6:209:-19.1511,-1.80618,0 1/1:5:0,5:0:0:5:170:-15.6346,-1.50515,0 ./.:.:.:.:.:.:.:. dDocent_Contig_12606 14 . C T 1684.14 . AB=0.349206;ABP=40.3389;AC=4;AF=0.5;AN=8;AO=66;CIGAR=1M2I3M1X;DP=189;DPB=215.4;DPRA=0;EPP=146.327;EPPR=270.101;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2571;QR=4832;RO=123;RPL=0;RPP=146.327;RPPR=270.101;RPR=66;RUN=1;SAF=66;SAP=146.327;SAR=0;SRF=123;SRP=270.101;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:60:30,30:30:1190:30:1189:-89.2302,0,-89.3188 0|1:72:55,17:55:2169:17:644:-36.6102,0,-173.723 0|1:35:22,13:22:861:13:505:-35.2559,0,-67.2701 0|1:22:16,6:16:612:6:233:-14.7153,0,-48.7899 dDocent_Contig_12607 7 . T A 419.441 . AB=0.234043;ABP=60.7622;AC=4;AF=0.5;AN=8;AO=22;CIGAR=1X;DP=94;DPB=94;DPRA=0;EPP=50.7827;EPPR=159.356;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=846;QR=2776;RO=72;RPL=0;RPP=50.7827;RPPR=159.356;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=72;SRP=159.356;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:34:28,6:28:1082:6:233:-11.1051,0,-87.4507 0/1:43:30,13:30:1159:13:498:-32.2219,0,-91.6644 0/1:14:12,2:12:459:2:76:-3.00025,0,-37.4448 0/1:3:2,1:2:76:1:39:-2.99347,0,-6.31158 dDocent_Contig_12608 15 . C A 92.8269 . AB=0.333333;ABP=6.62942;AC=3;AF=0.375;AN=8;AO=5;CIGAR=1X1M1X;DP=25;DPB=25;DPRA=0.5;EPP=13.8677;EPPR=38.1882;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=200;QR=781;RO=20;RPL=0;RPP=13.8677;RPPR=46.4397;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=19;SRP=38.1882;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:7:5,2:5:196:2:80:-5.48436,0,-15.9056 0|0:10:10,0:10:392:0:0:0,-3.0103,-35.6356 0|1:4:3,1:3:116:1:40:-2.79156,0,-9.61216 0|1:4:2,2:2:77:2:80:-6.38745,0,-6.10408 dDocent_Contig_12609 7 . T C 886.856 . AB=0.237569;ABP=111.284;AC=4;AF=0.5;AN=8;AO=43;CIGAR=1X;DP=181;DPB=181;DPRA=0;EPP=96.3836;EPPR=300.502;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=0.790698;PAIREDR=0.985401;PAO=0;PQA=0;PQR=0;PRO=0;QA=1656;QR=5239;RO=137;RPL=0;RPP=96.3836;RPPR=300.502;RPR=43;RUN=1;SAF=43;SAP=96.3836;SAR=0;SRF=137;SRP=300.502;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:22,8:22:848:8:305:-18.7778,0,-67.6117 0/1:46:30,16:30:1145:16:613:-41.6603,0,-89.5032 0/1:54:40,13:40:1526:13:506:-29.7491,0,-121.484 0/1:51:45,6:45:1720:6:232:-5.8964,0,-139.708 dDocent_Contig_12610 109 . C A 164.629 . AB=0.333333;ABP=8.80089;AC=4;AF=0.666667;AN=6;AO=15;CIGAR=1X2M1X;DP=32;DPB=32;DPRA=0;EPP=35.5824;EPPR=31.7504;GTI=0;LEN=1;MEANALT=1;MQM=20;MQMR=57.5294;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.941176;PAO=0;PQA=0;PQR=0;PRO=0;QA=550;QR=567;RO=17;RPL=0;RPP=35.5824;RPPR=39.9253;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=1;SRP=31.7504;SRR=16;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:8:1,7:1:41:7:256:-10.9413,-0.610377,0 .:.:.:.:.:.:.:. 0|1:13:7,6:7:240:6:222:-7.03989,0,-18.0218 0|1:11:9,2:9:286:2:72:-0.467881,0,-22.7375 dDocent_Contig_12611 14 . C A 323.552 . AB=0.304348;ABP=18.305;AC=2;AF=0.25;AN=8;AO=14;CIGAR=1X;DP=65;DPB=65;DPRA=2.42105;EPP=33.4109;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=543;QR=2017;RO=51;RPL=0;RPP=33.4109;RPPR=113.755;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:13,9:13:510:9:348:-25.0549,0,-39.6203 0/1:24:19,5:19:763:5:195:-10.6982,0,-61.7666 0/0:13:13,0:13:503:0:0:0,-3.91339,-45.6107 0/0:6:6,0:6:241:0:0:0,-1.80618,-22.0658 dDocent_Contig_12612 162 . A G 542.38 . AB=0.423077;ABP=5.68288;AC=4;AF=0.5;AN=8;AO=22;CIGAR=1X;DP=52;DPB=52;DPRA=0;EPP=50.7827;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=842;QR=1193;RO=30;RPL=22;RPP=50.7827;RPPR=68.1545;RPR=0;RUN=1;SAF=0;SAP=50.7827;SAR=22;SRF=0;SRP=68.1545;SRR=30;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:7,10:7:284:10:370:-28.5201,0,-20.8159 0/1:27:18,9:18:706:9:349:-23.6361,0,-55.7314 0/1:4:2,2:2:80:2:82:-6.57556,0,-6.38767 0/1:4:3,1:3:123:1:41:-2.89045,0,-10.2607 dDocent_Contig_12613 184 . A G 70.5658 . AB=0.3;ABP=6.48466;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=50;DPB=50;DPRA=0.75;EPP=9.52472;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=123;QR=1764;RO=47;RPL=3;RPP=9.52472;RPPR=105.07;RPR=0;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=105.07;SRR=47;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:7,3:7:227:3:123:-8.45449,0,-17.7254 0/0:15:15,0:15:574:0:0:0,-4.51545,-51.9857 0/0:20:20,0:20:759:0:0:0,-6.0206,-68.6133 0/0:5:5,0:5:204:0:0:0,-1.50515,-18.744 dDocent_Contig_12614 74 . G A 2350.49 . AB=0.496894;ABP=3.02379;AC=5;AF=0.625;AN=8;AO=82;CIGAR=1X;DP=163;DPB=163;DPRA=0;EPP=181.071;EPPR=178.9;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.97561;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3196;QR=3136;RO=81;RPL=82;RPP=181.071;RPPR=178.9;RPR=0;RUN=1;SAF=82;SAP=181.071;SAR=0;SRF=81;SRP=178.9;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:61:34,27:34:1282:27:1035:-75.08,0,-97.2886 0/1:79:38,41:38:1501:41:1614:-121.722,0,-111.56 0/1:21:9,12:9:353:12:468:-36.147,0,-25.8098 1/1:2:0,2:0:0:2:79:-7.49763,-0.60206,0 dDocent_Contig_12616 13 . G A 1068.93 . AB=0.195122;ABP=234.722;AC=4;AF=0.5;AN=8;AO=56;CIGAR=1X;DP=287;DPB=287;DPRA=0;EPP=124.613;EPPR=495.935;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.0357143;PAIREDR=0.127753;PAO=0;PQA=0;PQR=0;PRO=0;QA=2194;QR=9048;RO=227;RPL=0;RPP=124.613;RPPR=495.935;RPR=56;RUN=1;SAF=56;SAP=124.613;SAR=0;SRF=227;SRP=495.935;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:119:92,24:92:3684:24:940:-49.5771,0,-296.247 0/1:59:47,12:47:1862:12:467:-24.6143,0,-150.022 0/1:82:75,7:75:2982:7:276:-0.523274,0,-243.79 0/1:27:13,13:13:520:13:511:-38.0962,0,-38.9108 dDocent_Contig_12617 56 . A G 306.283 . AB=0.297872;ABP=19.6891;AC=4;AF=0.5;AN=8;AO=14;CIGAR=1X;DP=47;DPB=47;DPRA=0;EPP=33.4109;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=562;QR=1305;RO=33;RPL=14;RPP=33.4109;RPPR=74.6689;RPR=0;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:5:4,1:4:151:1:40:-2.49053,0,-12.448 0/1:8:3,5:3:121:5:198:-15.7895,0,-8.87196 0/1:18:12,6:12:474:6:242:-16.7384,0,-37.5911 0/1:16:14,2:14:559:2:82:-2.9632,0,-45.835 dDocent_Contig_12618 11 . G A 288.205 . AB=0.333333;ABP=11.6962;AC=3;AF=0.375;AN=8;AO=12;CIGAR=1X;DP=40;DPB=40;DPRA=3;EPP=29.068;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=487;QR=1100;RO=28;RPL=0;RPP=29.068;RPPR=63.8115;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:15,9:15:592:9:365:-25.9903,0,-46.392 0/1:6:4,2:4:154:2:82:-5.9735,0,-12.426 0/0:4:4,0:4:162:0:0:0,-1.20412,-14.967 0/1:6:5,1:5:192:1:40:-2.1895,0,-15.8398 dDocent_Contig_12619 26 . T C 82.634 . AB=0.152174;ABP=51.3492;AC=2;AF=0.25;AN=8;AO=8;CIGAR=1X;DP=97;DPB=97;DPRA=3.25926;EPP=20.3821;EPPR=196.271;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=312;QR=3573;RO=89;RPL=0;RPP=20.3821;RPPR=196.271;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=89;SRP=196.271;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:16,3:16:655:3:117:-5.18972,0,-53.562 0/1:27:23,4:23:926:4:158:-6.47155,0,-75.5128 0/0:42:41,1:41:1627:1:37:0,-8.94543,-142.964 0/0:9:9,0:9:365:0:0:0,-2.70927,-33.2151 dDocent_Contig_12620 11 . C A 101.108 . AB=0.120879;ABP=116.619;AC=2;AF=0.25;AN=8;AO=11;CIGAR=1X2M1X;DP=111;DPB=111;DPRA=4.55;EPP=26.8965;EPPR=220.158;GTI=0;LEN=1;MEANALT=1;MQM=59.9091;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=446;QR=3978;RO=100;RPL=0;RPP=26.8965;RPPR=220.158;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=100;SRP=220.158;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:41:35,6:35:1400:6:242:-9.8153,0,-113.916 0|1:50:45,5:45:1779:5:204:-3.69125,0,-145.28 0|0:10:10,0:10:393:0:0:0,-3.0103,-35.724 0|0:10:10,0:10:406:0:0:0,-3.0103,-36.9006 dDocent_Contig_12621 33 . A G 617.444 . AB=0.36;ABP=11.5225;AC=2;AF=0.25;AN=8;AO=18;CIGAR=2X;DP=52;DPB=52;DPRA=8.33333;EPP=42.0968;EPPR=52.9542;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=725;QR=889;RO=23;RPL=0;RPP=42.0968;RPPR=52.9542;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:22:8,5,9:8:309:5,9:199,364:-27.607,-13.6328,-37.4967,0,-8.98118,-22.6611 0|1:23:10,12,1:10:388:12,1:486,36:-37.1053,0,-28.2909,-37.1817,-28.9684,-68.751 0|1:5:3,1,0:3:116:1,0:40,0:-2.38705,0,-9.2085,-3.29014,-9.50953,-12.8061 0|0:2:2,0,0:2:76:0,0:0,0:0,-0.60206,-7.21467,-0.60206,-7.21467,-7.21467 dDocent_Contig_12622 91 . G T 250.594 . AB=0.342105;ABP=11.239;AC=2;AF=0.25;AN=8;AO=13;CIGAR=1X;DP=68;DPB=68;DPRA=1.26667;EPP=31.2394;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.769231;PAIREDR=0.563636;PAO=0;PQA=0;PQR=0;PRO=0;QA=436;QR=1910;RO=55;RPL=13;RPP=31.2394;RPPR=122.441;RPR=0;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:10:10,0:10:351:0:0:0,-3.0103,-31.9281 0/1:14:11,3:11:384:3:100:-5.11611,0,-30.6812 0/1:24:14,10:14:484:10:336:-23.3412,0,-36.665 0/0:20:20,0:20:691:0:0:0,-6.0206,-62.5127 dDocent_Contig_12623 29 . T A 106.727 . AB=0.193548;ABP=28.2974;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X3M1I2M;DP=61;DPB=62;DPRA=3.1;EPP=16.0391;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=237;QR=2155;RO=55;RPL=0;RPP=16.0391;RPPR=122.441;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:20:20,0:20:785:0:0:0,-6.0206,-70.9698 0|1:31:25,6:25:976:6:237:-12.3716,0,-78.8128 0|0:7:7,0:7:273:0:0:0,-2.10721,-24.937 0|0:3:3,0:3:121:0:0:0,-0.90309,-11.2802 dDocent_Contig_12625 44 . G A 52.888 . AB=0.285714;ABP=11.386;AC=2;AF=0.25;AN=8;AO=8;CIGAR=1X;DP=47;DPB=47;DPRA=1.625;EPP=20.3821;EPPR=5.73856;GTI=0;LEN=1;MEANALT=1;MQM=21.625;MQMR=16.8462;NS=4;NUMALT=1;ODDS=0;PAIRED=0.25;PAIREDR=0.0769231;PAO=0;PQA=0;PQR=0;PRO=0;QA=318;QR=1486;RO=39;RPL=0;RPP=20.3821;RPPR=87.6977;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=23;SRP=5.73856;SRR=16;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:8:8,0:8:316:0:0:0,-2.40824,-19.4545 0/1:5:2,3:2:82:3:117:-4.63098,0,-1.05844 0/0:18:16,2:16:618:2:79:0,-4.08891,-17.8274 0/1:16:13,3:13:470:3:122:-3.09349,0,-11.3054 dDocent_Contig_12626 8 . A T 158.787 . AB=0.275862;ABP=15.6647;AC=2;AF=0.25;AN=8;AO=11;CIGAR=1X;DP=72;DPB=72;DPRA=7.66667;EPP=26.8965;EPPR=135.47;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=419;QR=2333;RO=61;RPL=0;RPP=26.8965;RPPR=135.47;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=61;SRP=135.47;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:40:37,3:37:1426:3:116:0,-1.2235,-117.803 0/1:22:17,5:17:635:5:190:-10.8443,0,-50.8588 0/0:3:3,0:3:116:0:0:0,-0.90309,-10.8177 0/1:7:4,3:4:156:3:113:-8.4322,0,-12.3101 dDocent_Contig_12627 20 . T C 2936.06 . AB=0.648;ABP=26.7923;AC=5;AF=0.625;AN=8;AO=93;CIGAR=1X;DP=137;DPB=137;DPRA=0;EPP=204.957;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.978495;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3727;QR=1765;RO=44;RPL=0;RPP=204.957;RPPR=98.5551;RPR=93;RUN=1;SAF=93;SAP=204.957;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:52:14,38:14:557:38:1529:-122.194,0,-34.8166 0/1:43:15,28:15:610:28:1122:-88.3169,0,-42.293 0/1:30:15,15:15:598:15:599:-45.2162,0,-45.1269 1/1:12:0,12:0:0:12:477:-43.2763,-3.61236,0 dDocent_Contig_12628 8 . A G 131.313 . AB=0.153846;ABP=70.66;AC=2;AF=0.25;AN=8;AO=13;CIGAR=1X;DP=164;DPB=164;DPRA=0;EPP=31.2394;EPPR=330.903;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.715232;PAO=0;PQA=0;PQR=0;PRO=0;QA=489;QR=5774;RO=151;RPL=0;RPP=31.2394;RPPR=330.903;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=151;SRP=330.903;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:17,6:17:651:6:234:-14.5074,0,-52.0024 0/0:30:28,2:28:1086:2:77:0,-1.72176,-90.7355 0/0:69:68,1:68:2579:1:27:0,-18.0713,-229.611 0/1:42:38,4:38:1458:4:151:-1.31409,0,-118.856 dDocent_Contig_12629 18 . G A 599.663 . AB=0.380952;ABP=10.7656;AC=4;AF=0.5;AN=8;AO=24;CIGAR=1X;DP=63;DPB=63;DPRA=0;EPP=55.1256;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.692308;PAO=0;PQA=0;PQR=0;PRO=0;QA=943;QR=1575;RO=39;RPL=0;RPP=55.1256;RPPR=87.6977;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:12,4:12:478:4:164:-10.3334,0,-38.5514 0/1:20:11,9:11:448:9:364:-27.1033,0,-34.6554 0/1:16:10,6:10:409:6:241:-17.2498,0,-32.3541 0/1:11:6,5:6:240:5:174:-12.6777,0,-18.6638 dDocent_Contig_12630 24 . C T 1785.95 . AB=0.647059;ABP=12.5903;AC=5;AF=0.625;AN=8;AO=56;CIGAR=1X;DP=75;DPB=75;DPRA=0;EPP=124.613;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2244;QR=751;RO=19;RPL=0;RPP=124.613;RPPR=44.2683;RPR=56;RUN=1;SAF=56;SAP=124.613;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:2,14:2:80:14:561:-46.0144,0,-2.77509 1/1:24:1,23:1:40:23:924:-79.4679,-3.22904,0 0/1:18:8,10:8:303:10:396:-30.5763,0,-22.204 0/1:17:8,9:8:328:9:363:-27.9161,0,-24.7728 dDocent_Contig_12631 80 . T C 496.949 . AB=0.360656;ABP=13.2981;AC=2;AF=0.333333;AN=6;AO=22;CIGAR=1X;DP=64;DPB=64;DPRA=10.1667;EPP=50.7827;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=788;QR=1542;RO=42;RPL=22;RPP=50.7827;RPPR=94.2121;RPR=0;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:32:27,5:27:996:5:167:-5.72302,0,-80.3235 0/1:29:12,17:12:436:17:621:-47.4946,0,-30.852 0/0:3:3,0:3:110:0:0:0,-0.90309,-10.261 ./.:.:.:.:.:.:.:. dDocent_Contig_12632 79 . T G 76.8318 . AB=0.5;ABP=3.0103;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=29;DPB=29;DPRA=0.705882;EPP=11.6962;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=134;QR=972;RO=25;RPL=4;RPP=11.6962;RPPR=57.2971;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:8:8,0:8:315:0:0:0,-2.40824,-28.7132 0/0:9:9,0:9:346:0:0:0,-2.70927,-31.4915 0/1:6:3,3:3:112:3:120:-9.38172,0,-8.63919 0/0:6:5,1:5:199:1:14:0,-0.40619,-16.8886 dDocent_Contig_12633 106 . N T 236.671 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=7;CIGAR=2X;DP=7;DPB=7;DPRA=0;EPP=18.2106;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=241;QR=0;RO=0;RPL=0;RPP=18.2106;RPPR=0;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:1:0,1:0:0:1:35:-3.49863,-0.30103,0 1|1:2:0,2:0:0:2:67:-6.36314,-0.60206,0 1|1:3:0,3:0:0:3:104:-9.70309,-0.90309,0 1|1:1:0,1:0:0:1:35:-3.49863,-0.30103,0 dDocent_Contig_12634 142 . A T 89.0783 . AB=0.2;ABP=22.5536;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=49;DPB=49;DPRA=3.9;EPP=16.0391;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=233;QR=1719;RO=43;RPL=0;RPP=16.0391;RPPR=96.3836;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=96.3836;SRR=43;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:20,5:20:788:5:194:-10.3051,0,-63.7067 0/0:14:13,1:13:526:1:39:0,-0.317855,-43.7904 0/0:7:7,0:7:282:0:0:0,-2.10721,-25.7515 0/0:3:3,0:3:123:0:0:0,-0.90309,-11.4648 dDocent_Contig_12635 1 . N G 153.997 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=159;QR=0;RO=0;RPL=0;RPP=11.6962;RPPR=0;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:118:-11.0027,-0.90309,0 1/1:1:0,1:0:0:1:41:-4.09457,-0.30103,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_12637 29 . C A 66.4848 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X3M1X;DP=2;DPB=2;DPRA=0;EPP=3.0103;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=70;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=1;SAP=3.0103;SAR=1;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:2:0,2:0:0:2:70:-6.6474,-0.60206,0 .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. dDocent_Contig_12639 59 . C A 339.329 . AB=0.40625;ABP=5.45321;AC=3;AF=0.375;AN=8;AO=14;CIGAR=1X;DP=63;DPB=63;DPRA=0;EPP=33.4109;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=572;QR=1964;RO=49;RPL=14;RPP=33.4109;RPPR=109.412;RPR=0;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:31:30,1:30:1198:1:41:0,-5.23736,-104.004 0/1:17:13,4:13:528:4:164:-10.0324,0,-42.7496 0/1:11:5,6:5:197:6:246:-19.2088,0,-14.7942 0/1:4:1,3:1:41:3:121:-10.0759,0,-2.89045 dDocent_Contig_12640 115 . G A 122.876 . AB=0.625;ABP=4.09604;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=24;DPB=24;DPRA=1.5;EPP=13.8677;EPPR=28.7251;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.631579;PAO=0;PQA=0;PQR=0;PRO=0;QA=175;QR=632;RO=19;RPL=0;RPP=13.8677;RPPR=44.2683;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=2;SRP=28.7251;SRR=17;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:8:3,5:3:105:5:175:-13.6855,0,-7.38792 0/0:6:6,0:6:198:0:0:0,-1.80618,-18.1443 0/0:4:4,0:4:123:0:0:0,-1.20412,-11.3751 0/0:6:6,0:6:206:0:0:0,-1.80618,-18.8767 dDocent_Contig_12641 35 . C G 64.7465 . AB=0.151515;ABP=37.8197;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X1M1I1X1M1X;DP=90;DPB=91;DPRA=4.71429;EPP=13.8677;EPPR=178.9;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.950617;PAO=0;PQA=0;PQR=0;PRO=0;QA=197;QR=3188;RO=81;RPL=0;RPP=13.8677;RPPR=178.9;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=81;SRP=178.9;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:43:39,0,4:39:1537:0,4:0,142:-0.181598,-11.9218,-138.405,0,-126.842,-125.638 0|1:33:28,5,0:28:1108:5,0:197,0:-8.1719,0,-90.0774,-16.6007,-91.5825,-107.789 0|0:5:5,0,0:5:194:0,0:0,0:0,-1.50515,-17.832,-1.50515,-17.832,-17.832 0|0:9:9,0,0:9:349:0,0:0,0:0,-2.70927,-31.769,-2.70927,-31.769,-31.769 dDocent_Contig_12642 57 . A G 101.804 . AB=0;ABP=0;AC=2;AF=0.333333;AN=6;AO=3;CIGAR=1X;DP=42;DPB=42;DPRA=0.153846;EPP=9.52472;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=104;QR=1466;RO=39;RPL=0;RPP=9.52472;RPPR=87.6977;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:104:-9.70309,-0.90309,0 0/0:28:28,0:28:1084:0:0:0,-8.42884,-97.8567 0/0:11:11,0:11:382:0:0:0,-3.31133,-34.7039 ./.:.:.:.:.:.:.:. dDocent_Contig_12643 98 . N A 546.286 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=17;CIGAR=1X;DP=17;DPB=17;DPRA=0;EPP=39.9253;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=1.69407e-21;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=589;QR=0;RO=0;RPL=17;RPP=39.9253;RPPR=0;RPR=0;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:11:0,11:0:0:11:381:-34.6234,-3.31133,0 1/1:4:0,4:0:0:4:140:-12.9449,-1.20412,0 ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:68:-6.45788,-0.60206,0 dDocent_Contig_12644 12 . A C 1277.81 . AB=0.573333;ABP=6.51361;AC=4;AF=0.5;AN=8;AO=43;CIGAR=1X;DP=75;DPB=75;DPRA=0;EPP=96.3836;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.9375;PAO=0;PQA=0;PQR=0;PRO=0;QA=1737;QR=1274;RO=32;RPL=0;RPP=96.3836;RPPR=72.4974;RPR=43;RUN=1;SAF=43;SAP=96.3836;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:9,10:9:368:10:404:-31.0003,0,-27.7658 0/1:24:14,10:14:549:10:399:-29.0435,0,-42.522 0/1:23:7,16:7:276:16:649:-51.82,0,-18.2828 0/1:9:2,7:2:81:7:285:-23.3151,0,-4.97646 dDocent_Contig_12645 111 . C A 61.9852 . AB=0.5;ABP=3.0103;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=50;DPB=50;DPRA=0.409091;EPP=9.52472;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=104;QR=1599;RO=47;RPL=0;RPP=9.52472;RPPR=105.07;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=105.07;SRR=47;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:33:33,0:33:1118:0:0:0,-9.93399,-100.924 0/0:10:10,0:10:341:0:0:0,-3.0103,-31.0203 0/0:1:1,0:1:35:0:0:0,-0.30103,-3.49863 0/1:6:3,3:3:105:3:104:-7.89691,0,-7.98998 dDocent_Contig_12647 12 . A G 35.3579 . AB=0.125;ABP=51.8684;AC=2;AF=0.25;AN=8;AO=5;CIGAR=1X2M1X;DP=103;DPB=103;DPRA=0.634921;EPP=13.8677;EPPR=215.815;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.3367;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.989796;PAO=0;PQA=0;PQR=0;PRO=0;QA=202;QR=3900;RO=98;RPL=0;RPP=13.8677;RPPR=215.815;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=98;SRP=215.815;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:30:30,0:30:1200:0:0:0,-9.0309,-108.279 0|0:33:33,0:33:1314:0:0:0,-9.93399,-118.462 0|1:15:13,2:13:516:2:80:-3.07634,0,-42.267 0|1:25:22,3:22:870:3:122:-3.84674,0,-70.7963 dDocent_Contig_12648 57 . T C 326.466 . AB=0.238095;ABP=40.5458;AC=2;AF=0.25;AN=8;AO=15;CIGAR=1X;DP=105;DPB=105;DPRA=1.5;EPP=35.5824;EPPR=198.443;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.622222;PAO=0;PQA=0;PQR=0;PRO=0;QA=603;QR=3520;RO=90;RPL=15;RPP=35.5824;RPPR=198.443;RPR=0;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=90;SRP=198.443;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:9,7:9:354:7:279:-20.6642,0,-27.4012 0/1:47:39,8:39:1518:8:324:-15.3804,0,-122.723 0/0:30:30,0:30:1164:0:0:0,-9.0309,-105.032 0/0:12:12,0:12:484:0:0:0,-3.61236,-43.911 dDocent_Contig_12650 16 . T C 785.845 . AB=0.361446;ABP=16.8502;AC=3;AF=0.375;AN=8;AO=30;CIGAR=6M3X6M;DP=83;DPB=81.8667;DPRA=0;EPP=68.1545;EPPR=87.6977;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1166;QR=1500;RO=39;RPL=0;RPP=68.1545;RPPR=87.6977;RPR=30;RUN=1;SAF=30;SAP=68.1545;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:24:10,6,0,8:10:386:6,0,8:233,0,311:-22.541,-6.40614,-36.297,-25.5513,-38.1031,-57.2487,0,-12.5509,-31.697,-29.2888 0|0:25:15,5,1,4:15:580:5,1,4:182,38,162:-10.3321,0,-46.1234,-11.7312,-44.5126,-59.0715,-1.47398,-34.2665,-46.0102,-47.9226 0|1:21:5,0,2,14:5:193:0,2,14:0,70,531:-42.0522,-43.5574,-59.4099,-37.8667,-53.7185,-53.1165,0,-15.8757,-10.1916,-11.6613 0|1:13:9,0,0,4:9:341:0,0,4:0,0,162:-11.0536,-13.7628,-41.6971,-13.7628,-41.6971,-41.6971,0,-28.3308,-28.3308,-27.1266 dDocent_Contig_12651 21 . G A 130.414 . AB=0.186047;ABP=39.8243;AC=2;AF=0.25;AN=8;AO=8;CIGAR=1X;DP=81;DPB=81;DPRA=1.13158;EPP=20.3821;EPPR=161.528;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.917808;PAO=0;PQA=0;PQR=0;PRO=0;QA=318;QR=2878;RO=73;RPL=0;RPP=20.3821;RPPR=161.528;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=73;SRP=161.528;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:18,3:18:704:3:119:-4.77338,0,-57.3616 0/0:34:34,0:34:1344:0:0:0,-10.235,-121.225 0/1:22:17,5:17:669:5:199:-11.6657,0,-53.9171 0/0:4:4,0:4:161:0:0:0,-1.20412,-14.8753 dDocent_Contig_12652 17 . T A 1457.02 . AB=0.590361;ABP=8.89682;AC=4;AF=0.5;AN=8;AO=49;CIGAR=1X;DP=83;DPB=83;DPRA=0;EPP=109.412;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1963;QR=1376;RO=34;RPL=0;RPP=109.412;RPPR=76.8404;RPR=49;RUN=1;SAF=49;SAP=109.412;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:15,15:15:605:15:600:-45.3075,0,-45.7567 0/1:29:13,16:13:526:16:630:-48.3018,0,-38.9571 0/1:20:3,17:3:122:17:692:-56.5868,0,-5.35189 0/1:4:3,1:3:123:1:41:-2.89045,0,-10.2607 dDocent_Contig_12654 19 . A G 490.282 . AB=0.52;ABP=3.09716;AC=3;AF=0.375;AN=8;AO=16;CIGAR=7M1X3M;DP=64;DPB=67.0909;DPRA=0;EPP=37.7539;EPPR=87.6977;GTI=0;LEN=1;MEANALT=2.66667;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=0.375;PAIREDR=0.974359;PAO=0;PQA=0;PQR=0;PRO=0;QA=641;QR=1477;RO=39;RPL=0;RPP=37.7539;RPPR=87.6977;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:31:27,0,0,2:27:1018:0,0,2:0,0,82:0,-8.12781,-91.5592,-8.12781,-91.5592,-91.5592,-1.31486,-84.7887,-84.7887,-84.1866 0|1:25:8,1,2,13:8:313:1,2,13:39,78,518:-40.2701,-39.4726,-64.9073,-36.2669,-58.7969,-61.4006,0,-22.5451,-19.3386,-21.8382 0|0:7:4,3,0,0:4:146:3,0,0:109,0,0:-8.05973,0,-11.3882,-9.26385,-12.2913,-21.1913,-9.26385,-12.2913,-21.1913,-21.1913 1|1:1:0,0,0,1:0:0:0,0,1:0,0,41:-4.09457,-4.09457,-4.09457,-4.09457,-4.09457,-4.09457,-0.30103,-0.30103,-0.30103,0 dDocent_Contig_12656 31 . T A 181.57 . AB=0.171429;ABP=35.8306;AC=2;AF=0.25;AN=8;AO=6;CIGAR=2X;DP=73;DPB=73;DPRA=0.307018;EPP=16.0391;EPPR=133.299;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=243;QR=2420;RO=60;RPL=0;RPP=16.0391;RPPR=133.299;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:20:13,2,5:13:522:2,5:82,202:-12.7356,-9.8791,-52.2882,0,-36.2363,-41.5005 0|0:38:36,0,2:36:1458:0,2:0,82:0,-10.8371,-131.054,-3.65946,-124.286,-123.684 0|1:9:6,3,0:6:236:3,0:120,0:-8.47842,0,-18.9012,-10.2846,-19.8043,-29.6916 0|1:6:5,1,0:5:204:1,0:41,0:-2.28839,0,-16.9379,-3.79354,-17.2389,-20.6233 dDocent_Contig_12657 97 . C T 128.938 . AB=0.269231;ABP=15.0369;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=38;DPB=38;DPRA=6.5;EPP=18.2106;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.714286;PAIREDR=0.677419;PAO=0;PQA=0;PQR=0;PRO=0;QA=242;QR=1041;RO=31;RPL=7;RPP=18.2106;RPPR=70.3259;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:19,7:19:640:7:242:-14.2909,0,-50.0879 0/0:9:9,0:9:301:0:0:0,-2.70927,-27.414 0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827 0/0:2:2,0:2:64:0:0:0,-0.60206,-6.07837 dDocent_Contig_12659 7 . T C 1608.21 . AB=0.483607;ABP=3.29508;AC=4;AF=0.5;AN=8;AO=59;CIGAR=1X;DP=122;DPB=122;DPRA=0;EPP=131.127;EPPR=139.813;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2262;QR=2371;RO=63;RPL=0;RPP=131.127;RPPR=139.813;RPR=59;RUN=1;SAF=59;SAP=131.127;SAR=0;SRF=63;SRP=139.813;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:12,17:12:463:17:658:-50.8272,0,-33.2916 0/1:40:25,15:25:934:15:584:-40.862,0,-72.3271 0/1:23:10,13:10:376:13:503:-38.6951,0,-27.2651 0/1:30:16,14:16:598:14:517:-37.835,0,-45.1215 dDocent_Contig_12660 198 . T A 164.34 . AB=0.272727;ABP=17.8158;AC=4;AF=0.5;AN=8;AO=9;CIGAR=1X;DP=33;DPB=33;DPRA=0;EPP=22.5536;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.777778;PAIREDR=0.875;PAO=0;PQA=0;PQR=0;PRO=0;QA=349;QR=894;RO=24;RPL=9;RPP=22.5536;RPPR=55.1256;RPR=0;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=55.1256;SRR=24;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:8:5,3:5:186:3:115:-8.31665,0,-14.6921 0/1:11:8,3:8:304:3:116:-7.50637,0,-24.4067 0/1:9:8,1:8:287:1:39:-1.18729,0,-23.4617 0/1:5:3,2:3:117:2:79:-5.99248,0,-9.40523 dDocent_Contig_12661 17 . A C 194.406 . AB=0.222222;ABP=33.1696;AC=2;AF=0.25;AN=8;AO=10;CIGAR=1X;DP=81;DPB=81;DPRA=1.25;EPP=24.725;EPPR=157.185;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.873239;PAO=0;PQA=0;PQR=0;PRO=0;QA=396;QR=2801;RO=71;RPL=0;RPP=24.725;RPPR=157.185;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=71;SRP=157.185;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:25,6:25:1010:6:243:-12.9157,0,-81.8625 0/0:34:34,0:34:1346:0:0:0,-10.235,-121.401 0/1:14:10,4:10:366:4:153:-9.9226,0,-29.0629 0/0:2:2,0:2:79:0:0:0,-0.60206,-7.49724 dDocent_Contig_12662 32 . G A 214.141 . AB=0.214286;ABP=22.8638;AC=4;AF=0.5;AN=8;AO=9;CIGAR=1X;DP=53;DPB=53;DPRA=0.469697;EPP=22.5536;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=58.9318;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.977273;PAO=0;PQA=0;PQR=0;PRO=0;QA=356;QR=1767;RO=44;RPL=0;RPP=22.5536;RPPR=98.5551;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:6,4:6:230:4:158:-11.5884,0,-15.58 0/1:18:16,2:16:649:2:82:-2.36114,0,-53.3243 0/0:22:22,0:22:888:0:0:0,-6.62266,-80.2278 1/1:3:0,3:0:0:3:116:-10.8175,-0.90309,0 dDocent_Contig_12664 119 . G A 203.824 . AB=0.571429;ABP=3.63072;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=41;DPB=41;DPRA=1.55556;EPP=20.3821;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=285;QR=1201;RO=33;RPL=0;RPP=20.3821;RPPR=74.6689;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=74.6689;SRR=33;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:6,8:6:220:8:285:-21.78,0,-15.9411 0/0:15:15,0:15:545:0:0:0,-4.51545,-49.3879 0/0:10:10,0:10:363:0:0:0,-3.0103,-33.0161 0/0:2:2,0:2:73:0:0:0,-0.60206,-6.9313 dDocent_Contig_12665 15 . C T 215.398 . AB=0.222222;ABP=27.1378;AC=2;AF=0.25;AN=8;AO=8;CIGAR=1X2M1X3M3X7M;DP=59;DPB=59;DPRA=0;EPP=20.3821;EPPR=81.1833;GTI=0;LEN=1;MEANALT=2;MQM=56.75;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=315;QR=1360;RO=36;RPL=0;RPP=20.3821;RPPR=81.1833;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:23:12,0,4,4:12:453:0,4,4:0,152,158:-9.47298,-13.0853,-50.2814,-11.5068,-48.6564,-47.4523,0,-37.2632,-35.6469,-36.059 0|0:12:7,2,0,2:7:255:2,0,2:78,0,81:-4.57672,-0.283643,-20.4827,-6.68393,-21.0848,-27.4927,0,-14.3984,-20.8082,-20.2062 0|1:17:12,4,0,0:12:461:4,0,0:160,0,0:-9.64219,0,-36.73,-13.2546,-37.9341,-51.1041,-13.2546,-37.9341,-51.1041,-51.1041 0|1:7:5,2,0,0:5:191:2,0,0:77,0,0:-5.1924,0,-15.4512,-6.69754,-16.0533,-22.3673,-6.69754,-16.0533,-22.3673,-22.3673 dDocent_Contig_12666 7 . T A 186.508 . AB=0.3;ABP=13.4334;AC=2;AF=0.25;AN=8;AO=9;CIGAR=1X3M1X1M1X3M2X3M1X;DP=57;DPB=57;DPRA=1.11111;EPP=22.5536;EPPR=105.07;GTI=0;LEN=1;MEANALT=1.5;MQM=51;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=338;QR=1848;RO=47;RPL=0;RPP=22.5536;RPPR=105.07;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:26:26,0:26:1016:0:0:0,-7.82678,-91.7428 0|1:24:19,4:19:753:4:154:-6.95246,0,-60.9158 0|1:6:1,5:1:40:5:184:-15.0307,0,-2.1895 0|0:1:1,0:1:39:0:0:0,-0.30103,-3.89656 dDocent_Contig_12668 7 . T C 776.452 . AB=0.537037;ABP=3.6537;AC=4;AF=0.5;AN=8;AO=29;CIGAR=1X;DP=54;DPB=54;DPRA=0;EPP=65.983;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.931034;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1097;QR=967;RO=25;RPL=0;RPP=65.983;RPPR=57.2971;RPR=29;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:10,8:10:383:8:311:-22.9358,0,-29.4069 0/1:18:4,14:4:156:14:517:-41.4409,0,-8.99875 0/1:8:2,6:2:78:6:230:-18.6581,0,-4.99523 0/1:10:9,1:9:350:1:39:-0.886264,0,-28.8511 dDocent_Contig_12669 21 . T G 704.147 . AB=0.277778;ABP=41.6143;AC=5;AF=0.625;AN=8;AO=28;CIGAR=1X;DP=93;DPB=93;DPRA=0;EPP=63.8115;EPPR=144.156;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1127;QR=2301;RO=65;RPL=0;RPP=63.8115;RPPR=144.156;RPR=28;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=65;SRP=144.156;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:51:37,14:37:1304:14:574:-36.6485,0,-102.293 0/1:32:26,6:26:926:6:240:-12.3425,0,-74.0163 0/1:7:2,5:2:71:5:192:-15.5411,0,-4.63469 1/1:3:0,3:0:0:3:121:-11.2802,-0.90309,0 dDocent_Contig_12671 15 . T G 318.511 . AB=0.125;ABP=296.159;AC=2;AF=0.25;AN=8;AO=35;CIGAR=1X;DP=391;DPB=391;DPRA=0;EPP=79.0118;EPPR=708.129;GTI=0;LEN=1;MEANALT=1;MQM=59.8;MQMR=59.9607;NS=4;NUMALT=1;ODDS=0;PAIRED=0.857143;PAIREDR=0.741573;PAO=0;PQA=0;PQR=0;PRO=0;QA=1391;QR=13118;RO=356;RPL=0;RPP=79.0118;RPPR=776.054;RPR=35;RUN=1;SAF=35;SAP=79.0118;SAR=0;SRF=348;SRP=708.129;SRR=8;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:118:104,14:104:3840:14:564:-15.5808,0,-310.196 0/0:92:89,3:89:3247:3:123:0,-16.23,-280.837 0/1:122:106,16:106:3907:16:623:-19.6682,0,-315.017 0/0:59:57,2:57:2124:2:81:0,-10.0951,-183.714 dDocent_Contig_12672 72 . T G 1745.28 . AB=0.676923;ABP=20.6827;AC=5;AF=0.625;AN=8;AO=62;CIGAR=1X2M1X;DP=83;DPB=83;DPRA=0;EPP=137.642;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2202;QR=683;RO=21;RPL=62;RPP=137.642;RPPR=48.6112;RPR=0;RUN=1;SAF=62;SAP=137.642;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:18:0,18:0:0:18:644:-58.2896,-5.41854,0 0|1:22:6,16:6:204:16:554:-43.5641,0,-12.0711 0|1:34:9,25:9:283:25:901:-71.1715,0,-15.5422 0|1:9:6,3:6:196:3:103:-6.90063,0,-15.2519 dDocent_Contig_12673 139 . A T 150.694 . AB=0.0952381;ABP=32.8939;AC=0;AF=0;AN=8;AO=2;CIGAR=1X3M21I13M1I5M1X;DP=51;DPB=54.6522;DPRA=0;EPP=7.35324;EPPR=72.4974;GTI=0;LEN=1;MEANALT=5;MQM=20;MQMR=60;NS=4;NUMALT=5;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=40;QR=1125;RO=32;RPL=0;RPP=7.35324;RPPR=72.4974;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=72.4974;SRR=32;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:21:12,2,0,0,2,3:12:420:2,0,0,2,3:28,0,0,40,116:-5.96899,-8.02641,-41.6055,-9.58135,-42.2075,-43.7868,-9.58135,-42.2075,-43.7868,-43.7868,-7.15279,-39.7676,-41.3425,-41.3425,-40.7405,0,-32.6707,-34.2474,-34.2474,-31.8048,-33.3443 0|0:11:8,0,0,2,0,1:8:278:0,0,2,0,1:0,0,28,0,41:-1.0754,-3.48364,-26.1849,-3.48364,-26.1849,-26.1849,-2.29096,-24.8374,-24.8374,-24.2353,-3.48364,-26.1849,-26.1849,-24.8374,-26.1849,0,-22.7909,-22.7909,-21.4464,-22.7909,-22.4898 0|0:6:1,0,0,0,0,4:1:36:0,0,0,0,4:0,0,0,0,142:-11.4973,-11.7983,-14.7463,-11.7983,-14.7463,-14.7463,-11.7983,-14.7463,-14.7463,-14.7463,-11.7983,-14.7463,-14.7463,-14.7463,-14.7463,0,-3.08597,-3.08597,-3.08597,-3.08597,-1.88185 0|0:13:11,0,2,0,0,0:11:391:0,2,0,0,0:0,72,0,0,0:-2.78174,-6.09307,-37.9573,0,-32.217,-31.615,-6.09307,-37.9573,-32.217,-37.9573,-6.09307,-37.9573,-32.217,-37.9573,-37.9573,-6.09307,-37.9573,-32.217,-37.9573,-37.9573,-37.9573 dDocent_Contig_12674 54 . T C 416.678 . AB=0.142857;ABP=34.0313;AC=4;AF=0.5;AN=8;AO=4;CIGAR=2X3M;DP=104;DPB=104;DPRA=0;EPP=11.6962;EPPR=170.214;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=149;QR=2834;RO=77;RPL=4;RPP=11.6962;RPPR=170.214;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=77;SRP=170.214;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:50:44,0,5,0:44:1648:0,5,0:0,194,0:-2.70056,-15.9459,-150.903,0,-134.963,-133.458,-15.9459,-150.903,-134.963,-150.903 0|1:28:22,2,0,4:22:787:2,0,4:74,0,149:-5.57487,-6.14474,-69.6959,-12.1975,-70.2979,-76.3523,0,-58.0998,-64.1544,-62.9503 0|1:12:6,0,6,0:6:217:0,6,0:0,218,0:-16.3545,-18.1607,-35.8705,0,-18.072,-16.2659,-18.1607,-35.8705,-18.072,-35.8705 0|1:14:5,0,8,0:5:182:0,8,0:0,312,0:-24.4146,-25.9198,-40.7883,0,-15.1019,-12.6937,-25.9198,-40.7883,-15.1019,-40.7883 dDocent_Contig_12675 61 . T G 357.495 . AB=0.277778;ABP=26.1727;AC=1;AF=0.125;AN=8;AO=15;CIGAR=1X;DP=161;DPB=161;DPRA=1.51402;EPP=35.5824;EPPR=320.045;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.993151;PAO=0;PQA=0;PQR=0;PRO=0;QA=593;QR=5825;RO=146;RPL=15;RPP=35.5824;RPPR=320.045;RPR=0;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=146;SRP=320.045;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:86:86,0:86:3441:0:0:0,-25.8886,-309.714 0/1:54:39,15:39:1542:15:593:-37.4484,0,-122.764 0/0:11:11,0:11:446:0:0:0,-3.31133,-40.496 0/0:10:10,0:10:396:0:0:0,-3.0103,-35.9959 dDocent_Contig_12677 98 . N A 291.426 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=9;CIGAR=1X;DP=9;DPB=9;DPRA=0;EPP=22.5536;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=10.8435;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=320;QR=0;RO=0;RPL=9;RPP=22.5536;RPPR=0;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:9:0,9:0:0:9:320:-29.1426,-2.70927,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_12678 56 . G A 117.111 . AB=0.5;ABP=3.0103;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1M1I1X1M1X1M1X3M1I8M;DP=26;DPB=26.5294;DPRA=0.363636;EPP=7.35324;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=22.5;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=45;QR=721;RO=19;RPL=2;RPP=7.35324;RPPR=44.2683;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:11:6,0,5:6:223:0,5:0,174:-12.6885,-14.4947,-32.758,0,-18.6219,-17.1168 0|1:4:2,2,0:2:78:2,0:45,0:-2.50205,0,-6.19935,-3.10411,-6.80141,-9.61316 0|0:11:11,0,0:11:420:0,0:0,0:0,-3.31133,-38.1531,-3.31133,-38.1531,-38.1531 .:.:.:.:.:.:.:. dDocent_Contig_12680 129 . C A 63.6171 . AB=0.266667;ABP=10.1038;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=30;DPB=30;DPRA=3;EPP=11.6962;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=8.67362e-19;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=136;QR=868;RO=26;RPL=0;RPP=11.6962;RPPR=59.4686;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=59.4686;SRR=26;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:2:2,0:2:65:0:0:0,-0.60206,-6.17329 0/1:15:11,4:11:372:4:136:-8.06037,0,-29.2917 0/0:8:8,0:8:274:0:0:0,-2.40824,-24.9939 0/0:5:5,0:5:157:0:0:0,-1.50515,-14.4402 dDocent_Contig_12681 11 . C T 83.1914 . AB=0.238095;ABP=15.5221;AC=2;AF=0.25;AN=8;AO=5;CIGAR=1X;DP=32;DPB=32;DPRA=1.90909;EPP=13.8677;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=192;QR=1060;RO=27;RPL=0;RPP=13.8677;RPPR=61.6401;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:9:9,0:9:342:0:0:0,-2.70927,-31.1242 0/1:11:9,2:9:354:2:80:-4.28046,0,-28.9076 0/1:10:7,3:7:282:3:112:-7.43578,0,-22.7423 0/0:2:2,0:2:82:0:0:0,-0.60206,-7.77968 dDocent_Contig_12682 11 . C T 107.49 . AB=0.2;ABP=26.4622;AC=2;AF=0.25;AN=8;AO=7;CIGAR=1X;DP=71;DPB=71;DPRA=0.742424;EPP=18.2106;EPPR=141.985;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=56.25;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.90625;PAO=0;PQA=0;PQR=0;PRO=0;QA=264;QR=2484;RO=64;RPL=0;RPP=18.2106;RPPR=141.985;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=64;SRP=141.985;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:19:18,1:18:708:1:19:0,-3.8196,-62.1431 0/0:22:22,0:22:829:0:0:0,-6.62266,-67.7495 0/1:21:16,5:16:629:5:204:-12.4224,0,-50.6195 0/1:9:8,1:8:318:1:41:-1.3853,0,-26.277 dDocent_Contig_12683 19 . T C 111.542 . AB=0.8;ABP=6.91895;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=58;DPB=58;DPRA=0.283019;EPP=11.6962;EPPR=120.27;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=155;QR=2119;RO=54;RPL=0;RPP=11.6962;RPPR=120.27;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:18:18,0:18:718:0:0:0,-5.41854,-64.9484 0/0:32:32,0:32:1241:0:0:0,-9.63296,-111.97 0/0:3:3,0:3:120:0:0:0,-0.90309,-11.1879 0/1:5:1,4:1:40:4:155:-12.8193,0,-2.49053 dDocent_Contig_12684 7 . T C 1924.75 . AB=0.492958;ABP=3.07147;AC=4;AF=0.5;AN=8;AO=70;CIGAR=1X;DP=142;DPB=142;DPRA=0;EPP=155.013;EPPR=159.356;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2681;QR=2708;RO=72;RPL=0;RPP=155.013;RPPR=159.356;RPR=70;RUN=1;SAF=70;SAP=155.013;SAR=0;SRF=72;SRP=159.356;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:62:33,29:33:1229:29:1116:-82.0781,0,-92.2363 0/1:48:32,16:32:1212:16:608:-40.6067,0,-94.9233 0/1:20:3,17:3:117:17:658:-53.5365,0,-4.88978 0/1:12:4,8:4:150:8:299:-23.6515,0,-10.2523 dDocent_Contig_12685 39 . G A 84.8316 . AB=0.75;ABP=5.18177;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=51;DPB=51;DPRA=0.255319;EPP=9.52472;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.958333;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=1923;RO=48;RPL=0;RPP=9.52472;RPPR=107.241;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:16:16,0:16:650:0:0:0,-4.81648,-58.8333 0/0:20:20,0:20:790:0:0:0,-6.0206,-71.4201 0/0:11:11,0:11:442:0:0:0,-3.31133,-40.1347 0/1:4:1,3:1:41:3:122:-10.1684,0,-2.89045 dDocent_Contig_12686 42 . C T 77.0609 . AB=0.6;ABP=3.44459;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X2M2X;DP=42;DPB=42;DPRA=0.405405;EPP=9.52472;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=117;QR=1362;RO=35;RPL=0;RPP=9.52472;RPPR=79.0118;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:24:22,0:22:868:0:0:0,-6.62266,-78.0989 0|0:11:9,0:9:342:0:0:0,-2.70927,-30.803 0|0:2:2,0:2:77:0:0:0,-0.60206,-7.30914 0|1:5:2,3:2:75:3:117:-9.40476,0,-5.61444 dDocent_Contig_12687 107 . N G 119.082 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=123;QR=0;RO=0;RPL=0;RPP=11.6962;RPPR=0;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1:0,1:0:0:1:19:-1.89997,-0.30103,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:104:-9.70309,-0.90309,0 dDocent_Contig_12688 18 . C A 75.6632 . AB=0.428571;ABP=3.32051;AC=1;AF=0.125;AN=8;AO=3;CIGAR=2X;DP=35;DPB=35;DPRA=0.75;EPP=9.52472;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=1274;RO=32;RPL=0;RPP=9.52472;RPPR=72.4974;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:11:11,0:11:431:0:0:0,-3.31133,-39.1424 0|0:8:8,0:8:324:0:0:0,-2.40824,-29.5294 0|0:9:9,0:9:357:0:0:0,-2.70927,-32.4924 0|1:7:4,3:4:162:3:122:-9.26528,0,-12.8597 dDocent_Contig_12689 126 . G T 32.1188 . AB=0.3;ABP=6.48466;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=18;DPB=18;DPRA=2.5;EPP=9.52472;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=83;QR=515;RO=15;RPL=0;RPP=9.52472;RPPR=35.5824;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=35.5824;SRR=15;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:7,3:7:235:3:83:-4.73427,0,-18.4682 0/0:3:3,0:3:105:0:0:0,-0.90309,-9.79616 0/0:5:5,0:5:175:0:0:0,-1.50515,-16.0937 ./.:.:.:.:.:.:.:. dDocent_Contig_12690 21 . C A 42.9315 . AB=0.4;ABP=3.44459;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X;DP=52;DPB=52;DPRA=0.319149;EPP=7.35324;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=79;QR=1997;RO=50;RPL=0;RPP=7.35324;RPPR=111.584;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:17:17,0:17:672:0:0:0,-5.11751,-60.8087 0/0:17:17,0:17:685:0:0:0,-5.11751,-61.978 0/0:13:13,0:13:527:0:0:0,-3.91339,-47.7766 0/1:5:3,2:3:113:2:79:-5.99209,0,-9.03087 dDocent_Contig_12691 143 . G A 33.847 . AB=0.272727;ABP=7.94546;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=75;DPB=75;DPRA=0.515625;EPP=9.52472;EPPR=159.356;GTI=0;LEN=1;MEANALT=1;MQM=57;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.986111;PAO=0;PQA=0;PQR=0;PRO=0;QA=90;QR=2547;RO=72;RPL=0;RPP=9.52472;RPPR=159.356;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=159.356;SRR=72;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:21:21,0:21:744:0:0:0,-6.32163,-67.2835 0/0:28:28,0:28:956:0:0:0,-8.42884,-86.3348 0/0:15:15,0:15:564:0:0:0,-4.51545,-51.095 0/1:11:8,3:8:283:3:90:-5.08349,0,-22.5014 dDocent_Contig_12693 13 . C A 594.908 . AB=0.0776699;ABP=162.582;AC=3;AF=0.375;AN=8;AO=8;CIGAR=1X4M;DP=169;DPB=169;DPRA=1.90741;EPP=20.3821;EPPR=287.473;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=46.0611;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.320611;PAO=0;PQA=0;PQR=0;PRO=0;QA=313;QR=5135;RO=131;RPL=0;RPP=20.3821;RPPR=287.473;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=131;SRP=287.473;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:27:26,0,0:26:1013:0,0:0,0:0,-7.82678,-75.9022,-7.82678,-75.9022,-75.9022 0|1:66:51,13,2:51:2013:13,2:521,81:-27.5672,0,-138.305,-36.24,-135.537,-177.87 0|1:39:34,5,0:34:1331:5,0:200,0:-6.63975,0,-84.0634,-16.8748,-85.5685,-102.055 0|1:37:20,11,6:20:778:11,6:445,232:-30.6818,0,-56.709,-17.6557,-40.9629,-75.8608 dDocent_Contig_12694 66 . C A 94.4609 . AB=0.307692;ABP=7.18621;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=72;DPB=72;DPRA=0.661017;EPP=11.6962;EPPR=150.67;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=163;QR=2678;RO=68;RPL=4;RPP=11.6962;RPPR=150.67;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=68;SRP=150.67;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:43:43,0:43:1690:0:0:0,-12.9443,-152.321 0/0:6:6,0:6:235:0:0:0,-1.80618,-21.5202 0/1:13:9,4:9:356:4:163:-11.145,0,-28.4876 0/0:10:10,0:10:397:0:0:0,-3.0103,-36.0874 dDocent_Contig_12695 7 . T C 242.254 . AB=0.428571;ABP=4.87156;AC=4;AF=0.5;AN=8;AO=18;CIGAR=1X3M1I1M2X;DP=42;DPB=44.5714;DPRA=0;EPP=42.0968;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=27;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=695;QR=934;RO=24;RPL=0;RPP=42.0968;RPPR=55.1256;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:12:5,7:5:196:7:271:-13.4736,0,-14.403 0|1:13:8,5:8:313:5:192:-8.31901,0,-24.6218 0|1:14:10,4:10:386:4:154:-5.64381,0,-30.8823 0|1:3:1,2:1:39:2:78:-4.1753,0,-2.99347 dDocent_Contig_12698 35 . A C 180.111 . AB=0.266667;ABP=17.1973;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=55;DPB=55;DPRA=3.6;EPP=20.3821;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=312;QR=1880;RO=47;RPL=0;RPP=20.3821;RPPR=105.07;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:22,8:22:883:8:312:-19.4089,0,-70.7485 0/0:16:16,0:16:632:0:0:0,-4.81648,-57.2141 0/0:4:4,0:4:161:0:0:0,-1.20412,-14.8753 0/0:5:5,0:5:204:0:0:0,-1.50515,-18.744 dDocent_Contig_12700 75 . T A 110.556 . AB=0.230769;ABP=19.3799;AC=2;AF=0.25;AN=8;AO=6;CIGAR=1X;DP=48;DPB=48;DPRA=1.18182;EPP=16.0391;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=239;QR=1670;RO=42;RPL=6;RPP=16.0391;RPPR=94.2121;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:19:19,0:19:753:0:0:0,-5.71957,-68.094 0/1:21:17,4:17:682:4:160:-8.46129,0,-55.3894 0/0:3:3,0:3:121:0:0:0,-0.90309,-11.2802 0/1:5:3,2:3:114:2:79:-5.99209,0,-9.12577 dDocent_Contig_12701 36 . A G 1550.57 . AB=0.535354;ABP=4.08507;AC=4;AF=0.5;AN=8;AO=53;CIGAR=1X;DP=99;DPB=99;DPRA=0;EPP=118.098;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2121;QR=1865;RO=46;RPL=0;RPP=118.098;RPPR=102.898;RPR=53;RUN=1;SAF=53;SAP=118.098;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:45:23,22:23:934:22:873:-65.3274,0,-70.8147 0/1:31:10,21:10:406:21:847:-67.2089,0,-27.5687 0/1:13:6,7:6:243:7:284:-22.02,0,-18.3348 0/1:10:7,3:7:282:3:117:-7.89899,0,-22.7427 dDocent_Contig_12702 37 . T C 169.61 . AB=0.411765;ABP=4.1599;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=30;DPB=30;DPRA=0.653846;EPP=18.2106;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.285714;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=276;QR=866;RO=23;RPL=0;RPP=18.2106;RPPR=52.9542;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:13:13,0:13:493:0:0:0,-3.91339,-44.71 0/1:8:5,3:5:180:3:117:-8.50105,0,-14.14 0/1:9:5,4:5:193:4:159:-11.9829,0,-15.0321 ./.:.:.:.:.:.:.:. dDocent_Contig_12703 195 . T G 122.416 . AB=0.416667;ABP=3.73412;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=20;DPB=20;DPRA=4.5;EPP=13.8677;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=191;QR=609;RO=15;RPL=5;RPP=13.8677;RPPR=35.5824;RPR=0;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=35.5824;SRR=15;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:1:1,0:1:41:0:0:0,-0.30103,-4.09457 0/0:6:6,0:6:242:0:0:0,-1.80618,-22.1573 0/1:12:7,5:7:285:5:191:-13.9394,0,-22.412 0/0:1:1,0:1:41:0:0:0,-0.30103,-4.09457 dDocent_Contig_12704 134 . C T 208.348 . AB=0.416667;ABP=4.45795;AC=2;AF=0.25;AN=8;AO=10;CIGAR=1X;DP=31;DPB=31;DPRA=3.42857;EPP=24.725;EPPR=32.8939;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=58.5714;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.904762;PAO=0;PQA=0;PQR=0;PRO=0;QA=342;QR=726;RO=21;RPL=0;RPP=24.725;RPPR=48.6112;RPR=10;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=2;SRP=32.8939;SRR=19;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:7,2:7:243:2:69:-3.84339,0,-19.4996 0/1:15:7,8:7:237:8:273:-20.3872,0,-17.1459 0/0:6:6,0:6:211:0:0:0,-1.80618,-19.2314 0/0:1:1,0:1:35:0:0:0,-0.30103,-3.49863 dDocent_Contig_12705 59 . G T 50.5274 . AB=0.5;ABP=3.0103;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=18;DPB=18;DPRA=0.571429;EPP=7.35324;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=620;RO=16;RPL=2;RPP=7.35324;RPPR=37.7539;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 0/1:4:2,2:2:81:2:82:-6.57556,0,-6.48161 0/0:9:9,0:9:341:0:0:0,-2.70927,-31.0358 0/0:5:5,0:5:198:0:0:0,-1.50515,-18.1971 dDocent_Contig_12706 117 . A G 287.84 . AB=0.153846;ABP=16.5402;AC=5;AF=0.625;AN=8;AO=2;CIGAR=1X5M1X;DP=37;DPB=37;DPRA=2.16667;EPP=7.35324;EPPR=37.7539;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=70;QR=540;RO=16;RPL=0;RPP=7.35324;RPPR=37.7539;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=37.7539;SRR=16;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:8:7,1,0,0:7:236:1,0,0:35,0,0:0,-1.30983,-20.4715,-2.10721,-20.7725,-21.4316,-2.10721,-20.7725,-21.4316,-21.4316 0|1:13:7,2,2,2:7:235:2,2,2:69,60,70:-3.62343,-2.97966,-21.4209,-0.923465,-17.2331,-19.4001,0,-16.3235,-14.2981,-18.4925 1|1:12:2,7,3,0:2:69:7,3,0:223,87,0:-17.2634,-1.26509,-4.78558,-10.9418,0,-15.6551,-17.8655,-6.89279,-16.5582,-23.4795 1|1:4:0,4,0,0:0:0:4,0,0:139,0,0:-11.2736,-1.20412,0,-11.2736,-1.20412,-11.2736,-11.2736,-1.20412,-11.2736,-11.2736 dDocent_Contig_12707 7 . T G 254.115 . AB=0.246575;ABP=43.7328;AC=4;AF=0.5;AN=8;AO=18;CIGAR=1X;DP=73;DPB=73;DPRA=0;EPP=42.0968;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=52.4444;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.890909;PAO=0;PQA=0;PQR=0;PRO=0;QA=610;QR=2119;RO=55;RPL=0;RPP=42.0968;RPPR=122.441;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:37:28,9:28:1080:9:298:-13.4662,0,-86.3676 0/1:12:11,1:11:428:1:39:-0.284205,0,-35.263 0/1:21:14,7:14:534:7:238:-14.719,0,-42.0813 0/1:3:2,1:2:77:1:35:-2.59554,0,-6.40605 dDocent_Contig_12710 131 . G A 38.2616 . AB=0.666667;ABP=3.73412;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X;DP=31;DPB=31;DPRA=0.321429;EPP=7.35324;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=63;QR=969;RO=29;RPL=0;RPP=7.35324;RPPR=65.983;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=65.983;SRR=29;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:12:12,0:12:404:0:0:0,-3.61236,-36.6849 0/0:2:2,0:2:65:0:0:0,-0.60206,-6.17345 0/0:14:14,0:14:475:0:0:0,-4.21442,-43.0751 0/1:3:1,2:1:25:2:63:-5.08068,0,-1.59677 dDocent_Contig_12712 11 . G A 68.2827 . AB=0.181818;ABP=22.3561;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=104;DPB=104;DPRA=1.31111;EPP=13.8677;EPPR=217.986;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.89899;PAO=0;PQA=0;PQR=0;PRO=0;QA=204;QR=3916;RO=99;RPL=0;RPP=13.8677;RPPR=217.986;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=99;SRP=217.986;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:37:37,0:37:1434:0:0:0,-11.1381,-129.307 0/0:37:36,1:36:1445:1:40:0,-7.14243,-126.298 0/1:22:18,4:18:715:4:164:-8.52724,0,-58.0529 0/0:8:8,0:8:322:0:0:0,-2.40824,-29.3478 dDocent_Contig_12713 26 . C T 181.351 . AB=0.296296;ABP=12.7417;AC=2;AF=0.25;AN=8;AO=8;CIGAR=1X;DP=57;DPB=57;DPRA=0.9;EPP=20.3821;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=321;QR=1959;RO=49;RPL=0;RPP=20.3821;RPPR=109.412;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:15,5:15:607:5:199:-12.2678,0,-48.947 0/0:23:23,0:23:908:0:0:0,-6.92369,-82.0192 0/1:7:4,3:4:164:3:122:-9.26528,0,-13.0427 0/0:7:7,0:7:280:0:0:0,-2.10721,-25.5707 dDocent_Contig_12714 13 . G A 190.224 . AB=0.2;ABP=42.0968;AC=3;AF=0.375;AN=8;AO=10;CIGAR=1X;DP=54;DPB=54;DPRA=4.16667;EPP=24.725;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=408;QR=1716;RO=44;RPL=0;RPP=24.725;RPPR=98.5551;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:20,2:20:756:2:81:-1.06307,0,-61.7216 0/0:4:4,0:4:154:0:0:0,-1.20412,-14.2312 0/1:18:11,7:11:443:7:286:-20.6963,0,-34.8063 0/1:10:9,1:9:363:1:41:-1.08427,0,-30.0238 dDocent_Contig_12715 34 . C T 176.794 . AB=0.321429;ABP=10.7656;AC=2;AF=0.25;AN=8;AO=9;CIGAR=1X;DP=47;DPB=47;DPRA=1.47368;EPP=22.5536;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=320;QR=1511;RO=38;RPL=0;RPP=22.5536;RPPR=85.5263;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:9:9,0:9:347:0:0:0,-2.70927,-31.585 0/1:17:14,3:14:563:3:114:-5.51441,0,-45.8957 0/1:11:5,6:5:193:6:206:-15.5629,0,-14.4253 0/0:10:10,0:10:408:0:0:0,-3.0103,-37.0804 dDocent_Contig_12717 20 . A C 3827.31 . AB=0.540084;ABP=6.3179;AC=4;AF=0.5;AN=8;AO=128;CIGAR=1X;DP=237;DPB=237;DPRA=0;EPP=280.959;EPPR=239.701;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5116;QR=4381;RO=109;RPL=0;RPP=280.959;RPPR=239.701;RPR=128;RUN=1;SAF=128;SAP=280.959;SAR=0;SRF=109;SRP=239.701;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:100:56,44:56:2256:44:1751:-127.692,0,-173.095 0/1:109:42,67:42:1691:67:2700:-210.3,0,-119.597 0/1:14:6,8:6:241:8:304:-23.497,0,-17.8508 0/1:14:5,9:5:193:9:361:-28.6395,0,-13.524 dDocent_Contig_12718 12 . G A 46.9501 . AB=0.1875;ABP=16.582;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=49;DPB=49;DPRA=1.45455;EPP=9.52472;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=117;QR=1827;RO=46;RPL=0;RPP=9.52472;RPPR=102.898;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:13,3:13:527:3:117:-6.09281,0,-42.9603 0/0:15:15,0:15:611:0:0:0,-4.51545,-55.3269 0/0:15:15,0:15:566:0:0:0,-4.51545,-51.2618 0/0:3:3,0:3:123:0:0:0,-0.90309,-11.4648 dDocent_Contig_12720 7 . T C 74.396 . AB=0;ABP=0;AC=2;AF=0.333333;AN=6;AO=3;CIGAR=1X2M1X2M3X;DP=16;DPB=16;DPRA=0.461538;EPP=9.52472;EPPR=31.2394;GTI=0;LEN=1;MEANALT=1;MQM=25;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=120;QR=500;RO=13;RPL=0;RPP=9.52472;RPPR=31.2394;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=13;SRP=31.2394;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:3:0,3:0:0:3:120:-6.96226,-0.90309,0 0|0:7:7,0:7:269:0:0:0,-2.10721,-24.5722 0|0:6:6,0:6:231:0:0:0,-1.80618,-21.157 .:.:.:.:.:.:.:. dDocent_Contig_12721 8 . A G 184.218 . AB=0.538462;ABP=3.17734;AC=2;AF=0.25;AN=8;AO=7;CIGAR=1X3M1X;DP=42;DPB=42;DPRA=0.448276;EPP=18.2106;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=277;QR=1378;RO=35;RPL=0;RPP=18.2106;RPPR=79.0118;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:8:2,6:2:76:6:237:-19.2953,0,-4.80602 0|0:19:19,0:19:753:0:0:0,-5.71957,-68.0976 0|0:10:10,0:10:391:0:0:0,-3.0103,-35.5464 0|1:5:4,1:4:158:1:40:-2.49053,0,-13.0953 dDocent_Contig_12722 133 . A G 316.98 . AB=0.393939;ABP=6.23461;AC=4;AF=0.5;AN=8;AO=13;CIGAR=1X;DP=33;DPB=33;DPRA=0;EPP=31.2394;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=512;QR=763;RO=20;RPL=0;RPP=31.2394;RPPR=46.4397;RPR=13;RUN=1;SAF=0;SAP=31.2394;SAR=13;SRF=0;SRP=46.4397;SRR=20;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:10,1:10:379:1:39:-0.585235,0,-31.1493 0/1:8:3,5:3:114:5:192:-15.2415,0,-8.22374 0/1:5:2,3:2:75:3:122:-9.86734,0,-5.61495 0/1:9:5,4:5:195:4:159:-11.9829,0,-15.2149 dDocent_Contig_12724 24 . G T 343.304 . AB=0.571429;ABP=3.94093;AC=2;AF=0.25;AN=8;AO=13;CIGAR=1X3M1I5M;DP=59;DPB=60.5556;DPRA=1.63333;EPP=31.2394;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=522;QR=1707;RO=43;RPL=0;RPP=31.2394;RPPR=96.3836;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:28:25,1,2:25:991:1,2:41,81:0,-4.14002,-85.4038,-0.849884,-79.0251,-81.8076 0|0:10:9,0,0:9:357:0,0:0,0:0,-2.70927,-32.2828,-2.70927,-32.2828,-32.2828 0|1:13:3,10,0:3:119:10,0:399,0:-32.3567,0,-7.182,-33.2598,-10.1923,-43.0553 0|1:8:6,2,0:6:240:2,0:82,0:-5.37144,0,-19.5678,-7.17762,-20.1698,-26.9405 dDocent_Contig_12725 107 . N A 704.539 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=22;CIGAR=1X;DP=22;DPB=22;DPRA=0;EPP=50.7827;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=760;QR=0;RO=0;RPL=0;RPP=50.7827;RPPR=0;RPR=22;RUN=1;SAF=0;SAP=50.7827;SAR=22;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:6:0,6:0:0:6:210:-19.2425,-1.80618,0 1/1:12:0,12:0:0:12:412:-37.4098,-3.61236,0 1/1:1:0,1:0:0:1:34:-3.39891,-0.30103,0 1/1:3:0,3:0:0:3:104:-9.70309,-0.90309,0 dDocent_Contig_12726 8 . A T 282.485 . AB=0.211268;ABP=54.4222;AC=2;AF=0.25;AN=8;AO=21;CIGAR=1X;DP=182;DPB=182;DPRA=0;EPP=48.6112;EPPR=352.617;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.428571;PAIREDR=0.819876;PAO=0;PQA=0;PQR=0;PRO=0;QA=809;QR=6134;RO=161;RPL=0;RPP=48.6112;RPPR=352.617;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=161;SRP=352.617;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:77:72,5:72:2734:5:189:0,-5.80392,-228.874 0/1:53:41,12:41:1567:12:465:-26.2473,0,-125.344 0/0:34:33,1:33:1260:1:39:0,-6.33846,-109.796 0/1:18:15,3:15:573:3:116:-5.39916,0,-46.4935 dDocent_Contig_12727 105 . N A 232.949 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=8;CIGAR=3X;DP=8;DPB=8;DPRA=0;EPP=20.3821;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=56.375;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=244;QR=0;RO=0;RPL=0;RPP=20.3821;RPPR=0;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:2:0,2:0:0:2:59:-5.60401,-0.60206,0 .:.:.:.:.:.:.:. 1|1:2:0,2:0:0:2:52:-4.93931,-0.60206,0 1|1:4:0,4:0:0:4:133:-12.2736,-1.20412,0 dDocent_Contig_12728 15 . A T 625.33 . AB=0.268293;ABP=41.2494;AC=1;AF=0.125;AN=8;AO=22;CIGAR=1X3M1X;DP=115;DPB=115;DPRA=2.48485;EPP=50.7827;EPPR=191.928;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=874;QR=3439;RO=87;RPL=0;RPP=50.7827;RPPR=191.928;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=87;SRP=191.928;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:38:31,2,5:31:1241:2,5:81,204:-7.50159,-10.1552,-111.777,0,-95.5463,-100.721 0|0:14:14,0,0:14:548:0,0:0,0:0,-4.21442,-49.6608,-4.21442,-49.6608,-49.6608 0|1:44:23,20,0:23:911:20,0:793,0:-58.4293,0,-69.0418,-65.353,-75.0624,-140.335 0|0:19:19,0,0:19:739:0,0:0,0:0,-5.71957,-66.8294,-5.71957,-66.8294,-66.8294 dDocent_Contig_12729 1 . N G 75.9266 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=80;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:80:-7.59157,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_12730 182 . C T 35.2814 . AB=0.142857;ABP=26.2761;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=36;DPB=36;DPRA=2.8;EPP=9.52472;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=1317;RO=33;RPL=3;RPP=9.52472;RPPR=74.6689;RPR=0;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=74.6689;SRR=33;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:18,3:18:729:3:122:-5.05086,0,-59.6131 0/0:9:9,0:9:357:0:0:0,-2.70927,-32.492 0/0:6:6,0:6:231:0:0:0,-1.80618,-21.1526 ./.:.:.:.:.:.:.:. dDocent_Contig_12731 28 . G C 107.35 . AB=0.181818;ABP=32.0291;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=127;DPB=127;DPRA=1.05319;EPP=16.0391;EPPR=265.758;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.917355;PAO=0;PQA=0;PQR=0;PRO=0;QA=241;QR=4731;RO=121;RPL=0;RPP=16.0391;RPPR=265.758;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=121;SRP=265.758;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:33:27,6:27:1072:6:241:-12.1329,0,-86.8343 0/0:61:61,0:61:2384:0:0:0,-18.3628,-214.712 0/0:21:21,0:21:813:0:0:0,-6.32163,-73.4714 0/0:12:12,0:12:462:0:0:0,-3.61236,-41.9173 dDocent_Contig_12732 17 . A G 39.8587 . AB=0.128205;ABP=49.8362;AC=2;AF=0.25;AN=8;AO=7;CIGAR=1X;DP=125;DPB=125;DPRA=0.5;EPP=18.2106;EPPR=259.244;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.974576;PAO=0;PQA=0;PQR=0;PRO=0;QA=276;QR=4749;RO=118;RPL=0;RPP=18.2106;RPPR=259.244;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=118;SRP=259.244;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:50:50,0:50:2017:0:0:0,-15.0515,-181.712 0/0:36:34,2:34:1377:2:73:0,-3.90598,-117.252 0/1:31:27,4:27:1081:4:162:-5.63503,0,-88.2455 0/1:8:7,1:7:274:1:41:-1.68633,0,-22.6179 dDocent_Contig_12733 95 . G T 550.153 . AB=0.210526;ABP=16.8392;AC=5;AF=0.625;AN=8;AO=21;CIGAR=1X;DP=54;DPB=54;DPRA=0;EPP=48.6112;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=746;QR=1139;RO=33;RPL=21;RPP=48.6112;RPPR=74.6689;RPR=0;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0 0/1:19:15,4:15:525:4:143:-7.50188,0,-41.8618 0/0:18:17,1:17:585:1:35:0,-1.91991,-49.4763 1/1:15:1,14:1:29:14:496:-42.0743,-1.61579,0 dDocent_Contig_12735 12 . A T 49.0372 . AB=0.214286;ABP=12.937;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=87;DPB=87;DPRA=0.474576;EPP=11.6962;EPPR=183.243;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.963855;PAO=0;PQA=0;PQR=0;PRO=0;QA=157;QR=3319;RO=83;RPL=0;RPP=11.6962;RPPR=183.243;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=83;SRP=183.243;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:37:37,0:37:1498:0:0:0,-11.1381,-135.059 0/0:22:22,0:22:884:0:0:0,-6.62266,-79.869 0/1:14:11,3:11:433:3:116:-6.60186,0,-35.1057 0/0:14:13,1:13:504:1:41:0,-0.119853,-41.6037 dDocent_Contig_12738 110 . C T 51.6005 . AB=0;ABP=0;AC=2;AF=0.333333;AN=6;AO=17;CIGAR=1X;DP=39;DPB=39;DPRA=0;EPP=39.9253;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=7;MQMR=59.3636;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=592;QR=758;RO=22;RPL=0;RPP=39.9253;RPPR=50.7827;RPR=17;RUN=1;SAF=0;SAP=39.9253;SAR=17;SRF=0;SRP=50.7827;SRR=22;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 0/0:20:16,4:16:549:4:140:0,-4.1717,-47.8773 0/0:15:6,9:6:209:9:313:0,-0.418024,-15.0536 1/1:4:0,4:0:0:4:139:-4.98331,-1.20412,0 dDocent_Contig_12740 54 . C T 549.639 . AB=0.645161;ABP=8.68415;AC=3;AF=0.375;AN=8;AO=20;CIGAR=1X;DP=37;DPB=37;DPRA=1.72222;EPP=24.2907;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.882353;PAO=0;PQA=0;PQR=0;PRO=0;QA=762;QR=650;RO=17;RPL=17;RPP=24.2907;RPPR=39.9253;RPR=3;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:5,14:5:196:14:529:-42.2303,0,-12.2955 0/1:4:1,3:1:40:3:120:-9.98357,0,-2.79156 0/0:6:6,0:6:219:0:0:0,-1.80618,-20.0552 0/1:8:5,3:5:195:3:113:-8.13073,0,-15.513 dDocent_Contig_12741 11 . A T 1322.43 . AB=0.505263;ABP=3.03316;AC=4;AF=0.5;AN=8;AO=48;CIGAR=1X3M2X2M1X;DP=95;DPB=95;DPRA=0;EPP=107.241;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=56.8125;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.978723;PAO=0;PQA=0;PQR=0;PRO=0;QA=1892;QR=1797;RO=47;RPL=0;RPP=107.241;RPPR=105.07;RPR=48;RUN=1;SAF=48;SAP=107.241;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:27:17,10:17:650:10:400:-28.2327,0,-50.7069 0|1:30:16,14:16:610:14:536:-38.4102,0,-46.2063 0|1:26:7,19:7:272:19:754:-58.0482,0,-17.0197 0|1:12:7,5:7:265:5:202:-14.9497,0,-20.5983 dDocent_Contig_12742 99 . N G 162.798 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=5;CIGAR=1X3I1X;DP=5;DPB=12.5;DPRA=0;EPP=13.8677;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=170;QR=0;RO=0;RPL=5;RPP=13.8677;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. 1|1:2:0,2:0:0:2:70:-6.6474,-0.60206,0 1|1:3:0,3:0:0:3:100:-9.3306,-0.90309,0 .:.:.:.:.:.:.:. dDocent_Contig_12743 98 . N A 208.927 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=6;CIGAR=1X;DP=6;DPB=6;DPRA=0;EPP=16.0391;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=209;QR=0;RO=0;RPL=6;RPP=16.0391;RPPR=0;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1:0,1:0:0:1:34:-3.39891,-0.30103,0 1/1:1:0,1:0:0:1:35:-3.49863,-0.30103,0 1/1:2:0,2:0:0:2:70:-6.6474,-0.60206,0 1/1:2:0,2:0:0:2:70:-6.6474,-0.60206,0 dDocent_Contig_12744 130 . C T 55.3761 . AB=0.25;ABP=11.6962;AC=2;AF=0.5;AN=4;AO=4;CIGAR=1X;DP=16;DPB=16;DPRA=0;EPP=11.6962;EPPR=29.068;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=148;QR=438;RO=12;RPL=4;RPP=11.6962;RPPR=29.068;RPR=0;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=29.068;SRR=12;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:7:5,2:5:183:2:74:-4.91867,0,-14.7195 ./.:.:.:.:.:.:.:. 0/1:9:7,2:7:255:2:74:-4.31661,0,-20.5926 ./.:.:.:.:.:.:.:. dDocent_Contig_12745 18 . T C 929.206 . AB=0.533333;ABP=3.58936;AC=4;AF=0.5;AN=8;AO=32;CIGAR=1X;DP=60;DPB=60;DPRA=0;EPP=72.4974;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1299;QR=1118;RO=28;RPL=0;RPP=72.4974;RPPR=63.8115;RPR=32;RUN=1;SAF=32;SAP=72.4974;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:33:12,21:12:487:21:855:-67.3247,0,-34.2475 0/1:6:4,2:4:159:2:80:-5.78539,0,-12.8856 0/1:16:10,6:10:390:6:242:-17.341,0,-30.6396 0/1:5:2,3:2:82:3:122:-9.86734,0,-6.27453 dDocent_Contig_12746 25 . G A 177.82 . AB=0.0714286;ABP=25.3454;AC=0;AF=0;AN=8;AO=3;CIGAR=2M1X6M;DP=96;DPB=93.5556;DPRA=7.66667;EPP=9.52472;EPPR=176.728;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=123;QR=3094;RO=80;RPL=0;RPP=9.52472;RPPR=176.728;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=80;SRP=176.728;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:47:38,8,0:38:1482:8,0:313,0:-14.2783,0,-119.39,-25.7175,-121.799,-147.533 0|0:32:30,0,2:30:1168:0,2:0,82:0,-9.0309,-105.006,-1.85328,-98.2363,-97.6342 0|0:14:9,3,1:9:338:3,1:117,41:-6.90135,0,-26.7626,-6.22257,-24.2787,-33.5972 0|0:3:3,0,0:3:106:0,0:0,0:0,-0.90309,-9.88821,-0.90309,-9.88821,-9.88821 dDocent_Contig_12747 24 . G T 68.2827 . AB=0.173913;ABP=24.253;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=72;DPB=72;DPRA=1.40816;EPP=11.6962;EPPR=150.67;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.985294;PAO=0;PQA=0;PQR=0;PRO=0;QA=164;QR=2693;RO=68;RPL=0;RPP=11.6962;RPPR=150.67;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=68;SRP=150.67;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:19,4:19:749:4:164:-8.22621,0,-60.8064 0/0:9:9,0:9:346:0:0:0,-2.70927,-31.492 0/0:25:25,0:25:1002:0:0:0,-7.52575,-90.4742 0/0:15:15,0:15:596:0:0:0,-4.51545,-53.9776 dDocent_Contig_12748 59 . G C 147.212 . AB=0.269231;ABP=15.0369;AC=2;AF=0.5;AN=4;AO=7;CIGAR=1X;DP=26;DPB=26;DPRA=0;EPP=18.2106;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=283;QR=731;RO=19;RPL=7;RPP=18.2106;RPPR=44.2683;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:7,3:7:281:3:121:-8.2699,0,-22.6517 0/1:16:12,4:12:450:4:162:-10.1503,0,-36.0173 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_12750 26 . T C 1280.51 . AB=0.0952381;ABP=62.7775;AC=0;AF=0;AN=8;AO=4;CIGAR=6M1X6M;DP=95;DPB=53.5385;DPRA=0;EPP=11.6962;EPPR=92.0407;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=161;QR=1600;RO=41;RPL=0;RPP=11.6962;RPPR=92.0407;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:42:16,22,4:16:635:22,4:791,161:-59.6573,0,-45.6479,-51.1985,-39.0006,-102.285 0|0:35:15,19,0:15:575:19,0:717,0:-54.2111,0,-41.4444,-58.7266,-47.164,-105.917 0|0:10:7,3,0:7:275:3,0:114,0:-7.62151,0,-22.1081,-9.72872,-23.0112,-32.3564 0|0:8:3,5,0:3:115:5,0:178,0:-13.9594,0,-8.31575,-14.8625,-9.8209,-24.3106 dDocent_Contig_12751 65 . A C 229.405 . AB=0.45;ABP=3.44459;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=30;DPB=30;DPRA=4;EPP=22.5536;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=58.9524;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.952381;PAO=0;PQA=0;PQR=0;PRO=0;QA=335;QR=830;RO=21;RPL=9;RPP=22.5536;RPPR=48.6112;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:11,9:11:434:9:335:-24.463,0,-33.2316 0/0:2:2,0:2:82:0:0:0,-0.60206,-7.77968 0/0:8:8,0:8:314:0:0:0,-2.40824,-28.622 ./.:.:.:.:.:.:.:. dDocent_Contig_12752 7 . T A 954.76 . AB=0.38;ABP=15.518;AC=4;AF=0.5;AN=8;AO=38;CIGAR=1X;DP=100;DPB=100;DPRA=0;EPP=85.5263;EPPR=137.642;GTI=0;LEN=1;MEANALT=1;MQM=58.2105;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1471;QR=2376;RO=62;RPL=0;RPP=85.5263;RPPR=137.642;RPR=38;RUN=1;SAF=38;SAP=85.5263;SAR=0;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:53:28,25:28:1069:25:969:-70.4633,0,-80.56 0/1:36:27,9:27:1036:9:347:-20.7294,0,-82.7113 0/1:4:1,3:1:39:3:116:-9.60128,0,-2.69244 0/1:7:6,1:6:232:1:39:-1.78202,0,-19.1417 dDocent_Contig_12753 15 . G T 587.06 . AB=0.4;ABP=7.35324;AC=3;AF=0.375;AN=8;AO=20;CIGAR=1X1M;DP=74;DPB=74;DPRA=8.33333;EPP=46.4397;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=804;QR=2027;RO=51;RPL=0;RPP=46.4397;RPPR=113.755;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:40:21,0,19:21:827:0,19:0,763:-56.9475,-63.2691,-131.293,0,-68.4211,-62.7016 0|1:21:18,3,0:18:713:3,0:123,0:-5.14316,0,-58.1746,-10.5617,-59.0777,-69.2319 0|1:10:9,0,1:9:365:0,1:0,41:-1.08427,-3.79354,-33.8901,0,-30.5056,-30.2046 0|0:3:3,0,0:3:122:0,0:0,0:0,-0.90309,-11.3725,-0.90309,-11.3725,-11.3725 dDocent_Contig_12755 51 . A T 36.0112 . AB=0.4;ABP=3.44459;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=72;DPB=72;DPRA=0.558824;EPP=9.52472;EPPR=152.842;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=114;QR=2741;RO=69;RPL=3;RPP=9.52472;RPPR=152.842;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=69;SRP=152.842;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:33:32,1:32:1245:1:41:0,-5.83942,-108.225 0/0:34:34,0:34:1374:0:0:0,-10.235,-123.915 ./.:.:.:.:.:.:.:. 0/1:5:3,2:3:122:2:73:-5.42492,0,-9.86734 dDocent_Contig_12756 9 . G A 982.708 . AB=0.19171;ABP=162.338;AC=4;AF=0.5;AN=8;AO=37;CIGAR=1M8I3M2X4M;DP=193;DPB=222.6;DPRA=0;EPP=83.3548;EPPR=94.2121;GTI=0;LEN=1;MEANALT=4;MQM=56.7568;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1441;QR=1629;RO=42;RPL=0;RPP=83.3548;RPPR=94.2121;RPR=37;RUN=1;SAF=37;SAP=83.3548;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:69:28,8:28:1088:8:317:-17.6496,0,-86.9936 0|1:83:11,16:11:423:16:620:-47.5708,0,-29.909 0|1:29:2,12:2:79:12:464:-37.4242,0,-2.88888 0|1:12:1,1:1:39:1:40:-2.98714,0,-2.90539 dDocent_Contig_12757 32 . G A 489.245 . AB=0.387755;ABP=8.37251;AC=3;AF=0.375;AN=8;AO=21;CIGAR=1X;DP=76;DPB=76;DPRA=0;EPP=48.6112;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=833;QR=2205;RO=55;RPL=0;RPP=48.6112;RPPR=122.441;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:11,5:11:438:5:202:-13.7456,0,-34.9548 0/1:26:16,10:16:645:10:392:-27.8086,0,-50.5575 0/0:27:25,2:25:1005:2:78:0,-0.725033,-83.342 0/1:7:3,4:3:117:4:161:-12.7681,0,-8.80208 dDocent_Contig_12758 12 . C T 2038.41 . AB=0.690722;ABP=33.6572;AC=3;AF=0.375;AN=8;AO=67;CIGAR=1X2M1X;DP=116;DPB=116;DPRA=1.70175;EPP=148.499;EPPR=107.241;GTI=0;LEN=1;MEANALT=1.33333;MQM=59.1343;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.970149;PAIREDR=0.604167;PAO=0;PQA=0;PQR=0;PRO=0;QA=2657;QR=1898;RO=48;RPL=0;RPP=148.499;RPPR=107.241;RPR=67;RUN=1;SAF=67;SAP=148.499;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:29:6,23:6:243:23:914:-72.2736,0,-13.5183 0|1:42:7,34:7:280:34:1347:-108.793,0,-12.8653 0|1:26:16,10:16:617:10:396:-28.1722,0,-48.0358 0|0:19:19,0:19:758:0:0:0,-5.71957,-68.5424 dDocent_Contig_12759 139 . A C 387.463 . AB=0.521739;ABP=3.10471;AC=3;AF=0.5;AN=6;AO=16;CIGAR=1X;DP=58;DPB=58;DPRA=0;EPP=37.7539;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=616;QR=1600;RO=42;RPL=0;RPP=37.7539;RPPR=94.2121;RPR=16;RUN=1;SAF=0;SAP=37.7539;SAR=16;SRF=0;SRP=94.2121;SRR=42;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 0/1:23:11,12:11:430:12:475:-36.1737,0,-32.1275 0/0:34:31,3:31:1170:3:100:0,-0.910822,-96.2393 1/1:1:0,1:0:0:1:41:-4.09457,-0.30103,0 dDocent_Contig_12760 126 . A C 183.172 . AB=0.344828;ABP=9.07545;AC=3;AF=0.375;AN=8;AO=10;CIGAR=1X;DP=36;DPB=36;DPRA=1.38095;EPP=24.725;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=349;QR=906;RO=26;RPL=0;RPP=24.725;RPPR=59.4686;RPR=10;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=59.4686;SRR=26;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:8,3:8:280:3:104:-6.39176,0,-22.2287 0/1:13:9,4:9:312:4:139:-8.9393,0,-24.5028 0/0:7:7,0:7:245:0:0:0,-2.10721,-22.3912 0/1:5:2,3:2:69:3:106:-8.38401,0,-5.04751 dDocent_Contig_12761 119 . T C 122.738 . AB=0.216667;ABP=44.8473;AC=2;AF=0.25;AN=8;AO=14;CIGAR=1X;DP=106;DPB=106;DPRA=35;EPP=33.4109;EPPR=202.786;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=397;QR=3052;RO=92;RPL=0;RPP=33.4109;RPPR=202.786;RPR=14;RUN=1;SAF=0;SAP=33.4109;SAR=14;SRF=0;SRP=202.786;SRR=92;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:45:44,1:44:1435:1:29:0,-10.6467,-126.531 0/1:53:42,11:42:1408:11:298:-11.1307,0,-111.054 0/0:1:1,0:1:35:0:0:0,-0.30103,-3.49863 0/1:7:5,2:5:174:2:70:-4.54019,0,-13.8947 dDocent_Contig_12763 43 . T C 293.582 . AB=0.264151;ABP=28.6173;AC=4;AF=0.5;AN=8;AO=14;CIGAR=1X;DP=53;DPB=53;DPRA=0;EPP=33.4109;EPPR=71.2168;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.948718;PAO=0;PQA=0;PQR=0;PRO=0;QA=565;QR=1481;RO=39;RPL=0;RPP=33.4109;RPPR=87.6977;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=37;SRP=71.2168;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:18,2:18:675:2:82:-1.75908,0,-55.06 0/1:17:14,3:14:540:3:122:-6.25498,0,-43.8257 0/1:5:3,2:3:111:2:82:-6.27453,0,-8.84834 0/1:11:4,7:4:155:7:279:-22.1683,0,-11.0139 dDocent_Contig_12764 30 . T C 418.581 . AB=0.125;ABP=22.5536;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X2M1X;DP=59;DPB=59;DPRA=4;EPP=7.35324;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=72;QR=1562;RO=41;RPL=0;RPP=7.35324;RPPR=92.0407;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:27:18,0,9:18:692:0,9:0,344:-23.1845,-28.6031,-85.4147,0,-57.1942,-54.485 0|1:16:14,2,0:14:526:2,0:72,0:-2.01876,0,-42.8653,-6.23318,-43.4674,-49.3388 0|0:12:5,0,7:5:196:0,7:0,280:-21.9594,-23.4646,-39.5797,0,-16.5101,-14.4029 0|0:4:4,0,0:4:148:0,0:0,0:0,-1.20412,-13.681,-1.20412,-13.681,-13.681 dDocent_Contig_12765 92 . A C 66.6529 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=2X3M9X2I2X;DP=3;DPB=3.375;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=24;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=112;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. 1|1:3:0,3:0:0:3:112:-6.66475,-0.90309,0 .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. dDocent_Contig_12766 48 . C T 89.9604 . AB=0.193548;ABP=28.2974;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=46;DPB=46;DPRA=1.03333;EPP=16.0391;EPPR=81.4005;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=234;QR=1611;RO=40;RPL=6;RPP=16.0391;RPPR=81.4005;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:15:15,0:15:610:0:0:0,-4.51545,-55.2372 0/1:27:22,5:22:882:5:194:-9.70457,0,-71.562 0/1:4:3,1:3:119:1:40:-2.79156,0,-9.89089 ./.:.:.:.:.:.:.:. dDocent_Contig_12769 166 . C T 85.9308 . AB=0.277778;ABP=10.7311;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=63;DPB=63;DPRA=0.8;EPP=13.8677;EPPR=128.956;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=169;QR=2138;RO=58;RPL=5;RPP=13.8677;RPPR=128.956;RPR=0;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=128.956;SRR=58;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:13,5:13:478:5:169:-10.1159,0,-37.9216 0/0:41:41,0:41:1498:0:0:0,-12.3422,-135.047 0/0:4:4,0:4:162:0:0:0,-1.20412,-14.9667 ./.:.:.:.:.:.:.:. dDocent_Contig_12771 10 . T C 256.709 . AB=0.282051;ABP=19.1015;AC=2;AF=0.25;AN=8;AO=11;CIGAR=1X;DP=80;DPB=80;DPRA=0.95122;EPP=26.8965;EPPR=152.842;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.753623;PAO=0;PQA=0;PQR=0;PRO=0;QA=445;QR=2589;RO=69;RPL=0;RPP=26.8965;RPPR=152.842;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=69;SRP=152.842;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:12,3:12:437:3:121:-6.76475,0,-35.1477 0/1:24:16,8:16:611:8:324:-22.3041,0,-48.0996 0/0:32:32,0:32:1190:0:0:0,-9.63296,-107.385 0/0:9:9,0:9:351:0:0:0,-2.70927,-31.9496 dDocent_Contig_12772 146 . A G 97.3977 . AB=0.363636;ABP=4.78696;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=21;DPB=21;DPRA=2.2;EPP=11.6962;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=161;QR=662;RO=17;RPL=0;RPP=11.6962;RPPR=39.9253;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=39.9253;SRR=17;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:4:4,0:4:152:0:0:0,-1.20412,-14.0477 0/1:11:7,4:7:279:4:161:-11.5636,0,-22.17 0/0:6:6,0:6:231:0:0:0,-1.80618,-21.1573 ./.:.:.:.:.:.:.:. dDocent_Contig_12773 7 . T A 627.051 . AB=0.5;ABP=3.0103;AC=4;AF=0.5;AN=8;AO=25;CIGAR=1X;DP=50;DPB=50;DPRA=0;EPP=57.2971;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=52.48;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.52;PAIREDR=0.8;PAO=0;PQA=0;PQR=0;PRO=0;QA=946;QR=955;RO=25;RPL=0;RPP=57.2971;RPPR=57.2971;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:6,14:6:230:14:527:-40.7689,0,-15.0462 0/1:5:1,4:1:37:4:153:-12.4221,0,-2.19268 0/1:9:6,3:6:232:3:112:-7.54602,0,-18.5397 0/1:16:12,4:12:456:4:154:-9.30146,0,-36.5723 dDocent_Contig_12776 7 . T A 592.679 . AB=0.392157;ABP=8.16222;AC=5;AF=0.625;AN=8;AO=23;CIGAR=1X;DP=55;DPB=55;DPRA=0;EPP=52.9542;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=877;QR=1177;RO=31;RPL=0;RPP=52.9542;RPPR=70.3259;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:15,6:15:573:6:232:-14.9274,0,-45.5891 0/1:26:14,12:14:527:12:466:-34.4653,0,-39.943 1/1:4:0,3:0:0:3:101:-9.07367,-0.90309,0 0/1:4:2,2:2:77:2:78:-6.19935,0,-6.10502 dDocent_Contig_12777 72 . A T 226.502 . AB=0.615385;ABP=4.51363;AC=1;AF=0.25;AN=4;AO=8;CIGAR=1X;DP=19;DPB=19;DPRA=2.16667;EPP=20.3821;EPPR=26.8965;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=310;QR=395;RO=11;RPL=8;RPP=20.3821;RPPR=26.8965;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=11;SRP=26.8965;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:5,8:5:180:8:310:-24.3491,0,-12.6369 ./.:.:.:.:.:.:.:. 0/0:6:6,0:6:215:0:0:0,-1.80618,-19.6974 ./.:.:.:.:.:.:.:. dDocent_Contig_12779 9 . G C 56.8918 . AB=0.142857;ABP=41.7866;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=86;DPB=86;DPRA=2.05882;EPP=13.8677;EPPR=178.9;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.864198;PAO=0;PQA=0;PQR=0;PRO=0;QA=195;QR=3100;RO=81;RPL=0;RPP=13.8677;RPPR=178.9;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=81;SRP=178.9;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:22:22,0:22:848:0:0:0,-6.62266,-76.6428 0/0:18:18,0:18:688:0:0:0,-5.41854,-62.2535 0/1:35:30,5:30:1139:5:195:-7.38815,0,-92.2752 0/0:11:11,0:11:425:0:0:0,-3.31133,-38.6044 dDocent_Contig_12780 7 . T C 287.748 . AB=0.326087;ABP=15.095;AC=4;AF=0.5;AN=8;AO=15;CIGAR=7I1M1X3M1X;DP=46;DPB=63.5;DPRA=0;EPP=35.5824;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=540;QR=1159;RO=31;RPL=0;RPP=35.5824;RPPR=70.3259;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:22:14,8:14:523:8:286:-19.462,0,-40.7904 0|1:9:7,2:7:264:2:72:-4.12745,0,-21.4114 0|1:8:5,3:5:183:3:110:-7.85276,0,-14.4179 0|1:7:5,2:5:189:2:72:-4.72951,0,-15.2687 dDocent_Contig_12782 12 . T G 131.531 . AB=0.212121;ABP=26.7649;AC=2;AF=0.25;AN=8;AO=8;CIGAR=1X;DP=59;DPB=59;DPRA=4.58333;EPP=20.3821;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.72549;PAO=0;PQA=0;PQR=0;PRO=0;QA=309;QR=1765;RO=51;RPL=0;RPP=20.3821;RPPR=113.755;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:9,5:9:326:5:204:-14.5296,0,-25.4726 0/0:4:4,0:4:130:0:0:0,-1.20412,-12.0177 0/0:22:21,1:21:724:1:31:0,-3.52321,-62.37 0/1:19:17,2:17:585:2:74:-1.30445,0,-47.2473 dDocent_Contig_12783 106 . N G 91.7958 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=3;CIGAR=2X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=33.3333;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=103;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. 1|1:2:0,2:0:0:2:68:-5.92213,-0.60206,0 1|1:1:0,1:0:0:1:35:-2.95456,-0.30103,0 dDocent_Contig_12784 32 . A G 279.276 . AB=0.315789;ABP=14.2105;AC=2;AF=0.25;AN=8;AO=12;CIGAR=1X;DP=58;DPB=58;DPRA=1.9;EPP=29.068;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.833333;PAIREDR=0.891304;PAO=0;PQA=0;PQR=0;PRO=0;QA=467;QR=1828;RO=46;RPL=0;RPP=29.068;RPPR=102.898;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:18,8:18:708:8:311:-20.5214,0,-56.2195 0/1:12:8,4:8:313:4:156:-10.8041,0,-24.915 0/0:6:6,0:6:239:0:0:0,-1.80618,-21.8844 0/0:14:14,0:14:568:0:0:0,-4.21442,-51.4617 dDocent_Contig_12785 95 . G T 777.839 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=22;CIGAR=1X1M8X;DP=23;DPB=23;DPRA=0;EPP=50.7827;EPPR=0;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=851;QR=0;RO=0;RPL=0;RPP=50.7827;RPPR=0;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:9:0,9:0:0:9:346:-31.4994,-2.70927,0 1|1:5:0,5:0:0:5:195:-17.9242,-1.50515,0 1|1:9:0,8:0:0:8:310:-27.8832,-2.40824,0 .:.:.:.:.:.:.:. dDocent_Contig_12786 24 . C T 236.641 . AB=0.15;ABP=24.2907;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1M3D4M7I1M2X4M;DP=62;DPB=62.8;DPRA=0;EPP=9.52472;EPPR=98.5551;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=115;QR=1717;RO=44;RPL=0;RPP=9.52472;RPPR=98.5551;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:18:14,0,4,0:14:547:0,4,0:0,159,0:-9.27379,-13.4882,-58.4518,0,-45.3592,-44.1551,-13.4882,-58.4518,-45.3592,-58.4518 0|1:20:12,3,2,2:12:475:3,2,2:115,76,78:-5.82617,0,-38.2005,-3.20719,-32.8727,-41.7075,-3.06702,-32.7341,-35.94,-41.569 0|0:10:9,0,1,0:9:346:0,1,0:0,37,0:-0.687529,-3.3968,-31.8138,0,-28.7882,-28.4872,-3.3968,-31.8138,-28.7882,-31.8138 0|0:14:9,0,5,0:9:349:0,5,0:0,198,0:-13.9566,-16.6659,-45.3342,0,-29.0606,-27.5555,-16.6659,-45.3342,-29.0606,-45.3342 dDocent_Contig_12787 53 . A C 47.8099 . AB=0.142857;ABP=41.7866;AC=2;AF=0.25;AN=8;AO=5;CIGAR=1X;DP=67;DPB=67;DPRA=1.09375;EPP=13.8677;EPPR=137.642;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.596774;PAO=0;PQA=0;PQR=0;PRO=0;QA=199;QR=2442;RO=62;RPL=5;RPP=13.8677;RPPR=137.642;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:14,2:14:540:2:77:-2.49235,0,-44.117 0/0:6:6,0:6:236:0:0:0,-1.80618,-21.6123 0/0:26:26,0:26:1035:0:0:0,-7.82678,-93.4447 0/1:19:16,3:16:631:3:122:-5.65292,0,-51.4041 dDocent_Contig_12789 166 . T G 80.8115 . AB=0;ABP=0;AC=2;AF=0.25;AN=8;AO=2;CIGAR=1X;DP=18;DPB=18;DPRA=0.375;EPP=7.35324;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=638;RO=16;RPL=2;RPP=7.35324;RPPR=37.7539;RPR=0;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=37.7539;SRR=16;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5,0:5:198:0:0:0,-1.50515,-18.1976 0/0:3:3,0:3:121:0:0:0,-0.90309,-11.2802 0/0:8:8,0:8:319:0:0:0,-2.40824,-29.0769 1/1:2:0,2:0:0:2:82:-7.77968,-0.60206,0 dDocent_Contig_12790 57 . C G 137.613 . AB=0;ABP=0;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1X;DP=55;DPB=55;DPRA=0.156863;EPP=11.6962;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.69407e-21;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=147;QR=2010;RO=51;RPL=4;RPP=11.6962;RPPR=113.755;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:45:45,0:45:1770:0:0:0,-13.5463,-159.517 0/0:6:6,0:6:240:0:0:0,-1.80618,-21.9751 1/1:4:0,4:0:0:4:147:-13.5851,-1.20412,0 ./.:.:.:.:.:.:.:. dDocent_Contig_12791 16 . G A 44.9972 . AB=0.5;ABP=3.0103;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X;DP=47;DPB=47;DPRA=0.27907;EPP=7.35324;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=78;QR=1813;RO=45;RPL=0;RPP=7.35324;RPPR=100.727;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:18:18,0:18:726:0:0:0,-5.41854,-65.6646 0/0:18:18,0:18:727:0:0:0,-5.41854,-65.7542 0/0:7:7,0:7:282:0:0:0,-2.10721,-25.7521 0/1:4:2,2:2:78:2:78:-6.19866,0,-6.19918 dDocent_Contig_12792 19 . A G 141.808 . AB=0.625;ABP=4.09604;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=39;DPB=39;DPRA=0.774194;EPP=13.8677;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.823529;PAO=0;PQA=0;PQR=0;PRO=0;QA=199;QR=1340;RO=34;RPL=0;RPP=13.8677;RPPR=76.8404;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:18:18,0:18:716:0:0:0,-5.41854,-64.7676 0/0:12:12,0:12:466:0:0:0,-3.61236,-42.2873 0/0:1:1,0:1:40:0:0:0,-0.30103,-3.99568 0/1:8:3,5:3:118:5:199:-15.8792,0,-8.59334 dDocent_Contig_12793 182 . C A 269.254 . AB=0.26;ABP=28.0257;AC=4;AF=0.5;AN=8;AO=13;CIGAR=1X;DP=50;DPB=50;DPRA=0;EPP=31.2394;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=531;QR=1458;RO=37;RPL=13;RPP=31.2394;RPPR=83.3548;RPR=0;RUN=1;SAF=0;SAP=31.2394;SAR=13;SRF=0;SRP=83.3548;SRR=37;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:21,4:21:855:4:164:-7.62415,0,-69.734 0/1:16:12,4:12:444:4:162:-10.1503,0,-35.4686 0/1:4:1,3:1:41:3:123:-10.2607,0,-2.89045 0/1:5:3,2:3:118:2:82:-6.27453,0,-9.49643 dDocent_Contig_12794 57 . A G 123.421 . AB=0.285714;ABP=11.386;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X;DP=91;DPB=91;DPRA=0.88;EPP=22.5536;EPPR=181.071;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.97561;PAO=0;PQA=0;PQR=0;PRO=0;QA=335;QR=2952;RO=82;RPL=9;RPP=22.5536;RPPR=181.071;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=82;SRP=181.071;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:15,6:15:558:6:219:-13.7395,0,-44.2362 0/0:25:25,0:25:930:0:0:0,-7.52575,-84.0149 0/0:14:13,1:13:441:1:39:0,-0.317855,-36.1122 0/0:31:29,2:29:1023:2:77:0,-2.02279,-85.0611 dDocent_Contig_12795 209 . N G 131.003 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=7;CIGAR=1X;DP=7;DPB=7;DPRA=0;EPP=18.2106;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=21.1429;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=273;QR=0;RO=0;RPL=7;RPP=18.2106;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:4:0,4:0:0:4:156:-2.58917,-1.20412,0 1/1:3:0,3:0:0:3:117:-10.2091,-0.90309,0 dDocent_Contig_12796 96 . A G 165.306 . AB=0.346154;ABP=8.35546;AC=2;AF=0.25;AN=8;AO=10;CIGAR=1X;DP=49;DPB=49;DPRA=16;EPP=24.725;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=334;QR=1285;RO=39;RPL=10;RPP=24.725;RPPR=87.6977;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:14,3:14:465:3:103:-4.49246,0,-37.0506 0/0:1:1,0:1:33:0:0:0,-0.30103,-3.29913 0/0:22:21,1:21:684:1:33:0,-3.32352,-58.5673 0/1:9:3,6:3:103:6:198:-15.4352,0,-6.9007 dDocent_Contig_12797 22 . C T 226.945 . AB=0.384615;ABP=6.01695;AC=1;AF=0.125;AN=8;AO=10;CIGAR=1X;DP=78;DPB=78;DPRA=1.5;EPP=24.725;EPPR=150.67;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=351;QR=2664;RO=68;RPL=0;RPP=24.725;RPPR=150.67;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=68;SRP=150.67;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:16,10:16:627:10:351:-24.0924,0,-48.9347 0/0:17:17,0:17:667:0:0:0,-5.11751,-60.3629 0/0:27:27,0:27:1061:0:0:0,-8.12781,-95.7887 0/0:8:8,0:8:309:0:0:0,-2.40824,-28.1698 dDocent_Contig_12798 64 . C A 448.218 . AB=0.207207;ABP=85.6632;AC=3;AF=0.375;AN=8;AO=23;CIGAR=1X;DP=119;DPB=119;DPRA=4.625;EPP=52.9542;EPPR=211.472;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=917;QR=3786;RO=96;RPL=23;RPP=52.9542;RPPR=211.472;RPR=0;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=96;SRP=211.472;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:33:28,5:28:1111:5:204:-8.81004,0,-90.3436 0/1:33:22,11:22:866:11:439:-29.9312,0,-68.3082 0/1:45:38,7:38:1484:7:274:-11.4785,0,-120.262 0/0:8:8,0:8:325:0:0:0,-2.40824,-29.6194 dDocent_Contig_12799 161 . T C 58.2908 . AB=0.166667;ABP=31.9633;AC=3;AF=0.5;AN=6;AO=5;CIGAR=1X;DP=30;DPB=30;DPRA=0;EPP=13.8677;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=52;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=200;QR=990;RO=25;RPL=5;RPP=13.8677;RPPR=57.2971;RPR=0;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=57.2971;SRR=25;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:12,3:12:480:3:118:-6.48675,0,-39.035 0/1:12:11,1:11:428:1:41:-0.133758,0,-35.2586 0/1:3:2,1:2:82:1:41:-2.84303,0,-6.87659 ./.:.:.:.:.:.:.:. dDocent_Contig_12800 10 . C T 372.011 . AB=0.142857;ABP=26.2761;AC=2;AF=0.25;AN=8;AO=3;CIGAR=1X3M;DP=61;DPB=61;DPRA=0;EPP=9.52472;EPPR=77.6676;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=0.333333;PAIREDR=0.52381;PAO=0;PQA=0;PQR=0;PRO=0;QA=117;QR=1646;RO=42;RPL=0;RPP=9.52472;RPPR=94.2121;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=40;SRP=77.6676;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:9:8,0,1,0:8:321:0,1,0:0,40,0:-1.28641,-3.69465,-30.1446,0,-26.8497,-26.5486,-3.69465,-30.1446,-26.8497,-30.1446 0|1:27:16,11,0,0:16:608:11,0,0:429,0,0:-30.8355,0,-46.9167,-35.652,-50.2281,-85.4945,-35.652,-50.2281,-85.4945,-85.4945 0|0:12:7,0,2,3:7:282:0,2,3:0,77,122:-7.96891,-10.0761,-33.3221,-3.76232,-27.0028,-26.4008,0,-23.2569,-16.9385,-22.3538 0|0:13:11,0,0,2:11:435:0,0,2:0,0,81:-3.77234,-7.08367,-42.8744,-7.08367,-42.8744,-42.8744,0,-36.1938,-36.1938,-35.5918 dDocent_Contig_12801 9 . G C 459.195 . AB=0.367347;ABP=10.4997;AC=4;AF=0.5;AN=8;AO=18;CIGAR=2X3M1X;DP=49;DPB=49;DPRA=0;EPP=42.0968;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.722222;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=711;QR=909;RO=23;RPL=0;RPP=42.0968;RPPR=52.9542;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:7:3,4,0:3:118:4,0:159,0:-12.5851,0,-8.89568,-13.4882,-10.0998,-23.1933 1|0:26:8,10,8:8:313:10,8:396,318:-30.639,-0.454505,-23.1749,-6.86452,0,-30.1879 0|1:10:7,3,0:7:279:3,0:116,0:-7.8071,0,-22.4714,-9.91431,-23.3745,-32.8989 0|1:6:5,1,0:5:199:1,0:40,0:-2.1895,0,-16.4828,-3.69465,-16.7838,-20.0792 dDocent_Contig_12802 108 . T C 235.809 . AB=0.5;ABP=3.0103;AC=1;AF=0.166667;AN=6;AO=12;CIGAR=1X;DP=32;DPB=32;DPRA=6;EPP=29.068;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=356;QR=661;RO=20;RPL=0;RPP=29.068;RPPR=46.4397;RPR=12;RUN=1;SAF=0;SAP=29.068;SAR=12;SRF=0;SRP=46.4397;SRR=20;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:12,12:12:396:12:356:-25.103,0,-28.7335 0/0:7:7,0:7:230:0:0:0,-2.10721,-21.0226 ./.:.:.:.:.:.:.:. 0/0:1:1,0:1:35:0:0:0,-0.30103,-3.49863 dDocent_Contig_12803 44 . C A 92.3766 . AB=0.212121;ABP=26.7649;AC=2;AF=0.25;AN=8;AO=7;CIGAR=1X;DP=62;DPB=62;DPRA=1.13793;EPP=18.2106;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.142857;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=243;QR=2166;RO=55;RPL=0;RPP=18.2106;RPPR=122.441;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:18,5:18:726:5:165:-8.24268,0,-58.7417 0/0:18:18,0:18:721:0:0:0,-5.41854,-65.2148 0/0:11:11,0:11:422:0:0:0,-3.31133,-38.3266 0/1:10:8,2:8:297:2:78:-4.39248,0,-24.0649 dDocent_Contig_12804 148 . G T 64.7713 . AB=0.5;ABP=3.0103;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=22;DPB=22;DPRA=1.125;EPP=9.52472;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=107;QR=641;RO=19;RPL=0;RPP=9.52472;RPPR=44.2683;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=44.2683;SRR=19;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5,0:5:174:0:0:0,-1.50515,-16.002 0/1:6:3,3:3:103:3:107:-8.17599,0,-7.80379 0/0:7:7,0:7:227:0:0:0,-2.10721,-20.7486 0/0:4:4,0:4:137:0:0:0,-1.20412,-12.6682 dDocent_Contig_12805 30 . T C 49.4934 . AB=0.1875;ABP=16.582;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=54;DPB=54;DPRA=1.26316;EPP=9.52472;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.823529;PAO=0;PQA=0;PQR=0;PRO=0;QA=123;QR=2052;RO=51;RPL=0;RPP=9.52472;RPPR=113.755;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:15:15,0:15:603:0:0:0,-4.51545,-54.6089 0/0:11:11,0:11:449:0:0:0,-3.31133,-40.7659 0/1:16:13,3:13:514:3:123:-6.64831,0,-41.7886 0/0:12:12,0:12:486:0:0:0,-3.61236,-44.0913 dDocent_Contig_12807 20 . C T 69.7164 . AB=0.185185;ABP=26.2531;AC=3;AF=0.375;AN=8;AO=5;CIGAR=1X;DP=36;DPB=36;DPRA=1;EPP=13.8677;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=203;QR=1243;RO=31;RPL=0;RPP=13.8677;RPPR=70.3259;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:10,1:10:406:1:41:-0.783237,0,-33.5889 0/1:9:6,3:6:236:3:121:-8.57093,0,-18.8996 0/1:7:6,1:6:244:1:41:-1.98736,0,-20.2316 0/0:9:9,0:9:357:0:0:0,-2.70927,-32.4915 dDocent_Contig_12809 23 . C G 308.75 . AB=0.478261;ABP=3.10471;AC=1;AF=0.166667;AN=6;AO=11;CIGAR=1X;DP=34;DPB=34;DPRA=4.18182;EPP=26.8965;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=433;QR=933;RO=23;RPL=0;RPP=26.8965;RPPR=52.9542;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:12,11:12:486:11:433:-32.3971,0,-37.1679 0/0:10:10,0:10:406:0:0:0,-3.0103,-36.9 0/0:1:1,0:1:41:0:0:0,-0.30103,-4.09457 ./.:.:.:.:.:.:.:. dDocent_Contig_12810 58 . G A 164.151 . AB=0.242424;ABP=22.0271;AC=2;AF=0.25;AN=8;AO=8;CIGAR=1X3M1X;DP=48;DPB=48;DPRA=1.65;EPP=20.3821;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.918919;PAO=0;PQA=0;PQR=0;PRO=0;QA=274;QR=1251;RO=37;RPL=8;RPP=20.3821;RPPR=83.3548;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:9:8,1,0:8:267:1,0:33,0:-0.589865,0,-21.6461,-2.9981,-21.9472,-24.6149 0|0:10:10,0,0:10:337:0,0:0,0:0,-3.0103,-30.656,-3.0103,-30.656,-30.656 0|1:24:17,7,0:17:577:7,0:241,0:-14.8017,0,-45.0274,-19.9192,-47.1346,-66.7111 0|0:5:2,0,2:2:70:0,2:0,69:-5.00699,-5.60905,-11.3072,0,-5.70212,-5.10006 dDocent_Contig_12811 98 . N A 532.177 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=16;CIGAR=1X;DP=16;DPB=16;DPRA=0;EPP=37.7539;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=1.69407e-21;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=573;QR=0;RO=0;RPL=16;RPP=37.7539;RPPR=0;RPR=0;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:13:0,13:0:0:13:467:-42.3692,-3.91339,0 1/1:2:0,2:0:0:2:70:-6.64733,-0.60206,0 1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0 ./.:.:.:.:.:.:.:. dDocent_Contig_12812 10 . C A 1049.02 . AB=0.234146;ABP=128.86;AC=3;AF=0.375;AN=8;AO=48;CIGAR=1X;DP=295;DPB=295;DPRA=0.759259;EPP=107.241;EPPR=526.335;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=0.995851;PAO=0;PQA=0;PQR=0;PRO=0;QA=1896;QR=9696;RO=241;RPL=0;RPP=107.241;RPPR=526.335;RPR=48;RUN=1;SAF=48;SAP=107.241;SAR=0;SRF=241;SRP=526.335;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:90:89,0:89:3558:0:0:0,-26.7917,-319.868 0/1:82:60,21:60:2423:21:819:-49.2534,0,-193.439 0/1:59:36,21:36:1441:21:837:-58.1059,0,-112.395 0/1:64:56,6:56:2274:6:240:-2.92749,0,-185.765 dDocent_Contig_12813 8 . A G 121.666 . AB=0.136842;ABP=111.835;AC=3;AF=0.375;AN=8;AO=17;CIGAR=1X;DP=158;DPB=158;DPRA=0;EPP=39.9253;EPPR=309.188;GTI=0;LEN=1;MEANALT=1;MQM=59.8235;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=655;QR=5447;RO=141;RPL=0;RPP=39.9253;RPPR=309.188;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=141;SRP=309.188;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:63:59,4:59:2272:4:155:0,-4.63945,-190.372 0/1:57:49,8:49:1896:8:306:-10.7401,0,-153.724 0/1:33:29,4:29:1123:4:155:-4.39063,0,-91.4371 0/1:5:4,1:4:156:1:39:-2.39141,0,-12.9121 dDocent_Contig_12814 163 . A G 414.136 . AB=0.736842;ABP=12.2676;AC=1;AF=0.166667;AN=6;AO=14;CIGAR=1X;DP=26;DPB=26;DPRA=5.42857;EPP=33.4109;EPPR=29.068;GTI=0;LEN=1;MEANALT=1;MQM=44;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=562;QR=484;RO=12;RPL=0;RPP=33.4109;RPPR=29.068;RPR=14;RUN=1;SAF=0;SAP=33.4109;SAR=14;SRF=0;SRP=29.068;SRR=12;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:2:2,0:2:78:0:0:0,-0.60206,-7.4033 0/1:19:5,14:5:203:14:562:-43.2371,0,-12.9335 0/0:5:5,0:5:203:0:0:0,-1.50515,-18.6531 ./.:.:.:.:.:.:.:. dDocent_Contig_12815 61 . C A 41.0361 . AB=0;ABP=0;AC=3;AF=0.375;AN=8;AO=3;CIGAR=1X3M;DP=42;DPB=42;DPRA=0.433333;EPP=9.52472;EPPR=58.3499;GTI=0;LEN=1;MEANALT=1.5;MQM=24;MQMR=56.4545;NS=4;NUMALT=2;ODDS=0;PAIRED=0.333333;PAIREDR=0.939394;PAO=0;PQA=0;PQR=0;PRO=0;QA=72;QR=1181;RO=33;RPL=3;RPP=9.52472;RPPR=74.6689;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=31;SRP=58.3499;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:11:9,0,1:9:308:0,1:0,26:0,-2.70927,-27.8645,-0.860742,-26.1037,-25.8026 0|1:14:10,3,0:10:361:3,0:114,0:-0.183275,0,-28.8118,-3.19358,-29.7149,-32.8164 0|0:15:14,1,0:14:512:1,0:37,0:0,-1.76687,-38.4179,-4.21442,-38.7189,-40.8883 1|1:2:0,0,2:0:0:0,2:0,46:-3.80017,-3.80017,-3.80017,-0.60206,-0.60206,0 dDocent_Contig_12819 107 . N T 396.16 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=13;CIGAR=1X;DP=13;DPB=13;DPRA=0;EPP=31.2394;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=424;QR=0;RO=0;RPL=0;RPP=31.2394;RPPR=0;RPR=13;RUN=1;SAF=0;SAP=31.2394;SAR=13;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:6:0,6:0:0:6:187:-17.1376,-1.80618,0 1/1:5:0,5:0:0:5:169:-15.5429,-1.50515,0 1/1:2:0,2:0:0:2:68:-6.45788,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_12820 11 . T C 619.375 . AB=0.347826;ABP=12.2627;AC=3;AF=0.5;AN=6;AO=21;CIGAR=1X;DP=68;DPB=68;DPRA=1.5;EPP=48.6112;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=851;QR=1886;RO=47;RPL=0;RPP=48.6112;RPPR=105.07;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:46:30,16:30:1206:16:646:-44.6253,0,-94.9661 0/0:17:17,0:17:680:0:0:0,-5.11751,-61.5288 ./.:.:.:.:.:.:.:. 1/1:5:0,5:0:0:5:205:-18.835,-1.50515,0 dDocent_Contig_12821 139 . G A 30.3122 . AB=0.285714;ABP=5.80219;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X;DP=89;DPB=89;DPRA=0.256098;EPP=7.35324;EPPR=191.928;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=72;QR=2941;RO=87;RPL=0;RPP=7.35324;RPPR=191.928;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=191.928;SRR=87;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:34:34,0:34:1172:0:0:0,-10.235,-105.784 0/0:46:46,0:46:1527:0:0:0,-13.8474,-137.715 0/1:7:5,2:5:173:2:72:-4.72951,0,-13.803 0/0:2:2,0:2:69:0:0:0,-0.60206,-6.55266 dDocent_Contig_12823 12 . A G 88.619 . AB=0.181818;ABP=32.0291;AC=2;AF=0.25;AN=8;AO=6;CIGAR=1X;DP=81;DPB=81;DPRA=0.6875;EPP=16.0391;EPPR=165.871;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.96;PAO=0;PQA=0;PQR=0;PRO=0;QA=233;QR=2996;RO=75;RPL=0;RPP=16.0391;RPPR=165.871;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=75;SRP=165.871;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:16,2:16:641:2:70:-1.22597,0,-52.6064 0/0:24:24,0:24:960:0:0:0,-7.22472,-86.7032 0/0:24:24,0:24:955:0:0:0,-7.22472,-86.2511 0/1:15:11,4:11:440:4:163:-10.543,0,-35.4403 dDocent_Contig_12825 37 . C T 87.7526 . AB=0.263158;ABP=12.2676;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=24;DPB=24;DPRA=1.9;EPP=13.8677;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=186;QR=743;RO=19;RPL=0;RPP=13.8677;RPPR=44.2683;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:8,1:8:310:1:39:-1.18729,0,-25.5509 0/1:10:6,4:6:232:4:147:-10.5774,0,-18.2367 ./.:.:.:.:.:.:.:. 0/0:5:5,0:5:201:0:0:0,-1.50515,-18.4705 dDocent_Contig_12826 71 . G A 113.506 . AB=0.185185;ABP=26.2531;AC=4;AF=0.5;AN=8;AO=6;CIGAR=1X;DP=38;DPB=38;DPRA=0.933333;EPP=16.0391;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=237;QR=1236;RO=32;RPL=6;RPP=16.0391;RPPR=72.4974;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:10:10,0:10:393:0:0:0,-3.0103,-35.7277 0/1:19:15,4:15:571:4:155:-8.60369,0,-45.9994 0/1:8:7,1:7:272:1:41:-1.68633,0,-22.4356 1/1:1:0,1:0:0:1:41:-4.09457,-0.30103,0 dDocent_Contig_12827 6 . C T 145.672 . AB=0.333333;ABP=6.62942;AC=4;AF=0.5;AN=8;AO=7;CIGAR=1X;DP=30;DPB=30;DPRA=0.435897;EPP=18.2106;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=38;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=256;QR=896;RO=23;RPL=0;RPP=18.2106;RPPR=52.9542;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:13:13,0:13:507:0:0:0,-3.91339,-45.9795 0/1:11:8,3:8:311:3:111:-6.45392,0,-25.043 0/1:4:2,2:2:78:2:74:-5.4223,0,-6.19935 1/1:2:0,2:0:0:2:71:-6.08858,-0.60206,0 dDocent_Contig_12830 9 . G A 182.631 . AB=0.25641;ABP=23.1103;AC=3;AF=0.375;AN=8;AO=10;CIGAR=1X;DP=42;DPB=42;DPRA=4.33333;EPP=24.725;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=56.6;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.5;PAIREDR=0.9375;PAO=0;PQA=0;PQR=0;PRO=0;QA=382;QR=1223;RO=32;RPL=0;RPP=24.725;RPPR=72.4974;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:5:2,3:2:78:3:111:-8.84123,0,-5.89832 0/1:23:18,5:18:678:5:194:-10.8208,0,-54.4225 0/1:11:9,2:9:350:2:77:-3.99781,0,-28.55 0/0:3:3,0:3:117:0:0:0,-0.90309,-10.9104 dDocent_Contig_12831 25 . G A 75.3706 . AB=0.206897;ABP=24.6501;AC=3;AF=0.375;AN=8;AO=6;CIGAR=1X;DP=33;DPB=33;DPRA=2.41667;EPP=16.0391;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=227;QR=1074;RO=27;RPL=0;RPP=16.0391;RPPR=61.6401;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:15,2:15:594:2:75:-2.00208,0,-48.682 0/1:9:6,3:6:240:3:112:-7.73681,0,-19.2662 0/1:3:2,1:2:79:1:40:-3.09259,0,-6.59454 0/0:4:4,0:4:161:0:0:0,-1.20412,-14.8749 dDocent_Contig_12833 111 . G A 144.254 . AB=0.35;ABP=6.91895;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=36;DPB=36;DPRA=3.75;EPP=18.2106;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=34.1034;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.551724;PAO=0;PQA=0;PQR=0;PRO=0;QA=239;QR=968;RO=29;RPL=0;RPP=18.2106;RPPR=65.983;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=65.983;SRR=29;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:13,7:13:426:7:239:-15.823,0,-18.947 0/0:5:5,0:5:168:0:0:0,-1.50515,-8.83711 0/0:9:9,0:9:304:0:0:0,-2.70927,-21.5565 0/0:2:2,0:2:70:0:0:0,-0.60206,-5.11859 dDocent_Contig_12834 114 . C G 63.4443 . AB=0.166667;ABP=20.3821;AC=4;AF=0.5;AN=8;AO=4;CIGAR=1X;DP=23;DPB=23;DPRA=1.58333;EPP=11.6962;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=140;QR=663;RO=19;RPL=0;RPP=11.6962;RPPR=44.2683;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=44.2683;SRR=19;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:8:6,2:6:210:2:70:-4.23916,0,-16.8342 0/1:10:9,1:9:313:1:35:-0.488329,0,-25.4968 0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9449 1/1:1:0,1:0:0:1:35:-3.49863,-0.30103,0 dDocent_Contig_12835 7 . T C 72.5178 . AB=0.137255;ABP=61.2994;AC=2;AF=0.25;AN=8;AO=7;CIGAR=2X3M;DP=89;DPB=89;DPRA=10.2;EPP=18.2106;EPPR=157.185;GTI=0;LEN=1;MEANALT=4;MQM=50.7143;MQMR=53.7324;NS=4;NUMALT=4;ODDS=0;PAIRED=0;PAIREDR=0.943662;PAO=0;PQA=0;PQR=0;PRO=0;QA=233;QR=2726;RO=71;RPL=0;RPP=18.2106;RPPR=157.185;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=71;SRP=157.185;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:51:37,0,7,5,0:37:1414:0,7,5,0:0,233,187,0:-7.40476,-18.5429,-132.825,0,-114.276,-112.169,-3.21004,-117.51,-98.9622,-116.005,-18.5429,-132.825,-114.276,-117.51,-132.825 0|1:19:17,2,0,0,0:17:655:2,0,0,0:78,0,0,0:-1.6839,0,-52.0688,-6.80141,-52.6709,-59.0842,-6.80141,-52.6709,-59.0842,-59.0842,-6.80141,-52.6709,-59.0842,-59.0842,-59.0842 0|0:14:12,0,0,0,2:12:467:0,0,0,2:0,0,0,78:-3.18905,-6.80141,-45.1651,-6.80141,-45.1651,-45.1651,-6.80141,-45.1651,-45.1651,-45.1651,0,-38.7532,-38.7532,-38.7532,-38.1511 0|0:5:5,0,0,0,0:5:190:0,0,0,0:0,0,0,0:0,-1.50515,-16.7751,-1.50515,-16.7751,-16.7751,-1.50515,-16.7751,-16.7751,-16.7751,-1.50515,-16.7751,-16.7751,-16.7751,-16.7751 dDocent_Contig_12836 1 . N G 265.315 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=8;CIGAR=1X;DP=8;DPB=8;DPRA=0;EPP=20.3821;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=278;QR=0;RO=0;RPL=0;RPP=20.3821;RPPR=0;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:5:0,5:0:0:5:174:-16.002,-1.50515,0 1/1:1:0,1:0:0:1:35:-3.49863,-0.30103,0 ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:69:-6.55266,-0.60206,0 dDocent_Contig_12837 9 . G T 4363.25 . AB=0.614815;ABP=18.468;AC=5;AF=0.625;AN=8;AO=145;CIGAR=1X;DP=204;DPB=204;DPRA=0;EPP=317.874;EPPR=126.784;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.951724;PAIREDR=0.964912;PAO=0;PQA=0;PQR=0;PRO=0;QA=5528;QR=2177;RO=57;RPL=0;RPP=317.874;RPPR=126.784;RPR=145;RUN=1;SAF=145;SAP=317.874;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:69:5,62:5:177:62:2377:-197.858,-4.27033,0 0/1:48:26,22:26:999:22:837:-61.2033,0,-75.7705 0/1:46:18,28:18:690:28:1060:-81.8531,0,-48.5861 0/1:41:8,33:8:311:33:1254:-100.809,0,-16.0121 dDocent_Contig_12838 71 . C T 80.8561 . AB=0.227273;ABP=17.2236;AC=2;AF=0.25;AN=8;AO=5;CIGAR=1X;DP=39;DPB=39;DPRA=1.29412;EPP=13.8677;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.2;PAIREDR=0.617647;PAO=0;PQA=0;PQR=0;PRO=0;QA=187;QR=1269;RO=34;RPL=5;RPP=13.8677;RPPR=76.8404;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:8,1:8:304:1:39:-1.18729,0,-25.0099 0/0:16:16,0:16:610:0:0:0,-4.81648,-55.2379 0/1:13:9,4:9:316:4:148:-9.76765,0,-24.8609 0/0:1:1,0:1:39:0:0:0,-0.30103,-3.89656 dDocent_Contig_12839 1 . N G 2181.1 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=73;CIGAR=1X;DP=73;DPB=73;DPRA=0;EPP=161.528;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=56.3151;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=0.0410959;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=2498;QR=0;RO=0;RPL=0;RPP=161.528;RPPR=0;RPR=73;RUN=1;SAF=0;SAP=161.528;SAR=73;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:35:0,35:0:0:35:1181:-104.296,-10.5361,0 1/1:12:0,12:0:0:12:420:-32.6774,-3.61236,0 1/1:23:0,23:0:0:23:792:-70.7384,-6.92369,0 1/1:3:0,3:0:0:3:105:-9.79616,-0.90309,0 dDocent_Contig_12840 53 . T A 519.745 . AB=0.26087;ABP=48.7056;AC=4;AF=0.5;AN=8;AO=24;CIGAR=1X;DP=92;DPB=92;DPRA=0;EPP=55.1256;EPPR=148.499;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=58.7313;NS=4;NUMALT=1;ODDS=0;PAIRED=0.75;PAIREDR=0.940299;PAO=0;PQA=0;PQR=0;PRO=0;QA=950;QR=2620;RO=67;RPL=24;RPP=55.1256;RPPR=148.499;RPR=0;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=67;SRP=148.499;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:54:46,8:46:1801:8:317:-12.6408,0,-143.896 0/1:6:4,1:4:163:1:40:-2.19575,0,-13.3199 0/1:13:4,9:4:158:9:356:-28.4878,0,-10.6866 0/1:19:13,6:13:498:6:237:-15.9839,0,-37.7138 dDocent_Contig_12841 65 . T C 80.3667 . AB=0.285714;ABP=8.59409;AC=2;AF=0.25;AN=8;AO=4;CIGAR=1X;DP=49;DPB=49;DPRA=0.4;EPP=11.6962;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=156;QR=1701;RO=45;RPL=4;RPP=11.6962;RPPR=100.727;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:14:14,0:14:538:0:0:0,-4.21442,-48.7646 0/0:21:21,0:21:774:0:0:0,-6.32163,-69.9745 0/1:10:9,1:9:350:1:39:-0.886264,0,-28.8511 0/1:4:1,3:1:39:3:117:-9.70626,0,-2.69244 dDocent_Contig_12842 6 . C T 1542.85 . AB=0.0533333;ABP=132.98;AC=0;AF=0;AN=8;AO=4;CIGAR=1X2M1X21M;DP=128;DPB=128;DPRA=0;EPP=11.6962;EPPR=37.7539;GTI=0;LEN=1;MEANALT=8.5;MQM=60;MQMR=60;NS=4;NUMALT=9;ODDS=2.77556e-17;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=137;QR=624;RO=16;RPL=0;RPP=11.6962;RPPR=37.7539;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:19:0,2,0,0,3,2,2,0,3,6:0:0:2,0,0,3,2,2,0,3,6:70,0,0,61,56,70,0,63,208:-22.6581,-16.9533,-16.3513,-22.6581,-16.9533,-22.6581,-22.6581,-16.9533,-22.6581,-22.6581,-18.6852,-12.9808,-18.6852,-18.6852,-17.7821,-18.7629,-13.0572,-18.7629,-18.7629,-14.7929,-18.1608,-16.9533,-11.2461,-16.9533,-16.9533,-12.9808,-13.0572,-16.3513,-22.6581,-16.9533,-22.6581,-22.6581,-18.6852,-18.7629,-16.9533,-22.6581,-18.7163,-13.012,-18.7163,-18.7163,-14.7512,-14.824,-13.012,-18.7163,-17.8132,-5.71622,0,-5.71622,-5.71622,-1.74289,-1.81593,0,-5.71622,-1.77413,-3.91004 0|0:35:8,0,0,2,1,1,0,2,1,16:8:311:0,0,2,1,1,0,2,1,16:0,0,32,33,34,0,65,21,571:-44.2295,-46.6377,-72.2165,-46.6377,-72.2165,-72.2165,-44.9049,-70.4818,-70.4818,-69.8797,-44.0388,-69.6184,-69.6184,-67.8841,-69.3174,-44.1065,-69.686,-69.686,-67.9517,-67.0879,-69.385,-46.6377,-72.2165,-72.2165,-70.4818,-69.6184,-69.686,-72.2165,-41.5831,-67.1636,-67.1636,-65.4296,-64.5655,-64.6331,-67.1636,-66.5615,-45.3226,-70.9009,-70.9009,-69.1668,-68.3029,-68.3705,-70.9009,-65.8482,-70.5999,0,-25.6348,-25.6348,-23.9066,-23.0346,-23.1024,-25.6348,-20.5779,-24.3208,-20.8183 0|0:56:7,2,6,1,11,2,0,0,0,23:7:273:2,6,1,11,2,0,0,0,23:67,207,16,304,65,0,0,0,814:-64.2285,-60.9088,-82.7573,-49.5145,-66.5397,-70.1601,-65.4666,-82.4901,-71.0973,-87.6154,-43.9023,-60.9264,-49.5344,-65.484,-63.0408,-61.2339,-78.2579,-66.8648,-82.8151,-61.2515,-83.0823,-66.3357,-83.3594,-71.9663,-87.9164,-66.3522,-83.6844,-88.7858,-66.3357,-83.3594,-71.9663,-87.9164,-66.3522,-83.6844,-88.7858,-88.7858,-66.3357,-83.3594,-71.9663,-87.9164,-66.3522,-83.6844,-88.7858,-88.7858,-88.7858,0,-17.0356,-5.63771,-21.5961,-0.0366981,-17.3611,-22.4636,-22.4636,-22.4636,-15.5399 0|0:18:1,0,0,2,2,1,0,0,0,10:1:40:0,0,2,2,1,0,0,0,10:0,0,32,52,33,0,0,0,355:-28.9077,-29.2087,-32.5091,-29.2087,-32.5091,-32.5091,-27.4858,-30.7854,-30.7854,-30.1834,-25.6814,-28.9819,-28.9819,-27.2628,-28.3798,-26.8108,-30.1115,-30.1115,-28.3894,-26.585,-29.8105,-29.2087,-32.5091,-32.5091,-30.7854,-28.9819,-30.1115,-32.5091,-29.2087,-32.5091,-32.5091,-30.7854,-28.9819,-30.1115,-32.5091,-32.5091,-29.2087,-32.5091,-32.5091,-30.7854,-28.9819,-30.1115,-32.5091,-32.5091,-32.5091,-0.213774,-3.5301,-3.5301,-1.82427,0,-1.12495,-3.5301,-3.5301,-3.5301,-0.519799 dDocent_Contig_12843 27 . C T 77.6653 . AB=0.5;ABP=3.0103;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=27;DPB=27;DPRA=1.75;EPP=11.6962;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=160;QR=909;RO=23;RPL=0;RPP=11.6962;RPPR=52.9542;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:6:3,3:3:122:3:119:-9.28883,0,-9.56631 0/0:15:14,1:14:551:1:41:0,-0.420883,-45.8331 0/0:6:6,0:6:236:0:0:0,-1.80618,-21.6088 ./.:.:.:.:.:.:.:. dDocent_Contig_12844 57 . G T 131.483 . AB=0.368421;ABP=5.8675;AC=2;AF=0.25;AN=8;AO=10;CIGAR=1X;DP=52;DPB=52;DPRA=0;EPP=24.725;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=322;QR=1588;RO=42;RPL=10;RPP=24.725;RPPR=94.2121;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:17:15,2:15:558:2:45:0,-0.842934,-46.279 0/1:9:7,2:7:270:2:65:-3.46376,0,-21.956 0/0:16:15,1:15:577:1:37:0,-1.11865,-48.5747 0/1:10:5,5:5:183:5:175:-13.0786,0,-13.8146 dDocent_Contig_12845 7 . T C 3906.67 . AB=0.740113;ABP=91.6481;AC=4;AF=0.5;AN=8;AO=131;CIGAR=1X;DP=177;DPB=177;DPRA=0;EPP=287.473;EPPR=100.727;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5003;QR=1699;RO=45;RPL=0;RPP=287.473;RPPR=100.727;RPR=131;RUN=1;SAF=131;SAP=287.473;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:70:18,52:18:681:52:2006:-159.705,0,-40.5482 0/1:66:15,51:15:565:51:1921:-153.261,0,-31.3174 0/1:20:6,13:6:228:13:500:-39.2389,0,-14.7764 0/1:21:6,15:6:225:15:576:-45.8598,0,-14.2893 dDocent_Contig_12846 33 . T G 249.916 . AB=0.454545;ABP=3.40511;AC=2;AF=0.25;AN=8;AO=10;CIGAR=1X;DP=41;DPB=41;DPRA=1.15789;EPP=24.725;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=381;QR=1249;RO=31;RPL=0;RPP=24.725;RPPR=70.3259;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:15:15,0:15:601:0:0:0,-4.51545,-54.4264 0/0:4:4,0:4:163:0:0:0,-1.20412,-15.0584 0/1:10:6,4:6:244:4:146:-10.4806,0,-19.3285 0/1:12:6,6:6:241:6:235:-17.9089,0,-18.4539 dDocent_Contig_12847 42 . T C 74.2981 . AB=0.3125;ABP=7.89611;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=48;DPB=48;DPRA=1.5;EPP=13.8677;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=31.8;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=203;QR=1502;RO=43;RPL=0;RPP=13.8677;RPPR=96.3836;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:12:12,0:12:426:0:0:0,-3.61236,-38.6781 0/1:16:11,5:11:374:5:203:-9.12877,0,-29.1697 0/0:13:13,0:13:460:0:0:0,-3.91339,-41.7357 0/0:7:7,0:7:242:0:0:0,-2.10721,-22.1161 dDocent_Contig_12848 12 . C G 764.689 . AB=0.444444;ABP=4.69922;AC=4;AF=0.5;AN=8;AO=28;CIGAR=1X1M1X;DP=63;DPB=63;DPRA=0;EPP=63.8115;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.428571;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1126;QR=1386;RO=35;RPL=0;RPP=63.8115;RPPR=79.0118;RPR=28;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:5:2,3:2:80:3:120:-9.68254,0,-6.08664 0|1:24:9,15:9:336:15:602:-47.2941,0,-23.3576 0|1:23:15,8:15:606:8:323:-22.5153,0,-47.9551 0|1:11:9,2:9:364:2:81:-4.3744,0,-29.8134 dDocent_Contig_12850 1 . N G 95.9162 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=23.5;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=159;QR=0;RO=0;RPL=0;RPP=11.6962;RPPR=0;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1:0,1:0:0:1:41:-2.48926,-0.30103,0 1/1:2:0,2:0:0:2:82:-4.72959,-0.60206,0 1/1:1:0,1:0:0:1:36:-1.89153,-0.30103,0 ./.:.:.:.:.:.:.:. dDocent_Contig_12851 8 . A G 148.881 . AB=0.225806;ABP=23.254;AC=5;AF=0.625;AN=8;AO=8;CIGAR=1X;DP=32;DPB=32;DPRA=0;EPP=20.3821;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.958333;PAO=0;PQA=0;PQR=0;PRO=0;QA=312;QR=931;RO=24;RPL=0;RPP=20.3821;RPPR=55.1256;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1:0,1:0:0:1:39:-3.89656,-0.30103,0 0/1:7:5,2:5:194:2:80:-5.48436,0,-15.7256 0/1:13:10,3:10:383:3:115:-6.8115,0,-30.9116 0/1:11:9,2:9:354:2:78:-4.09214,0,-28.9112 dDocent_Contig_12852 12 . A T 226.813 . AB=0.139535;ABP=51.5402;AC=5;AF=0.625;AN=8;AO=14;CIGAR=1X2M1X1M1X;DP=155;DPB=155;DPRA=0;EPP=33.4109;EPPR=304.845;GTI=0;LEN=1;MEANALT=1.5;MQM=35;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.582734;PAO=0;PQA=0;PQR=0;PRO=0;QA=554;QR=5511;RO=139;RPL=0;RPP=33.4109;RPPR=304.845;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=139;SRP=304.845;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:105:102,2:102:4033:2:81:0,-25.0959,-356.594 1|1:4:0,4:0:0:4:157:-12.4186,-1.20412,0 0|1:43:37,6:37:1478:6:234:-5.4789,0,-120.329 1|1:3:0,2:0:0:2:82:-6.1814,-0.60206,0 dDocent_Contig_12854 21 . G C 1475.25 . AB=0.0310078;ABP=249.464;AC=0;AF=0;AN=8;AO=4;CIGAR=1X2M1X1M1X;DP=199;DPB=199;DPRA=0;EPP=11.6962;EPPR=109.412;GTI=0;LEN=1;MEANALT=6;MQM=40;MQMR=60;NS=4;NUMALT=6;ODDS=0;PAIRED=0;PAIREDR=0.265306;PAO=0;PQA=0;PQR=0;PRO=0;QA=158;QR=1894;RO=49;RPL=0;RPP=11.6962;RPPR=109.412;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:84:17,1,22,8,8,22,6:17:649:1,22,8,8,22,6:39,852,298,321,870,231:-70.947,-73.0838,-126.034,-18.3547,-68.6244,-64.9822,-51.6825,-101.954,-47.225,-102.527,-50.6699,-100.942,-46.2123,-79.5416,-101.515,-4.45289,-54.7316,0,-33.329,-32.3162,-51.0898,-67.416,-117.684,-62.9595,-96.2849,-95.2726,-49.0644,-118.858 0|0:45:17,3,8,2,4,3,8:17:660:3,8,2,4,3,8:119,321,79,160,120,310:-15.8134,-11.8868,-65.2474,0,-45.2293,-51.8601,-14.4231,-59.6465,-47.7643,-68.0836,-9.06792,-54.294,-42.4121,-56.8292,-62.1291,-11.0346,-56.2604,-44.3781,-58.7957,-53.4431,-64.3967,-10.473,-55.6784,-43.804,-58.2125,-52.8623,-54.8272,-62.3065 0|0:50:5,0,13,8,4,12,6:5:199:0,13,8,4,12,6:0,517,302,162,475,230:-59.6637,-61.1689,-77.5595,-22.7174,-39.1101,-35.1967,-36.4138,-52.8059,-14.3543,-50.3976,-48.0604,-64.4519,-26.0009,-39.6971,-63.2478,-22.0623,-38.4564,0,-13.6981,-25.3461,-34.844,-52.2087,-68.5973,-30.1566,-43.8478,-55.4913,-29.5,-66.7911 0|0:20:10,0,4,1,4,1,0:10:386:0,4,1,4,1,0:0,153,39,149,41,0:-8.44915,-11.4595,-43.1731,0,-31.7146,-30.5104,-8.25005,-39.9663,-28.5078,-39.6652,-0.317992,-32.0289,-20.5745,-28.8224,-30.8248,-8.06965,-39.787,-28.3283,-36.58,-28.6428,-39.486,-11.4595,-43.1731,-31.7146,-39.9663,-32.0289,-39.787,-43.1731 dDocent_Contig_12855 98 . N G 542.577 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=18;CIGAR=1X;DP=18;DPB=18;DPRA=0;EPP=42.0968;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=593;QR=0;RO=0;RPL=18;RPP=42.0968;RPPR=0;RPR=0;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:16:0,16:0:0:16:540:-48.9216,-4.81648,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:53:-5.03451,-0.60206,0 dDocent_Contig_12857 98 . N T 358.266 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=11;CIGAR=1X;DP=11;DPB=11;DPRA=0;EPP=26.8965;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=380;QR=0;RO=0;RPL=11;RPP=26.8965;RPPR=0;RPR=0;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1:0,1:0:0:1:35:-3.49863,-0.30103,0 1/1:7:0,7:0:0:7:243:-22.2086,-2.10721,0 1/1:3:0,3:0:0:3:102:-9.5166,-0.90309,0 ./.:.:.:.:.:.:.:. dDocent_Contig_12858 110 . T C 554.829 . AB=0.142857;ABP=41.7866;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X3M1X2M1X1M;DP=52;DPB=52;DPRA=2.1875;EPP=13.8677;EPPR=39.9253;GTI=0;LEN=1;MEANALT=3.5;MQM=60;MQMR=60;NS=4;NUMALT=4;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=158;QR=576;RO=17;RPL=0;RPP=13.8677;RPPR=39.9253;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=39.9253;SRR=17;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:9:2,0,0,0,7:2:68:0,0,0,7:0,0,0,238:-19.0435,-19.6455,-25.1615,-19.6455,-25.1615,-25.1615,-19.6455,-25.1615,-25.1615,-25.1615,0,-5.85587,-5.85587,-5.85587,-3.74866 0|0:8:7,0,0,0,0:7:238:0,0,0,0:0,0,0,0:0,-2.10721,-21.6492,-2.10721,-21.6492,-21.6492,-2.10721,-21.6492,-21.6492,-21.6492,-2.10721,-21.6492,-21.6492,-21.6492,-21.6492 0|0:25:6,2,4,12,0:6:200:2,4,12,0:60,139,413,0:-31.7697,-28.7821,-44.3697,-22.2689,-33.6668,-37.257,0,-11.4119,-4.88962,-12.5941,-33.5759,-44.9717,-38.4612,-16.2064,-49.7661 1|0:10:2,3,3,2,0:2:70:3,3,2,0:98,104,67,0:-10.0644,-2.75749,-7.55215,-2.20675,0,-7.00483,-5.24068,-3.03277,-2.48202,-10.3374,-10.6664,-8.45524,-7.90792,-10.9395,-16.3647 dDocent_Contig_12859 203 . C G 1601.6 . AB=0.773333;ABP=51.6802;AC=4;AF=0.5;AN=8;AO=58;CIGAR=1X;DP=75;DPB=75;DPRA=0;EPP=128.956;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2097;QR=621;RO=17;RPL=58;RPP=128.956;RPPR=39.9253;RPR=0;RUN=1;SAF=0;SAP=128.956;SAR=58;SRF=0;SRP=39.9253;SRR=17;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:53:8,45:8:292:45:1635:-131.48,0,-10.676 0/1:14:7,7:7:255:7:242:-17.9001,0,-19.0874 0/1:4:1,3:1:37:3:111:-9.1498,0,-2.49371 0/1:4:1,3:1:37:3:109:-8.96388,0,-2.49371 dDocent_Contig_12860 26 . A G 353.477 . AB=0.571429;ABP=3.94093;AC=1;AF=0.125;AN=8;AO=12;CIGAR=1X;DP=39;DPB=39;DPRA=3.5;EPP=29.068;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=478;QR=1093;RO=27;RPL=0;RPP=29.068;RPPR=61.6401;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:13:13,0:13:529:0:0:0,-3.91339,-47.9566 0/1:21:9,12:9:361:12:478:-37.046,0,-26.5299 0/0:4:4,0:4:162:0:0:0,-1.20412,-14.967 0/0:1:1,0:1:41:0:0:0,-0.30103,-4.09457 dDocent_Contig_12861 7 . T A 73.2773 . AB=0;ABP=0;AC=2;AF=0.25;AN=8;AO=2;CIGAR=1X;DP=40;DPB=40;DPRA=0.157895;EPP=7.35324;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=74;QR=1460;RO=38;RPL=0;RPP=7.35324;RPPR=85.5263;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:19:19,0:19:735:0:0:0,-5.71957,-66.4813 0/0:18:18,0:18:686:0:0:0,-5.41854,-62.0736 0/0:1:1,0:1:39:0:0:0,-0.30103,-3.89656 1/1:2:0,2:0:0:2:74:-7.02588,-0.60206,0 dDocent_Contig_12863 35 . T A 1153.53 . AB=0.380165;ABP=18.1029;AC=3;AF=0.375;AN=8;AO=50;CIGAR=1X2M;DP=175;DPB=175;DPRA=0;EPP=111.584;EPPR=267.93;GTI=0;LEN=1;MEANALT=1.25;MQM=56.48;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1903;QR=4790;RO=122;RPL=0;RPP=111.584;RPPR=267.93;RPR=50;RUN=1;SAF=50;SAP=111.584;SAR=0;SRF=122;SRP=267.93;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:62:32,0,30:32:1252:0,30:0,1144:-83.7595,-93.3925,-196.33,0,-103.322,-94.2909 0|0:54:50,0,4:50:1961:0,4:0,157:0,-15.0515,-176.315,-1.74703,-163.403,-162.199 0|1:44:32,0,12:32:1264:0,12:0,442:-26.2156,-35.8486,-139.882,0,-104.405,-100.792 0|1:15:8,3,4:8:313:3,4:118,160:-10.7757,-3.48057,-28.3078,0,-16.0278,-24.5305 dDocent_Contig_12864 107 . N G 102.659 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=7.37776;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=111;QR=0;RO=0;RPL=0;RPP=11.6962;RPPR=0;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:4:0,4:0:0:4:111:-10.2657,-1.20412,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_12866 51 . T C 10131.9 . AB=0.83913;ABP=232.771;AC=5;AF=0.625;AN=8;AO=307;CIGAR=1X;DP=349;DPB=349;DPRA=0;EPP=669.652;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.996743;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=12289;QR=1682;RO=42;RPL=307;RPP=669.652;RPPR=94.2121;RPR=0;RUN=1;SAF=307;SAP=669.652;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:161:26,135:26:1039:135:5410:-438.255,0,-45.3356 1/1:119:5,114:5:201:114:4567:-392.477,-17.3521,0 0/1:43:5,38:5:198:38:1530:-124.994,0,-5.25218 0/1:26:6,20:6:244:20:782:-62.8592,0,-14.5118 dDocent_Contig_12867 27 . T A 79.2707 . AB=0.0833333;ABP=39.2015;AC=2;AF=0.25;AN=8;AO=2;CIGAR=1X1M;DP=75;DPB=75;DPRA=2.4;EPP=7.35324;EPPR=150.67;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=2734;RO=68;RPL=0;RPP=7.35324;RPPR=150.67;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=68;SRP=150.67;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:31:26,5,0:26:1032:5,0:203,0:-9.32113,0,-83.8398,-17.1479,-85.345,-102.089 0|1:24:22,0,2:22:893:0,2:0,82:-0.554958,-7.17762,-80.8223,0,-74.0538,-73.4517 0|0:11:11,0,0:11:446:0,0:0,0:0,-3.31133,-40.4958,-3.31133,-40.4958,-40.4958 0|0:9:9,0,0:9:363:0,0:0,0:0,-2.70927,-33.0347,-2.70927,-33.0347,-33.0347 dDocent_Contig_12868 14 . A G 42.1257 . AB=0.513514;ABP=3.06899;AC=3;AF=0.375;AN=8;AO=21;CIGAR=1X;DP=46;DPB=46;DPRA=0;EPP=48.6112;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=11.4286;MQMR=55.2;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.8;PAO=0;PQA=0;PQR=0;PRO=0;QA=757;QR=1009;RO=25;RPL=0;RPP=48.6112;RPPR=57.2971;RPR=21;RUN=1;SAF=0;SAP=48.6112;SAR=21;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:5,6:5:199:6:216:-2.73173,0,-14.977 0/1:10:3,7:3:123:7:253:-4.84155,0,-8.45449 0/1:16:10,6:10:401:6:216:-1.22658,0,-27.9937 0/0:9:7,2:7:286:2:72:0,-0.621669,-22.1091 dDocent_Contig_12869 25 . A G 298.248 . AB=0.545455;ABP=3.20771;AC=5;AF=0.625;AN=8;AO=8;CIGAR=1X2M;DP=29;DPB=29;DPRA=0.8125;EPP=20.3821;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=319;QR=639;RO=16;RPL=0;RPP=20.3821;RPPR=37.7539;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:5:0,5,0:0:0:5,0:201,0:-5.05761,-1.50515,0,-5.05761,-1.50515,-5.05761 0|0:11:11,0,0:11:444:0,0:0,0:0,-3.31133,-40.3164,-3.31133,-40.3164,-40.3164 0|1:11:5,0,6:5:195:0,6:0,239:-18.573,-20.0781,-36.1029,0,-16.4182,-14.612 1|1:2:0,0,2:0:0:0,2:0,80:-7.59157,-7.59157,-7.59157,-0.60206,-0.60206,0 dDocent_Contig_12870 37 . A T 293.416 . AB=0.371429;ABP=8.03571;AC=4;AF=0.5;AN=8;AO=13;CIGAR=1X;DP=35;DPB=35;DPRA=0;EPP=31.2394;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.461538;PAIREDR=0.857143;PAO=0;PQA=0;PQR=0;PRO=0;QA=495;QR=839;RO=21;RPL=0;RPP=31.2394;RPPR=48.6112;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:9,7:9:357:7:262:-19.1141,0,-27.6753 0/1:3:1,2:1:38:2:81:-6.78264,0,-2.89418 0/1:6:3,3:3:119:3:114:-8.82391,0,-9.28883 0/1:10:8,1:8:325:1:38:-0.693407,0,-26.5011 dDocent_Contig_12871 161 . G T 410.221 . AB=0.457143;ABP=3.56868;AC=2;AF=0.333333;AN=6;AO=16;CIGAR=1X;DP=39;DPB=39;DPRA=4.375;EPP=37.7539;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=604;QR=916;RO=23;RPL=16;RPP=37.7539;RPPR=52.9542;RPR=0;RUN=1;SAF=0;SAP=37.7539;SAR=16;SRF=0;SRP=52.9542;SRR=23;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:9,14:9:357:14:525:-40.6581,0,-25.5666 ./.:.:.:.:.:.:.:. 0/1:12:10,2:10:399:2:79:-3.88488,0,-32.6573 0/0:4:4,0:4:160:0:0:0,-1.20412,-14.7829 dDocent_Contig_12873 36 . T C 723.865 . AB=0.555556;ABP=4.21667;AC=4;AF=0.5;AN=8;AO=25;CIGAR=1X;DP=45;DPB=45;DPRA=0;EPP=57.2971;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1020;QR=808;RO=20;RPL=0;RPP=57.2971;RPPR=46.4397;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:7,4:7:284:4:164:-11.8386,0,-22.6225 0/1:13:7,6:7:283:6:246:-18.6067,0,-21.9296 0/1:17:3,14:3:120:14:569:-46.435,0,-6.0698 0/1:4:3,1:3:121:1:41:-2.89045,0,-10.0759 dDocent_Contig_12874 152 . T C 117.722 . AB=0.285714;ABP=5.80219;AC=3;AF=0.375;AN=8;AO=4;CIGAR=1X;DP=19;DPB=19;DPRA=0.9;EPP=11.6962;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=161;QR=610;RO=15;RPL=0;RPP=11.6962;RPPR=35.5824;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=35.5824;SRR=15;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:7:7,0:7:285:0:0:0,-2.10721,-26.0244 0/0:3:3,0:3:122:0:0:0,-0.90309,-11.3725 0/1:7:5,2:5:203:2:79:-5.39003,0,-16.5458 1/1:2:0,2:0:0:2:82:-7.77968,-0.60206,0 dDocent_Contig_12876 52 . A T 172.893 . AB=0.666667;ABP=5.18177;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1M1D1X1M1X;DP=45;DPB=43.8;DPRA=0.5;EPP=16.0391;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=235;QR=1473;RO=39;RPL=6;RPP=16.0391;RPPR=87.6977;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:9:3,6:3:116:6:235:-18.8122,0,-8.10843 0|0:18:18,0:18:662:0:0:0,-5.41854,-59.9002 0|0:18:18,0:18:695:0:0:0,-5.41854,-62.881 .:.:.:.:.:.:.:. dDocent_Contig_12877 7 . T C 796.116 . AB=0.102273;ABP=123.922;AC=0;AF=0;AN=8;AO=9;CIGAR=1X1M1X1M1X;DP=99;DPB=99;DPRA=0;EPP=22.5536;EPPR=126.784;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.929825;PAO=0;PQA=0;PQR=0;PRO=0;QA=341;QR=2216;RO=57;RPL=0;RPP=22.5536;RPPR=126.784;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:36:25,1,10:25:971:1,10:39,388:-24.3524,-28.6721,-108.161,0,-76.582,-76.7777 0|0:34:17,5,12:17:663:5,12:185,467:-33.2768,-23.2668,-76.2621,0,-39.3867,-50.903 0|0:18:6,3,9:6:234:3,9:117,348:-26.776,-18.9637,-37.2972,0,-9.61763,-16.526 0|0:11:9,0,2:9:348:0,2:0,62:-2.57648,-5.28575,-33.9327,0,-28.9708,-28.3687 dDocent_Contig_12878 43 . T A 1086.94 . AB=0.422535;ABP=6.71098;AC=5;AF=0.625;AN=8;AO=37;CIGAR=1X;DP=78;DPB=78;DPRA=0;EPP=83.3548;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.945946;PAIREDR=0.97561;PAO=0;PQA=0;PQR=0;PRO=0;QA=1489;QR=1593;RO=41;RPL=0;RPP=83.3548;RPPR=92.0407;RPR=37;RUN=1;SAF=37;SAP=83.3548;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:9,12:9:344:12:479:-37.1381,0,-24.9838 0/1:28:15,13:15:574:13:521:-38.8072,0,-43.5608 0/1:22:17,5:17:675:5:205:-12.2123,0,-54.4559 1/1:7:0,7:0:0:7:284:-25.934,-2.10721,0 dDocent_Contig_12879 98 . N C 102.493 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=103;QR=0;RO=0;RPL=3;RPP=9.52472;RPPR=0;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:1:0,1:0:0:1:33:-3.29913,-0.30103,0 1/1:2:0,2:0:0:2:70:-6.6474,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_12881 9 . C T 43.8055 . AB=0.1875;ABP=16.582;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=110;DPB=110;DPRA=0.510638;EPP=9.52472;EPPR=235.358;GTI=0;LEN=1;MEANALT=1;MQM=56;MQMR=57.5701;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.728972;PAO=0;PQA=0;PQR=0;PRO=0;QA=117;QR=4145;RO=107;RPL=0;RPP=9.52472;RPPR=235.358;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=107;SRP=235.358;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:45:45,0:45:1747:0:0:0,-13.5463,-156.676 0/0:30:30,0:30:1159:0:0:0,-9.0309,-104.246 0/1:16:13,3:13:501:3:117:-6.0795,0,-39.4689 0/0:19:19,0:19:738:0:0:0,-5.71957,-66.6661 dDocent_Contig_12882 50 . A G 1149.88 . AB=0.555556;ABP=4.9405;AC=4;AF=0.5;AN=8;AO=40;CIGAR=1X;DP=72;DPB=72;DPRA=0;EPP=89.8692;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.65;PAIREDR=0.59375;PAO=0;PQA=0;PQR=0;PRO=0;QA=1585;QR=1267;RO=32;RPL=40;RPP=89.8692;RPPR=72.4974;RPR=0;RUN=1;SAF=40;SAP=89.8692;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:13,9:13:512:9:367:-26.7726,0,-39.8025 0/1:26:9,17:9:360:17:680:-53.6993,0,-24.937 0/1:13:4,9:4:161:9:348:-27.7599,0,-10.9615 0/1:11:6,5:6:234:5:190:-14.1539,0,-18.1153 dDocent_Contig_12883 10 . G A 77.2689 . AB=0.152174;ABP=51.3492;AC=3;AF=0.375;AN=8;AO=7;CIGAR=1X;DP=52;DPB=52;DPRA=2.55556;EPP=18.2106;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.6667;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.888889;PAO=0;PQA=0;PQR=0;PRO=0;QA=285;QR=1752;RO=45;RPL=0;RPP=18.2106;RPPR=100.727;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:6:6,0:6:234:0:0:0,-1.80618,-21.4064 0/1:11:8,3:8:313:3:123:-8.15346,0,-25.2099 0/1:19:17,2:17:661:2:81:-1.96616,0,-54.0983 0/1:16:14,2:14:544:2:81:-2.86925,0,-44.4847 dDocent_Contig_12884 10 . G A 65.7821 . AB=0.190476;ABP=20.4855;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=54;DPB=54;DPRA=1.90909;EPP=11.6962;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=0;PAIREDR=0.82;PAO=0;PQA=0;PQR=0;PRO=0;QA=158;QR=1979;RO=50;RPL=0;RPP=11.6962;RPPR=111.584;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:3:3,0:3:110:0:0:0,-0.90309,-10.2563 0/0:24:24,0:24:950:0:0:0,-7.22472,-85.8059 0/1:21:17,4:17:675:4:158:-8.27703,0,-54.7575 0/0:6:6,0:6:244:0:0:0,-1.80618,-22.3388 dDocent_Contig_12885 27 . A G 63.531 . AB=0.3;ABP=6.48466;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=62;DPB=62;DPRA=0.384615;EPP=9.52472;EPPR=131.127;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=120;QR=2147;RO=59;RPL=0;RPP=9.52472;RPPR=131.127;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=59;SRP=131.127;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 0/0:32:32,0:32:1144:0:0:0,-9.63296,-103.262 0/1:10:7,3:7:259:3:120:-8.17701,0,-20.6547 0/0:20:20,0:20:744:0:0:0,-6.0206,-67.2874 dDocent_Contig_12887 110 . G A 58.8634 . AB=0.148148;ABP=61.0771;AC=2;AF=0.25;AN=8;AO=8;CIGAR=1X;DP=61;DPB=61;DPRA=7.71429;EPP=20.3821;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=260;QR=1698;RO=53;RPL=0;RPP=20.3821;RPPR=118.098;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=118.098;SRR=53;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:27,3:27:864:3:99:-0.206678,0,-69.027 0/1:24:19,5:19:609:5:161:-7.58326,0,-47.8908 0/0:5:5,0:5:157:0:0:0,-1.50515,-14.4411 0/0:2:2,0:2:68:0:0:0,-0.60206,-6.45788 dDocent_Contig_12888 90 . A G 43.6983 . AB=0.230769;ABP=11.1951;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=56;DPB=56;DPRA=0.906977;EPP=9.52472;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.660377;PAO=0;PQA=0;PQR=0;PRO=0;QA=107;QR=1867;RO=53;RPL=3;RPP=9.52472;RPPR=118.098;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:17:17,0:17:611:0:0:0,-5.11751,-55.3232 0/1:13:10,3:10:357:3:107:-6.06878,0,-28.5589 0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8591 0/0:14:14,0:14:471:0:0:0,-4.21442,-42.7084 dDocent_Contig_12889 65 . G A 275.037 . AB=0.363636;ABP=6.56362;AC=4;AF=0.5;AN=8;AO=10;CIGAR=1X;DP=37;DPB=37;DPRA=0.615385;EPP=24.725;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.6;PAIREDR=0.888889;PAO=0;PQA=0;PQR=0;PRO=0;QA=404;QR=1080;RO=27;RPL=10;RPP=24.725;RPPR=61.6401;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:7:2,5:2:82:5:205:-16.7278,0,-5.67247 1/1:2:0,2:0:0:2:82:-7.77968,-0.60206,0 0/1:15:12,3:12:470:3:117:-6.39384,0,-38.1313 0/0:13:13,0:13:528:0:0:0,-3.91339,-47.8671 dDocent_Contig_12890 12 . T G 1118.11 . AB=0.217742;ABP=174.627;AC=4;AF=0.5;AN=8;AO=54;CIGAR=1X;DP=248;DPB=248;DPRA=0;EPP=120.27;EPPR=424.276;GTI=0;LEN=1;MEANALT=1;MQM=59.8889;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=0;PAIREDR=0.907216;PAO=0;PQA=0;PQR=0;PRO=0;QA=2139;QR=7767;RO=194;RPL=0;RPP=120.27;RPPR=424.276;RPR=54;RUN=1;SAF=54;SAP=120.27;SAR=0;SRF=194;SRP=424.276;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:70:51,19:51:2040:19:735:-45.3793,0,-162.717 0/1:99:81,18:81:3255:18:730:-36.2227,0,-263.205 0/1:37:28,9:28:1108:9:349:-20.6305,0,-88.865 0/1:42:34,8:34:1364:8:325:-16.9764,0,-110.377 dDocent_Contig_12891 15 . C T 94.3886 . AB=0.416667;ABP=3.73412;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=33;DPB=33;DPRA=1.71429;EPP=13.8677;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=35;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=177;QR=1086;RO=28;RPL=0;RPP=13.8677;RPPR=63.8115;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:10:10,0:10:395:0:0:0,-3.0103,-35.9026 0/1:12:7,5:7:276:5:177:-11.1377,0,-21.5959 0/0:3:3,0:3:122:0:0:0,-0.90309,-11.3725 0/0:8:8,0:8:293:0:0:0,-2.40824,-26.7099 dDocent_Contig_12892 34 . T C 394.276 . AB=0.636364;ABP=6.56362;AC=1;AF=0.166667;AN=6;AO=14;CIGAR=1X;DP=44;DPB=44;DPRA=2;EPP=33.4109;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=525;QR=1163;RO=30;RPL=0;RPP=33.4109;RPPR=68.1545;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 0/1:22:8,14:8:314:14:525:-40.9505,0,-22.0024 0/0:6:6,0:6:234:0:0:0,-1.80618,-21.4303 0/0:16:16,0:16:615:0:0:0,-4.81648,-55.68 dDocent_Contig_12894 7 . T C 1627.87 . AB=0.442748;ABP=6.73993;AC=4;AF=0.5;AN=8;AO=58;CIGAR=1X3M;DP=131;DPB=131;DPRA=0;EPP=128.956;EPPR=100.727;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=0.982759;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2236;QR=1709;RO=45;RPL=0;RPP=128.956;RPPR=100.727;RPR=58;RUN=1;SAF=58;SAP=128.956;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:61:20,9,4,28:20:758:9,4,28:342,155,1075:-82.224,-60.1984,-119.635,-75.51,-109.61,-136.452,0,-34.0989,-49.4108,-53.7171 0|1:29:11,4,7,7:11:420:4,7,7:153,271,269:-18.772,-9.52827,-42.7805,-0.0201199,-21.9212,-32.3694,0,-21.9012,-12.3928,-32.3493 0|1:27:7,3,0,17:7:259:3,0,17:111,0,659:-52.0499,-45.0794,-65.3569,-54.1571,-66.26,-75.339,0,-12.1054,-21.1858,-16.0683 0|1:14:7,1,0,6:7:272:1,0,6:38,0,233:-17.0458,-16.0377,-38.0885,-19.153,-38.3896,-41.5055,0,-19.2438,-22.3592,-20.553 dDocent_Contig_12895 21 . G C 1370.82 . AB=0.473684;ABP=3.35316;AC=5;AF=0.625;AN=8;AO=46;CIGAR=1X2M1X2M1X;DP=76;DPB=76;DPRA=0;EPP=102.898;EPPR=65.983;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.804348;PAIREDR=0.724138;PAO=0;PQA=0;PQR=0;PRO=0;QA=1759;QR=1110;RO=29;RPL=0;RPP=102.898;RPPR=65.983;RPR=46;RUN=1;SAF=46;SAP=102.898;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:23:11,11:11:413:11:422:-31.3548,0,-30.5434 0|1:21:13,8:13:506:8:305:-21.486,0,-39.5647 0|1:13:5,8:5:191:8:294:-22.8904,0,-13.6442 1|1:19:0,19:0:0:19:738:-66.7483,-5.71957,0 dDocent_Contig_12897 22 . T G 39.3591 . AB=0.125;ABP=42.0968;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=80;DPB=80;DPRA=1.96296;EPP=13.8677;EPPR=165.871;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.573333;PAO=0;PQA=0;PQR=0;PRO=0;QA=200;QR=3049;RO=75;RPL=0;RPP=13.8677;RPPR=165.871;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=75;SRP=165.871;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:32:28,4:28:1142:4:162:-5.33379,0,-93.4224 0/0:20:20,0:20:812:0:0:0,-6.0206,-73.3955 0/0:21:20,1:20:808:1:38:0,-2.52436,-69.2387 0/0:7:7,0:7:287:0:0:0,-2.10721,-26.2052 dDocent_Contig_12898 15 . C G 158.112 . AB=0.291667;ABP=12.0581;AC=2;AF=0.25;AN=8;AO=7;CIGAR=1X;DP=52;DPB=52;DPRA=0.857143;EPP=18.2106;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=285;QR=1757;RO=44;RPL=0;RPP=18.2106;RPPR=98.5551;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:11,0:11:448:0:0:0,-3.31133,-40.676 0/1:21:15,6:15:593:6:245:-16.1078,0,-47.3868 0/0:17:16,0:16:637:0:0:0,-4.81648,-57.2815 0/1:3:2,1:2:79:1:40:-3.09259,0,-6.59415 dDocent_Contig_12899 72 . T A 116.168 . AB=0.264706;ABP=19.3602;AC=2;AF=0.25;AN=8;AO=9;CIGAR=1X;DP=60;DPB=60;DPRA=1.30769;EPP=22.5536;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.941176;PAO=0;PQA=0;PQR=0;PRO=0;QA=273;QR=1694;RO=51;RPL=9;RPP=22.5536;RPPR=113.755;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:19:19,0:19:632:0:0:0,-5.71957,-57.1942 0/0:7:7,0:7:239:0:0:0,-2.10721,-21.8434 0/1:14:12,2:12:378:2:62:-1.67452,0,-30.1117 0/1:20:13,7:13:445:7:211:-13.2672,0,-34.3569 dDocent_Contig_12900 33 . C T 50.0395 . AB=0.137255;ABP=61.2994;AC=4;AF=0.5;AN=8;AO=7;CIGAR=1X;DP=51;DPB=51;DPRA=0;EPP=18.2106;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=279;QR=1756;RO=44;RPL=0;RPP=18.2106;RPPR=98.5551;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:18,3:18:729:3:123:-5.14316,0,-59.612 0/1:14:12,2:12:475:2:78:-3.18888,0,-38.8847 0/1:9:8,1:8:315:1:41:-1.3853,0,-26.0035 0/1:7:6,1:6:237:1:37:-1.59062,0,-19.5939 dDocent_Contig_12902 107 . N A 230.427 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=7;CIGAR=1X;DP=7;DPB=7;DPRA=0;EPP=18.2106;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0.857143;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=245;QR=0;RO=0;RPL=0;RPP=18.2106;RPPR=0;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:5:0,5:0:0:5:175:-16.0937,-1.50515,0 ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:70:-6.6474,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_12904 45 . T C 324.104 . AB=0.311111;ABP=16.956;AC=3;AF=0.375;AN=8;AO=14;CIGAR=1X;DP=76;DPB=76;DPRA=0.483871;EPP=33.4109;EPPR=137.642;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=558;QR=2498;RO=62;RPL=0;RPP=33.4109;RPPR=137.642;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:31:31,0:31:1254:0:0:0,-9.33193,-113.129 0/1:18:14,4:14:569:4:155:-8.90582,0,-46.1334 0/1:20:13,7:13:513:7:283:-19.8224,0,-40.4949 0/1:7:4,3:4:162:3:120:-9.0801,0,-12.8595 dDocent_Contig_12905 8 . A T 339.313 . AB=0.409091;ABP=4.58955;AC=3;AF=0.375;AN=8;AO=12;CIGAR=2X;DP=38;DPB=38;DPRA=1.92308;EPP=29.068;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=458;QR=985;RO=26;RPL=0;RPP=29.068;RPPR=59.4686;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:22:13,9:13:501:9:343:-24.6039,0,-38.8153 0|0:11:11,0:11:407:0:0:0,-3.31133,-36.97 0|0:2:2,0:2:77:0:0:0,-0.60206,-7.30914 1|1:3:0,3:0:0:3:115:-10.7249,-0.90309,0 dDocent_Contig_12906 32 . G A 473.349 . AB=0.53125;ABP=3.28173;AC=1;AF=0.125;AN=8;AO=17;CIGAR=1X;DP=78;DPB=78;DPRA=2.08696;EPP=39.9253;EPPR=135.47;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=645;QR=2287;RO=61;RPL=0;RPP=39.9253;RPPR=135.47;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=61;SRP=135.47;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:32:15,17:15:519:17:645:-48.7328,0,-37.3794 0/0:30:30,0:30:1173:0:0:0,-9.0309,-105.851 0/0:11:11,0:11:419:0:0:0,-3.31133,-38.0569 0/0:5:5,0:5:176:0:0:0,-1.50515,-16.1798 dDocent_Contig_12907 41 . A G 102.014 . AB=0.0526316;ABP=69.0688;AC=0;AF=0;AN=8;AO=2;CIGAR=7M1X5M;DP=99;DPB=98.0769;DPRA=4.22222;EPP=7.35324;EPPR=178.9;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.91358;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=3149;RO=81;RPL=0;RPP=7.35324;RPPR=178.9;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=81;SRP=178.9;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:38:30,4,2:30:1164:4,2:157,82:-3.91367,0,-94.4765,-6.15979,-88.9107,-101.222 0|0:34:30,3,0:30:1171:3,0:120,0:-1.10902,0,-95.6751,-10.1399,-96.5782,-106.465 0|0:18:12,4,0:12:463:4,0:160,0:-9.67061,0,-36.9365,-13.283,-38.1406,-51.328 0|0:9:9,0,0:9:351:0,0:0,0:0,-2.70927,-31.9498,-2.70927,-31.9498,-31.9498 dDocent_Contig_12908 55 . A G 81.2004 . AB=0.176471;ABP=18.4661;AC=2;AF=0.25;AN=8;AO=3;CIGAR=1X1M1X;DP=34;DPB=34;DPRA=2.83333;EPP=9.52472;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=29;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0.925926;PAO=0;PQA=0;PQR=0;PRO=0;QA=116;QR=1059;RO=27;RPL=3;RPP=9.52472;RPPR=61.6401;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:13:11,2,0:11:430:2,0:76,0:-1.49671,0,-35.1398,-4.80804,-35.7418,-40.2489 0|1:4:3,1,0:3:118:1,0:40,0:-1.66272,0,-9.79877,-2.56581,-10.0998,-12.3524 0|0:14:10,0,4:10:393:0,4:0,151:-9.74186,-12.7522,-45.0878,0,-32.7173,-31.5131 0|0:3:3,0,0:3:118:0,0:0,0:0,-0.90309,-11.0027,-0.90309,-11.0027,-11.0027 dDocent_Contig_12909 209 . N G 151.502 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=7.37776;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=164;QR=0;RO=0;RPL=4;RPP=11.6962;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:4:0,4:0:0:4:164:-15.1499,-1.20412,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_12910 13 . T C 7456.17 . AB=0.829876;ABP=230.799;AC=5;AF=0.625;AN=8;AO=232;CIGAR=1X;DP=275;DPB=275;DPRA=0;EPP=506.792;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=59.5259;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=0.987069;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=9263;QR=1729;RO=43;RPL=0;RPP=506.792;RPPR=96.3836;RPR=232;RUN=1;SAF=232;SAP=506.792;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:63:14,49:14:560:49:1949:-156.644,0,-31.778 0/1:103:11,92:11:444:92:3663:-297.175,0,-9.30914 0/1:75:16,59:16:643:59:2370:-189.417,0,-35.6242 1/1:34:2,32:2:82:32:1281:-107.779,-2.45534,0 dDocent_Contig_12911 27 . T A 471.052 . AB=0.1;ABP=58.6;AC=0;AF=0;AN=8;AO=4;CIGAR=4M1X;DP=101;DPB=87.2;DPRA=5.71429;EPP=11.6962;EPPR=163.699;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.959459;PAO=0;PQA=0;PQR=0;PRO=0;QA=150;QR=2852;RO=74;RPL=0;RPP=11.6962;RPPR=163.699;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=74;SRP=163.699;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:36:20,16,0:20:769:16,0:611,0:-44.4896,0,-58.6981,-50.5102,-63.5146,-113.642 0|0:40:31,5,4:31:1198:5,4:187,150:-5.97947,0,-96.894,-3.02469,-86.1142,-100.22 0|0:18:16,2,0:16:619:2,0:73,0:-1.51256,0,-50.6284,-6.32904,-51.2304,-57.1922 0|0:7:7,0,0:7:266:0,0:0,0:0,-2.10721,-24.3013,-2.10721,-24.3013,-24.3013 dDocent_Contig_12912 23 . T A 1087.65 . AB=0.401961;ABP=11.5259;AC=4;AF=0.5;AN=8;AO=41;CIGAR=2X;DP=102;DPB=102;DPRA=0;EPP=92.0407;EPPR=135.47;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1616;QR=2374;RO=61;RPL=0;RPP=92.0407;RPPR=135.47;RPR=41;RUN=1;SAF=41;SAP=92.0407;SAR=0;SRF=61;SRP=135.47;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:53:35,18:35:1377:18:712:-48.4541,0,-108.248 0|1:16:12,4:12:457:4:159:-9.87547,0,-36.6614 0|1:22:11,11:11:425:11:424:-31.8862,0,-31.9784 0|1:11:3,8:3:115:8:321:-25.9469,0,-7.41315 dDocent_Contig_12914 9 . C A 292.436 . AB=0.368421;ABP=5.8675;AC=4;AF=0.5;AN=8;AO=16;CIGAR=1X;DP=84;DPB=84;DPRA=0;EPP=37.7539;EPPR=150.67;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=609;QR=2593;RO=68;RPL=0;RPP=37.7539;RPPR=150.67;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=68;SRP=150.67;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:4:0,4:0:0:4:156:-14.4173,-1.20412,0 0/0:61:56,5:56:2136:5:195:0,-0.438633,-174.537 0/1:13:9,4:9:342:4:146:-9.58326,0,-27.2234 0/1:6:3,3:3:115:3:112:-8.64055,0,-8.91871 dDocent_Contig_12915 14 . G A 627.275 . AB=0.3125;ABP=27.4394;AC=3;AF=0.375;AN=8;AO=26;CIGAR=5M1X;DP=102;DPB=103.333;DPRA=0;EPP=59.4686;EPPR=163.699;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.961538;PAIREDR=0.945946;PAO=0;PQA=0;PQR=0;PRO=0;QA=1051;QR=2668;RO=74;RPL=0;RPP=59.4686;RPPR=163.699;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=74;SRP=163.699;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:30:14,0,16:14:507:0,16:0,648:-49.6228,-53.8372,-95.2085,0,-41.7531,-36.9366 0|1:28:23,0,5:23:825:0,5:0,204:-10.3152,-17.2389,-84.4862,0,-67.646,-66.1409 0|1:22:16,2,4:16:581:2,4:78,158:-8.18746,-6.59382,-53.4117,0,-41.0068,-46.2174 0|0:22:21,0,1:21:755:0,1:0,41:0,-6.32163,-67.8667,-2.52809,-64.4803,-64.1793 dDocent_Contig_12916 37 . A C 143.717 . AB=0.4;ABP=4.31318;AC=2;AF=0.25;AN=8;AO=6;CIGAR=1X;DP=43;DPB=43;DPRA=0.535714;EPP=16.0391;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.666667;PAIREDR=0.567568;PAO=0;PQA=0;PQR=0;PRO=0;QA=239;QR=1460;RO=37;RPL=0;RPP=16.0391;RPPR=83.3548;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:18:18,0:18:712:0:0:0,-5.41854,-64.4075 0/0:10:10,0:10:398:0:0:0,-3.0103,-36.1773 0/1:9:5,4:5:196:4:158:-11.8901,0,-15.3021 0/1:6:4,2:4:154:2:81:-5.87955,0,-12.4232 dDocent_Contig_12917 23 . A G 175.159 . AB=0.181818;ABP=61.0478;AC=3;AF=0.375;AN=8;AO=13;CIGAR=1X1M1X;DP=83;DPB=83;DPRA=0;EPP=31.2394;EPPR=155.013;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.857143;PAO=0;PQA=0;PQR=0;PRO=0;QA=502;QR=2742;RO=70;RPL=0;RPP=31.2394;RPPR=155.013;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=70;SRP=155.013;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:24:20,4:20:796:4:158:-7.37525,0,-64.7368 0|1:32:27,5:27:1057:5:195:-8.2906,0,-85.7867 0|0:17:16,1:16:620:1:39:0,-1.22095,-52.2375 0|1:10:7,3:7:269:3:110:-7.2479,0,-21.5608 dDocent_Contig_12918 9 . C T 603.067 . AB=0.142857;ABP=320.976;AC=3;AF=0.375;AN=8;AO=41;CIGAR=1X1M1X;DP=299;DPB=299;DPRA=7.97222;EPP=92.0407;EPPR=508.963;GTI=0;LEN=1;MEANALT=2.33333;MQM=58.8293;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1603;QR=9140;RO=233;RPL=0;RPP=92.0407;RPPR=508.963;RPR=41;RUN=1;SAF=41;SAP=92.0407;SAR=0;SRF=233;SRP=508.963;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:148:109,22,16:109:4258:22,16:863,602:-38.1578,0,-343.441,-21.6834,-300.776,-366.915 0|1:109:85,16,7:85:3339:16,7:620,249:-25.3201,0,-269.842,-30.681,-254.426,-303.207 0|1:30:27,3,0:27:1067:3,0:120,0:-2.157,0,-87.2965,-10.2848,-88.1995,-98.0853 0|0:12:12,0,0:12:476:0,0:0,0:0,-3.61236,-43.1926,-3.61236,-43.1926,-43.1926 dDocent_Contig_12919 28 . T C 274.133 . AB=0.26;ABP=28.0257;AC=3;AF=0.375;AN=8;AO=13;CIGAR=1X;DP=52;DPB=52;DPRA=8.33333;EPP=31.2394;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.974359;PAO=0;PQA=0;PQR=0;PRO=0;QA=519;QR=1559;RO=39;RPL=0;RPP=31.2394;RPPR=87.6977;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:22,3:22:887:3:123:-3.93904,0,-72.6131 0/0:2:2,0:2:81:0:0:0,-0.60206,-7.68573 0/1:20:12,8:12:469:8:315:-22.6901,0,-36.5323 0/1:5:3,2:3:122:2:81:-6.18058,0,-9.86734 dDocent_Contig_12920 17 . A C 39.5455 . AB=0.157895;ABP=22.325;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=127;DPB=127;DPRA=2.34211;EPP=16.0391;EPPR=265.758;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=243;QR=4845;RO=121;RPL=0;RPP=16.0391;RPPR=265.758;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=121;SRP=265.758;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:37:37,0:37:1483:0:0:0,-11.1381,-133.716 0/0:70:67,3:67:2681:3:121:0,-9.7919,-230.126 0/1:19:16,3:16:640:3:122:-5.65292,0,-52.2142 0/0:1:1,0:1:41:0:0:0,-0.30103,-4.09457 dDocent_Contig_12921 27 . T C 644.218 . AB=0.44;ABP=4.57376;AC=5;AF=0.625;AN=8;AO=22;CIGAR=1X4M;DP=50;DPB=50;DPRA=0;EPP=50.7827;EPPR=46.4397;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=857;QR=787;RO=20;RPL=0;RPP=50.7827;RPPR=46.4397;RPR=22;RUN=1;SAF=0;SAP=50.7827;SAR=22;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:18:10,2,6:10:395:2,6:69,233:-16.1651,-13.5825,-45.4882,0,-26.9497,-30.739 0|1:16:8,3,4:8:312:3,4:121,161:-10.871,-3.29857,-28.0418,0,-15.6694,-24.4448 1|1:5:0,2,3:0:0:2,3:80,122:-17.0569,-10.4694,-9.86734,-6.98973,0,-6.08664 0|1:11:2,0,9:2:80:0,9:0,341:-27.726,-28.3281,-34.9221,0,-6.98973,-4.28046 dDocent_Contig_12922 8 . A G 1227.81 . AB=0.61194;ABP=10.3026;AC=5;AF=0.625;AN=8;AO=43;CIGAR=1X;DP=69;DPB=69;DPRA=0;EPP=96.3836;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=58.814;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.953488;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1643;QR=983;RO=26;RPL=0;RPP=96.3836;RPPR=59.4686;RPR=43;RUN=1;SAF=43;SAP=96.3836;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:39:16,23:16:611:23:873:-66.9913,0,-43.5886 0/1:15:4,11:4:148:11:425:-33.3044,0,-9.16539 0/1:13:6,7:6:224:7:267:-20.4791,0,-16.6053 1/1:2:0,2:0:0:2:78:-7.40347,-0.60206,0 dDocent_Contig_12924 8 . A T 1540.21 . AB=0.114035;ABP=150.518;AC=5;AF=0.625;AN=8;AO=13;CIGAR=1X3M;DP=129;DPB=129;DPRA=0;EPP=31.2394;EPPR=85.5263;GTI=0;LEN=1;MEANALT=3.33333;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=504;QR=1453;RO=38;RPL=0;RPP=31.2394;RPPR=85.5263;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:44:5,12,21,6:5:189:12,21,6:472,812,233:-88.5302,-51.2067,-63.0849,-23.3427,0,-32.5101,-70.8895,-47.5508,-19.686,-84.5739 0|1:40:13,9,11,6:13:498:9,11,6:347,428,232:-31.2617,-6.68227,-44.8403,0,-12.374,-37.5568,-16.1189,-28.493,-21.8112,-55.1805 0|1:30:15,9,5,1:15:575:9,5,1:349,195,39:-24.1563,0,-44.4784,-12.6419,-31.157,-58.3264,-25.4658,-43.9816,-56.6255,-72.3545 0|1:15:5,4,6,0:5:191:4,6,0:147,231,0:-17.4711,-6.96701,-21.4333,0,-3.67006,-13.8737,-18.9762,-22.6375,-15.6798,-34.6494 dDocent_Contig_12926 25 . G A 191.451 . AB=0.170732;ABP=80.23;AC=2;AF=0.25;AN=8;AO=19;CIGAR=1X;DP=151;DPB=151;DPRA=6.85714;EPP=28.7251;EPPR=289.645;GTI=0;LEN=1;MEANALT=1;MQM=59.3684;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.969697;PAO=0;PQA=0;PQR=0;PRO=0;QA=703;QR=5240;RO=132;RPL=0;RPP=44.2683;RPPR=289.645;RPR=19;RUN=1;SAF=2;SAP=28.7251;SAR=17;SRF=132;SRP=289.645;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:23,6:23:901:6:226:-11.9626,0,-72.665 0/1:53:45,8:45:1797:8:291:-10.5805,0,-145.986 0/0:62:57,5:57:2264:5:186:0,-1.56416,-186.829 0/0:7:7,0:7:278:0:0:0,-2.10721,-25.3904 dDocent_Contig_12927 146 . T C 48.1004 . AB=0.235294;ABP=13.3567;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1X;DP=24;DPB=24;DPRA=1.21429;EPP=11.6962;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.75;PAIREDR=0.9;PAO=0;PQA=0;PQR=0;PRO=0;QA=138;QR=697;RO=20;RPL=0;RPP=11.6962;RPPR=46.4397;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=46.4397;SRR=20;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 0/0:7:7,0:7:244:0:0:0,-2.10721,-22.3001 0/1:7:6,1:6:209:1:35:-1.39142,0,-17.0438 0/1:10:7,3:7:244:3:103:-6.59967,0,-19.2898 dDocent_Contig_12929 123 . T C 52.658 . AB=0.5;ABP=3.0103;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=33;DPB=33;DPRA=0.666667;EPP=9.52472;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=94;QR=1068;RO=30;RPL=0;RPP=9.52472;RPPR=68.1545;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=68.1545;SRR=30;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9816 0/0:14:14,0:14:498:0:0:0,-4.21442,-45.1544 0/1:6:3,3:3:107:3:94:-6.96449,0,-8.1759 0/0:2:2,0:2:67:0:0:0,-0.60206,-6.36284 dDocent_Contig_12931 191 . T C 41.6289 . AB=0.157895;ABP=22.325;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=42;DPB=42;DPRA=2.47826;EPP=9.52472;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=121;QR=1545;RO=39;RPL=3;RPP=9.52472;RPPR=87.6977;RPR=0;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=87.6977;SRR=39;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:16,3:16:637:3:121:-5.56063,0,-51.9445 0/0:3:3,0:3:117:0:0:0,-0.90309,-10.9093 0/0:15:15,0:15:590:0:0:0,-4.51545,-53.4358 0/0:5:5,0:5:201:0:0:0,-1.50515,-18.4705 dDocent_Contig_12932 114 . T C 520.381 . AB=0.404762;ABP=6.31921;AC=4;AF=0.5;AN=8;AO=25;CIGAR=1X;DP=51;DPB=51;DPRA=16.6667;EPP=57.2971;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=45.92;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=824;QR=833;RO=26;RPL=0;RPP=57.2971;RPPR=59.4686;RPR=25;RUN=1;SAF=0;SAP=57.2971;SAR=25;SRF=0;SRP=59.4686;SRR=26;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:16,12:16:534:12:410:-28.5164,0,-39.9502 0/1:14:9,5:9:274:5:150:-7.1097,0,-20.744 1/1:8:0,8:0:0:8:264:-19.8091,-2.40824,0 0/0:1:1,0:1:25:0:0:0,-0.30103,-2.49986 dDocent_Contig_12933 30 . A T 376.771 . AB=0.421053;ABP=5.06748;AC=3;AF=0.375;AN=8;AO=16;CIGAR=1M1D1M1X2M1X1M2X2M5D1M;DP=48;DPB=42.6667;DPRA=1.26667;EPP=37.7539;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=41;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.75;PAO=0;PQA=0;PQR=0;PRO=0;QA=631;QR=1271;RO=32;RPL=0;RPP=37.7539;RPPR=72.4974;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:19:15,4:15:593:4:154:-7.74785,0,-47.9919 0|1:11:4,7:4:162:7:277:-20.5033,0,-11.6556 0|1:8:3,5:3:120:5:200:-14.8239,0,-8.77966 0|0:10:10,0:10:396:0:0:0,-3.0103,-35.9997 dDocent_Contig_12935 19 . A T 522.753 . AB=0.431818;ABP=4.78696;AC=2;AF=0.333333;AN=6;AO=19;CIGAR=1X;DP=52;DPB=52;DPRA=2.75;EPP=44.2683;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=759;QR=1329;RO=33;RPL=0;RPP=44.2683;RPPR=74.6689;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:41:23,18:23:925:18:719:-52.6941,0,-71.2126 0/0:8:8,0:8:323:0:0:0,-2.40824,-29.4384 ./.:.:.:.:.:.:.:. 0/1:3:2,1:2:81:1:40:-3.09259,0,-6.78264 dDocent_Contig_12936 25 . C A 1518.16 . AB=0.46875;ABP=3.55317;AC=6;AF=0.75;AN=8;AO=43;CIGAR=2M1X13M;DP=78;DPB=78;DPRA=0;EPP=96.3836;EPPR=33.4109;GTI=0;LEN=1;MEANALT=2.75;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=0.372093;PAIREDR=0.785714;PAO=0;PQA=0;PQR=0;PRO=0;QA=1711;QR=541;RO=14;RPL=0;RPP=96.3836;RPPR=33.4109;RPR=43;RUN=1;SAF=43;SAP=96.3836;SAR=0;SRF=14;SRP=33.4109;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:17:1,0,4,12:1:40:0,4,12:0,162,484:-49.6612,-49.9622,-53.2571,-36.6035,-39.8983,-38.6942,-10.0682,-13.3623,0,-9.74992 1|1:14:0,0,0,13:0:0:0,0,13:0,0,516:-46.3821,-46.3821,-46.3821,-46.3821,-46.3821,-46.3821,-3.91339,-3.91339,-3.91339,0 0|1:27:7,3,3,13:7:266:3,3,13:121,119,506:-39.4658,-31.5971,-52.5014,-31.7767,-43.6075,-52.6806,0,-11.8225,-12.0027,-17.8868 0|1:20:6,7,2,5:6:235:7,2,5:285,80,205:-21.7044,0,-17.2086,-16.9216,-12.7257,-35.6369,-6.58859,-2.38926,-19.3159,-24.4009 dDocent_Contig_12937 10 . A C 80.8154 . AB=0;ABP=0;AC=2;AF=0.25;AN=8;AO=2;CIGAR=1X;DP=21;DPB=21;DPRA=0.315789;EPP=7.35324;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.947368;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=760;RO=19;RPL=0;RPP=7.35324;RPPR=44.2683;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:11,0:11:438:0:0:0,-3.31133,-39.7738 1/1:2:0,2:0:0:2:82:-7.77968,-0.60206,0 0/0:7:7,0:7:281:0:0:0,-2.10721,-25.6616 0/0:1:1,0:1:41:0:0:0,-0.30103,-4.09457 dDocent_Contig_12940 41 . A G 115.886 . AB=0.333333;ABP=6.62942;AC=1;AF=0.25;AN=4;AO=5;CIGAR=1X;DP=28;DPB=28;DPRA=1.15385;EPP=13.8677;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=197;QR=925;RO=23;RPL=0;RPP=13.8677;RPPR=52.9542;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:13:13,0:13:523:0:0:0,-3.91339,-47.4175 0/1:15:10,5:10:402:5:197:-13.5886,0,-32.0238 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_12941 98 . N G 202.63 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=7;CIGAR=2X;DP=7;DPB=7;DPRA=0;EPP=18.2106;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=215;QR=0;RO=0;RPL=7;RPP=18.2106;RPPR=0;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:3:0,3:0:0:3:93:-8.67844,-0.90309,0 1|1:4:0,4:0:0:4:122:-11.2831,-1.20412,0 .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. dDocent_Contig_12942 107 . N A 97.9664 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=105;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:105:-9.79609,-0.90309,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_12943 29 . T A 40.4629 . AB=0.157895;ABP=22.325;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=111;DPB=111;DPRA=2.17143;EPP=16.0391;EPPR=231.015;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=245;QR=4243;RO=105;RPL=0;RPP=16.0391;RPPR=231.015;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=105;SRP=231.015;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:57:54,3:54:2199:3:122:0,-5.78622,-186.694 0/0:19:19,0:19:763:0:0:0,-5.71957,-68.9902 0/1:19:16,3:16:653:3:123:-5.74522,0,-53.3828 0/0:16:16,0:16:628:0:0:0,-4.81648,-56.8482 dDocent_Contig_12944 73 . C T 98.3879 . AB=0.384615;ABP=4.51363;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=91;DPB=91;DPRA=0.93617;EPP=18.2106;EPPR=183.243;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=224;QR=2832;RO=83;RPL=7;RPP=18.2106;RPPR=183.243;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=83;SRP=183.243;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:31:28,2:28:960:2:56:0,-4.04468,-81.3657 0/0:39:39,0:39:1342:0:0:0,-11.7402,-121.067 0/1:13:8,5:8:258:5:168:-11.5378,0,-19.6219 0/0:8:8,0:8:272:0:0:0,-2.40824,-24.8117 dDocent_Contig_12945 28 . C A 66.6328 . AB=0.3;ABP=6.48466;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=30;DPB=30;DPRA=1.5;EPP=9.52472;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.777778;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=1079;RO=27;RPL=0;RPP=9.52472;RPPR=61.6401;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:6:6,0:6:236:0:0:0,-1.80618,-21.6107 0/0:9:9,0:9:368:0:0:0,-2.70927,-33.4854 0/1:10:7,3:7:270:3:122:-8.36219,0,-21.6455 0/0:5:5,0:5:205:0:0:0,-1.50515,-18.835 dDocent_Contig_12947 11 . A T 1475.99 . AB=0.115385;ABP=36.4176;AC=0;AF=0;AN=6;AO=3;CIGAR=2X2M1X;DP=88;DPB=88;DPRA=0;EPP=9.52472;EPPR=63.8115;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=121;QR=1097;RO=28;RPL=0;RPP=9.52472;RPPR=63.8115;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:29:9,0,0,17:9:352:0,0,17:0,0,675:-52.8691,-55.5783,-84.5159,-55.5783,-84.5159,-84.5159,0,-28.9468,-28.9468,-23.8293 0|0:33:13,5,0,15:13:509:5,0,15:199,0,608:-46.2301,-33.7594,-74.1001,-50.1435,-75.6053,-91.991,0,-25.46,-41.8476,-37.3321 0|0:26:6,0,3,17:6:236:0,3,17:0,121,678:-54.0228,-55.829,-75.2392,-45.8543,-65.2645,-64.3614,0,-19.4049,-9.4276,-14.2874 .:.:.:.:.:.:.:. dDocent_Contig_12948 22 . C G 543.537 . AB=0.202899;ABP=108.815;AC=3;AF=0.375;AN=8;AO=28;CIGAR=1M3I3M1X3M1X;DP=138;DPB=150;DPRA=0;EPP=63.8115;EPPR=194.1;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1042;QR=3335;RO=88;RPL=0;RPP=63.8115;RPPR=194.1;RPR=28;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=88;SRP=194.1;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:42:26,6,4,6:26:978:6,4,6:212,136,240:-11.9627,-2.53597,-80.8558,-8.76764,-71.6355,-87.6891,0,-62.8872,-69.1187,-78.34 0|1:65:40,16,4,5:40:1509:16,4,5:602,145,199:-37.2798,0,-118.847,-37.4854,-111.827,-159.946,-32.9302,-107.276,-144.763,-155.095 0|1:23:16,4,0,2:16:619:4,0,2:150,0,80:-7.51346,0,-49.715,-12.3299,-50.9191,-63.2065,-5.71699,-44.3258,-56.6138,-56.0118 0|1:8:6,2,0,0:6:229:2,0,0:78,0,0:-4.99523,0,-18.5672,-6.80141,-19.1693,-25.5831,-6.80141,-19.1693,-25.5831,-25.5831 dDocent_Contig_12949 38 . A C 3504.61 . AB=0.775362;ABP=93.8974;AC=5;AF=0.625;AN=8;AO=109;CIGAR=1X;DP=140;DPB=140;DPRA=0;EPP=239.701;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.889908;PAIREDR=0.903226;PAO=0;PQA=0;PQR=0;PRO=0;QA=4403;QR=1222;RO=31;RPL=0;RPP=239.701;RPPR=70.3259;RPR=109;RUN=1;SAF=109;SAP=239.701;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:49:12,37:12:487:37:1493:-119.862,0,-29.431 0/1:26:4,22:4:137:22:884:-72.0436,0,-4.83466 0/1:63:15,48:15:598:48:1946:-156.362,0,-35.1906 1/1:2:0,2:0:0:2:80:-7.59179,-0.60206,0 dDocent_Contig_12950 35 . G A 3672.09 . AB=0.0657439;ABP=476.384;AC=0;AF=0;AN=8;AO=19;CIGAR=1M1I12M1X9M1X18M;DP=289;DPB=262.5;DPRA=0;EPP=44.2683;EPPR=63.8115;GTI=0;LEN=1;MEANALT=12.25;MQM=60;MQMR=60;NS=4;NUMALT=9;ODDS=1.11022e-16;PAIRED=0.947368;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=674;QR=1059;RO=28;RPL=0;RPP=44.2683;RPPR=63.8115;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:79:0,2,15,0,7,8,4,4,9,27:0:0:2,15,0,7,8,4,4,9,27:79,595,0,276,255,136,133,348,1072:-137.242,-130.741,-130.139,-88.2592,-81.7579,-83.7438,-137.242,-130.741,-88.2592,-137.242,-115.157,-108.656,-66.1736,-115.157,-113.049,-116.721,-110.221,-67.7402,-116.721,-94.6372,-114.313,-127.293,-120.792,-78.3109,-127.293,-105.208,-106.773,-126.089,-126.484,-119.983,-77.5018,-126.484,-104.399,-105.964,-116.535,-125.28,-108.656,-102.155,-59.6724,-108.656,-86.5707,-88.1365,-98.7073,-97.8984,-105.947,-48.9896,-42.488,0,-48.9896,-26.9028,-28.4718,-39.0419,-38.2325,-20.401,-40.8618 0|0:112:16,8,3,9,2,7,4,28,0,23:16:606:8,3,9,2,7,4,28,0,23:293,116,352,79,263,132,970,0,919:-99.6553,-80.5377,-127.817,-94.9435,-120.697,-143.727,-75.5271,-101.281,-115.686,-122.505,-97.9702,-123.723,-138.129,-118.713,-147.055,-82.9259,-108.679,-123.085,-103.669,-126.112,-130.506,-94.7273,-120.48,-134.886,-115.47,-137.912,-122.868,-143.21,-26.0158,-51.7688,-66.1739,-46.7579,-69.2005,-54.1567,-65.9583,-67.2731,-104.472,-130.225,-144.631,-125.215,-147.657,-132.613,-144.414,-75.7019,-154.159,-28.7686,-54.5233,-68.9294,-49.5123,-71.9562,-56.9115,-68.7135,0,-78.458,-71.5343 0|0:58:12,7,6,0,2,2,2,1,0,21:12:453:7,6,0,2,2,2,1,0,21:269,240,0,80,80,68,35,0,847:-66.2168,-47.7492,-82.7674,-50.0583,-65.1037,-85.3782,-69.8291,-84.8747,-87.1844,-106.955,-63.2385,-78.284,-80.5937,-100.365,-99.7626,-63.2385,-78.284,-80.5937,-100.365,-93.774,-99.7626,-64.8565,-79.9016,-82.2112,-101.982,-95.3912,-95.3912,-101.38,-66.9823,-82.0277,-84.3374,-104.108,-97.5176,-97.5176,-99.1347,-103.807,-69.8291,-84.8747,-87.1844,-106.955,-100.365,-100.365,-101.982,-104.108,-106.955,0,-15.0458,-17.3546,-37.1281,-30.5367,-30.5367,-32.1558,-34.2811,-37.1281,-30.8065 0|0:40:0,2,3,0,5,2,3,3,2,18:0:0:2,3,0,5,2,3,3,2,18:81,119,0,195,76,99,96,76,677:-71.493,-64.8119,-64.2098,-61.6948,-55.0134,-60.7917,-71.493,-64.8119,-61.6948,-71.493,-55.4606,-48.779,-45.6618,-55.4606,-53.9555,-65.2593,-58.5781,-55.461,-65.2593,-49.2267,-64.6573,-64.1916,-57.5106,-54.3937,-64.1916,-48.1598,-57.9582,-63.2885,-63.7632,-57.0822,-53.9652,-63.7632,-47.7312,-57.5297,-56.4627,-62.8601,-65.2594,-58.5782,-55.4611,-65.2594,-49.2268,-59.0257,-57.9583,-57.5299,-64.6574,-16.0376,-9.3541,-6.23622,-16.0376,0,-9.80272,-8.74009,-8.31049,-9.80285,-10.6191 dDocent_Contig_12952 21 . A T 264.26 . AB=0.232143;ABP=37.909;AC=3;AF=0.375;AN=8;AO=14;CIGAR=1X;DP=66;DPB=66;DPRA=0;EPP=33.4109;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=43.8462;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.596154;PAO=0;PQA=0;PQR=0;PRO=0;QA=555;QR=1993;RO=52;RPL=0;RPP=33.4109;RPPR=115.927;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:16,4:16:598:4:164:-9.1293,0,-38.7916 0/1:23:16,7:16:609:7:283:-18.9199,0,-38.3483 0/1:13:11,2:11:438:2:81:-3.77234,0,-24.1384 0/0:10:9,1:9:348:1:27:0,-0.310517,-20.9661 dDocent_Contig_12954 9 . C A 90.1998 . AB=0.5;ABP=3.0103;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=61;DPB=61;DPRA=0.648649;EPP=13.8677;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.946429;PAO=0;PQA=0;PQR=0;PRO=0;QA=181;QR=1987;RO=56;RPL=0;RPP=13.8677;RPPR=124.613;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:16:15,1:15:519:1:39:0,-0.919915,-43.1355 0/0:21:21,0:21:779:0:0:0,-6.32163,-70.4355 0/0:16:16,0:16:535:0:0:0,-4.81648,-48.464 0/1:8:4,4:4:154:4:142:-10.7188,0,-11.8252 dDocent_Contig_12955 46 . T C 612.894 . AB=0.320513;ABP=24.8364;AC=2;AF=0.25;AN=8;AO=27;CIGAR=1X;DP=148;DPB=148;DPRA=0;EPP=61.6401;EPPR=265.758;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.991736;PAO=0;PQA=0;PQR=0;PRO=0;QA=1054;QR=4830;RO=121;RPL=0;RPP=61.6401;RPPR=265.758;RPR=27;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=121;SRP=265.758;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:49:48,1:48:1927:1:41:0,-10.6559,-169.534 0/1:41:22,19:22:878:19:732:-53.8504,0,-66.9881 0/1:37:31,6:31:1227:6:240:-10.837,0,-99.5584 0/0:21:20,1:20:798:1:41:0,-2.22706,-68.043 dDocent_Contig_12956 17 . C T 283.763 . AB=0.323529;ABP=12.2071;AC=1;AF=0.166667;AN=6;AO=11;CIGAR=1X;DP=106;DPB=106;DPRA=0.944444;EPP=26.8965;EPPR=209.3;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=442;QR=3800;RO=95;RPL=0;RPP=26.8965;RPPR=209.3;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=95;SRP=209.3;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:34:23,11:23:916:11:442:-29.8992,0,-72.5086 0/0:61:61,0:61:2438:0:0:0,-18.3628,-219.568 0/0:11:11,0:11:446:0:0:0,-3.31133,-40.496 ./.:.:.:.:.:.:.:. dDocent_Contig_12957 24 . G A 192.764 . AB=0.285714;ABP=14.1779;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=51;DPB=51;DPRA=2.43478;EPP=20.3821;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=324;QR=1706;RO=43;RPL=0;RPP=20.3821;RPPR=96.3836;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:11,0:11:441:0:0:0,-3.31133,-40.0436 0/1:28:20,8:20:794:8:324:-21.1004,0,-63.3492 0/0:12:12,0:12:471:0:0:0,-3.61236,-42.736 ./.:.:.:.:.:.:.:. dDocent_Contig_12958 55 . A C 37.8617 . AB=0.285714;ABP=5.80219;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X;DP=25;DPB=25;DPRA=1.16667;EPP=7.35324;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=80;QR=929;RO=23;RPL=2;RPP=7.35324;RPPR=52.9542;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:1:1,0:1:37:0:0:0,-0.30103,-3.69783 0/0:14:14,0:14:566:0:0:0,-4.21442,-51.2832 0/1:7:5,2:5:203:2:80:-5.48436,0,-16.5458 0/0:3:3,0:3:123:0:0:0,-0.90309,-11.4648 dDocent_Contig_12959 23 . C T 131.449 . AB=0.233333;ABP=21.5402;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=57;DPB=57;DPRA=3.33333;EPP=18.2106;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=0.96;PAO=0;PQA=0;PQR=0;PRO=0;QA=258;QR=1940;RO=50;RPL=0;RPP=18.2106;RPPR=111.584;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:23,7:23:895:7:258:-14.5427,0,-71.8183 0/0:18:18,0:18:703:0:0:0,-5.41854,-63.5984 0/0:6:6,0:6:220:0:0:0,-1.80618,-20.1493 0/0:3:3,0:3:122:0:0:0,-0.90309,-11.3725 dDocent_Contig_12960 9 . A G 134.46 . AB=0.304348;ABP=10.6577;AC=2;AF=0.25;AN=8;AO=7;CIGAR=1X3M1X2M1X;DP=86;DPB=86;DPRA=0.365079;EPP=18.2106;EPPR=172.385;GTI=0;LEN=1;MEANALT=1;MQM=42;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=267;QR=3002;RO=78;RPL=0;RPP=18.2106;RPPR=172.385;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=78;SRP=172.385;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:34:34,0:34:1305:0:0:0,-10.235,-117.736 0|0:29:28,0:28:1078:0:0:0,-8.42884,-96.9158 0|1:12:8,4:8:308:4:149:-9.67433,0,-24.4688 0|1:11:8,3:8:311:3:118:-7.16966,0,-25.0421 dDocent_Contig_12963 24 . T C 462.867 . AB=0.19685;ABP=104.386;AC=3;AF=0.375;AN=8;AO=25;CIGAR=1X;DP=136;DPB=136;DPRA=4.7037;EPP=57.2971;EPPR=244.044;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=0.990991;PAO=0;PQA=0;PQR=0;PRO=0;QA=987;QR=4415;RO=111;RPL=0;RPP=57.2971;RPPR=244.044;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=111;SRP=244.044;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:56:42,14:42:1648:14:555:-33.4323,0,-131.683 0/1:45:40,5:40:1616:5:201:-4.92454,0,-132.121 0/1:26:20,6:20:803:6:231:-13.3277,0,-64.7602 0/0:9:9,0:9:348:0:0:0,-2.70927,-31.6734 dDocent_Contig_12964 9 . A G 308.518 . AB=0.382353;ABP=7.09778;AC=3;AF=0.375;AN=8;AO=13;CIGAR=1X;DP=39;DPB=39;DPRA=2.26667;EPP=31.2394;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=504;QR=1002;RO=26;RPL=0;RPP=31.2394;RPPR=59.4686;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:9,3:9:350:3:117:-7.29802,0,-28.249 0/1:10:5,5:5:190:5:193:-14.7312,0,-14.4564 0/1:12:7,5:7:272:5:194:-14.2205,0,-21.2349 0/0:5:5,0:5:190:0:0:0,-1.50515,-17.4667 dDocent_Contig_12965 10 . T G 3135.3 . AB=0.784091;ABP=64.6999;AC=5;AF=0.625;AN=8;AO=98;CIGAR=1X1M6I2M;DP=118;DPB=268;DPRA=0;EPP=215.815;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3829;QR=715;RO=18;RPL=0;RPP=215.815;RPPR=42.0968;RPR=98;RUN=1;SAF=98;SAP=215.815;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:30:0,29:0:0:29:1132:-101.805,-8.72987,0 0|1:18:4,14:4:157:14:543:-43.795,0,-9.08975 0|1:50:9,41:9:360:41:1605:-129.654,0,-17.7118 0|1:20:5,14:5:198:14:549:-43.674,0,-12.1122 dDocent_Contig_12966 9 . A G 687.768 . AB=0.0761905;ABP=166.822;AC=0;AF=0;AN=8;AO=8;CIGAR=1X2M1X5M;DP=114;DPB=114;DPRA=0;EPP=20.3821;EPPR=157.185;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=318;QR=2797;RO=71;RPL=0;RPP=20.3821;RPPR=157.185;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=71;SRP=157.185;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:37:18,5,5,9:18:714:5,5,9:198,189,351:-23.4314,-12.5503,-69.8271,-13.3656,-55.8467,-70.6388,0,-42.4844,-43.2972,-56.0727 0|0:33:25,2,0,6:25:975:2,0,6:80,0,237:-11.9729,-12.9073,-92.4394,-19.4987,-93.0415,-99.6322,0,-73.5381,-80.129,-78.3228 0|0:35:21,1,0,13:21:835:1,0,13:40,0,511:-35.6998,-38.7259,-107.178,-42.0215,-107.479,-110.775,0,-65.4532,-68.7484,-64.835 0|0:9:7,0,0,2:7:273:0,0,2:0,0,82:-5.07041,-7.17762,-29.6009,-7.17762,-29.6009,-29.6009,0,-22.8283,-22.8283,-22.2262 dDocent_Contig_12967 125 . C T 44.8576 . AB=0.230769;ABP=11.1951;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=22;DPB=22;DPRA=4.33333;EPP=9.52472;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=105;QR=681;RO=19;RPL=0;RPP=9.52472;RPPR=44.2683;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=44.2683;SRR=19;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:10,3:10:359:3:105:-5.88255,0,-28.7398 0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6639 0/0:1:1,0:1:37:0:0:0,-0.30103,-3.69783 0/0:1:1,0:1:37:0:0:0,-0.30103,-3.69783 dDocent_Contig_12968 109 . C A 76.3641 . AB=0.217391;ABP=18.9659;AC=2;AF=0.25;AN=8;AO=5;CIGAR=1X;DP=25;DPB=25;DPRA=11.5;EPP=13.8677;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=175;QR=676;RO=20;RPL=0;RPP=13.8677;RPPR=46.4397;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=46.4397;SRR=20;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:10,1:10:328:1:35:-0.187299,0,-26.5275 0/1:12:8,4:8:278:4:140:-9.33257,0,-21.7456 0/0:1:1,0:1:35:0:0:0,-0.30103,-3.49863 0/0:1:1,0:1:35:0:0:0,-0.30103,-3.49863 dDocent_Contig_12969 107 . N C 383.075 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=12;CIGAR=1X;DP=12;DPB=12;DPRA=0;EPP=29.068;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=409;QR=0;RO=0;RPL=0;RPP=29.068;RPPR=0;RPR=12;RUN=1;SAF=0;SAP=29.068;SAR=12;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:70:-6.6474,-0.60206,0 1/1:8:0,8:0:0:8:270:-24.6296,-2.40824,0 1/1:2:0,2:0:0:2:69:-6.55266,-0.60206,0 dDocent_Contig_12971 25 . T C 928.959 . AB=0.397727;ABP=11.0053;AC=4;AF=0.5;AN=8;AO=35;CIGAR=1X1M;DP=88;DPB=88;DPRA=0;EPP=70.5741;EPPR=51.2702;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.971429;PAIREDR=0.734694;PAO=0;PQA=0;PQR=0;PRO=0;QA=1385;QR=1938;RO=49;RPL=0;RPP=79.0118;RPPR=109.412;RPR=35;RUN=1;SAF=34;SAP=70.5741;SAR=1;SRF=41;SRP=51.2702;SRR=8;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:30:10,0,19:10:393:0,19:0,740:-57.7787,-60.789,-93.1145,0,-32.3093,-26.5898 0|1:26:19,3,4:19:740:3,4:115,158:-7.28863,-3.57603,-63.4849,0,-51.3855,-59.6177 0|1:25:19,0,6:19:766:0,6:0,245:-14.9037,-20.6233,-83.7591,0,-63.5424,-61.7362 0|1:7:1,0,6:1:39:0,6:0,242:-20.0499,-20.3509,-23.5549,0,-3.59553,-1.78935 dDocent_Contig_12972 7 . T A 41.4065 . AB=0.1;ABP=44.7026;AC=3;AF=0.375;AN=8;AO=4;CIGAR=1X;DP=49;DPB=49;DPRA=1.72222;EPP=11.6962;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=152;QR=1721;RO=45;RPL=0;RPP=11.6962;RPPR=100.727;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:17:17,0:17:654:0:0:0,-5.11751,-59.1959 0/1:30:27,3:27:1028:3:114:-1.60132,0,-83.797 0/0:1:1,0:1:39:0:0:0,-0.30103,-3.89656 1/1:1:0,1:0:0:1:38:-3.79727,-0.30103,0 dDocent_Contig_12973 163 . C A 59.0056 . AB=0.25;ABP=9.52472;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=36;DPB=36;DPRA=6.2;EPP=11.6962;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=157;QR=1145;RO=32;RPL=4;RPP=11.6962;RPPR=72.4974;RPR=0;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=72.4974;SRR=32;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:9,3:9:283:3:117:-7.29785,0,-22.158 0/0:19:18,1:18:672:1:40:0,-1.72389,-56.8139 0/0:4:4,0:4:153:0:0:0,-1.20412,-14.1417 0/0:1:1,0:1:37:0:0:0,-0.30103,-3.69783 dDocent_Contig_12974 14 . C A 95.6464 . AB=0.307692;ABP=7.18621;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=24;DPB=24;DPRA=3.54545;EPP=11.6962;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.8;PAO=0;PQA=0;PQR=0;PRO=0;QA=161;QR=812;RO=20;RPL=0;RPP=11.6962;RPPR=46.4397;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:9,4:9:364:4:161:-10.9619,0,-29.211 0/0:7:7,0:7:287:0:0:0,-2.10721,-26.2052 0/0:3:3,0:3:120:0:0:0,-0.90309,-11.1873 0/0:1:1,0:1:41:0:0:0,-0.30103,-4.09457 dDocent_Contig_12976 24 . A G 343.614 . AB=0.333333;ABP=9.52472;AC=5;AF=0.625;AN=8;AO=13;CIGAR=1X;DP=31;DPB=31;DPRA=0;EPP=31.2394;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.692308;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=515;QR=715;RO=18;RPL=0;RPP=31.2394;RPPR=42.0968;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:6,4:6:235:4:149:-10.7603,0,-18.507 0/1:12:10,2:10:401:2:81:-4.07337,0,-32.8368 0/1:5:2,3:2:79:3:121:-9.77484,0,-5.99209 1/1:4:0,4:0:0:4:164:-15.1499,-1.20412,0 dDocent_Contig_12977 119 . T G 391.591 . AB=0.353846;ABP=15.0703;AC=3;AF=0.375;AN=8;AO=23;CIGAR=1X;DP=75;DPB=75;DPRA=2.16667;EPP=52.9542;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=702;QR=1422;RO=51;RPL=0;RPP=52.9542;RPPR=113.755;RPR=23;RUN=1;SAF=0;SAP=52.9542;SAR=23;SRF=0;SRP=113.755;SRR=51;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:10:9,0:9:237:0:0:0,-2.70927,-21.3475 0/1:43:27,16:27:728:16:467:-29.3649,0,-52.8328 0/1:10:7,3:7:215:3:101:-6.4133,0,-16.6415 0/1:12:8,4:8:242:4:134:-8.7788,0,-18.4642 dDocent_Contig_12978 55 . A T 75.6687 . AB=0.428571;ABP=3.32051;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=30;DPB=30;DPRA=0.913043;EPP=9.52472;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.666667;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=1059;RO=27;RPL=3;RPP=9.52472;RPPR=61.6401;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:12:12,0:12:479:0:0:0,-3.61236,-43.4611 0/1:7:4,3:4:162:3:122:-9.26528,0,-12.8597 0/0:10:10,0:10:380:0:0:0,-3.0103,-34.548 0/0:1:1,0:1:38:0:0:0,-0.30103,-3.79727 dDocent_Contig_12980 7 . T G 706.951 . AB=0.531915;ABP=3.42611;AC=4;AF=0.5;AN=8;AO=25;CIGAR=1X14M;DP=71;DPB=68.8;DPRA=0;EPP=57.2971;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=714;QR=1343;RO=34;RPL=0;RPP=57.2971;RPPR=76.8404;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:24:13,11,0:13:516:11,0:377,0:-27.0334,0,-39.5644,-30.9467,-42.8758,-73.4552 0|1:27:16,0,11:16:628:0,11:0,336:-22.4027,-27.2192,-78.9193,0,-52.0408,-48.7295 0|1:13:2,0,10:2:80:0,10:0,258:-19.6675,-20.2696,-26.8826,0,-6.73654,-3.72624 0|1:7:3,0,4:3:119:0,4:0,120:-8.98748,-9.89057,-19.7279,0,-10.1923,-8.98818 dDocent_Contig_12981 110 . T C 925.673 . AB=0.578947;ABP=6.09608;AC=5;AF=0.625;AN=8;AO=38;CIGAR=1X;DP=62;DPB=62;DPRA=0;EPP=85.5263;EPPR=46.8017;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.958333;PAO=0;PQA=0;PQR=0;PRO=0;QA=1264;QR=793;RO=24;RPL=0;RPP=85.5263;RPPR=55.1256;RPR=38;RUN=1;SAF=0;SAP=85.5263;SAR=38;SRF=1;SRP=46.8017;SRR=23;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:35:9,26:9:313:26:859:-67.0784,0,-17.971 0/1:14:12,2:12:398:2:68:-2.24346,0,-31.9219 0/1:8:3,5:3:82:5:166:-12.8589,0,-5.24253 1/1:5:0,5:0:0:5:171:-15.7265,-1.50515,0 dDocent_Contig_12983 107 . N T 576.72 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=18;CIGAR=1X;DP=18;DPB=18;DPRA=0;EPP=42.0968;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=619;QR=0;RO=0;RPL=0;RPP=42.0968;RPPR=0;RPR=18;RUN=1;SAF=0;SAP=42.0968;SAR=18;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:4:0,4:0:0:4:140:-12.9449,-1.20412,0 1/1:2:0,2:0:0:2:69:-6.55266,-0.60206,0 1/1:7:0,7:0:0:7:235:-21.4783,-2.10721,0 1/1:5:0,5:0:0:5:175:-16.0937,-1.50515,0 dDocent_Contig_12985 26 . C T 246.151 . AB=0.268293;ABP=22.1298;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=54;DPB=54;DPRA=1.57692;EPP=26.8965;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=441;QR=1717;RO=43;RPL=0;RPP=26.8965;RPPR=96.3836;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 0/0:13:13,0:13:522:0:0:0,-3.91339,-47.3256 0/1:36:29,7:29:1154:7:281:-14.824,0,-93.2987 0/1:5:1,4:1:41:4:160:-13.2783,0,-2.58942 dDocent_Contig_12986 18 . A C 518.744 . AB=0.4;ABP=6.48466;AC=3;AF=0.375;AN=8;AO=20;CIGAR=1X;DP=64;DPB=64;DPRA=2.71429;EPP=46.4397;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=758;QR=1674;RO=44;RPL=0;RPP=46.4397;RPPR=98.5551;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:109:-10.1673,-0.90309,0 0/1:40:24,16:24:916:16:609:-43.1043,0,-70.713 0/0:7:7,0:7:269:0:0:0,-2.10721,-24.5736 0/0:14:13,1:13:489:1:40:0,-0.218741,-40.3578 dDocent_Contig_12987 62 . C T 108.145 . AB=0.227273;ABP=17.2236;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=66;DPB=66;DPRA=1.5;EPP=13.8677;EPPR=135.47;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=205;QR=2456;RO=61;RPL=5;RPP=13.8677;RPPR=135.47;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=61;SRP=135.47;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:17,5:17:694:5:205:-12.2123,0,-56.1647 0/0:31:31,0:31:1253:0:0:0,-9.33193,-113.038 0/0:9:9,0:9:359:0:0:0,-2.70927,-32.6722 0/0:4:4,0:4:150:0:0:0,-1.20412,-13.8651 dDocent_Contig_12988 11 . A G 419.149 . AB=0.283582;ABP=30.2671;AC=4;AF=0.5;AN=8;AO=19;CIGAR=2X;DP=67;DPB=67;DPRA=0;EPP=44.2683;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=753;QR=1912;RO=48;RPL=0;RPP=44.2683;RPPR=107.241;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:46:33,13:33:1321:13:513:-32.6694,0,-105.307 0|1:7:4,3:4:160:3:119:-8.98818,0,-12.6766 0|1:7:5,2:5:194:2:81:-5.57852,0,-15.7233 0|1:7:6,1:6:237:1:40:-1.88847,0,-19.5958 dDocent_Contig_12989 140 . G A 199.077 . AB=0.3;ABP=13.4334;AC=2;AF=0.25;AN=8;AO=9;CIGAR=1X;DP=35;DPB=35;DPRA=6;EPP=22.5536;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=351;QR=1058;RO=26;RPL=0;RPP=22.5536;RPPR=59.4686;RPR=9;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=59.4686;SRR=26;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:8,6:8:325:6:234:-17.2131,0,-25.4052 0/1:16:13,3:13:530:3:117:-6.0921,0,-43.2301 0/0:2:2,0:2:81:0:0:0,-0.60206,-7.68573 0/0:3:3,0:3:122:0:0:0,-0.90309,-11.3725 dDocent_Contig_12992 113 . A G 191.418 . AB=0.571429;ABP=3.32051;AC=3;AF=0.375;AN=8;AO=8;CIGAR=1X;DP=30;DPB=30;DPRA=1.33333;EPP=20.3821;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=278;QR=759;RO=22;RPL=0;RPP=20.3821;RPPR=50.7827;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=50.7827;SRR=22;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:14:13,1:13:439:1:34:0,-0.815509,-36.4313 0/1:7:3,4:3:107:4:141:-10.9298,0,-7.8748 0/0:6:6,0:6:213:0:0:0,-1.80618,-19.5163 1/1:3:0,3:0:0:3:103:-9.6096,-0.90309,0 dDocent_Contig_12993 24 . A T 260.502 . AB=0.177778;ABP=84.1751;AC=3;AF=0.375;AN=8;AO=16;CIGAR=1X;DP=95;DPB=95;DPRA=6;EPP=37.7539;EPPR=174.557;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=620;QR=3122;RO=79;RPL=0;RPP=37.7539;RPPR=174.557;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=79;SRP=174.557;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:35:32,3:32:1242:3:117:-0.37253,0,-101.502 0/1:41:30,11:30:1200:11:432:-26.8875,0,-95.9302 0/1:14:12,2:12:484:2:71:-2.52716,0,-39.697 0/0:5:5,0:5:196:0:0:0,-1.50515,-18.0131 dDocent_Contig_12994 10 . T C 3037.21 . AB=0.780488;ABP=87.0622;AC=4;AF=0.5;AN=8;AO=96;CIGAR=1X;DP=123;DPB=123;DPRA=0;EPP=211.472;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3855;QR=1062;RO=27;RPL=0;RPP=211.472;RPPR=61.6401;RPR=96;RUN=1;SAF=96;SAP=211.472;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:42:12,30:12:453:30:1200:-95.6287,0,-28.4559 0/1:47:6,41:6:245:41:1649:-134.487,0,-8.28106 0/1:19:4,15:4:164:15:599:-48.5277,0,-9.43033 0/1:15:5,10:5:200:10:407:-32.4751,0,-13.8641 dDocent_Contig_12995 22 . G A 2028.04 . AB=0.654206;ABP=25.1106;AC=4;AF=0.5;AN=8;AO=70;CIGAR=2X2M1X2M;DP=107;DPB=107;DPRA=0;EPP=155.013;EPPR=65.983;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2660;QR=1119;RO=29;RPL=0;RPP=155.013;RPPR=65.983;RPR=70;RUN=1;SAF=70;SAP=155.013;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:34:8,26,0,0:8:315:26,0,0:992,0,0:-79.3505,0,-18.4811,-81.7587,-26.3078,-107.676,-81.7587,-26.3078,-107.676,-107.676 0|1:35:11,18,0,6:11:435:18,0,6:682,0,221:-52.6065,0,-30.3983,-55.9178,-35.8168,-91.7232,-37.8499,-17.7558,-73.6555,-71.8494 0|1:22:7,15,0,0:7:255:15,0,0:569,0,0:-44.925,0,-16.6741,-47.0323,-21.1896,-67.853,-47.0323,-21.1896,-67.853,-67.853 0|1:16:3,11,2,0:3:114:11,2,0:417,67,0:-33.3204,0,-6.06458,-28.8046,-3.96825,-37.5518,-34.2235,-9.37591,-38.1538,-43.5739 dDocent_Contig_12997 168 . C T 603.124 . AB=0.317073;ABP=26.8435;AC=3;AF=0.375;AN=8;AO=26;CIGAR=1X;DP=84;DPB=84;DPRA=13.6667;EPP=51.1168;EPPR=128.956;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.961538;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=993;QR=2197;RO=58;RPL=25;RPP=51.1168;RPPR=128.956;RPR=1;RUN=1;SAF=0;SAP=59.4686;SAR=26;SRF=0;SRP=128.956;SRR=58;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:47:38,9:38:1436:9:342:-16.9793,0,-115.346 0/1:16:13,3:13:495:3:104:-4.881,0,-40.0751 0/1:19:5,14:5:187:14:547:-43.8496,0,-11.4691 0/0:2:2,0:2:79:0:0:0,-0.60206,-7.49724 dDocent_Contig_12998 131 . T G 1505.13 . AB=0.523438;ABP=3.62103;AC=4;AF=0.5;AN=8;AO=67;CIGAR=1X1M1X;DP=128;DPB=128;DPRA=0;EPP=148.499;EPPR=131.127;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2166;QR=2044;RO=59;RPL=0;RPP=148.499;RPPR=131.127;RPR=67;RUN=1;SAF=0;SAP=148.499;SAR=67;SRF=0;SRP=131.127;SRR=59;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:50:12,38:12:421:38:1292:-101.527,0,-23.1741 0|1:19:9,10:9:308:10:324:-23.756,0,-22.3328 0|1:37:27,9:27:945:9:275:-14.0201,0,-74.3432 0|1:22:11,10:11:370:10:275:-18.6078,0,-27.2105 dDocent_Contig_13000 10 . T A 420.18 . AB=0.363636;ABP=6.56362;AC=3;AF=0.375;AN=8;AO=14;CIGAR=1X;DP=58;DPB=58;DPRA=0.933333;EPP=33.4109;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=548;QR=1762;RO=44;RPL=0;RPP=33.4109;RPPR=98.5551;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:18:18,0:18:725:0:0:0,-5.41854,-65.5751 0/1:22:14,8:14:548:8:327:-23.1774,0,-43.037 1/1:6:0,6:0:0:6:221:-20.2385,-1.80618,0 0/0:12:12,0:12:489:0:0:0,-3.61236,-44.3613 dDocent_Contig_13001 61 . A G 196.596 . AB=0.321429;ABP=10.7656;AC=3;AF=0.375;AN=8;AO=9;CIGAR=1X;DP=32;DPB=32;DPRA=2.33333;EPP=22.5536;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.869565;PAO=0;PQA=0;PQR=0;PRO=0;QA=347;QR=885;RO=23;RPL=9;RPP=22.5536;RPPR=52.9542;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:5:2,3:2:78:3:116:-9.31255,0,-5.89832 0/1:13:8,5:8:305:5:192:-13.7366,0,-23.8965 0/1:10:9,1:9:346:1:39:-0.886264,0,-28.4891 0/0:4:4,0:4:156:0:0:0,-1.20412,-14.4173 dDocent_Contig_13002 93 . G A 246.195 . AB=0.366667;ABP=7.64277;AC=1;AF=0.125;AN=8;AO=12;CIGAR=1X;DP=80;DPB=80;DPRA=25.6667;EPP=29.068;EPPR=150.67;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=425;QR=2345;RO=68;RPL=12;RPP=29.068;RPPR=150.67;RPR=0;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=68;SRP=150.67;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:47:46,1:46:1584:1:36:0,-10.5501,-139.245 0/1:30:19,11:19:654:11:389:-26.3176,0,-50.1498 0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672 0/0:1:1,0:1:35:0:0:0,-0.30103,-3.49863 dDocent_Contig_13003 7 . T C 942.196 . AB=0.428571;ABP=6.73282;AC=4;AF=0.5;AN=8;AO=36;CIGAR=1X;DP=84;DPB=84;DPRA=0;EPP=72.7387;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.888889;PAIREDR=0.666667;PAO=0;PQA=0;PQR=0;PRO=0;QA=1394;QR=1834;RO=48;RPL=0;RPP=81.1833;RPPR=107.241;RPR=36;RUN=1;SAF=35;SAP=72.7387;SAR=1;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:13,7:13:499:7:272:-18.8266,0,-39.2374 0/1:41:22,19:22:847:19:735:-54.1387,0,-64.2107 0/1:18:11,7:11:412:7:270:-19.247,0,-32.0104 0/1:5:2,3:2:76:3:117:-9.40523,0,-5.70952 dDocent_Contig_13004 1 . N G 75.9266 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=80;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:80:-7.59157,-0.60206,0 dDocent_Contig_13005 59 . A G 329.875 . AB=0.357143;ABP=10.4553;AC=4;AF=0.5;AN=8;AO=15;CIGAR=1X;DP=42;DPB=42;DPRA=0;EPP=20.5268;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.962963;PAO=0;PQA=0;PQR=0;PRO=0;QA=573;QR=1069;RO=27;RPL=15;RPP=35.5824;RPPR=61.6401;RPR=0;RUN=1;SAF=13;SAP=20.5268;SAR=2;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:8:3,5:3:120:5:201:-16.0627,0,-8.77907 0/1:17:11,6:11:438:6:242:-17.0394,0,-34.6555 0/1:15:12,3:12:470:3:89:-3.78211,0,-38.1257 0/1:2:1,1:1:41:1:41:-3.49251,0,-3.49251 dDocent_Contig_13006 12 . T A 1266.15 . AB=0.108696;ABP=64.1892;AC=0;AF=0;AN=8;AO=5;CIGAR=1X3M1X3M;DP=190;DPB=190;DPRA=0;EPP=13.8677;EPPR=124.613;GTI=0;LEN=1;MEANALT=4;MQM=22;MQMR=60;NS=4;NUMALT=4;ODDS=0;PAIRED=0;PAIREDR=0.910714;PAO=0;PQA=0;PQR=0;PRO=0;QA=110;QR=2192;RO=56;RPL=0;RPP=13.8677;RPPR=124.613;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:45:8,0,7,6,24:8:316:0,7,6,24:0,275,243,585:-37.2947,-39.7029,-65.7323,-28.012,-54.0448,-51.9376,-19.6352,-45.6748,-33.9848,-43.8686,0,-26.0376,-14.3999,-5.97392,-18.8129 0|0:46:10,5,5,5,21:10:393:5,5,5,21:110,197,196,521:-31.8565,-27.8282,-58.6839,-26.5107,-51.8386,-57.3676,-18.7266,-44.0584,-42.7415,-49.5902,0,-25.3608,-24.0407,-16.2413,-26.0538 0|0:74:30,0,8,5,31:30:1165:0,8,5,31:0,303,198,796:-46.2073,-55.2382,-151.018,-42.8677,-138.651,-136.242,-38.9234,-134.716,-122.348,-133.211,0,-95.7984,-83.4533,-79.4975,-86.4665 0|0:25:8,0,3,0,14:8:318:0,3,0,14:0,114,0,323:-18.6546,-21.0629,-47.3057,-16.0588,-42.3112,-41.4081,-21.0629,-47.3057,-42.3112,-47.3057,0,-26.3107,-21.3585,-26.3107,-22.0963 dDocent_Contig_13007 112 . G A 3386.8 . AB=0.697183;ABP=50.9662;AC=6;AF=0.75;AN=8;AO=127;CIGAR=2X;DP=170;DPB=170;DPRA=0;EPP=278.787;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1.25;MQM=52.4803;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4236;QR=1294;RO=40;RPL=0;RPP=278.787;RPPR=89.8692;RPR=127;RUN=1;SAF=0;SAP=278.787;SAR=127;SRF=0;SRP=89.8692;SRR=40;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:48:16,0,32:16:556:0,32:0,1076:-82.3577,-87.1741,-132.383,0,-45.552,-35.9191 0|1:74:23,0,51:23:703:0,51:0,1707:-130.769,-137.693,-194.011,0,-56.6325,-41.28 1|1:28:0,0,28:0:0:0,28:0,926:-83.0639,-83.0639,-83.0639,-8.42884,-8.42884,0 1|1:20:1,3,16:1:35:3,16:105,527:-47.8853,-39.6398,-41.5856,-5.69547,0,-3.72673 dDocent_Contig_13009 57 . G C 77.9257 . AB=0.171429;ABP=35.8306;AC=2;AF=0.25;AN=8;AO=6;CIGAR=1X;DP=49;DPB=49;DPRA=2.5;EPP=16.0391;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.976744;PAO=0;PQA=0;PQR=0;PRO=0;QA=226;QR=1708;RO=43;RPL=6;RPP=16.0391;RPPR=96.3836;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:13:13,0:13:518:0:0:0,-3.91339,-46.9633 0/1:10:9,1:9:364:1:41:-1.08427,0,-30.1141 0/1:25:20,5:20:785:5:185:-9.47801,0,-63.4412 0/0:1:1,0:1:41:0:0:0,-0.30103,-4.09457 dDocent_Contig_13010 116 . T G 31.4258 . AB=0.333333;ABP=4.45795;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X;DP=52;DPB=52;DPRA=0.391304;EPP=7.35324;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=57.14;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.56;PAO=0;PQA=0;PQR=0;PRO=0;QA=70;QR=1715;RO=50;RPL=0;RPP=7.35324;RPPR=111.584;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=111.584;SRR=50;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:17:17,0:17:575:0:0:0,-5.11751,-50.3343 0/0:23:23,0:23:792:0:0:0,-6.92369,-69.956 0/1:6:4,2:4:140:2:70:-4.84122,0,-11.1387 0/0:6:6,0:6:208:0:0:0,-1.80618,-19.0578 dDocent_Contig_13011 37 . G T 139.918 . AB=0.25;ABP=18.2106;AC=2;AF=0.25;AN=8;AO=7;CIGAR=1X;DP=34;DPB=34;DPRA=4.66667;EPP=18.2106;EPPR=51.1168;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=58.0769;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.961538;PAO=0;PQA=0;PQR=0;PRO=0;QA=279;QR=1024;RO=26;RPL=0;RPP=18.2106;RPPR=59.4686;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=25;SRP=51.1168;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:8,2:8:311:2:80:-4.58149,0,-25.3393 0/0:1:1,0:1:40:0:0:0,-0.30103,-0.999609 0/1:18:12,5:12:472:5:199:-12.7966,0,-37.3415 0/0:5:5,0:5:201:0:0:0,-1.50515,-18.4705 dDocent_Contig_13013 98 . N A 130.282 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=4;CIGAR=2X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=134;QR=0;RO=0;RPL=4;RPP=11.6962;RPPR=0;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. 1|1:2:0,2:0:0:2:66:-6.26818,-0.60206,0 .:.:.:.:.:.:.:. 1|1:2:0,2:0:0:2:68:-6.45793,-0.60206,0 dDocent_Contig_13014 36 . G T 704.81 . AB=0.3125;ABP=27.4394;AC=3;AF=0.375;AN=8;AO=25;CIGAR=3M1X8M;DP=80;DPB=80;DPRA=0;EPP=57.2971;EPPR=87.6977;GTI=0;LEN=1;MEANALT=2.25;MQM=60;MQMR=60;NS=4;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=998;QR=1531;RO=39;RPL=0;RPP=57.2971;RPPR=87.6977;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:38:20,4,0,0,14:20:786:4,0,0,14:159,0,0,563:-40.3803,-33.3112,-96.7509,-46.4009,-97.955,-111.046,-46.4009,-97.955,-111.046,-111.046,0,-51.5539,-64.6454,-64.6454,-60.431 0|1:14:7,0,0,0,6:7:280:0,0,0,6:0,0,0,240:-17.6801,-19.7873,-42.8541,-19.7873,-42.8541,-42.8541,-19.7873,-42.8541,-42.8541,-42.8541,0,-23.0827,-23.0827,-23.0827,-21.2765 0|0:18:7,0,3,5,3:7:269:0,3,5,3:0,120,202,115:-14.6176,-16.7248,-38.8331,-14.7372,-36.8142,-35.9112,0,-22.1566,-20.1542,-20.6515,-7.26323,-29.388,-27.3789,-12.7007,-28.485 0|1:10:5,0,3,0,2:5:196:0,3,0,2:0,119,0,80:-5.20086,-6.70601,-22.9071,-4.81435,-20.9268,-20.0237,-6.70601,-22.9071,-20.9268,-22.9071,0,-16.2942,-14.3344,-16.2942,-15.6921 dDocent_Contig_13015 79 . A G 1684.29 . AB=0.515873;ABP=3.28604;AC=3;AF=0.5;AN=6;AO=65;CIGAR=1X;DP=126;DPB=126;DPRA=0;EPP=144.156;EPPR=135.47;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2342;QR=2051;RO=61;RPL=65;RPP=144.156;RPPR=135.47;RPR=0;RUN=1;SAF=65;SAP=144.156;SAR=0;SRF=0;SRP=135.47;SRR=61;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 0/1:5:1,4:1:35:4:147:-12.0847,0,-1.99348 0/1:67:33,34:33:1091:34:1207:-88.7562,0,-78.3149 0/1:54:27,27:27:925:27:988:-72.9807,0,-67.3059 dDocent_Contig_13017 107 . N T 142.481 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=140;QR=0;RO=0;RPL=0;RPP=11.6962;RPPR=0;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1:0,1:0:0:1:35:-3.49863,-0.30103,0 ./.:.:.:.:.:.:.:. 1/1:1:0,1:0:0:1:35:-3.49863,-0.30103,0 1/1:2:0,2:0:0:2:70:-6.6474,-0.60206,0 dDocent_Contig_13018 159 . C T 77.7418 . AB=0.222222;ABP=9.04217;AC=3;AF=0.375;AN=8;AO=4;CIGAR=1X;DP=18;DPB=18;DPRA=1.57143;EPP=3.0103;EPPR=33.4109;GTI=0;LEN=1;MEANALT=1;MQM=32;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=157;QR=562;RO=14;RPL=0;RPP=11.6962;RPPR=33.4109;RPR=4;RUN=1;SAF=2;SAP=3.0103;SAR=2;SRF=0;SRP=33.4109;SRR=14;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:7,2:7:279:2:79:-3.23505,0,-22.771 0/0:1:1,0:1:40:0:0:0,-0.30103,-3.99568 0/0:6:6,0:6:243:0:0:0,-1.80618,-22.2482 1/1:2:0,2:0:0:2:78:-5.92997,-0.60206,0 dDocent_Contig_13019 79 . T A 672.586 . AB=0.45283;ABP=4.03458;AC=5;AF=0.625;AN=8;AO=25;CIGAR=2X;DP=54;DPB=54;DPRA=0;EPP=57.2971;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=967;QR=1155;RO=29;RPL=25;RPP=57.2971;RPPR=65.983;RPR=0;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:26:15,11:15:591:11:429:-31.1381,0,-45.7016 0|1:20:13,7:13:523:7:276:-19.1893,0,-41.3975 0|1:7:1,6:1:41:6:222:-18.226,0,-1.98736 1|1:1:0,1:0:0:1:40:-3.99568,-0.30103,0 dDocent_Contig_13020 25 . T C 327.738 . AB=0.444444;ABP=3.73412;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X;DP=45;DPB=45;DPRA=0.75;EPP=29.068;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=485;QR=1318;RO=33;RPL=0;RPP=29.068;RPPR=74.6689;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:18:18,0:18:720:0:0:0,-5.41854,-65.1257 0/1:23:14,9:14:557:9:363:-26.11,0,-43.5468 0/1:4:1,3:1:41:3:122:-10.1684,0,-2.89045 ./.:.:.:.:.:.:.:. dDocent_Contig_13021 42 . G T 105.317 . AB=0.277778;ABP=10.7311;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=48;DPB=48;DPRA=1.8;EPP=13.8677;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=192;QR=1660;RO=43;RPL=0;RPP=13.8677;RPPR=96.3836;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:20:20,0:20:770:0:0:0,-6.0206,-69.6267 0/1:18:13,5:13:504:5:192:-12.2306,0,-40.2897 0/0:7:7,0:7:269:0:0:0,-2.10721,-24.5744 0/0:3:3,0:3:117:0:0:0,-0.90309,-10.9104 dDocent_Contig_13022 10 . G A 63.9865 . AB=0.126582;ABP=98.6925;AC=3;AF=0.375;AN=8;AO=10;CIGAR=1X;DP=114;DPB=114;DPRA=0.752381;EPP=24.725;EPPR=228.843;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=383;QR=4074;RO=104;RPL=0;RPP=24.725;RPPR=228.843;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=104;SRP=228.843;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:35:35,0:35:1369:0:0:0,-10.536,-123.467 0/1:48:43,5:43:1700:5:201:-4.02108,0,-138.778 0/1:17:14,3:14:563:3:101:-4.29898,0,-45.8954 0/1:14:12,2:12:442:2:81:-3.47131,0,-35.8948 dDocent_Contig_13023 107 . N T 221.129 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=7;CIGAR=1X;DP=7;DPB=7;DPRA=0;EPP=18.2106;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=235;QR=0;RO=0;RPL=0;RPP=18.2106;RPPR=0;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:66:-6.26836,-0.60206,0 1/1:5:0,5:0:0:5:169:-15.5429,-1.50515,0 dDocent_Contig_13024 7 . T C 219.789 . AB=0;ABP=0;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=2M9I3M1X3M4D1M1X2M;DP=48;DPB=49;DPRA=1.09677;EPP=24.725;EPPR=61.6401;GTI=0;LEN=1;MEANALT=2;MQM=27;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=270;QR=1053;RO=27;RPL=0;RPP=24.725;RPPR=61.6401;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:17:0,10:0:0:10:270:-21.5017,-3.0103,0 0|0:24:21,0:21:823:0:0:0,-6.32163,-73.9973 0|0:7:6,0:6:230:0:0:0,-1.80618,-20.6776 .:.:.:.:.:.:.:. dDocent_Contig_13025 22 . G A 4702.35 . AB=0.897059;ABP=189.246;AC=6;AF=0.75;AN=8;AO=143;CIGAR=1X;DP=157;DPB=157;DPRA=0;EPP=313.531;EPPR=33.4109;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.993007;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5706;QR=563;RO=14;RPL=0;RPP=313.531;RPPR=33.4109;RPR=143;RUN=1;SAF=143;SAP=313.531;SAR=0;SRF=14;SRP=33.4109;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:50:6,44:6:242:44:1748:-142.497,0,-7.10545 0/1:86:8,78:8:321:78:3111:-254.187,0,-3.36896 1/1:11:0,11:0:0:11:441:-40.0445,-3.31133,0 1/1:10:0,10:0:0:10:406:-36.9,-3.0103,0 dDocent_Contig_13027 73 . T A 292.97 . AB=0.454545;ABP=3.40511;AC=4;AF=0.5;AN=8;AO=13;CIGAR=1X;DP=34;DPB=34;DPRA=0.925926;EPP=23.2217;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=426;QR=557;RO=21;RPL=13;RPP=31.2394;RPPR=48.6112;RPR=0;RUN=1;SAF=12;SAP=23.2217;SAR=1;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:5:3,2:3:65:2:65:-4.66753,0,-4.56119 1/1:3:0,3:0:0:3:102:-9.51695,-0.90309,0 0/0:9:9,0:9:255:0:0:0,-2.70927,-23.2304 0/1:17:9,8:9:237:8:259:-18.5098,0,-16.4738 dDocent_Contig_13029 133 . A G 117.512 . AB=0.454545;ABP=3.20771;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=29;DPB=29;DPRA=1.83333;EPP=13.8677;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=179;QR=759;RO=24;RPL=0;RPP=13.8677;RPPR=55.1256;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=55.1256;SRR=24;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:6,5:6:190:5:179:-13.1489,0,-14.1008 0/0:9:9,0:9:294:0:0:0,-2.70927,-26.7794 0/0:2:2,0:2:49:0:0:0,-0.60206,-4.65475 0/0:7:7,0:7:226:0:0:0,-2.10721,-20.6569 dDocent_Contig_13030 43 . T C 1575.93 . AB=0.580645;ABP=8.26386;AC=4;AF=0.5;AN=8;AO=54;CIGAR=1X;DP=93;DPB=93;DPRA=0;EPP=120.27;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2129;QR=1569;RO=39;RPL=0;RPP=120.27;RPPR=87.6977;RPR=54;RUN=1;SAF=54;SAP=120.27;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:10,11:10:401:11:436:-33.2701,0,-30.1251 0/1:17:13,4:13:525:4:162:-9.84924,0,-42.4786 0/1:48:13,35:13:521:35:1371:-109.195,0,-32.7875 0/1:7:3,4:3:122:4:160:-12.6762,0,-9.26528 dDocent_Contig_13032 15 . G T 233.58 . AB=0.322581;ABP=11.486;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=41;DPB=41;DPRA=1.55;EPP=24.725;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=394;QR=1251;RO=31;RPL=0;RPP=24.725;RPPR=70.3259;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:10:10,0:10:402:0:0:0,-3.0103,-36.5401 0/1:10:4,6:4:161:6:232:-18.2355,0,-11.8646 0/1:21:17,4:17:688:4:162:-8.64533,0,-55.9279 ./.:.:.:.:.:.:.:. dDocent_Contig_13033 13 . T A 324.447 . AB=0.351351;ABP=10.1116;AC=3;AF=0.375;AN=8;AO=13;CIGAR=1X;DP=47;DPB=47;DPRA=1.23333;EPP=31.2394;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=518;QR=1370;RO=34;RPL=0;RPP=31.2394;RPPR=76.8404;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:14,9:14:560:9:358:-25.6541,0,-43.8187 0/1:10:9,1:9:364:1:38:-0.786969,0,-30.1141 0/0:10:10,0:10:405:0:0:0,-3.0103,-36.8098 0/1:4:1,3:1:41:3:122:-10.1684,0,-2.89045 dDocent_Contig_13034 83 . G C 1032.7 . AB=0.442308;ABP=6.01695;AC=4;AF=0.5;AN=8;AO=46;CIGAR=1X;DP=104;DPB=104;DPRA=0;EPP=102.898;EPPR=128.956;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1563;QR=1967;RO=58;RPL=46;RPP=102.898;RPPR=128.956;RPR=0;RUN=1;SAF=46;SAP=102.898;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:49:38,11:38:1308:11:382:-19.9639,0,-103.271 0/1:19:10,9:10:313:9:312:-22.6965,0,-22.7543 0/1:29:7,22:7:242:22:739:-58.0934,0,-13.3878 0/1:7:3,4:3:104:4:130:-9.91445,0,-7.59588 dDocent_Contig_13035 94 . T C 1022.5 . AB=0.569444;ABP=6.02623;AC=5;AF=0.625;AN=8;AO=44;CIGAR=1X;DP=75;DPB=75;DPRA=0;EPP=98.5551;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1422;QR=718;RO=31;RPL=44;RPP=98.5551;RPPR=70.3259;RPR=0;RUN=1;SAF=44;SAP=98.5551;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:2,8:2:54:8:264:-21.0724,0,-2.11929 0/1:24:11,13:11:230:13:417:-30.6159,0,-13.6829 0/1:38:18,20:18:434:20:641:-46.5537,0,-27.8583 1/1:3:0,3:0:0:3:100:-9.33037,-0.90309,0 dDocent_Contig_13036 11 . G A 726.975 . AB=0.638889;ABP=21.1059;AC=4;AF=0.5;AN=8;AO=69;CIGAR=2X;DP=108;DPB=108;DPRA=0;EPP=152.842;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=18.0435;MQMR=59.9231;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.0512821;PAO=0;PQA=0;PQR=0;PRO=0;QA=2779;QR=1518;RO=39;RPL=0;RPP=152.842;RPPR=87.6977;RPR=69;RUN=1;SAF=69;SAP=152.842;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:35:23,12:23:903:12:479:-9.05268,0,-71.047 0|1:52:11,41:11:416:41:1655:-51.1192,0,-22.1339 0|1:5:2,3:2:79:3:122:-3.52835,0,-5.99248 0|1:16:3,13:3:120:13:523:-16.392,0,-6.37142 dDocent_Contig_13037 7 . T A 140.953 . AB=0.142857;ABP=65.0524;AC=2;AF=0.25;AN=8;AO=9;CIGAR=1X2M1X1M2X;DP=70;DPB=70;DPRA=0;EPP=22.5536;EPPR=126.784;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=6.93889e-18;PAIRED=0.888889;PAIREDR=0.947368;PAO=0;PQA=0;PQR=0;PRO=0;QA=337;QR=2194;RO=57;RPL=0;RPP=22.5536;RPPR=126.784;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:32:28,1,3:28:1056:1,3:39,116:-1.09695,-6.31908,-92.5387,0,-83.3105,-85.6137 0|0:14:13,1,0:13:514:1,0:38,0:0,-0.417151,-42.8118,-3.91339,-43.1128,-46.2282 0|1:17:11,6,0:11:427:6,0:228,0:-15.7673,0,-33.6667,-19.0787,-35.4729,-54.169 0|1:7:5,1,0:5:197:1,0:32,0:-1.10318,0,-16.0181,-2.60833,-16.3192,-18.8902 dDocent_Contig_13038 33 . C T 257.213 . AB=0;ABP=0;AC=2;AF=0.25;AN=8;AO=7;CIGAR=1X2M1X;DP=33;DPB=33;DPRA=0.807692;EPP=18.2106;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=275;QR=1027;RO=26;RPL=0;RPP=18.2106;RPPR=59.4686;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:7:0,7:0:0:7:275:-25.1191,-2.10721,0 0|0:18:18,0:18:706:0:0:0,-5.41854,-63.8684 0|0:5:5,0:5:202:0:0:0,-1.50515,-18.5621 0|0:3:3,0:3:119:0:0:0,-0.90309,-11.0954 dDocent_Contig_13039 11 . C A 52.7419 . AB=0.214286;ABP=12.937;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=65;DPB=65;DPRA=0.823529;EPP=9.52472;EPPR=137.642;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=120;QR=2492;RO=62;RPL=0;RPP=9.52472;RPPR=137.642;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:18:18,0:18:734:0:0:0,-5.41854,-66.3832 0/0:31:31,0:31:1240:0:0:0,-9.33193,-111.865 0/1:14:11,3:11:436:3:120:-6.97289,0,-35.3794 0/0:2:2,0:2:82:0:0:0,-0.60206,-7.77968 dDocent_Contig_13040 29 . T A 31.3503 . AB=0.142857;ABP=26.2761;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=33;DPB=33;DPRA=3.5;EPP=9.52472;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=121;QR=1188;RO=30;RPL=0;RPP=9.52472;RPPR=68.1545;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:7:7,0:7:271:0:0:0,-2.10721,-24.7552 0/1:21:18,3:18:715:3:121:-4.95857,0,-58.3567 0/0:5:5,0:5:202:0:0:0,-1.50515,-18.5619 ./.:.:.:.:.:.:.:. dDocent_Contig_13041 81 . A G 55.9589 . AB=0.375;ABP=4.09604;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=88;DPB=88;DPRA=0.3;EPP=9.52472;EPPR=187.585;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.988235;PAO=0;PQA=0;PQR=0;PRO=0;QA=104;QR=2983;RO=85;RPL=3;RPP=9.52472;RPPR=187.585;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=85;SRP=187.585;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:16:16,0:16:570:0:0:0,-4.81648,-51.6326 0/0:57:57,0:57:1990:0:0:0,-17.1587,-179.37 0/1:8:5,3:5:176:3:104:-7.29485,0,-13.7768 0/0:7:7,0:7:247:0:0:0,-2.10721,-22.5731 dDocent_Contig_13042 7 . T A 32.9704 . AB=0.25;ABP=7.35324;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X;DP=18;DPB=18;DPRA=2.4;EPP=7.35324;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.9375;PAO=0;PQA=0;PQR=0;PRO=0;QA=78;QR=612;RO=16;RPL=0;RPP=7.35324;RPPR=37.7539;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:6:6,0:6:233:0:0:0,-1.80618,-21.3401 0/0:2:2,0:2:77:0:0:0,-0.60206,-7.21929 0/0:2:2,0:2:78:0:0:0,-0.60206,-7.40347 0/1:8:6,2:6:224:2:78:-4.99523,0,-18.111 dDocent_Contig_13043 122 . G A 34.1048 . AB=0.5;ABP=3.0103;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X3M1X;DP=37;DPB=37;DPRA=0.242424;EPP=7.35324;EPPR=76.8404;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=8.67362e-19;PAIRED=0;PAIREDR=0.411765;PAO=0;PQA=0;PQR=0;PRO=0;QA=66;QR=1078;RO=34;RPL=0;RPP=7.35324;RPPR=76.8404;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=76.8404;SRR=34;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:25:25,0:25:772:0:0:0,-7.52575,-69.7699 0|1:4:1,2:1:35:2:66:-5.1753,0,-2.36061 0|0:8:8,0:8:271:0:0:0,-2.40824,-24.721 .:.:.:.:.:.:.:. dDocent_Contig_13044 30 . A G 126.169 . AB=0.173913;ABP=24.253;AC=5;AF=0.625;AN=8;AO=6;CIGAR=1X;DP=25;DPB=25;DPRA=0;EPP=16.0391;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.5;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=241;QR=747;RO=19;RPL=0;RPP=16.0391;RPPR=44.2683;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:9,1:9:349:1:40:-0.985379,0,-28.7506 0/1:4:2,2:2:82:2:79:-6.29351,0,-6.57556 0/1:9:8,1:8:316:1:41:-1.3853,0,-26.0924 1/1:2:0,2:0:0:2:81:-7.68573,-0.60206,0 dDocent_Contig_13045 107 . N A 160.937 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=5;CIGAR=1X;DP=5;DPB=5;DPRA=0;EPP=13.8677;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=8.07091;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=175;QR=0;RO=0;RPL=0;RPP=13.8677;RPPR=0;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:5:0,5:0:0:5:175:-16.0936,-1.50515,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_13047 12 . G A 83.2645 . AB=0.235294;ABP=13.3567;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=54;DPB=54;DPRA=0.918919;EPP=11.6962;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=162;QR=2006;RO=50;RPL=0;RPP=11.6962;RPPR=111.584;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:13,4:13:530:4:162:-9.84924,0,-42.9289 0/0:33:33,0:33:1315:0:0:0,-9.93399,-118.615 0/0:4:4,0:4:161:0:0:0,-1.20412,-14.8753 ./.:.:.:.:.:.:.:. dDocent_Contig_13048 56 . A T 199.885 . AB=0.183099;ABP=64.9431;AC=3;AF=0.375;AN=8;AO=14;CIGAR=1X;DP=115;DPB=115;DPRA=0;EPP=33.4109;EPPR=222.329;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=546;QR=3880;RO=101;RPL=14;RPP=33.4109;RPPR=222.329;RPR=0;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=101;SRP=222.329;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:46:40,6:40:1519:6:227:-6.94134,0,-123.112 0/0:44:43,1:43:1655:1:39:0,-9.34875,-145.285 0/1:17:13,4:13:503:4:161:-9.75797,0,-40.4954 0/1:8:5,3:5:203:3:119:-8.68715,0,-16.2448 dDocent_Contig_13049 180 . G C 372.043 . AB=0.565217;ABP=3.86001;AC=2;AF=0.25;AN=8;AO=13;CIGAR=1X;DP=36;DPB=36;DPRA=1.76923;EPP=31.2394;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=519;QR=922;RO=23;RPL=13;RPP=31.2394;RPPR=52.9542;RPR=0;RUN=1;SAF=0;SAP=31.2394;SAR=13;SRF=0;SRP=52.9542;SRR=23;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:9:9,0:9:365:0:0:0,-2.70927,-33.2149 0/1:8:7,1:7:283:1:41:-1.68633,0,-23.4353 0/1:15:3,12:3:114:12:478:-38.8535,0,-6.11464 0/0:4:4,0:4:160:0:0:0,-1.20412,-14.7836 dDocent_Contig_13050 36 . T G 77.6596 . AB=0.5;ABP=3.0103;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=28;DPB=28;DPRA=0.545455;EPP=9.52472;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=119;QR=1002;RO=25;RPL=0;RPP=9.52472;RPPR=57.2971;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:6:3,3:3:121:3:119:-9.28883,0,-9.47381 0/0:9:9,0:9:352:0:0:0,-2.70927,-32.0344 0/0:13:13,0:13:529:0:0:0,-3.91339,-47.9563 ./.:.:.:.:.:.:.:. dDocent_Contig_13051 53 . A G 209.867 . AB=0.218182;ABP=40.9518;AC=3;AF=0.375;AN=8;AO=12;CIGAR=1X;DP=70;DPB=70;DPRA=1.22222;EPP=29.068;EPPR=128.956;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.586207;PAO=0;PQA=0;PQR=0;PRO=0;QA=448;QR=2139;RO=58;RPL=0;RPP=29.068;RPPR=128.956;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:16,4:16:598:4:151:-7.93636,0,-48.1327 0/1:12:6,6:6:222:6:219:-16.445,0,-16.7253 0/0:15:15,0:15:544:0:0:0,-4.51545,-49.2848 0/1:23:21,2:21:775:2:78:-0.479783,0,-63.1478 dDocent_Contig_13052 170 . A C 558.849 . AB=0.45;ABP=3.87889;AC=5;AF=0.625;AN=8;AO=18;CIGAR=1X3M;DP=55;DPB=55;DPRA=0.888889;EPP=42.0968;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=721;QR=1035;RO=26;RPL=18;RPP=42.0968;RPPR=59.4686;RPR=0;RUN=1;SAF=0;SAP=42.0968;SAR=18;SRF=0;SRP=59.4686;SRR=26;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:15:13,0,2,0:13:513:0,2,0:0,75,0:0,-3.91339,-46.3613,-2.23764,-44.842,-44.2399,-3.91339,-46.3613,-44.842,-46.3613 1|1:14:1,7,0,6:1:40:7,0,6:277,0,244:-21.8311,-16.838,-18.0249,-22.1321,-20.1321,-25.4377,-1.87352,0,-5.20356,-3.39738 0|1:20:12,0,0,8:12:482:0,0,8:0,0,317:-22.8723,-26.4847,-66.2057,-26.4847,-66.2057,-66.2057,0,-40.1189,-40.1189,-37.7107 1|1:6:0,0,2,4:0:0:0,2,4:0,79,160:-15.0427,-15.0427,-15.0427,-13.5793,-13.5793,-12.9772,-1.67656,-1.67656,0,-0.472437 dDocent_Contig_13055 24 . T G 629.796 . AB=0.298851;ABP=33.5856;AC=4;AF=0.5;AN=8;AO=26;CIGAR=1X;DP=87;DPB=87;DPRA=0;EPP=59.4686;EPPR=135.47;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.961538;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1046;QR=2445;RO=61;RPL=0;RPP=59.4686;RPPR=135.47;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=61;SRP=135.47;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:11,12:11:441:12:487:-37.2578,0,-33.1218 0/1:33:26,7:26:1052:7:284:-15.9994,0,-85.0357 0/1:21:15,6:15:596:6:234:-15.1073,0,-47.6546 0/1:10:9,1:9:356:1:41:-1.08427,0,-29.3894 dDocent_Contig_13056 150 . G T 112.855 . AB=0.5;ABP=3.0103;AC=2;AF=0.25;AN=8;AO=2;CIGAR=1M1X;DP=20;DPB=21.5;DPRA=1.14286;EPP=7.35324;EPPR=29.068;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=475;RO=12;RPL=0;RPP=7.35324;RPPR=29.068;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=29.068;SRR=12;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:6:5,0,0:5:199:0,0:0,0:0,-1.50515,-17.8888,-1.50515,-17.8888,-17.8888 0|1:4:1,0,2:1:39:0,2:0,81:-6.37484,-6.67587,-9.87762,0,-3.19598,-2.59392 0|1:9:5,3,0:5:196:3,0:119,0:-8.28062,0,-15.1993,-9.78577,-16.1024,-25.8986 0|0:1:1,0,0:1:41:0,0:0,0:0,-0.30103,-4.09457,-0.30103,-4.09457,-4.09457 dDocent_Contig_13057 26 . T C 68.953 . AB=0.375;ABP=4.09604;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=113;DPB=113;DPRA=0.329412;EPP=5.18177;EPPR=239.701;GTI=0;LEN=1;MEANALT=1;MQM=53;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.75;PAIREDR=0.990826;PAO=0;PQA=0;PQR=0;PRO=0;QA=155;QR=4238;RO=109;RPL=0;RPP=11.6962;RPPR=239.701;RPR=4;RUN=1;SAF=3;SAP=5.18177;SAR=1;SRF=109;SRP=239.701;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:33:33,0:33:1256:0:0:0,-9.93399,-113.305 0/0:20:19,1:19:755:1:37:0,-2.93986,-65.1916 0/0:52:52,0:52:2026:0:0:0,-15.6536,-182.55 0/1:8:5,3:5:201:3:118:-8.59427,0,-16.0629 dDocent_Contig_13058 15 . G A 207.727 . AB=0.28125;ABP=16.3106;AC=2;AF=0.25;AN=8;AO=9;CIGAR=1X;DP=39;DPB=39;DPRA=4.57143;EPP=22.5536;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.933333;PAO=0;PQA=0;PQR=0;PRO=0;QA=367;QR=1190;RO=30;RPL=0;RPP=22.5536;RPPR=68.1545;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:13,6:13:524:6:244:-16.619,0,-41.7877 0/1:13:10,3:10:384:3:123:-7.5514,0,-30.9899 0/0:3:3,0:3:120:0:0:0,-0.90309,-11.1877 0/0:4:4,0:4:162:0:0:0,-1.20412,-14.9667 dDocent_Contig_13059 46 . G A 604.906 . AB=0.511628;ABP=3.0608;AC=3;AF=0.5;AN=6;AO=22;CIGAR=1X;DP=43;DPB=43;DPRA=0;EPP=50.7827;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=865;QR=840;RO=21;RPL=0;RPP=50.7827;RPPR=48.6112;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:3,16:3:121:16:622:-50.5853,0,-5.56063 0/1:14:10,4:10:403:4:162:-10.7523,0,-32.4154 0/1:10:8,2:8:316:2:81:-4.67543,0,-25.7956 ./.:.:.:.:.:.:.:. dDocent_Contig_13060 11 . T C 146.055 . AB=0.255814;ABP=25.2805;AC=4;AF=0.5;AN=8;AO=11;CIGAR=1X;DP=43;DPB=43;DPRA=0;EPP=26.8965;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=39.2727;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.454545;PAIREDR=0.8125;PAO=0;PQA=0;PQR=0;PRO=0;QA=406;QR=1264;RO=32;RPL=0;RPP=26.8965;RPPR=72.4974;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:8:5,3:5:193:3:123:-6.88936,0,-15.3296 0/1:10:9,1:9:363:1:40:-0.635822,0,-30.024 0/1:19:15,4:15:589:4:126:-4.8596,0,-47.6176 0/1:6:3,3:3:119:3:117:-8.24971,0,-9.28883 dDocent_Contig_13061 42 . G A 1128.96 . AB=0.0728477;ABP=242.318;AC=0;AF=0;AN=8;AO=11;CIGAR=1X5M;DP=164;DPB=199.833;DPRA=3.87179;EPP=26.8965;EPPR=204.957;GTI=0;LEN=1;MEANALT=4.33333;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=398;QR=3522;RO=93;RPL=0;RPP=26.8965;RPPR=204.957;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=93;SRP=204.957;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:81:40,0,30,8:40:1529:0,30,8:0,1082,291:-76.2323,-88.2735,-213.737,0,-125.468,-116.438,-64.515,-189.98,-101.713,-187.572 0|0:46:31,3,5,2:31:1139:3,5,2:114,195,70:-6.72211,-6.69589,-98.9234,0,-83.7931,-91.6381,-10.3598,-94.1341,-87.4508,-102.882 0|0:24:10,0,13,1:10:385:0,13,1:0,470,37:-35.3385,-38.3488,-69.9693,0,-31.6245,-27.7112,-35.3212,-66.9423,-28.5989,-66.6413 0|0:13:12,0,1,0:12:469:0,1,0:0,39,0:0,-3.61236,-42.1712,-0.0168255,-38.9654,-38.6643,-3.61236,-42.1712,-38.9654,-42.1712 dDocent_Contig_13062 24 . A T 109.883 . AB=0.277778;ABP=10.7311;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=70;DPB=70;DPRA=1.03846;EPP=13.8677;EPPR=144.156;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=197;QR=2587;RO=65;RPL=0;RPP=13.8677;RPPR=144.156;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=65;SRP=144.156;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:44:44,0:44:1744:0:0:0,-13.2453,-157.182 0/1:18:13,5:13:530:5:197:-12.687,0,-42.6275 0/0:6:6,0:6:242:0:0:0,-1.80618,-22.1573 0/0:2:2,0:2:71:0:0:0,-0.60206,-6.74038 dDocent_Contig_13064 36 . A G 78.8247 . AB=0.0909091;ABP=34.9902;AC=3;AF=0.5;AN=6;AO=4;CIGAR=1X;DP=33;DPB=33;DPRA=1.33333;EPP=11.6962;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=163;QR=1156;RO=29;RPL=0;RPP=11.6962;RPPR=65.983;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:9:9,0:9:354:0:0:0,-2.70927,-32.2206 0/1:22:20,2:20:802:2:82:-1.15702,0,-65.8758 1/1:2:0,2:0:0:2:81:-7.68573,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_13065 22 . A C 67.5554 . AB=0.3;ABP=6.48466;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=39;DPB=39;DPRA=1.03448;EPP=9.52472;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=123;QR=1428;RO=36;RPL=0;RPP=9.52472;RPPR=81.1833;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:12:12,0:12:479:0:0:0,-3.61236,-43.4574 0/0:11:11,0:11:439:0:0:0,-3.31133,-39.8612 0/0:6:6,0:6:224:0:0:0,-1.80618,-20.5084 0/1:10:7,3:7:286:3:123:-8.45449,0,-23.1045 dDocent_Contig_13066 155 . T A 77.1955 . AB=0.105263;ABP=28.7251;AC=4;AF=0.5;AN=8;AO=4;CIGAR=1X;DP=34;DPB=34;DPRA=0.538462;EPP=11.6962;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=152;QR=1170;RO=30;RPL=0;RPP=11.6962;RPPR=68.1545;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=68.1545;SRR=30;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:13:13,0:13:511:0:0:0,-3.91339,-46.3357 0/1:9:8,1:8:316:1:35:-0.789359,0,-26.0948 0/1:10:9,1:9:343:1:39:-0.886264,0,-28.215 1/1:2:0,2:0:0:2:78:-7.40347,-0.60206,0 dDocent_Contig_13067 22 . A G 47.6178 . AB=0.25;ABP=9.52472;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=133;DPB=133;DPRA=1.21667;EPP=16.0391;EPPR=278.787;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=224;QR=5073;RO=127;RPL=0;RPP=16.0391;RPPR=278.787;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=127;SRP=278.787;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:61:58,3:58:2314:3:116:0,-7.54732,-197.606 0/0:38:38,0:38:1521:0:0:0,-11.4391,-137.134 0/0:22:22,0:22:874:0:0:0,-6.62266,-78.966 0/1:12:9,3:9:364:3:108:-6.46075,0,-29.5126 dDocent_Contig_13068 107 . N A 417.829 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=17;CIGAR=1X;DP=17;DPB=17;DPRA=0;EPP=39.9253;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=45.4706;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=458;QR=0;RO=0;RPL=0;RPP=39.9253;RPPR=0;RPR=17;RUN=1;SAF=0;SAP=39.9253;SAR=17;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:10:0,10:0:0:10:259:-22.8434,-3.0103,0 1/1:6:0,6:0:0:6:170:-15.5642,-1.80618,0 1/1:1:0,1:0:0:1:29:-2.89727,-0.30103,0 ./.:.:.:.:.:.:.:. dDocent_Contig_13069 133 . G A 31.0492 . AB=0.285714;ABP=5.80219;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X;DP=41;DPB=41;DPRA=0.617647;EPP=7.35324;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=48;MQMR=59.5385;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.846154;PAO=0;PQA=0;PQR=0;PRO=0;QA=70;QR=1342;RO=39;RPL=0;RPP=7.35324;RPPR=87.6977;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=87.6977;SRR=39;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:7:5,2:5:175:2:70:-4.50245,0,-13.9797 0/0:17:17,0:17:578:0:0:0,-5.11751,-52.3423 0/0:13:13,0:13:450:0:0:0,-3.91339,-40.8308 0/0:4:4,0:4:139:0:0:0,-1.20412,-12.851 dDocent_Contig_13070 9 . A T 433.761 . AB=0.56;ABP=3.79203;AC=3;AF=0.375;AN=8;AO=16;CIGAR=1X;DP=42;DPB=42;DPRA=13.6667;EPP=37.7539;EPPR=43.4331;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=0.846154;PAO=0;PQA=0;PQR=0;PRO=0;QA=612;QR=969;RO=26;RPL=0;RPP=37.7539;RPPR=59.4686;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=24;SRP=43.4331;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:15:14,1:14:534:1:39:0,-0.618885,-44.5064 0/1:25:11,14:11:398:14:534:-40.8761,0,-28.63 1/1:1:0,1:0:0:1:39:-3.89656,-0.30103,0 0/0:1:1,0:1:37:0:0:0,-0.30103,-3.69783 dDocent_Contig_13072 17 . C T 905.895 . AB=0.384615;ABP=13.5336;AC=4;AF=0.5;AN=8;AO=35;CIGAR=1X;DP=91;DPB=91;DPRA=0;EPP=79.0118;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1377;QR=2208;RO=56;RPL=0;RPP=79.0118;RPPR=124.613;RPR=35;RUN=1;SAF=35;SAP=79.0118;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:13,13:13:520:13:499:-37.4237,0,-39.3215 0/1:23:13,10:13:487:10:394:-28.8944,0,-37.2377 0/1:26:17,9:17:684:9:364:-25.2982,0,-54.0617 0/1:16:13,3:13:517:3:120:-6.37121,0,-42.0597 dDocent_Contig_13073 7 . T C 66.6506 . AB=0.1;ABP=30.8051;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X3M1X2M1I1M1X2M1D1M;DP=41;DPB=41;DPRA=3.63636;EPP=7.35324;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=68;QR=1310;RO=34;RPL=0;RPP=7.35324;RPPR=76.8404;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:20:18,2,0:18:693:2,0:68,0:-0.435036,0,-56.6803,-5.85358,-57.2824,-62.7917 0|0:6:6,0,0:6:234:0,0:0,0:0,-1.80618,-21.4309,-1.80618,-21.4309,-21.4309 0|0:10:6,0,3:6:225:0,3:0,123:-8.36091,-10.1671,-28.5785,0,-18.4165,-17.5134 0|0:5:4,0,0:4:158:0,0:0,0:0,-1.20412,-14.194,-1.20412,-14.194,-14.194 dDocent_Contig_13075 98 . N C 191.511 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=6;CIGAR=1X;DP=6;DPB=6;DPRA=0;EPP=16.0391;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=8.76405;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=209;QR=0;RO=0;RPL=6;RPP=16.0391;RPPR=0;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:6:0,6:0:0:6:209:-19.1511,-1.80618,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_13076 37 . T C 386.111 . AB=0.348837;ABP=11.5447;AC=2;AF=0.25;AN=8;AO=17;CIGAR=1X;DP=80;DPB=80;DPRA=2.09091;EPP=39.9253;EPPR=139.813;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.984127;PAO=0;PQA=0;PQR=0;PRO=0;QA=684;QR=2458;RO=63;RPL=0;RPP=39.9253;RPPR=139.813;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=63;SRP=139.813;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:38:24,14:24:936:14:562:-39.4838,0,-73.1039 0/0:26:24,2:24:926:2:82:0,-0.0471021,-75.8625 0/0:11:11,0:11:438:0:0:0,-3.31133,-39.7752 0/1:5:4,1:4:158:1:40:-2.49053,0,-13.0935 dDocent_Contig_13077 118 . G C 938.183 . AB=0.553571;ABP=4.40625;AC=5;AF=0.625;AN=8;AO=48;CIGAR=1X;DP=74;DPB=74;DPRA=0;EPP=107.241;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=39.75;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.291667;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1653;QR=861;RO=26;RPL=0;RPP=107.241;RPPR=59.4686;RPR=48;RUN=1;SAF=0;SAP=107.241;SAR=48;SRF=0;SRP=59.4686;SRR=26;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:18,12:18:591:12:416:-14.0282,0,-44.4687 0/1:24:6,18:6:210:18:608:-41.1948,0,-12.0177 1/1:18:1,17:1:25:17:595:-41.1664,-2.91868,0 0/1:2:1,1:1:35:1:34:-2.79685,0,-2.89657 dDocent_Contig_13078 202 . A T 819.142 . AB=0.666667;ABP=14.5915;AC=3;AF=0.5;AN=6;AO=32;CIGAR=1X;DP=48;DPB=48;DPRA=0;EPP=72.4974;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1121;QR=584;RO=16;RPL=32;RPP=72.4974;RPPR=37.7539;RPR=0;RUN=1;SAF=0;SAP=72.4974;SAR=32;SRF=0;SRP=37.7539;SRR=16;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:6,6:6:218:6:206:-15.263,0,-16.3605 0/1:29:5,24:5:183:24:845:-67.6335,0,-8.09688 0/1:7:5,2:5:183:2:70:-4.54019,0,-14.7195 ./.:.:.:.:.:.:.:. dDocent_Contig_13079 23 . C A 276.278 . AB=0.282051;ABP=19.1015;AC=1;AF=0.125;AN=8;AO=11;CIGAR=1X;DP=79;DPB=79;DPRA=2.925;EPP=26.8965;EPPR=150.67;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=449;QR=2739;RO=68;RPL=0;RPP=26.8965;RPPR=150.67;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=68;SRP=150.67;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:39:28,11:28:1123:11:449:-29.0257,0,-89.6121 0/0:24:24,0:24:967:0:0:0,-7.22472,-87.3296 0/0:11:11,0:11:448:0:0:0,-3.31133,-40.676 0/0:5:5,0:5:201:0:0:0,-1.50515,-18.4705 dDocent_Contig_13080 31 . T G 183.876 . AB=0.2;ABP=14.7363;AC=4;AF=0.5;AN=8;AO=7;CIGAR=1X;DP=24;DPB=24;DPRA=1.26667;EPP=18.2106;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=279;QR=683;RO=17;RPL=0;RPP=18.2106;RPPR=39.9253;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:9,2:9:362:2:81:-4.3744,0,-29.6317 1/1:4:0,4:0:0:4:157:-14.5064,-1.20412,0 0/1:4:3,1:3:120:1:41:-2.89045,0,-9.98378 0/0:5:5,0:5:201:0:0:0,-1.50515,-18.4705 dDocent_Contig_13081 24 . A G 44.8163 . AB=0.4;ABP=3.44459;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X;DP=65;DPB=65;DPRA=0.25;EPP=7.35324;EPPR=139.813;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.984127;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=2529;RO=63;RPL=0;RPP=7.35324;RPPR=139.813;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=63;SRP=139.813;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:26:26,0:26:1048:0:0:0,-7.82678,-94.6114 0/0:11:11,0:11:439:0:0:0,-3.31133,-39.8657 0/0:23:23,0:23:920:0:0:0,-6.92369,-83.1057 0/1:5:3,2:3:122:2:81:-6.18058,0,-9.86734 dDocent_Contig_13082 11 . C G 1865.71 . AB=0.0413793;ABP=267.915;AC=5;AF=0.625;AN=8;AO=6;CIGAR=1X2M1X3M;DP=152;DPB=152;DPRA=0;EPP=16.0391;EPPR=120.27;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=237;QR=2115;RO=54;RPL=0;RPP=16.0391;RPPR=120.27;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:67:15,15,36,1:15:587:15,36,1:586,1373,40:-108.038,-65.0386,-108.789,0,-0.75472,-37.4284,-109.258,-110.009,-44.97,-157.222 0|1:54:23,21,6,4:23:899:21,6,4:806,236,158:-58.0991,0,-67.5879,-45.6269,-54.5158,-117.737,-52.0191,-60.9072,-106.541,-124.731 0|1:24:15,5,3,1:15:595:5,3,1:193,116,39:-11.1639,0,-47.4821,-6.15008,-39.4604,-54.2363,-12.4728,-45.7816,-51.9337,-61.1601 1|1:7:1,1,5,0:1:34:1,5,0:40,196,0:-16.3128,-13.4027,-15.851,-0.503775,0,-1.73143,-16.6139,-16.1521,-3.23658,-19.3645 dDocent_Contig_13083 44 . G A 69.3286 . AB=0.285714;ABP=8.59409;AC=2;AF=0.25;AN=8;AO=5;CIGAR=1X;DP=82;DPB=82;DPRA=0.717949;EPP=13.8677;EPPR=170.214;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=0.974026;PAO=0;PQA=0;PQR=0;PRO=0;QA=182;QR=3074;RO=77;RPL=0;RPP=13.8677;RPPR=170.214;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=77;SRP=170.214;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:42:41,1:41:1660:1:29:0,-9.7436,-146.724 0/0:26:26,0:26:1024:0:0:0,-7.82678,-92.4549 0/1:11:8,3:8:308:3:112:-7.13239,0,-24.7685 0/1:3:2,1:2:82:1:41:-3.19148,0,-6.87659 dDocent_Contig_13084 25 . T C 936.242 . AB=0.477612;ABP=3.30199;AC=3;AF=0.375;AN=8;AO=32;CIGAR=1X6M;DP=69;DPB=69;DPRA=11.1667;EPP=56.2114;EPPR=42.0968;GTI=0;LEN=1;MEANALT=2;MQM=58.9375;MQMR=60;NS=4;NUMALT=2;ODDS=6.93889e-18;PAIRED=0.90625;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1258;QR=708;RO=18;RPL=0;RPP=72.4974;RPPR=42.0968;RPR=32;RUN=1;SAF=30;SAP=56.2114;SAR=2;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:15:7,0,8:7:271:0,8:0,315:-24.1981,-26.3053,-48.5641,0,-22.6486,-20.2404 0|1:32:7,10,14:7:278:10,14:391,557:-43.947,-44.6958,-64.5794,0,-21.7027,-18.8069 0|1:20:3,7,10:3:120:7,10:276,386:-30.8756,-30.8743,-38.6559,0,-9.19279,-6.97982 0|0:2:1,1,0:1:39:1,0:40,0:0,-0.102154,-3.39666,-0.30103,-3.69769,-3.67674 dDocent_Contig_13085 9 . A G 70.9585 . AB=0.266667;ABP=10.1038;AC=1;AF=0.125;AN=8;AO=4;CIGAR=2M1X6M;DP=139;DPB=139.333;DPRA=0.362903;EPP=11.6962;EPPR=283.13;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=144;QR=5045;RO=129;RPL=0;RPP=11.6962;RPPR=283.13;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=129;SRP=283.13;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:44:41,3,0:41:1595:3,0:112,0:0,-2.79902,-133.357,-12.3422,-134.26,-143.429 0|0:45:43,0,0:43:1687:0,0:0,0:0,-12.9443,-151.815,-12.9443,-151.815,-151.815 0|0:35:34,0,0:34:1335:0,0:0,0:0,-10.235,-120.029,-10.235,-120.029,-120.029 0|1:15:11,0,4:11:428:0,4:0,144:-8.79482,-12.1061,-47.3005,0,-35.5619,-34.3577 dDocent_Contig_13086 95 . C A 37.9432 . AB=0.6;ABP=3.44459;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=41;DPB=41;DPRA=0.416667;EPP=9.52472;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=75;QR=1293;RO=38;RPL=3;RPP=9.52472;RPPR=85.5263;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:17:17,0:17:595:0:0:0,-5.11751,-53.8789 0/0:17:17,0:17:567:0:0:0,-5.11751,-51.3457 0/1:5:2,3:2:66:3:75:-5.49276,0,-4.76303 0/0:2:2,0:2:65:0:0:0,-0.60206,-6.17329 dDocent_Contig_13089 56 . T A 1280 . AB=0.25;ABP=16.0391;AC=1;AF=0.125;AN=8;AO=6;CIGAR=7M1X2M;DP=165;DPB=170;DPRA=0;EPP=16.0391;EPPR=235.358;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.850467;PAO=0;PQA=0;PQR=0;PRO=0;QA=239;QR=4110;RO=107;RPL=6;RPP=16.0391;RPPR=235.358;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=107;SRP=235.358;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:62:45,16,0:45:1723:16,0:625,0:-38.1244,0,-136.867,-51.6707,-141.684,-193.066 0|0:51:34,17,0:34:1312:17,0:658,0:-44.198,0,-103.01,-54.433,-108.127,-162.174 0|0:28:15,13,0:15:569:13,0:504,0:-37.2733,0,-43.1135,-41.7887,-47.0269,-88.4322 0|1:24:13,4,6:13:506:4,6:160,239:-15.8024,-6.51838,-46.9249,0,-28.4388,-39.8198 dDocent_Contig_13090 15 . T A 82.7609 . AB=0.333333;ABP=5.9056;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=29;DPB=29;DPRA=2.11765;EPP=11.6962;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=8.67362e-19;PAIRED=0.5;PAIREDR=0.68;PAO=0;PQA=0;PQR=0;PRO=0;QA=147;QR=1011;RO=25;RPL=0;RPP=11.6962;RPPR=57.2971;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5,0:5:203:0:0:0,-1.50515,-18.6531 0/1:12:8,4:8:319:4:147:-9.97447,0,-25.4627 0/0:11:11,0:11:448:0:0:0,-3.31133,-40.676 0/0:1:1,0:1:41:0:0:0,-0.30103,-4.09457 dDocent_Contig_13091 81 . T C 608.234 . AB=0.69697;ABP=14.1309;AC=2;AF=0.333333;AN=6;AO=23;CIGAR=1X;DP=39;DPB=39;DPRA=2.75;EPP=52.9542;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=798;QR=554;RO=16;RPL=23;RPP=52.9542;RPPR=37.7539;RPR=0;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:2,20:2:72:20:691:-55.8871,0,-0.214062 0/1:11:8,3:8:273:3:107:-6.67084,0,-21.5906 ./.:.:.:.:.:.:.:. 0/0:6:6,0:6:209:0:0:0,-1.80618,-19.1505 dDocent_Contig_13093 98 . N A 94.2427 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=101;QR=0;RO=0;RPL=3;RPP=9.52472;RPPR=0;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:101:-9.42373,-0.90309,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_13095 10 . A T 92.2155 . AB=0.189189;ABP=34.0565;AC=4;AF=0.5;AN=8;AO=7;CIGAR=1X;DP=37;DPB=37;DPRA=0;EPP=18.2106;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.285714;PAIREDR=0.933333;PAO=0;PQA=0;PQR=0;PRO=0;QA=280;QR=1196;RO=30;RPL=0;RPP=18.2106;RPPR=68.1545;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:9,1:9:363:1:41:-1.08427,0,-30.024 0/1:6:5,1:5:202:1:41:-2.28839,0,-16.7553 0/1:9:7,2:7:266:2:77:-4.59893,0,-21.5899 0/1:12:9,3:9:365:3:121:-7.66784,0,-29.6021 dDocent_Contig_13096 20 . A T 339.289 . AB=0.363636;ABP=8.34028;AC=4;AF=0.5;AN=8;AO=14;CIGAR=1M2I2M6D1M;DP=39;DPB=33.4;DPRA=2.91667;EPP=33.4109;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=46.2857;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.285714;PAIREDR=0.96;PAO=0;PQA=0;PQR=0;PRO=0;QA=538;QR=951;RO=25;RPL=0;RPP=33.4109;RPPR=57.2971;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:4:4,0:4:154:0:0:0,-1.20412,-14.2326 0|1:21:13,8:13:490:8:312:-20.0345,0,-38.1164 0|1:12:8,4:8:307:4:162:-11.3544,0,-24.3757 1|1:2:0,2:0:0:2:64:-5.93766,-0.60206,0 dDocent_Contig_13097 7 . T C 215.636 . AB=0.307692;ABP=15.538;AC=2;AF=0.25;AN=8;AO=12;CIGAR=1X1M1X1M2X;DP=72;DPB=72;DPRA=1.18182;EPP=29.068;EPPR=124.613;GTI=0;LEN=1;MEANALT=2;MQM=46.9167;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=467;QR=2174;RO=56;RPL=0;RPP=29.068;RPPR=124.613;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:31:30,0:30:1173:0:0:0,-9.0309,-105.744 0|1:16:6,9:6:236:9:350:-21.0021,0,-16.9545 0|1:23:19,3:19:726:3:117:-3.95771,0,-58.7318 0|0:2:1,0:1:39:0:0:0,-0.30103,-3.50691 dDocent_Contig_13098 45 . T C 40.2335 . AB=0.2;ABP=14.7363;AC=2;AF=0.25;AN=8;AO=4;CIGAR=1X;DP=51;DPB=51;DPRA=0.611111;EPP=11.6962;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=164;QR=1762;RO=47;RPL=0;RPP=11.6962;RPPR=105.07;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:18:17,1:17:637:1:41:0,-1.32397,-53.5692 0/0:18:18,0:18:681:0:0:0,-5.41854,-61.6228 0/1:8:7,1:7:255:1:41:-1.68633,0,-20.891 0/1:7:5,2:5:189:2:82:-5.67247,0,-15.2682 dDocent_Contig_13099 50 . A G 819.128 . AB=0.355556;ABP=19.3205;AC=3;AF=0.375;AN=8;AO=32;CIGAR=1X;DP=95;DPB=95;DPRA=6;EPP=72.4974;EPPR=139.813;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.984127;PAO=0;PQA=0;PQR=0;PRO=0;QA=1258;QR=2441;RO=63;RPL=32;RPP=72.4974;RPPR=139.813;RPR=0;RUN=1;SAF=32;SAP=72.4974;SAR=0;SRF=63;SRP=139.813;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:64:37,27:37:1424:27:1059:-76.3356,0,-109.151 0/1:19:15,4:15:572:4:158:-8.8807,0,-46.0895 0/1:7:6,1:6:242:1:41:-1.98736,0,-20.0497 0/0:5:5,0:5:203:0:0:0,-1.50515,-18.6531 dDocent_Contig_13100 30 . G A 235.996 . AB=0.333333;ABP=9.52472;AC=1;AF=0.125;AN=8;AO=11;CIGAR=1X;DP=80;DPB=80;DPRA=1.96296;EPP=26.8965;EPPR=152.842;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=446;QR=2710;RO=69;RPL=0;RPP=26.8965;RPPR=152.842;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=69;SRP=152.842;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:18,9:18:706:9:364:-24.9966,0,-55.7331 0/0:18:18,0:18:723:0:0:0,-5.41854,-65.396 0/0:26:24,2:24:918:2:82:0,-0.0471021,-75.1376 0/0:9:9,0:9:363:0:0:0,-2.70927,-33.0338 dDocent_Contig_13104 127 . C T 33.4901 . AB=0.333333;ABP=4.45795;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X;DP=26;DPB=26;DPRA=0.9;EPP=7.35324;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=69;QR=822;RO=24;RPL=0;RPP=7.35324;RPPR=55.1256;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=55.1256;SRR=24;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:6:4,2:4:139:2:69:-4.74648,0,-11.0465 0/0:10:10,0:10:346:0:0:0,-3.0103,-31.4746 0/0:8:8,0:8:270:0:0:0,-2.40824,-24.6288 0/0:2:2,0:2:67:0:0:0,-0.60206,-6.36304 dDocent_Contig_13105 195 . C A 185.561 . AB=0;ABP=0;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=30;DPB=30;DPRA=0.4;EPP=13.8677;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=200;QR=1007;RO=25;RPL=5;RPP=13.8677;RPPR=57.2971;RPR=0;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=57.2971;SRR=25;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:12:12,0:12:488:0:0:0,-3.61236,-44.2715 1/1:5:0,5:0:0:5:200:-18.3799,-1.50515,0 0/0:13:13,0:13:519:0:0:0,-3.91339,-47.0564 ./.:.:.:.:.:.:.:. dDocent_Contig_13108 7 . G A 52.9804 . AB=0.230769;ABP=11.1951;AC=1;AF=0.125;AN=8;AO=3;CIGAR=2X;DP=42;DPB=42;DPRA=1.34483;EPP=9.52472;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.789474;PAO=0;PQA=0;PQR=0;PRO=0;QA=117;QR=1261;RO=38;RPL=0;RPP=9.52472;RPPR=85.5263;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:7:7,0:7:213:0:0:0,-2.10721,-19.4668 0|1:13:10,3:10:305:3:117:-6.99699,0,-23.8258 0|0:15:14,0:14:482:0:0:0,-4.21442,-43.4629 0|0:7:7,0:7:261:0:0:0,-2.10721,-23.847 dDocent_Contig_13109 13 . T C 132.356 . AB=0.26087;ABP=14.4341;AC=2;AF=0.5;AN=4;AO=6;CIGAR=1X;DP=23;DPB=23;DPRA=0;EPP=16.0391;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=246;QR=672;RO=17;RPL=0;RPP=16.0391;RPPR=39.9253;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 0/1:11:10,1:10:387:1:41:-0.783237,0,-31.8714 0/1:12:7,5:7:285:5:205:-15.2226,0,-22.412 dDocent_Contig_13110 174 . C T 881.599 . AB=0.5;ABP=3.0103;AC=5;AF=0.625;AN=8;AO=31;CIGAR=1X;DP=52;DPB=52;DPRA=0;EPP=70.3259;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1195;QR=792;RO=20;RPL=31;RPP=70.3259;RPPR=46.4397;RPR=0;RUN=1;SAF=0;SAP=70.3259;SAR=31;SRF=0;SRP=46.4397;SRR=20;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:8,6:8:319:6:229:-16.7556,0,-24.8608 1/1:14:1,12:1:40:12:443:-36.2007,-0.322223,0 0/1:13:9,4:9:367:4:158:-10.686,0,-29.4819 0/1:11:2,9:2:66:9:365:-29.9032,0,-2.95338 dDocent_Contig_13111 8 . T C 678.472 . AB=0.648649;ABP=10.1116;AC=5;AF=0.625;AN=8;AO=27;CIGAR=1X;DP=40;DPB=40;DPRA=0;EPP=61.6401;EPPR=31.2394;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=923;QR=392;RO=13;RPL=0;RPP=61.6401;RPPR=31.2394;RPR=27;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=13;SRP=31.2394;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:5,8:5:120:8:279:-21.5322,0,-7.12392 0/1:22:7,15:7:237:15:529:-41.3156,0,-15.0368 1/1:3:0,3:0:0:3:88:-8.2091,-0.90309,0 0/1:2:1,1:1:35:1:27:-2.09772,0,-2.89657 dDocent_Contig_13113 98 . N A 201.367 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=6;CIGAR=1X;DP=6;DPB=6;DPRA=0;EPP=16.0391;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=0.833333;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=207;QR=0;RO=0;RPL=6;RPP=16.0391;RPPR=0;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1:0,1:0:0:1:34:-3.39891,-0.30103,0 1/1:4:0,4:0:0:4:138:-12.7604,-1.20412,0 1/1:1:0,1:0:0:1:35:-3.49863,-0.30103,0 ./.:.:.:.:.:.:.:. dDocent_Contig_13114 115 . A C 32.201 . AB=0.285714;ABP=5.80219;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X;DP=29;DPB=29;DPRA=0.954545;EPP=7.35324;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.962963;PAO=0;PQA=0;PQR=0;PRO=0;QA=74;QR=998;RO=27;RPL=0;RPP=7.35324;RPPR=61.6401;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=61.6401;SRR=27;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:10:10,0:10:370:0:0:0,-3.0103,-33.6502 0/0:3:3,0:3:111:0:0:0,-0.90309,-10.3539 0/0:9:9,0:9:333:0:0:0,-2.70927,-30.3222 0/1:7:5,2:5:184:2:74:-4.91867,0,-14.8112 dDocent_Contig_13115 29 . G A 2434.19 . AB=0.5;ABP=3.0103;AC=5;AF=0.625;AN=8;AO=72;CIGAR=4M1X8M;DP=101;DPB=90;DPRA=0;EPP=159.356;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1.75;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2717;QR=574;RO=15;RPL=0;RPP=159.356;RPPR=35.5824;RPR=72;RUN=1;SAF=72;SAP=159.356;SAR=0;SRF=15;SRP=35.5824;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:43:0,0,43:0:0:0,43:0,1647:-148.489,-148.489,-148.489,-12.9443,-12.9443,0 0|1:34:9,6,19:9:346:6,19:211,685:-53.1755,-38.7137,-65.3206,0,-11.2649,-22.7054 0|1:13:1,7,4:1:39:7,4:248,157:-29.5803,-9.70538,-10.8034,-16.9583,0,-18.9633 0|1:11:5,0,6:5:189:0,6:0,228:-17.5723,-19.0774,-34.5689,0,-15.8701,-14.0639 dDocent_Contig_13118 94 . T A 54.9497 . AB=0.6;ABP=3.44459;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=31;DPB=31;DPRA=0.576923;EPP=9.52472;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.964286;PAO=0;PQA=0;PQR=0;PRO=0;QA=90;QR=901;RO=28;RPL=3;RPP=9.52472;RPPR=63.8115;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:5:2,3:2:66:3:90:-6.8927,0,-4.76303 0/0:11:11,0:11:350:0:0:0,-3.31133,-31.8078 0/0:6:6,0:6:201:0:0:0,-1.80618,-18.4192 0/0:9:9,0:9:284:0:0:0,-2.70927,-25.8682 dDocent_Contig_13119 120 . G T 1249.74 . AB=0.515152;ABP=3.20771;AC=4;AF=0.5;AN=8;AO=51;CIGAR=1X;DP=99;DPB=99;DPRA=0;EPP=113.755;EPPR=105.07;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.978723;PAO=0;PQA=0;PQR=0;PRO=0;QA=1785;QR=1603;RO=47;RPL=0;RPP=113.755;RPPR=105.07;RPR=51;RUN=1;SAF=0;SAP=113.755;SAR=51;SRF=0;SRP=105.07;SRR=47;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:13,14:13:447:14:493:-36.5749,0,-32.4313 0/1:29:4,25:4:139:25:864:-69.3417,0,-4.12282 0/1:23:16,7:16:553:7:249:-15.832,0,-43.1736 0/1:20:14,5:14:464:5:179:-10.6228,0,-36.2706 dDocent_Contig_13120 98 . N C 624.077 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=21;CIGAR=1X;DP=21;DPB=21;DPRA=0;EPP=48.6112;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=19.1613;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=690;QR=0;RO=0;RPL=21;RPP=48.6112;RPPR=0;RPR=0;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:21:0,21:0:0:21:690:-62.4077,-6.32163,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_13121 37 . C T 887.03 . AB=0.463768;ABP=3.79707;AC=4;AF=0.5;AN=8;AO=32;CIGAR=1X;DP=69;DPB=69;DPRA=0;EPP=72.4974;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.90625;PAIREDR=0.972973;PAO=0;PQA=0;PQR=0;PRO=0;QA=1281;QR=1458;RO=37;RPL=0;RPP=72.4974;RPPR=83.3548;RPR=32;RUN=1;SAF=32;SAP=72.4974;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:6,11:6:234:11:436:-34.4742,0,-16.3073 0/1:18:11,7:11:428:7:285:-20.6059,0,-33.4472 0/1:27:14,13:14:554:13:519:-38.9265,0,-42.0691 0/1:7:6,1:6:242:1:41:-1.98736,0,-20.0497 dDocent_Contig_13122 35 . A G 151.866 . AB=0.186047;ABP=39.8243;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=182;DPB=182;DPRA=0.928058;EPP=20.3821;EPPR=380.846;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=324;QR=6864;RO=174;RPL=0;RPP=20.3821;RPPR=380.846;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=174;SRP=380.846;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:43:35,8:35:1349:8:324:-16.5845,0,-108.716 0/0:54:54,0:54:2153:0:0:0,-16.2556,-193.956 0/0:53:53,0:53:2102:0:0:0,-15.9546,-189.371 0/0:32:32,0:32:1260:0:0:0,-9.63296,-113.673 dDocent_Contig_13123 12 . C G 365.372 . AB=0.448276;ABP=3.68421;AC=2;AF=0.25;AN=8;AO=13;CIGAR=1X;DP=52;DPB=52;DPRA=1.26087;EPP=31.2394;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=522;QR=1526;RO=39;RPL=0;RPP=31.2394;RPPR=87.6977;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:7,12:7:279:12:481:-37.9222,0,-19.7607 0/0:12:12,0:12:476:0:0:0,-3.61236,-43.1886 0/1:10:9,1:9:339:1:41:-1.08427,0,-27.848 0/0:11:11,0:11:432:0:0:0,-3.31133,-39.2306 dDocent_Contig_13124 96 . C A 97.4682 . AB=0.384615;ABP=4.51363;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=53;DPB=53;DPRA=2.3125;EPP=16.0391;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=202;QR=1663;RO=47;RPL=6;RPP=16.0391;RPPR=105.07;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:6:6,0:6:215:0:0:0,-1.80618,-19.6992 0/1:13:8,5:8:286:5:167:-11.4458,0,-22.1722 0/0:24:23,1:23:804:1:35:0,-3.72609,-69.1798 0/0:10:10,0:10:358:0:0:0,-3.0103,-32.5629 dDocent_Contig_13125 40 . T C 49.8943 . AB=0.166667;ABP=26.1727;AC=2;AF=0.25;AN=8;AO=4;CIGAR=1X;DP=55;DPB=55;DPRA=0.774194;EPP=11.6962;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.960784;PAO=0;PQA=0;PQR=0;PRO=0;QA=163;QR=2035;RO=51;RPL=0;RPP=11.6962;RPPR=113.755;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:12:12,0:12:472:0:0:0,-3.61236,-42.8281 0/1:8:7,1:7:278:1:40:-1.58744,0,-22.981 0/0:19:19,0:19:764:0:0:0,-5.71957,-69.0802 0/1:16:13,3:13:521:3:123:-6.64831,0,-42.4206 dDocent_Contig_13126 37 . A G 49.7342 . AB=0.2;ABP=14.7363;AC=1;AF=0.125;AN=8;AO=3;CIGAR=2X;DP=34;DPB=34;DPRA=2.36842;EPP=9.52472;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.806452;PAO=0;PQA=0;PQR=0;PRO=0;QA=120;QR=1231;RO=31;RPL=0;RPP=9.52472;RPPR=70.3259;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:8:8,0:8:324:0:0:0,-2.40824,-29.5292 0|1:15:12,3:12:468:3:120:-6.67224,0,-37.9474 0|0:8:8,0:8:316:0:0:0,-2.40824,-28.8049 0|0:3:3,0:3:123:0:0:0,-0.90309,-11.4648 dDocent_Contig_13128 15 . A C 151.595 . AB=0.188679;ABP=47.6279;AC=3;AF=0.375;AN=8;AO=10;CIGAR=1X;DP=63;DPB=63;DPRA=1.76667;EPP=24.725;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=393;QR=2081;RO=53;RPL=0;RPP=24.725;RPPR=118.098;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:10:10,0:10:402:0:0:0,-3.0103,-36.5399 0/1:26:22,4:22:887:4:157:-6.6804,0,-72.313 0/1:13:10,3:10:375:3:119:-7.18162,0,-30.1806 0/1:14:11,3:11:417:3:117:-6.69541,0,-33.6616 dDocent_Contig_13129 109 . G A 328.19 . AB=0.384615;ABP=7.52028;AC=2;AF=0.25;AN=8;AO=15;CIGAR=1X;DP=50;DPB=50;DPRA=3.54545;EPP=35.5824;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=47.9714;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.542857;PAO=0;PQA=0;PQR=0;PRO=0;QA=525;QR=1170;RO=35;RPL=0;RPP=35.5824;RPPR=79.0118;RPR=15;RUN=1;SAF=0;SAP=35.5824;SAR=15;SRF=0;SRP=79.0118;SRR=35;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:22,14:22:758:14:490:-33.5944,0,-50.4128 0/1:3:2,1:2:67:1:35:-2.59554,0,-5.45995 0/0:9:9,0:9:276:0:0:0,-2.70927,-24.0133 0/0:2:2,0:2:69:0:0:0,-0.60206,-5.96546 dDocent_Contig_13130 35 . A G 166.184 . AB=0.269231;ABP=15.0369;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=47;DPB=47;DPRA=3.71429;EPP=18.2106;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=283;QR=1537;RO=39;RPL=0;RPP=18.2106;RPPR=87.6977;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:19,7:19:737:7:283:-18.0162,0,-58.8269 0/0:12:11,0:11:441:0:0:0,-3.31133,-39.947 0/0:4:4,0:4:160:0:0:0,-1.20412,-14.7834 0/0:5:5,0:5:199:0:0:0,-1.50515,-18.2886 dDocent_Contig_13131 8 . T A 732.262 . AB=0.127451;ABP=125.975;AC=0;AF=0;AN=8;AO=15;CIGAR=1M2X;DP=163;DPB=163;DPRA=0;EPP=35.5824;EPPR=233.186;GTI=0;LEN=1;MEANALT=2.66667;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=0.133333;PAIREDR=0.849057;PAO=0;PQA=0;PQR=0;PRO=0;QA=540;QR=3488;RO=106;RPL=0;RPP=35.5824;RPPR=233.186;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=106;SRP=233.186;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:38:21,11,6,0:21:671:11,6,0:417,211,0:-27.8866,0,-50.6998,-17.0489,-36.8351,-69.2398,-34.2082,-54.0112,-71.046,-88.2168 0|0:64:47,9,7,1:47:1566:9,7,1:346,258,11:-14.2831,0,-124.01,-7.32926,-105.617,-131.924,-27.7583,-126.034,-133.347,-154.146 0|0:40:32,3,2,3:32:1085:3,2,3:116,71,33:0,-0.0377807,-87.2124,-3.82207,-82.3293,-91.2608,-7.66496,-86.0672,-89.8144,-94.6962 0|0:21:6,12,0,2:6:166:12,0,2:464,0,22:-36.4534,0,-9.56675,-38.2596,-13.1791,-51.3689,-36.9185,-11.8418,-50.014,-49.4119 dDocent_Contig_13133 55 . C A 570.873 . AB=0.478261;ABP=3.19912;AC=4;AF=0.5;AN=8;AO=22;CIGAR=1X;DP=46;DPB=46;DPRA=0;EPP=50.7827;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.681818;PAIREDR=0.708333;PAO=0;PQA=0;PQR=0;PRO=0;QA=854;QR=960;RO=24;RPL=22;RPP=50.7827;RPPR=55.1256;RPR=0;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:8,6:8:318:6:243:-18.0338,0,-24.7724 0/1:7:5,2:5:202:2:81:-5.57852,0,-16.4547 0/1:16:4,12:4:156:12:457:-36.6523,0,-9.60034 0/1:9:7,2:7:284:2:73:-4.21992,0,-23.2247 dDocent_Contig_13134 25 . A T 71.5591 . AB=0.190476;ABP=20.4855;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=84;DPB=84;DPRA=1.15385;EPP=13.8677;EPPR=174.557;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.8;PAIREDR=0.64557;PAO=0;PQA=0;PQR=0;PRO=0;QA=201;QR=3083;RO=79;RPL=0;RPP=13.8677;RPPR=174.557;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=79;SRP=174.557;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:17,4:17:678:4:161:-8.55385,0,-55.0317 0/0:14:14,0:14:543:0:0:0,-4.21442,-49.2113 0/0:24:23,1:23:874:1:40:0,-3.22904,-74.9643 0/0:25:25,0:25:988:0:0:0,-7.52575,-89.2211 dDocent_Contig_13135 28 . T G 1375.28 . AB=0.672414;ABP=17.986;AC=5;AF=0.625;AN=8;AO=47;CIGAR=1X;DP=66;DPB=66;DPRA=0;EPP=105.07;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1767;QR=744;RO=19;RPL=0;RPP=105.07;RPPR=44.2683;RPR=47;RUN=1;SAF=47;SAP=105.07;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:33:8,25:8:312:25:959:-76.6876,0,-18.5092 0/1:18:8,10:8:316:10:362:-27.4983,0,-23.3867 0/1:7:3,4:3:116:4:145:-11.2976,0,-8.70981 1/1:8:0,8:0:0:8:301:-27.4428,-2.40824,0 dDocent_Contig_13136 16 . T C 1356.43 . AB=0.578947;ABP=7.12467;AC=3;AF=0.375;AN=8;AO=45;CIGAR=1X;DP=116;DPB=116;DPRA=0;EPP=100.727;EPPR=157.185;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1831;QR=2829;RO=71;RPL=0;RPP=100.727;RPPR=157.185;RPR=45;RUN=1;SAF=45;SAP=100.727;SAR=0;SRF=71;SRP=157.185;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:62:20,42:20:803:42:1711:-135.539,0,-53.9221 0/0:40:39,1:39:1539:1:38:0,-8.24393,-134.959 0/1:12:11,1:11:446:1:41:-0.482207,0,-36.8827 0/1:2:1,1:1:41:1:41:-3.49251,0,-3.49251 dDocent_Contig_13137 10 . G A 629.149 . AB=0.341176;ABP=21.6339;AC=4;AF=0.5;AN=8;AO=29;CIGAR=1X;DP=85;DPB=85;DPRA=0;EPP=65.983;EPPR=65.0524;GTI=0;LEN=1;MEANALT=1;MQM=58;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.589286;PAO=0;PQA=0;PQR=0;PRO=0;QA=1064;QR=1988;RO=56;RPL=0;RPP=65.983;RPPR=124.613;RPR=29;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=48;SRP=65.0524;SRR=8;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:15,5:15:539:5:203:-12.6325,0,-42.8126 0/1:19:12,7:12:416:7:261:-18.0658,0,-32.0388 0/1:30:21,9:21:742:9:294:-17.7367,0,-58.0589 0/1:16:8,8:8:291:8:306:-21.878,0,-21.7165 dDocent_Contig_13139 80 . T C 162.955 . AB=0.122807;ABP=73.4498;AC=4;AF=0.5;AN=8;AO=11;CIGAR=1X;DP=93;DPB=93;DPRA=0.635417;EPP=26.8965;EPPR=181.071;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.95122;PAO=0;PQA=0;PQR=0;PRO=0;QA=397;QR=3009;RO=82;RPL=11;RPP=26.8965;RPPR=181.071;RPR=0;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=82;SRP=181.071;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:32:32,0:32:1169:0:0:0,-9.63296,-105.516 0/1:43:38,5:38:1402:5:182:-3.79072,0,-113.53 1/1:4:0,4:0:0:4:148:-13.682,-1.20412,0 0/1:14:12,2:12:438:2:67:-2.14811,0,-35.5483 dDocent_Contig_13140 10 . C T 49.7118 . AB=0.272727;ABP=7.94546;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=42;DPB=42;DPRA=1.06452;EPP=9.52472;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.923077;PAO=0;PQA=0;PQR=0;PRO=0;QA=107;QR=1472;RO=39;RPL=0;RPP=9.52472;RPPR=87.6977;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:8:8,0:8:306:0:0:0,-2.40824,-27.9001 0/1:11:8,3:8:309:3:107:-6.67012,0,-24.8598 0/0:6:6,0:6:236:0:0:0,-1.80618,-21.6118 0/0:17:17,0:17:621:0:0:0,-5.11751,-56.2075 dDocent_Contig_13141 169 . T A 1624.31 . AB=0.784615;ABP=48.7448;AC=1;AF=0.25;AN=4;AO=51;CIGAR=1X;DP=71;DPB=71;DPRA=10.8333;EPP=113.755;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2039;QR=788;RO=20;RPL=51;RPP=113.755;RPPR=46.4397;RPR=0;RUN=1;SAF=0;SAP=113.755;SAR=51;SRF=0;SRP=46.4397;SRR=20;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:65:14,51:14:547:51:2039:-164.13,0,-30.0026 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 0/0:6:6,0:6:241:0:0:0,-1.80618,-22.0663 dDocent_Contig_13143 21 . T G 383.054 . AB=0.283333;ABP=27.4756;AC=3;AF=0.375;AN=8;AO=17;CIGAR=1X;DP=74;DPB=74;DPRA=1.42857;EPP=39.9253;EPPR=126.784;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=674;QR=2291;RO=57;RPL=0;RPP=39.9253;RPPR=126.784;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:15,9:15:602:9:362:-25.7184,0,-47.293 0/1:23:17,6:17:688:6:240:-15.0513,0,-55.326 0/0:14:14,0:14:551:0:0:0,-4.21442,-49.9249 0/1:13:11,2:11:450:2:72:-2.92093,0,-36.9424 dDocent_Contig_13145 12 . T C 338.745 . AB=0.301887;ABP=21.0786;AC=4;AF=0.5;AN=8;AO=16;CIGAR=1X2M1X;DP=53;DPB=53;DPRA=0;EPP=37.7539;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.8125;PAIREDR=0.891892;PAO=0;PQA=0;PQR=0;PRO=0;QA=617;QR=1463;RO=37;RPL=0;RPP=37.7539;RPPR=83.3548;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:14:4,10:4:162:10:386:-30.8819,0,-10.7525 0|1:19:17,2:17:670:2:80:-1.87222,0,-54.9121 0|1:11:9,2:9:364:2:73:-3.61997,0,-29.8136 0|1:9:7,2:7:267:2:78:-4.69403,0,-21.6794 dDocent_Contig_13152 115 . C G 150.912 . AB=0.3;ABP=6.48466;AC=3;AF=0.375;AN=8;AO=6;CIGAR=1X;DP=29;DPB=29;DPRA=0.8125;EPP=16.0391;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=209;QR=801;RO=23;RPL=0;RPP=16.0391;RPPR=52.9542;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=52.9542;SRR=23;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:105:-9.79616,-0.90309,0 0/0:11:11,0:11:381:0:0:0,-3.31133,-34.6229 0/0:5:5,0:5:175:0:0:0,-1.50515,-16.0936 0/1:10:7,3:7:245:3:104:-6.69279,0,-19.3809 dDocent_Contig_13153 60 . A T 284.18 . AB=0.156627;ABP=88.0117;AC=5;AF=0.625;AN=8;AO=16;CIGAR=1X;DP=86;DPB=86;DPRA=0;EPP=37.7539;EPPR=155.013;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=0.5625;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=636;QR=2717;RO=70;RPL=16;RPP=37.7539;RPPR=155.013;RPR=0;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=70;SRP=155.013;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:20,5:20:765:5:197:-10.5788,0,-61.6431 0/1:53:46,7:46:1795:7:279:-9.52544,0,-145.821 0/1:5:4,1:4:157:1:40:-2.49053,0,-13.002 1/1:3:0,3:0:0:3:120:-11.1873,-0.90309,0 dDocent_Contig_13154 46 . C T 524.835 . AB=0.327869;ABP=18.709;AC=5;AF=0.625;AN=8;AO=21;CIGAR=1X;DP=62;DPB=62;DPRA=0;EPP=48.6112;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=832;QR=1617;RO=41;RPL=0;RPP=48.6112;RPPR=92.0407;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:32:19,13:19:759:13:525:-37.9643,0,-58.9979 0/1:13:9,4:9:336:4:163:-11.145,0,-26.6614 1/1:1:0,1:0:0:1:24:-2.39989,-0.30103,0 0/1:16:13,3:13:522:3:120:-6.37121,0,-42.5095 dDocent_Contig_13155 42 . C A 582.038 . AB=0.380952;ABP=10.7656;AC=4;AF=0.5;AN=8;AO=24;CIGAR=1X;DP=63;DPB=63;DPRA=0;EPP=55.1256;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=913;QR=1570;RO=39;RPL=0;RPP=55.1256;RPPR=87.6977;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:11,13:11:443:13:484:-36.6702,0,-33.0014 0/1:22:20,2:20:804:2:81:-1.06307,0,-66.0542 0/1:6:4,2:4:161:2:71:-4.93325,0,-13.0691 0/1:11:4,7:4:162:7:277:-21.9858,0,-11.6556 dDocent_Contig_13156 26 . C G 2384.88 . AB=0.745098;ABP=56.2327;AC=4;AF=0.5;AN=8;AO=76;CIGAR=1X;DP=102;DPB=102;DPRA=0;EPP=168.042;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.552632;PAIREDR=0.769231;PAO=0;PQA=0;PQR=0;PRO=0;QA=3059;QR=1043;RO=26;RPL=0;RPP=168.042;RPPR=59.4686;RPR=76;RUN=1;SAF=76;SAP=168.042;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:6,17:6:239:17:691:-55.5944,0,-14.9587 0/1:31:4,27:4:161:27:1088:-88.8734,0,-5.54297 0/1:39:14,25:14:568:25:996:-78.1931,0,-39.7218 0/1:9:2,7:2:75:7:284:-23.2245,0,-4.40953 dDocent_Contig_13158 107 . N A 124.836 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=7.37776;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=135;QR=0;RO=0;RPL=0;RPP=11.6962;RPPR=0;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:4:0,4:0:0:4:135:-12.4833,-1.20412,0 ./.:.:.:.:.:.:.:. dDocent_Contig_13159 44 . G A 138.823 . AB=0.5;ABP=3.0103;AC=2;AF=0.25;AN=8;AO=6;CIGAR=1X;DP=35;DPB=35;DPRA=0.521739;EPP=16.0391;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=0.333333;PAIREDR=0.689655;PAO=0;PQA=0;PQR=0;PRO=0;QA=224;QR=1084;RO=29;RPL=0;RPP=16.0391;RPPR=65.983;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:14:14,0:14:528:0:0:0,-4.21442,-47.862 0/0:9:9,0:9:326:0:0:0,-2.70927,-29.6829 0/1:6:3,3:3:115:3:116:-9.01152,0,-8.91871 0/1:6:3,3:3:115:3:108:-8.26871,0,-8.91871 dDocent_Contig_13160 20 . T A 615.709 . AB=0.348485;ABP=16.1707;AC=1;AF=0.125;AN=8;AO=23;CIGAR=1X;DP=93;DPB=93;DPRA=7.33333;EPP=52.9542;EPPR=155.013;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=917;QR=2833;RO=70;RPL=0;RPP=52.9542;RPPR=155.013;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=70;SRP=155.013;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:66:43,23:43:1736:23:917:-62.9686,0,-136.587 0/0:2:2,0:2:82:0:0:0,-0.60206,-7.77968 0/0:13:13,0:13:531:0:0:0,-3.91339,-48.1364 0/0:12:12,0:12:484:0:0:0,-3.61236,-43.9118 dDocent_Contig_13162 11 . A G 110.46 . AB=0;ABP=0;AC=2;AF=0.25;AN=8;AO=3;CIGAR=1X;DP=21;DPB=21;DPRA=0.5;EPP=9.52472;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.777778;PAO=0;PQA=0;PQR=0;PRO=0;QA=112;QR=697;RO=18;RPL=0;RPP=9.52472;RPPR=42.0968;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:112:-10.4437,-0.90309,0 0/0:5:5,0:5:200:0:0:0,-1.50515,-18.379 0/0:6:6,0:6:221:0:0:0,-1.80618,-20.2443 0/0:7:7,0:7:276:0:0:0,-2.10721,-25.2095 dDocent_Contig_13163 77 . A C 37.4823 . AB=0.2;ABP=18.6449;AC=2;AF=0.25;AN=8;AO=4;CIGAR=1X;DP=29;DPB=29;DPRA=2.22222;EPP=11.6962;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=138;QR=861;RO=25;RPL=4;RPP=11.6962;RPPR=57.2971;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:2:2,0:2:70:0:0:0,-0.60206,-6.6474 0/1:16:13,3:13:442:3:104:-4.88661,0,-35.2892 0/1:4:3,1:3:105:1:34:-2.19479,0,-8.59204 0/0:7:7,0:7:244:0:0:0,-2.10721,-22.3001 dDocent_Contig_13165 35 . T G 82.7526 . AB=0.2;ABP=10.8276;AC=2;AF=0.25;AN=8;AO=2;CIGAR=1X8M1X1M;DP=32;DPB=32.2727;DPRA=1.81818;EPP=7.35324;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=1.73472e-18;PAIRED=0;PAIREDR=0.884615;PAO=0;PQA=0;PQR=0;PRO=0;QA=80;QR=1030;RO=26;RPL=0;RPP=7.35324;RPPR=59.4686;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:11:7,3,0:7:272:3,0:110,0:-7.09114,0,-21.7085,-9.19835,-22.6116,-31.6068 0|0:3:3,0,0:3:119:0,0:0,0:0,-0.90309,-11.095,-0.90309,-11.095,-11.095 0|1:10:8,0,2:8:317:0,2:0,80:-4.58149,-6.98973,-33.0798,0,-26.4889,-25.8868 0|0:8:8,0,0:8:322:0,0:0,0:0,-2.40824,-29.3487,-2.40824,-29.3487,-29.3487 dDocent_Contig_13166 38 . C T 136.368 . AB=0.171429;ABP=68.6508;AC=2;AF=0.25;AN=8;AO=14;CIGAR=1X;DP=151;DPB=151;DPRA=1.14706;EPP=33.4109;EPPR=158.358;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=54.3139;NS=4;NUMALT=1;ODDS=0;PAIRED=0.357143;PAIREDR=0.394161;PAO=0;PQA=0;PQR=0;PRO=0;QA=491;QR=5386;RO=137;RPL=0;RPP=33.4109;RPPR=300.502;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=118;SRP=158.358;SRR=19;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:34:34,0:34:1339:0:0:0,-10.235,-113.507 0/0:47:45,2:45:1785:2:75:0,-7.02807,-147.938 0/1:48:41,7:41:1586:7:239:-7.38387,0,-116.404 0/1:22:17,5:17:676:5:177:-9.65089,0,-53.0895 dDocent_Contig_13167 18 . C T 61.7701 . AB=0.25;ABP=9.52472;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=94;DPB=94;DPRA=0.439024;EPP=9.52472;EPPR=200.614;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=8.67362e-19;PAIRED=0.666667;PAIREDR=0.681319;PAO=0;PQA=0;PQR=0;PRO=0;QA=120;QR=3634;RO=91;RPL=0;RPP=9.52472;RPPR=200.614;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=91;SRP=200.614;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:9,3:9:361:3:120:-7.57495,0,-29.2413 0/0:33:33,0:33:1314:0:0:0,-9.93399,-118.524 0/0:30:30,0:30:1213:0:0:0,-9.0309,-109.442 0/0:19:19,0:19:746:0:0:0,-5.71957,-67.4582 dDocent_Contig_13168 10 . T C 1533.6 . AB=0.6125;ABP=11.8048;AC=5;AF=0.625;AN=8;AO=49;CIGAR=1X2M;DP=80;DPB=80;DPRA=0;EPP=109.412;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1831;QR=951;RO=25;RPL=0;RPP=109.412;RPPR=57.2971;RPR=49;RUN=1;SAF=49;SAP=109.412;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:15:0,6,9:0:0:6,9:208,353:-46.3032,-29.4217,-27.6155,-17.2461,0,-14.5368 0|1:9:2,0,7:2:76:0,7:0,259:-20.9499,-21.552,-27.7871,0,-6.61261,-4.5054 0|1:41:12,0,29:12:450:0,29:0,1071:-84.3422,-87.9546,-124.81,0,-37.2282,-28.4983 0|1:15:11,0,4:11:425:0,4:0,148:-9.1621,-12.4734,-47.3889,0,-35.2895,-34.0853 dDocent_Contig_13170 9 . G C 446.908 . AB=0.395833;ABP=7.5342;AC=2;AF=0.25;AN=8;AO=19;CIGAR=1X;DP=76;DPB=76;DPRA=1.71429;EPP=44.2683;EPPR=126.784;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.8772;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=685;QR=1974;RO=57;RPL=0;RPP=44.2683;RPPR=126.784;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:42:28,14:28:969:14:492:-31.9607,0,-74.8656 0/0:23:23,0:23:800:0:0:0,-6.92369,-72.3074 0/1:6:1,5:1:37:5:193:-15.9352,0,-1.88305 0/0:5:5,0:5:168:0:0:0,-1.50515,-15.4507 dDocent_Contig_13171 69 . G A 50.6408 . AB=0.25;ABP=9.52472;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=59;DPB=59;DPRA=0.765957;EPP=9.52472;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.982143;PAO=0;PQA=0;PQR=0;PRO=0;QA=108;QR=2114;RO=56;RPL=3;RPP=9.52472;RPPR=124.613;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:9,3:9:340:3:108:-6.46202,0,-27.3421 0/0:24:24,0:24:897:0:0:0,-7.22472,-81.0418 0/0:12:12,0:12:460:0:0:0,-3.61236,-41.75 0/0:11:11,0:11:417:0:0:0,-3.31133,-37.8782 dDocent_Contig_13172 21 . C A 245.385 . AB=0.344828;ABP=9.07545;AC=2;AF=0.25;AN=8;AO=10;CIGAR=1X;DP=67;DPB=67;DPRA=0.763158;EPP=24.725;EPPR=126.784;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.929825;PAO=0;PQA=0;PQR=0;PRO=0;QA=399;QR=2258;RO=57;RPL=0;RPP=24.725;RPPR=126.784;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:4:4,0:4:150:0:0:0,-1.20412,-13.8597 0/0:34:34,0:34:1337:0:0:0,-10.235,-120.592 0/1:21:16,5:16:648:5:204:-12.4224,0,-52.3319 0/1:8:3,5:3:123:5:195:-15.514,0,-9.05655 dDocent_Contig_13173 161 . A G 744.366 . AB=0.694444;ABP=14.8328;AC=1;AF=0.166667;AN=6;AO=25;CIGAR=1X;DP=52;DPB=52;DPRA=4.5;EPP=57.2971;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=961;QR=912;RO=27;RPL=25;RPP=57.2971;RPPR=61.6401;RPR=0;RUN=1;SAF=0;SAP=57.2971;SAR=25;SRF=0;SRP=61.6401;SRR=27;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:11,25:11:365:25:961:-75.9587,0,-22.3286 0/0:15:15,0:15:508:0:0:0,-4.51545,-46.0369 ./.:.:.:.:.:.:.:. 0/0:1:1,0:1:39:0:0:0,-0.30103,-3.89656 dDocent_Contig_13174 48 . G T 361.43 . AB=0.267857;ABP=29.2231;AC=1;AF=0.125;AN=8;AO=15;CIGAR=1X;DP=131;DPB=131;DPRA=2.24;EPP=35.5824;EPPR=254.901;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=604;QR=4571;RO=116;RPL=0;RPP=35.5824;RPPR=254.901;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=116;SRP=254.901;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:1:1,0:1:41:0:0:0,-0.30103,-4.09457 0/1:56:41,15:41:1630:15:604:-37.8414,0,-130.074 0/0:41:41,0:41:1630:0:0:0,-12.3422,-146.934 0/0:33:33,0:33:1270:0:0:0,-9.93399,-114.564 dDocent_Contig_13175 53 . C T 349.005 . AB=0.411765;ABP=5.30951;AC=3;AF=0.375;AN=8;AO=14;CIGAR=1X;DP=36;DPB=36;DPRA=5.66667;EPP=33.4109;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.954545;PAO=0;PQA=0;PQR=0;PRO=0;QA=549;QR=870;RO=22;RPL=14;RPP=33.4109;RPPR=50.7827;RPR=0;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:7,4:7:265:4:163:-11.7471,0,-20.8914 0/1:16:11,5:11:443:5:189:-12.5534,0,-35.4083 0/1:7:2,5:2:81:5:197:-15.9977,0,-5.57852 0/0:2:2,0:2:81:0:0:0,-0.60206,-7.68573 dDocent_Contig_13176 97 . A C 65.1187 . AB=0.170213;ABP=47.41;AC=3;AF=0.375;AN=8;AO=8;CIGAR=1X;DP=62;DPB=62;DPRA=1.04444;EPP=20.3821;EPPR=120.27;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.625;PAIREDR=0.962963;PAO=0;PQA=0;PQR=0;PRO=0;QA=267;QR=1582;RO=54;RPL=8;RPP=20.3821;RPPR=120.27;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:15:15,0:15:445:0:0:0,-4.51545,-40.3388 0/1:29:24,5:24:696:5:164:-6.35392,0,-54.1875 0/1:10:8,2:8:223:2:69:-3.54236,0,-17.3356 0/1:8:7,1:7:218:1:34:-0.990671,0,-17.5191 dDocent_Contig_13177 7 . G A 1635.78 . AB=0.172043;ABP=176.775;AC=3;AF=0.375;AN=8;AO=32;CIGAR=1M3I1M1X1M2X6M6I3M1X;DP=186;DPB=268.062;DPRA=0;EPP=72.4974;EPPR=102.898;GTI=0;LEN=1;MEANALT=6.5;MQM=45.75;MQMR=60;NS=4;NUMALT=6;ODDS=5.55112e-17;PAIRED=0.9375;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1176;QR=1714;RO=46;RPL=0;RPP=72.4974;RPPR=102.898;RPR=32;RUN=1;SAF=32;SAP=72.4974;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:20:0,2,13,0,0,2,0:0:0:2,13,0,0,2,0:77,445,0,0,49,0:-41.6225,-35.3327,-34.7307,-6.30001,0,-2.38662,-41.6225,-35.3327,-6.30001,-41.6225,-41.6225,-35.3327,-6.30001,-41.6225,-41.6225,-37.8256,-31.5365,-2.53267,-37.8256,-37.8256,-37.2236,-41.6225,-35.3327,-6.30001,-41.6225,-41.6225,-37.8256,-41.6225 0|0:64:19,0,11,1,28,0,0:19:710:0,11,1,28,0,0:0,424,35,819,0,0:-59.4908,-65.2104,-123.361,-31.5072,-89.6665,-86.3552,-62.3621,-120.513,-86.8184,-120.212,0,-58.1347,-24.448,-55.2877,-49.7059,-65.2104,-123.361,-89.6665,-120.513,-58.1347,-123.361,-65.2104,-123.361,-89.6665,-120.513,-58.1347,-123.361,-123.361 0|0:54:20,2,1,1,14,0,3:20:749:2,1,1,14,0,3:75,39,35,378,0,95:-23.7396,-23.6488,-84.4057,-26.5792,-81.8278,-87.6363,-26.9117,-82.1599,-85.0895,-87.9684,0,-55.2357,-58.1647,-58.497,-57.1298,-29.7602,-85.0078,-87.9374,-88.2694,-61.3442,-91.1173,-22.1158,-77.3641,-80.2937,-80.6258,-53.7033,-83.4737,-82.5706 1|0:48:7,0,7,19,6,0,0:7:255:0,7,19,6,0,0:0,268,588,198,0,0:-46.0711,-48.1783,-69.0119,-26.3391,-47.1756,-45.0684,-1.005,-21.8394,0,-16.1198,-32.1685,-53.0031,-31.1654,-5.8341,-51.1969,-48.1783,-69.0119,-47.1756,-21.8394,-53.0031,-69.0119,-48.1783,-69.0119,-47.1756,-21.8394,-53.0031,-69.0119,-69.0119 dDocent_Contig_13179 1 . N G 463.695 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=12;CIGAR=1X;DP=12;DPB=12;DPRA=0;EPP=29.068;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=4;NUMALT=1;ODDS=3.38813e-21;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=491;QR=0;RO=0;RPL=0;RPP=29.068;RPPR=0;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:123:-11.4648,-0.90309,0 1/1:4:0,4:0:0:4:164:-15.1499,-1.20412,0 1/1:3:0,3:0:0:3:122:-11.3725,-0.90309,0 1/1:2:0,2:0:0:2:82:-7.77968,-0.60206,0 dDocent_Contig_13180 32 . T G 318.825 . AB=0.254237;ABP=33.963;AC=3;AF=0.375;AN=8;AO=17;CIGAR=1X;DP=84;DPB=84;DPRA=0;EPP=39.9253;EPPR=148.499;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.823529;PAIREDR=0.955224;PAO=0;PQA=0;PQR=0;PRO=0;QA=676;QR=2640;RO=67;RPL=0;RPP=39.9253;RPPR=148.499;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=67;SRP=148.499;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:18,7:18:708:7:286:-18.5891,0,-56.5171 0/0:25:23,2:23:895:2:77:0,-0.216917,-73.5393 0/1:17:12,5:12:485:5:194:-12.7128,0,-38.8839 0/1:17:14,3:14:552:3:119:-5.97788,0,-44.9059 dDocent_Contig_13182 14 . T C 35.8194 . AB=0.15;ABP=24.2907;AC=2;AF=0.25;AN=8;AO=3;CIGAR=1X;DP=40;DPB=40;DPRA=1;EPP=9.52472;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=0.333333;PAIREDR=0.783784;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=1438;RO=37;RPL=0;RPP=9.52472;RPPR=83.3548;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:6:6,0:6:232:0:0:0,-1.80618,-21.2465 0/1:8:6,2:6:236:2:81:-5.27749,0,-19.2014 0/1:12:11,1:11:436:1:41:-0.482207,0,-35.9809 0/0:14:14,0:14:534:0:0:0,-4.21442,-48.3853 dDocent_Contig_13184 15 . C T 195.204 . AB=0.347826;ABP=7.63648;AC=2;AF=0.25;AN=8;AO=10;CIGAR=1X;DP=68;DPB=68;DPRA=3.44444;EPP=24.725;EPPR=128.956;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=403;QR=2283;RO=58;RPL=0;RPP=24.725;RPPR=128.956;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:6:2,4:2:78:4:161:-13.0691,0,-5.59729 0/0:39:37,2:37:1453:2:80:0,-4.14859,-123.434 0/1:17:13,4:13:515:4:162:-9.84924,0,-41.5788 0/0:6:6,0:6:237:0:0:0,-1.80618,-21.7026 dDocent_Contig_13185 7 . G T 84.6227 . AB=0.333333;ABP=5.9056;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X;DP=69;DPB=69;DPRA=5.41667;EPP=22.5536;EPPR=133.299;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.0667;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.966667;PAO=0;PQA=0;PQR=0;PRO=0;QA=246;QR=1939;RO=60;RPL=0;RPP=22.5536;RPPR=133.299;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:10:9,1:9:272:1:11:0,-1.9103,-23.6712 0/0:43:39,4:39:1261:4:86:0,-4.9926,-105.796 0/1:12:8,4:8:256:4:149:-10.1612,0,-19.3525 0/0:4:4,0:4:150:0:0:0,-1.20412,-13.8654 dDocent_Contig_13186 50 . T C 63.2784 . AB=0.2;ABP=18.6449;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=89;DPB=89;DPRA=1.54286;EPP=13.8677;EPPR=185.414;GTI=0;LEN=1;MEANALT=1;MQM=55.6;MQMR=57.5238;NS=4;NUMALT=1;ODDS=0;PAIRED=0.8;PAIREDR=0.702381;PAO=0;PQA=0;PQR=0;PRO=0;QA=192;QR=3210;RO=84;RPL=3;RPP=3.44459;RPPR=17.9004;RPR=2;RUN=1;SAF=3;SAP=3.44459;SAR=2;SRF=54;SRP=17.9004;SRR=30;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:16:16,0:16:611:0:0:0,-4.81648,-55.323 0/0:19:19,0:19:734:0:0:0,-5.71957,-62.8662 0/1:20:16,4:16:599:4:152:-8.02681,0,-48.215 0/0:34:33,1:33:1266:1:40:0,-6.64744,-109.308 dDocent_Contig_13187 10 . G T 603.757 . AB=0.431034;ABP=5.40641;AC=3;AF=0.375;AN=8;AO=25;CIGAR=1X;DP=95;DPB=95;DPRA=0.522523;EPP=57.2971;EPPR=155.013;GTI=0;LEN=1;MEANALT=1;MQM=52.4;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.857143;PAO=0;PQA=0;PQR=0;PRO=0;QA=917;QR=2692;RO=70;RPL=0;RPP=57.2971;RPPR=155.013;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=70;SRP=155.013;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:37:37,0:37:1410:0:0:0,-11.1381,-127.172 0/1:26:12,14:12:476:14:508:-38.0208,0,-35.3649 0/1:21:15,6:15:583:6:210:-12.8541,0,-46.4881 0/1:11:6,5:6:223:5:199:-14.8988,0,-17.1136 dDocent_Contig_13190 21 . C T 71.268 . AB=0.5;ABP=3.0103;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=29;DPB=29;DPRA=0.782609;EPP=9.52472;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=114;QR=1036;RO=26;RPL=0;RPP=9.52472;RPPR=59.4686;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:10:10,0:10:393:0:0:0,-3.0103,-35.726 0/0:10:10,0:10:409:0:0:0,-3.0103,-37.1706 0/0:3:3,0:3:112:0:0:0,-0.90309,-10.4437 0/1:6:3,3:3:122:3:114:-8.82563,0,-9.56631 dDocent_Contig_13191 130 . G A 86.682 . AB=0;ABP=0;AC=2;AF=0.333333;AN=6;AO=3;CIGAR=1X;DP=15;DPB=15;DPRA=0.5;EPP=9.52472;EPPR=29.068;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=91;QR=369;RO=12;RPL=0;RPP=9.52472;RPPR=29.068;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=29.068;SRR=12;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:6:6,0:6:187:0:0:0,-1.80618,-17.1372 0/0:6:6,0:6:182:0:0:0,-1.80618,-16.6801 1/1:3:0,3:0:0:3:91:-8.49188,-0.90309,0 ./.:.:.:.:.:.:.:. dDocent_Contig_13192 115 . C T 71.748 . AB=0.5;ABP=3.0103;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=29;DPB=29;DPRA=1.14286;EPP=11.6962;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=852;RO=25;RPL=0;RPP=11.6962;RPPR=57.2971;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=57.2971;SRR=25;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:12:12,0:12:414:0:0:0,-3.61236,-37.5914 0/0:1:1,0:1:35:0:0:0,-0.30103,-3.49863 0/0:8:8,0:8:279:0:0:0,-2.40824,-25.449 0/1:8:4,4:4:124:4:122:-8.87319,0,-9.05792 dDocent_Contig_13195 44 . C T 157.031 . AB=0.333333;ABP=8.07707;AC=2;AF=0.25;AN=8;AO=7;CIGAR=1X;DP=40;DPB=40;DPRA=1.10526;EPP=18.2106;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.142857;PAIREDR=0.625;PAO=0;PQA=0;PQR=0;PRO=0;QA=274;QR=1296;RO=32;RPL=0;RPP=18.2106;RPPR=72.4974;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:6,5:6:243:5:193:-14.4253,0,-18.9366 0/1:10:8,2:8:321:2:81:-4.67543,0,-26.2471 0/0:15:14,0:14:568:0:0:0,-4.21442,-51.0624 0/0:4:4,0:4:164:0:0:0,-1.20412,-15.1499 dDocent_Contig_13196 1 . N G 321.85 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=10;CIGAR=1X;DP=10;DPB=10;DPRA=0;EPP=24.725;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=341;QR=0;RO=0;RPL=0;RPP=24.725;RPPR=0;RPR=10;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:70:-6.6474,-0.60206,0 ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:102:-9.5168,-0.90309,0 1/1:5:0,5:0:0:5:169:-15.5431,-1.50515,0 dDocent_Contig_13197 106 . N C 51.2975 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=54;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:54:-5.12867,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_13198 23 . A G 288.168 . AB=0.177083;ABP=89.9597;AC=2;AF=0.25;AN=8;AO=23;CIGAR=2X;DP=190;DPB=190;DPRA=0;EPP=52.9542;EPPR=357.012;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.994012;PAO=0;PQA=0;PQR=0;PRO=0;QA=905;QR=6655;RO=167;RPL=0;RPP=52.9542;RPPR=365.646;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=166;SRP=357.012;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:38:35,3:35:1383:3:117:0,-0.529853,-113.821 0|0:56:53,3:53:2109:3:117:0,-5.94839,-179.084 0|1:48:42,6:42:1675:6:233:-6.88832,0,-136.534 0|1:48:37,11:37:1488:11:438:-25.3261,0,-119.717 dDocent_Contig_13199 13 . T C 135.347 . AB=0.26087;ABP=14.4341;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=74;DPB=74;DPRA=1.35294;EPP=16.0391;EPPR=150.67;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=242;QR=2681;RO=68;RPL=0;RPP=16.0391;RPPR=150.67;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=68;SRP=150.67;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:20:20,0:20:797:0:0:0,-6.0206,-72.0499 0/0:15:15,0:15:593:0:0:0,-4.51545,-53.7082 0/1:23:17,6:17:654:6:242:-15.2336,0,-52.2666 0/0:16:16,0:16:637:0:0:0,-4.81648,-57.6626 dDocent_Contig_13200 21 . T G 2071.95 . AB=0.25;ABP=170.214;AC=3;AF=0.375;AN=8;AO=77;CIGAR=2M1X7M;DP=308;DPB=307;DPRA=0;EPP=170.214;EPPR=313.531;GTI=0;LEN=1;MEANALT=6.75;MQM=60;MQMR=60;NS=4;NUMALT=6;ODDS=0;PAIRED=0.506494;PAIREDR=0.503497;PAO=0;PQA=0;PQR=0;PRO=0;QA=3121;QR=5645;RO=143;RPL=0;RPP=170.214;RPPR=313.531;RPR=77;RUN=1;SAF=77;SAP=170.214;SAR=0;SRF=143;SRP=313.531;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:63:29,2,1,0,5,13,13:29:1156:2,1,0,5,13,13:80,35,0,202,527,529:-34.9092,-37.0493,-131.643,-40.8382,-129.443,-135.732,-43.639,-132.245,-136.033,-138.835,-26.9858,-115.592,-119.38,-122.182,-120.676,-0.179514,-88.7856,-92.574,-95.3756,-78.7219,-91.4622,0,-88.6066,-92.3951,-95.1966,-78.5429,-51.7362,-91.2832 0|1:71:28,2,4,6,0,22,5:28:1103:2,4,6,0,22,5:76,130,239,0,884,202:-64.4294,-66.6268,-156.768,-63.0031,-147.512,-152.539,-53.1757,-137.689,-134.062,-142.114,-72.8582,-157.37,-153.743,-143.92,-163.602,0,-84.5204,-80.8955,-71.0692,-90.752,-84.1293,-56.2035,-140.717,-137.09,-127.266,-146.948,-74.0972,-145.443 0|1:99:58,8,0,1,5,19,7:58:2275:8,0,1,5,19,7:310,0,40,192,773,277:-46.3104,-38.3081,-222.983,-63.7701,-225.391,-250.855,-60.475,-222.096,-247.56,-247.259,-48.0148,-209.635,-235.099,-231.803,-233.593,0,-161.626,-187.09,-183.794,-171.333,-181.37,-40.9757,-202.596,-228.06,-224.765,-212.304,-164.294,-225.953 0|1:75:28,5,0,0,1,23,15:28:1111:5,0,0,1,23,15:197,0,0,40,937,591:-68.8776,-61.1005,-151.051,-77.3065,-152.556,-168.762,-77.3065,-152.556,-168.762,-168.762,-74.0114,-149.261,-165.467,-165.467,-165.166,0,-75.2521,-91.4587,-91.4587,-88.1636,-84.5351,-28.6958,-103.944,-120.15,-120.15,-116.855,-42.8456,-115.634 dDocent_Contig_13201 30 . T G 222.993 . AB=0.261905;ABP=23.691;AC=2;AF=0.25;AN=8;AO=12;CIGAR=1X;DP=80;DPB=80;DPRA=0.936508;EPP=29.068;EPPR=150.67;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.75;PAIREDR=0.764706;PAO=0;PQA=0;PQR=0;PRO=0;QA=449;QR=2699;RO=68;RPL=0;RPP=29.068;RPPR=150.67;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=68;SRP=150.67;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:17,5:17:654:5:193:-11.1158,0,-52.5613 0/0:17:16,1:16:639:1:31:0,-2.01806,-54.7415 0/0:21:21,0:21:853:0:0:0,-6.32163,-77.0808 0/1:20:14,6:14:553:6:225:-14.5815,0,-44.0918 dDocent_Contig_13202 11 . A G 269.502 . AB=0.21519;ABP=58.6715;AC=4;AF=0.5;AN=8;AO=17;CIGAR=1X;DP=79;DPB=79;DPRA=0;EPP=39.9253;EPPR=137.642;GTI=0;LEN=1;MEANALT=1;MQM=56.8235;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.882353;PAIREDR=0.951613;PAO=0;PQA=0;PQR=0;PRO=0;QA=634;QR=2370;RO=62;RPL=0;RPP=39.9253;RPPR=137.642;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:32:28,4:28:1062:4:130:-2.3844,0,-86.2387 0/1:31:22,9:22:867:9:347:-22.0679,0,-69.0122 0/1:14:11,3:11:400:3:119:-6.6487,0,-32.118 0/1:2:1,1:1:41:1:38:-3.19521,0,-3.49251 dDocent_Contig_13203 86 . G A 576.445 . AB=0.222222;ABP=33.1696;AC=4;AF=0.5;AN=8;AO=26;CIGAR=1X;DP=85;DPB=85;DPRA=0;EPP=59.4686;EPPR=131.127;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=854;QR=1980;RO=59;RPL=26;RPP=59.4686;RPPR=131.127;RPR=0;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=59;SRP=131.127;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:15:0,15:0:0:15:484:-43.8669,-4.51545,0 0/1:39:33,6:33:1102:6:196:-6.22134,0,-87.7428 0/1:6:2,4:2:69:4:138:-10.9541,0,-4.74648 0/0:25:24,1:24:809:1:36:0,-3.92747,-69.5247 dDocent_Contig_13204 28 . A T 69.6426 . AB=0.333333;ABP=5.18177;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=46;DPB=46;DPRA=0.72973;EPP=9.52472;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=58.8333;NS=4;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=0.666667;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=1675;RO=42;RPL=0;RPP=9.52472;RPPR=94.2121;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:8:8,0:8:314:0:0:0,-2.40824,-28.624 0/0:16:15,0:15:595:0:0:0,-4.51545,-53.7695 0/1:9:6,3:6:246:3:122:-8.66322,0,-19.8108 0/0:13:13,0:13:520:0:0:0,-3.91339,-44.4264 dDocent_Contig_13205 107 . N A 198.946 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=6;CIGAR=1X;DP=6;DPB=6;DPRA=0;EPP=16.0391;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=210;QR=0;RO=0;RPL=0;RPP=16.0391;RPPR=0;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:1:0,1:0:0:1:35:-3.49863,-0.30103,0 1/1:5:0,5:0:0:5:175:-16.0937,-1.50515,0 dDocent_Contig_13207 9 . C T 1045.43 . AB=0.227273;ABP=17.2236;AC=3;AF=0.375;AN=8;AO=5;CIGAR=2M1X18M;DP=81;DPB=81;DPRA=0;EPP=13.8677;EPPR=42.0968;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=4;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=0.833333;PAO=0;PQA=0;PQR=0;PRO=0;QA=161;QR=697;RO=18;RPL=0;RPP=13.8677;RPPR=42.0968;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:23:10,8,4,0,1:10:397:8,4,0,1:319,163,0,41:-21.7994,0,-30.2697,-11.5035,-19.377,-42.9903,-24.8097,-32.678,-44.1944,-57.4964,-21.4239,-29.2932,-40.8092,-54.1115,-53.8105 0|0:30:6,4,12,0,7:6:226:4,12,0,7:160,482,0,280:-42.1561,-30.7805,-48.092,-4.55957,-9.89009,-19.4626,-43.9622,-49.2961,-23.075,-62.478,-20.8946,-26.227,0,-39.4101,-37.3029 1|0:6:2,2,2,0,0:2:74:2,2,0,0:79,79,0,0:-6.37072,-0.47181,-5.91095,-0.472197,0,-5.91133,-6.97278,-6.51301,-6.51339,-13.0181,-6.97278,-6.51301,-6.51339,-13.0181,-13.0181 1|0:22:0,9,4,5,4:0:0:9,4,5,4:358,163,161,157:-41.5001,-13.4643,-10.755,-28.0452,0,-26.8411,-28.5367,-0.515178,-15.0836,-27.0316,-28.6848,-0.643547,-15.2268,-15.7248,-27.4807 dDocent_Contig_13208 24 . G C 481.774 . AB=0.666667;ABP=3.73412;AC=4;AF=0.5;AN=8;AO=2;CIGAR=1X3M;DP=32;DPB=32;DPRA=0.461538;EPP=7.35324;EPPR=29.6108;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=58.6875;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.9375;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=635;RO=16;RPL=0;RPP=7.35324;RPPR=37.7539;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=15;SRP=29.6108;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:6:0,6,0:0:0:6,0:239,0:-21.8854,-1.80618,0,-21.8854,-1.80618,-21.8854 0|1:3:1,0,2:1:40:0,2:0,81:-6.78264,-7.08367,-10.3771,0,-3.69465,-3.09259 0|1:16:8,8,0:8:317:8,0:304,0:-22.8985,0,-23.9703,-25.3068,-26.3785,-51.2983 0|0:7:7,0,0:7:278:0,0:0,0:0,-2.10721,-25.3899,-2.10721,-25.3899,-25.3899 dDocent_Contig_13209 20 . T C 167.997 . AB=0.269231;ABP=15.0369;AC=1;AF=0.125;AN=8;AO=10;CIGAR=1X;DP=136;DPB=136;DPRA=0.772358;EPP=24.725;EPPR=276.616;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=403;QR=5033;RO=126;RPL=0;RPP=24.725;RPPR=276.616;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=126;SRP=276.616;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:19,7:19:761:7:285:-18.1976,0,-60.984 0/0:44:42,2:42:1689:2:78:0,-5.84254,-144.827 0/0:41:41,0:41:1606:0:0:0,-12.3422,-144.772 0/0:25:24,1:24:977:1:40:0,-3.53007,-84.23 dDocent_Contig_13211 7 . G A 5842.17 . AB=0.865031;ABP=191.662;AC=5;AF=0.625;AN=8;AO=191;CIGAR=1X1M1X;DP=219;DPB=219;DPRA=0;EPP=417.762;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.827225;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7246;QR=917;RO=27;RPL=0;RPP=417.762;RPPR=61.6401;RPR=191;RUN=1;SAF=191;SAP=417.762;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:89:10,79:10:368:79:2998:-243.206,0,-6.6751 1|1:56:5,50:5:165:50:1878:-154.091,-1.76265,0 0|1:53:9,44:9:302:44:1676:-135.151,0,-11.5465 0|1:21:3,18:3:82:18:694:-56.4728,0,-1.32832 dDocent_Contig_13212 10 . T G 269.452 . AB=0.188235;ABP=74.7711;AC=1;AF=0.125;AN=8;AO=16;CIGAR=1X;DP=231;DPB=231;DPRA=1.74658;EPP=37.7539;EPPR=467.705;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.6729;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.962617;PAO=0;PQA=0;PQR=0;PRO=0;QA=599;QR=7901;RO=214;RPL=0;RPP=37.7539;RPPR=467.705;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=214;SRP=467.705;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:118:118,0:118:4395:0:0:0,-35.5215,-395.451 0/1:85:69,16:69:2543:16:599:-28.6442,0,-203.447 0/0:18:18,0:18:645:0:0:0,-5.41854,-58.2561 0/0:10:9,0:9:318:0:0:0,-2.70927,-28.5642 dDocent_Contig_13213 128 . C T 1212.49 . AB=0.545455;ABP=3.79993;AC=5;AF=0.625;AN=8;AO=41;CIGAR=1X;DP=61;DPB=61;DPRA=0;EPP=92.0407;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1539;QR=769;RO=20;RPL=0;RPP=92.0407;RPPR=46.4397;RPR=41;RUN=1;SAF=0;SAP=92.0407;SAR=41;SRF=0;SRP=46.4397;SRR=20;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:17:0,17:0:0:17:655:-59.2869,-5.11751,0 0/1:18:5,13:5:187:13:485:-38.5722,0,-11.774 0/1:11:7,4:7:270:4:152:-10.7379,0,-21.354 0/1:15:8,7:8:312:7:247:-18.0497,0,-23.9295 dDocent_Contig_13214 7 . G A 1604.77 . AB=0.676923;ABP=20.6827;AC=5;AF=0.625;AN=8;AO=53;CIGAR=1X;DP=74;DPB=74;DPRA=0;EPP=118.098;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.981132;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2045;QR=709;RO=21;RPL=0;RPP=118.098;RPPR=48.6112;RPR=53;RUN=1;SAF=53;SAP=118.098;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:5,5:5:134:5:193:-14.7311,0,-9.3145 1/1:9:0,9:0:0:9:348:-31.6803,-2.70927,0 0/1:32:8,24:8:281:24:923:-73.7543,0,-15.9942 0/1:23:8,15:8:294:15:581:-45.7092,0,-19.8868 dDocent_Contig_13216 47 . T A 137.416 . AB=0.333333;ABP=5.18177;AC=3;AF=0.375;AN=8;AO=5;CIGAR=1X;DP=29;DPB=29;DPRA=0.611111;EPP=13.8677;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=190;QR=966;RO=24;RPL=0;RPP=13.8677;RPPR=55.1256;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:13:13,0:13:529:0:0:0,-3.91339,-47.9569 0/1:9:6,3:6:234:3:113:-7.83014,0,-18.7193 0/0:5:5,0:5:203:0:0:0,-1.50515,-18.6531 1/1:2:0,2:0:0:2:77:-7.30914,-0.60206,0 dDocent_Contig_13217 33 . T C 531.786 . AB=0.375;ABP=8.43898;AC=4;AF=0.5;AN=8;AO=15;CIGAR=1X1M;DP=40;DPB=40;DPRA=0;EPP=35.5824;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=577;QR=670;RO=17;RPL=0;RPP=35.5824;RPPR=39.9253;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:6:5,0,1:5:199:0,1:0,39:-2.09038,-3.59553,-19.9883,0,-16.7838,-16.4828 0|1:9:3,0,6:3:120:0,6:0,224:-17.802,-18.705,-28.599,0,-10.2846,-8.47842 0|1:9:2,1,6:2:77:1,6:40,241:-19.2583,-16.5655,-22.5818,0,-3.01149,-4.50537 0|1:16:7,7,2:7:274:7,2:284,73:-21.3452,0,-20.44,-17.4976,-16.5892,-39.4152 dDocent_Contig_13218 134 . A G 78.3046 . AB=0.571429;ABP=3.32051;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X3M2X;DP=26;DPB=26;DPRA=1.10526;EPP=11.6962;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=52;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=126;QR=867;RO=22;RPL=0;RPP=11.6962;RPPR=50.7827;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=50.7827;SRR=22;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:9:9,0:9:357:0:0:0,-2.70927,-32.4937 0|0:4:4,0:4:157:0:0:0,-1.20412,-14.509 0|1:7:3,4:3:117:4:126:-9.52934,0,-8.80317 0|0:6:6,0:6:236:0:0:0,-1.80618,-21.6128 dDocent_Contig_13219 18 . A G 59.4693 . AB=0.116667;ABP=79.5909;AC=2;AF=0.25;AN=8;AO=7;CIGAR=1X3M1X;DP=60;DPB=60;DPRA=0;EPP=18.2106;EPPR=107.241;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=269;QR=1884;RO=48;RPL=0;RPP=18.2106;RPPR=107.241;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:34:29,2,3:29:1140:2,3:76,113:-0.526709,-3.02274,-96.2052,0,-87.5503,-92.8788 0|1:5:3,2,0:3:121:2,0:76,0:-5.70911,0,-9.77484,-6.6122,-10.3769,-16.6001 0|0:17:13,2,2:13:506:2,2:78,82:-2.86468,-0.376377,-41.3411,0,-35.1723,-40.9819 0|1:4:3,1,0:3:117:1,0:39,0:-2.69244,0,-9.70609,-3.59553,-10.0071,-13.213 dDocent_Contig_13220 7 . G A 112.346 . AB=0.375;ABP=5.18177;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=67;DPB=67;DPRA=0.941176;EPP=16.0391;EPPR=131.127;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.813559;PAO=0;PQA=0;PQR=0;PRO=0;QA=192;QR=1813;RO=59;RPL=0;RPP=16.0391;RPPR=131.127;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=59;SRP=131.127;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:14:14,0:14:422:0:0:0,-4.21442,-38.2671 0/0:19:18,0:18:541:0:0:0,-5.41854,-48.8475 0/0:18:18,0:18:537:0:0:0,-5.41854,-48.6048 0/1:16:9,6:9:313:6:192:-12.9336,0,-23.851 dDocent_Contig_13221 24 . C G 1149.31 . AB=0.394495;ABP=13.5489;AC=4;AF=0.5;AN=8;AO=43;CIGAR=1X;DP=109;DPB=109;DPRA=0;EPP=96.3836;EPPR=146.327;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.906977;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1708;QR=2637;RO=66;RPL=0;RPP=96.3836;RPPR=146.327;RPR=43;RUN=1;SAF=43;SAP=96.3836;SAR=0;SRF=66;SRP=146.327;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:9,16:9:369:16:614:-48.0619,0,-26.0497 0/1:38:23,15:23:921:15:611:-43.8878,0,-71.755 0/1:37:28,9:28:1119:9:361:-21.7158,0,-89.8531 0/1:9:6,3:6:228:3:122:-8.66322,0,-18.1675 dDocent_Contig_13224 43 . G A 970.073 . AB=0.571429;ABP=5.49198;AC=4;AF=0.5;AN=8;AO=33;CIGAR=1X;DP=58;DPB=58;DPRA=19;EPP=74.6689;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1291;QR=982;RO=25;RPL=0;RPP=74.6689;RPPR=57.2971;RPR=33;RUN=1;SAF=33;SAP=74.6689;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:37:9,28:9:368:28:1094:-87.6124,0,-22.3472 0/1:19:15,4:15:573:4:156:-8.69717,0,-46.1719 0/0:1:1,0:1:41:0:0:0,-0.30103,-4.09457 1/1:1:0,1:0:0:1:41:-4.09457,-0.30103,0 dDocent_Contig_13225 20 . A T 699.204 . AB=0.472727;ABP=3.36563;AC=3;AF=0.375;AN=8;AO=26;CIGAR=2X;DP=63;DPB=63;DPRA=2.29167;EPP=59.4686;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=0.615385;PAIREDR=0.72973;PAO=0;PQA=0;PQR=0;PRO=0;QA=1009;QR=1452;RO=37;RPL=0;RPP=59.4686;RPPR=83.3548;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:15:9,6:9:334:6:224:-16,0,-25.8894 0|1:24:11,13:11:440:13:509:-38.9283,0,-32.7306 0|1:16:9,7:9:355:7:276:-20.3901,0,-27.4922 0|0:8:8,0:8:323:0:0:0,-2.40824,-29.4387 dDocent_Contig_13227 41 . T C 342.583 . AB=0.226667;ABP=51.6802;AC=3;AF=0.375;AN=8;AO=18;CIGAR=1X;DP=93;DPB=93;DPRA=0;EPP=42.0968;EPPR=165.871;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.973333;PAO=0;PQA=0;PQR=0;PRO=0;QA=719;QR=2809;RO=75;RPL=0;RPP=42.0968;RPPR=165.871;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=75;SRP=165.871;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:21,7:21:784:7:284:-17.5049,0,-62.4535 0/1:34:29,5:29:1084:5:199:-8.05242,0,-87.6223 0/0:18:17,1:17:645:1:40:0,-1.42286,-54.3886 0/1:13:8,5:8:296:5:196:-14.0988,0,-23.0781 dDocent_Contig_13229 15 . C A 79.8704 . AB=0;ABP=0;AC=2;AF=0.25;AN=8;AO=2;CIGAR=1X;DP=33;DPB=33;DPRA=0.193548;EPP=7.35324;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.774194;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=1248;RO=31;RPL=0;RPP=7.35324;RPPR=70.3259;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:7:7,0:7:280:0:0:0,-2.10721,-25.5713 0/0:13:13,0:13:522:0:0:0,-3.91339,-47.3246 0/0:11:11,0:11:446:0:0:0,-3.31133,-40.4962 1/1:2:0,2:0:0:2:81:-7.68573,-0.60206,0 dDocent_Contig_13230 7 . G A 2202.52 . AB=0.555556;ABP=4.9405;AC=6;AF=0.75;AN=8;AO=71;CIGAR=1X;DP=103;DPB=103;DPRA=0;EPP=140.302;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.943662;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2711;QR=1013;RO=32;RPL=0;RPP=157.185;RPPR=72.4974;RPR=71;RUN=1;SAF=69;SAP=140.302;SAR=2;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:24:0,24:0:0:24:906:-81.8549,-7.22472,0 0/1:43:17,26:17:501:26:991:-76.5564,0,-32.4182 0/1:29:15,14:15:512:14:547:-40.8459,0,-37.6644 1/1:7:0,7:0:0:7:267:-24.3926,-2.10721,0 dDocent_Contig_13231 105 . N T 665.475 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=22;CIGAR=3X;DP=22;DPB=22;DPRA=0;EPP=50.7827;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=719;QR=0;RO=0;RPL=0;RPP=50.7827;RPPR=0;RPR=22;RUN=1;SAF=0;SAP=50.7827;SAR=22;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:7:0,7:0:0:7:243:-22.2088,-2.10721,0 1|1:1:0,1:0:0:1:14:-1.39999,-0.30103,0 1|1:11:0,11:0:0:11:359:-32.6257,-3.31133,0 1|1:3:0,3:0:0:3:103:-9.61002,-0.90309,0 dDocent_Contig_13232 205 . A G 66.8277 . AB=0.217391;ABP=18.9659;AC=2;AF=0.25;AN=8;AO=5;CIGAR=1X;DP=30;DPB=30;DPRA=3.28571;EPP=13.8677;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=181;QR=905;RO=25;RPL=5;RPP=13.8677;RPPR=57.2971;RPR=0;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=57.2971;SRR=25;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:10,3:10:366:3:111:-6.44053,0,-29.3743 0/0:1:1,0:1:37:0:0:0,-0.30103,-3.69783 0/1:10:8,2:8:294:2:70:-3.6371,0,-23.8021 0/0:6:6,0:6:208:0:0:0,-1.80618,-19.0573 dDocent_Contig_13233 40 . G A 50.0823 . AB=0.131579;ABP=47.8112;AC=2;AF=0.25;AN=8;AO=5;CIGAR=1X;DP=65;DPB=65;DPRA=1.40741;EPP=13.8677;EPPR=133.299;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=0.6;PAIREDR=0.9;PAO=0;PQA=0;PQR=0;PRO=0;QA=194;QR=2390;RO=60;RPL=0;RPP=13.8677;RPPR=133.299;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:22,4:22:864:4:154:-6.40354,0,-70.2405 0/1:12:11,1:11:435:1:40:-0.383319,0,-35.8912 0/0:21:21,0:21:848:0:0:0,-6.32163,-76.6295 0/0:6:6,0:6:243:0:0:0,-1.80618,-22.2482 dDocent_Contig_13234 107 . N G 121.313 . AB=0;ABP=0;AC=2;AF=0.5;AN=4;AO=4;CIGAR=1X;DP=5;DPB=5;DPRA=4;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=126;QR=0;RO=0;RPL=0;RPP=11.6962;RPPR=0;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:1:0,0:0:0:0:0:0,0,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:4:0,4:0:0:4:126:-11.6526,-1.20412,0 dDocent_Contig_13235 7 . G T 55.2862 . AB=0.2;ABP=14.7363;AC=2;AF=0.333334;AN=6;AO=3;CIGAR=1X2M;DP=22;DPB=22;DPRA=1.07143;EPP=9.52472;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.875;PAO=0;PQA=0;PQR=0;PRO=0;QA=41;QR=498;RO=16;RPL=0;RPP=9.52472;RPPR=37.7539;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:2:1,0,1:1:34:0,1:0,11:-0.497935,-0.798965,-3.6719,0,-3.09788,-2.79685 0|1:13:8,3,2:8:277:3,2:117,30:-7.34644,0,-21.7591,-7.75254,-20.6035,-29.6243 0|0:7:7,0,0:7:187:0,0:0,0:0,-2.10721,-17.0938,-2.10721,-17.0938,-17.0938 .:.:.:.:.:.:.:. dDocent_Contig_13237 126 . A G 199.763 . AB=0.225806;ABP=43.4978;AC=3;AF=0.375;AN=8;AO=14;CIGAR=1X;DP=89;DPB=89;DPRA=0.765432;EPP=33.4109;EPPR=165.871;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=478;QR=2545;RO=75;RPL=0;RPP=33.4109;RPPR=165.871;RPR=14;RUN=1;SAF=0;SAP=33.4109;SAR=14;SRF=0;SRP=165.871;SRR=75;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:27:27,0:27:940:0:0:0,-8.12781,-84.9158 0/1:40:32,8:32:1081:8:269:-12.4964,0,-85.5523 0/1:18:14,4:14:464:4:139:-7.43415,0,-36.657 0/1:4:2,2:2:60:2:70:-5.44328,0,-4.49445 dDocent_Contig_13241 72 . C T 802.419 . AB=0.484375;ABP=3.14602;AC=3;AF=0.375;AN=8;AO=31;CIGAR=1X;DP=68;DPB=68;DPRA=5.33333;EPP=70.3259;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=0.967742;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1154;QR=1403;RO=37;RPL=31;RPP=70.3259;RPPR=83.3548;RPR=0;RUN=1;SAF=31;SAP=70.3259;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:12,18:12:453:18:662:-50.8727,0,-32.0843 0/1:22:15,7:15:570:7:267:-17.7689,0,-45.0145 0/1:12:6,6:6:227:6:225:-16.9981,0,-17.1785 0/0:4:4,0:4:153:0:0:0,-1.20412,-14.1405 dDocent_Contig_13242 35 . G T 269.532 . AB=0.107143;ABP=40.5458;AC=0;AF=0;AN=8;AO=3;CIGAR=1X3M11D17M;DP=48;DPB=43.375;DPRA=2.33333;EPP=9.52472;EPPR=63.8115;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=119;QR=1080;RO=28;RPL=3;RPP=9.52472;RPPR=63.8115;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:6:6,0,0,0:6:234:0,0,0:0,0,0:0,-1.80618,-21.4305,-1.80618,-21.4305,-21.4305,-1.80618,-21.4305,-21.4305,-21.4305 0|0:14:7,0,4,3:7:278:0,4,3:0,122,99:-7.64634,-9.75355,-32.6813,0,-22.934,-21.7299,-1.74041,-24.6861,-14.9517,-23.783 0|0:14:8,1,0,5:8:300:1,0,5:40,0,177:-11.9694,-11.0749,-35.3591,-14.3776,-35.6602,-38.9576,0,-21.2525,-24.5503,-23.0451 0|0:14:7,2,5,0:7:268:2,5,0:79,182,0:-12.7334,-8.33087,-29.7336,0,-15.4808,-20.4793,-14.8407,-30.3356,-21.9844,-36.8394 dDocent_Contig_13243 120 . C A 181.328 . AB=0.414634;ABP=5.60547;AC=2;AF=0.25;AN=8;AO=21;CIGAR=1X;DP=71;DPB=71;DPRA=0;EPP=40.3389;EPPR=109.412;GTI=0;LEN=1;MEANALT=1.25;MQM=20.4286;MQMR=49.4286;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.714286;PAO=0;PQA=0;PQR=0;PRO=0;QA=734;QR=1549;RO=49;RPL=0;RPP=48.6112;RPPR=109.412;RPR=21;RUN=1;SAF=1;SAP=40.3389;SAR=20;SRF=0;SRP=109.412;SRR=49;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:17:16,1:16:501:1:35:0,-2.65878,-38.9463 0/1:21:7,14:7:211:14:484:-19.83,0,-8.34828 0/0:13:9,3:9:294:3:110:0,-0.641876,-22.9646 0/1:20:17,3:17:543:3:105:-0.149905,0,-38.2861 dDocent_Contig_13245 37 . C G 389.843 . AB=0.441176;ABP=4.03217;AC=2;AF=0.25;AN=8;AO=15;CIGAR=1X;DP=145;DPB=145;DPRA=0.306306;EPP=35.5824;EPPR=285.302;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=577;QR=5032;RO=130;RPL=0;RPP=35.5824;RPPR=285.302;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=130;SRP=285.302;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:49:49,0:49:1924:0:0:0,-14.7505,-173.38 0/0:62:62,0:62:2359:0:0:0,-18.6639,-212.497 0/1:23:13,10:13:514:10:406:-29.9763,0,-39.6847 0/1:11:6,5:6:235:5:171:-12.4059,0,-18.2103 dDocent_Contig_13247 107 . N C 644.309 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=20;CIGAR=1X;DP=20;DPB=20;DPRA=0;EPP=46.4397;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=694;QR=0;RO=0;RPL=0;RPP=46.4397;RPPR=0;RPR=20;RUN=1;SAF=0;SAP=46.4397;SAR=20;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:5:0,5:0:0:5:173:-15.9102,-1.50515,0 1/1:1:0,1:0:0:1:35:-3.49863,-0.30103,0 1/1:10:0,10:0:0:10:346:-31.4744,-3.0103,0 1/1:4:0,4:0:0:4:140:-12.9449,-1.20412,0 dDocent_Contig_13249 22 . A T 75.0358 . AB=0;ABP=0;AC=2;AF=0.333333;AN=6;AO=3;CIGAR=1X;DP=47;DPB=47;DPRA=0.283333;EPP=9.52472;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.954545;PAO=0;PQA=0;PQR=0;PRO=0;QA=111;QR=1437;RO=44;RPL=0;RPP=9.52472;RPPR=98.5551;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:74:-7.02588,-0.60206,0 ./.:.:.:.:.:.:.:. 0/0:30:30,0:30:971:0:0:0,-9.0309,-87.6852 0/0:15:14,1:14:466:1:37:0,-0.817621,-38.5599 dDocent_Contig_13251 7 . G A 969.409 . AB=0.545455;ABP=3.99733;AC=3;AF=0.375;AN=8;AO=31;CIGAR=1X2M1X2M1X1M1X;DP=72;DPB=72;DPRA=0;EPP=70.3259;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1.5;MQM=54.9355;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=0.516129;PAIREDR=0.833333;PAO=0;PQA=0;PQR=0;PRO=0;QA=1212;QR=1124;RO=30;RPL=0;RPP=70.3259;RPPR=68.1545;RPR=31;RUN=1;SAF=31;SAP=70.3259;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:15:5,10,0,0:5:189:10,0,0:396,0,0:-31.4843,0,-12.8589,-32.9894,-15.8692,-48.475,-32.9894,-15.8692,-48.475,-48.475 1|0:27:2,14,7,4:2:78:14,7,4:544,274,161:-53.5221,-15.5702,-17.7737,-32.1528,0,-36.4633,-44.9183,-12.8011,-29.3657,-50.1289 0|0:17:16,1,0,0:16:600:1,0,0:40,0,0:0,-1.12183,-50.3372,-4.81648,-50.6382,-53.9347,-4.81648,-50.6382,-53.9347,-53.9347 0|1:13:7,6,0,0:7:257:6,0,0:232,0,0:-17.3324,0,-19.5666,-19.4396,-21.3728,-40.4351,-19.4396,-21.3728,-40.4351,-40.4351 dDocent_Contig_13252 45 . A C 135.954 . AB=0.3;ABP=9.95901;AC=2;AF=0.25;AN=8;AO=9;CIGAR=1X;DP=77;DPB=77;DPRA=0;EPP=22.5536;EPPR=150.67;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.555556;PAIREDR=0.382353;PAO=0;PQA=0;PQR=0;PRO=0;QA=350;QR=2690;RO=68;RPL=0;RPP=22.5536;RPPR=150.67;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=68;SRP=150.67;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:6,5:6:234:5:199:-14.9767,0,-18.1135 0/0:28:26,2:26:1037:2:82:0,-0.649162,-85.8451 0/0:29:28,1:28:1097:1:30:0,-5.7303,-96.0111 0/1:9:8,1:8:322:1:39:-1.18729,0,-26.6391 dDocent_Contig_13253 7 . G A 771.32 . AB=0.0555556;ABP=95.6598;AC=0;AF=0;AN=8;AO=3;CIGAR=1X2M1X;DP=95;DPB=95;DPRA=0;EPP=9.52472;EPPR=109.412;GTI=0;LEN=1;MEANALT=3.5;MQM=56.3333;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=116;QR=1584;RO=49;RPL=0;RPP=9.52472;RPPR=109.412;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:31:19,0,4,8:19:652:0,4,8:0,127,315:-20.2522,-25.9718,-78.886,-16.217,-69.1087,-67.9046,0,-52.9583,-43.1807,-50.5501 0|0:11:4,2,0,5:4:128:2,0,5:77,0,198:-15.0832,-9.96791,-19.6437,-16.2873,-20.2458,-26.5723,0,-3.92414,-10.2681,-8.76298 0|0:43:26,1,3,11:26:804:1,3,11:39,110,408:-25.584,-30.2369,-94.4179,-24.9406,-86.2463,-88.5165,0,-61.3287,-56.0281,-61.1915 0|0:10:0,0,2,7:0:0:0,2,7:0,80,217:-23.6098,-23.6098,-23.6098,-17.384,-17.384,-16.7819,-6.29047,-6.29047,0,-4.18326 dDocent_Contig_13254 7 . G T 1061.4 . AB=0.0810811;ABP=59.4099;AC=0;AF=0;AN=8;AO=3;CIGAR=1X3M1X;DP=58;DPB=58;DPRA=12.3333;EPP=9.52472;EPPR=42.0968;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=93;QR=632;RO=18;RPL=0;RPP=9.52472;RPPR=42.0968;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:37:6,3,28:6:214:3,28:93,1044:-83.6953,-78.0422,-94.5801,0,-10.0251,-9.04606 0|0:3:3,0,0:3:112:0,0:0,0:0,-0.90309,-10.4467,-0.90309,-10.4467,-10.4467 0|0:9:2,0,7:2:74:0,7:0,279:-22.7717,-23.3737,-29.4214,0,-6.42371,-4.3165 0|0:9:7,0,2:7:232:0,2:0,82:-5.07041,-7.17762,-25.8784,0,-19.0929,-18.4908 dDocent_Contig_13256 7 . G C 31.9281 . AB=0.119403;ABP=87.3088;AC=2;AF=0.25;AN=8;AO=9;CIGAR=1X;DP=120;DPB=120;DPRA=1.77193;EPP=22.5536;EPPR=244.044;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.955;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.963964;PAO=0;PQA=0;PQR=0;PRO=0;QA=326;QR=3478;RO=111;RPL=0;RPP=22.5536;RPPR=244.044;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=111;SRP=244.044;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:34:33,1:33:1018:1:39:0,-6.33846,-87.9854 0/1:37:32,5:32:980:5:174:-4.85786,0,-77.3242 0/1:30:27,3:27:872:3:113:-1.50807,0,-69.7337 0/0:19:19,0:19:608:0:0:0,-5.71957,-55.0084 dDocent_Contig_13257 23 . A C 439.059 . AB=0.575758;ABP=4.65535;AC=2;AF=0.25;AN=8;AO=21;CIGAR=2X;DP=69;DPB=69;DPRA=0;EPP=48.6112;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=46.7143;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.714286;PAIREDR=0.625;PAO=0;PQA=0;PQR=0;PRO=0;QA=840;QR=1903;RO=48;RPL=0;RPP=48.6112;RPPR=107.241;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:13:4,9:4:141:9:358:-28.627,0,-9.11839 0|1:20:10,10:10:389:10:400:-18.6764,0,-29.3404 0|0:21:20,1:20:808:1:41:0,-2.22846,-68.9434 0|0:15:14,1:14:565:1:41:0,-0.422278,-47.0992 dDocent_Contig_13258 64 . T A 623.61 . AB=0.560976;ABP=4.33437;AC=2;AF=0.25;AN=8;AO=24;CIGAR=1X;DP=82;DPB=82;DPRA=0.805556;EPP=55.1256;EPPR=128.956;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=0.416667;PAIREDR=0.827586;PAO=0;PQA=0;PQR=0;PRO=0;QA=895;QR=2164;RO=58;RPL=18;RPP=16.0391;RPPR=6.75422;RPR=6;RUN=1;SAF=18;SAP=16.0391;SAR=6;SRF=34;SRP=6.75422;SRR=24;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:17:16,1:16:596:1:35:0,-1.61888,-50.4786 0/1:12:5,7:5:186:7:270:-21.0529,0,-13.4878 0/1:29:13,16:13:489:16:590:-44.706,0,-35.6239 0/0:24:24,0:24:893:0:0:0,-7.22472,-80.6897 dDocent_Contig_13259 23 . A G 380.484 . AB=0.108108;ABP=101.724;AC=0;AF=0;AN=8;AO=8;CIGAR=1X3M2X1M1X;DP=74;DPB=74;DPRA=0;EPP=12.7819;EPPR=87.8997;GTI=0;LEN=1;MEANALT=2.5;MQM=59.125;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=0.875;PAIREDR=0.953488;PAO=0;PQA=0;PQR=0;PRO=0;QA=315;QR=1664;RO=43;RPL=0;RPP=20.3821;RPPR=96.3836;RPR=8;RUN=1;SAF=7;SAP=12.7819;SAR=1;SRF=42;SRP=87.8997;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:31:21,2,8,0:21:829:2,8,0:81,302,0:-18.4058,-18.0428,-85.6679,0,-61.5254,-65.7972,-24.7274,-86.2699,-68.2054,-92.95 0|0:8:2,1,2,3:2:80:1,2,3:40,75,111:-8.47087,-5.78871,-12.0858,-2.93079,-6.246,-8.9265,0,-3.31501,-0.463913,-5.69393 0|0:24:13,4,2,5:13:498:4,2,5:154,77,184:-11.1223,-2.38811,-42.0575,-8.71192,-36.9389,-48.9812,0,-28.222,-34.5433,-39.3604 0|0:11:7,1,0,3:7:257:1,0,3:40,0,116:-7.41097,-6.2198,-26.9113,-9.51818,-27.2123,-30.5099,0,-17.6784,-20.9776,-20.0745 dDocent_Contig_13261 31 . A T 779.714 . AB=0.446154;ABP=4.64726;AC=4;AF=0.5;AN=8;AO=29;CIGAR=1X;DP=65;DPB=65;DPRA=0;EPP=65.983;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=55.6552;MQMR=59.0833;NS=4;NUMALT=1;ODDS=0;PAIRED=0.896552;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1155;QR=1448;RO=36;RPL=0;RPP=65.983;RPPR=81.1833;RPR=29;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:6:5,1:5:200:1:41:-2.28839,0,-16.5734 0/1:13:11,2:11:437:2:81:-3.77234,0,-35.772 0/1:17:6,11:6:243:11:440:-34.8038,0,-17.1307 0/1:29:14,15:14:568:15:593:-44.4505,0,-42.6841 dDocent_Contig_13262 50 . G T 628.114 . AB=0.724138;ABP=15.6647;AC=2;AF=0.333333;AN=6;AO=21;CIGAR=1X;DP=40;DPB=40;DPRA=1.31818;EPP=48.6112;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=819;QR=736;RO=19;RPL=21;RPP=48.6112;RPPR=44.2683;RPR=0;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:7,14:7:278:14:543:-42.8891,0,-19.0682 ./.:.:.:.:.:.:.:. 0/0:11:11,0:11:420:0:0:0,-3.31133,-38.145 0/1:8:1,7:1:38:7:276:-22.8002,0,-1.38903 dDocent_Contig_13263 107 . N A 328.947 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=11;CIGAR=1X;DP=11;DPB=11;DPRA=0;EPP=26.8965;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=355;QR=0;RO=0;RPL=0;RPP=26.8965;RPPR=0;RPR=11;RUN=1;SAF=0;SAP=26.8965;SAR=11;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:100:-9.33053,-0.90309,0 1/1:8:0,8:0:0:8:255:-23.2628,-2.40824,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_13264 186 . C T 338.232 . AB=0.433333;ABP=4.16842;AC=2;AF=0.25;AN=8;AO=13;CIGAR=1X;DP=71;DPB=71;DPRA=0.731707;EPP=31.2394;EPPR=126.784;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=504;QR=2217;RO=57;RPL=13;RPP=31.2394;RPPR=126.784;RPR=0;RUN=1;SAF=0;SAP=31.2394;SAR=13;SRF=0;SRP=126.784;SRR=57;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:17:17,0:17:673:0:0:0,-5.11751,-60.9001 0/0:24:24,0:24:938:0:0:0,-7.22472,-84.7204 0/1:16:9,6:9:343:6:231:-16.4991,0,-26.5777 0/1:14:7,7:7:263:7:273:-20.7221,0,-19.8135 dDocent_Contig_13265 10 . A G 1156.39 . AB=0.49;ABP=3.09716;AC=4;AF=0.5;AN=8;AO=49;CIGAR=2M1X;DP=100;DPB=100;DPRA=0;EPP=109.412;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=55.5714;MQMR=59.4706;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=0.877551;PAIREDR=0.941176;PAO=0;PQA=0;PQR=0;PRO=0;QA=1726;QR=1706;RO=51;RPL=0;RPP=109.412;RPPR=113.755;RPR=49;RUN=1;SAF=49;SAP=109.412;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:19:8,11:8:267:11:408:-31.3451,0,-18.6281 0|1:26:13,13:13:480:13:461:-32.097,0,-35.7138 0|1:21:3,18:3:95:18:628:-48.8727,0,-2.5386 0|1:34:27,7:27:864:7:229:-10.692,0,-67.802 dDocent_Contig_13266 33 . C A 102.244 . AB=0.4;ABP=3.87889;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=21;DPB=21;DPRA=1.81818;EPP=11.6962;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.882353;PAO=0;PQA=0;PQR=0;PRO=0;QA=163;QR=679;RO=17;RPL=0;RPP=11.6962;RPPR=39.9253;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:8:8,0:8:321:0:0:0,-2.40824,-29.2581 0/0:3:3,0:3:117:0:0:0,-0.90309,-10.9086 0/1:10:6,4:6:241:4:163:-12.0481,0,-19.0564 ./.:.:.:.:.:.:.:. dDocent_Contig_13267 24 . G A 265.74 . AB=0.276596;ABP=23.3852;AC=3;AF=0.375;AN=8;AO=13;CIGAR=1X;DP=59;DPB=59;DPRA=1.30556;EPP=31.2394;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=500;QR=1755;RO=46;RPL=0;RPP=31.2394;RPPR=102.898;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:6,4:6:233:4:155:-11.315,0,-18.329 0/1:14:12,2:12:464:2:75:-2.90592,0,-37.8957 0/0:12:12,0:12:447:0:0:0,-3.61236,-40.5725 0/1:23:16,7:16:611:7:270:-17.7377,0,-48.4039 dDocent_Contig_13268 147 . A G 73.5727 . AB=0.210526;ABP=16.8392;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=38;DPB=38;DPRA=2;EPP=11.6962;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=158;QR=1365;RO=34;RPL=0;RPP=11.6962;RPPR=76.8404;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=76.8404;SRR=34;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:15,4:15:594:4:158:-8.87979,0,-48.0738 0/0:17:17,0:17:690:0:0:0,-5.11751,-62.4291 ./.:.:.:.:.:.:.:. 0/0:2:2,0:2:81:0:0:0,-0.60206,-7.68573 dDocent_Contig_13269 122 . T C 455.437 . AB=0.190476;ABP=20.4855;AC=6;AF=0.75;AN=8;AO=18;CIGAR=1X;DP=35;DPB=35;DPRA=0;EPP=42.0968;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=57.5556;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.888889;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=602;QR=578;RO=17;RPL=0;RPP=42.0968;RPPR=39.9253;RPR=18;RUN=1;SAF=0;SAP=42.0968;SAR=18;SRF=0;SRP=39.9253;SRR=17;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:8:0,8:0:0:8:260:-23.7162,-2.40824,0 0/1:12:10,2:10:342:2:68:-2.73302,0,-27.4988 0/1:9:7,2:7:236:2:70:-3.93813,0,-18.8609 1/1:6:0,6:0:0:6:204:-18.5334,-1.80618,0 dDocent_Contig_13270 32 . G A 671.166 . AB=0.351351;ABP=17.2129;AC=3;AF=0.375;AN=8;AO=26;CIGAR=1X;DP=87;DPB=87;DPRA=1.89744;EPP=59.4686;EPPR=135.47;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.983607;PAO=0;PQA=0;PQR=0;PRO=0;QA=1041;QR=2432;RO=61;RPL=0;RPP=59.4686;RPPR=135.47;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=61;SRP=135.47;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:11,16:11:430:16:638:-49.6279,0,-30.9249 0/1:32:25,7:25:1000:7:281:-16.0296,0,-80.664 0/0:13:13,0:13:513:0:0:0,-3.91339,-46.5164 0/1:15:12,3:12:489:3:122:-6.85704,0,-39.8459 dDocent_Contig_13271 7 . G T 92.2377 . AB=0.21875;ABP=24.9965;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X;DP=83;DPB=83;DPRA=4.27778;EPP=22.5536;EPPR=163.699;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=275;QR=2383;RO=74;RPL=0;RPP=22.5536;RPPR=163.699;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=74;SRP=163.699;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:6:6,0:6:193:0:0:0,-1.80618,-17.6838 0/1:32:25,7:25:854:7:225:-10.9227,0,-67.5153 0/0:25:24,1:24:704:1:39:0,-3.62919,-59.7245 0/0:20:19,1:19:632:1:11:0,-4.9206,-56.0769 dDocent_Contig_13275 16 . C T 13910.2 . AB=0.705584;ABP=219.97;AC=6;AF=0.75;AN=8;AO=417;CIGAR=1X1M;DP=591;DPB=591;DPRA=0;EPP=908.514;EPPR=178.9;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.908873;PAIREDR=0.82716;PAO=0;PQA=0;PQR=0;PRO=0;QA=16580;QR=3174;RO=81;RPL=0;RPP=908.514;RPPR=178.9;RPR=417;RUN=1;SAF=417;SAP=908.514;SAR=0;SRF=81;SRP=178.9;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:149:22,20,107:22:849:20,107:776,4235:-341.909,-284.787,-348.47,0,-5.95782,-37.4947 1|1:177:24,31,122:24:947:31,122:1241,4854:-416.744,-321.737,-390.32,-24.3219,0,-65.509 0|1:128:22,18,88:22:865:18,88:707,3506:-282.077,-230.556,-296.284,0,-13.0034,-44.6572 1|1:137:13,24,100:13:513:24,100:922,3985:-357.685,-285.93,-320.912,-33.4532,0,-45.5612 dDocent_Contig_13278 112 . A G 312.923 . AB=0.4375;ABP=4.09604;AC=2;AF=0.25;AN=8;AO=14;CIGAR=1X;DP=51;DPB=51;DPRA=1.68421;EPP=33.4109;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.0714286;PAIREDR=0.972973;PAO=0;PQA=0;PQR=0;PRO=0;QA=485;QR=1299;RO=37;RPL=0;RPP=33.4109;RPPR=83.3548;RPR=14;RUN=1;SAF=0;SAP=33.4109;SAR=14;SRF=0;SRP=83.3548;SRR=37;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:10:10,0:10:358:0:0:0,-3.0103,-32.5627 0/1:16:9,7:9:322:7:250:-18.0302,0,-24.5077 0/1:16:9,7:9:321:7:235:-16.6601,0,-24.4165 0/0:9:9,0:9:298:0:0:0,-2.70927,-27.1398 dDocent_Contig_13279 79 . T A 100.974 . AB=0;ABP=0;AC=2;AF=0.25;AN=8;AO=3;CIGAR=1X;DP=32;DPB=32;DPRA=0.310345;EPP=9.52472;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.38813e-21;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=105;QR=1065;RO=29;RPL=3;RPP=9.52472;RPPR=65.983;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:13:13,0:13:477:0:0:0,-3.91339,-43.2729 0/0:12:12,0:12:442:0:0:0,-3.61236,-40.1254 1/1:3:0,3:0:0:3:105:-9.79616,-0.90309,0 0/0:4:4,0:4:146:0:0:0,-1.20412,-13.4977 dDocent_Contig_13282 32 . A G 559.576 . AB=0.512821;ABP=3.06598;AC=2;AF=0.25;AN=8;AO=20;CIGAR=1X;DP=46;DPB=46;DPRA=5.57143;EPP=46.4397;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=782;QR=1016;RO=26;RPL=0;RPP=46.4397;RPPR=59.4686;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:9,16:9:354:16:623:-48.878,0,-24.6951 0/1:14:10,4:10:398:4:159:-10.4773,0,-31.9651 0/0:3:3,0:3:116:0:0:0,-0.90309,-10.817 0/0:4:4,0:4:148:0:0:0,-1.20412,-13.6792 dDocent_Contig_13283 39 . G A 175.813 . AB=0.227273;ABP=31.4368;AC=3;AF=0.375;AN=8;AO=10;CIGAR=1X;DP=53;DPB=53;DPRA=1.62963;EPP=24.725;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=390;QR=1708;RO=43;RPL=0;RPP=24.725;RPPR=96.3836;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:15,6:15:608:6:240:-15.6534,0,-48.7357 0/0:9:9,0:9:358:0:0:0,-2.70927,-32.5796 0/1:16:14,2:14:548:2:82:-2.9632,0,-44.8361 0/1:7:5,2:5:194:2:68:-4.3505,0,-15.7225 dDocent_Contig_13284 9 . T A 231.693 . AB=0.333333;ABP=12.42;AC=3;AF=0.5;AN=6;AO=13;CIGAR=1X;DP=39;DPB=39;DPRA=0;EPP=31.2394;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=428;QR=810;RO=26;RPL=0;RPP=31.2394;RPPR=59.4686;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:14,5:14:412:5:150:-8.07279,0,-31.6414 0/1:18:11,7:11:381:7:241:-16.6024,0,-29.2026 0/1:2:1,1:1:17:1:37:-3.09577,0,-1.09792 ./.:.:.:.:.:.:.:. dDocent_Contig_13286 15 . A T 131.61 . AB=0.214286;ABP=12.937;AC=3;AF=0.375;AN=8;AO=3;CIGAR=1M2I2M1X;DP=78;DPB=81.5;DPRA=0.411765;EPP=9.52472;EPPR=148.499;GTI=0;LEN=1;MEANALT=1.5;MQM=51;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=120;QR=2602;RO=67;RPL=0;RPP=9.52472;RPPR=148.499;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=67;SRP=148.499;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:11:7,3,1:7:282:3,1:120,41:-7.7722,0,-22.3361,-6.51241,-19.8736,-29.4569 0|1:47:42,5,0:42:1627:5,0:200,0:-4.23171,0,-132.532,-16.875,-134.037,-150.514 0|0:17:17,0,0:17:659:0,0:0,0:0,-5.11751,-59.6416,-5.11751,-59.6416,-59.6416 0|1:3:1,0,2:1:34:0,2:0,79:-6.52105,-6.82208,-9.56311,0,-3.09788,-2.49582 dDocent_Contig_13287 9 . T C 203.102 . AB=0.244898;ABP=30.7077;AC=3;AF=0.375;AN=8;AO=15;CIGAR=2X;DP=89;DPB=89;DPRA=0;EPP=35.5824;EPPR=161.528;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.739726;PAO=0;PQA=0;PQR=0;PRO=0;QA=553;QR=2460;RO=73;RPL=0;RPP=35.5824;RPPR=161.528;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=73;SRP=161.528;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:15:11,3:11:386:3:104:-5.33973,0,-30.7539 0|1:22:16,6:16:533:6:216:-13.1631,0,-41.6597 0|1:12:9,3:9:315:3:116:-7.20518,0,-25.0735 0|0:40:37,3:37:1226:3:117:0,-1.13099,-99.7036 dDocent_Contig_13288 10 . G T 35.1603 . AB=0.125;ABP=51.8684;AC=3;AF=0.375;AN=8;AO=5;CIGAR=1X;DP=42;DPB=42;DPRA=6.66667;EPP=13.8677;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=194;QR=1310;RO=37;RPL=0;RPP=13.8677;RPPR=83.3548;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:11,1:11:396:1:40:-0.383319,0,-32.3613 0/1:21:19,2:19:657:2:77:-0.987512,0,-53.1131 0/1:7:5,2:5:181:2:77:-5.20162,0,-14.5338 0/0:2:2,0:2:76:0:0:0,-0.60206,-7.21467 dDocent_Contig_13289 184 . T A 501.608 . AB=0.392157;ABP=8.16222;AC=4;AF=0.5;AN=8;AO=20;CIGAR=1X;DP=51;DPB=51;DPRA=0;EPP=46.4397;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=793;QR=1210;RO=31;RPL=20;RPP=46.4397;RPPR=70.3259;RPR=0;RUN=1;SAF=0;SAP=46.4397;SAR=20;SRF=0;SRP=70.3259;SRR=31;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:4:1,3:1:39:3:122:-10.1684,0,-2.69244 0/1:19:10,9:10:383:9:346:-25.7734,0,-29.094 0/1:20:15,5:15:586:5:204:-12.7234,0,-47.0543 0/1:8:5,3:5:202:3:121:-8.87196,0,-16.1536 dDocent_Contig_13290 22 . T C 1901.83 . AB=0.416667;ABP=3.73412;AC=5;AF=0.625;AN=8;AO=54;CIGAR=1X;DP=73;DPB=73;DPRA=1.69444;EPP=120.27;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.981481;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2158;QR=771;RO=19;RPL=0;RPP=120.27;RPPR=44.2683;RPR=54;RUN=1;SAF=54;SAP=120.27;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:44:0,44:0:0:44:1761:-158.709,-13.2453,0 0/1:12:7,5:7:283:5:194:-14.2185,0,-22.2306 0/0:12:12,0:12:488:0:0:0,-3.61236,-44.2715 1/1:5:0,5:0:0:5:203:-18.6531,-1.50515,0 dDocent_Contig_13291 47 . C A 128.972 . AB=0.625;ABP=4.09604;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=43;DPB=43;DPRA=0.685714;EPP=13.8677;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=185;QR=1541;RO=38;RPL=0;RPP=13.8677;RPPR=85.5263;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:20:20,0:20:812:0:0:0,-6.0206,-73.3946 0/0:12:12,0:12:488:0:0:0,-3.61236,-44.2704 0/1:8:3,5:3:122:5:185:-14.596,0,-8.96425 0/0:3:3,0:3:119:0:0:0,-0.90309,-11.0952 dDocent_Contig_13292 10 . G A 350.642 . AB=0.411765;ABP=5.30951;AC=2;AF=0.25;AN=8;AO=17;CIGAR=1X;DP=71;DPB=71;DPRA=0;EPP=39.9253;EPPR=120.27;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.470588;PAIREDR=0.407407;PAO=0;PQA=0;PQR=0;PRO=0;QA=626;QR=1931;RO=54;RPL=0;RPP=39.9253;RPPR=120.27;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:10,1:10:357:1:18:0,-1.51136,-30.6628 0/0:26:24,2:24:893:2:75:0,-0.706682,-73.5593 0/1:23:13,10:13:425:10:379:-27.5399,0,-31.627 0/1:11:7,4:7:256:4:154:-10.922,0,-20.0792 dDocent_Contig_13293 56 . C T 61.4599 . AB=0.2;ABP=18.6449;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=47;DPB=47;DPRA=2.22222;EPP=11.6962;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.5;PAIREDR=0.883721;PAO=0;PQA=0;PQR=0;PRO=0;QA=150;QR=1724;RO=43;RPL=4;RPP=11.6962;RPPR=96.3836;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:10:10,0:10:405:0:0:0,-3.0103,-36.8089 0/0:2:2,0:2:81:0:0:0,-0.60206,-7.68573 0/0:15:15,0:15:601:0:0:0,-4.51545,-54.4297 0/1:20:16,4:16:637:4:150:-7.84469,0,-51.6416 dDocent_Contig_13294 23 . T G 57.5166 . AB=0.25;ABP=9.52472;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=54;DPB=54;DPRA=0.571429;EPP=9.52472;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.862745;PAO=0;PQA=0;PQR=0;PRO=0;QA=120;QR=2022;RO=51;RPL=0;RPP=9.52472;RPPR=113.755;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:36:36,0:36:1435:0:0:0,-10.8371,-129.404 0/0:6:6,0:6:240:0:0:0,-1.80618,-21.9758 ./.:.:.:.:.:.:.:. 0/1:12:9,3:9:347:3:120:-7.57554,0,-27.9711 dDocent_Contig_13295 127 . T A 40.6027 . AB=0.230769;ABP=11.1951;AC=1;AF=0.125;AN=8;AO=3;CIGAR=2X;DP=48;DPB=48;DPRA=1.11429;EPP=9.52472;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=40;MQMR=40;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=108;QR=1651;RO=45;RPL=0;RPP=9.52472;RPPR=100.727;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=100.727;SRR=45;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:18:18,0:18:676:0:0:0,-5.41854,-57.7898 0|0:6:6,0:6:218:0:0:0,-1.80618,-19.1264 0|0:11:11,0:11:396:0:0:0,-3.31133,-34.5036 0|1:13:10,3:10:361:3:108:-5.75918,0,-27.5811 dDocent_Contig_13297 195 . G A 574.579 . AB=0.415094;ABP=6.32897;AC=4;AF=0.5;AN=8;AO=22;CIGAR=1X;DP=53;DPB=53;DPRA=0;EPP=50.7827;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=881;QR=1251;RO=31;RPL=22;RPP=50.7827;RPPR=70.3259;RPR=0;RUN=1;SAF=0;SAP=50.7827;SAR=22;SRF=0;SRP=70.3259;SRR=31;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:13,12:13:528:12:484:-36.3841,0,-40.3411 0/1:17:11,6:11:444:6:239:-16.7649,0,-35.1981 0/1:7:4,3:4:156:3:117:-8.80262,0,-12.3069 0/1:4:3,1:3:123:1:41:-2.89045,0,-10.2607 dDocent_Contig_13298 24 . G C 263.806 . AB=0.240741;ABP=34.5369;AC=4;AF=0.5;AN=8;AO=13;CIGAR=1X;DP=54;DPB=54;DPRA=0;EPP=31.2394;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.926829;PAO=0;PQA=0;PQR=0;PRO=0;QA=524;QR=1571;RO=41;RPL=0;RPP=31.2394;RPPR=92.0407;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:19,5:19:722:5:201:-11.2462,0,-58.0713 0/1:13:10,3:10:391:3:121:-7.3666,0,-31.6329 0/1:11:10,1:10:377:1:40:-0.684349,0,-30.9681 0/1:6:2,4:2:81:4:162:-13.1606,0,-5.87955 dDocent_Contig_13299 110 . A T 638.354 . AB=0.454545;ABP=3.99733;AC=6;AF=0.75;AN=8;AO=27;CIGAR=1X2M;DP=57;DPB=57;DPRA=0;EPP=61.6401;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1.5;MQM=58;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0.92;PAO=0;PQA=0;PQR=0;PRO=0;QA=899;QR=863;RO=25;RPL=0;RPP=61.6401;RPPR=57.2971;RPR=27;RUN=1;SAF=0;SAP=61.6401;SAR=27;SRF=0;SRP=57.2971;SRR=25;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:25:13,2,10:13:453:2,10:68,340:-23.6658,-22.0632,-58.307,0,-31.3335,-33.8381 1|1:11:2,3,6:2:69:3,6:105,210:-19.4231,-11.482,-16.1834,-2.94247,0,-6.74002 0|1:19:10,0,9:10:341:0,9:0,293:-20.9678,-23.9781,-51.6555,0,-28.0101,-25.3008 1|1:2:0,0,2:0:0:0,2:0,56:-5.1759,-5.1759,-5.1759,-0.60206,-0.60206,0 dDocent_Contig_13300 20 . C A 157.106 . AB=0.333333;ABP=8.80089;AC=3;AF=0.375;AN=8;AO=9;CIGAR=1X;DP=40;DPB=40;DPRA=0;EPP=22.5536;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=0.111111;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=343;QR=1256;RO=31;RPL=0;RPP=22.5536;RPPR=70.3259;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:13,5:13:524:5:179:-11.0324,0,-42.0887 0/0:16:15,1:15:610:1:41:0,-0.721913,-51.1433 0/1:4:2,2:2:82:2:82:-6.57556,0,-6.57556 0/1:2:1,1:1:40:1:41:-3.49251,0,-3.39362 dDocent_Contig_13302 108 . C T 317.67 . AB=0.44;ABP=3.79203;AC=4;AF=0.666667;AN=6;AO=14;CIGAR=1X;DP=28;DPB=28;DPRA=0;EPP=33.4109;EPPR=33.4109;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=456;QR=471;RO=14;RPL=0;RPP=33.4109;RPPR=33.4109;RPR=14;RUN=1;SAF=0;SAP=33.4109;SAR=14;SRF=0;SRP=33.4109;SRR=14;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 0/1:19:9,10:9:304:10:326:-23.9371,0,-21.9694 1/1:3:0,3:0:0:3:100:-9.3306,-0.90309,0 0/1:6:5,1:5:167:1:30:-1.19339,0,-13.5532 dDocent_Contig_13304 12 . T A 254.332 . AB=0.282609;ABP=21.8927;AC=4;AF=0.5;AN=8;AO=13;CIGAR=1X;DP=46;DPB=46;DPRA=0;EPP=31.2394;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.923077;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=502;QR=1307;RO=33;RPL=0;RPP=31.2394;RPPR=74.6689;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:7,4:7:278:4:156:-11.1051,0,-22.0783 0/1:18:13,5:13:505:5:194:-12.412,0,-40.373 0/1:6:4,2:4:162:2:79:-5.69145,0,-13.1608 0/1:11:9,2:9:362:2:73:-3.61997,0,-29.6332 dDocent_Contig_13306 8 . G C 260.821 . AB=0.307692;ABP=15.538;AC=2;AF=0.25;AN=8;AO=12;CIGAR=1X2M1X;DP=52;DPB=52;DPRA=3;EPP=29.068;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.875;PAO=0;PQA=0;PQR=0;PRO=0;QA=450;QR=1308;RO=40;RPL=0;RPP=29.068;RPPR=89.8692;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:14:8,6:8:250:6:218:-15.7573,0,-18.5906 0|1:25:19,6:19:609:6:232:-13.7227,0,-47.5839 0|0:5:5,0:5:169:0:0:0,-1.50515,-15.5424 0|0:8:8,0:8:280:0:0:0,-2.40824,-25.5383 dDocent_Contig_13308 7 . G A 542.042 . AB=0.097561;ABP=60.6867;AC=4;AF=0.5;AN=8;AO=4;CIGAR=1X1M;DP=84;DPB=84;DPRA=0;EPP=11.6962;EPPR=122.441;GTI=0;LEN=1;MEANALT=2;MQM=58.75;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.75;PAIREDR=0.981818;PAO=0;PQA=0;PQR=0;PRO=0;QA=155;QR=1858;RO=55;RPL=0;RPP=11.6962;RPPR=122.441;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:18:9,8,1:9:299:8,1:307,39:-22.48,0,-21.7259,-21.9893,-20.9291,-45.8464 0|1:23:18,2,3:18:597:2,3:69,116:-4.13483,-3.97094,-51.6027,0,-42.6687,-47.366 0|1:33:21,11,0:21:744:11,0:411,0:-27.5642,0,-57.5197,-33.8858,-60.831,-94.4855 0|1:10:7,3,0:7:218:3,0:112,0:-7.42235,0,-16.916,-9.52956,-17.8191,-26.9944 dDocent_Contig_13310 9 . T G 887.648 . AB=0.589286;ABP=6.88793;AC=3;AF=0.5;AN=6;AO=33;CIGAR=1X;DP=56;DPB=56;DPRA=0;EPP=74.6689;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=59.8485;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1206;QR=695;RO=23;RPL=0;RPP=74.6689;RPPR=52.9542;RPR=33;RUN=1;SAF=33;SAP=74.6689;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 0/1:29:11,18:11:329:18:662:-51.1771,0,-21.1676 0/1:12:10,2:10:314:2:74:-3.40909,0,-24.9505 0/1:15:2,13:2:52:13:470:-38.1153,0,-0.423228 dDocent_Contig_13312 19 . C A 275.528 . AB=0.266667;ABP=24.2907;AC=2;AF=0.25;AN=8;AO=12;CIGAR=1X;DP=71;DPB=71;DPRA=1.73077;EPP=29.068;EPPR=131.127;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=486;QR=2366;RO=59;RPL=0;RPP=29.068;RPPR=131.127;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=59;SRP=131.127;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:9,8:9:366:8:322:-24.2297,0,-28.1876 0/1:28:24,4:24:950:4:164:-6.72106,0,-77.3662 0/0:12:12,0:12:484:0:0:0,-3.61236,-43.9098 0/0:14:14,0:14:566:0:0:0,-4.21442,-51.2824 dDocent_Contig_13313 7 . G T 137.949 . AB=0.263158;ABP=12.2676;AC=4;AF=0.5;AN=8;AO=7;CIGAR=1X;DP=32;DPB=32;DPRA=0.636364;EPP=18.2106;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=59.2857;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=243;QR=741;RO=25;RPL=0;RPP=18.2106;RPPR=57.2971;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:11,0:11:335:0:0:0,-3.31133,-30.4406 0/1:13:10,3:10:300:3:89:-4.38001,0,-23.3724 0/1:6:4,2:4:106:2:76:-5.40863,0,-7.99646 1/1:2:0,2:0:0:2:78:-7.40347,-0.60206,0 dDocent_Contig_13314 130 . T A 84.6918 . AB=0.5;ABP=3.0103;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=43;DPB=43;DPRA=0.685714;EPP=11.6962;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=136;QR=1352;RO=39;RPL=0;RPP=11.6962;RPPR=87.6977;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=87.6977;SRR=39;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:22:22,0:22:758:0:0:0,-6.62266,-68.5381 0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827 0/1:8:4,4:4:138:4:136:-10.1676,0,-10.3518 0/0:12:12,0:12:420:0:0:0,-3.61236,-38.134 dDocent_Contig_13316 75 . T C 562.632 . AB=0.423729;ABP=5.99147;AC=3;AF=0.375;AN=8;AO=25;CIGAR=1X;DP=90;DPB=90;DPRA=0.634409;EPP=57.2971;EPPR=144.156;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=870;QR=1800;RO=65;RPL=25;RPP=57.2971;RPPR=144.156;RPR=0;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=65;SRP=144.156;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:44:22,22:22:630:22:765:-55.9264,0,-43.7296 0/0:31:31,0:31:838:0:0:0,-9.33193,-75.68 0/1:5:4,1:4:95:1:35:-1.99348,0,-7.28131 0/1:10:8,2:8:237:2:70:-3.6371,0,-18.612 dDocent_Contig_13317 21 . A C 147.294 . AB=0.210526;ABP=30.668;AC=2;AF=0.25;AN=8;AO=8;CIGAR=1X;DP=47;DPB=47;DPRA=4.22222;EPP=20.3821;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=320;QR=1534;RO=39;RPL=0;RPP=20.3821;RPPR=87.6977;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:21,4:21:822:4:163:-7.53268,0,-66.7696 0/1:13:9,4:9:353:4:157:-10.5945,0,-28.212 0/0:3:3,0:3:119:0:0:0,-0.90309,-11.095 0/0:6:6,0:6:240:0:0:0,-1.80618,-21.9757 dDocent_Contig_13319 42 . G A 305.425 . AB=0.4;ABP=5.61607;AC=2;AF=0.25;AN=8;AO=12;CIGAR=1X;DP=60;DPB=60;DPRA=1;EPP=29.068;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=469;QR=1906;RO=48;RPL=0;RPP=29.068;RPPR=107.241;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:13,2:13:497:2:72:-2.31887,0,-40.5459 0/1:15:5,10:5:201:10:397:-31.5721,0,-13.9551 0/0:28:28,0:28:1129:0:0:0,-8.42884,-101.892 0/0:2:2,0:2:79:0:0:0,-0.60206,-7.49763 dDocent_Contig_13320 12 . G T 271.045 . AB=0.255319;ABP=27.4509;AC=1;AF=0.125;AN=8;AO=12;CIGAR=1X;DP=140;DPB=140;DPRA=1.51613;EPP=29.068;EPPR=280.959;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.992188;PAO=0;PQA=0;PQR=0;PRO=0;QA=470;QR=4907;RO=128;RPL=0;RPP=29.068;RPPR=280.959;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=128;SRP=280.959;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:47:35,12:35:1317:12:470:-28.5024,0,-104.649 0/0:60:60,0:60:2299:0:0:0,-18.0618,-207.106 0/0:21:21,0:21:833:0:0:0,-6.32163,-75.288 0/0:12:12,0:12:458:0:0:0,-3.61236,-41.568 dDocent_Contig_13321 112 . T C 85.3673 . AB=0.444444;ABP=3.25157;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=33;DPB=33;DPRA=1.125;EPP=11.6962;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=140;QR=977;RO=29;RPL=0;RPP=11.6962;RPPR=65.983;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=65.983;SRR=29;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5,0:5:167:0:0:0,-1.50515,-15.3588 0/1:9:5,4:5:164:4:140:-10.2357,0,-12.3743 0/0:12:12,0:12:408:0:0:0,-3.61236,-37.0473 0/0:7:7,0:7:238:0:0:0,-2.10721,-21.7528 dDocent_Contig_13322 132 . T A 77.7291 . AB=0.285714;ABP=5.80219;AC=3;AF=0.5;AN=6;AO=4;CIGAR=1X;DP=17;DPB=17;DPRA=0.5625;EPP=11.6962;EPPR=31.2394;GTI=0;LEN=1;MEANALT=1;MQM=36.75;MQMR=60;NS=3;NUMALT=1;ODDS=8.67362e-19;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=140;QR=465;RO=13;RPL=0;RPP=11.6962;RPPR=31.2394;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=31.2394;SRR=13;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:7:5,2:5:179:2:70:-4.39271,0,-14.3532 1/1:2:0,2:0:0:2:70:-4.90211,-0.60206,0 0/0:8:8,0:8:286:0:0:0,-2.40824,-26.0856 ./.:.:.:.:.:.:.:. dDocent_Contig_13323 46 . A G 162.637 . AB=0.35;ABP=6.91895;AC=2;AF=0.25;AN=8;AO=7;CIGAR=1X;DP=26;DPB=26;DPRA=3.33333;EPP=18.2106;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=277;QR=740;RO=19;RPL=0;RPP=18.2106;RPPR=44.2683;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:8:6,2:6:240:2:75:-4.71135,0,-19.5663 0/1:12:7,5:7:281:5:202:-14.9497,0,-22.0502 0/0:4:4,0:4:138:0:0:0,-1.20412,-12.7538 0/0:2:2,0:2:81:0:0:0,-0.60206,-7.68573 dDocent_Contig_13324 10 . G A 99.2913 . AB=0.214286;ABP=22.8638;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=69;DPB=69;DPRA=1.875;EPP=18.2106;EPPR=137.642;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=259;QR=2299;RO=62;RPL=0;RPP=18.2106;RPPR=137.642;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:12:12,0:12:467:0:0:0,-3.61236,-42.3787 0/0:12:12,0:12:437:0:0:0,-3.61236,-39.6586 0/1:28:22,6:22:821:6:219:-11.628,0,-65.7711 0/0:17:16,1:16:574:1:40:0,-1.12183,-47.9856 dDocent_Contig_13326 61 . A C 384.574 . AB=0.310345;ABP=21.1309;AC=4;AF=0.5;AN=8;AO=18;CIGAR=1X;DP=58;DPB=58;DPRA=0;EPP=42.0968;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.833333;PAIREDR=0.975;PAO=0;PQA=0;PQR=0;PRO=0;QA=687;QR=1437;RO=40;RPL=18;RPP=42.0968;RPPR=89.8692;RPR=0;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:14,5:14:509:5:191:-11.8388,0,-40.4298 0/1:25:19,6:19:673:6:234:-13.9054,0,-53.3678 0/1:11:6,5:6:218:5:188:-13.9714,0,-16.6615 0/1:3:1,2:1:37:2:74:-6.12268,0,-2.79474 dDocent_Contig_13327 10 . A G 2696.29 . AB=0.0693069;ABP=165.742;AC=0;AF=0;AN=8;AO=7;CIGAR=1X1M1X6M;DP=203;DPB=203;DPRA=0;EPP=18.2106;EPPR=74.6689;GTI=0;LEN=1;MEANALT=6;MQM=60;MQMR=60;NS=4;NUMALT=5;ODDS=0;PAIRED=1;PAIREDR=0.909091;PAO=0;PQA=0;PQR=0;PRO=0;QA=241;QR=1260;RO=33;RPL=0;RPP=18.2106;RPPR=74.6689;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:76:10,2,4,15,26,16:10:395:2,4,15,26,16:76,147,578,1023,624:-99.9326,-96.7097,-128.615,-90.9262,-117.2,-122.229,-55.4809,-81.7559,-75.9724,-83.4735,-18.784,-45.061,-39.2775,-3.82925,-43.4675,-51.6527,-77.9279,-72.1445,-36.6986,0,-79.3446 0|0:60:5,5,0,6,30,9:5:189:5,0,6,30,9:183,0,226,1161,351:-107.227,-94.4656,-108.452,-108.732,-109.957,-124.224,-90.2349,-91.4598,-105.727,-103.92,-13.3614,-14.589,-28.8537,-10.3557,-19.8228,-79.8827,-81.1077,-95.3745,-76.8768,0,-92.6652 0|0:42:13,0,0,9,6,13:13:490:0,0,9,6,13:0,0,344,237,511:-38.1284,-42.0418,-82.1957,-42.0418,-82.1957,-82.1957,-13.947,-54.1015,-54.1015,-51.3922,-22.5353,-62.6909,-62.6909,-34.5955,-60.8847,0,-40.1597,-40.1597,-12.0617,-20.6513,-36.2463 0|0:25:5,1,3,10,5,1:5:186:1,3,10,5,1:38,94,390,199,39:-31.7317,-30.1203,-45.0398,-25.6942,-37.7957,-40.0088,-1.17697,-13.2826,-8.85972,-13.3895,-16.8447,-28.9495,-24.5226,0,-30.5612,-30.0305,-42.1345,-37.7059,-13.1926,-28.8596,-44.9501 dDocent_Contig_13328 13 . G T 90.0007 . AB=0.208333;ABP=20.744;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=118;DPB=118;DPRA=1.03448;EPP=20.3821;EPPR=241.872;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=295;QR=4057;RO=110;RPL=0;RPP=20.3821;RPPR=241.872;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=110;SRP=241.872;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:38:38,0:38:1393:0:0:0,-11.4391,-125.654 0/0:36:33,3:33:1212:3:100:0,-1.50758,-100.053 0/1:24:19,5:19:702:5:195:-10.699,0,-56.2754 0/0:20:20,0:20:750:0:0:0,-6.0206,-67.8247 dDocent_Contig_13329 7 . G A 82.0402 . AB=0.266667;ABP=10.1038;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=22;DPB=22;DPRA=6.42857;EPP=11.6962;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=156;QR=642;RO=18;RPL=0;RPP=11.6962;RPPR=42.0968;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:1:1,0:1:39:0:0:0,-0.30103,-3.89656 0/1:15:11,4:11:388:4:156:-9.90184,0,-30.7343 0/0:5:5,0:5:178:0:0:0,-1.50515,-16.3653 0/0:1:1,0:1:37:0:0:0,-0.30103,-3.69783 dDocent_Contig_13332 61 . C T 754.386 . AB=0.264286;ABP=70.5741;AC=4;AF=0.5;AN=8;AO=37;CIGAR=1X;DP=140;DPB=140;DPRA=0;EPP=83.3548;EPPR=226.672;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1373;QR=4097;RO=103;RPL=37;RPP=83.3548;RPPR=226.672;RPR=0;RUN=1;SAF=37;SAP=83.3548;SAR=0;SRF=103;SRP=226.672;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:71:54,17:54:2142:17:617:-34.4785,0,-171.589 0/1:37:29,8:29:1153:8:303:-16.4888,0,-92.9128 0/1:24:14,10:14:558:10:375:-26.8746,0,-43.336 0/1:8:6,2:6:244:2:78:-4.99454,0,-19.9306 dDocent_Contig_13333 25 . G A 301.315 . AB=0;ABP=0;AC=2;AF=0.25;AN=8;AO=8;CIGAR=1X;DP=55;DPB=55;DPRA=0.510638;EPP=20.3821;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=324;QR=1861;RO=47;RPL=0;RPP=20.3821;RPPR=105.07;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:8:0,8:0:0:8:324:-29.5294,-2.40824,0 0/0:10:10,0:10:405:0:0:0,-3.0103,-36.81 0/0:6:6,0:6:224:0:0:0,-1.80618,-20.5132 0/0:31:31,0:31:1232:0:0:0,-9.33193,-111.152 dDocent_Contig_13334 25 . C A 121.427 . AB=0;ABP=0;AC=0;AF=0;AN=8;AO=3;CIGAR=3X3M1X;DP=63;DPB=63;DPRA=1.17647;EPP=9.52472;EPPR=120.27;GTI=0;LEN=1;MEANALT=2;MQM=9;MQMR=57.5;NS=4;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0.87037;PAO=0;PQA=0;PQR=0;PRO=0;QA=96;QR=1891;RO=54;RPL=0;RPP=9.52472;RPPR=120.27;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:15:15,0,0:15:541:0,0:0,0:0,-4.51545,-42.3197,-4.51545,-42.3197,-42.3197 0|0:20:16,3,0:16:551:3,0:96,0:0,-3.49004,-47.3346,-4.81648,-48.2377,-49.7209 0|0:19:19,0,0:19:659:0,0:0,0:0,-5.71957,-59.629,-5.71957,-59.629,-59.629 0|0:9:4,0,5:4:140:0,5:0,180:-13.8417,-15.0458,-26.4324,0,-11.7408,-10.2357 dDocent_Contig_13335 109 . G A 46.427 . AB=0.3;ABP=6.48466;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=74;DPB=74;DPRA=0.46875;EPP=9.52472;EPPR=155.013;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=97;QR=2263;RO=70;RPL=0;RPP=9.52472;RPPR=155.013;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=155.013;SRR=70;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:7,3:7:196:3:97:-6.04063,0,-14.9049 0/0:15:14,0:14:472:0:0:0,-4.21442,-42.7059 0/0:21:21,0:21:679:0:0:0,-6.32163,-61.4144 0/0:28:28,0:28:916:0:0:0,-8.42884,-82.7404 dDocent_Contig_13336 22 . C T 43.2858 . AB=0.133333;ABP=38.0434;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=126;DPB=126;DPRA=0.826087;EPP=13.8677;EPPR=265.758;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=203;QR=4817;RO=121;RPL=0;RPP=13.8677;RPPR=265.758;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=121;SRP=265.758;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:27:26,1:26:1040:1:40:0,-4.13213,-89.8939 0/0:29:29,0:29:1171:0:0:0,-8.72987,-105.668 0/0:40:40,0:40:1593:0:0:0,-12.0412,-143.606 0/1:30:26,4:26:1013:4:163:-6.02753,0,-82.4312 dDocent_Contig_13337 9 . C T 71.8607 . AB=0.4;ABP=3.87889;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=37;DPB=37;DPRA=1.11111;EPP=11.6962;EPPR=72.4974;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=59.1875;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.9375;PAO=0;PQA=0;PQR=0;PRO=0;QA=128;QR=1148;RO=32;RPL=0;RPP=11.6962;RPPR=72.4974;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:9:9,0:9:343:0:0:0,-2.70927,-31.2275 0/0:14:14,0:14:489:0:0:0,-4.21442,-44.3294 0/0:4:4,0:4:151:0:0:0,-1.20412,-13.9578 0/1:10:5,4:5:165:4:128:-8.88497,0,-11.7893 dDocent_Contig_13338 9 . C T 83.0758 . AB=0.25;ABP=18.2106;AC=2;AF=0.25;AN=8;AO=7;CIGAR=1X;DP=36;DPB=36;DPRA=3.5;EPP=18.2106;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.931034;PAO=0;PQA=0;PQR=0;PRO=0;QA=217;QR=1012;RO=29;RPL=0;RPP=18.2106;RPPR=65.983;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:8,3:8:299:3:84:-4.52461,0,-23.9532 0/0:2:2,0:2:54:0:0:0,-0.60206,-5.12672 0/0:6:6,0:6:205:0:0:0,-1.80618,-18.7816 0/1:17:13,4:13:454:4:133:-7.18029,0,-36.0682 dDocent_Contig_13339 107 . N G 123.911 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=7.37776;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=134;QR=0;RO=0;RPL=0;RPP=11.6962;RPPR=0;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:4:0,4:0:0:4:134:-12.3909,-1.20412,0 dDocent_Contig_13340 59 . T C 793.299 . AB=0.354167;ABP=20.744;AC=4;AF=0.5;AN=8;AO=34;CIGAR=1X1M1X;DP=96;DPB=96;DPRA=0;EPP=76.8404;EPPR=137.642;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1269;QR=2238;RO=62;RPL=34;RPP=76.8404;RPPR=137.642;RPR=0;RUN=1;SAF=34;SAP=76.8404;SAR=0;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:38:33,5:33:1177:5:186:-5.66225,0,-94.7908 0|1:20:11,9:11:414:9:342:-25.1166,0,-31.5902 0|1:23:14,9:14:513:9:329:-23.0343,0,-39.5839 0|1:15:4,11:4:134:11:412:-32.9146,0,-7.87474 dDocent_Contig_13341 39 . G A 176.643 . AB=0.321429;ABP=10.7656;AC=2;AF=0.25;AN=8;AO=9;CIGAR=1X;DP=63;DPB=63;DPRA=0.8;EPP=22.5536;EPPR=120.27;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.666667;PAIREDR=0.833333;PAO=0;PQA=0;PQR=0;PRO=0;QA=320;QR=1946;RO=54;RPL=0;RPP=22.5536;RPPR=120.27;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:26:26,0:26:942:0:0:0,-7.82678,-85.0861 0/1:7:4,3:4:152:3:103:-7.50231,0,-11.9417 0/1:21:15,6:15:527:6:217:-13.56,0,-41.4325 0/0:9:9,0:9:325:0:0:0,-2.70927,-29.5953 dDocent_Contig_13342 32 . T A 2325.31 . AB=0.482759;ABP=3.45957;AC=4;AF=0.5;AN=8;AO=84;CIGAR=1X;DP=174;DPB=174;DPRA=0;EPP=185.414;EPPR=198.443;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3234;QR=3468;RO=90;RPL=0;RPP=185.414;RPPR=198.443;RPR=84;RUN=1;SAF=84;SAP=185.414;SAR=0;SRF=90;SRP=198.443;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:79:31,48:31:1201:48:1845:-142.49,0,-84.5987 0/1:35:24,11:24:927:11:403:-26.0689,0,-73.2055 0/1:21:15,6:15:583:6:234:-15.1065,0,-46.4858 0/1:39:20,19:20:757:19:752:-56.2636,0,-56.7095 dDocent_Contig_13344 98 . N C 183.723 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=6;CIGAR=1X;DP=6;DPB=6;DPRA=0;EPP=16.0391;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=1.69407e-21;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=187;QR=0;RO=0;RPL=6;RPP=16.0391;RPPR=0;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:56:-5.31935,-0.60206,0 1/1:3:0,3:0:0:3:97:-9.05103,-0.90309,0 1/1:1:0,1:0:0:1:34:-3.39891,-0.30103,0 ./.:.:.:.:.:.:.:. dDocent_Contig_13345 11 . A T 306.425 . AB=0.226667;ABP=51.6802;AC=4;AF=0.5;AN=8;AO=17;CIGAR=2X;DP=75;DPB=75;DPRA=0;EPP=39.9253;EPPR=128.956;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=657;QR=2256;RO=58;RPL=0;RPP=39.9253;RPPR=128.956;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:18:14,4:14:554:4:157:-9.08938,0,-44.7844 0|1:27:21,6:21:841:6:234:-13.3012,0,-67.8758 0|1:21:18,3:18:667:3:119:-4.77376,0,-54.031 0|1:9:5,4:5:194:4:147:-10.8759,0,-15.1234 dDocent_Contig_13346 50 . T G 2024.53 . AB=0.734375;ABP=33.5466;AC=5;AF=0.625;AN=8;AO=64;CIGAR=1X;DP=82;DPB=82;DPRA=0;EPP=141.985;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2554;QR=723;RO=18;RPL=64;RPP=141.985;RPPR=42.0968;RPR=0;RUN=1;SAF=64;SAP=141.985;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:10,19:10:398:19:758:-59.8124,0,-27.4487 1/1:18:1,17:1:41:17:677:-57.1606,-1.32397,0 0/1:19:5,14:5:204:14:559:-44.9338,0,-13.0245 0/1:16:2,14:2:80:14:560:-45.9259,0,-2.77509 dDocent_Contig_13348 43 . T A 610.94 . AB=0.5;ABP=3.0103;AC=4;AF=0.5;AN=8;AO=22;CIGAR=1X1M;DP=44;DPB=44;DPRA=0;EPP=50.7827;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=882;QR=728;RO=18;RPL=0;RPP=50.7827;RPPR=42.0968;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:17:6,4,7:6:243:4,7:140,282:-21.4703,-11.9099,-30.7442,0,-8.70651,-17.9632 0|1:18:9,0,9:9:365:0,9:0,356:-26.9825,-29.6917,-59.7974,0,-30.5058,-27.7965 0|1:6:2,0,4:2:79:0,4:0,164:-13.3437,-13.9458,-20.4414,0,-6.89518,-5.69106 0|1:3:1,0,2:1:41:0,2:0,80:-6.68848,-6.98951,-10.3769,0,-3.79354,-3.19148 dDocent_Contig_13350 21 . G T 405.251 . AB=0.518519;ABP=3.09072;AC=2;AF=0.25;AN=8;AO=14;CIGAR=1X;DP=45;DPB=45;DPRA=1.5;EPP=33.4109;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=568;QR=1217;RO=31;RPL=0;RPP=33.4109;RPPR=70.3259;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:7,13:7:282:13:528:-41.8463,0,-19.7324 0/0:8:8,0:8:321:0:0:0,-2.40824,-29.2585 0/0:10:10,0:10:395:0:0:0,-3.0103,-35.9059 0/1:7:6,1:6:219:1:40:-1.88847,0,-17.9516 dDocent_Contig_13351 27 . C T 69.5021 . AB=0.235294;ABP=13.3567;AC=2;AF=0.25;AN=8;AO=4;CIGAR=1X;DP=30;DPB=30;DPRA=1.30769;EPP=11.6962;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=0.884615;PAO=0;PQA=0;PQR=0;PRO=0;QA=163;QR=1030;RO=26;RPL=0;RPP=11.6962;RPPR=59.4686;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:8:8,0:8:323:0:0:0,-2.40824,-29.4384 0/1:10:8,2:8:320:2:82:-4.76938,0,-26.1559 0/1:7:5,2:5:183:2:81:-5.57852,0,-14.7159 0/0:5:5,0:5:204:0:0:0,-1.50515,-18.744 dDocent_Contig_13352 19 . A T 110.694 . AB=0.5;ABP=3.0103;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=41;DPB=41;DPRA=0.727273;EPP=11.6962;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.972973;PAO=0;PQA=0;PQR=0;PRO=0;QA=161;QR=1455;RO=37;RPL=0;RPP=11.6962;RPPR=83.3548;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:8:4,4:4:152:4:161:-12.467,0,-11.6382 0/0:2:2,0:2:81:0:0:0,-0.60206,-7.68573 0/0:15:15,0:15:586:0:0:0,-4.51545,-53.0761 0/0:16:16,0:16:636:0:0:0,-4.81648,-57.5718 dDocent_Contig_13353 56 . A T 116.694 . AB=0.183673;ABP=45.5977;AC=3;AF=0.375;AN=8;AO=9;CIGAR=1X;DP=54;DPB=54;DPRA=3.26667;EPP=22.5536;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.977778;PAO=0;PQA=0;PQR=0;PRO=0;QA=334;QR=1808;RO=45;RPL=9;RPP=22.5536;RPPR=100.727;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:20,6:20:807:6:227:-12.9611,0,-65.1196 0/1:18:16,2:16:647:2:73:-1.51153,0,-53.1444 0/1:5:4,1:4:160:1:34:-1.89376,0,-13.2783 0/0:5:5,0:5:194:0:0:0,-1.50515,-17.83 dDocent_Contig_13354 159 . G A 121.605 . AB=0.214286;ABP=32.7905;AC=3;AF=0.375;AN=8;AO=9;CIGAR=1X;DP=86;DPB=86;DPRA=0.318182;EPP=22.5536;EPPR=170.214;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=323;QR=2954;RO=77;RPL=9;RPP=22.5536;RPPR=170.214;RPR=0;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=170.214;SRR=77;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:25,3:25:959:3:114:-2.20297,0,-78.1783 0/0:44:44,0:44:1689:0:0:0,-13.2453,-152.24 0/1:10:7,3:7:266:3:105:-6.78151,0,-21.2883 0/1:4:1,3:1:40:3:104:-8.4958,0,-2.79156 dDocent_Contig_13355 10 . T A 481.461 . AB=0.311475;ABP=21.8416;AC=4;AF=0.5;AN=8;AO=22;CIGAR=1X;DP=97;DPB=97;DPRA=0;EPP=50.7827;EPPR=165.871;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.986667;PAO=0;PQA=0;PQR=0;PRO=0;QA=804;QR=2754;RO=75;RPL=0;RPP=50.7827;RPPR=165.871;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=75;SRP=165.871;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:34:33,1:33:1211:1:39:0,-6.33846,-105.364 0/1:29:21,8:21:793:8:289:-17.6236,0,-62.9574 0/1:32:21,11:21:750:11:398:-26.5167,0,-58.1658 1/1:2:0,2:0:0:2:78:-7.40347,-0.60206,0 dDocent_Contig_13356 107 . N T 619.912 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=19;CIGAR=1X;DP=19;DPB=19;DPRA=0;EPP=44.2683;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=672;QR=0;RO=0;RPL=0;RPP=44.2683;RPPR=0;RPR=19;RUN=1;SAF=0;SAP=44.2683;SAR=19;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:108:-10.0751,-0.90309,0 1/1:5:0,5:0:0:5:173:-15.9097,-1.50515,0 1/1:11:0,11:0:0:11:391:-35.5291,-3.31133,0 dDocent_Contig_13359 141 . G A 167.908 . AB=0.380952;ABP=5.59539;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=43;DPB=43;DPRA=2.86364;EPP=20.3821;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=272;QR=1209;RO=34;RPL=0;RPP=20.3821;RPPR=76.8404;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=76.8404;SRR=34;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:17:16,0:16:568:0:0:0,-4.81648,-51.353 0/1:21:13,8:13:458:8:272:-18.4891,0,-35.2303 0/0:4:4,0:4:148:0:0:0,-1.20412,-13.682 0/0:1:1,0:1:35:0:0:0,-0.30103,-3.49863 dDocent_Contig_13360 62 . G C 1660.18 . AB=0.705128;ABP=31.5178;AC=4;AF=0.5;AN=8;AO=55;CIGAR=3M1X;DP=78;DPB=78;DPRA=0;EPP=122.441;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2173;QR=871;RO=22;RPL=55;RPP=122.441;RPPR=50.7827;RPR=0;RUN=1;SAF=55;SAP=122.441;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:16:6,10:6:240:10:390:-30.6385,0,-17.1595 0|1:47:13,33:13:513:33:1310:-103.908,0,-32.2598 0|1:10:2,8:2:81:8:309:-25.1599,0,-4.67543 0|1:5:1,4:1:37:4:164:-13.6447,0,-2.19268 dDocent_Contig_13363 109 . A G 43.099 . AB=0.3;ABP=6.48466;AC=2;AF=0.25;AN=8;AO=3;CIGAR=1X2M1X;DP=19;DPB=19;DPRA=1.11111;EPP=9.52472;EPPR=33.4109;GTI=0;LEN=1;MEANALT=1.5;MQM=59.6667;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=0.666667;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=101;QR=451;RO=14;RPL=0;RPP=9.52472;RPPR=33.4109;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=33.4109;SRR=14;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:6:5,1:5:159:1:32:-1.39295,0,-12.8186 0|0:8:8,0:8:262:0:0:0,-2.40824,-23.9008 0|1:4:1,2:1:30:2:69:-5.3411,0,-1.80136 0|0:1:0,0:0:0:0:0:0,0,0 dDocent_Contig_13364 26 . A T 154.448 . AB=0.28;ABP=13.5202;AC=2;AF=0.25;AN=8;AO=9;CIGAR=1X;DP=66;DPB=66;DPRA=10.6667;EPP=22.5536;EPPR=126.784;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=364;QR=2263;RO=57;RPL=0;RPP=22.5536;RPPR=126.784;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:39:37,2:37:1458:2:80:0,-4.14838,-123.876 0/1:20:14,6:14:565:6:244:-16.3182,0,-45.1724 0/0:2:2,0:2:79:0:0:0,-0.60206,-7.49724 0/1:5:4,1:4:161:1:40:-2.49053,0,-13.3701 dDocent_Contig_13365 117 . A G 356.44 . AB=0.428571;ABP=4.87156;AC=3;AF=0.375;AN=8;AO=18;CIGAR=1X;DP=44;DPB=44;DPRA=7;EPP=42.0968;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=47.3889;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.166667;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=601;QR=923;RO=26;RPL=0;RPP=42.0968;RPPR=59.4686;RPR=18;RUN=1;SAF=0;SAP=42.0968;SAR=18;SRF=0;SRP=59.4686;SRR=26;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:9,7:9:319:7:242:-16.9725,0,-24.2354 0/1:14:12,2:12:427:2:69:-2.32595,0,-34.5539 0/1:12:3,9:3:106:9:290:-21.6947,0,-6.2768 0/0:2:2,0:2:71:0:0:0,-0.60206,-6.74206 dDocent_Contig_13367 15 . G T 711.844 . AB=0.056338;ABP=124.399;AC=0;AF=0;AN=8;AO=4;CIGAR=4M1X1M;DP=158;DPB=178.667;DPRA=1.775;EPP=11.6962;EPPR=267.93;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=158;QR=4764;RO=122;RPL=0;RPP=11.6962;RPPR=267.93;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=122;SRP=267.93;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:71:42,25,4:42:1668:25,4:954,158:-65.5946,0,-129.796,-65.2341,-124.32,-201.36 0|0:7:4,3,0:4:150:3,0:119,0:-8.9878,0,-11.7545,-10.1919,-12.6575,-22.4625 0|0:48:46,1,0:46:1774:1,0:39,0:0,-10.6514,-155.991,-13.8474,-156.292,-159.498 0|0:32:30,2,0:30:1172:2,0:82,0:0,-1.85328,-97.9837,-9.0309,-98.5857,-105.355 dDocent_Contig_13368 7 . G C 3143.87 . AB=0.406593;ABP=16.8027;AC=3;AF=0.375;AN=8;AO=74;CIGAR=1X3M1X;DP=182;DPB=182;DPRA=0;EPP=163.699;EPPR=128.956;GTI=0;LEN=1;MEANALT=2.75;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2829;QR=2051;RO=58;RPL=0;RPP=163.699;RPPR=128.956;RPR=74;RUN=1;SAF=74;SAP=163.699;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:66:0,41,24:0:0:41,24:1573,928:-205.395,-76.2796,-63.9373,-129.177,0,-121.953 0|0:71:41,10,20:41:1455:10,20:385,746:-48.7106,-29.437,-144.939,0,-86.8825,-112.48 0|1:23:15,5,2:15:522:5,2:187,81:-10.8001,0,-40.9162,-8.62559,-35.7355,-50.4533 0|1:22:2,18,1:2:74:18,1:684,40:-55.5201,0,-0.645073,-52.8258,-2.75526,-58.5779 dDocent_Contig_13371 1 . N G 76.8682 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:81:-7.68573,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_13372 39 . T C 274.088 . AB=0.34375;ABP=9.79615;AC=2;AF=0.25;AN=8;AO=11;CIGAR=1X;DP=65;DPB=65;DPRA=0.969697;EPP=26.8965;EPPR=120.27;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=441;QR=2134;RO=54;RPL=0;RPP=26.8965;RPPR=120.27;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:26:26,0:26:1012:0:0:0,-7.82678,-91.3679 0/1:27:19,8:19:761:8:323:-21.3103,0,-60.6829 0/1:5:2,3:2:79:3:118:-9.49643,0,-5.99209 0/0:7:7,0:7:282:0:0:0,-2.10721,-25.7526 dDocent_Contig_13373 173 . C A 102.194 . AB=0.16;ABP=53.2147;AC=3;AF=0.375;AN=8;AO=8;CIGAR=1X;DP=56;DPB=56;DPRA=2.77778;EPP=20.3821;EPPR=105.07;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=326;QR=1875;RO=47;RPL=8;RPP=20.3821;RPPR=105.07;RPR=0;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=105.07;SRR=47;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:8:6,2:6:246:2:81:-5.27749,0,-20.1119 0/1:32:27,4:27:1078:4:164:-5.66408,0,-87.8744 0/0:6:6,0:6:232:0:0:0,-1.80618,-21.2475 0/1:10:8,2:8:319:2:81:-4.67543,0,-26.0657 dDocent_Contig_13374 140 . A G 2126.75 . AB=0.586207;ABP=12.3701;AC=4;AF=0.5;AN=8;AO=85;CIGAR=1X;DP=145;DPB=145;DPRA=0;EPP=187.585;EPPR=133.299;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=0.952941;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2916;QR=2095;RO=60;RPL=0;RPP=187.585;RPPR=133.299;RPR=85;RUN=1;SAF=0;SAP=187.585;SAR=85;SRF=0;SRP=133.299;SRR=60;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:64:29,35:29:1005:35:1174:-86.6913,0,-71.4952 0/1:29:14,15:14:491:15:525:-38.8514,0,-35.7929 0/1:34:6,28:6:210:28:973:-77.6489,0,-9.00731 0/1:18:11,7:11:389:7:244:-16.8815,0,-29.9296 dDocent_Contig_13375 107 . N G 167.86 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=5;CIGAR=1X;DP=5;DPB=5;DPRA=0;EPP=13.8677;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=52.4;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=176;QR=0;RO=0;RPL=0;RPP=13.8677;RPPR=0;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1:0,1:0:0:1:35:-3.49457,-0.30103,0 ./.:.:.:.:.:.:.:. 1/1:4:0,4:0:0:4:141:-12.9891,-1.20412,0 ./.:.:.:.:.:.:.:. dDocent_Contig_13376 8 . C T 86.1651 . AB=0.232877;ABP=48.2543;AC=2;AF=0.25;AN=8;AO=22;CIGAR=1X1M1X;DP=139;DPB=139;DPRA=0;EPP=50.7827;EPPR=254.901;GTI=0;LEN=1;MEANALT=1.25;MQM=23.0909;MQMR=59.7069;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=0;PAIREDR=0.724138;PAO=0;PQA=0;PQR=0;PRO=0;QA=789;QR=4124;RO=116;RPL=0;RPP=50.7827;RPPR=254.901;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=116;SRP=254.901;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:25:19,6:19:708:6:204:-4.85659,0,-56.522 0|1:48:36,11:36:1254:11:392:-7.15766,0,-98.6084 0|0:45:42,3:42:1517:3:115:0,-7.14211,-130.022 0|0:21:19,2:19:645:2:78:0,-1.26247,-53.2941 dDocent_Contig_13377 37 . T A 264.235 . AB=0.407407;ABP=5.02092;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=34;DPB=34;DPRA=1.92857;EPP=19.0002;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.272727;PAIREDR=0.652174;PAO=0;PQA=0;PQR=0;PRO=0;QA=415;QR=825;RO=23;RPL=2;RPP=12.6832;RPPR=52.9542;RPR=9;RUN=1;SAF=10;SAP=19.0002;SAR=1;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 0/1:18:13,5:13:469:5:187:-11.7714,0,-37.1289 0/1:9:3,6:3:109:6:228:-18.1749,0,-7.45816 0/0:7:7,0:7:247:0:0:0,-2.10721,-22.5715 dDocent_Contig_13378 18 . C A 380.601 . AB=0.289474;ABP=17.6392;AC=5;AF=0.625;AN=8;AO=15;CIGAR=1X;DP=42;DPB=42;DPRA=0;EPP=35.5824;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.466667;PAIREDR=0.814815;PAO=0;PQA=0;PQR=0;PRO=0;QA=593;QR=1095;RO=27;RPL=0;RPP=35.5824;RPPR=61.6401;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:9,3:9:365:3:121:-7.66763,0,-29.6021 0/1:6:4,2:4:161:2:80:-5.78539,0,-13.0693 0/1:20:14,6:14:569:6:236:-15.5891,0,-45.5313 1/1:4:0,4:0:0:4:156:-14.4158,-1.20412,0 dDocent_Contig_13379 25 . C A 360.866 . AB=0.24;ABP=17.6895;AC=1;AF=0.125;AN=8;AO=6;CIGAR=12M1X1M;DP=57;DPB=44.1429;DPRA=0;EPP=16.0391;EPPR=79.0118;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.771429;PAO=0;PQA=0;PQR=0;PRO=0;QA=246;QR=1380;RO=35;RPL=0;RPP=16.0391;RPPR=79.0118;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:12:7,4,0:7:279:4,0:141,0:-9.34242,0,-21.7797,-11.4496,-22.9838,-34.4484 0|0:9:6,3,0:6:233:3,0:99,0:-6.52635,0,-18.6285,-8.33253,-19.5316,-27.5149 0|0:11:6,5,0:6:238:5,0:167,0:-12.0458,0,-18.4832,-13.852,-19.9883,-33.4781 0|1:25:16,3,6:16:630:3,6:86,246:-15.57,-13.5942,-64.5081,0,-45.1023,-50.1124 dDocent_Contig_13380 17 . A C 351.878 . AB=0.153846;ABP=16.5402;AC=0;AF=0;AN=8;AO=2;CIGAR=1X1M1X;DP=87;DPB=87;DPRA=0.351351;EPP=7.35324;EPPR=150.67;GTI=0;LEN=1;MEANALT=2;MQM=38;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=80;QR=2711;RO=68;RPL=0;RPP=7.35324;RPPR=150.67;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=68;SRP=150.67;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:37:35,0,2:35:1404:0,2:0,79:0,-10.536,-126.222,-3.64087,-119.722,-119.12 0|0:25:18,0,7:18:714:0,7:0,281:-18.1364,-23.555,-82.3214,0,-59.166,-57.0588 0|0:13:5,2,6:5:203:2,6:80,244:-18.6571,-14.3235,-30.4635,0,-10.9387,-14.9698 0|0:12:10,0,2:10:390:0,2:0,78:-3.79042,-6.80072,-38.8566,0,-32.4455,-31.8434 dDocent_Contig_13385 92 . A G 376.286 . AB=0;ABP=0;AC=2;AF=0.333333;AN=6;AO=13;CIGAR=1X;DP=27;DPB=27;DPRA=2.15385;EPP=31.2394;EPPR=33.4109;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=448;QR=483;RO=14;RPL=13;RPP=31.2394;RPPR=33.4109;RPR=0;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=14;SRP=33.4109;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:14:1,13:1:35:13:448:-37.1512,-0.715791,0 0/0:5:5,0:5:175:0:0:0,-1.50515,-16.0937 0/0:8:8,0:8:273:0:0:0,-2.40824,-24.9024 dDocent_Contig_13387 29 . G C 79.9061 . AB=0.140351;ABP=67.0497;AC=3;AF=0.375;AN=8;AO=8;CIGAR=1X;DP=81;DPB=81;DPRA=0.791667;EPP=20.3821;EPPR=161.528;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.875;PAIREDR=0.890411;PAO=0;PQA=0;PQR=0;PRO=0;QA=323;QR=2824;RO=73;RPL=0;RPP=20.3821;RPPR=161.528;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=73;SRP=161.528;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:18,2:18:688:2:82:-1.75908,0,-56.23 0/1:23:20,3:20:784:3:120:-4.264,0,-63.9599 0/0:24:24,0:24:933:0:0:0,-7.22472,-84.2794 0/1:14:11,3:11:419:3:121:-7.06578,0,-33.8476 dDocent_Contig_13388 51 . C A 305.774 . AB=0.222222;ABP=27.1378;AC=4;AF=0.5;AN=8;AO=13;CIGAR=1X2M1X;DP=53;DPB=53;DPRA=0;EPP=31.2394;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.692308;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=520;QR=1597;RO=40;RPL=13;RPP=31.2394;RPPR=89.8692;RPR=0;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:28:21,7:21:841:7:282:-17.3243,0,-67.575 0|1:8:7,1:7:278:1:41:-1.68633,0,-22.982 0|0:13:12,1:12:478:1:39:0,-0.0168255,-39.4739 1|1:4:0,4:0:0:4:158:-14.6003,-1.20412,0 dDocent_Contig_13389 19 . G A 672.309 . AB=0.48;ABP=3.18402;AC=3;AF=0.375;AN=8;AO=24;CIGAR=1X;DP=74;DPB=74;DPRA=0.694444;EPP=55.1256;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=962;QR=1980;RO=50;RPL=0;RPP=55.1256;RPPR=111.584;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:24:24,0:24:963:0:0:0,-7.22472,-86.9686 0/1:12:7,5:7:263:5:200:-14.7661,0,-20.4114 0/1:24:13,11:13:519:11:438:-32.5484,0,-39.8316 0/1:14:6,8:6:235:8:324:-25.3144,0,-17.3048 dDocent_Contig_13391 34 . C T 810.905 . AB=0.244444;ABP=28.5372;AC=4;AF=0.5;AN=8;AO=24;CIGAR=1X2M1X;DP=58;DPB=58;DPRA=0;EPP=55.1256;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=955;QR=897;RO=23;RPL=0;RPP=55.1256;RPPR=52.9542;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:14:11,3,0:11:435:3,0:120,0:-6.97348,0,-35.2899,-10.2848,-36.193,-46.0792 0|1:9:5,2,2:5:186:2,2:81,81:-5.17401,0,-14.5924,0,-8.50592,-14.5924 0|0:22:7,6,9:7:276:6,9:240,361:-27.637,-9.97419,-30.8725,0,-2.93133,-19.9952 1|1:13:0,13,0:0:0:13,0:514,0:-46.6069,-3.91339,0,-46.6069,-3.91339,-46.6069 dDocent_Contig_13392 11 . C T 107.945 . AB=0.5;ABP=3.0103;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=44;DPB=44;DPRA=0.666667;EPP=11.6962;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.925;PAO=0;PQA=0;PQR=0;PRO=0;QA=158;QR=1558;RO=40;RPL=0;RPP=11.6962;RPPR=89.8692;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:8:4,4:4:157:4:158:-12.1924,0,-12.0982 0/0:9:9,0:9:339:0:0:0,-2.70927,-30.8524 0/0:17:17,0:17:667:0:0:0,-5.11751,-60.359 0/0:10:10,0:10:395:0:0:0,-3.0103,-35.9051 dDocent_Contig_13393 75 . G A 194.508 . AB=0.470588;ABP=3.13803;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=78;DPB=78;DPRA=0.836066;EPP=20.3821;EPPR=155.013;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=0.75;PAIREDR=0.514286;PAO=0;PQA=0;PQR=0;PRO=0;QA=288;QR=2482;RO=70;RPL=8;RPP=20.3821;RPPR=155.013;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=70;SRP=155.013;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:29:29,0:29:1022:0:0:0,-8.72987,-92.2925 0/1:17:9,8:9:318:8:288:-21.1498,0,-23.8431 0/0:20:20,0:20:717:0:0:0,-6.0206,-64.8579 0/0:12:12,0:12:425:0:0:0,-3.61236,-38.5875 dDocent_Contig_13394 46 . T A 45.6356 . AB=0.4;ABP=3.44459;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=34;DPB=34;DPRA=0.344828;EPP=7.35324;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.6875;PAO=0;PQA=0;PQR=0;PRO=0;QA=80;QR=1294;RO=32;RPL=0;RPP=7.35324;RPPR=72.4974;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:5:3,2:3:121:2:80:-6.08642,0,-9.77505 0/0:20:20,0:20:805:0:0:0,-6.0206,-72.7667 0/0:9:9,0:9:368:0:0:0,-2.70927,-33.4854 ./.:.:.:.:.:.:.:. dDocent_Contig_13395 53 . C A 1062.07 . AB=0.521127;ABP=3.28556;AC=3;AF=0.375;AN=8;AO=37;CIGAR=1X;DP=81;DPB=81;DPRA=2.36667;EPP=83.3548;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.72973;PAIREDR=0.659091;PAO=0;PQA=0;PQR=0;PRO=0;QA=1466;QR=1756;RO=44;RPL=37;RPP=83.3548;RPPR=98.5551;RPR=0;RUN=1;SAF=37;SAP=83.3548;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:10:10,0:10:410:0:0:0,-3.0103,-37.2606 0/1:23:12,11:12:483:11:438:-32.8512,0,-36.8975 0/1:17:8,9:8:303:9:346:-26.3762,0,-22.5063 0/1:31:14,17:14:560:17:682:-52.3775,0,-41.4078 dDocent_Contig_13397 15 . A T 257.738 . AB=0.277778;ABP=26.1727;AC=3;AF=0.375;AN=8;AO=15;CIGAR=1X;DP=66;DPB=66;DPRA=1.5;EPP=14.7363;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.666667;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=506;QR=1926;RO=51;RPL=0;RPP=35.5824;RPPR=113.755;RPR=15;RUN=1;SAF=12;SAP=14.7363;SAR=3;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:16,2:16:607:2:69:-1.13412,0,-49.5387 0/1:15:6,9:6:228:9:298:-22.6265,0,-16.3677 0/1:21:17,4:17:636:4:139:-6.53069,0,-51.2469 0/0:12:12,0:12:455:0:0:0,-3.61236,-41.2914 dDocent_Contig_13398 31 . A T 419.829 . AB=0.4;ABP=6.48466;AC=3;AF=0.375;AN=8;AO=16;CIGAR=1X;DP=41;DPB=41;DPRA=13.3333;EPP=37.7539;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=643;QR=1001;RO=25;RPL=0;RPP=37.7539;RPPR=57.2971;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:7,7:7:280:7:284:-21.7194,0,-21.3568 0/1:18:16,2:16:640:2:81:-2.26719,0,-52.516 0/1:8:1,7:1:41:7:278:-22.981,0,-1.68633 0/0:1:1,0:1:40:0:0:0,-0.30103,-3.99568 dDocent_Contig_13399 29 . C T 559.006 . AB=0.289157;ABP=35.0591;AC=4;AF=0.5;AN=8;AO=24;CIGAR=1X;DP=83;DPB=83;DPRA=0;EPP=55.1256;EPPR=131.127;GTI=0;LEN=1;MEANALT=1;MQM=57.375;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.0416667;PAIREDR=0.966102;PAO=0;PQA=0;PQR=0;PRO=0;QA=966;QR=2362;RO=59;RPL=0;RPP=55.1256;RPPR=131.127;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=59;SRP=131.127;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:28,8:28:1142:8:326:-18.8726,0,-92.2188 0/1:12:7,5:7:279:5:202:-14.8826,0,-21.8679 0/1:18:10,8:10:382:8:322:-23.8445,0,-29.3071 0/1:17:14,3:14:559:3:116:-5.69877,0,-45.532 dDocent_Contig_13400 143 . T C 375.37 . AB=0.215054;ABP=68.5981;AC=1;AF=0.125;AN=8;AO=20;CIGAR=1X;DP=259;DPB=259;DPRA=1.68072;EPP=46.4397;EPPR=519.821;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=59.9916;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=738;QR=9229;RO=238;RPL=0;RPP=46.4397;RPPR=519.821;RPR=20;RUN=1;SAF=0;SAP=46.4397;SAR=20;SRF=0;SRP=519.821;SRR=238;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:93:72,20:72:2780:20:738:-38.935,0,-222.541 0/0:115:115,0:115:4483:0:0:0,-34.6184,-403.442 0/0:35:35,0:35:1332:0:0:0,-10.536,-120.131 0/0:16:16,0:16:634:0:0:0,-4.81648,-57.3932 dDocent_Contig_13401 8 . C T 123.75 . AB=0.17;ABP=97.5996;AC=2;AF=0.25;AN=8;AO=19;CIGAR=1X;DP=131;DPB=131;DPRA=4.51852;EPP=44.2683;EPPR=246.215;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.894737;PAIREDR=0.982143;PAO=0;PQA=0;PQR=0;PRO=0;QA=565;QR=3943;RO=112;RPL=0;RPP=44.2683;RPPR=246.215;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=112;SRP=246.215;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:9:9,0:9:296:0:0:0,-2.70927,-26.9546 0/1:60:48,12:48:1671:12:329:-11.8131,0,-132.582 0/1:40:35,5:35:1286:5:174:-3.95844,0,-103.991 0/0:22:20,2:20:690:2:62:0,-0.734168,-56.5169 dDocent_Contig_13402 188 . G A 84.7774 . AB=0.25;ABP=11.6962;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=38;DPB=38;DPRA=2.18182;EPP=11.6962;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.676471;PAO=0;PQA=0;PQR=0;PRO=0;QA=159;QR=1340;RO=34;RPL=4;RPP=11.6962;RPPR=76.8404;RPR=0;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=76.8404;SRR=34;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:12,4:12:476:4:159:-9.87547,0,-38.3742 0/0:15:15,0:15:589:0:0:0,-4.51545,-53.3471 0/0:4:4,0:4:156:0:0:0,-1.20412,-14.4167 0/0:3:3,0:3:119:0:0:0,-0.90309,-11.095 dDocent_Contig_13403 36 . G A 77.9829 . AB=0.16129;ABP=33.9012;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=54;DPB=54;DPRA=2.69565;EPP=13.8677;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=203;QR=1939;RO=49;RPL=0;RPP=13.8677;RPPR=109.412;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:26,5:26:1030:5:203:-9.32113,0,-83.657 0/0:18:18,0:18:723:0:0:0,-5.41854,-65.3954 ./.:.:.:.:.:.:.:. 0/0:5:5,0:5:186:0:0:0,-1.50515,-17.0982 dDocent_Contig_13404 1 . N G 77.8076 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:82:-7.77968,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_13405 24 . T A 611.818 . AB=0.0860215;ABP=141.448;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1M1X1M;DP=210;DPB=482.333;DPRA=0;EPP=20.3821;EPPR=348.274;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=318;QR=6322;RO=159;RPL=0;RPP=20.3821;RPPR=348.274;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=159;SRP=348.274;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:94:81,12,0:81:3223:12,0:413,0:-9.18438,0,-261.837,-33.5678,-265.449,-298.979 0|0:76:52,17,5:52:2057:17,5:564,200:-29.9264,0,-164.171,-29.091,-152.813,-196.908 0|1:17:13,1,3:13:524:1,3:34,118:-5.83257,-7.00123,-49.8997,0,-40.4964,-42.3468 0|0:23:13,10,0:13:518:10,0:336,0:-23.6364,0,-40.0414,-27.5498,-43.0517,-70.2386 dDocent_Contig_13406 9 . T C 137.406 . AB=0.324675;ABP=23.5688;AC=4;AF=0.5;AN=8;AO=25;CIGAR=1X;DP=77;DPB=77;DPRA=0;EPP=57.2971;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=19.16;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.692308;PAO=0;PQA=0;PQR=0;PRO=0;QA=907;QR=1917;RO=52;RPL=0;RPP=57.2971;RPPR=115.927;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:11,8:11:409:8:308:-7.65581,0,-31.4347 0/1:13:7,6:7:253:6:229:-8.12332,0,-19.1985 0/1:19:16,3:16:593:3:116:-0.414521,0,-47.9851 0/1:26:18,8:18:662:8:254:-3.3518,0,-52.0795 dDocent_Contig_13409 10 . T C 440.675 . AB=0.216981;ABP=76.7584;AC=3;AF=0.375;AN=8;AO=25;CIGAR=1X2M1X;DP=136;DPB=136;DPRA=0;EPP=57.2971;EPPR=228.843;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.64;PAIREDR=0.75;PAO=0;PQA=0;PQR=0;PRO=0;QA=958;QR=3531;RO=104;RPL=0;RPP=57.2971;RPPR=228.843;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=104;SRP=228.843;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:27:19,6,1:19:649:6,1:231,11:-13.3487,0,-50.9379,-18.4138,-52.0663,-70.7419 0|1:48:33,13,1:33:1060:13,1:501,11:-31.4445,0,-81.7087,-40.7065,-84.9389,-125.797 0|0:30:26,2,2:26:911:2,2:76,22:0,-1.45903,-75.1999,-6.58371,-74.4412,-80.0741 0|1:31:26,4,1:26:911:4,1:150,11:-4.67198,0,-73.1463,-11.8627,-73.6703,-85.6595 dDocent_Contig_13410 57 . A C 1104.46 . AB=0.661017;ABP=16.2968;AC=2;AF=0.25;AN=8;AO=39;CIGAR=1X;DP=91;DPB=91;DPRA=1.84375;EPP=87.6977;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1455;QR=1987;RO=52;RPL=39;RPP=87.6977;RPPR=115.927;RPR=0;RUN=1;SAF=39;SAP=87.6977;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:26:26,0:26:1002:0:0:0,-7.82678,-90.4913 0/1:47:12,35:12:463:35:1302:-103.315,0,-27.8729 0/0:6:6,0:6:214:0:0:0,-1.80618,-19.6049 0/1:12:8,4:8:308:4:153:-10.529,0,-24.4688 dDocent_Contig_13411 15 . G A 160.262 . AB=0.5;ABP=3.0103;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=51;DPB=51;DPRA=1.04;EPP=18.2106;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=0.954545;PAO=0;PQA=0;PQR=0;PRO=0;QA=274;QR=1719;RO=44;RPL=0;RPP=18.2106;RPPR=98.5551;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:12:12,0:12:455:0:0:0,-3.61236,-41.2874 0/1:12:6,6:6:228:6:233:-17.7243,0,-17.2683 0/0:13:13,0:13:527:0:0:0,-3.91339,-47.7768 0/0:14:13,1:13:509:1:41:0,-0.119853,-42.0583 dDocent_Contig_13413 31 . C G 980.211 . AB=0.545455;ABP=3.99733;AC=5;AF=0.625;AN=8;AO=33;CIGAR=1X;DP=58;DPB=58;DPRA=0;EPP=74.6689;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1317;QR=1002;RO=25;RPL=0;RPP=74.6689;RPPR=57.2971;RPR=33;RUN=1;SAF=33;SAP=74.6689;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:116:-10.8163,-0.90309,0 0/1:12:4,8:4:163:8:320:-25.553,0,-11.4461 0/1:18:15,3:15:596:3:119:-5.67647,0,-48.5589 0/1:25:6,19:6:243:19:762:-61.3731,0,-14.7224 dDocent_Contig_13414 10 . G C 83.3243 . AB=0.178571;ABP=28.1373;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X2M1X2M1X;DP=46;DPB=46;DPRA=4.66667;EPP=13.8677;EPPR=87.6977;GTI=0;LEN=1;MEANALT=2;MQM=58.6;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.794872;PAO=0;PQA=0;PQR=0;PRO=0;QA=202;QR=1517;RO=39;RPL=0;RPP=13.8677;RPPR=87.6977;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:4:4,0:4:151:0:0:0,-1.20412,-13.9557 0|0:10:10,0:10:398:0:0:0,-3.0103,-36.1799 0|1:28:22,5:22:857:5:202:-10.0312,0,-68.9369 0|0:4:3,0:3:111:0:0:0,-0.90309,-9.9833 dDocent_Contig_13415 16 . A C 611.39 . AB=0.105263;ABP=28.7251;AC=0;AF=0;AN=6;AO=2;CIGAR=1X1M7D1X2M1X2M1X;DP=41;DPB=40.125;DPRA=1.9;EPP=7.35324;EPPR=42.0968;GTI=0;LEN=1;MEANALT=2;MQM=15;MQMR=60;NS=3;NUMALT=2;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=79;QR=708;RO=18;RPL=0;RPP=7.35324;RPPR=42.0968;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:10:0,0,10:0:0:0,10:0,391:-35.5459,-35.5459,-35.5459,-3.0103,-3.0103,0 .:.:.:.:.:.:.:. 0|0:19:9,2,8:9:351:2,8:79,314:-23.309,-23.9714,-52.2185,0,-26.995,-26.6384 0|0:12:9,0,3:9:357:0,3:0,101:-5.807,-8.51627,-37.9493,0,-29.7844,-28.8813 dDocent_Contig_13416 144 . A G 114.489 . AB=0.352941;ABP=6.20364;AC=2;AF=0.25;AN=8;AO=6;CIGAR=1X;DP=32;DPB=32;DPRA=1.13333;EPP=16.0391;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=214;QR=921;RO=26;RPL=0;RPP=16.0391;RPPR=59.4686;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=59.4686;SRR=26;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:8:5,3:5:176:3:108:-7.66693,0,-13.7763 0/0:4:4,0:4:147:0:0:0,-1.20412,-13.5899 0/0:11:11,0:11:381:0:0:0,-3.31133,-34.6218 0/1:9:6,3:6:217:3:106:-7.17983,0,-17.1723 dDocent_Contig_13417 9 . G A 79.0609 . AB=0.294118;ABP=9.26925;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=27;DPB=27;DPRA=0.85;EPP=13.8677;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=176;QR=744;RO=22;RPL=0;RPP=13.8677;RPPR=50.7827;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:10:10,0:10:311:0:0:0,-3.0103,-28.2827 ./.:.:.:.:.:.:.:. 0/1:12:10,2:10:357:2:73:-3.31834,0,-28.8509 0/1:5:2,3:2:76:3:103:-8.10369,0,-5.70952 dDocent_Contig_13418 12 . C T 48.7402 . AB=0.666667;ABP=3.73412;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=22;DPB=22;DPRA=0.315789;EPP=7.35324;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=80;QR=799;RO=20;RPL=0;RPP=7.35324;RPPR=46.4397;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:11,0:11:440:0:0:0,-3.31133,-39.9557 0/0:8:8,0:8:318:0:0:0,-2.40824,-28.9863 ./.:.:.:.:.:.:.:. 0/1:3:1,2:1:41:2:80:-6.6887,0,-3.19148 dDocent_Contig_13419 49 . G A 192.339 . AB=0.185714;ABP=63.067;AC=2;AF=0.25;AN=8;AO=13;CIGAR=1X;DP=133;DPB=133;DPRA=1.11111;EPP=31.2394;EPPR=263.587;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.925;PAO=0;PQA=0;PQR=0;PRO=0;QA=477;QR=4443;RO=120;RPL=0;RPP=31.2394;RPPR=263.587;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=120;SRP=263.587;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:35:35,0:35:1290:0:0:0,-10.536,-116.383 0/1:42:32,10:32:1200:10:363:-20.3655,0,-95.6518 0/1:28:25,3:25:930:3:114:-2.20314,0,-75.5801 0/0:28:28,0:28:1023:0:0:0,-8.42884,-92.3657 dDocent_Contig_13420 16 . A G 110.229 . AB=0.184211;ABP=35.9253;AC=2;AF=0.25;AN=8;AO=7;CIGAR=1X;DP=50;DPB=50;DPRA=3.16667;EPP=18.2106;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=278;QR=1717;RO=43;RPL=0;RPP=18.2106;RPPR=96.3836;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5,0:5:205:0:0:0,-1.50515,-18.835 0/1:8:7,1:7:280:1:41:-1.68633,0,-23.1633 0/1:30:24,6:24:961:6:237:-12.6721,0,-77.76 0/0:7:7,0:7:271:0:0:0,-2.10721,-24.7516 dDocent_Contig_13421 24 . T A 80.8531 . AB=0.25;ABP=11.6962;AC=1;AF=0.125;AN=8;AO=4;CIGAR=2X;DP=46;DPB=46;DPRA=1.6;EPP=11.6962;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=0.857143;PAO=0;PQA=0;PQR=0;PRO=0;QA=158;QR=1647;RO=42;RPL=0;RPP=11.6962;RPPR=94.2121;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:11:11,0:11:427:0:0:0,-3.31133,-38.7815 0|0:2:2,0:2:82:0:0:0,-0.60206,-7.77968 0|0:17:17,0:17:661:0:0:0,-5.11751,-59.8199 0|1:16:12,4:12:477:4:158:-9.784,0,-38.4643 dDocent_Contig_13422 97 . G A 163.812 . AB=0.538462;ABP=3.17734;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=45;DPB=45;DPRA=0.8125;EPP=18.2106;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=242;QR=1236;RO=38;RPL=7;RPP=18.2106;RPPR=85.5263;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 0/0:31:31,0:31:997:0:0:0,-9.33193,-90.0239 0/1:13:6,7:6:204:7:242:-18.2043,0,-14.7805 0/0:1:1,0:1:35:0:0:0,-0.30103,-3.49863 dDocent_Contig_13424 14 . G C 135.608 . AB=0.181818;ABP=41.702;AC=2;AF=0.25;AN=8;AO=8;CIGAR=1X;DP=103;DPB=103;DPRA=0.745763;EPP=20.3821;EPPR=209.3;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=326;QR=3773;RO=95;RPL=0;RPP=20.3821;RPPR=209.3;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=95;SRP=209.3;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:46:46,0:46:1792:0:0:0,-13.8474,-161.489 0/1:25:19,6:19:770:6:244:-14.8131,0,-62.0946 0/0:13:13,0:13:527:0:0:0,-3.91339,-47.7766 0/1:19:17,2:17:684:2:82:-2.06011,0,-56.17 dDocent_Contig_13425 16 . A G 568.325 . AB=0.416667;ABP=5.18177;AC=6;AF=0.75;AN=8;AO=20;CIGAR=1X;DP=41;DPB=41;DPRA=0;EPP=46.4397;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=773;QR=814;RO=21;RPL=0;RPP=46.4397;RPPR=48.6112;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:80:-7.59157,-0.60206,0 1/1:3:0,3:0:0:3:119:-11.0952,-0.90309,0 0/1:18:12,6:12:471:6:230:-15.6471,0,-37.3229 0/1:18:9,9:9:343:9:344:-25.8961,0,-25.8016 dDocent_Contig_13427 7 . G T 269 . AB=0.154412;ABP=144.092;AC=3;AF=0.375;AN=8;AO=25;CIGAR=1X;DP=205;DPB=205;DPRA=0;EPP=57.2971;EPPR=391.704;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.98324;PAO=0;PQA=0;PQR=0;PRO=0;QA=928;QR=5685;RO=179;RPL=0;RPP=57.2971;RPPR=391.704;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=179;SRP=391.704;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:69:65,4:65:2097:4:128:0,-8.94061,-177.118 0/1:51:44,7:44:1427:7:260:-8.40226,0,-113.337 0/1:54:46,8:46:1458:8:306:-11.6454,0,-115.222 0/1:31:24,6:24:703:6:234:-12.2503,0,-54.3859 dDocent_Contig_13430 13 . C A 192.308 . AB=0.22;ABP=37.059;AC=3;AF=0.375;AN=8;AO=11;CIGAR=1X;DP=57;DPB=57;DPRA=2.38095;EPP=26.8965;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.956522;PAO=0;PQA=0;PQR=0;PRO=0;QA=424;QR=1830;RO=46;RPL=0;RPP=26.8965;RPPR=102.898;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:8,3:8:320:3:119:-7.78317,0,-25.855 0/0:7:7,0:7:282:0:0:0,-2.10721,-25.7526 0/1:22:16,6:16:633:6:234:-14.8021,0,-50.6807 0/1:17:15,2:15:595:2:71:-1.62455,0,-48.7679 dDocent_Contig_13432 7 . G A 699.846 . AB=0.405797;ABP=8.32883;AC=4;AF=0.5;AN=8;AO=28;CIGAR=1X;DP=69;DPB=69;DPRA=0;EPP=63.8115;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1.5;MQM=55.2143;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.678571;PAIREDR=0.589744;PAO=0;PQA=0;PQR=0;PRO=0;QA=1087;QR=1188;RO=39;RPL=0;RPP=63.8115;RPPR=87.6977;RPR=28;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:14,4:14:408:4:156:-8.49074,0,-31.3782 0/1:11:2,9:2:50:9:348:-28.369,0,-1.43762 0/1:23:15,7:15:530:7:271:-16.3033,0,-41.272 0/1:16:8,8:8:200:8:312:-23.6284,0,-13.4257 dDocent_Contig_13433 28 . T C 873.669 . AB=0.402439;ABP=9.78953;AC=4;AF=0.5;AN=8;AO=33;CIGAR=1X;DP=82;DPB=82;DPRA=0;EPP=74.6689;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=0.515152;PAIREDR=0.693878;PAO=0;PQA=0;PQR=0;PRO=0;QA=1311;QR=1960;RO=49;RPL=0;RPP=74.6689;RPPR=109.412;RPR=33;RUN=1;SAF=33;SAP=74.6689;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:10,3:10:400:3:121:-7.3666,0,-32.4456 0/1:26:16,10:16:653:10:404:-28.8922,0,-51.2756 0/1:23:13,10:13:513:10:394:-28.8913,0,-39.5884 0/1:20:10,10:10:394:10:392:-29.6148,0,-29.7938 dDocent_Contig_13434 65 . A C 59.5105 . AB=0.192308;ABP=24.391;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=54;DPB=54;DPRA=2.78571;EPP=13.8677;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=165;QR=1558;RO=49;RPL=5;RPP=13.8677;RPPR=109.412;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:21,5:21:660:5:165:-7.34879,0,-51.8701 0/0:21:21,0:21:657:0:0:0,-6.32163,-59.4278 0/0:3:3,0:3:103:0:0:0,-0.90309,-9.60997 0/0:4:4,0:4:138:0:0:0,-1.20412,-12.7604 dDocent_Contig_13435 84 . C T 113.398 . AB=0.230769;ABP=27.5646;AC=4;AF=0.5;AN=8;AO=9;CIGAR=1X;DP=39;DPB=39;DPRA=0;EPP=22.5536;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=322;QR=1037;RO=30;RPL=9;RPP=22.5536;RPPR=68.1545;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:6,3:6:209:3:107:-7.2729,0,-16.4418 0/1:7:5,2:5:166:2:71:-4.63485,0,-13.1596 0/1:18:15,3:15:523:3:108:-4.65663,0,-41.982 0/1:5:4,1:4:139:1:36:-2.09312,0,-11.3475 dDocent_Contig_13438 11 . A G 289.796 . AB=0.714286;ABP=8.59409;AC=2;AF=0.25;AN=8;AO=13;CIGAR=1X3M1X;DP=63;DPB=63;DPRA=0;EPP=31.2394;EPPR=102.898;GTI=0;LEN=1;MEANALT=1.75;MQM=59.7692;MQMR=60;NS=4;NUMALT=2;ODDS=3.46945e-18;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=506;QR=1670;RO=46;RPL=0;RPP=31.2394;RPPR=102.898;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:26:22,2,2:22:805:2,2:78,49:0,-0.138507,-65.4239,-2.88958,-62.2305,-68.0422 0|0:23:21,1,1:21:750:1,1:39,11:0,-2.97592,-64.0471,-5.77249,-63.6704,-66.5767 0|1:9:1,8,0:1:38:8,0:311,0:-25.6419,0,-1.088,-25.943,-3.49624,-29.0585 0|1:5:2,2,0:2:77:2,0:78,0:-5.8097,0,-5.71702,-6.41176,-6.31908,-12.7322 dDocent_Contig_13439 25 . G A 33.0665 . AB=0.285714;ABP=11.386;AC=3;AF=0.375;AN=8;AO=6;CIGAR=1X;DP=29;DPB=29;DPRA=0.875;EPP=16.0391;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=24;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=246;QR=928;RO=23;RPL=0;RPP=16.0391;RPPR=52.9542;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:11,2:11:448:2:82:-0.630372,0,-36.7626 0/1:3:1,2:1:40:2:82:-3.64067,0,-3.09259 0/1:5:3,2:3:123:2:82:-3.03861,0,-9.95964 0/0:8:8,0:8:317:0:0:0,-2.40824,-28.8938 dDocent_Contig_13441 31 . C A 127.981 . AB=0.285714;ABP=11.386;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=59;DPB=59;DPRA=1.65789;EPP=16.0391;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.833333;PAIREDR=0.622642;PAO=0;PQA=0;PQR=0;PRO=0;QA=224;QR=2127;RO=53;RPL=0;RPP=16.0391;RPPR=118.098;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:15,6:15:596:6:224:-14.196,0,-47.6562 0/0:20:20,0:20:802:0:0:0,-6.0206,-72.4976 0/0:10:10,0:10:404:0:0:0,-3.0103,-36.7196 0/0:8:8,0:8:325:0:0:0,-2.40824,-29.6196 dDocent_Contig_13443 21 . A G 63.8654 . AB=0.3;ABP=6.48466;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=87;DPB=87;DPRA=1.175;EPP=16.0391;EPPR=178.9;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.333333;PAIREDR=0.567901;PAO=0;PQA=0;PQR=0;PRO=0;QA=237;QR=3216;RO=81;RPL=0;RPP=16.0391;RPPR=178.9;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=81;SRP=178.9;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:37:34,3:34:1357:3:118:0,-0.136528,-111.383 0/0:22:22,0:22:854:0:0:0,-6.62266,-77.1614 0/0:18:18,0:18:720:0:0:0,-5.41854,-65.1249 0/1:10:7,3:7:285:3:119:-8.08471,0,-23.0141 dDocent_Contig_13444 160 . A T 383.131 . AB=0.55;ABP=3.87889;AC=3;AF=0.375;AN=8;AO=23;CIGAR=1X2M1X3M1X;DP=65;DPB=65;DPRA=0;EPP=52.9542;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1.25;MQM=28.3478;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=851;QR=1523;RO=41;RPL=11;RPP=3.10471;RPPR=92.0407;RPR=12;RUN=1;SAF=11;SAP=3.10471;SAR=12;SRF=0;SRP=92.0407;SRR=41;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:13:7,6:7:256:6:216:-11.1016,0,-19.4725 0|0:25:24,1:24:909:1:37:0,-5.05224,-79.6498 0|1:13:5,8:5:186:8:289:-16.2827,0,-13.187 0|1:14:5,8:5:172:8:309:-16.3268,0,-11.642 dDocent_Contig_13445 7 . G T 38.0351 . AB=0.25;ABP=7.35324;AC=1;AF=0.125;AN=8;AO=2;CIGAR=2X3M2X;DP=42;DPB=42;DPRA=0.705882;EPP=7.35324;EPPR=79.0118;GTI=0;LEN=1;MEANALT=3;MQM=57;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=78;QR=1239;RO=35;RPL=0;RPP=7.35324;RPPR=79.0118;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:8:4,2:4:148:2:78:-5.20138,0,-11.4914 0|0:10:10,0:10:359:0:0:0,-3.0103,-32.645 0|0:14:12,0:12:413:0:0:0,-3.61236,-37.176 0|0:10:9,0:9:319:0:0:0,-2.70927,-28.6885 dDocent_Contig_13446 15 . C T 532.132 . AB=0.271605;ABP=39.7109;AC=2;AF=0.25;AN=8;AO=25;CIGAR=1X;DP=135;DPB=135;DPRA=0;EPP=57.2971;EPPR=241.872;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.92;PAIREDR=0.918182;PAO=0;PQA=0;PQR=0;PRO=0;QA=1010;QR=4395;RO=110;RPL=0;RPP=57.2971;RPPR=241.872;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=110;SRP=241.872;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:50:33,17:33:1329:17:688:-47.1982,0,-104.821 0/1:31:26,5:26:1028:5:204:-9.4121,0,-83.4789 0/0:29:28,1:28:1123:1:40:0,-4.73419,-97.3555 0/0:25:23,2:23:915:2:78:0,-0.122973,-75.2515 dDocent_Contig_13448 7 . G A 112.422 . AB=0.175;ABP=39.7082;AC=2;AF=0.25;AN=8;AO=7;CIGAR=1X;DP=80;DPB=80;DPRA=1;EPP=18.2106;EPPR=157.185;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.8169;NS=4;NUMALT=1;ODDS=0;PAIRED=0.428571;PAIREDR=0.577465;PAO=0;PQA=0;PQR=0;PRO=0;QA=269;QR=2249;RO=71;RPL=0;RPP=18.2106;RPPR=157.185;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=71;SRP=157.185;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:22,6:22:651:6:230:-12.638,0,-50.3896 0/1:12:11,1:11:370:1:39:-0.284205,0,-30.0076 0/0:29:28,0:28:943:0:0:0,-8.42884,-85.0394 0/0:11:10,0:10:285:0:0:0,-3.0103,-25.7982 dDocent_Contig_13449 76 . C G 54.7429 . AB=0.25;ABP=9.52472;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=27;DPB=27;DPRA=1.6;EPP=9.52472;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=117;QR=910;RO=24;RPL=3;RPP=9.52472;RPPR=55.1256;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:3:3,0:3:117:0:0:0,-0.90309,-10.9104 0/0:12:12,0:12:466:0:0:0,-3.61236,-42.2916 0/1:12:9,3:9:327:3:117:-7.29802,0,-26.1584 ./.:.:.:.:.:.:.:. dDocent_Contig_13450 34 . G A 72.8833 . AB=0.428571;ABP=3.32051;AC=1;AF=0.125;AN=8;AO=3;CIGAR=2X;DP=51;DPB=51;DPRA=0.477273;EPP=9.52472;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.916667;PAO=0;PQA=0;PQR=0;PRO=0;QA=119;QR=1911;RO=48;RPL=0;RPP=9.52472;RPPR=107.241;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:7:7,0:7:282:0:0:0,-2.10721,-25.753 0|1:7:4,3:4:153:3:119:-8.98729,0,-12.0325 0|0:21:21,0:21:834:0:0:0,-6.32163,-75.3763 0|0:16:16,0:16:642:0:0:0,-4.81648,-58.1158 dDocent_Contig_13451 48 . A T 185.282 . AB=0.857143;ABP=10.7656;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X2M1X;DP=70;DPB=70;DPRA=0.222222;EPP=16.0391;EPPR=141.985;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=243;QR=2459;RO=64;RPL=6;RPP=16.0391;RPPR=141.985;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=64;SRP=141.985;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:43:43,0:43:1674:0:0:0,-12.9443,-150.902 0|0:20:20,0:20:745:0:0:0,-6.0206,-67.3573 0|1:7:1,6:1:40:6:243:-20.141,0,-1.88847 .:.:.:.:.:.:.:. dDocent_Contig_13452 22 . A G 283.256 . AB=0.714286;ABP=8.59409;AC=2;AF=0.25;AN=8;AO=10;CIGAR=1X;DP=42;DPB=42;DPRA=0.5;EPP=24.725;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=391;QR=1291;RO=32;RPL=0;RPP=24.725;RPPR=72.4974;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:11,0:11:443:0:0:0,-3.31133,-40.2253 0/1:9:2,7:2:79:7:273:-22.2263,0,-4.78797 0/1:5:2,3:2:82:3:118:-9.49705,0,-6.27453 0/0:17:17,0:17:687:0:0:0,-5.11751,-62.1592 dDocent_Contig_13453 45 . G A 1526.78 . AB=0.495413;ABP=3.03022;AC=4;AF=0.5;AN=8;AO=54;CIGAR=1X;DP=109;DPB=109;DPRA=0;EPP=120.27;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=0.648148;PAIREDR=0.654545;PAO=0;PQA=0;PQR=0;PRO=0;QA=2128;QR=2122;RO=55;RPL=0;RPP=120.27;RPPR=122.441;RPR=54;RUN=1;SAF=54;SAP=120.27;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:38:21,17:21:830:17:676:-49.7323,0,-63.5765 0/1:21:15,6:15:549:6:238:-15.4723,0,-43.4154 0/1:29:11,18:11:428:18:722:-56.5767,0,-30.1411 0/1:21:8,13:8:315:13:492:-38.295,0,-22.3943 dDocent_Contig_13456 96 . A G 116.855 . AB=0.555556;ABP=3.25157;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=81;DPB=81;DPRA=0.375;EPP=13.8677;EPPR=168.042;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=175;QR=2538;RO=76;RPL=5;RPP=13.8677;RPPR=168.042;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=76;SRP=168.042;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:54:54,0:54:1814:0:0:0,-16.2556,-163.541 0/0:8:8,0:8:255:0:0:0,-2.40824,-23.2625 0/0:10:10,0:10:332:0:0:0,-3.0103,-30.2023 0/1:9:4,5:4:137:5:175:-13.3844,0,-9.95894 dDocent_Contig_13457 19 . T A 783.212 . AB=0.33;ABP=28.1125;AC=4;AF=0.5;AN=8;AO=33;CIGAR=2X;DP=100;DPB=100;DPRA=0;EPP=74.6689;EPPR=148.499;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.727273;PAIREDR=0.791045;PAO=0;PQA=0;PQR=0;PRO=0;QA=1271;QR=2594;RO=67;RPL=0;RPP=74.6689;RPPR=148.499;RPR=33;RUN=1;SAF=33;SAP=74.6689;SAR=0;SRF=67;SRP=148.499;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:30:26,4:26:1017:4:164:-6.119,0,-82.8041 0|1:19:13,6:13:499:6:231:-15.4365,0,-39.5377 0|1:28:8,20:8:311:20:771:-61.2768,0,-19.9237 0|1:23:20,3:20:767:3:105:-2.8724,0,-62.4248 dDocent_Contig_13458 185 . N G 113.73 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=0;RO=0;RPL=3;RPP=9.52472;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:122:-11.3725,-0.90309,0 dDocent_Contig_13459 28 . T G 118.637 . AB=0.294118;ABP=9.26925;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=43;DPB=43;DPRA=1.96154;EPP=13.8677;EPPR=77.0689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.947368;PAO=0;PQA=0;PQR=0;PRO=0;QA=200;QR=1478;RO=38;RPL=0;RPP=13.8677;RPPR=85.5263;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=37;SRP=77.0689;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:12,5:12:468:5:200:-13.2615,0,-37.3472 0/0:12:12,0:12:478:0:0:0,-3.61236,-43.3691 0/0:11:11,0:11:425:0:0:0,-3.31133,-38.5975 0/0:3:3,0:3:107:0:0:0,-0.90309,-9.97958 dDocent_Contig_13460 21 . A G 2098.29 . AB=0.572581;ABP=8.68415;AC=4;AF=0.5;AN=8;AO=71;CIGAR=1X;DP=124;DPB=124;DPRA=0;EPP=157.185;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.971831;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2814;QR=2119;RO=53;RPL=0;RPP=157.185;RPPR=118.098;RPR=71;RUN=1;SAF=71;SAP=157.185;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:33:5,28:5:199:28:1108:-90.0732,0,-8.35436 0/1:26:8,18:8:309:18:714:-56.7585,0,-20.3431 0/1:31:24,7:24:967:7:269:-15.2385,0,-77.9969 0/1:34:16,18:16:644:18:723:-55.157,0,-48.0596 dDocent_Contig_13462 31 . T C 159.709 . AB=0;ABP=0;AC=4;AF=0.5;AN=8;AO=4;CIGAR=1X;DP=27;DPB=27;DPRA=0.173913;EPP=11.6962;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=162;QR=920;RO=23;RPL=0;RPP=11.6962;RPPR=52.9542;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:122:-11.3725,-0.90309,0 0/0:9:9,0:9:365:0:0:0,-2.70927,-33.2151 0/0:14:14,0:14:555:0:0:0,-4.21442,-50.2905 1/1:1:0,1:0:0:1:40:-3.99568,-0.30103,0 dDocent_Contig_13464 39 . A T 265.886 . AB=0.333333;ABP=10.9724;AC=2;AF=0.25;AN=8;AO=11;CIGAR=1X;DP=63;DPB=63;DPRA=1.1;EPP=26.8965;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.788462;PAO=0;PQA=0;PQR=0;PRO=0;QA=435;QR=2026;RO=52;RPL=0;RPP=26.8965;RPPR=115.927;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:8,9:8:308:9:356:-27.2837,0,-22.9635 0/0:20:20,0:20:785:0:0:0,-6.0206,-70.971 0/0:10:10,0:10:397:0:0:0,-3.0103,-36.0894 0/1:16:14,2:14:536:2:79:-2.68076,0,-43.7622 dDocent_Contig_13465 13 . T A 2170.97 . AB=0.445087;ABP=7.54152;AC=4;AF=0.5;AN=8;AO=77;CIGAR=1X;DP=173;DPB=173;DPRA=0;EPP=170.214;EPPR=211.472;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=0.74026;PAIREDR=0.875;PAO=0;PQA=0;PQR=0;PRO=0;QA=3059;QR=3825;RO=96;RPL=0;RPP=170.214;RPPR=211.472;RPR=77;RUN=1;SAF=77;SAP=170.214;SAR=0;SRF=96;SRP=211.472;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:50:25,25:25:996:25:1000:-75.2448,0,-74.8842 0/1:57:30,27:30:1207:27:1082:-80.5098,0,-91.7467 0/1:31:22,9:22:856:9:339:-21.5214,0,-68.0102 0/1:35:19,16:19:766:16:638:-47.2185,0,-58.7251 dDocent_Contig_13470 27 . A T 45.561 . AB=0.176471;ABP=18.4661;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=53;DPB=53;DPRA=1.41667;EPP=9.52472;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=2003;RO=50;RPL=0;RPP=9.52472;RPPR=111.584;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:25:25,0:25:999:0:0:0,-7.52575,-90.2052 0/1:17:14,3:14:562:3:122:-6.25498,0,-45.8039 0/0:7:7,0:7:280:0:0:0,-2.10721,-25.5707 0/0:4:4,0:4:162:0:0:0,-1.20412,-14.967 dDocent_Contig_13471 23 . C T 1224.88 . AB=0.594203;ABP=8.32883;AC=4;AF=0.5;AN=8;AO=41;CIGAR=1X;DP=69;DPB=69;DPRA=0;EPP=92.0407;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1658;QR=1118;RO=28;RPL=0;RPP=92.0407;RPPR=63.8115;RPR=41;RUN=1;SAF=41;SAP=92.0407;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:5,18:5:203:18:719:-58.1081,0,-11.7294 0/1:22:16,6:16:636:6:245:-15.8068,0,-50.9467 0/1:11:2,9:2:78:9:367:-30.0839,0,-4.09197 0/1:13:5,8:5:201:8:327:-25.8867,0,-14.5571 dDocent_Contig_13472 13 . C A 837.634 . AB=0.336735;ABP=25.7;AC=3;AF=0.5;AN=6;AO=33;CIGAR=1X;DP=98;DPB=98;DPRA=0;EPP=74.6689;EPPR=144.156;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1308;QR=2574;RO=65;RPL=0;RPP=74.6689;RPPR=144.156;RPR=33;RUN=1;SAF=33;SAP=74.6689;SAR=0;SRF=65;SRP=144.156;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:60:36,24:36:1444:24:946:-67.3787,0,-112.147 0/1:33:27,6:27:1053:6:241:-12.1327,0,-85.1284 0/1:5:2,3:2:77:3:121:-9.77484,0,-5.80368 ./.:.:.:.:.:.:.:. dDocent_Contig_13474 98 . N A 97.0363 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=104;QR=0;RO=0;RPL=3;RPP=9.52472;RPPR=0;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:104:-9.70309,-0.90309,0 ./.:.:.:.:.:.:.:. dDocent_Contig_13477 24 . A G 480.115 . AB=0.290323;ABP=14.8483;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X2M1X3M;DP=58;DPB=58;DPRA=0;EPP=22.5536;EPPR=65.983;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=0.444444;PAIREDR=0.862069;PAO=0;PQA=0;PQR=0;PRO=0;QA=358;QR=1141;RO=29;RPL=0;RPP=22.5536;RPPR=65.983;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:23:7,7,9,0:7:272:7,9,0:276,363,0:-28.1816,-7.58576,-27.8232,-0.361637,0,-20.0006,-30.2888,-29.9304,-22.7098,-52.6366 0|0:8:3,2,3,0:3:114:2,3,0:82,121,0:-9.0672,-3.19949,-11.934,0,-2.55021,-8.42719,-9.97029,-12.536,-9.33028,-19.3088 0|0:13:8,0,5,0:8:318:0,5,0:0,202,0:-14.6487,-17.0569,-43.2345,0,-26.5786,-25.0734,-17.0569,-43.2345,-26.5786,-43.2345 0|0:14:11,0,1,2:11:437:0,1,2:0,40,82:-3.46342,-6.77475,-42.7455,-3.48297,-39.4504,-39.1494,0,-35.9756,-32.6803,-35.3735 dDocent_Contig_13478 81 . C T 68.0014 . AB=0.6;ABP=3.44459;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=29;DPB=29;DPRA=0.625;EPP=9.52472;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=104;QR=879;RO=26;RPL=3;RPP=9.52472;RPPR=59.4686;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:5:2,3:2:69:3:104:-8.19794,0,-5.04751 0/0:9:9,0:9:302:0:0:0,-2.70927,-27.5069 0/0:5:5,0:5:169:0:0:0,-1.50515,-15.5431 0/0:10:10,0:10:339:0:0:0,-3.0103,-30.8391 dDocent_Contig_13479 155 . A T 79.4534 . AB=0.294118;ABP=9.26925;AC=2;AF=0.25;AN=8;AO=5;CIGAR=1X;DP=26;DPB=26;DPRA=1.88889;EPP=13.8677;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=175;QR=850;RO=21;RPL=0;RPP=13.8677;RPPR=48.6112;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=48.6112;SRR=21;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:6:6,0:6:245:0:0:0,-1.80618,-22.4295 0/1:15:11,4:11:447:4:138:-8.23446,0,-36.0701 0/1:2:1,1:1:40:1:37:-3.09577,0,-3.39362 0/0:3:3,0:3:118:0:0:0,-0.90309,-11.0025 dDocent_Contig_13483 25 . C A 650.919 . AB=0.44;ABP=4.57376;AC=4;AF=0.5;AN=8;AO=23;CIGAR=1X;DP=54;DPB=54;DPRA=5.66667;EPP=52.9542;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=916;QR=1218;RO=31;RPL=0;RPP=52.9542;RPPR=70.3259;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:20,9:20:788:9:351:-23.2179,0,-62.5102 0/1:21:8,13:8:312:13:525:-41.2756,0,-22.1217 1/1:1:0,1:0:0:1:40:-3.99568,-0.30103,0 0/0:3:3,0:3:118:0:0:0,-0.90309,-11.0025 dDocent_Contig_13487 86 . G A 862.422 . AB=0.68;ABP=17.0814;AC=1;AF=0.125;AN=8;AO=34;CIGAR=1X;DP=107;DPB=107;DPRA=2.63158;EPP=76.8404;EPPR=161.528;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1141;QR=2342;RO=73;RPL=34;RPP=76.8404;RPPR=161.528;RPR=0;RUN=1;SAF=34;SAP=76.8404;SAR=0;SRF=73;SRP=161.528;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:15:15,0:15:498:0:0:0,-4.51545,-45.1391 0/1:50:16,34:16:522:34:1141:-87.9412,0,-32.242 0/0:32:32,0:32:1029:0:0:0,-9.63296,-92.907 0/0:10:10,0:10:293:0:0:0,-3.0103,-26.6568 dDocent_Contig_13488 107 . N C 130.425 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=46;MQMR=0;NS=1;NUMALT=1;ODDS=7.37776;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=143;QR=0;RO=0;RPL=0;RPP=11.6962;RPPR=0;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:4:0,4:0:0:4:143:-13.0422,-1.20412,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_13489 92 . G A 504.342 . AB=0.666667;ABP=10.2485;AC=2;AF=0.25;AN=8;AO=20;CIGAR=1X;DP=55;DPB=55;DPRA=1.2;EPP=46.4397;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=691;QR=1182;RO=35;RPL=20;RPP=46.4397;RPPR=79.0118;RPR=0;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:16:16,0:16:532:0:0:0,-4.81648,-48.1948 0/0:9:9,0:9:309:0:0:0,-2.70927,-28.1433 0/1:19:8,11:8:271:11:381:-28.9041,0,-19.001 0/1:11:2,9:2:70:9:310:-24.923,0,-3.33607 dDocent_Contig_13490 23 . G A 44.2028 . AB=0.3;ABP=6.48466;AC=2;AF=0.25;AN=8;AO=4;CIGAR=1X;DP=24;DPB=24;DPRA=7.66667;EPP=11.6962;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=149;QR=789;RO=20;RPL=0;RPP=11.6962;RPPR=46.4397;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:8:6,2:6:238:2:76:-4.80643,0,-19.385 0/0:13:12,1:12:472:1:37:0,-0.215561,-39.1265 0/1:2:1,1:1:41:1:36:-2.99621,0,-3.49251 0/0:1:1,0:1:38:0:0:0,-0.30103,-3.79727 dDocent_Contig_13491 8 . A T 257.974 . AB=0.191919;ABP=84.627;AC=3;AF=0.375;AN=8;AO=19;CIGAR=1X2M1X;DP=129;DPB=129;DPRA=1.1;EPP=44.2683;EPPR=228.843;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=59.5481;NS=4;NUMALT=2;ODDS=0;PAIRED=0.736842;PAIREDR=0.990385;PAO=0;PQA=0;PQR=0;PRO=0;QA=658;QR=3712;RO=104;RPL=0;RPP=44.2683;RPPR=228.843;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=104;SRP=228.843;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:30:29,0,0:29:1038:0,0:0,0:0,-8.72987,-92.7566,-8.72987,-92.7566,-92.7566 0|1:45:35,6,4:35:1271:6,4:225,163:-7.87473,0,-101.912,-4.95056,-90.2667,-107.494 0|1:43:35,7,0:35:1225:7,0:208,0:-6.02214,0,-97.5342,-16.5582,-99.6414,-116.237 0|1:11:5,6,0:5:178:6,0:225,0:-17.2985,0,-13.0559,-18.8036,-14.8621,-33.3013 dDocent_Contig_13492 8 . A G 1120.85 . AB=0.448598;ABP=5.46589;AC=3;AF=0.375;AN=8;AO=48;CIGAR=2X;DP=108;DPB=108;DPRA=35.6667;EPP=107.241;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1583;QR=1319;RO=41;RPL=0;RPP=107.241;RPPR=92.0407;RPR=48;RUN=1;SAF=48;SAP=107.241;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:55:20,26,9:20:633:26,9:873,323:-64.6592,0,-43.0633,-44.3345,-24.5376,-92.5361 0|1:42:19,13,10:19:632:13,10:446,372:-30.4699,0,-47.1874,-5.72918,-20.6395,-53.8392 0|1:10:1,9,0:1:37:9,0:264,0:-21.0309,0,-0.687529,-21.3319,-3.3968,-24.3666 0|0:1:1,0,0:1:17:0,0:0,0:0,-0.30103,-1.69998,-0.30103,-1.69998,-1.69998 dDocent_Contig_13493 94 . T C 233.292 . AB=0.625;ABP=5.18177;AC=2;AF=0.25;AN=8;AO=10;CIGAR=1X;DP=47;DPB=47;DPRA=0.516129;EPP=24.725;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=343;QR=1074;RO=37;RPL=10;RPP=24.725;RPPR=83.3548;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:4,7:4:87:7:241:-18.7151,0,-4.73531 0/1:5:2,3:2:65:3:102:-8.01165,0,-4.66788 0/0:21:21,0:21:643:0:0:0,-6.32163,-58.1645 0/0:10:10,0:10:279:0:0:0,-3.0103,-25.3842 dDocent_Contig_13495 36 . C G 121.616 . AB=0.5;ABP=3.0103;AC=1;AF=0.125;AN=8;AO=3;CIGAR=5M1X1M;DP=45;DPB=42.1429;DPRA=0.8;EPP=9.52472;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.815789;PAO=0;PQA=0;PQR=0;PRO=0;QA=117;QR=1474;RO=38;RPL=0;RPP=9.52472;RPPR=85.5263;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:12:12,0,0:12:466:0,0:0,0:0,-3.61236,-42.2904,-3.61236,-42.2904,-42.2904 0|1:6:3,0,3:3:113:0,3:0,117:-9.1042,-10.0073,-19.2607,0,-9.63645,-8.73336 0|0:24:20,4,0:20:782:4,0:148,0:-6.45506,0,-63.48,-12.4757,-64.6841,-76.7865 0|0:3:3,0,0:3:113:0,0:0,0:0,-0.90309,-10.5395,-0.90309,-10.5395,-10.5395 dDocent_Contig_13496 17 . T C 130.334 . AB=0.155172;ABP=62.913;AC=2;AF=0.25;AN=8;AO=9;CIGAR=1X;DP=95;DPB=95;DPRA=1.56757;EPP=22.5536;EPPR=189.757;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.988372;PAO=0;PQA=0;PQR=0;PRO=0;QA=368;QR=3399;RO=86;RPL=0;RPP=22.5536;RPPR=189.757;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=86;SRP=189.757;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:49:42,7:42:1670:7:287:-11.4548,0,-135.782 0/0:17:17,0:17:686:0:0:0,-5.11751,-62.0682 0/0:20:20,0:20:771:0:0:0,-6.0206,-69.707 0/1:9:7,2:7:272:2:81:-4.97646,0,-22.1338 dDocent_Contig_13497 57 . G A 50.5528 . AB=0.117647;ABP=67.7713;AC=2;AF=0.25;AN=8;AO=6;CIGAR=1X;DP=62;DPB=62;DPRA=4.63636;EPP=16.0391;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=242;QR=2171;RO=56;RPL=6;RPP=16.0391;RPPR=124.613;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:24,4:24:956:4:161:-6.44643,0,-77.9123 0/1:23:21,2:21:803:2:81:-0.762044,0,-65.6588 0/0:10:10,0:10:371:0:0:0,-3.0103,-33.7335 0/0:1:1,0:1:41:0:0:0,-0.30103,-4.09457 dDocent_Contig_13498 31 . G C 270.888 . AB=0.461538;ABP=3.34437;AC=3;AF=0.375;AN=8;AO=12;CIGAR=1X;DP=31;DPB=31;DPRA=1.73333;EPP=29.068;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=435;QR=680;RO=19;RPL=0;RPP=29.068;RPPR=44.2683;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:8:4,4:4:142:4:156:-12.009,0,-10.7192 0/1:5:4,1:4:144:1:35:-1.99348,0,-11.808 0/1:13:6,7:6:209:7:244:-18.3821,0,-15.2359 0/0:5:5,0:5:185:0:0:0,-1.50515,-17.01 dDocent_Contig_13499 13 . G A 159.431 . AB=0.4;ABP=4.31318;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=132;DPB=132;DPRA=0.384615;EPP=16.0391;EPPR=276.616;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=58.7619;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=242;QR=4961;RO=126;RPL=0;RPP=16.0391;RPPR=276.616;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=126;SRP=276.616;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:39:39,0:39:1536:0:0:0,-11.7402,-138.48 0/0:42:42,0:42:1624:0:0:0,-12.6433,-146.393 0/0:36:36,0:36:1435:0:0:0,-10.8371,-125.892 0/1:15:9,6:9:366:6:242:-17.6421,0,-28.7897 dDocent_Contig_13502 15 . G A 849.772 . AB=0.285714;ABP=16.9698;AC=1;AF=0.125;AN=8;AO=10;CIGAR=2X;DP=61;DPB=61;DPRA=0;EPP=24.725;EPPR=52.9542;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=386;QR=908;RO=23;RPL=0;RPP=24.725;RPPR=52.9542;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:19:5,8,6:5:198:8,6:305,240:-26.9786,-3.47741,-17.364,-8.70568,0,-23.2018 0|0:12:3,0,9:3:120:0,9:0,352:-28.4244,-29.3275,-39.2148,0,-10.2846,-7.57533 0|0:16:5,2,9:5:194:2,9:81,356:-27.7845,-22.6088,-37.942,0,-9.24195,-13.2167 0|0:14:10,0,4:10:396:0,4:0,145:-9.18753,-12.1978,-44.8146,0,-32.9885,-31.7844 dDocent_Contig_13503 40 . G A 185.786 . AB=0.222222;ABP=33.1696;AC=2;AF=0.25;AN=8;AO=10;CIGAR=1X3M2D3M;DP=51;DPB=48.7778;DPRA=7.5;EPP=24.725;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.853659;PAO=0;PQA=0;PQR=0;PRO=0;QA=386;QR=1581;RO=41;RPL=0;RPP=24.725;RPPR=92.0407;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:29:26,3:26:1000:3:120:-2.45782,0,-81.573 0|0:5:5,0:5:200:0:0:0,-1.50515,-18.3801 0|0:1:1,0:1:32:0:0:0,-0.30103,-3.19931 0|1:16:9,7:9:349:7:266:-19.4818,0,-26.9521 dDocent_Contig_13504 54 . C T 334.669 . AB=0.214286;ABP=12.937;AC=1;AF=0.125;AN=8;AO=3;CIGAR=2X;DP=53;DPB=53;DPRA=14;EPP=9.52472;EPPR=76.8404;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=112;QR=1310;RO=34;RPL=3;RPP=9.52472;RPPR=76.8404;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:14:10,3,1:10:397:3,1:112,41:-6.13154,0,-31.7666,-5.74866,-29.2844,-38.1471 0|0:19:7,0,10:7:279:0,10:0,361:-27.5412,-29.6484,-52.6521,0,-23.1879,-20.1776 0|0:19:16,0,3:16:609:0,3:0,117:-5.19026,-10.0067,-59.9412,0,-50.3226,-49.4196 0|0:1:1,0,0:1:25:0,0:0,0:0,-0.30103,-2.49986,-0.30103,-2.49986,-2.49986 dDocent_Contig_13505 79 . A G 809.26 . AB=0.266667;ABP=17.1973;AC=5;AF=0.625;AN=8;AO=29;CIGAR=1X;DP=52;DPB=52;DPRA=0;EPP=65.983;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1087;QR=885;RO=23;RPL=29;RPP=65.983;RPPR=52.9542;RPR=0;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:9,3:9:340:3:110:-6.64725,0,-27.3429 1/1:22:1,21:1:39:21:789:-67.4339,-2.7261,0 0/1:12:9,3:9:350:3:111:-6.73976,0,-28.249 0/1:6:4,2:4:156:2:77:-5.50296,0,-12.6111 dDocent_Contig_13506 38 . T C 117.575 . AB=0;ABP=0;AC=2;AF=0.333333;AN=6;AO=3;CIGAR=1X;DP=29;DPB=29;DPRA=0.230769;EPP=9.52472;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.333333;PAIREDR=0.961538;PAO=0;PQA=0;PQR=0;PRO=0;QA=121;QR=897;RO=26;RPL=0;RPP=9.52472;RPPR=59.4686;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:121:-11.2802,-0.90309,0 ./.:.:.:.:.:.:.:. 0/0:8:8,0:8:268:0:0:0,-2.40824,-24.4446 0/0:18:18,0:18:629:0:0:0,-5.41854,-56.9333 dDocent_Contig_13507 116 . A C 122.873 . AB=0.4;ABP=3.87889;AC=3;AF=0.5;AN=6;AO=5;CIGAR=1X;DP=16;DPB=16;DPRA=1.1;EPP=13.8677;EPPR=26.8965;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=179;QR=392;RO=11;RPL=0;RPP=13.8677;RPPR=26.8965;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=26.8965;SRR=11;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5,0:5:178:0:0:0,-1.50515,-16.3686 0/1:10:6,4:6:214:4:143:-10.2111,0,-16.5975 ./.:.:.:.:.:.:.:. 1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0 dDocent_Contig_13509 13 . T C 33.7166 . AB=0.2;ABP=10.8276;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X;DP=31;DPB=31;DPRA=1.42857;EPP=7.35324;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.965517;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=1141;RO=29;RPL=0;RPP=7.35324;RPPR=65.983;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:8,2:8:317:2:82:-4.76938,0,-25.8845 0/0:6:6,0:6:242:0:0:0,-1.80618,-22.1569 0/0:6:6,0:6:243:0:0:0,-1.80618,-22.248 0/0:9:9,0:9:339:0:0:0,-2.70927,-30.8602 dDocent_Contig_13510 133 . A G 167.924 . AB=0.230769;ABP=27.5646;AC=1;AF=0.25;AN=4;AO=9;CIGAR=1X;DP=57;DPB=57;DPRA=2.16667;EPP=22.5536;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=332;QR=1755;RO=48;RPL=0;RPP=22.5536;RPPR=107.241;RPR=9;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=107.241;SRR=48;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:39:30,9:30:1105:9:332:-18.4913,0,-88.0124 0/0:18:18,0:18:650:0:0:0,-5.41854,-58.8309 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_13511 7 . G A 124.022 . AB=0.3;ABP=9.95901;AC=2;AF=0.25;AN=8;AO=6;CIGAR=1X;DP=39;DPB=39;DPRA=1.05263;EPP=16.0391;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=234;QR=1084;RO=33;RPL=0;RPP=16.0391;RPPR=74.6689;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:10:10,0:10:328:0:0:0,-3.0103,-29.8332 0/1:14:11,3:11:369:3:117:-6.69596,0,-29.3128 0/0:9:9,0:9:291:0:0:0,-2.70927,-26.5045 0/1:6:3,3:3:96:3:117:-9.1042,0,-7.15001 dDocent_Contig_13513 63 . A T 39.4562 . AB=0.142857;ABP=34.0313;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=65;DPB=65;DPRA=2.27027;EPP=11.6962;EPPR=135.47;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=149;QR=2305;RO=61;RPL=4;RPP=11.6962;RPPR=135.47;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=61;SRP=135.47;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:24,4:24:897:4:149:-5.34349,0,-72.6158 0/0:19:19,0:19:736:0:0:0,-5.71957,-66.5711 0/0:6:6,0:6:231:0:0:0,-1.80618,-21.1579 0/0:12:12,0:12:441:0:0:0,-3.61236,-40.0282 dDocent_Contig_13514 28 . A G 273.919 . AB=0.6;ABP=4.31318;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X;DP=46;DPB=46;DPRA=1.45161;EPP=22.5536;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.972973;PAO=0;PQA=0;PQR=0;PRO=0;QA=366;QR=1490;RO=37;RPL=0;RPP=22.5536;RPPR=83.3548;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:6,9:6:241:9:366:-28.7897,0,-17.5509 0/0:21:21,0:21:848:0:0:0,-6.32163,-76.6333 0/0:7:7,0:7:279:0:0:0,-2.10721,-25.4808 0/0:3:3,0:3:122:0:0:0,-0.90309,-11.3725 dDocent_Contig_13517 15 . T G 864.837 . AB=0.430556;ABP=6.02623;AC=2;AF=0.25;AN=8;AO=31;CIGAR=1X;DP=147;DPB=147;DPRA=0.96;EPP=70.3259;EPPR=254.901;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1232;QR=4644;RO=116;RPL=0;RPP=70.3259;RPPR=254.901;RPR=31;RUN=1;SAF=31;SAP=70.3259;SAR=0;SRF=116;SRP=254.901;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:70:70,0:70:2808:0:0:0,-21.0721,-252.825 0/1:63:37,26:37:1471:26:1031:-74.1199,0,-113.676 0/0:5:5,0:5:203:0:0:0,-1.50515,-18.6531 0/1:9:4,5:4:162:5:201:-15.7616,0,-12.2577 dDocent_Contig_13518 22 . T G 186.935 . AB=0.4;ABP=4.31318;AC=2;AF=0.25;AN=8;AO=6;CIGAR=1M2D1X3M1X;DP=35;DPB=33.5;DPRA=1.25;EPP=16.0391;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=229;QR=1021;RO=26;RPL=0;RPP=16.0391;RPPR=59.4686;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:10:7,3,0:7:277:3,0:112,0:-7.436,0,-22.2887,-9.54321,-23.1918,-32.3553 0|1:5:2,3,0:2:81:3,0:117,0:-9.40506,0,-6.18058,-10.0071,-7.08367,-16.6922 0|0:14:11,0,3:11:430:0,3:0,123:-7.25037,-10.5617,-45.8989,0,-35.7426,-34.8395 0|0:6:6,0,0:6:233:0,0:0,0:0,-1.80618,-21.3393,-1.80618,-21.3393,-21.3393 dDocent_Contig_13519 59 . T A 77.3728 . AB=0.4;ABP=3.87889;AC=2;AF=0.25;AN=8;AO=4;CIGAR=1X;DP=33;DPB=33;DPRA=0.434783;EPP=11.6962;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.5;PAIREDR=0.758621;PAO=0;PQA=0;PQR=0;PRO=0;QA=149;QR=1095;RO=29;RPL=4;RPP=11.6962;RPPR=65.983;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:11,0:11:413:0:0:0,-3.31133,-37.5173 0/1:6:4,2:4:154:2:71:-4.93572,0,-12.4273 0/0:12:12,0:12:451:0:0:0,-3.61236,-40.9345 0/1:4:2,2:2:77:2:78:-6.19935,0,-6.10502 dDocent_Contig_13520 10 . A G 1316.7 . AB=0.335227;ABP=44.515;AC=4;AF=0.5;AN=8;AO=59;CIGAR=1X1M1X;DP=176;DPB=176;DPRA=0;EPP=131.127;EPPR=257.073;GTI=0;LEN=1;MEANALT=1;MQM=53.1186;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.813559;PAIREDR=0.794872;PAO=0;PQA=0;PQR=0;PRO=0;QA=2180;QR=4440;RO=117;RPL=0;RPP=131.127;RPPR=257.073;RPR=59;RUN=1;SAF=59;SAP=131.127;SAR=0;SRF=117;SRP=257.073;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:29:20,9:20:745:9:317:-19.6744,0,-58.6312 0|1:56:37,19:37:1453:19:696:-43.7195,0,-114.173 0|1:44:24,20:24:917:20:741:-51.564,0,-69.5899 0|1:47:36,11:36:1325:11:426:-24.1096,0,-105.376 dDocent_Contig_13522 32 . A T 184.888 . AB=0.272727;ABP=17.8158;AC=3;AF=0.5;AN=6;AO=9;CIGAR=1X;DP=33;DPB=33;DPRA=0;EPP=22.5536;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=364;QR=957;RO=24;RPL=0;RPP=22.5536;RPPR=55.1256;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:13,4:13:526:4:160:-9.66592,0,-42.5695 0/1:13:9,4:9:350:4:163:-11.145,0,-27.9408 0/1:3:2,1:2:81:1:41:-3.19148,0,-6.78264 ./.:.:.:.:.:.:.:. dDocent_Contig_13523 20 . T C 44.819 . AB=0.4;ABP=3.44459;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X;DP=25;DPB=25;DPRA=0.75;EPP=7.35324;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=8.67362e-19;PAIRED=0;PAIREDR=0.73913;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=927;RO=23;RPL=0;RPP=7.35324;RPPR=52.9542;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:10:10,0:10:398:0:0:0,-3.0103,-36.1732 0/0:8:8,0:8:327:0:0:0,-2.40824,-29.8001 0/1:5:3,2:3:123:2:81:-6.18058,0,-9.95964 0/0:2:2,0:2:79:0:0:0,-0.60206,-7.49763 dDocent_Contig_13524 7 . G T 387.233 . AB=0.441176;ABP=4.03217;AC=2;AF=0.5;AN=4;AO=15;CIGAR=1X;DP=34;DPB=34;DPRA=0;EPP=35.5824;EPPR=39.9253;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=0.133333;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=575;QR=515;RO=17;RPL=0;RPP=35.5824;RPPR=39.9253;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:5,13:5:152:13:503:-40.0705,0,-8.41621 0/1:15:12,2:12:363:2:72:-2.2425,0,-28.3627 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_13525 179 . C T 79.5614 . AB=0;ABP=0;AC=2;AF=0.333333;AN=6;AO=2;CIGAR=1X;DP=18;DPB=18;DPRA=0.25;EPP=7.35324;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=631;RO=16;RPL=2;RPP=7.35324;RPPR=37.7539;RPR=0;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=37.7539;SRR=16;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:8:8,0:8:315:0:0:0,-2.40824,-28.7116 0/0:8:8,0:8:316:0:0:0,-2.40824,-28.8048 1/1:2:0,2:0:0:2:82:-7.77968,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_13526 16 . G A 2814.02 . AB=0.291339;ABP=51.0392;AC=7;AF=0.875;AN=8;AO=37;CIGAR=1X5M;DP=127;DPB=127;DPRA=0;EPP=83.3548;EPPR=42.0968;GTI=0;LEN=1;MEANALT=2.25;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=1.38778e-17;PAIRED=0.783784;PAIREDR=0.944444;PAO=0;PQA=0;PQR=0;PRO=0;QA=1424;QR=710;RO=18;RPL=0;RPP=83.3548;RPPR=42.0968;RPR=37;RUN=1;SAF=37;SAP=83.3548;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:31:2,15,14:2:78:15,14:591,531:-85.1046,-37.1106,-39.008,-42.1808,0,-44.3775 1|1:34:1,26,7:1:40:26,7:1031,280:-104.331,-19.7703,-15.2386,-81.5664,0,-82.7544 0|1:37:9,20,7:9:352:20,7:773,272:-60.7666,0,-22.9369,-41.1234,-6.59982,-67.9619 1|1:25:6,10,9:6:240:10,9:392,341:-38.597,-8.16164,-24.9302,-12.4562,0,-29.5204 dDocent_Contig_13527 54 . A C 318.353 . AB=0.225352;ABP=49.5287;AC=2;AF=0.25;AN=8;AO=17;CIGAR=1X;DP=99;DPB=99;DPRA=2.02381;EPP=39.9253;EPPR=170.321;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=662;QR=3151;RO=81;RPL=17;RPP=39.9253;RPPR=170.321;RPR=0;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=81;SRP=178.9;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:50:39,11:39:1506:11:421:-23.1749,0,-120.722 0/1:21:16,5:16:616:5:200:-12.0577,0,-49.4453 0/0:14:14,0:14:547:0:0:0,-4.21442,-49.5691 0/0:14:12,1:12:482:1:41:0,-0.213414,-39.6495 dDocent_Contig_13528 27 . C G 33.7166 . AB=0.222222;ABP=9.04217;AC=1;AF=0.25;AN=4;AO=2;CIGAR=1X;DP=15;DPB=15;DPRA=1.5;EPP=7.35324;EPPR=31.2394;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=531;RO=13;RPL=0;RPP=7.35324;RPPR=31.2394;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=13;SRP=31.2394;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:7,2:7:285:2:82:-5.07041,0,-23.3151 0/0:6:6,0:6:246:0:0:0,-1.80618,-22.5201 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_13529 25 . T C 99.0148 . AB=0.138462;ABP=76.807;AC=3;AF=0.375;AN=8;AO=9;CIGAR=1X;DP=90;DPB=90;DPRA=0.866667;EPP=22.5536;EPPR=176.728;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.9;PAO=0;PQA=0;PQR=0;PRO=0;QA=355;QR=3123;RO=80;RPL=0;RPP=22.5536;RPPR=176.728;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=80;SRP=176.728;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:25:25,0:25:970:0:0:0,-7.52575,-87.6052 0/1:23:21,2:21:818:2:77:-0.385452,0,-67.0131 0/1:35:29,6:29:1135:6:237:-11.1651,0,-91.9007 0/1:7:5,1:5:200:1:41:-2.04366,0,-16.4396 dDocent_Contig_13530 189 . C T 67.7952 . AB=0.333333;ABP=5.18177;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=33;DPB=33;DPRA=1.125;EPP=9.52472;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=120;QR=1140;RO=30;RPL=3;RPP=9.52472;RPPR=68.1545;RPR=0;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=68.1545;SRR=30;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:8:8,0:8:309:0:0:0,-2.40824,-28.167 0/0:12:12,0:12:456:0:0:0,-3.61236,-41.3827 0/1:9:6,3:6:242:3:120:-8.47842,0,-19.4481 0/0:4:4,0:4:133:0:0:0,-1.20412,-12.2874 dDocent_Contig_13533 10 . G A 222.75 . AB=0.36;ABP=7.26639;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X2M1X;DP=71;DPB=71;DPRA=1.63043;EPP=22.5536;EPPR=126.784;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=346;QR=1951;RO=57;RPL=0;RPP=22.5536;RPPR=126.784;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:24:21,0,2:21:731:0,2:0,44:0,-6.32163,-65.8173,-3.06436,-62.4709,-61.8689 0|1:25:16,9,0:16:531:9,0:346,0:-23.9735,0,-40.5751,-28.7899,-43.2843,-71.709 0|0:19:18,0,0:18:612:0,0:0,0:0,-5.41854,-55.0395,-5.41854,-55.0395,-55.0395 0|0:3:2,0,0:2:77:0,0:0,0:0,-0.60206,-6.92114,-0.60206,-6.92114,-6.92114 dDocent_Contig_13534 20 . A C 189.082 . AB=0.857143;ABP=10.7656;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=32;DPB=32;DPRA=0.84;EPP=16.0391;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=4.33681e-19;PAIRED=1;PAIREDR=0.961538;PAO=0;PQA=0;PQR=0;PRO=0;QA=238;QR=1000;RO=26;RPL=0;RPP=16.0391;RPPR=59.4686;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:6:6,0:6:234:0:0:0,-1.80618,-21.4292 0/1:7:1,6:1:32:6:238:-19.686,0,-1.0921 0/0:12:12,0:12:466:0:0:0,-3.61236,-42.2845 0/0:7:7,0:7:268:0:0:0,-2.10721,-24.4815 dDocent_Contig_13535 92 . G T 31.4557 . AB=0.4;ABP=3.44459;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=33;DPB=33;DPRA=0.357143;EPP=7.35324;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=65;QR=1033;RO=31;RPL=2;RPP=7.35324;RPPR=70.3259;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 0/1:5:3,2:3:103:2:65:-4.66814,0,-8.10482 0/0:20:20,0:20:654:0:0:0,-6.0206,-59.1686 0/0:8:8,0:8:276:0:0:0,-2.40824,-25.1759 dDocent_Contig_13536 12 . A G 75.7926 . AB=0;ABP=0;AC=2;AF=0.333333;AN=6;AO=2;CIGAR=1X;DP=15;DPB=15;DPRA=0.307692;EPP=7.35324;EPPR=31.2394;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=78;QR=513;RO=13;RPL=0;RPP=7.35324;RPPR=31.2394;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=13;SRP=31.2394;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:6:6,0:6:236:0:0:0,-1.80618,-21.6118 ./.:.:.:.:.:.:.:. 0/0:7:7,0:7:277:0:0:0,-2.10721,-25.2996 1/1:2:0,2:0:0:2:78:-7.40278,-0.60206,0 dDocent_Contig_13537 38 . G T 131.647 . AB=0.315789;ABP=8.61041;AC=2;AF=0.25;AN=8;AO=6;CIGAR=2X;DP=75;DPB=75;DPRA=0.339286;EPP=16.0391;EPPR=152.842;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=239;QR=2658;RO=69;RPL=0;RPP=16.0391;RPPR=152.842;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=69;SRP=152.842;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:43:43,0:43:1635:0:0:0,-12.9443,-147.38 0|0:13:13,0:13:514:0:0:0,-3.91339,-46.6042 0|1:12:9,3:9:355:3:119:-7.48214,0,-28.6994 0|1:7:4,3:4:154:3:120:-9.08048,0,-12.1231 dDocent_Contig_13538 18 . G A 988.586 . AB=0.523077;ABP=3.31097;AC=3;AF=0.375;AN=8;AO=34;CIGAR=1X;DP=66;DPB=66;DPRA=21.6667;EPP=76.8404;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1364;QR=1260;RO=32;RPL=0;RPP=76.8404;RPPR=72.4974;RPR=34;RUN=1;SAF=34;SAP=76.8404;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:33:20,13:20:789:13:517:-36.9435,0,-61.3902 0/1:22:5,17:5:188:17:686:-55.4475,0,-10.6542 0/1:10:6,4:6:242:4:161:-11.865,0,-19.1466 0/0:1:1,0:1:41:0:0:0,-0.30103,-4.09457 dDocent_Contig_13539 38 . G T 253.603 . AB=0.384615;ABP=6.01695;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=42;DPB=42;DPRA=0.8125;EPP=24.725;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=400;QR=1250;RO=31;RPL=0;RPP=24.725;RPPR=70.3259;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:16:16,0:16:650:0:0:0,-4.81648,-58.8324 0/1:16:13,2:13:518:2:81:-2.79556,0,-42.0858 0/1:10:2,8:2:82:8:319:-26.0648,0,-4.76938 ./.:.:.:.:.:.:.:. dDocent_Contig_13540 126 . A T 148.888 . AB=0.75;ABP=7.35324;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=39;DPB=39;DPRA=1.29412;EPP=18.2106;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=237;QR=1059;RO=32;RPL=0;RPP=18.2106;RPPR=72.4974;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=72.4974;SRR=32;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:8:2,6:2:68:6:204:-16.2856,0,-4.04964 0/0:6:6,0:6:183:0:0:0,-1.80618,-16.7705 0/0:14:13,1:13:437:1:33:0,-0.915285,-36.3546 0/0:11:11,0:11:371:0:0:0,-3.31133,-33.7166 dDocent_Contig_13541 59 . C A 71.9674 . AB=0.134615;ABP=63.3104;AC=2;AF=0.25;AN=8;AO=7;CIGAR=1X;DP=81;DPB=81;DPRA=1.7931;EPP=18.2106;EPPR=163.699;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=283;QR=2891;RO=74;RPL=7;RPP=18.2106;RPPR=163.699;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=74;SRP=163.699;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:47:42,5:42:1651:5:202:-4.41367,0,-134.671 0/0:21:21,0:21:801:0:0:0,-6.32163,-72.3909 0/0:8:8,0:8:321:0:0:0,-2.40824,-29.2579 0/1:5:3,2:3:118:2:81:-6.18058,0,-9.49705 dDocent_Contig_13542 36 . T C 43.9192 . AB=0.25;ABP=9.52472;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=45;DPB=45;DPRA=1.09091;EPP=9.52472;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.690476;PAO=0;PQA=0;PQR=0;PRO=0;QA=104;QR=1685;RO=42;RPL=0;RPP=9.52472;RPPR=94.2121;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:13:13,0:13:527:0:0:0,-3.91339,-47.7763 0/1:12:9,3:9:357:3:104:-6.09073,0,-28.879 0/0:17:17,0:17:691:0:0:0,-5.11751,-62.5183 0/0:3:3,0:3:110:0:0:0,-0.90309,-10.2572 dDocent_Contig_13544 13 . T G 176.729 . AB=0.2;ABP=46.0055;AC=3;AF=0.5;AN=6;AO=11;CIGAR=1X;DP=55;DPB=55;DPRA=0;EPP=26.8965;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=428;QR=1743;RO=44;RPL=0;RPP=26.8965;RPPR=98.5551;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:25,5:25:998:5:197:-9.07513,0,-81.0815 0/1:16:14,2:14:544:2:72:-2.01876,0,-44.4819 0/1:9:5,4:5:201:4:159:-11.9816,0,-15.7616 ./.:.:.:.:.:.:.:. dDocent_Contig_13545 70 . A C 106.013 . AB=0.216216;ABP=28.8919;AC=3;AF=0.375;AN=8;AO=8;CIGAR=1X;DP=40;DPB=40;DPRA=4.11111;EPP=20.3821;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=274;QR=1066;RO=32;RPL=8;RPP=20.3821;RPPR=72.4974;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:4:1,3:1:33:3:105:-8.59204,0,-2.09501 0/1:20:18,2:18:593:2:70:-0.626796,0,-47.6594 0/1:13:10,3:10:347:3:99:-5.32373,0,-27.6519 0/0:3:3,0:3:93:0:0:0,-0.90309,-8.67736 dDocent_Contig_13546 18 . A G 56.4275 . AB=0.2;ABP=18.6449;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1X;DP=30;DPB=30;DPRA=1;EPP=11.6962;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=160;QR=1043;RO=26;RPL=0;RPP=11.6962;RPPR=59.4686;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:10:10,0:10:403:0:0:0,-3.0103,-36.6299 0/1:13:11,2:11:436:2:80:-3.67819,0,-35.6771 0/1:7:5,2:5:204:2:80:-5.48436,0,-16.6368 ./.:.:.:.:.:.:.:. dDocent_Contig_13547 25 . G C 169.076 . AB=0.3;ABP=6.48466;AC=4;AF=0.5;AN=8;AO=6;CIGAR=1X;DP=25;DPB=25;DPRA=0.361111;EPP=16.0391;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.166667;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=242;QR=753;RO=19;RPL=0;RPP=16.0391;RPPR=44.2683;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:7:6,1:6:229:1:38:-1.69006,0,-18.866 0/0:12:12,0:12:483:0:0:0,-3.61236,-43.8207 0/1:3:1,2:1:41:2:82:-6.87659,0,-3.19148 1/1:3:0,3:0:0:3:122:-11.3725,-0.90309,0 dDocent_Contig_13549 21 . T G 725.639 . AB=0.25641;ABP=63.3104;AC=2;AF=0.25;AN=8;AO=30;CIGAR=1M1X5M;DP=123;DPB=121.857;DPRA=6.5;EPP=68.1545;EPPR=181.071;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1164;QR=3214;RO=82;RPL=0;RPP=68.1545;RPPR=181.071;RPR=30;RUN=1;SAF=30;SAP=68.1545;SAR=0;SRF=82;SRP=181.071;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:72:39,0,26,7:39:1538:0,26,7:0,1003,274:-70.6049,-82.3451,-208.89,0,-126.543,-118.716,-59.8197,-186.366,-104.02,-184.258 0|0:33:26,4,3,0:26:1012:4,3,0:160,120,0:-5.35355,0,-81.9571,-3.29508,-73.2749,-85.5536,-13.1803,-83.1613,-86.4567,-96.3427 0|0:6:6,0,0,0:6:231:0,0,0:0,0,0:0,-1.80618,-21.1554,-1.80618,-21.1554,-21.1554,-1.80618,-21.1554,-21.1554,-21.1554 0|1:12:11,0,1,0:11:433:0,1,0:0,41,0:-0.482207,-3.79354,-39.3997,0,-36.0143,-35.7132,-3.79354,-39.3997,-36.0143,-39.3997 dDocent_Contig_13550 74 . G A 523.539 . AB=0.383333;ABP=10.1038;AC=5;AF=0.625;AN=8;AO=25;CIGAR=1X;DP=62;DPB=62;DPRA=0;EPP=57.2971;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.4;PAIREDR=0.756757;PAO=0;PQA=0;PQR=0;PRO=0;QA=828;QR=1241;RO=37;RPL=18;RPP=13.5202;RPPR=10.1116;RPR=7;RUN=1;SAF=18;SAP=13.5202;SAR=7;SRF=24;SRP=10.1116;SRR=13;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:15,8:15:498:8:269:-17.615,0,-38.2145 0/1:22:12,10:12:404:10:334:-23.7622,0,-30.0627 0/1:15:10,5:10:339:5:160:-10.2009,0,-26.3237 1/1:2:0,2:0:0:2:65:-6.17353,-0.60206,0 dDocent_Contig_13552 58 . A G 895.73 . AB=0.586957;ABP=6.03148;AC=5;AF=0.625;AN=8;AO=31;CIGAR=1X;DP=50;DPB=50;DPRA=0;EPP=70.3259;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.612903;PAIREDR=0.894737;PAO=0;PQA=0;PQR=0;PRO=0;QA=1193;QR=728;RO=19;RPL=31;RPP=70.3259;RPPR=44.2683;RPR=0;RUN=1;SAF=31;SAP=70.3259;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:9,10:9:331:10:377:-28.5583,0,-24.4146 0/1:13:8,5:8:316:5:198:-14.2836,0,-24.8919 0/1:14:2,12:2:81:12:463:-37.8001,0,-3.47131 1/1:4:0,4:0:0:4:155:-14.3253,-1.20412,0 dDocent_Contig_13554 24 . T C 315.078 . AB=0.225352;ABP=49.5287;AC=3;AF=0.375;AN=8;AO=17;CIGAR=1X;DP=86;DPB=86;DPRA=0;EPP=39.9253;EPPR=152.842;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=675;QR=2682;RO=69;RPL=0;RPP=39.9253;RPPR=152.842;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=69;SRP=152.842;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:10,7:10:361:7:279:-20.364,0,-27.7017 0/1:17:13,4:13:516:4:156:-9.29961,0,-41.6693 0/1:37:32,5:32:1249:5:200:-7.24181,0,-101.553 0/0:15:14,1:14:556:1:40:0,-0.519771,-46.3856 dDocent_Contig_13555 66 . C T 33.0751 . AB=0.137931;ABP=36.0317;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=2X;DP=30;DPB=30;DPRA=14.5;EPP=11.6962;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=157;QR=982;RO=26;RPL=4;RPP=11.6962;RPPR=59.4686;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:20:17,3:17:640:3:116:-4.79568,0,-51.9038 0|1:9:8,1:8:303:1:41:-1.3853,0,-24.9156 .:.:.:.:.:.:.:. 0|0:1:1,0:1:39:0:0:0,-0.30103,-3.89656 dDocent_Contig_13556 11 . C G 41.7146 . AB=0.137931;ABP=36.0317;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=109;DPB=109;DPRA=1.01852;EPP=13.8677;EPPR=228.843;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=198;QR=3949;RO=104;RPL=0;RPP=13.8677;RPPR=228.843;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=104;SRP=228.843;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:27:27,0:27:1005:0:0:0,-8.12781,-90.7442 0/1:29:25,4:25:970:4:158:-5.8704,0,-78.8721 0/0:27:27,0:27:1014:0:0:0,-8.12781,-91.554 0/0:26:25,1:25:960:1:40:0,-3.8311,-82.7049 dDocent_Contig_13558 51 . C G 91.9775 . AB=0.307692;ABP=7.18621;AC=1;AF=0.125;AN=8;AO=4;CIGAR=3X;DP=29;DPB=29;DPRA=2.4375;EPP=11.6962;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.68;PAO=0;PQA=0;PQR=0;PRO=0;QA=157;QR=984;RO=25;RPL=4;RPP=11.6962;RPPR=57.2971;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:13:9,4:9:359:4:157:-10.5956,0,-28.7601 0|0:4:4,0:4:158:0:0:0,-1.20412,-14.6007 0|0:5:5,0:5:189:0:0:0,-1.50515,-17.373 0|0:7:7,0:7:278:0:0:0,-2.10721,-25.3904 dDocent_Contig_13559 13 . T A 710.776 . AB=0.314607;ABP=29.5803;AC=5;AF=0.625;AN=8;AO=29;CIGAR=1X;DP=90;DPB=90;DPRA=0;EPP=65.983;EPPR=135.47;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1131;QR=2431;RO=61;RPL=0;RPP=65.983;RPPR=135.47;RPR=29;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=61;SRP=135.47;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:35:30,5:30:1203:5:195:-7.38768,0,-98.0097 0/1:42:27,15:27:1068:15:580:-39.8923,0,-83.7678 0/1:12:4,8:4:160:8:315:-25.1004,0,-11.1714 1/1:1:0,1:0:0:1:41:-4.09457,-0.30103,0 dDocent_Contig_13560 15 . G A 50.8934 . AB=0.214286;ABP=12.937;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X2M1X;DP=69;DPB=69;DPRA=2.63158;EPP=11.6962;EPPR=144.156;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.953846;PAO=0;PQA=0;PQR=0;PRO=0;QA=156;QR=2477;RO=65;RPL=0;RPP=11.6962;RPPR=144.156;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=65;SRP=144.156;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:10:10,0:10:380:0:0:0,-3.0103,-34.5532 0|0:36:35,1:35:1338:1:38:0,-7.03981,-116.909 0|1:14:11,3:11:418:3:118:-6.7883,0,-33.7574 0|0:9:9,0:9:341:0:0:0,-2.70927,-31.0463 dDocent_Contig_13561 132 . G T 33.2649 . AB=0.2;ABP=18.6449;AC=2;AF=0.25;AN=8;AO=6;CIGAR=1X1M2X;DP=49;DPB=49;DPRA=2.38889;EPP=16.0391;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1.33333;MQM=44.6667;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=0.166667;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=207;QR=1370;RO=42;RPL=0;RPP=16.0391;RPPR=94.2121;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=94.2121;SRR=42;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:23:21,2:21:668:2:69:0,-0.456905,-53.9555 0|1:15:11,3:11:363:3:103:-4.92933,0,-28.638 0|0:6:6,0:6:205:0:0:0,-1.80618,-18.7854 0|1:5:4,1:4:134:1:35:-1.99348,0,-10.8861 dDocent_Contig_13562 19 . G A 562.462 . AB=0.354167;ABP=11.8771;AC=6;AF=0.75;AN=8;AO=19;CIGAR=2X3M1X2M;DP=50;DPB=50;DPRA=0;EPP=44.2683;EPPR=44.2683;GTI=0;LEN=1;MEANALT=2;MQM=55.8947;MQMR=60;NS=4;NUMALT=3;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=741;QR=739;RO=19;RPL=0;RPP=44.2683;RPPR=44.2683;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:18:3,5,9,0:3:119:5,9,0:193,357,0:-34.3035,-19.5529,-27.8452,-5.8528,0,-12.9469,-35.2066,-29.3504,-15.6561,-45.0041 0|1:17:10,0,4,3:10:381:0,4,3:0,159,122:-10.0756,-13.0859,-44.3246,0,-31.231,-30.0268,-3.01881,-34.2577,-21.1618,-33.3546 0|1:13:6,0,4,3:6:239:0,4,3:0,147,120:-9.87579,-11.682,-31.3733,0,-19.6802,-18.4761,-1.77975,-21.4846,-9.79498,-20.5815 1|1:2:0,0,2,0:0:0:0,2,0:0,78,0:-7.38656,-7.38656,-7.38656,-0.60206,-0.60206,0,-7.38656,-7.38656,-0.60206,-7.38656 dDocent_Contig_13563 115 . G A 94.3072 . AB=0.4375;ABP=3.55317;AC=2;AF=0.25;AN=8;AO=8;CIGAR=1X1M1X;DP=35;DPB=35;DPRA=5.5;EPP=20.3821;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=224;QR=752;RO=27;RPL=0;RPP=20.3821;RPPR=61.6401;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=61.6401;SRR=27;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:17:16,1:16:450:1:34:0,-1.7186,-37.3766 0|1:5:3,2:3:93:2:55:-3.71912,0,-7.17307 0|1:11:6,5:6:162:5:135:-9.10718,0,-11.5368 0|0:2:2,0:2:47:0:0:0,-0.60206,-4.46447 dDocent_Contig_13564 24 . A G 149.719 . AB=0.210526;ABP=30.668;AC=2;AF=0.25;AN=8;AO=9;CIGAR=1X3M1X;DP=83;DPB=83;DPRA=2.18182;EPP=22.5536;EPPR=163.699;GTI=0;LEN=1;MEANALT=1;MQM=59.2222;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.918919;PAO=0;PQA=0;PQR=0;PRO=0;QA=346;QR=2868;RO=74;RPL=0;RPP=22.5536;RPPR=163.699;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=74;SRP=163.699;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:34:33,1:33:1291:1:41:0,-6.14045,-112.376 0|1:25:18,7:18:683:7:265:-16.6696,0,-54.2699 0|1:13:12,1:12:465:1:40:-0.0822893,0,-38.2858 0|0:11:11,0:11:429:0:0:0,-3.31133,-38.9638 dDocent_Contig_13566 88 . T C 160.95 . AB=0.277778;ABP=18.4519;AC=4;AF=0.5;AN=8;AO=10;CIGAR=1X;DP=36;DPB=36;DPRA=0;EPP=24.725;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=345;QR=882;RO=26;RPL=10;RPP=24.725;RPPR=59.4686;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:10,1:10:343:1:34:-0.0875811,0,-27.8907 0/1:11:8,3:8:274:3:102:-6.20562,0,-21.6824 0/1:7:3,4:3:91:4:139:-10.7455,0,-6.38421 0/1:7:5,2:5:174:2:70:-4.54019,0,-13.8947 dDocent_Contig_13567 1 . N G 106.306 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=114;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:114:-10.6301,-0.90309,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_13570 4 . T C 68.3772 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X6I2M1X2M1X2M1X;DP=2;DPB=3.2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=72;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. 1|1:2:0,2:0:0:2:72:-6.83664,-0.60206,0 .:.:.:.:.:.:.:. dDocent_Contig_13571 168 . A G 225.663 . AB=0.391304;ABP=5.3706;AC=2;AF=0.25;AN=8;AO=9;CIGAR=1X2M1X;DP=41;DPB=41;DPRA=1.27778;EPP=22.5536;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=357;QR=1255;RO=32;RPL=9;RPP=22.5536;RPPR=72.4974;RPR=0;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=72.4974;SRR=32;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:10:10,0:10:392:0:0:0,-3.0103,-35.6354 0|1:13:10,3:10:396:3:118:-7.0895,0,-32.0825 0|0:8:8,0:8:321:0:0:0,-2.40824,-29.2579 0|1:10:4,6:4:146:6:239:-18.8747,0,-10.4863 dDocent_Contig_13572 16 . G A 69.6425 . AB=0.3;ABP=6.48466;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=62;DPB=62;DPRA=0.576923;EPP=9.52472;EPPR=131.127;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=2385;RO=59;RPL=0;RPP=9.52472;RPPR=131.127;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=59;SRP=131.127;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:7,3:7:284:3:122:-8.36219,0,-22.9237 0/0:10:10,0:10:403:0:0:0,-3.0103,-36.6299 0/0:18:18,0:18:730:0:0:0,-5.41854,-66.024 0/0:24:24,0:24:968:0:0:0,-7.22472,-87.4204 dDocent_Contig_13573 17 . A G 1724.81 . AB=0.490196;ABP=3.09546;AC=5;AF=0.625;AN=8;AO=58;CIGAR=1X;DP=110;DPB=110;DPRA=0;EPP=128.956;EPPR=113.755;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=0.960784;PAO=0;PQA=0;PQR=0;PRO=0;QA=2302;QR=1983;RO=51;RPL=0;RPP=128.956;RPPR=113.755;RPR=58;RUN=1;SAF=58;SAP=128.956;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:37:25,12:25:967:12:456:-30.2377,0,-76.1871 0/1:39:17,21:17:660:21:848:-64.9555,0,-48.042 0/1:26:9,17:9:356:17:681:-53.7912,0,-24.5731 1/1:8:0,8:0:0:8:317:-28.8943,-2.40824,0 dDocent_Contig_13574 9 . C T 31.3585 . AB=0.133333;ABP=38.0434;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=99;DPB=99;DPRA=1.30435;EPP=11.6962;EPPR=209.3;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=54.3158;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=150;QR=3489;RO=95;RPL=0;RPP=11.6962;RPPR=209.3;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=95;SRP=209.3;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:45:45,0:45:1694:0:0:0,-13.5463,-141.005 0/1:30:26,4:26:947:4:150:-4.83447,0,-59.7062 0/0:19:19,0:19:657:0:0:0,-5.71957,-59.4391 0/0:5:5,0:5:191:0:0:0,-1.50515,-17.5585 dDocent_Contig_13575 47 . C T 62.475 . AB=0.162162;ABP=39.6906;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=53;DPB=53;DPRA=6.9375;EPP=16.0391;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=205;QR=1836;RO=47;RPL=0;RPP=16.0391;RPPR=105.07;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:37:31,6:31:1210:6:205:-7.64475,0,-98.0431 0/0:3:3,0:3:116:0:0:0,-0.90309,-10.8175 0/0:12:12,0:12:470:0:0:0,-3.61236,-42.6495 0/0:1:1,0:1:40:0:0:0,-0.30103,-3.99568 dDocent_Contig_13577 52 . T C 3293.16 . AB=0.706667;ABP=58.6579;AC=4;AF=0.5;AN=8;AO=106;CIGAR=1X;DP=150;DPB=150;DPRA=0;EPP=233.186;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.990566;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4228;QR=1698;RO=43;RPL=0;RPP=233.186;RPPR=96.3836;RPR=106;RUN=1;SAF=106;SAP=233.186;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:45:15,29:15:599:29:1147:-90.162,0,-40.892 0/1:45:16,29:16:639:29:1163:-91.3981,0,-44.298 0/1:36:7,29:7:268:29:1168:-94.5622,0,-13.6413 0/1:24:5,19:5:192:19:750:-60.5918,0,-10.4246 dDocent_Contig_13578 17 . T G 246.722 . AB=0.642857;ABP=5.49198;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X;DP=70;DPB=70;DPRA=0.75;EPP=22.5536;EPPR=135.47;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=336;QR=2460;RO=61;RPL=0;RPP=22.5536;RPPR=135.47;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=61;SRP=135.47;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:24:24,0:24:956:0:0:0,-7.22472,-86.3386 0/1:14:5,9:5:205:9:336:-26.3712,0,-14.6206 0/0:21:21,0:21:852:0:0:0,-6.32163,-76.9904 0/0:11:11,0:11:447:0:0:0,-3.31133,-40.5855 dDocent_Contig_13579 97 . C G 219.633 . AB=0.363636;ABP=6.56362;AC=4;AF=0.5;AN=8;AO=10;CIGAR=1X;DP=30;DPB=30;DPRA=1.33333;EPP=24.725;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.95;PAO=0;PQA=0;PQR=0;PRO=0;QA=344;QR=626;RO=20;RPL=10;RPP=24.725;RPPR=46.4397;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:69:-6.55266,-0.60206,0 0/1:8:3,5:3:104:5:170:-13.2265,0,-7.29485 0/1:14:11,3:11:315:3:105:-5.58174,0,-24.4133 0/0:6:6,0:6:207:0:0:0,-1.80618,-18.9682 dDocent_Contig_13580 13 . A G 419.516 . AB=0.272727;ABP=7.94546;AC=0;AF=0;AN=8;AO=3;CIGAR=1X1M1X2M1X2M1X3M1X;DP=63;DPB=63;DPRA=0.647059;EPP=9.52472;EPPR=63.8115;GTI=0;LEN=1;MEANALT=4;MQM=22;MQMR=60;NS=4;NUMALT=7;ODDS=0;PAIRED=0;PAIREDR=0.964286;PAO=0;PQA=0;PQR=0;PRO=0;QA=120;QR=1116;RO=28;RPL=0;RPP=9.52472;RPPR=63.8115;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:17:16,0,0,0,0,1,0,0:16:637:0,0,0,0,1,0,0:0,0,0,0,40,0,0:0,-4.81648,-57.2667,-4.81648,-57.2667,-57.2667,-4.81648,-57.2667,-57.2667,-57.2667,-4.81648,-57.2667,-57.2667,-57.2667,-57.2667,-1.12183,-53.9715,-53.9715,-53.9715,-53.9715,-53.6705,-4.81648,-57.2667,-57.2667,-57.2667,-57.2667,-53.9715,-57.2667,-4.81648,-57.2667,-57.2667,-57.2667,-57.2667,-53.9715,-57.2667,-57.2667 0|0:28:10,0,0,3,0,1,2,12:10:399:0,0,3,0,1,2,12:0,0,98,0,38,81,415:-30.6836,-33.6939,-66.5724,-33.6939,-66.5724,-66.5724,-25.7875,-58.6661,-58.6661,-57.763,-33.6939,-66.5724,-66.5724,-58.6661,-66.5724,-30.5757,-63.4554,-63.4554,-55.5493,-63.4554,-63.1544,-27.0081,-59.8904,-59.8904,-51.9842,-59.8904,-56.7733,-59.2884,0,-32.8847,-32.8847,-24.9868,-32.8847,-29.7685,-26.2027,-29.2723 0|0:11:1,3,0,0,3,2,0,2:1:40:3,0,0,3,2,0,2:120,0,0,115,81,0,75:-12.0271,-7.3497,-9.74749,-12.3281,-10.6506,-15.6311,-12.3281,-10.6506,-15.6311,-15.6311,-2.85936,-1.1974,-6.169,-6.169,-5.26591,-7.77041,-6.11036,-11.0744,-11.0744,-1.60832,-10.4723,-12.3281,-10.6506,-15.6311,-15.6311,-6.169,-11.0744,-15.6311,-6.1694,-4.50204,-9.47581,-9.47581,0,-4.91786,-9.47581,-8.87375 0|0:7:1,0,2,3,0,1,0,0:1:40:0,2,3,0,1,0,0:0,51,72,0,27,0,0:-4.50813,-4.80916,-8.12918,-1.36159,-4.69159,-4.08953,-0.0576919,-3.39267,0,-2.48958,-4.80916,-8.12918,-4.69159,-3.39267,-8.12918,-2.67139,-5.99706,-2.5603,-1.2672,-5.99706,-5.69603,-4.80916,-8.12918,-4.69159,-3.39267,-8.12918,-5.99706,-8.12918,-4.80916,-8.12918,-4.69159,-3.39267,-8.12918,-5.99706,-8.12918,-8.12918 dDocent_Contig_13581 14 . A G 39.1809 . AB=0.103448;ABP=42.621;AC=0;AF=0;AN=8;AO=3;CIGAR=1M1X8M;DP=60;DPB=56;DPRA=2.80645;EPP=9.52472;EPPR=111.584;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=1971;RO=50;RPL=0;RPP=9.52472;RPPR=111.584;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:24:24,0,0:24:945:0,0:0,0:0,-7.22472,-85.3587,-7.22472,-85.3587,-85.3587 0|0:29:19,5,3:19:749:5,3:143,122:-5.60949,0,-60.1541,-1.22706,-51.5928,-62.0305 0|0:6:6,0,0:6:237:0,0:0,0:0,-1.80618,-21.7035,-1.80618,-21.7035,-21.7035 0|0:1:1,0,0:1:40:0,0:0,0:0,-0.30103,-3.99568,-0.30103,-3.99568,-3.99568 dDocent_Contig_13582 9 . C T 234.147 . AB=0.269231;ABP=15.0369;AC=2;AF=0.25;AN=8;AO=8;CIGAR=4X4M1D3M3X1M;DP=49;DPB=47.25;DPRA=0;EPP=20.3821;EPPR=59.4686;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=6.93889e-18;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=306;QR=993;RO=26;RPL=0;RPP=20.3821;RPPR=59.4686;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:14:12,0,1,0:12:453:0,1,0:0,39,0:0,-3.61236,-40.8459,-0.266653,-37.6376,-37.3366,-3.61236,-40.8459,-37.6376,-40.8459 0|1:18:6,3,5,4:6:227:3,5,4:110,189,161:-13.6817,-6.50287,-24.2045,0,-9.61921,-17.0997,-2.20966,-11.8324,-5.32758,-19.6164 0|1:8:3,1,2,1:3:119:1,2,1:39,78,41:-5.54331,-3.22753,-12.7532,0,-6.62877,-9.24059,-3.04438,-9.66115,-6.44661,-12.5722 0|0:9:5,0,0,4:5:194:0,0,4:0,0,133:-9.58609,-11.0912,-27.0616,-11.0912,-27.0616,-27.0616,0,-16.3272,-16.3272,-15.1231 dDocent_Contig_13583 99 . N C 35.1819 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=9X7I2M;DP=2;DPB=3.27273;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=21.5;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=43;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. 1|1:2:0,2:0:0:2:43:-3.51698,-0.60206,0 .:.:.:.:.:.:.:. dDocent_Contig_13585 20 . A T 41.0467 . AB=0.4;ABP=3.44459;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X;DP=38;DPB=38;DPRA=0.454545;EPP=7.35324;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=77;QR=1451;RO=36;RPL=0;RPP=7.35324;RPPR=81.1833;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:8:8,0:8:320:0:0:0,-2.40824,-29.1673 0/0:24:24,0:24:972:0:0:0,-7.22472,-87.7782 0/0:1:1,0:1:40:0:0:0,-0.30103,-3.99568 0/1:5:3,2:3:119:2:77:-5.80305,0,-9.58986 dDocent_Contig_13586 22 . G T 332.84 . AB=0.238806;ABP=42.7126;AC=3;AF=0.375;AN=8;AO=16;CIGAR=2X;DP=72;DPB=72;DPRA=4.46667;EPP=37.7539;EPPR=120.27;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=639;QR=2148;RO=54;RPL=0;RPP=37.7539;RPPR=120.27;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:27:19,2,6:19:768:2,6:77,239:-13.9701,-13.3706,-76.0899,0,-57.0135,-61.5279 0|1:21:15,0,6:15:596:0,6:0,245:-16.1078,-20.6233,-69.6777,0,-49.4591,-47.6529 0|1:19:15,0,4:15:586:0,4:0,155:-8.6039,-13.1194,-61.2829,0,-48.5513,-47.3472 0|0:5:5,0,0:5:198:0,0:0,0:0,-1.50515,-18.1965,-1.50515,-18.1965,-18.1965 dDocent_Contig_13587 16 . T A 162.112 . AB=0.185185;ABP=26.2531;AC=3;AF=0.375;AN=8;AO=7;CIGAR=1X4M1X6M5D1X;DP=51;DPB=48.9444;DPRA=1.31818;EPP=18.2106;EPPR=92.0407;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.95122;PAO=0;PQA=0;PQR=0;PRO=0;QA=272;QR=1589;RO=41;RPL=0;RPP=18.2106;RPPR=92.0407;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:21:21,0,0:21:808:0,0:0,0:0,-6.32163,-73.0401,-6.32163,-73.0401,-73.0401 0|1:27:19,5,2:19:745:5,2:199,74:-10.6774,0,-59.7726,-10.3501,-55.2258,-71.0107 0|0:1:1,0,0:1:36:0,0:0,0:0,-0.30103,-3.59827,-0.30103,-3.59827,-3.59827 1|1:2:0,2,0:0:0:2,0:73,0:-6.93007,-0.60206,0,-6.93007,-0.60206,-6.93007 dDocent_Contig_13588 30 . G C 78.6738 . AB=0.428571;ABP=3.32051;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=27;DPB=27;DPRA=1.05;EPP=9.52472;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=956;RO=24;RPL=0;RPP=9.52472;RPPR=55.1256;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:7:4,3:4:152:3:122:-9.26528,0,-11.9404 0/0:6:6,0:6:242:0:0:0,-1.80618,-22.1569 0/0:8:8,0:8:317:0:0:0,-2.40824,-28.8929 0/0:6:6,0:6:245:0:0:0,-1.80618,-22.4295 dDocent_Contig_13589 27 . C T 150.4 . AB=0.333333;ABP=7.35324;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=41;DPB=41;DPRA=2.34783;EPP=16.0391;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=242;QR=1402;RO=35;RPL=0;RPP=16.0391;RPPR=79.0118;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:7:7,0:7:283:0:0:0,-2.10721,-25.8432 0/0:3:3,0:3:122:0:0:0,-0.90309,-11.3725 0/0:13:13,0:13:522:0:0:0,-3.91339,-47.3252 0/1:18:12,6:12:475:6:242:-16.7388,0,-37.677 dDocent_Contig_13590 15 . G T 314.279 . AB=0.264151;ABP=28.6173;AC=2;AF=0.25;AN=8;AO=14;CIGAR=1X;DP=70;DPB=70;DPRA=3.11765;EPP=33.4109;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=58.7143;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=556;QR=2192;RO=56;RPL=0;RPP=33.4109;RPPR=124.613;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:32:25,7:25:981:7:277:-15.6672,0,-78.8462 0/1:21:14,7:14:559:7:279:-19.1586,0,-44.3105 0/0:10:10,0:10:390:0:0:0,-3.0103,-35.4541 0/0:7:7,0:7:262:0:0:0,-2.10721,-23.8535 dDocent_Contig_13593 52 . G A 58.7976 . AB=0.153846;ABP=16.5402;AC=3;AF=0.5;AN=6;AO=3;CIGAR=1X;DP=21;DPB=21;DPRA=1;EPP=9.52472;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=117;QR=717;RO=18;RPL=3;RPP=9.52472;RPPR=42.0968;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:11,2:11:444:2:76:-3.30015,0,-36.4019 0/0:7:7,0:7:273:0:0:0,-2.10721,-24.9343 ./.:.:.:.:.:.:.:. 1/1:1:0,1:0:0:1:41:-4.09457,-0.30103,0 dDocent_Contig_13595 39 . A G 649.955 . AB=0.413793;ABP=6.75422;AC=2;AF=0.333333;AN=6;AO=24;CIGAR=1X3M1X;DP=70;DPB=70;DPRA=2.41667;EPP=55.1256;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=942;QR=1674;RO=43;RPL=0;RPP=55.1256;RPPR=96.3836;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:19:13,6,0:13:516:6,0:236,0:-15.8919,0,-41.068,-19.8053,-42.8742,-62.2855 0|1:39:18,18,3:18:693:18,3:706,122:-52.6265,0,-51.4562,-47.9797,-46.8085,-103.966 0|0:12:12,0,0:12:465:0,0:0,0:0,-3.61236,-42.1976,-3.61236,-42.1976,-42.1976 .:.:.:.:.:.:.:. dDocent_Contig_13597 31 . G C 1280.03 . AB=0.398305;ABP=13.61;AC=4;AF=0.5;AN=8;AO=47;CIGAR=2X1M1X;DP=118;DPB=118;DPRA=0;EPP=105.07;EPPR=157.185;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=0.957447;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1871;QR=2775;RO=71;RPL=0;RPP=105.07;RPPR=157.185;RPR=47;RUN=1;SAF=47;SAP=105.07;SAR=0;SRF=71;SRP=157.185;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:27:17,10:17:674:10:389:-27.2372,0,-52.8635 0|1:44:21,23:21:798:23:928:-70.58,0,-58.8924 0|1:25:13,12:13:514:12:475:-35.5753,0,-39.0822 0|1:22:20,2:20:789:2:79:-0.874972,0,-64.7098 dDocent_Contig_13599 22 . C T 418.58 . AB=0.26087;ABP=37.2818;AC=2;AF=0.25;AN=8;AO=19;CIGAR=1X;DP=98;DPB=98;DPRA=1.84444;EPP=44.2683;EPPR=174.557;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=753;QR=3177;RO=79;RPL=0;RPP=44.2683;RPPR=174.557;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=79;SRP=174.557;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:47:31,16:31:1258:16:634:-43.2486,0,-99.3369 0/1:22:20,2:20:813:2:78:-0.780641,0,-66.8615 0/0:14:13,1:13:528:1:41:0,-0.119853,-43.7714 0/0:15:15,0:15:578:0:0:0,-4.51545,-52.342 dDocent_Contig_13600 14 . T G 41.4962 . AB=0.333333;ABP=4.45795;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=32;DPB=32;DPRA=0.461538;EPP=7.35324;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.966667;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=1189;RO=30;RPL=0;RPP=7.35324;RPPR=68.1545;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:12:12,0:12:485:0:0:0,-3.61236,-44.0012 0/1:6:4,2:4:147:2:82:-5.9735,0,-11.7771 0/0:14:14,0:14:557:0:0:0,-4.21442,-50.4739 ./.:.:.:.:.:.:.:. dDocent_Contig_13601 123 . T G 113.329 . AB=0.174603;ABP=60.9507;AC=2;AF=0.25;AN=8;AO=11;CIGAR=1X;DP=72;DPB=72;DPRA=7;EPP=26.8965;EPPR=135.47;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=367;QR=2037;RO=61;RPL=0;RPP=26.8965;RPPR=135.47;RPR=11;RUN=1;SAF=0;SAP=26.8965;SAR=11;SRF=0;SRP=135.47;SRR=61;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:7:7,0:7:239:0:0:0,-2.10721,-21.844 0/1:52:43,9:43:1427:9:301:-11.7619,0,-113.064 0/1:11:9,2:9:301:2:66:-2.95685,0,-24.1041 0/0:2:2,0:2:70:0:0:0,-0.60206,-6.6474 dDocent_Contig_13602 10 . G A 521.179 . AB=0.468085;ABP=3.42611;AC=4;AF=0.5;AN=8;AO=22;CIGAR=1X;DP=47;DPB=47;DPRA=0;EPP=50.7827;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=783;QR=980;RO=25;RPL=0;RPP=50.7827;RPPR=57.2971;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:11,13:11:427:13:440:-32.6869,0,-31.5567 0/1:6:2,4:2:81:4:160:-12.9776,0,-5.87955 0/1:10:9,1:9:351:1:32:-0.189013,0,-28.9394 0/1:7:3,4:3:121:4:151:-11.8495,0,-9.17299 dDocent_Contig_13603 21 . G A 82.3566 . AB=0.25;ABP=13.8677;AC=2;AF=0.25;AN=8;AO=6;CIGAR=1X;DP=45;DPB=45;DPRA=1.0303;EPP=16.0391;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.923077;PAO=0;PQA=0;PQR=0;PRO=0;QA=230;QR=1466;RO=39;RPL=0;RPP=16.0391;RPPR=87.6977;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:14:13,1:13:484:1:41:0,-0.119853,-39.7956 0/1:7:6,1:6:217:1:40:-1.88847,0,-17.763 0/1:13:9,4:9:347:4:149:-9.85716,0,-27.6728 0/0:11:11,0:11:418:0:0:0,-3.31133,-37.9613 dDocent_Contig_13605 15 . A G 49.729 . AB=0.2;ABP=14.7363;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=100;DPB=100;DPRA=1.43902;EPP=16.0391;EPPR=207.129;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.5;PAIREDR=0.553191;PAO=0;PQA=0;PQR=0;PRO=0;QA=240;QR=3745;RO=94;RPL=0;RPP=16.0391;RPPR=207.129;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=94;SRP=207.129;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:44:41,3:41:1624:3:120:0,-2.05801,-135.205 0/0:18:18,0:18:721:0:0:0,-5.41854,-65.2165 0/0:23:23,0:23:916:0:0:0,-6.92369,-82.7455 0/1:15:12,3:12:484:3:120:-6.67186,0,-39.396 dDocent_Contig_13606 121 . A T 243.767 . AB=0.47619;ABP=3.1137;AC=3;AF=0.375;AN=8;AO=10;CIGAR=1X;DP=29;DPB=29;DPRA=0.875;EPP=24.725;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=388;QR=729;RO=19;RPL=0;RPP=24.725;RPPR=44.2683;RPR=10;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=44.2683;SRR=19;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:6,4:6:232:4:154:-11.2232,0,-18.2386 0/1:6:4,2:4:151:2:78:-5.59729,0,-12.1515 0/0:8:8,0:8:307:0:0:0,-2.40824,-27.9914 0/1:5:1,4:1:39:4:156:-12.9121,0,-2.39141 dDocent_Contig_13609 10 . C T 89.9639 . AB=0.444444;ABP=3.25157;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=103;DPB=103;DPRA=0.807018;EPP=13.8677;EPPR=213.643;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=184;QR=3721;RO=97;RPL=0;RPP=13.8677;RPPR=213.643;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=97;SRP=213.643;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:53:52,0:52:2004:0:0:0,-15.6536,-180.469 0/0:37:36,1:36:1372:1:39:0,-7.24155,-119.85 0/1:9:5,4:5:192:4:145:-10.6953,0,-14.9378 0/0:4:4,0:4:153:0:0:0,-1.20412,-14.1388 dDocent_Contig_13611 56 . G A 518.155 . AB=0.4;ABP=6.91895;AC=3;AF=0.375;AN=8;AO=18;CIGAR=1X3M;DP=51;DPB=51;DPRA=22.5;EPP=42.0968;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=720;QR=1159;RO=31;RPL=18;RPP=42.0968;RPPR=70.3259;RPR=0;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:25:20,0,5:20:740:0,5:0,199:-10.7626,-16.7832,-77.2884,0,-60.8972,-59.3921 0|1:20:7,0,13:7:263:0,13:0,521:-41.2145,-43.3217,-64.8575,0,-21.92,-18.0066 0|0:1:1,0,0:1:40:0,0:0,0:0,-0.30103,-3.99568,-0.30103,-3.99568,-3.99568 0|1:5:3,2,0:3:116:2,0:71,0:-5.23523,0,-9.31225,-6.13832,-9.91431,-15.6852 dDocent_Contig_13613 7 . G A 771.394 . AB=0.246154;ABP=39.3908;AC=1;AF=0.125;AN=8;AO=16;CIGAR=2X;DP=114;DPB=114;DPRA=2.70833;EPP=37.7539;EPPR=139.813;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=57.7778;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.904762;PAO=0;PQA=0;PQR=0;PRO=0;QA=616;QR=2040;RO=63;RPL=0;RPP=37.7539;RPPR=139.813;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=63;SRP=139.813;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:12:12,0,0:12:369:0,0:0,0:0,-3.61236,-33.501,-3.61236,-33.501,-33.501 0|0:37:31,0,4:31:999:0,4:0,138:-1.97892,-11.3109,-91.2856,0,-80.0744,-78.8703 0|0:42:17,11,13:17:559:11,13:425,448:-31.2536,-1.43817,-42.3129,0,-9.22928,-40.2518 1|0:23:3,5,15:3:113:5,15:191,536:-49.1878,-34.4128,-42.1707,-6.41743,0,-11.1598 dDocent_Contig_13614 23 . A G 374.495 . AB=0.194175;ABP=86.6858;AC=3;AF=0.375;AN=8;AO=24;CIGAR=8M1X;DP=153;DPB=149.889;DPRA=0;EPP=55.1256;EPPR=274.444;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=965;QR=4887;RO=125;RPL=0;RPP=55.1256;RPPR=274.444;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=125;SRP=274.444;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:50:46,0,4:46:1786:0,4:0,162:0,-13.8474,-160.578,-0.0845438,-147.218,-146.014 0|1:70:60,1,9:60:2361:1,9:34,366:-12.1874,-27.4978,-221.404,0,-191.514,-191.562 0|1:25:16,3,6:16:628:3,6:117,233:-14.3233,-9.52177,-60.2708,0,-42.0341,-49.845 0|1:8:3,0,5:3:112:0,5:0,204:-16.3358,-17.2389,-26.3956,0,-9.54264,-8.03749 dDocent_Contig_13615 85 . C T 48.3281 . AB=0.181818;ABP=22.3561;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1M1I3M1X;DP=50;DPB=51;DPRA=11.5;EPP=13.8677;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=173;QR=1503;RO=45;RPL=5;RPP=13.8677;RPPR=100.727;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:22:18,4:18:586:4:139:-6.23003,0,-46.4257 0|0:24:23,1:23:781:1:34:0,-3.82581,-67.2074 0|0:3:3,0:3:101:0:0:0,-0.90309,-9.42383 0|0:1:1,0:1:35:0:0:0,-0.30103,-3.49863 dDocent_Contig_13616 13 . A C 335.973 . AB=0.28;ABP=24.0302;AC=2;AF=0.25;AN=8;AO=14;CIGAR=1X;DP=64;DPB=64;DPRA=3.57143;EPP=33.4109;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.428571;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=569;QR=1964;RO=50;RPL=0;RPP=33.4109;RPPR=111.584;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:17,2:17:662:2:82:-2.06011,0,-54.189 0/1:31:19,12:19:752:12:487:-34.8495,0,-58.6678 0/0:10:10,0:10:394:0:0:0,-3.0103,-35.8183 0/0:4:4,0:4:156:0:0:0,-1.20412,-14.4157 dDocent_Contig_13617 66 . A G 45.9384 . AB=0.214286;ABP=12.937;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=30;DPB=30;DPRA=1.75;EPP=9.52472;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=114;QR=895;RO=27;RPL=3;RPP=9.52472;RPPR=61.6401;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:13:13,0:13:461:0:0:0,-3.91339,-41.8237 0/1:14:11,3:11:334:3:114:-6.41756,0,-26.1398 0/0:3:3,0:3:100:0:0:0,-0.90309,-9.3303 ./.:.:.:.:.:.:.:. dDocent_Contig_13618 57 . G A 142.221 . AB=0.195652;ABP=40.0197;AC=3;AF=0.5;AN=6;AO=9;CIGAR=1X;DP=46;DPB=46;DPRA=0;EPP=22.5536;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.648649;PAO=0;PQA=0;PQR=0;PRO=0;QA=349;QR=1410;RO=37;RPL=9;RPP=22.5536;RPPR=83.3548;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:6,4:6:238:4:155:-11.315,0,-18.7815 0/1:22:20,2:20:740:2:80:-0.969131,0,-60.2814 0/1:14:11,3:11:432:3:114:-6.41668,0,-35.0153 ./.:.:.:.:.:.:.:. dDocent_Contig_13619 28 . G T 168.673 . AB=0.219512;ABP=31.0276;AC=2;AF=0.25;AN=8;AO=9;CIGAR=1X;DP=54;DPB=54;DPRA=3.15385;EPP=22.5536;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=354;QR=1723;RO=45;RPL=0;RPP=22.5536;RPPR=100.727;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:22,5:22:864:5:202:-10.4341,0,-69.9403 0/1:14:10,4:10:345:4:152:-9.83113,0,-27.147 0/0:5:5,0:5:195:0:0:0,-1.50515,-17.9204 0/0:8:8,0:8:319:0:0:0,-2.40824,-29.0756 dDocent_Contig_13620 54 . A G 242.441 . AB=0.3;ABP=6.48466;AC=3;AF=0.375;AN=8;AO=8;CIGAR=1X;DP=21;DPB=21;DPRA=2.5;EPP=20.3821;EPPR=31.2394;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=310;QR=502;RO=13;RPL=8;RPP=20.3821;RPPR=31.2394;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=13;SRP=31.2394;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5,0:5:193:0:0:0,-1.50515,-17.7414 0/1:10:7,3:7:270:3:117:-7.90008,0,-21.6552 1/1:5:0,5:0:0:5:193:-17.7414,-1.50515,0 0/0:1:1,0:1:39:0:0:0,-0.30103,-3.89656 dDocent_Contig_13621 16 . C G 64.882 . AB=0.190476;ABP=20.4855;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=77;DPB=77;DPRA=1.75;EPP=13.8677;EPPR=159.356;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=0.2;PAIREDR=0.75;PAO=0;PQA=0;PQR=0;PRO=0;QA=198;QR=2818;RO=72;RPL=0;RPP=13.8677;RPPR=159.356;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=72;SRP=159.356;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:28:27,1:27:1046:1:41:0,-4.33427,-90.3361 0/1:21:17,4:17:665:4:157:-8.18717,0,-53.8616 0/0:16:16,0:16:633:0:0:0,-4.81648,-57.3046 0/0:12:12,0:12:474:0:0:0,-3.61236,-43.0113 dDocent_Contig_13622 29 . T C 289.576 . AB=0.458333;ABP=3.37221;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=53;DPB=53;DPRA=0.413793;EPP=26.8965;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=433;QR=1685;RO=42;RPL=0;RPP=26.8965;RPPR=94.2121;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:29:29,0:29:1156:0:0:0,-8.72987,-104.315 0/1:18:11,7:11:448:7:282:-20.3335,0,-35.2569 0/1:6:2,4:2:81:4:151:-12.147,0,-5.87955 ./.:.:.:.:.:.:.:. dDocent_Contig_13623 34 . C T 332.688 . AB=0.419355;ABP=4.76149;AC=2;AF=0.25;AN=8;AO=13;CIGAR=1X;DP=81;DPB=81;DPRA=0.62;EPP=31.2394;EPPR=150.67;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=503;QR=2624;RO=68;RPL=0;RPP=31.2394;RPPR=150.67;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=68;SRP=150.67;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:21:21,0:21:807:0:0:0,-6.32163,-72.945 0/0:29:29,0:29:1108:0:0:0,-8.72987,-100.008 0/1:22:13,9:13:509:9:348:-25.0534,0,-39.5328 0/1:9:5,4:5:200:4:155:-11.6134,0,-15.6703 dDocent_Contig_13625 7 . G A 134.486 . AB=0.210526;ABP=30.668;AC=2;AF=0.25;AN=8;AO=9;CIGAR=1X;DP=85;DPB=85;DPRA=1.01587;EPP=22.5536;EPPR=163.699;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.333333;PAIREDR=0.608108;PAO=0;PQA=0;PQR=0;PRO=0;QA=345;QR=2334;RO=74;RPL=0;RPP=22.5536;RPPR=163.699;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=74;SRP=163.699;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:26:24,1:24:799:1:39:0,-3.97399,-68.3474 0/0:21:20,0:20:574:0:0:0,-6.0206,-51.8088 0/1:17:14,3:14:447:3:117:-5.79287,0,-35.4101 0/1:21:16,5:16:514:5:189:-11.0536,0,-40.2367 dDocent_Contig_13626 16 . C A 240.651 . AB=0.025641;ABP=155.459;AC=3;AF=0.375;AN=8;AO=5;CIGAR=1M4D1M1X1M1X1M1X7M;DP=111;DPB=104.111;DPRA=0;EPP=13.8677;EPPR=148.499;GTI=0;LEN=1;MEANALT=4;MQM=11;MQMR=60;NS=4;NUMALT=6;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=55;QR=2611;RO=67;RPL=0;RPP=13.8677;RPPR=148.499;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=67;SRP=148.499;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:30:12,6,1,0,6,3,2:12:464:6,1,0,6,3,2:235,11,0,169,111,81:-15.6799,0,-36.3499,-18.8728,-37.7334,-56.7008,-19.2923,-38.1561,-57.0019,-57.4265,-7.27951,-26.1363,-44.981,-45.4022,-43.596,-10.2037,-29.0719,-47.9208,-48.3444,-36.3228,-47.4413,-12.6034,-31.4711,-50.3194,-50.7435,-38.7202,-41.6607,-50.1414 0|1:48:36,4,1,0,1,2,3:36:1399:4,1,0,1,2,3:152,11,0,33,75,116:-1.62103,0,-113.797,-12.0485,-114.574,-126.716,-12.4581,-115.001,-127.017,-127.444,-10.0644,-112.605,-124.62,-125.048,-124.747,-6.30963,-108.858,-120.874,-121.301,-118.905,-120.699,-2.91872,-105.474,-117.49,-117.917,-115.52,-111.774,-117.014 0|1:24:13,5,0,3,0,3,0:13:517:5,0,3,0,3,0:191,0,116,0,100,0:-11.7394,0,-41.0888,-15.6528,-42.5939,-58.2362,-6.11824,-33.0655,-48.7077,-47.8046,-15.6528,-42.5939,-58.2362,-48.7077,-58.2362,-7.57355,-34.5109,-50.1506,-40.6233,-50.1506,-49.2476,-15.6528,-42.5939,-58.2362,-48.7077,-58.2362,-50.1506,-58.2362 0|0:9:6,0,3,0,0,0,0:6:231:0,3,0,0,0,0:0,33,0,0,0,0:0,-1.80618,-20.9742,-0.422873,-19.7735,-18.8705,-1.80618,-20.9742,-19.7735,-20.9742,-1.80618,-20.9742,-19.7735,-20.9742,-20.9742,-1.80618,-20.9742,-19.7735,-20.9742,-20.9742,-20.9742,-1.80618,-20.9742,-19.7735,-20.9742,-20.9742,-20.9742,-20.9742 dDocent_Contig_13627 127 . T C 43.36 . AB=0.151515;ABP=37.8197;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=53;DPB=53;DPRA=3.3;EPP=13.8677;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=175;QR=1572;RO=48;RPL=0;RPP=13.8677;RPPR=107.241;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=107.241;SRR=48;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 0/0:3:3,0:3:105:0:0:0,-0.90309,-9.79616 0/1:33:28,5:28:943:5:175:-6.1597,0,-75.2443 0/0:17:17,0:17:524:0:0:0,-5.11751,-47.4556 dDocent_Contig_13628 39 . G A 635.304 . AB=0.511628;ABP=3.0608;AC=2;AF=0.333333;AN=6;AO=22;CIGAR=1X;DP=49;DPB=49;DPRA=3.58333;EPP=50.7827;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=58.2222;NS=3;NUMALT=1;ODDS=0;PAIRED=0.590909;PAIREDR=0.814815;PAO=0;PQA=0;PQR=0;PRO=0;QA=881;QR=1079;RO=27;RPL=0;RPP=50.7827;RPPR=61.6401;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:11,6:11:440:6:239:-16.7675,0,-34.8363 0/1:26:10,16:10:404:16:642:-50.2858,0,-26.5288 0/0:6:6,0:6:235:0:0:0,-1.80618,-21.519 ./.:.:.:.:.:.:.:. dDocent_Contig_13629 189 . A G 288.175 . AB=0.419355;ABP=4.76149;AC=2;AF=0.25;AN=8;AO=13;CIGAR=1X1M4I1M;DP=37;DPB=54.3333;DPRA=5.16667;EPP=31.2394;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=454;QR=960;RO=24;RPL=13;RPP=31.2394;RPPR=55.1256;RPR=0;RUN=1;SAF=0;SAP=31.2394;SAR=13;SRF=0;SRP=55.1256;SRR=24;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:24:13,11:13:526:11:383:-27.5797,0,-40.4626 0|1:7:5,2:5:198:2:71:-4.63485,0,-16.0886 0|0:5:5,0:5:196:0:0:0,-1.50515,-18.0131 0|0:1:1,0:1:40:0:0:0,-0.30103,-3.99568 dDocent_Contig_13630 98 . N A 156.226 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=5;CIGAR=1X;DP=5;DPB=5;DPRA=0;EPP=13.8677;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=163;QR=0;RO=0;RPL=5;RPP=13.8677;RPPR=0;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:4:0,4:0:0:4:130:-12.0211,-1.20412,0 ./.:.:.:.:.:.:.:. 1/1:1:0,1:0:0:1:33:-3.29913,-0.30103,0 ./.:.:.:.:.:.:.:. dDocent_Contig_13631 1 . N G 9350.02 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=303;CIGAR=1X;DP=303;DPB=303;DPRA=0;EPP=560.864;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=4;NUMALT=1;ODDS=3.38813e-21;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=10371;QR=0;RO=0;RPL=0;RPP=660.966;RPPR=0;RPR=303;RUN=1;SAF=12;SAP=560.864;SAR=291;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:105:0,105:0:0:105:3598:-324.033,-31.6082,0 1/1:71:0,71:0:0:71:2431:-219.048,-21.3731,0 1/1:99:0,99:0:0:99:3382:-304.608,-29.802,0 1/1:28:0,28:0:0:28:960:-86.7112,-8.42884,0 dDocent_Contig_13632 27 . G C 104.411 . AB=0.4;ABP=3.87889;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=21;DPB=21;DPRA=2.72727;EPP=11.6962;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.882353;PAO=0;PQA=0;PQR=0;PRO=0;QA=164;QR=689;RO=17;RPL=0;RPP=11.6962;RPPR=39.9253;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:2:2,0:2:81:0:0:0,-0.60206,-7.68573 0/0:6:6,0:6:239:0:0:0,-1.80618,-21.8837 0/1:10:6,4:6:246:4:164:-12.1396,0,-19.5098 0/0:3:3,0:3:123:0:0:0,-0.90309,-11.4648 dDocent_Contig_13635 11 . T A 210.175 . AB=0.272727;ABP=22.751;AC=3;AF=0.375;AN=8;AO=12;CIGAR=2X;DP=71;DPB=71;DPRA=0.54321;EPP=29.068;EPPR=131.127;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=429;QR=2344;RO=59;RPL=0;RPP=29.068;RPPR=131.127;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=59;SRP=131.127;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:27:27,0:27:1063:0:0:0,-8.12781,-95.9597 0|1:15:11,4:11:448:4:147:-9.07443,0,-36.1605 0|1:17:14,3:14:552:3:104:-4.58501,0,-44.9049 0|1:12:7,5:7:281:5:178:-12.7558,0,-22.0496 dDocent_Contig_13638 7 . C A 434.509 . AB=0.26;ABP=28.0257;AC=0;AF=0;AN=8;AO=13;CIGAR=1M1X1M1X1M;DP=83;DPB=71.6;DPRA=1.38889;EPP=31.2394;EPPR=113.755;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=1.38778e-17;PAIRED=1;PAIREDR=0.941176;PAO=0;PQA=0;PQR=0;PRO=0;QA=485;QR=1948;RO=51;RPL=0;RPP=31.2394;RPPR=113.755;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:37:13,12,12:13:499:12,12:446,446:-32.5859,-0.00204995,-37.3568,0,-4.47574,-37.3548 0|0:18:18,0,0:18:689:0,0:0,0:0,-5.41854,-62.344,-5.41854,-62.344,-62.344 0|0:13:9,1,3:9:341:1,3:39,112:-6.44843,-5.94767,-33.6089,0,-24.7411,-27.045 0|0:15:11,0,4:11:419:0,4:0,154:-9.71801,-13.0293,-47.3952,0,-34.7495,-33.5454 dDocent_Contig_13639 7 . C A 112.117 . AB=0;ABP=0;AC=2;AF=0.25;AN=8;AO=3;CIGAR=1X;DP=28;DPB=28;DPRA=0.36;EPP=9.52472;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.92;PAO=0;PQA=0;PQR=0;PRO=0;QA=117;QR=970;RO=25;RPL=0;RPP=9.52472;RPPR=57.2971;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:117:-10.9104,-0.90309,0 0/0:8:8,0:8:310:0:0:0,-2.40824,-28.2636 0/0:14:14,0:14:543:0:0:0,-4.21442,-49.216 0/0:3:3,0:3:117:0:0:0,-0.90309,-10.9104 dDocent_Contig_13640 56 . C T 169.808 . AB=0.269231;ABP=15.0369;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=58;DPB=58;DPRA=6.25;EPP=20.3821;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.125;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=327;QR=1966;RO=50;RPL=8;RPP=20.3821;RPPR=111.584;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:19,7:19:765:7:287:-18.3784,0,-61.3442 0/0:24:23,1:23:897:1:40:0,-3.22904,-77.0396 0/0:6:6,0:6:226:0:0:0,-1.80618,-20.699 0/0:2:2,0:2:78:0:0:0,-0.60206,-7.4033 dDocent_Contig_13641 53 . G A 129.976 . AB=0.21875;ABP=24.9965;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=43;DPB=43;DPRA=1.45455;EPP=18.2106;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=282;QR=1447;RO=36;RPL=7;RPP=18.2106;RPPR=81.1833;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:12,3:12:476:3:119:-6.57956,0,-38.6731 0/1:17:13,4:13:527:4:163:-9.94092,0,-42.6592 0/0:11:11,0:11:444:0:0:0,-3.31133,-40.3156 ./.:.:.:.:.:.:.:. dDocent_Contig_13642 107 . N A 392.39 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=13;CIGAR=1X;DP=13;DPB=13;DPRA=0;EPP=31.2394;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=58.6154;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=415;QR=0;RO=0;RPL=0;RPP=31.2394;RPPR=0;RPR=13;RUN=1;SAF=0;SAP=31.2394;SAR=13;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1:0,1:0:0:1:35:-3.49783,-0.30103,0 1/1:2:0,2:0:0:2:62:-5.88773,-0.60206,0 1/1:8:0,8:0:0:8:253:-23.078,-2.40824,0 1/1:2:0,2:0:0:2:65:-6.17229,-0.60206,0 dDocent_Contig_13643 56 . C T 30.5973 . AB=0.222222;ABP=9.04217;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=20;DPB=20;DPRA=1.63636;EPP=7.35324;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=80;QR=714;RO=18;RPL=2;RPP=7.35324;RPPR=42.0968;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:10:10,0:10:393:0:0:0,-3.0103,-35.7251 0/1:9:7,2:7:280:2:80:-4.88252,0,-22.8619 ./.:.:.:.:.:.:.:. 0/0:1:1,0:1:41:0:0:0,-0.30103,-4.09457 dDocent_Contig_13644 172 . C G 236.86 . AB=0.454545;ABP=3.20771;AC=3;AF=0.375;AN=8;AO=8;CIGAR=1X3M1X;DP=27;DPB=27;DPRA=1.25;EPP=20.3821;EPPR=39.9253;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=312;QR=678;RO=17;RPL=8;RPP=20.3821;RPPR=39.9253;RPR=0;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=39.9253;SRR=17;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:11:11,0:11:438:0:0:0,-3.31133,-39.7758 0|1:11:5,5:5:199:5:192:-14.2502,0,-14.8862 1|1:4:0,3:0:0:3:120:-10.8331,-0.90309,0 0|0:1:1,0:1:41:0:0:0,-0.30103,-4.09457 dDocent_Contig_13646 84 . G T 223.271 . AB=0.177215;ABP=74.504;AC=2;AF=0.25;AN=8;AO=14;CIGAR=1X;DP=97;DPB=97;DPRA=4.38889;EPP=33.4109;EPPR=183.243;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=542;QR=3179;RO=83;RPL=14;RPP=33.4109;RPPR=183.243;RPR=0;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=83;SRP=183.243;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:38:33,5:33:1274:5:195:-6.48506,0,-103.502 0/1:41:32,9:32:1208:9:347:-19.2399,0,-96.6712 0/0:14:14,0:14:542:0:0:0,-4.21442,-49.123 0/0:4:4,0:4:155:0:0:0,-1.20412,-14.3254 dDocent_Contig_13647 15 . T C 300.177 . AB=0;ABP=0;AC=2;AF=0.25;AN=8;AO=7;CIGAR=5M1I3M1X2M;DP=24;DPB=24.9091;DPRA=1.07692;EPP=18.2106;EPPR=33.4109;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=281;QR=553;RO=14;RPL=0;RPP=18.2106;RPPR=33.4109;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=14;SRP=33.4109;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:4:1,0,2:1:39:0,2:0,74:-5.72612,-6.02715,-9.23469,0,-3.19598,-2.59392 1|1:7:0,7,0:0:0:7,0:281,0:-25.6626,-2.10721,0,-25.6626,-2.10721,-25.6626 0|0:6:6,0,0:6:238:0,0:0,0:0,-1.80618,-21.7944,-1.80618,-21.7944,-21.7944 0|0:7:7,0,0:7:276:0,0:0,0:0,-2.10721,-25.2097,-2.10721,-25.2097,-25.2097 dDocent_Contig_13648 42 . A G 69.8798 . AB=0.333333;ABP=5.18177;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=34;DPB=34;DPRA=1;EPP=11.6962;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.5;PAIREDR=0.766667;PAO=0;PQA=0;PQR=0;PRO=0;QA=141;QR=1206;RO=30;RPL=0;RPP=11.6962;RPPR=68.1545;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:6,3:6:242:3:119:-8.38523,0,-19.4481 0/0:11:11,0:11:440:0:0:0,-3.31133,-39.9551 0/0:8:7,1:7:281:1:22:0,-0.208308,-23.462 0/0:6:6,0:6:243:0:0:0,-1.80618,-22.2482 dDocent_Contig_13649 45 . C T 93.9578 . AB=0.25;ABP=16.0391;AC=4;AF=0.5;AN=8;AO=6;CIGAR=1X;DP=24;DPB=24;DPRA=0;EPP=16.0391;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=241;QR=700;RO=18;RPL=0;RPP=16.0391;RPPR=42.0968;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:7:5,2:5:202:2:81:-5.57852,0,-16.4549 0/1:9:8,1:8:321:1:40:-1.28641,0,-26.5486 0/1:4:2,2:2:67:2:81:-6.48161,0,-5.15555 0/1:4:3,1:3:110:1:39:-2.69244,0,-9.05506 dDocent_Contig_13650 55 . T A 171.212 . AB=0.538462;ABP=3.17734;AC=2;AF=0.25;AN=8;AO=7;CIGAR=1X;DP=35;DPB=35;DPRA=0.590909;EPP=18.2106;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.892857;PAO=0;PQA=0;PQR=0;PRO=0;QA=263;QR=1066;RO=28;RPL=7;RPP=18.2106;RPPR=63.8115;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:12:12,0:12:466:0:0:0,-3.61236,-42.292 0/1:11:5,6:5:183:6:224:-17.2085,0,-13.5141 0/0:10:10,0:10:381:0:0:0,-3.0103,-34.6446 0/1:2:1,1:1:36:1:39:-3.2945,0,-2.99621 dDocent_Contig_13651 8 . T A 769.668 . AB=0.217391;ABP=130.655;AC=4;AF=0.5;AN=8;AO=40;CIGAR=1X;DP=184;DPB=184;DPRA=0;EPP=89.8692;EPPR=315.702;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.1736;NS=4;NUMALT=1;ODDS=0;PAIRED=0.9;PAIREDR=0.798611;PAO=0;PQA=0;PQR=0;PRO=0;QA=1537;QR=5550;RO=144;RPL=0;RPP=89.8692;RPPR=315.702;RPR=40;RUN=1;SAF=40;SAP=89.8692;SAR=0;SRF=144;SRP=315.702;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:63:55,8:55:2110:8:306:-8.93557,0,-170.848 0/1:52:41,11:41:1585:11:427:-23.1314,0,-126.011 0/1:50:40,10:40:1544:10:383:-19.7742,0,-124.18 0/1:19:8,11:8:311:11:421:-32.5235,0,-22.0721 dDocent_Contig_13652 39 . T G 279.336 . AB=0.3;ABP=16.9077;AC=1;AF=0.125;AN=8;AO=12;CIGAR=1X;DP=74;DPB=74;DPRA=3.52941;EPP=29.068;EPPR=137.642;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=456;QR=2466;RO=62;RPL=0;RPP=29.068;RPPR=137.642;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:40:28,12:28:1110:12:456:-29.3315,0,-88.1368 0/0:24:24,0:24:948:0:0:0,-7.22472,-85.6197 0/0:6:6,0:6:244:0:0:0,-1.80618,-22.3388 0/0:4:4,0:4:164:0:0:0,-1.20412,-15.1499 dDocent_Contig_13654 10 . T G 54.5924 . AB=0.2;ABP=14.7363;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=48;DPB=48;DPRA=1.36364;EPP=9.52472;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=1812;RO=45;RPL=0;RPP=9.52472;RPPR=100.727;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:12,3:12:488:3:122:-6.85704,0,-39.756 0/0:14:14,0:14:568:0:0:0,-4.21442,-51.4626 0/0:16:16,0:16:645:0:0:0,-4.81648,-58.3813 0/0:3:3,0:3:111:0:0:0,-0.90309,-10.3495 dDocent_Contig_13655 12 . C T 423.171 . AB=0.179856;ABP=126.753;AC=3;AF=0.375;AN=8;AO=26;CIGAR=1X;DP=188;DPB=188;DPRA=0;EPP=59.4686;EPPR=354.789;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=0.993827;PAO=0;PQA=0;PQR=0;PRO=0;QA=1022;QR=6510;RO=162;RPL=0;RPP=59.4686;RPPR=354.789;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=162;SRP=354.789;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:49:48,1:48:1924:1:39:0,-10.8539,-169.464 0/1:50:44,6:44:1782:6:228:-5.83268,0,-145.538 0/1:59:46,13:46:1856:13:514:-28.8468,0,-149.482 0/1:30:24,6:24:948:6:241:-13.0356,0,-76.5883 dDocent_Contig_13656 13 . C T 1151.13 . AB=0.284024;ABP=71.4824;AC=4;AF=0.5;AN=8;AO=48;CIGAR=1X;DP=169;DPB=169;DPRA=0;EPP=107.241;EPPR=265.758;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1911;QR=4837;RO=121;RPL=0;RPP=107.241;RPPR=265.758;RPR=48;RUN=1;SAF=48;SAP=107.241;SAR=0;SRF=121;SRP=265.758;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:39:27,12:27:1064:12:478:-31.6297,0,-84.2972 0/1:64:52,12:52:2072:12:469:-23.2904,0,-167.393 0/1:51:31,20:31:1253:20:804:-57.3224,0,-97.6815 0/1:15:11,4:11:448:4:160:-10.268,0,-36.1605 dDocent_Contig_13657 107 . N C 239.555 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=8;CIGAR=1X;DP=8;DPB=8;DPRA=0;EPP=20.3821;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=256;QR=0;RO=0;RPL=0;RPP=20.3821;RPPR=0;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:6:0,6:0:0:6:198:-18.1452,-1.80618,0 ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:58:-5.50862,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_13659 23 . A C 1380.84 . AB=0.360656;ABP=13.2981;AC=5;AF=0.625;AN=8;AO=47;CIGAR=2M1X;DP=88;DPB=88;DPRA=0;EPP=105.07;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1866;QR=1640;RO=41;RPL=0;RPP=105.07;RPPR=92.0407;RPR=47;RUN=1;SAF=47;SAP=105.07;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:30:15,15:15:601:15:583:-43.7652,0,-45.3979 1|1:27:2,25:2:79:25:996:-82.4334,-0.630179,0 0|1:18:15,3:15:603:3:123:-6.04625,0,-49.1905 0|1:13:9,4:9:357:4:164:-11.2365,0,-28.5795 dDocent_Contig_13661 3 . A T 348.854 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=15;CIGAR=4I1X1M1X3M1X;DP=15;DPB=27.7143;DPRA=0;EPP=35.5824;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=27.4667;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=0.266667;PAIREDR=0;PAO=29;PQA=1065;PQR=0;PRO=0;QA=526;QR=0;RO=0;RPL=0;RPP=35.5824;RPPR=0;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:7:0,7:0:0:7:250:-14.1572,-2.10721,0 1|1:1:0,1:0:0:1:36:-2.04385,-0.30103,0 1|1:6:0,6:0:0:6:209:-16.0846,-1.80618,0 1|1:1:0,1:0:0:1:31:-1.99446,-0.30103,0 dDocent_Contig_13662 7 . C A 1514.12 . AB=0.486957;ABP=3.18024;AC=4;AF=0.5;AN=8;AO=56;CIGAR=1X;DP=115;DPB=115;DPRA=0;EPP=124.613;EPPR=131.127;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=0.696429;PAIREDR=0.949153;PAO=0;PQA=0;PQR=0;PRO=0;QA=2134;QR=2269;RO=59;RPL=0;RPP=124.613;RPPR=131.127;RPR=56;RUN=1;SAF=56;SAP=124.613;SAR=0;SRF=59;SRP=131.127;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:11,16:11:425:16:614:-47.4711,0,-30.4766 0/1:38:27,11:27:1040:11:410:-25.8073,0,-82.4683 0/1:36:17,19:17:657:19:735:-55.6442,0,-48.6296 0/1:14:4,10:4:147:10:375:-29.8873,0,-9.37408 dDocent_Contig_13663 80 . G T 77.6922 . AB=0.285714;ABP=8.59409;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=27;DPB=27;DPRA=3.23077;EPP=11.6962;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.913043;PAO=0;PQA=0;PQR=0;PRO=0;QA=148;QR=831;RO=23;RPL=4;RPP=11.6962;RPPR=52.9542;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:4:4,0:4:145:0:0:0,-1.20412,-13.4055 0/1:14:10,4:10:358:4:148:-9.46755,0,-28.3474 0/0:8:8,0:8:292:0:0:0,-2.40824,-26.6306 0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827 dDocent_Contig_13664 9 . T A 4531.41 . AB=0.0923077;ABP=190.692;AC=6;AF=0.75;AN=8;AO=12;CIGAR=1X4M;DP=269;DPB=269;DPRA=0;EPP=29.068;EPPR=120.27;GTI=0;LEN=1;MEANALT=4;MQM=54.6667;MQMR=36.9259;NS=4;NUMALT=4;ODDS=0;PAIRED=0;PAIREDR=0.944444;PAO=0;PQA=0;PQR=0;PRO=0;QA=459;QR=2121;RO=54;RPL=0;RPP=29.068;RPPR=120.27;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:64:4,7,5,48,0:4:160:7,5,48,0:276,198,1850,0:-152.172,-134.903,-137.603,-137.357,-123.689,-140.66,-13.7186,0,-2.43883,-4.04393,-153.376,-139.71,-142.165,-18.4934,-158.186 0|1:103:20,5,8,61,9:20:789:5,8,61,9:197,318,2396,344:-166.294,-158.827,-200.558,-146.3,-176.048,-187.129,0,-29.7147,-17.178,-24.8418,-144.15,-173.898,-161.37,-15.0281,-184.677 1|1:75:19,4,14,38,0:19:753:4,14,38,0:157,552,1472,0:-117.567,-110.487,-148.941,-78.0897,-104.942,-113.53,-5.60779,-32.4264,0,-33.7938,-123.286,-150.145,-117.744,-45.2329,-162.947 0|1:27:11,2,1,10,3:11:419:2,1,10,3:76,39,391,115:-24.504,-22.3871,-42.527,-24.6192,-39.9319,-45.064,0,-15.2737,-17.5107,-17.7004,-18.412,-33.7222,-35.9585,-11.294,-38.2531 dDocent_Contig_13665 8 . T A 1913.56 . AB=0.448718;ABP=6.57374;AC=4;AF=0.5;AN=8;AO=70;CIGAR=1X2M;DP=156;DPB=156;DPRA=0;EPP=155.013;EPPR=174.557;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.857143;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2696;QR=3021;RO=79;RPL=0;RPP=155.013;RPPR=174.557;RPR=70;RUN=1;SAF=70;SAP=155.013;SAR=0;SRF=79;SRP=174.557;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:52:24,7,21:24:920:7,21:257,805:-58.857,-45.0785,-118.479,0,-54.517,-69.199 0|1:57:34,0,23:34:1304:0,23:0,891:-63.3508,-73.5858,-180.614,0,-107.414,-100.491 0|1:25:15,0,10:15:572:0,10:0,382:-27.2093,-31.7247,-78.6496,0,-47.3063,-44.296 0|1:22:6,0,16:6:225:0,16:0,618:-49.3369,-51.1431,-69.5695,0,-18.8042,-13.9877 dDocent_Contig_13666 27 . A G 793.082 . AB=0.0857143;ABP=55.1877;AC=0;AF=0;AN=8;AO=3;CIGAR=2X1M1X3M1X;DP=146;DPB=146;DPRA=0;EPP=9.52472;EPPR=183.243;GTI=0;LEN=1;MEANALT=3;MQM=9;MQMR=60;NS=4;NUMALT=4;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=101;QR=3277;RO=83;RPL=0;RPP=9.52472;RPPR=183.243;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=83;SRP=183.243;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:38:16,1,4,0,17:16:631:1,4,0,17:39,88,0,658:-49.3903,-53.0784,-104.713,-48.5951,-99.3903,-99.3165,-54.2068,-105.014,-100.521,-106.145,0,-50.9481,-46.467,-52.076,-46.9585 0|0:63:51,2,4,0,6:51:2016:2,4,0,6:68,91,0,214:-2.18062,-15.8283,-181.211,-11.6552,-175.914,-176.433,-17.5331,-181.813,-177.637,-183.537,0,-164.373,-160.197,-166.096,-164.29 0|0:35:12,1,19,3,0:12:471:1,19,3,0:35,448,101,0:-26.4345,-29.7237,-68.2303,0,-38.6555,-33.248,-28.538,-67.0247,-37.4962,-66.4435,-30.0468,-68.5313,-38.9676,-67.3466,-68.8543 0|0:10:4,3,0,0,3:4:159:3,0,0,3:95,0,0,118:-8.63447,-7.38704,-19.5774,-9.83859,-20.4805,-22.9841,-9.83859,-20.4805,-22.9841,-22.9841,0,-10.7756,-13.2442,-13.2442,-12.3412 dDocent_Contig_13667 10 . T C 208.721 . AB=0.232558;ABP=29.7245;AC=2;AF=0.25;AN=8;AO=11;CIGAR=1X;DP=61;DPB=61;DPRA=4.75;EPP=26.8965;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=446;QR=2030;RO=50;RPL=0;RPP=26.8965;RPPR=111.584;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:13,5:13:532:5:205:-13.4165,0,-42.8076 0/1:25:20,5:20:808:5:200:-10.8527,0,-65.5099 0/0:14:13,1:13:527:1:41:0,-0.119853,-43.6811 0/0:4:4,0:4:163:0:0:0,-1.20412,-15.0584 dDocent_Contig_13668 10 . T C 141.072 . AB=0.545455;ABP=3.20771;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=40;DPB=40;DPRA=0.758621;EPP=16.0391;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=210;QR=1364;RO=34;RPL=0;RPP=16.0391;RPPR=76.8404;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:14:14,0:14:563:0:0:0,-4.21442,-51.0103 0/0:15:15,0:15:598:0:0:0,-4.51545,-54.1576 0/1:11:5,6:5:203:6:210:-15.9311,0,-15.3417 ./.:.:.:.:.:.:.:. dDocent_Contig_13669 7 . C T 35.0181 . AB=0.116279;ABP=58.0041;AC=1;AF=0.125;AN=8;AO=10;CIGAR=1X;DP=166;DPB=166;DPRA=1.97222;EPP=24.725;EPPR=339.589;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.4;PAIREDR=0.335484;PAO=0;PQA=0;PQR=0;PRO=0;QA=390;QR=5992;RO=155;RPL=0;RPP=24.725;RPPR=339.589;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=155;SRP=339.589;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:43:37,5:37:1440:5:195:-4.89955,0,-116.853 0/0:47:46,1:46:1782:1:39:0,-10.2518,-156.735 0/0:52:48,4:48:1859:4:156:0,-1.23627,-153.138 0/0:24:24,0:24:911:0:0:0,-7.22472,-82.3006 dDocent_Contig_13670 21 . T G 352.442 . AB=0.382353;ABP=7.09778;AC=1;AF=0.125;AN=8;AO=14;CIGAR=1X2M1X;DP=76;DPB=76;DPRA=2.45455;EPP=33.4109;EPPR=137.642;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=558;QR=2462;RO=62;RPL=0;RPP=33.4109;RPPR=137.642;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:34:21,13:21:818:13:517:-36.6421,0,-63.6998 0|0:20:19,1:19:759:1:41:0,-1.92603,-64.5365 0|0:16:16,0:16:647:0:0:0,-4.81648,-58.5634 0|0:6:6,0:6:238:0:0:0,-1.80618,-21.7938 dDocent_Contig_13671 35 . A C 167.373 . AB=0.158537;ABP=86.0559;AC=4;AF=0.5;AN=8;AO=13;CIGAR=1X;DP=82;DPB=82;DPRA=0;EPP=31.2394;EPPR=152.842;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=0.695652;PAO=0;PQA=0;PQR=0;PRO=0;QA=525;QR=2750;RO=69;RPL=0;RPP=31.2394;RPPR=152.842;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=69;SRP=152.842;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:23,4:23:918:4:163:-6.93062,0,-74.7988 0/1:36:31,5:31:1227:5:201:-7.6336,0,-99.8599 0/1:15:12,3:12:482:3:122:-6.85704,0,-39.2154 0/1:4:3,1:3:123:1:39:-2.69244,0,-10.2607 dDocent_Contig_13672 153 . T A 503.164 . AB=0.485714;ABP=3.07234;AC=5;AF=0.625;AN=8;AO=21;CIGAR=1X;DP=39;DPB=39;DPRA=0;EPP=48.6112;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=721;QR=637;RO=18;RPL=0;RPP=48.6112;RPPR=42.0968;RPR=21;RUN=1;SAF=0;SAP=48.6112;SAR=21;SRF=0;SRP=42.0968;SRR=18;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:9,2:9:313:2:70:-3.33607,0,-25.1945 1/1:4:0,4:0:0:4:137:-12.6682,-1.20412,0 0/1:10:2,8:2:72:8:278:-22.3477,0,-3.82642 0/1:14:7,7:7:252:7:236:-17.3558,0,-18.8145 dDocent_Contig_13673 10 . T A 2131.34 . AB=0.554455;ABP=5.61177;AC=5;AF=0.625;AN=8;AO=74;CIGAR=1X;DP=120;DPB=120;DPRA=0;EPP=163.699;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=45.8378;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.369565;PAO=0;PQA=0;PQR=0;PRO=0;QA=2988;QR=1830;RO=46;RPL=0;RPP=163.699;RPPR=102.898;RPR=74;RUN=1;SAF=74;SAP=163.699;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:44:16,28:16:649:28:1138:-79.6613,0,-45.4978 0/1:50:28,22:28:1099:22:888:-60.7353,0,-84.1454 1/1:19:1,18:1:41:18:725:-58.8561,-1.625,0 0/1:7:1,6:1:41:6:237:-19.1724,0,-1.98736 dDocent_Contig_13674 30 . A C 388.782 . AB=0.4;ABP=6.48466;AC=3;AF=0.5;AN=6;AO=16;CIGAR=1X;DP=40;DPB=40;DPRA=0;EPP=37.7539;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=45.4375;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=630;QR=959;RO=24;RPL=0;RPP=37.7539;RPPR=55.1256;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:8:5,3:5:204:3:122:-8.5954,0,-16.3358 0/1:24:12,12:12:474:12:467:-33.7575,0,-35.7793 0/1:8:7,1:7:281:1:41:-1.54623,0,-23.2541 ./.:.:.:.:.:.:.:. dDocent_Contig_13675 36 . G T 662.077 . AB=0.329114;ABP=23.0483;AC=2;AF=0.25;AN=8;AO=27;CIGAR=1X;DP=103;DPB=103;DPRA=5.38889;EPP=61.6401;EPPR=168.042;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1071;QR=3009;RO=76;RPL=0;RPP=61.6401;RPPR=168.042;RPR=27;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=76;SRP=168.042;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:49:32,17:32:1252:17:678:-46.5986,0,-98.2128 0/1:30:21,9:21:834:9:352:-23.007,0,-66.3457 0/0:18:17,1:17:683:1:41:0,-1.32397,-57.7066 0/0:6:6,0:6:240:0:0:0,-1.80618,-21.976 dDocent_Contig_13676 113 . G A 348.055 . AB=0.222222;ABP=9.04217;AC=3;AF=0.5;AN=6;AO=12;CIGAR=1X;DP=30;DPB=30;DPRA=0.863636;EPP=29.068;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=426;QR=612;RO=18;RPL=0;RPP=29.068;RPPR=42.0968;RPR=12;RUN=1;SAF=0;SAP=29.068;SAR=12;SRF=0;SRP=42.0968;SRR=18;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 0/0:11:11,0:11:364:0:0:0,-3.31133,-33.0761 1/1:10:0,10:0:0:10:354:-32.1998,-3.0103,0 0/1:9:7,2:7:248:2:72:-4.12745,0,-19.9549 dDocent_Contig_13677 71 . T C 52.5066 . AB=0.1875;ABP=16.582;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=32;DPB=32;DPRA=3;EPP=9.52472;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=123;QR=1116;RO=29;RPL=3;RPP=9.52472;RPPR=65.983;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:13,3:13:487:3:123:-6.64831,0,-39.347 0/0:8:8,0:8:323:0:0:0,-2.40824,-29.4386 0/0:6:6,0:6:228:0:0:0,-1.80618,-20.8818 0/0:2:2,0:2:78:0:0:0,-0.60206,-7.4033 dDocent_Contig_13678 174 . T G 620.989 . AB=0.0625;ABP=82.8119;AC=3;AF=0.375;AN=8;AO=3;CIGAR=1X2M;DP=64;DPB=64;DPRA=12;EPP=9.52472;EPPR=72.4974;GTI=0;LEN=1;MEANALT=2.5;MQM=30.6667;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=86;QR=1263;RO=32;RPL=3;RPP=9.52472;RPPR=72.4974;RPR=0;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=72.4974;SRR=32;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:25:5,18,2:5:195:18,2:716,78:-48.8353,0,-10.6228,-44.2418,-9.95052,-59.6784 0|1:14:11,3,0:11:435:3,0:121,0:-4.88837,0,-35.2913,-8.1997,-36.1944,-44.054 0|1:23:14,7,1:14:555:7,1:263,8:-13.7725,0,-43.7493,-17.8363,-45.6974,-63.2665 0|0:2:2,0,0:2:78:0,0:0,0:0,-0.60206,-7.4033,-0.60206,-7.4033,-7.4033 dDocent_Contig_13679 12 . A T 51.4326 . AB=0.235294;ABP=13.3567;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=108;DPB=108;DPRA=0.56044;EPP=11.6962;EPPR=220.241;GTI=0;LEN=1;MEANALT=1;MQM=33;MQMR=57.1827;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.701923;PAO=0;PQA=0;PQR=0;PRO=0;QA=163;QR=4104;RO=104;RPL=0;RPP=11.6962;RPPR=228.843;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=103;SRP=220.241;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:34:34,0:34:1346:0:0:0,-10.235,-118.42 0/0:28:28,0:28:1101:0:0:0,-8.42884,-94.9161 0/0:29:29,0:29:1149:0:0:0,-8.72987,-98.8917 0/1:17:13,4:13:508:4:163:-6.84222,0,-40.9414 dDocent_Contig_13681 10 . T A 49.4176 . AB=0.1875;ABP=16.582;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=32;DPB=32;DPRA=7.5;EPP=11.6962;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=159;QR=1126;RO=28;RPL=0;RPP=11.6962;RPPR=63.8115;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:13,3:13:523:3:121:-6.46372,0,-42.6007 0/0:14:13,1:13:524:1:38:0,-0.417151,-43.7096 ./.:.:.:.:.:.:.:. 0/0:2:2,0:2:79:0:0:0,-0.60206,-7.49724 dDocent_Contig_13682 29 . T G 543.012 . AB=0.160714;ABP=59.0033;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X1M1X2M1X;DP=115;DPB=115;DPRA=9.33333;EPP=22.5536;EPPR=178.9;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=1.38778e-17;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=357;QR=3132;RO=81;RPL=0;RPP=22.5536;RPPR=178.9;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=81;SRP=178.9;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:56:42,0,14:42:1622:0,14:0,533:-31.4475,-44.0907,-177.301,0,-133.592,-129.378 0|0:41:26,6,9:26:1016:6,9:236,354:-21.2884,-9.70305,-91.4231,0,-64.1134,-80.8167 0|1:15:10,3,2:10:375:3,2:121,81:-6.96295,0,-29.7858,-3.29343,-24.0048,-33.3835 0|0:3:3,0,0:3:119:0,0:0,0:0,-0.90309,-11.0954,-0.90309,-11.0954,-11.0954 dDocent_Contig_13684 107 . N T 1282.53 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=44;CIGAR=1X;DP=44;DPB=44;DPRA=0;EPP=98.5551;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1405;QR=0;RO=0;RPL=0;RPP=98.5551;RPPR=0;RPR=44;RUN=1;SAF=0;SAP=98.5551;SAR=44;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:8:0,8:0:0:8:268:-24.4464,-2.40824,0 1/1:29:0,29:0:0:29:929:-83.905,-8.72987,0 1/1:3:0,3:0:0:3:77:-7.18526,-0.90309,0 1/1:4:0,4:0:0:4:131:-12.1138,-1.20412,0 dDocent_Contig_13685 10 . G T 121.904 . AB=0.333333;ABP=6.62942;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=34;DPB=34;DPRA=2.36842;EPP=13.8677;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.6;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=197;QR=1168;RO=29;RPL=0;RPP=13.8677;RPPR=65.983;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:10,5:10:401:5:197:-13.5878,0,-31.9328 0/0:8:8,0:8:320:0:0:0,-2.40824,-29.1679 0/0:10:10,0:10:406:0:0:0,-3.0103,-36.9004 0/0:1:1,0:1:41:0:0:0,-0.30103,-4.09457 dDocent_Contig_13686 53 . A G 1074.88 . AB=0.558824;ABP=5.05404;AC=4;AF=0.5;AN=8;AO=38;CIGAR=1X;DP=68;DPB=68;DPRA=0;EPP=85.5263;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.789474;PAIREDR=0.966667;PAO=0;PQA=0;PQR=0;PRO=0;QA=1488;QR=1170;RO=30;RPL=38;RPP=85.5263;RPPR=68.1545;RPR=0;RUN=1;SAF=38;SAP=85.5263;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:5,4:5:171:4:158:-11.891,0,-13.0097 0/1:11:5,6:5:203:6:238:-18.4828,0,-15.3417 0/1:39:16,23:16:633:23:894:-69.0247,0,-45.5649 0/1:9:4,5:4:163:5:198:-15.4877,0,-12.3492 dDocent_Contig_13687 48 . T C 951.537 . AB=0.298507;ABP=50.2641;AC=4;AF=0.5;AN=8;AO=40;CIGAR=1X;DP=134;DPB=134;DPRA=0;EPP=89.8692;EPPR=207.129;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.475;PAIREDR=0.585106;PAO=0;PQA=0;PQR=0;PRO=0;QA=1572;QR=3674;RO=94;RPL=0;RPP=89.8692;RPPR=207.129;RPR=40;RUN=1;SAF=40;SAP=89.8692;SAR=0;SRF=94;SRP=207.129;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:65:44,21:44:1731:21:842:-56.5258,0,-136.452 0/1:31:23,8:23:899:8:299:-17.9236,0,-71.885 0/1:28:19,9:19:730:9:351:-23.5205,0,-57.5852 0/1:10:8,2:8:314:2:80:-4.58149,0,-25.6101 dDocent_Contig_13688 31 . A T 602.942 . AB=0.229508;ABP=80.5425;AC=3;AF=0.375;AN=8;AO=32;CIGAR=1X2M;DP=178;DPB=178;DPRA=0;EPP=72.4974;EPPR=311.359;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.6875;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1285;QR=5568;RO=142;RPL=0;RPP=72.4974;RPPR=311.359;RPR=32;RUN=1;SAF=32;SAP=72.4974;SAR=0;SRF=142;SRP=311.359;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:74:54,0,20:54:2102:0,20:0,810:-50.9394,-67.1951,-239.918,0,-173.123,-167.103 0|0:56:48,4,4:48:1912:4,4:158,159:0,-1.45002,-157.685,-1.35854,-145.799,-157.596 0|1:24:21,0,3:21:821:0,3:0,123:-4.24007,-10.5617,-78.0406,0,-67.886,-66.9829 0|1:24:19,0,5:19:733:0,5:0,193:-10.5119,-16.2315,-76.4169,0,-60.571,-59.0658 dDocent_Contig_13689 19 . C G 622.256 . AB=0.316456;ABP=26.1269;AC=4;AF=0.5;AN=8;AO=25;CIGAR=1X;DP=79;DPB=79;DPRA=0;EPP=57.2971;EPPR=120.27;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.72;PAIREDR=0.611111;PAO=0;PQA=0;PQR=0;PRO=0;QA=1021;QR=2144;RO=54;RPL=0;RPP=57.2971;RPPR=120.27;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:19,10:19:771:10:407:-28.2607,0,-60.9774 0/1:12:8,4:8:327:4:163:-11.4461,0,-26.1877 0/1:26:17,9:17:651:9:369:-25.7487,0,-51.0766 0/1:12:10,2:10:395:2:82:-4.16732,0,-32.2945 dDocent_Contig_13690 7 . C T 732.137 . AB=0.513514;ABP=3.06899;AC=4;AF=0.5;AN=8;AO=25;CIGAR=1X;DP=51;DPB=51;DPRA=1.79167;EPP=57.2971;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.96;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=963;QR=1002;RO=26;RPL=0;RPP=57.2971;RPPR=59.4686;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:6:0,6:0:0:6:226:-20.7021,-1.80618,0 0/1:17:3,14:3:115:14:544:-44.1887,0,-5.60738 0/1:20:15,5:15:577:5:193:-11.7208,0,-46.2515 0/0:8:8,0:8:310:0:0:0,-2.40824,-28.2636 dDocent_Contig_13691 48 . G C 41.1905 . AB=0.125;ABP=42.0968;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=62;DPB=62;DPRA=3.2;EPP=11.6962;EPPR=128.956;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.965517;PAO=0;PQA=0;PQR=0;PRO=0;QA=164;QR=2240;RO=58;RPL=0;RPP=11.6962;RPPR=128.956;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:32:28,4:28:1075:4:164:-5.51694,0,-87.4059 0/0:11:11,0:11:442:0:0:0,-3.31133,-40.1358 0/0:13:13,0:13:493:0:0:0,-3.91339,-44.7084 0/0:6:6,0:6:230:0:0:0,-1.80618,-21.0626 dDocent_Contig_13692 80 . C T 240.27 . AB=0.47619;ABP=3.1137;AC=1;AF=0.125;AN=8;AO=10;CIGAR=1X;DP=47;DPB=47;DPRA=2.42308;EPP=24.725;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=349;QR=1265;RO=37;RPL=10;RPP=24.725;RPPR=83.3548;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:11,10:11:376:10:349:-25.4249,0,-27.8485 0/0:17:17,0:17:578:0:0:0,-5.11751,-52.3404 0/0:5:5,0:5:173:0:0:0,-1.50515,-15.9102 0/0:4:4,0:4:138:0:0:0,-1.20412,-12.7604 dDocent_Contig_13693 44 . A G 387.872 . AB=0.5;ABP=3.0103;AC=2;AF=0.25;AN=8;AO=13;CIGAR=2X1M;DP=54;DPB=54;DPRA=0.722222;EPP=31.2394;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=505;QR=1455;RO=37;RPL=0;RPP=31.2394;RPPR=83.3548;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:18:18,0,0:18:709:0,0:0,0:0,-5.41854,-64.1374,-5.41854,-64.1374,-64.1374 0|1:22:11,0,11:11:426:0,11:0,426:-32.0678,-35.3792,-70.3722,0,-35.38,-32.0687 0|1:4:2,0,2:2:81:0,2:0,79:-6.29351,-6.89557,-13.5797,0,-7.08367,-6.48161 0|0:10:6,4,0:6:239:4,0:158,0:-5.82379,0,-18.8751,-7.62997,-20.0792,-27.4067 dDocent_Contig_13694 13 . G C 98.7102 . AB=0.137931;ABP=36.0317;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X2M1X2M1X;DP=53;DPB=53;DPRA=1.20833;EPP=11.6962;EPPR=100.727;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=158;QR=1786;RO=45;RPL=0;RPP=11.6962;RPPR=100.727;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:5:5,0,0:5:198:0,0:0,0:0,-1.50515,-18.1976,-1.50515,-18.1976,-18.1976 0|0:23:17,2,4:17:678:2,4:80,162:-7.67175,-6.19554,-61.4382,0,-49.2457,-54.6319 0|0:19:19,0,0:19:756:0,0:0,0:0,-5.71957,-68.3644,-5.71957,-68.3644,-68.3644 0|1:6:4,2,0:4:154:2,0:78,0:-5.59712,0,-12.4267,-6.80124,-13.0288,-19.442 dDocent_Contig_13695 10 . G A 448.346 . AB=0.0550459;ABP=190.454;AC=0;AF=0;AN=8;AO=8;CIGAR=1X2M1X;DP=257;DPB=257;DPRA=0;EPP=20.3821;EPPR=467.705;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=0.625;PAIREDR=0.962617;PAO=0;PQA=0;PQR=0;PRO=0;QA=321;QR=8455;RO=214;RPL=0;RPP=20.3821;RPPR=467.705;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=214;SRP=467.705;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:106:95,0,0,11:95:3764:0,0,11:0,0,439:-7.95556,-36.5534,-346.348,-36.5534,-346.348,-346.348,0,-310.192,-310.192,-306.881 0|0:59:36,5,3,15:36:1422:5,3,15:201,112,601:-38.6816,-32.9532,-148.453,-40.3517,-140.789,-156.45,0,-100.443,-107.839,-112.493 0|0:50:44,1,0,5:44:1734:1,0,5:40,0,204:-3.59268,-13.5442,-155.882,-16.838,-156.183,-159.478,0,-139.35,-142.645,-141.14 0|0:42:39,2,0,1:39:1535:2,0,1:80,0,37:0,-5.13015,-130.821,-11.7402,-131.423,-138.014,-8.72308,-128.397,-134.987,-134.686 dDocent_Contig_13696 7 . C A 196.121 . AB=0.238095;ABP=40.5458;AC=3;AF=0.375;AN=8;AO=15;CIGAR=1X;DP=93;DPB=93;DPRA=0.7;EPP=35.5824;EPPR=172.385;GTI=0;LEN=1;MEANALT=1;MQM=39.6667;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=553;QR=3026;RO=78;RPL=0;RPP=35.5824;RPPR=172.385;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=78;SRP=172.385;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:30:30,0:30:1162:0:0:0,-9.0309,-104.878 0/1:25:18,7:18:701:7:258:-9.73467,0,-55.8983 0/1:31:25,6:25:970:6:218:-10.235,0,-78.2813 0/1:7:5,2:5:193:2:77:-5.0403,0,-15.6341 dDocent_Contig_13697 12 . A G 75.7494 . AB=0.222222;ABP=9.04217;AC=3;AF=0.375;AN=8;AO=4;CIGAR=1X;DP=68;DPB=68;DPRA=5.33333;EPP=11.6962;EPPR=141.985;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=162;QR=2576;RO=64;RPL=0;RPP=11.6962;RPPR=141.985;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=64;SRP=141.985;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1:0,1:0:0:1:40:-3.99568,-0.30103,0 0/0:54:53,1:53:2140:1:41:0,-12.1611,-188.673 0/1:9:7,2:7:279:2:81:-4.97646,0,-22.7719 0/0:4:4,0:4:157:0:0:0,-1.20412,-14.5079 dDocent_Contig_13698 107 . N T 817.822 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=26;CIGAR=1X;DP=26;DPB=26;DPRA=0;EPP=59.4686;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=886;QR=0;RO=0;RPL=0;RPP=59.4686;RPPR=0;RPR=26;RUN=1;SAF=0;SAP=59.4686;SAR=26;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:12:0,12:0:0:12:408:-37.0475,-3.61236,0 1/1:3:0,3:0:0:3:105:-9.79616,-0.90309,0 1/1:8:0,8:0:0:8:270:-24.6293,-2.40824,0 1/1:3:0,3:0:0:3:103:-9.61002,-0.90309,0 dDocent_Contig_13699 33 . A G 491.185 . AB=0.324324;ABP=12.9286;AC=2;AF=0.25;AN=8;AO=12;CIGAR=5M1X1M;DP=64;DPB=62.5714;DPRA=18.5;EPP=29.068;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=471;QR=1641;RO=42;RPL=0;RPP=29.068;RPPR=94.2121;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:27:16,0,11:16:635:0,11:0,430:-30.9222,-35.7386,-88.0135,0,-52.6678,-49.3565 0|0:26:17,9,0:17:664:9,0:323,0:-21.5745,0,-52.2654,-26.6921,-54.9746,-81.2972 0|1:10:8,1,1:8:315:1,1:40,41:-0.980785,-0.0988881,-25.6973,0,-22.6125,-25.6072 0|0:1:1,0,0:1:27:0,0:0,0:0,-0.30103,-2.69978,-0.30103,-2.69978,-2.69978 dDocent_Contig_13700 64 . G C 722.499 . AB=0.322314;ABP=36.1926;AC=4;AF=0.5;AN=8;AO=39;CIGAR=1X;DP=121;DPB=121;DPRA=0;EPP=87.6977;EPPR=178.9;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.975309;PAO=0;PQA=0;PQR=0;PRO=0;QA=1276;QR=2681;RO=81;RPL=39;RPP=87.6977;RPPR=178.9;RPR=0;RUN=1;SAF=39;SAP=87.6977;SAR=0;SRF=81;SRP=178.9;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:39:32,7:32:1054:7:225:-8.82542,0,-83.4179 0/1:21:12,9:12:404:9:297:-20.7304,0,-30.3622 0/1:36:24,12:24:794:12:387:-24.3035,0,-60.9297 0/1:25:13,11:13:429:11:367:-25.7885,0,-31.363 dDocent_Contig_13701 24 . T C 37.4159 . AB=0.1875;ABP=16.582;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=27;DPB=27;DPRA=4.36364;EPP=9.52472;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=110;QR=946;RO=24;RPL=0;RPP=9.52472;RPPR=55.1256;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:3:3,0:3:123:0:0:0,-0.90309,-11.4648 0/0:1:1,0:1:41:0:0:0,-0.30103,-4.09457 0/1:16:13,3:13:513:3:110:-5.43979,0,-41.6945 0/0:7:7,0:7:269:0:0:0,-2.10721,-24.5685 dDocent_Contig_13702 31 . A T 173.653 . AB=0.158537;ABP=86.0559;AC=2;AF=0.25;AN=8;AO=14;CIGAR=1X;DP=110;DPB=110;DPRA=5.77778;EPP=33.4109;EPPR=211.472;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=535;QR=3807;RO=96;RPL=0;RPP=33.4109;RPPR=211.472;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=96;SRP=211.472;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:41:33,8:33:1288:8:311:-16.0078,0,-103.847 0/1:41:36,5:36:1437:5:186:-4.75516,0,-117.238 0/0:22:21,1:21:839:1:38:0,-2.82539,-72.0273 0/0:6:6,0:6:243:0:0:0,-1.80618,-22.2482 dDocent_Contig_13703 15 . T C 1784.91 . AB=0.463235;ABP=4.60697;AC=4;AF=0.5;AN=8;AO=63;CIGAR=1X;DP=136;DPB=136;DPRA=0;EPP=139.813;EPPR=161.528;GTI=0;LEN=1;MEANALT=1;MQM=59.6667;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.863014;PAO=0;PQA=0;PQR=0;PRO=0;QA=2507;QR=2786;RO=73;RPL=0;RPP=139.813;RPPR=161.528;RPR=63;RUN=1;SAF=63;SAP=139.813;SAR=0;SRF=73;SRP=161.528;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:40:21,19:21:818:19:765:-57.1141,0,-61.8965 0/1:43:19,24:19:744:24:942:-72.0099,0,-54.3422 0/1:33:18,15:18:680:15:599:-44.3143,0,-51.5879 0/1:20:15,5:15:544:5:201:-12.4505,0,-43.2685 dDocent_Contig_13705 56 . G T 171.826 . AB=0.388889;ABP=4.9405;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=59;DPB=59;DPRA=1.31707;EPP=18.2106;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=266;QR=2043;RO=52;RPL=7;RPP=18.2106;RPPR=115.927;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:13:13,0:13:515:0:0:0,-3.91339,-46.6934 0/1:18:11,7:11:429:7:266:-18.8816,0,-33.536 0/0:16:16,0:16:613:0:0:0,-4.81648,-55.4953 0/0:12:12,0:12:486:0:0:0,-3.61236,-44.0916 dDocent_Contig_13706 9 . T C 243.26 . AB=0.306452;ABP=23.184;AC=4;AF=0.5;AN=8;AO=19;CIGAR=1X;DP=62;DPB=62;DPRA=0;EPP=44.2683;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=29.2105;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.976744;PAO=0;PQA=0;PQR=0;PRO=0;QA=738;QR=1647;RO=43;RPL=0;RPP=44.2683;RPPR=96.3836;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:20,6:20:772:6:232:-8.19062,0,-61.9813 0/1:12:9,3:9:334:3:117:-4.39188,0,-26.7973 0/1:13:5,8:5:193:8:311:-16.9456,0,-13.8281 0/1:11:9,2:9:348:2:78:-2.12012,0,-28.369 dDocent_Contig_13707 1 . N G 482.702 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=13;CIGAR=1X;DP=13;DPB=13;DPRA=0;EPP=31.2394;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=50.8462;MQMR=0;NS=3;NUMALT=1;ODDS=1.69407e-21;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=526;QR=0;RO=0;RPL=0;RPP=31.2394;RPPR=0;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1:0,1:0:0:1:41:-4.07343,-0.30103,0 1/1:8:0,8:0:0:8:324:-28.9092,-2.40824,0 1/1:4:0,4:0:0:4:161:-14.8096,-1.20412,0 ./.:.:.:.:.:.:.:. dDocent_Contig_13708 75 . T A 134.502 . AB=0.625;ABP=4.09604;AC=1;AF=0.125;AN=8;AO=5;CIGAR=2X;DP=24;DPB=24;DPRA=1.5;EPP=13.8677;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=191;QR=735;RO=19;RPL=5;RPP=13.8677;RPPR=44.2683;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:5:5,0:5:175:0:0:0,-1.50515,-16.0845 0|1:8:3,5:3:120:5:191:-15.1491,0,-8.77907 0|0:5:5,0:5:199:0:0:0,-1.50515,-18.2881 0|0:6:6,0:6:241:0:0:0,-1.80618,-22.0665 dDocent_Contig_13710 19 . C T 270.96 . AB=0.25;ABP=31.2394;AC=4;AF=0.5;AN=8;AO=13;CIGAR=1X;DP=52;DPB=52;DPRA=0;EPP=31.2394;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.692308;PAIREDR=0.641026;PAO=0;PQA=0;PQR=0;PRO=0;QA=520;QR=1569;RO=39;RPL=0;RPP=31.2394;RPPR=87.6977;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:11,1:11:439:1:38:-0.184909,0,-36.2497 0/1:18:11,7:11:444:7:282:-20.3335,0,-34.8955 0/1:13:11,2:11:446:2:80:-3.6784,0,-36.5826 0/1:9:6,3:6:240:3:120:-8.47804,0,-19.2657 dDocent_Contig_13711 85 . G A 73.8163 . AB=0.2;ABP=26.4622;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=75;DPB=75;DPRA=1.33333;EPP=16.0391;EPPR=152.842;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=199;QR=2319;RO=69;RPL=6;RPP=16.0391;RPPR=152.842;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=69;SRP=152.842;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:18:18,0:18:595:0:0:0,-5.41854,-53.8629 0/1:30:24,6:24:797:6:199:-9.20554,0,-63.0072 0/0:27:27,0:27:927:0:0:0,-8.12781,-83.7436 ./.:.:.:.:.:.:.:. dDocent_Contig_13712 127 . A G 1348.15 . AB=0.672414;ABP=17.986;AC=5;AF=0.625;AN=8;AO=53;CIGAR=1X;DP=72;DPB=72;DPRA=0;EPP=118.098;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.981132;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1738;QR=577;RO=19;RPL=0;RPP=118.098;RPPR=44.2683;RPR=53;RUN=1;SAF=0;SAP=118.098;SAR=53;SRF=0;SRP=44.2683;SRR=19;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:14:0,14:0:0:14:457:-41.4446,-4.21442,0 0/1:9:3,6:3:86:6:188:-14.5185,0,-5.31574 0/1:26:6,20:6:159:20:657:-51.612,0,-6.74588 0/1:23:10,13:10:332:13:436:-32.6376,0,-23.2792 dDocent_Contig_13713 33 . A T 76.0067 . AB=0.222222;ABP=15.074;AC=1;AF=0.125;AN=8;AO=4;CIGAR=2X;DP=41;DPB=41;DPRA=2.34783;EPP=11.6962;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=156;QR=1481;RO=37;RPL=0;RPP=11.6962;RPPR=83.3548;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:18:14,4:14:554:4:156:-8.99858,0,-44.7854 0|0:10:10,0:10:402:0:0:0,-3.0103,-36.5402 0|0:6:6,0:6:244:0:0:0,-1.80618,-22.3388 0|0:7:7,0:7:281:0:0:0,-2.10721,-25.6626 dDocent_Contig_13714 42 . C T 110.454 . AB=0.163636;ABP=57.0602;AC=2;AF=0.25;AN=8;AO=10;CIGAR=1X2M1X;DP=90;DPB=90;DPRA=0;EPP=24.725;EPPR=165.871;GTI=0;LEN=1;MEANALT=1.75;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.84;PAO=0;PQA=0;PQR=0;PRO=0;QA=390;QR=2886;RO=75;RPL=0;RPP=24.725;RPPR=165.871;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=75;SRP=165.871;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:35:32,1,2:32:1224:1,2:40,82:0,-6.34117,-106.443,-2.85821,-99.9745,-102.668 0|1:12:8,3,1:8:309:3,1:121,40:-7.56848,0,-24.4615,-6.68246,-22.0679,-31.7458 0|1:29:25,4,0:25:965:4,0:150,0:-5.13371,0,-78.4248,-12.6595,-79.6289,-91.9122 0|0:14:10,2,2:10:388:2,2:79,81:-3.67381,-0.188103,-31.4497,0,-25.3698,-31.2699 dDocent_Contig_13715 28 . G C 238.002 . AB=0.45;ABP=3.44459;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=27;DPB=27;DPRA=1.42857;EPP=22.5536;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=362;QR=728;RO=18;RPL=0;RPP=22.5536;RPPR=42.0968;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 0/1:16:9,7:9:365:7:282:-20.9356,0,-28.398 0/1:4:2,2:2:79:2:80:-6.38745,0,-6.29312 0/0:7:7,0:7:284:0:0:0,-2.10721,-25.934 dDocent_Contig_13717 24 . G A 480.798 . AB=0.31746;ABP=21.2438;AC=2;AF=0.25;AN=8;AO=21;CIGAR=1X;DP=110;DPB=110;DPRA=0.888889;EPP=48.6112;EPPR=196.271;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=815;QR=3535;RO=89;RPL=0;RPP=48.6112;RPPR=196.271;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=89;SRP=196.271;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:30:30,0:30:1198:0:0:0,-9.0309,-108.097 0/1:31:21,10:21:845:10:372:-24.4819,0,-67.0315 0/1:32:22,10:22:887:10:403:-26.9958,0,-70.5022 0/0:17:16,1:16:605:1:40:0,-1.12183,-50.7775 dDocent_Contig_13718 24 . C T 361.385 . AB=0.5;ABP=3.0103;AC=2;AF=0.25;AN=8;AO=13;CIGAR=1X;DP=72;DPB=72;DPRA=0.565217;EPP=31.2394;EPPR=131.127;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=518;QR=2368;RO=59;RPL=0;RPP=31.2394;RPPR=131.127;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=59;SRP=131.127;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:24:24,0:24:974:0:0:0,-7.22472,-87.9561 0/0:22:22,0:22:884:0:0:0,-6.62266,-79.8619 0/1:15:8,7:8:319:7:276:-20.6904,0,-24.5588 0/1:11:5,6:5:191:6:242:-18.846,0,-14.2428 dDocent_Contig_13720 43 . G A 174.38 . AB=0.444444;ABP=3.49285;AC=2;AF=0.25;AN=8;AO=8;CIGAR=1X;DP=47;DPB=47;DPRA=0.62069;EPP=20.3821;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=284;QR=1439;RO=39;RPL=0;RPP=20.3821;RPPR=87.6977;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:21:21,0:21:758:0:0:0,-6.32163,-68.5352 0/1:11:7,4:7:271:4:150:-10.5539,0,-21.4444 0/1:7:3,4:3:107:4:134:-10.2821,0,-7.87299 0/0:8:8,0:8:303:0:0:0,-2.40824,-27.6285 dDocent_Contig_13722 15 . C T 242.181 . AB=0.615385;ABP=4.51363;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=68;DPB=68;DPRA=0.709091;EPP=20.3821;EPPR=133.299;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.983333;PAO=0;PQA=0;PQR=0;PRO=0;QA=324;QR=2361;RO=60;RPL=0;RPP=20.3821;RPPR=133.299;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:5,8:5:196:8:324:-25.616,0,-14.1002 0/0:40:40,0:40:1583:0:0:0,-12.0412,-142.714 0/0:8:8,0:8:312:0:0:0,-2.40824,-28.4402 0/0:7:7,0:7:270:0:0:0,-2.10721,-24.6605 dDocent_Contig_13723 71 . T C 55.5257 . AB=0.3;ABP=6.48466;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=22;DPB=22;DPRA=2.5;EPP=9.52472;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=110;QR=659;RO=19;RPL=3;RPP=9.52472;RPPR=44.2683;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:9:9,0:9:323:0:0:0,-2.70927,-29.4144 0/0:1:1,0:1:37:0:0:0,-0.30103,-3.69783 0/1:10:7,3:7:225:3:110:-7.2507,0,-17.5532 0/0:2:2,0:2:74:0:0:0,-0.60206,-7.02588 dDocent_Contig_13724 11 . T C 402.057 . AB=0.375;ABP=7.35324;AC=5;AF=0.625;AN=8;AO=15;CIGAR=1X;DP=35;DPB=35;DPRA=0;EPP=35.5824;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=596;QR=800;RO=20;RPL=0;RPP=35.5824;RPPR=46.4397;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:119:-11.095,-0.90309,0 0/1:14:6,8:6:244:8:319:-24.8615,0,-18.1244 0/1:13:10,3:10:396:3:123:-7.5514,0,-32.0838 0/1:5:4,1:4:160:1:35:-1.99348,0,-13.2778 dDocent_Contig_13725 7 . C A 170.293 . AB=0.121429;ABP=177.286;AC=3;AF=0.375;AN=8;AO=19;CIGAR=1M2I1X1M1X4M1X2M1X2M2X;DP=243;DPB=244.125;DPRA=0;EPP=44.2683;EPPR=303.103;GTI=0;LEN=1;MEANALT=4.33333;MQM=59.8421;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=0.947368;PAIREDR=0.832487;PAO=0;PQA=0;PQR=0;PRO=0;QA=727;QR=7579;RO=197;RPL=0;RPP=44.2683;RPPR=430.79;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=181;SRP=303.103;SRR=16;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:67:56,1,2,0:56:2156:1,2,0:37,78,0:0,-13.8306,-190.547,-10.4444,-184.439,-186.864,-16.8577,-190.848,-187.466,-193.875 0|1:115:95,0,11,3:95:3665:0,11,3:0,423,122:-6.12072,-34.7186,-335.669,0,-300.941,-297.629,-24.6528,-325.605,-290.877,-324.702 0|1:36:32,3,0,0:32:1224:3,0,0:117,0,0:-0.209417,0,-99.8136,-9.84238,-100.717,-110.336,-9.84238,-100.717,-110.336,-110.336 0|1:25:14,0,6,2:14:534:0,6,2:0,226,73:-14.3048,-18.5192,-62.3277,0,-43.8096,-42.0034,-12.5593,-56.3665,-37.8489,-55.7644 dDocent_Contig_13726 28 . T A 280.73 . AB=0.15;ABP=24.2907;AC=0;AF=0;AN=8;AO=3;CIGAR=2X3M1X;DP=44;DPB=44;DPRA=0;EPP=9.52472;EPPR=63.8115;GTI=0;LEN=1;MEANALT=2;MQM=47;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=121;QR=1066;RO=28;RPL=0;RPP=9.52472;RPPR=63.8115;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:12:10,0,2:10:386:0,2:0,82:-4.16732,-7.17762,-38.8576,0,-32.0854,-31.4834 0|0:11:6,2,3:6:231:2,3:80,123:-8.35648,-3.71386,-22.0623,0,-12.5039,-18.0584 0|0:9:6,1,2:6:232:1,2:41,82:-4.96811,-3.47596,-22.2131,0,-15.7402,-18.4415 0|0:12:6,0,6:6:217:0,6:0,236:-17.9781,-19.7843,-37.4779,0,-18.0706,-16.2644 dDocent_Contig_13727 13 . C A 71.4273 . AB=0.192308;ABP=24.391;AC=2;AF=0.25;AN=8;AO=5;CIGAR=1X3M1X;DP=40;DPB=40;DPRA=1.85714;EPP=13.8677;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=55.2;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.8;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=201;QR=1411;RO=35;RPL=0;RPP=13.8677;RPPR=79.0118;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:16:13,3:13:524:3:121:-5.95861,0,-42.6912 0|0:12:12,0:12:482:0:0:0,-3.61236,-43.7321 0|1:10:8,2:8:324:2:80:-4.58149,0,-26.5189 0|0:2:2,0:2:81:0:0:0,-0.60206,-7.68573 dDocent_Contig_13728 87 . A C 69.9131 . AB=0.142857;ABP=10.7656;AC=3;AF=0.375;AN=8;AO=3;CIGAR=1X;DP=51;DPB=51;DPRA=0.214286;EPP=9.52472;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=8.67362e-19;PAIRED=0;PAIREDR=0.666667;PAO=0;PQA=0;PQR=0;PRO=0;QA=102;QR=1540;RO=48;RPL=3;RPP=9.52472;RPPR=9.52472;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=30;SRP=9.52472;SRR=18;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:67:-6.36304,-0.60206,0 0/0:17:17,0:17:553:0:0:0,-5.11751,-50.0801 0/0:25:25,0:25:806:0:0:0,-7.52575,-72.8413 0/1:7:6,1:6:181:1:35:-1.39142,0,-14.48 dDocent_Contig_13729 50 . C T 54.8427 . AB=0.153846;ABP=16.5402;AC=1;AF=0.125;AN=8;AO=2;CIGAR=2X;DP=39;DPB=39;DPRA=1.36842;EPP=7.35324;EPPR=76.8404;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0.970588;PAO=0;PQA=0;PQR=0;PRO=0;QA=76;QR=1357;RO=34;RPL=2;RPP=7.35324;RPPR=76.8404;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:7:5,0,2:5:204:0,2:0,82:-5.67247,-7.17762,-24.0076,0,-17.2389,-16.6368 0|1:13:10,2,1:10:392:2,1:76,41:-3.20277,0,-31.6165,-2.81908,-28.8329,-34.7628 0|0:13:13,0,0:13:527:0,0:0,0:0,-3.91339,-47.7771,-3.91339,-47.7771,-47.7771 0|0:6:6,0,0:6:234:0,0:0,0:0,-1.80618,-21.4257,-1.80618,-21.4257,-21.4257 dDocent_Contig_13731 107 . N T 388.68 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=12;CIGAR=1X;DP=12;DPB=12;DPRA=0;EPP=29.068;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=0.916667;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=410;QR=0;RO=0;RPL=0;RPP=29.068;RPPR=0;RPR=12;RUN=1;SAF=0;SAP=29.068;SAR=12;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:69:-6.55266,-0.60206,0 1/1:6:0,6:0:0:6:202:-18.5106,-1.80618,0 1/1:1:0,1:0:0:1:35:-3.49863,-0.30103,0 1/1:3:0,3:0:0:3:104:-9.70309,-0.90309,0 dDocent_Contig_13732 150 . T C 94.9613 . AB=0.363636;ABP=4.78696;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=53;DPB=53;DPRA=0.785714;EPP=11.6962;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=157;QR=1950;RO=49;RPL=0;RPP=11.6962;RPPR=109.412;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=109.412;SRR=49;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:19:19,0:19:763:0:0:0,-5.71957,-68.9914 0/0:17:17,0:17:658:0:0:0,-5.11751,-59.5449 0/0:6:6,0:6:243:0:0:0,-1.80618,-22.2476 0/1:11:7,4:7:286:4:157:-11.1951,0,-22.8035 dDocent_Contig_13733 16 . G A 50.739 . AB=0.173913;ABP=24.253;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1X;DP=25;DPB=25;DPRA=5.75;EPP=11.6962;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=157;QR=829;RO=21;RPL=0;RPP=11.6962;RPPR=48.6112;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 0/0:2:2,0:2:78:0:0:0,-0.60206,-7.4033 0/1:14:11,3:11:438:3:119:-6.88008,0,-35.5572 0/1:9:8,1:8:313:1:38:-1.088,0,-25.8213 dDocent_Contig_13734 40 . A G 148.52 . AB=0.285714;ABP=14.1779;AC=3;AF=0.375;AN=8;AO=8;CIGAR=1X;DP=31;DPB=31;DPRA=3.11111;EPP=20.3821;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.869565;PAO=0;PQA=0;PQR=0;PRO=0;QA=302;QR=914;RO=23;RPL=0;RPP=20.3821;RPPR=52.9542;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:3:3,0:3:122:0:0:0,-0.90309,-11.3725 0/1:7:3,4:3:120:4:142:-11.0184,0,-9.08069 0/1:13:10,3:10:389:3:119:-7.18162,0,-31.4506 0/1:8:7,1:7:283:1:41:-1.68633,0,-23.4353 dDocent_Contig_13735 12 . T G 992.369 . AB=0.264706;ABP=35.7101;AC=5;AF=0.625;AN=8;AO=18;CIGAR=1X5M;DP=87;DPB=87;DPRA=0;EPP=42.0968;EPPR=87.6977;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=681;QR=1515;RO=39;RPL=0;RPP=42.0968;RPPR=87.6977;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:30:13,11,6:13:497:11,6:430,218:-29.627,0,-37.4781,-15.7473,-22.9991,-54.7229 0|1:19:14,5,0:14:552:5,0:198,0:-11.5855,0,-44.301,-15.7999,-45.8062,-61.2253 0|1:22:11,3,8:11:428:3,8:111,307:-21.9024,-16.5215,-50.7932,0,-26.505,-32.7894 1|1:16:1,11,4:1:38:11,4:439,156:-43.52,-9.71585,-9.51905,-30.9954,0,-32.908 dDocent_Contig_13736 11 . G A 460.46 . AB=0.115385;ABP=36.4176;AC=4;AF=0.5;AN=8;AO=3;CIGAR=1X2M;DP=41;DPB=41;DPRA=13;EPP=9.52472;EPPR=48.6112;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.666667;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=123;QR=839;RO=21;RPL=0;RPP=9.52472;RPPR=48.6112;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:18:8,8,2:8:322:8,2:305,82:-22.5833,0,-24.1243,-18.2177,-19.7629,-44.1646 0|1:14:12,2,0:12:477:2,0:74,0:-2.81101,0,-39.0669,-6.42337,-39.669,-45.7187 1|1:8:0,7,1:0:0:7,1:267,41:-25.6705,-3.79354,-1.68633,-22.2829,0,-21.9818 0|0:1:1,0,0:1:40:0,0:0,0:0,-0.30103,-3.99568,-0.30103,-3.99568,-3.99568 dDocent_Contig_13737 11 . G A 102.843 . AB=0.4;ABP=3.87889;AC=1;AF=0.125;AN=8;AO=4;CIGAR=2X1M1X;DP=25;DPB=25;DPRA=2;EPP=11.6962;EPPR=40.3389;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.809524;PAO=0;PQA=0;PQR=0;PRO=0;QA=159;QR=843;RO=21;RPL=0;RPP=11.6962;RPPR=48.6112;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=20;SRP=40.3389;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:10:6,4:6:240:4:159:-11.6818,0,-18.9651 0|0:2:2,0:2:81:0:0:0,-0.60206,-7.68573 0|0:10:10,0:10:401:0:0:0,-3.0103,-36.4496 0|0:3:3,0:3:121:0:0:0,-0.90309,-11.2802 dDocent_Contig_13738 7 . C T 110.485 . AB=0;ABP=0;AC=2;AF=0.25;AN=8;AO=3;CIGAR=1X;DP=32;DPB=32;DPRA=0.310345;EPP=9.52472;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=112;QR=1104;RO=29;RPL=0;RPP=9.52472;RPPR=65.983;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:112:-10.4463,-0.90309,0 0/0:10:10,0:10:373:0:0:0,-3.0103,-33.9199 0/0:10:10,0:10:386:0:0:0,-3.0103,-35.0966 0/0:9:9,0:9:345:0:0:0,-2.70927,-31.4075 dDocent_Contig_13740 82 . C T 69.487 . AB=0;ABP=0;AC=2;AF=0.25;AN=8;AO=2;CIGAR=1X;DP=52;DPB=52;DPRA=0.12;EPP=7.35324;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=70;QR=1739;RO=50;RPL=2;RPP=7.35324;RPPR=111.584;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:19:19,0:19:663:0:0:0,-5.71957,-59.9959 0/0:21:21,0:21:734:0:0:0,-6.32163,-66.3837 0/0:10:10,0:10:342:0:0:0,-3.0103,-31.1111 1/1:2:0,2:0:0:2:70:-6.6474,-0.60206,0 dDocent_Contig_13742 8 . T G 108.306 . AB=0.25;ABP=5.18177;AC=4;AF=0.5;AN=8;AO=3;CIGAR=1X2M;DP=24;DPB=24;DPRA=0.375;EPP=9.52472;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=115;QR=735;RO=19;RPL=0;RPP=9.52472;RPPR=44.2683;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:4:3,0,1:3:117:0,1:0,39:-2.69244,-3.59553,-13.2132,0,-10.0073,-9.70626 1|1:2:0,0,2:0:0:0,2:0,76:-7.21467,-7.21467,-7.21467,-0.60206,-0.60206,0 0|0:8:8,0,0:8:311:0,0:0,0:0,-2.40824,-28.3543,-2.40824,-28.3543,-28.3543 0|1:10:8,2,0:8:307:2,0:77,0:-4.29884,0,-24.9809,-6.70708,-25.583,-31.9056 dDocent_Contig_13743 162 . G A 71.6097 . AB=0.25;ABP=13.8677;AC=3;AF=0.375;AN=8;AO=5;CIGAR=1X;DP=33;DPB=33;DPRA=0.512821;EPP=13.8677;EPPR=55.4358;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.964286;PAO=0;PQA=0;PQR=0;PRO=0;QA=187;QR=1125;RO=28;RPL=5;RPP=13.8677;RPPR=55.4358;RPR=0;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=63.8115;SRR=28;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:6:3,3:3:120:3:109:-8.36132,0,-9.38151 0/0:13:13,0:13:519:0:0:0,-3.91339,-47.0559 0/1:8:7,1:7:282:1:39:-1.48832,0,-23.3444 0/1:6:5,1:5:204:1:39:-2.09038,0,-16.9379 dDocent_Contig_13744 11 . C T 130.235 . AB=0.24;ABP=17.6895;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=67;DPB=67;DPRA=1.78571;EPP=16.0391;EPPR=135.47;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.95082;PAO=0;PQA=0;PQR=0;PRO=0;QA=243;QR=2481;RO=61;RPL=0;RPP=16.0391;RPPR=135.47;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=61;SRP=135.47;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:17:17,0:17:692:0:0:0,-5.11751,-62.6079 0/1:25:19,6:19:770:6:243:-14.7224,0,-62.0943 0/0:17:17,0:17:696:0:0:0,-5.11751,-62.9668 0/0:8:8,0:8:323:0:0:0,-2.40824,-29.4381 dDocent_Contig_13745 113 . C A 62.9337 . AB=0.75;ABP=5.18177;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=36;DPB=36;DPRA=0.375;EPP=9.52472;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=98;QR=1075;RO=33;RPL=0;RPP=9.52472;RPPR=74.6689;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=74.6689;SRR=33;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:24:24,0:24:768:0:0:0,-7.22472,-69.4183 0/0:7:7,0:7:238:0:0:0,-2.10721,-21.7524 0/1:4:1,3:1:35:3:98:-7.93993,0,-2.29451 0/0:1:1,0:1:34:0:0:0,-0.30103,-3.39891 dDocent_Contig_13746 10 . C A 147.557 . AB=0.714286;ABP=5.80219;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=44;DPB=44;DPRA=0.567568;EPP=13.8677;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=202;QR=1561;RO=39;RPL=0;RPP=13.8677;RPPR=87.6977;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:13:13,0:13:527:0:0:0,-3.91339,-47.7766 0/0:15:15,0:15:608:0:0:0,-4.51545,-55.0566 0/1:7:2,5:2:80:5:202:-16.4547,0,-5.48436 0/0:9:9,0:9:346:0:0:0,-2.70927,-31.4955 dDocent_Contig_13747 14 . A G 249.71 . AB=0.203125;ABP=52.0041;AC=2;AF=0.25;AN=8;AO=13;CIGAR=1X;DP=104;DPB=104;DPRA=1.6;EPP=31.2394;EPPR=200.614;GTI=0;LEN=1;MEANALT=1;MQM=59.7692;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=521;QR=3583;RO=91;RPL=0;RPP=31.2394;RPPR=200.614;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=91;SRP=200.614;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:36:36,0:36:1431:0:0:0,-10.8371,-129.049 0/1:39:31,8:31:1189:8:319:-17.3364,0,-95.5489 0/1:25:20,5:20:800:5:202:-11.0325,0,-64.7927 0/0:4:4,0:4:163:0:0:0,-1.20412,-15.0584 dDocent_Contig_13751 107 . N T 348.904 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=11;CIGAR=1X;DP=11;DPB=11;DPRA=0;EPP=26.8965;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=371;QR=0;RO=0;RPL=0;RPP=26.8965;RPPR=0;RPR=11;RUN=1;SAF=0;SAP=26.8965;SAR=11;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:9:0,9:0:0:9:301:-27.4146,-2.70927,0 1/1:1:0,1:0:0:1:34:-3.39891,-0.30103,0 ./.:.:.:.:.:.:.:. 1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0 dDocent_Contig_13752 158 . G A 1414.15 . AB=0.0689655;ABP=49.8093;AC=0;AF=0;AN=8;AO=2;CIGAR=1X3M1X;DP=102;DPB=102;DPRA=0;EPP=7.35324;EPPR=43.7857;GTI=0;LEN=1;MEANALT=2;MQM=30;MQMR=50.9167;NS=4;NUMALT=2;ODDS=6.93889e-18;PAIRED=0;PAIREDR=0.694444;PAO=0;PQA=0;PQR=0;PRO=0;QA=77;QR=1353;RO=36;RPL=2;RPP=7.35324;RPPR=43.7857;RPR=0;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=81.1833;SRR=36;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:41:19,0,22:19:732:0,22:0,849:-50.3189,-56.0385,-116.135,0,-60.4489,-53.8262 0|0:14:3,0,10:3:115:0,10:0,395:-25.1312,-26.0343,-34.8578,0,-8.80912,-5.79882 0|0:18:5,0,13:5:161:0,13:0,517:-29.4469,-30.9521,-39.0346,0,-8.31884,-4.40545 0|0:29:9,2,18:9:345:2,18:77,706:-43.9159,-41.9382,-66.7828,0,-20.8017,-20.0631 dDocent_Contig_13753 7 . C A 322.823 . AB=0.263158;ABP=30.7823;AC=2;AF=0.25;AN=8;AO=16;CIGAR=1X;DP=89;DPB=89;DPRA=1.64444;EPP=37.7539;EPPR=161.528;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.986301;PAO=0;PQA=0;PQR=0;PRO=0;QA=618;QR=2791;RO=73;RPL=0;RPP=37.7539;RPPR=161.528;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=73;SRP=161.528;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:15:15,0:15:568:0:0:0,-4.51545,-51.4578 0/1:22:15,7:15:584:7:271:-18.1338,0,-46.2806 0/1:35:27,8:27:1020:8:308:-17.5464,0,-81.5701 0/0:17:16,1:16:619:1:39:0,-1.22095,-52.153 dDocent_Contig_13754 10 . C A 229.233 . AB=0.5;ABP=3.0103;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=38;DPB=38;DPRA=2.18182;EPP=20.3821;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.633333;PAO=0;PQA=0;PQR=0;PRO=0;QA=323;QR=1191;RO=30;RPL=0;RPP=20.3821;RPPR=68.1545;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:3:3,0:3:121:0:0:0,-0.90309,-11.2802 0/1:16:8,8:8:302:8:323:-24.6221,0,-22.7147 0/0:14:14,0:14:566:0:0:0,-4.21442,-51.2823 0/0:5:5,0:5:202:0:0:0,-1.50515,-18.5619 dDocent_Contig_13755 25 . G A 428.683 . AB=0.25;ABP=46.4397;AC=3;AF=0.375;AN=8;AO=21;CIGAR=1X;DP=94;DPB=94;DPRA=0;EPP=48.6112;EPPR=161.528;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.863014;PAO=0;PQA=0;PQR=0;PRO=0;QA=814;QR=2891;RO=73;RPL=0;RPP=48.6112;RPPR=161.528;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=73;SRP=161.528;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:16,2:16:637:2:74:-1.60734,0,-52.2447 0/1:31:23,8:23:932:8:320:-19.8352,0,-74.8509 0/1:31:21,10:21:816:10:393:-26.3892,0,-64.4212 0/0:14:13,1:13:506:1:27:0,-1.51464,-43.1733 dDocent_Contig_13756 12 . G A 96.5569 . AB=0.333333;ABP=5.9056;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=43;DPB=43;DPRA=1.16129;EPP=11.6962;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=162;QR=1572;RO=39;RPL=0;RPP=11.6962;RPPR=87.6977;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:4:4,0:4:164:0:0:0,-1.20412,-15.1499 0/1:12:8,4:8:318:4:162:-11.3546,0,-25.3734 0/0:16:16,0:16:645:0:0:0,-4.81648,-58.3833 0/0:11:11,0:11:445:0:0:0,-3.31133,-40.405 dDocent_Contig_13757 20 . G A 74.0919 . AB=0.307692;ABP=7.18621;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=24;DPB=24;DPRA=2.36364;EPP=11.6962;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=139;QR=791;RO=20;RPL=0;RPP=11.6962;RPPR=46.4397;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:9,4:9:356:4:139:-8.93188,0,-28.4878 0/0:3:3,0:3:118:0:0:0,-0.90309,-11.0016 0/0:8:8,0:8:317:0:0:0,-2.40824,-28.8964 ./.:.:.:.:.:.:.:. dDocent_Contig_13758 182 . T A 294.068 . AB=0.846154;ABP=16.5402;AC=1;AF=0.125;AN=8;AO=12;CIGAR=1X;DP=44;DPB=44;DPRA=1.58824;EPP=29.068;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=40;MQMR=40;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=452;QR=1261;RO=31;RPL=12;RPP=29.068;RPPR=70.3259;RPR=0;RUN=1;SAF=0;SAP=29.068;SAR=12;SRF=0;SRP=70.3259;SRR=31;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:14:13,0:13:532:0:0:0,-3.91339,-43.7868 0/1:13:2,11:2:82:11:411:-31.0986,0,-3.20423 0/0:14:13,1:13:525:1:41:0,-0.468302,-40.0951 0/0:3:3,0:3:122:0:0:0,-0.90309,-10.4451 dDocent_Contig_13759 8 . T C 1585.03 . AB=0.679012;ABP=25.5561;AC=4;AF=0.5;AN=8;AO=55;CIGAR=1X;DP=81;DPB=81;DPRA=0;EPP=122.441;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2099;QR=985;RO=26;RPL=0;RPP=122.441;RPPR=59.4686;RPR=55;RUN=1;SAF=55;SAP=122.441;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:12,9:12:454:9:341:-24.7237,0,-34.8849 0/1:18:4,14:4:150:14:534:-42.9846,0,-8.44696 0/1:27:6,21:6:226:21:804:-64.5569,0,-12.5737 0/1:15:4,11:4:155:11:420:-33.6358,0,-9.80999 dDocent_Contig_13760 99 . N A 72.159 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=9X1M1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=76;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:2:0,2:0:0:2:76:-7.21481,-0.60206,0 .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. dDocent_Contig_13761 80 . T C 207.112 . AB=0.727273;ABP=7.94546;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=37;DPB=37;DPRA=1.26923;EPP=20.3821;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=282;QR=1035;RO=29;RPL=8;RPP=20.3821;RPPR=65.983;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136 0/1:11:3,8:3:108:8:282:-22.4101,0,-6.76384 0/0:14:14,0:14:501:0:0:0,-4.21442,-45.4268 0/0:8:8,0:8:282:0:0:0,-2.40824,-25.7216 dDocent_Contig_13763 61 . G A 225.266 . AB=0.323529;ABP=12.2071;AC=2;AF=0.25;AN=8;AO=11;CIGAR=1X;DP=64;DPB=64;DPRA=1.13333;EPP=26.8965;EPPR=65.3275;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.867925;PAO=0;PQA=0;PQR=0;PRO=0;QA=394;QR=1912;RO=53;RPL=11;RPP=26.8965;RPPR=118.098;RPR=0;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=46;SRP=65.3275;SRR=7;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:20:20,0:20:722:0:0:0,-6.0206,-65.3074 0/0:10:10,0:10:358:0:0:0,-3.0103,-32.5622 0/1:22:16,6:16:586:6:213:-12.8938,0,-46.4478 0/1:12:7,5:7:246:5:181:-13.0307,0,-18.8694 dDocent_Contig_13764 76 . G C 252.527 . AB=0.317073;ABP=14.9269;AC=3;AF=0.375;AN=8;AO=13;CIGAR=1X;DP=42;DPB=42;DPRA=13.6667;EPP=31.2394;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.692308;PAIREDR=0.965517;PAO=0;PQA=0;PQR=0;PRO=0;QA=466;QR=1050;RO=29;RPL=13;RPP=31.2394;RPPR=65.983;RPR=0;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:16,6:16:588:6:213:-12.8921,0,-46.6348 0/1:5:2,3:2:74:3:105:-8.29029,0,-5.52073 0/1:14:10,4:10:359:4:148:-9.46755,0,-28.4376 0/0:1:1,0:1:29:0:0:0,-0.30103,-2.89966 dDocent_Contig_13765 14 . G T 188.273 . AB=0.196078;ABP=43.9277;AC=2;AF=0.25;AN=8;AO=10;CIGAR=1X;DP=95;DPB=95;DPRA=1.15909;EPP=24.725;EPPR=187.585;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=409;QR=3398;RO=85;RPL=0;RPP=24.725;RPPR=187.585;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=85;SRP=187.585;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:24:24,0:24:977:0:0:0,-7.22472,-88.2251 0/0:20:20,0:20:802:0:0:0,-6.0206,-72.4971 0/1:35:28,7:28:1108:7:287:-15.6692,0,-89.4622 0/1:16:13,3:13:511:3:122:-6.55601,0,-41.5177 dDocent_Contig_13766 7 . C T 399.073 . AB=0.395349;ABP=7.10075;AC=4;AF=0.5;AN=8;AO=17;CIGAR=1X2M1X;DP=43;DPB=43;DPRA=0;EPP=39.9253;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.117647;PAIREDR=0.961538;PAO=0;PQA=0;PQR=0;PRO=0;QA=644;QR=1000;RO=26;RPL=0;RPP=39.9253;RPPR=59.4686;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:22:14,8:14:537:8:309:-21.5503,0,-42.0524 0|1:8:7,1:7:271:1:36:-1.19004,0,-22.3482 0|1:10:3,7:3:117:7:262:-20.9273,0,-7.90008 0|1:3:2,1:2:75:1:37:-2.79474,0,-6.21701 dDocent_Contig_13768 7 . C A 30.9889 . AB=0.142857;ABP=26.2761;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=34;DPB=34;DPRA=4.84615;EPP=9.52472;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.333333;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=116;QR=1201;RO=31;RPL=0;RPP=9.52472;RPPR=70.3259;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:18,3:18:701:3:116:-4.49607,0,-57.1025 0/0:8:8,0:8:311:0:0:0,-2.40824,-28.3543 0/0:2:2,0:2:74:0:0:0,-0.60206,-7.02543 0/0:3:3,0:3:115:0:0:0,-0.90309,-10.7249 dDocent_Contig_13770 7 . C T 275.943 . AB=0.324324;ABP=12.9286;AC=2;AF=0.25;AN=8;AO=14;CIGAR=1X;DP=84;DPB=84;DPRA=1.41667;EPP=33.4109;EPPR=155.013;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.7714;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=0.5;PAIREDR=0.942857;PAO=0;PQA=0;PQR=0;PRO=0;QA=538;QR=2689;RO=70;RPL=0;RPP=33.4109;RPPR=155.013;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=70;SRP=155.013;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:31:29,2:29:1112:2:78:0,-1.92846,-92.9723 0/1:25:21,4:21:809:4:151:-6.4316,0,-65.6055 0/0:16:16,0:16:613:0:0:0,-4.81648,-55.5077 0/1:12:4,8:4:155:8:309:-24.5606,0,-10.7093 dDocent_Contig_13771 134 . A G 762.029 . AB=0.578947;ABP=6.09608;AC=4;AF=0.5;AN=8;AO=33;CIGAR=1X;DP=57;DPB=57;DPRA=0;EPP=74.6689;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.939394;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1105;QR=902;RO=24;RPL=0;RPP=74.6689;RPPR=55.1256;RPR=33;RUN=1;SAF=0;SAP=74.6689;SAR=33;SRF=0;SRP=55.1256;SRR=24;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:9,9:9:340:9:276:-19.7195,0,-25.5359 0/1:13:3,10:3:114:10:342:-27.1976,0,-6.71859 0/1:16:5,11:5:189:11:382:-29.8979,0,-12.5589 0/1:10:7,3:7:259:3:105:-6.78586,0,-20.6551 dDocent_Contig_13772 33 . C T 36.8293 . AB=0.166667;ABP=20.3821;AC=2;AF=0.5;AN=4;AO=3;CIGAR=1X;DP=18;DPB=18;DPRA=0;EPP=9.52472;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=581;RO=15;RPL=0;RPP=9.52472;RPPR=35.5824;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=15;SRP=35.5824;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:10,1:10:376:1:40:-0.684349,0,-30.8622 ./.:.:.:.:.:.:.:. 0/1:7:5,2:5:205:2:82:-5.67247,0,-16.7278 ./.:.:.:.:.:.:.:. dDocent_Contig_13773 98 . N A 63.4697 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=68;QR=0;RO=0;RPL=3;RPP=9.52472;RPPR=0;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:68:-6.34642,-0.90309,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_13775 11 . T A 100.417 . AB=0.171429;ABP=35.8306;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X1M1X;DP=98;DPB=98;DPRA=1.66667;EPP=16.0391;EPPR=202.786;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.347826;PAO=0;PQA=0;PQR=0;PRO=0;QA=240;QR=3629;RO=92;RPL=0;RPP=16.0391;RPPR=202.786;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=92;SRP=202.786;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:35:29,6:29:1157:6:240:-11.4396,0,-93.8765 0|0:42:42,0:42:1654:0:0:0,-12.6433,-149.099 0|0:11:11,0:11:428:0:0:0,-3.31133,-38.8688 0|0:10:10,0:10:390:0:0:0,-3.0103,-35.4531 dDocent_Contig_13776 135 . C T 127.307 . AB=0.333333;ABP=7.35324;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=34;DPB=34;DPRA=2.25;EPP=16.0391;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=218;QR=1015;RO=28;RPL=0;RPP=16.0391;RPPR=63.8115;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=63.8115;SRR=28;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:14:14,0:14:502:0:0:0,-4.21442,-45.5129 0/1:18:12,6:12:439:6:218:-14.5543,0,-34.4353 0/0:2:2,0:2:74:0:0:0,-0.60206,-7.02588 ./.:.:.:.:.:.:.:. dDocent_Contig_13777 42 . C T 441.446 . AB=0.3;ABP=27.3308;AC=3;AF=0.375;AN=8;AO=21;CIGAR=1X;DP=73;DPB=73;DPRA=7.77778;EPP=48.6112;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=773;QR=2047;RO=52;RPL=0;RPP=48.6112;RPPR=115.927;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:38:27,11:27:1062:11:404:-25.2634,0,-84.4364 0/1:21:14,7:14:557:7:265:-17.8891,0,-44.1525 0/1:11:8,3:8:308:3:104:-6.38988,0,-24.7686 0/0:3:3,0:3:120:0:0:0,-0.90309,-11.1877 dDocent_Contig_13778 20 . T C 2492.38 . AB=0.0948905;ABP=588.88;AC=4;AF=0.5;AN=8;AO=39;CIGAR=1X1M2X;DP=411;DPB=411;DPRA=0;EPP=87.6977;EPPR=545.878;GTI=0;LEN=1;MEANALT=3.25;MQM=56.8205;MQMR=59.424;NS=4;NUMALT=3;ODDS=0;PAIRED=0.846154;PAIREDR=0.208;PAO=0;PQA=0;PQR=0;PRO=0;QA=1554;QR=9569;RO=250;RPL=0;RPP=87.6977;RPPR=545.878;RPR=39;RUN=1;SAF=39;SAP=87.6977;SAR=0;SRF=250;SRP=545.878;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:148:77,50,9,2:77:2951:50,9,2:1962,360,70:-138.161,0,-227.132,-132.449,-213.292,-371.917,-155.647,-236.49,-368.933,-397.222 0|1:135:79,33,23,0:79:3030:33,23,0:1296,914,0:-82.7831,0,-238.35,-32.0845,-173.802,-273.446,-106.564,-248.284,-280.37,-354.85 0|1:79:59,11,6,3:59:2243:11,6,3:423,239,120:-16.9316,0,-179.611,-15.0081,-163.24,-196.135,-24.8061,-173.037,-188.056,-206.835 0|1:49:35,9,1,4:35:1345:9,1,4:356,41,152:-18.7606,0,-107.449,-25.9112,-106.773,-135.765,-16.8376,-97.6945,-123.603,-125.783 dDocent_Contig_13779 12 . T A 49.8144 . AB=0.153846;ABP=30.0702;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=149;DPB=149;DPRA=0.634146;EPP=11.6962;EPPR=317.874;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=39.9103;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.544828;PAO=0;PQA=0;PQR=0;PRO=0;QA=157;QR=5839;RO=145;RPL=0;RPP=11.6962;RPPR=317.874;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=145;SRP=317.874;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:73:73,0:73:2943:0:0:0,-21.9752,-187.252 0/0:42:42,0:42:1682:0:0:0,-12.6433,-102.035 0/1:26:22,4:22:890:4:157:-6.6804,0,-56.7768 0/0:8:8,0:8:324:0:0:0,-2.40824,-27.3416 dDocent_Contig_13780 37 . G T 562.954 . AB=0.2;ABP=18.6449;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X2M1X;DP=70;DPB=70;DPRA=0;EPP=11.6962;EPPR=94.2121;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=0.714286;PAO=0;PQA=0;PQR=0;PRO=0;QA=163;QR=1653;RO=42;RPL=0;RPP=11.6962;RPPR=94.2121;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:18:7,0,0,11:7:271:0,0,11:0,0,433:-33.9016,-36.0088,-58.2642,-36.0088,-58.2642,-58.2642,0,-22.6446,-22.6446,-19.3333 0|0:18:13,0,2,3:13:508:0,2,3:0,72,122:-6.1777,-10.0911,-51.854,-4.23622,-45.9843,-45.3822,0,-41.7874,-35.9181,-40.8843 0|1:20:13,4,0,3:13:515:4,0,3:163,0,119:-9.54008,0,-41.1834,-13.4535,-42.3875,-55.8371,-3.6629,-32.5923,-46.0422,-45.1391 0|0:14:9,0,0,5:9:359:0,0,5:0,0,199:-14.0739,-16.7832,-46.3492,-16.7832,-46.3492,-46.3492,0,-29.9638,-29.9638,-28.4587 dDocent_Contig_13781 92 . C T 316.986 . AB=0.283333;ABP=27.4756;AC=3;AF=0.375;AN=8;AO=17;CIGAR=1X;DP=67;DPB=67;DPRA=2.85714;EPP=39.9253;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=601;QR=1713;RO=50;RPL=17;RPP=39.9253;RPPR=111.584;RPR=0;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:33:26,7:26:888:7:247:-12.6394,0,-70.2989 0/1:24:16,8:16:547:8:282:-18.4968,0,-42.3294 0/0:7:7,0:7:243:0:0:0,-2.10721,-22.2089 0/1:3:1,2:1:35:2:72:-5.93363,0,-2.59554 dDocent_Contig_13782 141 . A C 58.0379 . AB=0.375;ABP=4.09604;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=43;DPB=43;DPRA=0.685714;EPP=9.52472;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.95;PAO=0;PQA=0;PQR=0;PRO=0;QA=103;QR=1314;RO=40;RPL=0;RPP=9.52472;RPPR=89.8692;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=89.8692;SRR=40;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:8:5,3:5:172:3:103:-7.20173,0,-13.4102 0/0:15:15,0:15:471:0:0:0,-4.51545,-42.692 0/0:9:9,0:9:301:0:0:0,-2.70927,-27.4158 0/0:11:11,0:11:370:0:0:0,-3.31133,-33.6251 dDocent_Contig_13785 32 . T G 172.731 . AB=0.192308;ABP=45.7716;AC=3;AF=0.375;AN=8;AO=10;CIGAR=1M1D6M1X4M1X4M;DP=55;DPB=54.4444;DPRA=5.77778;EPP=24.725;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=395;QR=1768;RO=45;RPL=0;RPP=24.725;RPPR=100.727;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:22:16,6:16:620:6:234:-14.8068,0,-49.5125 0|1:18:15,3:15:594:3:121:-5.86145,0,-48.3818 0|1:12:11,1:11:434:1:40:-0.383319,0,-35.8032 0|0:3:3,0:3:120:0:0:0,-0.90309,-11.1877 dDocent_Contig_13786 149 . C T 60.0051 . AB=0;ABP=0;AC=2;AF=0.25;AN=8;AO=3;CIGAR=1X2M1X1M1X;DP=47;DPB=47;DPRA=0.62069;EPP=9.52472;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=8.67362e-19;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=94;QR=1385;RO=43;RPL=0;RPP=9.52472;RPPR=96.3836;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=96.3836;SRR=43;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:21:21,0:21:703:0:0:0,-6.32163,-63.5861 1|1:2:0,2:0:0:2:60:-5.69915,-0.60206,0 0|0:8:7,0:7:228:0:0:0,-2.10721,-20.6245 0|0:16:15,1:15:454:1:34:0,-1.41757,-37.7556 dDocent_Contig_13787 23 . T C 224.567 . AB=0.297297;ABP=16.2152;AC=1;AF=0.125;AN=8;AO=12;CIGAR=1X;DP=119;DPB=119;DPRA=1.05172;EPP=14.5915;EPPR=235.358;GTI=0;LEN=1;MEANALT=1;MQM=54.25;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.833333;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=457;QR=4140;RO=107;RPL=0;RPP=29.068;RPPR=235.358;RPR=12;RUN=1;SAF=10;SAP=14.5915;SAR=2;SRF=107;SRP=235.358;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:42:42,0:42:1622:0:0:0,-12.6433,-146.227 0/1:37:26,11:26:1005:11:419:-24.1557,0,-79.6185 0/0:16:16,0:16:623:0:0:0,-4.81648,-56.4072 0/0:24:23,1:23:890:1:38:0,-3.42745,-76.6148 dDocent_Contig_13789 19 . G T 105.994 . AB=0.153846;ABP=57.1301;AC=2;AF=0.25;AN=8;AO=8;CIGAR=1X2M1X;DP=88;DPB=88;DPRA=1.44444;EPP=20.3821;EPPR=176.728;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=316;QR=3151;RO=80;RPL=0;RPP=20.3821;RPPR=176.728;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=80;SRP=176.728;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:30:30,0:30:1187:0:0:0,-9.0309,-107.115 0|1:31:25,6:25:969:6:236:-12.2786,0,-78.1837 0|1:21:19,2:19:766:2:80:-1.26995,0,-62.9388 0|0:6:6,0:6:229:0:0:0,-1.80618,-20.9715 dDocent_Contig_13790 46 . G A 1575.31 . AB=0.214286;ABP=102.278;AC=4;AF=0.5;AN=8;AO=30;CIGAR=1X1M1X4M;DP=167;DPB=167;DPRA=0;EPP=68.1545;EPPR=204.957;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.366667;PAIREDR=0.83871;PAO=0;PQA=0;PQR=0;PRO=0;QA=1182;QR=3644;RO=93;RPL=0;RPP=68.1545;RPPR=204.957;RPR=30;RUN=1;SAF=30;SAP=68.1545;SAR=0;SRF=93;SRP=204.957;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:53:34,2,17:34:1336:2,17:79,664:-44.3433,-48.0769,-157.363,0,-103.384,-104.767 0|1:51:24,16,11:24:949:16,11:638,439:-45.3168,0,-73.2787,-16.3875,-41.9403,-91.1719 0|1:36:24,10,2:24:939:10,2:398,79:-25.5502,0,-74.191,-26.2744,-70.7001,-102.872 0|1:27:11,16,0:11:420:16,0:639,0:-49.7186,0,-30.0166,-53.0299,-34.8331,-87.4744 dDocent_Contig_13791 18 . G A 131.622 . AB=0.235294;ABP=23.7032;AC=3;AF=0.375;AN=8;AO=8;CIGAR=1X;DP=41;DPB=41;DPRA=1.61905;EPP=20.3821;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.25;PAIREDR=0.878788;PAO=0;PQA=0;PQR=0;PRO=0;QA=290;QR=1306;RO=33;RPL=0;RPP=20.3821;RPPR=74.6689;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:10,1:10:405:1:37:-0.386499,0,-33.4987 0/1:16:13,3:13:517:3:109:-5.35152,0,-42.0567 0/0:7:7,0:7:279:0:0:0,-2.10721,-25.4788 0/1:7:3,4:3:105:4:144:-11.206,0,-7.6846 dDocent_Contig_13794 93 . A T 237.46 . AB=0.473684;ABP=3.12459;AC=1;AF=0.125;AN=8;AO=10;CIGAR=1X;DP=69;DPB=69;DPRA=1.15625;EPP=24.725;EPPR=131.127;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=0.8;PAIREDR=0.745763;PAO=0;PQA=0;PQR=0;PRO=0;QA=376;QR=2230;RO=59;RPL=6;RPP=3.87889;RPPR=11.2913;RPR=4;RUN=1;SAF=6;SAP=3.87889;SAR=4;SRF=37;SRP=11.2913;SRR=22;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:10,9:10:370:9:339:-25.1439,0,-27.926 0/0:18:17,1:17:645:1:37:0,-1.72071,-54.6861 0/0:26:26,0:26:989:0:0:0,-7.82678,-89.3192 0/0:6:6,0:6:226:0:0:0,-1.80618,-20.7024 dDocent_Contig_13795 102 . N C 71.4705 . AB=0.428571;ABP=3.32051;AC=4;AF=1;AN=4;AO=4;CIGAR=3X4I4X;DP=8;DPB=12.5714;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQM=18;MQMR=0;NS=2;NUMALT=2;ODDS=0;PAIRED=0.75;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=143;QR=0;RO=0;RPL=0;RPP=11.6962;RPPR=0;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. 1|1:7:0,3,3:0:0:3,3:51,108:-6.85906,-3.9835,-3.08041,-2.90138,0,-1.99829 1|1:1:0,0,1:0:0:0,1:0,35:-1.79155,-1.79155,-1.79155,-0.30103,-0.30103,0 .:.:.:.:.:.:.:. dDocent_Contig_13796 7 . C T 424.42 . AB=0.226804;ABP=65.8935;AC=4;AF=0.5;AN=8;AO=22;CIGAR=1X2M1X;DP=97;DPB=97;DPRA=0;EPP=50.7827;EPPR=157.185;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.954545;PAIREDR=0.633803;PAO=0;PQA=0;PQR=0;PRO=0;QA=852;QR=2687;RO=71;RPL=0;RPP=50.7827;RPPR=157.185;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=71;SRP=157.185;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:22:17,5,0:17:643:5,0:195,0:-11.3015,0,-51.5833,-16.419,-53.0884,-69.1205 0|1:50:33,13,4:33:1252:13,4:501,155:-31.2043,0,-98.741,-28.4036,-89.9194,-129.857 0|1:17:15,2,0:15:561:2,0:78,0:-2.28596,0,-45.7123,-6.80141,-46.3143,-52.728 0|1:8:6,2,0:6:231:2,0:78,0:-4.99523,0,-18.7498,-6.80141,-19.3519,-25.7649 dDocent_Contig_13797 25 . G T 69.8823 . AB=0.333333;ABP=5.18177;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=29;DPB=29;DPRA=1.35;EPP=9.52472;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.5385;NS=4;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=0.961538;PAO=0;PQA=0;PQR=0;PRO=0;QA=119;QR=1029;RO=26;RPL=0;RPP=9.52472;RPPR=59.4686;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:6,3:6:235:3:119:-8.38612,0,-18.8109 0/0:8:8,0:8:323:0:0:0,-2.40824,-29.3715 0/0:7:7,0:7:272:0:0:0,-2.10721,-24.8386 0/0:5:5,0:5:199:0:0:0,-1.50515,-18.2884 dDocent_Contig_13799 107 . N A 103.54 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=104;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:69:-6.55266,-0.60206,0 1/1:1:0,1:0:0:1:35:-3.49863,-0.30103,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_13800 10 . T G 1608.14 . AB=0.406897;ABP=13.9276;AC=4;AF=0.5;AN=8;AO=59;CIGAR=1X;DP=145;DPB=145;DPRA=0;EPP=131.127;EPPR=189.757;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.949153;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2339;QR=3166;RO=86;RPL=0;RPP=131.127;RPPR=189.757;RPR=59;RUN=1;SAF=59;SAP=131.127;SAR=0;SRF=86;SRP=189.757;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:66:50,16:50:1842:16:629:-37.0746,0,-146.15 0/1:32:15,17:15:559:17:669:-50.9016,0,-41.0109 0/1:36:15,21:15:534:21:840:-65.0759,0,-37.5486 0/1:11:6,5:6:231:5:201:-15.1596,0,-17.846 dDocent_Contig_13801 8 . T C 275.167 . AB=0.324324;ABP=12.9286;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=2X;DP=50;DPB=50;DPRA=1.42308;EPP=29.068;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=452;QR=1462;RO=38;RPL=0;RPP=29.068;RPPR=85.5263;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. 0|1:19:9,10:9:348:10:382:-29.0158,0,-25.9608 0|0:13:13,0:13:503:0:0:0,-3.91339,-45.6189 0|1:18:16,2:16:611:2:70:-1.22821,0,-49.9098 dDocent_Contig_13805 120 . A G 68.4879 . AB=0.428571;ABP=3.32051;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=47;DPB=47;DPRA=0.525;EPP=9.52472;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=111;QR=1544;RO=44;RPL=0;RPP=9.52472;RPPR=98.5551;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=98.5551;SRR=44;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:7:4,3:4:144:3:111:-8.24671,0,-11.2064 0/0:6:6,0:6:215:0:0:0,-1.80618,-19.6992 0/0:23:23,0:23:814:0:0:0,-6.92369,-73.5813 0/0:11:11,0:11:371:0:0:0,-3.31133,-33.7122 dDocent_Contig_13806 21 . C T 1276.4 . AB=0.60274;ABP=9.70319;AC=4;AF=0.5;AN=8;AO=44;CIGAR=1X;DP=73;DPB=73;DPRA=0;EPP=98.5551;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.75;PAIREDR=0.896552;PAO=0;PQA=0;PQR=0;PRO=0;QA=1729;QR=1153;RO=29;RPL=0;RPP=98.5551;RPPR=65.983;RPR=44;RUN=1;SAF=44;SAP=98.5551;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:4,9:4:164:9:360:-28.8497,0,-11.2365 0/1:30:15,15:15:600:15:586:-44.0376,0,-45.3072 0/1:10:3,7:3:121:7:281:-22.6517,0,-8.2699 0/1:20:7,13:7:268:13:502:-39.4993,0,-18.4556 dDocent_Contig_13807 85 . G A 752.118 . AB=0.288889;ABP=55.2704;AC=4;AF=0.5;AN=8;AO=39;CIGAR=1X4M;DP=135;DPB=135;DPRA=0;EPP=87.6977;EPPR=202.786;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1345;QR=3057;RO=92;RPL=39;RPP=87.6977;RPPR=202.786;RPR=0;RUN=1;SAF=39;SAP=87.6977;SAR=0;SRF=92;SRP=202.786;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:46:34,0,12:34:1134:0,12:0,416:-23.9254,-34.1604,-125.945,0,-92.1272,-88.5149 0|1:44:30,4,10:30:1004:4,10:134,348:-19.2762,-17.4585,-97.5463,0,-70.4492,-78.2913 0|1:24:15,0,9:15:484:0,9:0,309:-20.9183,-25.4338,-64.4535,0,-39.3553,-36.646 0|1:21:13,0,8:13:435:0,8:0,272:-18.4898,-22.4032,-57.6249,0,-35.5595,-33.1512 dDocent_Contig_13808 33 . A G 80.2039 . AB=0.235294;ABP=13.3567;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1X;DP=32;DPB=32;DPRA=0.566667;EPP=11.6962;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=158;QR=1093;RO=28;RPL=0;RPP=11.6962;RPPR=63.8115;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:15:15,0:15:583:0:0:0,-4.51545,-52.8079 0/1:13:12,1:12:473:1:40:-0.0822893,0,-39.0084 ./.:.:.:.:.:.:.:. 0/1:4:1,3:1:37:3:118:-9.7986,0,-2.49371 dDocent_Contig_13810 8 . T A 835.535 . AB=0.376623;ABP=13.1908;AC=5;AF=0.625;AN=8;AO=29;CIGAR=1X1M;DP=77;DPB=77;DPRA=0;EPP=65.983;EPPR=68.1545;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=0.448276;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1103;QR=1161;RO=30;RPL=0;RPP=65.983;RPPR=68.1545;RPR=29;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:18:7,1,2,8:7:273:1,2,8:38,77,310:-23.3641,-22.3554,-44.4968,-19.1548,-38.4814,-40.9953,0,-19.3303,-16.1298,-20.0377 0|1:14:7,2,3,2:7:268:2,3,2:78,116,77:-7.4207,-3.11502,-24.5053,0,-15.5783,-21.0882,-3.20637,-18.7848,-15.6688,-24.5955 0|1:38:15,5,1,16:15:581:5,1,16:190,39,604:-44.985,-33.9175,-80.1473,-46.3375,-78.4897,-93.7708,0,-32.1543,-44.5725,-42.9187 1|1:7:1,0,3,3:1:39:0,3,3:0,116,112:-15.1815,-15.4826,-18.6899,-5.94767,-9.1577,-8.25461,-6.31908,-9.52579,0,-8.6227 dDocent_Contig_13811 16 . A G 155.012 . AB=0.0645161;ABP=54.0749;AC=0;AF=0;AN=8;AO=2;CIGAR=1M2X1M;DP=74;DPB=73.5;DPRA=3.26316;EPP=7.35324;EPPR=38.3795;GTI=0;LEN=1;MEANALT=3;MQM=23.5;MQMR=51.1186;NS=4;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=0.711864;PAO=0;PQA=0;PQR=0;PRO=0;QA=47;QR=2157;RO=59;RPL=0;RPP=7.35324;RPPR=131.127;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=45;SRP=38.3795;SRR=14;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:13:13,0,0,0:13:507:0,0,0:0,0,0:0,-3.91339,-41.8875,-3.91339,-41.8875,-41.8875,-3.91339,-41.8875,-41.8875,-41.8875 0|0:31:23,2,2,4:23:842:2,2,4:69,47,140:-3.25323,-5.89924,-67.659,-7.11293,-65.1819,-68.8552,0,-58.1239,-59.3208,-61.1953 0|0:6:6,0,0,0:6:212:0,0,0:0,0,0:0,-1.80618,-18.2742,-1.80618,-18.2742,-18.2742,-1.80618,-18.2742,-18.2742,-18.2742 0|0:24:17,0,0,7:17:596:0,0,7:0,0,270:-15.6398,-20.7573,-66.6588,-20.7573,-66.6588,-66.6588,0,-46.2518,-46.2518,-44.1446 dDocent_Contig_13812 51 . G A 75.1618 . AB=0;ABP=0;AC=2;AF=0.25;AN=8;AO=2;CIGAR=1X;DP=26;DPB=26;DPRA=0.25;EPP=7.35324;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=76;QR=942;RO=24;RPL=2;RPP=7.35324;RPPR=55.1256;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5,0:5:192:0:0:0,-1.50515,-17.6475 0/0:14:14,0:14:546:0:0:0,-4.21442,-49.4774 0/0:5:5,0:5:204:0:0:0,-1.50515,-18.744 1/1:2:0,2:0:0:2:76:-7.21481,-0.60206,0 dDocent_Contig_13813 115 . C T 43.3461 . AB=0.857143;ABP=10.7656;AC=3;AF=0.375;AN=8;AO=10;CIGAR=1X;DP=49;DPB=49;DPRA=0.289474;EPP=24.725;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=10.5;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=317;QR=1267;RO=39;RPL=0;RPP=24.725;RPPR=87.6977;RPR=10;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=87.6977;SRR=39;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:20:20,0:20:649:0:0:0,-6.0206,-58.7149 0/0:18:18,0:18:583:0:0:0,-5.41854,-52.7762 0/1:7:1,6:1:35:6:207:-3.38996,0,-1.39142 1/1:4:0,4:0:0:4:110:-1.70495,-1.20412,0 dDocent_Contig_13814 89 . C T 126.356 . AB=0.375;ABP=5.18177;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X3M1X;DP=38;DPB=38;DPRA=2.18182;EPP=16.0391;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=209;QR=1057;RO=31;RPL=6;RPP=16.0391;RPPR=70.3259;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:8:7,0:7:242:0:0:0,-2.10721,-21.7684 0|0:9:9,0:9:308:0:0:0,-2.70927,-28.0527 0|1:16:10,6:10:336:6:209:-14.3346,0,-25.749 0|0:5:5,0:5:171:0:0:0,-1.50515,-15.7267 dDocent_Contig_13815 27 . C T 343.605 . AB=0.52;ABP=3.09716;AC=3;AF=0.375;AN=8;AO=13;CIGAR=1X;DP=39;DPB=39;DPRA=0.595238;EPP=31.2394;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=512;QR=1020;RO=25;RPL=0;RPP=31.2394;RPPR=57.2971;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:6,6:6:245:6:244:-18.7265,0,-18.8171 0/0:14:14,0:14:571:0:0:0,-4.21442,-51.7313 0/1:6:1,4:1:40:4:146:-11.6968,0,-2.15576 0/1:7:4,3:4:164:3:122:-9.26528,0,-13.0427 dDocent_Contig_13816 135 . A G 68.6607 . AB=0.235294;ABP=13.3567;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=32;DPB=32;DPRA=3.4;EPP=11.6962;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=148;QR=995;RO=28;RPL=0;RPP=11.6962;RPPR=63.8115;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=63.8115;SRR=28;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:8:8,0:8:282:0:0:0,-2.40824,-25.7196 0/1:17:13,4:13:462:4:148:-8.56446,0,-36.7951 0/0:6:6,0:6:214:0:0:0,-1.80618,-19.6067 0/0:1:1,0:1:37:0:0:0,-0.30103,-3.69783 dDocent_Contig_13817 9 . G T 550.012 . AB=0.372549;ABP=10.206;AC=5;AF=0.625;AN=8;AO=21;CIGAR=1X3M1X;DP=53;DPB=53;DPRA=0;EPP=48.6112;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.875;PAO=0;PQA=0;PQR=0;PRO=0;QA=825;QR=1254;RO=32;RPL=0;RPP=48.6112;RPPR=72.4974;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:2:0,2:0:0:2:79:-7.49763,-0.60206,0 0|1:14:8,6:8:317:6:239:-17.671,0,-24.6825 0|1:20:13,7:13:502:7:268:-18.4624,0,-39.5053 0|1:17:11,6:11:435:6:239:-16.7679,0,-34.3883 dDocent_Contig_13818 107 . N T 217.596 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=7;CIGAR=1X2M1X;DP=7;DPB=7;DPRA=0;EPP=18.2106;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=46;MQMR=0;NS=1;NUMALT=1;ODDS=9.4572;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=240;QR=0;RO=0;RPL=0;RPP=18.2106;RPPR=0;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. 1|1:7:0,7:0:0:7:240:-21.7596,-2.10721,0 .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. dDocent_Contig_13819 14 . C T 59.7761 . AB=0.126984;ABP=79.1497;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=128;DPB=128;DPRA=0.484615;EPP=20.3821;EPPR=263.587;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.1917;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.983333;PAO=0;PQA=0;PQR=0;PRO=0;QA=308;QR=4664;RO=120;RPL=0;RPP=20.3821;RPPR=263.587;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=120;SRP=263.587;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:65:65,0:65:2529:0:0:0,-19.5669,-225.439 ./.:.:.:.:.:.:.:. 0/1:50:44,6:44:1732:6:235:-6.47009,0,-138.631 0/1:13:11,2:11:403:2:73:-3.01668,0,-32.6959 dDocent_Contig_13820 63 . T C 320.479 . AB=0;ABP=0;AC=2;AF=0.25;AN=8;AO=12;CIGAR=1X;DP=57;DPB=57;DPRA=1.71429;EPP=29.068;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=419;QR=1585;RO=45;RPL=12;RPP=29.068;RPPR=100.727;RPR=0;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:15:15,0:15:534:0:0:0,-4.51545,-48.3943 1/1:10:0,10:0:0:10:349:-31.7468,-3.0103,0 0/0:26:24,2:24:853:2:70:0,-1.17938,-70.4438 0/0:6:6,0:6:198:0:0:0,-1.80618,-18.1435 dDocent_Contig_13821 8 . T C 338.74 . AB=0.219512;ABP=59.0449;AC=4;AF=0.5;AN=8;AO=18;CIGAR=1X;DP=82;DPB=82;DPRA=0;EPP=42.0968;EPPR=141.985;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=696;QR=2477;RO=64;RPL=0;RPP=42.0968;RPPR=141.985;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=64;SRP=141.985;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:9,4:9:351:4:156:-10.5039,0,-28.0384 0/1:11:7,4:7:272:4:152:-10.7379,0,-21.5359 0/1:24:22,2:22:852:2:78:-0.178753,0,-69.7777 0/1:34:26,8:26:1002:8:310:-18.0286,0,-80.2562 dDocent_Contig_13824 29 . C G 1797.18 . AB=0.508065;ABP=3.08035;AC=4;AF=0.5;AN=8;AO=63;CIGAR=1X;DP=124;DPB=124;DPRA=0;EPP=139.813;EPPR=135.47;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.984127;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2479;QR=2461;RO=61;RPL=0;RPP=139.813;RPPR=135.47;RPR=63;RUN=1;SAF=63;SAP=139.813;SAR=0;SRF=61;SRP=135.47;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:42:17,25:17:689:25:980:-75.8425,0,-49.6956 0/1:45:22,23:22:881:23:891:-66.9444,0,-66.0501 0/1:26:13,13:13:527:13:526:-39.86,0,-39.9501 0/1:11:9,2:9:364:2:82:-4.46835,0,-29.8126 dDocent_Contig_13825 9 . G C 267.584 . AB=0.183908;ABP=78.5126;AC=2;AF=0.25;AN=8;AO=18;CIGAR=1X;DP=155;DPB=155;DPRA=1.38889;EPP=42.0968;EPPR=300.502;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.9489;NS=4;NUMALT=1;ODDS=0;PAIRED=0.666667;PAIREDR=0.854015;PAO=0;PQA=0;PQR=0;PRO=0;QA=695;QR=5227;RO=137;RPL=0;RPP=42.0968;RPPR=300.502;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=137;SRP=300.502;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:39:31,8:31:1179:8:307:-16.2515,0,-94.6684 0/1:48:40,8:40:1527:8:311:-13.9049,0,-123.252 0/0:38:36,2:36:1374:2:77:0,-4.13,-116.622 0/0:30:30,0:30:1147:0:0:0,-9.0309,-103.53 dDocent_Contig_13826 87 . T G 96.1834 . AB=0.25;ABP=9.52472;AC=4;AF=0.5;AN=8;AO=5;CIGAR=1X;DP=21;DPB=21;DPRA=0.666667;EPP=13.8677;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=160;QR=525;RO=16;RPL=5;RPP=13.8677;RPPR=37.7539;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:7:7,0:7:233:0:0:0,-2.10721,-21.2965 0/1:9:8,1:8:259:1:35:-0.789359,0,-20.9176 1/1:2:0,2:0:0:2:70:-6.6474,-0.60206,0 0/1:3:1,2:1:33:2:55:-4.32057,0,-2.39604 dDocent_Contig_13827 15 . G A 402.595 . AB=0.225806;ABP=23.254;AC=6;AF=0.75;AN=8;AO=15;CIGAR=1X2M1X2M1X;DP=40;DPB=40;DPRA=13;EPP=35.5824;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=572;QR=872;RO=22;RPL=0;RPP=35.5824;RPPR=50.7827;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:17:12,3,2:12:475:3,2:116,75:-5.92286,0,-38.2078,-3.39633,-32.9704,-41.8948 1|1:8:0,8,0:0:0:8,0:301,0:-27.4456,-2.40824,0,-27.4456,-2.40824,-27.4456 0|1:14:10,4,0:10:397:4,0:155,0:-10.1107,0,-31.8751,-13.121,-33.0792,-45.8104 1|1:1:0,0,0:0:0:0,0:0,0:0,0,0,0,0,0 dDocent_Contig_13828 15 . G A 34.5381 . AB=0.222222;ABP=9.04217;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=3X;DP=20;DPB=20;DPRA=1.63636;EPP=7.35324;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=689;RO=18;RPL=0;RPP=7.35324;RPPR=42.0968;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:9:7,2:7:278:2:81:-4.97646,0,-22.6804 0|0:6:6,0:6:219:0:0:0,-1.80618,-20.0616 0|0:5:5,0:5:192:0:0:0,-1.50515,-17.6457 .:.:.:.:.:.:.:. dDocent_Contig_13829 9 . G C 442.591 . AB=0.316667;ABP=20.5268;AC=3;AF=0.375;AN=8;AO=19;CIGAR=1X;DP=64;DPB=64;DPRA=5;EPP=44.2683;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=739;QR=1693;RO=44;RPL=0;RPP=44.2683;RPPR=98.5551;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:19,4:19:730:4:156:-7.4936,0,-59.1075 0/1:22:13,9:13:501:9:349:-25.1481,0,-38.8152 0/1:15:8,6:8:307:6:234:-17.0153,0,-23.5831 0/0:4:4,0:4:155:0:0:0,-1.20412,-14.3254 dDocent_Contig_13831 146 . A G 199.65 . AB=0.380952;ABP=5.59539;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=127;DPB=127;DPRA=0.59434;EPP=20.3821;EPPR=261.416;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=307;QR=4699;RO=119;RPL=0;RPP=20.3821;RPPR=261.416;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=261.416;SRR=119;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:52:52,0:52:2056:0:0:0,-15.6536,-185.23 0/0:14:14,0:14:551:0:0:0,-4.21442,-49.9305 0/0:40:40,0:40:1578:0:0:0,-12.0412,-142.26 0/1:21:13,8:13:514:8:307:-21.6639,0,-40.2798 dDocent_Contig_13832 107 . N A 139.759 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=144;QR=0;RO=0;RPL=0;RPP=11.6962;RPPR=0;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0 1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0 ./.:.:.:.:.:.:.:. dDocent_Contig_13833 15 . T G 277.322 . AB=0.24;ABP=32.3686;AC=1;AF=0.125;AN=8;AO=12;CIGAR=1X;DP=98;DPB=98;DPRA=3.125;EPP=29.068;EPPR=189.757;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.976744;PAO=0;PQA=0;PQR=0;PRO=0;QA=487;QR=3461;RO=86;RPL=0;RPP=29.068;RPPR=189.757;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=86;SRP=189.757;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:50:38,12:38:1535:12:487:-29.1302,0,-123.333 0/0:16:16,0:16:639:0:0:0,-4.81648,-57.8436 0/0:16:16,0:16:645:0:0:0,-4.81648,-58.3821 0/0:16:16,0:16:642:0:0:0,-4.81648,-58.1129 dDocent_Contig_13834 25 . G C 739.77 . AB=0.363636;ABP=10.1169;AC=2;AF=0.25;AN=8;AO=16;CIGAR=1X2M1X1M3I1X;DP=57;DPB=70.8333;DPRA=0;EPP=37.7539;EPPR=33.4109;GTI=0;LEN=1;MEANALT=3.33333;MQM=60;MQMR=60;NS=4;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=609;QR=543;RO=14;RPL=0;RPP=37.7539;RPPR=33.4109;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=14;SRP=33.4109;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:13:6,1,0,3,3:6:225:1,0,3,3:37,0,112,123:-8.28513,-7.08067,-25.2005,-10.0913,-25.5015,-28.5141,-0.931139,-16.3341,-19.3461,-18.443,0,-15.417,-18.4301,-9.25985,-17.527 1|0:20:1,2,8,6,0:1:40:2,8,6,0:59,306,226,0:-40.0481,-35.6524,-38.3465,-15.2311,-13.8379,-16.1209,-21.827,-20.4313,0,-23.3181,-40.3491,-38.9485,-18.5292,-25.1243,-43.6456 1|0:11:2,0,6,0,3:2:82:0,6,0,3:0,227,0,120:-21.0881,-21.6902,-28.4628,-3.09486,-9.86715,-8.06097,-21.6902,-28.4628,-9.86715,-28.4628,-11.8098,-18.5858,0,-18.5858,-17.6827 0|0:13:5,0,2,2,4:5:196:0,2,2,4:0,76,73,163:-11.941,-13.4462,-29.5646,-7.21637,-23.3335,-22.7314,-7.49012,-23.605,-17.3753,-23.0029,0,-16.1283,-9.89621,-10.1692,-14.9242 dDocent_Contig_13835 13 . C T 483.651 . AB=0.5;ABP=3.0103;AC=3;AF=0.375;AN=8;AO=18;CIGAR=1X3M1D5M;DP=45;DPB=43.2;DPRA=1.33333;EPP=42.0968;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=58.5;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.814815;PAO=0;PQA=0;PQR=0;PRO=0;QA=708;QR=1060;RO=27;RPL=0;RPP=42.0968;RPPR=61.6401;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:6:3,3:3:120:3:114:-8.8253,0,-9.38151 0|1:28:14,14:14:545:14:554:-41.5354,0,-40.9605 0|0:9:9,0:9:355:0:0:0,-2.70927,-32.3129 0|1:2:1,1:1:40:1:40:-3.39362,0,-3.39362 dDocent_Contig_13836 25 . T C 113.143 . AB=0.166667;ABP=43.5445;AC=2;AF=0.25;AN=8;AO=12;CIGAR=1X;DP=136;DPB=136;DPRA=8.73333;EPP=29.068;EPPR=272.273;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=488;QR=4938;RO=124;RPL=0;RPP=29.068;RPPR=272.273;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=124;SRP=272.273;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:89:84,5:84:3346:5:203:0,-8.13882,-282.532 0/1:31:25,6:25:987:6:244:-13.0067,0,-79.7918 0/0:5:5,0:5:204:0:0:0,-1.50515,-18.744 0/1:11:10,1:10:401:1:41:-0.783237,0,-33.1366 dDocent_Contig_13837 14 . T C 1010.94 . AB=0.391753;ABP=12.8827;AC=4;AF=0.5;AN=8;AO=38;CIGAR=1X;DP=97;DPB=97;DPRA=0;EPP=85.5263;EPPR=131.127;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.921053;PAIREDR=0.881356;PAO=0;PQA=0;PQR=0;PRO=0;QA=1514;QR=2337;RO=59;RPL=0;RPP=85.5263;RPPR=131.127;RPR=38;RUN=1;SAF=38;SAP=85.5263;SAR=0;SRF=59;SRP=131.127;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:34:19,15:19:759:15:602:-44.2842,0,-58.3979 0/1:17:9,8:9:358:8:317:-23.7778,0,-27.4651 0/1:33:22,11:22:874:11:441:-30.1108,0,-69.0368 0/1:13:9,4:9:346:4:154:-10.3195,0,-27.5805 dDocent_Contig_13839 12 . G A 378.449 . AB=0.4;ABP=6.05036;AC=2;AF=0.25;AN=8;AO=14;CIGAR=1X;DP=37;DPB=37;DPRA=17.5;EPP=33.4109;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=567;QR=917;RO=23;RPL=0;RPP=33.4109;RPPR=52.9542;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:14,9:14:557:9:364:-26.2011,0,-43.5484 0/1:12:7,5:7:278:5:203:-15.0407,0,-21.7762 0/0:1:1,0:1:41:0:0:0,-0.30103,-4.09457 0/0:1:1,0:1:41:0:0:0,-0.30103,-4.09457 dDocent_Contig_13840 13 . G A 158.316 . AB=0.304348;ABP=10.6577;AC=2;AF=0.25;AN=8;AO=7;CIGAR=1X;DP=48;DPB=48;DPRA=0.92;EPP=18.2106;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.122;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.902439;PAO=0;PQA=0;PQR=0;PRO=0;QA=282;QR=1648;RO=41;RPL=0;RPP=18.2106;RPPR=92.0407;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:15:15,0:15:599:0:0:0,-4.51545,-54.2491 0/0:10:10,0:10:408:0:0:0,-3.0103,-37.0301 0/1:14:9,5:9:355:5:202:-14.3471,0,-28.0505 0/1:9:7,2:7:286:2:80:-4.8823,0,-23.4055 dDocent_Contig_13841 199 . T A 74.9114 . AB=0.0909091;ABP=19.0002;AC=3;AF=0.5;AN=6;AO=3;CIGAR=2X;DP=20;DPB=20;DPRA=0.928571;EPP=9.52472;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=116;QR=653;RO=17;RPL=3;RPP=9.52472;RPPR=39.9253;RPR=0;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=39.9253;SRR=17;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:11:10,1:10:383:1:39:-0.585235,0,-31.5142 1|1:2:0,2:0:0:2:77:-7.30914,-0.60206,0 .:.:.:.:.:.:.:. 0|0:7:7,0:7:270:0:0:0,-2.10721,-24.6657 dDocent_Contig_13842 44 . C T 703.883 . AB=0.512821;ABP=3.06598;AC=5;AF=0.625;AN=8;AO=24;CIGAR=1X;DP=43;DPB=43;DPRA=0;EPP=55.1256;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=956;QR=766;RO=19;RPL=0;RPP=55.1256;RPPR=44.2683;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:7,9:7:283:9:368:-28.6689,0,-21.0265 0/1:11:6,5:6:238:5:194:-14.5163,0,-18.4819 0/1:12:6,6:6:245:6:230:-17.4512,0,-18.8171 1/1:4:0,4:0:0:4:164:-15.1499,-1.20412,0 dDocent_Contig_13843 75 . G A 72.6396 . AB=0.307692;ABP=7.18621;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=47;DPB=47;DPRA=1.14706;EPP=11.6962;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=8.67362e-19;PAIRED=0;PAIREDR=0.953488;PAO=0;PQA=0;PQR=0;PRO=0;QA=136;QR=1471;RO=43;RPL=4;RPP=11.6962;RPPR=96.3836;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:9,4:9:298:4:136:-8.66183,0,-23.2288 0/0:19:19,0:19:661:0:0:0,-5.71957,-59.8153 0/0:11:11,0:11:376:0:0:0,-3.31133,-34.1703 0/0:4:4,0:4:136:0:0:0,-1.20412,-12.5758 dDocent_Contig_13844 28 . C T 45.5397 . AB=0.235294;ABP=13.3567;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=63;DPB=63;DPRA=1.1087;EPP=11.6962;EPPR=131.127;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.847458;PAO=0;PQA=0;PQR=0;PRO=0;QA=123;QR=2359;RO=59;RPL=0;RPP=11.6962;RPPR=131.127;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=59;SRP=131.127;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:23:23,0:23:921:0:0:0,-6.92369,-83.1948 0/0:14:14,0:14:567:0:0:0,-4.21442,-51.3725 0/1:17:13,4:13:526:4:123:-6.25293,0,-42.5701 0/0:9:9,0:9:345:0:0:0,-2.70927,-31.401 dDocent_Contig_13845 152 . C T 37.4567 . AB=0.176471;ABP=18.4661;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=44;DPB=44;DPRA=1.88889;EPP=9.52472;EPPR=10.8276;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=42.8;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.4;PAO=0;PQA=0;PQR=0;PRO=0;QA=110;QR=1449;RO=40;RPL=0;RPP=9.52472;RPPR=45.5712;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=8;SRP=34.2795;SRR=32;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:14,3:14:503:3:110:-5.14349,0,-34.7271 0/0:10:10,0:10:364:0:0:0,-3.0103,-31.199 0/0:12:11,0:11:412:0:0:0,-3.31133,-21.153 0/0:5:5,0:5:170:0:0:0,-1.50515,-15.6319 dDocent_Contig_13846 25 . G A 7659.74 . AB=0.862816;ABP=319.724;AC=4;AF=0.5;AN=8;AO=239;CIGAR=1X;DP=277;DPB=277;DPRA=0;EPP=521.992;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=9501;QR=1505;RO=38;RPL=0;RPP=521.992;RPPR=85.5263;RPR=239;RUN=1;SAF=239;SAP=521.992;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:80:7,73:7:276:73:2891:-236.211,0,-1.12619 0/1:128:17,111:17:690:111:4428:-359.934,0,-23.8964 0/1:41:11,30:11:428:30:1184:-94.4952,0,-26.526 0/1:28:3,25:3:111:25:998:-81.6867,0,-1.9229 dDocent_Contig_13848 194 . C T 839.09 . AB=0.555556;ABP=3.73412;AC=5;AF=0.625;AN=8;AO=26;CIGAR=1X;DP=54;DPB=54;DPRA=0.791667;EPP=59.4686;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1026;QR=1103;RO=28;RPL=26;RPP=59.4686;RPPR=63.8115;RPR=0;RUN=1;SAF=0;SAP=59.4686;SAR=26;SRF=0;SRP=63.8115;SRR=28;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:16:16,0:16:628:0:0:0,-4.81648,-56.8534 1/1:7:0,7:0:0:7:283:-25.8436,-2.10721,0 1/1:4:0,4:0:0:4:162:-14.967,-1.20412,0 0/1:27:12,15:12:475:15:581:-44.4964,0,-34.9689 dDocent_Contig_13851 7 . C T 744.966 . AB=0.392857;ABP=5.80219;AC=6;AF=0.75;AN=8;AO=25;CIGAR=1X;DP=42;DPB=42;DPRA=0;EPP=57.2971;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=55.4;MQMR=59.5882;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=947;QR=651;RO=17;RPL=0;RPP=57.2971;RPPR=39.9253;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:10,3:10:385:3:105:-5.86442,0,-31.0933 0/1:15:7,8:7:266:8:307:-23.2052,0,-19.7732 1/1:10:0,10:0:0:10:385:-34.9694,-3.0103,0 1/1:4:0,4:0:0:4:150:-13.8555,-1.20412,0 dDocent_Contig_13852 189 . A T 54.4134 . AB=0.148148;ABP=32.0437;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=49;DPB=49;DPRA=3.68182;EPP=11.6962;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=162;QR=1788;RO=45;RPL=4;RPP=11.6962;RPPR=100.727;RPR=0;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=100.727;SRR=45;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:23,4:23:935:4:162:-6.83894,0,-76.3232 0/0:16:16,0:16:608:0:0:0,-4.81648,-55.0377 0/0:4:4,0:4:163:0:0:0,-1.20412,-15.0584 0/0:2:2,0:2:82:0:0:0,-0.60206,-7.77968 dDocent_Contig_13853 35 . C G 44.8178 . AB=0.4;ABP=3.44459;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X;DP=34;DPB=34;DPRA=0.517241;EPP=7.35324;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=1217;RO=32;RPL=0;RPP=7.35324;RPPR=72.4974;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:20:20,0:20:741:0:0:0,-6.0206,-67.0012 0/0:3:3,0:3:122:0:0:0,-0.90309,-11.3725 0/1:5:3,2:3:117:2:81:-6.18058,0,-9.40414 0/0:6:6,0:6:237:0:0:0,-1.80618,-21.7033 dDocent_Contig_13854 98 . N C 65.5375 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=69;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:69:-6.55266,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_13855 79 . G A 198.871 . AB=0.409091;ABP=4.58955;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=27;DPB=27;DPRA=2.2;EPP=22.5536;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.888889;PAIREDR=0.777778;PAO=0;PQA=0;PQR=0;PRO=0;QA=320;QR=636;RO=18;RPL=9;RPP=22.5536;RPPR=42.0968;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:8:7,1:7:251:1:36:-1.19004,0,-20.5296 0/1:14:6,8:6:213:8:284:-21.6891,0,-15.302 0/0:5:5,0:5:172:0:0:0,-1.50515,-15.8181 ./.:.:.:.:.:.:.:. dDocent_Contig_13856 71 . G A 47.8865 . AB=0.172414;ABP=30.0414;AC=2;AF=0.25;AN=8;AO=6;CIGAR=1X;DP=60;DPB=60;DPRA=3.66667;EPP=16.0391;EPPR=120.27;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.574074;PAO=0;PQA=0;PQR=0;PRO=0;QA=218;QR=2087;RO=54;RPL=6;RPP=16.0391;RPPR=120.27;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:26:25,1:25:950:1:38:0,-4.02951,-82.0063 0/1:18:15,3:15:590:3:106:-4.47056,0,-48.0195 0/1:11:9,2:9:349:2:74:-3.71353,0,-28.4536 0/0:5:5,0:5:198:0:0:0,-1.50515,-18.1975 dDocent_Contig_13857 28 . T A 90.387 . AB=0.208333;ABP=20.744;AC=2;AF=0.25;AN=8;AO=5;CIGAR=1X;DP=32;DPB=32;DPRA=3;EPP=13.8677;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=193;QR=1087;RO=27;RPL=0;RPP=13.8677;RPPR=61.6401;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:8,4:8:325:4:152:-10.4332,0,-26.0073 0/1:12:11,1:11:441:1:41:-0.482207,0,-36.4314 0/0:5:5,0:5:198:0:0:0,-1.50515,-18.1965 0/0:3:3,0:3:123:0:0:0,-0.90309,-11.4648 dDocent_Contig_13858 8 . T A 167.359 . AB=0.333333;ABP=8.07707;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=63;DPB=63;DPRA=1.5;EPP=18.2106;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=271;QR=2122;RO=56;RPL=0;RPP=18.2106;RPPR=124.613;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:34:34,0:34:1315:0:0:0,-10.235,-118.637 0/1:21:14,7:14:497:7:271:-18.4347,0,-38.7308 0/0:5:5,0:5:194:0:0:0,-1.50515,-17.8328 0/0:3:3,0:3:116:0:0:0,-0.90309,-10.8177 dDocent_Contig_13859 88 . C G 41.2602 . AB=0.4;ABP=3.44459;AC=3;AF=0.375;AN=8;AO=2;CIGAR=2X1M1X1M1X2M5I1M;DP=27;DPB=28.2222;DPRA=0.681818;EPP=7.35324;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=4;PQA=100;PQR=0;PRO=0;QA=73;QR=664;RO=20;RPL=2;RPP=7.35324;RPPR=46.4397;RPR=0;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:5:3,2:3:104:2:73:-5.42615,0,-8.19794 0|0:12:9,0:9:293:0:0:0,-2.70927,-26.3842 0|0:8:8,0:8:267:0:0:0,-2.40824,-24.078 1|1:2:0,0:0:0:0:0:0,0,0 dDocent_Contig_13860 89 . C A 34.4343 . AB=0.4;ABP=3.44459;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X;DP=62;DPB=62;DPRA=0.263158;EPP=7.35324;EPPR=133.299;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=70;QR=2016;RO=60;RPL=2;RPP=7.35324;RPPR=133.299;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:24:24,0:24:825:0:0:0,-7.22472,-74.5668 0/0:24:24,0:24:774:0:0:0,-7.22472,-69.9593 0/1:5:3,2:3:104:2:70:-5.14225,0,-8.19794 0/0:9:9,0:9:313:0:0:0,-2.70927,-28.507 dDocent_Contig_13861 10 . T C 163.023 . AB=0.172414;ABP=30.0414;AC=3;AF=0.375;AN=8;AO=7;CIGAR=1X;DP=51;DPB=51;DPRA=1.55;EPP=18.2106;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.857143;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=285;QR=1740;RO=44;RPL=0;RPP=18.2106;RPPR=98.5551;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:24,5:24:939:5:204:-10.0142,0,-76.0799 0/0:15:15,0:15:607:0:0:0,-4.51545,-54.9677 1/1:2:0,2:0:0:2:81:-7.68573,-0.60206,0 0/0:5:5,0:5:194:0:0:0,-1.50515,-17.8305 dDocent_Contig_13862 23 . G A 46.5563 . AB=0.142857;ABP=34.0313;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=102;DPB=102;DPRA=1.08163;EPP=13.8677;EPPR=213.643;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.4;PAIREDR=0.979381;PAO=0;PQA=0;PQR=0;PRO=0;QA=198;QR=3847;RO=97;RPL=0;RPP=13.8677;RPPR=213.643;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=97;SRP=213.643;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:42:42,0:42:1679:0:0:0,-12.6433,-151.334 0/0:25:24,1:24:955:1:38:0,-3.72848,-82.4529 0/1:28:24,4:24:927:4:160:-6.35459,0,-75.2943 0/0:7:7,0:7:286:0:0:0,-2.10721,-26.1148 dDocent_Contig_13863 9 . C T 75.0292 . AB=0.151515;ABP=72.629;AC=2;AF=0.25;AN=8;AO=12;CIGAR=1X;DP=109;DPB=109;DPRA=6.93333;EPP=29.068;EPPR=213.643;GTI=0;LEN=1;MEANALT=1;MQM=37.75;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=0.25;PAIREDR=0.57732;PAO=0;PQA=0;PQR=0;PRO=0;QA=462;QR=3738;RO=97;RPL=0;RPP=29.068;RPPR=213.643;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=97;SRP=213.643;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:42:37,5:37:1432:5:193:-0.18321,0,-116.514 0/1:24:19,5:19:723:5:191:-9.2002,0,-58.1738 0/0:38:36,2:36:1392:2:78:0,-5.60674,-119.73 0/0:5:5,0:5:191:0:0:0,-1.50515,-17.5585 dDocent_Contig_13864 16 . C T 122.491 . AB=0.15625;ABP=35.8538;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X3M1X;DP=37;DPB=37;DPRA=0;EPP=13.8677;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=199;QR=1146;RO=29;RPL=0;RPP=13.8677;RPPR=65.983;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:18:16,2,0:16:627:2,0:82,0:-2.36114,0,-51.3461,-7.17762,-51.9481,-58.7183 0|1:14:11,3,0:11:439:3,0:117,0:-6.69416,0,-35.6515,-10.0055,-36.5546,-46.1685 0|0:5:2,0,3:2:80:0,3:0,109:-8.65784,-9.2599,-15.8647,0,-6.98973,-6.08664 .:.:.:.:.:.:.:. dDocent_Contig_13865 123 . A G 30.9512 . AB=0.285714;ABP=5.80219;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=23;DPB=23;DPRA=0.875;EPP=7.35324;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=8.67362e-19;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=74;QR=757;RO=21;RPL=0;RPP=7.35324;RPPR=48.6112;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=48.6112;SRR=21;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:8:8,0:8:295:0:0:0,-2.40824,-26.9033 0/1:7:5,2:5:187:2:74:-4.91867,0,-15.0858 0/0:8:8,0:8:275:0:0:0,-2.40824,-25.0808 ./.:.:.:.:.:.:.:. dDocent_Contig_13866 45 . T G 397.769 . AB=0.268657;ABP=34.1563;AC=2;AF=0.25;AN=8;AO=19;CIGAR=1X;DP=147;DPB=147;DPRA=5.11111;EPP=44.2683;EPPR=280.959;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=737;QR=5079;RO=128;RPL=0;RPP=44.2683;RPPR=280.959;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=128;SRP=280.959;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:71:70,1:70:2771:1:41:0,-17.2786,-245.402 0/1:42:28,14:28:1116:14:545:-36.7453,0,-88.075 0/1:25:21,4:21:837:4:151:-6.42957,0,-68.117 0/0:9:9,0:9:355:0:0:0,-2.70927,-32.3075 dDocent_Contig_13867 16 . G C 39.7356 . AB=0.285714;ABP=5.80219;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X;DP=31;DPB=31;DPRA=0.875;EPP=7.35324;EPPR=57.5966;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.965517;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=1182;RO=29;RPL=0;RPP=7.35324;RPPR=65.983;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=28;SRP=57.5966;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:10:10,0:10:409:0:0:0,-3.0103,-37.1706 0/1:7:5,2:5:205:2:82:-5.67247,0,-16.7278 0/0:7:7,0:7:285:0:0:0,-2.10721,-26.0244 0/0:7:7,0:7:283:0:0:0,-2.10721,-25.8434 dDocent_Contig_13868 148 . G C 177.571 . AB=0.176471;ABP=18.4661;AC=3;AF=0.5;AN=6;AO=7;CIGAR=1X;DP=34;DPB=34;DPRA=0.807692;EPP=18.2106;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=263;QR=1036;RO=27;RPL=0;RPP=18.2106;RPPR=61.6401;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=61.6401;SRR=27;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:13:13,0:13:504:0:0:0,-3.91339,-45.7087 1/1:4:0,4:0:0:4:156:-14.4173,-1.20412,0 0/1:17:14,3:14:532:3:107:-4.86242,0,-43.1043 ./.:.:.:.:.:.:.:. dDocent_Contig_13869 36 . G A 1121.1 . AB=0.616667;ABP=10.1038;AC=5;AF=0.625;AN=8;AO=37;CIGAR=1X3M;DP=60;DPB=60;DPRA=0;EPP=83.3548;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1.75;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1470;QR=740;RO=19;RPL=0;RPP=83.3548;RPPR=44.2683;RPR=37;RUN=1;SAF=37;SAP=83.3548;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:15:7,1,7:7:279:1,7:41,279:-20.8584,-19.5801,-42.2554,0,-19.581,-20.8593 0|1:24:9,2,13:9:358:2,13:77,514:-39.594,-35.9826,-64.8585,0,-23.1675,-25.5739 0|1:16:3,0,13:3:103:0,13:0,514:-41.7894,-42.6925,-51.0418,0,-8.7021,-4.78871 1|1:5:0,1,4:0:0:1,4:41,163:-17.2389,-13.8543,-13.5533,-3.79354,0,-2.58942 dDocent_Contig_13870 125 . G A 390.51 . AB=0.529412;ABP=3.13803;AC=4;AF=0.5;AN=8;AO=16;CIGAR=1X3M2X;DP=31;DPB=31;DPRA=1.14286;EPP=37.7539;EPPR=33.4109;GTI=0;LEN=1;MEANALT=1.33333;MQM=54.3125;MQMR=55.2857;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=0;PAIREDR=0.857143;PAO=0;PQA=0;PQR=0;PRO=0;QA=532;QR=468;RO=14;RPL=0;RPP=37.7539;RPPR=33.4109;RPR=16;RUN=1;SAF=0;SAP=37.7539;SAR=16;SRF=0;SRP=33.4109;SRR=14;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:4:2,2:2:69:2:69:-4.89707,0,-3.79037 1|1:7:0,7:0:0:7:233:-20.4285,-2.10721,0 0|1:13:5,7:5:172:7:230:-17.1215,0,-11.9137 0|0:7:7,0:7:227:0:0:0,-2.10721,-20.7472 dDocent_Contig_13871 30 . G A 862.243 . AB=0.4375;ABP=5.18177;AC=5;AF=0.625;AN=8;AO=28;CIGAR=1X4M;DP=64;DPB=64;DPRA=0;EPP=63.8115;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1.75;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1121;QR=1115;RO=28;RPL=0;RPP=63.8115;RPPR=63.8115;RPR=28;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:17:0,2,15:0:0:2,15:67,594:-54.7013,-49.2823,-48.6802,-5.76108,0,-1.24563 0|1:19:10,5,4:10:400:5,4:195,163:-13.0074,0,-31.4392,-2.56262,-19.4949,-34.3148 0|1:21:17,1,3:17:674:1,3:35,120:-4.80501,-7.08721,-62.2622,0,-52.6775,-54.6196 0|1:7:1,0,6:1:41:0,6:0,244:-20.2316,-20.5326,-23.9172,0,-3.79354,-1.98736 dDocent_Contig_13872 14 . A G 395.081 . AB=0.253012;ABP=46.9892;AC=3;AF=0.375;AN=8;AO=22;CIGAR=1X;DP=97;DPB=97;DPRA=0;EPP=50.7827;EPPR=165.871;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=0;PAIREDR=0.573333;PAO=0;PQA=0;PQR=0;PRO=0;QA=805;QR=3017;RO=75;RPL=0;RPP=50.7827;RPPR=165.871;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=75;SRP=165.871;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:19,9:19:763:9:303:-19.1662,0,-60.5638 0/1:32:24,8:24:968:8:319:-19.4434,0,-77.7861 0/1:23:19,4:19:760:4:143:-6.29576,0,-61.7964 0/0:14:13,1:13:526:1:40:0,-0.218741,-43.6895 dDocent_Contig_13873 46 . C G 97.8735 . AB=0.277778;ABP=10.7311;AC=2;AF=0.25;AN=8;AO=5;CIGAR=1X;DP=34;DPB=34;DPRA=1.125;EPP=13.8677;EPPR=57.5966;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.965517;PAO=0;PQA=0;PQR=0;PRO=0;QA=198;QR=1131;RO=29;RPL=0;RPP=13.8677;RPPR=57.5966;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5,0:5:204:0:0:0,-1.50515,-18.744 0/0:11:11,0:11:437:0:0:0,-3.31133,-38.7397 0/1:15:11,4:11:426:4:158:-10.0839,0,-34.1717 0/1:3:2,1:2:64:1:40:-3.09259,0,-5.1727 dDocent_Contig_13874 74 . C T 688.485 . AB=0.315789;ABP=8.61041;AC=1;AF=0.125;AN=8;AO=6;CIGAR=2X;DP=61;DPB=61;DPRA=2.375;EPP=16.0391;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=208;QR=1145;RO=33;RPL=6;RPP=16.0391;RPPR=74.6689;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:26:4,0,22:4:140:0,22:0,738:-58.9061,-60.1102,-71.5034,0,-11.7408,-5.11815 0|0:13:13,0,0:13:449:0,0:0,0:0,-3.91339,-40.7407,-3.91339,-40.7407,-40.7407 0|1:19:13,6,0:13:452:6,0:208,0:-13.3401,0,-35.2927,-17.2535,-37.0989,-54.0055 0|0:3:3,0,0:3:104:0,0:0,0:0,-0.90309,-9.70309,-0.90309,-9.70309,-9.70309 dDocent_Contig_13875 9 . C G 346.951 . AB=0.483871;ABP=3.08035;AC=3;AF=0.5;AN=6;AO=15;CIGAR=2X;DP=31;DPB=31;DPRA=0;EPP=35.5824;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=49.6667;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.733333;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=596;QR=624;RO=16;RPL=0;RPP=35.5824;RPPR=37.7539;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:11:6,5:6:237:5:197:-14.7951,0,-18.3922 0|1:15:8,7:8:309:7:280:-15.8326,0,-23.6568 0|1:5:2,3:2:78:3:119:-9.59024,0,-5.89815 .:.:.:.:.:.:.:. dDocent_Contig_13877 19 . C T 187.916 . AB=0.257143;ABP=20.9405;AC=3;AF=0.375;AN=8;AO=9;CIGAR=1X;DP=49;DPB=49;DPRA=0.833333;EPP=22.5536;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.777778;PAIREDR=0.55;PAO=0;PQA=0;PQR=0;PRO=0;QA=365;QR=1596;RO=40;RPL=0;RPP=22.5536;RPPR=89.8692;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:14:14,0:14:548:0:0:0,-4.21442,-49.6555 0/1:6:5,1:5:205:1:40:-2.1895,0,-17.0288 0/1:9:8,1:8:325:1:41:-1.3853,0,-26.9098 0/1:20:13,7:13:518:7:284:-19.9128,0,-40.9457 dDocent_Contig_13878 12 . A T 57.1741 . AB=0.210526;ABP=16.8392;AC=2;AF=0.25;AN=8;AO=4;CIGAR=1X;DP=32;DPB=32;DPRA=1.46154;EPP=11.6962;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=50.75;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=158;QR=1111;RO=28;RPL=0;RPP=11.6962;RPPR=63.8115;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:8:8,0:8:318:0:0:0,-2.40824,-28.9823 0/0:5:5,0:5:203:0:0:0,-1.50515,-18.6528 0/1:14:11,3:11:429:3:117:-6.65732,0,-34.7449 0/1:5:4,1:4:161:1:41:-2.41843,0,-13.3701 dDocent_Contig_13879 9 . C T 863.138 . AB=0.2;ABP=30.3709;AC=0;AF=0;AN=8;AO=7;CIGAR=4M1X1M1X1M;DP=114;DPB=107.5;DPRA=0;EPP=18.2106;EPPR=122.441;GTI=0;LEN=1;MEANALT=4;MQM=18;MQMR=57.9818;NS=4;NUMALT=4;ODDS=0;PAIRED=0;PAIREDR=0.618182;PAO=0;PQA=0;PQR=0;PRO=0;QA=126;QR=2111;RO=55;RPL=0;RPP=18.2106;RPPR=122.441;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:35:13,5,9,7,0:13:501:5,9,7,0:193,349,126,0:-24.7809,-18.8309,-58.3419,0,-31.2045,-38.356,-21.3938,-52.5421,-33.7585,-60.2821,-28.6942,-59.847,-41.0652,-62.3893,-69.7063 0|0:21:14,0,6,0,0:14:534:0,6,0,0:0,220,0,0:-13.4819,-17.6963,-61.52,0,-43.85,-42.0438,-17.6963,-61.52,-43.85,-61.52,-17.6963,-61.52,-43.85,-61.52,-61.52 0|0:38:20,3,13,0,2:20:767:3,13,0,2:117,436,0,66:-27.8278,-25.7122,-87.5464,0,-54.6216,-58.8371,-33.8484,-88.4494,-62.7505,-96.5815,-29.0549,-83.6565,-57.9603,-91.7882,-91.1861 0|0:20:8,0,11,0,1:8:309:0,11,0,1:0,390,0,33:-27.6213,-30.0295,-55.4001,0,-25.4259,-22.1145,-30.0295,-55.4001,-25.4259,-55.4001,-27.6344,-53.0048,-23.0372,-53.0048,-52.7038 dDocent_Contig_13880 15 . G A 85.3985 . AB=0.208333;ABP=20.744;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=90;DPB=90;DPRA=1.30769;EPP=18.2106;EPPR=174.661;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=57.3614;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.891566;PAO=0;PQA=0;PQR=0;PRO=0;QA=256;QR=3323;RO=83;RPL=0;RPP=18.2106;RPPR=183.243;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=82;SRP=174.661;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:23:23,0:23:919:0:0:0,-6.92369,-80.8896 0/0:27:25,2:25:1012:2:66:0,-1.8631,-85.109 0/0:16:16,0:16:649:0:0:0,-4.81648,-58.1865 0/1:24:19,5:19:743:5:190:-10.2388,0,-57.7461 dDocent_Contig_13881 15 . C A 98.4014 . AB=0.230769;ABP=11.1951;AC=3;AF=0.5;AN=6;AO=4;CIGAR=1X;DP=23;DPB=23;DPRA=0.777778;EPP=11.6962;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=161;QR=772;RO=19;RPL=0;RPP=11.6962;RPPR=44.2683;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:9:9,0:9:367:0:0:0,-2.70927,-33.3953 0/1:13:10,3:10:405:3:121:-7.3666,0,-32.8968 1/1:1:0,1:0:0:1:40:-3.99568,-0.30103,0 ./.:.:.:.:.:.:.:. dDocent_Contig_13882 13 . C G 853.443 . AB=0.392405;ABP=10.954;AC=2;AF=0.25;AN=8;AO=31;CIGAR=1X6M;DP=106;DPB=106;DPRA=0.975309;EPP=70.3259;EPPR=146.327;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=4;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=0.969697;PAO=0;PQA=0;PQR=0;PRO=0;QA=1220;QR=2584;RO=66;RPL=0;RPP=70.3259;RPPR=146.327;RPR=31;RUN=1;SAF=31;SAP=70.3259;SAR=0;SRF=66;SRP=146.327;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:14:7,0,3,0,4:7:278:0,3,0,4:0,121,0,157:-10.7988,-12.906,-35.7932,-2.9272,-25.8173,-24.9142,-12.906,-35.7932,-25.8173,-35.7932,0,-22.8829,-12.9068,-22.8829,-21.6788 0|0:27:23,2,0,2,0:23:904:2,0,2,0:80,0,76,0:0,-0.323607,-74.09,-6.92369,-74.6921,-81.2829,-0.700586,-68.4601,-75.0508,-74.4488,-6.92369,-74.6921,-81.2829,-75.0508,-81.2829 0|1:51:25,0,26,0,0:25:985:0,26,0,0:0,1020,0,0:-76.7366,-84.2623,-165.298,0,-81.4287,-73.6019,-84.2623,-165.298,-81.4287,-165.298,-84.2623,-165.298,-81.4287,-165.298,-165.298 0|1:14:11,1,2,0,0:11:417:1,2,0,0:38,79,0,0:-3.19917,-3.39895,-37.2716,0,-31.0696,-33.5841,-6.5105,-37.5726,-34.1861,-40.689,-6.5105,-37.5726,-34.1861,-40.689,-40.689 dDocent_Contig_13883 83 . A T 235.376 . AB=0.407407;ABP=5.02092;AC=2;AF=0.25;AN=8;AO=11;CIGAR=1X;DP=40;DPB=40;DPRA=2.07692;EPP=26.8965;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=382;QR=996;RO=29;RPL=11;RPP=26.8965;RPPR=65.983;RPR=0;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:5:2,3:2:70:3:105:-8.29101,0,-5.14225 0/1:22:14,8:14:486:8:277:-18.6444,0,-37.4481 0/0:10:10,0:10:336:0:0:0,-3.0103,-30.5655 0/0:3:3,0:3:104:0:0:0,-0.90309,-9.70309 dDocent_Contig_13885 7 . C T 232.322 . AB=0.254902;ABP=29.6215;AC=3;AF=0.375;AN=8;AO=13;CIGAR=1X;DP=58;DPB=58;DPRA=2.42857;EPP=31.2394;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.977778;PAO=0;PQA=0;PQR=0;PRO=0;QA=477;QR=1719;RO=45;RPL=0;RPP=31.2394;RPPR=100.727;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:13,4:13:499:4:155:-9.20793,0,-40.1397 0/1:13:10,3:10:386:3:97:-5.1335,0,-31.1832 0/1:21:15,6:15:585:6:225:-14.2886,0,-46.6716 0/0:7:7,0:7:249:0:0:0,-2.10721,-22.7506 dDocent_Contig_13886 7 . C T 380.211 . AB=0.380952;ABP=8.18047;AC=3;AF=0.5;AN=6;AO=16;CIGAR=1X2M1X;DP=42;DPB=42;DPRA=0;EPP=37.7539;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.3125;PAIREDR=0.615385;PAO=0;PQA=0;PQR=0;PRO=0;QA=612;QR=1000;RO=26;RPL=0;RPP=37.7539;RPPR=59.4686;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:12:8,4:8:311:4:156:-10.8049,0,-24.742 0|1:14:10,4:10:384:4:154:-10.0192,0,-30.7011 0|1:16:8,8:8:305:8:302:-22.7199,0,-22.9935 .:.:.:.:.:.:.:. dDocent_Contig_13887 9 . C T 186.932 . AB=0.173913;ABP=66.7383;AC=2;AF=0.25;AN=8;AO=12;CIGAR=1X;DP=84;DPB=84;DPRA=4.6;EPP=29.068;EPPR=159.356;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=468;QR=2728;RO=72;RPL=0;RPP=29.068;RPPR=159.356;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=72;SRP=159.356;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:40:34,6:34:1281:6:234:-9.3899,0,-103.531 0/1:29:23,6:23:869:6:234:-12.7012,0,-69.794 0/0:9:9,0:9:350:0:0:0,-2.70927,-31.8614 0/0:6:6,0:6:228:0:0:0,-1.80618,-20.8843 dDocent_Contig_13888 50 . T C 70.6455 . AB=0.125;ABP=22.5536;AC=3;AF=0.375;AN=8;AO=2;CIGAR=1X7M;DP=36;DPB=37;DPRA=3.2;EPP=7.35324;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.827586;PAO=0;PQA=0;PQR=0;PRO=0;QA=79;QR=1120;RO=29;RPL=2;RPP=7.35324;RPPR=65.983;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:9:7,2,0:7:267:2,0:79,0:-4.78836,0,-21.6788,-6.89557,-22.2809,-28.7848 0|1:16:14,0,2:14:536:0,2:0,79:-2.68076,-6.89518,-50.8682,0,-44.3661,-43.7641 0|1:6:3,2,0:3:120:2,0:72,0:-4.97095,0,-9.31299,-5.87404,-9.91505,-15.7792 0|0:5:5,0,0:5:197:0,0:0,0:0,-1.50515,-18.1061,-1.50515,-18.1061,-18.1061 dDocent_Contig_13889 10 . C A 118.881 . AB=0.8;ABP=6.91895;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=48;DPB=48;DPRA=1.18182;EPP=13.8677;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.837209;PAO=0;PQA=0;PQR=0;PRO=0;QA=204;QR=1734;RO=43;RPL=0;RPP=13.8677;RPPR=96.3836;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:11,0:11:446:0:0:0,-3.31133,-40.496 0/0:11:11,0:11:436:0:0:0,-3.31133,-39.5918 0/0:21:20,1:20:812:1:41:0,-2.22706,-69.3005 0/1:5:1,4:1:40:4:163:-13.5533,0,-2.49053 dDocent_Contig_13890 53 . G A 130.872 . AB=0.214286;ABP=32.7905;AC=3;AF=0.375;AN=8;AO=9;CIGAR=1X;DP=63;DPB=63;DPRA=0.666667;EPP=22.5536;EPPR=120.27;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=334;QR=2089;RO=54;RPL=9;RPP=22.5536;RPPR=120.27;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:21:21,0:21:826:0:0:0,-6.32163,-74.6566 0/1:31:26,5:26:1020:5:193:-8.4094,0,-82.7649 0/1:4:2,2:2:79:2:67:-5.15736,0,-6.29312 0/1:7:5,2:5:164:2:74:-4.91822,0,-12.9678 dDocent_Contig_13891 23 . G A 242.635 . AB=0.272727;ABP=27.6861;AC=4;AF=0.5;AN=8;AO=15;CIGAR=1X2M11I1X;DP=55;DPB=96.25;DPRA=0;EPP=35.5824;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=37.0667;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.0666667;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=575;QR=1548;RO=40;RPL=0;RPP=35.5824;RPPR=89.8692;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:13:7,6:7:272:6:232:-15.2893,0,-20.9321 0|1:32:26,6:26:1004:6:233:-9.51079,0,-81.0275 0|1:5:4,1:4:152:1:38:-1.94099,0,-12.5439 0|1:5:3,2:3:120:2:72:-4.77552,0,-9.68275 dDocent_Contig_13893 107 . N A 47.5054 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=50;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:50:-4.74945,-0.60206,0 dDocent_Contig_13894 13 . G C 138.236 . AB=0.186047;ABP=39.8243;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=89;DPB=89;DPRA=2.80435;EPP=20.3821;EPPR=178.9;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.987654;PAO=0;PQA=0;PQR=0;PRO=0;QA=309;QR=3201;RO=81;RPL=0;RPP=20.3821;RPPR=178.9;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=81;SRP=178.9;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:43:35,8:35:1398:8:309:-15.2216,0,-113.131 0/0:18:18,0:18:695:0:0:0,-5.41854,-62.8693 0/0:14:14,0:14:541:0:0:0,-4.21442,-49.0212 0/0:14:14,0:14:567:0:0:0,-4.21442,-51.3727 dDocent_Contig_13896 81 . T C 142.402 . AB=0.25;ABP=20.3821;AC=2;AF=0.25;AN=8;AO=8;CIGAR=1X;DP=70;DPB=70;DPRA=0.842105;EPP=20.3821;EPPR=137.642;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.935484;PAO=0;PQA=0;PQR=0;PRO=0;QA=295;QR=2352;RO=62;RPL=4;RPP=3.0103;RPPR=3.15039;RPR=4;RUN=1;SAF=4;SAP=3.0103;SAR=4;SRF=32;SRP=3.15039;SRR=30;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:20,4:20:768:4:149:-6.54899,0,-62.219 0/0:12:12,0:12:468:0:0:0,-3.61236,-42.469 0/0:26:26,0:26:962:0:0:0,-7.82678,-86.8755 0/1:8:4,4:4:154:4:146:-11.0892,0,-11.8248 dDocent_Contig_13899 16 . A T 129.032 . AB=0.233333;ABP=21.5402;AC=2;AF=0.25;AN=8;AO=7;CIGAR=1X;DP=40;DPB=40;DPRA=3;EPP=18.2106;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.484848;PAO=0;PQA=0;PQR=0;PRO=0;QA=273;QR=1325;RO=33;RPL=0;RPP=18.2106;RPPR=74.6689;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:3:3,0:3:122:0:0:0,-0.90309,-11.3725 0/1:19:14,5:14:566:5:191:-11.8322,0,-45.5636 0/0:7:7,0:7:277:0:0:0,-2.10721,-25.2972 0/1:11:9,2:9:360:2:82:-4.46835,0,-29.452 dDocent_Contig_13900 201 . G A 63.8313 . AB=0.230769;ABP=11.1951;AC=4;AF=0.5;AN=8;AO=4;CIGAR=1X;DP=23;DPB=23;DPRA=0.518519;EPP=11.6962;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=135;QR=699;RO=19;RPL=4;RPP=11.6962;RPPR=44.2683;RPR=0;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=44.2683;SRR=19;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:5:4,1:4:148:1:30:-1.49442,0,-12.1768 0/0:9:9,0:9:331:0:0:0,-2.70927,-30.1407 0/1:8:6,2:6:220:2:68:-4.04918,0,-17.7472 1/1:1:0,1:0:0:1:37:-3.69783,-0.30103,0 dDocent_Contig_13901 28 . A T 2549.19 . AB=0.705882;ABP=46.8229;AC=4;AF=0.5;AN=8;AO=84;CIGAR=1X;DP=119;DPB=119;DPRA=0;EPP=185.414;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.892857;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3293;QR=1390;RO=35;RPL=0;RPP=185.414;RPPR=79.0118;RPR=84;RUN=1;SAF=84;SAP=185.414;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:9,21:9:359:21:823:-65.3581,0,-23.6428 0/1:29:3,26:3:110:26:1022:-83.5464,0,-1.53014 0/1:42:19,23:19:759:23:912:-69.7475,0,-55.9905 0/1:18:4,14:4:162:14:536:-43.1593,0,-9.54842 dDocent_Contig_13902 24 . C A 422.21 . AB=0.271429;ABP=34.7758;AC=4;AF=0.5;AN=8;AO=19;CIGAR=1X;DP=70;DPB=70;DPRA=0;EPP=44.2683;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.263158;PAIREDR=0.980392;PAO=0;PQA=0;PQR=0;PRO=0;QA=768;QR=2061;RO=51;RPL=0;RPP=44.2683;RPPR=113.755;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:21,3:21:851:3:123:-4.24007,0,-69.6771 0/1:16:6,10:6:242:10:399:-31.4525,0,-17.341 0/1:25:20,5:20:808:5:205:-11.3093,0,-65.5106 0/1:5:4,1:4:160:1:41:-2.58942,0,-13.2783 dDocent_Contig_13903 34 . C T 1417.73 . AB=0.444444;ABP=6.14687;AC=4;AF=0.5;AN=8;AO=52;CIGAR=1X3M1X1M1X3M;DP=117;DPB=117.5;DPRA=0;EPP=115.927;EPPR=133.299;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.826923;PAIREDR=0.65;PAO=0;PQA=0;PQR=0;PRO=0;QA=2021;QR=2329;RO=60;RPL=0;RPP=115.927;RPPR=133.299;RPR=52;RUN=1;SAF=52;SAP=115.927;SAR=0;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:33:21,5,7:21:821:5,7:198,274:-16.2057,-6.22849,-72.2226,0,-51.1976,-65.3883 0|1:31:17,0,14:17:652:0,14:0,540:-39.6112,-44.7287,-98.2364,0,-53.8921,-49.6777 0|1:28:10,0,18:10:386:0,18:0,701:-54.9928,-58.0031,-89.6997,0,-32.0835,-26.665 0|1:25:12,0,13:12:470:0,13:0,506:-38.3613,-41.9737,-80.6228,0,-39.0393,-35.1259 dDocent_Contig_13904 9 . C T 7616.92 . AB=0.0365854;ABP=155.967;AC=0;AF=0;AN=8;AO=8;CIGAR=1X2M1X;DP=295;DPB=295;DPRA=0;EPP=20.3821;EPPR=100.727;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=0.375;PAIREDR=0.0888889;PAO=0;PQA=0;PQR=0;PRO=0;QA=318;QR=1783;RO=45;RPL=0;RPP=20.3821;RPPR=100.727;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:99:4,0,5,90:4:158:0,5,90:0,199,3584:-307.983,-309.187,-322.189,-292.801,-305.803,-304.298,-14.0923,-27.0927,-10.7048,0 0|0:89:19,6,0,64:19:753:6,0,64:242,0,2583:-207.204,-192.976,-253.15,-212.923,-254.956,-274.904,0,-42.0274,-61.9765,-42.7106 0|0:82:17,0,3,60:17:672:0,3,60:0,119,2410:-193.48,-198.598,-253.899,-188.802,-244.103,-243.2,0,-55.3096,-45.513,-37.2478 0|0:25:5,2,0,18:5:200:2,0,18:82,0,727:-58.4221,-53.1585,-69.031,-59.9273,-69.6331,-76.4018,0,-9.69736,-16.4683,-11.0498 dDocent_Contig_13905 7 . C T 54.936 . AB=0.166667;ABP=26.1727;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=180;DPB=180;DPRA=0.461538;EPP=11.6962;EPPR=385.189;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.943182;PAO=0;PQA=0;PQR=0;PRO=0;QA=156;QR=6781;RO=176;RPL=0;RPP=11.6962;RPPR=385.189;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=176;SRP=385.189;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:84:84,0:84:3232:0:0:0,-25.2865,-291.025 0/0:51:51,0:51:1965:0:0:0,-15.3525,-177.087 0/0:21:21,0:21:810:0:0:0,-6.32163,-73.2242 0/1:24:20,4:20:774:4:156:-7.19257,0,-62.7635 dDocent_Contig_13907 27 . T A 2447 . AB=0.0555556;ABP=95.6598;AC=0;AF=0;AN=8;AO=3;CIGAR=5M1X1M2I5M;DP=114;DPB=106.917;DPRA=0;EPP=9.52472;EPPR=46.4397;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=790;RO=20;RPL=0;RPP=9.52472;RPPR=46.4397;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:37:11,25,0,0:11:434:25,0,0:979,0,0:-77.1665,0,-28.1796,-80.4778,-35.7054,-116.189,-80.4778,-35.7054,-116.189,-116.189 0|0:54:8,24,3,19:8:318:24,3,19:935,122,748:-109.78,-35.3475,-54.3056,-102.124,-51.4659,-127.404,-50.6533,0,-66.7724,-71.1174 0|0:13:0,7,0,6:0:0:7,0,6:252,0,229:-39.7071,-19.1657,-17.0585,-39.7071,-19.1657,-39.7071,-20.9127,0,-20.9127,-19.1065 0|0:10:1,7,0,2:1:38:7,0,2:277,0,74:-25.4426,-2.92747,-3.94009,-25.7436,-6.0473,-28.8592,-19.6954,0,-22.81,-22.2079 dDocent_Contig_13908 145 . A C 175.288 . AB=0.153846;ABP=16.5402;AC=3;AF=0.375;AN=8;AO=8;CIGAR=1X;DP=49;DPB=49;DPRA=2.38889;EPP=20.3821;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=324;QR=1584;RO=41;RPL=0;RPP=20.3821;RPPR=92.0407;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=92.0407;SRR=41;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:4:0,4:0:0:4:163:-15.0584,-1.20412,0 0/0:26:24,2:24:924:2:79:0,-0.329148,-75.957 0/1:13:11,2:11:429:2:82:-3.86629,0,-35.0469 0/0:6:6,0:6:231:0:0:0,-1.80618,-21.1564 dDocent_Contig_13909 141 . T C 185.419 . AB=0.466667;ABP=3.15506;AC=1;AF=0.25;AN=4;AO=7;CIGAR=1X;DP=24;DPB=24;DPRA=1.66667;EPP=18.2106;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=271;QR=646;RO=17;RPL=0;RPP=18.2106;RPPR=39.9253;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=39.9253;SRR=17;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 0/1:15:8,7:8:310:7:271:-20.2409,0,-23.7481 0/0:9:9,0:9:336:0:0:0,-2.70927,-30.593 ./.:.:.:.:.:.:.:. dDocent_Contig_13910 39 . T C 428.479 . AB=0.34;ABP=14.1282;AC=3;AF=0.5;AN=6;AO=17;CIGAR=1X;DP=50;DPB=50;DPRA=0;EPP=39.9253;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=692;QR=1324;RO=33;RPL=0;RPP=39.9253;RPPR=74.6689;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 0/1:28:24,4:24:963:4:163:-6.62959,0,-78.5404 0/1:16:7,9:7:280:9:365:-28.3975,0,-20.7553 0/1:6:2,4:2:81:4:164:-13.3437,0,-5.87955 dDocent_Contig_13911 87 . T A 591.668 . AB=0.529412;ABP=3.26577;AC=4;AF=0.666667;AN=6;AO=23;CIGAR=1X;DP=39;DPB=39;DPRA=0;EPP=52.9542;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=799;QR=536;RO=16;RPL=23;RPP=52.9542;RPPR=37.7539;RPR=0;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:10,11:10:341:11:383:-28.4834,0,-24.6988 0/1:13:6,7:6:195:7:242:-18.2043,0,-13.9562 ./.:.:.:.:.:.:.:. 1/1:5:0,5:0:0:5:174:-16.002,-1.50515,0 dDocent_Contig_13913 209 . N G 75.9266 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=80;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:80:-7.59157,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_13914 98 . N T 548.725 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=17;CIGAR=1X;DP=17;DPB=17;DPRA=0;EPP=39.9253;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=593;QR=0;RO=0;RPL=17;RPP=39.9253;RPPR=0;RPR=0;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:6:0,6:0:0:6:213:-19.5164,-1.80618,0 ./.:.:.:.:.:.:.:. 1/1:5:0,5:0:0:5:177:-16.277,-1.50515,0 1/1:6:0,6:0:0:6:203:-18.6019,-1.80618,0 dDocent_Contig_13915 9 . C G 227.792 . AB=0;ABP=0;AC=2;AF=0.25;AN=8;AO=8;CIGAR=1X;DP=32;DPB=32;DPRA=2.55556;EPP=20.3821;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.25;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=285;QR=927;RO=24;RPL=0;RPP=20.3821;RPPR=55.1256;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:8:8,0:8:309:0:0:0,-2.40824,-28.173 0/0:16:15,1:15:579:1:39:0,-0.919915,-48.5559 0/0:1:1,0:1:39:0:0:0,-0.30103,-3.89656 1/1:7:0,7:0:0:7:246:-22.4775,-2.10721,0 dDocent_Contig_13916 10 . A C 43.2171 . AB=0.2;ABP=14.7363;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=64;DPB=64;DPRA=2.71429;EPP=13.8677;EPPR=131.127;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.5932;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=0.8;PAIREDR=0.983051;PAO=0;PQA=0;PQR=0;PRO=0;QA=190;QR=2358;RO=59;RPL=0;RPP=13.8677;RPPR=131.127;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=59;SRP=131.127;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:17:16,1:16:643:1:40:0,-1.12183,-54.2074 0/0:25:24,1:24:966:1:37:0,-3.82792,-82.9859 0/1:15:12,3:12:471:3:113:-6.02057,0,-38.2226 0/0:7:7,0:7:278:0:0:0,-2.10721,-25.3902 dDocent_Contig_13919 125 . G A 449.34 . AB=0.5;ABP=3.0103;AC=3;AF=0.375;AN=8;AO=21;CIGAR=1X;DP=48;DPB=48;DPRA=2.33333;EPP=48.6112;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=689;QR=903;RO=27;RPL=0;RPP=48.6112;RPPR=61.6401;RPR=21;RUN=1;SAF=0;SAP=48.6112;SAR=21;SRF=0;SRP=61.6401;SRR=27;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:9,4:9:315:4:130:-8.10768,0,-24.7754 0/1:19:6,13:6:180:13:426:-32.9359,0,-10.7746 0/1:10:6,4:6:198:4:133:-9.28834,0,-15.1333 0/0:6:6,0:6:210:0:0:0,-1.80618,-19.2425 dDocent_Contig_13920 57 . G T 235.182 . AB=0.296296;ABP=12.7417;AC=4;AF=0.666667;AN=6;AO=10;CIGAR=2X;DP=29;DPB=29;DPRA=0;EPP=24.725;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=0.7;PAIREDR=0.684211;PAO=0;PQA=0;PQR=0;PRO=0;QA=379;QR=760;RO=19;RPL=10;RPP=24.725;RPPR=44.2683;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:11:9,2:9:359:2:81:-4.3744,0,-29.3624 0|1:16:10,6:10:401:6:240:-17.159,0,-31.634 1|1:2:0,2:0:0:2:58:-5.5067,-0.60206,0 .:.:.:.:.:.:.:. dDocent_Contig_13921 45 . A T 78.1421 . AB=0.115385;ABP=36.4176;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1M1X10M;DP=68;DPB=68.4167;DPRA=0.764706;EPP=9.52472;EPPR=128.956;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=59.1552;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.982759;PAO=0;PQA=0;PQR=0;PRO=0;QA=123;QR=2260;RO=58;RPL=3;RPP=9.52472;RPPR=128.956;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:34:32,0,0:32:1242:0,0:0,0:0,-9.63296,-111.676,-9.63296,-111.676,-111.676 0|1:26:21,2,3:21:820:2,3:82,123:-3.83061,-3.38408,-70.1724,0,-60.6198,-66.4866 0|0:6:4,2,0:4:158:2,0:81,0:-5.87955,0,-10.1153,-7.08367,-10.7174,-17.424 0|0:2:1,1,0:1:40:1,0:41,0:-3.49251,0,-3.39362,-3.79354,-3.69465,-7.08367 dDocent_Contig_13923 127 . C T 225.1 . AB=0.416667;ABP=3.73412;AC=1;AF=0.125;AN=8;AO=5;CIGAR=5M2X;DP=43;DPB=43;DPRA=1;EPP=13.8677;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=45;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=174;QR=934;RO=31;RPL=0;RPP=13.8677;RPPR=70.3259;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=70.3259;SRR=31;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:4:4,0,0:4:131:0,0:0,0:0,-1.20412,-12.1144,-1.20412,-12.1144,-12.1144 0|0:20:18,0,0:18:541:0,0:0,0:0,-5.41854,-48.8691,-5.41854,-48.8691,-48.8691 0|1:12:7,5,0:7:223:5,0:174,0:-12.2128,0,-16.7718,-14.32,-18.277,-32.2636 0|0:7:2,0,5:2:39:0,5:0,167:-13.2515,-13.8536,-16.7217,0,-3.10277,-1.59762 dDocent_Contig_13924 9 . C G 44.7825 . AB=0.1875;ABP=16.582;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X2M1X;DP=28;DPB=28;DPRA=2.66667;EPP=9.52472;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=116;QR=985;RO=25;RPL=0;RPP=9.52472;RPPR=57.2971;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:16:13,3:13:512:3:116:-6.00106,0,-41.6122 0|0:7:7,0:7:280:0:0:0,-2.10721,-25.5723 0|0:5:5,0:5:193:0:0:0,-1.50515,-17.7408 .:.:.:.:.:.:.:. dDocent_Contig_13925 17 . C G 418.036 . AB=0.333333;ABP=15.3153;AC=3;AF=0.375;AN=8;AO=17;CIGAR=1X;DP=83;DPB=83;DPRA=0.53125;EPP=39.9253;EPPR=146.327;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.5909;NS=4;NUMALT=1;ODDS=0;PAIRED=0.882353;PAIREDR=0.30303;PAO=0;PQA=0;PQR=0;PRO=0;QA=682;QR=2629;RO=66;RPL=0;RPP=39.9253;RPPR=146.327;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=66;SRP=146.327;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:32:32,0:32:1270:0:0:0,-9.63296,-114.565 0/1:22:13,9:13:533:9:367:-26.7726,0,-41.4677 0/1:24:17,7:17:669:7:279:-18.2561,0,-53.2879 0/1:5:4,1:4:157:1:36:-2.09312,0,-13.002 dDocent_Contig_13926 118 . T C 380.678 . AB=0.466667;ABP=3.29983;AC=5;AF=0.625;AN=8;AO=17;CIGAR=1X;DP=33;DPB=33;DPRA=0;EPP=39.9253;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.9375;PAO=0;PQA=0;PQR=0;PRO=0;QA=568;QR=558;RO=16;RPL=0;RPP=39.9253;RPPR=37.7539;RPR=17;RUN=1;SAF=0;SAP=39.9253;SAR=17;SRF=0;SRP=37.7539;SRR=16;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:9,3:9:315:3:104:-6.09073,0,-25.0764 0/1:15:6,9:6:208:9:289:-21.8077,0,-14.5442 0/1:3:1,2:1:35:2:70:-5.74431,0,-2.59554 1/1:3:0,3:0:0:3:105:-9.79616,-0.90309,0 dDocent_Contig_13927 119 . A T 52.0219 . AB=0.3;ABP=6.48466;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=25;DPB=25;DPRA=2;EPP=9.52472;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=103;QR=766;RO=22;RPL=0;RPP=9.52472;RPPR=50.7827;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=50.7827;SRR=22;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:7,3:7:235:3:103:-6.59972,0,-18.4662 0/0:10:10,0:10:354:0:0:0,-3.0103,-32.1997 0/0:3:3,0:3:106:0:0:0,-0.90309,-9.88916 0/0:2:2,0:2:71:0:0:0,-0.60206,-6.74206 dDocent_Contig_13928 29 . A G 81.5299 . AB=0.266667;ABP=10.1038;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1X;DP=25;DPB=25;DPRA=0.75;EPP=11.6962;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.952381;PAO=0;PQA=0;PQR=0;PRO=0;QA=164;QR=823;RO=21;RPL=0;RPP=11.6962;RPPR=48.6112;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:10:10,0:10:387:0:0:0,-3.0103,-35.1779 0/1:10:9,1:9:361:1:41:-1.08427,0,-29.8427 0/1:5:2,3:2:75:3:123:-9.95964,0,-5.61365 ./.:.:.:.:.:.:.:. dDocent_Contig_13929 159 . G A 465.126 . AB=0.5;ABP=3.0103;AC=3;AF=0.375;AN=8;AO=17;CIGAR=1X;DP=41;DPB=41;DPRA=1.61905;EPP=24.5973;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=678;QR=930;RO=24;RPL=15;RPP=24.5973;RPPR=55.1256;RPR=2;RUN=1;SAF=0;SAP=39.9253;SAR=17;SRF=0;SRP=55.1256;SRR=24;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:4,5:4:154:5:199:-15.5782,0,-11.5217 0/0:7:7,0:7:286:0:0:0,-2.10721,-26.1148 0/1:13:8,5:8:287:5:197:-14.1921,0,-22.2474 0/1:12:5,7:5:203:7:282:-22.1402,0,-15.0407 dDocent_Contig_13930 149 . C T 830.452 . AB=0.171717;ABP=95.6817;AC=5;AF=0.625;AN=8;AO=17;CIGAR=2X2M1X;DP=99;DPB=99;DPRA=0;EPP=39.9253;EPPR=74.6689;GTI=0;LEN=1;MEANALT=3.5;MQM=31.7059;MQMR=60;NS=4;NUMALT=4;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=659;QR=1308;RO=33;RPL=0;RPP=39.9253;RPPR=74.6689;RPR=17;RUN=1;SAF=0;SAP=39.9253;SAR=17;SRF=0;SRP=74.6689;SRR=33;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:18:0,4,0,3,11:0:0:4,0,3,11:160,0,119,447:-42.4589,-38.6777,-37.4736,-42.4589,-38.6777,-42.4589,-37.0637,-33.3026,-37.0637,-36.1606,-5.45225,-1.6739,-5.45225,0,-2.14092 1|1:19:0,12,1,5,0:0:0:12,1,5,0:479,16,198,0:-21.6898,-12.3587,-8.74633,-20.8194,-11.5092,-20.5184,-9.37152,0,-8.49849,-7.86637,-21.6898,-12.3587,-20.8194,-9.37152,-21.6898 0|1:30:12,8,3,7,0:12:474:8,3,7,0:324,24,264,0:-14.2642,-13.7825,-50.4642,-17.3135,-52.3282,-55.5029,0,-35.0905,-38.6096,-37.0605,-17.8765,-52.8724,-56.406,-39.1677,-56.9696 0|1:32:21,7,1,2,1:21:834:7,1,2,1:266,5,78,39:-11.9562,0,-66.6571,-18.3602,-68.8336,-86.7624,-12.8392,-63.3361,-81.6344,-80.9659,-15.0634,-65.5579,-83.8571,-78.3613,-83.4901 dDocent_Contig_13931 34 . G C 4474.77 . AB=0.0760456;ABP=413.6;AC=1;AF=0.125;AN=8;AO=20;CIGAR=1M2X7M;DP=263;DPB=262.9;DPRA=0;EPP=46.4397;EPPR=87.6977;GTI=0;LEN=1;MEANALT=5.5;MQM=60;MQMR=60;NS=4;NUMALT=6;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=796;QR=1541;RO=39;RPL=0;RPP=46.4397;RPPR=87.6977;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:110:19,0,33,0,9,8,37:19:757:0,33,0,9,8,37:0,1290,0,358,318,1460:-158.125,-163.844,-226.183,-57.7884,-120.128,-110.194,-163.844,-226.183,-120.128,-226.183,-134.366,-196.706,-90.6506,-196.706,-193.997,-137.663,-200.002,-93.9466,-200.002,-170.525,-197.594,-43.715,-106.056,0,-106.056,-76.5777,-79.8738,-94.9174 0|0:51:4,0,14,0,3,2,26:4:159:0,14,0,3,2,26:0,523,0,115,80,1040:-114.21,-115.414,-128.506,-72.6013,-85.6934,-81.4789,-115.414,-128.506,-85.6934,-128.506,-105.975,-119.068,-76.2553,-119.068,-118.164,-108.823,-121.915,-79.1026,-121.915,-112.477,-121.313,-29.7249,-42.8212,0,-42.8212,-33.3808,-36.2285,-34.9944 0|0:73:12,7,4,0,0,2,45:12:471:7,4,0,0,2,45:274,153,0,0,82,1764:-141.437,-122.522,-159.151,-132.497,-148.705,-170.029,-145.05,-161.258,-171.233,-183.786,-145.05,-161.258,-171.233,-183.786,-183.786,-138.281,-154.489,-164.464,-177.017,-177.017,-176.415,0,-16.2081,-26.1837,-38.7353,-38.7353,-31.9659,-25.189 1|0:29:4,0,4,4,0,8,9:4:154:0,4,4,0,8,9:0,150,148,0,316,352:-41.1035,-42.3076,-54.9507,-30.0234,-42.6661,-41.462,-30.206,-42.8485,-30.5648,-41.6444,-42.3076,-54.9507,-42.6661,-42.8485,-54.9507,-16.3004,-28.9442,-16.6597,-16.8424,-28.9442,-26.5359,-13.367,-26.0105,-13.7264,-13.9092,-26.0105,0,-23.3012 dDocent_Contig_13933 85 . T C 535.144 . AB=0.387097;ABP=6.44263;AC=5;AF=0.625;AN=8;AO=21;CIGAR=1X;DP=40;DPB=40;DPRA=0;EPP=48.6112;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=743;QR=679;RO=19;RPL=21;RPP=48.6112;RPPR=44.2683;RPR=0;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:8:6,2:6:213:2:68:-4.04969,0,-17.1082 0/1:18:11,7:11:394:7:250:-17.4281,0,-30.383 0/1:5:2,3:2:72:3:105:-8.29094,0,-5.33157 1/1:9:0,9:0:0:9:320:-29.1426,-2.70927,0 dDocent_Contig_13935 75 . T C 114.618 . AB=0.666667;ABP=4.45795;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=56;DPB=56;DPRA=0.36;EPP=11.6962;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=0.846154;PAO=0;PQA=0;PQR=0;PRO=0;QA=162;QR=2073;RO=52;RPL=2;RPP=3.0103;RPPR=5.68288;RPR=2;RUN=1;SAF=2;SAP=3.0103;SAR=2;SRF=30;SRP=5.68288;SRR=22;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:14:14,0:14:553:0:0:0,-4.21442,-50.1102 0/1:6:2,4:2:80:4:162:-13.1608,0,-5.78561 0/0:28:28,0:28:1118:0:0:0,-8.42884,-100.906 0/0:8:8,0:8:322:0:0:0,-2.40824,-29.3481 dDocent_Contig_13936 38 . G A 1374.23 . AB=0.386364;ABP=17.8158;AC=4;AF=0.5;AN=8;AO=51;CIGAR=1X;DP=132;DPB=132;DPRA=0;EPP=113.755;EPPR=178.9;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.764706;PAIREDR=0.91358;PAO=0;PQA=0;PQR=0;PRO=0;QA=2035;QR=3217;RO=81;RPL=0;RPP=113.755;RPPR=178.9;RPR=51;RUN=1;SAF=51;SAP=113.755;SAR=0;SRF=81;SRP=178.9;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:13,16:13:517:16:636:-48.8413,0,-38.1465 0/1:36:23,13:23:912:13:519:-36.2208,0,-71.5464 0/1:51:31,20:31:1226:20:799:-56.8755,0,-95.2642 0/1:16:14,2:14:562:2:81:-2.86925,0,-46.1073 dDocent_Contig_13937 25 . G A 253.324 . AB=0.232026;ABP=193.873;AC=1;AF=0.125;AN=8;AO=344;CIGAR=1X2M1X;DP=2286;DPB=2286;DPRA=0;EPP=724.166;EPPR=3873.77;GTI=0;LEN=1;MEANALT=4;MQM=18.6134;MQMR=30.2469;NS=4;NUMALT=1;ODDS=0;PAIRED=0.889535;PAIREDR=0.494271;PAO=0;PQA=0;PQR=0;PRO=0;QA=13538;QR=73759;RO=1920;RPL=0;RPP=749.997;RPPR=4154.88;RPR=344;RUN=1;SAF=341;SAP=724.166;SAR=3;SRF=1887;SRP=3890.53;SRR=33;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:617:543,70:543:20924:70:2739:0,-70.0264,-1100.28 0|0:773:637,126:637:24532:126:4939:0,-36.1808,-1265.91 0|0:590:505,77:505:19325:77:3042:0,-62.0982,-1011.62 0|1:306:235,71:235:8978:71:2818:-27.0313,0,-506.659 dDocent_Contig_13938 19 . C A 336.457 . AB=0.333333;ABP=12.42;AC=1;AF=0.125;AN=8;AO=13;CIGAR=1X;DP=67;DPB=67;DPRA=4.17857;EPP=31.2394;EPPR=120.27;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=516;QR=2141;RO=54;RPL=0;RPP=31.2394;RPPR=120.27;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:39:26,13:26:1034:13:516:-35.0434,0,-81.6094 0/0:2:2,0:2:81:0:0:0,-0.60206,-7.68573 0/0:7:7,0:7:274:0:0:0,-2.10721,-25.0231 0/0:19:19,0:19:752:0:0:0,-5.71957,-67.9978 dDocent_Contig_13939 107 . N A 405.242 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=12;CIGAR=1X;DP=12;DPB=12;DPRA=0;EPP=29.068;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=427;QR=0;RO=0;RPL=0;RPP=29.068;RPPR=0;RPR=12;RUN=1;SAF=0;SAP=29.068;SAR=12;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1:0,1:0:0:1:35:-3.49863,-0.30103,0 1/1:7:0,7:0:0:7:251:-22.9379,-2.10721,0 1/1:3:0,3:0:0:3:106:-9.8891,-0.90309,0 1/1:1:0,1:0:0:1:35:-3.49863,-0.30103,0 dDocent_Contig_13940 19 . G C 55.5871 . AB=0.16;ABP=28.1125;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=99;DPB=99;DPRA=1.01351;EPP=11.6962;EPPR=209.3;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.989474;PAO=0;PQA=0;PQR=0;PRO=0;QA=160;QR=3828;RO=95;RPL=0;RPP=11.6962;RPPR=209.3;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=95;SRP=209.3;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:33:33,0:33:1326:0:0:0,-9.93399,-119.603 0/1:25:21,4:21:845:4:160:-7.25768,0,-68.8322 0/0:33:33,0:33:1334:0:0:0,-9.93399,-120.318 0/0:8:8,0:8:323:0:0:0,-2.40824,-29.439 dDocent_Contig_13944 21 . C G 746.153 . AB=0.3625;ABP=16.1477;AC=4;AF=0.5;AN=8;AO=29;CIGAR=1X;DP=80;DPB=80;DPRA=0;EPP=65.983;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1162;QR=2033;RO=51;RPL=0;RPP=65.983;RPPR=113.755;RPR=29;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:24,6:24:955:6:241:-13.0349,0,-77.2155 0/1:24:19,5:19:759:5:203:-11.4283,0,-61.4055 0/1:21:4,17:4:157:17:680:-55.2058,0,-8.18555 0/1:5:4,1:4:162:1:38:-2.29212,0,-13.4616 dDocent_Contig_13945 9 . A T 81.3028 . AB=0.145833;ABP=55.3066;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1M1D2M1X3M2X;DP=72;DPB=71;DPRA=6;EPP=18.2106;EPPR=133.299;GTI=0;LEN=1;MEANALT=3;MQM=41.8571;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=267;QR=2328;RO=60;RPL=0;RPP=18.2106;RPPR=133.299;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:48:36,7,3:36:1396:7,3:267,119:-9.52683,0,-112.589,-10.5587,-104.9,-124.373 0|0:20:20,0,0:20:780:0,0:0,0:0,-6.0206,-70.527,-6.0206,-70.527,-70.527 0|0:3:3,0,0:3:115:0,0:0,0:0,-0.90309,-10.7249,-0.90309,-10.7249,-10.7249 0|0:1:1,0,0:1:37:0,0:0,0:0,-0.30103,-3.69783,-0.30103,-3.69783,-3.69783 dDocent_Contig_13947 209 . N G 71.2068 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=75;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:75:-7.11959,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_13948 7 . C T 3118.55 . AB=0.0408163;ABP=361.968;AC=4;AF=0.5;AN=8;AO=8;CIGAR=1X5M;DP=361;DPB=361;DPRA=0;EPP=20.3821;EPPR=391.704;GTI=0;LEN=1;MEANALT=7.5;MQM=52.875;MQMR=59.5196;NS=4;NUMALT=6;ODDS=0;PAIRED=1;PAIREDR=0.692737;PAO=0;PQA=0;PQR=0;PRO=0;QA=312;QR=6947;RO=179;RPL=0;RPP=20.3821;RPPR=391.704;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=179;SRP=391.704;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:108:64,33,7,1,0,2,0:64:2479:33,7,1,0,2,0:1264,266,37,0,78,0:-84.3875,0,-193.683,-81.9787,-181.943,-283.478,-100.896,-200.86,-282.828,-304.201,-103.653,-203.617,-285.586,-304.503,-307.26,-97.2412,-197.205,-279.174,-298.091,-300.848,-300.246,-103.653,-203.617,-285.586,-304.503,-307.26,-300.848,-307.26 0|1:129:56,49,2,13,3,1,3:56:2175:49,2,13,3,1,3:1861,71,499,117,39,121:-135.387,0,-163.962,-146.476,-172.943,-324.584,-111.621,-138.089,-284.562,-286.418,-143.192,-169.66,-316.133,-281.279,-320.999,-149.039,-175.506,-321.98,-287.126,-318.696,-327.448,-142.27,-168.738,-315.212,-280.357,-311.928,-317.775,-320.078 0|1:67:27,17,1,7,5,4,5:27:1053:17,1,7,5,4,5:660,39,269,195,156,202:-45.7265,0,-81.3807,-50.6917,-83.3356,-136.889,-32.0431,-64.6869,-115.379,-116.434,-37.8246,-70.4687,-121.161,-102.512,-122.818,-41.0305,-73.6746,-124.367,-105.718,-111.5,-126.325,-37.1986,-69.8432,-120.536,-101.887,-107.669,-110.875,-122.193 0|1:57:32,20,2,1,0,1,0:32:1240:20,2,1,0,1,0:772,75,39,0,39,0:-53.752,0,-95.8498,-57.5125,-95.9973,-158.773,-60.1855,-98.6711,-156.176,-161.749,-63.385,-101.87,-159.375,-162.05,-165.249,-60.1789,-98.6645,-156.169,-158.844,-162.043,-161.742,-63.385,-101.87,-159.375,-162.05,-165.249,-162.043,-165.249 dDocent_Contig_13949 24 . G A 132.169 . AB=0.194444;ABP=32.2045;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=142;DPB=142;DPRA=1.01887;EPP=18.2106;EPPR=215.734;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=56.2963;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.925926;PAO=0;PQA=0;PQR=0;PRO=0;QA=282;QR=5318;RO=135;RPL=0;RPP=18.2106;RPPR=296.159;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=125;SRP=215.734;SRR=10;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:59:59,0:59:2299:0:0:0,-17.7608,-199.959 0/1:36:29,7:29:1163:7:282:-14.9159,0,-87.9614 0/0:34:34,0:34:1355:0:0:0,-10.235,-114.632 0/0:13:13,0:13:501:0:0:0,-3.91339,-42.7138 dDocent_Contig_13950 5 . T A 1669.07 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=52;CIGAR=6I1X3M1X;DP=54;DPB=116.4;DPRA=0;EPP=115.927;EPPR=0;GTI=0;LEN=1;MEANALT=1.5;MQM=59.6154;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=0.0384615;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1836;QR=0;RO=0;RPL=0;RPP=115.927;RPPR=0;RPR=52;RUN=1;SAF=52;SAP=115.927;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:26:0,26:0:0:26:913:-82.4859,-7.82678,0 1|1:18:0,16:0:0:16:565:-50.9424,-4.81648,0 1|1:9:0,9:0:0:9:322:-29.2774,-2.70927,0 1|1:1:0,1:0:0:1:36:-3.59827,-0.30103,0 dDocent_Contig_13952 10 . T C 418.061 . AB=0.210526;ABP=72.1546;AC=2;AF=0.25;AN=8;AO=20;CIGAR=1X;DP=102;DPB=102;DPRA=13.5714;EPP=46.4397;EPPR=181.071;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=812;QR=3300;RO=82;RPL=0;RPP=46.4397;RPPR=181.071;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=82;SRP=181.071;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:51:43,8:43:1737:8:327:-14.4476,0,-141.19 0/1:44:32,12:32:1286:12:485:-30.7561,0,-102.759 0/0:5:5,0:5:195:0:0:0,-1.50515,-17.9235 0/0:2:2,0:2:82:0:0:0,-0.60206,-7.77968 dDocent_Contig_13953 23 . A G 39.4902 . AB=0.285714;ABP=8.59409;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X1M1X1M1X;DP=59;DPB=59;DPRA=2.47619;EPP=18.2106;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=26;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.846154;PAO=0;PQA=0;PQR=0;PRO=0;QA=251;QR=2053;RO=52;RPL=0;RPP=18.2106;RPPR=115.927;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:23:21,2:21:834:2:73:0,-1.89381,-70.3493 0|0:15:14,1:14:553:1:25:0,-2.63374,-48.2334 0|1:14:10,4:10:387:4:153:-5.64792,0,-30.9716 0|0:7:7,0:7:279:0:0:0,-2.10721,-25.4817 dDocent_Contig_13954 7 . C T 112.793 . AB=0.294118;ABP=9.26925;AC=2;AF=0.25;AN=8;AO=5;CIGAR=2X2M2X;DP=24;DPB=23.6667;DPRA=0;EPP=13.8677;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.4;PAIREDR=0.733333;PAO=0;PQA=0;PQR=0;PRO=0;QA=197;QR=582;RO=15;RPL=0;RPP=13.8677;RPPR=35.5824;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=15;SRP=35.5824;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:6:3,0,3:3:112:0,3:0,118:-9.19671,-10.0998,-19.26,0,-9.54321,-8.64012 0|1:6:5,0,1:5:196:0,1:0,40:-2.1895,-3.69465,-19.8066,0,-16.5102,-16.2092 0|0:5:2,1,1:2:78:1,1:40,39:-2.69633,0,-6.11073,-0.094159,-3.20588,-6.20241 0|0:7:5,2,0:5:196:2,0:69,0:-4.44411,0,-15.9082,-5.94926,-16.5102,-22.1013 dDocent_Contig_13955 73 . C A 247.921 . AB=0.317073;ABP=14.9269;AC=3;AF=0.375;AN=8;AO=13;CIGAR=1X;DP=65;DPB=65;DPRA=0.569444;EPP=31.2394;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=461;QR=1851;RO=52;RPL=13;RPP=31.2394;RPPR=115.927;RPR=0;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:24:24,0:24:844:0:0:0,-7.22472,-76.2762 0/1:14:10,4:10:356:4:140:-8.72996,0,-28.166 0/1:10:7,3:7:254:3:106:-6.87859,0,-20.2005 0/1:17:11,6:11:397:6:215:-14.5815,0,-30.9554 dDocent_Contig_13956 37 . T A 245.931 . AB=0.2;ABP=14.7363;AC=3;AF=0.375;AN=8;AO=5;CIGAR=1M1X1M;DP=38;DPB=36.3333;DPRA=0.772727;EPP=13.8677;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=202;QR=1094;RO=28;RPL=0;RPP=13.8677;RPPR=63.8115;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:11:11,0,0:11:439:0,0:0,0:0,-3.31133,-39.8657,-3.31133,-39.8657,-39.8657 0|1:15:12,0,3:12:460:0,3:0,120:-6.67186,-10.2842,-48.0169,0,-38.1289,-37.2258 1|1:2:0,0,2:0:0:0,2:0,82:-7.77968,-7.77968,-7.77968,-0.60206,-0.60206,0 0|0:10:5,5,0:5:195:5,0:180,0:-13.5389,0,-14.912,-15.0441,-16.4171,-31.0865 dDocent_Contig_13957 112 . T C 669.049 . AB=0.4;ABP=14.7363;AC=4;AF=0.5;AN=8;AO=54;CIGAR=2X;DP=135;DPB=135;DPRA=0;EPP=120.27;EPPR=131.127;GTI=0;LEN=1;MEANALT=2.5;MQM=26.4444;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.037037;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1791;QR=1950;RO=59;RPL=0;RPP=120.27;RPPR=131.127;RPR=54;RUN=1;SAF=0;SAP=120.27;SAR=54;SRF=0;SRP=131.127;SRR=59;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:48:19,18,11:19:642:18,11:594,362:-25.2511,0,-46.7489,-20.5616,-41.7989,-69.35 0|1:47:25,17,5:25:829:17,5:584,175:-28.5971,0,-62.0507,-28.6429,-59.6945,-94.2336 0|1:22:11,9,1:11:342:9,1:277,35:-8.31886,0,-24.8453,-11.3129,-27.2448,-38.5346 0|1:18:4,10,3:4:137:10,3:336,105:-12.1358,0,-8.19025,-10.7544,-8.68093,-21.0118 dDocent_Contig_13958 15 . C T 464.286 . AB=0.358974;ABP=9.74743;AC=5;AF=0.625;AN=8;AO=17;CIGAR=1X;DP=42;DPB=42;DPRA=0;EPP=39.9253;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=689;QR=993;RO=25;RPL=0;RPP=39.9253;RPPR=57.2971;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:14,8:14:544:8:321:-22.635,0,-42.6726 0/1:3:1,2:1:41:2:82:-6.87659,0,-3.19148 0/1:14:10,4:10:408:4:164:-10.9355,0,-32.8662 1/1:3:0,3:0:0:3:122:-11.3725,-0.90309,0 dDocent_Contig_13959 15 . G A 196.781 . AB=0.141026;ABP=90.3146;AC=2;AF=0.25;AN=8;AO=11;CIGAR=2X3M1X;DP=87;DPB=85.3333;DPRA=2.88889;EPP=26.8965;EPPR=144.156;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.984615;PAO=0;PQA=0;PQR=0;PRO=0;QA=435;QR=2569;RO=65;RPL=0;RPP=26.8965;RPPR=144.156;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=65;SRP=144.156;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:47:35,5,7:35:1378:5,7:194,272:-11.8149,-6.41291,-118.267,0,-97.4221,-111.253 0|0:21:15,4,2:15:598:4,2:159,82:-8.38791,0,-48.0319,-6.12945,-42.4665,-54.778 0|1:10:6,1,2:6:234:1,2:40,81:-4.87298,-3.38573,-22.308,0,-15.9272,-18.6211 0|0:9:9,0,0:9:359:0,0:0,0:0,-2.70927,-32.6739,-2.70927,-32.6739,-32.6739 dDocent_Contig_13961 19 . T C 96.4025 . AB=0.25;ABP=13.8677;AC=2;AF=0.25;AN=8;AO=5;CIGAR=1X;DP=32;DPB=32;DPRA=1.66667;EPP=13.8677;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=203;QR=1091;RO=27;RPL=0;RPP=13.8677;RPPR=61.6401;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:12,3:12:484:3:122:-6.85704,0,-39.3951 0/0:11:11,0:11:443:0:0:0,-3.31133,-40.2257 0/1:5:3,2:3:123:2:81:-6.18058,0,-9.95964 0/0:1:1,0:1:41:0:0:0,-0.30103,-4.09457 dDocent_Contig_13963 7 . C T 332.028 . AB=0.06;ABP=87.0897;AC=0;AF=0;AN=8;AO=3;CIGAR=2X5M;DP=100;DPB=100.571;DPRA=0;EPP=9.52472;EPPR=72.4974;GTI=0;LEN=1;MEANALT=5;MQM=18.6667;MQMR=60;NS=4;NUMALT=6;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=56;QR=1240;RO=32;RPL=0;RPP=9.52472;RPPR=72.4974;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:29:14,5,0,7,0,0,1:14:535:5,0,7,0,0,1:194,0,251,0,0,13:-15.1512,-17.797,-60.2396,-19.3656,-61.7448,-63.341,0,-42.486,-44.0664,-41.9592,-19.3656,-61.7448,-63.341,-44.0664,-63.341,-19.3656,-61.7448,-63.341,-44.0664,-63.341,-63.341,-18.7661,-61.1475,-62.7401,-43.4672,-62.7401,-62.7401,-62.4391 0|0:21:9,0,0,9,0,0,0:9:355:0,0,9,0,0,0:0,0,177,0,0,0:-8.74173,-11.451,-40.758,-11.451,-40.758,-40.758,0,-29.4025,-29.4025,-26.6933,-11.451,-40.758,-40.758,-29.4025,-40.758,-11.451,-40.758,-40.758,-29.4025,-40.758,-40.758,-11.451,-40.758,-40.758,-29.4025,-40.758,-40.758,-40.758 0|0:27:3,0,2,12,4,1,4:3:115:0,2,12,4,1,4:0,72,225,84,18,51:-13.1896,-14.0927,-23.5529,-8.74381,-18.2071,-17.6051,0,-9.47274,-4.1232,-5.86038,-8.81505,-18.2787,-12.9316,-4.21312,-17.0746,-13.0429,-22.5038,-17.1578,-8.42733,-17.2302,-22.2028,-11.7645,-21.2262,-15.8804,-7.17422,-15.9565,-20.1783,-20.0221 0|0:23:6,0,0,6,1,2,8:6:235:0,0,6,1,2,8:0,0,91,6,38,103:-3.48362,-5.2898,-24.6861,-5.2898,-24.6861,-24.6861,0,-19.4251,-19.4251,-17.6189,-5.27421,-24.6725,-24.6725,-19.4152,-24.3714,-3.00265,-22.4076,-22.4076,-17.1502,-22.3947,-21.8055,-0.526324,-19.956,-19.956,-14.7432,-19.9496,-17.6862,-17.5478 dDocent_Contig_13964 11 . C A 36.9861 . AB=0.128205;ABP=49.8362;AC=2;AF=0.25;AN=8;AO=6;CIGAR=1X;DP=84;DPB=84;DPRA=0.74359;EPP=16.0391;EPPR=163.811;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.6923;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.987179;PAO=0;PQA=0;PQR=0;PRO=0;QA=238;QR=3066;RO=78;RPL=0;RPP=16.0391;RPPR=172.385;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=77;SRP=163.811;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:19:18,1:18:708:1:41:0,-1.625,-59.9477 0/1:31:28,3:28:1074:3:115:-1.3928,0,-87.5047 0/0:26:26,0:26:1046:0:0:0,-7.82678,-94.4289 0/1:8:6,2:6:238:2:82:-5.37144,0,-19.385 dDocent_Contig_13965 9 . A G 102.232 . AB=0.272727;ABP=7.94546;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X2M1X;DP=26;DPB=26;DPRA=2.75;EPP=9.52472;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=52;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=109;QR=785;RO=20;RPL=0;RPP=9.52472;RPPR=46.4397;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:11:8,3,0:8:318:3,0:109,0:-6.82812,0,-25.6762,-9.23636,-26.5793,-35.444 0|0:8:7,0,1:7:271:0,1:0,36:-0.150467,-2.25768,-24.6328,0,-22.6473,-22.3463 0|0:4:4,0,0:4:156:0,0:0,0:0,-1.20412,-14.4164,-1.20412,-14.4164,-14.4164 0|0:3:1,0,2:1:40:0,2:0,81:-6.78264,-7.08367,-10.3771,0,-3.69465,-3.09259 dDocent_Contig_13966 10 . G A 138.918 . AB=0.3;ABP=9.95901;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=97;DPB=97;DPRA=0.779221;EPP=16.0391;EPPR=200.614;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=236;QR=3585;RO=91;RPL=0;RPP=16.0391;RPPR=200.614;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=91;SRP=200.614;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:33:33,0:33:1303:0:0:0,-9.93399,-117.541 0/0:30:30,0:30:1193:0:0:0,-9.0309,-107.65 0/0:14:14,0:14:529:0:0:0,-4.21442,-47.9433 0/1:20:14,6:14:560:6:236:-15.5908,0,-44.7215 dDocent_Contig_13967 58 . T G 85.3677 . AB=0.4;ABP=3.87889;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=51;DPB=51;DPRA=1.04;EPP=13.8677;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.6;PAIREDR=0.76087;PAO=0;PQA=0;PQR=0;PRO=0;QA=175;QR=1776;RO=46;RPL=0;RPP=13.8677;RPPR=9.80795;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=29;SRP=9.80795;SRR=17;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:6,4:6:237:4:140:-9.93463,0,-18.6918 0/0:5:5,0:5:194:0:0:0,-1.50515,-17.8308 0/0:20:20,0:20:761:0:0:0,-6.0206,-68.8119 0/0:16:15,1:15:584:1:35:0,-1.31785,-49.4017 dDocent_Contig_13968 64 . C A 260.142 . AB=0.47619;ABP=3.1137;AC=1;AF=0.125;AN=8;AO=10;CIGAR=1X;DP=69;DPB=69;DPRA=1.3125;EPP=24.725;EPPR=131.127;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.830508;PAO=0;PQA=0;PQR=0;PRO=0;QA=371;QR=2194;RO=59;RPL=5;RPP=3.0103;RPPR=9.23028;RPR=5;RUN=1;SAF=5;SAP=3.0103;SAR=5;SRF=36;SRP=9.23028;SRR=23;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:11,10:11:416:10:371:-27.4122,0,-31.4634 0/0:22:22,0:22:816:0:0:0,-6.62266,-73.7526 0/0:17:17,0:17:618:0:0:0,-5.11751,-55.9421 0/0:9:9,0:9:344:0:0:0,-2.70927,-31.3125 dDocent_Contig_13969 8 . T C 515.494 . AB=0.564103;ABP=4.40227;AC=3;AF=0.375;AN=8;AO=22;CIGAR=1X;DP=48;DPB=48;DPRA=1.44444;EPP=50.7827;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=48.4091;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=0.681818;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=857;QR=1012;RO=26;RPL=0;RPP=50.7827;RPPR=59.4686;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:6:1,5:1:39:5:195:-14.5493,0,-2.09038 0/1:21:9,12:9:349:12:467:-30.8705,0,-25.4493 0/1:12:7,5:7:273:5:195:-11.4472,0,-21.3257 0/0:9:9,0:9:351:0:0:0,-2.70927,-31.9518 dDocent_Contig_13970 95 . T A 310.49 . AB=0.521739;ABP=3.10471;AC=3;AF=0.375;AN=8;AO=12;CIGAR=5M1X1M1X;DP=28;DPB=31.375;DPRA=1.53333;EPP=29.068;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=0.666667;PAIREDR=1;PAO=4.5;PQA=154;PQR=154;PRO=4.5;QA=468;QR=591;RO=15;RPL=0;RPP=29.068;RPPR=35.5824;RPR=12;RUN=1;SAF=0;SAP=29.068;SAR=12;SRF=0;SRP=35.5824;SRR=15;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:12:7,5:7:280:5:199:-14.4359,0,-21.7021 0|0:5:5,0:5:199:0:0:0,-1.50515,-18.2889 0|1:5:2,3:2:79:3:116:-9.15116,0,-5.87213 0|1:6:1,4:1:33:4:153:-12.2933,0,-1.46407 dDocent_Contig_13971 23 . T C 556.779 . AB=0.477273;ABP=3.20771;AC=4;AF=0.5;AN=8;AO=21;CIGAR=1X;DP=44;DPB=44;DPRA=0;EPP=48.6112;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=819;QR=927;RO=23;RPL=0;RPP=48.6112;RPPR=52.9542;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:2,10:2:81:10:384:-31.2966,0,-4.07337 0/1:10:9,1:9:361:1:39:-0.886264,0,-29.8427 0/1:9:3,6:3:122:6:239:-19.1755,0,-8.66322 0/1:13:9,4:9:363:4:157:-10.5945,0,-29.1204 dDocent_Contig_13972 7 . C A 612.783 . AB=0.28866;ABP=40.6417;AC=4;AF=0.5;AN=8;AO=28;CIGAR=2X;DP=97;DPB=97;DPRA=0;EPP=63.8115;EPPR=152.842;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1071;QR=2645;RO=69;RPL=0;RPP=63.8115;RPPR=152.842;RPR=28;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=69;SRP=152.842;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:43:35,8:35:1353:8:307:-15.0475,0,-109.111 0|1:37:21,16:21:792:16:609:-44.0105,0,-60.4648 0|1:13:10,3:10:383:3:116:-6.90431,0,-30.9127 0|1:4:3,1:3:117:1:39:-2.69244,0,-9.70626 dDocent_Contig_13973 19 . C G 51.3748 . AB=0.285714;ABP=8.59409;AC=3;AF=0.375;AN=8;AO=4;CIGAR=1X;DP=29;DPB=29;DPRA=0.311111;EPP=11.6962;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=150;QR=1006;RO=25;RPL=0;RPP=11.6962;RPPR=57.2971;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:15:15,0:15:604:0:0:0,-4.51545,-54.6984 0/1:6:5,1:5:204:1:39:-2.09038,0,-16.9379 0/1:5:4,1:4:157:1:39:-2.39141,0,-13.0025 0/1:3:1,2:1:41:2:72:-5.93282,0,-3.19148 dDocent_Contig_13974 52 . T A 34.0873 . AB=0.285714;ABP=5.80219;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X;DP=46;DPB=46;DPRA=0.538462;EPP=7.35324;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=76;QR=1728;RO=44;RPL=2;RPP=7.35324;RPPR=98.5551;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:10:10,0:10:400:0:0:0,-3.0103,-36.3597 0/0:4:4,0:4:160:0:0:0,-1.20412,-14.7829 0/0:25:25,0:25:971:0:0:0,-7.52575,-87.6932 0/1:7:5,2:5:197:2:76:-5.10746,0,-15.999 dDocent_Contig_13975 12 . T C 1028.72 . AB=0.102041;ABP=137.819;AC=0;AF=0;AN=8;AO=13;CIGAR=1X3M1X2M1X;DP=110;DPB=110;DPRA=0;EPP=31.2394;EPPR=126.784;GTI=0;LEN=1;MEANALT=1.75;MQM=6;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=502;QR=2219;RO=57;RPL=0;RPP=31.2394;RPPR=126.784;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:42:22,2,18:22:864:2,18:80,693:-50.57,-56.7474,-127.212,0,-70.9167,-65.9482 0|0:47:22,7,18:22:846:7,18:275,642:-45.9079,-50.9417,-118.296,0,-68.0985,-64.2736 0|0:9:4,1,4:4:158:1,4:37,155:-11.7918,-12.8226,-25.5271,0,-13.0977,-12.0653 0|0:12:9,3,0:9:351:3,0:110,0:0,-1.93326,-30.2704,-2.70927,-31.1735,-31.8071 dDocent_Contig_13976 44 . G C 2225.8 . AB=0.637681;ABP=14.3712;AC=6;AF=0.75;AN=8;AO=68;CIGAR=1X;DP=93;DPB=93;DPRA=0;EPP=150.67;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2727;QR=1003;RO=25;RPL=0;RPP=150.67;RPPR=57.2971;RPR=68;RUN=1;SAF=68;SAP=150.67;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:52:19,33:19:764:33:1310:-102.509,0,-53.4257 0/1:17:6,11:6:239:11:446:-35.3781,0,-16.7669 1/1:14:0,14:0:0:14:562:-50.9204,-4.21442,0 1/1:10:0,10:0:0:10:409:-37.1706,-3.0103,0 dDocent_Contig_13977 27 . A C 250.804 . AB=0.384615;ABP=6.01695;AC=2;AF=0.25;AN=8;AO=10;CIGAR=1X;DP=41;DPB=41;DPRA=1.73333;EPP=24.725;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=395;QR=1231;RO=31;RPL=0;RPP=24.725;RPPR=70.3259;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:13:13,0:13:511:0:0:0,-3.91339,-46.338 0/1:9:5,4:5:196:4:161:-12.1662,0,-15.305 0/1:17:11,6:11:443:6:234:-16.3118,0,-35.1082 0/0:2:2,0:2:81:0:0:0,-0.60206,-7.68573 dDocent_Contig_13978 10 . C G 106.887 . AB=0.155556;ABP=49.3833;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=178;DPB=178;DPRA=1.01504;EPP=18.2106;EPPR=374.332;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=284;QR=6815;RO=171;RPL=0;RPP=18.2106;RPPR=374.332;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=171;SRP=374.332;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:77:77,0:77:3050:0:0:0,-23.1793,-274.576 0/0:40:40,0:40:1597:0:0:0,-12.0412,-143.964 0/1:45:38,7:38:1519:7:284:-12.3876,0,-123.403 0/0:16:16,0:16:649:0:0:0,-4.81648,-58.7428 dDocent_Contig_13979 8 . T C 312.793 . AB=0.302326;ABP=17.6046;AC=2;AF=0.25;AN=8;AO=13;CIGAR=1X2M1X;DP=51;DPB=51;DPRA=1.79167;EPP=31.2394;EPPR=65.983;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=510;QR=1134;RO=29;RPL=0;RPP=31.2394;RPPR=65.983;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:8:8,0,0:8:314:0,0:0,0:0,-2.40824,-28.6256,-2.40824,-28.6256,-28.6256 0|1:4:2,2,0:2:78:2,0:79,0:-6.29351,0,-6.19935,-6.89557,-6.80141,-13.3048 0|1:25:11,8,6:11:433:8,6:316,236:-22.6933,0,-33.2121,-6.59564,-16.2107,-40.4088 0|0:14:8,3,3:8:309:3,3:115,122:-7.66657,-0.647598,-25.1074,0,-15.9417,-24.4766 dDocent_Contig_13980 14 . C T 312.916 . AB=0.309524;ABP=16.2459;AC=3;AF=0.375;AN=8;AO=13;CIGAR=1X2M1X;DP=44;DPB=44;DPRA=7;EPP=31.2394;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=524;QR=1220;RO=31;RPL=0;RPP=31.2394;RPPR=70.3259;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:10:9,1:9:354:1:40:-0.985379,0,-29.209 0|1:9:2,7:2:82:7:286:-23.4055,0,-5.07041 0|1:23:18,5:18:702:5:198:-11.2733,0,-56.5827 0|0:2:2,0:2:82:0:0:0,-0.60206,-7.77968 dDocent_Contig_13981 59 . G A 870.922 . AB=0.4;ABP=11.2619;AC=4;AF=0.5;AN=8;AO=38;CIGAR=1X;DP=95;DPB=95;DPRA=0;EPP=85.5263;EPPR=126.784;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1353;QR=2213;RO=57;RPL=38;RPP=85.5263;RPPR=126.784;RPR=0;RUN=1;SAF=38;SAP=85.5263;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:46:24,22:24:939:22:784:-57.0225,0,-70.9695 0/1:22:17,5:17:653:5:175:-9.46678,0,-52.4782 0/1:18:9,9:9:350:9:330:-24.6271,0,-26.4415 0/1:9:7,2:7:271:2:64:-3.3691,0,-22.0448 dDocent_Contig_13982 26 . C G 246.951 . AB=0.307692;ABP=15.538;AC=3;AF=0.375;AN=8;AO=12;CIGAR=1X;DP=40;DPB=40;DPRA=13;EPP=29.068;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.785714;PAO=0;PQA=0;PQR=0;PRO=0;QA=453;QR=1132;RO=28;RPL=0;RPP=29.068;RPPR=63.8115;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:15,5:15:605:5:188:-11.2573,0,-48.7679 0/1:11:6,5:6:242:5:199:-14.9772,0,-18.8456 0/1:8:6,2:6:245:2:66:-3.85647,0,-20.0212 0/0:1:1,0:1:40:0:0:0,-0.30103,-3.99568 dDocent_Contig_13983 19 . G T 31.536 . AB=0.222222;ABP=9.04217;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=18;DPB=18;DPRA=2;EPP=7.35324;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.9375;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=646;RO=16;RPL=0;RPP=7.35324;RPPR=37.7539;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 0/0:8:8,0:8:324:0:0:0,-2.40824,-29.5288 0/1:9:7,2:7:281:2:81:-4.97646,0,-22.9527 0/0:1:1,0:1:41:0:0:0,-0.30103,-4.09457 dDocent_Contig_13984 11 . G T 218.675 . AB=0.25;ABP=24.725;AC=2;AF=0.25;AN=8;AO=12;CIGAR=1X;DP=91;DPB=91;DPRA=1.26316;EPP=29.068;EPPR=174.557;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.833333;PAIREDR=0.531646;PAO=0;PQA=0;PQR=0;PRO=0;QA=488;QR=3125;RO=79;RPL=0;RPP=29.068;RPPR=174.557;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=79;SRP=174.557;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:32:30,2:30:1191:2:82:0,-1.85328,-99.6839 0/0:19:19,0:19:746:0:0:0,-5.71957,-67.4498 0/1:19:12,7:12:466:7:284:-20.2144,0,-36.5621 0/1:21:18,3:18:722:3:122:-5.05086,0,-58.9837 dDocent_Contig_13985 11 . C A 14454 . AB=0.632588;ABP=98.5967;AC=7;AF=0.875;AN=8;AO=396;CIGAR=1X5M;DP=626;DPB=672.5;DPRA=0;EPP=845.629;EPPR=129.096;GTI=0;LEN=1;MEANALT=6.75;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.941919;PAIREDR=0.919355;PAO=0;PQA=0;PQR=0;PRO=0;QA=15751;QR=2415;RO=62;RPL=0;RPP=862.913;RPPR=137.642;RPR=396;RUN=1;SAF=394;SAP=845.629;SAR=2;SRF=61;SRP=129.096;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:222:12,32,155:12:465:32,155:1265,6140:-567.614,-467.126,-495.691,-65.9043,0,-57.4427 1|1:194:12,45,114:12:475:45,114:1754,4546:-474.173,-335.273,-360.821,-103.416,0,-108.194 0|1:143:30,21,82:30:1158:21,82:819,3290:-262.054,-204.04,-292.809,0,-28.0452,-70.4079 1|1:67:8,10,45:8:317:10,45:389,1775:-148.959,-119.941,-143.024,-5.32712,0,-17.8799 dDocent_Contig_13986 42 . C T 45.3802 . AB=0.117647;ABP=24.5973;AC=3;AF=0.5;AN=6;AO=3;CIGAR=1X;DP=26;DPB=26;DPRA=1.125;EPP=9.52472;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=52;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.695652;PAO=0;PQA=0;PQR=0;PRO=0;QA=121;QR=916;RO=23;RPL=0;RPP=9.52472;RPPR=52.9542;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:15,2:15:609:2:81:-2.56822,0,-50.0304 0/0:8:8,0:8:307:0:0:0,-2.40824,-27.983 ./.:.:.:.:.:.:.:. 1/1:1:0,1:0:0:1:40:-3.45449,-0.30103,0 dDocent_Contig_13987 21 . C A 217.705 . AB=0.166667;ABP=20.3821;AC=0;AF=0;AN=8;AO=3;CIGAR=1X1M1X;DP=72;DPB=72;DPRA=3.6;EPP=9.52472;EPPR=126.784;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.912281;PAO=0;PQA=0;PQR=0;PRO=0;QA=109;QR=2267;RO=57;RPL=0;RPP=9.52472;RPPR=126.784;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:18:11,3,4:11:439:3,4:109,162:-10.0707,-4.50024,-39.7458,0,-27.289,-34.9768 0|0:36:29,0,7:29:1164:0,7:0,284:-15.0963,-23.8262,-119.734,0,-96.312,-94.2048 0|0:13:12,0,1:12:464:0,1:0,40:-0.0822893,-3.69465,-41.789,0,-38.4929,-38.1919 0|0:5:5,0,0:5:200:0,0:0,0:0,-1.50515,-18.3795,-1.50515,-18.3795,-18.3795 dDocent_Contig_13988 127 . A G 388.549 . AB=0.457143;ABP=3.56868;AC=4;AF=0.5;AN=8;AO=16;CIGAR=1X;DP=35;DPB=35;DPRA=0;EPP=37.7539;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=613;QR=648;RO=18;RPL=0;RPP=37.7539;RPPR=42.0968;RPR=16;RUN=1;SAF=0;SAP=37.7539;SAR=16;SRF=0;SRP=42.0968;SRR=18;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:8:6,2:6:218:2:69:-4.14442,0,-17.5622 0/1:9:6,3:6:209:3:116:-8.10624,0,-16.437 0/1:14:3,10:3:104:10:388:-31.1926,0,-5.59778 0/1:4:3,1:3:117:1:40:-2.79156,0,-9.70626 dDocent_Contig_13989 7 . C A 8930.36 . AB=0.241379;ABP=558.982;AC=2;AF=0.25;AN=8;AO=231;CIGAR=1X1M2X1M1X3M;DP=957;DPB=956.889;DPRA=0;EPP=504.62;EPPR=667.481;GTI=0;LEN=1;MEANALT=8.5;MQM=59.2641;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=0.974026;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=8873;QR=11736;RO=306;RPL=0;RPP=504.62;RPPR=667.481;RPR=231;RUN=1;SAF=231;SAP=504.62;SAR=0;SRF=306;SRP=667.481;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:423:159,74,131,44:159:6095:74,131,44:2851,5150,1723:-375.224,-189.265,-667.218,0,-266.407,-460.797,-281.491,-547.897,-358.634,-768.476 1|0:289:65,96,71,31:65:2496:96,71,31:3695,2811,1237:-309.924,-26.4039,-202.389,-98.2031,0,-281.717,-227.615,-129.412,-201.213,-423.17 0|0:131:52,23,37,13:52:2001:23,37,13:851,1444,510:-103.03,-49.8312,-207.2,0,-95.449,-153.164,-76.7408,-172.183,-122.36,-237.122 0|1:114:30,38,28,14:30:1144:38,28,14:1476,1099,524:-112.256,0,-82.4091,-31.0895,-3.64819,-116.509,-78.3856,-50.9462,-82.0357,-168.018 dDocent_Contig_13991 12 . C T 375.982 . AB=0.258065;ABP=34.5317;AC=1;AF=0.125;AN=8;AO=16;CIGAR=1X;DP=135;DPB=135;DPRA=2.54795;EPP=37.7539;EPPR=261.416;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.3193;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.957983;PAO=0;PQA=0;PQR=0;PRO=0;QA=637;QR=4792;RO=119;RPL=0;RPP=37.7539;RPPR=261.416;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=119;SRP=261.416;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:62:46,16:46:1866:16:637:-38.9962,0,-149.474 0/0:47:47,0:47:1895:0:0:0,-14.1484,-170.743 0/0:9:9,0:9:365:0:0:0,-2.70927,-29.2688 0/0:17:17,0:17:666:0:0:0,-5.11751,-60.2632 dDocent_Contig_13992 49 . A T 47.8271 . AB=0.5;ABP=3.0103;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=58;DPB=58;DPRA=3.53333;EPP=13.8677;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.2;PAIREDR=0.509434;PAO=0;PQA=0;PQR=0;PRO=0;QA=189;QR=2114;RO=53;RPL=5;RPP=13.8677;RPPR=118.098;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:20:19,1:19:748:1:41:0,-1.92603,-63.5467 0/0:29:27,2:27:1089:2:67:0,-2.36918,-91.9349 0/1:4:2,2:2:79:2:81:-6.48161,0,-6.29312 0/0:5:5,0:5:198:0:0:0,-1.50515,-18.1958 dDocent_Contig_13993 10 . C T 408.082 . AB=0.185484;ABP=109.553;AC=3;AF=0.375;AN=8;AO=23;CIGAR=1X;DP=142;DPB=142;DPRA=2.2963;EPP=52.9542;EPPR=261.416;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=916;QR=4749;RO=119;RPL=0;RPP=52.9542;RPPR=261.416;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=119;SRP=261.416;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:64:53,11:53:2105:11:445:-21.1396,0,-170.372 0/1:35:28,7:28:1129:7:276:-14.6698,0,-91.3564 0/1:25:20,5:20:805:5:195:-10.3967,0,-65.242 0/0:18:18,0:18:710:0:0:0,-5.41854,-64.2243 dDocent_Contig_13994 43 . G C 348.774 . AB=0.441176;ABP=4.03217;AC=5;AF=0.625;AN=8;AO=16;CIGAR=1X;DP=35;DPB=35;DPRA=0;EPP=37.7539;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.9375;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=546;QR=590;RO=19;RPL=0;RPP=37.7539;RPPR=44.2683;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:9,8:9:282:8:278:-20.2404,0,-20.5695 0/1:2:1,1:1:35:1:35:-2.89657,0,-2.89657 0/1:15:9,6:9:273:6:200:-13.8119,0,-20.351 1/1:1:0,1:0:0:1:33:-3.29913,-0.30103,0 dDocent_Contig_13995 52 . T C 388.361 . AB=0.5;ABP=3.0103;AC=2;AF=0.333333;AN=6;AO=14;CIGAR=1X;DP=36;DPB=36;DPRA=1.75;EPP=33.4109;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=556;QR=875;RO=22;RPL=14;RPP=33.4109;RPPR=50.7827;RPR=0;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:8:8,0:8:326:0:0:0,-2.40824,-29.7099 ./.:.:.:.:.:.:.:. 0/1:24:12,12:12:468:12:474:-35.7835,0,-35.2448 0/1:4:2,2:2:81:2:82:-6.57556,0,-6.48161 dDocent_Contig_13997 34 . C T 213.303 . AB=0.210526;ABP=16.8392;AC=4;AF=0.5;AN=8;AO=8;CIGAR=1X;DP=30;DPB=30;DPRA=1.09524;EPP=20.3821;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=325;QR=887;RO=22;RPL=0;RPP=20.3821;RPPR=50.7827;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:12,3:12:484:3:122:-6.85704,0,-39.3954 0/1:4:3,1:3:123:1:41:-2.89045,0,-10.2607 0/0:7:7,0:7:280:0:0:0,-2.10721,-25.5712 1/1:4:0,4:0:0:4:162:-14.967,-1.20412,0 dDocent_Contig_13998 37 . G T 99.2311 . AB=0.189189;ABP=34.0565;AC=3;AF=0.375;AN=8;AO=7;CIGAR=1X;DP=47;DPB=47;DPRA=1.23333;EPP=18.2106;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=281;QR=1603;RO=40;RPL=0;RPP=18.2106;RPPR=89.8692;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:10:10,0:10:395:0:0:0,-3.0103,-35.9032 0/1:21:17,4:17:688:4:163:-8.7368,0,-55.9281 0/1:13:11,2:11:438:2:82:-3.86629,0,-35.861 0/1:3:2,1:2:82:1:36:-2.69518,0,-6.87659 dDocent_Contig_13999 21 . C T 418.538 . AB=0.333333;ABP=10.2485;AC=1;AF=0.125;AN=8;AO=10;CIGAR=1X2M4D1X;DP=57;DPB=51.5;DPRA=15;EPP=24.725;EPPR=79.0118;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=401;QR=1400;RO=35;RPL=0;RPP=24.725;RPPR=79.0118;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:30:16,10,4:16:639:10,4:401,163:-28.2182,0,-49.6133,-19.5855,-39.1747,-71.0104 0|0:19:12,0,6:12:480:0,6:0,246:-16.6921,-20.3045,-59.8386,0,-39.5312,-37.725 0|0:6:5,0,1:5:200:0,1:0,41:-2.28839,-3.79354,-20.2601,0,-16.8744,-16.5734 0|0:2:2,0,0:2:81:0,0:0,0:0,-0.60206,-7.68573,-0.60206,-7.68573,-7.68573 dDocent_Contig_14001 110 . A T 1854.84 . AB=0.611111;ABP=10.7311;AC=6;AF=0.75;AN=8;AO=68;CIGAR=1X2M;DP=96;DPB=96;DPRA=0;EPP=150.67;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1.25;MQM=56.5;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2322;QR=843;RO=25;RPL=0;RPP=150.67;RPPR=57.2971;RPR=68;RUN=1;SAF=0;SAP=150.67;SAR=68;SRF=0;SRP=57.2971;SRR=25;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:36:13,0,23:13:450:0,23:0,797:-60.641,-64.5544,-101.127,0,-36.9179,-29.9942 1|1:24:0,0,24:0:0:0,24:0,812:-73.2665,-73.2665,-73.2665,-7.22472,-7.22472,0 0|1:27:10,0,17:10:324:0,17:0,583:-44.3417,-47.352,-73.4867,0,-26.4648,-21.3473 1|1:9:2,3,4:2:69:3,4:103,130:-12.633,-4.86705,-9.57634,-2.75272,0,-7.15504 dDocent_Contig_14002 11 . T A 2154.58 . AB=0.721649;ABP=44.4026;AC=4;AF=0.5;AN=8;AO=70;CIGAR=1X1M1X;DP=97;DPB=97;DPRA=0;EPP=155.013;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2786;QR=1083;RO=27;RPL=0;RPP=155.013;RPPR=61.6401;RPR=70;RUN=1;SAF=70;SAP=155.013;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:32:7,25:7:282:25:998:-80.4847,0,-16.12 0|1:26:13,13:13:520:13:521:-39.4103,0,-39.321 0|1:30:5,25:5:200:25:988:-80.1886,0,-9.34864 0|1:9:2,7:2:81:7:279:-22.772,0,-4.97646 dDocent_Contig_14003 20 . T G 1373.17 . AB=0.738462;ABP=35.1147;AC=3;AF=0.5;AN=6;AO=48;CIGAR=1M20I3M1X;DP=65;DPB=257;DPRA=0;EPP=107.241;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=44.8542;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1847;QR=673;RO=17;RPL=0;RPP=107.241;RPPR=39.9253;RPR=48;RUN=1;SAF=48;SAP=107.241;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. 0|1:42:7,35:7:277:35:1362:-106.736,0,-12.6567 0|1:14:8,6:8:315:6:217:-15.3132,0,-24.5008 0|1:9:2,7:2:81:7:268:-20.7907,0,-4.97646 dDocent_Contig_14005 106 . N C 65.5196 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=3X1I2M;DP=2;DPB=2.4;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=57.5;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=69;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. 1|1:2:0,2:0:0:2:69:-6.55088,-0.60206,0 .:.:.:.:.:.:.:. dDocent_Contig_14006 47 . G A 1585.49 . AB=0.616279;ABP=13.1102;AC=4;AF=0.5;AN=8;AO=53;CIGAR=1X;DP=86;DPB=86;DPRA=0;EPP=118.098;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.848485;PAO=0;PQA=0;PQR=0;PRO=0;QA=2116;QR=1286;RO=33;RPL=0;RPP=118.098;RPPR=74.6689;RPR=53;RUN=1;SAF=53;SAP=118.098;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:33:11,22:11:420:22:886:-70.1155,0,-28.2113 0/1:41:17,24:17:662:24:951:-73.5519,0,-47.5635 0/1:9:4,5:4:163:5:197:-15.396,0,-12.3492 0/1:3:1,2:1:41:2:82:-6.87659,0,-3.19148 dDocent_Contig_14007 23 . C T 379.984 . AB=0.164557;ABP=80.2213;AC=2;AF=0.25;AN=8;AO=13;CIGAR=1X3M2X2M1X3M1X;DP=116;DPB=116.769;DPRA=1.71739;EPP=31.2394;EPPR=189.757;GTI=0;LEN=1;MEANALT=4.5;MQM=57.8462;MQMR=60;NS=4;NUMALT=2;ODDS=1.38778e-17;PAIRED=0;PAIREDR=0.906977;PAO=0;PQA=0;PQR=0;PRO=0;QA=501;QR=3352;RO=86;RPL=0;RPP=31.2394;RPPR=189.757;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=86;SRP=189.757;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:73:56,10,2:56:2185:10,2:381,80:-14.4137,0,-176.654,-24.9986,-173.395,-204.031 0|0:23:23,0,0:23:891:0,0:0,0:0,-6.92369,-80.5025,-6.92369,-80.5025,-80.5025 0|0:14:6,0,7:6:236:0,7:0,261:-19.2524,-21.0586,-40.4845,0,-19.459,-17.3518 0|1:6:1,3,1:1:40:3,1:120,38:-9.63751,0,-2.44754,-6.84583,-0.225212,-9.85561 dDocent_Contig_14008 18 . A G 402.516 . AB=0.355556;ABP=11.1654;AC=3;AF=0.5;AN=6;AO=16;CIGAR=1X;DP=45;DPB=45;DPRA=0;EPP=37.7539;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=646;QR=1116;RO=29;RPL=0;RPP=37.7539;RPPR=65.983;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 0/1:13:10,3:10:401:3:123:-7.5514,0,-32.5361 0/1:15:4,11:4:132:11:441:-35.5305,0,-7.6805 0/1:17:15,2:15:583:2:82:-2.66217,0,-47.6863 dDocent_Contig_14009 80 . G A 53.4182 . AB=0.126437;ABP=108.464;AC=3;AF=0.375;AN=8;AO=11;CIGAR=1X;DP=141;DPB=141;DPRA=0.537037;EPP=26.8965;EPPR=285.302;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.976923;PAO=0;PQA=0;PQR=0;PRO=0;QA=390;QR=4692;RO=130;RPL=11;RPP=26.8965;RPPR=285.302;RPR=0;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=130;SRP=285.302;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:53:46,7:46:1682:7:245:-6.43433,0,-135.706 0/0:54:54,0:54:1918:0:0:0,-16.2556,-172.88 0/1:19:17,2:17:619:2:74:-1.30631,0,-50.3241 0/1:15:13,2:13:473:2:71:-2.22661,0,-38.3955 dDocent_Contig_14010 26 . A T 108.177 . AB=0.242424;ABP=22.0271;AC=3;AF=0.375;AN=8;AO=8;CIGAR=1X;DP=39;DPB=39;DPRA=1.83333;EPP=20.3821;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=279;QR=1217;RO=31;RPL=0;RPP=20.3821;RPPR=70.3259;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:16,3:16:626:3:101:-3.70174,0,-50.9521 0/1:5:3,2:3:117:2:73:-5.42615,0,-9.40476 0/1:9:6,3:6:241:3:105:-7.08551,0,-19.357 0/0:6:6,0:6:233:0:0:0,-1.80618,-21.3374 dDocent_Contig_14011 8 . T C 114.088 . AB=0.3125;ABP=7.89611;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=53;DPB=53;DPRA=1.2973;EPP=13.8677;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=195;QR=1857;RO=48;RPL=0;RPP=13.8677;RPPR=107.241;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:22:22,0:22:852:0:0:0,-6.62266,-77.0025 0/0:9:9,0:9:347:0:0:0,-2.70927,-31.5897 0/1:16:11,5:11:424:5:195:-13.1077,0,-33.6977 0/0:6:6,0:6:234:0:0:0,-1.80618,-21.4311 dDocent_Contig_14012 8 . T G 154.265 . AB=0.216216;ABP=28.8919;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=134;DPB=134;DPRA=1.14433;EPP=20.3821;EPPR=276.616;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.8413;NS=4;NUMALT=1;ODDS=0;PAIRED=0.75;PAIREDR=0.928571;PAO=0;PQA=0;PQR=0;PRO=0;QA=310;QR=4849;RO=126;RPL=0;RPP=20.3821;RPPR=276.616;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=126;SRP=276.616;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:48:48,0:48:1850:0:0:0,-14.4494,-166.723 0/1:37:29,8:29:1126:8:310:-17.1255,0,-90.5031 0/0:31:31,0:31:1184:0:0:0,-9.33193,-106.859 0/0:18:18,0:18:689:0:0:0,-5.41854,-62.3432 dDocent_Contig_14013 27 . C T 37.8597 . AB=0.285714;ABP=5.80219;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X;DP=23;DPB=23;DPRA=1.3125;EPP=7.35324;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=80;QR=833;RO=21;RPL=0;RPP=7.35324;RPPR=48.6112;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:8:8,0:8:321:0:0:0,-2.40824,-29.257 0/1:7:5,2:5:200:2:80:-5.48458,0,-16.2718 0/0:6:6,0:6:232:0:0:0,-1.80618,-21.2467 0/0:2:2,0:2:80:0:0:0,-0.60206,-7.59179 dDocent_Contig_14014 25 . A G 155.227 . AB=0.333333;ABP=7.35324;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=36;DPB=36;DPRA=3;EPP=16.0391;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=244;QR=1167;RO=30;RPL=0;RPP=16.0391;RPPR=68.1545;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:12,6:12:466:6:244:-16.9203,0,-36.8694 0/0:12:12,0:12:467:0:0:0,-3.61236,-42.378 0/0:4:4,0:4:160:0:0:0,-1.20412,-14.7834 0/0:2:2,0:2:74:0:0:0,-0.60206,-7.02486 dDocent_Contig_14015 63 . T A 120.298 . AB=0.3;ABP=9.95901;AC=2;AF=0.25;AN=8;AO=7;CIGAR=1X;DP=47;DPB=47;DPRA=0.412698;EPP=18.2106;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=0.857143;PAIREDR=0.775;PAO=0;PQA=0;PQR=0;PRO=0;QA=238;QR=1511;RO=40;RPL=7;RPP=18.2106;RPPR=89.8692;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:6:5,1:5:191:1:8:0,-1.00618,-16.7574 0/1:10:7,3:7:275:3:117:-7.89991,0,-22.1082 0/0:21:21,0:21:778:0:0:0,-6.32163,-70.3238 0/1:10:7,3:7:267:3:113:-7.52773,0,-21.3798 dDocent_Contig_14016 11 . C A 81.025 . AB=0.172414;ABP=30.0414;AC=2;AF=0.25;AN=8;AO=5;CIGAR=1X;DP=40;DPB=40;DPRA=2.63636;EPP=13.8677;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.914286;PAO=0;PQA=0;PQR=0;PRO=0;QA=198;QR=1401;RO=35;RPL=0;RPP=13.8677;RPPR=79.0118;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:5:2,3:2:81:3:118:-9.49736,0,-6.18058 0/1:24:22,2:22:883:2:80:-0.367071,0,-72.5527 0/0:10:10,0:10:397:0:0:0,-3.0103,-36.0868 0/0:1:1,0:1:40:0:0:0,-0.30103,-3.99568 dDocent_Contig_14017 14 . C T 111.387 . AB=0.12;ABP=65.7224;AC=2;AF=0.25;AN=8;AO=6;CIGAR=2X3M1X;DP=54;DPB=54;DPRA=4.16667;EPP=16.0391;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1.66667;MQM=36.6667;MQMR=58.2439;NS=4;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0.95122;PAO=0;PQA=0;PQR=0;PRO=0;QA=237;QR=1530;RO=41;RPL=0;RPP=16.0391;RPPR=92.0407;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:21:16,1,4:16:594:1,4:40,156:-8.07973,-10.5532,-58.8392,0,-46.3153,-47.4685 0|1:27:20,4,3:20:752:4,3:163,116:-5.77359,0,-60.3977,-2.25595,-52.0728,-62.9757 0|0:4:4,0,0:4:146:0,0:0,0:0,-1.20412,-10.9677,-1.20412,-10.9677,-10.9677 0|1:2:1,1,0:1:38:1,0:34,0:-2.65245,0,-3.19521,-2.95348,-3.49624,-6.09713 dDocent_Contig_14018 10 . A G 80.5793 . AB=0.333333;ABP=5.9056;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=130;DPB=130;DPRA=0.625;EPP=16.0391;EPPR=272.273;GTI=0;LEN=1;MEANALT=1;MQM=42;MQMR=59.1048;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.741935;PAO=0;PQA=0;PQR=0;PRO=0;QA=222;QR=4991;RO=124;RPL=0;RPP=16.0391;RPPR=272.273;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=124;SRP=272.273;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:68:68,0:68:2726:0:0:0,-20.47,-244.845 0/0:38:36,2:36:1458:2:70:0,-5.05048,-125.029 0/0:12:12,0:12:487:0:0:0,-3.61236,-44.148 0/1:12:8,4:8:320:4:152:-9.7569,0,-25.5377 dDocent_Contig_14020 98 . N T 738.264 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=25;CIGAR=1X;DP=25;DPB=25;DPRA=0;EPP=57.2971;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=810;QR=0;RO=0;RPL=25;RPP=57.2971;RPPR=0;RPR=0;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:19:0,19:0:0:19:617:-55.8386,-5.71957,0 1/1:6:0,6:0:0:6:193:-17.6868,-1.80618,0 dDocent_Contig_14021 17 . C A 67.4682 . AB=0.3;ABP=6.48466;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=2X;DP=27;DPB=27;DPRA=1.17647;EPP=9.52472;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.916667;PAO=0;PQA=0;PQR=0;PRO=0;QA=121;QR=953;RO=24;RPL=0;RPP=9.52472;RPPR=55.1256;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:10:7,3:7:279:3:121:-8.26969,0,-22.4697 0|0:7:7,0:7:280:0:0:0,-2.10721,-25.57 0|0:10:10,0:10:394:0:0:0,-3.0103,-35.8168 .:.:.:.:.:.:.:. dDocent_Contig_14022 16 . C G 54.3043 . AB=0.153846;ABP=43.6001;AC=3;AF=0.375;AN=8;AO=7;CIGAR=1X2M1X4M;DP=59;DPB=59;DPRA=0;EPP=18.2106;EPPR=111.584;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=275;QR=1943;RO=50;RPL=0;RPP=18.2106;RPPR=111.584;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:29:24,3,2:24:943:3,2:117,79:-2.38948,0,-76.6558,-3.11125,-71.0578,-80.0726 0|0:20:19,1,0:19:741:1,0:40,0:0,-2.02492,-63.021,-5.71957,-63.322,-66.6176 0|1:7:5,2,0:5:185:2,0:78,0:-5.29609,0,-14.9013,-6.80124,-15.5033,-21.9206 0|1:3:2,1,0:2:74:1,0:40,0:-3.09259,0,-6.12234,-3.69465,-6.42337,-9.72839 dDocent_Contig_14023 173 . C T 80.4344 . AB=0.6;ABP=3.44459;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=30;DPB=30;DPRA=0.4;EPP=9.52472;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=1088;RO=27;RPL=3;RPP=9.52472;RPPR=61.6401;RPR=0;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=61.6401;SRR=27;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 0/0:14:14,0:14:568:0:0:0,-4.21442,-51.4626 0/0:11:11,0:11:439:0:0:0,-3.31133,-39.8642 0/1:5:2,3:2:81:3:122:-9.86734,0,-6.18058 dDocent_Contig_14024 15 . T C 1880.96 . AB=0.719298;ABP=26.8203;AC=6;AF=0.75;AN=8;AO=60;CIGAR=1M1D2M1X;DP=77;DPB=65;DPRA=0;EPP=133.299;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2348;QR=668;RO=17;RPL=0;RPP=133.299;RPPR=39.9253;RPR=60;RUN=1;SAF=60;SAP=133.299;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:45:6,39:6:237:39:1555:-126.644,0,-8.15627 1|1:18:1,17:1:40:17:639:-53.8399,-1.42286,0 1|1:2:0,2:0:0:2:80:-7.59179,-0.60206,0 0|1:12:10,2:10:391:2:74:-3.41341,0,-31.9343 dDocent_Contig_14027 8 . T G 2369.77 . AB=0.56;ABP=6.13722;AC=5;AF=0.625;AN=8;AO=79;CIGAR=1X;DP=123;DPB=123;DPRA=0;EPP=174.557;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=0.835443;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3009;QR=1712;RO=44;RPL=0;RPP=174.557;RPPR=98.5551;RPR=79;RUN=1;SAF=79;SAP=174.557;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:23:0,23:0:0:23:873:-78.8886,-6.92369,0 0/1:57:23,34:23:897:34:1299:-100.04,0,-63.8898 0/1:36:20,16:20:777:16:610:-44.4008,0,-59.421 0/1:7:1,6:1:38:6:227:-18.6855,0,-1.69006 dDocent_Contig_14028 9 . A C 248.318 . AB=0.133333;ABP=20.5268;AC=3;AF=0.375;AN=8;AO=2;CIGAR=1X3M2X1M;DP=68;DPB=68;DPRA=0.5;EPP=7.35324;EPPR=107.241;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=80;QR=1885;RO=48;RPL=0;RPP=7.35324;RPPR=107.241;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:15:6,4,2,2:6:233:4,2,2:148,79,80:-10.2885,0,-17.9353,-5.59068,-12.6378,-24.1354,-5.50006,-12.5475,-18.1445,-24.0454 0|0:30:30,0,0,0:30:1180:0,0,0:0,0,0:0,-9.0309,-106.49,-9.0309,-106.49,-106.49,-9.0309,-106.49,-106.49,-106.49 0|1:13:10,0,2,0:10:393:0,2,0:0,77,0:-3.30187,-6.31217,-38.6394,0,-32.3186,-31.7165,-6.31217,-38.6394,-32.3186,-38.6394 0|1:10:2,6,2,0:2:79:6,2,0:211,79,0:-16.5381,0,-4.69478,-10.6284,-3.47436e-08,-16.5381,-17.1401,-6.50096,-17.1401,-23.6476 dDocent_Contig_14029 10 . A G 206.222 . AB=0.19403;ABP=57.4916;AC=3;AF=0.375;AN=8;AO=16;CIGAR=1X;DP=107;DPB=107;DPRA=0;EPP=37.7539;EPPR=200.614;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.945055;PAO=0;PQA=0;PQR=0;PRO=0;QA=620;QR=3625;RO=91;RPL=0;RPP=37.7539;RPPR=200.614;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=91;SRP=200.614;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:24,6:24:965:6:228:-11.8513,0,-78.116 0/1:30:25,5:25:995:5:201:-9.43978,0,-80.8142 0/0:40:37,3:37:1461:3:119:0,-0.946185,-120.645 0/1:7:5,2:5:204:2:72:-4.7287,0,-16.6368 dDocent_Contig_14030 79 . G A 140.116 . AB=0.666667;ABP=5.18177;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=37;DPB=37;DPRA=0.964286;EPP=16.0391;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=201;QR=1027;RO=31;RPL=6;RPP=16.0391;RPPR=70.3259;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:6:6,0:6:198:0:0:0,-1.80618,-18.1441 0/1:9:3,6:3:105:6:201:-15.71,0,-7.08689 0/0:1:1,0:1:35:0:0:0,-0.30103,-3.49863 0/0:21:21,0:21:689:0:0:0,-6.32163,-62.316 dDocent_Contig_14031 73 . T A 721.481 . AB=0.571429;ABP=5.18177;AC=2;AF=0.25;AN=8;AO=28;CIGAR=1X2M;DP=63;DPB=63;DPRA=3.5;EPP=63.8115;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=993;QR=1126;RO=33;RPL=28;RPP=63.8115;RPPR=74.6689;RPR=0;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:26:8,2,16:8:277:2,16:69,567:-43.7915,-40.595,-62.502,0,-16.9073,-17.6963 0|1:23:11,0,12:11:356:0,12:0,426:-31.7543,-35.0656,-63.7683,0,-29.0412,-25.4288 0|0:11:11,0,0:11:388:0,0:0,0:0,-3.31133,-35.2579,-3.31133,-35.2579,-35.2579 0|0:3:3,0,0:3:105:0,0:0,0:0,-0.90309,-9.79609,-0.90309,-9.79609,-9.79609 dDocent_Contig_14032 43 . A G 34.848 . AB=0.25;ABP=7.35324;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X;DP=28;DPB=28;DPRA=1.2;EPP=7.35324;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=80;QR=1053;RO=26;RPL=0;RPP=7.35324;RPPR=59.4686;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:6:6,0:6:241:0:0:0,-1.80618,-22.0663 0/0:12:12,0:12:489:0:0:0,-3.61236,-44.3611 0/0:2:2,0:2:82:0:0:0,-0.60206,-7.77968 0/1:8:6,2:6:241:2:80:-5.18333,0,-19.6569 dDocent_Contig_14033 81 . C A 80.0977 . AB=0.3125;ABP=7.89611;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=38;DPB=38;DPRA=0;EPP=18.2106;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=227;QR=1069;RO=31;RPL=7;RPP=18.2106;RPPR=70.3259;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 0/0:22:20,2:20:697:2:53:0,-1.58899,-58.0208 0/1:10:7,3:7:232:3:105:-6.78586,0,-18.1943 0/1:6:4,2:4:140:2:69:-4.74648,0,-11.1387 dDocent_Contig_14034 16 . G A 53.6297 . AB=0.666667;ABP=3.73412;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=18;DPB=18;DPRA=0.4;EPP=7.35324;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=649;RO=16;RPL=0;RPP=7.35324;RPPR=37.7539;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:3:1,2:1:41:2:82:-6.87659,0,-3.19148 0/0:5:5,0:5:202:0:0:0,-1.50515,-18.5615 0/0:10:10,0:10:406:0:0:0,-3.0103,-36.9006 ./.:.:.:.:.:.:.:. dDocent_Contig_14036 59 . C A 338.419 . AB=0.294118;ABP=21.7871;AC=3;AF=0.375;AN=8;AO=15;CIGAR=1X2M1X;DP=52;DPB=52;DPRA=17;EPP=35.5824;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.933333;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=594;QR=1436;RO=37;RPL=15;RPP=35.5824;RPPR=83.3548;RPR=0;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:18:13,5:13:516:5:202:-13.1435,0,-41.3675 0|1:24:17,7:17:649:7:274:-17.8021,0,-51.513 0|1:9:6,3:6:233:3:118:-8.29362,0,-18.6297 0|0:1:1,0:1:38:0:0:0,-0.30103,-3.79727 dDocent_Contig_14037 60 . T C 973.813 . AB=0.470588;ABP=3.26577;AC=4;AF=0.666667;AN=6;AO=31;CIGAR=1X;DP=49;DPB=49;DPRA=0;EPP=70.3259;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1223;QR=707;RO=18;RPL=31;RPP=70.3259;RPPR=42.0968;RPR=0;RUN=1;SAF=31;SAP=70.3259;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:15:0,15:0:0:15:586:-53.0753,-4.51545,0 0/1:25:12,13:12:473:13:516:-39.258,0,-35.3925 0/1:9:6,3:6:234:3:121:-8.57093,0,-18.7174 ./.:.:.:.:.:.:.:. dDocent_Contig_14038 68 . A G 902.835 . AB=0.548387;ABP=4.27115;AC=4;AF=0.5;AN=8;AO=34;CIGAR=1X;DP=62;DPB=62;DPRA=0;EPP=76.8404;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.970588;PAIREDR=0.964286;PAO=0;PQA=0;PQR=0;PRO=0;QA=1277;QR=1090;RO=28;RPL=34;RPP=76.8404;RPPR=63.8115;RPR=0;RUN=1;SAF=34;SAP=76.8404;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:12,17:12:459:17:628:-48.1169,0,-32.9274 0/1:19:9,10:9:358:10:386:-29.3774,0,-26.8622 0/1:9:5,4:5:201:4:154:-11.5242,0,-15.7612 0/1:5:2,3:2:72:3:109:-8.66294,0,-5.33122 dDocent_Contig_14039 65 . T G 311.451 . AB=0.375;ABP=7.35324;AC=4;AF=0.5;AN=8;AO=13;CIGAR=1X;DP=34;DPB=34;DPRA=11;EPP=31.2394;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=479;QR=772;RO=21;RPL=13;RPP=31.2394;RPPR=48.6112;RPR=0;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:14,3:14:514:3:111:-5.23641,0,-41.4835 0/1:15:6,9:6:221:9:333:-25.8067,0,-15.7314 0/0:1:1,0:1:37:0:0:0,-0.30103,-3.69783 1/1:1:0,1:0:0:1:35:-3.49863,-0.30103,0 dDocent_Contig_14040 32 . C T 154.026 . AB=0.333333;ABP=7.35324;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=59;DPB=59;DPRA=1.31707;EPP=16.0391;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=246;QR=2097;RO=53;RPL=0;RPP=16.0391;RPPR=118.098;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:21:21,0:21:826:0:0:0,-6.32163,-74.6552 0/0:12:12,0:12:488:0:0:0,-3.61236,-44.2713 0/1:18:12,6:12:463:6:246:-17.1016,0,-36.5933 0/0:8:8,0:8:320:0:0:0,-2.40824,-29.1666 dDocent_Contig_14041 82 . T G 343.71 . AB=0.576923;ABP=4.34659;AC=3;AF=0.375;AN=8;AO=17;CIGAR=1X;DP=49;DPB=49;DPRA=0;EPP=39.9253;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=550;QR=1116;RO=32;RPL=17;RPP=39.9253;RPPR=72.4974;RPR=0;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:23:21,2:21:733:2:70:0,-0.276294,-59.6461 0/1:11:1,10:1:35:10:322:-25.9804,0,-0.187299 0/1:10:9,1:9:313:1:35:-0.488329,0,-25.4968 0/1:5:1,4:1:35:4:123:-9.86933,0,-1.99348 dDocent_Contig_14042 134 . T C 58.1048 . AB=0;ABP=0;AC=2;AF=0.25;AN=8;AO=3;CIGAR=1X;DP=56;DPB=56;DPRA=0.75;EPP=9.52472;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=93;QR=1927;RO=53;RPL=0;RPP=9.52472;RPPR=118.098;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=118.098;SRR=53;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:31:31,0:31:1124:0:0:0,-9.33193,-101.469 0/0:22:21,1:21:766:1:35:0,-3.12403,-65.767 0/0:1:1,0:1:37:0:0:0,-0.30103,-3.69783 1/1:2:0,2:0:0:2:58:-5.50862,-0.60206,0 dDocent_Contig_14043 8 . G A 1982.25 . AB=0.495726;ABP=3.02886;AC=5;AF=0.625;AN=8;AO=69;CIGAR=1X;DP=128;DPB=128;DPRA=0;EPP=152.842;EPPR=131.127;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2639;QR=2271;RO=59;RPL=0;RPP=152.842;RPPR=131.127;RPR=69;RUN=1;SAF=69;SAP=152.842;SAR=0;SRF=59;SRP=131.127;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:49:24,25:24:922:25:963:-72.2338,0,-68.5444 0/1:48:28,20:28:1078:20:774:-55.5389,0,-82.8752 0/1:20:7,13:7:271:13:491:-38.515,0,-18.7358 1/1:11:0,11:0:0:11:411:-37.3354,-3.31133,0 dDocent_Contig_14044 7 . C G 574.773 . AB=0.553191;ABP=4.16534;AC=3;AF=0.375;AN=8;AO=26;CIGAR=1X;DP=64;DPB=64;DPRA=0.921569;EPP=59.4686;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1.66667;MQM=53.0385;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.730769;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=850;QR=1383;RO=36;RPL=0;RPP=59.4686;RPPR=81.1833;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:4,7:4:156:7:216:-14.2552,0,-10.7242 0/1:25:6,18:6:230:18:597:-46.6147,0,-13.624 0/0:17:17,0:17:649:0:0:0,-5.11751,-58.743 0/1:10:9,1:9:348:1:37:-0.687529,0,-28.6701 dDocent_Contig_14045 78 . A C 167.424 . AB=0.636364;ABP=4.78696;AC=1;AF=0.125;AN=8;AO=10;CIGAR=1X;DP=78;DPB=78;DPRA=1.51613;EPP=24.725;EPPR=150.67;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=342;QR=2275;RO=68;RPL=10;RPP=24.725;RPPR=150.67;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=68;SRP=150.67;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:36:33,3:33:1090:3:104:0,-1.13399,-88.6941 0/0:26:26,0:26:876:0:0:0,-7.82678,-79.15 0/1:11:4,7:4:135:7:238:-18.4413,0,-9.17197 0/0:5:5,0:5:174:0:0:0,-1.50515,-16.002 dDocent_Contig_14046 10 . G T 104.782 . AB=0.238095;ABP=15.5221;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=54;DPB=54;DPRA=1.90909;EPP=13.8677;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=198;QR=1856;RO=49;RPL=0;RPP=13.8677;RPPR=109.412;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:16,5:16:613:5:198:-11.8761,0,-49.1858 0/0:21:21,0:21:785:0:0:0,-6.32163,-70.9693 0/0:5:5,0:5:194:0:0:0,-1.50515,-17.8327 0/0:7:7,0:7:264:0:0:0,-2.10721,-24.1174 dDocent_Contig_14047 7 . C G 314.895 . AB=0.147059;ABP=39.7976;AC=3;AF=0.375;AN=8;AO=14;CIGAR=1X;DP=58;DPB=58;DPRA=2.86667;EPP=33.4109;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=472;QR=1670;RO=44;RPL=0;RPP=33.4109;RPPR=98.5551;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:9:0,9:0:0:9:312:-28.4123,-2.70927,0 0/0:3:3,0:3:116:0:0:0,-0.90309,-10.8177 0/0:12:12,0:12:445:0:0:0,-3.61236,-40.3914 0/1:34:29,5:29:1109:5:160:-4.4747,0,-89.8774 dDocent_Contig_14048 7 . C T 103.265 . AB=0.294118;ABP=9.26925;AC=2;AF=0.25;AN=8;AO=5;CIGAR=1X;DP=43;DPB=43;DPRA=0.653846;EPP=13.8677;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.815789;PAO=0;PQA=0;PQR=0;PRO=0;QA=195;QR=1458;RO=38;RPL=0;RPP=13.8677;RPPR=85.5263;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:13:13,0:13:499:0:0:0,-3.91339,-45.2575 0/1:8:4,4:4:154:4:156:-12.009,0,-11.8252 0/0:13:13,0:13:496:0:0:0,-3.91339,-44.9864 0/1:9:8,1:8:309:1:39:-1.18729,0,-25.4638 dDocent_Contig_14049 63 . G A 2254.33 . AB=0.712644;ABP=37.1798;AC=4;AF=0.666667;AN=6;AO=72;CIGAR=1X;DP=97;DPB=97;DPRA=0;EPP=159.356;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2825;QR=968;RO=25;RPL=72;RPP=159.356;RPPR=57.2971;RPR=0;RUN=1;SAF=72;SAP=159.356;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:32:14,18:14:533:18:691:-52.8769,0,-38.6713 0/1:55:11,44:11:435:44:1739:-140.172,0,-22.9444 1/1:10:0,10:0:0:10:395:-35.9066,-3.0103,0 ./.:.:.:.:.:.:.:. dDocent_Contig_14052 72 . G A 87.8859 . AB=0.4;ABP=3.87889;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=49;DPB=49;DPRA=4.44444;EPP=13.8677;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=181;QR=1390;RO=44;RPL=5;RPP=13.8677;RPPR=98.5551;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:30:29,1:29:903:1:35:0,-5.53227,-78.0631 0/1:10:6,4:6:188:4:146:-10.4874,0,-14.2195 0/0:6:6,0:6:198:0:0:0,-1.80618,-18.1447 0/0:3:3,0:3:101:0:0:0,-0.90309,-9.42373 dDocent_Contig_14053 26 . T C 57.8231 . AB=0.16129;ABP=33.9012;AC=3;AF=0.375;AN=8;AO=5;CIGAR=1X;DP=48;DPB=48;DPRA=0.607843;EPP=13.8677;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.6;PAIREDR=0.837209;PAO=0;PQA=0;PQR=0;PRO=0;QA=202;QR=1710;RO=43;RPL=0;RPP=13.8677;RPPR=96.3836;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:17:17,0:17:682:0:0:0,-5.11751,-61.7097 0/1:5:4,1:4:163:1:40:-2.49053,0,-13.5533 0/1:10:9,1:9:356:1:39:-0.886264,0,-29.3891 0/1:16:13,3:13:509:3:123:-6.64831,0,-41.3335 dDocent_Contig_14054 37 . G A 353.261 . AB=0.283019;ABP=24.6841;AC=3;AF=0.375;AN=8;AO=17;CIGAR=1X;DP=90;DPB=90;DPRA=0;EPP=39.9253;EPPR=161.528;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.647059;PAIREDR=0.808219;PAO=0;PQA=0;PQR=0;PRO=0;QA=682;QR=2906;RO=73;RPL=0;RPP=39.9253;RPPR=161.528;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=73;SRP=161.528;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:37:35,2:35:1402:2:82:0,-3.35843,-118.653 0/1:24:22,2:22:855:2:81:-0.461014,0,-70.0306 0/1:11:6,5:6:243:5:196:-14.7009,0,-18.9368 0/1:18:10,8:10:406:8:323:-24.02,0,-31.4817 dDocent_Contig_14055 197 . G C 131.683 . AB=0.185185;ABP=26.2531;AC=4;AF=0.5;AN=8;AO=7;CIGAR=1X;DP=32;DPB=32;DPRA=3.22222;EPP=18.2106;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=262;QR=883;RO=25;RPL=7;RPP=18.2106;RPPR=57.2971;RPR=0;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=57.2971;SRR=25;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:10,2:10:361:2:77:-3.69678,0,-29.2182 0/1:15:12,3:12:436:3:108:-5.55773,0,-35.0612 0/0:3:3,0:3:86:0:0:0,-0.90309,-8.02025 1/1:2:0,2:0:0:2:77:-7.30914,-0.60206,0 dDocent_Contig_14057 63 . A G 269.989 . AB=0.351351;ABP=10.1116;AC=2;AF=0.25;AN=8;AO=14;CIGAR=1X;DP=70;DPB=70;DPRA=0.962963;EPP=33.4109;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=491;QR=2011;RO=56;RPL=14;RPP=33.4109;RPPR=124.613;RPR=0;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:18:18,0:18:656:0:0:0,-5.41854,-59.3719 0/1:21:12,9:12:415:9:317:-22.5468,0,-31.3555 0/1:16:12,4:12:438:4:137:-7.84984,0,-34.9463 0/0:15:14,1:14:502:1:37:0,-0.817621,-41.8179 dDocent_Contig_14058 54 . T G 344.873 . AB=0.4;ABP=6.05036;AC=3;AF=0.5;AN=6;AO=14;CIGAR=1X;DP=35;DPB=35;DPRA=0;EPP=33.4109;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=548;QR=802;RO=21;RPL=14;RPP=33.4109;RPPR=48.6112;RPR=0;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:12,9:12:449:9:345:-25.0828,0,-34.4235 0/1:11:8,3:8:322:3:122:-8.06116,0,-26.0374 0/1:3:1,2:1:31:2:81:-6.78264,0,-2.19636 ./.:.:.:.:.:.:.:. dDocent_Contig_14059 63 . A G 34.5448 . AB=0.222222;ABP=9.04217;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=17;DPB=17;DPRA=2.25;EPP=7.35324;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=594;RO=15;RPL=2;RPP=7.35324;RPPR=35.5824;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=15;SRP=35.5824;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:7,2:7:285:2:81:-4.97646,0,-23.3149 0/0:7:7,0:7:268:0:0:0,-2.10721,-24.4803 ./.:.:.:.:.:.:.:. 0/0:1:1,0:1:41:0:0:0,-0.30103,-4.09457 dDocent_Contig_14060 7 . C T 157.795 . AB=0.195652;ABP=40.0197;AC=1;AF=0.125;AN=8;AO=11;CIGAR=1X;DP=159;DPB=159;DPRA=1.89091;EPP=26.8965;EPPR=324.388;GTI=0;LEN=1;MEANALT=1;MQM=51;MQMR=53.3243;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.662162;PAO=0;PQA=0;PQR=0;PRO=0;QA=423;QR=5655;RO=148;RPL=0;RPP=26.8965;RPPR=324.388;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=148;SRP=324.388;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:28:28,0:28:1079:0:0:0,-8.42884,-86.9205 0/1:46:37,9:37:1417:9:346:-17.4785,0,-110.015 0/0:58:56,2:56:2133:2:77:0,-10.1902,-163.955 0/0:27:27,0:27:1026:0:0:0,-8.12781,-89.3851 dDocent_Contig_14061 40 . T C 644.919 . AB=0.396825;ABP=8.83536;AC=4;AF=0.5;AN=8;AO=25;CIGAR=1X;DP=63;DPB=63;DPRA=0;EPP=57.2971;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=0.92;PAIREDR=0.921053;PAO=0;PQA=0;PQR=0;PRO=0;QA=993;QR=1500;RO=38;RPL=0;RPP=57.2971;RPPR=85.5263;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:14,6:14:564:6:238:-15.7726,0,-45.0826 0/1:14:6,8:6:216:8:320:-24.9538,0,-15.5739 0/1:18:10,8:10:397:8:319:-23.6584,0,-30.669 0/1:11:8,3:8:323:3:116:-7.50495,0,-26.1274 dDocent_Contig_14062 44 . A T 2467.14 . AB=0.597826;ABP=10.6577;AC=5;AF=0.625;AN=8;AO=86;CIGAR=1X;DP=126;DPB=126;DPRA=0;EPP=189.757;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3205;QR=1517;RO=39;RPL=0;RPP=189.757;RPPR=87.6977;RPR=86;RUN=1;SAF=86;SAP=189.757;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:39:22,16:22:860:16:578:-40.799,0,-66.171 0/1:43:11,32:11:431:32:1202:-95.5196,0,-26.2007 1/1:34:3,31:3:108:31:1183:-96.6917,-0.162007,0 0/1:10:3,7:3:118:7:242:-19.1009,0,-7.99242 dDocent_Contig_14063 12 . G A 228.033 . AB=0.444444;ABP=3.49285;AC=1;AF=0.125;AN=8;AO=10;CIGAR=1X;DP=55;DPB=55;DPRA=8.83333;EPP=24.725;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=57.2;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.9;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=401;QR=1781;RO=45;RPL=0;RPP=24.725;RPPR=100.727;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:10,8:10:391:8:325:-24.2009,0,-30.1254 0/0:17:16,1:16:631:1:36:0,-2.06297,-54.0655 0/0:18:17,1:17:680:1:40:0,-1.42286,-57.5322 0/0:2:2,0:2:79:0:0:0,-0.60206,-7.49763 dDocent_Contig_14065 71 . T C 156.584 . AB=0.211538;ABP=40.5935;AC=2;AF=0.25;AN=8;AO=11;CIGAR=1M1D1M1X;DP=89;DPB=86.25;DPRA=1.40541;EPP=26.8965;EPPR=172.385;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.909091;PAIREDR=0.987179;PAO=0;PQA=0;PQR=0;PRO=0;QA=378;QR=2591;RO=78;RPL=11;RPP=26.8965;RPPR=172.385;RPR=0;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=78;SRP=172.385;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:32:32,0:32:1088:0:0:0,-9.63296,-98.2278 0|1:40:31,9:31:1016:9:308:-16.0113,0,-79.6999 0|1:12:10,2:10:339:2:70:-3.03504,0,-27.2269 0|0:5:5,0:5:148:0:0:0,-1.50515,-13.6129 dDocent_Contig_14066 63 . G A 352.284 . AB=0.340426;ABP=13.4056;AC=4;AF=0.5;AN=8;AO=16;CIGAR=1X;DP=47;DPB=47;DPRA=0;EPP=37.7539;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=602;QR=1168;RO=31;RPL=16;RPP=37.7539;RPPR=70.3259;RPR=0;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:11,5:11:425:5:192:-12.832,0,-33.7877 0/1:10:5,5:5:192:5:187:-14.1816,0,-14.6395 0/1:11:6,5:6:207:5:184:-13.6044,0,-15.6545 0/1:10:9,1:9:344:1:39:-0.886264,0,-28.3076 dDocent_Contig_14068 4 . T C 67.6004 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=2;CIGAR=1X9I1M2X;DP=3;DPB=9.75;DPRA=2;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=49;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=65;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. 1|1:2:0,2:0:0:2:65:-6.15662,-0.60206,0 1|1:1:0,0:0:0:0:0:0,0,0 .:.:.:.:.:.:.:. dDocent_Contig_14069 44 . T C 224.495 . AB=0.261905;ABP=23.691;AC=3;AF=0.375;AN=8;AO=11;CIGAR=1X;DP=51;DPB=51;DPRA=1.55556;EPP=26.8965;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.9;PAO=0;PQA=0;PQR=0;PRO=0;QA=437;QR=1340;RO=40;RPL=0;RPP=26.8965;RPPR=89.8692;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:7:2,5:2:63:5:193:-15.6307,0,-3.87656 0/1:15:13,2:13:426:2:81:-3.17028,0,-34.1396 0/1:20:16,4:16:541:4:163:-9.03783,0,-42.9898 0/0:9:9,0:9:310:0:0:0,-2.70927,-28.2327 dDocent_Contig_14070 60 . G C 83.1696 . AB=0.266667;ABP=10.1038;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=80;DPB=80;DPRA=0.692308;EPP=11.6962;EPPR=168.042;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=8.67362e-19;PAIRED=0;PAIREDR=0.710526;PAO=0;PQA=0;PQR=0;PRO=0;QA=154;QR=2989;RO=76;RPL=4;RPP=11.6962;RPPR=168.042;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=76;SRP=168.042;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:11,4:11:439:4:154:-9.71487,0,-35.3491 0/0:45:45,0:45:1761:0:0:0,-13.5463,-158.701 0/0:5:5,0:5:204:0:0:0,-1.50515,-18.744 0/0:15:15,0:15:585:0:0:0,-4.51545,-52.9871 dDocent_Contig_14071 9 . T C 1538.62 . AB=0.0846154;ABP=197.841;AC=5;AF=0.625;AN=8;AO=11;CIGAR=2X6M1X;DP=146;DPB=165.889;DPRA=0;EPP=26.8965;EPPR=105.07;GTI=0;LEN=1;MEANALT=4.33333;MQM=60;MQMR=60;NS=4;NUMALT=5;ODDS=0;PAIRED=1;PAIREDR=1;PAO=14.75;PQA=590.25;PQR=0;PRO=0;QA=423;QR=1849;RO=47;RPL=0;RPP=26.8965;RPPR=105.07;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:66:35,0,0,3,18,7:35:1373:0,0,3,18,7:0,0,120,708,273:-47.6064,-58.1424,-171.018,-58.1424,-171.018,-171.018,-48.2982,-161.168,-161.168,-160.265,0,-112.792,-112.792,-102.943,-107.373,-35.7225,-148.581,-148.581,-138.732,-90.3587,-146.474 1|1:37:8,10,2,10,4,3:8:320:10,2,10,4,3:344,74,370,158,111:-29.2102,-3.707,-27.0582,-25.7204,-24.1721,-51.4835,-1.53802,0,-22.0062,-24.893,-18.6139,-17.0671,-39.0824,-14.9003,-43.7762,-22.5395,-20.992,-43.007,-18.8257,-35.9016,-48.0018 1|1:27:0,9,0,9,8,1:0:0:9,0,9,8,1:330,0,349,316,39:-55.5151,-28.5525,-25.8433,-55.5151,-28.5525,-55.5151,-26.9547,0,-26.9547,-24.2455,-29.5076,-2.54814,-29.5076,-0.942489,-27.0994,-52.309,-25.3469,-52.309,-23.7485,-26.3012,-52.008 0|1:16:4,2,0,10,0,0:4:156:2,0,10,0,0:74,0,372,0,0:-28.9132,-24.0677,-36.2877,-30.1173,-36.8898,-42.9405,0,-6.72716,-12.7533,-9.74303,-30.1173,-36.8898,-42.9405,-12.7533,-42.9405,-30.1173,-36.8898,-42.9405,-12.7533,-42.9405,-42.9405 dDocent_Contig_14072 27 . A G 37.0888 . AB=0.113636;ABP=60.0608;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=107;DPB=107;DPRA=3.11538;EPP=18.2106;EPPR=220.158;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.9;PAO=0;PQA=0;PQR=0;PRO=0;QA=283;QR=3986;RO=100;RPL=0;RPP=18.2106;RPPR=220.158;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=100;SRP=220.158;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:37:35,2:35:1388:2:80:0,-3.54632,-117.589 0/1:44:39,5:39:1565:5:203:-5.40774,0,-127.846 0/0:21:21,0:21:834:0:0:0,-6.32163,-75.3705 0/0:5:5,0:5:199:0:0:0,-1.50515,-18.2874 dDocent_Contig_14073 10 . T C 2518.36 . AB=0.68;ABP=38.1882;AC=4;AF=0.5;AN=8;AO=85;CIGAR=1X;DP=125;DPB=125;DPRA=0;EPP=179.002;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=58.9765;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=0.976471;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3319;QR=1469;RO=40;RPL=0;RPP=187.585;RPPR=89.8692;RPR=85;RUN=1;SAF=84;SAP=179.002;SAR=1;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:37:11,26:11:408:26:1026:-81.4936,0,-25.9296 0/1:57:19,38:19:696:38:1456:-114.123,0,-45.8018 0/1:14:2,12:2:72:12:481:-39.4184,0,-2.6223 0/1:17:8,9:8:293:9:356:-24.1732,0,-21.6011 dDocent_Contig_14076 139 . T G 571.736 . AB=0.162162;ABP=39.6906;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X1M1X;DP=50;DPB=50;DPRA=2.05556;EPP=16.0391;EPPR=50.7827;GTI=0;LEN=1;MEANALT=2;MQM=49;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=208;QR=747;RO=22;RPL=0;RPP=16.0391;RPPR=50.7827;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=50.7827;SRR=22;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:14:0,3,11:0:0:3,11:105,366:-38.3062,-29.9502,-29.0471,-8.69664,0,-5.38531 0|0:23:12,3,8:12:413:3,8:103,276:-18.8121,-14.0743,-46.715,0,-25.1949,-31.1371 0|0:9:9,0,0:9:299:0,0:0,0:0,-2.70927,-27.2339,-2.70927,-27.2339,-27.2339 0|0:4:1,0,2:1:35:0,2:0,70:-5.39548,-5.69651,-8.54438,0,-2.84852,-2.24646 dDocent_Contig_14077 11 . T G 406.228 . AB=0.316667;ABP=20.5268;AC=3;AF=0.375;AN=8;AO=19;CIGAR=2X;DP=66;DPB=66;DPRA=3.33333;EPP=44.2683;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.319149;PAO=0;PQA=0;PQR=0;PRO=0;QA=699;QR=1824;RO=47;RPL=0;RPP=44.2683;RPPR=105.07;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:21:8,13:8:311:13:473:-36.5864,0,-22.0309 0|1:17:15,2:15:566:2:75:-2.00283,0,-46.1516 0|1:22:18,4:18:713:4:151:-7.33512,0,-57.877 0|0:6:6,0:6:234:0:0:0,-1.80618,-21.4303 dDocent_Contig_14079 25 . A G 313.025 . AB=0.263158;ABP=30.7823;AC=3;AF=0.375;AN=8;AO=17;CIGAR=1X;DP=86;DPB=86;DPRA=0;EPP=39.9253;EPPR=152.842;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=0.985507;PAO=0;PQA=0;PQR=0;PRO=0;QA=663;QR=2769;RO=69;RPL=0;RPP=39.9253;RPPR=152.842;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=69;SRP=152.842;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:23,8:23:924:8:311:-19.0173,0,-74.1319 0/0:29:27,2:27:1081:2:77:0,-1.42167,-90.2711 0/1:15:11,4:11:441:4:157:-9.99223,0,-35.5296 0/1:11:8,3:8:323:3:118:-7.69087,0,-26.1274 dDocent_Contig_14080 82 . A T 574.951 . AB=0.358974;ABP=16.4846;AC=4;AF=0.5;AN=8;AO=28;CIGAR=1X;DP=78;DPB=78;DPRA=0;EPP=63.8115;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=967;QR=1732;RO=50;RPL=28;RPP=63.8115;RPPR=111.584;RPR=0;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:13,17:13:453:17:592:-44.5768,0,-32.0719 0/1:19:15,4:15:523:4:140:-7.22536,0,-41.681 0/1:21:16,5:16:547:5:166:-8.94564,0,-43.2325 0/1:8:6,2:6:209:2:69:-4.14442,0,-16.7428 dDocent_Contig_14081 8 . G T 162.215 . AB=0.27027;ABP=19.9713;AC=3;AF=0.375;AN=8;AO=10;CIGAR=1M1I1M1X;DP=39;DPB=42.3333;DPRA=6.16667;EPP=24.725;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=50.7;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=382;QR=1118;RO=29;RPL=0;RPP=24.725;RPPR=65.983;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:13:10,3:10:386:3:114:-6.71859,0,-31.1839 0|1:12:9,3:9:345:3:115:-4.3709,0,-27.7967 0|1:12:8,4:8:311:4:153:-10.5292,0,-24.742 0|0:2:2,0:2:76:0:0:0,-0.60206,-7.21467 dDocent_Contig_14082 22 . A C 76.418 . AB=0.15625;ABP=35.8538;AC=2;AF=0.25;AN=8;AO=5;CIGAR=1X;DP=38;DPB=38;DPRA=5.33333;EPP=13.8677;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=204;QR=1297;RO=33;RPL=0;RPP=13.8677;RPPR=74.6689;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:12,1:12:478:1:41:-0.181177,0,-39.456 0/1:19:15,4:15:603:4:163:-9.33886,0,-48.8884 0/0:3:3,0:3:116:0:0:0,-0.90309,-10.8163 0/0:3:3,0:3:100:0:0:0,-0.90309,-9.3242 dDocent_Contig_14083 8 . G A 133.371 . AB=0.183673;ABP=45.5977;AC=1;AF=0.125;AN=8;AO=12;CIGAR=1X;DP=197;DPB=197;DPRA=0.989899;EPP=29.068;EPPR=404.733;GTI=0;LEN=1;MEANALT=1;MQM=40;MQMR=40;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=462;QR=7064;RO=185;RPL=0;RPP=29.068;RPPR=404.733;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=185;SRP=404.733;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:49:46,3:46:1764:3:113:0,-4.78905,-139.204 0/0:36:36,0:36:1357:0:0:0,-10.8371,-115.211 0/0:63:63,0:63:2417:0:0:0,-18.9649,-204.568 0/1:49:40,9:40:1526:9:349:-15.0361,0,-114.721 dDocent_Contig_14085 7 . C T 97.0631 . AB=0.294118;ABP=9.26925;AC=2;AF=0.25;AN=8;AO=7;CIGAR=1X;DP=95;DPB=95;DPRA=0.264151;EPP=18.2106;EPPR=194.1;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=270;QR=3375;RO=88;RPL=0;RPP=18.2106;RPPR=194.1;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=88;SRP=194.1;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:53:53,0:53:2043:0:0:0,-15.9546,-184.103 0/0:25:23,2:23:873:2:76:0,-0.311076,-71.6751 0/1:10:7,3:7:268:3:116:-7.8074,0,-21.4731 0/1:7:5,2:5:191:2:78:-5.29626,0,-15.4513 dDocent_Contig_14087 42 . G A 1306.51 . AB=0.576923;ABP=7.01917;AC=4;AF=0.5;AN=8;AO=45;CIGAR=1X;DP=78;DPB=78;DPRA=0;EPP=38.1882;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1776;QR=1323;RO=33;RPL=9;RPP=38.1882;RPPR=74.6689;RPR=36;RUN=1;SAF=45;SAP=100.727;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:12,12:12:472:12:464:-34.8721,0,-35.5999 0/1:20:2,18:2:82:18:716:-58.7425,0,-1.75908 0/1:24:13,11:13:528:11:441:-32.8202,0,-40.6422 0/1:10:6,4:6:241:4:155:-11.3144,0,-19.0555 dDocent_Contig_14088 36 . T C 82.0344 . AB=0.178571;ABP=28.1373;AC=2;AF=0.25;AN=8;AO=5;CIGAR=1X;DP=59;DPB=59;DPRA=0.903226;EPP=13.8677;EPPR=120.27;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=195;QR=2095;RO=54;RPL=0;RPP=13.8677;RPPR=120.27;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:12,4:12:460:4:156:-9.59923,0,-36.9265 0/0:27:27,0:27:1055:0:0:0,-8.12781,-95.2442 0/0:4:4,0:4:160:0:0:0,-1.20412,-14.7834 0/1:12:11,1:11:420:1:39:-0.284205,0,-34.5378 dDocent_Contig_14090 105 . N T 65.5375 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=3X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=69;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. 1|1:2:0,2:0:0:2:69:-6.55266,-0.60206,0 dDocent_Contig_14091 36 . G T 640.25 . AB=0.442308;ABP=4.51363;AC=3;AF=0.375;AN=8;AO=24;CIGAR=1X4M;DP=84;DPB=84;DPRA=0;EPP=55.1256;EPPR=126.784;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.541667;PAIREDR=0.631579;PAO=0;PQA=0;PQR=0;PRO=0;QA=921;QR=2076;RO=57;RPL=0;RPP=55.1256;RPPR=126.784;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:24:23,0,1:23:833:0,1:0,38:0,-6.92369,-74.9123,-3.42745,-71.7951,-71.494 0|1:18:14,0,3:14:521:0,3:0,114:-5.1273,-9.34172,-51.9788,0,-42.6285,-41.7254 0|1:34:14,0,20:14:505:0,20:0,769:-59.3004,-63.5148,-104.715,0,-41.5703,-35.5497 0|1:8:6,2,0:6:217:2,0:78,0:-4.99506,0,-17.4729,-6.80124,-18.0749,-24.4935 dDocent_Contig_14092 70 . G A 310.192 . AB=0.533333;ABP=3.29983;AC=3;AF=0.375;AN=8;AO=16;CIGAR=1X;DP=34;DPB=34;DPRA=2.5;EPP=37.7539;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=495;QR=620;RO=18;RPL=16;RPP=37.7539;RPPR=42.0968;RPR=0;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:3,7:3:103:7:230:-18.0123,0,-6.59967 0/0:4:4,0:4:138:0:0:0,-1.20412,-12.7604 0/1:12:6,6:6:206:6:182:-13.0674,0,-15.2644 0/1:8:5,3:5:173:3:83:-5.33734,0,-13.5019 dDocent_Contig_14093 35 . T G 61.6433 . AB=0.16;ABP=53.2147;AC=4;AF=0.5;AN=8;AO=8;CIGAR=2X;DP=50;DPB=50;DPRA=0;EPP=20.3821;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.75;PAIREDR=0.690476;PAO=0;PQA=0;PQR=0;PRO=0;QA=301;QR=1654;RO=42;RPL=0;RPP=20.3821;RPPR=94.2121;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:11:9,2:9:352:2:78:-4.09214,0,-28.7266 0|1:11:9,2:9:356:2:76:-3.90334,0,-29.0895 0|1:13:11,2:11:436:2:72:-2.92185,0,-35.6826 0|1:15:13,2:13:510:2:75:-2.60465,0,-41.7299 dDocent_Contig_14096 209 . N G 148.755 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=7.37776;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=161;QR=0;RO=0;RPL=4;RPP=11.6962;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:4:0,4:0:0:4:161:-14.8753,-1.20412,0 ./.:.:.:.:.:.:.:. dDocent_Contig_14097 157 . C T 541.656 . AB=0.349206;ABP=15.4532;AC=3;AF=0.375;AN=8;AO=22;CIGAR=1X;DP=65;DPB=65;DPRA=10.5;EPP=50.7827;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=858;QR=1668;RO=43;RPL=0;RPP=50.7827;RPPR=96.3836;RPR=22;RUN=1;SAF=0;SAP=50.7827;SAR=22;SRF=0;SRP=96.3836;SRR=43;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:28,3:28:1083:3:120:-1.85597,0,-88.4329 0/1:26:11,15:11:427:15:584:-45.0653,0,-30.9555 0/1:6:2,4:2:78:4:154:-12.4264,0,-5.59712 0/0:2:2,0:2:80:0:0:0,-0.60206,-7.59179 dDocent_Contig_14099 159 . G T 30.4688 . AB=0.333333;ABP=4.45795;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1M1I1X;DP=50;DPB=52;DPRA=1.94118;EPP=11.6962;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=140;QR=1770;RO=46;RPL=4;RPP=11.6962;RPPR=102.898;RPR=0;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=102.898;SRR=46;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:15:15,0:15:574:0:0:0,-4.51545,-51.9988 0|0:27:25,2:25:963:2:71:0,-1.38673,-80.2289 0|1:6:4,2:4:156:2:69:-4.74514,0,-12.6111 0|0:2:2,0:2:77:0:0:0,-0.60206,-7.30914 dDocent_Contig_14100 46 . G T 65.7093 . AB=0.333333;ABP=5.18177;AC=1;AF=0.25;AN=4;AO=3;CIGAR=1X;DP=19;DPB=19;DPRA=0.9;EPP=9.52472;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=121;QR=614;RO=16;RPL=3;RPP=9.52472;RPPR=37.7539;RPR=0;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:10:10,0:10:380:0:0:0,-3.0103,-34.5452 0/1:9:6,3:6:234:3:121:-8.57093,0,-18.7174 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_14101 80 . T A 73.7365 . AB=0.238095;ABP=15.5221;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=37;DPB=37;DPRA=0.65625;EPP=13.8677;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=183;QR=1151;RO=32;RPL=5;RPP=13.8677;RPPR=72.4974;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:16:16,0:16:565:0:0:0,-4.81648,-51.1781 0/1:19:15,4:15:549:4:146:-7.77814,0,-44.028 ./.:.:.:.:.:.:.:. 0/1:2:1,1:1:37:1:37:-3.09577,0,-3.09577 dDocent_Contig_14102 9 . A T 55.2868 . AB=0.25;ABP=9.52472;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=58;DPB=58;DPRA=0.782609;EPP=9.52472;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=8.67362e-19;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=113;QR=2005;RO=55;RPL=0;RPP=9.52472;RPPR=122.441;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:9,3:9:333:3:113:-6.92661,0,-26.7037 0/0:11:11,0:11:404:0:0:0,-3.31133,-36.7033 0/0:21:21,0:21:779:0:0:0,-6.32163,-70.4309 0/0:14:14,0:14:489:0:0:0,-4.21442,-44.3315 dDocent_Contig_14103 74 . C T 255.467 . AB=0.368421;ABP=8.7247;AC=3;AF=0.5;AN=6;AO=14;CIGAR=1X;DP=38;DPB=38;DPRA=0;EPP=33.4109;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=461;QR=857;RO=24;RPL=14;RPP=33.4109;RPPR=55.1256;RPR=0;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:12,5:12:430:5:171:-10.6084,0,-33.9226 0/1:19:11,8:11:391:8:259:-17.907,0,-29.8101 0/1:2:1,1:1:36:1:31:-2.49739,0,-2.99621 ./.:.:.:.:.:.:.:. dDocent_Contig_14104 8 . G A 217.47 . AB=0.183099;ABP=64.9431;AC=2;AF=0.25;AN=8;AO=14;CIGAR=1X3M;DP=103;DPB=103;DPRA=3.48148;EPP=33.4109;EPPR=189.757;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=542;QR=3296;RO=86;RPL=0;RPP=33.4109;RPPR=189.757;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=86;SRP=189.757;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:54:43,3,8:43:1647:3,8:117,311:-12.6125,-15.939,-150.194,0,-125.539,-132.749 0|0:23:22,0,1:22:841:0,1:0,39:0,-6.62266,-75.6173,-3.02713,-72.411,-72.11 0|1:17:12,0,5:12:464:0,5:0,192:-12.5325,-16.1449,-54.2589,0,-38.4985,-36.9933 0|0:9:9,0,0:9:344:0,0:0,0:0,-2.70927,-31.3172,-2.70927,-31.3172,-31.3172 dDocent_Contig_14106 28 . T C 132.941 . AB=0.352941;ABP=6.20364;AC=2;AF=0.25;AN=8;AO=6;CIGAR=1X;DP=31;DPB=31;DPRA=1.21429;EPP=16.0391;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=234;QR=1006;RO=25;RPL=0;RPP=16.0391;RPPR=57.2971;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:6:2,4:2:68:4:160:-12.9767,0,-4.64845 0/1:11:9,2:9:369:2:74:-3.71269,0,-30.2641 0/0:12:12,0:12:492:0:0:0,-3.61236,-44.6308 0/0:2:2,0:2:77:0:0:0,-0.60206,-7.3082 dDocent_Contig_14107 14 . G A 148.843 . AB=0.176471;ABP=49.3776;AC=2;AF=0.25;AN=8;AO=9;CIGAR=1X;DP=77;DPB=77;DPRA=1.96154;EPP=22.5536;EPPR=150.67;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.985294;PAO=0;PQA=0;PQR=0;PRO=0;QA=365;QR=2683;RO=68;RPL=0;RPP=22.5536;RPPR=150.67;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=68;SRP=150.67;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:35:28,7:28:1110:7:283:-15.3073,0,-89.6466 0/0:21:21,0:21:825:0:0:0,-6.32163,-74.559 0/1:16:14,2:14:551:2:82:-2.9632,0,-45.1132 0/0:5:5,0:5:197:0:0:0,-1.50515,-18.1058 dDocent_Contig_14108 10 . T G 66.8773 . AB=0.3;ABP=6.48466;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1M7I1X1M1X;DP=33;DPB=38.25;DPRA=1.30435;EPP=9.52472;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=119;QR=1119;RO=30;RPL=0;RPP=9.52472;RPPR=68.1545;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:10:7,3:7:267:3:119:-8.08509,0,-21.3823 0|0:16:16,0:16:585:0:0:0,-4.81648,-52.9743 0|0:6:6,0:6:228:0:0:0,-1.80618,-20.8845 0|0:1:1,0:1:39:0:0:0,-0.30103,-3.89656 dDocent_Contig_14109 12 . G A 873.74 . AB=0.0666667;ABP=76.4061;AC=4;AF=0.5;AN=8;AO=3;CIGAR=1X3M;DP=106;DPB=106;DPRA=0;EPP=9.52472;EPPR=128.956;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=119;QR=2297;RO=58;RPL=0;RPP=9.52472;RPPR=128.956;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:45:28,14,3,0:28:1117:14,3,0:537,119,0:-35.633,0,-87.7806,-34.2639,-82.1996,-125.364,-44.0618,-91.9951,-126.267,-136.063 0|1:43:21,16,0,6:21:819:16,0,6:614,0,232:-44.075,0,-62.5024,-50.3966,-67.3189,-117.716,-31.3435,-48.2673,-98.6633,-96.8571 0|1:10:6,3,0,1:6:241:3,0,1:116,0,41:-7.70476,0,-18.9493,-9.51094,-19.8524,-29.3759,-6.12108,-16.4672,-25.9905,-25.6894 0|1:8:3,3,0,1:3:120:3,0,1:102,0,40:-7.35917,0,-9.00904,-8.26226,-9.91213,-18.1677,-4.95373,-6.61257,-14.8678,-14.5668 dDocent_Contig_14110 8 . G A 148.188 . AB=0.4;ABP=4.31318;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=70;DPB=70;DPRA=0.375;EPP=18.2106;EPPR=139.813;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=269;QR=2405;RO=63;RPL=0;RPP=18.2106;RPPR=139.813;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=63;SRP=139.813;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 0/0:40:40,0:40:1517:0:0:0,-12.0412,-136.796 0/1:15:9,6:9:350:6:231:-16.6425,0,-27.3459 0/0:15:14,1:14:538:1:38:0,-0.718181,-44.9681 dDocent_Contig_14111 66 . A G 456.42 . AB=0;ABP=0;AC=4;AF=0.5;AN=8;AO=14;CIGAR=2X;DP=29;DPB=29;DPRA=1.07143;EPP=33.4109;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=528;QR=591;RO=15;RPL=14;RPP=33.4109;RPPR=35.5824;RPR=0;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=15;SRP=35.5824;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:13:1,12:1:32:12:451:-37.7306,-0.714077,0 0|0:6:6,0:6:239:0:0:0,-1.80618,-21.8839 0|0:8:8,0:8:320:0:0:0,-2.40824,-29.168 1|1:2:0,2:0:0:2:77:-7.30883,-0.60206,0 dDocent_Contig_14112 30 . A C 912.249 . AB=0.445946;ABP=4.88833;AC=4;AF=0.5;AN=8;AO=33;CIGAR=1X;DP=74;DPB=74;DPRA=0;EPP=74.6689;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1327;QR=1647;RO=41;RPL=0;RPP=74.6689;RPPR=92.0407;RPR=33;RUN=1;SAF=33;SAP=74.6689;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:13,4:13:528:4:161:-9.75797,0,-42.7494 0/1:18:6,12:6:242:12:484:-38.4911,0,-16.7384 0/1:26:14,12:14:568:12:477:-35.4521,0,-43.6349 0/1:13:8,5:8:309:5:205:-14.9216,0,-24.2564 dDocent_Contig_14113 20 . C T 42.323 . AB=0.2;ABP=14.7363;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X1M2I12M;DP=39;DPB=39.4286;DPRA=1.875;EPP=9.52472;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.735294;PAO=0;PQA=0;PQR=0;PRO=0;QA=112;QR=1338;RO=34;RPL=0;RPP=9.52472;RPPR=76.8404;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:11:10,0:10:394:0:0:0,-3.0103,-35.458 0|1:15:12,3:12:478:3:112:-5.93118,0,-38.8574 0|0:4:4,0:4:161:0:0:0,-1.20412,-14.8753 0|0:9:8,0:8:305:0:0:0,-2.40824,-27.4098 dDocent_Contig_14114 94 . C A 30.2627 . AB=0.142857;ABP=34.0313;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=51;DPB=51;DPRA=3.65217;EPP=11.6962;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.5;PAIREDR=0.978723;PAO=0;PQA=0;PQR=0;PRO=0;QA=139;QR=1646;RO=47;RPL=4;RPP=11.6962;RPPR=105.07;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:24,4:24:831:4:139:-4.42378,0,-66.6765 0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9037 0/0:9:9,0:9:318:0:0:0,-2.70927,-28.961 0/0:6:6,0:6:213:0:0:0,-1.80618,-19.5164 dDocent_Contig_14115 139 . G A 293.872 . AB=0.157895;ABP=22.325;AC=0;AF=0;AN=6;AO=3;CIGAR=2X;DP=38;DPB=38;DPRA=0;EPP=9.52472;EPPR=48.6112;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=113;QR=804;RO=21;RPL=0;RPP=9.52472;RPPR=48.6112;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=48.6112;SRR=21;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:19:12,3,4:12:456:3,4:113,124:-6.29615,-0.619892,-37.1668,0,-28.1408,-36.196 0|0:16:8,0,8:8:309:0,8:0,298:-22.3501,-24.7583,-50.144,0,-25.7647,-23.3565 0|0:3:1,0,2:1:39:0,2:0,75:-6.21701,-6.51804,-9.72889,0,-3.59553,-2.99347 .:.:.:.:.:.:.:. dDocent_Contig_14116 87 . C T 215.33 . AB=0.217391;ABP=34.9215;AC=3;AF=0.375;AN=8;AO=10;CIGAR=1M1X1M;DP=46;DPB=44.6667;DPRA=0;EPP=24.725;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=358;QR=1144;RO=32;RPL=10;RPP=24.725;RPPR=72.4974;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:16:11,4,1:11:395:4,1:138,36:-7.88811,0,-31.017,-8.25903,-29.2836,-40.1902 0|1:20:16,0,4:16:572:0,4:0,143:-7.20085,-12.0173,-58.6573,0,-46.9973,-45.7932 0|1:7:4,0,3:4:143:0,3:0,107:-7.87496,-9.07908,-20.7395,0,-12.0173,-11.1142 0|1:3:1,0,2:1:34:0,2:0,72:-5.93363,-6.23466,-8.98601,0,-3.09788,-2.49582 dDocent_Contig_14117 35 . G A 3585.09 . AB=0.318627;ABP=61.2994;AC=7;AF=0.875;AN=8;AO=65;CIGAR=7M1X1M;DP=204;DPB=210.556;DPRA=0;EPP=144.156;EPPR=76.8404;GTI=0;LEN=1;MEANALT=3.5;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2567;QR=1321;RO=34;RPL=0;RPP=144.156;RPPR=76.8404;RPR=65;RUN=1;SAF=65;SAP=144.156;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:91:19,6,30,35:19:728:6,30,35:236,1189,1413:-148.9,-135.207,-193.136,-56.7593,-97.0791,-107.461,-38.134,-78.4548,0,-87.3323 0|1:48:9,7,24,8:9:350:7,24,8:255,951,318:-74.017,-55.9046,-82.558,0,-7.94557,-21.5389,-50.543,-58.4832,-2.57681,-76.897 1|1:46:3,2,21,18:3:122:2,21,18:65,840,686:-114.493,-110.154,-119.616,-46.1928,-51.0183,-49.9378,-59.1414,-63.9653,0,-63.7874 1|1:19:3,4,8,4:3:121:4,8,4:162,316,150:-28.4869,-16.0275,-24.8006,-3.38692,0,-10.9566,-17.1148,-13.7297,-1.09441,-25.8859 dDocent_Contig_14118 15 . T A 1319.23 . AB=0.614286;ABP=10.9517;AC=1;AF=0.125;AN=8;AO=43;CIGAR=1X;DP=146;DPB=146;DPRA=2.76316;EPP=96.3836;EPPR=226.672;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1713;QR=4144;RO=103;RPL=0;RPP=96.3836;RPPR=226.672;RPR=43;RUN=1;SAF=43;SAP=96.3836;SAR=0;SRF=103;SRP=226.672;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:70:27,43:27:1065:43:1713:-133.321,0,-75.0604 0/0:70:70,0:70:2834:0:0:0,-21.0721,-255.151 0/0:4:4,0:4:163:0:0:0,-1.20412,-15.0584 0/0:2:2,0:2:82:0:0:0,-0.60206,-7.77968 dDocent_Contig_14121 60 . G A 1014.12 . AB=0.560606;ABP=5.11597;AC=4;AF=0.5;AN=8;AO=37;CIGAR=1X;DP=66;DPB=66;DPRA=0;EPP=83.3548;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1414;QR=1136;RO=29;RPL=37;RPP=83.3548;RPPR=65.983;RPR=0;RUN=1;SAF=37;SAP=83.3548;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:10,12:10:387:12:458:-34.9364,0,-28.5567 0/1:26:7,19:7:285:19:719:-57.1916,0,-18.1976 0/1:8:6,2:6:241:2:80:-5.18355,0,-19.6581 0/1:10:6,4:6:223:4:157:-11.4981,0,-17.4133 dDocent_Contig_14122 52 . C G 67.5921 . AB=0;ABP=0;AC=2;AF=0.25;AN=8;AO=2;CIGAR=1X;DP=40;DPB=40;DPRA=0.157895;EPP=7.35324;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=68;QR=1275;RO=38;RPL=2;RPP=7.35324;RPPR=85.5263;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:22:22,0:22:729:0:0:0,-6.62266,-65.9204 1/1:2:0,2:0:0:2:68:-6.45788,-0.60206,0 0/0:11:11,0:11:375:0:0:0,-3.31133,-34.0789 0/0:5:5,0:5:171:0:0:0,-1.50515,-15.7265 dDocent_Contig_14123 107 . N A 32.1863 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X3M1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=17;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=70;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. 1|1:2:0,2:0:0:2:70:-3.21728,-0.60206,0 .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. dDocent_Contig_14125 157 . C T 30.4794 . AB=0.333333;ABP=4.45795;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=47;DPB=47;DPRA=1.13636;EPP=9.52472;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=103;QR=1411;RO=44;RPL=0;RPP=9.52472;RPPR=98.5551;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=98.5551;SRR=44;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5,0:5:158:0:0:0,-1.50515,-14.5314 0/0:19:18,1:18:585:1:34:0,-2.32066,-49.5584 0/0:17:17,0:17:548:0:0:0,-5.11751,-49.6285 0/1:6:4,2:4:120:2:69:-4.74648,0,-9.29 dDocent_Contig_14126 56 . A G 541.386 . AB=0.385714;ABP=10.9517;AC=3;AF=0.375;AN=8;AO=29;CIGAR=1X;DP=88;DPB=88;DPRA=0;EPP=65.983;EPPR=131.127;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.551724;PAIREDR=0.610169;PAO=0;PQA=0;PQR=0;PRO=0;QA=923;QR=1890;RO=59;RPL=18;RPP=6.67934;RPPR=19.2411;RPR=11;RUN=1;SAF=18;SAP=6.67934;SAR=11;SRF=40;SRP=19.2411;SRR=19;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:18:16,2:16:492:2:38:0,-1.80936,-40.9677 0/1:18:7,11:7:228:11:356:-26.9336,0,-15.4208 0/1:30:23,7:23:757:7:231:-12.0828,0,-59.406 0/1:22:13,9:13:413:9:298:-20.5202,0,-30.8542 dDocent_Contig_14127 22 . C T 254.51 . AB=0.297297;ABP=16.2152;AC=2;AF=0.25;AN=8;AO=11;CIGAR=1X;DP=105;DPB=105;DPRA=0.544118;EPP=26.8965;EPPR=207.129;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.454545;PAIREDR=0.755319;PAO=0;PQA=0;PQR=0;PRO=0;QA=436;QR=3720;RO=94;RPL=0;RPP=26.8965;RPPR=207.129;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=94;SRP=207.129;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:15,6:15:586:6:240:-15.654,0,-46.7532 0/1:16:11,5:11:442:5:196:-13.1949,0,-35.3184 0/0:32:32,0:32:1282:0:0:0,-9.63296,-115.647 0/0:36:36,0:36:1410:0:0:0,-10.8371,-127.149 dDocent_Contig_14129 32 . C T 520.784 . AB=0.454545;ABP=3.40511;AC=5;AF=0.625;AN=8;AO=17;CIGAR=1X;DP=45;DPB=45;DPRA=0;EPP=39.9253;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=688;QR=1100;RO=28;RPL=0;RPP=39.9253;RPPR=63.8115;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:17:16,1:16:646:1:33:0,-1.81837,-55.1753 0/1:22:12,10:12:454:10:410:-30.6379,0,-34.567 1/1:4:0,4:0:0:4:163:-15.0584,-1.20412,0 1/1:2:0,2:0:0:2:82:-7.77968,-0.60206,0 dDocent_Contig_14130 107 . N T 240.832 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=8;CIGAR=1X;DP=8;DPB=8;DPRA=0;EPP=20.3821;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=257;QR=0;RO=0;RPL=0;RPP=20.3821;RPPR=0;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:7:0,7:0:0:7:223:-20.382,-2.10721,0 1/1:1:0,1:0:0:1:34:-3.39891,-0.30103,0 ./.:.:.:.:.:.:.:. dDocent_Contig_14131 124 . G A 649.214 . AB=0.416667;ABP=7.35324;AC=3;AF=0.5;AN=6;AO=30;CIGAR=2X;DP=72;DPB=72;DPRA=0;EPP=68.1545;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1010;QR=1355;RO=41;RPL=0;RPP=68.1545;RPPR=92.0407;RPR=30;RUN=1;SAF=0;SAP=68.1545;SAR=30;SRF=0;SRP=92.0407;SRR=41;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. 0|1:41:20,20:20:663:20:664:-47.9499,0,-47.8581 0|1:21:18,3:18:588:3:103:-3.28839,0,-46.9088 0|1:10:3,7:3:104:7:243:-19.1986,0,-6.69279 dDocent_Contig_14134 146 . G A 82.4965 . AB=0.5;ABP=3.0103;AC=3;AF=0.375;AN=8;AO=5;CIGAR=1X;DP=22;DPB=22;DPRA=0.466667;EPP=13.8677;EPPR=31.7504;GTI=0;LEN=1;MEANALT=1;MQM=23.4;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=173;QR=583;RO=17;RPL=0;RPP=13.8677;RPPR=31.7504;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=39.9253;SRR=17;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:7:7,0:7:241:0:0:0,-2.10721,-22.0264 0/0:8:8,0:8:272:0:0:0,-2.40824,-24.8118 0/1:4:2,2:2:70:2:68:-3.27573,0,-5.44328 1/1:3:0,3:0:0:3:105:-6.36596,-0.90309,0 dDocent_Contig_14135 7 . C T 60.4515 . AB=0.103448;ABP=161.453;AC=1;AF=0.125;AN=8;AO=51;CIGAR=1X;DP=960;DPB=960;DPRA=0;EPP=113.755;EPPR=1955.16;GTI=0;LEN=1;MEANALT=2.25;MQM=56.3922;MQMR=58.9666;NS=4;NUMALT=1;ODDS=2.77556e-17;PAIRED=0.843137;PAIREDR=0.94327;PAO=0;PQA=0;PQR=0;PRO=0;QA=1966;QR=34363;RO=899;RPL=0;RPP=113.755;RPPR=1955.16;RPR=51;RUN=1;SAF=51;SAP=113.755;SAR=0;SRF=899;SRP=1955.16;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:358:334,21:334:12785:21:812:0,-34.4621,-1075.35 0/0:331:319,10:319:12191:10:386:0,-67.9484,-1052.15 0/0:155:146,8:146:5523:8:307:0,-18.7558,-466.614 0/1:116:100,12:100:3864:12:461:-7.74412,0,-309.421 dDocent_Contig_14136 13 . T C 230.31 . AB=0.409091;ABP=4.58955;AC=2;AF=0.25;AN=8;AO=9;CIGAR=2X;DP=39;DPB=39;DPRA=1.29412;EPP=22.5536;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=359;QR=1199;RO=30;RPL=0;RPP=22.5536;RPPR=68.1545;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:20:12,8:12:482:8:323:-23.4184,0,-37.7097 0|0:14:14,0:14:553:0:0:0,-4.21442,-50.1102 0|0:3:3,0:3:123:0:0:0,-0.90309,-11.4648 0|1:2:1,1:1:41:1:36:-2.99621,0,-3.49251 dDocent_Contig_14137 29 . C A 152.295 . AB=0.153846;ABP=16.5402;AC=0;AF=0;AN=8;AO=2;CIGAR=1X3M1X;DP=37;DPB=37;DPRA=2.6;EPP=7.35324;EPPR=61.6401;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.925926;PAO=0;PQA=0;PQR=0;PRO=0;QA=80;QR=1076;RO=27;RPL=0;RPP=7.35324;RPPR=61.6401;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:5:5,0,0:5:202:0,0:0,0:0,-1.50515,-18.5619,-1.50515,-18.5619,-18.5619 0|0:7:5,0,2:5:194:0,2:0,81:-5.57852,-7.08367,-23.0108,0,-16.3269,-15.7248 0|0:13:8,2,3:8:321:2,3:80,122:-7.65896,-3.47967,-29.3232,0,-19.8605,-25.5473 0|0:12:9,0,3:9:359:0,3:0,118:-7.38984,-10.0991,-39.669,0,-29.9642,-29.0611 dDocent_Contig_14138 73 . T C 134.894 . AB=0;ABP=0;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1X;DP=17;DPB=17;DPRA=0.615385;EPP=11.6962;EPPR=31.2394;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.69407e-21;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=144;QR=419;RO=13;RPL=4;RPP=11.6962;RPPR=31.2394;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=13;SRP=31.2394;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 0/0:6:6,0:6:182:0:0:0,-1.80618,-16.677 0/0:7:7,0:7:237:0:0:0,-2.10721,-21.6609 1/1:4:0,4:0:0:4:144:-13.3132,-1.20412,0 dDocent_Contig_14139 70 . C T 100.925 . AB=0.183673;ABP=45.5977;AC=3;AF=0.375;AN=8;AO=9;CIGAR=1X;DP=53;DPB=53;DPRA=4.08333;EPP=22.5536;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=324;QR=1557;RO=44;RPL=9;RPP=22.5536;RPPR=98.5551;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:9,2:9:326:2:74:-3.71455,0,-26.3754 0/1:27:22,5:22:757:5:176:-8.05714,0,-60.3098 0/0:4:4,0:4:148:0:0:0,-1.20412,-13.682 0/1:11:9,2:9:326:2:74:-3.71455,0,-26.3754 dDocent_Contig_14140 173 . T A 46.7197 . AB=0.176471;ABP=18.4661;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=43;DPB=43;DPRA=1.96154;EPP=9.52472;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=120;QR=1541;RO=40;RPL=3;RPP=9.52472;RPPR=89.8692;RPR=0;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=89.8692;SRR=40;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:14,3:14:537:3:120:-6.0698,0,-43.5419 0/0:5:5,0:5:202:0:0:0,-1.50515,-18.5615 0/0:17:17,0:17:671:0:0:0,-5.11751,-60.7194 0/0:4:4,0:4:131:0:0:0,-1.20412,-12.1034 dDocent_Contig_14141 78 . T C 48.7712 . AB=0.5;ABP=3.0103;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=44;DPB=44;DPRA=0.62963;EPP=9.52472;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=8.67362e-19;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=114;QR=1404;RO=41;RPL=3;RPP=9.52472;RPPR=92.0407;RPR=0;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:25:25,0:25:869:0:0:0,-7.52575,-78.5281 0/0:13:12,1:12:399:1:32:0,-0.714077,-33.0313 0/0:2:2,0:2:67:0:0:0,-0.60206,-6.36304 0/1:4:2,2:2:69:2:82:-6.57556,0,-5.34854 dDocent_Contig_14142 7 . C A 74.0523 . AB=0.5;ABP=3.0103;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=66;DPB=66;DPRA=0.3;EPP=9.52472;EPPR=139.813;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=117;QR=2424;RO=63;RPL=0;RPP=9.52472;RPPR=139.813;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=63;SRP=139.813;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:20:20,0:20:775:0:0:0,-6.0206,-70.0782 0/0:28:28,0:28:1090:0:0:0,-8.42884,-98.4036 0/0:12:12,0:12:446:0:0:0,-3.61236,-40.4785 0/1:6:3,3:3:113:3:117:-9.1042,0,-8.73279 dDocent_Contig_14143 9 . T A 618.742 . AB=0.55;ABP=3.87889;AC=3;AF=0.5;AN=6;AO=22;CIGAR=1M1X10M;DP=40;DPB=39.75;DPRA=0;EPP=50.7827;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=795;QR=587;RO=15;RPL=0;RPP=50.7827;RPPR=35.5824;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=15;SRP=35.5824;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. 0|1:12:1,3,8:1:40:3,8:117,291:-29.7586,-20.4348,-22.8308,-6.31264,0,-7.20196 0|1:8:5,0,3:5:195:0,3:0,117:-8.50214,-10.0073,-26.0358,0,-16.4182,-15.5151 0|1:20:9,0,11:9:352:0,11:0,387:-29.1364,-31.8456,-60.8041,0,-29.3315,-26.0202 dDocent_Contig_14144 10 . T G 1435.3 . AB=0.5875;ABP=8.33041;AC=3;AF=0.375;AN=8;AO=47;CIGAR=1X;DP=82;DPB=82;DPRA=13.3333;EPP=105.07;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1911;QR=1371;RO=35;RPL=0;RPP=105.07;RPPR=79.0118;RPR=47;RUN=1;SAF=47;SAP=105.07;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:32:17,15:17:672:15:610:-45.6049,0,-51.172 0/1:44:13,31:13:515:31:1260:-100.419,0,-33.45 0/1:4:3,1:3:112:1:41:-2.89045,0,-9.23867 0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83524 dDocent_Contig_14145 55 . A G 86.7864 . AB=0.307692;ABP=7.18621;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=39;DPB=39;DPRA=1;EPP=11.6962;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.971429;PAO=0;PQA=0;PQR=0;PRO=0;QA=156;QR=1385;RO=35;RPL=2;RPP=3.0103;RPPR=70.5741;RPR=2;RUN=1;SAF=2;SAP=3.0103;SAR=2;SRF=34;SRP=70.5741;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 0/0:15:15,0:15:591:0:0:0,-4.51545,-53.5227 0/1:13:9,4:9:358:4:156:-10.5025,0,-28.6694 0/0:11:11,0:11:436:0:0:0,-3.31133,-39.5943 dDocent_Contig_14146 230 . A G 167.614 . AB=0;ABP=0;AC=2;AF=0.25;AN=8;AO=5;CIGAR=1X;DP=24;DPB=24;DPRA=0.789474;EPP=13.8677;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=179;QR=699;RO=19;RPL=5;RPP=13.8677;RPPR=44.2683;RPR=0;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=44.2683;SRR=19;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:9:9,0:9:331:0:0:0,-2.70927,-30.1407 1/1:5:0,5:0:0:5:179:-16.4602,-1.50515,0 0/0:6:6,0:6:222:0:0:0,-1.80618,-20.3381 0/0:4:4,0:4:146:0:0:0,-1.20412,-13.4977 dDocent_Contig_14147 8 . C T 508.215 . AB=0.222222;ABP=81.4246;AC=3;AF=0.375;AN=8;AO=26;CIGAR=1X;DP=136;DPB=136;DPRA=2.05263;EPP=59.4686;EPPR=241.872;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1004;QR=4178;RO=110;RPL=0;RPP=59.4686;RPPR=241.872;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=110;SRP=241.872;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:53:47,6:47:1793:6:234:-5.47651,0,-145.671 0/1:55:37,18:37:1410:18:694:-46.2372,0,-110.626 0/1:9:7,2:7:267:2:76:-4.5054,0,-21.6836 0/0:19:19,0:19:708:0:0:0,-5.71957,-64.0462 dDocent_Contig_14150 8 . C G 219.883 . AB=0.263158;ABP=21.525;AC=1;AF=0.125;AN=8;AO=10;CIGAR=1X;DP=106;DPB=106;DPRA=1.67647;EPP=24.725;EPPR=211.472;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=383;QR=3689;RO=96;RPL=0;RPP=24.725;RPPR=211.472;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=96;SRP=211.472;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:38:28,10:28:1078:10:383:-23.3863,0,-85.8855 0/0:33:33,0:33:1274:0:0:0,-9.93399,-114.95 0/0:21:21,0:21:793:0:0:0,-6.32163,-71.6907 0/0:14:14,0:14:544:0:0:0,-4.21442,-49.3061 dDocent_Contig_14153 12 . G A 121.499 . AB=0.285714;ABP=8.59409;AC=2;AF=0.25;AN=8;AO=4;CIGAR=1X1M3X;DP=31;DPB=31;DPRA=2;EPP=11.6962;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=52;MQMR=60;NS=4;NUMALT=2;ODDS=1.73472e-18;PAIRED=1;PAIREDR=0.8;PAO=0;PQA=0;PQR=0;PRO=0;QA=145;QR=991;RO=25;RPL=0;RPP=11.6962;RPPR=57.2971;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:11:11,0,0:11:438:0,0:0,0:0,-3.31133,-39.7751,-3.31133,-39.7751,-39.7751 0|1:14:10,0,4:10:391:0,4:0,145:-9.13483,-12.1451,-44.3117,0,-32.5359,-31.3318 0|0:3:3,0,0:3:121:0,0:0,0:0,-0.90309,-11.2802,-0.90309,-11.2802,-11.2802 0|1:3:1,2,0:1:41:2,0:77,0:-6.40574,0,-3.19148,-6.70677,-3.79354,-10.0991 dDocent_Contig_14154 10 . T C 715.933 . AB=0.0535714;ABP=99.951;AC=0;AF=0;AN=8;AO=3;CIGAR=2X;DP=76;DPB=76;DPRA=0;EPP=9.52472;EPPR=100.727;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=118;QR=1783;RO=45;RPL=0;RPP=9.52472;RPPR=100.727;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:18:11,0,7:11:435:0,7:0,278:-19.969,-23.2804,-59.0738,0,-36.1895,-34.0823 0|0:35:27,1,7:27:1063:1,7:40,282:-15.1177,-19.9507,-107.08,0,-84.1361,-85.3242 0|0:21:6,2,13:6:245:2,13:78,513:-40.4042,-35.7999,-55.4176,0,-13.8226,-16.3157 0|0:2:1,0,1:1:40:0,1:0,41:-3.49251,-3.79354,-7.08367,0,-3.69465,-3.39362 dDocent_Contig_14155 129 . G A 100.482 . AB=0.24;ABP=17.6895;AC=2;AF=0.25;AN=8;AO=8;CIGAR=1X;DP=59;DPB=59;DPRA=6.22222;EPP=20.3821;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=286;QR=1927;RO=51;RPL=0;RPP=20.3821;RPPR=113.755;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=113.755;SRR=51;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:16,4:16:601:4:155:-8.30484,0,-48.4027 0/0:31:29,2:29:1099:2:61:0,-3.54026,-93.4222 0/1:5:3,2:3:117:2:70:-5.14107,0,-9.40523 0/0:3:3,0:3:110:0:0:0,-0.90309,-10.2596 dDocent_Contig_14156 7 . C A 84.1214 . AB=0.266667;ABP=10.1038;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=34;DPB=34;DPRA=2.36842;EPP=11.6962;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=155;QR=1152;RO=30;RPL=0;RPP=11.6962;RPPR=68.1545;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:11,4:11:422:4:155:-9.80999,0,-33.8175 0/0:4:4,0:4:149:0:0:0,-1.20412,-13.7728 0/0:9:9,0:9:348:0:0:0,-2.70927,-31.6803 0/0:6:6,0:6:233:0:0:0,-1.80618,-21.3401 dDocent_Contig_14157 18 . C T 33.6028 . AB=0.121212;ABP=44.1367;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=73;DPB=73;DPRA=2.475;EPP=11.6962;EPPR=152.842;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=159;QR=2783;RO=69;RPL=0;RPP=11.6962;RPPR=152.842;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=69;SRP=152.842;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:33:29,4:29:1181:4:159:-4.75796,0,-96.6277 0/0:25:25,0:25:995:0:0:0,-7.52575,-89.8416 0/0:11:11,0:11:448:0:0:0,-3.31133,-40.6758 0/0:4:4,0:4:159:0:0:0,-1.20412,-14.6914 dDocent_Contig_14158 8 . C A 477.904 . AB=0.365385;ABP=11.1951;AC=3;AF=0.375;AN=8;AO=19;CIGAR=2X;DP=52;DPB=52;DPRA=0;EPP=44.2683;EPPR=65.983;GTI=0;LEN=1;MEANALT=1.5;MQM=52.4737;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.526316;PAIREDR=0.724138;PAO=0;PQA=0;PQR=0;PRO=0;QA=737;QR=1109;RO=29;RPL=0;RPP=44.2683;RPPR=65.983;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:16:12,4,0:12:462:4,0:156,0:-9.30501,0,-37.1142,-12.9174,-38.3183,-50.8533 0|1:14:11,3,0:11:421:3,0:117,0:-6.69596,0,-34.0286,-10.0073,-34.9317,-44.5508 0|1:14:3,10,1:3:111:10,1:389,39:-30.4573,0,-6.15354,-29.3516,-7.17191,-38.128 0|0:8:3,2,3:3:115:2,3:75,117:-8.73007,-3.69764,-12.5312,0,-3.51229,-8.54737 dDocent_Contig_14159 8 . C T 519.735 . AB=0.307692;ABP=7.18621;AC=0;AF=0;AN=8;AO=9;CIGAR=1X2M2X2M;DP=82;DPB=82;DPRA=0;EPP=22.5536;EPPR=79.0118;GTI=0;LEN=1;MEANALT=5;MQM=18.5556;MQMR=60;NS=4;NUMALT=4;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=167;QR=1383;RO=35;RPL=0;RPP=22.5536;RPPR=79.0118;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:39:26,5,2,2,0:26:1027:5,2,2,0:93,77,38,0:0,-2.35387,-85.4413,-1.47766,-80.6231,-85.5162,-5.55985,-84.6785,-83.8475,-89.5697,-7.82678,-86.9464,-86.1182,-90.1717,-92.4429 0|0:24:7,0,5,3,9:7:276:0,5,3,9:0,192,57,345:-26.2434,-28.3506,-51.0735,-12.5929,-35.3258,-33.8206,-24.9684,-47.6803,-31.9402,-46.7772,0,-22.7523,-6.9913,-19.3766,-20.043 0|0:13:0,4,0,4,5:0:0:4,0,4,5:74,0,76,204:-21.492,-17.1525,-15.9484,-21.492,-17.1525,-21.492,-16.9716,-12.7003,-16.9716,-15.7674,-4.56453,-0.183681,-4.56453,0,-3.05938 0|0:6:2,0,0,0,3:2:80:0,0,0,3:0,0,0,123:-9.56207,-10.1641,-16.7523,-10.1641,-16.7523,-16.7523,-10.1641,-16.7523,-16.7523,-16.7523,0,-6.59413,-6.59413,-6.59413,-5.69104 dDocent_Contig_14160 103 . N C 98.8971 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=5X2M1X1M1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=106;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. 1|1:3:0,3:0:0:3:106:-9.88916,-0.90309,0 dDocent_Contig_14162 51 . A T 134.9 . AB=0.269231;ABP=15.0369;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=84;DPB=84;DPRA=1.34483;EPP=18.2106;EPPR=170.214;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=252;QR=3017;RO=77;RPL=7;RPP=18.2106;RPPR=170.214;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=77;SRP=170.214;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:48:48,0:48:1880:0:0:0,-14.4494,-169.414 0/1:26:19,7:19:751:7:252:-15.1889,0,-60.0878 0/0:4:4,0:4:145:0:0:0,-1.20412,-13.403 0/0:6:6,0:6:241:0:0:0,-1.80618,-22.0667 dDocent_Contig_14163 72 . G T 40.8649 . AB=0.285714;ABP=5.80219;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1M1I1X;DP=31;DPB=32;DPRA=0.875;EPP=7.35324;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.793103;PAO=0;PQA=0;PQR=0;PRO=0;QA=80;QR=1076;RO=29;RPL=2;RPP=7.35324;RPPR=65.983;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:7:5,2:5:185:2:80:-5.48436,0,-14.9021 0|0:6:6,0:6:230:0:0:0,-1.80618,-21.0656 0|0:11:11,0:11:403:0:0:0,-3.31133,-36.6097 0|0:7:7,0:7:258:0:0:0,-2.10721,-23.5709 dDocent_Contig_14164 45 . C T 56.0035 . AB=0.333333;ABP=5.9056;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1X;DP=17;DPB=17;DPRA=1.2;EPP=11.6962;EPPR=31.2394;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=0.923077;PAO=0;PQA=0;PQR=0;PRO=0;QA=121;QR=478;RO=13;RPL=0;RPP=11.6962;RPPR=31.2394;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=13;SRP=31.2394;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:4:1,3:1:26:3:82:-6.44499,0,-1.39571 0/0:5:5,0:5:186:0:0:0,-1.50515,-17.0954 0/1:8:7,1:7:266:1:39:-1.48832,0,-21.89 ./.:.:.:.:.:.:.:. dDocent_Contig_14165 106 . N A 62.6076 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=6;CIGAR=2X2M2I6M;DP=7;DPB=8.2;DPRA=3;EPP=16.0391;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=13;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=78;QR=0;RO=0;RPL=0;RPP=16.0391;RPPR=0;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:1:0,0:0:0:0:0:0,0,0 .:.:.:.:.:.:.:. 1|1:2:0,2:0:0:2:26:-1.91898,-0.60206,0 1|1:4:0,4:0:0:4:52:-3.73697,-1.20412,0 dDocent_Contig_14166 41 . G T 30.94 . AB=0.25;ABP=7.35324;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=16;DPB=16;DPRA=2;EPP=7.35324;EPPR=33.4109;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=74;QR=554;RO=14;RPL=0;RPP=7.35324;RPPR=33.4109;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=14;SRP=33.4109;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:8:6,2:6:242:2:74:-4.61578,0,-19.7491 0/0:7:7,0:7:272:0:0:0,-2.10721,-24.8464 ./.:.:.:.:.:.:.:. 0/0:1:1,0:1:40:0:0:0,-0.30103,-3.99568 dDocent_Contig_14167 42 . T A 101.214 . AB=0.217391;ABP=18.9659;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=111;DPB=111;DPRA=0.784091;EPP=13.8677;EPPR=233.186;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=0.95283;PAO=0;PQA=0;PQR=0;PRO=0;QA=204;QR=4202;RO=106;RPL=0;RPP=13.8677;RPPR=233.186;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=106;SRP=233.186;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:40:40,0:40:1597:0:0:0,-12.0412,-143.963 0/0:34:34,0:34:1374:0:0:0,-10.235,-123.914 0/1:23:18,5:18:717:5:204:-11.8203,0,-57.9273 0/0:14:14,0:14:514:0:0:0,-4.21442,-46.5807 dDocent_Contig_14168 9 . T G 63.5693 . AB=0.190476;ABP=37.9607;AC=2;AF=0.25;AN=8;AO=8;CIGAR=1X;DP=68;DPB=68;DPRA=1.61538;EPP=20.3821;EPPR=133.299;GTI=0;LEN=1;MEANALT=1;MQM=34;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=262;QR=2287;RO=60;RPL=0;RPP=20.3821;RPPR=133.299;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:19,4:19:714:4:132:-4.3317,0,-57.6618 0/1:19:15,4:15:579:4:130:-5.42249,0,-46.7327 0/0:23:23,0:23:877:0:0:0,-6.92369,-79.2495 0/0:3:3,0:3:117:0:0:0,-0.90309,-10.9104 dDocent_Contig_14169 59 . C T 120.838 . AB=0.272727;ABP=12.8806;AC=2;AF=0.25;AN=8;AO=7;CIGAR=1X;DP=60;DPB=60;DPRA=0.466667;EPP=18.2106;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=58.1321;NS=4;NUMALT=1;ODDS=0;PAIRED=0.571429;PAIREDR=0.698113;PAO=0;PQA=0;PQR=0;PRO=0;QA=276;QR=2067;RO=53;RPL=7;RPP=18.2106;RPPR=118.098;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:25:25,0:25:978:0:0:0,-7.52575,-87.7561 0/1:11:7,4:7:275:4:155:-11.0119,0,-21.806 0/1:11:9,2:9:349:2:82:-4.46835,0,-28.457 0/0:13:12,1:12:465:1:39:0,-0.0168255,-37.1594 dDocent_Contig_14171 7 . C T 8066.75 . AB=0.0531697;ABP=851.035;AC=0;AF=0;AN=8;AO=26;CIGAR=1X5M;DP=489;DPB=489;DPRA=0;EPP=59.4686;EPPR=200.614;GTI=0;LEN=1;MEANALT=8.5;MQM=60;MQMR=59.4725;NS=4;NUMALT=5;ODDS=0;PAIRED=0;PAIREDR=0.450549;PAO=0;PQA=0;PQR=0;PRO=0;QA=989;QR=3504;RO=91;RPL=0;RPP=59.4686;RPPR=200.614;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=91;SRP=200.614;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:173:29,16,0,3,11,91:29:1128:16,0,3,11,91:509,0,108,425,3450:-274.12,-245.726,-333.612,-282.85,-338.429,-375.553,-274.846,-330.425,-367.55,-366.647,-247.941,-303.521,-340.645,-332.642,-337.334,0,-55.5985,-92.7139,-84.7109,-57.8033,-65.3201 0|0:138:29,1,0,5,4,88:29:1110:1,0,5,4,88:39,0,193,151,3337:-264.866,-270.39,-361.181,-273.596,-361.482,-364.688,-257.745,-345.631,-348.836,-347.331,-261.22,-349.105,-352.311,-336.46,-351.107,0,-87.8997,-91.106,-75.2536,-78.7294,-64.6154 0|0:127:25,5,7,7,9,57:25:958:5,7,7,9,57:193,278,265,338,2142:-167.94,-159.882,-234.572,-152.577,-213.189,-226.665,-153.74,-214.351,-207.046,-227.827,-147.776,-208.387,-201.082,-202.245,-221.261,0,-60.6101,-53.304,-54.4675,-48.5039,-59.0345 0|0:51:8,2,3,0,2,36:8:308:2,3,0,2,36:76,107,0,75,1345:-107.147,-103.322,-128.011,-100.836,-119.893,-125.223,-109.556,-128.613,-126.126,-134.846,-103.412,-122.469,-119.983,-128.703,-128.101,0,-19.0639,-16.5813,-25.2972,-19.154,-14.4601 dDocent_Contig_14172 23 . G A 127.676 . AB=0.285714;ABP=11.386;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=80;DPB=80;DPRA=1.0678;EPP=16.0391;EPPR=163.699;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=227;QR=2962;RO=74;RPL=0;RPP=16.0391;RPPR=163.699;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=74;SRP=163.699;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:30:30,0:30:1201:0:0:0,-9.0309,-108.363 0/0:25:25,0:25:997:0:0:0,-7.52575,-90.0282 0/1:21:15,6:15:607:6:227:-14.4665,0,-48.645 0/0:4:4,0:4:157:0:0:0,-1.20412,-14.5088 dDocent_Contig_14173 159 . C T 169.17 . AB=0.209302;ABP=34.5724;AC=2;AF=0.25;AN=8;AO=9;CIGAR=1X;DP=47;DPB=47;DPRA=10.75;EPP=22.5536;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=358;QR=1404;RO=38;RPL=9;RPP=22.5536;RPPR=85.5263;RPR=0;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=85.5263;SRR=38;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:19,2:19:725:2:82:-1.45805,0,-59.2402 0/1:22:15,7:15:536:7:276:-18.5853,0,-41.9274 0/0:3:3,0:3:104:0:0:0,-0.90309,-9.70302 0/0:1:1,0:1:39:0:0:0,-0.30103,-3.89656 dDocent_Contig_14174 16 . T A 227.249 . AB=0.111111;ABP=38.4777;AC=3;AF=0.375;AN=8;AO=3;CIGAR=2X1M1X;DP=48;DPB=48;DPRA=1.125;EPP=9.52472;EPPR=79.0118;GTI=0;LEN=1;MEANALT=2;MQM=22;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=116;QR=1386;RO=35;RPL=0;RPP=9.52472;RPPR=79.0118;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:14:6,6,2:6:239:6,2:237,78:-17.8279,0,-18.0088,-16.3354,-16.5171,-35.4159 0|1:9:6,3,0:6:225:3,0:118,0:-8.29362,0,-17.8971,-10.0998,-18.8002,-28.5131 0|1:13:11,1,1:11:443:1,1:40,38:-0.0740706,0,-36.3797,-1.80639,-35.0267,-38.0205 0|0:12:12,0,0:12:479:0,0:0,0:0,-3.61236,-43.4594,-3.61236,-43.4594,-43.4594 dDocent_Contig_14175 10 . G A 64.973 . AB=0.105769;ABP=143.404;AC=1;AF=0.125;AN=8;AO=22;CIGAR=1X;DP=361;DPB=361;DPRA=0;EPP=50.7827;EPPR=730.454;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=59.1582;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.937313;PAO=0;PQA=0;PQR=0;PRO=0;QA=861;QR=13360;RO=335;RPL=0;RPP=50.7827;RPPR=730.454;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=335;SRP=730.454;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:137:128,5:128:5136:5:199:0,-21.9923,-443.899 0/1:104:93,11:93:3684:11:435:-8.19627,0,-289.368 0/0:73:70,3:70:2768:3:112:0,-11.5292,-236.613 0/0:47:44,3:44:1772:3:115:0,-3.4252,-148.967 dDocent_Contig_14176 9 . T A 77.8158 . AB=0.333333;ABP=5.18177;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X1M2X;DP=24;DPB=24;DPRA=1;EPP=9.52472;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=51;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=119;QR=750;RO=19;RPL=0;RPP=9.52472;RPPR=44.2683;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:9:6,3,0:6:238:3,0:119,0:-8.25759,0,-19.0851,-10.0638,-19.9882,-29.6587 0|0:6:4,0,2:4:158:0,2:0,51:-3.03366,-4.23778,-17.3329,0,-13.3965,-12.7945 0|0:9:9,0,0:9:354:0,0:0,0:0,-2.70927,-32.2221,-2.70927,-32.2221,-32.2221 .:.:.:.:.:.:.:. dDocent_Contig_14177 27 . C G 120.465 . AB=0.3125;ABP=7.89611;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=89;DPB=89;DPRA=0.618182;EPP=16.0391;EPPR=183.243;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=242;QR=3320;RO=83;RPL=0;RPP=16.0391;RPPR=183.243;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=83;SRP=183.243;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:17:17,0:17:680:0:0:0,-5.11751,-61.5295 0/0:38:38,0:38:1509:0:0:0,-11.4391,-136.046 0/1:16:11,5:11:437:5:202:-13.7454,0,-34.8665 0/0:18:17,1:17:694:1:40:0,-1.42286,-58.7919 dDocent_Contig_14178 15 . A G 123.31 . AB=0.26087;ABP=14.4341;AC=2;AF=0.25;AN=8;AO=6;CIGAR=1X;DP=47;DPB=47;DPRA=0.958333;EPP=16.0391;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=243;QR=1632;RO=41;RPL=0;RPP=16.0391;RPPR=92.0407;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:21:21,0:21:847:0:0:0,-6.32163,-76.5409 0/1:17:14,3:14:553:3:120:-6.07018,0,-44.9909 0/1:6:3,3:3:110:3:123:-9.65861,0,-8.45106 0/0:3:3,0:3:122:0:0:0,-0.90309,-11.3725 dDocent_Contig_14179 9 . T A 294.73 . AB=0.241379;ABP=36.7056;AC=2;AF=0.25;AN=8;AO=14;CIGAR=2X;DP=104;DPB=104;DPRA=1.26087;EPP=33.4109;EPPR=189.853;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.944444;PAO=0;PQA=0;PQR=0;PRO=0;QA=551;QR=3476;RO=90;RPL=0;RPP=33.4109;RPPR=198.443;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=89;SRP=189.853;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:19:15,4:15:583:4:159:-8.97276,0,-47.0905 0|1:39:29,10:29:1136:10:392:-23.8982,0,-90.7928 0|0:39:39,0:39:1485:0:0:0,-11.7402,-133.905 0|0:7:7,0:7:272:0:0:0,-2.10721,-24.8468 dDocent_Contig_14181 39 . A G 494.73 . AB=0.351852;ABP=13.3047;AC=2;AF=0.25;AN=8;AO=19;CIGAR=1X;DP=69;DPB=69;DPRA=3.6;EPP=44.2683;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=760;QR=1948;RO=50;RPL=0;RPP=44.2683;RPPR=111.584;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:12,15:12:463:15:596:-45.8489,0,-33.8833 0/1:27:23,4:23:911:4:164:-7.02209,0,-74.1668 0/0:8:8,0:8:296:0:0:0,-2.40824,-26.9832 0/0:7:7,0:7:278:0:0:0,-2.10721,-25.3899 dDocent_Contig_14182 26 . T C 59.2518 . AB=0.16;ABP=28.1125;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=87;DPB=87;DPRA=1.20968;EPP=11.6962;EPPR=183.243;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=164;QR=3301;RO=83;RPL=0;RPP=11.6962;RPPR=183.243;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=83;SRP=183.243;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:24:24,0:24:965:0:0:0,-7.22472,-87.151 0/1:25:21,4:21:836:4:164:-7.62415,0,-68.0274 0/0:21:21,0:21:817:0:0:0,-6.32163,-73.8417 0/0:17:17,0:17:683:0:0:0,-5.11751,-61.8006 dDocent_Contig_14183 9 . T A 122.342 . AB=0.24;ABP=17.6895;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=59;DPB=59;DPRA=2.20588;EPP=16.0391;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.9245;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=231;QR=2007;RO=53;RPL=0;RPP=16.0391;RPPR=118.098;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:19,6:19:715:6:231:-13.6322,0,-57.154 0/0:18:18,0:18:691:0:0:0,-5.41854,-62.5234 0/0:8:8,0:8:289:0:0:0,-2.40824,-26.3523 0/0:8:8,0:8:312:0:0:0,-2.40824,-28.4449 dDocent_Contig_14184 8 . C T 114.706 . AB=0.212121;ABP=26.7649;AC=2;AF=0.25;AN=8;AO=7;CIGAR=1X;DP=52;DPB=52;DPRA=1.73684;EPP=18.2106;EPPR=92.2337;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=57.7333;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.911111;PAO=0;PQA=0;PQR=0;PRO=0;QA=267;QR=1713;RO=45;RPL=0;RPP=18.2106;RPPR=100.727;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=44;SRP=92.2337;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:23,6:23:860:6:228:-12.1543,0,-67.4252 0/0:17:17,0:17:658:0:0:0,-5.11751,-59.5571 0/0:2:2,0:2:78:0:0:0,-0.60206,-7.40347 0/1:4:3,1:3:117:1:39:-2.69244,0,-9.70626 dDocent_Contig_14185 15 . A T 287.194 . AB=0.5;ABP=3.0103;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X1M1X;DP=42;DPB=42;DPRA=0;EPP=7.35324;EPPR=61.6401;GTI=0;LEN=1;MEANALT=2;MQM=40;MQMR=60;NS=4;NUMALT=2;ODDS=3.46945e-18;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=1075;RO=27;RPL=0;RPP=7.35324;RPPR=61.6401;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:4:0,2,2:0:0:2,2:81,82:-11.6695,-5.5466,-4.94454,-6.47079,0,-5.86873 0|0:26:20,0,6:20:795:0,6:0,231:-9.47845,-15.4991,-81.0156,0,-65.8502,-64.0441 0|0:5:1,0,4:1:40:0,4:0,164:-12.8789,-13.1799,-16.4771,0,-3.69465,-2.49053 0|0:7:6,0,1:6:240:0,1:0,41:-1.78036,-3.58654,-23.3657,0,-20.1695,-19.8684 dDocent_Contig_14187 9 . T A 82.3545 . AB=0.294118;ABP=9.26925;AC=2;AF=0.25;AN=8;AO=5;CIGAR=1X;DP=37;DPB=37;DPRA=0.85;EPP=6.91895;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=53.2;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.8;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=170;QR=1214;RO=32;RPL=0;RPP=13.8677;RPPR=72.4974;RPR=5;RUN=1;SAF=4;SAP=6.91895;SAR=1;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:17:17,0:17:638:0:0:0,-5.11751,-57.7524 0/1:7:6,1:6:228:1:30:-0.34756,0,-18.7767 0/0:3:3,0:3:115:0:0:0,-0.90309,-10.7249 0/1:10:6,4:6:233:4:140:-9.93188,0,-18.3298 dDocent_Contig_14188 118 . G T 1002.81 . AB=0.55102;ABP=4.11819;AC=6;AF=0.75;AN=8;AO=35;CIGAR=1X1M;DP=57;DPB=57;DPRA=0;EPP=79.0118;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0.933333;PAO=0;PQA=0;PQR=0;PRO=0;QA=1144;QR=495;RO=15;RPL=0;RPP=79.0118;RPPR=35.5824;RPR=35;RUN=1;SAF=0;SAP=79.0118;SAR=35;SRF=0;SRP=35.5824;SRR=15;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:14:0,5,9:0:0:5,9:177,273:-36.591,-22.155,-20.6498,-14.7718,0,-12.0626 0|1:23:9,2,12:9:293:2,12:70,396:-29.2886,-26.2996,-49.3475,0,-17.9321,-20.0196 0|1:12:6,0,6:6:202:0,6:0,205:-15.1726,-16.9788,-33.3444,0,-16.7046,-14.8985 1|1:8:0,0,8:0:0:0,8:0,270:-24.6265,-24.6265,-24.6265,-2.40824,-2.40824,0 dDocent_Contig_14189 46 . C T 83.8209 . AB=0;ABP=0;AC=2;AF=0.25;AN=8;AO=2;CIGAR=1X;DP=24;DPB=24;DPRA=0.272727;EPP=7.35324;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=873;RO=22;RPL=0;RPP=7.35324;RPPR=50.7827;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:82:-7.77968,-0.60206,0 0/0:11:11,0:11:448:0:0:0,-3.31133,-40.676 0/0:7:7,0:7:266:0:0:0,-2.10721,-24.2942 0/0:4:4,0:4:159:0:0:0,-1.20412,-14.6914 dDocent_Contig_14191 109 . G A 770.764 . AB=0.133333;ABP=20.5268;AC=3;AF=0.375;AN=8;AO=40;CIGAR=1X;DP=68;DPB=68;DPRA=2.5;EPP=89.8692;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=24.7;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1339;QR=946;RO=28;RPL=0;RPP=89.8692;RPPR=63.8115;RPR=40;RUN=1;SAF=0;SAP=89.8692;SAR=40;SRF=0;SRP=63.8115;SRR=28;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:13,2:13:430:2:70:-0.326938,0,-34.5022 0/0:7:6,1:6:205:1:34:0,-0.71136,-17.3894 1/1:38:1,37:1:35:37:1235:-76.7729,-7.94051,0 0/0:8:8,0:8:276:0:0:0,-2.40824,-25.1757 dDocent_Contig_14192 20 . G A 114.326 . AB=0.25;ABP=5.18177;AC=3;AF=0.375;AN=8;AO=6;CIGAR=2X1M9I1M1X1M1X2M;DP=53;DPB=61;DPRA=0;EPP=16.0391;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=229;QR=1775;RO=45;RPL=0;RPP=16.0391;RPPR=100.727;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:39:36,3,0:36:1430:3,0:112,0:0,-1.29554,-118.517,-10.8371,-119.42,-128.587 0|1:4:3,1,0:3:117:1,0:40,0:-2.79156,0,-9.70626,-3.69465,-10.0073,-13.3048 0|0:8:6,0,2:6:228:0,2:0,75:-4.7121,-6.51828,-25.2199,0,-19.0776,-18.4755 1|1:2:0,2,0:0:0:2,0:77,0:-7.30883,-0.60206,0,-7.30883,-0.60206,-7.30883 dDocent_Contig_14193 126 . C T 267.252 . AB=0.283019;ABP=24.6841;AC=2;AF=0.333333;AN=6;AO=15;CIGAR=1X;DP=89;DPB=89;DPRA=0.736111;EPP=35.5824;EPPR=163.699;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=506;QR=2559;RO=74;RPL=0;RPP=35.5824;RPPR=163.699;RPR=15;RUN=1;SAF=0;SAP=35.5824;SAR=15;SRF=0;SRP=163.699;SRR=74;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 0/0:36:36,0:36:1256:0:0:0,-10.8371,-113.342 0/1:37:32,5:32:1096:5:177:-5.13885,0,-87.8048 0/1:16:6,10:6:207:10:329:-25.1092,0,-14.1515 dDocent_Contig_14194 38 . T C 80.9283 . AB=0.178571;ABP=28.1373;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=55;DPB=55;DPRA=2.92857;EPP=16.0391;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=222;QR=1953;RO=49;RPL=0;RPP=16.0391;RPPR=109.412;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:23,5:23:913:5:195:-9.49067,0,-74.0461 0/0:13:12,1:12:481:1:27:0,-1.21361,-40.9411 0/0:5:5,0:5:203:0:0:0,-1.50515,-18.6531 0/0:9:9,0:9:356:0:0:0,-2.70927,-32.3983 dDocent_Contig_14197 19 . G C 157.397 . AB=0.175439;ABP=55.1637;AC=2;AF=0.25;AN=8;AO=11;CIGAR=1X;DP=121;DPB=121;DPRA=2.54762;EPP=26.8965;EPPR=241.872;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.2273;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.981818;PAO=0;PQA=0;PQR=0;PRO=0;QA=436;QR=4418;RO=110;RPL=0;RPP=26.8965;RPPR=241.872;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=110;SRP=241.872;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:32:26,6:26:1044:6:244:-12.7059,0,-83.0657 0/1:25:21,4:21:840:4:151:-6.43179,0,-68.3898 0/0:50:49,1:49:1974:1:41:0,-10.9569,-173.634 0/0:14:14,0:14:560:0:0:0,-4.21442,-50.742 dDocent_Contig_14199 13 . T C 13991.7 . AB=0.0258519;ABP=1664.78;AC=4;AF=0.5;AN=8;AO=22;CIGAR=1X2M1X5M1X1M;DP=851;DPB=849.091;DPRA=0;EPP=50.7827;EPPR=116.082;GTI=0;LEN=1;MEANALT=14;MQM=56.8182;MQMR=60;NS=4;NUMALT=7;ODDS=0;PAIRED=1;PAIREDR=0.946429;PAO=0.25;PQA=10.25;PQR=10.25;PRO=0.25;QA=853;QR=2216;RO=56;RPL=0;RPP=50.7827;RPPR=124.613;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=55;SRP=116.082;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:268:18,5,102,14,47,5,27,28:18:719:5,102,14,47,5,27,28:196,3700,553,1850,204,1075,1113:-372.958,-367.876,-425.596,-92.1532,-140.879,-120.673,-332.946,-381.67,-105.947,-387.956,-226.998,-275.724,0,-240.792,-272.076,-361.545,-410.269,-134.546,-375.338,-269.391,-419.264,-290.941,-339.666,-63.9424,-304.734,-198.787,-333.334,-342.038,-287.199,-335.923,-60.2,-300.992,-195.045,-329.591,-258.988,-337.995 1|0:237:16,1,120,4,37,12,24,13:16:633:1,120,4,37,12,24,13:40,4079,150,1465,468,954,529:-376.403,-377.977,-429.775,-68.4109,-117.266,-84.3839,-368.935,-417.793,-108.225,-419.83,-260.705,-309.564,0,-300.522,-301.667,-342.749,-391.606,-82.0392,-382.564,-274.334,-391.235,-303.212,-352.069,-42.5041,-343.027,-234.797,-316.841,-348.086,-337.662,-386.52,-76.952,-377.478,-269.248,-351.291,-311.754,-385.848 1|0:235:18,12,114,1,51,2,21,0:18:715:12,114,1,51,2,21,0:464,4238,34,2005,80,844,0:-428.848,-405.203,-460.458,-105.97,-135.779,-130.52,-431.513,-461.317,-162.083,-490.079,-269.429,-299.235,0,-325.543,-312.945,-427.676,-457.48,-158.247,-483.789,-321.707,-485.941,-365.137,-394.942,-95.7077,-421.251,-259.167,-417.414,-417.683,-434.267,-464.07,-164.837,-490.38,-328.297,-486.543,-424.005,-493.134 1|0:111:4,3,61,3,21,0,10,0:4:149:3,61,3,21,0,10,0:119,2231,116,834,0,405,0:-228.363,-225.623,-236.916,-56.4275,-64.6864,-50.2598,-220.082,-228.334,-59.1381,-231.375,-160.948,-169.201,0,-163.659,-166.822,-229.567,-237.819,-68.6226,-232.278,-173.144,-241.763,-196.209,-204.462,-35.2631,-198.92,-139.784,-208.405,-205.395,-229.567,-237.819,-68.6226,-232.278,-173.144,-241.763,-208.405,-241.763 dDocent_Contig_14200 35 . C A 407.696 . AB=0.185841;ABP=99.881;AC=1;AF=0.125;AN=8;AO=31;CIGAR=1X;DP=295;DPB=295;DPRA=3.17857;EPP=70.3259;EPPR=576.279;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1218;QR=10552;RO=264;RPL=0;RPP=70.3259;RPPR=576.279;RPR=31;RUN=1;SAF=31;SAP=70.3259;SAR=0;SRF=264;SRP=576.279;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:113:92,21:92:3686:21:843:-42.1676,0,-297.731 0/0:83:78,5:78:3115:5:177:0,-8.71901,-264.157 0/0:71:66,5:66:2608:5:198:0,-3.17666,-216.644 0/0:28:28,0:28:1143:0:0:0,-8.42884,-103.146 dDocent_Contig_14202 10 . A C 421.55 . AB=0.34;ABP=14.1282;AC=3;AF=0.375;AN=8;AO=17;CIGAR=1X;DP=54;DPB=54;DPRA=4.16667;EPP=39.9253;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.470588;PAIREDR=0.783784;PAO=0;PQA=0;PQR=0;PRO=0;QA=678;QR=1492;RO=37;RPL=0;RPP=39.9253;RPPR=83.3548;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:8:7,1:7:283:1:40:-1.58744,0,-23.4348 0/1:34:23,11:23:931:11:436:-29.3592,0,-73.8572 0/1:8:3,5:3:117:5:202:-16.1536,0,-8.50105 0/0:4:4,0:4:161:0:0:0,-1.20412,-14.8749 dDocent_Contig_14203 114 . C A 60.8469 . AB=0.266667;ABP=10.1038;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=49;DPB=49;DPRA=1.32353;EPP=11.6962;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=133;QR=1490;RO=45;RPL=0;RPP=11.6962;RPPR=100.727;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=100.727;SRR=45;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:12:12,0:12:401:0:0:0,-3.61236,-36.4126 0/0:19:19,0:19:614:0:0:0,-5.71957,-55.5646 0/1:15:11,4:11:372:4:133:-7.78352,0,-29.2906 0/0:3:3,0:3:103:0:0:0,-0.90309,-9.60997 dDocent_Contig_14204 140 . T C 230.421 . AB=0.3;ABP=16.9077;AC=2;AF=0.25;AN=8;AO=12;CIGAR=1X;DP=59;DPB=59;DPRA=2.10526;EPP=29.068;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=416;QR=1655;RO=47;RPL=0;RPP=29.068;RPPR=105.07;RPR=12;RUN=1;SAF=0;SAP=29.068;SAR=12;SRF=0;SRP=105.07;SRR=47;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:22,3:22:774:3:95:-1.33816,0,-62.4559 0/1:15:6,9:6:215:9:321:-24.718,0,-15.1836 0/0:9:9,0:9:314:0:0:0,-2.70927,-28.5973 0/0:10:10,0:10:352:0:0:0,-3.0103,-32.0182 dDocent_Contig_14205 1 . N G 771.751 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=21;CIGAR=1X;DP=21;DPB=21;DPRA=0;EPP=48.6112;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=4;NUMALT=1;ODDS=3.38813e-21;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=834;QR=0;RO=0;RPL=0;RPP=48.6112;RPPR=0;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:8:0,8:0:0:8:319:-29.0756,-2.40824,0 1/1:5:0,5:0:0:5:203:-18.6531,-1.50515,0 1/1:7:0,7:0:0:7:271:-24.7492,-2.10721,0 1/1:1:0,1:0:0:1:41:-4.09457,-0.30103,0 dDocent_Contig_14206 28 . T C 228.731 . AB=0.333333;ABP=9.52472;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X;DP=71;DPB=71;DPRA=1.84091;EPP=22.5536;EPPR=137.642;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=0.919355;PAO=0;PQA=0;PQR=0;PRO=0;QA=356;QR=2488;RO=62;RPL=0;RPP=22.5536;RPPR=137.642;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:18,9:18:718:9:356:-24.271,0,-56.8173 0/0:28:28,0:28:1121:0:0:0,-8.42884,-101.174 0/0:7:7,0:7:281:0:0:0,-2.10721,-25.6615 0/0:9:9,0:9:368:0:0:0,-2.70927,-33.4854 dDocent_Contig_14207 53 . T A 414.729 . AB=0.375;ABP=4.09604;AC=1;AF=0.125;AN=8;AO=3;CIGAR=3M1X1M4D3M1X5M2X7M1X;DP=47;DPB=43.1071;DPRA=0;EPP=9.52472;EPPR=55.1256;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=119;QR=845;RO=24;RPL=3;RPP=9.52472;RPPR=55.1256;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:21:12,8,0,0:12:416:8,0,0:307,0,0:-21.5906,0,-31.3725,-25.203,-33.7808,-58.9935,-25.203,-33.7808,-58.9935,-58.9935 0|0:11:6,4,0,0:6:210:4,0,0:140,0,0:-9.79889,0,-16.1128,-11.6051,-17.3169,-28.7201,-11.6051,-17.3169,-28.7201,-28.7201 0|0:7:4,0,0,3:4:145:0,0,3:0,0,111:-8.24671,-9.45083,-21.2858,-9.45083,-21.2858,-21.2858,0,-12.2016,-12.2016,-11.2985 0|1:8:2,1,3,2:2:74:1,3,2:39,119,65:-9.21887,-6.61139,-12.365,0,-2.84901,-5.16026,-4.59784,-7.43706,-0.837632,-10.0415 dDocent_Contig_14208 19 . A G 969.953 . AB=0.300752;ABP=48.8725;AC=4;AF=0.5;AN=8;AO=40;CIGAR=1X;DP=133;DPB=133;DPRA=0;EPP=89.8692;EPPR=202.786;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=0;PAIREDR=0.336957;PAO=0;PQA=0;PQR=0;PRO=0;QA=1590;QR=3648;RO=92;RPL=0;RPP=89.8692;RPPR=202.786;RPR=40;RUN=1;SAF=40;SAP=89.8692;SAR=0;SRF=92;SRP=202.786;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:66:42,24:42:1659:24:953:-66.1982,0,-129.674 0/1:30:24,6:24:966:6:240:-12.9445,0,-78.21 0/1:23:15,8:15:585:8:315:-21.7899,0,-46.0608 0/1:14:11,2:11:438:2:82:-3.45683,0,-35.4537 dDocent_Contig_14209 30 . A G 45.2806 . AB=0.131579;ABP=47.8112;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X1M1X2M;DP=84;DPB=84;DPRA=0.826087;EPP=13.8677;EPPR=125.156;GTI=0;LEN=1;MEANALT=1.5;MQM=29.8;MQMR=31.2344;NS=4;NUMALT=3;ODDS=6.93889e-18;PAIRED=0;PAIREDR=0.328125;PAO=0;PQA=0;PQR=0;PRO=0;QA=172;QR=2449;RO=64;RPL=0;RPP=13.8677;RPPR=141.985;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=62;SRP=125.156;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:30:23,0,1,6:23:906:0,1,6:0,41,108:0,-6.92369,-55.1874,-5.42084,-53.693,-53.3919,-0.613353,-48.8579,-47.3648,-47.0517 0|1:21:17,4,0,0:17:652:4,0,0:132,0,0:-4.77496,0,-33.6105,-9.89247,-34.8146,-44.4149,-9.89247,-34.8146,-44.4149,-44.4149 0|0:16:14,0,2,0:14:511:0,2,0:0,81,0:0,-4.21442,-17.2009,-1.02378,-14.202,-13.5999,-4.21442,-17.2009,-14.202,-17.2009 0|0:17:10,1,0,6:10:380:1,0,6:40,0,106:-3.14274,-4.92283,-27.6836,-6.15304,-27.9847,-29.2078,0,-21.8656,-23.0818,-21.2757 dDocent_Contig_14210 10 . G A 232.706 . AB=0.141667;ABP=136.845;AC=2;AF=0.25;AN=8;AO=17;CIGAR=1X4M;DP=178;DPB=178;DPRA=0.689655;EPP=24.5973;EPPR=113.012;GTI=0;LEN=1;MEANALT=2.33333;MQM=53.3529;MQMR=44.8082;NS=4;NUMALT=4;ODDS=0;PAIRED=0;PAIREDR=0.178082;PAO=0;PQA=0;PQR=0;PRO=0;QA=659;QR=5547;RO=146;RPL=0;RPP=39.9253;RPPR=320.045;RPR=17;RUN=1;SAF=15;SAP=24.5973;SAR=2;SRF=116;SRP=113.012;SRR=30;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:34:30,0,0,4,0:30:1153:0,0,4,0:0,0,153,0:-3.73616,-12.7671,-103.435,-12.7671,-103.435,-103.435,0,-91.0451,-91.0451,-89.8409,-12.7671,-103.435,-103.435,-91.0451,-103.435 0|1:62:50,0,0,10,1:50:1913:0,0,10,1:0,0,384,11:-16.0859,-31.1374,-153.952,-31.1374,-153.952,-153.952,0,-122.996,-122.996,-119.986,-30.7269,-153.522,-153.522,-122.566,-153.221 0|0:58:52,0,3,0,2:52:1981:0,3,0,2:0,114,0,45:0,-15.6536,-159.675,-6.30371,-150.391,-149.488,-15.6536,-159.675,-150.391,-159.675,-12.3944,-156.374,-147.09,-156.374,-155.772 0|0:24:14,3,0,3,4:14:500:3,0,3,4:121,0,122,161:-8.84434,-5.7502,-41.0377,-13.0588,-41.9408,-49.2726,-2.98075,-31.8678,-39.2002,-38.2971,0,-28.8867,-36.2191,-26.1427,-35.015 dDocent_Contig_14211 13 . A T 80.6583 . AB=0.307692;ABP=7.18621;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=44;DPB=44;DPRA=1.93333;EPP=13.8677;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=189;QR=1547;RO=39;RPL=0;RPP=13.8677;RPPR=87.6977;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:10:10,0:10:396:0:0:0,-3.0103,-35.996 0/0:16:15,1:15:583:1:41:0,-0.721913,-48.7084 0/1:13:9,4:9:366:4:148:-9.76456,0,-29.3916 0/0:5:5,0:5:202:0:0:0,-1.50515,-18.5615 dDocent_Contig_14212 94 . A G 40.3028 . AB=0.3;ABP=6.48466;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=33;DPB=33;DPRA=2.8;EPP=11.6962;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.928571;PAO=0;PQA=0;PQR=0;PRO=0;QA=130;QR=938;RO=28;RPL=4;RPP=11.6962;RPPR=63.8115;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:18:16,1:16:535:1:35:0,-1.82881,-45.0943 0/1:10:7,3:7:243:3:95:-5.85408,0,-19.1985 0/0:5:5,0:5:160:0:0:0,-1.50515,-14.7149 ./.:.:.:.:.:.:.:. dDocent_Contig_14213 7 . C T 72.1988 . AB=0.5;ABP=3.0103;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=70;DPB=70;DPRA=0.28125;EPP=9.52472;EPPR=148.499;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=8.67362e-19;PAIRED=0;PAIREDR=0.746269;PAO=0;PQA=0;PQR=0;PRO=0;QA=115;QR=2586;RO=67;RPL=0;RPP=9.52472;RPPR=148.499;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=67;SRP=148.499;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:23:23,0:23:888:0:0:0,-6.92369,-80.2394 0/0:27:27,0:27:1043:0:0:0,-8.12781,-94.1779 0/0:14:14,0:14:538:0:0:0,-4.21442,-48.7643 0/1:6:3,3:3:117:3:115:-8.91885,0,-9.1042 dDocent_Contig_14215 7 . C T 73.2616 . AB=0.15;ABP=45.5712;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=102;DPB=102;DPRA=1.93548;EPP=16.0391;EPPR=211.472;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.989583;PAO=0;PQA=0;PQR=0;PRO=0;QA=230;QR=3684;RO=96;RPL=0;RPP=16.0391;RPPR=211.472;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=96;SRP=211.472;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:36:36,0:36:1368:0:0:0,-10.8371,-123.406 0/1:40:34,6:34:1303:6:230:-9.02513,0,-105.517 0/0:14:14,0:14:545:0:0:0,-4.21442,-49.3963 0/0:12:12,0:12:468:0:0:0,-3.61236,-42.4726 dDocent_Contig_14217 1 . N G 165.492 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=5;CIGAR=1X;DP=5;DPB=5;DPRA=0;EPP=13.8677;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=8.07091;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=180;QR=0;RO=0;RPL=0;RPP=13.8677;RPPR=0;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:5:0,5:0:0:5:180:-16.5491,-1.50515,0 ./.:.:.:.:.:.:.:. dDocent_Contig_14218 22 . C T 180.253 . AB=0.171429;ABP=68.6508;AC=2;AF=0.25;AN=8;AO=12;CIGAR=1X;DP=133;DPB=133;DPRA=1.11111;EPP=29.068;EPPR=265.758;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=464;QR=4841;RO=121;RPL=0;RPP=29.068;RPPR=265.758;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=121;SRP=265.758;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:47:38,9:38:1487:9:342:-16.974,0,-119.915 0/0:40:40,0:40:1629:0:0:0,-12.0412,-146.831 0/0:23:23,0:23:929:0:0:0,-6.92369,-83.9111 0/1:23:20,3:20:796:3:122:-4.4488,0,-65.0301 dDocent_Contig_14219 117 . G A 100.994 . AB=0.166667;ABP=43.5445;AC=4;AF=0.5;AN=8;AO=7;CIGAR=1X1M;DP=70;DPB=70;DPRA=0;EPP=18.2106;EPPR=128.956;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=250;QR=2174;RO=58;RPL=7;RPP=18.2106;RPPR=128.956;RPR=0;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=128.956;SRR=58;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:28:23,4,0:23:865:4,0:155,0:-6.04752,0,-69.9249,-12.9712,-71.129,-83.8659 0|1:30:25,0,5:25:916:0,5:0,177:-7.24509,-14.7708,-89.6259,0,-75.2109,-73.7058 0|1:6:5,0,1:5:199:0,1:0,34:-1.59273,-3.09788,-19.5307,0,-16.7823,-16.4813 0|1:6:5,0,1:5:194:0,1:0,39:-2.09038,-3.59553,-19.5305,0,-16.3243,-16.0232 dDocent_Contig_14221 117 . T C 37.4444 . AB=0.5;ABP=3.0103;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X;DP=37;DPB=37;DPRA=0.363636;EPP=7.35324;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=4.33681e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=70;QR=1205;RO=35;RPL=0;RPP=7.35324;RPPR=79.0118;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=79.0118;SRR=35;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:9:9,0:9:307:0:0:0,-2.70927,-27.9618 0/1:4:2,2:2:69:2:70:-5.44328,0,-5.34854 0/0:12:12,0:12:414:0:0:0,-3.61236,-37.5916 0/0:12:12,0:12:415:0:0:0,-3.61236,-37.6822 dDocent_Contig_14223 7 . C A 1137.96 . AB=0.378151;ABP=18.3566;AC=4;AF=0.5;AN=8;AO=45;CIGAR=1X;DP=119;DPB=119;DPRA=0;EPP=100.727;EPPR=163.699;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.977778;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1729;QR=2845;RO=74;RPL=0;RPP=100.727;RPPR=163.699;RPR=45;RUN=1;SAF=45;SAP=100.727;SAR=0;SRF=74;SRP=163.699;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:48:28,20:28:1076:20:769:-55.0881,0,-82.6955 0/1:38:22,16:22:851:16:614:-44.1594,0,-65.4718 0/1:27:20,7:20:764:7:270:-16.5377,0,-60.9573 0/1:6:4,2:4:154:2:76:-5.40849,0,-12.4274 dDocent_Contig_14224 34 . G C 215.615 . AB=0.25;ABP=24.725;AC=1;AF=0.125;AN=8;AO=10;CIGAR=1X;DP=86;DPB=86;DPRA=2.6087;EPP=24.725;EPPR=168.042;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=385;QR=3001;RO=76;RPL=0;RPP=24.725;RPPR=168.042;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=76;SRP=168.042;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:40:30,10:30:1171:10:385:-22.9594,0,-93.6221 0/0:13:13,0:13:526:0:0:0,-3.91339,-47.6874 0/0:23:23,0:23:922:0:0:0,-6.92369,-83.2865 0/0:10:10,0:10:382:0:0:0,-3.0103,-34.7244 dDocent_Contig_14225 202 . C T 83.9513 . AB=0.147541;ABP=68.8308;AC=3;AF=0.375;AN=8;AO=9;CIGAR=1X;DP=62;DPB=62;DPRA=20.3333;EPP=22.5536;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=329;QR=1912;RO=53;RPL=9;RPP=22.5536;RPPR=118.098;RPR=0;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=118.098;SRR=53;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:32:29,3:29:1055:3:109:-0.535042,0,-85.6305 0/1:24:20,4:20:711:4:148:-6.45725,0,-57.0878 0/1:5:3,2:3:111:2:72:-5.33149,0,-8.84877 0/0:1:1,0:1:35:0:0:0,-0.30103,-3.49863 dDocent_Contig_14226 15 . G A 157.36 . AB=0.304348;ABP=10.6577;AC=2;AF=0.25;AN=8;AO=8;CIGAR=1X;DP=50;DPB=50;DPRA=1.51852;EPP=20.3821;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.875;PAIREDR=0.571429;PAO=0;PQA=0;PQR=0;PRO=0;QA=322;QR=1642;RO=42;RPL=0;RPP=20.3821;RPPR=94.2121;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:10,2:10:392:2:78:-3.79042,0,-32.0195 0/1:11:6,5:6:237:5:203:-15.3417,0,-18.3908 0/0:18:17,1:17:659:1:41:0,-1.32397,-55.5322 0/0:9:9,0:9:354:0:0:0,-2.70927,-32.2172 dDocent_Contig_14227 28 . G C 99.4606 . AB=0.135135;ABP=88.5781;AC=3;AF=0.375;AN=8;AO=11;CIGAR=1X;DP=101;DPB=101;DPRA=0;EPP=26.8965;EPPR=198.443;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=446;QR=3582;RO=90;RPL=0;RPP=26.8965;RPPR=198.443;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=90;SRP=198.443;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:27,4:27:1073:4:161:-5.54297,0,-87.5252 0/0:27:26,1:26:1040:1:41:0,-4.03324,-89.7937 0/1:20:17,3:17:670:3:123:-5.44419,0,-54.6052 0/1:23:20,3:20:799:3:121:-4.3563,0,-65.3026 dDocent_Contig_14228 33 . G A 972.722 . AB=0.605263;ABP=6.66752;AC=4;AF=0.5;AN=8;AO=32;CIGAR=1X;DP=68;DPB=68;DPRA=0.746032;EPP=72.4974;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1234;QR=1418;RO=36;RPL=0;RPP=72.4974;RPPR=81.1833;RPR=32;RUN=1;SAF=32;SAP=72.4974;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:21:21,0:21:833:0:0:0,-6.32163,-75.286 0/1:25:10,15:10:386:15:560:-43.1966,0,-27.5636 0/1:13:5,8:5:199:8:321:-25.3441,0,-14.3747 1/1:9:0,9:0:0:9:353:-32.1294,-2.70927,0 dDocent_Contig_14229 55 . T A 145.105 . AB=0.169492;ABP=58.9901;AC=2;AF=0.25;AN=8;AO=10;CIGAR=1X1M1X;DP=90;DPB=90;DPRA=1.90323;EPP=24.725;EPPR=176.728;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=388;QR=3150;RO=80;RPL=10;RPP=24.725;RPPR=176.728;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=80;SRP=176.728;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:36:29,7:29:1131:7:267:-13.5516,0,-91.2444 0|1:23:20,3:20:804:3:121:-4.3563,0,-65.7555 0|0:13:13,0:13:512:0:0:0,-3.91339,-46.4274 0|0:18:18,0:18:703:0:0:0,-5.41854,-63.5948 dDocent_Contig_14230 10 . A G 1590.11 . AB=0.62069;ABP=14.0174;AC=3;AF=0.375;AN=8;AO=54;CIGAR=1X;DP=93;DPB=93;DPRA=4.83333;EPP=120.27;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2107;QR=1530;RO=39;RPL=0;RPP=120.27;RPPR=87.6977;RPR=54;RUN=1;SAF=54;SAP=120.27;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:5,22:5:195:22:845:-68.229,0,-9.79525 0/1:35:16,19:16:617:19:753:-57.5517,0,-45.3228 0/1:25:12,13:12:477:13:509:-38.6277,0,-35.7558 0/0:6:6,0:6:241:0:0:0,-1.80618,-22.0663 dDocent_Contig_14232 31 . T G 167.578 . AB=0.243902;ABP=26.3669;AC=3;AF=0.375;AN=8;AO=11;CIGAR=1X;DP=56;DPB=56;DPRA=0;EPP=26.8965;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.636364;PAIREDR=0.577778;PAO=0;PQA=0;PQR=0;PRO=0;QA=407;QR=1802;RO=45;RPL=0;RPP=26.8965;RPPR=100.727;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:7,3:7:285:3:118:-7.99242,0,-23.0141 0/1:8:7,1:7:274:1:40:-1.58744,0,-22.6159 0/0:15:14,1:14:561:1:41:0,-0.420883,-46.7363 0/1:23:17,6:17:682:6:208:-12.1229,0,-54.7856 dDocent_Contig_14233 36 . G A 525.457 . AB=0.267857;ABP=55.4358;AC=4;AF=0.5;AN=8;AO=30;CIGAR=1X;DP=112;DPB=112;DPRA=0;EPP=68.1545;EPPR=181.071;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.966667;PAIREDR=0.890244;PAO=0;PQA=0;PQR=0;PRO=0;QA=1008;QR=2742;RO=82;RPL=0;RPP=68.1545;RPPR=181.071;RPR=30;RUN=1;SAF=30;SAP=68.1545;SAR=0;SRF=82;SRP=181.071;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:53:38,15:38:1244:15:501:-29.4519,0,-96.2901 0/1:29:19,10:19:652:10:331:-21.3805,0,-50.2722 0/1:20:16,4:16:545:4:142:-7.10861,0,-43.3506 0/1:10:9,1:9:301:1:34:-0.388611,0,-24.4036 dDocent_Contig_14234 123 . T A 496.931 . AB=0.3625;ABP=16.1477;AC=4;AF=0.5;AN=8;AO=29;CIGAR=1X;DP=80;DPB=80;DPRA=0;EPP=42.621;EPPR=94.907;GTI=0;LEN=1;MEANALT=1.25;MQM=45.3103;MQMR=59.24;NS=4;NUMALT=1;ODDS=0;PAIRED=0.241379;PAIREDR=0.92;PAO=0;PQA=0;PQR=0;PRO=0;QA=1001;QR=1664;RO=50;RPL=0;RPP=65.983;RPPR=111.584;RPR=29;RUN=1;SAF=3;SAP=42.621;SAR=26;SRF=2;SRP=94.907;SRR=48;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:12,11:12:395:11:374:-23.5848,0,-28.9434 0/1:24:15,9:15:486:9:305:-20.2789,0,-36.825 0/1:16:12,3:12:407:3:104:-5.04851,0,-32.3488 0/1:17:11,6:11:376:6:218:-8.17862,0,-27.5005 dDocent_Contig_14235 48 . T A 219.015 . AB=0.318182;ABP=9.32731;AC=5;AF=0.625;AN=8;AO=9;CIGAR=1X;DP=24;DPB=24;DPRA=0;EPP=22.5536;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=358;QR=532;RO=15;RPL=0;RPP=22.5536;RPPR=35.5824;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=15;SRP=35.5824;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:5:4,1:4:142:1:40:-2.49053,0,-11.6216 0/1:10:5,5:5:173:5:197:-15.0952,0,-12.8976 1/1:2:0,2:0:0:2:80:-7.59179,-0.60206,0 0/1:7:6,1:6:217:1:41:-1.98736,0,-17.7729 dDocent_Contig_14236 20 . T C 1054.93 . AB=0.47561;ABP=3.434;AC=4;AF=0.5;AN=8;AO=39;CIGAR=2X;DP=82;DPB=82;DPRA=0;EPP=87.6977;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.953488;PAO=0;PQA=0;PQR=0;PRO=0;QA=1513;QR=1713;RO=43;RPL=0;RPP=87.6977;RPPR=96.3836;RPR=39;RUN=1;SAF=39;SAP=87.6977;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:15:12,3:12:480:3:113:-6.02296,0,-39.0368 0|1:18:3,15:3:120:15:593:-48.2897,0,-5.76915 0|1:25:15,10:15:592:10:391:-28.0193,0,-46.0925 0|1:24:13,11:13:521:11:416:-30.5592,0,-40.0127 dDocent_Contig_14237 7 . C A 94.492 . AB=0.25;ABP=18.2106;AC=2;AF=0.25;AN=8;AO=8;CIGAR=1X;DP=79;DPB=79;DPRA=1.12963;EPP=20.3821;EPPR=157.185;GTI=0;LEN=1;MEANALT=1;MQM=43;MQMR=58.662;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.915493;PAO=0;PQA=0;PQR=0;PRO=0;QA=307;QR=2712;RO=71;RPL=0;RPP=20.3821;RPPR=157.185;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=71;SRP=157.185;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:18:18,0:18:697:0:0:0,-5.41854,-63.0556 0/0:33:32,1:32:1220:1:39:0,-6.05094,-106.122 0/1:17:11,6:11:413:6:229:-11.1441,0,-32.3888 0/1:11:10,1:10:382:1:39:-0.571718,0,-31.4236 dDocent_Contig_14238 146 . G A 68.924 . AB=0.266667;ABP=10.1038;AC=2;AF=0.25;AN=8;AO=4;CIGAR=1X;DP=27;DPB=27;DPRA=1.25;EPP=11.6962;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=156;QR=924;RO=23;RPL=0;RPP=11.6962;RPPR=52.9542;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=52.9542;SRR=23;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:3:3,0:3:122:0:0:0,-0.90309,-11.3725 0/0:9:9,0:9:354:0:0:0,-2.70927,-32.2187 0/1:9:7,2:7:286:2:79:-4.78797,0,-23.4055 0/1:6:4,2:4:162:2:77:-5.50202,0,-13.1606 dDocent_Contig_14239 10 . A G 54.6524 . AB=0.192308;ABP=24.391;AC=3;AF=0.375;AN=8;AO=5;CIGAR=1X;DP=29;DPB=29;DPRA=2.88889;EPP=13.8677;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=188;QR=954;RO=24;RPL=0;RPP=13.8677;RPPR=55.1256;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:8:6,2:6:234:2:65:-3.76521,0,-19.0196 0/1:9:8,1:8:324:1:41:-1.3853,0,-26.819 0/1:9:7,2:7:277:2:82:-5.07041,0,-22.5891 0/0:3:3,0:3:119:0:0:0,-0.90309,-11.0945 dDocent_Contig_14244 112 . T A 417.333 . AB=0.434783;ABP=3.86001;AC=6;AF=0.75;AN=8;AO=16;CIGAR=1X;DP=29;DPB=29;DPRA=0;EPP=37.7539;EPPR=31.2394;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=58.4615;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=0;PAIREDR=0.846154;PAO=0;PQA=0;PQR=0;PRO=0;QA=563;QR=445;RO=13;RPL=0;RPP=37.7539;RPPR=31.2394;RPR=16;RUN=1;SAF=0;SAP=37.7539;SAR=16;SRF=0;SRP=31.2394;SRR=13;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:4:0,4:0:0:4:140:-12.9449,-1.20412,0 1/1:2:0,2:0:0:2:70:-6.6474,-0.60206,0 0/1:11:8,3:8:271:3:106:-6.57783,0,-21.277 0/1:12:5,7:5:174:7:247:-18.9607,0,-12.3896 dDocent_Contig_14246 28 . C T 317.926 . AB=0.4;ABP=5.61607;AC=2;AF=0.25;AN=8;AO=12;CIGAR=1X;DP=67;DPB=67;DPRA=0.810811;EPP=29.068;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.981818;PAO=0;PQA=0;PQR=0;PRO=0;QA=483;QR=2176;RO=55;RPL=0;RPP=29.068;RPPR=122.441;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:13,9:13:514:9:363:-26.4114,0,-39.9821 0/0:33:33,0:33:1315:0:0:0,-9.93399,-118.619 0/0:4:4,0:4:148:0:0:0,-1.20412,-13.6789 0/1:8:5,3:5:199:3:120:-8.77907,0,-15.8803 dDocent_Contig_14247 172 . T A 369.525 . AB=0.326531;ABP=15.8176;AC=3;AF=0.375;AN=8;AO=16;CIGAR=1X;DP=53;DPB=53;DPRA=4.08333;EPP=37.7539;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=622;QR=1491;RO=37;RPL=16;RPP=37.7539;RPPR=83.3548;RPR=0;RUN=1;SAF=0;SAP=37.7539;SAR=16;SRF=0;SRP=83.3548;SRR=37;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:12,4:12:481:4:157:-9.69232,0,-38.824 0/1:28:19,9:19:767:9:347:-23.1603,0,-60.9221 0/0:4:4,0:4:162:0:0:0,-1.20412,-14.967 0/1:5:2,3:2:81:3:118:-9.49774,0,-6.18058 dDocent_Contig_14248 12 . G C 1303.44 . AB=0.0294118;ABP=264.609;AC=0;AF=0;AN=8;AO=4;CIGAR=3M1X2M;DP=180;DPB=179.5;DPRA=0;EPP=11.6962;EPPR=254.901;GTI=0;LEN=1;MEANALT=3.33333;MQM=60;MQMR=60;NS=4;NUMALT=4;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=157;QR=4523;RO=116;RPL=0;RPP=11.6962;RPPR=254.901;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=116;SRP=254.901;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:62:39,1,0,20,1:39:1516:1,0,20,1:39,0,812,35:-55.2721,-63.8068,-188.073,-67.0122,-188.374,-191.58,0,-121.398,-124.604,-118.583,-64.1667,-185.527,-188.733,-121.757,-188.432 0|0:44:29,0,0,14,0:29:1134:0,0,14,0:0,0,555,0:-36.9376,-45.6674,-138.897,-45.6674,-138.897,-138.897,0,-93.2156,-93.2156,-89.0012,-45.6674,-138.897,-138.897,-93.2156,-138.897 0|0:50:30,0,3,16,1:30:1165:0,3,16,1:0,88,637,40:-43.4787,-52.5096,-148.238,-45.5147,-141.233,-140.33,0,-95.7846,-88.7825,-90.9681,-49.2136,-144.942,-137.938,-92.4889,-144.641 0|0:24:18,2,0,2,2:18:708:2,0,2,2:77,0,82,82:-1.35375,-0.458153,-58.0831,-6.77229,-58.6852,-65.0066,0,-51.9157,-58.2372,-57.6351,0,-51.9157,-58.2372,-51.4674,-57.6351 dDocent_Contig_14249 15 . T C 2199.39 . AB=0.707071;ABP=39.8815;AC=5;AF=0.625;AN=8;AO=71;CIGAR=1X;DP=100;DPB=100;DPRA=0;EPP=157.185;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=59.493;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2837;QR=1168;RO=29;RPL=0;RPP=157.185;RPPR=65.983;RPR=71;RUN=1;SAF=71;SAP=157.185;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:43:9,34:9:361:34:1353:-107.546,0,-19.9098 0/1:51:16,35:16:648:35:1402:-111.08,0,-43.3007 0/1:5:4,1:4:159:1:41:-2.58942,0,-13.1857 1/1:1:0,1:0:0:1:41:-4.09457,-0.30103,0 dDocent_Contig_14250 1 . N G 149.132 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=7;CIGAR=1X;DP=7;DPB=7;DPRA=0;EPP=10.7656;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=27.7143;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=0.142857;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=222;QR=0;RO=0;RPL=0;RPP=18.2106;RPPR=0;RPR=7;RUN=1;SAF=1;SAP=10.7656;SAR=6;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1:0,1:0:0:1:35:-1.88936,-0.30103,0 1/1:1:0,1:0:0:1:35:-3.08764,-0.30103,0 1/1:5:0,5:0:0:5:152:-9.45565,-1.50515,0 ./.:.:.:.:.:.:.:. dDocent_Contig_14251 75 . C T 706.287 . AB=0.405405;ABP=8.76177;AC=4;AF=0.5;AN=8;AO=30;CIGAR=1X;DP=74;DPB=74;DPRA=0;EPP=17.1973;EPPR=53.5464;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=0.0666667;PAIREDR=0.681818;PAO=0;PQA=0;PQR=0;PRO=0;QA=1099;QR=1559;RO=44;RPL=30;RPP=68.1545;RPPR=98.5551;RPR=0;RUN=1;SAF=8;SAP=17.1973;SAR=22;SRF=38;SRP=53.5464;SRR=6;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:13,3:13:455:3:113:-5.71954,0,-36.4648 0/1:17:3,14:3:108:14:505:-40.6505,0,-4.95766 0/1:27:18,9:18:628:9:329:-21.8228,0,-48.7098 0/1:14:10,4:10:368:4:152:-9.83354,0,-29.2511 dDocent_Contig_14252 141 . T G 60.3565 . AB=0.214286;ABP=22.8638;AC=3;AF=0.375;AN=8;AO=6;CIGAR=1X;DP=48;DPB=48;DPRA=0.466667;EPP=16.0391;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=205;QR=1409;RO=42;RPL=0;RPP=16.0391;RPPR=94.2121;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=94.2121;SRR=42;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:15,4:15:511:4:135:-6.76373,0,-40.5943 0/1:6:5,1:5:175:1:35:-1.69245,0,-14.2874 0/0:20:20,0:20:654:0:0:0,-6.0206,-59.1688 0/1:3:2,1:2:69:1:35:-2.59554,0,-5.64957 dDocent_Contig_14253 17 . T C 96.2776 . AB=0.125;ABP=61.6401;AC=2;AF=0.25;AN=8;AO=6;CIGAR=1X1M;DP=60;DPB=60;DPRA=4;EPP=16.0391;EPPR=86.2815;GTI=0;LEN=1;MEANALT=2;MQM=40;MQMR=53.3261;NS=4;NUMALT=2;ODDS=0;PAIRED=0.833333;PAIREDR=0.695652;PAO=0;PQA=0;PQR=0;PRO=0;QA=223;QR=1823;RO=46;RPL=0;RPP=16.0391;RPPR=102.898;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=44;SRP=86.2815;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:24:20,0,3:20:782:0,3:0,109:-2.29795,-8.31855,-70.674,0,-62.3287,-61.4256 0|1:24:15,6,3:15:609:6,3:241,114:-10.6761,0,-45.6247,-6.51215,-38.7695,-53.0643 0|0:7:7,0,0:7:277:0,0:0,0:0,-2.10721,-25.1216,-2.10721,-25.1216,-25.1216 0|0:5:4,0,0:4:155:0,0:0,0:0,-1.20412,-10.8477,-1.20412,-10.8477,-10.8477 dDocent_Contig_14254 10 . T C 1860.91 . AB=0.453125;ABP=5.45321;AC=3;AF=0.375;AN=8;AO=58;CIGAR=1M1X1M;DP=128;DPB=117;DPRA=0;EPP=128.956;EPPR=83.3548;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2301;QR=1461;RO=37;RPL=0;RPP=128.956;RPPR=83.3548;RPR=58;RUN=1;SAF=58;SAP=128.956;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:47:15,11,21:15:591:11,21:420,825:-63.3367,-33.3975,-78.7089,0,-14.176,-42.3077 0|1:55:15,11,29:15:591:11,29:419,1150:-90.148,-60.2997,-105.609,0,-14.2669,-39.8995 0|0:16:5,7,4:5:199:7,4:272,162:-20.8363,0,-14.2751,-8.97718,-3.02095,-24.1632 0|1:10:2,4,4:2:80:4,4:156,164:-19.1676,-6.95605,-12.3388,-6.22344,0,-11.6128 dDocent_Contig_14255 88 . G A 132.105 . AB=0.333333;ABP=8.07707;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=48;DPB=48;DPRA=2.33333;EPP=18.2106;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=229;QR=1388;RO=41;RPL=7;RPP=18.2106;RPPR=92.0407;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:14,7:14:476:7:229:-14.6085,0,-36.844 0/0:14:14,0:14:468:0:0:0,-4.21442,-42.4403 0/0:7:7,0:7:242:0:0:0,-2.10721,-22.1176 0/0:6:6,0:6:202:0:0:0,-1.80618,-18.5102 dDocent_Contig_14256 197 . G A 77.1822 . AB=0.166667;ABP=43.5445;AC=3;AF=0.375;AN=8;AO=7;CIGAR=1X;DP=70;DPB=70;DPRA=0.5;EPP=18.2106;EPPR=139.813;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=273;QR=2383;RO=63;RPL=7;RPP=18.2106;RPPR=139.813;RPR=0;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=139.813;SRR=63;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:28:28,0:28:1056:0:0:0,-8.42884,-95.3399 0/1:31:27,4:27:1033:4:156:-5.08536,0,-83.9469 0/1:6:4,2:4:147:2:78:-5.59729,0,-11.7814 0/1:5:4,1:4:147:1:39:-2.39141,0,-12.0837 dDocent_Contig_14259 90 . G A 67.7345 . AB=0.26087;ABP=14.4341;AC=2;AF=0.25;AN=8;AO=6;CIGAR=1X;DP=35;DPB=35;DPRA=1.91667;EPP=16.0391;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=183;QR=942;RO=29;RPL=6;RPP=16.0391;RPPR=65.983;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:11,4:11:365:4:133:-7.78331,0,-28.6563 0/1:8:6,2:6:195:2:50:-2.34045,0,-15.4611 0/0:11:11,0:11:355:0:0:0,-3.31133,-32.2637 0/0:1:1,0:1:27:0:0:0,-0.30103,-2.69978 dDocent_Contig_14260 111 . G T 285.74 . AB=0.227848;ABP=53.8337;AC=3;AF=0.375;AN=8;AO=18;CIGAR=1X2M1X3M1X;DP=93;DPB=93;DPRA=1.88095;EPP=42.0968;EPPR=137.642;GTI=0;LEN=1;MEANALT=3.66667;MQM=53.5556;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=0.306452;PAO=0;PQA=0;PQR=0;PRO=0;QA=598;QR=2054;RO=62;RPL=0;RPP=42.0968;RPPR=137.642;RPR=18;RUN=1;SAF=0;SAP=42.0968;SAR=18;SRF=0;SRP=137.642;SRR=62;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:20:11,4,4,0:11:362:4,4,0:129,137,0:-7.77628,-1.32156,-29.3774,0,-19.5088,-28.0756,-11.0876,-30.5815,-29.2797,-40.3525 0|1:40:23,1,11,3:23:751:1,11,3:34,369,86:-23.0062,-28.1119,-88.472,0,-58.9039,-57.4119,-23.1081,-81.9512,-53.9013,-82.8677 0|1:19:14,0,3,0:14:472:0,3,0:0,92,0:-3.17718,-7.3916,-45.6896,0,-38.3462,-37.4431,-7.3916,-45.6896,-38.3462,-45.6896 0|0:14:14,0,0,0:14:469:0,0,0:0,0,0:0,-4.21442,-42.5314,-4.21442,-42.5314,-42.5314,-4.21442,-42.5314,-42.5314,-42.5314 dDocent_Contig_14261 8 . C T 363.23 . AB=0.181818;ABP=41.702;AC=1;AF=0.125;AN=8;AO=8;CIGAR=3M1X3M;DP=58;DPB=57.7143;DPRA=0;EPP=20.3821;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=309;QR=1380;RO=36;RPL=0;RPP=20.3821;RPPR=81.1833;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:14:6,0,1,7:6:233:0,1,7:0,39,269:-20.2718,-22.078,-41.2254,-18.8714,-38.0192,-37.7182,0,-19.1445,-15.9384,-17.0373 0|0:14:12,2,0,0:12:458:2,0,0:78,0,0:-3.18905,0,-37.3555,-6.80141,-37.9575,-44.3705,-6.80141,-37.9575,-44.3705,-44.3705 0|0:20:11,0,4,5:11:426:0,4,5:0,155,193:-12.5384,-15.8497,-50.8466,-3.11489,-38.1123,-36.9082,0,-34.9964,-22.2622,-33.4912 0|1:10:7,0,3,0:7:263:0,3,0:0,115,0:-7.71459,-9.8218,-31.3626,0,-21.9215,-21.0184,-9.8218,-31.3626,-21.9215,-31.3626 dDocent_Contig_14263 134 . C A 38.6112 . AB=0.2;ABP=14.7363;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=29;DPB=29;DPRA=3.21429;EPP=9.52472;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=108;QR=878;RO=26;RPL=0;RPP=9.52472;RPPR=59.4686;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=59.4686;SRR=26;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:2:2,0:2:61:0:0:0,-0.60206,-5.79353 0/1:15:12,3:12:401:3:108:-5.55972,0,-31.8959 0/0:7:7,0:7:242:0:0:0,-2.10721,-22.1177 0/0:5:5,0:5:174:0:0:0,-1.50515,-16.002 dDocent_Contig_14264 107 . N G 322.396 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=12;CIGAR=1X;DP=12;DPB=12;DPRA=0;EPP=29.068;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=339;QR=0;RO=0;RPL=0;RPP=29.068;RPPR=0;RPR=12;RUN=1;SAF=0;SAP=29.068;SAR=12;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:7:0,7:0:0:7:209:-19.105,-2.10721,0 1/1:1:0,1:0:0:1:27:-2.69978,-0.30103,0 1/1:1:0,1:0:0:1:33:-3.29913,-0.30103,0 1/1:3:0,3:0:0:3:70:-6.53212,-0.90309,0 dDocent_Contig_14265 10 . G A 161.982 . AB=0.275862;ABP=15.6647;AC=3;AF=0.5;AN=6;AO=8;CIGAR=1X;DP=29;DPB=29;DPRA=0;EPP=20.3821;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=323;QR=809;RO=21;RPL=0;RPP=20.3821;RPPR=48.6112;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:8:6,2:6:244:2:81:-5.27749,0,-19.9306 0/1:19:14,5:14:540:5:202:-12.8425,0,-43.2177 0/1:2:1,1:1:25:1:40:-3.39362,0,-1.8978 ./.:.:.:.:.:.:.:. dDocent_Contig_14266 8 . C T 149.06 . AB=0.833333;ABP=8.80089;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=18;DPB=18;DPRA=1.5;EPP=13.8677;EPPR=31.2394;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=195;QR=502;RO=13;RPL=0;RPP=13.8677;RPPR=31.2394;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=13;SRP=31.2394;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:6:1,5:1:37:5:195:-16.118,0,-1.89165 0/0:5:5,0:5:195:0:0:0,-1.50515,-17.9242 0/0:2:2,0:2:78:0:0:0,-0.60206,-7.40347 0/0:5:5,0:5:192:0:0:0,-1.50515,-17.65 dDocent_Contig_14268 1 . N G 71.2068 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=75;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:75:-7.11959,-0.60206,0 dDocent_Contig_14269 153 . C G 135.99 . AB=0.1875;ABP=43.7254;AC=3;AF=0.5;AN=6;AO=9;CIGAR=1X;DP=48;DPB=48;DPRA=0;EPP=22.5536;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=359;QR=1550;RO=39;RPL=0;RPP=22.5536;RPPR=87.6977;RPR=9;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=87.6977;SRR=39;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 0/1:25:22,3:22:867:3:123:-3.93904,0,-70.815 0/1:17:12,5:12:480:5:197:-12.9871,0,-38.4313 0/1:6:5,1:5:203:1:39:-2.09038,0,-16.8467 dDocent_Contig_14270 115 . T C 34.0801 . AB=0.15;ABP=24.2907;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X1M1X;DP=54;DPB=54;DPRA=10;EPP=9.52472;EPPR=98.5551;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=59.9091;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.909091;PAO=0;PQA=0;PQR=0;PRO=0;QA=105;QR=1441;RO=44;RPL=0;RPP=9.52472;RPPR=98.5551;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=98.5551;SRR=44;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:25:20,0,5:20:666:0,5:0,174:-3.06153,-9.08213,-63.0618,0,-54.2304,-52.7253 0|1:20:16,3,1:16:504:3,1:105,35:-3.73049,0,-39.5978,-5.74558,-37.6965,-45.9442 0|0:7:6,0,1:6:202:0,1:0,35:-0.259722,-2.0659,-18.5193,0,-16.7044,-16.4033 0|0:2:2,0,0:2:69:0,0:0,0:0,-0.60206,-6.55266,-0.60206,-6.55266,-6.55266 dDocent_Contig_14271 18 . T C 1317.91 . AB=0.269663;ABP=44.0243;AC=3;AF=0.375;AN=8;AO=24;CIGAR=1X1M1X2M;DP=89;DPB=89;DPRA=0;EPP=55.1256;EPPR=52.9542;GTI=0;LEN=1;MEANALT=2.25;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=955;QR=911;RO=23;RPL=0;RPP=55.1256;RPPR=52.9542;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:39:14,8,0,17:14:551:8,0,17:317,0,679:-50.3685,-28.4893,-71.4055,-54.5829,-73.8138,-99.9065,0,-19.2287,-45.3214,-40.2039 1|0:29:6,7,4,12:6:239:7,4,12:283,153,480:-40.6256,-19.095,-36.6707,-29.8797,-26.2255,-48.3566,-3.65618,0,-10.7874,-19.7252 1|0:14:3,7,0,4:3:121:7,0,4:274,0,163:-25.0919,-3.4772,-11.3425,-25.995,-13.4497,-35.9705,-12.5418,0,-22.5196,-21.3155 1|0:7:0,2,0,5:0:0:2,0,5:81,0,201:-23.1032,-16.4198,-15.8178,-23.1032,-16.4198,-23.1032,-7.08367,0,-7.08367,-5.57852 dDocent_Contig_14272 20 . T G 81.03 . AB=0.266667;ABP=10.1038;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1M1I3M1X;DP=34;DPB=34.8;DPRA=1.57895;EPP=11.6962;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.833333;PAO=0;PQA=0;PQR=0;PRO=0;QA=153;QR=1171;RO=30;RPL=0;RPP=11.6962;RPPR=68.1545;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:15:11,4:11:431:4:153:-9.62586,0,-34.6287 0|0:13:13,0:13:505:0:0:0,-3.91339,-45.7975 0|0:6:6,0:6:235:0:0:0,-1.80618,-21.5218 .:.:.:.:.:.:.:. dDocent_Contig_14274 14 . A G 1121.59 . AB=0.352;ABP=26.7923;AC=4;AF=0.5;AN=8;AO=44;CIGAR=1X3M1X2M1X;DP=125;DPB=125;DPRA=0;EPP=98.5551;EPPR=172.385;GTI=0;LEN=1;MEANALT=1.75;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1734;QR=3077;RO=78;RPL=0;RPP=98.5551;RPPR=172.385;RPR=44;RUN=1;SAF=44;SAP=98.5551;SAR=0;SRF=78;SRP=172.385;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:70:42,27:42:1664:27:1068:-75.2452,0,-128.827 0|1:39:27,11:27:1066:11:432:-27.3941,0,-84.3949 0|1:10:5,4:5:186:4:155:-11.2265,0,-14.0023 0|1:6:4,2:4:161:2:79:-5.69145,0,-13.0693 dDocent_Contig_14275 45 . G A 182.14 . AB=0.135593;ABP=139.114;AC=2;AF=0.25;AN=8;AO=16;CIGAR=1X;DP=255;DPB=255;DPRA=0.861314;EPP=37.7539;EPPR=521.992;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.979079;PAO=0;PQA=0;PQR=0;PRO=0;QA=627;QR=9484;RO=239;RPL=0;RPP=37.7539;RPPR=521.992;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=239;SRP=521.992;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:96:85,11:85:3355:11:444:-11.4151,0,-273.11 0/0:90:90,0:90:3596:0:0:0,-27.0927,-323.659 0/0:47:47,0:47:1872:0:0:0,-14.1484,-168.689 0/1:22:17,5:17:661:5:183:-10.1968,0,-53.1923 dDocent_Contig_14276 176 . T C 42.6164 . AB=0.190476;ABP=20.4855;AC=2;AF=0.25;AN=8;AO=4;CIGAR=1X;DP=36;DPB=36;DPRA=1.4;EPP=11.6962;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=147;QR=1251;RO=32;RPL=4;RPP=11.6962;RPPR=72.4974;RPR=0;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=72.4974;SRR=32;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:13:13,0:13:504:0:0:0,-3.91339,-45.7006 0/1:14:12,2:12:476:2:72:-2.62082,0,-38.9764 0/1:7:5,2:5:196:2:75:-5.01313,0,-15.9071 0/0:2:2,0:2:75:0:0:0,-0.60206,-7.1201 dDocent_Contig_14277 66 . C A 41.5169 . AB=0.181818;ABP=22.3561;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=48;DPB=48;DPRA=1.69231;EPP=11.6962;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=133;QR=1582;RO=44;RPL=4;RPP=11.6962;RPPR=98.5551;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:18,4:18:652:4:133:-5.67375,0,-52.389 0/0:25:25,0:25:896:0:0:0,-7.52575,-80.9568 ./.:.:.:.:.:.:.:. 0/0:1:1,0:1:34:0:0:0,-0.30103,-3.39891 dDocent_Contig_14278 10 . C T 37.4009 . AB=0.1;ABP=128.087;AC=2;AF=0.25;AN=8;AO=9;CIGAR=1X;DP=127;DPB=127;DPRA=2.43243;EPP=22.5536;EPPR=259.244;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.983051;PAO=0;PQA=0;PQR=0;PRO=0;QA=365;QR=4772;RO=118;RPL=0;RPP=22.5536;RPPR=259.244;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=118;SRP=259.244;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:58:53,5:53:2152:5:202:-1.10176,0,-176.385 0/1:32:28,4:28:1135:4:163:-5.42547,0,-92.7972 0/0:19:19,0:19:772:0:0:0,-5.71957,-69.7982 0/0:18:18,0:18:713:0:0:0,-5.41854,-64.4936 dDocent_Contig_14279 21 . T C 74.3092 . 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AB=0.103448;ABP=42.621;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X2M2X1M2X1M1X2M1X2M1I8M;DP=87;DPB=85.4348;DPRA=0;EPP=9.52472;EPPR=44.2683;GTI=0;LEN=1;MEANALT=6;MQM=60;MQMR=60;NS=4;NUMALT=9;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=120;QR=750;RO=19;RPL=0;RPP=9.52472;RPPR=44.2683;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:29:1,3,0,5,3,2,13,0,0,2:1:40:3,0,5,3,2,13,0,0,2:120,0,105,63,42,358,0,0,63:-32.3206,-22.7182,-25.1167,-32.6216,-26.0198,-35.9219,-26.0385,-19.4353,-29.3392,-27.8341,-28.671,-22.0684,-31.9716,-25.3931,-31.0685,-29.9877,-23.3853,-33.2882,-26.7081,-29.3392,-32.6861,-6.61441,0,-9.91934,-3.35396,-5.9771,-7.29039,-6.00595,-32.6216,-26.0198,-35.9219,-29.3392,-31.9716,-33.2882,-9.91934,-35.9219,-32.6216,-26.0198,-35.9219,-29.3392,-31.9716,-33.2882,-9.91934,-35.9219,-35.9219,-27.55,-20.9468,-30.8509,-24.2686,-26.9007,-28.2172,-4.84387,-30.8509,-30.8509,-30.2488 0|0:23:1,0,8,0,0,4,8,0,0,0:1:40:0,8,0,0,4,8,0,0,0:0,217,0,0,81,289,0,0,0:-33.884,-34.185,-37.4858,-18.9343,-22.2373,-19.829,-34.185,-37.4858,-22.2373,-37.4858,-34.185,-37.4858,-22.2373,-37.4858,-37.4858,-29.1964,-32.4973,-17.2698,-32.4973,-32.4973,-31.2931,-11.9655,-15.2721,0,-15.2721,-15.2721,-10.286,-12.8639,-34.185,-37.4858,-22.2373,-37.4858,-37.4858,-32.4973,-15.2721,-37.4858,-34.185,-37.4858,-22.2373,-37.4858,-37.4858,-32.4973,-15.2721,-37.4858,-37.4858,-34.185,-37.4858,-22.2373,-37.4858,-37.4858,-32.4973,-15.2721,-37.4858,-37.4858,-37.4858 0|0:16:6,0,2,0,0,2,2,0,1,1:6:239:0,2,0,0,2,2,0,1,1:0,60,0,0,42,80,0,33,34:-4.4394,-6.24558,-25.9791,-1.98586,-21.728,-21.1259,-6.24558,-25.9791,-21.728,-25.9791,-6.24558,-25.9791,-21.728,-25.9791,-25.9791,-3.62605,-23.3585,-19.1116,-23.3585,-23.3585,-22.7565,0,-19.7538,-15.5021,-19.7538,-19.7538,-17.1348,-19.1517,-6.24558,-25.9791,-21.728,-25.9791,-25.9791,-23.3585,-19.7538,-25.9791,-3.56948,-23.3096,-19.0588,-23.3096,-23.3096,-20.6903,-17.0834,-23.3096,-23.0086,-3.47857,-23.2191,-18.9682,-23.2191,-23.2191,-20.5998,-16.9928,-23.2191,-20.5494,-22.9181 0|0:19:11,0,2,0,0,0,2,2,2,0:11:431:0,2,0,0,0,2,2,2,0:0,72,0,0,0,46,32,69,0:-2.32559,-5.63692,-41.1598,-0.274533,-35.8239,-35.2219,-5.63692,-41.1598,-35.8239,-41.1598,-5.63692,-41.1598,-35.8239,-41.1598,-41.1598,-5.63692,-41.1598,-35.8239,-41.1598,-41.1598,-41.1598,-2.65597,-38.1774,-32.8436,-38.1774,-38.1774,-38.1774,-37.5753,-3.93124,-39.4376,-34.105,-39.4376,-39.4376,-39.4376,-36.4604,-38.8356,0,-35.5526,-30.2166,-35.5526,-35.5526,-35.5526,-32.5721,-33.8334,-34.9506,-5.63692,-41.1598,-35.8239,-41.1598,-41.1598,-41.1598,-38.1774,-39.4376,-35.5526,-41.1598 dDocent_Contig_14281 111 . G A 32.7103 . AB=0.5;ABP=3.0103;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X;DP=40;DPB=40;DPRA=0.333333;EPP=7.35324;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=65;QR=1263;RO=38;RPL=0;RPP=7.35324;RPPR=85.5263;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=85.5263;SRR=38;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:11,0:11:359:0:0:0,-3.31133,-32.6255 0/0:24:24,0:24:808:0:0:0,-7.22472,-73.0291 0/1:4:2,2:2:70:2:65:-4.96891,0,-5.44328 0/0:1:1,0:1:26:0:0:0,-0.30103,-2.59983 dDocent_Contig_14282 163 . G A 108.597 . AB=0.5;ABP=3.0103;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=42;DPB=42;DPRA=0.705882;EPP=11.6962;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=0.947368;PAO=0;PQA=0;PQR=0;PRO=0;QA=162;QR=1547;RO=38;RPL=4;RPP=11.6962;RPPR=85.5263;RPR=0;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=85.5263;SRR=38;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:13:13,0:13:525:0:0:0,-3.91339,-47.5954 0/1:8:4,4:4:164:4:162:-12.5587,0,-12.7417 0/0:13:13,0:13:531:0:0:0,-3.91339,-48.1364 0/0:8:8,0:8:327:0:0:0,-2.40824,-29.8001 dDocent_Contig_14283 34 . C T 275.679 . AB=0.318182;ABP=9.32731;AC=4;AF=0.666667;AN=6;AO=10;CIGAR=1X;DP=25;DPB=25;DPRA=0;EPP=24.725;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.933333;PAO=0;PQA=0;PQR=0;PRO=0;QA=406;QR=604;RO=15;RPL=0;RPP=24.725;RPPR=35.5824;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=15;SRP=35.5824;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:9,2:9:361:2:82:-4.46835,0,-29.5428 1/1:3:0,3:0:0:3:121:-11.28,-0.90309,0 0/1:11:6,5:6:243:5:203:-15.3417,0,-18.9366 ./.:.:.:.:.:.:.:. dDocent_Contig_14284 62 . T C 533.023 . AB=0.527778;ABP=3.25157;AC=2;AF=0.333333;AN=6;AO=19;CIGAR=1X;DP=37;DPB=37;DPRA=18;EPP=44.2683;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=744;QR=722;RO=18;RPL=19;RPP=44.2683;RPPR=42.0968;RPR=0;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:7,15:7:279:15:594:-47.1748,0,-18.8576 0/1:14:10,4:10:403:4:150:-9.64957,0,-32.4151 0/0:1:1,0:1:40:0:0:0,-0.30103,-3.99568 ./.:.:.:.:.:.:.:. dDocent_Contig_14285 85 . T C 53.7801 . AB=0.333333;ABP=5.18177;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=20;DPB=20;DPRA=1.63636;EPP=9.52472;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=103;QR=592;RO=17;RPL=3;RPP=9.52472;RPPR=39.9253;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:6,3:6:207:3:103:-6.9007,0,-16.2588 0/0:8:8,0:8:280:0:0:0,-2.40824,-25.54 0/0:3:3,0:3:105:0:0:0,-0.90309,-9.79616 ./.:.:.:.:.:.:.:. dDocent_Contig_14286 26 . A G 69.6223 . AB=0.0974359;ABP=277.496;AC=2;AF=0.25;AN=8;AO=23;CIGAR=1X;DP=454;DPB=454;DPRA=0.689189;EPP=52.9542;EPPR=938.915;GTI=0;LEN=1;MEANALT=1;MQM=59.2609;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.956522;PAIREDR=0.967517;PAO=0;PQA=0;PQR=0;PRO=0;QA=915;QR=17128;RO=431;RPL=0;RPP=52.9542;RPPR=938.915;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=431;SRP=938.915;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:140:128,12:128:5133:12:475:-0.924015,0,-419.688 0/0:148:148,0:148:5882:0:0:0,-44.5524,-529.184 0/0:111:107,4:107:4243:4:164:0,-18.2644,-366.691 0/1:55:48,7:48:1870:7:276:-8.65218,0,-151.952 dDocent_Contig_14287 47 . A C 520.904 . AB=0.307692;ABP=23.8898;AC=5;AF=0.625;AN=8;AO=21;CIGAR=1X;DP=66;DPB=66;DPRA=0;EPP=48.6112;EPPR=84.1269;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.933333;PAO=0;PQA=0;PQR=0;PRO=0;QA=839;QR=1779;RO=45;RPL=0;RPP=48.6112;RPPR=84.1269;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:32:24,8:24:952:8:321:-19.6234,0,-76.3522 0/1:16:6,10:6:237:10:397:-31.2722,0,-16.8859 0/1:17:15,2:15:590:2:81:-2.56822,0,-48.3184 1/1:1:0,1:0:0:1:40:-3.99568,-0.30103,0 dDocent_Contig_14288 9 . C T 781.681 . AB=0.416667;ABP=7.35324;AC=4;AF=0.5;AN=8;AO=30;CIGAR=1X;DP=72;DPB=72;DPRA=0;EPP=68.1545;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=58.4;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.666667;PAIREDR=0.785714;PAO=0;PQA=0;PQR=0;PRO=0;QA=1157;QR=1595;RO=42;RPL=0;RPP=68.1545;RPPR=94.2121;RPR=30;RUN=1;SAF=30;SAP=68.1545;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:15,10:15:562:10:385:-27.4811,0,-43.3866 0/1:19:13,6:13:502:6:233:-15.5765,0,-39.8086 0/1:16:13,3:13:493:3:117:-6.0939,0,-39.8984 0/1:12:1,11:1:38:11:422:-34.5978,0,-0.184909 dDocent_Contig_14289 12 . T C 138.247 . AB=0.454545;ABP=3.20771;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=100;DPB=100;DPRA=0.370787;EPP=13.8677;EPPR=209.3;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.926316;PAO=0;PQA=0;PQR=0;PRO=0;QA=205;QR=3777;RO=95;RPL=0;RPP=13.8677;RPPR=209.3;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=95;SRP=209.3;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:24:24,0:24:959:0:0:0,-7.22472,-86.6085 0/0:25:25,0:25:984:0:0:0,-7.52575,-88.8593 0/1:11:6,5:6:229:5:205:-15.5237,0,-17.6598 0/0:40:40,0:40:1605:0:0:0,-12.0412,-144.684 dDocent_Contig_14290 28 . T C 454.994 . AB=0.30303;ABP=25.2514;AC=4;AF=0.5;AN=8;AO=20;CIGAR=1X;DP=66;DPB=66;DPRA=0;EPP=46.4397;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=0.891304;PAO=0;PQA=0;PQR=0;PRO=0;QA=792;QR=1846;RO=46;RPL=0;RPP=46.4397;RPPR=102.898;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:14,12:14:558:12:478:-35.5399,0,-42.7327 0/1:10:8,2:8:326:2:72:-3.82402,0,-26.6996 0/1:22:18,4:18:716:4:160:-8.16026,0,-58.1422 0/1:8:6,2:6:246:2:82:-5.37144,0,-20.1119 dDocent_Contig_14292 131 . C G 59.074 . AB=0.277778;ABP=10.7311;AC=2;AF=0.5;AN=4;AO=5;CIGAR=1X3M1X1M1X;DP=18;DPB=18;DPRA=0;EPP=13.8677;EPPR=31.2394;GTI=0;LEN=1;MEANALT=1;MQM=52.8;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=171;QR=445;RO=13;RPL=0;RPP=13.8677;RPPR=31.2394;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=31.2394;SRR=13;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:9:7,2:7:242:2:70:-2.86301,0,-19.4084 .:.:.:.:.:.:.:. 0|1:9:6,3:6:203:3:101:-6.71456,0,-15.8932 .:.:.:.:.:.:.:. dDocent_Contig_14293 18 . T C 591.988 . AB=0.392857;ABP=8.59409;AC=3;AF=0.375;AN=8;AO=23;CIGAR=1X;DP=77;DPB=77;DPRA=0;EPP=52.9542;EPPR=120.27;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.0926;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.944444;PAO=0;PQA=0;PQR=0;PRO=0;QA=933;QR=2158;RO=54;RPL=0;RPP=52.9542;RPPR=120.27;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:21,7:21:828:7:287:-17.7764,0,-66.1444 0/1:22:8,14:8:323:14:564:-44.4794,0,-22.8163 0/0:21:20,1:20:811:1:41:0,-2.22706,-69.0552 0/1:6:5,1:5:196:1:41:-2.28839,0,-16.2077 dDocent_Contig_14294 23 . A T 415.278 . AB=0.2;ABP=53.8228;AC=2;AF=0.25;AN=8;AO=13;CIGAR=2X;DP=75;DPB=75;DPRA=0;EPP=31.2394;EPPR=118.098;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=524;QR=2091;RO=53;RPL=0;RPP=31.2394;RPPR=118.098;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:16:9,5,2:9:352:5,2:200,81:-13.7615,0,-27.4236,-9.79021,-22.2471,-38.1225 0|0:30:23,1,6:23:903:1,6:40,241:-12.9368,-16.5656,-90.5195,0,-70.9596,-72.4488 0|1:19:12,7,0:12:480:7,0:284,0:-20.2144,0,-37.8311,-23.8268,-39.9383,-63.3619 0|0:10:9,0,1:9:356:0,1:0,41:-1.08427,-3.79354,-33.0763,0,-29.6908,-29.3897 dDocent_Contig_14295 21 . T A 200.353 . AB=0.230769;ABP=27.5646;AC=5;AF=0.625;AN=8;AO=10;CIGAR=1M1D1M1X;DP=40;DPB=37.5;DPRA=0;EPP=24.725;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=396;QR=1148;RO=30;RPL=0;RPP=24.725;RPPR=68.1545;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:19:16,3:16:612:3:121:-5.56063,0,-49.6927 0|1:11:9,2:9:354:2:72:-3.52391,0,-28.9105 0|1:9:5,4:5:182:4:163:-12.3492,0,-14.0196 1|1:1:0,1:0:0:1:40:-3.99568,-0.30103,0 dDocent_Contig_14296 13 . G T 703.149 . AB=0.333333;ABP=23.2774;AC=3;AF=0.375;AN=8;AO=30;CIGAR=1M1D2M1X;DP=120;DPB=114;DPRA=0;EPP=68.1545;EPPR=198.443;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.9222;NS=4;NUMALT=1;ODDS=0;PAIRED=0.366667;PAIREDR=0.222222;PAO=0;PQA=0;PQR=0;PRO=0;QA=1191;QR=3518;RO=90;RPL=0;RPP=68.1545;RPPR=198.443;RPR=30;RUN=1;SAF=30;SAP=68.1545;SAR=0;SRF=90;SRP=198.443;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:37:29,8:29:1144:8:321:-18.1198,0,-92.1014 0|0:36:34,2:34:1326:2:81:0,-3.15135,-111.93 0|1:33:15,18:15:583:18:707:-54.0248,0,-42.8771 0|1:14:12,2:12:465:2:82:-3.56526,0,-37.9852 dDocent_Contig_14299 40 . T G 312.328 . AB=0.3125;ABP=17.6677;AC=4;AF=0.5;AN=8;AO=15;CIGAR=1X;DP=48;DPB=48;DPRA=0;EPP=35.5824;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=566;QR=1304;RO=33;RPL=0;RPP=35.5824;RPPR=74.6689;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:14,9:14:544:9:335:-23.5697,0,-42.3743 0/1:6:4,2:4:159:2:81:-5.87955,0,-12.8858 0/1:10:7,3:7:281:3:109:-7.15593,0,-22.6501 0/1:9:8,1:8:320:1:41:-1.3853,0,-26.4582 dDocent_Contig_14301 9 . A G 35.9761 . AB=0.285714;ABP=5.80219;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X;DP=22;DPB=22;DPRA=1.4;EPP=7.35324;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=78;QR=751;RO=20;RPL=0;RPP=7.35324;RPPR=46.4397;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:8:8,0:8:304:0:0:0,-2.40824,-27.7192 0/0:4:4,0:4:156:0:0:0,-1.20412,-14.4173 0/1:7:5,2:5:194:2:78:-5.29626,0,-15.7256 0/0:3:3,0:3:97:0:0:0,-0.90309,-9.04689 dDocent_Contig_14302 4 . T A 66.4848 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X4I2M1X;DP=2;DPB=4;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=70;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. 1|1:2:0,2:0:0:2:70:-6.6474,-0.60206,0 .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. dDocent_Contig_14303 7 . C A 159.981 . AB=0.166667;ABP=66.7068;AC=2;AF=0.25;AN=8;AO=16;CIGAR=1X;DP=152;DPB=152;DPRA=0;EPP=37.7539;EPPR=298.331;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.0662;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.977941;PAO=0;PQA=0;PQR=0;PRO=0;QA=617;QR=5223;RO=136;RPL=0;RPP=37.7539;RPPR=298.331;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=136;SRP=298.331;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:39:36,3:36:1378:3:113:0,-1.20076,-113.764 0/0:47:45,2:45:1730:2:76:0,-6.93374,-148.182 0/1:47:41,6:41:1573:6:234:-7.28269,0,-127.012 0/1:19:14,5:14:542:5:194:-12.1133,0,-43.4032 dDocent_Contig_14305 58 . A T 499.326 . AB=0.414634;ABP=5.60547;AC=5;AF=0.625;AN=8;AO=19;CIGAR=1X;DP=43;DPB=43;DPRA=0;EPP=44.2683;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=735;QR=820;RO=24;RPL=19;RPP=44.2683;RPPR=55.1256;RPR=0;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:13,3:13:471:3:123:-6.64831,0,-37.9063 0/1:22:9,13:9:296:13:494:-38.1746,0,-20.3366 0/1:3:2,1:2:53:1:41:-3.19148,0,-4.13133 1/1:2:0,2:0:0:2:77:-7.3082,-0.60206,0 dDocent_Contig_14306 123 . T C 811.35 . AB=0.66;ABP=14.1282;AC=4;AF=0.5;AN=8;AO=33;CIGAR=1X;DP=50;DPB=50;DPRA=0;EPP=74.6689;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=0.121212;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1136;QR=589;RO=17;RPL=0;RPP=74.6689;RPPR=39.9253;RPR=33;RUN=1;SAF=0;SAP=74.6689;SAR=33;SRF=0;SRP=39.9253;SRR=17;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:7:2,5:2:70:5:171:-13.6192,0,-4.54019 0/1:21:5,16:5:174:16:546:-43.142,0,-9.68032 0/1:10:7,3:7:240:3:105:-6.78586,0,-18.9248 0/1:12:3,9:3:105:9:314:-24.9855,0,-6.1838 dDocent_Contig_14307 10 . T C 84.8702 . AB=0.0491803;ABP=541.429;AC=1;AF=0.125;AN=8;AO=64;CIGAR=1X5M;DP=1462;DPB=1462;DPRA=0;EPP=141.985;EPPR=2517.93;GTI=0;LEN=1;MEANALT=9.5;MQM=59.8906;MQMR=59.9983;NS=4;NUMALT=2;ODDS=2.22045e-16;PAIRED=0.21875;PAIREDR=0.946037;PAO=0;PQA=0;PQR=0;PRO=0;QA=2568;QR=46745;RO=1186;RPL=0;RPP=141.985;RPPR=2578.38;RPR=64;RUN=1;SAF=64;SAP=141.985;SAR=0;SRF=1179;SRP=2517.93;SRR=7;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:533:417,36,34:417:16468:36,34:1424,1369:0,-8.34054,-1352.55,-12.6972,-1250.56,-1357.51 0|0:470:399,21,7:399:15736:21,7:834,282:0,-51.5811,-1339.9,-96.8674,-1322.98,-1389.4 0|1:305:246,26,15:246:9619:26,15:1024,593:-10.186,0,-782.963,-35.4463,-741.997,-821.721 0|0:154:124,10,8:124:4922:10,8:393,324:0,-5.00737,-407.172,-10.61,-383.465,-413.382 dDocent_Contig_14308 23 . A C 314.59 . AB=0.227273;ABP=45.6501;AC=4;AF=0.666666;AN=6;AO=18;CIGAR=1M6I11M1X3M;DP=71;DPB=87.6875;DPRA=0;EPP=42.0968;EPPR=37.7539;GTI=0;LEN=1;MEANALT=4;MQM=59.8889;MQMR=60;NS=3;NUMALT=4;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=438;QR=615;RO=16;RPL=0;RPP=42.0968;RPPR=37.7539;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:57:10,8,12,9,14:10:387:8,12,9,14:198,346,212,333:-24.5238,-12.125,-41.5329,0,-16.4171,-28.2095,-11.168,-27.5814,-15.4609,-40.2749,-1.7868,-18.2051,-6.08391,-17.2497,-29.3916 0|1:9:6,0,2,0,1:6:228:0,2,0,1:0,66,0,29:-3.5561,-5.36228,-24.0999,0,-18.7725,-18.1704,-5.36228,-24.0999,-18.7725,-24.0999,-3.06692,-21.7998,-16.4766,-21.7998,-21.4988 1|1:5:0,0,0,0,3:0:0:0,0,0,3:0,0,0,76:-6.89488,-6.89488,-6.89488,-6.89488,-6.89488,-6.89488,-6.89488,-6.89488,-6.89488,-6.89488,-0.90309,-0.90309,-0.90309,-0.90309,0 .:.:.:.:.:.:.:. dDocent_Contig_14309 9 . A C 236.866 . AB=0.37037;ABP=6.95112;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=35;DPB=35;DPRA=1.6875;EPP=24.725;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=384;QR=947;RO=25;RPL=0;RPP=24.725;RPPR=57.2971;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:8:8,0:8:298:0:0:0,-2.40824,-27.1721 0/1:23:14,9:14:536:9:349:-24.8471,0,-41.6608 0/1:4:3,1:3:113:1:35:-2.29451,0,-9.33485 ./.:.:.:.:.:.:.:. dDocent_Contig_14310 49 . T G 139.478 . AB=0.259259;ABP=16.6021;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=60;DPB=60;DPRA=2.45455;EPP=18.2106;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=257;QR=2092;RO=53;RPL=0;RPP=18.2106;RPPR=118.098;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:20,7:20:783:7:257:-15.3457,0,-62.6638 0/0:6:6,0:6:240:0:0:0,-1.80618,-21.9754 0/0:19:19,0:19:754:0:0:0,-5.71957,-68.183 0/0:8:8,0:8:315:0:0:0,-2.40824,-28.715 dDocent_Contig_14311 193 . T G 382.615 . AB=0.166667;ABP=26.1727;AC=6;AF=0.75;AN=8;AO=13;CIGAR=1X;DP=34;DPB=34;DPRA=0;EPP=31.2394;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=530;QR=778;RO=20;RPL=13;RPP=31.2394;RPPR=46.4397;RPR=0;RUN=1;SAF=0;SAP=31.2394;SAR=13;SRF=0;SRP=46.4397;SRR=20;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:8:0,7:0:0:7:284:-25.5331,-2.10721,0 0/1:16:14,2:14:545:2:82:-2.9632,0,-44.5712 0/1:8:6,2:6:233:2:82:-5.37144,0,-18.9259 1/1:2:0,2:0:0:2:82:-7.77968,-0.60206,0 dDocent_Contig_14312 6 . C T 447.329 . AB=0.319444;ABP=23.398;AC=3;AF=0.375;AN=8;AO=23;CIGAR=1X;DP=93;DPB=93;DPRA=1.14286;EPP=52.9542;EPPR=155.013;GTI=0;LEN=1;MEANALT=1;MQM=52;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=806;QR=2728;RO=70;RPL=0;RPP=52.9542;RPPR=155.013;RPR=23;RUN=1;SAF=0;SAP=52.9542;SAR=23;SRF=70;SRP=155.013;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:18,5:18:702:5:180:-9.62599,0,-56.5903 0/1:29:14,15:14:546:15:523:-37.7798,0,-40.7565 0/1:20:17,3:17:661:3:103:-2.70409,0,-53.8065 0/0:21:21,0:21:819:0:0:0,-6.32163,-74.0347 dDocent_Contig_14313 29 . T C 58.5243 . AB=0.230769;ABP=11.1951;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=139;DPB=139;DPRA=0.759494;EPP=13.8677;EPPR=293.988;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=205;QR=5398;RO=134;RPL=0;RPP=13.8677;RPPR=293.988;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=134;SRP=293.988;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:41:41,0:41:1654:0:0:0,-12.3422,-149.085 0/0:38:38,0:38:1518:0:0:0,-11.4391,-136.858 0/0:47:45,2:45:1824:2:82:0,-6.36873,-156.58 0/1:13:10,3:10:402:3:123:-7.5514,0,-32.6261 dDocent_Contig_14315 191 . C A 106.502 . AB=0.444444;ABP=3.25157;AC=1;AF=0.25;AN=4;AO=4;CIGAR=1X;DP=15;DPB=15;DPRA=1.5;EPP=11.6962;EPPR=26.8965;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=163;QR=424;RO=11;RPL=4;RPP=11.6962;RPPR=26.8965;RPR=0;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=26.8965;SRR=11;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:5,4:5:199:4:163:-12.3492,0,-15.5791 0/0:6:6,0:6:225:0:0:0,-1.80618,-20.6069 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_14316 43 . G A 40.0649 . AB=0.230769;ABP=11.1951;AC=2;AF=0.25;AN=8;AO=3;CIGAR=1X;DP=45;DPB=45;DPRA=0.40625;EPP=9.52472;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=117;QR=1597;RO=41;RPL=0;RPP=9.52472;RPPR=92.0407;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:29:28,0:28:1084:0:0:0,-8.42884,-97.7543 0/1:11:9,2:9:366:2:76:-3.90348,0,-29.9938 0/0:3:3,0:3:106:0:0:0,-0.90309,-9.88729 0/1:2:1,1:1:41:1:41:-3.49251,0,-3.49251 dDocent_Contig_14318 168 . A G 31.5322 . AB=0.222222;ABP=9.04217;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=22;DPB=22;DPRA=1.38462;EPP=7.35324;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=804;RO=20;RPL=2;RPP=7.35324;RPPR=46.4397;RPR=0;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=46.4397;SRR=20;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:11,0:11:450:0:0:0,-3.31133,-40.8558 0/0:2:2,0:2:81:0:0:0,-0.60206,-7.68573 0/1:9:7,2:7:273:2:81:-4.97646,0,-22.2247 ./.:.:.:.:.:.:.:. dDocent_Contig_14319 16 . C A 37.6205 . AB=0.2;ABP=14.7363;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=102;DPB=102;DPRA=0.517241;EPP=9.52472;EPPR=217.986;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.333333;PAIREDR=0.515152;PAO=0;PQA=0;PQR=0;PRO=0;QA=107;QR=3967;RO=99;RPL=0;RPP=9.52472;RPPR=217.986;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=99;SRP=217.986;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:36:36,0:36:1452:0:0:0,-10.8371,-130.923 0/1:15:12,3:12:484:3:107:-5.46095,0,-39.3951 0/0:37:37,0:37:1465:0:0:0,-11.1381,-132.09 0/0:14:14,0:14:566:0:0:0,-4.21442,-51.2817 dDocent_Contig_14320 36 . T C 1052.85 . AB=0.5;ABP=3.0103;AC=5;AF=0.625;AN=8;AO=35;CIGAR=1X;DP=63;DPB=63;DPRA=0;EPP=79.0118;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.542857;PAIREDR=0.928571;PAO=0;PQA=0;PQR=0;PRO=0;QA=1401;QR=1117;RO=28;RPL=0;RPP=79.0118;RPPR=63.8115;RPR=35;RUN=1;SAF=35;SAP=79.0118;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:11,11:11:443:11:448:-34.0533,0,-33.603 0/1:22:11,11:11:437:11:438:-33.1518,0,-33.0627 0/1:12:6,6:6:237:6:235:-17.9073,0,-18.0895 1/1:7:0,7:0:0:7:280:-25.5707,-2.10721,0 dDocent_Contig_14321 50 . G A 151.615 . AB=0.318182;ABP=9.32731;AC=2;AF=0.25;AN=8;AO=7;CIGAR=1X;DP=47;DPB=47;DPRA=0.88;EPP=18.2106;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=271;QR=1589;RO=40;RPL=7;RPP=18.2106;RPPR=89.8692;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:19:19,0:19:761:0:0:0,-5.71957,-68.8115 0/1:17:11,6:11:434:6:231:-16.0351,0,-34.2925 0/1:5:4,1:4:160:1:40:-2.49053,0,-13.2783 0/0:6:6,0:6:234:0:0:0,-1.80618,-21.4299 dDocent_Contig_14322 8 . C T 65.8556 . AB=0.375;ABP=4.09604;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X2M1X;DP=26;DPB=26;DPRA=0.888889;EPP=9.52472;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=116;QR=894;RO=23;RPL=0;RPP=9.52472;RPPR=52.9542;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:8:8,0:8:305:0:0:0,-2.40824,-27.8096 0|0:10:10,0:10:396:0:0:0,-3.0103,-35.9999 0|1:8:5,3:5:193:3:116:-8.40946,0,-15.3331 .:.:.:.:.:.:.:. dDocent_Contig_14323 8 . C T 86.0814 . AB=0.2;ABP=22.5536;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=54;DPB=54;DPRA=2.58621;EPP=13.8677;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=194;QR=1880;RO=49;RPL=0;RPP=13.8677;RPPR=109.412;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:13:13,0:13:490:0:0:0,-3.91339,-44.4417 0/1:25:20,5:20:774:5:194:-10.3071,0,-62.4621 0/0:10:10,0:10:382:0:0:0,-3.0103,-34.7345 0/0:6:6,0:6:234:0:0:0,-1.80618,-21.4311 dDocent_Contig_14325 10 . T A 738.628 . AB=0.473684;ABP=3.35316;AC=4;AF=0.5;AN=8;AO=27;CIGAR=1X;DP=57;DPB=57;DPRA=0;EPP=61.6401;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.7;PAO=0;PQA=0;PQR=0;PRO=0;QA=1077;QR=1182;RO=30;RPL=0;RPP=61.6401;RPPR=68.1545;RPR=27;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:8,13:8:326:13:515:-40.3751,0,-23.3882 0/1:15:11,4:11:434:4:163:-10.543,0,-34.8961 0/1:9:5,4:5:196:4:157:-11.7986,0,-15.303 0/1:12:6,6:6:226:6:242:-18.5441,0,-17.0854 dDocent_Contig_14326 7 . C A 796.032 . AB=0.512821;ABP=3.06598;AC=5;AF=0.625;AN=8;AO=28;CIGAR=1X;DP=47;DPB=47;DPRA=0;EPP=63.8115;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.947368;PAO=0;PQA=0;PQR=0;PRO=0;QA=1059;QR=734;RO=19;RPL=0;RPP=63.8115;RPPR=44.2683;RPR=28;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:8:0,8:0:0:8:305:-27.8099,-2.40824,0 0/1:14:3,11:3:117:11:426:-34.4803,0,-6.69596 0/1:15:9,6:9:351:6:213:-14.9964,0,-27.4364 0/1:10:7,3:7:266:3:115:-7.71459,0,-21.2914 dDocent_Contig_14327 138 . C T 106.544 . AB=0;ABP=0;AC=4;AF=0.5;AN=8;AO=4;CIGAR=1X;DP=29;DPB=29;DPRA=0.472222;EPP=11.6962;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.96;PAO=0;PQA=0;PQR=0;PRO=0;QA=139;QR=825;RO=25;RPL=0;RPP=11.6962;RPPR=57.2971;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=57.2971;SRR=25;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:12:12,0:12:383:0:0:0,-3.61236,-34.7793 0/0:14:13,1:13:442:1:35:0,-0.715791,-36.6072 1/1:2:0,2:0:0:2:69:-6.55266,-0.60206,0 1/1:1:0,1:0:0:1:35:-3.49863,-0.30103,0 dDocent_Contig_14328 12 . A T 383.251 . AB=0.515625;ABP=3.14602;AC=4;AF=0.5;AN=8;AO=33;CIGAR=2X;DP=64;DPB=64;DPRA=0;EPP=74.6689;EPPR=61.9202;GTI=0;LEN=1;MEANALT=1;MQM=21.6364;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.935484;PAO=0;PQA=0;PQR=0;PRO=0;QA=1315;QR=1222;RO=31;RPL=0;RPP=74.6689;RPPR=70.3259;RPR=33;RUN=1;SAF=33;SAP=74.6689;SAR=0;SRF=30;SRP=61.9202;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:15:5,10:5:198:10:404:-14.9074,0,-13.681 0|1:21:14,7:14:551:7:273:-7.68067,0,-43.6077 0|1:15:2,13:2:73:13:522:-20.8232,0,-2.41462 0|1:13:10,3:10:400:3:116:-2.21554,0,-32.4467 dDocent_Contig_14329 186 . A G 308.355 . AB=0.714286;ABP=8.59409;AC=1;AF=0.125;AN=8;AO=10;CIGAR=1X;DP=26;DPB=26;DPRA=3.5;EPP=24.725;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=401;QR=644;RO=16;RPL=10;RPP=24.725;RPPR=37.7539;RPR=0;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=37.7539;SRR=16;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:4,10:4:158:10:401:-32.2331,0,-10.3849 0/0:2:2,0:2:80:0:0:0,-0.60206,-7.59179 0/0:5:5,0:5:203:0:0:0,-1.50515,-18.6531 0/0:5:5,0:5:203:0:0:0,-1.50515,-18.6528 dDocent_Contig_14330 204 . C T 138.085 . AB=0.833333;ABP=8.80089;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=22;DPB=22;DPRA=1.125;EPP=13.8677;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=183;QR=627;RO=17;RPL=5;RPP=13.8677;RPPR=39.9253;RPR=0;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=39.9253;SRR=17;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:6:1,5:1:37:5:183:-15.0206,0,-1.89165 0/0:8:8,0:8:294:0:0:0,-2.40824,-26.8124 0/0:6:6,0:6:222:0:0:0,-1.80618,-20.3381 0/0:2:2,0:2:74:0:0:0,-0.60206,-7.02588 dDocent_Contig_14331 7 . C A 941.746 . AB=0.0485437;ABP=185.351;AC=0;AF=0;AN=8;AO=5;CIGAR=1X1M1X;DP=178;DPB=178;DPRA=1.14444;EPP=13.8677;EPPR=283.13;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.883721;PAO=0;PQA=0;PQR=0;PRO=0;QA=188;QR=4914;RO=129;RPL=0;RPP=13.8677;RPPR=283.13;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=129;SRP=283.13;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:64:41,3,20:41:1561:3,20:111,774:-51.2536,-54.5181,-181.65,0,-118.97,-122.029 0|0:45:42,0,3:42:1600:0,3:0,117:0,-12.6433,-143.88,-2.63597,-134.262,-133.359 0|0:39:32,2,5:32:1220:2,5:77,189:-5.85311,-9.16168,-108.644,0,-93.7555,-98.573 0|0:30:14,0,15:14:533:0,15:0,569:-42.4658,-46.6802,-90.4006,0,-43.7474,-39.232 dDocent_Contig_14332 37 . G C 3354.2 . AB=0.593407;ABP=16.8027;AC=4;AF=0.5;AN=8;AO=108;CIGAR=4M1X3M;DP=182;DPB=182;DPRA=0;EPP=180.669;EPPR=65.7659;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=4;NUMALT=4;ODDS=2.77556e-17;PAIRED=0.833333;PAIREDR=0.825;PAO=0;PQA=0;PQR=0;PRO=0;QA=4309;QR=1549;RO=40;RPL=0;RPP=237.529;RPPR=89.8692;RPR=108;RUN=1;SAF=101;SAP=180.669;SAR=7;SRF=37;SRP=65.7659;SRR=3;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:51:14,6,0,0,31:14:543:6,0,0,31:241,0,0,1206:-94.8679,-79.221,-122.024,-99.0823,-123.83,-143.691,-99.0823,-123.83,-143.691,-143.691,0,-24.7365,-44.5999,-44.5999,-35.268 0|1:67:12,9,0,6,39:12:461:9,0,6,39:359,0,239,1562:-125.068,-99.1143,-134.242,-128.68,-136.951,-166.517,-108.999,-117.27,-146.836,-145.03,0,-8.26508,-37.8338,-18.1512,-26.0937 0|1:39:11,8,0,0,20:11:433:8,0,0,20:320,0,0,812:-63.6613,-40.6146,-73.8223,-66.9726,-76.2305,-102.59,-66.9726,-76.2305,-102.59,-102.59,0,-9.25428,-35.6166,-35.6166,-29.596 0|1:25:3,0,2,1,18:3:112:0,2,1,18:0,79,41,729:-59.2189,-60.122,-69.2881,-53.6218,-62.7875,-62.1854,-56.7376,-65.9036,-59.403,-65.6025,0,-9.16142,-2.65619,-5.77309,-3.74288 dDocent_Contig_14333 156 . A C 144.124 . AB=0.333333;ABP=8.80089;AC=2;AF=0.5;AN=4;AO=8;CIGAR=1X;DP=24;DPB=24;DPRA=0;EPP=20.3821;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=274;QR=554;RO=16;RPL=0;RPP=20.3821;RPPR=37.7539;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=37.7539;SRR=16;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:9,4:9:311:4:134:-8.47777,0,-24.4118 0/1:11:7,4:7:243:4:140:-9.6336,0,-18.8975 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_14334 125 . G A 39.3484 . AB=0.666667;ABP=3.73412;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X;DP=26;DPB=26;DPRA=0.391304;EPP=7.35324;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=47;MQMR=60;NS=4;NUMALT=1;ODDS=4.33681e-19;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=69;QR=828;RO=24;RPL=0;RPP=7.35324;RPPR=55.1256;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=55.1256;SRR=24;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:12:12,0:12:410:0:0:0,-3.61236,-37.2281 0/0:10:10,0:10:348:0:0:0,-3.0103,-31.656 0/0:1:1,0:1:35:0:0:0,-0.30103,-3.49863 0/1:3:1,2:1:35:2:69:-5.60651,0,-2.59554 dDocent_Contig_14335 28 . C T 220.804 . AB=0.184615;ABP=59.1679;AC=2;AF=0.25;AN=8;AO=12;CIGAR=1X;DP=82;DPB=82;DPRA=3.82353;EPP=29.068;EPPR=155.013;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.957143;PAO=0;PQA=0;PQR=0;PRO=0;QA=476;QR=2790;RO=70;RPL=0;RPP=29.068;RPPR=155.013;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=70;SRP=155.013;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:41:31,10:31:1247:10:394:-23.4744,0,-100.16 0/1:24:22,2:22:880:2:82:-0.554958,0,-72.2883 0/0:12:12,0:12:475:0:0:0,-3.61236,-43.0993 0/0:5:5,0:5:188:0:0:0,-1.50515,-17.2787 dDocent_Contig_14336 13 . C T 39.2982 . AB=0.1875;ABP=16.582;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=50;DPB=50;DPRA=1.41176;EPP=9.52472;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=112;QR=1871;RO=47;RPL=0;RPP=9.52472;RPPR=105.07;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:11,0:11:438:0:0:0,-3.31133,-39.7737 0/0:12:12,0:12:489:0:0:0,-3.61236,-44.3613 0/1:16:13,3:13:508:3:112:-5.62874,0,-41.2466 0/0:11:11,0:11:436:0:0:0,-3.31133,-39.5939 dDocent_Contig_14337 70 . T C 458.091 . AB=0.413043;ABP=6.03148;AC=3;AF=0.375;AN=8;AO=19;CIGAR=1X;DP=55;DPB=55;DPRA=1.7037;EPP=28.7251;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.789474;PAIREDR=0.722222;PAO=0;PQA=0;PQR=0;PRO=0;QA=711;QR=1398;RO=36;RPL=19;RPP=44.2683;RPPR=81.1833;RPR=0;RUN=1;SAF=17;SAP=28.7251;SAR=2;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:9:9,0:9:349:0:0:0,-2.70927,-31.7709 0/1:23:15,8:15:580:8:312:-21.5212,0,-45.6192 0/1:11:5,6:5:195:6:210:-15.9245,0,-14.6129 0/1:12:7,5:7:274:5:189:-13.7614,0,-21.4163 dDocent_Contig_14338 7 . C T 147.821 . AB=0.164179;ABP=68.6406;AC=3;AF=0.375;AN=8;AO=13;CIGAR=1X;DP=93;DPB=93;DPRA=0;EPP=31.2394;EPPR=176.728;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.461538;PAIREDR=0.9;PAO=0;PQA=0;PQR=0;PRO=0;QA=495;QR=3069;RO=80;RPL=0;RPP=31.2394;RPPR=176.728;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=80;SRP=176.728;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:21,2:21:809:2:77:-0.385452,0,-66.2124 0/1:38:30,8:30:1138:8:301:-16.0069,0,-91.2814 0/0:26:24,2:24:929:2:78:0,-0.423307,-76.5231 0/1:6:5,1:5:193:1:39:-2.09038,0,-15.9352 dDocent_Contig_14339 21 . A G 1737.87 . AB=0.394286;ABP=19.9974;AC=4;AF=0.5;AN=8;AO=69;CIGAR=1X;DP=175;DPB=175;DPRA=0;EPP=152.842;EPPR=233.186;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=0.768116;PAIREDR=0.783019;PAO=0;PQA=0;PQR=0;PRO=0;QA=2584;QR=3939;RO=106;RPL=0;RPP=152.842;RPPR=233.186;RPR=69;RUN=1;SAF=69;SAP=152.842;SAR=0;SRF=106;SRP=233.186;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:17,13:17:625:13:453:-32.0603,0,-47.5412 0/1:54:42,12:42:1539:12:459:-25.4016,0,-122.525 0/1:49:32,17:32:1222:17:656:-44.626,0,-95.5225 0/1:42:15,27:15:553:27:1016:-79.0967,0,-37.4603 dDocent_Contig_14340 60 . T A 355.253 . AB=0.325581;ABP=14.3727;AC=2;AF=0.25;AN=8;AO=14;CIGAR=1X;DP=84;DPB=84;DPRA=1.04878;EPP=33.4109;EPPR=152.842;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=568;QR=2700;RO=69;RPL=14;RPP=33.4109;RPPR=152.842;RPR=0;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=69;SRP=152.842;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:35:35,0:35:1362:0:0:0,-10.536,-122.83 0/1:30:21,9:21:820:9:365:-24.1836,0,-65.0842 0/1:13:8,5:8:320:5:203:-14.7397,0,-25.2538 0/0:6:5,0:5:198:0:0:0,-1.50515,-17.7904 dDocent_Contig_14341 18 . G A 418.168 . AB=0.402778;ABP=8.92153;AC=4;AF=0.5;AN=8;AO=29;CIGAR=1X1M1X;DP=72;DPB=72;DPRA=0;EPP=65.983;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1.25;MQM=29.7586;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.137931;PAIREDR=0.880952;PAO=0;PQA=0;PQR=0;PRO=0;QA=1141;QR=1607;RO=42;RPL=0;RPP=65.983;RPPR=94.2121;RPR=29;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:19:10,9:10:389:9:358:-15.0951,0,-29.6477 0|1:23:13,10:13:500:10:382:-14.8469,0,-38.4189 0|1:10:6,4:6:230:4:160:-10.2876,0,-18.0561 0|1:20:13,6:13:488:6:241:-8.98524,0,-38.1686 dDocent_Contig_14342 98 . N A 122.991 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=4;CIGAR=2X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=7.37776;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=133;QR=0;RO=0;RPL=4;RPP=11.6962;RPPR=0;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:4:0,4:0:0:4:133:-12.2988,-1.20412,0 .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. dDocent_Contig_14343 143 . T A 186.215 . AB=0.27027;ABP=19.9713;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=56;DPB=56;DPRA=0.973684;EPP=24.725;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=362;QR=1833;RO=46;RPL=0;RPP=24.725;RPPR=102.898;RPR=10;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=102.898;SRR=46;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:19:19,0:19:763:0:0:0,-5.71957,-68.9906 0/1:26:22,4:22:889:4:154:-6.40354,0,-72.4897 0/1:11:5,6:5:181:6:208:-15.7409,0,-13.3217 ./.:.:.:.:.:.:.:. dDocent_Contig_14344 27 . G A 477.176 . AB=0.075;ABP=65.7659;AC=0;AF=0;AN=8;AO=4;CIGAR=2X;DP=97;DPB=97;DPRA=12.8571;EPP=11.6962;EPPR=163.699;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=140;QR=2927;RO=74;RPL=0;RPP=11.6962;RPPR=163.699;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=74;SRP=163.699;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:40:20,3,17:20:800:3,17:112,670:-49.1151,-45.9703,-110.967,0,-56.7544,-60.8019 0|0:50:47,1,0:47:1844:1,0:28,0:0,-11.9695,-163.288,-14.1484,-163.589,-165.806 0|0:3:3,0,0:3:122:0,0:0,0:0,-0.90309,-11.3725,-0.90309,-11.3725,-11.3725 0|0:4:4,0,0:4:161:0,0:0,0:0,-1.20412,-14.8753,-1.20412,-14.8753,-14.8753 dDocent_Contig_14345 13 . C A 44.2475 . AB=0.107692;ABP=89.9026;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=171;DPB=171;DPRA=1.83962;EPP=18.2106;EPPR=359.132;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=278;QR=6524;RO=164;RPL=0;RPP=18.2106;RPPR=359.132;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=164;SRP=359.132;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:65:58,7:58:2306:7:278:-5.82267,0,-188.124 0/0:58:58,0:58:2298:0:0:0,-17.4597,-206.974 0/0:30:30,0:30:1190:0:0:0,-9.0309,-107.376 0/0:18:18,0:18:730:0:0:0,-5.41854,-66.0238 dDocent_Contig_14346 24 . G A 155.499 . AB=0.195652;ABP=40.0197;AC=2;AF=0.25;AN=8;AO=9;CIGAR=1X;DP=112;DPB=112;DPRA=0.69697;EPP=22.5536;EPPR=226.672;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.990291;PAO=0;PQA=0;PQR=0;PRO=0;QA=356;QR=4038;RO=103;RPL=0;RPP=22.5536;RPPR=226.672;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=103;SRP=226.672;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:29:29,0:29:1109:0:0:0,-8.72987,-100.082 0/0:37:37,0:37:1464:0:0:0,-11.1381,-132.008 0/1:31:25,6:25:984:6:239:-12.5531,0,-79.5251 0/1:15:12,3:12:481:3:117:-6.39476,0,-39.1249 dDocent_Contig_14347 18 . C T 110.535 . AB=0.166667;ABP=49.335;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=72;DPB=72;DPRA=6;EPP=20.3821;EPPR=141.985;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=295;QR=2512;RO=64;RPL=0;RPP=20.3821;RPPR=141.985;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=64;SRP=141.985;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:48:40,8:40:1566:8:295:-12.451,0,-126.726 0/0:19:19,0:19:747:0:0:0,-5.71957,-67.5496 0/0:3:3,0:3:118:0:0:0,-0.90309,-11.0016 0/0:2:2,0:2:81:0:0:0,-0.60206,-7.68573 dDocent_Contig_14348 12 . T A 64.5095 . AB=0.363636;ABP=4.78696;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X2M1X;DP=54;DPB=54;DPRA=1.16;EPP=13.8677;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=53;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.673469;PAO=0;PQA=0;PQR=0;PRO=0;QA=156;QR=1932;RO=49;RPL=0;RPP=13.8677;RPPR=109.412;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:3:3,0:3:120:0:0:0,-0.90309,-11.1877 0|0:22:22,0:22:857:0:0:0,-6.62266,-77.4431 0|0:18:17,1:17:686:1:32:0,-2.23205,-58.8839 0|1:11:7,4:7:269:4:124:-8.14978,0,-21.2618 dDocent_Contig_14349 11 . A T 117.561 . AB=0.206897;ABP=24.6501;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=70;DPB=70;DPRA=2.12195;EPP=16.0391;EPPR=141.985;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.859375;PAO=0;PQA=0;PQR=0;PRO=0;QA=239;QR=2550;RO=64;RPL=0;RPP=16.0391;RPPR=141.985;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=64;SRP=141.985;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:23,6:23:929:6:239:-13.154,0,-75.1827 0/0:28:28,0:28:1121:0:0:0,-8.42884,-101.171 0/0:8:8,0:8:315:0:0:0,-2.40824,-28.7139 0/0:5:5,0:5:185:0:0:0,-1.50515,-17.0042 dDocent_Contig_14350 139 . A T 272.766 . AB=0.285714;ABP=22.5536;AC=3;AF=0.375;AN=8;AO=15;CIGAR=1X;DP=66;DPB=66;DPRA=0;EPP=35.5824;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.960784;PAO=0;PQA=0;PQR=0;PRO=0;QA=554;QR=1950;RO=51;RPL=0;RPP=35.5824;RPPR=113.755;RPR=15;RUN=1;SAF=0;SAP=35.5824;SAR=15;SRF=0;SRP=113.755;SRR=51;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:8,4:8:310:4:146:-9.88405,0,-24.6505 0/1:10:7,3:7:243:3:112:-7.43619,0,-19.1861 0/0:17:16,1:16:607:1:39:0,-1.22095,-51.0661 0/1:27:20,7:20:790:7:257:-15.3543,0,-63.2939 dDocent_Contig_14351 7 . C T 855.781 . AB=0.44;ABP=3.79203;AC=4;AF=0.5;AN=8;AO=11;CIGAR=1X2M1X3M1X2M1X;DP=59;DPB=59.8182;DPRA=0;EPP=26.8965;EPPR=48.6112;GTI=0;LEN=1;MEANALT=3.5;MQM=60;MQMR=60;NS=4;NUMALT=5;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=434;QR=821;RO=21;RPL=0;RPP=26.8965;RPPR=48.6112;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:15:0,1,0,3,10,0:0:0:1,0,3,10,0:40,0,118,395,0:-42.2159,-38.9204,-38.6193,-42.2159,-38.9204,-42.2159,-32.5092,-29.2136,-32.5092,-31.6061,-9.70912,-6.412,-9.70912,0,-6.69882,-42.2159,-38.9204,-42.2159,-32.5092,-9.70912,-42.2159 0|0:12:7,0,0,0,0,4:7:276:0,0,0,0,4:0,0,0,0,150:-10.2305,-12.3377,-35.065,-12.3377,-35.065,-35.065,-12.3377,-35.065,-35.065,-35.065,-12.3377,-35.065,-35.065,-35.065,-35.065,0,-22.7821,-22.7821,-22.7821,-22.7821,-21.578 0|1:22:7,13,2,0,0,0:7:271:13,2,0,0,0:501,16,0,0,0:-38.5001,0,-18.6061,-40.29,-22.2329,-61.9512,-40.6073,-22.5195,-62.5533,-62.8841,-40.6073,-22.5195,-62.5533,-62.8841,-62.8841,-40.6073,-22.5195,-62.5533,-62.8841,-62.8841,-62.8841 0|1:10:7,1,0,0,1,0:7:274:1,0,0,1,0:40,0,0,39,0:-1.19299,0,-22.2342,-3.3002,-22.5352,-25.8313,-3.3002,-22.5352,-25.8313,-25.8313,-0.094159,-19.3293,-22.6255,-22.6255,-22.3245,-3.3002,-22.5352,-25.8313,-25.8313,-22.6255,-25.8313 dDocent_Contig_14354 7 . C T 415.039 . AB=0.139394;ABP=189.375;AC=2;AF=0.25;AN=8;AO=23;CIGAR=1X4M;DP=180;DPB=180;DPRA=0;EPP=52.9542;EPPR=267.93;GTI=0;LEN=1;MEANALT=3.33333;MQM=60;MQMR=58.5164;NS=4;NUMALT=4;ODDS=0;PAIRED=0.0434783;PAIREDR=0.459016;PAO=0;PQA=0;PQR=0;PRO=0;QA=889;QR=4667;RO=122;RPL=0;RPP=52.9542;RPPR=267.93;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=122;SRP=267.93;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:60:43,5,11,0,0:43:1637:5,11,0,0:193,428,0,0:-22.2796,-23.3268,-156.084,0,-122.412,-131.016,-35.2239,-157.589,-134.328,-169.506,-35.2239,-157.589,-134.328,-169.506,-169.506 0|0:58:36,7,7,0,8:36:1377:7,7,0,8:272,267,0,325:-14.9173,-11.8814,-122.377,-3.83293,-102.58,-114.37,-25.7544,-124.484,-116.477,-138.383,0,-98.7544,-90.7444,-112.652,-110.243 0|1:47:32,6,5,3,0:32:1227:6,5,3,0:227,194,123,0:-6.34078,-5.3518,-103.85,0,-89.7158,-98.8706,-5.79919,-95.5022,-90.2196,-105.26,-15.9737,-105.657,-100.376,-106.163,-116.319 0|0:15:11,0,0,0,3:11:426:0,0,0,3:0,0,0,115:-5.3641,-8.67543,-43.6029,-8.67543,-43.6029,-43.6029,-8.67543,-43.6029,-43.6029,-43.6029,0,-34.9082,-34.9082,-34.9082,-34.0051 dDocent_Contig_14355 161 . T C 710.923 . AB=0.88;ABP=34.3664;AC=1;AF=0.166667;AN=6;AO=22;CIGAR=1X;DP=37;DPB=37;DPRA=4.16667;EPP=42.4916;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=887;QR=563;RO=15;RPL=21;RPP=42.4916;RPPR=35.5824;RPR=1;RUN=1;SAF=0;SAP=50.7827;SAR=22;SRF=0;SRP=35.5824;SRR=15;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:3,22:3:120:22:887:-72.612,0,-3.66156 0/0:7:7,0:7:244:0:0:0,-2.10721,-22.287 0/0:5:5,0:5:199:0:0:0,-1.50515,-18.2881 ./.:.:.:.:.:.:.:. dDocent_Contig_14356 10 . A T 166.3 . AB=0.216216;ABP=28.8919;AC=1;AF=0.125;AN=8;AO=8;CIGAR=2X;DP=136;DPB=136;DPRA=1.12121;EPP=20.3821;EPPR=280.959;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.8125;PAO=0;PQA=0;PQR=0;PRO=0;QA=320;QR=4895;RO=128;RPL=0;RPP=20.3821;RPPR=280.959;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=128;SRP=280.959;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:37:29,8:29:1149:8:320:-18.028,0,-92.5535 0|0:53:53,0:53:1981:0:0:0,-15.9546,-178.497 0|0:24:24,0:24:906:0:0:0,-7.22472,-81.8378 0|0:22:22,0:22:859:0:0:0,-6.62266,-77.6202 dDocent_Contig_14357 17 . C T 462.857 . AB=0.358491;ABP=12.2288;AC=3;AF=0.5;AN=6;AO=19;CIGAR=1X3M;DP=53;DPB=53;DPRA=0;EPP=44.2683;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=735;QR=1230;RO=31;RPL=0;RPP=44.2683;RPPR=70.3259;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:19:9,0,10:9:359:0,10:0,374:-28.2782,-30.9875,-60.5658,0,-29.965,-26.9547 0|1:25:19,2,3:19:754:2,3:77,117:-3.89919,-3.29831,-64.772,0,-55.7578,-61.1757 0|1:9:3,0,6:3:117:0,6:0,244:-19.6293,-20.5324,-30.1444,0,-10.0071,-8.20094 .:.:.:.:.:.:.:. dDocent_Contig_14358 19 . T C 213.611 . AB=0.428571;ABP=3.94093;AC=2;AF=0.25;AN=8;AO=9;CIGAR=1X;DP=29;DPB=29;DPRA=2.625;EPP=22.5536;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=337;QR=797;RO=20;RPL=0;RPP=22.5536;RPPR=46.4397;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:2:2,0:2:77:0:0:0,-0.60206,-7.3082 0/1:18:10,8:10:399:8:297:-21.6574,0,-30.8512 0/0:6:6,0:6:241:0:0:0,-1.80618,-22.0667 0/1:3:2,1:2:80:1:40:-3.09259,0,-6.68848 dDocent_Contig_14359 118 . G C 155.63 . AB=0.363636;ABP=4.78696;AC=3;AF=0.5;AN=6;AO=7;CIGAR=1X;DP=19;DPB=19;DPRA=1.4;EPP=18.2106;EPPR=29.068;GTI=0;LEN=1;MEANALT=1;MQM=36.2857;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=232;QR=414;RO=12;RPL=0;RPP=18.2106;RPPR=29.068;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=0;SRP=29.068;SRR=12;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:99:-8.73227,-0.90309,0 0/1:11:7,4:7:241:4:133:-8.35339,0,-18.7151 0/0:5:5,0:5:173:0:0:0,-1.50515,-15.9102 ./.:.:.:.:.:.:.:. dDocent_Contig_14360 9 . A T 55.8002 . AB=0.145833;ABP=55.3066;AC=3;AF=0.375;AN=8;AO=8;CIGAR=1X;DP=78;DPB=78;DPRA=0;EPP=20.3821;EPPR=155.013;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=0.5;PAIREDR=0.685714;PAO=0;PQA=0;PQR=0;PRO=0;QA=308;QR=2657;RO=70;RPL=0;RPP=20.3821;RPPR=155.013;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=70;SRP=155.013;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:17,3:17:642:3:117:-4.88978,0,-52.0909 0/1:22:19,3:19:714:3:113:-3.91631,0,-57.9641 0/0:30:29,1:29:1110:1:39:0,-5.13434,-96.305 0/1:6:5,1:5:191:1:39:-2.09038,0,-15.7519 dDocent_Contig_14361 197 . T C 336.788 . AB=0.384615;ABP=6.01695;AC=4;AF=0.5;AN=8;AO=13;CIGAR=1X;DP=33;DPB=33;DPRA=2.41667;EPP=31.2394;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=471;QR=761;RO=20;RPL=13;RPP=31.2394;RPPR=46.4397;RPR=0;RUN=1;SAF=0;SAP=31.2394;SAR=13;SRF=0;SRP=46.4397;SRR=20;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:6,9:6:230:9:315:-24.162,0,-16.5509 1/1:3:0,3:0:0:3:117:-10.9104,-0.90309,0 0/1:11:10,1:10:375:1:39:-0.585235,0,-30.7891 0/0:4:4,0:4:156:0:0:0,-1.20412,-14.4173 dDocent_Contig_14362 9 . A G 530.343 . AB=0.265957;ABP=47.7334;AC=4;AF=0.5;AN=8;AO=25;CIGAR=1X;DP=94;DPB=94;DPRA=0;EPP=57.2971;EPPR=152.842;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.84;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=957;QR=2636;RO=69;RPL=0;RPP=57.2971;RPPR=152.842;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=69;SRP=152.842;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:10,4:10:380:4:156:-10.2029,0,-30.3387 0/1:14:11,3:11:420:3:116:-6.60328,0,-33.9368 0/1:56:39,17:39:1487:17:646:-41.6178,0,-117.249 0/1:10:9,1:9:349:1:39:-0.886264,0,-28.7605 dDocent_Contig_14363 61 . A T 120.48 . AB=0.5;ABP=3.0103;AC=1;AF=0.125;AN=8;AO=5;CIGAR=2X;DP=28;DPB=28;DPRA=1.66667;EPP=13.8677;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=179;QR=906;RO=23;RPL=5;RPP=13.8677;RPPR=52.9542;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:10:5,5:5:189:5:179:-13.4458,0,-14.3647 0|0:9:9,0:9:354:0:0:0,-2.70927,-32.2213 0|0:5:5,0:5:202:0:0:0,-1.50515,-18.5621 0|0:4:4,0:4:161:0:0:0,-1.20412,-14.8755 dDocent_Contig_14365 107 . N C 69.7057 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=6;CIGAR=3I2X;DP=7;DPB=16;DPRA=0;EPP=16.0391;EPPR=0;GTI=0;LEN=1;MEANALT=1.5;MQM=12.1667;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=222;QR=0;RO=0;RPL=0;RPP=16.0391;RPPR=0;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:4:0,4:0:0:4:148:-3.32778,-1.20412,0 .:.:.:.:.:.:.:. 1|1:3:0,2:0:0:2:74:-3.34089,-0.60206,0 .:.:.:.:.:.:.:. dDocent_Contig_14366 127 . A G 193.598 . AB=0.313725;ABP=18.3809;AC=2;AF=0.25;AN=8;AO=17;CIGAR=1X;DP=87;DPB=87;DPRA=1.19298;EPP=39.9253;EPPR=155.013;GTI=0;LEN=1;MEANALT=1;MQM=28.9412;MQMR=58.9714;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.628571;PAO=0;PQA=0;PQR=0;PRO=0;QA=588;QR=2540;RO=70;RPL=0;RPP=39.9253;RPPR=155.013;RPR=17;RUN=1;SAF=0;SAP=39.9253;SAR=17;SRF=0;SRP=155.013;SRR=70;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:41:31,10:31:1112:10:344:-11.2404,0,-88.0436 0/0:17:16,1:16:577:1:37:0,-2.45882,-49.5741 0/0:19:19,0:19:703:0:0:0,-5.71957,-63.589 0/1:10:4,6:4:148:6:207:-11.5173,0,-10.6717 dDocent_Contig_14367 20 . C T 42.7459 . AB=0.333333;ABP=4.45795;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X;DP=28;DPB=28;DPRA=0.818182;EPP=7.35324;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.961538;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=1058;RO=26;RPL=0;RPP=7.35324;RPPR=59.4686;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:6:6,0:6:244:0:0:0,-1.80618,-22.3388 0/1:6:4,2:4:162:2:82:-5.9735,0,-13.1606 0/0:10:10,0:10:406:0:0:0,-3.0103,-36.9004 0/0:6:6,0:6:246:0:0:0,-1.80618,-22.5201 dDocent_Contig_14368 69 . G T 473.418 . AB=0.275;ABP=38.1882;AC=3;AF=0.375;AN=8;AO=23;CIGAR=1X;DP=94;DPB=94;DPRA=0;EPP=52.9542;EPPR=157.185;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=872;QR=2684;RO=71;RPL=23;RPP=52.9542;RPPR=157.185;RPR=0;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=71;SRP=157.185;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:38:22,16:22:858:16:606:-43.4336,0,-66.0992 0/1:18:16,2:16:566:2:71:-1.32184,0,-45.8308 0/1:24:20,4:20:758:4:157:-7.28357,0,-61.3197 0/0:14:13,1:13:502:1:38:0,-0.417151,-41.728 dDocent_Contig_14369 44 . G A 305.664 . AB=0.5;ABP=3.0103;AC=3;AF=0.5;AN=6;AO=10;CIGAR=1X;DP=26;DPB=26;DPRA=0.944444;EPP=24.725;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=395;QR=647;RO=16;RPL=0;RPP=24.725;RPPR=37.7539;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:7,7:7:282:7:275:-20.9018,0,-21.5382 0/0:9:9,0:9:365:0:0:0,-2.70927,-33.2151 ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:120:-11.1873,-0.90309,0 dDocent_Contig_14370 116 . C T 121.962 . AB=0.714286;ABP=5.80219;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=51;DPB=51;DPRA=0.477273;EPP=13.8677;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.6304;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.891304;PAO=0;PQA=0;PQR=0;PRO=0;QA=174;QR=1490;RO=46;RPL=0;RPP=13.8677;RPPR=102.898;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=102.898;SRR=46;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:15:15,0:15:470:0:0:0,-4.51545,-42.5992 0/0:19:19,0:19:644:0:0:0,-5.71957,-58.2774 0/0:10:10,0:10:307:0:0:0,-3.0103,-27.9273 0/1:7:2,5:2:69:5:174:-13.8947,0,-4.44545 dDocent_Contig_14372 18 . G A 267.247 . AB=0.245283;ABP=32.8783;AC=1;AF=0.125;AN=8;AO=15;CIGAR=1X;DP=127;DPB=127;DPRA=2.69048;EPP=35.5824;EPPR=246.215;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=567;QR=4394;RO=112;RPL=0;RPP=35.5824;RPPR=246.215;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=112;SRP=246.215;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:53:40,13:40:1592:13:486:-28.1226,0,-127.558 0/0:28:27,1:27:1034:1:40:0,-4.43316,-89.3434 0/0:32:31,1:31:1232:1:41:0,-5.53839,-107.06 0/0:14:14,0:14:536:0:0:0,-4.21442,-48.5758 dDocent_Contig_14373 8 . C T 263.503 . AB=0.5;ABP=3.0103;AC=2;AF=0.25;AN=8;AO=10;CIGAR=1X;DP=41;DPB=41;DPRA=0.952381;EPP=24.725;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=389;QR=1192;RO=31;RPL=0;RPP=24.725;RPPR=70.3259;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:16:16,0:16:624:0:0:0,-4.81648,-56.5002 0/1:2:1,1:1:39:1:39:-3.2945,0,-3.2945 0/1:18:9,9:9:347:9:350:-26.4428,0,-26.1711 0/0:5:5,0:5:182:0:0:0,-1.50515,-16.7318 dDocent_Contig_14374 131 . C A 1081.23 . AB=0.526316;ABP=3.35316;AC=3;AF=0.375;AN=8;AO=45;CIGAR=1X;DP=91;DPB=91;DPRA=3.78947;EPP=100.727;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1401;QR=1302;RO=46;RPL=0;RPP=100.727;RPPR=102.898;RPR=45;RUN=1;SAF=0;SAP=100.727;SAR=45;SRF=0;SRP=102.898;SRR=46;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:14:14,0:14:409:0:0:0,-4.21442,-37.0942 0/1:57:27,30:27:779:30:927:-66.5579,0,-53.2229 1/1:15:0,15:0:0:15:474:-42.9628,-4.51545,0 0/0:5:5,0:5:114:0:0:0,-1.50515,-10.4866 dDocent_Contig_14375 65 . A T 659.857 . AB=0.560976;ABP=4.33437;AC=3;AF=0.375;AN=8;AO=23;CIGAR=1X;DP=50;DPB=50;DPRA=1.51852;EPP=52.9542;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=0.73913;PAIREDR=0.814815;PAO=0;PQA=0;PQR=0;PRO=0;QA=918;QR=1028;RO=27;RPL=23;RPP=52.9542;RPPR=61.6401;RPR=0;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:9:9,0:9:330:0:0:0,-2.70927,-30.0362 0/1:12:2,10:2:80:10:395:-32.2944,0,-3.97943 0/1:20:10,10:10:378:10:403:-30.6095,0,-28.3421 0/1:9:6,3:6:240:3:120:-8.47863,0,-19.2668 dDocent_Contig_14377 98 . N A 484.872 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=15;CIGAR=1X;DP=15;DPB=15;DPRA=0;EPP=35.5824;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=522;QR=0;RO=0;RPL=15;RPP=35.5824;RPPR=0;RPR=0;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:11:0,11:0:0:11:382:-34.7143,-3.31133,0 1/1:3:0,3:0:0:3:105:-9.79616,-0.90309,0 ./.:.:.:.:.:.:.:. 1/1:1:0,1:0:0:1:35:-3.49863,-0.30103,0 dDocent_Contig_14378 75 . G A 77.046 . AB=0;ABP=0;AC=2;AF=0.25;AN=8;AO=2;CIGAR=1X;DP=38;DPB=38;DPRA=0.166667;EPP=7.35324;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.38813e-21;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=78;QR=1393;RO=36;RPL=2;RPP=7.35324;RPPR=81.1833;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:9:9,0:9:329:0:0:0,-2.70927,-29.9425 0/0:16:16,0:16:639:0:0:0,-4.81648,-57.8458 0/0:11:11,0:11:425:0:0:0,-3.31133,-38.5998 1/1:2:0,2:0:0:2:78:-7.4033,-0.60206,0 dDocent_Contig_14379 40 . C A 291.26 . AB=0.333333;ABP=8.80089;AC=1;AF=0.125;AN=8;AO=8;CIGAR=6M1X2M;DP=52;DPB=56.6667;DPRA=0.857143;EPP=20.3821;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=317;QR=1467;RO=38;RPL=0;RPP=20.3821;RPPR=85.5263;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:10:10,0,0:10:393:0,0:0,0:0,-3.0103,-35.726,-3.0103,-35.726,-35.726 0|0:18:9,6,3:9:345:6,3:229,119:-16.068,0,-26.4947,-8.97665,-18.5019,-36.3854 0|0:18:18,0,0:18:689:0,0:0,0:0,-5.41854,-62.3384,-5.41854,-62.3384,-62.3384 0|1:6:1,0,5:1:40:0,5:0,198:-16.3908,-16.6919,-19.9876,0,-3.69465,-2.1895 dDocent_Contig_14381 147 . A T 100.38 . AB=0.272727;ABP=12.8806;AC=2;AF=0.25;AN=8;AO=6;CIGAR=1X;DP=28;DPB=28;DPRA=3.66667;EPP=16.0391;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=215;QR=768;RO=22;RPL=0;RPP=16.0391;RPPR=50.7827;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=50.7827;SRR=22;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:11,4:11:386:4:143:-8.706,0,-30.5608 0/1:7:5,2:5:178:2:72:-4.72951,0,-14.2614 0/0:3:3,0:3:95:0:0:0,-0.90309,-8.86421 0/0:3:3,0:3:109:0:0:0,-0.90309,-10.1681 dDocent_Contig_14382 22 . C T 182.82 . 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T C 226.61 . AB=0.170732;ABP=80.23;AC=3;AF=0.375;AN=8;AO=14;CIGAR=3M1X5M;DP=86;DPB=86.4444;DPRA=6.83333;EPP=33.4109;EPPR=146.327;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=0.969697;PAO=0;PQA=0;PQR=0;PRO=0;QA=562;QR=2555;RO=66;RPL=0;RPP=33.4109;RPPR=146.327;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=66;SRP=146.327;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:22:18,0,4,0:18:711:0,4,0:0,161,0:-8.25224,-13.6708,-72.1723,0,-58.9022,-57.6981,-13.6708,-72.1723,-58.9022,-72.1723 0|1:40:29,2,7,2:29:1114:2,7,2:76,278,82:-14.1578,-16.6584,-107.484,0,-85.1979,-89.3232,-16.1165,-101.317,-84.6607,-106.947 0|1:20:15,2,3,0:15:572:2,3,0:78,123,0:-5.64867,-3.76029,-50.0551,0,-40.5002,-46.0099,-10.1641,-50.6572,-46.913,-57.0693 0|0:4:4,0,0,0:4:158:0,0,0:0,0,0:0,-1.20412,-14.6007,-1.20412,-14.6007,-14.6007,-1.20412,-14.6007,-14.6007,-14.6007 dDocent_Contig_14395 53 . C G 57.7399 . 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AB=0.135135;ABP=45.7942;AC=5;AF=0.625;AN=8;AO=9;CIGAR=1X;DP=41;DPB=41;DPRA=0;EPP=22.5536;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=364;QR=1225;RO=32;RPL=9;RPP=22.5536;RPPR=72.4974;RPR=0;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=72.4974;SRR=32;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:21,3:21:795:3:122:-4.14777,0,-64.6241 0/1:10:9,1:9:353:1:40:-0.985379,0,-29.1173 1/1:4:0,4:0:0:4:161:-14.8753,-1.20412,0 0/1:3:2,1:2:77:1:41:-3.19148,0,-6.40511 dDocent_Contig_14399 8 . A G 332.445 . AB=0;ABP=0;AC=0;AF=0;AN=8;AO=3;CIGAR=1X2M3X;DP=85;DPB=85;DPRA=14;EPP=9.52472;EPPR=135.47;GTI=0;LEN=1;MEANALT=2;MQM=9;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0.967213;PAO=0;PQA=0;PQR=0;PRO=0;QA=118;QR=2407;RO=61;RPL=0;RPP=9.52472;RPPR=135.47;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=61;SRP=135.47;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:28:24,3,1:24:950:3,1:118,39:0,-5.81028,-83.2466,-5.3407,-82.3091,-83.5001 0|0:31:15,0,16:15:592:0,16:0,643:-33.5149,-38.0304,-86.7903,0,-49.1064,-44.2899 0|0:24:20,0,4:20:786:0,4:0,162:-3.11883,-9.13943,-73.8846,0,-65.0436,-63.8395 0|0:2:2,0,0:2:79:0,0:0,0:0,-0.60206,-7.49763,-0.60206,-7.49763,-7.49763 dDocent_Contig_14401 16 . C A 151.764 . AB=0;ABP=0;AC=2;AF=0.25;AN=8;AO=4;CIGAR=1X;DP=58;DPB=58;DPRA=0.222222;EPP=11.6962;EPPR=120.27;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.38813e-21;PAIRED=1;PAIREDR=0.833333;PAO=0;PQA=0;PQR=0;PRO=0;QA=161;QR=2169;RO=54;RPL=0;RPP=11.6962;RPPR=120.27;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:27:27,0:27:1082:0:0:0,-8.12781,-97.6618 0/0:18:18,0:18:732:0:0:0,-5.41854,-66.2037 1/1:4:0,4:0:0:4:161:-14.8753,-1.20412,0 0/0:9:9,0:9:355:0:0:0,-2.70927,-32.3112 dDocent_Contig_14402 13 . C T 134.039 . AB=0.21875;ABP=24.9965;AC=2;AF=0.25;AN=8;AO=8;CIGAR=1X;DP=52;DPB=52;DPRA=2.55556;EPP=20.3821;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.931818;PAO=0;PQA=0;PQR=0;PRO=0;QA=326;QR=1787;RO=44;RPL=0;RPP=20.3821;RPPR=98.5551;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:14,5:14:568:5:203:-12.9333,0,-45.743 0/0:14:13,1:13:524:1:41:0,-0.119853,-43.4087 0/0:6:6,0:6:245:0:0:0,-1.80618,-22.4295 0/1:13:11,2:11:450:2:82:-3.86629,0,-36.9424 dDocent_Contig_14403 15 . G A 127.681 . AB=0.384615;ABP=4.51363;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=86;DPB=86;DPRA=1.26316;EPP=20.3821;EPPR=172.385;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=312;QR=3139;RO=78;RPL=0;RPP=20.3821;RPPR=172.385;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=78;SRP=172.385;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:27:27,0:27:1093:0:0:0,-8.12781,-98.6526 0/0:35:32,3:32:1282:3:112:0,-0.0923293,-105.2 0/1:13:8,5:8:319:5:200:-14.4662,0,-25.1629 0/0:11:11,0:11:445:0:0:0,-3.31133,-40.4046 dDocent_Contig_14404 130 . G T 30.511 . AB=0.166667;ABP=20.3821;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=75;DPB=75;DPRA=0.947368;EPP=9.52472;EPPR=159.356;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=109;QR=2620;RO=72;RPL=0;RPP=9.52472;RPPR=159.356;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=159.356;SRR=72;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:34:34,0:34:1204:0:0:0,-10.235,-108.655 0/1:18:15,3:15:574:3:109:-4.74955,0,-46.5831 0/0:3:3,0:3:113:0:0:0,-0.90309,-10.5394 0/0:20:20,0:20:729:0:0:0,-6.0206,-65.938 dDocent_Contig_14406 75 . T C 107.752 . AB=0.416667;ABP=3.73412;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=34;DPB=34;DPRA=1.09091;EPP=13.8677;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=173;QR=1004;RO=29;RPL=5;RPP=13.8677;RPPR=65.983;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:7,5:7:242:5:173:-12.2979,0,-18.5054 ./.:.:.:.:.:.:.:. 0/0:19:19,0:19:660:0:0:0,-5.71957,-59.7249 0/0:3:3,0:3:102:0:0:0,-0.90309,-9.51695 dDocent_Contig_14409 11 . G A 1585.28 . AB=0.671233;ABP=21.6017;AC=5;AF=0.625;AN=8;AO=55;CIGAR=2X;DP=79;DPB=79;DPRA=0;EPP=122.441;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1.25;MQM=43.7455;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.695652;PAO=0;PQA=0;PQR=0;PRO=0;QA=2196;QR=930;RO=23;RPL=0;RPP=122.441;RPPR=52.9542;RPR=55;RUN=1;SAF=55;SAP=122.441;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:32:10,21:10:407:21:837:-61.0516,0,-27.3349 0|1:21:9,12:9:360:12:481:-33.8819,0,-26.441 0|1:20:4,16:4:163:16:637:-48.3504,0,-9.03783 1|1:6:0,6:0:0:6:241:-20.6417,-1.80618,0 dDocent_Contig_14410 143 . A G 76.6335 . AB=0.126984;ABP=79.1497;AC=2;AF=0.25;AN=8;AO=8;CIGAR=2X;DP=81;DPB=81;DPRA=3.5;EPP=20.3821;EPPR=161.528;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=325;QR=2904;RO=73;RPL=0;RPP=20.3821;RPPR=161.528;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=161.528;SRR=73;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:24:21,3:21:837:3:122:-4.14777,0,-68.4203 0|1:39:34,5:34:1361:5:203:-6.91268,0,-111.009 0|0:14:14,0:14:543:0:0:0,-4.21442,-49.2026 0|0:4:4,0:4:163:0:0:0,-1.20412,-15.0584 dDocent_Contig_14412 34 . G T 239.1 . AB=0.206897;ABP=46.29;AC=2;AF=0.25;AN=8;AO=12;CIGAR=1X;DP=95;DPB=95;DPRA=1.56757;EPP=29.068;EPPR=183.243;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=489;QR=3271;RO=83;RPL=0;RPP=29.068;RPPR=183.243;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=83;SRP=183.243;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:12,5:12:464:5:203:-13.5353,0,-36.9854 0/1:41:34,7:34:1330:7:286:-13.7726,0,-107.618 0/0:27:27,0:27:1070:0:0:0,-8.12781,-96.5843 0/0:10:10,0:10:407:0:0:0,-3.0103,-36.9906 dDocent_Contig_14413 95 . G A 68.2391 . AB=0;ABP=0;AC=2;AF=0.333333;AN=6;AO=2;CIGAR=1X;DP=14;DPB=14;DPRA=0.333333;EPP=7.35324;EPPR=29.068;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.69407e-21;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=70;QR=403;RO=12;RPL=2;RPP=7.35324;RPPR=29.068;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=12;SRP=29.068;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5,0:5:158:0:0:0,-1.50515,-14.5314 1/1:2:0,2:0:0:2:70:-6.6474,-0.60206,0 ./.:.:.:.:.:.:.:. 0/0:7:7,0:7:245:0:0:0,-2.10721,-22.3912 dDocent_Contig_14414 108 . G A 88.6398 . AB=0.166667;ABP=66.7068;AC=2;AF=0.25;AN=8;AO=11;CIGAR=1X;DP=97;DPB=97;DPRA=2.12903;EPP=26.8965;EPPR=185.414;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=346;QR=2801;RO=84;RPL=0;RPP=26.8965;RPPR=185.414;RPR=11;RUN=1;SAF=0;SAP=26.8965;SAR=11;SRF=0;SRP=185.414;SRR=84;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:20,4:20:663:4:131:-4.88944,0,-52.7563 0/0:25:25,0:25:856:0:0:0,-7.52575,-77.3551 0/1:42:33,7:33:1101:7:215:-7.37232,0,-87.1213 0/0:6:6,0:6:181:0:0:0,-1.80618,-16.5856 dDocent_Contig_14415 55 . A T 71.7271 . AB=0.0909091;ABP=34.9902;AC=0;AF=0;AN=8;AO=2;CIGAR=2M5I3M1X;DP=35;DPB=41.3333;DPRA=8.8;EPP=3.0103;EPPR=59.4686;GTI=0;LEN=1;MEANALT=3;MQM=56;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=78;QR=936;RO=26;RPL=2;RPP=7.35324;RPPR=59.4686;RPR=0;RUN=1;SAF=1;SAP=3.0103;SAR=1;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:4:4,0,0:4:148:0,0:0,0:0,-1.20412,-13.6814,-1.20412,-13.6814,-13.6814 0|0:22:14,2,5:14:499:2,5:78,162:-8.85379,-6.65574,-46.7597,0,-34.296,-39.1874 0|0:8:7,0,1:7:259:0,1:0,36:-1.19004,-3.29724,-24.4934,0,-21.5572,-21.2562 0|0:1:1,0,0:1:30:0,0:0,0:0,-0.30103,-2.99957,-0.30103,-2.99957,-2.99957 dDocent_Contig_14416 62 . C G 53.6445 . AB=0.272727;ABP=7.94546;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=31;DPB=31;DPRA=1.65;EPP=9.52472;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=108;QR=1077;RO=28;RPL=3;RPP=9.52472;RPPR=63.8115;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:8,3:8:317:3:108:-6.7621,0,-25.5852 0/0:12:12,0:12:451:0:0:0,-3.61236,-40.9269 0/0:6:6,0:6:231:0:0:0,-1.80618,-21.1574 0/0:2:2,0:2:78:0:0:0,-0.60206,-7.40347 dDocent_Contig_14417 40 . G T 69.6837 . AB=0.192308;ABP=24.391;AC=2;AF=0.25;AN=8;AO=5;CIGAR=1X;DP=49;DPB=49;DPRA=1.13043;EPP=13.8677;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=192;QR=1755;RO=44;RPL=0;RPP=13.8677;RPPR=98.5551;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:21:21,0:21:854:0:0:0,-6.32163,-77.1703 0/1:18:14,4:14:549:4:152:-8.62701,0,-44.3283 0/1:8:7,1:7:273:1:40:-1.58744,0,-22.5237 0/0:2:2,0:2:79:0:0:0,-0.60206,-7.49724 dDocent_Contig_14420 7 . C T 34.8714 . AB=0.157895;ABP=22.325;AC=2;AF=0.25;AN=8;AO=3;CIGAR=1X;DP=62;DPB=62;DPRA=0.44186;EPP=3.73412;EPPR=114.344;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.333333;PAIREDR=0.915254;PAO=0;PQA=0;PQR=0;PRO=0;QA=117;QR=2267;RO=59;RPL=0;RPP=9.52472;RPPR=131.127;RPR=3;RUN=1;SAF=2;SAP=3.73412;SAR=1;SRF=57;SRP=114.344;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:10,1:10:390:1:37:-0.386499,0,-32.1474 0/0:27:27,0:27:1026:0:0:0,-8.12781,-92.6495 0/0:16:16,0:16:617:0:0:0,-4.81648,-55.87 0/1:8:6,2:6:234:2:80:-5.18333,0,-19.0229 dDocent_Contig_14421 1 . N G 76.8682 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:81:-7.68573,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_14424 16 . G T 178.73 . AB=0.145833;ABP=107.603;AC=1;AF=0.125;AN=8;AO=24;CIGAR=1X;DP=251;DPB=251;DPRA=2.36559;EPP=55.1256;EPPR=282.728;GTI=0;LEN=1;MEANALT=1;MQM=42.125;MQMR=46.6035;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=0;PAIREDR=0.101322;PAO=0;PQA=0;PQR=0;PRO=0;QA=958;QR=8985;RO=227;RPL=0;RPP=55.1256;RPPR=495.935;RPR=24;RUN=1;SAF=0;SAP=55.1256;SAR=24;SRF=28;SRP=282.728;SRR=199;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:96:82,14:82:3212:14:561:-19.2708,0,-238.189 0/0:60:55,5:55:2181:5:195:0,-1.23352,-170.341 0/0:64:59,5:59:2351:5:202:0,-1.60808,-187.981 0/0:31:31,0:31:1241:0:0:0,-9.33193,-108.612 dDocent_Contig_14428 11 . A T 922.222 . AB=0.423529;ABP=7.3277;AC=4;AF=0.5;AN=8;AO=36;CIGAR=1X;DP=85;DPB=85;DPRA=0;EPP=81.1833;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=55.8056;MQMR=58.5306;NS=4;NUMALT=1;ODDS=0;PAIRED=0.888889;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1431;QR=1983;RO=49;RPL=0;RPP=81.1833;RPPR=109.412;RPR=36;RUN=1;SAF=36;SAP=81.1833;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:7:5,2:5:203:2:80:-3.49046,0,-16.4774 0/1:32:18,14:18:728:14:558:-39.0207,0,-56.1925 0/1:30:20,10:20:813:10:391:-26.0821,0,-64.3679 0/1:16:6,10:6:239:10:402:-31.0234,0,-17.0631 dDocent_Contig_14429 21 . T G 104.224 . AB=0.217391;ABP=18.9659;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=115;DPB=115;DPRA=0.75;EPP=13.8677;EPPR=241.872;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=204;QR=4385;RO=110;RPL=0;RPP=13.8677;RPPR=241.872;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=110;SRP=241.872;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:18,5:18:727:5:204:-11.8203,0,-58.831 0/0:43:43,0:43:1724:0:0:0,-12.9443,-155.375 0/0:36:36,0:36:1427:0:0:0,-10.8371,-128.683 0/0:13:13,0:13:507:0:0:0,-3.91339,-45.9636 dDocent_Contig_14431 134 . C T 63.521 . AB=0.428571;ABP=3.32051;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=22;DPB=22;DPRA=0.933333;EPP=9.52472;EPPR=36.0395;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.947368;PAO=0;PQA=0;PQR=0;PRO=0;QA=107;QR=684;RO=19;RPL=0;RPP=9.52472;RPPR=44.2683;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=1;SRP=36.0395;SRR=18;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:7:4,3:4:147:3:107:-7.87496,0,-11.4827 ./.:.:.:.:.:.:.:. 0/0:7:7,0:7:255:0:0:0,-2.10721,-23.3001 0/0:8:8,0:8:282:0:0:0,-2.40824,-25.7198 dDocent_Contig_14433 12 . C A 65.3876 . AB=0.12766;ABP=59.6072;AC=2;AF=0.25;AN=8;AO=6;CIGAR=1X;DP=76;DPB=76;DPRA=1.62069;EPP=16.0391;EPPR=155.013;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.371429;PAO=0;PQA=0;PQR=0;PRO=0;QA=242;QR=2807;RO=70;RPL=0;RPP=16.0391;RPPR=155.013;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=70;SRP=155.013;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:19:19,0:19:775:0:0:0,-5.71957,-70.0685 0/1:34:29,5:29:1169:5:201:-8.23608,0,-95.2504 0/0:10:10,0:10:386:0:0:0,-3.0103,-35.0883 0/1:13:12,1:12:477:1:41:-0.181177,0,-39.3665 dDocent_Contig_14434 27 . A G 285.282 . AB=0.295455;ABP=19.0002;AC=2;AF=0.25;AN=8;AO=15;CIGAR=1X1M1X;DP=75;DPB=75;DPRA=3.83333;EPP=35.5824;EPPR=126.784;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=564;QR=2245;RO=57;RPL=0;RPP=35.5824;RPPR=126.784;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:25:11,11,3:11:436:11,3:406,122:-29.8513,0,-32.5685,-23.0913,-25.8144,-58.0897 0|0:25:23,2,0:23:921:2,0:78,0:0,-0.122449,-75.7955,-6.92369,-76.3975,-82.8083 0|1:19:17,2,0:17:644:2,0:80,0:-1.87222,0,-52.5697,-6.98973,-53.1717,-59.7641 0|0:6:6,0,0:6:244:0,0:0,0:0,-1.80618,-22.3388,-1.80618,-22.3388,-22.3388 dDocent_Contig_14435 30 . A G 398.308 . AB=0.365385;ABP=11.1951;AC=3;AF=0.375;AN=8;AO=20;CIGAR=1X3M6D1X;DP=68;DPB=53.2727;DPRA=0;EPP=46.4397;EPPR=92.0407;GTI=0;LEN=1;MEANALT=2;MQM=40.45;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.2;PAIREDR=0.731707;PAO=0;PQA=0;PQR=0;PRO=0;QA=774;QR=1620;RO=41;RPL=0;RPP=46.4397;RPPR=92.0407;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:17:12,0,5:12:470:0,5:0,191:-9.99294,-13.6053,-52.2962,0,-39.0379,-37.5327 0|1:10:4,1,4:4:159:1,4:7,152:-9.81578,-10.9638,-23.796,0,-13.2364,-12.0802 0|1:25:14,0,10:14:553:0,10:0,393:-25.4197,-29.6341,-75.1574,0,-45.5203,-42.51 0|0:16:11,4,1:11:438:4,1:30,38:0,-2.98429,-37.9009,-0.505563,-36.3621,-36.5269 dDocent_Contig_14436 28 . T A 58.1137 . AB=0.222222;ABP=9.04217;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X1M1X1M1D1M1X8M;DP=24;DPB=23.9333;DPRA=3;EPP=7.35324;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0.947368;PAO=0;PQA=0;PQR=0;PRO=0;QA=79;QR=743;RO=19;RPL=0;RPP=7.35324;RPPR=44.2683;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:2:2,0,0:2:78:0,0:0,0:0,-0.60206,-7.40347,-0.60206,-7.40347,-7.40347 0|0:4:4,0,0:4:151:0,0:0,0:0,-1.20412,-13.9575,-1.20412,-13.9575,-13.9575 0|1:9:7,2,0:7:276:2,0:79,0:-4.78836,0,-22.5004,-6.89557,-23.1025,-29.6036 0|0:9:6,0,2:6:238:0,2:0,76:-4.41968,-6.22586,-25.8268,0,-19.5977,-18.9957 dDocent_Contig_14437 77 . A G 335.461 . AB=0.466667;ABP=3.29983;AC=3;AF=0.375;AN=8;AO=14;CIGAR=1X;DP=38;DPB=38;DPRA=1.25;EPP=33.4109;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=521;QR=917;RO=24;RPL=14;RPP=33.4109;RPPR=55.1256;RPR=0;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:6,6:6:232:6:216:-16.1725,0,-17.6366 0/1:9:5,4:5:188:4:150:-11.1554,0,-14.5742 0/1:9:5,4:5:193:4:155:-11.6162,0,-15.0321 0/0:8:8,0:8:304:0:0:0,-2.40824,-27.7176 dDocent_Contig_14439 47 . T C 227.932 . AB=0.36;ABP=7.26639;AC=2;AF=0.25;AN=8;AO=9;CIGAR=1X;DP=48;DPB=48;DPRA=1.08696;EPP=22.5536;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=366;QR=1578;RO=39;RPL=0;RPP=22.5536;RPPR=87.6977;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:11,0:11:445:0:0:0,-3.31133,-40.4055 0/1:22:15,7:15:611:7:285:-19.4015,0,-48.7048 0/0:12:12,0:12:481:0:0:0,-3.61236,-43.6409 0/1:3:1,2:1:41:2:81:-6.78264,0,-3.19148 dDocent_Contig_14441 10 . G C 33.7162 . AB=0.222222;ABP=9.04217;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X;DP=56;DPB=56;DPRA=0.574468;EPP=7.35324;EPPR=120.27;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=53.4259;NS=4;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=0.759259;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=2159;RO=54;RPL=0;RPP=7.35324;RPPR=120.27;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:16:16,0:16:636:0:0:0,-4.81648,-52.7669 0/0:11:11,0:11:446:0:0:0,-3.31133,-39.6183 0/0:20:20,0:20:795:0:0:0,-6.0206,-67.2512 0/1:9:7,2:7:282:2:82:-5.07041,0,-23.0437 dDocent_Contig_14442 41 . A G 70.222 . AB=0.210526;ABP=16.8392;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1M4I3M1X;DP=73;DPB=76.2;DPRA=1.05556;EPP=11.6962;EPPR=150.67;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=153;QR=2685;RO=68;RPL=0;RPP=11.6962;RPPR=150.67;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=68;SRP=150.67;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:19:15,4:15:591:4:153:-8.42014,0,-47.8112 0|0:17:16,0:16:628:0:0:0,-4.81648,-56.4487 0|0:25:25,0:25:989:0:0:0,-7.52575,-89.3123 0|0:12:12,0:12:477:0:0:0,-3.61236,-43.2819 dDocent_Contig_14443 66 . G C 94.0368 . AB=0.156863;ABP=55.1682;AC=3;AF=0.375;AN=8;AO=8;CIGAR=1X;DP=64;DPB=64;DPRA=1.30769;EPP=20.3821;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.857143;PAO=0;PQA=0;PQR=0;PRO=0;QA=322;QR=2219;RO=56;RPL=8;RPP=20.3821;RPPR=124.613;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:18,3:18:717:3:121:-4.95836,0,-58.5349 0/0:13:13,0:13:506:0:0:0,-3.91339,-45.8821 0/1:23:20,3:20:800:3:120:-4.264,0,-65.394 0/1:7:5,2:5:196:2:81:-5.57852,0,-15.9066 dDocent_Contig_14444 10 . G A 1808.49 . AB=0.558559;ABP=6.31642;AC=4;AF=0.5;AN=8;AO=62;CIGAR=1X;DP=111;DPB=111;DPRA=0;EPP=137.642;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=0.83871;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2448;QR=1958;RO=49;RPL=0;RPP=137.642;RPPR=109.412;RPR=62;RUN=1;SAF=62;SAP=137.642;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:33:18,15:18:721:15:605:-44.8533,0,-55.2812 0/1:36:11,25:11:432:25:973:-77.0302,0,-28.3909 0/1:22:10,12:10:403:12:477:-36.6589,0,-30.0069 0/1:20:10,10:10:402:10:393:-29.7049,0,-30.5182 dDocent_Contig_14445 86 . A G 135.949 . AB=0.5;ABP=3.0103;AC=2;AF=0.25;AN=8;AO=9;CIGAR=1X;DP=39;DPB=39;DPRA=0.848485;EPP=22.5536;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=247;QR=1002;RO=30;RPL=9;RPP=22.5536;RPPR=68.1545;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:4,5:4:133:5:159:-11.9148,0,-9.5897 0/0:11:11,0:11:366:0:0:0,-3.31133,-33.263 0/0:12:11,1:11:370:1:11:0,-2.51236,-32.5259 0/1:7:4,3:4:133:3:77:-5.07792,0,-10.1918 dDocent_Contig_14446 123 . G A 448.354 . AB=0.273973;ABP=35.4039;AC=4;AF=0.5;AN=8;AO=20;CIGAR=1X4M;DP=78;DPB=78;DPRA=4.86667;EPP=46.4397;EPPR=70.3259;GTI=0;LEN=1;MEANALT=3.33333;MQM=54.3;MQMR=60;NS=4;NUMALT=4;ODDS=0;PAIRED=0.55;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=676;QR=1017;RO=31;RPL=0;RPP=46.4397;RPPR=70.3259;RPR=20;RUN=1;SAF=0;SAP=46.4397;SAR=20;SRF=0;SRP=70.3259;SRR=31;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:51:20,3,13,3,10:20:660:3,13,3,10:104,454,105,336:-21.2292,-18.7862,-71.2817,-13.7375,-58.6464,-63.188,-18.7071,-63.6478,-58.5674,-71.2027,0,-44.9598,-39.8887,-44.8808,-50.409 0|1:14:7,0,3,0,4:7:223:0,3,0,4:0,104,0,136:-9.03337,-11.1406,-29.1285,-8.08772,-26.0319,-25.1289,-11.1406,-29.1285,-26.0319,-29.1285,0,-18.0761,-14.9923,-18.0761,-16.872 1|1:8:0,0,2,0,6:0:0:0,2,0,6:0,68,0,204:-18.398,-18.398,-18.398,-16.355,-16.355,-15.7529,-18.398,-18.398,-16.355,-18.398,-2.23768,-2.23768,0,-2.23768,-0.4315 0|0:5:4,0,1,0,0:4:134:0,1,0,0:0,35,0,0:0,-1.20412,-12.2047,-0.00933531,-11.1966,-10.8955,-1.20412,-12.2047,-11.1966,-12.2047,-1.20412,-12.2047,-11.1966,-12.2047,-12.2047 dDocent_Contig_14448 147 . A G 152.346 . AB=0;ABP=0;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1X;DP=24;DPB=24;DPRA=0.4;EPP=11.6962;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.69407e-21;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=163;QR=741;RO=20;RPL=0;RPP=11.6962;RPPR=46.4397;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=46.4397;SRR=20;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:9:9,0:9:336:0:0:0,-2.70927,-30.5845 0/0:11:11,0:11:405:0:0:0,-3.31133,-36.7904 1/1:4:0,4:0:0:4:163:-15.0584,-1.20412,0 ./.:.:.:.:.:.:.:. dDocent_Contig_14449 24 . G T 891.199 . AB=0.194915;ABP=98.4079;AC=2;AF=0.25;AN=8;AO=23;CIGAR=3X2M3X2M;DP=118;DPB=136.2;DPRA=0;EPP=52.9542;EPPR=100.727;GTI=0;LEN=1;MEANALT=3.25;MQM=60;MQMR=60;NS=4;NUMALT=4;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=917;QR=1696;RO=45;RPL=0;RPP=52.9542;RPPR=100.727;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:32:12,5,5,10,0:12:454:5,5,10,0:155,196,399,0:-29.2727,-20.5415,-56.2468,-16.7611,-41.6331,-52.4788,0,-24.8851,-21.108,-34.2236,-32.8851,-57.752,-53.9839,-37.2339,-70.105 0|0:30:18,5,3,4,0:18:672:5,3,4,0:167,116,159,0:-8.0768,0,-53.5024,-3.96114,-45.4783,-58.0869,-0.389706,-41.9129,-45.8941,-54.2206,-13.4953,-55.0075,-58.99,-55.4247,-68.5198 0|1:33:11,4,10,8,0:11:419:4,10,8,0:140,377,319,0:-27.5776,-19.5061,-52.6698,0,-22.9864,-31.3589,-4.60707,-27.5973,-8.08893,-36.5739,-30.889,-53.8739,-34.3692,-38.9821,-65.2592 0|0:23:4,12,3,1,3:4:151:12,3,1,3:408,113,40,121:-31.5481,0,-8.75862,-23.4888,-3.11478,-34.9665,-29.4548,-9.07454,-32.5723,-41.5339,-22.7694,-2.39042,-25.8874,-31.8537,-34.2481 dDocent_Contig_14450 54 . T G 403.606 . AB=0.361702;ABP=10.8184;AC=4;AF=0.5;AN=8;AO=17;CIGAR=1X;DP=47;DPB=47;DPRA=0;EPP=39.9253;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.823529;PAIREDR=0.733333;PAO=0;PQA=0;PQR=0;PRO=0;QA=671;QR=1193;RO=30;RPL=17;RPP=39.9253;RPPR=68.1545;RPR=0;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:12,3:12:479:3:118:-6.48613,0,-38.9439 0/1:10:5,5:5:198:5:193:-14.7279,0,-15.1862 0/1:18:11,7:11:434:7:279:-20.0628,0,-33.9895 0/1:4:2,2:2:82:2:81:-6.48161,0,-6.57556 dDocent_Contig_14451 15 . G C 64.1696 . AB=0.139535;ABP=51.5402;AC=2;AF=0.25;AN=8;AO=8;CIGAR=1X;DP=72;DPB=72;DPRA=7.66667;EPP=20.3821;EPPR=141.985;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=325;QR=2514;RO=64;RPL=0;RPP=20.3821;RPPR=141.985;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=64;SRP=141.985;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:23,4:23:920:4:162:-6.83915,0,-74.9764 0/0:26:24,2:24:917:2:81:0,-0.141046,-75.1382 0/1:16:14,2:14:556:2:82:-2.9632,0,-45.5651 0/0:3:3,0:3:121:0:0:0,-0.90309,-11.2802 dDocent_Contig_14452 7 . C T 8657.23 . AB=0.0365854;ABP=461.879;AC=0;AF=0;AN=8;AO=12;CIGAR=1X3M1X;DP=359;DPB=359;DPRA=0;EPP=29.068;EPPR=68.1545;GTI=0;LEN=1;MEANALT=3.75;MQM=40;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=463;QR=1150;RO=30;RPL=0;RPP=29.068;RPPR=68.1545;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:113:5,3,2,102:5:192:3,2,102:116,78,4002:-315.191,-307.807,-322.666,-310.553,-317.427,-325.713,-14.9245,-21.8155,-24.5597,0 0|0:109:17,3,15,74:17:655:3,15,74:117,592,2918:-204.852,-201.028,-253.913,-161.252,-206.1,-210.526,0,-44.8421,-5.06596,-31.5052 0|0:98:8,5,3,81:8:303:5,3,81:192,123,3194:-238.936,-226.614,-249.951,-231.19,-241.303,-255.13,0,-10.1212,-14.686,-0.46259 0|0:39:0,1,5,32:0:0:1,5,32:38,204,1263:-110.602,-107.675,-107.374,-93.7645,-90.8367,-92.2594,-16.8908,-13.9671,0,-7.25781 dDocent_Contig_14453 107 . N C 459.367 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=23;CIGAR=1X;DP=23;DPB=23;DPRA=0;EPP=52.9542;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=25.3913;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=0.0869565;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=686;QR=0;RO=0;RPL=0;RPP=52.9542;RPPR=0;RPR=23;RUN=1;SAF=0;SAP=52.9542;SAR=23;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:4:0,4:0:0:4:129:-6.15131,-1.20412,0 1/1:10:0,10:0:0:10:290:-19.0005,-3.0103,0 1/1:8:0,8:0:0:8:236:-17.7788,-2.40824,0 1/1:1:0,1:0:0:1:31:-2.40295,-0.30103,0 dDocent_Contig_14455 7 . C A 630.329 . AB=0.212903;ABP=113.98;AC=3;AF=0.375;AN=8;AO=34;CIGAR=1X;DP=175;DPB=175;DPRA=0;EPP=76.8404;EPPR=309.188;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=52.1915;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=0.5;PAIREDR=0.567376;PAO=0;PQA=0;PQR=0;PRO=0;QA=1306;QR=5419;RO=141;RPL=0;RPP=76.8404;RPPR=309.188;RPR=34;RUN=1;SAF=34;SAP=76.8404;SAR=0;SRF=141;SRP=309.188;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:44:38,6:38:1454:6:234:-8.18578,0,-100.86 0/1:54:42,12:42:1607:12:454:-24.9514,0,-118.325 0/1:57:42,15:42:1622:15:579:-35.2936,0,-129.085 0/0:20:19,1:19:736:1:39:0,-2.12404,-58.9415 dDocent_Contig_14456 185 . C T 62.3762 . AB=0.272727;ABP=7.94546;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=26;DPB=26;DPRA=1.46667;EPP=9.52472;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=928;RO=23;RPL=3;RPP=9.52472;RPPR=52.9542;RPR=0;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=52.9542;SRR=23;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:2:2,0:2:79:0:0:0,-0.60206,-7.49763 0/1:11:8,3:8:327:3:122:-8.06116,0,-26.4888 0/0:13:13,0:13:522:0:0:0,-3.91339,-47.3263 ./.:.:.:.:.:.:.:. dDocent_Contig_14457 9 . T A 415.243 . AB=0.4;ABP=6.05036;AC=4;AF=0.5;AN=8;AO=17;CIGAR=1X;DP=52;DPB=52;DPRA=0;EPP=39.9253;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.352941;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=643;QR=1334;RO=35;RPL=0;RPP=39.9253;RPPR=79.0118;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:15:14,1:14:529:1:39:0,-0.618885,-44.054 0/1:24:14,10:14:533:10:374:-26.7823,0,-41.089 0/1:11:7,4:7:272:4:153:-10.8303,0,-21.5359 1/1:2:0,2:0:0:2:77:-7.30914,-0.60206,0 dDocent_Contig_14458 10 . G A 621 . AB=0.357143;ABP=5.49198;AC=5;AF=0.625;AN=8;AO=19;CIGAR=1M2D1M2X2M3X1M1X;DP=36;DPB=33.0769;DPRA=1.16667;EPP=44.2683;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=740;QR=654;RO=17;RPL=0;RPP=44.2683;RPPR=39.9253;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:8:8,0:8:315:0:0:0,-2.40824,-28.7162 0|1:14:9,5:9:339:5:199:-14.0745,0,-26.6467 1|1:12:0,12:0:0:12:462:-41.9255,-3.61236,0 1|1:2:0,2:0:0:2:79:-7.49763,-0.60206,0 dDocent_Contig_14459 26 . C G 138.919 . AB=0.7;ABP=6.48466;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=57;DPB=57;DPRA=0.638298;EPP=18.2106;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=31.8571;MQMR=57;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.88;PAO=0;PQA=0;PQR=0;PRO=0;QA=234;QR=1954;RO=50;RPL=0;RPP=18.2106;RPPR=111.584;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=45;SRP=72.4974;SRR=5;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:27:27,0:27:1051:0:0:0,-8.12781,-93.6238 0/1:10:3,7:3:123:7:234:-15.5908,0,-8.45449 0/0:16:16,0:16:616:0:0:0,-4.81648,-55.7161 0/0:4:4,0:4:164:0:0:0,-1.20412,-15.1499 dDocent_Contig_14460 73 . A C 56.8257 . AB=0.13253;ABP=100.36;AC=3;AF=0.375;AN=8;AO=11;CIGAR=1X;DP=130;DPB=130;DPRA=0.588652;EPP=26.8965;EPPR=261.416;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.983193;PAO=0;PQA=0;PQR=0;PRO=0;QA=389;QR=4017;RO=119;RPL=11;RPP=26.8965;RPPR=261.416;RPR=0;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=119;SRP=261.416;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:47:47,0:47:1601:0:0:0,-14.1484,-144.372 0/1:50:44,6:44:1472:6:213:-4.46397,0,-117.713 0/1:23:20,3:20:664:3:106:-2.96532,0,-53.1453 0/1:10:8,2:8:280:2:70:-3.63682,0,-22.529 dDocent_Contig_14461 34 . G A 66.9439 . AB=0.122222;ABP=114.576;AC=4;AF=0.5;AN=8;AO=11;CIGAR=1X;DP=90;DPB=90;DPRA=0;EPP=26.8965;EPPR=174.557;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.818182;PAIREDR=0.886076;PAO=0;PQA=0;PQR=0;PRO=0;QA=427;QR=3068;RO=79;RPL=0;RPP=26.8965;RPPR=174.557;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=79;SRP=174.557;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:32:28,4:28:1104:4:151:-4.32146,0,-90.0131 0/1:23:21,2:21:789:2:82:-0.855988,0,-64.3983 0/1:28:25,3:25:975:3:113:-2.10808,0,-79.6263 0/1:7:5,2:5:200:2:81:-5.57852,0,-16.2723 dDocent_Contig_14463 10 . G A 2858.46 . AB=0.142857;ABP=1554.06;AC=4;AF=0.5;AN=8;AO=200;CIGAR=1X;DP=1400;DPB=1400;DPRA=0;EPP=437.305;EPPR=2604.43;GTI=0;LEN=1;MEANALT=1.5;MQM=59.93;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.735;PAIREDR=0.954925;PAO=0;PQA=0;PQR=0;PRO=0;QA=7935;QR=47431;RO=1198;RPL=0;RPP=437.305;RPPR=2604.43;RPR=200;RUN=1;SAF=200;SAP=437.305;SAR=0;SRF=1198;SRP=2604.43;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:493:415,77:415:16310:77:3041:-125.232,0,-1318.16 0/1:353:302,51:302:11990:51:2025:-76.1746,0,-972.027 0/1:385:332,53:332:13223:53:2127:-75.7047,0,-1073.2 0/1:169:149,19:149:5908:19:742:-16.1321,0,-480.55 dDocent_Contig_14464 107 . N G 191.458 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=6;CIGAR=1X;DP=6;DPB=6;DPRA=0;EPP=16.0391;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=195;QR=0;RO=0;RPL=0;RPP=16.0391;RPPR=0;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:1:0,1:0:0:1:35:-3.49863,-0.30103,0 1/1:2:0,2:0:0:2:69:-6.55266,-0.60206,0 1/1:3:0,3:0:0:3:91:-8.49142,-0.90309,0 dDocent_Contig_14465 44 . G A 1669.78 . AB=0.0647482;ABP=231.734;AC=0;AF=0;AN=8;AO=9;CIGAR=1X3M3D4M;DP=144;DPB=121.364;DPRA=0;EPP=22.5536;EPPR=94.2121;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=4;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=357;QR=1584;RO=42;RPL=9;RPP=22.5536;RPPR=94.2121;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:73:7,5,18,24,18:7:269:5,18,24,18:202,696,861,687:-103.18,-88.6316,-109.211,-48.1193,-53.5475,-64.7859,-35.0829,-40.5104,0,-49.9417,-48.9228,-54.3509,-13.8371,-0.804497,-65.5892 0|0:35:20,2,2,10,0:20:773:2,2,10,0:75,79,368,0:-24.0542,-23.9315,-86.8251,-23.5708,-80.9254,-86.4662,0,-57.3439,-56.9845,-60.4759,-30.0748,-87.4272,-87.0683,-63.4862,-93.57 0|0:31:13,2,14,2,0:13:475:2,14,2,0:80,557,65,0:-41.9762,-39.2982,-77.4929,0,-32.2146,-34.595,-40.6512,-72.8524,-33.5681,-78.8417,-45.8896,-78.095,-38.8094,-79.4438,-84.6866 0|0:5:2,0,1,2,0:2:67:0,1,2,0:0,41,71,0:-5.14622,-5.74828,-11.1568,-2.34599,-7.75982,-7.45879,0,-5.37407,-1.96509,-4.77201,-5.74828,-11.1568,-7.75982,-5.37407,-11.1568 dDocent_Contig_14466 13 . C T 396.417 . AB=0.246575;ABP=43.7328;AC=3;AF=0.375;AN=8;AO=21;CIGAR=1X;DP=111;DPB=111;DPRA=0;EPP=48.6112;EPPR=196.271;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.966292;PAO=0;PQA=0;PQR=0;PRO=0;QA=853;QR=3586;RO=89;RPL=0;RPP=48.6112;RPPR=196.271;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=89;SRP=196.271;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:17,11:17:679:11:449:-32.337,0,-53.0072 0/1:27:23,4:23:919:4:160:-6.65562,0,-74.8842 0/0:38:34,3:34:1374:3:121:0,-0.198577,-112.65 0/1:18:15,3:15:614:3:123:-6.04625,0,-50.1779 dDocent_Contig_14467 21 . A T 94.6985 . AB=0.115385;ABP=36.4176;AC=1;AF=0.125;AN=8;AO=3;CIGAR=5M1X1M1X3M1X1M1X1M1I1M1X2M;DP=87;DPB=73.8947;DPRA=1.26829;EPP=9.52472;EPPR=113.755;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=117;QR=1980;RO=51;RPL=0;RPP=9.52472;RPPR=113.755;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:26:16,3,2,0:16:628:3,2,0:117,70,0:-4.81831,0,-50.7878,-3.95378,-46.0124,-55.0292,-9.63479,-51.6909,-55.6313,-61.31 0|0:20:7,0,0,3:7:275:0,0,3:0,0,123:-8.04931,-10.1565,-32.775,-10.1565,-32.775,-32.775,0,-22.62,-22.62,-21.7169 0|0:29:17,0,0,0:17:648:0,0,0:0,0,0:0,-5.11751,-58.2602,-5.11751,-58.2602,-58.2602,-5.11751,-58.2602,-58.2602,-58.2602 0|0:12:11,0,0,0:11:429:0,0,0:0,0,0:0,-3.31133,-38.556,-3.31133,-38.556,-38.556,-3.31133,-38.556,-38.556,-38.556 dDocent_Contig_14469 106 . N T 128.53 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=4;CIGAR=2X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=7.37776;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=139;QR=0;RO=0;RPL=0;RPP=11.6962;RPPR=0;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. 1|1:4:0,4:0:0:4:139:-12.8527,-1.20412,0 .:.:.:.:.:.:.:. dDocent_Contig_14470 13 . G A 315.772 . AB=0.21519;ABP=58.6715;AC=4;AF=0.5;AN=8;AO=17;CIGAR=2X;DP=79;DPB=79;DPRA=0;EPP=39.9253;EPPR=137.642;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.983871;PAO=0;PQA=0;PQR=0;PRO=0;QA=676;QR=2452;RO=62;RPL=0;RPP=39.9253;RPPR=137.642;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:19:15,4:15:588:4:156:-8.69614,0,-47.5404 0|1:37:28,9:28:1115:9:359:-21.5352,0,-89.5021 0|1:20:18,2:18:709:2:81:-1.66513,0,-58.1159 0|1:3:1,2:1:40:2:80:-6.68848,0,-3.09259 dDocent_Contig_14471 9 . T C 240.192 . AB=0.265306;ABP=26.4533;AC=3;AF=0.375;AN=8;AO=13;CIGAR=1X;DP=56;DPB=56;DPRA=2.33333;EPP=31.2394;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=48.9231;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=0.538462;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=507;QR=1641;RO=43;RPL=0;RPP=31.2394;RPPR=96.3836;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:7:7,0:7:269:0:0:0,-2.10721,-24.5747 0/1:27:23,4:23:868:4:156:-6.28948,0,-70.3075 0/1:17:10,7:10:387:7:272:-17.1352,0,-30.0701 0/1:5:3,2:3:117:2:79:-5.99248,0,-9.40523 dDocent_Contig_14472 12 . T A 1690.63 . AB=0.554217;ABP=5.12945;AC=5;AF=0.625;AN=8;AO=60;CIGAR=1X;DP=97;DPB=97;DPRA=0;EPP=133.299;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2201;QR=1478;RO=37;RPL=0;RPP=133.299;RPPR=83.3548;RPR=60;RUN=1;SAF=60;SAP=133.299;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:14:0,14:0:0:14:514:-46.6011,-4.21442,0 0/1:51:27,24:27:1078:24:882:-64.35,0,-81.9575 0/1:20:5,15:5:196:15:548:-43.6378,0,-11.9916 0/1:12:5,7:5:204:7:257:-19.8716,0,-15.1317 dDocent_Contig_14473 9 . T G 600.956 . AB=0.0655738;ABP=103.005;AC=0;AF=0;AN=8;AO=4;CIGAR=1X1M1X;DP=96;DPB=96;DPRA=0;EPP=11.6962;EPPR=144.156;GTI=0;LEN=1;MEANALT=2.5;MQM=28.5;MQMR=59.5692;NS=4;NUMALT=2;ODDS=6.93889e-18;PAIRED=0;PAIREDR=0.861538;PAO=0;PQA=0;PQR=0;PRO=0;QA=132;QR=2552;RO=65;RPL=0;RPP=11.6962;RPPR=144.156;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=65;SRP=144.156;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:23:14,2,7:14:541:2,7:58,283:-19.2588,-20.1787,-63.9941,0,-41.261,-42.4685 0|0:38:24,2,11:24:951:2,11:74,443:-29.3093,-31.3447,-108.974,0,-73.0864,-74.9701 0|0:27:21,0,6:21:825:0,6:0,238:-13.6533,-19.9749,-87.8258,0,-68.2461,-66.4399 0|0:8:6,0,2:6:235:0,2:0,81:-5.27212,-7.0783,-26.3928,0,-19.7154,-19.1134 dDocent_Contig_14474 17 . A G 36.7263 . AB=0.25;ABP=7.35324;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X;DP=61;DPB=61;DPRA=0.45283;EPP=7.35324;EPPR=131.127;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=2367;RO=59;RPL=0;RPP=7.35324;RPPR=131.127;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=59;SRP=131.127;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:30:30,0:30:1197:0:0:0,-9.0309,-108.006 0/0:19:19,0:19:768:0:0:0,-5.71957,-69.4409 0/1:8:6,2:6:240:2:82:-5.37144,0,-19.5676 0/0:4:4,0:4:162:0:0:0,-1.20412,-14.9667 dDocent_Contig_14475 123 . A C 54.0523 . AB=0.193548;ABP=28.2974;AC=3;AF=0.375;AN=8;AO=6;CIGAR=2X;DP=37;DPB=37;DPRA=1.72222;EPP=16.0391;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.935484;PAO=0;PQA=0;PQR=0;PRO=0;QA=209;QR=1058;RO=31;RPL=0;RPP=16.0391;RPPR=70.3259;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=70.3259;SRR=31;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:4:3,1:3:97:1:34:-2.19479,0,-7.84691 0|1:11:8,3:8:276:3:105:-6.48483,0,-21.8647 0|1:16:14,2:14:481:2:70:-1.83092,0,-38.8018 0|0:6:6,0:6:204:0:0:0,-1.80618,-18.6939 dDocent_Contig_14476 7 . C A 84.1341 . AB=0.227273;ABP=17.2236;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=46;DPB=46;DPRA=2.75;EPP=13.8677;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=182;QR=1573;RO=41;RPL=0;RPP=13.8677;RPPR=92.0407;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:14:14,0:14:539:0:0:0,-4.21442,-48.8554 0/1:22:17,5:17:653:5:182:-10.1123,0,-52.484 0/0:5:5,0:5:194:0:0:0,-1.50515,-17.8328 0/0:5:5,0:5:187:0:0:0,-1.50515,-17.1914 dDocent_Contig_14477 24 . G A 57.8988 . AB=0.139535;ABP=51.5402;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=178;DPB=178;DPRA=1.225;EPP=18.2106;EPPR=372.161;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=54.2294;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=0;PAIREDR=0.235294;PAO=0;PQA=0;PQR=0;PRO=0;QA=263;QR=6614;RO=170;RPL=0;RPP=18.2106;RPPR=372.161;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=170;SRP=372.161;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:56:56,0:56:2196:0:0:0,-16.8577,-183.935 0/0:55:54,1:54:2072:1:40:0,-12.561,-168.235 0/1:43:36,6:36:1406:6:223:-7.48885,0,-99.8901 0/0:24:24,0:24:940:0:0:0,-7.22472,-79.5737 dDocent_Contig_14479 8 . A T 1207.52 . AB=0.432692;ABP=7.10269;AC=4;AF=0.5;AN=8;AO=45;CIGAR=1X1M1X1M1X;DP=104;DPB=104;DPRA=0;EPP=100.727;EPPR=131.127;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.888889;PAIREDR=0.813559;PAO=0;PQA=0;PQR=0;PRO=0;QA=1756;QR=2304;RO=59;RPL=0;RPP=100.727;RPPR=131.127;RPR=45;RUN=1;SAF=45;SAP=100.727;SAR=0;SRF=59;SRP=131.127;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:33:24,9:24:948:9:353:-22.1978,0,-75.6965 0|1:40:18,22:18:694:22:852:-64.9582,0,-50.7479 0|1:22:10,12:10:397:12:473:-36.299,0,-29.4674 0|1:9:7,2:7:265:2:78:-4.6942,0,-21.4984 dDocent_Contig_14480 27 . G A 1469.2 . AB=0.0555556;ABP=64.7766;AC=3;AF=0.375;AN=8;AO=2;CIGAR=1M1X6M1X4M1X;DP=84;DPB=81.6429;DPRA=0;EPP=7.35324;EPPR=42.0968;GTI=0;LEN=1;MEANALT=5;MQM=60;MQMR=60;NS=4;NUMALT=4;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=71;QR=698;RO=18;RPL=0;RPP=7.35324;RPPR=42.0968;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:36:6,2,22,2,3:6:235:2,22,2,3:79,891,71,121:-71.687,-67.4067,-86.1275,0,-13.2448,-12.7088,-67.7135,-80.9495,-13.5533,-86.4341,-63.5183,-76.7547,-9.35136,-77.0614,-81.9384 0|0:8:3,3,2,0,0:3:120:3,2,0,0:119,81,0,0:-8.46614,0,-8.97919,-2.68065,-3.20114,-11.9731,-9.36923,-9.88228,-12.5752,-19.2579,-9.36923,-9.88228,-12.5752,-19.2579,-19.2579 0|1:36:9,5,20,0,2:9:343:5,20,0,2:196,809,0,81:-64.0101,-51.5889,-78.2103,0,-13.0019,-22.1132,-66.7193,-79.7154,-28.1338,-94.8483,-60.0396,-73.0358,-21.4512,-88.1685,-87.5665 1|0:4:0,1,2,0,1:0:0:1,2,0,1:39,81,0,41:-10.0756,-6.87387,-6.57284,-3.39398,-0.198003,-2.79192,-10.0756,-6.87387,-3.39398,-10.0756,-6.68907,-3.48814,0,-6.68907,-6.38804 dDocent_Contig_14483 55 . C T 39.7382 . AB=0.285714;ABP=5.80219;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X;DP=57;DPB=57;DPRA=0.42;EPP=7.35324;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=2154;RO=55;RPL=2;RPP=7.35324;RPPR=122.441;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:21:21,0:21:828:0:0:0,-6.32163,-74.8371 0/0:27:27,0:27:1063:0:0:0,-8.12781,-95.9583 0/1:7:5,2:5:181:2:82:-5.67247,0,-14.5302 0/0:2:2,0:2:82:0:0:0,-0.60206,-7.77968 dDocent_Contig_14484 20 . G A 600.472 . AB=0.345455;ABP=14.4204;AC=5;AF=0.625;AN=8;AO=23;CIGAR=1X;DP=59;DPB=59;DPRA=0;EPP=52.9542;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.944444;PAO=0;PQA=0;PQR=0;PRO=0;QA=895;QR=1404;RO=36;RPL=0;RPP=52.9542;RPPR=81.1833;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:4:0,4:0:0:4:161:-14.8753,-1.20412,0 0/1:20:17,3:17:659:3:103:-3.58749,0,-53.6048 0/1:17:7,10:7:286:10:390:-30.3328,0,-20.9973 0/1:18:12,6:12:459:6:241:-16.6466,0,-36.2284 dDocent_Contig_14485 10 . C T 836.481 . AB=0.4;ABP=8.22183;AC=5;AF=0.625;AN=8;AO=30;CIGAR=1X;DP=66;DPB=66;DPRA=0;EPP=68.1545;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1174;QR=1451;RO=36;RPL=0;RPP=68.1545;RPPR=81.1833;RPR=30;RUN=1;SAF=30;SAP=68.1545;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:14,11:14:570:11:428:-31.3454,0,-44.1159 0/1:18:10,8:10:397:8:323:-24.0198,0,-30.6654 0/1:17:12,5:12:484:5:195:-12.8047,0,-38.793 1/1:6:0,6:0:0:6:228:-20.876,-1.80618,0 dDocent_Contig_14487 15 . C T 324.377 . AB=0.333333;ABP=13.8677;AC=3;AF=0.375;AN=8;AO=15;CIGAR=1X;DP=56;DPB=56;DPRA=1.36364;EPP=35.5824;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=37.6;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.933333;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=613;QR=1646;RO=41;RPL=0;RPP=35.5824;RPPR=92.0407;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:11,13:11:448:13:532:-33.8237,0,-33.4511 0/0:11:11,0:11:442:0:0:0,-3.31133,-40.1342 0/1:11:10,1:10:394:1:41:-0.169365,0,-32.5041 0/1:10:9,1:9:362:1:40:-0.985379,0,-29.9328 dDocent_Contig_14489 20 . G A 1848.45 . AB=0.474074;ABP=3.79846;AC=3;AF=0.375;AN=8;AO=64;CIGAR=1X;DP=139;DPB=139;DPRA=11.25;EPP=141.985;EPPR=165.871;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.986667;PAO=0;PQA=0;PQR=0;PRO=0;QA=2555;QR=2950;RO=75;RPL=0;RPP=141.985;RPPR=165.871;RPR=64;RUN=1;SAF=64;SAP=141.985;SAR=0;SRF=75;SRP=165.871;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:43:20,23:20:774:23:911:-69.3468,0,-57.0275 0/1:71:36,35:36:1449:35:1402:-105.06,0,-109.286 0/1:21:15,6:15:567:6:242:-15.8357,0,-45.0342 0/0:4:4,0:4:160:0:0:0,-1.20412,-14.7829 dDocent_Contig_14490 8 . A T 260.911 . AB=0.215385;ABP=48.7448;AC=2;AF=0.25;AN=8;AO=14;CIGAR=1X;DP=84;DPB=84;DPRA=3.42105;EPP=33.4109;EPPR=155.013;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=537;QR=2684;RO=70;RPL=0;RPP=33.4109;RPPR=155.013;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=70;SRP=155.013;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:9:9,0:9:345:0:0:0,-2.70927,-31.4083 0/1:43:33,10:33:1265:10:385:-22.0625,0,-101.198 0/1:22:18,4:18:699:4:152:-7.42654,0,-56.6215 0/0:10:10,0:10:375:0:0:0,-3.0103,-34.1003 dDocent_Contig_14491 79 . C A 177.18 . AB=0.538462;ABP=3.17734;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=28;DPB=28;DPRA=2.6;EPP=18.2106;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=252;QR=746;RO=21;RPL=7;RPP=18.2106;RPPR=48.6112;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:6,7:6:216:7:252:-19.1153,0,-15.8771 0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827 0/0:4:4,0:4:136:0:0:0,-1.20412,-12.5755 0/0:10:10,0:10:358:0:0:0,-3.0103,-32.5629 dDocent_Contig_14492 10 . C A 247.083 . AB=0.305556;ABP=14.8328;AC=3;AF=0.375;AN=8;AO=12;CIGAR=1X;DP=54;DPB=54;DPRA=0;EPP=29.068;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=0.0833333;PAIREDR=0.666667;PAO=0;PQA=0;PQR=0;PRO=0;QA=483;QR=1666;RO=42;RPL=0;RPP=29.068;RPPR=94.2121;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:16,6:16:621:6:239:-15.2623,0,-49.596 0/1:5:3,2:3:120:2:81:-6.18058,0,-9.68275 0/0:18:17,1:17:684:1:41:0,-1.32397,-57.7935 0/1:9:6,3:6:241:3:122:-8.66322,0,-19.3572 dDocent_Contig_14493 27 . A G 1617.91 . AB=0.692308;ABP=28.0658;AC=4;AF=0.5;AN=8;AO=54;CIGAR=1X;DP=78;DPB=78;DPRA=0;EPP=120.27;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.240741;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2111;QR=959;RO=24;RPL=0;RPP=120.27;RPPR=55.1256;RPR=54;RUN=1;SAF=54;SAP=120.27;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:32:11,21:11:443:21:811:-63.6727,0,-30.5935 0/1:11:1,10:1:40:10:377:-30.9651,0,-0.684349 0/1:26:9,17:9:359:17:690:-54.6014,0,-24.846 0/1:9:3,6:3:117:6:233:-18.6287,0,-8.20056 dDocent_Contig_14494 58 . T C 812.336 . AB=0.56;ABP=4.57376;AC=2;AF=0.25;AN=8;AO=28;CIGAR=1X;DP=80;DPB=80;DPRA=1.66667;EPP=63.8115;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1100;QR=2064;RO=52;RPL=28;RPP=63.8115;RPPR=115.927;RPR=0;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:28:28,0:28:1112:0:0:0,-8.42884,-100.368 0/1:44:18,26:18:707:26:1021:-78.9402,0,-50.7093 0/1:6:4,2:4:163:2:79:-5.69106,0,-13.2522 0/0:2:2,0:2:82:0:0:0,-0.60206,-7.77968 dDocent_Contig_14496 25 . C T 439.758 . AB=0.475;ABP=3.22745;AC=3;AF=0.5;AN=6;AO=19;CIGAR=1X;DP=40;DPB=40;DPRA=0;EPP=44.2683;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=53.3158;MQMR=58.5238;NS=3;NUMALT=1;ODDS=0;PAIRED=0.842105;PAIREDR=0.714286;PAO=0;PQA=0;PQR=0;PRO=0;QA=726;QR=808;RO=21;RPL=0;RPP=44.2683;RPPR=48.6112;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:9,7:9:344:7:271:-16.6426,0,-26.498 0/1:5:1,4:1:38:4:152:-12.5439,0,-1.34341 0/1:19:11,8:11:426:8:303:-19.6248,0,-32.9717 ./.:.:.:.:.:.:.:. dDocent_Contig_14497 182 . C G 150.44 . AB=0.666667;ABP=5.18177;AC=1;AF=0.125;AN=8;AO=6;CIGAR=2X;DP=35;DPB=35;DPRA=1.03846;EPP=16.0391;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=209;QR=966;RO=29;RPL=6;RPP=16.0391;RPPR=65.983;RPR=0;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=65.983;SRR=29;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:9:3,6:3:105:6:209:-16.4418,0,-7.08689 0|0:3:3,0:3:104:0:0:0,-0.90309,-9.70309 0|0:14:14,0:14:455:0:0:0,-4.21442,-41.2607 0|0:9:9,0:9:302:0:0:0,-2.70927,-27.5062 dDocent_Contig_14498 11 . G A 102.676 . AB=0.15;ABP=45.5712;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X2M;DP=104;DPB=104;DPRA=1.875;EPP=16.0391;EPPR=202.786;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=240;QR=3598;RO=92;RPL=0;RPP=16.0391;RPPR=202.786;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=92;SRP=202.786;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:40:28,6,6:28:1088:6,6:243,240:-11.6111,0,-87.5793,-0.272731,-69.6137,-87.8479 0|0:45:45,0,0:45:1776:0,0:0,0:0,-13.5463,-160.069,-13.5463,-160.069,-160.069 0|0:13:13,0,0:13:502:0,0:0,0:0,-3.91339,-45.5257,-3.91339,-45.5257,-45.5257 0|0:6:6,0,0:6:232:0,0:0,0:0,-1.80618,-21.2442,-1.80618,-21.2442,-21.2442 dDocent_Contig_14499 94 . A G 141.757 . AB=0.28125;ABP=16.3106;AC=3;AF=0.375;AN=8;AO=9;CIGAR=1X;DP=41;DPB=41;DPRA=1.18519;EPP=22.5536;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.1562;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.96875;PAO=0;PQA=0;PQR=0;PRO=0;QA=313;QR=1100;RO=32;RPL=9;RPP=22.5536;RPPR=72.4974;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:7:5,2:5:171:2:70:-4.54019,0,-13.6194 0/1:9:7,2:7:236:2:70:-3.93813,0,-18.7282 0/1:16:11,5:11:382:5:173:-11.0937,0,-29.8979 0/0:9:9,0:9:311:0:0:0,-2.70927,-28.3253 dDocent_Contig_14501 158 . A T 166.941 . AB=0.307692;ABP=11.3621;AC=2;AF=0.25;AN=8;AO=8;CIGAR=1X;DP=30;DPB=30;DPRA=6.5;EPP=20.3821;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=302;QR=842;RO=22;RPL=8;RPP=20.3821;RPPR=50.7827;RPR=0;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=50.7827;SRR=22;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:11,3:11:433:3:118:-6.78809,0,-35.1102 0/1:12:7,5:7:262:5:184:-13.3034,0,-20.3234 0/0:2:2,0:2:74:0:0:0,-0.60206,-7.02486 0/0:2:2,0:2:73:0:0:0,-0.60206,-6.9313 dDocent_Contig_14502 16 . G C 251.106 . AB=0.165049;ABP=103.383;AC=3;AF=0.375;AN=8;AO=17;CIGAR=1X;DP=113;DPB=113;DPRA=3.43333;EPP=39.9253;EPPR=211.472;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=671;QR=3826;RO=96;RPL=0;RPP=39.9253;RPPR=211.472;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=96;SRP=211.472;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:32,4:32:1248:4:160:-3.94635,0,-101.745 0/1:49:44,5:44:1781:5:193:-2.98522,0,-145.748 0/1:18:10,8:10:398:8:318:-23.5646,0,-30.7599 0/0:10:10,0:10:399:0:0:0,-3.0103,-36.2677 dDocent_Contig_14503 14 . T C 296.532 . AB=0.166667;ABP=14.5915;AC=0;AF=0;AN=8;AO=2;CIGAR=1X3M1X2M1X6M2X1M1X3M;DP=58;DPB=55.1429;DPRA=3;EPP=3.0103;EPPR=89.8692;GTI=0;LEN=1;MEANALT=3;MQM=7.5;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=15;QR=1588;RO=40;RPL=0;RPP=7.35324;RPPR=89.8692;RPR=2;RUN=1;SAF=1;SAP=3.0103;SAR=1;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:25:17,0,8:17:670:0,8:0,292:-18.8546,-23.9721,-79.1151,0,-55.5148,-53.1065 0|0:17:12,0,5:12:481:0,5:0,194:-12.7149,-16.3272,-55.966,0,-40.0302,-38.525 0|0:12:7,2,2:7:278:2,2:15,68:-3.4779,-5.42999,-27.7403,0,-22.8383,-22.4461 0|0:4:4,0,0:4:159:0,0:0,0:0,-1.20412,-14.6921,-1.20412,-14.6921,-14.6921 dDocent_Contig_14504 11 . C A 2299.38 . AB=0.527607;ABP=4.08938;AC=4;AF=0.5;AN=8;AO=86;CIGAR=1X;DP=163;DPB=163;DPRA=0;EPP=189.757;EPPR=170.214;GTI=0;LEN=1;MEANALT=1;MQM=48.4767;MQMR=56.3896;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.922078;PAO=0;PQA=0;PQR=0;PRO=0;QA=3447;QR=3068;RO=77;RPL=0;RPP=189.757;RPPR=170.214;RPR=86;RUN=1;SAF=86;SAP=189.757;SAR=0;SRF=77;SRP=170.214;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:81:34,47:34:1347:47:1886:-139.419,0,-87.1791 0/1:49:30,19:30:1195:19:758:-42.8932,0,-93.0491 0/1:17:7,10:7:284:10:400:-29.1539,0,-20.8049 0/1:16:6,10:6:242:10:403:-25.8696,0,-15.2355 dDocent_Contig_14506 77 . A T 39.3535 . AB=0.416667;ABP=3.73412;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=53;DPB=53;DPRA=2.11765;EPP=20.3821;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=19;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=266;QR=1535;RO=45;RPL=8;RPP=20.3821;RPPR=100.727;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:14:14,0:14:468:0:0:0,-4.21442,-42.4404 0/0:24:21,3:21:725:3:108:0,-3.86925,-62.2157 0/1:12:7,5:7:241:5:158:-5.63414,0,-18.4142 0/0:3:3,0:3:101:0:0:0,-0.90309,-9.4236 dDocent_Contig_14507 8 . A C 167.272 . AB=0.196078;ABP=43.9277;AC=2;AF=0.25;AN=8;AO=10;CIGAR=1X;DP=69;DPB=69;DPRA=2.83333;EPP=24.725;EPPR=131.127;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.8;PAIREDR=0.694915;PAO=0;PQA=0;PQR=0;PRO=0;QA=386;QR=2207;RO=59;RPL=0;RPP=24.725;RPPR=131.127;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=59;SRP=131.127;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:11,0:11:418:0:0:0,-3.31133,-37.9711 0/1:21:18,3:18:694:3:113:-4.21734,0,-56.4726 0/1:30:23,7:23:864:7:273:-15.9071,0,-69.0478 0/0:7:7,0:7:231:0:0:0,-2.10721,-21.1083 dDocent_Contig_14508 13 . C T 227.394 . AB=0.25;ABP=24.725;AC=1;AF=0.125;AN=8;AO=10;CIGAR=1X;DP=69;DPB=69;DPRA=4.13793;EPP=24.725;EPPR=131.127;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=398;QR=2372;RO=59;RPL=0;RPP=24.725;RPPR=131.127;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=59;SRP=131.127;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:40:30,10:30:1207:10:398:-24.1372,0,-96.8606 0/0:10:10,0:10:406:0:0:0,-3.0103,-36.9004 0/0:15:15,0:15:596:0:0:0,-4.51545,-53.9752 0/0:4:4,0:4:163:0:0:0,-1.20412,-15.0584 dDocent_Contig_14509 119 . G A 534.228 . AB=0.423077;ABP=5.68288;AC=4;AF=0.5;AN=8;AO=22;CIGAR=2M1X11M;DP=52;DPB=52.1429;DPRA=0;EPP=50.7827;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=830;QR=1052;RO=28;RPL=0;RPP=50.7827;RPPR=63.8115;RPR=22;RUN=1;SAF=0;SAP=50.7827;SAR=22;SRF=0;SRP=63.8115;SRR=28;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:2:1,0,1:1:35:0,1:0,39:-3.2945,-3.59553,-6.42337,0,-3.1976,-2.89657 0|1:13:4,2,7:4:153:2,7:66,258:-19.9469,-16.37,-28.3282,0,-7.8413,-10.5029 0|1:25:13,0,12:13:486:0,12:0,456:-33.8614,-37.7748,-77.5642,0,-40.1662,-36.5538 0|1:12:10,0,2:10:378:0,2:0,77:-3.69678,-6.70708,-37.6857,0,-31.3621,-30.7601 dDocent_Contig_14511 13 . C T 171.997 . AB=0.142857;ABP=57.2971;AC=4;AF=0.5;AN=8;AO=7;CIGAR=1X3M;DP=57;DPB=57;DPRA=0;EPP=18.2106;EPPR=89.8692;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=0.975;PAO=0;PQA=0;PQR=0;PRO=0;QA=257;QR=1589;RO=40;RPL=0;RPP=18.2106;RPPR=89.8692;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:15:9,2,1,3:9:360:2,1,3:81,41,102:-5.52878,-1.54312,-30.6253,-4.84667,-27.8414,-34.2224,0,-22.9702,-26.2652,-28.7469 0|1:15:11,1,0,3:11:439:1,0,3:40,0,115:-6.11463,-6.12674,-41.9921,-9.42596,-42.2932,-45.5885,0,-32.8581,-36.1533,-35.2502 0|1:19:15,3,0,1:15:589:3,0,1:108,0,40:-4.26354,0,-47.5289,-8.77899,-48.432,-57.2356,-5.47394,-45.1364,-53.9399,-53.6389 0|1:8:5,0,3,0:5:201:0,3,0:0,119,0:-8.68694,-10.1921,-26.7598,0,-16.966,-16.0629,-10.1921,-26.7598,-16.966,-26.7598 dDocent_Contig_14512 7 . C T 41.3917 . AB=0.2;ABP=14.7363;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=61;DPB=61;DPRA=0.978261;EPP=9.52472;EPPR=128.956;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.724138;PAO=0;PQA=0;PQR=0;PRO=0;QA=111;QR=2233;RO=58;RPL=0;RPP=9.52472;RPPR=128.956;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:27:27,0:27:1038:0:0:0,-8.12781,-93.7284 0/1:15:12,3:12:460:3:111:-5.83804,0,-37.2346 0/0:15:15,0:15:579:0:0:0,-4.51545,-52.4523 0/0:4:4,0:4:156:0:0:0,-1.20412,-14.4173 dDocent_Contig_14513 30 . G A 152.612 . AB=0;ABP=0;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1X;DP=28;DPB=28;DPRA=0.333333;EPP=11.6962;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=160;QR=946;RO=24;RPL=0;RPP=11.6962;RPPR=55.1256;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:4:0,4:0:0:4:160:-14.784,-1.20412,0 ./.:.:.:.:.:.:.:. 0/0:16:16,0:16:633:0:0:0,-4.81648,-57.3025 0/0:8:8,0:8:313:0:0:0,-2.40824,-28.5321 dDocent_Contig_14514 123 . G A 299.201 . AB=0.222222;ABP=15.074;AC=6;AF=0.75;AN=8;AO=12;CIGAR=1X;DP=26;DPB=26;DPRA=0;EPP=29.068;EPPR=33.4109;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=412;QR=468;RO=14;RPL=0;RPP=29.068;RPPR=33.4109;RPR=12;RUN=1;SAF=0;SAP=29.068;SAR=12;SRF=0;SRP=33.4109;SRR=14;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:71:-6.74206,-0.60206,0 0/1:12:9,3:9:293:3:108:-6.46281,0,-23.0712 0/1:6:5,1:5:175:1:36:-1.79209,0,-14.2872 1/1:6:0,6:0:0:6:197:-18.0504,-1.80618,0 dDocent_Contig_14515 23 . G C 77.9896 . AB=0;ABP=0;AC=2;AF=0.25;AN=8;AO=2;CIGAR=1X;DP=29;DPB=29;DPRA=0.222222;EPP=7.35324;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.962963;PAO=0;PQA=0;PQR=0;PRO=0;QA=79;QR=1005;RO=27;RPL=0;RPP=7.35324;RPPR=61.6401;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:7:7,0:7:249:0:0:0,-2.10721,-22.7538 0/0:14:14,0:14:525:0:0:0,-4.21442,-47.5924 1/1:2:0,2:0:0:2:79:-7.49763,-0.60206,0 0/0:6:6,0:6:231:0:0:0,-1.80618,-21.1579 dDocent_Contig_14516 21 . G A 323.898 . AB=0.633333;ABP=7.64277;AC=4;AF=0.5;AN=8;AO=29;CIGAR=1X1M;DP=48;DPB=48;DPRA=1.66667;EPP=65.983;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1.33333;MQM=19.3448;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=561;QR=680;RO=17;RPL=0;RPP=65.983;RPPR=39.9253;RPR=29;RUN=1;SAF=0;SAP=65.983;SAR=29;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:19:2,2,15:2:79:2,15:70,297:-17.6468,-14.5825,-20.5079,0,-3.00046,-2.06447 1|1:10:0,0,10:0:0:0,10:0,205:-16.0447,-16.0447,-16.0447,-3.0103,-3.0103,0 0|1:11:7,0,4:7:281:0,4:0,59:-1.11084,-3.21805,-26.5512,0,-23.555,-22.3508 0|0:8:8,0,0:8:320:0,0:0,0:0,-2.40824,-29.1674,-2.40824,-29.1674,-29.1674 dDocent_Contig_14517 29 . T G 1794.54 . 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AB=0.4;ABP=3.87889;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=46;DPB=46;DPRA=0.833333;EPP=11.6962;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.5;PAO=0;PQA=0;PQR=0;PRO=0;QA=156;QR=1612;RO=42;RPL=0;RPP=11.6962;RPPR=94.2121;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5,0:5:195:0:0:0,-1.50515,-17.9242 0/1:10:6,4:6:227:4:156:-11.407,0,-17.7828 0/0:27:27,0:27:1036:0:0:0,-8.12781,-93.5478 0/0:4:4,0:4:154:0:0:0,-1.20412,-14.2336 dDocent_Contig_14522 66 . A G 99.1133 . AB=0;ABP=0;AC=2;AF=0.25;AN=8;AO=3;CIGAR=1X;DP=22;DPB=22;DPRA=0.473684;EPP=9.52472;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=103;QR=664;RO=19;RPL=3;RPP=9.52472;RPPR=44.2683;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:9:9,0:9:319:0:0:0,-2.70927,-29.0517 0/0:7:7,0:7:238:0:0:0,-2.10721,-21.7521 1/1:3:0,3:0:0:3:103:-9.61002,-0.90309,0 0/0:3:3,0:3:107:0:0:0,-0.90309,-9.98217 dDocent_Contig_14523 70 . G T 125.377 . AB=0.4;ABP=4.31318;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=28;DPB=28;DPRA=2.30769;EPP=16.0391;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=206;QR=755;RO=22;RPL=6;RPP=16.0391;RPPR=50.7827;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:11,0:11:380:0:0:0,-3.31133,-34.5329 0/1:15:9,6:9:312:6:206:-14.3612,0,-23.9007 ./.:.:.:.:.:.:.:. 0/0:2:2,0:2:63:0:0:0,-0.60206,-5.98344 dDocent_Contig_14524 7 . C T 189.319 . AB=0.224138;ABP=41.348;AC=1;AF=0.125;AN=8;AO=21;CIGAR=2X4M2X6M1X4M;DP=89;DPB=89;DPRA=0;EPP=48.6112;EPPR=118.098;GTI=0;LEN=1;MEANALT=2.5;MQM=13.4286;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=282;QR=2033;RO=53;RPL=0;RPP=48.6112;RPPR=118.098;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:31:21,0,8:21:796:0,8:0,109:0,-6.32163,-71.7703,-0.99643,-66.5285,-64.1203 0|0:34:24,5,3:24:937:5,3:197,42:-7.37611,0,-75.6817,-12.5845,-75.1276,-88.7417 0|0:16:5,6,5:5:183:6,5:214,70:-14.8775,0,-13.2728,-13.0049,-11.727,-26.4654 0|1:8:3,0,5:3:117:0,5:0,61:-1.88367,-2.78676,-12.5155,0,-10.0073,-8.50214 dDocent_Contig_14525 145 . T A 32.9638 . AB=0.25;ABP=7.35324;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X;DP=71;DPB=71;DPRA=0.380952;EPP=7.35324;EPPR=152.842;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=78;QR=2745;RO=69;RPL=0;RPP=7.35324;RPPR=152.842;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=152.842;SRR=69;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:28:28,0:28:1128:0:0:0,-8.42884,-101.799 0/0:31:31,0:31:1216:0:0:0,-9.33193,-109.712 0/1:8:6,2:6:244:2:78:-4.99506,0,-19.9306 0/0:4:4,0:4:157:0:0:0,-1.20412,-14.5084 dDocent_Contig_14526 15 . A T 150.844 . AB=0.047619;ABP=114.996;AC=0;AF=0;AN=8;AO=3;CIGAR=7M1X1M;DP=115;DPB=123.333;DPRA=0.875;EPP=9.52472;EPPR=187.585;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=4;NUMALT=5;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=3337;RO=85;RPL=0;RPP=9.52472;RPPR=187.585;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=85;SRP=187.585;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:36:31,0,2,1,2,0:31:1233:0,2,1,2,0:0,79,39,81,0:0,-9.33193,-110.937,-4.13946,-105.761,-105.159,-7.68121,-109.27,-104.095,-108.969,-4.10827,-105.731,-100.556,-104.065,-105.129,-9.33193,-110.937,-105.761,-109.27,-105.731,-110.937 0|0:38:28,0,6,3,0,1:28:1091:0,6,3,0,1:0,237,108,0,41:-7.09914,-15.528,-105.263,0,-89.7767,-87.9705,-10.6254,-100.338,-84.8554,-99.4349,-15.528,-105.263,-89.7767,-100.338,-105.263,-12.1315,-101.878,-86.3915,-96.953,-101.878,-101.577 0|0:25:13,2,6,0,1,2:13:509:2,6,0,1,2:79,230,0,39,81:-11.3693,-10.1062,-51.3873,0,-36.7065,-40.0728,-15.2827,-51.9893,-41.879,-57.1649,-13.2698,-49.9744,-39.8658,-55.1494,-54.8484,-8.58965,-45.3067,-35.1968,-50.4822,-48.467,-49.8802 0|0:16:13,0,2,0,0,0:13:504:0,2,0,0,0:0,74,0,0,0:-1.11322,-5.02661,-46.4696,0,-41.4025,-40.8005,-5.02661,-46.4696,-41.4025,-46.4696,-5.02661,-46.4696,-41.4025,-46.4696,-46.4696,-5.02661,-46.4696,-41.4025,-46.4696,-46.4696,-46.4696 dDocent_Contig_14529 113 . C T 1529.5 . AB=0.587156;ABP=10.2021;AC=4;AF=0.5;AN=8;AO=64;CIGAR=1X;DP=109;DPB=109;DPRA=0;EPP=141.985;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=57.9062;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.377778;PAO=0;PQA=0;PQR=0;PRO=0;QA=2133;QR=1546;RO=45;RPL=0;RPP=141.985;RPPR=100.727;RPR=64;RUN=1;SAF=0;SAP=141.985;SAR=64;SRF=0;SRP=100.727;SRR=45;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:13,13:13:449:13:453:-33.2672,0,-32.9138 0/1:56:22,34:22:756:34:1157:-87.5525,0,-51.5012 0/1:14:6,8:6:205:8:224:-16.2149,0,-14.5707 0/1:13:4,9:4:136:9:299:-23.313,0,-8.66243 dDocent_Contig_14531 106 . N T 502.924 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=16;CIGAR=2X;DP=16;DPB=16;DPRA=0;EPP=37.7539;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=541;QR=0;RO=0;RPL=0;RPP=37.7539;RPPR=0;RPR=16;RUN=1;SAF=0;SAP=37.7539;SAR=16;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:9:0,9:0:0:9:307:-27.9616,-2.70927,0 1|1:2:0,2:0:0:2:69:-6.55266,-0.60206,0 .:.:.:.:.:.:.:. 1|1:5:0,5:0:0:5:165:-15.1757,-1.50515,0 dDocent_Contig_14532 77 . G A 98.8059 . AB=0.3125;ABP=7.89611;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=21;DPB=21;DPRA=1.6;EPP=13.8677;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=194;QR=617;RO=16;RPL=5;RPP=13.8677;RPPR=37.7539;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:9,2:9:346:2:77:-3.99781,0,-28.1875 0/0:5:5,0:5:194:0:0:0,-1.50515,-17.8328 0/1:5:2,3:2:77:3:117:-9.40414,0,-5.80399 ./.:.:.:.:.:.:.:. dDocent_Contig_14533 21 . T C 1124.89 . AB=0.43617;ABP=6.33681;AC=4;AF=0.5;AN=8;AO=41;CIGAR=1X;DP=94;DPB=94;DPRA=0;EPP=92.0407;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1624;QR=2152;RO=53;RPL=0;RPP=92.0407;RPPR=118.098;RPR=41;RUN=1;SAF=41;SAP=92.0407;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:39:20,19:20:812:19:757:-56.7115,0,-61.655 0/1:33:16,17:16:648:17:669:-50.6061,0,-48.7197 0/1:15:11,4:11:448:4:163:-10.543,0,-36.1603 0/1:7:6,1:6:244:1:35:-1.39142,0,-20.2314 dDocent_Contig_14535 48 . C A 406.226 . AB=0.395349;ABP=7.10075;AC=3;AF=0.375;AN=8;AO=17;CIGAR=1X;DP=45;DPB=45;DPRA=7.16667;EPP=39.9253;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.964286;PAO=0;PQA=0;PQR=0;PRO=0;QA=643;QR=1091;RO=28;RPL=0;RPP=39.9253;RPPR=63.8115;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:11,5:11:444:5:193:-12.922,0,-35.4991 0/1:19:10,9:10:366:9:329:-24.2263,0,-27.5485 0/1:8:5,3:5:202:3:121:-8.87196,0,-16.1538 0/0:2:2,0:2:79:0:0:0,-0.60206,-7.49724 dDocent_Contig_14536 19 . C A 255.007 . 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G A 350.721 . AB=0.212121;ABP=26.7649;AC=3;AF=0.375;AN=8;AO=7;CIGAR=8M1X;DP=57;DPB=69.4444;DPRA=2.0625;EPP=18.2106;EPPR=76.8404;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.970588;PAO=0;PQA=0;PQR=0;PRO=0;QA=275;QR=1333;RO=34;RPL=0;RPP=18.2106;RPPR=76.8404;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:22:9,7,5:9:356:7,5:266,196:-19.0983,0,-27.1956,-5.68656,-13.1873,-33.4884 0|1:11:6,3,2:6:237:3,2:117,79:-7.80802,0,-18.5996,-3.11125,-13.0018,-22.0152 0|1:16:11,5,0:11:437:5,0:200,0:-13.5636,0,-34.8694,-16.875,-36.3746,-52.8508 0|0:8:8,0,0:8:303:0,0:0,0:0,-2.40824,-27.6234,-2.40824,-27.6234,-27.6234 dDocent_Contig_14539 41 . A G 249.148 . AB=0.344828;ABP=9.07545;AC=2;AF=0.25;AN=8;AO=11;CIGAR=1X;DP=52;DPB=52;DPRA=3.13333;EPP=26.8965;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=444;QR=1660;RO=41;RPL=0;RPP=26.8965;RPPR=92.0407;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:6,8:6:242:8:321:-25.0426,0,-17.9431 0/0:18:17,1:17:690:1:41:0,-1.32397,-58.3341 0/1:15:13,2:13:532:2:82:-3.26423,0,-43.7107 0/0:5:5,0:5:196:0:0:0,-1.50515,-18.0131 dDocent_Contig_14541 7 . C T 258.479 . AB=0.183908;ABP=78.5126;AC=2;AF=0.25;AN=8;AO=19;CIGAR=1X;DP=188;DPB=188;DPRA=1.40741;EPP=44.2683;EPPR=369.989;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.627219;PAO=0;PQA=0;PQR=0;PRO=0;QA=722;QR=6492;RO=169;RPL=0;RPP=44.2683;RPPR=369.989;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=169;SRP=369.989;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:48:38,10:38:1461:10:383:-20.3757,0,-117.319 0/0:65:62,3:62:2372:3:114:0,-8.93473,-203.055 0/1:39:33,6:33:1268:6:225:-8.8701,0,-102.669 0/0:36:36,0:36:1391:0:0:0,-10.8371,-125.472 dDocent_Contig_14542 141 . A T 83.8298 . AB=0.25;ABP=11.6962;AC=2;AF=0.25;AN=8;AO=4;CIGAR=1X;DP=22;DPB=22;DPRA=2.66667;EPP=11.6962;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=161;QR=691;RO=18;RPL=0;RPP=11.6962;RPPR=42.0968;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=42.0968;SRR=18;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:5:2,3:2:82:3:121:-9.77505,0,-6.27453 0/0:5:5,0:5:195:0:0:0,-1.50515,-17.9221 0/1:11:10,1:10:383:1:40:-0.684349,0,-31.5115 0/0:1:1,0:1:31:0:0:0,-0.30103,-3.09945 dDocent_Contig_14543 19 . A T 81.6851 . AB=0.5;ABP=3.0103;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=32;DPB=32;DPRA=0.692308;EPP=9.52472;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=1143;RO=29;RPL=0;RPP=9.52472;RPPR=65.983;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:6:3,3:3:123:3:122:-9.56631,0,-9.65861 0/0:3:3,0:3:110:0:0:0,-0.90309,-10.258 0/0:10:10,0:10:402:0:0:0,-3.0103,-36.5394 0/0:13:13,0:13:508:0:0:0,-3.91339,-46.0634 dDocent_Contig_14545 63 . C T 35.3827 . AB=0.333333;ABP=4.45795;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X6M;DP=90;DPB=90;DPRA=0.166667;EPP=7.35324;EPPR=155.013;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=5;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=74;QR=2749;RO=70;RPL=2;RPP=7.35324;RPPR=155.013;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=70;SRP=155.013;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:35:28,4,0,0,0,3:28:1115:4,0,0,0,3:24,0,0,0,60:0,-8.42363,-99.2401,-8.42884,-100.444,-100.487,-8.42884,-100.444,-100.487,-100.487,-8.42884,-100.444,-100.487,-100.487,-100.487,-4.68124,-96.7762,-96.813,-96.813,-96.813,-95.9099 0|0:37:32,3,0,0,0,2:32:1235:3,0,0,0,2:18,0,0,0,40:0,-9.65209,-110.365,-9.63296,-111.268,-111.302,-9.63296,-111.268,-111.302,-111.302,-9.63296,-111.268,-111.302,-111.302,-111.302,-7.1192,-108.82,-108.852,-108.852,-108.852,-108.25 0|1:6:4,0,0,0,2,0:4:159:0,0,0,2,0:0,0,0,74,0:-5.21959,-6.42371,-19.533,-6.42371,-19.533,-19.533,-6.42371,-19.533,-19.533,-19.533,0,-13.4882,-13.4882,-13.4882,-12.8862,-6.42371,-19.533,-19.533,-19.533,-13.4882,-19.533 0|0:12:6,0,3,2,0,1:6:240:0,3,2,0,1:0,33,71,0,19:-1.20261,-3.00879,-22.912,-1.75928,-21.672,-20.7689,0,-19.9493,-18.7327,-19.3472,-3.00879,-22.912,-21.672,-19.9493,-22.912,-1.86301,-21.7811,-20.5525,-18.8221,-21.7811,-21.4801 dDocent_Contig_14546 21 . G A 251.117 . AB=0.282051;ABP=19.1015;AC=2;AF=0.25;AN=8;AO=11;CIGAR=1X;DP=43;DPB=43;DPRA=9.75;EPP=26.8965;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.90625;PAO=0;PQA=0;PQR=0;PRO=0;QA=437;QR=1251;RO=32;RPL=0;RPP=26.8965;RPPR=72.4974;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:18,2:18:697:2:80:-1.57098,0,-57.0326 0/1:19:10,9:10:391:9:357:-26.7714,0,-29.8233 0/0:1:1,0:1:41:0:0:0,-0.30103,-4.09457 0/0:3:3,0:3:122:0:0:0,-0.90309,-11.3725 dDocent_Contig_14548 16 . G T 159.003 . AB=0.264706;ABP=19.3602;AC=2;AF=0.25;AN=8;AO=9;CIGAR=1X;DP=64;DPB=64;DPRA=1.13333;EPP=22.5536;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=43.1111;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.333333;PAIREDR=0.8;PAO=0;PQA=0;PQR=0;PRO=0;QA=358;QR=2129;RO=55;RPL=0;RPP=22.5536;RPPR=122.441;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:10,5:10:385:5:202:-11.1045,0,-30.482 0/1:19:15,4:15:557:4:156:-8.19368,0,-44.7308 0/0:24:24,0:24:947:0:0:0,-7.22472,-85.5271 0/0:6:6,0:6:240:0:0:0,-1.80618,-21.9754 dDocent_Contig_14550 10 . A T 99.8827 . AB=0.148148;ABP=61.0771;AC=2;AF=0.25;AN=8;AO=12;CIGAR=1X;DP=113;DPB=113;DPRA=18.5;EPP=29.068;EPPR=222.329;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=469;QR=4020;RO=101;RPL=0;RPP=29.068;RPPR=222.329;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=101;SRP=222.329;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:57:53,4:53:2109:4:152:0,-3.11192,-175.95 0/1:45:38,7:38:1509:7:276:-11.6614,0,-122.511 0/1:9:8,1:8:323:1:41:-1.3853,0,-26.7293 0/0:2:2,0:2:79:0:0:0,-0.60206,-7.49724 dDocent_Contig_14551 34 . A G 428.778 . AB=0.346939;ABP=12.9813;AC=2;AF=0.25;AN=8;AO=17;CIGAR=1X;DP=88;DPB=88;DPRA=1.25641;EPP=39.9253;EPPR=157.185;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.859155;PAO=0;PQA=0;PQR=0;PRO=0;QA=670;QR=2714;RO=71;RPL=0;RPP=39.9253;RPPR=157.185;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=71;SRP=157.185;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:25:25,0:25:960:0:0:0,-7.52575,-86.7074 0/1:35:24,11:24:923:11:430:-28.5145,0,-72.8446 0/0:14:14,0:14:522:0:0:0,-4.21442,-47.3142 0/1:14:8,6:8:309:6:240:-17.7612,0,-23.9553 dDocent_Contig_14552 37 . T C 41.8061 . AB=0.285714;ABP=5.80219;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X;DP=60;DPB=60;DPRA=0.396226;EPP=7.35324;EPPR=128.956;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.982759;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=2206;RO=58;RPL=0;RPP=7.35324;RPPR=128.956;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:7:5,2:5:193:2:81:-5.57852,0,-15.633 0/0:20:20,0:20:745:0:0:0,-6.0206,-67.3689 0/0:21:21,0:21:798:0:0:0,-6.32163,-72.1391 0/0:12:12,0:12:470:0:0:0,-3.61236,-42.6512 dDocent_Contig_14554 14 . T G 298.017 . AB=0.171429;ABP=101.471;AC=2;AF=0.25;AN=8;AO=24;CIGAR=1X;DP=240;DPB=240;DPRA=1.4058;EPP=55.1256;EPPR=472.048;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=0.898148;PAO=0;PQA=0;PQR=0;PRO=0;QA=957;QR=8603;RO=216;RPL=0;RPP=55.1256;RPPR=472.048;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=216;SRP=472.048;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:89:83,6:83:3344:6:245:0,-4.3622,-278.571 0/1:75:61,14:61:2398:14:549:-27.1721,0,-193.385 0/0:46:46,0:46:1826:0:0:0,-13.8474,-164.545 0/1:30:26,4:26:1035:4:163:-6.02753,0,-84.4104 dDocent_Contig_14555 27 . A G 395.406 . AB=0.586207;ABP=4.88226;AC=3;AF=0.375;AN=8;AO=17;CIGAR=1X;DP=38;DPB=38;DPRA=1.07407;EPP=39.9253;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.952381;PAO=0;PQA=0;PQR=0;PRO=0;QA=585;QR=778;RO=21;RPL=0;RPP=39.9253;RPPR=48.6112;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:9:9,0:9:348:0:0:0,-2.70927,-31.6783 0/1:8:4,4:4:127:4:140:-10.5367,0,-9.3326 0/1:13:5,8:5:194:8:270:-20.7164,0,-13.9169 0/1:8:3,5:3:109:5:175:-13.6855,0,-7.75749 dDocent_Contig_14556 7 . C T 3450.21 . AB=0.133333;ABP=178.176;AC=2;AF=0.25;AN=8;AO=20;CIGAR=1X1M1X;DP=207;DPB=207;DPRA=0;EPP=46.4397;EPPR=83.3548;GTI=0;LEN=1;MEANALT=3.33333;MQM=60;MQMR=60;NS=4;NUMALT=5;ODDS=5.55112e-17;PAIRED=0.7;PAIREDR=0.945946;PAO=0;PQA=0;PQR=0;PRO=0;QA=763;QR=1414;RO=37;RPL=0;RPP=46.4397;RPPR=83.3548;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:63:11,9,12,0,7,24:11:420:9,12,0,7,24:347,458,0,272,924:-75.6708,-50.4867,-82.2364,-41.4069,-47.3702,-72.2533,-78.9822,-84.9457,-75.8656,-113.441,-56.6298,-62.5932,-53.5133,-91.0889,-88.9817,-3.11647,-9.07942,0,-37.5752,-15.2224,-30.3505 1|0:64:6,16,7,0,1,34:6:229:16,7,0,1,34:613,268,0,39,1303:-136.657,-88.1527,-102.124,-116.469,-84.9471,-133.15,-138.463,-106.941,-135.257,-157.251,-135.257,-103.735,-132.051,-154.045,-153.744,-31.5222,0,-28.3164,-50.3104,-47.1042,-40.0753 0|0:57:14,7,0,3,0,31:14:533:7,0,3,0,31:269,0,116,0,1158:-90.5847,-72.7141,-114.328,-94.7991,-116.435,-138.519,-85.2701,-106.906,-128.991,-128.087,-94.7991,-116.435,-138.519,-128.991,-138.519,0,-21.6328,-43.7169,-34.1881,-43.7169,-34.385 0|0:23:6,0,1,0,0,16:6:232:0,1,0,0,16:0,37,0,0,624:-49.5066,-51.3128,-70.3687,-48.2869,-67.3425,-67.0415,-51.3128,-70.3687,-67.3425,-70.3687,-51.3128,-70.3687,-67.3425,-70.3687,-70.3687,0,-19.0707,-16.0461,-19.0707,-19.0707,-14.2543 dDocent_Contig_14557 41 . C T 36.7256 . AB=0.222222;ABP=9.04217;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X;DP=51;DPB=51;DPRA=0.642857;EPP=7.35324;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.571429;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=1982;RO=49;RPL=0;RPP=7.35324;RPPR=109.412;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:7,2:7:284:2:82:-5.07041,0,-23.2241 0/0:19:19,0:19:772:0:0:0,-5.71957,-69.7982 0/0:15:15,0:15:608:0:0:0,-4.51545,-55.0568 0/0:8:8,0:8:318:0:0:0,-2.40824,-28.9838 dDocent_Contig_14558 54 . C A 1985.62 . AB=0.57265;ABP=8.37402;AC=4;AF=0.5;AN=8;AO=67;CIGAR=1X;DP=117;DPB=117;DPRA=0;EPP=148.499;EPPR=109.412;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2666;QR=1978;RO=49;RPL=67;RPP=148.499;RPPR=109.412;RPR=0;RUN=1;SAF=67;SAP=148.499;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:56:23,33:23:937:33:1314:-101.658,0,-67.7725 0/1:33:14,18:14:560:18:711:-54.3042,0,-40.7277 0/1:16:6,10:6:244:10:398:-31.3618,0,-17.5223 0/1:12:6,6:6:237:6:243:-18.6352,0,-18.088 dDocent_Contig_14560 9 . T G 123.239 . AB=0.3;ABP=6.48466;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X2M1X;DP=52;DPB=52;DPRA=1.11111;EPP=9.52472;EPPR=98.5551;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=120;QR=1727;RO=44;RPL=0;RPP=9.52472;RPPR=98.5551;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:24:20,0,4:20:786:0,4:0,161:-7.65018,-13.6708,-78.3139,0,-65.0436,-63.8395 0|0:12:12,0,0:12:462:0,0:0,0:0,-3.61236,-41.9293,-3.61236,-41.9293,-41.9293 0|1:10:6,3,1:6:240:3,1:120,41:-8.07165,0,-18.8589,-6.49127,-16.3765,-25.9607 0|0:6:6,0,0:6:239:0,0:0,0:0,-1.80618,-21.8854,-1.80618,-21.8854,-21.8854 dDocent_Contig_14563 31 . T C 1745.98 . AB=0.330275;ABP=30.2832;AC=6;AF=0.75;AN=8;AO=36;CIGAR=1X3M;DP=109;DPB=109;DPRA=0;EPP=81.1833;EPPR=63.8115;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.805556;PAIREDR=0.821429;PAO=0;PQA=0;PQR=0;PRO=0;QA=1445;QR=1104;RO=28;RPL=0;RPP=81.1833;RPPR=63.8115;RPR=36;RUN=1;SAF=36;SAP=81.1833;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:21:5,5,11:5:192:5,11:200,438:-35.2901,-20.3194,-34.5686,-0.732448,0,-13.1718 0|1:34:10,10,14:10:401:10,14:391,567:-43.7508,-14.621,-44.6482,0,-0.903252,-28.8297 1|1:25:4,14,7:4:160:14,7:549,276:-53.4571,-9.51964,-18.4876,-31.9548,0,-43.0297 0|1:29:9,16,4:9:351:16,4:634,164:-49.4652,0,-24.0196,-38.6354,-15.2936,-66.2788 dDocent_Contig_14565 81 . A G 76.542 . AB=0.217391;ABP=18.9659;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=76;DPB=76;DPRA=2.48148;EPP=18.2106;EPPR=152.842;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=251;QR=2483;RO=69;RPL=7;RPP=18.2106;RPPR=152.842;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=69;SRP=152.842;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:29:28,1:28:1003:1:37:0,-5.03204,-86.8839 0/1:23:18,5:18:657:5:177:-9.353,0,-52.5385 0/0:15:14,1:14:490:1:37:0,-0.817621,-40.7287 0/0:9:9,0:9:333:0:0:0,-2.70927,-30.3222 dDocent_Contig_14566 71 . A G 68.6556 . AB=0.235294;ABP=13.3567;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=51;DPB=51;DPRA=1.5;EPP=11.6962;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.5;PAIREDR=0.851064;PAO=0;PQA=0;PQR=0;PRO=0;QA=148;QR=1676;RO=47;RPL=4;RPP=11.6962;RPPR=3.42611;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=25;SRP=3.42611;SRR=22;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:20:20,0:20:717:0:0:0,-6.0206,-64.8569 0/0:4:4,0:4:145:0:0:0,-1.20412,-13.4056 0/1:17:13,4:13:456:4:148:-8.56446,0,-36.2543 0/0:10:10,0:10:358:0:0:0,-3.0103,-32.5623 dDocent_Contig_14567 10 . T A 130.891 . AB=0.15493;ABP=76.4428;AC=3;AF=0.375;AN=8;AO=11;CIGAR=1X;DP=90;DPB=90;DPRA=1.24561;EPP=12.6832;EPPR=141.572;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.818182;PAIREDR=0.898734;PAO=0;PQA=0;PQR=0;PRO=0;QA=428;QR=2944;RO=79;RPL=0;RPP=26.8965;RPPR=174.557;RPR=11;RUN=1;SAF=9;SAP=12.6832;SAR=2;SRF=75;SRP=141.572;SRR=4;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:19:19,0:19:738:0:0:0,-5.71957,-66.7483 0/1:24:19,5:19:717:5:187:-9.96681,0,-57.6208 0/1:28:24,4:24:879:4:161:-6.44606,0,-70.9879 0/1:19:17,2:17:610:2:80:-1.87222,0,-49.5002 dDocent_Contig_14568 75 . T C 205.634 . AB=0.363636;ABP=8.34028;AC=4;AF=0.5;AN=8;AO=12;CIGAR=1M1X14M;DP=33;DPB=33.125;DPRA=0;EPP=29.068;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=369;QR=649;RO=19;RPL=12;RPP=29.068;RPPR=44.2683;RPR=0;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:10:6,0,4:6:206:0,4:0,126:-8.64128,-10.4475,-27.1919,0,-17.0706,-15.8665 0|1:14:11,0,3:11:378:0,3:0,77:-2.96969,-6.28102,-37.046,0,-31.0402,-30.1371 0|1:7:1,2,4:1:30:2,4:68,136:-13.8881,-8.67321,-10.4617,-3.15728,0,-4.33843 0|1:2:1,0,1:1:35:0,1:0,30:-2.39751,-2.69854,-5.57123,0,-3.1976,-2.89657 dDocent_Contig_14569 10 . T G 278.457 . AB=0.212121;ABP=50.5195;AC=2;AF=0.25;AN=8;AO=14;CIGAR=1X;DP=106;DPB=106;DPRA=1.65;EPP=33.4109;EPPR=202.786;GTI=0;LEN=1;MEANALT=1;MQM=59;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=560;QR=3527;RO=92;RPL=0;RPP=33.4109;RPPR=202.786;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=92;SRP=202.786;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:42:31,11:31:1202:11:446:-27.8527,0,-95.829 0/0:37:37,0:37:1416:0:0:0,-11.1381,-127.708 0/1:24:21,3:21:794:3:114:-3.38636,0,-64.5552 0/0:3:3,0:3:115:0:0:0,-0.90309,-10.7232 dDocent_Contig_14571 117 . G T 61.6606 . AB=0.5;ABP=3.0103;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=62;DPB=62;DPRA=0.214286;EPP=9.52472;EPPR=131.127;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=8.67362e-19;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=105;QR=2046;RO=59;RPL=0;RPP=9.52472;RPPR=131.127;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=131.127;SRR=59;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:45:45,0:45:1580:0:0:0,-13.5463,-142.486 0/0:11:11,0:11:388:0:0:0,-3.31133,-35.2571 0/1:6:3,3:3:78:3:105:-7.98991,0,-5.47093 ./.:.:.:.:.:.:.:. dDocent_Contig_14572 30 . A T 184.691 . AB=0.227273;ABP=31.4368;AC=2;AF=0.25;AN=8;AO=10;CIGAR=1X3M2X;DP=79;DPB=79;DPRA=1.25714;EPP=6.48466;EPPR=4.1599;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.602941;PAO=0;PQA=0;PQR=0;PRO=0;QA=382;QR=2534;RO=68;RPL=0;RPP=24.725;RPPR=150.67;RPR=10;RUN=1;SAF=7;SAP=6.48466;SAR=3;SRF=37;SRP=4.1599;SRR=31;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:19:18,0:18:674:0:0:0,-5.41854,-60.8838 0|0:16:16,0:16:591:0:0:0,-4.81648,-53.5216 0|1:23:17,6:17:642:6:232:-14.3242,0,-51.1879 0|1:21:17,4:17:627:4:150:-7.54284,0,-50.4404 dDocent_Contig_14573 55 . A G 890.982 . AB=0.192308;ABP=45.7716;AC=2;AF=0.25;AN=8;AO=10;CIGAR=2X;DP=63;DPB=63;DPRA=0;EPP=24.725;EPPR=55.1256;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.9;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=383;QR=935;RO=24;RPL=10;RPP=24.725;RPPR=55.1256;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:20:13,5,2:13:505:5,2:191,72:-11.7719,0,-40.0124,-9.8168,-35.6465,-50.7124 0|0:22:6,4,12:6:233:4,12:151,456:-35.5903,-25.0231,-42.9643,0,-6.7793,-15.5367 0|0:11:5,0,6:5:197:0,6:0,222:-17.0267,-18.5319,-34.7472,0,-16.5981,-14.7919 1|0:10:0,1,9:0:0:1,9:41,335:-31.1785,-27.7907,-27.4897,-3.79354,0,-1.08427 dDocent_Contig_14575 16 . G A 1213.34 . AB=0.488636;ABP=3.109;AC=3;AF=0.375;AN=8;AO=43;CIGAR=1X;DP=89;DPB=89;DPRA=29.3333;EPP=96.3836;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1685;QR=1785;RO=46;RPL=0;RPP=96.3836;RPPR=102.898;RPR=43;RUN=1;SAF=43;SAP=96.3836;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:18,7:18:678:7:283:-18.3178,0,-53.8213 0/1:55:20,35:20:786:35:1363:-106.381,0,-54.5033 0/1:8:7,1:7:280:1:39:-1.48832,0,-23.163 0/0:1:1,0:1:41:0:0:0,-0.30103,-4.09457 dDocent_Contig_14576 11 . T C 447.036 . AB=0.263158;ABP=12.2676;AC=5;AF=0.625;AN=8;AO=14;CIGAR=1X;DP=35;DPB=35;DPRA=1.33333;EPP=33.4109;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=563;QR=800;RO=21;RPL=0;RPP=33.4109;RPPR=48.6112;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:7:0,7:0:0:7:280:-25.5707,-2.10721,0 0/1:19:14,5:14:532:5:201:-12.7509,0,-42.504 0/0:7:7,0:7:268:0:0:0,-2.10721,-24.484 1/1:2:0,2:0:0:2:82:-7.77968,-0.60206,0 dDocent_Contig_14577 26 . T A 117.552 . AB=0.444444;ABP=3.25157;AC=3;AF=0.5;AN=6;AO=5;CIGAR=1X;DP=21;DPB=21;DPRA=0.454545;EPP=13.8677;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=172;QR=617;RO=16;RPL=0;RPP=13.8677;RPPR=37.7539;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:11,0:11:425:0:0:0,-3.31133,-38.5997 0/1:9:5,4:5:192:4:161:-12.166,0,-14.9376 1/1:1:0,1:0:0:1:11:-1.09999,-0.30103,0 ./.:.:.:.:.:.:.:. dDocent_Contig_14578 51 . G A 398.205 . AB=0.105263;ABP=54.4399;AC=0;AF=0;AN=8;AO=4;CIGAR=1X2M1X1M;DP=58;DPB=58;DPRA=0;EPP=11.6962;EPPR=65.983;GTI=0;LEN=1;MEANALT=2.66667;MQM=60;MQMR=60;NS=4;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=0.758621;PAO=0;PQA=0;PQR=0;PRO=0;QA=142;QR=1020;RO=29;RPL=4;RPP=11.6962;RPPR=65.983;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:20:11,0,0,9,0:11:388:0,0,9,0:0,0,322,0:-23.3037,-26.615,-58.2057,-26.615,-58.2057,-58.2057,0,-31.9461,-31.9461,-29.2368,-26.615,-58.2057,-58.2057,-31.9461,-58.2057 0|0:15:10,2,0,3,0:10:349:2,0,3,0:71,0,108,0:-5.80494,-3.03208,-30.8083,-8.81524,-31.4103,-37.1959,0,-22.5955,-28.3817,-27.4786,-8.81524,-31.4103,-37.1959,-28.3817,-37.1959 0|0:18:7,1,4,2,4:7:247:1,4,2,4:35,141,70,142:-9.46433,-8.72407,-28.5364,-0.0910382,-17.3569,-19.0003,-5.87673,-23.1424,-14.5095,-25.3879,0,-17.2665,-8.63333,-14.419,-18.91 0|0:5:1,1,0,3,0:1:36:1,0,3,0:36,0,107,0:-8.41905,-5.78183,-8.41905,-8.72008,-8.72008,-11.658,0,-1.73718e-08,-2.93742,-2.03433,-8.72008,-8.72008,-11.658,-2.93742,-11.658 dDocent_Contig_14581 18 . T C 330.734 . AB=0.342105;ABP=11.239;AC=2;AF=0.25;AN=8;AO=13;CIGAR=1X;DP=48;DPB=48;DPRA=3.8;EPP=31.2394;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=524;QR=1391;RO=35;RPL=0;RPP=31.2394;RPPR=79.0118;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:5,6:5:203:6:244:-19.0273,0,-15.3415 0/1:27:20,7:20:804:7:280:-17.4437,0,-64.5481 0/0:8:8,0:8:313:0:0:0,-2.40824,-28.5287 0/0:2:2,0:2:71:0:0:0,-0.60206,-6.74108 dDocent_Contig_14582 161 . C T 53.9171 . AB=0.666667;ABP=3.73412;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X;DP=25;DPB=25;DPRA=0.409091;EPP=7.35324;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=4.33681e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=917;RO=23;RPL=2;RPP=7.35324;RPPR=52.9542;RPR=0;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=52.9542;SRR=23;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:3:1,2:1:41:2:81:-6.78264,0,-3.19148 0/0:4:4,0:4:162:0:0:0,-1.20412,-14.9667 0/0:9:9,0:9:355:0:0:0,-2.70927,-32.3084 0/0:9:9,0:9:359:0:0:0,-2.70927,-32.6722 dDocent_Contig_14584 28 . G C 687.332 . AB=0.413043;ABP=6.03148;AC=5;AF=0.625;AN=8;AO=24;CIGAR=1X;DP=51;DPB=51;DPRA=0;EPP=55.1256;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.416667;PAIREDR=0.925926;PAO=0;PQA=0;PQR=0;PRO=0;QA=961;QR=1098;RO=27;RPL=0;RPP=55.1256;RPPR=61.6401;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:6:4,2:4:163:2:78:-5.59712,0,-13.2522 0/1:22:14,8:14:570:8:316:-22.1783,0,-45.0195 0/1:18:9,9:9:365:9:367:-27.9767,0,-27.7963 1/1:5:0,5:0:0:5:200:-18.379,-1.50515,0 dDocent_Contig_14585 12 . G A 377.131 . AB=0.555556;ABP=3.9754;AC=3;AF=0.5;AN=6;AO=20;CIGAR=1X;DP=36;DPB=36;DPRA=0;EPP=46.4397;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=30.2;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=0;PAIREDR=0.9375;PAO=0;PQA=0;PQR=0;PRO=0;QA=788;QR=639;RO=16;RPL=0;RPP=46.4397;RPPR=37.7539;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:7,11:7:277:11:432:-21.9971,0,-19.8803 0/1:12:7,5:7:284:5:196:-11.1302,0,-22.3214 0/1:6:2,4:2:78:4:160:-10.1087,0,-5.59712 ./.:.:.:.:.:.:.:. dDocent_Contig_14586 9 . G A 32.965 . AB=0.222222;ABP=9.04217;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X;DP=40;DPB=40;DPRA=0.870968;EPP=7.35324;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.894737;PAO=0;PQA=0;PQR=0;PRO=0;QA=78;QR=1461;RO=38;RPL=0;RPP=7.35324;RPPR=85.5263;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:7,2:7:272:2:78:-4.6942,0,-22.138 0/0:17:17,0:17:653:0:0:0,-5.11751,-59.1055 0/0:8:8,0:8:310:0:0:0,-2.40824,-28.2636 0/0:6:6,0:6:226:0:0:0,-1.80618,-20.7013 dDocent_Contig_14587 51 . A G 376.832 . AB=0.26087;ABP=37.2818;AC=4;AF=0.5;AN=8;AO=18;CIGAR=1X2M1X;DP=69;DPB=69;DPRA=0;EPP=42.0968;EPPR=111.584;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=0.555556;PAIREDR=0.8;PAO=0;PQA=0;PQR=0;PRO=0;QA=716;QR=1980;RO=50;RPL=18;RPP=42.0968;RPPR=111.584;RPR=0;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:20:13,6:13:517:6:238:-15.6661,0,-40.7488 0|1:24:20,4:20:780:4:160:-7.55908,0,-63.2884 0|1:19:14,5:14:565:5:200:-12.6606,0,-45.4741 0|1:6:3,3:3:118:3:118:-9.1954,0,-9.19602 dDocent_Contig_14588 58 . G A 3342.6 . AB=0.732877;ABP=71.7835;AC=4;AF=0.5;AN=8;AO=107;CIGAR=1X;DP=146;DPB=146;DPRA=0;EPP=235.358;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.869159;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4254;QR=1548;RO=39;RPL=107;RPP=235.358;RPPR=87.6977;RPR=0;RUN=1;SAF=107;SAP=235.358;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:60:15,45:15:601:45:1795:-143.703,0,-36.3677 0/1:48:16,32:16:635:32:1262:-99.3904,0,-43.0347 0/1:22:2,20:2:74:20:801:-65.7844,0,-0.403107 0/1:16:6,10:6:238:10:396:-31.18,0,-16.9771 dDocent_Contig_14589 17 . A T 1477.66 . AB=0.509804;ABP=3.09546;AC=4;AF=0.5;AN=8;AO=52;CIGAR=1X;DP=102;DPB=102;DPRA=0;EPP=115.927;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=56.3077;MQMR=58.44;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=0.769231;PAIREDR=0.84;PAO=0;PQA=0;PQR=0;PRO=0;QA=2069;QR=1969;RO=50;RPL=0;RPP=115.927;RPPR=111.584;RPR=52;RUN=1;SAF=52;SAP=115.927;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:37:20,17:20:787:17:665:-48.2518,0,-57.4452 0/1:19:6,13:6:240:13:524:-41.6316,0,-16.2556 0/1:26:11,15:11:423:15:597:-45.5863,0,-30.592 0/1:20:13,7:13:519:7:283:-19.6937,0,-41.0331 dDocent_Contig_14590 48 . C T 808.045 . AB=0.488372;ABP=3.0608;AC=6;AF=0.75;AN=8;AO=27;CIGAR=1X;DP=49;DPB=49;DPRA=0;EPP=61.6401;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1063;QR=863;RO=22;RPL=0;RPP=61.6401;RPPR=50.7827;RPR=27;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:13,3:13:513:3:116:-5.9998,0,-41.699 1/1:2:0,2:0:0:2:81:-7.68573,-0.60206,0 0/1:27:9,18:9:350:18:708:-55.9159,0,-23.728 1/1:4:0,4:0:0:4:158:-14.6007,-1.20412,0 dDocent_Contig_14591 139 . T G 538.866 . AB=0.0666667;ABP=51.9408;AC=0;AF=0;AN=8;AO=2;CIGAR=8M1X20M;DP=78;DPB=70.8621;DPRA=7.5;EPP=7.35324;EPPR=109.412;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=21;QR=1900;RO=49;RPL=0;RPP=7.35324;RPPR=109.412;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=109.412;SRR=49;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:40:28,12,0,0:28:1077:12,0,0:406,0,0:-24.8223,0,-85.1839,-33.2512,-88.7963,-121.695,-33.2512,-88.7963,-121.695,-121.695 0|0:30:20,0,8,2:20:783:0,8,2:0,251,21:-14.316,-20.3366,-84.7968,0,-64.6409,-62.2326,-19.0903,-83.5265,-63.3789,-82.9244 0|0:4:1,0,3,0:1:40:0,3,0:0,84,0:-6.63283,-6.93386,-10.2589,0,-3.69465,-2.79156,-6.93386,-10.2589,-3.69465,-10.2589 0|0:4:0,0,4,0:0:0:0,4,0:0,146,0:-13.496,-13.496,-13.496,-1.20412,-1.20412,0,-13.496,-13.496,-1.20412,-13.496 dDocent_Contig_14592 10 . C A 45.7564 . AB=0.4;ABP=3.44459;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X;DP=35;DPB=35;DPRA=0.5;EPP=7.35324;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.484848;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=1308;RO=33;RPL=0;RPP=7.35324;RPPR=74.6689;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:13:13,0:13:511:0:0:0,-3.91339,-46.3364 0/0:4:4,0:4:164:0:0:0,-1.20412,-15.1499 0/0:13:13,0:13:510:0:0:0,-3.91339,-46.2401 0/1:5:3,2:3:123:2:82:-6.27453,0,-9.95964 dDocent_Contig_14593 12 . T A 130.407 . AB=0.357143;ABP=5.49198;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=40;DPB=40;DPRA=1.61538;EPP=13.8677;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=203;QR=1307;RO=35;RPL=0;RPP=13.8677;RPPR=79.0118;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:9,5:9:344:5:203:-14.4386,0,-27.1017 0/0:12:12,0:12:442:0:0:0,-3.61236,-40.122 0/0:7:7,0:7:269:0:0:0,-2.10721,-24.5733 0/0:7:7,0:7:252:0:0:0,-2.10721,-23.0199 dDocent_Contig_14596 89 . A G 41.84 . AB=0.214286;ABP=12.937;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=52;DPB=52;DPRA=1.10526;EPP=9.52472;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.979592;PAO=0;PQA=0;PQR=0;PRO=0;QA=105;QR=1673;RO=49;RPL=3;RPP=9.52472;RPPR=109.412;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:11,3:11:383:3:105:-5.58174,0,-30.5906 0/0:30:30,0:30:1024:0:0:0,-9.0309,-92.4671 0/0:5:5,0:5:162:0:0:0,-1.50515,-14.8995 0/0:3:3,0:3:104:0:0:0,-0.90309,-9.70309 dDocent_Contig_14598 55 . A T 198.968 . AB=0.264706;ABP=19.3602;AC=2;AF=0.25;AN=8;AO=9;CIGAR=1X;DP=53;DPB=53;DPRA=1.78947;EPP=22.5536;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=364;QR=1760;RO=44;RPL=9;RPP=22.5536;RPPR=98.5551;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:17:17,0:17:671:0:0:0,-5.11751,-60.72 0/1:25:21,4:21:847:4:163:-7.53268,0,-69.0173 0/1:9:4,5:4:162:5:201:-15.7618,0,-12.2577 0/0:2:2,0:2:80:0:0:0,-0.60206,-7.59157 dDocent_Contig_14599 23 . T G 60.4882 . AB=0.181818;ABP=22.3561;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=38;DPB=38;DPRA=2.75;EPP=11.6962;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=45;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=162;QR=1365;RO=34;RPL=0;RPP=11.6962;RPPR=76.8404;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:14:14,0:14:568:0:0:0,-4.21442,-51.4611 0/1:22:18,4:18:715:4:162:-7.87237,0,-58.05 ./.:.:.:.:.:.:.:. 0/0:2:2,0:2:82:0:0:0,-0.60206,-7.77968 dDocent_Contig_14600 12 . T C 942.207 . AB=0.514706;ABP=3.13803;AC=4;AF=0.5;AN=8;AO=35;CIGAR=1X;DP=68;DPB=68;DPRA=0;EPP=79.0118;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=54.9429;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.742857;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1387;QR=1320;RO=33;RPL=0;RPP=79.0118;RPPR=74.6689;RPR=35;RUN=1;SAF=35;SAP=79.0118;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:3,7:3:122:7:265:-20.9345,0,-8.36219 0/1:22:10,12:10:401:12:481:-33.161,0,-29.8266 0/1:27:13,14:13:516:14:571:-43.5849,0,-38.6557 0/1:9:7,2:7:281:2:70:-3.93695,0,-22.9529 dDocent_Contig_14601 120 . T C 118.761 . AB=0.269231;ABP=15.0369;AC=2;AF=0.25;AN=8;AO=8;CIGAR=1X;DP=55;DPB=55;DPRA=8.83333;EPP=20.3821;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=284;QR=1682;RO=47;RPL=0;RPP=20.3821;RPPR=105.07;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=105.07;SRR=47;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:18,3:18:642:3:106:-3.56747,0,-51.788 0/0:27:26,1:26:932:1:36:0,-4.52953,-80.5997 0/1:5:1,4:1:36:4:142:-11.6241,0,-2.09312 0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672 dDocent_Contig_14603 27 . G A 133.528 . AB=0.26087;ABP=14.4341;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=83;DPB=83;DPRA=1.15;EPP=16.0391;EPPR=170.214;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=240;QR=3059;RO=77;RPL=0;RPP=16.0391;RPPR=170.214;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=77;SRP=170.214;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:24:24,0:24:955:0:0:0,-7.22472,-86.2461 0/0:30:30,0:30:1175:0:0:0,-9.0309,-106.028 0/1:23:17,6:17:689:6:240:-15.0518,0,-55.4146 0/0:6:6,0:6:240:0:0:0,-1.80618,-21.9757 dDocent_Contig_14604 12 . C T 464.315 . AB=0.404762;ABP=6.31921;AC=2;AF=0.25;AN=8;AO=18;CIGAR=1X;DP=66;DPB=66;DPRA=4.06667;EPP=42.0968;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=727;QR=1927;RO=48;RPL=0;RPP=42.0968;RPPR=107.241;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:20,10:20:807:10:404:-27.6892,0,-63.9142 0/0:19:18,1:18:717:1:41:0,-1.625,-60.7545 0/1:12:5,7:5:200:7:282:-22.1402,0,-14.7678 0/0:5:5,0:5:203:0:0:0,-1.50515,-18.6528 dDocent_Contig_14605 33 . T C 404.554 . AB=0.257143;ABP=38.8706;AC=3;AF=0.375;AN=8;AO=19;CIGAR=1X;DP=88;DPB=88;DPRA=0;EPP=44.2683;EPPR=152.842;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.855072;PAO=0;PQA=0;PQR=0;PRO=0;QA=772;QR=2642;RO=69;RPL=0;RPP=44.2683;RPPR=152.842;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=69;SRP=152.842;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:18:17,1:17:663:1:41:0,-1.32397,-55.9088 0/1:22:15,7:15:579:7:284:-19.3111,0,-45.826 0/1:26:20,6:20:773:6:243:-14.4208,0,-62.0639 0/1:22:17,5:17:627:5:204:-12.1214,0,-50.1359 dDocent_Contig_14606 18 . G T 78.4924 . AB=0.222222;ABP=15.074;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=164;DPB=164;DPRA=0.369863;EPP=11.6962;EPPR=350.446;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.975;PAO=0;PQA=0;PQR=0;PRO=0;QA=162;QR=6371;RO=160;RPL=0;RPP=11.6962;RPPR=350.446;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=160;SRP=350.446;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:47:47,0:47:1877:0:0:0,-14.1484,-169.137 0/0:86:86,0:86:3432:0:0:0,-25.8886,-308.926 0/0:13:13,0:13:522:0:0:0,-3.91339,-47.3266 0/1:18:14,4:14:540:4:162:-9.54821,0,-43.517 dDocent_Contig_14607 7 . C G 167.646 . AB=0.301887;ABP=21.0786;AC=1;AF=0.125;AN=8;AO=19;CIGAR=1X3M1X1M1X3M3X1M4X;DP=65;DPB=65;DPRA=0;EPP=44.2683;EPPR=52.9542;GTI=0;LEN=1;MEANALT=2.75;MQM=12;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=719;QR=900;RO=23;RPL=0;RPP=44.2683;RPPR=52.9542;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:19:0,13,6:0:0:13,6:492,108:-16.5543,-6.46194,-2.54855,-10.2331,0,-8.42688 0|0:24:13,1,9:13:511:1,9:39,135:-3.02716,-6.165,-48.0339,0,-41.3834,-39.4341 0|0:12:8,3,1:8:315:3,1:114,15:0,-0.0747447,-25.3286,-1.62379,-25.4777,-27.4361 0|0:10:2,2,4:2:74:2,4:74,60:-2.50882,-1.56481,-7.0693,0,-4.62296,-4.91452 dDocent_Contig_14608 154 . T C 66.5493 . AB=0.333333;ABP=5.18177;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=18;DPB=18;DPRA=2;EPP=9.52472;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.8;PAO=0;PQA=0;PQR=0;PRO=0;QA=120;QR=503;RO=15;RPL=0;RPP=9.52472;RPPR=35.5824;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=35.5824;SRR=15;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:6:6,0:6:197:0:0:0,-1.80618,-18.0528 0/0:3:3,0:3:100:0:0:0,-0.90309,-9.33037 0/1:9:6,3:6:206:3:120:-8.47863,0,-16.1675 ./.:.:.:.:.:.:.:. dDocent_Contig_14609 109 . A C 76.3446 . AB=0.333333;ABP=5.9056;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=21;DPB=21;DPRA=4;EPP=11.6962;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=140;QR=583;RO=17;RPL=0;RPP=11.6962;RPPR=39.9253;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=39.9253;SRR=17;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:2:2,0:2:70:0:0:0,-0.60206,-6.6474 0/1:12:8,4:8:275:4:140:-9.33257,0,-21.4725 0/0:6:6,0:6:203:0:0:0,-1.80618,-18.6021 0/0:1:1,0:1:35:0:0:0,-0.30103,-3.49863 dDocent_Contig_14610 47 . C T 427.477 . AB=0.435897;ABP=4.40227;AC=4;AF=0.5;AN=8;AO=17;CIGAR=1X;DP=39;DPB=39;DPRA=0;EPP=39.9253;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.941176;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=671;QR=891;RO=22;RPL=0;RPP=39.9253;RPPR=50.7827;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:8,3:8:326:3:108:-6.75936,0,-26.3983 0/1:11:6,5:6:241:5:203:-15.3417,0,-18.755 0/1:10:6,4:6:245:4:161:-11.865,0,-19.4192 0/1:7:2,5:2:79:5:199:-16.1795,0,-5.39042 dDocent_Contig_14611 15 . C T 249.882 . AB=0.5;ABP=3.0103;AC=2;AF=0.25;AN=8;AO=9;CIGAR=1X;DP=26;DPB=26;DPRA=2.25;EPP=22.5536;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.888889;PAIREDR=0.823529;PAO=0;PQA=0;PQR=0;PRO=0;QA=367;QR=667;RO=17;RPL=0;RPP=22.5536;RPPR=39.9253;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:7:7,0:7:277:0:0:0,-2.10721,-25.2969 0/0:1:1,0:1:39:0:0:0,-0.30103,-3.89656 0/1:10:3,7:3:117:7:285:-23.0141,0,-7.89991 0/1:8:6,2:6:234:2:82:-5.37144,0,-19.0207 dDocent_Contig_14612 87 . C T 39.6333 . AB=0.157895;ABP=41.6397;AC=2;AF=0.25;AN=8;AO=8;CIGAR=1X;DP=66;DPB=66;DPRA=21.6667;EPP=20.3821;EPPR=128.956;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=273;QR=2013;RO=58;RPL=8;RPP=20.3821;RPPR=128.956;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:27:25,2:25:867:2:72:0,-1.29109,-71.5103 0/1:24:20,4:20:698:4:131:-4.88922,0,-55.92 0/1:14:12,2:12:413:2:70:-2.43298,0,-33.2863 0/0:1:1,0:1:35:0:0:0,-0.30103,-3.49863 dDocent_Contig_14613 209 . N G 152.012 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=157;QR=0;RO=0;RPL=4;RPP=11.6962;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:1:0,1:0:0:1:39:-3.89656,-0.30103,0 1/1:3:0,3:0:0:3:118:-11.0022,-0.90309,0 ./.:.:.:.:.:.:.:. dDocent_Contig_14614 55 . G A 387.099 . AB=0.355556;ABP=11.1654;AC=3;AF=0.375;AN=8;AO=16;CIGAR=1X;DP=46;DPB=46;DPRA=15;EPP=37.7539;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.8125;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=628;QR=1192;RO=30;RPL=16;RPP=37.7539;RPPR=68.1545;RPR=0;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:13,7:13:510:7:284:-19.9132,0,-40.2169 0/1:21:15,6:15:600:6:222:-14.012,0,-48.0161 0/1:4:1,3:1:41:3:122:-10.1684,0,-2.89045 0/0:1:1,0:1:41:0:0:0,-0.30103,-4.09457 dDocent_Contig_14616 65 . T C 297.54 . AB=0.333333;ABP=14.5915;AC=3;AF=0.375;AN=8;AO=16;CIGAR=1X;DP=75;DPB=75;DPRA=0.592593;EPP=37.7539;EPPR=131.127;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.949153;PAO=0;PQA=0;PQR=0;PRO=0;QA=540;QR=1852;RO=59;RPL=16;RPP=37.7539;RPPR=131.127;RPR=0;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=59;SRP=131.127;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:6,8:6:175:8:269:-20.3234,0,-11.823 0/0:27:27,0:27:832:0:0:0,-8.12781,-75.1677 0/1:28:22,6:22:712:6:202:-10.0819,0,-55.951 0/1:6:4,2:4:133:2:69:-4.74648,0,-10.4928 dDocent_Contig_14617 14 . C A 223.456 . AB=0.222222;ABP=27.1378;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1M1X1M1X15M;DP=121;DPB=121.158;DPRA=1.38462;EPP=20.3821;EPPR=194.1;GTI=0;LEN=1;MEANALT=5;MQM=60;MQMR=60;NS=4;NUMALT=6;ODDS=1.38778e-17;PAIRED=0;PAIREDR=0.590909;PAO=0;PQA=0;PQR=0;PRO=0;QA=312;QR=3481;RO=88;RPL=0;RPP=20.3821;RPPR=194.1;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=88;SRP=194.1;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:36:22,1,8,3,0,0,0:22:868:1,8,3,0,0,0:40,312,102,0,0,0:-19.0617,-22.3862,-93.527,0,-68.1816,-69.0693,-17.4191,-85.5613,-63.2116,-87.9538,-25.6844,-93.828,-71.4775,-88.8569,-97.1236,-25.6844,-93.828,-71.4775,-88.8569,-97.1236,-97.1236,-25.6844,-93.828,-71.4775,-88.8569,-97.1236,-97.1236,-97.1236 0|0:33:22,2,0,0,3,4,0:22:867:2,0,0,3,4,0:70,0,0,88,161,0:-6.68179,-7.61067,-78.3782,-13.3044,-78.9803,-84.6704,-13.3044,-78.9803,-84.6704,-84.6704,-6.31169,-71.9788,-77.6681,-77.6681,-76.765,0,-65.7074,-71.3974,-71.3974,-64.396,-70.1933,-13.3044,-78.9803,-84.6704,-84.6704,-77.6681,-71.3974,-84.6704 0|0:36:31,0,0,0,0,0,2:31:1231:0,0,0,0,0,2:0,0,0,0,0,81:0,-9.33193,-110.746,-9.33193,-110.746,-110.746,-9.33193,-110.746,-110.746,-110.746,-9.33193,-110.746,-110.746,-110.746,-110.746,-9.33193,-110.746,-110.746,-110.746,-110.746,-110.746,-2.59298,-104.066,-104.066,-104.066,-104.066,-104.066,-103.464 0|0:16:13,0,0,0,0,0,0:13:515:0,0,0,0,0,0:0,0,0,0,0,0:0,-3.91339,-46.4641,-3.91339,-46.4641,-46.4641,-3.91339,-46.4641,-46.4641,-46.4641,-3.91339,-46.4641,-46.4641,-46.4641,-46.4641,-3.91339,-46.4641,-46.4641,-46.4641,-46.4641,-46.4641,-3.91339,-46.4641,-46.4641,-46.4641,-46.4641,-46.4641,-46.4641 dDocent_Contig_14618 181 . G A 310.452 . AB=0.352941;ABP=9.39698;AC=2;AF=0.25;AN=8;AO=12;CIGAR=1X;DP=58;DPB=58;DPRA=1.41667;EPP=29.068;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=488;QR=1827;RO=46;RPL=12;RPP=29.068;RPPR=102.898;RPR=0;RUN=1;SAF=0;SAP=29.068;SAR=12;SRF=0;SRP=102.898;SRR=46;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:3:3,0:3:122:0:0:0,-0.90309,-11.3725 0/0:21:21,0:21:822:0:0:0,-6.32163,-74.2786 0/1:22:18,4:18:722:4:163:-8.43577,0,-58.6813 0/1:12:4,8:4:161:8:325:-26.0073,0,-11.2629 dDocent_Contig_14619 47 . A G 555.987 . AB=0.383333;ABP=10.1038;AC=4;AF=0.5;AN=8;AO=23;CIGAR=1X;DP=60;DPB=60;DPRA=0;EPP=52.9542;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=884;QR=1495;RO=37;RPL=0;RPP=52.9542;RPPR=83.3548;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:16,3:16:642:3:122:-5.65292,0,-52.3931 0/1:22:14,8:14:568:8:291:-19.9055,0,-44.8393 0/1:14:6,8:6:244:8:308:-23.8578,0,-18.1244 0/1:5:1,4:1:41:4:163:-13.5533,0,-2.58942 dDocent_Contig_14621 62 . T C 794.897 . 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T G 1788.21 . 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AB=0.2;ABP=26.4622;AC=2;AF=0.25;AN=8;AO=6;CIGAR=1X;DP=39;DPB=39;DPRA=3.33333;EPP=16.0391;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.833333;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=210;QR=1145;RO=33;RPL=0;RPP=16.0391;RPPR=74.6689;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=74.6689;SRR=33;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5,0:5:171:0:0:0,-1.50515,-15.7262 0/1:12:8,4:8:279:4:140:-9.33257,0,-21.8366 0/1:18:16,2:16:558:2:70:-1.22886,0,-45.1308 0/0:4:4,0:4:137:0:0:0,-1.20412,-12.6681 dDocent_Contig_14646 27 . C T 440.512 . AB=0.25;ABP=48.6112;AC=3;AF=0.375;AN=8;AO=21;CIGAR=1X3M;DP=103;DPB=103;DPRA=1.47368;EPP=48.6112;EPPR=170.214;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.571429;PAIREDR=0.753247;PAO=0;PQA=0;PQR=0;PRO=0;QA=798;QR=3010;RO=77;RPL=0;RPP=48.6112;RPPR=170.214;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=77;SRP=170.214;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:38:31,2,5:31:1229:2,5:73,199:-7.07683,-10.4543,-111.01,0,-95.2269,-99.6837 0|1:23:9,0,14:9:360:0,14:0,519:-40.1221,-42.8313,-72.4977,0,-30.0545,-25.8401 0|1:23:18,3,2:18:696:3,2:95,80:-2.17293,0,-56.2474,-0.968066,-50.559,-57.5883 0|0:19:19,0,0:19:725:0,0:0,0:0,-5.71957,-65.568,-5.71957,-65.568,-65.568 dDocent_Contig_14647 19 . T C 916.574 . AB=0.5;ABP=3.0103;AC=5;AF=0.625;AN=8;AO=31;CIGAR=1X;DP=52;DPB=52;DPRA=0;EPP=70.3259;EPPR=40.3389;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=57.9048;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.952381;PAO=0;PQA=0;PQR=0;PRO=0;QA=1203;QR=828;RO=21;RPL=0;RPP=70.3259;RPPR=48.6112;RPR=31;RUN=1;SAF=31;SAP=70.3259;SAR=0;SRF=20;SRP=40.3389;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:12,15:12:468:15:593:-45.5752,0,-34.3368 0/1:4:2,2:2:81:2:82:-6.57556,0,-6.48161 0/1:11:7,4:7:279:4:145:-10.0891,0,-20.2482 1/1:10:0,10:0:0:10:383:-34.8155,-3.0103,0 dDocent_Contig_14649 24 . G T 614.055 . 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AB=0.166667;ABP=14.5915;AC=0;AF=0;AN=8;AO=2;CIGAR=13M1X14M;DP=86;DPB=85.5;DPRA=0;EPP=7.35324;EPPR=87.6977;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=4;NUMALT=6;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=68;QR=1322;RO=39;RPL=2;RPP=7.35324;RPPR=87.6977;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:29:16,0,2,7,1,0,0:16:543:0,2,7,1,0,0:0,82,276,40,0,0:-17.9136,-22.73,-66.746,-15.9556,-59.9739,-59.3718,0,-44.0257,-37.2509,-41.9185,-19.4329,-63.4494,-56.6769,-40.728,-63.1483,-22.73,-66.746,-59.9739,-44.0257,-63.4494,-66.746,-22.73,-66.746,-59.9739,-44.0257,-63.4494,-66.746,-66.746 0|0:38:16,3,7,1,2,5,0:16:549:3,7,1,2,5,0:113,283,30,76,196,0:-18.5377,-14.0923,-57.7585,0,-35.3153,-42.471,-20.9584,-56.2644,-42.181,-65.2244,-17.119,-52.4267,-38.3424,-59.2909,-61.086,-7.22699,-42.5373,-28.4511,-49.4022,-45.5641,-50.2942,-23.3542,-58.6616,-44.5782,-65.5255,-61.6881,-51.7994,-67.9227 0|0:12:3,0,1,1,0,5,2:3:104:0,1,1,0,5,2:0,41,34,0,196,68:-15.2341,-16.1371,-24.5831,-12.7489,-21.1953,-20.8943,-13.3837,-21.8277,-18.4399,-21.5267,-16.1371,-24.5831,-21.1953,-21.8277,-24.5831,0,-8.44879,-5.05525,-5.69293,-8.44879,-6.94364,-10.6316,-19.073,-15.685,-16.3188,-19.073,-2.93798,-18.4709 0|0:7:4,0,0,3,0,0,0:4:126:0,0,3,0,0,0:0,0,119,0,0,0:-8.9878,-10.1919,-20.2787,-10.1919,-20.2787,-20.2787,0,-10.4482,-10.4482,-9.54507,-10.1919,-20.2787,-20.2787,-10.4482,-20.2787,-10.1919,-20.2787,-20.2787,-10.4482,-20.2787,-20.2787,-10.1919,-20.2787,-20.2787,-10.4482,-20.2787,-20.2787,-20.2787 dDocent_Contig_14652 81 . C A 44.6797 . AB=0.190476;ABP=20.4855;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1X;DP=36;DPB=36;DPRA=0.7;EPP=11.6962;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=144;QR=1118;RO=32;RPL=4;RPP=11.6962;RPPR=72.4974;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:3:1,2:1:37:2:72:-5.93363,0,-2.79474 ./.:.:.:.:.:.:.:. 0/1:18:16,2:16:547:2:72:-1.41818,0,-44.1314 0/0:15:15,0:15:534:0:0:0,-4.51545,-48.3943 dDocent_Contig_14653 55 . C G 666.067 . AB=0.125;ABP=12.7819;AC=3;AF=0.5;AN=6;AO=21;CIGAR=1X;DP=46;DPB=46;DPRA=0;EPP=48.6112;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.88;PAO=0;PQA=0;PQR=0;PRO=0;QA=808;QR=988;RO=25;RPL=21;RPP=48.6112;RPPR=57.2971;RPR=0;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:19:18,1:18:708:1:34:0,-2.32066,-60.6497 1/1:19:0,19:0:0:19:734:-66.3779,-5.71957,0 0/1:8:7,1:7:280:1:40:-1.58744,0,-23.1629 ./.:.:.:.:.:.:.:. dDocent_Contig_14654 170 . T A 47.8329 . AB=0.5;ABP=3.0103;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X;DP=24;DPB=24;DPRA=0.6;EPP=7.35324;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=870;RO=22;RPL=2;RPP=7.35324;RPPR=50.7827;RPR=0;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=50.7827;SRR=22;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:7:7,0:7:279:0:0:0,-2.10721,-25.4803 0/0:12:12,0:12:483:0:0:0,-3.61236,-43.8207 0/0:1:1,0:1:41:0:0:0,-0.30103,-4.09457 0/1:4:2,2:2:67:2:81:-6.48161,0,-5.15657 dDocent_Contig_14655 10 . C T 363.638 . AB=0.357143;ABP=10.4553;AC=3;AF=0.375;AN=8;AO=16;CIGAR=1X3M1X;DP=60;DPB=60;DPRA=0;EPP=37.7539;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.953488;PAO=0;PQA=0;PQR=0;PRO=0;QA=634;QR=1701;RO=43;RPL=0;RPP=37.7539;RPPR=96.3836;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:20:9,11:9:350:11:433:-33.3046,0,-25.8378 0|0:18:17,1:17:674:1:41:0,-1.32397,-56.8975 0|1:11:8,2:8:320:2:80:-4.17533,0,-25.7496 0|1:11:9,2:9:357:2:80:-4.28046,0,-29.1817 dDocent_Contig_14656 138 . C T 247.579 . AB=0.25;ABP=5.18177;AC=3;AF=0.375;AN=8;AO=9;CIGAR=1X;DP=32;DPB=32;DPRA=0.6;EPP=22.5536;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=296;QR=735;RO=23;RPL=0;RPP=22.5536;RPPR=52.9542;RPR=9;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=52.9542;SRR=23;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:8:0,8:0:0:8:261:-23.8094,-2.40824,0 0/0:12:12,0:12:398:0:0:0,-3.61236,-36.141 0/0:8:8,0:8:270:0:0:0,-2.40824,-24.6296 0/1:4:3,1:3:67:1:35:-2.29451,0,-5.0486 dDocent_Contig_14657 107 . N A 352.705 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=11;CIGAR=1X;DP=11;DPB=11;DPRA=0;EPP=26.8965;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=381;QR=0;RO=0;RPL=0;RPP=26.8965;RPPR=0;RPR=11;RUN=1;SAF=0;SAP=26.8965;SAR=11;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:4:0,4:0:0:4:138:-12.7604,-1.20412,0 ./.:.:.:.:.:.:.:. 1/1:7:0,7:0:0:7:243:-22.2089,-2.10721,0 dDocent_Contig_14658 12 . T C 401.904 . AB=0.295082;ABP=25.259;AC=4;AF=0.5;AN=8;AO=18;CIGAR=2X;DP=61;DPB=61;DPRA=0;EPP=42.0968;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=711;QR=1716;RO=43;RPL=0;RPP=42.0968;RPPR=96.3836;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:13:8,5:8:319:5:203:-14.7395,0,-25.1635 0|1:24:17,7:17:685:7:279:-18.2564,0,-54.7554 0|1:16:11,5:11:431:5:189:-12.5524,0,-34.3259 0|1:8:7,1:7:281:1:40:-1.58744,0,-23.2543 dDocent_Contig_14659 130 . A G 281.59 . AB=0.388889;ABP=4.9405;AC=2;AF=0.25;AN=8;AO=7;CIGAR=1M2D1M1X14M;DP=31;DPB=30.5789;DPRA=1.38462;EPP=18.2106;EPPR=37.7539;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.428571;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=235;QR=605;RO=16;RPL=0;RPP=18.2106;RPPR=37.7539;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=37.7539;SRR=16;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:3:0,1,1:0:0:1,1:35,35:-5.70212,-2.85272,-2.55169,-2.85272,0,-2.55169 0|1:15:7,6,2:7:265:6,2:200,49:-14.1453,0,-20.0236,-12.4679,-18.0528,-33.6162 0|0:9:9,0,0:9:340:0,0:0,0:0,-2.70927,-30.9564,-2.70927,-30.9564,-30.9564 0|0:4:0,0,4:0:0:0,4:0,126:-11.652,-11.652,-11.652,-1.20412,-1.20412,0 dDocent_Contig_14660 1 . N G 74.0438 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=78;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:78:-7.4033,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_14662 12 . A G 732.772 . AB=0.473684;ABP=3.23888;AC=4;AF=0.5;AN=8;AO=24;CIGAR=1X;DP=61;DPB=61;DPRA=0.862745;EPP=55.1256;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=968;QR=1429;RO=36;RPL=0;RPP=55.1256;RPPR=81.1833;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:6,14:6:240:14:568:-45.0324,0,-15.5468 1/1:6:0,6:0:0:6:238:-21.7932,-1.80618,0 0/1:17:13,4:13:517:4:162:-9.84945,0,-41.7592 0/0:17:17,0:17:672:0:0:0,-5.11751,-60.808 dDocent_Contig_14663 43 . T C 1064.68 . AB=0.637681;ABP=14.3712;AC=4;AF=0.5;AN=8;AO=44;CIGAR=1X;DP=69;DPB=69;DPRA=0;EPP=98.5551;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.545455;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1481;QR=851;RO=25;RPL=0;RPP=98.5551;RPPR=57.2971;RPR=44;RUN=1;SAF=0;SAP=98.5551;SAR=44;SRF=0;SRP=57.2971;SRR=25;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:6,21:6:206:21:700:-55.1849,0,-10.7483 0/1:28:9,19:9:316:19:643:-49.7596,0,-20.3506 0/1:11:8,3:8:275:3:103:-6.29869,0,-21.7719 0/1:3:2,1:2:54:1:35:-2.59554,0,-4.22645 dDocent_Contig_14664 17 . C T 803.534 . AB=0.636364;ABP=10.1169;AC=3;AF=0.375;AN=8;AO=28;CIGAR=1X;DP=45;DPB=45;DPRA=14.6667;EPP=63.8115;EPPR=18.4661;GTI=0;LEN=1;MEANALT=1;MQM=59.8214;MQMR=52.5882;NS=4;NUMALT=1;ODDS=0;PAIRED=0.428571;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1088;QR=607;RO=17;RPL=0;RPP=63.8115;RPPR=39.9253;RPR=28;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=3;SRP=18.4661;SRR=14;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:4,10:4:140:10:390:-31.2443,0,-8.73051 0/1:17:5,12:5:191:12:464:-36.9887,0,-6.09854 0/1:13:7,6:7:241:6:234:-17.5177,0,-18.113 0/0:1:1,0:1:35:0:0:0,-0.30103,-3.49863 dDocent_Contig_14665 11 . A G 140.752 . AB=0.190476;ABP=37.9607;AC=3;AF=0.375;AN=8;AO=8;CIGAR=1X;DP=50;DPB=50;DPRA=1.75;EPP=20.3821;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=320;QR=1687;RO=42;RPL=0;RPP=20.3821;RPPR=94.2121;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:20,2:20:803:2:78:-0.780117,0,-65.9621 0/1:11:10,1:10:402:1:41:-0.783237,0,-33.2274 0/0:8:8,0:8:322:0:0:0,-2.40824,-29.3483 0/1:9:4,5:4:160:5:201:-15.7612,0,-12.0742 dDocent_Contig_14666 105 . N C 268.196 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=8;CIGAR=1X7I2X1I2M;DP=8;DPB=20.8;DPRA=0;EPP=20.3821;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=1.69407e-21;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=281;QR=0;RO=0;RPL=0;RPP=20.3821;RPPR=0;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:4:0,4:0:0:4:137:-12.668,-1.20412,0 1|1:3:0,3:0:0:3:108:-10.0752,-0.90309,0 1|1:1:0,1:0:0:1:36:-3.59827,-0.30103,0 .:.:.:.:.:.:.:. dDocent_Contig_14668 58 . T G 220.015 . AB=0.5;ABP=3.0103;AC=2;AF=0.25;AN=8;AO=9;CIGAR=1X;DP=74;DPB=74;DPRA=0.321429;EPP=22.5536;EPPR=144.156;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.8;PAO=0;PQA=0;PQR=0;PRO=0;QA=335;QR=2571;RO=65;RPL=9;RPP=22.5536;RPPR=144.156;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=65;SRP=144.156;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:28:28,0:28:1102:0:0:0,-8.42884,-99.4682 0/0:28:28,0:28:1109:0:0:0,-8.42884,-100.097 0/1:15:7,8:7:280:8:309:-23.6496,0,-21.0545 0/1:3:2,1:2:80:1:26:-1.69674,0,-6.68848 dDocent_Contig_14669 38 . T A 431.243 . AB=0.5;ABP=3.0103;AC=2;AF=0.25;AN=8;AO=15;CIGAR=1X;DP=49;DPB=49;DPRA=1.57895;EPP=35.5824;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=602;QR=1351;RO=34;RPL=0;RPP=35.5824;RPPR=76.8404;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:2:2,0:2:81:0:0:0,-0.60206,-7.68573 0/1:20:6,14:6:245:14:561:-44.81,0,-16.4089 0/0:17:17,0:17:660:0:0:0,-5.11751,-59.7139 0/1:10:9,1:9:365:1:41:-1.08427,0,-30.2048 dDocent_Contig_14670 13 . T G 200.15 . AB=0.207547;ABP=42.3836;AC=3;AF=0.375;AN=8;AO=11;CIGAR=1X;DP=61;DPB=61;DPRA=2.20833;EPP=26.8965;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=0.727273;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=430;QR=1977;RO=50;RPL=0;RPP=26.8965;RPPR=111.584;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:11,1:11:442:1:41:-0.482207,0,-36.5232 0/1:29:24,5:24:938:5:188:-8.55108,0,-75.993 0/1:12:7,5:7:280:5:201:-14.8585,0,-21.9592 0/0:8:8,0:8:317:0:0:0,-2.40824,-28.8943 dDocent_Contig_14671 13 . G A 5601.53 . AB=0.501312;ABP=3.016;AC=7;AF=0.875;AN=8;AO=191;CIGAR=1X5M;DP=381;DPB=379.333;DPRA=0;EPP=66.9607;EPPR=102.098;GTI=0;LEN=1;MEANALT=5;MQM=41.7801;MQMR=56.1404;NS=4;NUMALT=4;ODDS=0;PAIRED=0.0418848;PAIREDR=0.701754;PAO=0;PQA=0;PQR=0;PRO=0;QA=6718;QR=2210;RO=57;RPL=0;RPP=417.762;RPPR=126.784;RPR=191;RUN=1;SAF=133;SAP=66.9607;SAR=58;SRF=54;SRP=102.098;SRR=3;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:92:16,4,4,17,46:16:626:4,4,17,46:144,137,530,1628:-121.697,-115.841,-162.101,-115.392,-152.184,-161.652,-85.8509,-122.642,-122.193,-128.196,0,-36.8019,-36.3523,-6.82228,-33.6266 1|1:127:11,4,2,28,76:11:425:4,2,28,76:133,78,952,2676:-246.373,-239.225,-271.039,-243.272,-265.831,-275.688,-173.832,-196.391,-200.438,-198.422,-42.8219,-65.3856,-69.4306,0,-52.966 1|1:105:20,7,1,36,41:20:771:7,1,36,41:226,38,1005,1429:-117.12,-106.281,-167.498,-120.024,-166.488,-183.046,-48.4139,-94.882,-108.62,-100.9,-11.3572,-57.8406,-71.5822,0,-62.3576 1|1:57:10,0,3,16,28:10:388:0,3,16,28:0,109,518,985:-82.3606,-85.3709,-117.259,-76.4677,-108.357,-107.454,-44.504,-76.3942,-67.4922,-71.5777,-8.93854,-40.8387,-31.9357,0,-32.4099 dDocent_Contig_14672 20 . A G 346.828 . AB=0.372093;ABP=9.12072;AC=4;AF=0.5;AN=8;AO=16;CIGAR=1X;DP=43;DPB=43;DPRA=0;EPP=37.7539;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=41.8125;MQMR=55.2963;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=627;QR=1061;RO=27;RPL=0;RPP=37.7539;RPPR=61.6401;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:12,5:12:453:5:185:-11.3769,0,-35.1699 0/1:11:5,6:5:204:6:243:-16.8407,0,-15.1121 0/1:13:9,4:9:363:4:161:-9.61037,0,-29.1207 0/1:2:1,1:1:41:1:38:-2.94407,0,-0.697287 dDocent_Contig_14673 167 . G A 43.4653 . AB=0.153846;ABP=30.0702;AC=2;AF=0.25;AN=8;AO=4;CIGAR=1X;DP=59;DPB=59;DPRA=0.787879;EPP=11.6962;EPPR=113.913;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.8727;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.927273;PAO=0;PQA=0;PQR=0;PRO=0;QA=164;QR=2136;RO=55;RPL=4;RPP=11.6962;RPPR=122.441;RPR=0;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=1;SRP=113.913;SRR=54;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:14,2:14:548:2:82:-2.9632,0,-44.8459 0/0:28:28,0:28:1086:0:0:0,-8.42884,-98.026 0/1:10:8,2:8:297:2:82:-4.76938,0,-24.0621 0/0:5:5,0:5:205:0:0:0,-1.50515,-18.835 dDocent_Contig_14674 133 . G T 222.813 . AB=0.255814;ABP=25.2805;AC=2;AF=0.25;AN=8;AO=13;CIGAR=1X;DP=81;DPB=81;DPRA=3.04167;EPP=31.2394;EPPR=150.67;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=499;QR=2553;RO=68;RPL=0;RPP=31.2394;RPPR=150.67;RPR=13;RUN=1;SAF=0;SAP=31.2394;SAR=13;SRF=0;SRP=150.67;SRR=68;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:30:28,2:28:1056:2:78:0,-1.62743,-87.9414 0/1:26:20,6:20:746:6:232:-13.4222,0,-59.6417 0/1:17:12,5:12:457:5:189:-12.2571,0,-36.3607 0/0:8:8,0:8:294:0:0:0,-2.40824,-26.8112 dDocent_Contig_14675 20 . C G 837.342 . AB=0.462687;ABP=3.82055;AC=3;AF=0.375;AN=8;AO=31;CIGAR=1X;DP=76;DPB=76;DPRA=2.48148;EPP=70.3259;EPPR=92.2337;GTI=0;LEN=1;MEANALT=1;MQM=58.8387;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.935484;PAIREDR=0.866667;PAO=0;PQA=0;PQR=0;PRO=0;QA=1214;QR=1788;RO=45;RPL=0;RPP=70.3259;RPPR=100.727;RPR=31;RUN=1;SAF=31;SAP=70.3259;SAR=0;SRF=44;SRP=92.2337;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:8,19:8:323:19:728:-56.6772,0,-21.3111 0/1:22:16,6:16:624:6:243:-15.6253,0,-49.8673 0/1:18:12,6:12:482:6:243:-16.8296,0,-38.3121 0/0:9:9,0:9:359:0:0:0,-2.70927,-32.6719 dDocent_Contig_14676 33 . C G 383.02 . AB=0.55;ABP=3.44459;AC=4;AF=0.5;AN=8;AO=13;CIGAR=1M1I3M1X;DP=31;DPB=33.6;DPRA=0.814815;EPP=31.2394;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=59.0769;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=518;QR=709;RO=18;RPL=0;RPP=31.2394;RPPR=42.0968;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:17:7,10:7:277:10:398:-31.0066,0,-20.1819 0|0:9:9,0:9:353:0:0:0,-2.70927,-32.1302 1|1:2:0,2:0:0:2:80:-7.59179,-0.60206,0 0|1:3:2,1:2:79:1:40:-3.09259,0,-6.59454 dDocent_Contig_14677 18 . A C 32283.1 . AB=0.690667;ABP=476.658;AC=4;AF=0.5;AN=8;AO=1036;CIGAR=1X;DP=1500;DPB=1500;DPRA=0;EPP=2243.98;EPPR=982.344;GTI=0;LEN=1;MEANALT=1.75;MQM=59.7645;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.800193;PAIREDR=0.771619;PAO=0;PQA=0;PQR=0;PRO=0;QA=41070;QR=17727;RO=451;RPL=0;RPP=2252.66;RPPR=982.344;RPR=1036;RUN=1;SAF=1035;SAP=2243.98;SAR=1;SRF=451;SRP=982.344;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:385:134,251:134:5258:251:9951:-774.989,0,-357.202 0/1:476:124,351:124:4858:351:13931:-1106.91,0,-293.751 0/1:455:133,314:133:5233:314:12449:-981.962,0,-335.898 0/1:184:60,120:60:2378:120:4739:-371.839,0,-159.586 dDocent_Contig_14678 29 . C A 163.256 . AB=0.180328;ABP=57.1547;AC=3;AF=0.5;AN=6;AO=11;CIGAR=1X;DP=61;DPB=61;DPRA=0;EPP=26.8965;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=434;QR=1990;RO=50;RPL=0;RPP=26.8965;RPPR=111.584;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:20,5:20:811:5:192:-10.1229,0,-65.7805 0/1:34:29,5:29:1139:5:203:-8.41804,0,-92.56 ./.:.:.:.:.:.:.:. 0/1:2:1,1:1:40:1:39:-3.2945,0,-3.39362 dDocent_Contig_14680 20 . C T 80.4428 . AB=0.285714;ABP=8.59409;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=64;DPB=64;DPRA=0.84;EPP=11.6962;EPPR=133.299;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=151;QR=2383;RO=60;RPL=0;RPP=11.6962;RPPR=133.299;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:12:12,0:12:469:0:0:0,-3.61236,-42.5558 0/0:27:27,0:27:1070:0:0:0,-8.12781,-96.5887 0/1:14:10,4:10:399:4:151:-9.74325,0,-32.0546 0/0:11:11,0:11:445:0:0:0,-3.31133,-40.4055 dDocent_Contig_14681 107 . N T 264.398 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=8;CIGAR=1X;DP=8;DPB=8;DPRA=0;EPP=20.3821;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=277;QR=0;RO=0;RPL=0;RPP=20.3821;RPPR=0;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:69:-6.55266,-0.60206,0 1/1:1:0,1:0:0:1:35:-3.49863,-0.30103,0 1/1:5:0,5:0:0:5:173:-15.9102,-1.50515,0 ./.:.:.:.:.:.:.:. dDocent_Contig_14682 50 . G A 160.855 . AB=0.169014;ABP=70.5706;AC=2;AF=0.25;AN=8;AO=13;CIGAR=1X;DP=93;DPB=93;DPRA=3.11111;EPP=31.2394;EPPR=174.557;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.923077;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=485;QR=2959;RO=79;RPL=13;RPP=31.2394;RPPR=174.557;RPR=0;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=79;SRP=174.557;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:20,3:20:762:3:109:-3.24325,0,-61.9842 0/1:48:39,9:39:1456:9:337:-16.2332,0,-116.862 0/0:13:11,1:11:429:1:39:0,-0.105452,-35.0684 0/0:9:9,0:9:312:0:0:0,-2.70927,-28.4056 dDocent_Contig_14684 85 . A G 31.4263 . AB=0.333333;ABP=4.45795;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X;DP=64;DPB=64;DPRA=0.310345;EPP=7.35324;EPPR=137.642;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=70;QR=2102;RO=62;RPL=2;RPP=7.35324;RPPR=137.642;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:14:14,0:14:474:0:0:0,-4.21442,-42.9848 0/0:40:40,0:40:1352:0:0:0,-12.0412,-121.977 0/1:6:4,2:4:136:2:70:-4.84122,0,-10.7695 0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9449 dDocent_Contig_14685 49 . G T 42.5503 . AB=0.166667;ABP=20.3821;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=52;DPB=52;DPRA=1.58824;EPP=9.52472;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.979592;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=1948;RO=49;RPL=0;RPP=9.52472;RPPR=109.412;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:6:6,0:6:233:0:0:0,-1.80618,-21.3375 0/1:18:15,3:15:607:3:122:-5.95395,0,-49.5499 0/0:20:20,0:20:798:0:0:0,-6.0206,-72.1378 0/0:8:8,0:8:310:0:0:0,-2.40824,-28.2576 dDocent_Contig_14687 9 . C T 40.0069 . AB=0.166667;ABP=20.3821;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X3M1X3M1X3M1X;DP=59;DPB=59;DPRA=6.375;EPP=13.8677;EPPR=120.27;GTI=0;LEN=1;MEANALT=1;MQM=55.6;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=196;QR=2141;RO=54;RPL=0;RPP=13.8677;RPPR=120.27;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:18:15,3:15:596:3:116:-5.39845,0,-48.5628 0|0:33:31,2:31:1227:2:80:0,-2.72989,-103.508 0|0:4:4,0:4:160:0:0:0,-1.20412,-14.784 0|0:4:4,0:4:158:0:0:0,-1.20412,-14.6007 dDocent_Contig_14689 138 . G A 54.0012 . AB=0;ABP=0;AC=2;AF=0.333333;AN=6;AO=2;CIGAR=1X;DP=26;DPB=26;DPRA=0.166667;EPP=7.35324;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=55;QR=830;RO=24;RPL=0;RPP=7.35324;RPPR=55.1256;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=55.1256;SRR=24;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 0/0:17:17,0:17:587:0:0:0,-5.11751,-53.1557 0/0:7:7,0:7:243:0:0:0,-2.10721,-22.2089 1/1:2:0,2:0:0:2:55:-5.22366,-0.60206,0 dDocent_Contig_14692 82 . A C 281.037 . AB=0.125;ABP=22.5536;AC=3;AF=0.5;AN=6;AO=13;CIGAR=1X;DP=40;DPB=40;DPRA=0;EPP=31.2394;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=445;QR=913;RO=27;RPL=13;RPP=31.2394;RPPR=61.6401;RPR=0;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:11:1,10:1:33:10:339:-27.5365,-0.0121952,0 0/1:16:14,2:14:476:2:70:-1.83085,0,-38.3413 0/0:13:12,1:12:404:1:36:0,-0.315115,-33.0816 ./.:.:.:.:.:.:.:. dDocent_Contig_14693 43 . A T 36.7311 . AB=0.222222;ABP=9.04217;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X;DP=38;DPB=38;DPRA=0.931034;EPP=7.35324;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.972222;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=1437;RO=36;RPL=0;RPP=7.35324;RPPR=81.1833;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:7,2:7:284:2:82:-5.07041,0,-23.2241 0/0:16:16,0:16:645:0:0:0,-4.81648,-58.3838 0/0:12:12,0:12:468:0:0:0,-3.61236,-42.4617 0/0:1:1,0:1:40:0:0:0,-0.30103,-3.99568 dDocent_Contig_14694 11 . A T 65.0218 . AB=0.333333;ABP=5.18177;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=34;DPB=34;DPRA=1.08;EPP=9.52472;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=53.2581;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.83871;PAO=0;PQA=0;PQR=0;PRO=0;QA=117;QR=1222;RO=31;RPL=0;RPP=9.52472;RPPR=70.3259;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:18:18,0:18:720:0:0:0,-5.41854,-57.068 0/0:4:4,0:4:152:0:0:0,-1.20412,-14.0477 0/1:9:6,3:6:229:3:117:-8.20094,0,-18.2594 0/0:3:3,0:3:121:0:0:0,-0.90309,-8.95069 dDocent_Contig_14695 22 . G T 146.368 . AB=0.625;ABP=4.09604;AC=1;AF=0.125;AN=8;AO=5;CIGAR=2X;DP=61;DPB=61;DPRA=0.45283;EPP=13.8677;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=204;QR=2218;RO=56;RPL=0;RPP=13.8677;RPPR=124.613;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:27:27,0:27:1071:0:0:0,-8.12781,-96.6841 0|0:20:20,0:20:783:0:0:0,-6.0206,-70.7898 0|1:8:3,5:3:119:5:204:-16.3358,0,-8.68715 0|0:6:6,0:6:245:0:0:0,-1.80618,-22.4295 dDocent_Contig_14696 18 . C A 126.992 . AB=0.117647;ABP=67.7713;AC=2;AF=0.25;AN=8;AO=6;CIGAR=2M4I1X3M10I7M2X1M;DP=101;DPB=99.875;DPRA=1.02;EPP=16.0391;EPPR=89.8692;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=2.5;PQA=101;PQR=101;PRO=2.5;QA=239;QR=1555;RO=40;RPL=0;RPP=16.0391;RPPR=89.8692;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:18:1,2:1:40:2:80:-6.29155,0,-2.69431 0|0:43:25,0:25:965:0:0:0,-7.52575,-86.7751 0|1:33:11,4:11:432:4:159:-9.78403,0,-34.3347 0|0:7:3,0:3:118:0:0:0,-0.90309,-10.6004 dDocent_Contig_14697 1 . N G 74.0438 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=78;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:78:-7.4033,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_14699 23 . A T 110.057 . AB=0.24;ABP=17.6895;AC=2;AF=0.25;AN=8;AO=6;CIGAR=1X;DP=41;DPB=41;DPRA=1.5625;EPP=16.0391;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=235;QR=1402;RO=35;RPL=0;RPP=16.0391;RPPR=79.0118;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:12:12,0:12:485:0:0:0,-3.61236,-44.0003 0/1:23:18,5:18:715:5:195:-10.9988,0,-57.7495 0/1:2:1,1:1:38:1:40:-3.39362,0,-3.19521 0/0:4:4,0:4:164:0:0:0,-1.20412,-15.1499 dDocent_Contig_14700 209 . N G 114.653 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=123;QR=0;RO=0;RPL=3;RPP=9.52472;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:123:-11.4648,-0.90309,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_14702 136 . G A 1032.82 . AB=0.569444;ABP=6.02623;AC=5;AF=0.625;AN=8;AO=49;CIGAR=1X;DP=80;DPB=80;DPRA=0;EPP=109.412;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.938776;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1418;QR=981;RO=31;RPL=0;RPP=109.412;RPPR=70.3259;RPR=49;RUN=1;SAF=0;SAP=109.412;SAR=49;SRF=0;SRP=70.3259;SRR=31;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:14,9:14:449:9:230:-14.0278,0,-33.7949 0/1:37:15,22:15:490:22:663:-48.8177,0,-33.2748 0/1:12:2,10:2:42:10:292:-22.9536,0,-0.377117 1/1:8:0,8:0:0:8:233:-21.2556,-2.40824,0 dDocent_Contig_14703 119 . C T 48.914 . AB=0.333333;ABP=5.18177;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=22;DPB=22;DPRA=1.38462;EPP=9.52472;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=101;QR=615;RO=19;RPL=0;RPP=9.52472;RPPR=44.2683;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=44.2683;SRR=19;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:12:12,0:12:391:0:0:0,-3.61236,-35.507 0/1:9:6,3:6:191:3:101:-6.7145,0,-14.7953 0/0:1:1,0:1:33:0:0:0,-0.30103,-3.29913 ./.:.:.:.:.:.:.:. dDocent_Contig_14704 64 . A G 56.6763 . AB=0.230769;ABP=11.1951;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=43;DPB=43;DPRA=1.3;EPP=9.52472;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.85;PAO=0;PQA=0;PQR=0;PRO=0;QA=121;QR=1612;RO=40;RPL=3;RPP=9.52472;RPPR=89.8692;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:12:12,0:12:480:0:0:0,-3.61236,-43.551 0/0:10:10,0:10:407:0:0:0,-3.0103,-36.9906 0/0:8:8,0:8:317:0:0:0,-2.40824,-28.8944 0/1:13:10,3:10:408:3:121:-7.3666,0,-33.1672 dDocent_Contig_14705 92 . T A 68.2385 . AB=0;ABP=0;AC=2;AF=0.333333;AN=6;AO=2;CIGAR=2X;DP=29;DPB=29;DPRA=0.148148;EPP=7.35324;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.730769;PAO=0;PQA=0;PQR=0;PRO=0;QA=70;QR=824;RO=26;RPL=2;RPP=7.35324;RPPR=59.4686;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. 0|0:16:15,0:15:455:0:0:0,-4.51545,-41.1768 0|0:11:11,0:11:369:0:0:0,-3.31133,-33.5338 1|1:2:0,2:0:0:2:70:-6.6474,-0.60206,0 dDocent_Contig_14707 96 . A T 239.261 . AB=0.318182;ABP=15.6443;AC=3;AF=0.375;AN=8;AO=14;CIGAR=1X2M1X;DP=46;DPB=51.75;DPRA=7.33333;EPP=33.4109;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.928571;PAIREDR=0.967742;PAO=23;PQA=771;PQR=0;PRO=0;QA=460;QR=847;RO=31;RPL=0;RPP=33.4109;RPPR=70.3259;RPR=14;RUN=1;SAF=0;SAP=33.4109;SAR=14;SRF=0;SRP=70.3259;SRR=31;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:14:11,3:11:296:3:100:-4.77962,0,-22.3677 0|1:13:4,9:4:112:9:294:-22.5362,0,-6.15349 0|1:17:15,2:15:413:2:66:-0.821506,0,-32.0088 0|0:2:1,0:1:26:0:0:0,-0.30103,-2.44484 dDocent_Contig_14708 114 . T A 575.461 . AB=0.525;ABP=3.22745;AC=3;AF=0.375;AN=8;AO=21;CIGAR=1X;DP=49;DPB=49;DPRA=1.48148;EPP=48.6112;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.607143;PAO=0;PQA=0;PQR=0;PRO=0;QA=821;QR=942;RO=28;RPL=0;RPP=48.6112;RPPR=63.8115;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=0;SRP=63.8115;SRR=28;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:8:2,6:2:68:6:243:-19.8394,0,-4.04964 0/1:9:2,7:2:70:7:266:-21.5866,0,-3.93813 0/1:23:15,8:15:505:8:312:-21.5159,0,-38.8481 0/0:9:9,0:9:299:0:0:0,-2.70927,-27.2334 dDocent_Contig_14709 63 . T C 911.106 . AB=0.636364;ABP=11.8936;AC=3;AF=0.375;AN=8;AO=35;CIGAR=1X;DP=62;DPB=62;DPRA=2.61905;EPP=79.0118;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1245;QR=844;RO=27;RPL=35;RPP=79.0118;RPPR=61.6401;RPR=0;RUN=1;SAF=35;SAP=79.0118;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:5,5:5:164:5:179:-13.4501,0,-12.0737 0/1:30:8,22:8:240:22:785:-61.9436,0,-12.8653 0/1:15:7,8:7:229:8:281:-21.1149,0,-16.4141 0/0:7:7,0:7:211:0:0:0,-2.10721,-19.2862 dDocent_Contig_14710 54 . G A 67.4942 . AB=0.137255;ABP=61.2994;AC=2;AF=0.25;AN=8;AO=7;CIGAR=1X;DP=120;DPB=120;DPRA=0.73913;EPP=18.2106;EPPR=239.778;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.2124;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.938053;PAO=0;PQA=0;PQR=0;PRO=0;QA=275;QR=4382;RO=113;RPL=7;RPP=18.2106;RPPR=248.387;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=112;SRP=239.778;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:43:43,0:43:1666:0:0:0,-12.9443,-150.17 0/1:43:38,5:38:1480:5:200:-5.43525,0,-120.503 0/0:26:26,0:26:998:0:0:0,-7.82678,-90.1171 0/1:8:6,2:6:238:2:75:-4.71186,0,-14.9898 dDocent_Contig_14711 77 . T C 1003.56 . AB=0.566038;ABP=5.01789;AC=5;AF=0.625;AN=8;AO=37;CIGAR=1X;DP=60;DPB=60;DPRA=0;EPP=83.3548;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1337;QR=835;RO=23;RPL=37;RPP=83.3548;RPPR=52.9542;RPR=0;RUN=1;SAF=37;SAP=83.3548;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:4,15:4:139:15:544:-43.5777,0,-7.132 0/1:13:8,5:8:294:5:176:-12.2707,0,-22.899 0/1:21:11,10:11:402:10:362:-26.6035,0,-30.204 1/1:7:0,7:0:0:7:255:-23.3018,-2.10721,0 dDocent_Contig_14712 14 . C T 488.462 . AB=0.232759;ABP=74.9684;AC=2;AF=0.25;AN=8;AO=27;CIGAR=1X1M1X2M1X3M1X4M1X1M2X1M2X;DP=180;DPB=180;DPRA=0;EPP=61.6401;EPPR=155.013;GTI=0;LEN=1;MEANALT=5.5;MQM=20.8889;MQMR=60;NS=4;NUMALT=4;ODDS=0;PAIRED=0;PAIREDR=0.885714;PAO=0;PQA=0;PQR=0;PRO=0;QA=564;QR=2721;RO=70;RPL=0;RPP=61.6401;RPPR=155.013;RPR=27;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=70;SRP=155.013;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:71:28,19,6,4,11:28:1110:19,6,4,11:412,239,80,216:-17.8232,0,-85.776,-19.4296,-84.6878,-109.087,-21.2574,-86.5106,-105.906,-111.515,-13.0607,-78.3347,-97.7216,-99.5458,-101.222 0|0:49:9,0,1,25,8:9:334:0,1,25,8:0,40,566,101:-34.1835,-36.8928,-64.2546,-35.7558,-63.1183,-62.8173,0,-27.4088,-26.2746,-19.8831,-32.251,-59.6152,-58.4797,-22.8146,-57.207 0|1:45:24,8,3,7,3:24:923:8,3,7,3:152,118,108,72:-1.90212,0,-73.5122,-5.71467,-72.5216,-80.713,-3.33864,-70.1586,-75.8449,-77.1367,-4.35133,-71.1622,-76.8555,-74.4856,-79.3544 0|0:15:9,0,0,3,3:9:354:0,0,3,3:0,0,52,72:-2.08905,-4.79832,-34.0469,-4.79832,-34.0469,-34.0469,-1.78386,-31.0407,-31.0407,-30.1377,0,-29.3047,-29.3047,-26.32,-28.4016 dDocent_Contig_14714 98 . N T 220.264 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=7;CIGAR=1X;DP=7;DPB=7;DPRA=0;EPP=18.2106;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=9.4572;PAIRED=0.142857;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=241;QR=0;RO=0;RPL=7;RPP=18.2106;RPPR=0;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:7:0,7:0:0:7:241:-22.0264,-2.10721,0 ./.:.:.:.:.:.:.:. dDocent_Contig_14715 33 . G T 86.0551 . AB=0.184211;ABP=35.9253;AC=3;AF=0.375;AN=8;AO=7;CIGAR=1X;DP=45;DPB=45;DPRA=1.80952;EPP=18.2106;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.428571;PAIREDR=0.810811;PAO=0;PQA=0;PQR=0;PRO=0;QA=270;QR=1455;RO=37;RPL=0;RPP=18.2106;RPPR=83.3548;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:13,2:13:520:2:81:-3.17028,0,-42.6311 0/1:6:4,2:4:160:2:71:-4.93325,0,-12.9772 0/1:17:13,3:13:490:3:118:-5.8925,0,-39.3529 0/0:7:7,0:7:285:0:0:0,-2.10721,-26.0244 dDocent_Contig_14716 66 . C A 1244.08 . AB=0.544304;ABP=4.35716;AC=4;AF=0.5;AN=8;AO=43;CIGAR=5M1X;DP=79;DPB=82.6667;DPRA=0;EPP=96.3836;EPPR=59.4686;GTI=0;LEN=1;MEANALT=2.25;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1692;QR=1014;RO=26;RPL=43;RPP=96.3836;RPPR=59.4686;RPR=0;RUN=1;SAF=43;SAP=96.3836;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:26:4,1,0,21:4:160:1,0,21:40,0,820:-66.1884,-64.097,-76.9778,-67.3925,-77.2788,-80.5742,0,-9.88524,-13.1803,-6.85869 0|1:24:13,4,2,5:13:511:4,2,5:148,80,195:-12.1168,-3.9325,-44.7609,-9.43659,-39.3741,-50.874,0,-29.9404,-35.4498,-40.5361 0|1:20:7,2,0,10:7:264:2,0,10:78,0,400:-30.9105,-26.6041,-47.6346,-33.0177,-48.2366,-54.6495,0,-15.2597,-21.6795,-18.6692 0|1:9:2,0,0,7:2:79:0,0,7:0,0,277:-22.5901,-23.1922,-29.693,-23.1922,-29.693,-29.693,0,-6.89557,-6.89557,-4.78836 dDocent_Contig_14717 7 . C T 300.286 . AB=0.4;ABP=5.61607;AC=2;AF=0.25;AN=8;AO=13;CIGAR=1X;DP=84;DPB=84;DPRA=9;EPP=31.2394;EPPR=155.013;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.985714;PAO=0;PQA=0;PQR=0;PRO=0;QA=474;QR=2679;RO=70;RPL=0;RPP=31.2394;RPPR=155.013;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=70;SRP=155.013;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:51:49,1:49:1881:1:11:0,-14.2013,-168.296 0/1:25:14,11:14:528:11:426:-31.1691,0,-40.3368 0/1:5:4,1:4:154:1:37:-2.19268,0,-12.7283 0/0:3:3,0:3:116:0:0:0,-0.90309,-10.8177 dDocent_Contig_14718 109 . T G 96.2893 . AB=0.272727;ABP=12.8806;AC=2;AF=0.25;AN=8;AO=6;CIGAR=1X;DP=42;DPB=42;DPRA=1.1;EPP=16.0391;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=207;QR=1150;RO=34;RPL=0;RPP=16.0391;RPPR=76.8404;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=76.8404;SRR=34;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:9:8,0:8:275:0:0:0,-2.40824,-24.8243 0/1:15:10,5:10:325:5:172:-11.303,0,-25.0478 0/0:11:11,0:11:376:0:0:0,-3.31133,-34.1682 0/1:7:5,1:5:174:1:35:-1.37254,0,-13.8957 dDocent_Contig_14719 172 . G T 122.567 . AB=0.3125;ABP=7.89611;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=29;DPB=29;DPRA=3.69231;EPP=13.8677;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=201;QR=961;RO=24;RPL=5;RPP=13.8677;RPPR=55.1256;RPR=0;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=55.1256;SRR=24;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:11,5:11:446:5:201:-13.654,0,-35.6797 0/0:6:6,0:6:242:0:0:0,-1.80618,-22.1569 0/0:6:6,0:6:232:0:0:0,-1.80618,-21.2442 0/0:1:1,0:1:41:0:0:0,-0.30103,-4.09457 dDocent_Contig_14720 21 . C T 225.322 . AB=0.391304;ABP=5.3706;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=34;DPB=34;DPRA=1.04545;EPP=22.5536;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=358;QR=995;RO=25;RPL=0;RPP=22.5536;RPPR=57.2971;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:11,0:11:431:0:0:0,-3.31133,-39.1437 0/1:14:10,4:10:402:4:157:-10.2935,0,-32.3255 0/1:9:4,5:4:162:5:201:-15.7616,0,-12.2577 ./.:.:.:.:.:.:.:. dDocent_Contig_14721 14 . C A 718.218 . AB=0.511628;ABP=3.0608;AC=5;AF=0.625;AN=8;AO=25;CIGAR=1X2M1X2M1X;DP=46;DPB=46;DPRA=0;EPP=57.2971;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=974;QR=830;RO=21;RPL=0;RPP=57.2971;RPPR=48.6112;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:23:14,9:14:552:9:354:-25.2978,0,-43.0986 1|1:3:0,3:0:0:3:121:-11.2802,-0.90309,0 0|1:10:1,9:1:40:9:346:-28.486,0,-0.985379 0|1:10:6,4:6:238:4:153:-11.1306,0,-18.7841 dDocent_Contig_14723 10 . T A 477.834 . AB=0.351852;ABP=13.3047;AC=3;AF=0.375;AN=8;AO=20;CIGAR=1X;DP=101;DPB=101;DPRA=0;EPP=46.4397;EPPR=178.9;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=799;QR=3262;RO=81;RPL=0;RPP=46.4397;RPPR=178.9;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=81;SRP=178.9;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:35:25,10:25:1013:10:395:-25.3719,0,-80.9274 0/0:47:46,1:46:1847:1:40:0,-10.1527,-162.436 0/1:12:7,5:7:279:5:202:-14.9497,0,-21.8688 0/1:7:3,4:3:123:4:162:-12.8597,0,-9.35758 dDocent_Contig_14724 28 . G C 1205.47 . AB=0.24424;ABP=126.304;AC=4;AF=0.5;AN=8;AO=53;CIGAR=1X;DP=217;DPB=217;DPRA=0;EPP=118.098;EPPR=359.132;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2132;QR=6553;RO=164;RPL=0;RPP=118.098;RPPR=359.132;RPR=53;RUN=1;SAF=53;SAP=118.098;SAR=0;SRF=164;SRP=359.132;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:81:64,17:64:2560:17:685:-37.5966,0,-206.15 0/1:92:68,24:68:2720:24:961:-59.097,0,-217.223 0/1:32:25,7:25:995:7:282:-16.1196,0,-80.2105 0/1:12:7,5:7:278:5:204:-15.1317,0,-21.7768 dDocent_Contig_14725 200 . C T 62.6817 . AB=0.178571;ABP=28.1373;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=49;DPB=49;DPRA=0.666667;EPP=13.8677;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=194;QR=1693;RO=44;RPL=5;RPP=13.8677;RPPR=98.5551;RPR=0;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=98.5551;SRR=44;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:21:21,0:21:812:0:0:0,-6.32163,-73.4056 0/1:20:17,3:17:665:3:117:-4.88978,0,-54.1657 0/1:8:6,2:6:216:2:77:-4.9009,0,-17.3784 ./.:.:.:.:.:.:.:. dDocent_Contig_14726 76 . A G 172.372 . AB=0.533333;ABP=3.15506;AC=2;AF=0.25;AN=8;AO=9;CIGAR=1X;DP=44;DPB=44;DPRA=1.5;EPP=22.5536;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.942857;PAO=0;PQA=0;PQR=0;PRO=0;QA=307;QR=1185;RO=35;RPL=9;RPP=22.5536;RPPR=79.0118;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:21:20,1:20:677:1:35:0,-2.823,-57.75 0/1:7:2,5:2:70:5:171:-13.6192,0,-4.54019 0/1:8:5,3:5:172:3:101:-7.01553,0,-13.4102 0/0:8:8,0:8:266:0:0:0,-2.40824,-24.2645 dDocent_Contig_14728 14 . G A 2680.88 . 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G C 43.6674 . AB=0.375;ABP=4.09604;AC=2;AF=0.25;AN=8;AO=4;CIGAR=1X;DP=35;DPB=35;DPRA=0.727273;EPP=11.6962;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=140;QR=1021;RO=30;RPL=4;RPP=11.6962;RPPR=68.1545;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:11,0:11:376:0:0:0,-3.31133,-34.1703 0/0:16:14,1:14:477:1:35:0,-1.22675,-39.8793 0/1:5:3,2:3:100:2:70:-5.14225,0,-7.82551 0/1:3:2,1:2:68:1:35:-2.59554,0,-5.55484 dDocent_Contig_14731 173 . C T 69.6496 . AB=0.333333;ABP=5.18177;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=19;DPB=19;DPRA=2.7;EPP=9.52472;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=626;RO=16;RPL=3;RPP=9.52472;RPPR=37.7539;RPR=0;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=37.7539;SRR=16;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:6:6,0:6:239:0:0:0,-1.80618,-21.8839 0/1:9:6,3:6:227:3:122:-8.66322,0,-18.078 0/0:1:1,0:1:40:0:0:0,-0.30103,-3.99568 0/0:3:3,0:3:120:0:0:0,-0.90309,-11.1877 dDocent_Contig_14732 192 . T C 45.6361 . AB=0.5;ABP=3.0103;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=17;DPB=17;DPRA=0.615385;EPP=7.35324;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=80;QR=587;RO=15;RPL=2;RPP=7.35324;RPPR=35.5824;RPR=0;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=35.5824;SRR=15;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5,0:5:192:0:0:0,-1.50515,-17.6487 ./.:.:.:.:.:.:.:. 0/0:8:8,0:8:315:0:0:0,-2.40824,-28.7153 0/1:4:2,2:2:80:2:80:-6.38745,0,-6.38767 dDocent_Contig_14733 12 . A G 194.039 . AB=0.196721;ABP=51.7438;AC=3;AF=0.375;AN=8;AO=12;CIGAR=1X;DP=79;DPB=79;DPRA=1.12963;EPP=29.068;EPPR=148.499;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=467;QR=2700;RO=67;RPL=0;RPP=29.068;RPPR=148.499;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=67;SRP=148.499;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:38:32,6:32:1280:6:230:-9.62553,0,-104.025 0/0:18:18,0:18:728:0:0:0,-5.41854,-65.8437 0/1:10:6,4:6:245:4:158:-11.5896,0,-19.4192 0/1:13:11,2:11:447:2:79:-3.58385,0,-36.6716 dDocent_Contig_14734 16 . C T 381.633 . AB=0.301887;ABP=21.0786;AC=2;AF=0.25;AN=8;AO=16;CIGAR=1X;DP=59;DPB=59;DPRA=8.83333;EPP=37.7539;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=631;QR=1734;RO=43;RPL=0;RPP=37.7539;RPPR=96.3836;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:18,4:18:715:4:157:-7.88502,0,-58.0498 0/1:31:19,12:19:774:12:474:-33.6756,0,-60.6468 0/0:5:5,0:5:204:0:0:0,-1.50515,-18.744 0/0:1:1,0:1:41:0:0:0,-0.30103,-4.09457 dDocent_Contig_14735 9 . A G 55.2876 . AB=0.272727;ABP=7.94546;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=42;DPB=42;DPRA=1.06452;EPP=9.52472;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=113;QR=1481;RO=39;RPL=0;RPP=9.52472;RPPR=87.6977;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:21:21,0:21:800:0:0:0,-6.32163,-72.3244 0/1:11:8,3:8:296:3:113:-7.22764,0,-23.6805 0/0:6:6,0:6:233:0:0:0,-1.80618,-21.3401 0/0:4:4,0:4:152:0:0:0,-1.20412,-14.0496 dDocent_Contig_14736 125 . T C 33.3243 . AB=0.333333;ABP=4.45795;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X;DP=25;DPB=25;DPRA=0.947368;EPP=7.35324;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=72;QR=805;RO=23;RPL=0;RPP=7.35324;RPPR=52.9542;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=52.9542;SRR=23;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:7:7,0:7:247:0:0:0,-2.10721,-22.5733 0/0:11:11,0:11:385:0:0:0,-3.31133,-34.9845 0/1:6:4,2:4:143:2:72:-5.03054,0,-11.4151 0/0:1:1,0:1:30:0:0:0,-0.30103,-2.99957 dDocent_Contig_14737 173 . G A 109.234 . AB=0.277778;ABP=10.7311;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=38;DPB=38;DPRA=2.7;EPP=13.8677;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=193;QR=1293;RO=33;RPL=5;RPP=13.8677;RPPR=74.6689;RPR=0;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=74.6689;SRR=33;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:13,5:13:508:5:193:-12.3212,0,-40.6438 0/0:12:12,0:12:462:0:0:0,-3.61236,-41.9162 0/0:4:4,0:4:163:0:0:0,-1.20412,-15.0584 0/0:4:4,0:4:160:0:0:0,-1.20412,-14.7829 dDocent_Contig_14738 25 . G C 672.945 . AB=0.412698;ABP=7.18091;AC=3;AF=0.5;AN=6;AO=26;CIGAR=12M1X;DP=63;DPB=61.1538;DPRA=0;EPP=59.4686;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.961538;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1002;QR=1308;RO=34;RPL=0;RPP=59.4686;RPPR=76.8404;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:19:9,0,10:9:356:0,10:0,405:-31.0911,-33.8003,-63.0948,0,-29.6941,-26.6838 0|1:35:21,3,11:21:798:3,11:108,407:-26.9721,-24.4841,-89.0285,0,-56.649,-62.1469 0|1:9:4,0,5:4:154:0,5:0,190:-14.7543,-15.9584,-28.6049,0,-13.0289,-11.5238 .:.:.:.:.:.:.:. dDocent_Contig_14739 48 . T C 837.975 . AB=0.690476;ABP=16.2459;AC=2;AF=0.25;AN=8;AO=29;CIGAR=1X;DP=70;DPB=70;DPRA=1.5;EPP=65.983;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.896552;PAIREDR=0.97561;PAO=0;PQA=0;PQR=0;PRO=0;QA=1102;QR=1609;RO=41;RPL=29;RPP=65.983;RPPR=92.0407;RPR=0;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:8:8,0:8:318:0:0:0,-2.40824,-28.9866 0/1:23:5,18:5:203:18:684:-54.9486,0,-11.7294 0/1:19:8,11:8:312:11:418:-32.2468,0,-22.7202 0/0:20:20,0:20:776:0:0:0,-6.0206,-70.1522 dDocent_Contig_14740 82 . G A 340.634 . AB=0.421053;ABP=5.06748;AC=4;AF=0.5;AN=8;AO=16;CIGAR=1X;DP=38;DPB=38;DPRA=0;EPP=37.7539;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=572;QR=779;RO=22;RPL=16;RPP=37.7539;RPPR=50.7827;RPR=0;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:6,5:6:189:5:173:-12.5966,0,-14.0059 0/1:12:10,2:10:368:2:74:-3.41352,0,-29.8567 0/1:4:2,2:2:74:2:74:-5.82176,0,-5.82176 0/1:11:4,7:4:148:7:251:-19.6253,0,-10.3706 dDocent_Contig_14741 7 . C A 1148.4 . AB=0.577465;ABP=6.71098;AC=4;AF=0.5;AN=8;AO=41;CIGAR=1X;DP=71;DPB=71;DPRA=0;EPP=92.0407;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.780488;PAIREDR=0.966667;PAO=0;PQA=0;PQR=0;PRO=0;QA=1580;QR=1151;RO=30;RPL=0;RPP=92.0407;RPPR=68.1545;RPR=41;RUN=1;SAF=41;SAP=92.0407;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:13,13:13:490:13:504:-37.8823,0,-36.6163 0/1:31:8,23:8:312:23:886:-70.7286,0,-19.113 0/1:10:7,3:7:271:3:117:-7.90008,0,-21.746 0/1:4:2,2:2:78:2:73:-5.72698,0,-6.19935 dDocent_Contig_14742 27 . T C 193.833 . AB=0.391304;ABP=5.3706;AC=3;AF=0.375;AN=8;AO=9;CIGAR=1X;DP=36;DPB=36;DPRA=0.589744;EPP=22.5536;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=340;QR=1068;RO=27;RPL=0;RPP=22.5536;RPPR=61.6401;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:6:3,3:3:123:3:117:-9.10311,0,-9.65861 0/1:11:8,3:8:320:3:103:-6.29663,0,-25.8565 0/0:13:13,0:13:504:0:0:0,-3.91339,-45.6989 0/1:6:3,3:3:121:3:120:-9.38151,0,-9.47402 dDocent_Contig_14743 44 . G C 2534.1 . AB=0.671642;ABP=20.1552;AC=6;AF=0.75;AN=8;AO=79;CIGAR=1X;DP=102;DPB=102;DPRA=0;EPP=174.557;EPPR=44.6459;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3102;QR=873;RO=23;RPL=0;RPP=174.557;RPPR=44.6459;RPR=79;RUN=1;SAF=79;SAP=174.557;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:49:13,36:13:491:36:1405:-111.966,0,-29.7737 0/1:18:9,9:9:347:9:353:-26.713,0,-26.1691 1/1:24:1,23:1:35:23:902:-77.9927,-3.72609,0 1/1:11:0,11:0:0:11:442:-40.1362,-3.31133,0 dDocent_Contig_14744 39 . A G 326.84 . AB=0.733333;ABP=10.1038;AC=1;AF=0.125;AN=8;AO=11;CIGAR=1X;DP=35;DPB=35;DPRA=2.25;EPP=26.8965;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=425;QR=964;RO=24;RPL=0;RPP=26.8965;RPPR=55.1256;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:4,11:4:159:11:425:-34.0818,0,-10.176 0/0:8:8,0:8:317:0:0:0,-2.40824,-28.8948 0/0:9:9,0:9:365:0:0:0,-2.70927,-33.2145 0/0:3:3,0:3:123:0:0:0,-0.90309,-11.4648 dDocent_Contig_14745 32 . T C 1323.9 . AB=0.559524;ABP=5.59539;AC=4;AF=0.5;AN=8;AO=47;CIGAR=1X;DP=84;DPB=84;DPRA=0;EPP=105.07;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.783784;PAO=0;PQA=0;PQR=0;PRO=0;QA=1819;QR=1465;RO=37;RPL=0;RPP=105.07;RPPR=83.3548;RPR=47;RUN=1;SAF=47;SAP=105.07;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:38:18,20:18:710:20:788:-59.7968,0,-52.7875 0/1:14:8,6:8:319:6:223:-16.2082,0,-24.8615 0/1:16:6,10:6:240:10:376:-29.3683,0,-17.1581 0/1:16:5,11:5:196:11:432:-34.4149,0,-13.1974 dDocent_Contig_14746 146 . A G 341.669 . AB=0.35;ABP=6.91895;AC=3;AF=0.375;AN=8;AO=12;CIGAR=1X;DP=37;DPB=37;DPRA=2.08333;EPP=29.068;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=454;QR=925;RO=25;RPL=0;RPP=29.068;RPPR=57.2971;RPR=12;RUN=1;SAF=0;SAP=29.068;SAR=12;SRF=0;SRP=57.2971;SRR=25;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:13,7:13:474:7:264:-18.0982,0,-36.972 0/0:10:10,0:10:373:0:0:0,-3.0103,-33.9195 1/1:5:0,5:0:0:5:190:-17.4664,-1.50515,0 0/0:2:2,0:2:78:0:0:0,-0.60206,-7.40347 dDocent_Contig_14747 97 . A G 71.723 . AB=0.307692;ABP=7.18621;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=35;DPB=35;DPRA=1.77273;EPP=11.6962;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=135;QR=1061;RO=31;RPL=4;RPP=11.6962;RPPR=70.3259;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:9,4:9:308:4:135:-8.56991,0,-24.1391 0/0:16:16,0:16:551:0:0:0,-4.81648,-49.9164 0/0:4:4,0:4:137:0:0:0,-1.20412,-12.6681 0/0:2:2,0:2:65:0:0:0,-0.60206,-6.17345 dDocent_Contig_14748 159 . C T 93.2306 . AB=0.571429;ABP=3.32051;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=32;DPB=32;DPRA=0.84;EPP=11.6962;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=142;QR=942;RO=28;RPL=4;RPP=11.6962;RPPR=63.8115;RPR=0;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=63.8115;SRR=28;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5,0:5:171:0:0:0,-1.50515,-15.7265 0/0:11:11,0:11:381:0:0:0,-3.31133,-34.6237 0/0:9:9,0:9:295:0:0:0,-2.70927,-26.8685 0/1:7:3,4:3:95:4:142:-11.022,0,-6.75677 dDocent_Contig_14749 27 . C G 84.6945 . AB=0.6;ABP=3.44459;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=52;DPB=52;DPRA=0.319149;EPP=9.52472;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=1936;RO=49;RPL=0;RPP=9.52472;RPPR=109.412;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:5:2,3:2:75:3:122:-9.86734,0,-5.61365 0/0:6:6,0:6:244:0:0:0,-1.80618,-22.3388 0/0:30:30,0:30:1183:0:0:0,-9.0309,-106.745 0/0:11:11,0:11:434:0:0:0,-3.31133,-39.4097 dDocent_Contig_14750 12 . C T 81.0039 . AB=0;ABP=0;AC=2;AF=0.25;AN=8;AO=4;CIGAR=1X;DP=37;DPB=37;DPRA=4.28571;EPP=11.6962;EPPR=66.2462;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=58.5455;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.848485;PAO=0;PQA=0;PQR=0;PRO=0;QA=161;QR=1339;RO=33;RPL=0;RPP=11.6962;RPPR=74.6689;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=32;SRP=66.2462;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:79:-7.49724,-0.60206,0 0/0:28:26,2:26:1056:2:82:0,-0.649162,-87.1385 0/0:1:1,0:1:41:0:0:0,-0.30103,-4.09457 0/0:6:6,0:6:242:0:0:0,-1.80618,-22.1564 dDocent_Contig_14752 180 . G A 69.0243 . AB=0.272727;ABP=32.6213;AC=2;AF=0.25;AN=8;AO=21;CIGAR=1X;DP=97;DPB=97;DPRA=7.75;EPP=48.6112;EPPR=159.471;GTI=0;LEN=1;MEANALT=1;MQM=17.8095;MQMR=30.0526;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=0;PAIREDR=0.342105;PAO=0;PQA=0;PQR=0;PRO=0;QA=836;QR=3003;RO=76;RPL=21;RPP=48.6112;RPPR=168.042;RPR=0;RUN=1;SAF=0;SAP=48.6112;SAR=21;SRF=1;SRP=159.471;SRR=75;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:38:26,12:26:1039:12:473:-8.29782,0,-28.5404 0/0:27:24,3:24:947:3:123:0,-2.53733,-54.0791 0/1:28:22,6:22:856:6:240:-0.361027,0,-41.2372 0/0:4:4,0:4:161:0:0:0,-1.20412,-9.88341 dDocent_Contig_14753 24 . C T 835.677 . AB=0.185185;ABP=49.4959;AC=0;AF=0;AN=8;AO=10;CIGAR=2X3M1X;DP=90;DPB=90;DPRA=0;EPP=24.725;EPPR=87.6977;GTI=0;LEN=1;MEANALT=3.5;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=0.974359;PAO=0;PQA=0;PQR=0;PRO=0;QA=387;QR=1534;RO=39;RPL=0;RPP=24.725;RPPR=87.6977;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:31:15,0,7,7:15:592:0,7,7:0,279,282:-18.7297,-23.2452,-71.9524,-0.269627,-48.9758,-46.8686,0,-48.7083,-25.7308,-46.6011 0|0:29:11,3,0,15:11:433:3,0,15:121,0,590:-45.206,-38.5414,-73.2567,-48.5173,-74.1598,-84.1351,0,-25.6343,-35.6107,-31.0952 0|0:23:11,3,3,6:11:432:3,3,6:113,108,246:-17.0139,-11.0704,-45.6968,-11.5252,-37.7961,-46.1486,0,-26.2882,-26.7411,-33.7394 0|0:7:2,3,0,2:2:77:3,0,2:122,0,82:-9.93005,-0.470845,-5.87746,-10.5321,-6.78055,-16.8477,-3.76263,0,-10.0761,-9.47407 dDocent_Contig_14754 107 . N G 66.4848 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=70;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:70:-6.6474,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_14755 51 . T A 136.751 . AB=0.833333;ABP=8.80089;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=25;DPB=25;DPRA=0.947368;EPP=13.8677;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=183;QR=812;RO=20;RPL=5;RPP=13.8677;RPPR=46.4397;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:6:1,5:1:41:5:183:-15.02,0,-2.28839 0/0:13:13,0:13:525:0:0:0,-3.91339,-47.5976 0/0:5:5,0:5:205:0:0:0,-1.50515,-18.835 0/0:1:1,0:1:41:0:0:0,-0.30103,-4.09457 dDocent_Contig_14756 22 . G A 2260.76 . AB=0.516556;ABP=3.36982;AC=4;AF=0.5;AN=8;AO=78;CIGAR=1X;DP=151;DPB=151;DPRA=0;EPP=172.385;EPPR=161.528;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.948718;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3085;QR=2906;RO=73;RPL=0;RPP=172.385;RPPR=161.528;RPR=78;RUN=1;SAF=78;SAP=172.385;SAR=0;SRF=73;SRP=161.528;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:8,5:8:322:5:200:-14.4659,0,-25.4332 0/1:64:30,34:30:1211:34:1339:-101.509,0,-89.9971 0/1:47:30,17:30:1172:17:670:-46.477,0,-91.6125 0/1:27:5,22:5:201:22:876:-71.0225,0,-10.3431 dDocent_Contig_14757 7 . C T 282.966 . AB=0.165289;ABP=120.754;AC=3;AF=0.375;AN=8;AO=22;CIGAR=1X;DP=158;DPB=158;DPRA=0;EPP=50.7827;EPPR=298.331;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=845;QR=5237;RO=136;RPL=0;RPP=50.7827;RPPR=298.331;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=136;SRP=298.331;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:44:39,5:39:1501:5:188:-4.03859,0,-122.116 0/1:54:43,11:43:1652:11:427:-22.5295,0,-132.687 0/0:37:35,2:35:1344:2:78:0,-3.73464,-113.842 0/1:23:19,4:19:740:4:152:-7.12551,0,-60.0073 dDocent_Contig_14759 16 . G T 112.323 . AB=0;ABP=0;AC=2;AF=0.25;AN=8;AO=3;CIGAR=1X;DP=38;DPB=38;DPRA=0.257143;EPP=9.52472;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.6;PAO=0;PQA=0;PQR=0;PRO=0;QA=114;QR=1380;RO=35;RPL=0;RPP=9.52472;RPPR=79.0118;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:114:-10.6301,-0.90309,0 0/0:6:6,0:6:233:0:0:0,-1.80618,-21.3387 0/0:16:16,0:16:634:0:0:0,-4.81648,-57.3934 0/0:13:13,0:13:513:0:0:0,-3.91339,-46.5149 dDocent_Contig_14761 63 . G A 462.36 . AB=0.278481;ABP=36.6819;AC=3;AF=0.375;AN=8;AO=22;CIGAR=1X;DP=81;DPB=81;DPRA=13.1667;EPP=50.7827;EPPR=131.127;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=826;QR=2198;RO=59;RPL=22;RPP=50.7827;RPPR=131.127;RPR=0;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=59;SRP=131.127;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:24,6:24:902:6:230:-12.0354,0,-72.4624 0/1:21:16,5:16:594:5:187:-10.8709,0,-47.4717 0/1:28:17,11:17:645:11:409:-28.7273,0,-49.9548 0/0:2:2,0:2:57:0:0:0,-0.60206,-5.41171 dDocent_Contig_14762 15 . G A 103.846 . AB=0.25;ABP=13.8677;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=69;DPB=69;DPRA=1.15625;EPP=16.0391;EPPR=139.813;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=238;QR=2506;RO=63;RPL=0;RPP=16.0391;RPPR=139.813;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=63;SRP=139.813;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:15:15,0:15:609:0:0:0,-4.51545,-55.1476 0/1:20:15,5:15:598:5:197:-12.0834,0,-48.1354 0/0:17:17,0:17:668:0:0:0,-5.11751,-60.4503 0/0:17:16,1:16:631:1:41:0,-1.02294,-53.0279 dDocent_Contig_14763 18 . C A 408.243 . AB=0.432432;ABP=4.47751;AC=3;AF=0.375;AN=8;AO=17;CIGAR=1X;DP=57;DPB=57;DPRA=0;EPP=39.9253;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=637;QR=1598;RO=40;RPL=0;RPP=39.9253;RPPR=89.8692;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:12,7:12:483:7:271:-19.0349,0,-38.1018 0/0:20:19,1:19:765:1:12:0,-4.82061,-67.9711 0/1:12:5,7:5:198:7:278:-21.7786,0,-14.5834 0/1:6:4,2:4:152:2:76:-5.40863,0,-12.2406 dDocent_Contig_14764 17 . A T 597.638 . AB=0.442308;ABP=4.51363;AC=3;AF=0.375;AN=8;AO=23;CIGAR=1X;DP=63;DPB=63;DPRA=1.57576;EPP=52.9542;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=0.608696;PAIREDR=0.75;PAO=0;PQA=0;PQR=0;PRO=0;QA=886;QR=1558;RO=40;RPL=0;RPP=52.9542;RPPR=89.8692;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:16,9:16:614:9:353:-24.6058,0,-48.0663 0/1:15:10,5:10:394:5:183:-12.3077,0,-31.3016 0/0:11:11,0:11:431:0:0:0,-3.31133,-39.1441 0/1:12:3,9:3:119:9:350:-28.2482,0,-7.48303 dDocent_Contig_14765 32 . T A 31.8387 . AB=0.2;ABP=10.8276;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X;DP=37;DPB=37;DPRA=1.11111;EPP=7.35324;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=80;QR=1410;RO=35;RPL=0;RPP=7.35324;RPPR=79.0118;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:8,2:8:315:2:80:-4.58149,0,-25.702 0/0:14:14,0:14:568:0:0:0,-4.21442,-51.4611 0/0:8:8,0:8:323:0:0:0,-2.40824,-29.4384 0/0:5:5,0:5:204:0:0:0,-1.50515,-18.744 dDocent_Contig_14766 151 . A G 105.448 . AB=0.294118;ABP=9.26925;AC=2;AF=0.25;AN=8;AO=5;CIGAR=1X;DP=24;DPB=24;DPRA=2.42857;EPP=13.8677;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=203;QR=759;RO=19;RPL=0;RPP=13.8677;RPPR=44.2683;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=44.2683;SRR=19;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:2:2,0:2:80:0:0:0,-0.60206,-7.59179 0/1:9:7,2:7:279:2:82:-5.07041,0,-22.7717 0/1:8:5,3:5:204:3:121:-8.87196,0,-16.3358 0/0:5:5,0:5:196:0:0:0,-1.50515,-18.0114 dDocent_Contig_14767 106 . N C 1307.71 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=44;CIGAR=2X;DP=44;DPB=44;DPRA=0;EPP=98.5551;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1432;QR=0;RO=0;RPL=0;RPP=98.5551;RPPR=0;RPR=44;RUN=1;SAF=0;SAP=98.5551;SAR=44;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:35:0,35:0:0:35:1142:-103.076,-10.5361,0 1|1:2:0,2:0:0:2:70:-6.6474,-0.60206,0 1|1:1:0,1:0:0:1:34:-3.39891,-0.30103,0 1|1:6:0,6:0:0:6:186:-17.0456,-1.80618,0 dDocent_Contig_14768 32 . G C 1364.83 . AB=0.65625;ABP=16.582;AC=5;AF=0.625;AN=8;AO=45;CIGAR=1X;DP=67;DPB=67;DPRA=0;EPP=100.727;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=53.7778;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.844444;PAIREDR=0.954545;PAO=0;PQA=0;PQR=0;PRO=0;QA=1782;QR=884;RO=22;RPL=0;RPP=100.727;RPPR=50.7827;RPR=45;RUN=1;SAF=45;SAP=100.727;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:11,18:11:437:18:706:-54.8174,0,-30.9539 0/1:21:5,16:5:202:16:639:-51.3302,0,-12.2402 0/1:14:6,8:6:245:8:314:-24.3126,0,-18.2151 1/1:3:0,3:0:0:3:123:-11.4205,-0.90309,0 dDocent_Contig_14769 131 . G T 451.781 . AB=0.311475;ABP=21.8416;AC=5;AF=0.625;AN=8;AO=22;CIGAR=1X;DP=64;DPB=64;DPRA=0;EPP=50.7827;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=751;QR=1418;RO=42;RPL=0;RPP=50.7827;RPPR=94.2121;RPR=22;RUN=1;SAF=0;SAP=50.7827;SAR=22;SRF=0;SRP=94.2121;SRR=42;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:17,11:17:568:11:372:-25.3775,0,-43.0065 0/1:25:21,4:21:717:4:139:-5.32694,0,-57.3228 0/1:8:4,4:4:133:4:135:-10.0752,0,-9.8904 1/1:3:0,3:0:0:3:105:-9.79616,-0.90309,0 dDocent_Contig_14770 63 . C T 74.4213 . AB=0.235294;ABP=13.3567;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=59;DPB=59;DPRA=19.3333;EPP=16.0391;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.0943;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.962264;PAO=0;PQA=0;PQR=0;PRO=0;QA=228;QR=2006;RO=53;RPL=6;RPP=16.0391;RPPR=118.098;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:13,4:13:493:4:151:-8.83945,0,-39.5977 0/0:22:21,1:21:805:1:39:0,-2.7261,-68.8779 0/0:19:18,1:18:676:1:38:0,-1.9223,-56.8275 0/0:1:1,0:1:32:0:0:0,-0.30103,-3.19931 dDocent_Contig_14771 44 . G A 34.9802 . AB=0.230769;ABP=11.1951;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=33;DPB=33;DPRA=1.3;EPP=9.52472;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.866667;PAO=0;PQA=0;PQR=0;PRO=0;QA=99;QR=1203;RO=30;RPL=0;RPP=9.52472;RPPR=68.1545;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 0/0:17:17,0:17:675:0:0:0,-5.11751,-61.0794 0/1:13:10,3:10:407:3:99:-5.32161,0,-33.077 0/0:3:3,0:3:121:0:0:0,-0.90309,-11.2802 dDocent_Contig_14772 63 . T C 71.1622 . AB=0.222222;ABP=15.074;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=62;DPB=62;DPRA=1.22727;EPP=11.6962;EPPR=126.784;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.789474;PAO=0;PQA=0;PQR=0;PRO=0;QA=154;QR=2036;RO=57;RPL=4;RPP=11.6962;RPPR=126.784;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:30:30,0:30:1044:0:0:0,-9.0309,-94.2572 0/1:18:14,4:14:510:4:154:-8.81505,0,-40.8178 0/0:11:10,0:10:371:0:0:0,-3.0103,-33.3505 0/0:3:3,0:3:111:0:0:0,-0.90309,-10.3536 dDocent_Contig_14773 39 . G A 238.401 . AB=0.236364;ABP=36.2141;AC=4;AF=0.5;AN=8;AO=13;CIGAR=1X;DP=55;DPB=55;DPRA=0;EPP=31.2394;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.97619;PAO=0;PQA=0;PQR=0;PRO=0;QA=514;QR=1667;RO=42;RPL=0;RPP=31.2394;RPPR=94.2121;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:13,2:13:522:2:78:-2.88733,0,-42.8119 0/1:12:7,5:7:277:5:201:-14.8582,0,-21.6869 0/1:18:15,3:15:591:3:123:-6.04625,0,-48.1079 0/1:10:7,3:7:277:3:112:-7.43249,0,-22.2869 dDocent_Contig_14774 15 . A G 306.156 . AB=0.207792;ABP=60.1172;AC=3;AF=0.375;AN=8;AO=16;CIGAR=1X;DP=103;DPB=103;DPRA=0.987179;EPP=37.7539;EPPR=191.928;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=645;QR=3422;RO=87;RPL=0;RPP=37.7539;RPPR=191.928;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=87;SRP=191.928;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:15,7:15:601:7:282:-19.1288,0,-47.8058 0/1:8:6,2:6:236:2:82:-5.37144,0,-19.2028 0/1:47:40,7:40:1565:7:281:-11.5133,0,-126.953 0/0:26:26,0:26:1020:0:0:0,-7.82678,-92.1035 dDocent_Contig_14775 44 . G T 197.575 . AB=0.363636;ABP=6.56362;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=45;DPB=45;DPRA=2.86957;EPP=20.3821;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.972973;PAO=0;PQA=0;PQR=0;PRO=0;QA=308;QR=1485;RO=37;RPL=0;RPP=20.3821;RPPR=83.3548;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:11,0:11:444:0:0:0,-3.31133,-40.316 0/1:22:14,8:14:560:8:308:-21.4563,0,-44.118 0/0:9:9,0:9:359:0:0:0,-2.70927,-32.6739 0/0:3:3,0:3:122:0:0:0,-0.90309,-11.3725 dDocent_Contig_14776 10 . G T 132.104 . AB=0.285714;ABP=11.386;AC=2;AF=0.25;AN=8;AO=6;CIGAR=1X;DP=50;DPB=50;DPRA=0.724138;EPP=16.0391;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=246;QR=1721;RO=44;RPL=0;RPP=16.0391;RPPR=98.5551;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:25:25,0:25:993:0:0:0,-7.52575,-89.6686 0/1:10:6,4:6:237:4:164:-12.1396,0,-18.69 0/1:11:9,2:9:345:2:82:-4.46835,0,-28.0915 0/0:4:4,0:4:146:0:0:0,-1.20412,-13.4956 dDocent_Contig_14778 96 . G C 705.725 . 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AB=0.447368;ABP=3.9246;AC=5;AF=0.625;AN=8;AO=18;CIGAR=1X;DP=39;DPB=39;DPRA=0;EPP=42.0968;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=720;QR=825;RO=21;RPL=18;RPP=42.0968;RPPR=48.6112;RPR=0;RUN=1;SAF=0;SAP=42.0968;SAR=18;SRF=0;SRP=48.6112;SRR=21;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:7,8:7:274:8:316:-24.2881,0,-20.5078 0/1:17:10,7:10:390:7:282:-20.6351,0,-30.3309 0/1:6:4,2:4:161:2:81:-5.87955,0,-13.0693 1/1:1:0,1:0:0:1:41:-4.09457,-0.30103,0 dDocent_Contig_14793 22 . T A 120.702 . AB=0.123711;ABP=122.307;AC=2;AF=0.25;AN=8;AO=16;CIGAR=1X;DP=240;DPB=240;DPRA=0;EPP=37.7539;EPPR=489.42;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=0.875;PAIREDR=0.84375;PAO=0;PQA=0;PQR=0;PRO=0;QA=633;QR=8993;RO=224;RPL=0;RPP=37.7539;RPPR=489.42;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=224;SRP=489.42;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:62:59,3:59:2386:3:121:0,-7.38366,-203.6 0/0:81:80,1:80:3212:1:41:0,-20.2889,-285.046 0/1:64:55,9:55:2197:9:363:-13.7677,0,-178.633 0/1:33:30,3:30:1198:3:108:-0.136704,0,-98.1575 dDocent_Contig_14797 44 . A T 205.754 . AB=0.32;ABP=10.0459;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=110;DPB=110;DPRA=0.882353;EPP=20.3821;EPPR=224.5;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=327;QR=3861;RO=102;RPL=0;RPP=20.3821;RPPR=224.5;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=102;SRP=224.5;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:54:54,0:54:2004:0:0:0,-16.2556,-180.59 0/1:25:17,8:17:634:8:327:-22.2744,0,-49.8537 0/0:22:22,0:22:876:0:0:0,-6.62266,-79.1476 0/0:9:9,0:9:347:0:0:0,-2.70927,-31.5875 dDocent_Contig_14798 119 . T G 565.021 . AB=0.462963;ABP=3.6537;AC=4;AF=0.5;AN=8;AO=25;CIGAR=1X;DP=54;DPB=54;DPRA=0;EPP=57.2971;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=57.44;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.96;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=893;QR=1014;RO=29;RPL=0;RPP=57.2971;RPPR=65.983;RPR=25;RUN=1;SAF=0;SAP=57.2971;SAR=25;SRF=0;SRP=65.983;SRR=29;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:7,3:7:248:3:110:-6.4461,0,-19.6542 0/1:16:10,6:10:338:6:219:-15.2478,0,-25.9302 0/1:21:8,13:8:286:13:459:-35.3219,0,-19.7638 0/1:7:4,3:4:142:3:105:-6.88428,0,-11.022 dDocent_Contig_14801 93 . T A 87.0004 . AB=0.2;ABP=14.7363;AC=4;AF=0.5;AN=8;AO=5;CIGAR=1X1M1X;DP=24;DPB=24;DPRA=0.809524;EPP=13.8677;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=172;QR=661;RO=19;RPL=5;RPP=13.8677;RPPR=44.2683;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:2:0,2:0:0:2:67:-6.36304,-0.60206,0 0|0:7:7,0:7:242:0:0:0,-2.10721,-22.1177 0|1:10:8,2:8:280:2:70:-3.6371,0,-22.5297 0|1:5:4,1:4:139:1:35:-1.99348,0,-11.3475 dDocent_Contig_14802 66 . T C 32.7045 . AB=0.5;ABP=3.0103;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X;DP=54;DPB=54;DPRA=0.24;EPP=7.35324;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.711538;PAO=0;PQA=0;PQR=0;PRO=0;QA=65;QR=1899;RO=52;RPL=1;RPP=3.0103;RPPR=16.5402;RPR=1;RUN=1;SAF=1;SAP=3.0103;SAR=1;SRF=35;SRP=16.5402;SRR=17;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6509 0/0:14:14,0:14:514:0:0:0,-4.21442,-46.5972 0/0:18:18,0:18:665:0:0:0,-5.41854,-60.1799 0/1:4:2,2:2:72:2:65:-4.96917,0,-5.63252 dDocent_Contig_14803 10 . G T 63.8903 . AB=0.131579;ABP=92.6121;AC=4;AF=0.5;AN=8;AO=10;CIGAR=1X3M1X;DP=76;DPB=76;DPRA=0;EPP=24.725;EPPR=146.327;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.9;PAIREDR=0.833333;PAO=0;PQA=0;PQR=0;PRO=0;QA=383;QR=2590;RO=66;RPL=0;RPP=24.725;RPPR=146.327;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=66;SRP=146.327;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:25:21,4:21:831:4:156:-6.89137,0,-67.5821 0|1:7:6,1:6:242:1:39:-1.78935,0,-20.0503 0|1:27:24,3:24:927:3:117:-2.78148,0,-75.6106 0|1:17:15,2:15:590:2:71:-1.62439,0,-48.3223 dDocent_Contig_14804 22 . T C 258.389 . AB=0.2;ABP=18.6449;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X3M1X;DP=43;DPB=43;DPRA=6.66667;EPP=11.6962;EPPR=65.983;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=59.6897;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=161;QR=1118;RO=29;RPL=0;RPP=11.6962;RPPR=65.983;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:11:5,0,6:5:196:0,6:0,227:-17.4758,-18.9809,-35.0784,0,-16.4826,-14.6764 0|0:9:7,0,2:7:280:0,2:0,78:-4.69403,-6.80124,-29.8743,0,-23.4649,-22.8629 0|1:20:14,4,2:14:523:4,2:161,77:-9.0665,0,-41.5982,-6.96522,-36.4794,-49.1531 0|0:3:3,0,0:3:119:0,0:0,0:0,-0.90309,-11.0954,-0.90309,-11.0954,-11.0954 dDocent_Contig_14805 8 . A G 44.4882 . AB=0.5;ABP=3.0103;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X1M1X;DP=46;DPB=46;DPRA=0.285714;EPP=7.35324;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=48;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=75;QR=1551;RO=41;RPL=0;RPP=7.35324;RPPR=92.0407;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:4:2,2,0:2:78:2,0:75,0:-5.84673,0,-6.19935,-6.44879,-6.80141,-12.8698 0|0:9:9,0,0:9:341:0,0:0,0:0,-2.70927,-31.046,-2.70927,-31.046,-31.046 0|0:20:17,0,2:17:658:0,2:0,81:0,-5.11751,-59.2813,-2.43836,-56.4886,-55.8865 0|0:13:13,0,0:13:474:0,0:0,0:0,-3.91339,-42.9945,-3.91339,-42.9945,-42.9945 dDocent_Contig_14806 20 . G T 9488.43 . AB=0.0288462;ABP=1005.65;AC=0;AF=0;AN=8;AO=15;CIGAR=2X7M;DP=520;DPB=520;DPRA=0;EPP=35.5824;EPPR=267.93;GTI=0;LEN=1;MEANALT=6.5;MQM=60;MQMR=60;NS=4;NUMALT=4;ODDS=0;PAIRED=0;PAIREDR=0.180328;PAO=0;PQA=0;PQR=0;PRO=0;QA=598;QR=4813;RO=122;RPL=0;RPP=35.5824;RPPR=267.93;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=122;SRP=267.93;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:147:44,0,14,4,73:44:1745:0,14,4,73:0,529,161,2933:-228.449,-241.694,-385.335,-198.347,-341.986,-337.772,-228.424,-372.065,-328.717,-370.861,0,-143.645,-100.298,-130.375,-121.67 0|0:187:41,2,14,8,115:41:1623:2,14,8,115:81,557,318,4571:-363.951,-369.622,-502.6,-330.434,-457.343,-459.799,-350.112,-477.021,-437.832,-481.283,0,-126.909,-87.7206,-107.398,-98.9616 0|0:150:33,2,15,1,93:33:1287:2,15,1,93:81,596,40,3718:-296.304,-299.558,-404.74,-257.172,-356.276,-358.439,-302.943,-402.047,-359.66,-408.425,0,-99.1015,-56.7133,-102.486,-77.7853 0|0:36:4,3,7,2,18:4:158:3,7,2,18:121,274,79,719:-67.5382,-58.7674,-70.8659,-46.2158,-49.2422,-57.1098,-62.2415,-65.2681,-52.7163,-74.6409,-9.52443,-12.5504,0,-16.0254,-17.108 dDocent_Contig_14807 27 . G A 96.082 . AB=0.142857;ABP=103.829;AC=4;AF=0.5;AN=8;AO=13;CIGAR=1X;DP=91;DPB=91;DPRA=0;EPP=31.2394;EPPR=172.385;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.987179;PAO=0;PQA=0;PQR=0;PRO=0;QA=476;QR=3060;RO=78;RPL=0;RPP=31.2394;RPPR=172.385;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=78;SRP=172.385;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:19,3:19:730:3:116:-4.19362,0,-59.3851 0/1:46:41,5:41:1634:5:173:-2.04965,0,-133.446 0/1:19:15,4:15:576:4:146:-7.77317,0,-46.4553 0/1:4:3,1:3:120:1:41:-2.89045,0,-9.98319 dDocent_Contig_14808 12 . A G 304.082 . AB=0.315789;ABP=14.2105;AC=1;AF=0.166667;AN=6;AO=12;CIGAR=1X;DP=47;DPB=47;DPRA=8.44444;EPP=29.068;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=478;QR=1388;RO=35;RPL=0;RPP=29.068;RPPR=79.0118;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 0/1:38:26,12:26:1028:12:478:-31.9304,0,-81.3711 0/0:8:8,0:8:319:0:0:0,-2.40824,-29.0774 0/0:1:1,0:1:41:0:0:0,-0.30103,-4.09457 dDocent_Contig_14809 45 . C A 3109.97 . AB=0.1;ABP=225.369;AC=4;AF=0.5;AN=8;AO=16;CIGAR=1X3M;DP=173;DPB=173;DPRA=0;EPP=37.7539;EPPR=115.927;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=616;QR=2037;RO=52;RPL=0;RPP=37.7539;RPPR=115.927;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:40:12,25,3:12:477:25,3:951,112:-74.3774,0,-31.765,-68.8238,-30.1288,-107.198 0|1:56:14,33,9:14:538:33,9:1313,343:-103.908,0,-34.2302,-79.9957,-16.0347,-121.445 0|1:64:20,39,4:20:784:39,4:1517,161:-118.632,0,-52.7254,-111.382,-51.1948,-174.651 0|1:13:6,7,0:6:238:7,0:278,0:-21.4768,0,-17.8805,-23.283,-19.9877,-42.8742 dDocent_Contig_14810 124 . G A 204.453 . AB=0.37037;ABP=6.95112;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=33;DPB=33;DPRA=2.25;EPP=24.725;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=349;QR=804;RO=23;RPL=0;RPP=24.725;RPPR=52.9542;RPR=10;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=52.9542;SRR=23;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:6:6,0:6:210:0:0:0,-1.80618,-19.2425 0/1:19:13,6:13:454:6:209:-13.4315,0,-35.4737 0/1:8:4,4:4:140:4:140:-10.5367,0,-10.5367 ./.:.:.:.:.:.:.:. dDocent_Contig_14811 177 . G A 416.706 . AB=0.444444;ABP=3.9754;AC=3;AF=0.375;AN=8;AO=16;CIGAR=1X;DP=40;DPB=40;DPRA=3;EPP=37.7539;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=631;QR=936;RO=24;RPL=16;RPP=37.7539;RPPR=55.1256;RPR=0;RUN=1;SAF=0;SAP=37.7539;SAR=16;SRF=0;SRP=55.1256;SRR=24;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:7:4,3:4:151:3:118:-8.89437,0,-11.8492 0/1:13:10,3:10:396:3:116:-6.90212,0,-32.0789 0/0:4:4,0:4:146:0:0:0,-1.20412,-13.4909 0/1:16:6,10:6:243:10:397:-31.272,0,-17.4317 dDocent_Contig_14813 19 . A G 76.2642 . AB=0;ABP=0;AC=2;AF=0.25;AN=8;AO=2;CIGAR=2X;DP=45;DPB=45;DPRA=0.139535;EPP=7.35324;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.860465;PAO=0;PQA=0;PQR=0;PRO=0;QA=74;QR=1709;RO=43;RPL=0;RPP=7.35324;RPPR=96.3836;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:2:0,2:0:0:2:74:-7.02402,-0.60206,0 0|0:4:4,0:4:158:0:0:0,-1.20412,-14.5994 0|0:29:29,0:29:1154:0:0:0,-8.72987,-104.145 0|0:10:10,0:10:397:0:0:0,-3.0103,-36.0881 dDocent_Contig_14814 171 . T C 181.385 . AB=0.296296;ABP=12.7417;AC=2;AF=0.25;AN=8;AO=8;CIGAR=1X;DP=31;DPB=31;DPRA=6.75;EPP=20.3821;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=321;QR=895;RO=23;RPL=8;RPP=20.3821;RPPR=52.9542;RPR=0;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=52.9542;SRR=23;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:11,6:11:424:6:239:-16.7664,0,-33.3898 0/1:10:8,2:8:320:2:82:-4.76938,0,-26.1542 0/0:2:2,0:2:70:0:0:0,-0.60206,-6.64622 0/0:2:2,0:2:81:0:0:0,-0.60206,-7.68573 dDocent_Contig_14815 17 . T G 9313.08 . AB=0.76257;ABP=217.392;AC=6;AF=0.75;AN=8;AO=273;CIGAR=1X3M;DP=358;DPB=358;DPRA=0;EPP=595.822;EPPR=96.3836;GTI=0;LEN=1;MEANALT=2.25;MQM=59.9121;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=10860;QR=1588;RO=43;RPL=0;RPP=595.822;RPPR=96.3836;RPR=273;RUN=1;SAF=273;SAP=595.822;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:138:12,25,101:12:442:25,101:1003,4000:-372.103,-293.072,-321.685,-46.5334,0,-52.2602 0|1:138:15,8,114:15:568:8,114:320,4555:-370.592,-348.748,-392.901,0,-20.1855,-12.2352 0|1:62:13,2,47:13:471:2,47:79,1867:-149.784,-147.196,-185.034,0,-31.9134,-24.2703 1|1:20:3,6,11:3:107:6,11:240,438:-46.2268,-27.3589,-34.2649,-11.0924,0,-16.4877 dDocent_Contig_14816 24 . G A 141.967 . AB=0.22449;ABP=35.3165;AC=2;AF=0.25;AN=8;AO=16;CIGAR=1M9I2M1X;DP=117;DPB=153;DPRA=0;EPP=37.7539;EPPR=220.158;GTI=0;LEN=1;MEANALT=1.25;MQM=33;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=632;QR=3990;RO=100;RPL=0;RPP=37.7539;RPPR=220.158;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=100;SRP=220.158;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:47:44,3:44:1755:3:119:0,-5.14662,-149.169 0|1:38:31,7:31:1238:7:280:-9.16621,0,-100.257 0|0:21:18,2:18:714:2:80:0,-0.267788,-58.4452 0|1:11:7,4:7:283:4:153:-8.42782,0,-22.5323 dDocent_Contig_14817 34 . A G 66.6895 . AB=0.235294;ABP=13.3567;AC=2;AF=0.25;AN=8;AO=4;CIGAR=1X;DP=45;DPB=45;DPRA=0.607143;EPP=11.6962;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=160;QR=1655;RO=41;RPL=0;RPP=11.6962;RPPR=92.0407;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:5:3,2:3:123:2:81:-6.18058,0,-9.95964 0/0:8:8,0:8:324:0:0:0,-2.40824,-29.5294 0/1:12:10,2:10:404:2:79:-3.88488,0,-33.1083 0/0:20:20,0:20:804:0:0:0,-6.0206,-72.6732 dDocent_Contig_14818 181 . A G 91.2512 . AB=0.193548;ABP=28.2974;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=36;DPB=36;DPRA=3.1;EPP=16.0391;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=219;QR=1116;RO=30;RPL=6;RPP=16.0391;RPPR=68.1545;RPR=0;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=68.1545;SRR=30;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:14,5:14:527:5:178:-10.6436,0,-42.0536 ./.:.:.:.:.:.:.:. 0/1:12:11,1:11:401:1:41:-0.482207,0,-32.8199 0/0:5:5,0:5:188:0:0:0,-1.50515,-17.2839 dDocent_Contig_14819 25 . C T 83.6972 . AB=0.333333;ABP=5.9056;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=54;DPB=54;DPRA=0.857143;EPP=11.6962;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=0.74;PAO=0;PQA=0;PQR=0;PRO=0;QA=148;QR=1964;RO=50;RPL=0;RPP=11.6962;RPPR=111.584;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:18:18,0:18:722:0:0:0,-5.41854,-65.3058 0/0:7:7,0:7:260:0:0:0,-2.10721,-23.7434 0/0:17:17,0:17:657:0:0:0,-5.11751,-59.454 0/1:12:8,4:8:325:4:148:-10.0687,0,-26.0073 dDocent_Contig_14820 23 . C T 63.6168 . AB=0.157895;ABP=41.6397;AC=4;AF=0.5;AN=8;AO=6;CIGAR=1X3M1X2M1X;DP=38;DPB=38;DPRA=0;EPP=16.0391;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.833333;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=239;QR=1256;RO=32;RPL=0;RPP=16.0391;RPPR=72.4974;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:12:9,3:9:354:3:119:-7.48303,0,-28.6087 0|1:9:8,1:8:313:1:40:-1.28641,0,-25.8228 0|1:11:10,1:10:394:1:40:-0.684349,0,-32.5071 0|1:6:5,1:5:195:1:40:-2.1895,0,-16.1157 dDocent_Contig_14821 85 . A T 86.1224 . AB=0.277778;ABP=10.7311;AC=2;AF=0.25;AN=8;AO=5;CIGAR=1X;DP=26;DPB=26;DPRA=2.25;EPP=13.8677;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.952381;PAO=0;PQA=0;PQR=0;PRO=0;QA=183;QR=741;RO=21;RPL=5;RPP=13.8677;RPPR=48.6112;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:6:6,0:6:209:0:0:0,-1.80618,-19.1505 0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672 0/1:7:6,1:6:208:1:36:-1.49107,0,-16.9515 0/1:11:7,4:7:252:4:147:-10.2786,0,-19.7174 dDocent_Contig_14822 112 . C T 62.3952 . AB=0.151515;ABP=72.629;AC=3;AF=0.375;AN=8;AO=14;CIGAR=1X;DP=105;DPB=105;DPRA=0;EPP=33.4109;EPPR=200.614;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=51.033;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.604396;PAO=0;PQA=0;PQR=0;PRO=0;QA=435;QR=2908;RO=91;RPL=0;RPP=33.4109;RPPR=200.614;RPR=14;RUN=1;SAF=0;SAP=33.4109;SAR=14;SRF=0;SRP=200.614;SRR=91;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:26,3:26:876:3:95:-0.134507,0,-66.0437 0/0:39:35,4:35:1108:4:123:0,-0.365343,-87.627 0/1:24:21,3:21:653:3:89:-1.08073,0,-47.5724 0/1:13:9,4:9:271:4:128:-7.92372,0,-20.5384 dDocent_Contig_14823 15 . G A 35.7864 . AB=0.25;ABP=7.35324;AC=1;AF=0.25;AN=4;AO=2;CIGAR=1X;DP=33;DPB=33;DPRA=0.32;EPP=7.35324;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=1199;RO=31;RPL=0;RPP=7.35324;RPPR=70.3259;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:8:6,2:6:234:2:81:-5.27749,0,-19.0227 0/0:25:25,0:25:965:0:0:0,-7.52575,-87.1563 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_14824 7 . C T 61.6677 . AB=0.173913;ABP=24.253;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=74;DPB=74;DPRA=1.35294;EPP=11.6962;EPPR=152.842;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=156;QR=2635;RO=69;RPL=0;RPP=11.6962;RPPR=152.842;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=69;SRP=152.842;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:18,4:18:673:4:156:-7.5647,0,-54.0737 0/0:32:32,0:32:1233:0:0:0,-9.63296,-111.264 0/0:12:12,0:12:458:0:0:0,-3.61236,-41.5685 0/0:7:7,0:7:271:0:0:0,-2.10721,-24.7563 dDocent_Contig_14825 8 . A C 66.5269 . AB=0.116279;ABP=112.998;AC=2;AF=0.25;AN=8;AO=10;CIGAR=1X2M1X;DP=132;DPB=132;DPRA=1.86957;EPP=24.725;EPPR=267.93;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=391;QR=4754;RO=122;RPL=0;RPP=24.725;RPPR=267.93;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=122;SRP=267.93;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:77:70,7:70:2736:7:273:-1.75735,0,-223.224 0|0:17:17,0:17:667:0:0:0,-5.11751,-60.3652 0|0:29:29,0:29:1123:0:0:0,-8.72987,-101.366 0|1:9:6,3:6:228:3:118:-8.29362,0,-18.1729 dDocent_Contig_14826 21 . T A 76.8283 . AB=0.5;ABP=3.0103;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=24;DPB=24;DPRA=1;EPP=9.52472;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=120;QR=819;RO=21;RPL=0;RPP=9.52472;RPPR=48.6112;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:6:6,0:6:226:0:0:0,-1.80618,-20.6971 0/0:2:2,0:2:75:0:0:0,-0.60206,-7.11959 0/0:10:10,0:10:395:0:0:0,-3.0103,-35.9088 0/1:6:3,3:3:123:3:120:-9.38151,0,-9.65861 dDocent_Contig_14827 20 . T A 50.4076 . AB=0.153846;ABP=30.0702;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=66;DPB=66;DPRA=1.3;EPP=11.6962;EPPR=97.7145;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.871;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.451613;PAO=0;PQA=0;PQR=0;PRO=0;QA=159;QR=2278;RO=62;RPL=0;RPP=11.6962;RPPR=137.642;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=57;SRP=97.7145;SRR=5;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:27:27,0:27:1022:0:0:0,-8.12781,-92.2854 0/1:26:22,4:22:774:4:159:-6.86466,0,-62.1335 0/0:13:13,0:13:482:0:0:0,-3.91339,-43.7218 ./.:.:.:.:.:.:.:. dDocent_Contig_14828 112 . A T 3821.98 . AB=0.0740741;ABP=88.0998;AC=0;AF=0;AN=8;AO=4;CIGAR=1X3M1X5M;DP=315;DPB=315;DPRA=0;EPP=11.6962;EPPR=72.4974;GTI=0;LEN=1;MEANALT=8;MQM=39;MQMR=59.5312;NS=4;NUMALT=6;ODDS=0;PAIRED=1;PAIREDR=0.90625;PAO=0;PQA=0;PQR=0;PRO=0;QA=137;QR=996;RO=32;RPL=0;RPP=11.6962;RPPR=72.4974;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=72.4974;SRR=32;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:75:7,0,9,10,8,1,33:7:194:0,9,10,8,1,33:0,293,332,246,36,1136:-94.1325,-96.2397,-111.588,-84.435,-99.781,-97.0717,-75.6156,-90.9629,-79.1595,-87.9526,-78.6758,-94.0235,-82.219,-73.3995,-91.6152,-93.3013,-108.649,-96.8427,-88.0244,-91.085,-108.348,-5.27825,-20.6329,-8.8304,0,-3.06077,-17.6928,-10.6989 0|0:105:16,0,13,19,4,2,46:16:514:0,13,19,4,2,46:0,451,624,123,43,1582:-122.14,-126.956,-168.386,-110.023,-151.451,-147.537,-87.8435,-129.274,-112.343,-123.554,-118.131,-159.562,-142.627,-120.449,-158.357,-123.919,-165.349,-148.413,-126.237,-156.524,-164.747,0,-41.4504,-24.5197,-2.32686,-32.6233,-38.4128,-27.6031 0|0:81:3,0,17,20,8,3,28:3:95:0,17,20,8,3,28:0,569,676,249,108,936:-107.937,-108.84,-116.487,-87.7066,-95.3526,-90.2351,-67.2674,-74.9147,-53.7929,-68.8941,-90.7335,-98.3805,-77.2492,-56.8078,-95.9723,-100.143,-107.79,-86.6554,-66.2161,-89.6825,-106.886,-33.94,-41.5897,-20.4607,0,-23.4765,-32.8884,-33.1609 0|0:54:6,4,8,1,4,3,25:6:193:4,8,1,4,3,25:137,263,35,113,108,838:-65.3855,-56.5188,-70.879,-56.9193,-61.8098,-70.0723,-65.0441,-69.9355,-70.3335,-80.3066,-59.3107,-64.2021,-64.602,-72.7267,-73.67,-58.4598,-63.3515,-63.7501,-71.8765,-66.1429,-73.121,0,-4.89594,-5.31265,-13.4281,-7.69315,-6.83784,-8.05086 dDocent_Contig_14829 156 . A G 117.432 . AB=0.26087;ABP=14.4341;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=24;DPB=24;DPRA=11.5;EPP=16.0391;EPPR=33.8935;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.7222;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.944444;PAO=0;PQA=0;PQR=0;PRO=0;QA=230;QR=683;RO=18;RPL=0;RPP=16.0391;RPPR=33.8935;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=42.0968;SRR=18;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:9,1:9:346:1:40:-0.985379,0,-28.4765 0/1:13:8,5:8:306:5:190:-13.5525,0,-23.9864 0/0:1:1,0:1:31:0:0:0,-0.30103,-3.09945 ./.:.:.:.:.:.:.:. dDocent_Contig_14830 18 . T A 231.901 . AB=0.321429;ABP=10.7656;AC=2;AF=0.25;AN=8;AO=9;CIGAR=1X;DP=35;DPB=35;DPRA=4;EPP=22.5536;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=367;QR=973;RO=26;RPL=0;RPP=22.5536;RPPR=59.4686;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:18,3:18:673:3:122:-5.05086,0,-54.5779 0/1:7:1,6:1:29:6:245:-20.3223,0,-0.792446 0/0:1:1,0:1:40:0:0:0,-0.30103,-3.99568 0/0:6:6,0:6:231:0:0:0,-1.80618,-21.1576 dDocent_Contig_14831 11 . A G 57.2453 . AB=0.16129;ABP=33.9012;AC=2;AF=0.25;AN=8;AO=5;CIGAR=1X;DP=71;DPB=71;DPRA=0.775;EPP=13.8677;EPPR=146.327;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=196;QR=2642;RO=66;RPL=0;RPP=13.8677;RPPR=146.327;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=66;SRP=146.327;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:22,4:22:867:4:159:-6.86517,0,-70.5128 0/0:22:22,0:22:881:0:0:0,-6.62266,-79.5939 0/1:5:4,1:4:164:1:37:-2.19268,0,-13.6447 0/0:18:18,0:18:730:0:0:0,-5.41854,-66.0239 dDocent_Contig_14833 107 . N A 270.153 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=9;CIGAR=1X;DP=9;DPB=9;DPRA=0;EPP=22.5536;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=51.7778;MQMR=0;NS=3;NUMALT=1;ODDS=1.69407e-21;PAIRED=0.777778;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=308;QR=0;RO=0;RPL=0;RPP=22.5536;RPPR=0;RPR=9;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:105:-9.79609,-0.90309,0 1/1:2:0,2:0:0:2:70:-4.31854,-0.60206,0 1/1:4:0,4:0:0:4:133:-12.2982,-1.20412,0 dDocent_Contig_14834 43 . G A 280.685 . AB=0.454545;ABP=3.40511;AC=1;AF=0.125;AN=8;AO=10;CIGAR=1X;DP=52;DPB=52;DPRA=2.2;EPP=24.725;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=397;QR=1615;RO=42;RPL=0;RPP=24.725;RPPR=94.2121;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:12,10:12:478:10:397:-29.4663,0,-36.7473 0/0:21:21,0:21:775:0:0:0,-6.32163,-70.0484 0/0:5:5,0:5:200:0:0:0,-1.50515,-18.3795 0/0:4:4,0:4:162:0:0:0,-1.20412,-14.967 dDocent_Contig_14837 73 . T A 45.1685 . AB=0.190476;ABP=20.4855;AC=2;AF=0.5;AN=4;AO=4;CIGAR=1X;DP=21;DPB=21;DPRA=0;EPP=11.6962;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=0.25;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=153;QR=661;RO=17;RPL=4;RPP=11.6962;RPPR=39.9253;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:12,2:12:463:2:78:-3.18888,0,-37.8061 ./.:.:.:.:.:.:.:. 0/1:7:5,2:5:198:2:75:-5.01289,0,-16.0905 ./.:.:.:.:.:.:.:. dDocent_Contig_14838 113 . T C 200.994 . AB=0.454545;ABP=3.40511;AC=3;AF=0.375;AN=8;AO=11;CIGAR=1X;DP=35;DPB=35;DPRA=0;EPP=26.8965;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.454545;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=377;QR=799;RO=24;RPL=0;RPP=26.8965;RPPR=55.1256;RPR=11;RUN=1;SAF=0;SAP=26.8965;SAR=11;SRF=0;SRP=55.1256;SRR=24;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:9,3:9:286:3:104:-6.09073,0,-22.437 0/0:13:12,1:12:412:1:32:0,-0.714077,-34.2109 0/1:2:1,1:1:31:1:34:-2.79685,0,-2.49739 0/1:8:2,6:2:70:6:207:-16.56,0,-4.23916 dDocent_Contig_14839 28 . A T 1770.17 . AB=0.622222;ABP=8.84915;AC=5;AF=0.625;AN=8;AO=54;CIGAR=1X;DP=71;DPB=71;DPRA=0;EPP=120.27;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=0.962963;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2162;QR=684;RO=17;RPL=0;RPP=120.27;RPPR=39.9253;RPR=54;RUN=1;SAF=54;SAP=120.27;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:26:0,26:0:0:26:1029:-92.8995,-7.82678,0 0/1:23:6,17:6:236:17:684:-54.9648,0,-14.6862 0/1:7:3,4:3:122:4:163:-12.9512,0,-9.26528 0/1:15:8,7:8:326:7:286:-21.5994,0,-25.1942 dDocent_Contig_14841 67 . C T 127.828 . AB=0.272727;ABP=17.8158;AC=2;AF=0.25;AN=8;AO=9;CIGAR=1X;DP=47;DPB=47;DPRA=2.35714;EPP=22.5536;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.921053;PAO=0;PQA=0;PQR=0;PRO=0;QA=283;QR=1489;RO=38;RPL=9;RPP=22.5536;RPPR=85.5263;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:7:7,0:7:275:0:0:0,-2.10721,-25.1173 0/1:21:18,3:18:705:3:113:-4.21734,0,-57.4519 0/1:12:6,6:6:225:6:170:-11.9627,0,-16.9934 0/0:7:7,0:7:284:0:0:0,-2.10721,-25.934 dDocent_Contig_14843 42 . G A 279.855 . AB=0.157895;ABP=22.325;AC=4;AF=0.5;AN=8;AO=10;CIGAR=1X;DP=44;DPB=44;DPRA=0.481481;EPP=24.725;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=399;QR=1344;RO=34;RPL=0;RPP=24.725;RPPR=76.8404;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:7:0,7:0:0:7:276:-25.2093,-2.10721,0 0/0:18:18,0:18:704:0:0:0,-5.41854,-63.6835 0/1:4:3,1:3:117:1:41:-2.89045,0,-9.70579 0/1:15:13,2:13:523:2:82:-3.26423,0,-42.9017 dDocent_Contig_14844 208 . G A 38.7311 . AB=0.12;ABP=65.7224;AC=3;AF=0.375;AN=8;AO=6;CIGAR=1X;DP=66;DPB=66;DPRA=1.04167;EPP=16.0391;EPPR=124.758;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.7;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.983333;PAO=0;PQA=0;PQR=0;PRO=0;QA=239;QR=2201;RO=60;RPL=0;RPP=16.0391;RPPR=124.758;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=133.299;SRR=60;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:16:16,0:16:606:0:0:0,-4.81648,-54.8683 0/1:30:26,4:26:962:4:157:-5.47628,0,-77.8541 0/1:13:12,1:12:414:1:41:-0.181177,0,-33.6755 0/1:7:6,1:6:219:1:41:-1.98736,0,-17.8475 dDocent_Contig_14845 64 . A T 565.386 . AB=0.362069;ABP=12.5947;AC=2;AF=0.25;AN=8;AO=24;CIGAR=1X;DP=107;DPB=107;DPRA=11.5556;EPP=55.1256;EPPR=183.243;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=969;QR=3280;RO=83;RPL=24;RPP=55.1256;RPPR=183.243;RPR=0;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=83;SRP=183.243;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:38:27,11:27:1082:11:447:-29.1469,0,-86.223 0/0:46:43,3:43:1718:3:117:0,-2.93755,-143.93 0/1:20:10,10:10:360:10:405:-30.7894,0,-26.7082 0/0:3:3,0:3:120:0:0:0,-0.90309,-11.1879 dDocent_Contig_14847 111 . A T 30.9877 . AB=0.15;ABP=24.2907;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X2M1X2M3X2M2X;DP=50;DPB=50;DPRA=2;EPP=9.52472;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=116;QR=1490;RO=46;RPL=0;RPP=9.52472;RPPR=102.898;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=102.898;SRR=46;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:21:21,0:21:674:0:0:0,-6.32163,-60.9644 0|1:20:17,3:17:548:3:116:-4.7971,0,-43.6078 0|0:6:6,0:6:201:0:0:0,-1.80618,-18.4195 0|0:3:2,0:2:67:0:0:0,-0.60206,-6.02492 dDocent_Contig_14848 30 . T C 81.3281 . AB=0.172414;ABP=30.0414;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=53;DPB=53;DPRA=3.625;EPP=13.8677;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=202;QR=1900;RO=48;RPL=0;RPP=13.8677;RPPR=107.241;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:15:15,0:15:605:0:0:0,-4.51545,-54.7885 0/1:29:24,5:24:945:5:202:-9.83162,0,-76.6213 0/0:6:6,0:6:228:0:0:0,-1.80618,-20.876 0/0:3:3,0:3:122:0:0:0,-0.90309,-11.3725 dDocent_Contig_14850 8 . A G 287.775 . AB=0.133333;ABP=55.5599;AC=1;AF=0.125;AN=8;AO=6;CIGAR=2X1M1X;DP=64;DPB=64;DPRA=0.789474;EPP=16.0391;EPPR=100.727;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=235;QR=1753;RO=45;RPL=0;RPP=16.0391;RPPR=100.727;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:18:10,2,5:10:391:2,5:79,196:-13.104,-9.61288,-41.1561,0,-25.6409,-30.6372 0|1:18:15,3,0:15:582:3,0:117,0:-5.49167,0,-47.3031,-10.0071,-48.2062,-57.824 0|0:19:17,0,1:17:666:0,1:0,41:0,-5.11751,-59.8725,-1.72848,-56.4875,-56.1865 0|0:9:3,1,5:3:114:1,5:39,200:-15.5798,-13.2786,-22.3196,0,-6.13359,-7.83681 dDocent_Contig_14855 41 . T C 43.4731 . AB=0.157895;ABP=22.325;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=84;DPB=84;DPRA=0.876923;EPP=9.52472;EPPR=178.9;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.975309;PAO=0;PQA=0;PQR=0;PRO=0;QA=123;QR=3254;RO=81;RPL=0;RPP=9.52472;RPPR=178.9;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=81;SRP=178.9;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:16,3:16:638:3:123:-5.74522,0,-52.0312 0/0:42:42,0:42:1690:0:0:0,-12.6433,-152.322 0/0:17:17,0:17:683:0:0:0,-5.11751,-61.7983 0/0:6:6,0:6:243:0:0:0,-1.80618,-22.2482 dDocent_Contig_14856 7 . C G 110.374 . AB=0.173077;ABP=51.2838;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=56;DPB=56;DPRA=6.5;EPP=22.5536;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=328;QR=1806;RO=47;RPL=0;RPP=22.5536;RPPR=105.07;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:33:27,6:27:1035:6:230:-11.1329,0,-83.5244 0/1:19:16,3:16:615:3:98:-3.4218,0,-49.9698 0/0:4:4,0:4:156:0:0:0,-1.20412,-14.4173 ./.:.:.:.:.:.:.:. dDocent_Contig_14857 9 . A T 1161.84 . AB=0.145695;ABP=661.585;AC=3;AF=0.375;AN=8;AO=105;CIGAR=1X;DP=812;DPB=812;DPRA=0;EPP=222.412;EPPR=1518.7;GTI=0;LEN=1;MEANALT=1.5;MQM=59.5048;MQMR=59.9771;NS=4;NUMALT=1;ODDS=0;PAIRED=0.533333;PAIREDR=0.525788;PAO=0;PQA=0;PQR=0;PRO=0;QA=4037;QR=26637;RO=698;RPL=0;RPP=231.015;RPPR=1518.7;RPR=105;RUN=1;SAF=104;SAP=222.412;SAR=1;SRF=698;SRP=1518.7;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:208:184,17:184:7019:17:651:0,-1.96952,-572.66 0/1:210:176,34:176:6756:34:1312:-55.1505,0,-544.639 0/1:277:238,37:238:9078:37:1428:-45.6227,0,-733.593 0/1:117:100,17:100:3784:17:646:-20.8087,0,-305.449 dDocent_Contig_14858 63 . G A 332.148 . AB=0.214286;ABP=22.8638;AC=6;AF=0.75;AN=8;AO=13;CIGAR=1X;DP=35;DPB=35;DPRA=0;EPP=31.2394;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=0.461538;PAIREDR=0.909091;PAO=0;PQA=0;PQR=0;PRO=0;QA=480;QR=854;RO=22;RPL=13;RPP=31.2394;RPPR=50.7827;RPR=0;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:5,4:5:198:4:158:-11.8914,0,-15.4865 0/1:19:17,2:17:656:2:78:-1.68373,0,-53.6477 1/1:1:0,1:0:0:1:38:-3.79727,-0.30103,0 1/1:6:0,6:0:0:6:206:-18.874,-1.80618,0 dDocent_Contig_14859 186 . A C 206.092 . AB=0.4;ABP=4.74748;AC=2;AF=0.25;AN=8;AO=8;CIGAR=1X;DP=34;DPB=34;DPRA=1.42857;EPP=20.3821;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=325;QR=1035;RO=26;RPL=8;RPP=20.3821;RPPR=59.4686;RPR=0;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=59.4686;SRR=26;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:9:9,0:9:363:0:0:0,-2.70927,-33.0337 0/0:5:5,0:5:189:0:0:0,-1.50515,-17.3679 0/1:12:6,6:6:241:6:243:-18.6356,0,-18.4539 0/1:8:6,2:6:242:2:82:-5.37144,0,-19.7487 dDocent_Contig_14861 7 . C T 95.9061 . AB=0.275862;ABP=15.6647;AC=4;AF=0.5;AN=8;AO=8;CIGAR=1X;DP=29;DPB=29;DPRA=0;EPP=20.3821;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=42;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=267;QR=807;RO=21;RPL=0;RPP=20.3821;RPPR=48.6112;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:6:5,1:5:185:1:27:-0.880326,0,-15.2009 0/1:11:9,2:9:349:2:78:-3.76348,0,-28.4594 0/1:9:6,3:6:234:3:91:-5.56937,0,-18.7218 0/1:3:1,2:1:39:2:71:-5.63501,0,-2.99347 dDocent_Contig_14862 7 . C A 487.386 . AB=0.475;ABP=3.22745;AC=3;AF=0.375;AN=8;AO=19;CIGAR=1X;DP=58;DPB=58;DPRA=0.740741;EPP=44.2683;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.974359;PAO=0;PQA=0;PQR=0;PRO=0;QA=723;QR=1480;RO=39;RPL=0;RPP=44.2683;RPPR=87.6977;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:4,15:4:156:15:571:-46.0117,0,-8.69772 0/1:3:2,1:2:78:1:39:-2.99347,0,-6.50038 0/1:18:15,3:15:556:3:113:-5.12043,0,-44.9541 0/0:18:18,0:18:690:0:0:0,-5.41854,-62.4328 dDocent_Contig_14863 13 . G A 1907.56 . AB=0.403509;ABP=16.8392;AC=4;AF=0.5;AN=8;AO=69;CIGAR=1X;DP=171;DPB=171;DPRA=0;EPP=152.842;EPPR=224.5;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2759;QR=3999;RO=102;RPL=0;RPP=152.842;RPPR=224.5;RPR=69;RUN=1;SAF=69;SAP=152.842;SAR=0;SRF=102;SRP=224.5;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:39:18,21:18:702:21:843:-64.4432,0,-51.7672 0/1:57:43,14:43:1676:14:565:-34.0333,0,-133.912 0/1:52:27,25:27:1070:25:987:-73.4764,0,-80.9373 0/1:23:14,9:14:551:9:364:-26.2007,0,-43.0088 dDocent_Contig_14864 64 . G A 215.966 . AB=0.184211;ABP=68.8402;AC=3;AF=0.5;AN=6;AO=14;CIGAR=1X;DP=76;DPB=76;DPRA=0;EPP=33.4109;EPPR=137.642;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=535;QR=2242;RO=62;RPL=14;RPP=33.4109;RPPR=137.642;RPR=0;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:43:39,4:39:1438:4:154:-1.28917,0,-116.759 ./.:.:.:.:.:.:.:. 0/1:21:15,6:15:535:6:227:-14.4711,0,-42.1526 0/1:12:8,4:8:269:4:154:-10.6211,0,-20.9158 dDocent_Contig_14866 38 . C T 170.625 . AB=0.421053;ABP=4.03889;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=31;DPB=31;DPRA=0;EPP=22.5536;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=315;QR=887;RO=22;RPL=0;RPP=22.5536;RPPR=50.7827;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 0/1:12:5,7:5:204:7:242:-18.5036,0,-15.1317 0/0:12:11,1:11:438:1:34:0,-0.213449,-36.3764 0/1:7:6,1:6:245:1:39:-1.78935,0,-20.3223 dDocent_Contig_14867 1 . N G 76.8682 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:81:-7.68573,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_14868 28 . C T 122.591 . AB=0.178571;ABP=28.1373;AC=4;AF=0.5;AN=8;AO=6;CIGAR=1X;DP=30;DPB=30;DPRA=9.66667;EPP=16.0391;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=0.958333;PAO=0;PQA=0;PQR=0;PRO=0;QA=244;QR=978;RO=24;RPL=0;RPP=16.0391;RPPR=55.1256;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:14,4:14:569:4:162:-9.54842,0,-46.1334 0/0:1:1,0:1:41:0:0:0,-0.30103,-4.09457 0/1:10:9,1:9:368:1:41:-1.08427,0,-30.4751 1/1:1:0,1:0:0:1:41:-4.09457,-0.30103,0 dDocent_Contig_14869 44 . G T 308.513 . AB=0.258065;ABP=34.5317;AC=4;AF=0.5;AN=8;AO=16;CIGAR=1X;DP=62;DPB=62;DPRA=0;EPP=37.7539;EPPR=94.401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.5652;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.978261;PAO=0;PQA=0;PQR=0;PRO=0;QA=616;QR=1821;RO=46;RPL=0;RPP=37.7539;RPPR=94.401;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:25,6:25:986:6:239:-12.5513,0,-79.6904 0/1:12:9,3:9:353:3:122:-7.76013,0,-28.5142 0/1:11:7,4:7:278:4:150:-10.5516,0,-22.077 0/1:8:5,3:5:204:3:105:-7.3862,0,-16.0152 dDocent_Contig_14870 22 . C A 43.0184 . AB=0.128205;ABP=49.8362;AC=1;AF=0.125;AN=8;AO=10;CIGAR=1X;DP=223;DPB=223;DPRA=1.25253;EPP=24.725;EPPR=465.534;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.71831;PAO=0;PQA=0;PQR=0;PRO=0;QA=396;QR=8495;RO=213;RPL=0;RPP=24.725;RPPR=465.534;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=213;SRP=465.534;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:58:58,0:58:2342:0:0:0,-17.4597,-210.924 0/0:85:80,5:80:3191:5:203:0,-6.93449,-268.601 0/0:41:41,0:41:1595:0:0:0,-12.3422,-143.781 0/1:39:34,5:34:1367:5:193:-6.00079,0,-111.546 dDocent_Contig_14871 50 . G T 305.925 . AB=0.55;ABP=3.44459;AC=2;AF=0.25;AN=8;AO=11;CIGAR=1M2D1M1X;DP=32;DPB=27.6;DPRA=1.66667;EPP=26.8965;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=436;QR=809;RO=21;RPL=0;RPP=26.8965;RPPR=48.6112;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:18:8,10:8:298:10:395:-30.49,0,-21.7533 0|1:2:1,1:1:40:1:41:-3.49251,0,-3.39362 0|0:7:7,0:7:280:0:0:0,-2.10721,-25.5721 0|0:5:5,0:5:191:0:0:0,-1.50515,-17.5563 dDocent_Contig_14872 31 . G T 3613.4 . AB=0.129771;ABP=158.975;AC=1;AF=0.125;AN=8;AO=17;CIGAR=1M1I4M1X14M;DP=222;DPB=229.95;DPRA=0;EPP=39.9253;EPPR=135.47;GTI=0;LEN=1;MEANALT=3.33333;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=627;QR=2247;RO=61;RPL=0;RPP=39.9253;RPPR=135.47;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=61;SRP=135.47;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:91:10,0,69,7:10:376:0,69,7:0,2494,270:-200.583,-203.593,-234.401,0,-30.8382,-10.0672,-181.418,-212.227,-8.64384,-210.12 0|0:76:37,7,28,3:37:1355:7,28,3:258,1014,117:-71.6242,-61.6659,-170.295,0,-89.6319,-102.299,-73.1428,-162.783,-101.109,-182.976 0|0:36:11,1,21,2:11:403:1,21,2:39,763,80:-58.9933,-59.0976,-91.7335,0,-29.7275,-26.6134,-55.7115,-85.4424,-26.34,-88.0471 1|0:19:3,9,7,0:3:113:9,7,0:330,254,0:-37.5376,-11.4665,-18.0212,-17.7022,0,-24.8573,-38.4407,-20.7304,-26.9645,-47.7023 dDocent_Contig_14873 44 . A T 197.19 . AB=0.296296;ABP=12.7417;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=41;DPB=41;DPRA=0.964286;EPP=20.3821;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=323;QR=1307;RO=33;RPL=0;RPP=20.3821;RPPR=74.6689;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:8,7:8:317:7:282:-21.2375,0,-24.3793 0/0:14:14,0:14:559:0:0:0,-4.21442,-50.6532 0/1:12:11,1:11:431:1:41:-0.482207,0,-35.5254 ./.:.:.:.:.:.:.:. dDocent_Contig_14874 45 . A G 111.831 . AB=0.16;ABP=53.2147;AC=2;AF=0.25;AN=8;AO=9;CIGAR=1X;DP=94;DPB=94;DPRA=7.5;EPP=22.5536;EPPR=187.585;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=361;QR=3347;RO=85;RPL=0;RPP=22.5536;RPPR=187.585;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=85;SRP=187.585;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:44:37,7:37:1459:7:280:-12.3264,0,-118.32 0/0:40:39,1:39:1536:1:41:0,-7.94663,-134.384 0/1:6:5,1:5:190:1:40:-2.1895,0,-15.6578 0/0:4:4,0:4:162:0:0:0,-1.20412,-14.9667 dDocent_Contig_14875 27 . T A 180.431 . AB=0.183333;ABP=55.2704;AC=3;AF=0.375;AN=8;AO=11;CIGAR=1X;DP=76;DPB=76;DPRA=1.25;EPP=26.8965;EPPR=144.156;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=448;QR=2606;RO=65;RPL=0;RPP=26.8965;RPPR=144.156;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=65;SRP=144.156;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:16:16,0:16:616:0:0:0,-4.81648,-55.7591 0/1:25:20,5:20:811:5:203:-11.1273,0,-65.7797 0/1:19:15,4:15:608:4:163:-9.33886,0,-49.3384 0/1:16:14,2:14:571:2:82:-2.9632,0,-46.9154 dDocent_Contig_14877 16 . C A 187.817 . AB=0.411765;ABP=4.1599;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=77;DPB=77;DPRA=0.85;EPP=18.2106;EPPR=138.138;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.942857;PAO=0;PQA=0;PQR=0;PRO=0;QA=277;QR=2843;RO=70;RPL=0;RPP=18.2106;RPPR=155.013;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=68;SRP=138.138;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:10,7:10:402:7:277:-20.1796,0,-31.4224 0/0:30:30,0:30:1220:0:0:0,-9.0309,-110.068 0/0:12:12,0:12:490:0:0:0,-3.61236,-44.4511 0/0:18:18,0:18:731:0:0:0,-5.41854,-66.114 dDocent_Contig_14879 152 . A G 103.723 . AB=0.333333;ABP=6.62942;AC=2;AF=0.25;AN=8;AO=5;CIGAR=1X;DP=30;DPB=30;DPRA=1;EPP=13.8677;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.92;PAO=0;PQA=0;PQR=0;PRO=0;QA=195;QR=817;RO=25;RPL=0;RPP=13.8677;RPPR=57.2971;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=57.2971;SRR=25;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:6:6,0:6:183:0:0:0,-1.80618,-16.7714 0/1:7:6,1:6:189:1:39:-1.78935,0,-15.2114 0/0:9:9,0:9:309:0:0:0,-2.70927,-28.1391 0/1:8:4,4:4:136:4:156:-12.009,0,-10.1672 dDocent_Contig_14880 22 . C T 335.77 . AB=0.145455;ABP=183.164;AC=2;AF=0.25;AN=8;AO=28;CIGAR=1X;DP=225;DPB=225;DPRA=0;EPP=63.8115;EPPR=430.79;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.8629;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=0.984772;PAO=0;PQA=0;PQR=0;PRO=0;QA=1118;QR=7936;RO=197;RPL=0;RPP=63.8115;RPPR=430.79;RPR=28;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=197;SRP=430.79;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:83:71,12:71:2836:12:478:-18.3819,0,-230.302 0/1:82:70,12:70:2822:12:477:-18.5927,0,-229.392 0/0:40:37,3:37:1502:3:123:0,-0.576411,-123.954 0/0:20:19,1:19:776:1:40:0,-2.02492,-66.1623 dDocent_Contig_14881 98 . N T 124.13 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=128;QR=0;RO=0;RPL=4;RPP=11.6962;RPPR=0;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1:0,1:0:0:1:25:-2.49986,-0.30103,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:103:-9.61002,-0.90309,0 dDocent_Contig_14882 97 . C G 33.2158 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=3X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=19;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=57;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. 1|1:2:0,2:0:0:2:57:-3.32029,-0.60206,0 .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. dDocent_Contig_14883 16 . G A 604.291 . AB=0.296703;ABP=35.6778;AC=4;AF=0.5;AN=8;AO=27;CIGAR=1X;DP=91;DPB=91;DPRA=0;EPP=61.6401;EPPR=141.985;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1042;QR=2570;RO=64;RPL=0;RPP=61.6401;RPPR=141.985;RPR=27;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=64;SRP=141.985;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:22,7:22:893:7:241:-13.2859,0,-71.9453 0/1:35:25,10:25:996:10:404:-26.1844,0,-79.401 0/1:14:9,5:9:359:5:195:-13.708,0,-28.4569 0/1:13:8,5:8:322:5:202:-14.6487,0,-25.435 dDocent_Contig_14884 59 . G A 70.5978 . AB=0;ABP=0;AC=2;AF=0.25;AN=8;AO=2;CIGAR=1X;DP=42;DPB=42;DPRA=0.15;EPP=7.35324;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.875;PAO=0;PQA=0;PQR=0;PRO=0;QA=68;QR=1460;RO=40;RPL=2;RPP=7.35324;RPPR=89.8692;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:68:-6.45742,-0.60206,0 0/0:12:12,0:12:441:0:0:0,-3.61236,-40.0348 0/0:23:23,0:23:845:0:0:0,-6.92369,-76.3742 0/0:5:5,0:5:174:0:0:0,-1.50515,-16.0015 dDocent_Contig_14885 74 . G A 337.456 . AB=0.565217;ABP=3.86001;AC=1;AF=0.25;AN=4;AO=13;CIGAR=1X;DP=32;DPB=32;DPRA=2.55556;EPP=31.2394;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=467;QR=687;RO=19;RPL=13;RPP=31.2394;RPPR=44.2683;RPR=0;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:10,13:10:355:13:467:-35.4446,0,-25.3648 0/0:9:9,0:9:332:0:0:0,-2.70927,-30.2315 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_14886 42 . C G 31.8362 . AB=0.222222;ABP=9.04217;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X;DP=64;DPB=64;DPRA=0.490909;EPP=3.0103;EPPR=129.096;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.967742;PAO=0;PQA=0;PQR=0;PRO=0;QA=80;QR=2488;RO=62;RPL=2;RPP=7.35324;RPPR=120.83;RPR=0;RUN=1;SAF=1;SAP=3.0103;SAR=1;SRF=61;SRP=129.096;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:12:12,0:12:486:0:0:0,-3.61236,-44.0916 0/1:9:7,2:7:278:2:80:-4.8823,0,-22.6811 0/0:22:22,0:22:872:0:0:0,-6.62266,-78.7911 0/0:21:21,0:21:852:0:0:0,-6.32163,-76.9911 dDocent_Contig_14888 98 . N T 38.0082 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=40;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:40:-3.79967,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_14889 113 . G A 49.507 . AB=0.25;ABP=11.6962;AC=2;AF=0.25;AN=8;AO=4;CIGAR=1X;DP=35;DPB=35;DPRA=0.842105;EPP=11.6962;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=129;QR=1023;RO=31;RPL=0;RPP=11.6962;RPPR=70.3259;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=70.3259;SRR=31;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:11,0:11:375:0:0:0,-3.31133,-34.0787 0/0:8:8,0:8:252:0:0:0,-2.40824,-22.9862 0/1:8:7,1:7:221:1:32:-0.791073,0,-17.7907 0/1:8:5,3:5:175:3:97:-6.643,0,-13.6855 dDocent_Contig_14890 28 . A G 40.4633 . AB=0.157895;ABP=22.325;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=52;DPB=52;DPRA=1.72727;EPP=9.52472;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=0.979592;PAO=0;PQA=0;PQR=0;PRO=0;QA=123;QR=1959;RO=49;RPL=0;RPP=9.52472;RPPR=109.412;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:21:21,0:21:837:0:0:0,-6.32163,-75.6458 0/1:19:16,3:16:645:3:123:-5.74522,0,-52.6642 0/0:7:7,0:7:273:0:0:0,-2.10721,-24.9332 0/0:5:5,0:5:204:0:0:0,-1.50515,-18.744 dDocent_Contig_14891 52 . C G 30.7079 . AB=0.2;ABP=10.8276;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X;DP=72;DPB=72;DPRA=0.483871;EPP=7.35324;EPPR=155.013;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=2803;RO=70;RPL=2;RPP=7.35324;RPPR=155.013;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=70;SRP=155.013;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:33:33,0:33:1320:0:0:0,-9.93399,-119.059 0/0:22:22,0:22:884:0:0:0,-6.62266,-79.8671 0/1:10:8,2:8:321:2:82:-4.76938,0,-26.2467 0/0:7:7,0:7:278:0:0:0,-2.10721,-25.3876 dDocent_Contig_14892 13 . C T 112.517 . AB=0.307692;ABP=11.3621;AC=2;AF=0.25;AN=8;AO=11;CIGAR=1X;DP=159;DPB=159;DPRA=0;EPP=26.8965;EPPR=324.388;GTI=0;LEN=1;MEANALT=1;MQM=33.3636;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=370;QR=5874;RO=148;RPL=0;RPP=26.8965;RPPR=324.388;RPR=11;RUN=1;SAF=0;SAP=26.8965;SAR=11;SRF=148;SRP=324.388;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:69:67,2:67:2667:2:70:0,-14.7933,-234.178 0/0:64:63,1:63:2503:1:33:0,-16.2197,-222.367 0/1:14:12,2:12:460:2:65:-1.4863,0,-37.5219 0/1:12:6,6:6:244:6:202:-12.9186,0,-18.7265 dDocent_Contig_14894 107 . N A 97.0363 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=104;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:104:-9.70309,-0.90309,0 ./.:.:.:.:.:.:.:. dDocent_Contig_14895 30 . C G 202.144 . AB=0.32;ABP=10.0459;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=78;DPB=78;DPRA=1.41509;EPP=20.3821;EPPR=155.013;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=323;QR=2784;RO=70;RPL=0;RPP=20.3821;RPPR=155.013;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=70;SRP=155.013;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:47:47,0:47:1845:0:0:0,-14.1484,-166.249 0/1:25:17,8:17:694:8:323:-21.9128,0,-55.2618 0/0:5:5,0:5:204:0:0:0,-1.50515,-18.744 0/0:1:1,0:1:41:0:0:0,-0.30103,-4.09457 dDocent_Contig_14896 11 . T A 327.558 . AB=0.246154;ABP=39.3908;AC=4;AF=0.5;AN=8;AO=16;CIGAR=1X;DP=65;DPB=65;DPRA=0;EPP=37.7539;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=646;QR=1951;RO=49;RPL=0;RPP=37.7539;RPPR=109.412;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:33:29,4:29:1163:4:161:-4.94128,0,-95.0058 0/1:23:14,9:14:544:9:362:-26.0203,0,-42.3728 0/1:5:4,1:4:163:1:41:-2.58942,0,-13.5533 0/1:4:2,2:2:81:2:82:-6.57556,0,-6.48161 dDocent_Contig_14897 107 . N G 64.5902 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=68;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:68:-6.45793,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_14898 107 . N T 160.67 . AB=0;ABP=0;AC=4;AF=0.666667;AN=6;AO=5;CIGAR=1X;DP=6;DPB=6;DPRA=2.5;EPP=13.8677;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=55.6;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=166;QR=0;RO=0;RPL=0;RPP=13.8677;RPPR=0;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:99:-9.23746,-0.90309,0 1/1:2:0,2:0:0:2:67:-6.22596,-0.60206,0 ./.:.:.:.:.:.:.:. 0/0:1:0,0:0:0:0:0:0,0,0 dDocent_Contig_14899 7 . A G 208.881 . AB=0.375;ABP=7.35324;AC=4;AF=0.5;AN=8;AO=12;CIGAR=1X;DP=32;DPB=32;DPRA=0;EPP=29.068;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=406;QR=757;RO=20;RPL=0;RPP=29.068;RPPR=46.4397;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:9,3:9:337:3:78:-3.6664,0,-27.0696 0/1:5:2,3:2:74:3:115:-9.21974,0,-5.52028 0/1:10:8,2:8:308:2:66:-3.25623,0,-25.0721 0/1:5:1,4:1:38:4:147:-12.0841,0,-2.29212 dDocent_Contig_14900 10 . T A 149.568 . AB=0.212766;ABP=36.6912;AC=2;AF=0.25;AN=8;AO=10;CIGAR=1X3M1X;DP=61;DPB=61;DPRA=3.35714;EPP=24.725;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=50.1;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=395;QR=2041;RO=51;RPL=0;RPP=24.725;RPPR=113.755;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:12:12,0:12:481:0:0:0,-3.61236,-43.6419 0|1:21:18,3:18:717:3:111:-4.03129,0,-58.5365 0|1:26:19,7:19:762:7:284:-14.3222,0,-61.0759 0|0:2:2,0:2:81:0:0:0,-0.60206,-7.68573 dDocent_Contig_14902 44 . G A 458.74 . AB=0.322034;ABP=19.2411;AC=3;AF=0.375;AN=8;AO=19;CIGAR=1X2M1X;DP=70;DPB=70;DPRA=1.78788;EPP=44.2683;EPPR=111.584;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=755;QR=1973;RO=50;RPL=0;RPP=44.2683;RPPR=111.584;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:32:16,15:16:624:15:596:-44.2499,0,-46.7626 0|1:6:5,1:5:200:1:41:-2.28839,0,-16.5734 0|1:21:18,3:18:703:3:118:-4.68088,0,-57.2746 0|0:11:11,0:11:446:0:0:0,-3.31133,-40.4962 dDocent_Contig_14903 10 . T C 504.614 . AB=0.466667;ABP=3.15506;AC=4;AF=0.5;AN=8;AO=7;CIGAR=2X3M;DP=50;DPB=50;DPRA=0;EPP=18.2106;EPPR=52.9542;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=278;QR=922;RO=23;RPL=0;RPP=18.2106;RPPR=52.9542;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:21:11,3,7,0:11:441:3,7,0:120,284,0:-20.1142,-13.5422,-48.9705,0,-26.4502,-34.2278,-23.4255,-49.8736,-36.335,-59.7582 0|1:15:7,0,1,7:7:281:0,1,7:0,24,278:-20.9423,-23.0495,-46.2164,-21.484,-44.6401,-44.3391,0,-23.3211,-21.7562,-21.2139 0|1:8:2,1,4,0:2:79:1,4,0:40,112,0:-7.42122,-4.70359,-10.9443,0,-3.23084,-5.33676,-8.02328,-11.2453,-6.54088,-14.5538 0|1:6:3,0,3,0:3:121:0,3,0:0,120,0:-9.38151,-10.2846,-20.2605,0,-10.3771,-9.47402,-10.2846,-20.2605,-10.3771,-20.2605 dDocent_Contig_14904 14 . T C 2125.92 . AB=0.491525;ABP=3.08391;AC=7;AF=0.875;AN=8;AO=58;CIGAR=1X20M;DP=118;DPB=108.476;DPRA=0;EPP=128.956;EPPR=76.8404;GTI=0;LEN=1;MEANALT=2.25;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2307;QR=1310;RO=34;RPL=0;RPP=128.956;RPPR=76.8404;RPR=58;RUN=1;SAF=58;SAP=128.956;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:33:1,8,24:1:29:8,24:321,960:-103.028,-76.8794,-76.7754,-24.2516,0,-19.3232 1|1:35:6,10,18:6:237:10,18:403,715:-70.8076,-39.3886,-55.8844,-13.7374,0,-27.8287 0|1:39:24,3,12:24:925:3,12:122,476:-31.9465,-29.106,-104.149,0,-65.8691,-72.3224 1|1:11:3,4,4:3:119:4,4:148,156:-14.2075,-3.01852,-11.6133,-2.27937,0,-10.8827 dDocent_Contig_14905 46 . A C 354.447 . AB=0.395349;ABP=7.10075;AC=3;AF=0.375;AN=8;AO=18;CIGAR=1X;DP=53;DPB=53;DPRA=0;EPP=42.0968;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=46;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.611111;PAIREDR=0.6;PAO=0;PQA=0;PQR=0;PRO=0;QA=724;QR=1351;RO=35;RPL=0;RPP=42.0968;RPPR=79.0118;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:10:9,1:9:344:1:41:0,-0.618846,-28.9237 0/1:21:14,7:14:544:7:286:-19.7932,0,-42.9813 0/1:15:7,8:7:271:8:322:-16.0367,0,-20.2398 0/1:7:5,2:5:192:2:75:-5.01238,0,-15.5419 dDocent_Contig_14906 160 . C T 221.976 . AB=0.391304;ABP=5.3706;AC=2;AF=0.25;AN=8;AO=9;CIGAR=1X;DP=38;DPB=38;DPRA=1.53333;EPP=22.5536;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=353;QR=1159;RO=29;RPL=9;RPP=22.5536;RPPR=65.983;RPR=0;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=65.983;SRR=29;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:13,7:13:512:7:280:-19.5512,0,-40.4035 0/0:13:13,0:13:529:0:0:0,-3.91339,-47.9569 0/1:3:1,2:1:37:2:73:-6.02698,0,-2.79474 0/0:2:2,0:2:81:0:0:0,-0.60206,-7.68573 dDocent_Contig_14907 41 . A T 81.7712 . AB=0.25;ABP=11.6962;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=27;DPB=27;DPRA=4.36364;EPP=11.6962;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=159;QR=882;RO=23;RPL=0;RPP=11.6962;RPPR=52.9542;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:2:2,0:2:80:0:0:0,-0.60206,-7.59157 0/0:1:1,0:1:41:0:0:0,-0.30103,-4.09457 0/1:16:12,4:12:459:4:159:-9.87527,0,-36.8355 0/0:8:8,0:8:302:0:0:0,-2.40824,-27.5287 dDocent_Contig_14908 10 . T A 70.4616 . AB=0.0991736;ABP=171.865;AC=2;AF=0.25;AN=8;AO=12;CIGAR=1X3M1X;DP=141;DPB=141;DPRA=2.01667;EPP=29.068;EPPR=274.444;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=59.472;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=471;QR=4963;RO=125;RPL=0;RPP=29.068;RPPR=274.444;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=125;SRP=274.444;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:24:21,1,2:21:843:1,2:41,79:-0.169433,-3.10203,-72.2683,0,-66.0689,-68.8513 0|1:43:36,5,2:36:1432:5,2:192,82:-4.9038,0,-116.386,-8.96535,-111.122,-126.278 0|1:54:48,6,0:48:1891:6,0:238,0:-5.53853,0,-153.098,-19.988,-154.904,-174.497 0|0:20:20,0,0:20:797:0,0:0,0:0,-6.0206,-72.05,-6.0206,-72.05,-72.05 dDocent_Contig_14909 159 . G A 117.354 . 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AB=0.60396;ABP=12.4917;AC=6;AF=0.75;AN=8;AO=61;CIGAR=1X1M;DP=101;DPB=101;DPRA=0;EPP=135.47;EPPR=63.8115;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2213;QR=1020;RO=28;RPL=61;RPP=135.47;RPPR=63.8115;RPR=0;RUN=1;SAF=61;SAP=135.47;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:35:1,4,30:1:32:4,30:147,1108:-99.8188,-88.1016,-89.4743,-9.48748,0,-3.02546 0|1:35:15,2,18:15:548:2,18:70,656:-49.0866,-47.9083,-92.0841,0,-39.0975,-39.3723 1|1:17:3,4,10:3:107:4,10:145,341:-29.8708,-18.9286,-26.4503,-3.12278,0,-8.83221 0|1:14:9,2,3:9:333:2,3:74,108:-6.09693,-2.74818,-29.3967,0,-21.1891,-26.3401 dDocent_Contig_14911 43 . T A 38.0077 . AB=0.214286;ABP=12.937;AC=2;AF=0.333333;AN=6;AO=3;CIGAR=1X2M2D8M;DP=19;DPB=18.5385;DPRA=1.4;EPP=9.52472;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=119;QR=634;RO=16;RPL=0;RPP=9.52472;RPPR=37.7539;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:5:5,0:5:200:0:0:0,-1.50515,-18.3799 0|1:5:4,1:4:160:1:40:-2.49053,0,-13.2787 0|1:9:7,2:7:274:2:79:-4.78836,0,-22.3187 .:.:.:.:.:.:.:. dDocent_Contig_14912 110 . G A 92.852 . 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AB=0.384615;ABP=4.51363;AC=2;AF=0.25;AN=8;AO=5;CIGAR=1X;DP=35;DPB=35;DPRA=0.590909;EPP=13.8677;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.4;PAIREDR=0.633333;PAO=0;PQA=0;PQR=0;PRO=0;QA=205;QR=1216;RO=30;RPL=0;RPP=13.8677;RPPR=68.1545;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:16:16,0:16:650:0:0:0,-4.81648,-58.8318 0/1:7:5,2:5:200:2:82:-5.67247,0,-16.2723 0/1:6:3,3:3:122:3:123:-9.65861,0,-9.56631 0/0:6:6,0:6:244:0:0:0,-1.80618,-22.3388 dDocent_Contig_14917 20 . G A 187.617 . AB=0.264706;ABP=19.3602;AC=3;AF=0.375;AN=8;AO=9;CIGAR=1X;DP=36;DPB=36;DPRA=5.66667;EPP=22.5536;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=369;QR=1083;RO=27;RPL=0;RPP=22.5536;RPPR=61.6401;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:2:2,0:2:82:0:0:0,-0.60206,-7.77968 0/1:12:9,3:9:366:3:123:-7.85243,0,-29.6926 0/1:10:7,3:7:282:3:123:-8.45449,0,-22.7423 0/1:12:9,3:9:353:3:123:-7.85243,0,-28.517 dDocent_Contig_14918 98 . N T 1423.89 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=44;CIGAR=1X;DP=44;DPB=44;DPRA=0;EPP=98.5551;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=59.0909;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=0.886364;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1561;QR=0;RO=0;RPL=44;RPP=98.5551;RPPR=0;RPR=0;RUN=1;SAF=44;SAP=98.5551;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:20:0,20:0:0:20:720:-65.0873,-6.0206,0 1/1:10:0,10:0:0:10:344:-31.289,-3.0103,0 1/1:12:0,12:0:0:12:428:-38.8581,-3.61236,0 1/1:2:0,2:0:0:2:69:-6.55266,-0.60206,0 dDocent_Contig_14919 74 . T G 603.513 . AB=0.380952;ABP=10.7656;AC=4;AF=0.5;AN=8;AO=24;CIGAR=1X;DP=63;DPB=63;DPRA=0;EPP=55.1256;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=0.916667;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=945;QR=1343;RO=38;RPL=24;RPP=55.1256;RPPR=85.5263;RPR=0;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:17,5:17:592:5:198:-11.5731,0,-46.9707 0/1:13:6,6:6:210:6:241:-18.3284,0,-15.5051 0/1:16:5,11:5:184:11:428:-34.055,0,-12.1003 0/1:12:10,2:10:357:2:78:-3.79094,0,-28.8529 dDocent_Contig_14920 9 . T C 308.499 . AB=0.2;ABP=10.8276;AC=0;AF=0;AN=8;AO=2;CIGAR=1M1X1M1X2M2I4M1X4M1D1M1X;DP=76;DPB=77.5;DPRA=0;EPP=7.35324;EPPR=63.8115;GTI=0;LEN=1;MEANALT=4;MQM=22;MQMR=60;NS=4;NUMALT=9;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=44;QR=1081;RO=28;RPL=0;RPP=7.35324;RPPR=63.8115;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:19:2,2,6,0,2,4,1,0,0,0:2:78:2,6,0,2,4,1,0,0,0:77,197,0,48,145,16,0,0,0:-20.7562,-15.0264,-20.8462,-5.43334,-5.52361,-10.0519,-21.3583,-21.4483,-11.8581,-27.7781,-17.6503,-17.7404,-8.15457,-24.0699,-23.4679,-9.50475,-9.59488,0,-15.9287,-12.2218,-14.7246,-20.2289,-20.3189,-10.7323,-26.6481,-22.9417,-14.8005,-26.3471,-21.3583,-21.4483,-11.8581,-27.7781,-24.0699,-15.9287,-26.6481,-27.7781,-21.3583,-21.4483,-11.8581,-27.7781,-24.0699,-15.9287,-26.6481,-27.7781,-27.7781,-21.3583,-21.4483,-11.8581,-27.7781,-24.0699,-15.9287,-26.6481,-27.7781,-27.7781,-27.7781 0|0:31:12,0,6,3,1,0,2,3,0,3:12:469:0,6,3,1,0,2,3,0,3:0,191,95,39,0,27,114,0,87:-11.7685,-15.3809,-53.9708,0,-38.5993,-36.7931,-7.73473,-46.3286,-30.9585,-45.4255,-12.1706,-50.7633,-35.3916,-43.121,-50.4623,-15.3809,-53.9708,-38.5993,-46.3286,-50.7633,-53.9708,-13.5736,-52.1571,-36.7898,-44.5167,-48.95,-52.1571,-51.5551,-6.01839,-44.6173,-29.2454,-36.9748,-41.4095,-44.6173,-42.8049,-43.7142,-15.3809,-53.9708,-38.5993,-46.3286,-50.7633,-53.9708,-52.1571,-44.6173,-53.9708,-8.4633,-47.055,-31.6857,-39.4137,-43.8475,-47.055,-45.2433,-37.7016,-47.055,-46.1519 0|0:16:9,0,2,0,0,0,1,0,0,0:9:345:0,2,0,0,0,1,0,0,0:0,77,0,0,0,10,0,0,0:-3.6584,-6.36767,-34.746,0,-28.4164,-27.8143,-6.36767,-34.746,-28.4164,-34.746,-6.36767,-34.746,-28.4164,-34.746,-34.746,-6.36767,-34.746,-28.4164,-34.746,-34.746,-34.746,-5.79728,-34.1626,-27.8349,-34.1626,-34.1626,-34.1626,-33.8616,-6.36767,-34.746,-28.4164,-34.746,-34.746,-34.746,-34.1626,-34.746,-6.36767,-34.746,-28.4164,-34.746,-34.746,-34.746,-34.1626,-34.746,-34.746,-6.36767,-34.746,-28.4164,-34.746,-34.746,-34.746,-34.1626,-34.746,-34.746,-34.746 0|0:10:5,0,1,0,0,0,0,0,2,0:5:189:0,1,0,0,0,0,0,2,0:0,38,0,0,0,0,0,44,0:-1.63951,-3.14466,-18.6922,0,-15.5693,-15.2683,-3.14466,-18.6922,-15.5693,-18.6922,-3.14466,-18.6922,-15.5693,-18.6922,-18.6922,-3.14466,-18.6922,-15.5693,-18.6922,-18.6922,-18.6922,-3.14466,-18.6922,-15.5693,-18.6922,-18.6922,-18.6922,-18.6922,-3.14466,-18.6922,-15.5693,-18.6922,-18.6922,-18.6922,-18.6922,-18.6922,-0.377506,-15.9067,-12.7867,-15.9067,-15.9067,-15.9067,-15.9067,-15.9067,-15.3047,-3.14466,-18.6922,-15.5693,-18.6922,-18.6922,-18.6922,-18.6922,-18.6922,-15.9067,-18.6922 dDocent_Contig_14921 112 . C T 761.758 . 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A C 68.0543 . AB=0.285714;ABP=8.59409;AC=2;AF=0.25;AN=8;AO=4;CIGAR=1X;DP=23;DPB=23;DPRA=1.55556;EPP=5.18177;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=55.5;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=152;QR=657;RO=19;RPL=0;RPP=11.6962;RPPR=44.2683;RPR=4;RUN=1;SAF=3;SAP=5.18177;SAR=1;SRF=0;SRP=44.2683;SRR=19;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:7:7,0:7:241:0:0:0,-2.10721,-22.0263 0/1:11:8,3:8:278:3:117:-7.58465,0,-22.0467 0/1:3:2,1:2:69:1:35:-2.59148,0,-5.64957 0/0:2:2,0:2:69:0:0:0,-0.60206,-6.55266 dDocent_Contig_14926 8 . T C 1036.37 . AB=0.578125;ABP=6.40323;AC=3;AF=0.375;AN=8;AO=37;CIGAR=1X;DP=69;DPB=69;DPRA=4.26667;EPP=83.3548;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1414;QR=1244;RO=32;RPL=0;RPP=83.3548;RPPR=72.4974;RPR=37;RUN=1;SAF=37;SAP=83.3548;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:32:12,20:12:468:20:761:-59.1819,0,-32.8396 0/0:5:5,0:5:195:0:0:0,-1.50515,-17.9242 0/1:15:4,11:4:154:11:427:-34.2695,0,-9.71801 0/1:17:11,6:11:427:6:226:-15.5834,0,-33.6675 dDocent_Contig_14927 33 . C T 58.9237 . AB=0.190476;ABP=20.4855;AC=2;AF=0.25;AN=8;AO=4;CIGAR=1X;DP=41;DPB=41;DPRA=1.05;EPP=11.6962;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.972973;PAO=0;PQA=0;PQR=0;PRO=0;QA=164;QR=1484;RO=37;RPL=0;RPP=11.6962;RPPR=83.3548;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:6:5,1:5:202:1:41:-2.28839,0,-16.7557 0/0:13:13,0:13:520:0:0:0,-3.91339,-47.1428 0/1:15:12,3:12:487:3:123:-6.94934,0,-39.666 0/0:7:7,0:7:275:0:0:0,-2.10721,-25.1166 dDocent_Contig_14928 121 . G T 321.365 . AB=0.1875;ABP=16.582;AC=3;AF=0.375;AN=8;AO=12;CIGAR=1X;DP=43;DPB=43;DPRA=4.44444;EPP=29.068;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=457;QR=1157;RO=31;RPL=0;RPP=29.068;RPPR=70.3259;RPR=12;RUN=1;SAF=0;SAP=29.068;SAR=12;SRF=0;SRP=70.3259;SRR=31;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:8:0,8:0:0:8:304:-27.7186,-2.40824,0 0/0:16:15,1:15:542:1:39:0,-0.919915,-45.207 0/1:16:13,3:13:498:3:114:-5.8155,0,-40.3497 0/0:3:3,0:3:117:0:0:0,-0.90309,-10.9104 dDocent_Contig_14929 32 . A C 485.28 . AB=0.322581;ABP=19.9618;AC=4;AF=0.5;AN=8;AO=20;CIGAR=1X;DP=62;DPB=62;DPRA=0;EPP=46.4397;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.6;PAIREDR=0.658537;PAO=0;PQA=0;PQR=0;PRO=0;QA=813;QR=1612;RO=41;RPL=0;RPP=46.4397;RPPR=92.0407;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:6:3,2:3:123:2:79:-5.58759,0,-9.55018 0/1:15:12,3:12:476:3:121:-6.76475,0,-38.6754 0/1:24:13,11:13:510:11:449:-33.5412,0,-39.0206 0/1:17:13,4:13:503:4:164:-10.0324,0,-40.4917 dDocent_Contig_14931 9 . T C 1228.03 . AB=0.52439;ABP=3.434;AC=4;AF=0.5;AN=8;AO=43;CIGAR=1X3M15I2M;DP=82;DPB=189.5;DPRA=0;EPP=96.3836;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1.25;MQM=59.1628;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.953488;PAIREDR=0.837838;PAO=0;PQA=0;PQR=0;PRO=0;QA=1707;QR=1450;RO=37;RPL=0;RPP=96.3836;RPPR=83.3548;RPR=43;RUN=1;SAF=43;SAP=96.3836;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:18:7,11:7:276:11:436:-34.1774,0,-19.7912 0|1:34:15,19:15:589:19:753:-57.8623,0,-43.1162 0|1:20:9,9:9:349:9:359:-26.8645,0,-25.9612 0|1:10:6,4:6:236:4:159:-11.297,0,-18.6021 dDocent_Contig_14932 177 . A G 80.8105 . AB=0;ABP=0;AC=2;AF=0.25;AN=8;AO=2;CIGAR=1X;DP=32;DPB=32;DPRA=0.2;EPP=7.35324;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=1206;RO=30;RPL=2;RPP=7.35324;RPPR=68.1545;RPR=0;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=68.1545;SRR=30;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:10:10,0:10:401:0:0:0,-3.0103,-36.4481 0/0:16:16,0:16:644:0:0:0,-4.81648,-58.2936 0/0:4:4,0:4:161:0:0:0,-1.20412,-14.8753 1/1:2:0,2:0:0:2:82:-7.77968,-0.60206,0 dDocent_Contig_14933 61 . C G 463.661 . AB=0.365385;ABP=11.1951;AC=4;AF=0.5;AN=8;AO=19;CIGAR=1X2M;DP=52;DPB=52;DPRA=0;EPP=44.2683;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=747;QR=1145;RO=30;RPL=19;RPP=44.2683;RPPR=68.1545;RPR=0;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:20:10,2,8:10:398:2,8:76,311:-22.6638,-22.0173,-54.1924,0,-29.2445,-30.4965 0|1:7:6,0,1:6:216:0,1:0,39:-1.78935,-3.59553,-21.1811,0,-17.971,-17.6699 0|1:21:13,0,8:13:496:0,8:0,323:-23.1173,-27.0307,-67.7046,0,-41.0687,-38.6605 0|1:4:1,0,2:1:35:0,2:0,74:-5.87875,-6.17978,-9.03839,0,-2.93284,-2.33078 dDocent_Contig_14934 30 . T A 135.252 . AB=0.3;ABP=9.95901;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=81;DPB=81;DPRA=0.983607;EPP=16.0391;EPPR=165.871;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=232;QR=3019;RO=75;RPL=0;RPP=16.0391;RPPR=165.871;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=75;SRP=165.871;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:13:13,0:13:522:0:0:0,-3.91339,-47.3263 0/0:4:4,0:4:155:0:0:0,-1.20412,-14.3218 0/0:44:44,0:44:1778:0:0:0,-13.2453,-160.23 0/1:20:14,6:14:564:6:232:-15.2241,0,-45.08 dDocent_Contig_14935 17 . C A 444.076 . AB=0.391304;ABP=7.73089;AC=3;AF=0.375;AN=8;AO=18;CIGAR=1X;DP=53;DPB=53;DPRA=2.19048;EPP=42.0968;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.222222;PAIREDR=0.942857;PAO=0;PQA=0;PQR=0;PRO=0;QA=695;QR=1406;RO=35;RPL=0;RPP=42.0968;RPPR=79.0118;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:8,10:8:316:10:398:-30.7604,0,-23.3865 0/1:5:1,4:1:41:4:158:-13.0948,0,-2.58942 0/1:23:19,4:19:763:4:139:-5.92316,0,-62.0676 0/0:7:7,0:7:286:0:0:0,-2.10721,-26.1148 dDocent_Contig_14938 7 . A C 137.526 . AB=0.37037;ABP=10.8919;AC=2;AF=0.25;AN=8;AO=20;CIGAR=1X;DP=78;DPB=78;DPRA=2.25;EPP=46.4397;EPPR=128.956;GTI=0;LEN=1;MEANALT=1;MQM=18.4;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=776;QR=2213;RO=58;RPL=0;RPP=46.4397;RPPR=128.956;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:18,13:18:684:13:503:-13.0319,0,-52.5601 0/1:23:16,7:16:612:7:273:-4.11777,0,-48.4957 0/0:15:15,0:15:573:0:0:0,-4.51545,-51.9116 0/0:9:9,0:9:344:0:0:0,-2.70927,-31.317 dDocent_Contig_14939 82 . G A 55.8279 . AB=0.2;ABP=18.6449;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=36;DPB=36;DPRA=3.75;EPP=11.6962;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=44;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=0;PAIREDR=0.875;PAO=0;PQA=0;PQR=0;PRO=0;QA=148;QR=1037;RO=32;RPL=4;RPP=11.6962;RPPR=72.4974;RPR=0;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:4:4,0:4:131:0:0:0,-1.20412,-12.1141 0/0:7:7,0:7:236:0:0:0,-2.10721,-21.5702 0/1:20:16,4:16:519:4:148:-7.28165,0,-40.9998 0/0:5:5,0:5:151:0:0:0,-1.50515,-13.8887 dDocent_Contig_14940 16 . A C 2998.11 . AB=0.656934;ABP=32.3173;AC=6;AF=0.75;AN=8;AO=90;CIGAR=1X3M;DP=137;DPB=137;DPRA=0;EPP=198.443;EPPR=52.9542;GTI=0;LEN=1;MEANALT=2.25;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.888889;PAIREDR=0.913043;PAO=0;PQA=0;PQR=0;PRO=0;QA=3506;QR=897;RO=23;RPL=0;RPP=198.443;RPPR=52.9542;RPR=90;RUN=1;SAF=90;SAP=198.443;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:19:0,7,12:0:0:7,12:268,468:-60.8519,-38.8602,-36.753,-22.3769,0,-18.7645 1|1:34:6,7,20:6:232:7,20:275,782:-66.0592,-45.2458,-62.1902,-3.5717,0,-16.6007 0|1:45:8,6,31:8:322:6,31:226,1205:-96.6263,-80.5172,-105.251,0,-8.04393,-17.2203 0|1:39:9,3,27:9:343:3,27:116,1051:-83.6716,-76.8529,-104.08,0,-18.5986,-20.0004 dDocent_Contig_14941 75 . C T 122.831 . AB=0.130435;ABP=30.2953;AC=4;AF=0.5;AN=8;AO=6;CIGAR=1X;DP=28;DPB=28;DPRA=4.33333;EPP=16.0391;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=221;QR=810;RO=22;RPL=6;RPP=16.0391;RPPR=50.7827;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:10,2:10:367:2:73:-3.31894,0,-29.766 1/1:3:0,3:0:0:3:111:-10.3539,-0.90309,0 0/1:11:10,1:10:369:1:37:-0.386499,0,-30.2483 0/0:2:2,0:2:74:0:0:0,-0.60206,-7.02588 dDocent_Contig_14944 38 . G T 89.4477 . AB=0.185185;ABP=26.2531;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=88;DPB=88;DPRA=1.32787;EPP=13.8677;EPPR=183.243;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.891566;PAO=0;PQA=0;PQR=0;PRO=0;QA=201;QR=3308;RO=83;RPL=0;RPP=13.8677;RPPR=183.243;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=83;SRP=183.243;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:22,5:22:877:5:201:-10.3427,0,-71.1114 0/0:28:28,0:28:1102:0:0:0,-8.42884,-99.4673 0/0:25:25,0:25:1007:0:0:0,-7.52575,-90.9206 0/0:8:8,0:8:322:0:0:0,-2.40824,-29.3483 dDocent_Contig_14945 20 . G A 80.8098 . AB=0;ABP=0;AC=2;AF=0.25;AN=8;AO=2;CIGAR=1X;DP=50;DPB=50;DPRA=0.125;EPP=7.35324;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=1906;RO=48;RPL=0;RPP=7.35324;RPPR=107.241;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:16:16,0:16:644:0:0:0,-4.81648,-58.2942 0/0:18:18,0:18:712:0:0:0,-5.41854,-64.4046 0/0:14:14,0:14:550:0:0:0,-4.21442,-49.8384 1/1:2:0,2:0:0:2:82:-7.77968,-0.60206,0 dDocent_Contig_14946 16 . T C 2308.39 . AB=0.769231;ABP=52.119;AC=6;AF=0.75;AN=8;AO=71;CIGAR=1X;DP=89;DPB=89;DPRA=0;EPP=157.185;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.380282;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2849;QR=707;RO=18;RPL=0;RPP=157.185;RPPR=42.0968;RPR=71;RUN=1;SAF=71;SAP=157.185;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:35:7,28:7:268:28:1140:-92.3406,0,-13.9456 1/1:10:0,10:0:0:10:405:-36.8106,-3.0103,0 0/1:43:11,32:11:439:32:1263:-100.991,0,-26.9203 1/1:1:0,1:0:0:1:41:-4.09457,-0.30103,0 dDocent_Contig_14947 107 . N T 459.275 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=17;CIGAR=1X;DP=17;DPB=17;DPRA=0;EPP=39.9253;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=491;QR=0;RO=0;RPL=0;RPP=39.9253;RPPR=0;RPR=17;RUN=1;SAF=0;SAP=39.9253;SAR=17;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:7:0,7:0:0:7:202:-18.4639,-2.10721,0 1/1:5:0,5:0:0:5:151:-13.8898,-1.50515,0 1/1:3:0,3:0:0:3:82:-7.65196,-0.90309,0 1/1:2:0,2:0:0:2:56:-5.31935,-0.60206,0 dDocent_Contig_14948 32 . T A 62.776 . AB=0.172414;ABP=30.0414;AC=2;AF=0.25;AN=8;AO=5;CIGAR=1X;DP=44;DPB=44;DPRA=1.93333;EPP=13.8677;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=196;QR=1488;RO=39;RPL=0;RPP=13.8677;RPPR=87.6977;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:9,2:9:340:2:77:-3.9975,0,-27.643 0/1:18:15,3:15:590:3:119:-5.67685,0,-48.022 0/0:11:11,0:11:410:0:0:0,-3.31133,-37.2395 0/0:4:4,0:4:148:0:0:0,-1.20412,-13.6802 dDocent_Contig_14950 45 . A G 346.946 . AB=0.413793;ABP=4.88226;AC=4;AF=0.666667;AN=6;AO=13;CIGAR=1X;DP=30;DPB=30;DPRA=0;EPP=31.2394;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=0.882353;PAO=0;PQA=0;PQR=0;PRO=0;QA=509;QR=678;RO=17;RPL=13;RPP=31.2394;RPPR=39.9253;RPR=0;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:7,5:7:279:5:196:-14.4016,0,-21.8673 0/1:17:10,7:10:399:7:273:-19.8195,0,-31.1509 ./.:.:.:.:.:.:.:. 1/1:1:0,1:0:0:1:40:-3.99568,-0.30103,0 dDocent_Contig_14951 79 . C T 182.648 . AB=0.235294;ABP=34.0496;AC=3;AF=0.375;AN=8;AO=12;CIGAR=1X;DP=59;DPB=59;DPRA=2.125;EPP=29.068;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=418;QR=1562;RO=47;RPL=12;RPP=29.068;RPPR=105.07;RPR=0;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:8:8,0:8:241:0:0:0,-2.40824,-21.9844 0/1:23:19,4:19:629:4:139:-5.929,0,-49.998 0/1:22:19,3:19:657:3:105:-3.1735,0,-52.831 0/1:6:1,5:1:35:5:174:-14.1958,0,-1.69245 dDocent_Contig_14952 166 . A T 80.8982 . AB=0.75;ABP=5.18177;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=17;DPB=17;DPRA=0.615385;EPP=9.52472;EPPR=33.4109;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=119;QR=562;RO=14;RPL=3;RPP=9.52472;RPPR=33.4109;RPR=0;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=33.4109;SRR=14;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 0/0:8:8,0:8:327:0:0:0,-2.40824,-29.8001 0/1:4:1,3:1:40:3:119:-9.89089,0,-2.79156 0/0:5:5,0:5:195:0:0:0,-1.50515,-17.921 dDocent_Contig_14953 47 . C A 582.98 . AB=0.325581;ABP=14.3727;AC=5;AF=0.625;AN=8;AO=21;CIGAR=1X;DP=50;DPB=50;DPRA=0;EPP=48.6112;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.47619;PAIREDR=0.75;PAO=0;PQA=0;PQR=0;PRO=0;QA=833;QR=1135;RO=28;RPL=0;RPP=48.6112;RPPR=63.8115;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:7:0,7:0:0:7:280:-25.5692,-2.10721,0 0/1:15:9,5:9:362:5:192:-13.2997,0,-28.6174 0/1:18:11,7:11:448:7:280:-20.1514,0,-35.2572 0/1:10:8,2:8:325:2:81:-4.67543,0,-26.6091 dDocent_Contig_14954 56 . A G 2320.18 . AB=0.703704;ABP=41.936;AC=4;AF=0.5;AN=8;AO=76;CIGAR=1X;DP=108;DPB=108;DPRA=0;EPP=168.042;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3007;QR=1271;RO=32;RPL=76;RPP=168.042;RPPR=72.4974;RPR=0;RUN=1;SAF=76;SAP=168.042;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:37:18,19:18:714:19:761:-57.6747,0,-53.4472 0/1:30:8,22:8:316:22:878:-70.3009,0,-19.7716 0/1:20:3,17:3:120:17:672:-54.7917,0,-5.1673 0/1:21:3,18:3:121:18:696:-56.6481,0,-4.95857 dDocent_Contig_14955 119 . C T 80.3817 . AB=0.185185;ABP=26.2531;AC=4;AF=0.5;AN=8;AO=6;CIGAR=1X;DP=29;DPB=29;DPRA=9.33333;EPP=16.0391;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=48;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=207;QR=801;RO=23;RPL=0;RPP=16.0391;RPPR=52.9542;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=52.9542;SRR=23;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:16,3:16:558:3:102:-3.75218,0,-44.8298 0/0:1:1,0:1:35:0:0:0,-0.30103,-3.49863 0/1:8:6,2:6:208:2:70:-4.20142,0,-16.6514 1/1:1:0,1:0:0:1:35:-3.47877,-0.30103,0 dDocent_Contig_14957 93 . A G 91.529 . AB=0.2;ABP=34.2795;AC=2;AF=0.25;AN=8;AO=8;CIGAR=1X;DP=83;DPB=83;DPRA=0.930233;EPP=20.3821;EPPR=165.871;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.375;PAIREDR=0.626667;PAO=0;PQA=0;PQR=0;PRO=0;QA=266;QR=2517;RO=75;RPL=8;RPP=20.3821;RPPR=165.871;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=75;SRP=165.871;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:23,5:23:775:5:170:-7.20587,0,-61.6335 0/1:12:9,3:9:285:3:96:-5.34492,0,-22.3455 0/0:29:29,0:29:976:0:0:0,-8.72987,-88.1452 0/0:14:14,0:14:481:0:0:0,-4.21442,-43.6183 dDocent_Contig_14959 36 . A T 39.0782 . AB=0.117647;ABP=67.7713;AC=2;AF=0.25;AN=8;AO=6;CIGAR=1X;DP=90;DPB=90;DPRA=1.30769;EPP=16.0391;EPPR=185.414;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.988095;PAO=0;PQA=0;PQR=0;PRO=0;QA=243;QR=3354;RO=84;RPL=0;RPP=16.0391;RPPR=185.414;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=84;SRP=185.414;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:21,3:21:854:3:120:-3.96259,0,-69.9452 0/0:21:21,0:21:853:0:0:0,-6.32163,-77.0793 0/0:18:18,0:18:696:0:0:0,-5.41854,-62.9612 0/1:27:24,3:24:951:3:123:-3.33698,0,-77.7646 dDocent_Contig_14960 40 . A G 37.4536 . AB=0.142857;ABP=26.2761;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=49;DPB=49;DPRA=2.25;EPP=9.52472;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=123;QR=1843;RO=46;RPL=0;RPP=9.52472;RPPR=102.898;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:18,3:18:720:3:123:-5.14316,0,-58.8023 0/0:18:18,0:18:720:0:0:0,-5.41854,-65.1255 0/0:5:5,0:5:205:0:0:0,-1.50515,-18.835 0/0:5:5,0:5:198:0:0:0,-1.50515,-18.1958 dDocent_Contig_14963 85 . T C 2892.11 . AB=0.727273;ABP=72.1026;AC=4;AF=0.5;AN=8;AO=112;CIGAR=1X;DP=154;DPB=154;DPRA=0;EPP=246.215;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.982143;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3797;QR=1544;RO=42;RPL=112;RPP=246.215;RPPR=94.2121;RPR=0;RUN=1;SAF=112;SAP=246.215;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:66:8,58:8:296:58:1869:-148.609,0,-7.12617 0/1:29:20,9:20:735:9:313:-19.7736,0,-57.7502 0/1:44:11,33:11:404:33:1195:-94.6076,0,-23.4614 0/1:15:3,12:3:109:12:420:-33.6196,0,-5.65255 dDocent_Contig_14964 29 . A T 723.193 . AB=0.288462;ABP=43.4331;AC=4;AF=0.5;AN=8;AO=30;CIGAR=1X;DP=104;DPB=104;DPRA=0;EPP=68.1545;EPPR=163.699;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1217;QR=2892;RO=74;RPL=0;RPP=68.1545;RPPR=163.699;RPR=30;RUN=1;SAF=30;SAP=68.1545;SAR=0;SRF=74;SRP=163.699;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:42:25,17:25:978:17:691:-49.8745,0,-75.6816 0/1:51:43,8:43:1675:8:323:-14.0858,0,-135.641 0/1:8:4,4:4:157:4:162:-12.5585,0,-12.1007 0/1:3:2,1:2:82:1:41:-3.19148,0,-6.87659 dDocent_Contig_14966 11 . A G 43.3246 . AB=0.111111;ABP=73.9451;AC=2;AF=0.25;AN=8;AO=8;CIGAR=1X;DP=115;DPB=115;DPRA=3.15152;EPP=20.3821;EPPR=218.311;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=0.875;PAIREDR=0.962617;PAO=0;PQA=0;PQR=0;PRO=0;QA=325;QR=4286;RO=107;RPL=0;RPP=20.3821;RPPR=235.358;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=105;SRP=218.311;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:50:48,2:48:1922:2:80:0,-7.45971,-165.588 0/1:24:22,2:22:871:2:82:-0.554958,0,-71.4762 0/1:30:26,4:26:1043:4:163:-6.02753,0,-85.1322 0/0:11:11,0:11:450:0:0:0,-3.31133,-40.8558 dDocent_Contig_14968 35 . T G 1031.52 . AB=0.5;ABP=3.0103;AC=4;AF=0.5;AN=8;AO=42;CIGAR=1X;DP=84;DPB=84;DPRA=0;EPP=94.2121;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=45.5952;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1641;QR=1685;RO=42;RPL=0;RPP=94.2121;RPPR=94.2121;RPR=42;RUN=1;SAF=42;SAP=94.2121;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:12,11:12:481:11:426:-20.4811,0,-36.7174 0/1:32:17,15:17:684:15:576:-41.5405,0,-52.2549 0/1:12:4,8:4:160:8:320:-25.0728,0,-11.1711 0/1:17:9,8:9:360:8:319:-23.4555,0,-27.6457 dDocent_Contig_14969 109 . C T 3626.41 . AB=0.375262;ABP=67.4762;AC=4;AF=0.5;AN=8;AO=179;CIGAR=1X;DP=477;DPB=477;DPRA=0;EPP=391.704;EPPR=619.708;GTI=0;LEN=1;MEANALT=1.75;MQM=46.2737;MQMR=54.0599;NS=4;NUMALT=1;ODDS=2.77556e-17;PAIRED=0.357542;PAIREDR=0.126761;PAO=0;PQA=0;PQR=0;PRO=0;QA=6066;QR=9370;RO=284;RPL=0;RPP=391.704;RPPR=619.708;RPR=179;RUN=1;SAF=0;SAP=391.704;SAR=179;SRF=0;SRP=619.708;SRR=284;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:168:94,69:94:3168:69:2308:-144.365,0,-230.949 0/1:161:80,76:80:2602:76:2593:-168.495,0,-178.05 0/1:82:61,17:61:2017:17:579:-24.9998,0,-153.229 0/1:66:49,17:49:1583:17:586:-32.1788,0,-118.616 dDocent_Contig_14970 18 . T C 234.728 . AB=0.161616;ABP=101.472;AC=4;AF=0.5;AN=8;AO=16;CIGAR=1X;DP=99;DPB=99;DPRA=0;EPP=37.7539;EPPR=183.243;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.8193;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.53012;PAO=0;PQA=0;PQR=0;PRO=0;QA=651;QR=3316;RO=83;RPL=0;RPP=37.7539;RPPR=183.243;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=83;SRP=183.243;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:27,4:27:1074:4:163:-5.7265,0,-87.6107 0/1:31:25,6:25:997:6:244:-13.0069,0,-80.6938 0/1:29:24,5:24:963:5:205:-10.1051,0,-78.2116 0/1:8:7,1:7:282:1:39:-1.48832,0,-23.3438 dDocent_Contig_14971 106 . N G 44.3276 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=4;CIGAR=2X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=12;MQMR=0;NS=1;NUMALT=1;ODDS=7.37776;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=140;QR=0;RO=0;RPL=0;RPP=11.6962;RPPR=0;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:4:0,4:0:0:4:140:-4.43247,-1.20412,0 .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. dDocent_Contig_14972 129 . G T 177.429 . AB=0.470588;ABP=3.13803;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=24;DPB=24;DPRA=1.21429;EPP=20.3821;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=285;QR=565;RO=16;RPL=0;RPP=20.3821;RPPR=37.7539;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=37.7539;SRR=16;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 0/1:15:8,7:8:279:7:248:-18.1474,0,-20.9322 0/0:7:7,0:7:249:0:0:0,-2.10721,-22.7529 0/1:2:1,1:1:37:1:37:-3.09577,0,-3.09577 dDocent_Contig_14973 23 . T A 53.0457 . AB=0.125;ABP=61.6401;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=357;DPB=357;DPRA=0.466019;EPP=16.0391;EPPR=765.197;GTI=0;LEN=1;MEANALT=1;MQM=44;MQMR=59.698;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.760684;PAO=0;PQA=0;PQR=0;PRO=0;QA=244;QR=14012;RO=351;RPL=0;RPP=16.0391;RPPR=765.197;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=351;SRP=765.197;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:98:98,0:98:3946:0:0:0,-29.5009,-355.122 0/0:136:136,0:136:5414:0:0:0,-40.9401,-486.73 0/0:75:75,0:75:2987:0:0:0,-22.5772,-268.861 0/1:48:42,6:42:1665:6:244:-7.00354,0,-135.469 dDocent_Contig_14974 46 . G T 60.8628 . AB=0.181818;ABP=22.3561;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=46;DPB=46;DPRA=1.83333;EPP=11.6962;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=154;QR=1688;RO=42;RPL=0;RPP=11.6962;RPPR=94.2121;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:18,4:18:717:4:154:-7.60913,0,-58.2333 0/0:18:18,0:18:729:0:0:0,-5.41854,-65.9338 0/0:6:6,0:6:242:0:0:0,-1.80618,-22.1571 ./.:.:.:.:.:.:.:. dDocent_Contig_14976 16 . T G 823.263 . AB=0.12;ABP=34.3664;AC=0;AF=0;AN=8;AO=3;CIGAR=1M2D1M2X1M1X1M1D17M2X2M;DP=70;DPB=69.129;DPRA=0;EPP=9.52472;EPPR=57.2971;GTI=0;LEN=1;MEANALT=4;MQM=40;MQMR=60;NS=4;NUMALT=5;ODDS=0;PAIRED=0;PAIREDR=0.96;PAO=0;PQA=0;PQR=0;PRO=0;QA=114;QR=977;RO=25;RPL=0;RPP=9.52472;RPPR=57.2971;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:18:7,5,0,0,0,5:7:266:5,0,0,0,5:200,0,0,0,201:-14.4648,-0.741934,-21.0393,-16.572,-22.5444,-38.3794,-16.572,-22.5444,-38.3794,-38.3794,-16.572,-22.5444,-38.3794,-38.3794,-38.3794,0,-5.9718,-21.8097,-21.8097,-21.8097,-20.3046 0|0:25:5,0,0,3,4,12:5:197:0,0,3,4,12:0,0,114,157,489:-38.8527,-40.3579,-56.5647,-40.3579,-56.5647,-56.5647,-31.5861,-47.7913,-47.7913,-46.8882,-27.4462,-43.6526,-43.6526,-34.8805,-42.4485,0,-16.2124,-16.2124,-7.442,-3.29674,-12.6 0|0:21:11,0,2,0,0,8:11:435:0,2,0,0,8:0,81,0,0,320:-23.0437,-26.355,-62.1508,-19.6749,-55.4709,-54.8689,-26.355,-62.1508,-55.4709,-62.1508,-26.355,-62.1508,-55.4709,-62.1508,-62.1508,0,-35.7907,-29.11,-35.7907,-35.7907,-33.3824 0|0:6:2,0,0,0,0,4:2:79:0,0,0,0,4:0,0,0,0,164:-13.3437,-13.9458,-20.4418,-13.9458,-20.4418,-20.4418,-13.9458,-20.4418,-20.4418,-20.4418,-13.9458,-20.4418,-20.4418,-20.4418,-20.4418,0,-6.89557,-6.89557,-6.89557,-6.89557,-5.69145 dDocent_Contig_14978 11 . T C 1523.99 . AB=0.530612;ABP=3.80798;AC=4;AF=0.5;AN=8;AO=52;CIGAR=1X;DP=98;DPB=98;DPRA=0;EPP=115.927;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2088;QR=1785;RO=46;RPL=0;RPP=115.927;RPPR=102.898;RPR=52;RUN=1;SAF=52;SAP=115.927;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:11,19:11:433:19:773:-60.8578,0,-30.2927 0/1:29:13,16:13:491:16:646:-49.744,0,-35.7991 0/1:18:4,14:4:152:14:548:-44.2362,0,-8.62949 0/1:21:18,3:18:709:3:121:-4.95857,0,-57.8194 dDocent_Contig_14979 14 . C T 128.492 . AB=0.5;ABP=3.0103;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=49;DPB=49;DPRA=0.769231;EPP=13.8677;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=191;QR=1742;RO=44;RPL=0;RPP=13.8677;RPPR=98.5551;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:20:20,0:20:780:0:0:0,-6.0206,-70.504 0/0:16:16,0:16:637:0:0:0,-4.81648,-57.6616 0/1:10:5,5:5:203:5:191:-14.5481,0,-15.6425 0/0:3:3,0:3:122:0:0:0,-0.90309,-11.3725 dDocent_Contig_14980 103 . N T 201.459 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=6;CIGAR=4X;DP=6;DPB=6;DPRA=0;EPP=16.0391;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=54.6667;MQMR=0;NS=3;NUMALT=1;ODDS=1.69407e-21;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=206;QR=0;RO=0;RPL=0;RPP=16.0391;RPPR=0;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:3:0,3:0:0:3:100:-9.30868,-0.90309,0 .:.:.:.:.:.:.:. 1|1:2:0,2:0:0:2:71:-6.73763,-0.60206,0 1|1:1:0,1:0:0:1:35:-3.49656,-0.30103,0 dDocent_Contig_14981 128 . C T 541.583 . AB=0.583333;ABP=3.73412;AC=3;AF=0.5;AN=6;AO=19;CIGAR=1X;DP=30;DPB=30;DPRA=2.5;EPP=44.2683;EPPR=26.8965;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=690;QR=377;RO=11;RPL=0;RPP=44.2683;RPPR=26.8965;RPR=19;RUN=1;SAF=0;SAP=44.2683;SAR=19;SRF=0;SRP=26.8965;SRR=11;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5,0:5:173:0:0:0,-1.50515,-15.9102 1/1:13:1,12:1:35:12:437:-36.1735,-0.414761,0 0/1:12:5,7:5:169:7:253:-19.5071,0,-11.9303 ./.:.:.:.:.:.:.:. dDocent_Contig_14982 88 . C T 64.9748 . AB=0.235294;ABP=13.3567;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=33;DPB=33;DPRA=3.1875;EPP=11.6962;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=144;QR=990;RO=29;RPL=4;RPP=11.6962;RPPR=65.983;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:10:10,0:10:351:0:0:0,-3.0103,-31.9271 0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9448 0/1:17:13,4:13:427:4:144:-8.19611,0,-33.6256 0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672 dDocent_Contig_14983 107 . N A 505.233 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=16;CIGAR=1X;DP=16;DPB=16;DPRA=0;EPP=37.7539;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=545;QR=0;RO=0;RPL=0;RPP=37.7539;RPPR=0;RPR=16;RUN=1;SAF=0;SAP=37.7539;SAR=16;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:6:0,6:0:0:6:212:-19.4251,-1.80618,0 1/1:4:0,4:0:0:4:128:-11.8362,-1.20412,0 1/1:6:0,6:0:0:6:205:-18.7847,-1.80618,0 ./.:.:.:.:.:.:.:. dDocent_Contig_14984 53 . C T 186.512 . AB=0.141509;ABP=121.335;AC=3;AF=0.5;AN=6;AO=15;CIGAR=1X;DP=106;DPB=106;DPRA=0;EPP=35.5824;EPPR=200.614;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=596;QR=3559;RO=91;RPL=15;RPP=35.5824;RPPR=200.614;RPR=0;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=91;SRP=200.614;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:71:65,6:65:2541:6:241:-0.692964,0,-207.464 0/1:23:19,4:19:745:4:159:-7.76714,0,-60.4471 0/1:12:7,5:7:273:5:196:-14.3999,0,-21.3233 ./.:.:.:.:.:.:.:. dDocent_Contig_14985 46 . T G 4499.52 . AB=0.569395;ABP=14.7641;AC=5;AF=0.625;AN=8;AO=160;CIGAR=6M1X3M1D1M;DP=281;DPB=260.333;DPRA=0;EPP=350.446;EPPR=141.985;GTI=0;LEN=1;MEANALT=4.5;MQM=50.45;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=0.96875;PAO=0;PQA=0;PQR=0;PRO=0;QA=6197;QR=2420;RO=64;RPL=0;RPP=350.446;RPPR=141.985;RPR=160;RUN=1;SAF=160;SAP=350.446;SAR=0;SRF=64;SRP=141.985;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:98:36,16,0,46:36:1350:16,0,46:624,0,1769:-115.465,-98.4119,-204.186,-126.303,-209.002,-236.901,0,-82.8026,-110.676,-96.8291 0|1:83:17,8,0,54:17:655:8,0,54:309,0,2098:-140.22,-132.52,-183.909,-145.337,-186.318,-199.136,0,-41.0915,-53.8831,-37.6275 1|1:79:7,1,20,46:7:261:1,20,46:38,733,1787:-160.875,-161.759,-182.826,-103.067,-123.215,-118.418,-38.5634,-58.7155,0,-46.0886 0|1:21:4,1,0,14:4:154:1,0,14:38,0,543:-40.7896,-40.3325,-52.6815,-41.9937,-52.9825,-54.645,0,-11.0604,-12.7104,-8.49595 dDocent_Contig_14987 98 . N T 105.434 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=3;CIGAR=2X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=106;QR=0;RO=0;RPL=3;RPP=9.52472;RPPR=0;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. 1|1:2:0,2:0:0:2:71:-6.74206,-0.60206,0 1|1:1:0,1:0:0:1:35:-3.49863,-0.30103,0 .:.:.:.:.:.:.:. dDocent_Contig_14988 16 . T C 851.861 . AB=0.636364;ABP=8.34028;AC=6;AF=0.75;AN=8;AO=27;CIGAR=1X;DP=39;DPB=39;DPRA=0;EPP=61.6401;EPPR=29.068;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1078;QR=463;RO=12;RPL=0;RPP=61.6401;RPPR=29.068;RPR=27;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=12;SRP=29.068;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:4:0,4:0:0:4:161:-14.8755,-1.20412,0 0/1:18:7,11:7:264:11:444:-34.8976,0,-18.6962 0/1:15:5,10:5:199:10:391:-31.0309,0,-13.772 1/1:2:0,2:0:0:2:82:-7.77968,-0.60206,0 dDocent_Contig_14989 205 . G T 72.3658 . AB=0.142857;ABP=10.7656;AC=3;AF=0.5;AN=6;AO=3;CIGAR=1X;DP=16;DPB=16;DPRA=0.642857;EPP=9.52472;EPPR=31.2394;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=109;QR=474;RO=13;RPL=3;RPP=9.52472;RPPR=31.2394;RPR=0;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=31.2394;SRR=13;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:7:7,0:7:254:0:0:0,-2.10721,-23.2103 ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:74:-7.02588,-0.60206,0 0/1:7:6,1:6:220:1:35:-1.39142,0,-18.0483 dDocent_Contig_14990 78 . T C 98.9767 . AB=0.384615;ABP=4.51363;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=34;DPB=34;DPRA=1.2381;EPP=13.8677;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=170;QR=838;RO=29;RPL=5;RPP=13.8677;RPPR=65.983;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:18:18,0:18:527:0:0:0,-5.41854,-47.7156 0/1:13:8,5:8:219:5:170:-11.7214,0,-16.0669 0/0:3:3,0:3:92:0:0:0,-0.90309,-8.58509 ./.:.:.:.:.:.:.:. dDocent_Contig_14991 49 . T A 819.251 . AB=0.1;ABP=30.8051;AC=0;AF=0;AN=8;AO=2;CIGAR=3M1X5M1X5M;DP=67;DPB=67.2;DPRA=0;EPP=7.35324;EPPR=50.7827;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=4;NUMALT=5;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=80;QR=863;RO=22;RPL=2;RPP=7.35324;RPPR=50.7827;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:20:3,2,0,0,13,2:3:119:2,0,0,13,2:80,0,0,496,78:-39.7726,-34.0835,-43.2798,-40.6757,-43.8818,-50.4735,-40.6757,-43.8818,-50.4735,-50.4735,0,-3.20489,-9.79675,-9.79675,-5.88336,-34.2632,-37.4695,-44.0614,-44.0614,-3.38726,-43.4593 0|0:24:8,0,9,3,3,0:8:316:0,9,3,3,0:0,348,122,122,0:-26.1884,-28.5966,-54.6063,0,-26.0217,-23.3124,-18.5261,-44.5395,-15.9515,-43.6364,-18.5261,-44.5395,-15.9515,-34.4715,-43.6364,-28.5966,-54.6063,-26.0217,-44.5395,-44.5395,-54.6063 0|0:15:7,0,1,2,4,1:7:269:0,1,2,4,1:0,40,74,162,39:-11.2623,-13.3695,-35.4459,-10.0735,-32.15,-31.849,-7.32341,-29.3949,-26.0992,-28.7928,0,-22.0819,-18.7852,-16.031,-20.8778,-10.1641,-32.2399,-28.944,-26.1892,-18.8754,-31.9389 0|0:8:4,0,0,0,4,0:4:159:0,0,0,4,0:0,0,0,157,0:-12.0996,-13.3038,-26.3974,-13.3038,-26.3974,-26.3974,-13.3038,-26.3974,-26.3974,-26.3974,0,-13.4882,-13.4882,-13.4882,-12.2841,-13.3038,-26.3974,-26.3974,-26.3974,-13.4882,-26.3974 dDocent_Contig_14992 10 . G A 601.3 . AB=0.338028;ABP=19.1893;AC=4;AF=0.5;AN=8;AO=24;CIGAR=1X;DP=71;DPB=71;DPRA=0;EPP=55.1256;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.75;PAIREDR=0.553191;PAO=0;PQA=0;PQR=0;PRO=0;QA=971;QR=1821;RO=47;RPL=0;RPP=55.1256;RPPR=105.07;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:10,5:10:386:5:204:-14.2286,0,-30.572 0/1:17:10,7:10:394:7:285:-20.9069,0,-30.697 0/1:18:12,6:12:464:6:244:-16.9203,0,-36.6788 0/1:21:15,6:15:577:6:238:-15.4721,0,-45.9296 dDocent_Contig_14995 34 . A G 58.4036 . 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A G 48.5574 . AB=0.230769;ABP=11.1951;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=28;DPB=28;DPRA=2.6;EPP=9.52472;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=109;QR=967;RO=25;RPL=3;RPP=9.52472;RPPR=57.2971;RPR=0;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=57.2971;SRR=25;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:10,3:10:393:3:109:-6.25285,0,-31.8095 0/0:12:12,0:12:452:0:0:0,-3.61236,-41.0099 0/0:1:1,0:1:40:0:0:0,-0.30103,-3.99568 0/0:2:2,0:2:82:0:0:0,-0.60206,-7.77968 dDocent_Contig_14998 21 . T A 94.3281 . AB=0.653846;ABP=13.7006;AC=4;AF=0.5;AN=8;AO=34;CIGAR=1X2M1X3M1X1M1X2M1X;DP=52;DPB=52;DPRA=0;EPP=76.8404;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1.25;MQM=7.97059;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0.875;PAO=0;PQA=0;PQR=0;PRO=0;QA=1307;QR=638;RO=16;RPL=0;RPP=76.8404;RPPR=37.7539;RPR=34;RUN=1;SAF=34;SAP=76.8404;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:12:5,7,0:5:200:7,0:273,0:-1.50574,0,-14.7678,-3.01089,-16.875,-19.6195 1|0:9:0,7,2:0:0:7,2:270,79:-9.58097,-6.89557,-4.78836,-3.01009,0,-2.40803 0|1:18:7,11,0:7:279:11,0:424,0:-2.48717,0,-20.0632,-4.59438,-23.3745,-27.6948 0|1:13:4,9,0:4:159:9,0:340,0:-2.64307,0,-10.7789,-3.84719,-13.4882,-17.0359 dDocent_Contig_15000 137 . G C 741.057 . AB=0.418605;ABP=7.95924;AC=4;AF=0.5;AN=8;AO=36;CIGAR=1X;DP=86;DPB=86;DPRA=0;EPP=81.1833;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1179;QR=1729;RO=50;RPL=0;RPP=81.1833;RPPR=111.584;RPR=36;RUN=1;SAF=0;SAP=81.1833;SAR=36;SRF=0;SRP=111.584;SRR=50;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:17,8:17:592:8:263:-16.4647,0,-46.0821 0/1:16:11,5:11:376:5:170:-10.8181,0,-29.3533 0/1:29:15,14:15:517:14:452:-32.2595,0,-38.1279 0/1:16:7,9:7:244:9:294:-21.9614,0,-17.4836 dDocent_Contig_15001 17 . C T 88.2628 . AB=0.185185;ABP=26.2531;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=141;DPB=141;DPRA=1.71154;EPP=20.3821;EPPR=289.645;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.875;PAIREDR=0.909091;PAO=0;PQA=0;PQR=0;PRO=0;QA=326;QR=5249;RO=132;RPL=0;RPP=20.3821;RPPR=289.645;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=132;SRP=289.645;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:23:22,0:22:894:0:0:0,-6.62266,-80.3562 0/0:29:29,0:29:1140:0:0:0,-8.72987,-102.871 0/0:62:59,3:59:2371:3:123:0,-7.19907,-202.074 0/1:27:22,5:22:844:5:203:-10.5252,0,-68.1378 dDocent_Contig_15002 139 . C T 36.3262 . AB=0.4;ABP=3.44459;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=45;DPB=45;DPRA=1.5;EPP=9.52472;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.97619;PAO=0;PQA=0;PQR=0;PRO=0;QA=107;QR=1457;RO=42;RPL=0;RPP=9.52472;RPPR=94.2121;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=94.2121;SRR=42;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:22:21,1:21:738:1:35:0,-3.12403,-63.242 0/0:8:8,0:8:260:0:0:0,-2.40824,-23.7133 0/0:10:10,0:10:353:0:0:0,-3.0103,-32.1084 0/1:5:3,2:3:106:2:72:-5.33149,0,-8.38386 dDocent_Contig_15003 12 . C T 515.68 . AB=0.447368;ABP=3.9246;AC=1;AF=0.125;AN=8;AO=17;CIGAR=1X1M1I13M;DP=57;DPB=57.6;DPRA=5.84615;EPP=39.9253;EPPR=76.8404;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=662;QR=1362;RO=34;RPL=0;RPP=39.9253;RPPR=76.8404;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:38:17,17,2:17:680:17,2:662,78:-49.2739,0,-50.8983,-47.9805,-49.6057,-103.398 0|0:11:11,0,0:11:441:0,0:0,0:0,-3.31133,-40.0467,-3.31133,-40.0467,-40.0467 0|0:6:4,0,2:4:161:0,2:0,79:-5.69145,-6.89557,-20.1698,0,-13.6714,-13.0693 0|0:2:2,0,0:2:80:0,0:0,0:0,-0.60206,-7.59179,-0.60206,-7.59179,-7.59179 dDocent_Contig_15004 79 . T C 73.8179 . AB=0.428571;ABP=3.32051;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=27;DPB=27;DPRA=1.05;EPP=9.52472;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=0.833333;PAO=0;PQA=0;PQR=0;PRO=0;QA=120;QR=917;RO=24;RPL=3;RPP=9.52472;RPPR=55.1256;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:2:2,0:2:78:0:0:0,-0.60206,-7.40347 0/1:7:4,3:4:163:3:120:-9.08048,0,-12.9512 0/0:8:8,0:8:303:0:0:0,-2.40824,-27.6199 0/0:10:10,0:10:373:0:0:0,-3.0103,-33.9198 dDocent_Contig_15006 16 . C G 38.9796 . AB=0.333333;ABP=4.45795;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X;DP=45;DPB=45;DPRA=0.461538;EPP=7.35324;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=78;QR=1714;RO=43;RPL=0;RPP=7.35324;RPPR=96.3836;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:29:29,0:29:1145:0:0:0,-8.72987,-103.329 0/1:6:4,2:4:163:2:78:-5.5966,0,-13.2522 0/0:2:2,0:2:82:0:0:0,-0.60206,-7.77968 0/0:8:8,0:8:324:0:0:0,-2.40824,-29.5292 dDocent_Contig_15007 20 . G A 135.119 . AB=0.152542;ABP=64.8789;AC=2;AF=0.25;AN=8;AO=10;CIGAR=1X;DP=86;DPB=86;DPRA=9.22222;EPP=24.725;EPPR=168.042;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.986842;PAO=0;PQA=0;PQR=0;PRO=0;QA=407;QR=3044;RO=76;RPL=0;RPP=24.725;RPPR=168.042;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=76;SRP=168.042;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:35:32,3:32:1282:3:121:-0.743936,0,-105.107 0/0:24:23,1:23:927:1:41:0,-3.13015,-79.6369 0/1:24:18,6:18:718:6:245:-15.2048,0,-57.7224 0/0:3:3,0:3:117:0:0:0,-0.90309,-10.9098 dDocent_Contig_15008 13 . T C 251.277 . AB=0.3;ABP=6.48466;AC=3;AF=0.375;AN=8;AO=8;CIGAR=2X;DP=26;DPB=26;DPRA=1.6;EPP=20.3821;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=324;QR=685;RO=17;RPL=0;RPP=20.3821;RPPR=39.9253;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:6:0,5:0:0:5:201:-18.071,-1.50515,0 0|0:7:7,0:7:284:0:0:0,-2.10721,-25.9338 0|0:3:3,0:3:115:0:0:0,-0.90309,-10.7224 0|1:10:7,3:7:286:3:123:-8.45449,0,-23.1045 dDocent_Contig_15009 30 . T A 351.678 . AB=0.6;ABP=4.74748;AC=2;AF=0.25;AN=8;AO=12;CIGAR=1X;DP=35;DPB=35;DPRA=1.33333;EPP=29.068;EPPR=37.093;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=0.695652;PAO=0;PQA=0;PQR=0;PRO=0;QA=487;QR=885;RO=23;RPL=0;RPP=29.068;RPPR=52.9542;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=21;SRP=37.093;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:6,10:6:241:10:406:-32.0841,0,-17.25 0/0:7:7,0:7:261:0:0:0,-2.10721,-23.8407 0/1:4:2,2:2:81:2:81:-6.48161,0,-6.48161 0/0:8:8,0:8:302:0:0:0,-2.40824,-27.5355 dDocent_Contig_15013 51 . T A 217.502 . AB=0.291667;ABP=12.0581;AC=2;AF=0.25;AN=8;AO=7;CIGAR=7M1X3M;DP=60;DPB=60.3636;DPRA=0.923077;EPP=18.2106;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=283;QR=1901;RO=49;RPL=0;RPP=18.2106;RPPR=109.412;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:16:10,0,6:10:386:0,6:0,243:-17.4311,-20.4414,-52.1286,0,-32.0846,-30.2784 0|1:8:7,0,1:7:269:0,1:0,40:-1.58744,-3.69465,-25.7601,0,-22.4631,-22.162 0|0:23:19,4,0:19:750:4,0:158,0:-7.67696,0,-60.9034,-13.3965,-62.1075,-75.1095 0|0:13:13,0,0:13:496:0,0:0,0:0,-3.91339,-44.9813,-3.91339,-44.9813,-44.9813 dDocent_Contig_15016 35 . T C 1723.9 . AB=0.782609;ABP=50.8771;AC=2;AF=0.333333;AN=6;AO=54;CIGAR=1X;DP=84;DPB=84;DPRA=2.3;EPP=120.27;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2179;QR=1179;RO=30;RPL=0;RPP=120.27;RPPR=68.1545;RPR=54;RUN=1;SAF=54;SAP=120.27;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:61:12,49:12:469:49:1977:-159.759,0,-24.1933 ./.:.:.:.:.:.:.:. 0/0:15:15,0:15:592:0:0:0,-4.51545,-53.6182 0/1:8:3,5:3:118:5:202:-16.1538,0,-8.59427 dDocent_Contig_15017 45 . T C 372.585 . AB=0.52;ABP=3.09716;AC=2;AF=0.25;AN=8;AO=14;CIGAR=1X;DP=74;DPB=74;DPRA=0.694444;EPP=33.4109;EPPR=133.299;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=567;QR=2415;RO=60;RPL=0;RPP=33.4109;RPPR=133.299;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:25:24,1:24:973:1:40:0,-3.53007,-83.8725 0/0:24:24,0:24:953:0:0:0,-7.22472,-86.066 0/1:15:8,7:8:325:7:284:-21.4185,0,-25.104 0/1:10:4,6:4:164:6:243:-19.2379,0,-12.1396 dDocent_Contig_15019 8 . T C 665.63 . AB=0.391304;ABP=10.0912;AC=4;AF=0.5;AN=8;AO=27;CIGAR=1X;DP=69;DPB=69;DPRA=0;EPP=61.6401;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=58.3704;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1040;QR=1585;RO=42;RPL=0;RPP=61.6401;RPPR=94.2121;RPR=27;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:12,2:12:453:2:78:-3.18905,0,-36.9023 0/1:26:17,9:17:642:9:345:-23.5818,0,-50.286 0/1:13:7,6:7:262:6:229:-17.0059,0,-20.0249 0/1:16:6,10:6:228:10:388:-30.1772,0,-16.067 dDocent_Contig_15020 28 . T A 173.9 . AB=0;ABP=0;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X2M1X;DP=25;DPB=25;DPRA=0.5;EPP=13.8677;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=58;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=184;QR=799;RO=20;RPL=0;RPP=13.8677;RPPR=46.4397;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:5:0,5:0:0:5:184:-16.9128,-1.50515,0 0|0:13:13,0:13:518:0:0:0,-3.91339,-46.9671 .:.:.:.:.:.:.:. 0|0:7:7,0:7:281:0:0:0,-2.10721,-25.6621 dDocent_Contig_15021 15 . C T 769.944 . AB=0.446154;ABP=4.64726;AC=4;AF=0.5;AN=8;AO=29;CIGAR=1X;DP=65;DPB=65;DPRA=0;EPP=65.983;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1139;QR=1446;RO=36;RPL=0;RPP=65.983;RPPR=81.1833;RPR=29;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:19,3:19:750:3:117:-4.28663,0,-61.1958 0/1:8:4,4:4:164:4:157:-12.1001,0,-12.7417 0/1:30:11,19:11:450:19:751:-58.8793,0,-31.8249 0/1:5:2,3:2:82:3:114:-9.12577,0,-6.27453 dDocent_Contig_15024 22 . A T 296.362 . AB=0.24;ABP=17.6895;AC=4;AF=0.5;AN=8;AO=12;CIGAR=1X;DP=38;DPB=38;DPRA=1.47619;EPP=29.068;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.961538;PAO=0;PQA=0;PQR=0;PRO=0;QA=438;QR=1010;RO=26;RPL=0;RPP=29.068;RPPR=59.4686;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:14,2:14:545:2:73:-2.11482,0,-44.5765 0/0:7:7,0:7:272:0:0:0,-2.10721,-24.8451 0/1:9:5,4:5:193:4:147:-10.8758,0,-15.0298 1/1:6:0,6:0:0:6:218:-19.9673,-1.80618,0 dDocent_Contig_15025 91 . G A 334.44 . AB=0.380952;ABP=8.18047;AC=3;AF=0.5;AN=6;AO=16;CIGAR=1X;DP=42;DPB=42;DPRA=0;EPP=37.7539;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=562;QR=917;RO=26;RPL=16;RPP=37.7539;RPPR=59.4686;RPR=0;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 0/1:22:16,6:16:567:6:216:-13.1679,0,-44.7393 0/1:14:7,7:7:243:7:242:-17.9024,0,-17.9935 0/1:6:3,3:3:107:3:104:-7.89663,0,-8.17599 dDocent_Contig_15027 98 . N A 113.097 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=3;CIGAR=10X6I2M;DP=3;DPB=4.5;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0.666667;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=114;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:2:0,2:0:0:2:77:-7.30914,-0.60206,0 .:.:.:.:.:.:.:. 1|1:1:0,1:0:0:1:37:-3.69783,-0.30103,0 .:.:.:.:.:.:.:. dDocent_Contig_15028 95 . G A 539.514 . 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A T 657.271 . AB=0.454545;ABP=3.99733;AC=4;AF=0.5;AN=8;AO=25;CIGAR=1X;DP=55;DPB=55;DPRA=0;EPP=57.2971;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.88;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=980;QR=1174;RO=30;RPL=0;RPP=57.2971;RPPR=68.1545;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:12,5:12:465:5:193:-12.6233,0,-37.0795 0/1:19:8,11:8:321:11:427:-33.06,0,-23.5389 0/1:9:6,3:6:235:3:119:-8.38574,0,-18.8118 0/1:10:4,6:4:153:6:241:-19.056,0,-11.131 dDocent_Contig_15036 18 . T A 31.8449 . AB=0.285714;ABP=5.80219;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X;DP=66;DPB=66;DPRA=0.355932;EPP=3.0103;EPPR=125.156;GTI=0;LEN=1;MEANALT=1;MQM=51;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.9375;PAO=0;PQA=0;PQR=0;PRO=0;QA=74;QR=2380;RO=64;RPL=0;RPP=7.35324;RPPR=141.985;RPR=2;RUN=1;SAF=1;SAP=3.0103;SAR=1;SRF=62;SRP=125.156;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:16:16,0:16:594:0:0:0,-4.81648,-53.7919 0/0:39:39,0:39:1469:0:0:0,-11.7402,-132.479 0/1:7:5,2:5:163:2:74:-4.88311,0,-12.8799 0/0:4:4,0:4:154:0:0:0,-1.20412,-14.2335 dDocent_Contig_15037 89 . G C 893.057 . AB=0.5;ABP=3.0103;AC=5;AF=0.625;AN=8;AO=33;CIGAR=1X;DP=55;DPB=55;DPRA=0;EPP=74.6689;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.545455;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1184;QR=800;RO=22;RPL=33;RPP=74.6689;RPPR=50.7827;RPR=0;RUN=1;SAF=33;SAP=74.6689;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:9,8:9:331:8:293:-21.604,0,-25.0233 0/1:11:3,8:3:102:8:294:-23.5011,0,-6.20436 0/1:16:10,6:10:367:6:218:-15.1564,0,-28.5619 1/1:11:0,11:0:0:11:379:-34.4422,-3.31133,0 dDocent_Contig_15038 97 . A G 62.6119 . AB=0.2;ABP=18.6449;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=73;DPB=73;DPRA=1.13208;EPP=11.6962;EPPR=152.842;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.695652;PAO=0;PQA=0;PQR=0;PRO=0;QA=148;QR=2541;RO=69;RPL=2;RPP=3.0103;RPPR=3.29354;RPR=2;RUN=1;SAF=2;SAP=3.0103;SAR=2;SRF=36;SRP=3.29354;SRR=33;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:16,4:16:578:4:148:-7.65913,0,-46.3247 0/0:14:14,0:14:517:0:0:0,-4.21442,-46.8664 0/0:21:21,0:21:775:0:0:0,-6.32163,-70.0696 0/0:18:18,0:18:671:0:0:0,-5.41854,-60.7158 dDocent_Contig_15039 193 . G A 257.503 . AB=0.3;ABP=6.48466;AC=5;AF=0.625;AN=8;AO=8;CIGAR=1X;DP=25;DPB=25;DPRA=0.5;EPP=20.3821;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=322;QR=673;RO=17;RPL=8;RPP=20.3821;RPPR=39.9253;RPR=0;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=39.9253;SRR=17;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:4:0,4:0:0:4:159:-14.6908,-1.20412,0 1/1:1:0,1:0:0:1:41:-4.09457,-0.30103,0 0/1:10:7,3:7:277:3:122:-8.36219,0,-22.2877 0/0:10:10,0:10:396:0:0:0,-3.0103,-35.9971 dDocent_Contig_15040 22 . C T 133.194 . AB=0.115152;ABP=215.275;AC=3;AF=0.375;AN=8;AO=19;CIGAR=1X;DP=229;DPB=229;DPRA=0.859375;EPP=44.2683;EPPR=459.02;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.990476;PAO=0;PQA=0;PQR=0;PRO=0;QA=721;QR=8411;RO=210;RPL=0;RPP=44.2683;RPPR=459.02;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=210;SRP=459.02;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:64:64,0:64:2584:0:0:0,-19.2659,-232.685 0/1:61:51,10:51:2055:10:367:-15.0075,0,-166.768 0/1:70:64,6:64:2532:6:235:-0.449231,0,-206.931 0/1:34:31,3:31:1240:3:119:-0.860375,0,-101.634 dDocent_Contig_15041 12 . G T 36.8899 . AB=0.176471;ABP=18.4661;AC=2;AF=0.25;AN=8;AO=3;CIGAR=1X;DP=32;DPB=32;DPRA=1.13333;EPP=9.52472;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=121;QR=1140;RO=29;RPL=0;RPP=9.52472;RPPR=65.983;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5,0:5:197:0:0:0,-1.50515,-18.1049 0/0:10:10,0:10:397:0:0:0,-3.0103,-36.0886 0/1:8:6,2:6:238:2:82:-5.37144,0,-19.3859 0/1:9:8,1:8:308:1:39:-1.18729,0,-25.3644 dDocent_Contig_15042 20 . G A 166.258 . AB=0.545455;ABP=3.20771;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=36;DPB=36;DPRA=1.32;EPP=16.0391;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=233;QR=1158;RO=30;RPL=0;RPP=16.0391;RPPR=68.1545;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:5,6:5:194:6:233:-18.0237,0,-14.5172 0/0:5:5,0:5:204:0:0:0,-1.50515,-18.744 0/0:9:9,0:9:348:0:0:0,-2.70927,-31.6729 0/0:11:11,0:11:412:0:0:0,-3.31133,-37.4166 dDocent_Contig_15043 127 . T C 5046.62 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=300;CIGAR=3X;DP=324;DPB=324;DPRA=0;EPP=628.655;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1.25;MQM=22.17;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=11440;QR=755;RO=21;RPL=0;RPP=654.452;RPPR=48.6112;RPR=300;RUN=1;SAF=297;SAP=628.655;SAR=3;SRF=0;SRP=48.6112;SRR=21;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:100:9,91:9:325:91:3467:-137.047,-0.506441,0 1|1:111:8,103:8:286:103:3936:-170.849,-7.32884,0 1|1:68:0,65:0:0:65:2465:-132.771,-19.567,0 1|1:45:4,41:4:144:41:1572:-63.3919,-0.232733,0 dDocent_Contig_15044 24 . T C 353.614 . AB=0.565217;ABP=3.86001;AC=3;AF=0.375;AN=8;AO=13;CIGAR=1X;DP=36;DPB=36;DPRA=0.589744;EPP=31.2394;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=59.2308;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=0.230769;PAIREDR=0.695652;PAO=0;PQA=0;PQR=0;PRO=0;QA=517;QR=873;RO=23;RPL=0;RPP=31.2394;RPPR=52.9542;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:13:13,0:13:481:0:0:0,-3.91339,-43.6267 0/1:12:2,10:2:75:10:396:-32.3739,0,-3.50644 0/1:8:6,2:6:236:2:80:-5.18355,0,-19.2035 0/1:3:2,1:2:81:1:41:-3.19148,0,-6.78264 dDocent_Contig_15046 62 . A G 60.6116 . AB=0.230769;ABP=11.1951;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=65;DPB=65;DPRA=0.75;EPP=9.52472;EPPR=137.642;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.5;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.854839;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=2311;RO=62;RPL=3;RPP=9.52472;RPPR=137.642;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:10,3:10:368:3:122:-7.4591,0,-29.5386 0/0:19:19,0:19:706:0:0:0,-5.71957,-63.8437 0/0:20:20,0:20:804:0:0:0,-6.0206,-72.6775 0/0:13:13,0:13:433:0:0:0,-3.91339,-39.2613 dDocent_Contig_15047 20 . T C 330.173 . AB=0.0588235;ABP=89.2305;AC=0;AF=0;AN=8;AO=3;CIGAR=1X1M1X1M1X3M2X;DP=67;DPB=67;DPRA=0;EPP=9.52472;EPPR=87.6977;GTI=0;LEN=1;MEANALT=4.5;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=120;QR=1526;RO=39;RPL=0;RPP=9.52472;RPPR=87.6977;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:32:21,2,4,4:21:821:2,4,4:79,157,161:-6.95097,-6.77194,-73.6645,-0.363134,-61.355,-66.652,0,-60.996,-54.5854,-66.2931 0|0:19:10,1,5,1:10:394:1,5,1:41,194,40:-12.9207,-12.545,-44.6575,0,-29.0216,-30.9015,-12.6352,-41.663,-29.1113,-44.747 0|0:9:6,0,3,0:6:234:0,3,0:0,114,0:-7.92082,-9.727,-28.9672,0,-19.6232,-18.7201,-9.727,-28.9672,-19.6232,-28.9672 0|0:7:2,0,4,0:2:77:0,4,0:0,160,0:-12.5781,-13.1801,-19.498,0,-6.31217,-5.10805,-13.1801,-19.498,-6.31217,-19.498 dDocent_Contig_15048 34 . A T 134.361 . AB=0.25;ABP=18.2106;AC=3;AF=0.375;AN=8;AO=7;CIGAR=1X;DP=39;DPB=39;DPRA=0.848485;EPP=18.2106;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=285;QR=1293;RO=32;RPL=0;RPP=18.2106;RPPR=72.4974;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:11,0:11:448:0:0:0,-3.31133,-40.676 0/1:8:7,1:7:286:1:41:-1.68633,0,-23.7066 0/1:8:7,1:7:274:1:41:-1.68633,0,-22.6162 0/1:12:7,5:7:285:5:203:-15.0407,0,-22.412 dDocent_Contig_15049 6 . C A 280.245 . AB=0.3125;ABP=17.6677;AC=4;AF=0.5;AN=8;AO=15;CIGAR=1X;DP=48;DPB=48;DPRA=0;EPP=35.5824;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.666667;PAIREDR=0.969697;PAO=0;PQA=0;PQR=0;PRO=0;QA=538;QR=1283;RO=33;RPL=0;RPP=35.5824;RPPR=74.6689;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:4:3,1:3:115:1:37:-2.49371,0,-9.52077 0/1:20:17,3:17:661:3:107:-3.96121,0,-53.8065 0/1:17:11,6:11:429:6:216:-14.6725,0,-33.8481 0/1:7:2,5:2:78:5:178:-14.2604,0,-5.29626 dDocent_Contig_15050 25 . G A 72.3879 . AB=0.178571;ABP=28.1373;AC=2;AF=0.25;AN=8;AO=7;CIGAR=1X;DP=61;DPB=61;DPRA=4.75;EPP=18.2106;EPPR=120.27;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.571429;PAIREDR=0.740741;PAO=0;PQA=0;PQR=0;PRO=0;QA=271;QR=2164;RO=54;RPL=0;RPP=18.2106;RPPR=120.27;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:29:27,2:27:1070:2:68:0,-2.27524,-90.136 0/0:4:4,0:4:160:0:0:0,-1.20412,-14.7834 0/1:15:13,2:13:528:2:81:-3.17028,0,-43.3514 0/1:13:10,3:10:406:3:122:-7.4591,0,-32.987 dDocent_Contig_15051 17 . A C 138.147 . AB=0.4;ABP=4.31318;AC=2;AF=0.25;AN=8;AO=6;CIGAR=1M1I1M1X1M1X3M1X;DP=32;DPB=32.6667;DPRA=0.882353;EPP=16.0391;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.730769;PAO=0;PQA=0;PQR=0;PRO=0;QA=233;QR=1016;RO=26;RPL=0;RPP=16.0391;RPPR=59.4686;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:9:6,3:6:233:3:116:-8.10843,0,-18.6306 0|0:6:6,0:6:240:0:0:0,-1.80618,-21.976 0|0:11:11,0:11:427:0:0:0,-3.31133,-38.7831 0|1:6:3,3:3:116:3:117:-9.1042,0,-9.01122 dDocent_Contig_15053 15 . C T 158.592 . AB=0.333333;ABP=8.07707;AC=2;AF=0.25;AN=8;AO=8;CIGAR=1X;DP=61;DPB=61;DPRA=0.367816;EPP=20.3821;EPPR=115.927;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=51.6538;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=302;QR=2073;RO=52;RPL=0;RPP=20.3821;RPPR=115.927;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:29:29,0:29:1157:0:0:0,-8.72987,-98.9525 0/1:11:5,5:5:204:5:203:-15.2422,0,-15.3328 0/0:11:10,1:10:401:1:25:0,-0.811467,-33.4802 0/1:10:8,2:8:311:2:74:-4.01372,0,-24.5152 dDocent_Contig_15054 106 . N A 56.0468 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=2X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=59;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:2:0,2:0:0:2:59:-5.60359,-0.60206,0 .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. dDocent_Contig_15055 105 . N C 194.05 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=8;CIGAR=1X3I2X2M2D;DP=8;DPB=9.14286;DPRA=0;EPP=20.3821;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=26.875;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=267;QR=0;RO=0;RPL=0;RPP=20.3821;RPPR=0;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:7:0,7:0:0:7:232:-16.2218,-2.10721,0 1|1:1:0,1:0:0:1:35:-2.88077,-0.30103,0 .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. dDocent_Contig_15056 1 . N G 131.295 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=7.37776;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=142;QR=0;RO=0;RPL=0;RPP=11.6962;RPPR=0;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:4:0,4:0:0:4:142:-13.1292,-1.20412,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_15057 57 . A T 1262.8 . AB=0.578947;ABP=7.12467;AC=4;AF=0.5;AN=8;AO=44;CIGAR=1X;DP=76;DPB=76;DPRA=0;EPP=98.5551;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=0.772727;PAIREDR=0.71875;PAO=0;PQA=0;PQR=0;PRO=0;QA=1724;QR=1262;RO=32;RPL=44;RPP=98.5551;RPPR=72.4974;RPR=0;RUN=1;SAF=44;SAP=98.5551;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:9,9:9:363:9:342:-25.7115,0,-27.6157 0/1:26:6,20:6:231:20:776:-62.3176,0,-13.3282 0/1:20:12,8:12:469:8:323:-23.418,0,-36.5318 0/1:12:5,7:5:199:7:283:-22.2308,0,-14.676 dDocent_Contig_15059 6 . C A 89.9295 . AB=0.222222;ABP=21.1059;AC=2;AF=0.25;AN=8;AO=7;CIGAR=1X;DP=67;DPB=67;DPRA=0.637681;EPP=18.2106;EPPR=133.299;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.966667;PAO=0;PQA=0;PQR=0;PRO=0;QA=257;QR=2336;RO=60;RPL=0;RPP=18.2106;RPPR=133.299;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:23:23,0:23:895:0:0:0,-6.92369,-80.8688 0/0:17:16,1:16:622:1:37:0,-1.41968,-52.6222 0/1:22:18,4:18:702:4:148:-7.05931,0,-56.8913 0/1:5:3,2:3:117:2:72:-5.33149,0,-9.40523 dDocent_Contig_15060 95 . A G 1599.52 . AB=0.56;ABP=4.57376;AC=5;AF=0.625;AN=8;AO=57;CIGAR=1X;DP=79;DPB=79;DPRA=0;EPP=126.784;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1981;QR=752;RO=22;RPL=57;RPP=126.784;RPPR=50.7827;RPR=0;RUN=1;SAF=57;SAP=126.784;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:2,16:2:70:16:554:-44.7692,0,-1.22886 1/1:29:0,29:0:0:29:1010:-91.2134,-8.72987,0 0/1:18:12,6:12:409:6:208:-13.6411,0,-31.7194 0/1:14:8,6:8:273:6:209:-14.9366,0,-20.688 dDocent_Contig_15061 7 . A G 600.379 . AB=0.0576923;ABP=179.735;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X3M1X1M;DP=139;DPB=134.833;DPRA=0;EPP=16.0391;EPPR=187.585;GTI=0;LEN=1;MEANALT=3.5;MQM=40;MQMR=60;NS=4;NUMALT=3;ODDS=1.38778e-17;PAIRED=0.833333;PAIREDR=0.788235;PAO=0;PQA=0;PQR=0;PRO=0;QA=201;QR=3289;RO=85;RPL=0;RPP=16.0391;RPPR=187.585;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=85;SRP=187.585;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:29:15,5,1,8:15:586:5,1,8:169,41,136:-8.78827,0,-46.8075,-9.93818,-44.9567,-57.9073,-5.7226,-40.7006,-50.5796,-51.5246 0|0:75:58,1,8,7:58:2229:1,8,7:32,323,195:-9.21864,-24.3723,-207.093,0,-180.784,-180.682,-12.801,-193.482,-169.179,-193.681 0|0:29:11,0,14,4:11:434:0,14,4:0,560,68:-43.0004,-46.3117,-82.042,0,-35.8967,-31.6822,-42.5214,-78.2296,-32.1165,-77.0255 0|0:6:1,0,2,3:1:40:0,2,3:0,80,51:-6.38821,-6.68924,-10.0103,0,-3.35989,-2.75783,-3.95875,-7.25391,-0.668431,-6.35082 dDocent_Contig_15062 6 . C A 292.044 . AB=0.48;ABP=3.09716;AC=2;AF=0.25;AN=8;AO=12;CIGAR=1X;DP=42;DPB=42;DPRA=1.47059;EPP=29.068;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=438;QR=1170;RO=30;RPL=0;RPP=29.068;RPPR=68.1545;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:5,6:5:195:6:220:-16.8441,0,-14.6129 0/0:11:11,0:11:429:0:0:0,-3.31133,-38.9656 0/1:14:8,6:8:312:6:218:-15.7582,0,-24.2305 0/0:6:6,0:6:234:0:0:0,-1.80618,-21.4311 dDocent_Contig_15063 31 . A T 550.688 . AB=0.320513;ABP=24.8364;AC=3;AF=0.375;AN=8;AO=25;CIGAR=1X;DP=81;DPB=81;DPRA=8.66667;EPP=57.2971;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=921;QR=2041;RO=56;RPL=0;RPP=57.2971;RPPR=124.613;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:49:39,10:39:1399:10:362:-18.1691,0,-111.434 0/1:14:11,3:11:415:3:115:-6.51047,0,-33.4865 0/1:15:3,12:3:113:12:444:-35.787,0,-6.02385 0/0:3:3,0:3:114:0:0:0,-0.90309,-10.6322 dDocent_Contig_15065 36 . T C 159.262 . AB=0.5;ABP=3.0103;AC=2;AF=0.25;AN=8;AO=6;CIGAR=1X;DP=49;DPB=49;DPRA=0.324324;EPP=16.0391;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=246;QR=1709;RO=43;RPL=0;RPP=16.0391;RPPR=96.3836;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:18:18,0:18:726:0:0:0,-5.41854,-65.6643 0/1:9:4,5:4:161:5:205:-16.1257,0,-12.1662 0/0:19:19,0:19:741:0:0:0,-5.71957,-67.0044 0/1:3:2,1:2:81:1:41:-3.19148,0,-6.78264 dDocent_Contig_15066 17 . T C 207.755 . AB=0.294118;ABP=15.5282;AC=3;AF=0.375;AN=8;AO=10;CIGAR=1X;DP=47;DPB=47;DPRA=0.871795;EPP=24.725;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=392;QR=1488;RO=37;RPL=0;RPP=24.725;RPPR=83.3548;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:13:13,0:13:524:0:0:0,-3.91339,-47.5074 0/1:24:19,5:19:768:5:197:-10.8793,0,-62.2161 0/1:8:4,4:4:155:4:159:-12.2837,0,-11.9135 0/1:2:1,1:1:41:1:36:-2.99621,0,-3.49251 dDocent_Contig_15067 17 . G A 505.728 . AB=0.114286;ABP=48.239;AC=0;AF=0;AN=8;AO=4;CIGAR=1M1X4M;DP=77;DPB=62.3333;DPRA=0;EPP=11.6962;EPPR=111.584;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.78;PAO=0;PQA=0;PQR=0;PRO=0;QA=154;QR=1862;RO=50;RPL=0;RPP=11.6962;RPPR=111.584;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:26:15,11,0:15:565:11,0:437,0:-31.8578,0,-43.3637,-36.3733,-46.675,-82.6601 0|0:16:13,3,0:13:483:3,0:116,0:-6.00106,0,-38.9949,-9.91445,-39.898,-49.4289 0|0:25:16,6,2:16:602:6,2:241,81:-15.1123,0,-47.5866,-13.2387,-42.7088,-61.9768 0|0:10:6,2,2:6:212:2,2:82,73:-4.98436,0,-16.6533,-0.850492,-11.2901,-17.4702 dDocent_Contig_15068 8 . T A 308.665 . AB=0.311111;ABP=16.956;AC=3;AF=0.375;AN=8;AO=14;CIGAR=1X;DP=55;DPB=55;DPRA=1.5;EPP=33.4109;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.122;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.780488;PAO=0;PQA=0;PQR=0;PRO=0;QA=538;QR=1580;RO=41;RPL=0;RPP=33.4109;RPPR=92.0407;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:10:10,0:10:386:0:0:0,-3.0103,-35.097 0/1:7:6,1:6:233:1:39:-1.78935,0,-19.1965 0/1:23:16,7:16:612:7:267:-17.4688,0,-48.4945 0/1:15:9,6:9:349:6:232:-16.7335,0,-27.2459 dDocent_Contig_15071 73 . T A 449.911 . AB=0.395349;ABP=7.10075;AC=4;AF=0.5;AN=8;AO=19;CIGAR=1X;DP=54;DPB=54;DPRA=1.66667;EPP=44.2683;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=670;QR=1210;RO=35;RPL=19;RPP=44.2683;RPPR=79.0118;RPR=0;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0 0/1:17:4,13:4:135:13:460:-36.6183,0,-7.36547 0/1:26:22,4:22:759:4:138:-4.9336,0,-60.7983 0/0:9:9,0:9:316:0:0:0,-2.70927,-28.7791 dDocent_Contig_15072 27 . T A 787.686 . AB=0.403226;ABP=8.05372;AC=5;AF=0.625;AN=8;AO=28;CIGAR=1X;DP=65;DPB=65;DPRA=0;EPP=63.8115;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1126;QR=1479;RO=37;RPL=0;RPP=63.8115;RPPR=83.3548;RPR=28;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:8,4:8:323:4:161:-11.2625,0,-25.8262 0/1:22:11,11:11:445:11:447:-33.9628,0,-33.783 0/1:28:18,10:18:711:10:396:-27.5685,0,-55.8817 1/1:3:0,3:0:0:3:122:-11.3725,-0.90309,0 dDocent_Contig_15074 179 . C A 40.1406 . AB=0.2;ABP=14.7363;AC=2;AF=0.25;AN=8;AO=3;CIGAR=1X;DP=22;DPB=22;DPRA=2.14286;EPP=9.52472;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=123;QR=759;RO=19;RPL=3;RPP=9.52472;RPPR=44.2683;RPR=0;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=44.2683;SRR=19;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:7,2:7:284:2:82:-5.07041,0,-23.2245 0/0:6:6,0:6:241:0:0:0,-1.80618,-22.0652 0/1:6:5,1:5:193:1:41:-2.28839,0,-15.9325 0/0:1:1,0:1:41:0:0:0,-0.30103,-4.09457 dDocent_Contig_15075 118 . G C 377.945 . AB=0.461538;ABP=3.34437;AC=5;AF=0.625;AN=8;AO=15;CIGAR=1X1M;DP=41;DPB=41;DPRA=0.805556;EPP=35.5824;EPPR=34.9902;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=57.7273;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.909091;PAO=0;PQA=0;PQR=0;PRO=0;QA=487;QR=681;RO=22;RPL=0;RPP=35.5824;RPPR=50.7827;RPR=15;RUN=1;SAF=0;SAP=35.5824;SAR=15;SRF=2;SRP=34.9902;SRR=20;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:3:0,0,3:0:0:0,3:0,90:-8.3974,-8.3974,-8.3974,-0.90309,-0.90309,0 0|0:12:12,0,0:12:386:0,0:0,0:0,-3.61236,-35.0522,-3.61236,-35.0522,-35.0522 0|1:19:10,0,9:10:295:0,9:0,294:-21.0589,-24.0692,-47.3191,0,-23.5601,-20.8509 1|1:7:0,4,3:0:0:4,3:139,103:-11.6873,-8.70688,-7.50276,-3.22787,0,-2.32478 dDocent_Contig_15076 44 . A T 76.5864 . AB=0.428571;ABP=3.32051;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=42;DPB=42;DPRA=0.6;EPP=9.52472;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=123;QR=1582;RO=39;RPL=0;RPP=9.52472;RPPR=87.6977;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:12:12,0:12:482:0:0:0,-3.61236,-43.7309 0/0:18:18,0:18:733:0:0:0,-5.41854,-66.2937 0/1:7:4,3:4:163:3:123:-9.35758,0,-12.9512 0/0:5:5,0:5:204:0:0:0,-1.50515,-18.744 dDocent_Contig_15077 11 . T G 1557.91 . AB=0.357724;ABP=24.6368;AC=2;AF=0.25;AN=8;AO=44;CIGAR=1X2M2X1M1X;DP=123;DPB=123;DPRA=0;EPP=98.5551;EPPR=83.3548;GTI=0;LEN=1;MEANALT=3;MQM=57.1591;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.636364;PAIREDR=0.594595;PAO=0;PQA=0;PQR=0;PRO=0;QA=1686;QR=1467;RO=37;RPL=0;RPP=98.5551;RPPR=83.3548;RPR=44;RUN=1;SAF=44;SAP=98.5551;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:22:6,3,12:6:240:3,12:108,487:-38.3865,-31.4012,-50.267,0,-11.0017,-16.1776 0|1:40:12,20,8:12:477:20,8:769,317:-59.382,0,-33.2535,-36.8982,-13.1819,-73.7684 0|0:43:14,12,13:14:559:12,13:465,521:-38.7165,-4.98864,-47.4193,0,-8.10576,-42.1352 0|1:18:5,9,4:5:191:9,4:344,163:-26.7033,0,-12.9468,-14.7535,-2.19748,-29.2194 dDocent_Contig_15078 69 . C T 90.4693 . AB=0.162162;ABP=39.6906;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=92;DPB=92;DPRA=1.42105;EPP=18.2106;EPPR=187.585;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=273;QR=3393;RO=85;RPL=7;RPP=18.2106;RPPR=187.585;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=85;SRP=187.585;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:34:34,0:34:1353:0:0:0,-10.235,-122.036 0/1:37:31,6:31:1235:6:239:-10.7458,0,-100.288 0/0:17:16,1:16:645:1:34:0,-1.7186,-54.9855 0/0:4:4,0:4:160:0:0:0,-1.20412,-14.7838 dDocent_Contig_15079 71 . G T 131.423 . AB=0.304348;ABP=10.6577;AC=2;AF=0.25;AN=8;AO=7;CIGAR=1X;DP=51;DPB=51;DPRA=0.821429;EPP=18.2106;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=254;QR=1572;RO=44;RPL=7;RPP=18.2106;RPPR=98.5551;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:3:3,0:3:111:0:0:0,-0.90309,-10.3539 0/1:17:11,6:11:385:6:217:-14.7638,0,-29.866 0/0:25:25,0:25:895:0:0:0,-7.52575,-80.8664 0/1:6:5,1:5:181:1:37:-1.89165,0,-14.837 dDocent_Contig_15080 11 . T G 706.984 . AB=0.571429;ABP=4.87156;AC=2;AF=0.25;AN=8;AO=24;CIGAR=1X;DP=66;DPB=66;DPRA=1.75;EPP=55.1256;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=0.875;PAIREDR=0.809524;PAO=0;PQA=0;PQR=0;PRO=0;QA=956;QR=1693;RO=42;RPL=0;RPP=55.1256;RPPR=94.2121;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:9,21:9:357:21:834:-66.3361,0,-23.4589 0/0:19:19,0:19:775:0:0:0,-5.71957,-70.0683 0/1:12:9,3:9:363:3:122:-7.76013,0,-29.4219 0/0:5:5,0:5:198:0:0:0,-1.50515,-18.197 dDocent_Contig_15082 76 . T G 514.758 . AB=0.3125;ABP=22.5536;AC=5;AF=0.625;AN=8;AO=21;CIGAR=1X16M;DP=65;DPB=65;DPRA=0;EPP=11.386;EPPR=3.0103;GTI=0;LEN=1;MEANALT=1.75;MQM=60;MQMR=60;NS=4;NUMALT=4;ODDS=0;PAIRED=0.47619;PAIREDR=0.789474;PAO=0;PQA=0;PQR=0;PRO=0;QA=817;QR=1403;RO=38;RPL=21;RPP=48.6112;RPPR=85.5263;RPR=0;RUN=1;SAF=15;SAP=11.386;SAR=6;SRF=19;SRP=3.0103;SRR=19;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:19:8,2,2,0,7:8:276:2,2,0,7:79,80,0,275:-20.294,-16.1906,-38.0138,-21.0136,-36.9073,-42.8091,-22.7022,-38.6159,-43.4111,-45.1223,0,-15.9592,-20.7763,-22.4752,-20.368 0|1:20:15,0,0,2,3:15:560:0,0,2,3:0,0,72,117:-5.13804,-9.65349,-55.5079,-9.65349,-55.5079,-55.5079,-4.3412,-50.1763,-50.1763,-49.5742,0,-45.887,-45.887,-40.5559,-44.9839 0|1:25:15,0,0,0,10:15:567:0,0,0,10:0,0,0,389:-27.8411,-32.3566,-78.8238,-32.3566,-78.8238,-78.8238,-32.3566,-78.8238,-78.8238,-78.8238,0,-46.8515,-46.8515,-46.8515,-43.8412 1|1:1:0,0,0,0,1:0:0:0,0,0,1:0,0,0,36:-3.59827,-3.59827,-3.59827,-3.59827,-3.59827,-3.59827,-3.59827,-3.59827,-3.59827,-3.59827,-0.30103,-0.30103,-0.30103,-0.30103,0 dDocent_Contig_15084 7 . A G 716.822 . AB=0.170732;ABP=41.6201;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X1M1X2M;DP=68;DPB=68;DPRA=0;EPP=10.7656;EPPR=63.8115;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=0.285714;PAIREDR=0.964286;PAO=0;PQA=0;PQR=0;PRO=0;QA=236;QR=1077;RO=28;RPL=0;RPP=18.2106;RPPR=63.8115;RPR=7;RUN=1;SAF=6;SAP=10.7656;SAR=1;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:18:8,4,0,6:8:308:4,0,6:131,0,228:-16.3216,-8.17212,-32.26,-18.7298,-33.4642,-44.0306,0,-14.7679,-25.3275,-23.5213 0|0:20:5,0,5,10:5:194:0,5,10:0,163,378:-29.5142,-31.0193,-46.9662,-17.8773,-33.8206,-32.3155,0,-15.9709,-2.8425,-12.9606 0|1:9:6,2,0,1:6:227:2,0,1:74,0,39:-4.23417,0,-17.9965,-6.04035,-18.5986,-24.65,-2.82784,-15.391,-21.4426,-21.1415 0|0:21:9,0,2,10:9:348:0,2,10:0,73,386:-29.0092,-31.7185,-60.3051,-25.7581,-54.3432,-53.7412,0,-28.6025,-22.6425,-25.5922 dDocent_Contig_15085 21 . A G 52.5071 . 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T G 49.5177 . AB=0.118644;ABP=77.5396;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=120;DPB=120;DPRA=2.90164;EPP=18.2106;EPPR=248.387;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=264;QR=3818;RO=113;RPL=0;RPP=18.2106;RPPR=248.387;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=113;SRP=248.387;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:59:52,7:52:1829:7:264:-6.34957,0,-147.117 0/0:53:53,0:53:1735:0:0:0,-15.9546,-156.403 0/0:4:4,0:4:141:0:0:0,-1.20412,-13.0356 0/0:4:4,0:4:113:0:0:0,-1.20412,-10.4477 dDocent_Contig_15091 33 . G A 1607.65 . AB=0.568421;ABP=6.87324;AC=4;AF=0.5;AN=8;AO=54;CIGAR=1X;DP=95;DPB=95;DPRA=0;EPP=120.27;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=0.962963;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2158;QR=1591;RO=41;RPL=0;RPP=120.27;RPPR=92.0407;RPR=54;RUN=1;SAF=54;SAP=120.27;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:40:17,23:17:659:23:902:-69.4461,0,-47.5888 0/1:23:2,21:2:82:21:849:-69.7976,0,-0.855988 0/1:19:11,8:11:417:8:325:-23.9001,0,-32.1548 0/1:13:11,2:11:433:2:82:-3.86629,0,-35.4047 dDocent_Contig_15093 37 . A T 321.425 . AB=0.363636;ABP=8.34028;AC=2;AF=0.25;AN=8;AO=13;CIGAR=1X4M;DP=52;DPB=52;DPRA=5.44444;EPP=31.2394;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.944444;PAO=0;PQA=0;PQR=0;PRO=0;QA=531;QR=1409;RO=36;RPL=0;RPP=31.2394;RPPR=81.1833;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:14:4,0,10:4:158:0,10:0,409:-32.9562,-34.1603,-47.1581,0,-13.3964,-10.3861 0|0:16:15,0,1:15:588:0,1:0,41:0,-4.51545,-52.8507,-0.721913,-49.4655,-49.1645 0|1:19:14,2,2:14:553:2,2:80,81:-2.47468,-0.0922955,-45.0042,0,-38.9255,-44.9147 0|0:3:3,0,0:3:110:0,0:0,0:0,-0.90309,-10.2589,-0.90309,-10.2589,-10.2589 dDocent_Contig_15094 11 . G A 2431.46 . AB=0.72449;ABP=45.908;AC=5;AF=0.625;AN=8;AO=76;CIGAR=1X2M;DP=103;DPB=103;DPRA=0;EPP=168.042;EPPR=44.2683;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3061;QR=755;RO=19;RPL=0;RPP=168.042;RPPR=44.2683;RPR=76;RUN=1;SAF=76;SAP=168.042;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:38:5,1,2,30:5:201:1,2,30:34,76,1212:-98.4474,-97.1964,-113.459,-93.7213,-107.529,-109.683,0,-13.8349,-10.3563,-7.55504 0|1:41:7,0,0,33:7:276:0,0,33:0,0,1323:-106.92,-109.028,-131.735,-109.028,-131.735,-131.735,0,-22.7292,-22.7292,-12.7952 0|1:19:7,4,0,8:7:278:4,0,8:160,0,322:-24.4323,-13.3602,-35.0404,-26.5395,-36.2445,-49.4247,0,-9.70384,-22.885,-20.4768 1|1:5:0,0,0,5:0:0:0,0,5:0,0,204:-18.744,-18.744,-18.744,-18.744,-18.744,-18.744,-1.50515,-1.50515,-1.50515,0 dDocent_Contig_15095 30 . T C 1225.03 . AB=0.312102;ABP=51.1561;AC=4;AF=0.5;AN=8;AO=49;CIGAR=1X;DP=157;DPB=157;DPRA=0;EPP=84.9501;EPPR=204.073;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=0.77551;PAIREDR=0.657407;PAO=0;PQA=0;PQR=0;PRO=0;QA=1953;QR=4285;RO=108;RPL=0;RPP=109.412;RPPR=237.529;RPR=49;RUN=1;SAF=46;SAP=84.9501;SAR=3;SRF=104;SRP=204.073;SRR=4;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:70:58,12:58:2319:12:473:-21.8415,0,-187.795 0/1:46:19,27:19:748:27:1081:-83.7326,0,-53.7896 0/1:23:19,4:19:754:4:163:-8.13474,0,-61.2579 0/1:18:12,6:12:464:6:236:-16.1921,0,-36.6857 dDocent_Contig_15096 11 . G C 57.8375 . AB=0.230769;ABP=11.1951;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=66;DPB=66;DPRA=0.735849;EPP=9.52472;EPPR=139.813;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.904762;PAO=0;PQA=0;PQR=0;PRO=0;QA=119;QR=2506;RO=63;RPL=0;RPP=9.52472;RPPR=139.813;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=63;SRP=139.813;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:10,3:10:400:3:119:-7.18162,0,-32.4456 0/0:12:12,0:12:475:0:0:0,-3.61236,-43.0973 0/0:37:37,0:37:1477:0:0:0,-11.1381,-133.179 0/0:4:4,0:4:154:0:0:0,-1.20412,-14.2322 dDocent_Contig_15097 42 . G A 145.059 . AB=0.233333;ABP=21.5402;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X;DP=97;DPB=97;DPRA=2.23333;EPP=22.5536;EPPR=194.1;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=352;QR=3440;RO=88;RPL=0;RPP=22.5536;RPPR=194.1;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=88;SRP=194.1;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:23,7:23:876:7:273:-15.9038,0,-70.1054 0/0:37:35,2:35:1385:2:79:0,-3.64087,-117.413 0/0:11:11,0:11:447:0:0:0,-3.31133,-40.5861 0/0:19:19,0:19:732:0:0:0,-5.71957,-66.1972 dDocent_Contig_15099 9 . T A 262.963 . AB=0.236111;ABP=46.5604;AC=4;AF=0.5;AN=8;AO=17;CIGAR=1X;DP=72;DPB=72;DPRA=0;EPP=39.9253;EPPR=120.27;GTI=0;LEN=1;MEANALT=1.25;MQM=41.2941;MQMR=58.4444;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=646;QR=2073;RO=54;RPL=0;RPP=39.9253;RPPR=120.27;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:20,5:20:765:5:195:-9.73939,0,-57.8098 0/1:15:11,4:11:429:4:156:-9.26181,0,-34.4502 0/1:19:13,6:13:496:6:233:-12.6814,0,-39.2679 0/1:12:10,2:10:383:2:62:-1.03543,0,-31.213 dDocent_Contig_15101 69 . T C 52.9802 . AB=0.230769;ABP=11.1951;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=91;DPB=91;DPRA=0.5;EPP=9.52472;EPPR=12.8806;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.9432;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.738636;PAO=0;PQA=0;PQR=0;PRO=0;QA=117;QR=3413;RO=88;RPL=0;RPP=9.52472;RPPR=12.8806;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=88;SRP=194.1;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:38:38,0:38:1451:0:0:0,-11.4391,-130.859 0/0:16:16,0:16:618:0:0:0,-4.81648,-55.9516 0/0:24:24,0:24:946:0:0:0,-7.22472,-85.4464 0/1:13:10,3:10:398:3:117:-6.99699,0,-32.2646 dDocent_Contig_15102 143 . C T 388.298 . AB=0.481481;ABP=3.09072;AC=4;AF=0.666667;AN=6;AO=16;CIGAR=1X;DP=30;DPB=30;DPRA=0;EPP=37.7539;EPPR=33.4109;GTI=0;LEN=1;MEANALT=1;MQM=40;MQMR=47;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=591;QR=547;RO=14;RPL=0;RPP=37.7539;RPPR=33.4109;RPR=16;RUN=1;SAF=0;SAP=37.7539;SAR=16;SRF=0;SRP=33.4109;SRR=14;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:6,7:6:237:7:253:-17.7036,0,-17.3994 ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:123:-10.4891,-0.90309,0 0/1:14:8,6:8:310:6:215:-14.1597,0,-23.5655 dDocent_Contig_15103 10 . A G 550.562 . AB=0.297297;ABP=29.4201;AC=3;AF=0.375;AN=8;AO=22;CIGAR=1X3M;DP=77;DPB=77;DPRA=8.22222;EPP=50.7827;EPPR=100.727;GTI=0;LEN=1;MEANALT=2.66667;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.955556;PAO=0;PQA=0;PQR=0;PRO=0;QA=885;QR=1782;RO=45;RPL=0;RPP=50.7827;RPPR=100.727;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:31:20,1,9:20:799:1,9:41,363:-24.0228,-26.6559,-92.1846,0,-62.5581,-63.234 0|1:18:9,3,5:9:351:3,5:120,202:-13.9879,-6.79663,-34.7668,0,-19.0022,-27.3911 0|1:25:13,4,8:13:515:4,8:162,320:-22.4432,-12.9966,-54.1797,0,-29.0225,-39.9746 0|0:3:3,0,0:3:117:0,0:0,0:0,-0.90309,-10.9099,-0.90309,-10.9099,-10.9099 dDocent_Contig_15104 93 . C T 329.486 . AB=0.421053;ABP=5.06748;AC=3;AF=0.375;AN=8;AO=18;CIGAR=1X;DP=60;DPB=60;DPRA=0;EPP=42.0968;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=602;QR=1432;RO=42;RPL=18;RPP=42.0968;RPPR=94.2121;RPR=0;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:17,14:17:578:14:470:-33.2858,0,-43.0097 0/0:22:20,2:20:679:2:61:0,-0.829429,-55.635 0/1:3:2,1:2:70:1:36:-2.69518,0,-5.74431 0/1:4:3,1:3:105:1:35:-2.29451,0,-8.59204 dDocent_Contig_15105 31 . G A 130.636 . AB=0.3;ABP=9.95901;AC=2;AF=0.25;AN=8;AO=6;CIGAR=1X;DP=29;DPB=29;DPRA=2.22222;EPP=16.0391;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=241;QR=922;RO=23;RPL=0;RPP=16.0391;RPPR=52.9542;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:13,5:13:526:5:200:-12.9612,0,-42.2688 0/0:4:4,0:4:158:0:0:0,-1.20412,-14.5998 0/1:2:1,1:1:40:1:41:-3.49251,0,-3.39362 0/0:5:5,0:5:198:0:0:0,-1.50515,-18.1965 dDocent_Contig_15106 109 . A T 39.3381 . AB=0.5;ABP=3.0103;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X;DP=24;DPB=24;DPRA=0.6;EPP=7.35324;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=72;QR=727;RO=22;RPL=0;RPP=7.35324;RPPR=50.7827;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=50.7827;SRR=22;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:7:7,0:7:229:0:0:0,-2.10721,-20.9308 0/0:9:9,0:9:290:0:0:0,-2.70927,-26.4133 0/1:4:2,2:2:69:2:72:-5.6326,0,-5.34854 0/0:4:4,0:4:139:0:0:0,-1.20412,-12.8527 dDocent_Contig_15107 98 . N A 96.1015 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=103;QR=0;RO=0;RPL=3;RPP=9.52472;RPPR=0;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:103:-9.6096,-0.90309,0 ./.:.:.:.:.:.:.:. dDocent_Contig_15108 17 . G T 172.379 . AB=0.545455;ABP=3.20771;AC=1;AF=0.25;AN=4;AO=6;CIGAR=1X;DP=17;DPB=17;DPRA=1.83333;EPP=16.0391;EPPR=26.8965;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=243;QR=438;RO=11;RPL=0;RPP=16.0391;RPPR=26.8965;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=11;SRP=26.8965;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 0/1:11:5,6:5:197:6:243:-18.9368,0,-14.7947 0/0:6:6,0:6:241:0:0:0,-1.80618,-22.0669 ./.:.:.:.:.:.:.:. dDocent_Contig_15109 7 . A C 122.064 . AB=0.230769;ABP=19.3799;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X1M1X;DP=62;DPB=62;DPRA=2.16667;EPP=16.0391;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=234;QR=2131;RO=56;RPL=0;RPP=16.0391;RPPR=124.613;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:26:20,6:20:762:6:234:-13.6043,0,-61.0809 0|0:8:8,0:8:302:0:0:0,-2.40824,-27.5369 0|0:9:9,0:9:335:0:0:0,-2.70927,-30.5008 0|0:19:19,0:19:732:0:0:0,-5.71957,-66.2116 dDocent_Contig_15110 123 . G A 187.407 . AB=0.333333;ABP=10.2485;AC=3;AF=0.375;AN=8;AO=10;CIGAR=1X;DP=33;DPB=33;DPRA=3.33333;EPP=10.8276;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=353;QR=795;RO=23;RPL=0;RPP=24.725;RPPR=52.9542;RPR=10;RUN=1;SAF=8;SAP=10.8276;SAR=2;SRF=0;SRP=52.9542;SRR=23;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:11,3:11:379:3:107:-5.76766,0,-30.2278 0/1:6:1,5:1:35:5:178:-14.5623,0,-1.69245 0/1:10:8,2:8:279:2:68:-3.44712,0,-22.4387 0/0:3:3,0:3:102:0:0:0,-0.90309,-9.5168 dDocent_Contig_15111 77 . T A 82.163 . AB=0.263158;ABP=12.2676;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=95;DPB=95;DPRA=0.696429;EPP=16.0391;EPPR=179.29;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=0.842697;PAO=0;PQA=0;PQR=0;PRO=0;QA=204;QR=3060;RO=89;RPL=6;RPP=16.0391;RPPR=196.271;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=87;SRP=179.29;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:22:22,0:22:763:0:0:0,-6.62266,-68.9913 0/0:34:34,0:34:1164:0:0:0,-10.235,-105.063 0/1:19:14,5:14:489:5:170:-9.91527,0,-38.621 0/0:20:19,1:19:644:1:34:0,-2.62169,-54.8796 dDocent_Contig_15112 79 . A T 82.6171 . AB=0.2;ABP=30.3709;AC=2;AF=0.25;AN=8;AO=9;CIGAR=1X;DP=101;DPB=101;DPRA=1.06944;EPP=22.5536;EPPR=200.614;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=309;QR=3074;RO=91;RPL=9;RPP=22.5536;RPPR=200.614;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=91;SRP=200.614;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:42:40,2:40:1368:2:71:0,-5.9012,-116.675 0/0:24:24,0:24:820:0:0:0,-7.22472,-74.1161 0/1:23:19,3:19:615:3:102:-2.67397,0,-48.8451 0/1:12:8,4:8:271:4:136:-8.96326,0,-21.1084 dDocent_Contig_15113 22 . A G 1003.52 . AB=0.420455;ABP=7.84676;AC=2;AF=0.25;AN=8;AO=37;CIGAR=1X;DP=149;DPB=149;DPRA=1.44262;EPP=83.3548;EPPR=246.215;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1440;QR=4430;RO=112;RPL=0;RPP=83.3548;RPPR=246.215;RPR=37;RUN=1;SAF=37;SAP=83.3548;SAR=0;SRF=112;SRP=246.215;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:13:13,0:13:509:0:0:0,-3.91339,-46.156 0/0:48:48,0:48:1909:0:0:0,-14.4494,-172.018 0/1:67:35,32:35:1383:32:1240:-91.6918,0,-104.563 0/1:21:16,5:16:629:5:200:-12.0579,0,-50.6206 dDocent_Contig_15114 90 . T G 84.514 . AB=0.238095;ABP=28.0339;AC=4;AF=0.5;AN=8;AO=10;CIGAR=1X;DP=42;DPB=42;DPRA=0;EPP=24.725;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=302;QR=1195;RO=32;RPL=10;RPP=24.725;RPPR=72.4974;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:20,4:20:734:4:113:-3.22354,0,-59.1511 0/1:8:5,3:5:194:3:109:-7.75919,0,-15.4246 0/1:8:6,2:6:228:2:47:-2.05647,0,-18.4757 0/1:2:1,1:1:39:1:33:-2.69707,0,-3.2945 dDocent_Contig_15115 41 . C A 71.5743 . AB=0.150943;ABP=59.0998;AC=3;AF=0.375;AN=8;AO=8;CIGAR=1X;DP=70;DPB=70;DPRA=1.03922;EPP=20.3821;EPPR=135.47;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.875;PAIREDR=0.918033;PAO=0;PQA=0;PQR=0;PRO=0;QA=304;QR=2441;RO=61;RPL=0;RPP=20.3821;RPPR=135.47;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=61;SRP=135.47;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:4:3,1:3:120:1:40:-2.79156,0,-9.98319 0/0:17:16,0:16:643:0:0:0,-4.81648,-58.0937 0/1:19:16,3:16:638:3:120:-5.46774,0,-52.0328 0/1:30:26,4:26:1040:4:144:-4.27828,0,-84.8598 dDocent_Contig_15116 96 . C G 345.696 . AB=0.181818;ABP=12.6832;AC=3;AF=0.375;AN=8;AO=15;CIGAR=1X;DP=56;DPB=56;DPRA=2.33333;EPP=35.5824;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=499;QR=1422;RO=41;RPL=15;RPP=35.5824;RPPR=92.0407;RPR=0;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:9,2:9:313:2:70:-3.33607,0,-25.1957 1/1:11:0,11:0:0:11:359:-32.6264,-3.31133,0 0/0:27:25,2:25:866:2:70:0,-1.48041,-71.61 0/0:7:7,0:7:243:0:0:0,-2.10721,-22.2088 dDocent_Contig_15117 7 . A G 370.728 . AB=0.517241;ABP=3.08518;AC=1;AF=0.125;AN=8;AO=15;CIGAR=1X;DP=97;DPB=97;DPRA=1.27941;EPP=35.5824;EPPR=178.9;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.962963;PAO=0;PQA=0;PQR=0;PRO=0;QA=519;QR=3053;RO=81;RPL=0;RPP=35.5824;RPPR=178.9;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=81;SRP=178.9;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:13,15:13:501:15:519:-38.4707,0,-36.8787 0/0:39:39,0:39:1474:0:0:0,-11.7402,-132.936 0/0:13:13,0:13:484:0:0:0,-3.91339,-43.9015 0/0:16:16,0:16:594:0:0:0,-4.81648,-53.7857 dDocent_Contig_15118 174 . A G 1132.76 . AB=0.5;ABP=3.0103;AC=5;AF=0.625;AN=8;AO=30;CIGAR=1X1M;DP=57;DPB=57;DPRA=3.07143;EPP=68.1545;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1177;QR=834;RO=22;RPL=30;RPP=68.1545;RPPR=50.7827;RPR=0;RUN=1;SAF=0;SAP=68.1545;SAR=30;SRF=0;SRP=50.7827;SRR=22;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:5:0,5,0:0:0:5,0:173,0:-15.9043,-1.50515,0,-15.9043,-1.50515,-15.9043 1|1:17:0,0,17:0:0:0,17:0,654:-59.1804,-59.1804,-59.1804,-5.11751,-5.11751,0 0|0:9:9,0,0:9:363:0,0:0,0:0,-2.70927,-33.0347,-2.70927,-33.0347,-33.0347 0|1:26:13,0,13:13:471:0,13:0,523:-39.5889,-43.5023,-81.9183,0,-38.7979,-34.8845 dDocent_Contig_15122 9 . T C 243.257 . AB=0.6;ABP=4.31318;AC=2;AF=0.25;AN=8;AO=9;CIGAR=1X;DP=33;DPB=33;DPRA=0.833333;EPP=22.5536;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=349;QR=923;RO=24;RPL=0;RPP=22.5536;RPPR=55.1256;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:6:6,0:6:232:0:0:0,-1.80618,-21.2489 0/1:9:5,4:5:195:4:156:-11.708,0,-15.2149 0/1:6:1,5:1:39:5:193:-15.9353,0,-2.09038 0/0:12:12,0:12:457:0:0:0,-3.61236,-41.4787 dDocent_Contig_15123 21 . A G 230.652 . AB=0.270833;ABP=24.906;AC=4;AF=0.5;AN=8;AO=13;CIGAR=1X;DP=48;DPB=48;DPRA=0;EPP=4.51363;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=0.307692;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=482;QR=1404;RO=35;RPL=0;RPP=31.2394;RPPR=79.0118;RPR=13;RUN=1;SAF=8;SAP=4.51363;SAR=5;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:16,3:16:634:3:110:-4.54124,0,-51.6755 0/1:11:7,4:7:284:4:144:-9.99909,0,-22.6225 0/1:13:8,5:8:327:5:193:-13.8269,0,-25.8867 0/1:5:4,1:4:159:1:35:-1.99348,0,-13.1868 dDocent_Contig_15124 12 . C T 192.924 . AB=0.466667;ABP=3.15506;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=40;DPB=40;DPRA=1.8;EPP=18.2106;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.857143;PAIREDR=0.757576;PAO=0;PQA=0;PQR=0;PRO=0;QA=276;QR=1319;RO=33;RPL=0;RPP=18.2106;RPPR=74.6689;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:8,7:8:325:7:276:-20.6902,0,-25.1042 0/0:15:15,0:15:591:0:0:0,-4.51545,-53.522 0/0:3:3,0:3:122:0:0:0,-0.90309,-11.3725 0/0:7:7,0:7:281:0:0:0,-2.10721,-25.662 dDocent_Contig_15125 154 . A G 39.7378 . AB=0.25;ABP=7.35324;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X;DP=20;DPB=20;DPRA=2;EPP=7.35324;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=715;RO=18;RPL=0;RPP=7.35324;RPPR=42.0968;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=42.0968;SRR=18;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:8:6,2:6:235:2:82:-5.37144,0,-19.1099 0/0:5:5,0:5:199:0:0:0,-1.50515,-18.2867 0/0:3:3,0:3:121:0:0:0,-0.90309,-11.2802 0/0:4:4,0:4:160:0:0:0,-1.20412,-14.7829 dDocent_Contig_15126 136 . C A 35.0075 . AB=0.214286;ABP=12.937;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=21;DPB=21;DPRA=4;EPP=9.52472;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=99;QR=605;RO=18;RPL=0;RPP=9.52472;RPPR=42.0968;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=42.0968;SRR=18;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:11,3:11:374:3:99:-5.0227,0,-29.7733 0/0:6:6,0:6:196:0:0:0,-1.80618,-17.9613 ./.:.:.:.:.:.:.:. 0/0:1:1,0:1:35:0:0:0,-0.30103,-3.49863 dDocent_Contig_15127 44 . G A 910.549 . AB=0.440476;ABP=5.59539;AC=3;AF=0.375;AN=8;AO=37;CIGAR=1M1X1M1X1M1X;DP=127;DPB=126.167;DPRA=0.651163;EPP=83.3548;EPPR=185.414;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1329;QR=3297;RO=84;RPL=0;RPP=83.3548;RPPR=185.414;RPR=37;RUN=1;SAF=37;SAP=83.3548;SAR=0;SRF=84;SRP=185.414;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:68:34,5,29:34:1331:5,29:195,1038:-74.3643,-68.5657,-176.518,0,-93.4124,-100.711 0|0:43:42,0,0:42:1656:0,0:0,0:0,-12.6433,-148.884,-12.6433,-148.884,-148.884 0|1:7:4,0,3:4:155:0,3:0,113:-8.43176,-9.63588,-22.3755,0,-13.1206,-12.2175 0|1:9:4,0,5:4:155:0,5:0,178:-13.6568,-14.8609,-27.6085,0,-13.1209,-11.6157 dDocent_Contig_15128 44 . A G 459.503 . AB=0.327586;ABP=17.986;AC=3;AF=0.375;AN=8;AO=19;CIGAR=1X;DP=62;DPB=62;DPRA=4.83333;EPP=44.2683;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=752;QR=1703;RO=43;RPL=0;RPP=44.2683;RPPR=96.3836;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:24,12:24:939:12:468:-31.6296,0,-73.9714 0/1:17:12,5:12:480:5:202:-13.444,0,-38.4328 0/0:4:4,0:4:161:0:0:0,-1.20412,-14.8749 0/1:5:3,2:3:123:2:82:-6.27453,0,-9.95964 dDocent_Contig_15130 22 . T A 653.847 . AB=0.75;ABP=18.2106;AC=1;AF=0.166667;AN=6;AO=21;CIGAR=1X;DP=50;DPB=50;DPRA=2.54545;EPP=48.6112;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=837;QR=1170;RO=29;RPL=0;RPP=48.6112;RPPR=65.983;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:17:17,0:17:685:0:0:0,-5.11751,-61.98 0/1:28:7,21:7:284:21:837:-67.2086,0,-17.5052 0/0:5:5,0:5:201:0:0:0,-1.50515,-18.4711 ./.:.:.:.:.:.:.:. dDocent_Contig_15131 31 . T C 963.692 . AB=0.157895;ABP=41.6397;AC=2;AF=0.25;AN=8;AO=6;CIGAR=1X2M;DP=63;DPB=63;DPRA=1.52;EPP=16.0391;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=244;QR=1224;RO=31;RPL=0;RPP=16.0391;RPPR=70.3259;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:30:3,26,1:3:118:26,1:1024,41:-83.3163,0,-1.86752,-80.8348,-6.30609,-90.2404 0|0:18:18,0,0:18:713:0,0:0,0:0,-5.41854,-64.4974,-5.41854,-64.4974,-64.4974 0|0:7:7,0,0:7:274:0,0:0,0:0,-2.10721,-25.0249,-2.10721,-25.0249,-25.0249 0|1:8:3,0,5:3:119:0,5:0,203:-16.2448,-17.1479,-26.9403,0,-10.1921,-8.68694 dDocent_Contig_15132 115 . T C 127.805 . AB=0.428571;ABP=3.63072;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=52;DPB=52;DPRA=1.10526;EPP=16.0391;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.630435;PAO=0;PQA=0;PQR=0;PRO=0;QA=204;QR=1584;RO=46;RPL=0;RPP=16.0391;RPPR=102.898;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=102.898;SRR=46;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:6:6,0:6:211:0:0:0,-1.80618,-19.3337 0/0:22:22,0:22:752:0:0:0,-6.62266,-67.9966 0/1:14:8,6:8:279:6:204:-14.4794,0,-21.2342 0/0:10:10,0:10:342:0:0:0,-3.0103,-31.1098 dDocent_Contig_15133 12 . A T 151.569 . AB=0.181818;ABP=41.702;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X;DP=145;DPB=145;DPRA=0.746988;EPP=22.5536;EPPR=298.331;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=365;QR=5473;RO=136;RPL=0;RPP=22.5536;RPPR=298.331;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=136;SRP=298.331;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:44:36,8:36:1457:8:327:-16.5548,0,-118.13 0/0:48:48,0:48:1921:0:0:0,-14.4494,-173.075 0/0:35:35,0:35:1410:0:0:0,-10.536,-127.15 0/0:18:17,1:17:685:1:38:0,-1.62127,-58.1827 dDocent_Contig_15134 36 . T C 93.3889 . AB=0.238095;ABP=15.5221;AC=2;AF=0.25;AN=8;AO=5;CIGAR=1X;DP=47;DPB=47;DPRA=0.807692;EPP=13.8677;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.642857;PAO=0;PQA=0;PQR=0;PRO=0;QA=203;QR=1684;RO=42;RPL=0;RPP=13.8677;RPPR=94.2121;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:12:12,0:12:489:0:0:0,-3.61236,-44.3611 0/1:10:8,2:8:322:2:81:-4.67543,0,-26.3369 0/0:14:14,0:14:560:0:0:0,-4.21442,-50.7416 0/1:11:8,3:8:313:3:122:-8.06116,0,-25.2174 dDocent_Contig_15135 45 . T C 377.007 . AB=0.65;ABP=6.91895;AC=1;AF=0.166667;AN=6;AO=13;CIGAR=1X;DP=41;DPB=41;DPRA=1.90476;EPP=31.2394;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=499;QR=1068;RO=28;RPL=0;RPP=31.2394;RPPR=63.8115;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:7,13:7:245:13:499:-39.2236,0,-16.3583 ./.:.:.:.:.:.:.:. 0/0:14:14,0:14:556:0:0:0,-4.21442,-50.3792 0/0:7:7,0:7:267:0:0:0,-2.10721,-24.3864 dDocent_Contig_15137 122 . T G 50.875 . AB=0.3;ABP=6.48466;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=24;DPB=24;DPRA=2.14286;EPP=9.52472;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=105;QR=737;RO=21;RPL=0;RPP=9.52472;RPPR=48.6112;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=48.6112;SRR=21;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:8:8,0:8:274:0:0:0,-2.40824,-24.9932 0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827 0/0:5:5,0:5:177:0:0:0,-1.50515,-16.277 0/1:10:7,3:7:250:3:105:-6.78586,0,-19.8365 dDocent_Contig_15139 26 . A T 179.599 . AB=0.75;ABP=7.35324;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=39;DPB=39;DPRA=0.774194;EPP=16.0391;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=241;QR=1308;RO=33;RPL=0;RPP=16.0391;RPPR=74.6689;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:12:12,0:12:482:0:0:0,-3.61236,-43.7294 0/0:16:16,0:16:637:0:0:0,-4.81648,-57.6625 0/1:8:2,6:2:70:6:241:-19.6581,0,-4.23627 0/0:3:3,0:3:119:0:0:0,-0.90309,-11.095 dDocent_Contig_15140 14 . A T 170.097 . AB=0.291667;ABP=12.0581;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=97;DPB=97;DPRA=2.46429;EPP=20.3821;EPPR=196.271;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=325;QR=3582;RO=89;RPL=0;RPP=20.3821;RPPR=196.271;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=89;SRP=196.271;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:18:18,0:18:732:0:0:0,-5.41854,-66.2036 0/1:24:17,7:17:687:7:284:-18.7087,0,-54.9339 0/0:45:44,1:44:1758:1:41:0,-9.45178,-154.346 0/0:10:10,0:10:405:0:0:0,-3.0103,-36.81 dDocent_Contig_15141 74 . T C 83.742 . AB=0.25;ABP=13.8677;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=48;DPB=48;DPRA=2.14286;EPP=13.8677;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=175;QR=1429;RO=42;RPL=5;RPP=13.8677;RPPR=94.2121;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:8:8,0:8:278:0:0:0,-2.40824,-25.358 0/1:20:15,5:15:502:5:175:-10.0731,0,-39.4783 0/0:15:15,0:15:518:0:0:0,-4.51545,-46.9483 0/0:5:4,0:4:131:0:0:0,-1.20412,-11.9121 dDocent_Contig_15143 11 . T A 1057.03 . AB=0.379747;ABP=12.9331;AC=5;AF=0.625;AN=8;AO=37;CIGAR=2M1X;DP=86;DPB=86;DPRA=0;EPP=83.3548;EPPR=81.1833;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=1.38778e-17;PAIRED=0.864865;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1448;QR=1396;RO=36;RPL=0;RPP=83.3548;RPPR=81.1833;RPR=37;RUN=1;SAF=37;SAP=83.3548;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:7:0,0,0,7:0:0:0,0,7:0,0,268:-24.4817,-24.4817,-24.4817,-24.4817,-24.4817,-24.4817,-2.10721,-2.10721,-2.10721,0 0|1:10:4,0,0,6:4:159:0,0,6:0,0,235:-18.5111,-19.7152,-32.8087,-19.7152,-32.8087,-32.8087,0,-13.4882,-13.4882,-11.682 0|1:29:12,4,1,12:12:471:4,1,12:159,40,469:-34.9386,-25.4584,-62.9921,-35.2554,-60.9008,-73.6918,0,-25.6414,-35.4381,-35.1212 0|1:40:20,2,6,12:20:766:2,6,12:80,228,476:-33.1696,-32.5992,-94.8503,-20.5012,-76.7595,-81.5442,0,-56.2646,-44.1629,-59.2437 dDocent_Contig_15145 132 . A G 97.1589 . AB=0.307692;ABP=7.18621;AC=3;AF=0.375;AN=8;AO=7;CIGAR=1X;DP=29;DPB=29;DPRA=9.33333;EPP=18.2106;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=200;QR=780;RO=22;RPL=0;RPP=18.2106;RPPR=50.7827;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=50.7827;SRR=22;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:9,4:9:334:4:104:-5.70023,0,-26.4932 1/1:2:0,2:0:0:2:57:-5.41171,-0.60206,0 0/0:13:12,1:12:407:1:39:0,-0.0168255,-33.0485 0/0:1:1,0:1:39:0:0:0,-0.30103,-3.89656 dDocent_Contig_15146 40 . T C 258.651 . AB=0.183908;ABP=78.5126;AC=3;AF=0.375;AN=8;AO=16;CIGAR=1X;DP=90;DPB=90;DPRA=9.66667;EPP=37.7539;EPPR=163.699;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=626;QR=2801;RO=74;RPL=0;RPP=37.7539;RPPR=163.699;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=74;SRP=163.699;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:53:45,8:45:1729:8:312:-12.4875,0,-139.902 0/1:13:10,3:10:381:3:114:-6.71753,0,-30.7283 0/1:21:16,5:16:581:5:200:-12.0579,0,-46.2897 0/0:3:3,0:3:110:0:0:0,-0.90309,-10.2604 dDocent_Contig_15147 98 . N G 56.4926 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=3X;DP=3;DPB=57;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=1;PAIREDR=0;PAO=16;PQA=539;PQR=0;PRO=0;QA=63;QR=0;RO=0;RPL=3;RPP=9.52472;RPPR=0;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. 1|1:3:0,3:0:0:3:63:-5.64872,-0.90309,0 .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. dDocent_Contig_15148 141 . G T 63.6267 . AB=0.172414;ABP=30.0414;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=64;DPB=64;DPRA=1.65714;EPP=13.8677;EPPR=131.127;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=184;QR=2319;RO=59;RPL=0;RPP=13.8677;RPPR=131.127;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=131.127;SRR=59;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:33:33,0:33:1298:0:0:0,-9.93399,-117.09 0/1:29:24,5:24:944:5:184:-8.18621,0,-76.5338 0/0:2:2,0:2:77:0:0:0,-0.60206,-7.30883 ./.:.:.:.:.:.:.:. dDocent_Contig_15149 21 . C A 658.276 . AB=0.351351;ABP=17.2129;AC=2;AF=0.25;AN=8;AO=26;CIGAR=1X;DP=86;DPB=86;DPRA=6.16667;EPP=59.4686;EPPR=133.299;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1009;QR=2314;RO=60;RPL=0;RPP=59.4686;RPPR=133.299;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:56:37,19:37:1432:19:727:-48.8911,0,-112.265 0/0:6:6,0:6:245:0:0:0,-1.80618,-22.4295 0/0:6:6,0:6:240:0:0:0,-1.80618,-21.9757 0/1:18:11,7:11:397:7:282:-20.3344,0,-30.6339 dDocent_Contig_15150 91 . C T 55.7909 . AB=0.227273;ABP=17.2236;AC=2;AF=0.25;AN=8;AO=5;CIGAR=1X;DP=35;DPB=35;DPRA=1.69231;EPP=13.8677;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=166;QR=1044;RO=30;RPL=5;RPP=13.8677;RPPR=68.1545;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:10,3:10:356:3:103:-5.69663,0,-28.4681 0/0:2:2,0:2:57:0:0:0,-0.60206,-5.41331 0/0:11:11,0:11:394:0:0:0,-3.31133,-35.8015 0/1:9:7,2:7:237:2:63:-3.27437,0,-18.952 dDocent_Contig_15151 153 . G T 638.906 . AB=0;ABP=0;AC=2;AF=0.333333;AN=6;AO=20;CIGAR=1X;DP=43;DPB=43;DPRA=1.73913;EPP=46.4397;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=701;QR=808;RO=23;RPL=0;RPP=46.4397;RPPR=52.9542;RPR=20;RUN=1;SAF=0;SAP=46.4397;SAR=20;SRF=0;SRP=52.9542;SRR=23;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:20:0,20:0:0:20:701:-63.4134,-6.0206,0 0/0:17:17,0:17:596:0:0:0,-5.11751,-53.9677 0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4251 ./.:.:.:.:.:.:.:. dDocent_Contig_15152 29 . G C 168.316 . AB=0.272727;ABP=17.8158;AC=4;AF=0.5;AN=8;AO=9;CIGAR=1X;DP=33;DPB=33;DPRA=0;EPP=22.5536;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=361;QR=950;RO=24;RPL=0;RPP=22.5536;RPPR=55.1256;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:8,4:8:319:4:162:-11.3546,0,-25.4627 0/1:8:6,2:6:231:2:81:-5.27749,0,-18.749 0/1:7:6,1:6:240:1:41:-1.98736,0,-19.8684 0/1:6:4,2:4:160:2:77:-5.50296,0,-12.9776 dDocent_Contig_15153 11 . T C 622.009 . AB=0.380952;ABP=10.7656;AC=4;AF=0.5;AN=8;AO=24;CIGAR=1X;DP=63;DPB=63;DPRA=0;EPP=55.1256;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=966;QR=1512;RO=38;RPL=0;RPP=55.1256;RPPR=85.5263;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:18,11:18:716:11:442:-31.1983,0,-55.8368 0/1:23:13,10:13:516:10:402:-29.6168,0,-39.8619 0/1:6:4,2:4:163:2:81:-5.87955,0,-13.2522 0/1:4:3,1:3:117:1:41:-2.89045,0,-9.70558 dDocent_Contig_15154 16 . T A 1925.86 . AB=0.511628;ABP=3.0608;AC=6;AF=0.75;AN=8;AO=60;CIGAR=1X;DP=82;DPB=82;DPRA=0;EPP=133.299;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.433333;PAIREDR=0.954545;PAO=0;PQA=0;PQR=0;PRO=0;QA=2351;QR=888;RO=22;RPL=0;RPP=133.299;RPPR=50.7827;RPR=60;RUN=1;SAF=60;SAP=133.299;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:21:1,20:1:40:20:783:-66.7881,-2.32595,0 1/1:18:0,18:0:0:18:690:-62.4192,-5.41854,0 0/1:26:11,15:11:442:15:605:-46.9615,0,-32.3079 0/1:17:10,7:10:406:7:273:-19.8157,0,-31.7831 dDocent_Contig_15155 29 . G T 69.2522 . AB=0.15;ABP=45.5712;AC=2;AF=0.25;AN=8;AO=6;CIGAR=1X;DP=81;DPB=81;DPRA=0.97561;EPP=16.0391;EPPR=165.871;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=240;QR=2951;RO=75;RPL=0;RPP=16.0391;RPPR=165.871;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=75;SRP=165.871;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:28:28,0:28:1128:0:0:0,-8.42884,-101.804 0/1:32:28,4:28:1109:4:164:-5.51694,0,-90.4596 0/0:13:13,0:13:496:0:0:0,-3.91339,-44.9778 0/1:8:6,2:6:218:2:76:-4.80602,0,-17.5608 dDocent_Contig_15156 11 . G A 425.759 . AB=0.103493;ABP=1058.6;AC=2;AF=0.25;AN=8;AO=144;CIGAR=1X;DP=1784;DPB=1784;DPRA=0;EPP=315.702;EPPR=3549.02;GTI=0;LEN=1;MEANALT=1.75;MQM=58.1111;MQMR=59.8677;NS=4;NUMALT=1;ODDS=1.11022e-16;PAIRED=0.0694444;PAIREDR=0.061237;PAO=0;PQA=0;PQR=0;PRO=0;QA=5528;QR=63613;RO=1633;RPL=0;RPP=315.702;RPPR=3549.02;RPR=144;RUN=1;SAF=144;SAP=315.702;SAR=0;SRF=1633;SRP=3549.02;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:562:507,55:507:19794:55:2118:-21.5845,0,-1610.54 0/0:491:453,38:453:17592:38:1457:0,-16.4883,-1450.77 0/0:520:488,26:488:19055:26:977:0,-67.1656,-1623.16 0/1:211:185,25:185:7172:25:976:-24.3893,0,-581.669 dDocent_Contig_15159 12 . G T 139.69 . AB=0.206897;ABP=24.6501;AC=4;AF=0.5;AN=8;AO=7;CIGAR=1X;DP=37;DPB=37;DPRA=1.42857;EPP=18.2106;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.285714;PAIREDR=0.533333;PAO=0;PQA=0;PQR=0;PRO=0;QA=277;QR=1187;RO=30;RPL=0;RPP=18.2106;RPPR=68.1545;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:8,2:8:307:2:77:-4.29853,0,-24.9778 1/1:1:0,1:0:0:1:41:-4.09457,-0.30103,0 0/0:7:7,0:7:286:0:0:0,-2.10721,-26.1148 0/1:19:15,4:15:594:4:159:-8.97276,0,-48.0794 dDocent_Contig_15161 16 . G A 83.337 . AB=0.222222;ABP=15.074;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=36;DPB=36;DPRA=3;EPP=11.6962;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=164;QR=1287;RO=32;RPL=0;RPP=11.6962;RPPR=72.4974;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:14,4:14:566:4:164:-9.73136,0,-45.8637 0/0:9:9,0:9:360:0:0:0,-2.70927,-32.7629 0/0:7:7,0:7:280:0:0:0,-2.10721,-25.5707 0/0:2:2,0:2:81:0:0:0,-0.60206,-7.68573 dDocent_Contig_15162 106 . N T 325.457 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=10;CIGAR=2X;DP=10;DPB=10;DPRA=0;EPP=24.725;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=345;QR=0;RO=0;RPL=0;RPP=24.725;RPPR=0;RPR=10;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:2:0,2:0:0:2:70:-6.6474,-0.60206,0 1|1:3:0,3:0:0:3:98:-9.14357,-0.90309,0 .:.:.:.:.:.:.:. 1|1:5:0,5:0:0:5:177:-16.277,-1.50515,0 dDocent_Contig_15165 17 . A T 143.992 . AB=0.25;ABP=18.2106;AC=2;AF=0.25;AN=8;AO=7;CIGAR=1X;DP=80;DPB=80;DPRA=0.538462;EPP=18.2106;EPPR=161.528;GTI=0;LEN=1;MEANALT=1;MQM=56;MQMR=58.5205;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.931507;PAO=0;PQA=0;PQR=0;PRO=0;QA=285;QR=2917;RO=73;RPL=0;RPP=18.2106;RPPR=161.528;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=73;SRP=161.528;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:36:36,0:36:1432:0:0:0,-10.8371,-129.137 0/0:16:16,0:16:638:0:0:0,-4.81648,-57.7562 0/1:15:13,2:13:522:2:82:-3.04784,0,-42.0333 0/1:13:8,5:8:325:5:203:-14.7397,0,-23.3561 dDocent_Contig_15166 143 . T A 166.625 . AB=0;ABP=0;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=21;DPB=21;DPRA=0.625;EPP=13.8677;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=176;QR=543;RO=16;RPL=0;RPP=13.8677;RPPR=37.7539;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=37.7539;SRR=16;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:5:0,5:0:0:5:176:-16.1853,-1.50515,0 0/0:11:11,0:11:365:0:0:0,-3.31133,-33.1667 0/0:5:5,0:5:178:0:0:0,-1.50515,-16.3686 ./.:.:.:.:.:.:.:. dDocent_Contig_15167 19 . G A 482.993 . AB=0.434783;ABP=3.86001;AC=3;AF=0.375;AN=8;AO=16;CIGAR=1X3M7I3M1D1M1X;DP=48;DPB=58.2;DPRA=1.52632;EPP=37.7539;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=621;QR=1227;RO=31;RPL=0;RPP=37.7539;RPPR=70.3259;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:6:0,6:0:0:6:234:-21.4311,-1.80618,0 0|1:23:12,10:12:476:10:387:-28.2661,0,-36.2718 0|0:13:13,0:13:514:0:0:0,-3.91339,-46.6079 0|0:6:6,0:6:237:0:0:0,-1.80618,-21.7035 dDocent_Contig_15168 9 . G A 92.1763 . AB=0;ABP=0;AC=0;AF=0;AN=8;AO=3;CIGAR=2X;DP=105;DPB=105;DPRA=0;EPP=9.52472;EPPR=200.614;GTI=0;LEN=1;MEANALT=2;MQM=14;MQMR=51.4176;NS=4;NUMALT=2;ODDS=6.93889e-18;PAIRED=0;PAIREDR=0.615385;PAO=0;PQA=0;PQR=0;PRO=0;QA=107;QR=3435;RO=91;RPL=0;RPP=9.52472;RPPR=200.614;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=91;SRP=200.614;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:43:36,0,7:36:1366:0,7:0,274:-9.62747,-20.4646,-129.354,0,-109.245,-107.137 0|0:23:22,1,0:22:819:1,0:29,0:0,-5.53668,-71.0267,-6.62266,-71.3277,-72.2652 0|0:25:21,2,1:21:801:2,1:78,41:0,-4.52457,-65.1317,-2.89217,-62.3522,-63.9487 0|0:14:12,0,2:12:449:0,2:0,80:-2.97679,-6.58915,-40.4542,0,-34.2391,-33.637 dDocent_Contig_15169 15 . A T 747.166 . AB=0.276786;ABP=51.4807;AC=3;AF=0.375;AN=8;AO=31;CIGAR=1X;DP=118;DPB=118;DPRA=6.22222;EPP=70.3259;EPPR=191.928;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.935484;PAIREDR=0.988506;PAO=0;PQA=0;PQR=0;PRO=0;QA=1253;QR=3512;RO=87;RPL=0;RPP=70.3259;RPPR=191.928;RPR=31;RUN=1;SAF=31;SAP=70.3259;SAR=0;SRF=87;SRP=191.928;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:16,9:16:650:9:366:-25.7794,0,-51.3072 0/1:66:48,18:48:1932:18:733:-46.4255,0,-154.208 0/1:21:17,4:17:685:4:154:-7.90955,0,-55.6568 0/0:6:6,0:6:245:0:0:0,-1.80618,-22.4295 dDocent_Contig_15170 150 . T G 84.1521 . AB=0.5;ABP=3.0103;AC=3;AF=0.375;AN=8;AO=4;CIGAR=1X;DP=31;DPB=31;DPRA=1.38889;EPP=11.6962;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=153;QR=1019;RO=27;RPL=0;RPP=11.6962;RPPR=61.6401;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=61.6401;SRR=27;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1:0,1:0:0:1:39:-3.89656,-0.30103,0 0/1:4:2,2:2:75:2:75:-5.91598,0,-5.91598 0/0:6:6,0:6:234:0:0:0,-1.80618,-21.4311 0/0:20:19,1:19:710:1:39:0,-2.12404,-60.3291 dDocent_Contig_15171 78 . T G 164.77 . AB=0.32;ABP=10.0459;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=27;DPB=27;DPRA=6.25;EPP=20.3821;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=296;QR=721;RO=19;RPL=8;RPP=20.3821;RPPR=44.2683;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:2:2,0:2:76:0:0:0,-0.60206,-7.21467 0/1:18:11,7:11:421:7:259:-18.2476,0,-32.8225 0/1:7:6,1:6:224:1:37:-1.59062,0,-18.4121 ./.:.:.:.:.:.:.:. dDocent_Contig_15174 20 . G A 173.89 . AB=0.411765;ABP=4.1599;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=62;DPB=62;DPRA=1.13333;EPP=18.2106;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.890909;PAO=0;PQA=0;PQR=0;PRO=0;QA=265;QR=2202;RO=55;RPL=0;RPP=18.2106;RPPR=122.441;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:28:28,0:28:1123:0:0:0,-8.42884,-101.341 0/1:17:10,7:10:403:7:265:-19.0879,0,-31.512 0/0:13:13,0:13:521:0:0:0,-3.91339,-47.2322 0/0:4:4,0:4:155:0:0:0,-1.20412,-14.3242 dDocent_Contig_15175 33 . C G 331.432 . AB=0.15;ABP=24.2907;AC=0;AF=0;AN=8;AO=3;CIGAR=1X3M1X2M;DP=72;DPB=72;DPRA=0;EPP=9.52472;EPPR=111.584;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=0.76;PAO=0;PQA=0;PQR=0;PRO=0;QA=121;QR=1967;RO=50;RPL=0;RPP=9.52472;RPPR=111.584;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:20:10,3,0,0,7:10:387:3,0,0,7:121,0,0,279:-19.9613,-12.996,-43.8696,-22.9716,-44.7727,-54.7487,-22.9716,-44.7727,-54.7487,-54.7487,0,-21.793,-31.771,-31.771,-29.6638 0|0:30:21,0,0,3,6:21:830:0,0,3,6:0,0,119,245:-13.9016,-20.2232,-88.5148,-20.2232,-88.5148,-88.5148,-10.4319,-78.7198,-78.7198,-77.8167,0,-68.2968,-68.2968,-58.5014,-66.4906 0|0:10:8,0,2,0,0:8:320:0,2,0,0:0,81,0,0:-4.67543,-7.08367,-33.44,0,-26.7598,-26.1577,-7.08367,-33.44,-26.7598,-33.44,-7.08367,-33.44,-26.7598,-33.44,-33.44 0|0:12:11,0,1,0,0:11:430:0,1,0,0:0,40,0,0:-0.383319,-3.69465,-39.0381,0,-35.7422,-35.4412,-3.69465,-39.0381,-35.7422,-39.0381,-3.69465,-39.0381,-35.7422,-39.0381,-39.0381 dDocent_Contig_15177 22 . C A 1378.46 . AB=0.219269;ABP=209.055;AC=4;AF=0.5;AN=8;AO=66;CIGAR=1X;DP=301;DPB=301;DPRA=0;EPP=146.327;EPPR=513.306;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=58.5404;NS=4;NUMALT=1;ODDS=0;PAIRED=0.348485;PAIREDR=0.480851;PAO=0;PQA=0;PQR=0;PRO=0;QA=2606;QR=9330;RO=235;RPL=0;RPP=146.327;RPPR=513.306;RPR=66;RUN=1;SAF=66;SAP=146.327;SAR=0;SRF=235;SRP=513.306;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:97:80,17:80:3184:17:681:-32.4218,0,-256.446 0/1:67:56,11:56:2204:11:432:-19.0631,0,-164.575 0/1:90:66,24:66:2612:24:959:-59.5171,0,-207.879 0/1:47:33,14:33:1330:14:534:-34.2423,0,-105.812 dDocent_Contig_15178 49 . C T 203.548 . AB=0.159091;ABP=91.8433;AC=4;AF=0.5;AN=8;AO=14;CIGAR=1X;DP=88;DPB=88;DPRA=0;EPP=33.4109;EPPR=155.131;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=566;QR=2978;RO=74;RPL=0;RPP=33.4109;RPPR=155.131;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=74;SRP=163.699;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:34:29,5:29:1163:5:201:-8.2355,0,-94.7141 0/1:18:13,5:13:524:5:203:-13.2345,0,-42.0887 0/1:25:23,2:23:924:2:82:-0.253928,0,-75.9396 0/1:11:9,2:9:367:2:80:-4.28025,0,-30.0839 dDocent_Contig_15179 41 . A G 236.367 . AB=0.37037;ABP=6.95112;AC=3;AF=0.375;AN=8;AO=10;CIGAR=1X;DP=32;DPB=32;DPRA=1.8;EPP=24.725;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=400;QR=883;RO=22;RPL=0;RPP=24.725;RPPR=50.7827;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:7:3,4:3:123:4:155:-12.217,0,-9.35758 0/0:5:5,0:5:201:0:0:0,-1.50515,-18.4705 0/1:8:6,2:6:241:2:82:-5.37144,0,-19.6576 0/1:12:8,4:8:318:4:163:-11.4461,0,-25.3745 dDocent_Contig_15182 25 . A G 151.194 . AB=0.307692;ABP=11.3621;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X2M1X;DP=32;DPB=32;DPRA=2.16667;EPP=20.3821;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=40;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.791667;PAO=0;PQA=0;PQR=0;PRO=0;QA=303;QR=964;RO=24;RPL=0;RPP=20.3821;RPPR=55.1256;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:6:6,0:6:242:0:0:0,-1.80618,-22.1575 0|1:18:14,4:14:560:4:154:-7.96382,0,-45.3252 0|1:8:4,4:4:162:4:149:-10.6785,0,-12.5587 .:.:.:.:.:.:.:. dDocent_Contig_15183 148 . G A 47.1882 . AB=0.222222;ABP=15.074;AC=2;AF=0.25;AN=8;AO=4;CIGAR=1X;DP=29;DPB=29;DPRA=1.63636;EPP=11.6962;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=139;QR=905;RO=25;RPL=0;RPP=11.6962;RPPR=57.2971;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=57.2971;SRR=25;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:4:4,0:4:148:0:0:0,-1.20412,-13.682 0/0:7:7,0:7:254:0:0:0,-2.10721,-23.2107 0/1:11:8,3:8:281:3:104:-6.39176,0,-22.3171 0/1:7:6,1:6:222:1:35:-1.39142,0,-18.2309 dDocent_Contig_15184 150 . C T 90.1419 . AB=0.294118;ABP=9.26925;AC=2;AF=0.25;AN=8;AO=5;CIGAR=1X;DP=40;DPB=40;DPRA=0.73913;EPP=13.8677;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=40;MQMR=40;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=203;QR=1409;RO=35;RPL=0;RPP=13.8677;RPPR=79.0118;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=79.0118;SRR=35;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:19:19,0:19:764:0:0:0,-5.71957,-63.6963 0/1:14:10,4:10:406:4:162:-9.55372,0,-29.6881 0/1:3:2,1:2:82:1:41:-2.84303,0,-6.21453 0/0:4:4,0:4:157:0:0:0,-1.20412,-13.4505 dDocent_Contig_15185 13 . A G 3569.84 . AB=0.55618;ABP=7.89001;AC=5;AF=0.625;AN=8;AO=122;CIGAR=1X2M1X;DP=203;DPB=203;DPRA=0;EPP=267.93;EPPR=150.67;GTI=0;LEN=1;MEANALT=1.75;MQM=53.0984;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4641;QR=2657;RO=68;RPL=0;RPP=267.93;RPPR=150.67;RPR=122;RUN=1;SAF=122;SAP=267.93;SAR=0;SRF=68;SRP=150.67;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:84:35,40,9:35:1364:40,9:1520,361:-113.571,0,-100.056,-94.3616,-82.3529,-203.763 0|1:55:24,31,0:24:947:31,0:1192,0:-90.6632,0,-68.9806,-97.8879,-78.3125,-175.811 1|1:25:1,23,1:1:40:23,1:878,41:-74.8969,-3.63355,0,-71.8125,-3.53467,-74.8074 0|1:39:8,28,3:8:306:28,3:1051,121:-83.2511,0,-16.664,-75.6822,-15.1129,-99.889 dDocent_Contig_15186 79 . C T 423.57 . AB=0.212963;ABP=80.2986;AC=3;AF=0.375;AN=8;AO=25;CIGAR=1X;DP=151;DPB=151;DPRA=0;EPP=57.2971;EPPR=276.616;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=0.984127;PAO=0;PQA=0;PQR=0;PRO=0;QA=941;QR=4894;RO=126;RPL=25;RPP=57.2971;RPPR=276.616;RPR=0;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=126;SRP=276.616;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:60:51,9:51:1990:9:329:-11.8914,0,-161.262 0/1:25:13,12:13:497:12:456:-33.8603,0,-37.5492 0/0:43:41,2:41:1602:2:78:0,-5.54082,-137.032 0/1:23:21,2:21:805:2:78:-0.479783,0,-65.8466 dDocent_Contig_15187 7 . A T 262.323 . AB=0.236364;ABP=36.2141;AC=2;AF=0.25;AN=8;AO=13;CIGAR=1X;DP=116;DPB=116;DPRA=0.901639;EPP=31.2394;EPPR=224.5;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=59.9706;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=503;QR=3887;RO=102;RPL=0;RPP=31.2394;RPPR=224.5;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=102;SRP=224.5;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:32:32,0:32:1211:0:0:0,-9.63296,-109.283 0/0:29:29,0:29:1106:0:0:0,-8.72987,-99.8429 0/1:43:31,11:31:1190:11:425:-25.8373,0,-94.6437 0/1:12:10,2:10:380:2:78:-3.79111,0,-30.9413 dDocent_Contig_15188 19 . T A 1559.24 . 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G A 245.917 . AB=0.45;ABP=3.44459;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X;DP=42;DPB=42;DPRA=2.72727;EPP=22.5536;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.888889;PAIREDR=0.787879;PAO=0;PQA=0;PQR=0;PRO=0;QA=355;QR=1336;RO=33;RPL=0;RPP=22.5536;RPPR=74.6689;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:6:6,0:6:242:0:0:0,-1.80618,-22.1569 0/1:20:11,9:11:446:9:355:-26.2906,0,-34.475 0/0:8:8,0:8:324:0:0:0,-2.40824,-29.5283 0/0:8:8,0:8:324:0:0:0,-2.40824,-29.5294 dDocent_Contig_15190 68 . T A 330.663 . AB=0.310345;ABP=12.0706;AC=1;AF=0.125;AN=8;AO=9;CIGAR=3M1X14M;DP=55;DPB=55.6667;DPRA=0;EPP=22.5536;EPPR=57.2971;GTI=0;LEN=1;MEANALT=3.5;MQM=60;MQMR=60;NS=4;NUMALT=6;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=328;QR=859;RO=25;RPL=9;RPP=22.5536;RPPR=57.2971;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:19:8,0,0,0,2,0,8:8:275:0,0,0,2,0,8:0,0,0,74,0,289:-21.1738,-23.5821,-45.9062,-23.5821,-45.9062,-45.9062,-23.5821,-45.9062,-45.9062,-45.9062,-17.5266,-39.8504,-39.8504,-39.8504,-39.2483,-23.5821,-45.9062,-45.9062,-45.9062,-39.8504,-45.9062,0,-22.3134,-22.3134,-22.3134,-16.2551,-22.3134,-19.9052 0|0:19:11,4,0,4,0,0,0:11:376:4,0,4,0,0,0:118,0,98,0,0,0:-6.12787,0,-29.3836,-9.4392,-30.5877,-39.9975,-1.84892,-22.9982,-32.4,-31.1959,-9.4392,-30.5877,-39.9975,-32.4,-39.9975,-9.4392,-30.5877,-39.9975,-32.4,-39.9975,-39.9975,-9.4392,-30.5877,-39.9975,-32.4,-39.9975,-39.9975,-39.9975 0|0:10:3,2,3,0,0,0,1:3:103:2,3,0,0,0,1:53,108,0,0,0,39:-7.92499,-4.68992,-12.4422,0,-4.23144,-7.46935,-8.82808,-13.0442,-8.37244,-17.193,-8.82808,-13.0442,-8.37244,-17.193,-17.193,-8.82808,-13.0442,-8.37244,-17.193,-17.193,-17.193,-5.61366,-9.83389,-5.15684,-13.9816,-13.9816,-13.9816,-13.6806 0|0:7:3,1,0,0,0,2,0:3:105:1,0,0,0,2,0:33,0,0,0,74,0:-5.23586,-3.45574,-11.7379,-6.13895,-12.039,-14.71,-6.13895,-12.039,-14.71,-14.71,-6.13895,-12.039,-14.71,-14.71,-14.71,0,-5.95496,-8.63315,-8.63315,-8.63315,-8.03109,-6.13895,-12.039,-14.71,-14.71,-14.71,-8.63315,-14.71 dDocent_Contig_15194 15 . C T 131.592 . AB=0.416667;ABP=3.73412;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=58;DPB=58;DPRA=0.782609;EPP=13.8677;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=201;QR=2147;RO=53;RPL=0;RPP=13.8677;RPPR=118.098;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:19:19,0:19:775:0:0:0,-5.71957,-70.0679 0/0:13:13,0:13:525:0:0:0,-3.91339,-47.5959 0/1:12:7,5:7:282:5:201:-14.8582,0,-22.14 0/0:14:14,0:14:565:0:0:0,-4.21442,-51.1929 dDocent_Contig_15195 59 . G A 590.851 . AB=0.133333;ABP=20.5268;AC=0;AF=0;AN=8;AO=2;CIGAR=1X2M1X;DP=40;DPB=40;DPRA=2.5;EPP=7.35324;EPPR=42.0968;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.888889;PAO=0;PQA=0;PQR=0;PRO=0;QA=78;QR=715;RO=18;RPL=2;RPP=7.35324;RPPR=42.0968;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:9:9,0,0:9:357:0,0:0,0:0,-2.70927,-32.4937,-2.70927,-32.4937,-32.4937 0|0:15:8,2,5:8:317:2,5:78,198:-13.8921,-9.89048,-35.3813,0,-19.6873,-24.5925 0|0:13:1,0,12:1:41:0,12:0,477:-39.3659,-39.6669,-43.052,0,-3.79354,-0.181177 0|0:3:0,0,2:0:0:0,2:0,82:-7.40402,-7.40402,-7.40402,-0.60206,-0.60206,0 dDocent_Contig_15196 62 . C T 833.463 . AB=0.577778;ABP=5.37479;AC=4;AF=0.666667;AN=6;AO=29;CIGAR=1X;DP=48;DPB=48;DPRA=0;EPP=65.983;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.103448;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1104;QR=766;RO=19;RPL=29;RPP=65.983;RPPR=44.2683;RPR=0;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:34:13,21:13:525:21:797:-61.8047,0,-37.3615 1/1:3:0,3:0:0:3:118:-11.0027,-0.90309,0 0/1:11:6,5:6:241:5:189:-14.0615,0,-18.755 ./.:.:.:.:.:.:.:. dDocent_Contig_15197 45 . T C 38.2003 . AB=0.4;ABP=3.44459;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X;DP=34;DPB=34;DPRA=0.517241;EPP=7.35324;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=74;QR=1234;RO=32;RPL=0;RPP=7.35324;RPPR=72.4974;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:4:4,0:4:156:0:0:0,-1.20412,-14.4168 0/0:10:10,0:10:393:0:0:0,-3.0103,-35.729 0/0:15:15,0:15:569:0:0:0,-4.51545,-51.5438 0/1:5:3,2:3:116:2:74:-5.51887,0,-9.31255 dDocent_Contig_15198 96 . A T 200.344 . AB=0.172727;ABP=105.346;AC=3;AF=0.375;AN=8;AO=19;CIGAR=1X;DP=124;DPB=124;DPRA=2.61905;EPP=44.2683;EPPR=228.843;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=635;QR=3455;RO=104;RPL=19;RPP=44.2683;RPPR=228.843;RPR=0;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=104;SRP=228.843;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:50:42,8:42:1410:8:270:-9.57813,0,-112.141 0/1:25:17,7:17:569:7:234:-13.815,0,-43.9535 0/1:35:31,4:31:1001:4:131:-1.57801,0,-79.8472 0/0:14:14,0:14:475:0:0:0,-4.21442,-43.075 dDocent_Contig_15200 18 . C G 31.8943 . AB=0.0978261;ABP=132.26;AC=1;AF=0.125;AN=8;AO=12;CIGAR=1X;DP=295;DPB=295;DPRA=1.39837;EPP=21.1059;EPPR=471.135;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.0742049;PAO=0;PQA=0;PQR=0;PRO=0;QA=475;QR=11303;RO=283;RPL=0;RPP=29.068;RPPR=617.537;RPR=12;RUN=1;SAF=11;SAP=21.1059;SAR=1;SRF=265;SRP=471.135;SRR=18;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:62:62,0:62:2448:0:0:0,-18.6639,-220.472 0/1:92:83,9:83:3312:9:358:-4.88812,0,-270.438 0/0:80:77,3:77:3104:3:117:0,-13.1722,-268.517 0/0:61:61,0:61:2439:0:0:0,-18.3628,-219.656 dDocent_Contig_15201 10 . G A 331.512 . AB=0.216867;ABP=60.8029;AC=3;AF=0.375;AN=8;AO=21;CIGAR=1X;DP=121;DPB=121;DPRA=0;EPP=48.6112;EPPR=220.158;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.52381;PAIREDR=0.63;PAO=0;PQA=0;PQR=0;PRO=0;QA=816;QR=3998;RO=100;RPL=0;RPP=48.6112;RPPR=220.158;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=100;SRP=220.158;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:38:35,3:35:1406:3:122:0,-0.066647,-115.42 0/1:32:25,7:25:1007:7:281:-16.029,0,-81.2896 0/1:22:18,4:18:698:4:138:-6.13467,0,-56.5145 0/1:29:22,7:22:887:7:275:-16.3845,0,-71.4081 dDocent_Contig_15202 157 . T G 243.274 . AB=0.25;ABP=29.068;AC=3;AF=0.375;AN=8;AO=12;CIGAR=1X;DP=70;DPB=70;DPRA=0.727273;EPP=29.068;EPPR=128.956;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=478;QR=2167;RO=58;RPL=0;RPP=29.068;RPPR=128.956;RPR=12;RUN=1;SAF=0;SAP=29.068;SAR=12;SRF=0;SRP=128.956;SRR=58;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:13,4:13:481:4:162:-9.84945,0,-38.5109 0/0:22:22,0:22:846:0:0:0,-6.62266,-76.4614 0/1:17:11,6:11:380:6:236:-16.4942,0,-29.4045 0/1:14:12,2:12:460:2:80:-3.37716,0,-37.5337 dDocent_Contig_15205 31 . A G 153.424 . AB=0.15942;ABP=72.5289;AC=4;AF=0.5;AN=8;AO=11;CIGAR=1X;DP=69;DPB=69;DPRA=0;EPP=26.8965;EPPR=128.956;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.982759;PAO=0;PQA=0;PQR=0;PRO=0;QA=449;QR=2318;RO=58;RPL=0;RPP=26.8965;RPPR=128.956;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:14,3:14:552:3:122:-6.25498,0,-44.9045 0/1:12:11,1:11:440:1:41:-0.482207,0,-36.3415 0/1:21:18,3:18:729:3:123:-5.14316,0,-59.6127 0/1:19:15,4:15:597:4:163:-9.33886,0,-48.3476 dDocent_Contig_15207 17 . C T 41.4565 . AB=0.133333;ABP=38.0434;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=83;DPB=83;DPRA=1.76667;EPP=13.8677;EPPR=172.385;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.5;PAO=0;PQA=0;PQR=0;PRO=0;QA=202;QR=3150;RO=78;RPL=0;RPP=13.8677;RPPR=172.385;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=78;SRP=172.385;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:22:22,0:22:887:0:0:0,-6.62266,-80.1368 0/0:8:8,0:8:327:0:0:0,-2.40824,-29.8001 0/1:30:26,4:26:1047:4:161:-5.84458,0,-85.4885 0/0:23:22,1:22:889:1:41:0,-2.82912,-76.222 dDocent_Contig_15208 22 . T C 52.481 . AB=0.146341;ABP=47.552;AC=3;AF=0.375;AN=8;AO=6;CIGAR=1X;DP=60;DPB=60;DPRA=0.719298;EPP=16.0391;EPPR=111.745;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=0.666667;PAIREDR=0.851852;PAO=0;PQA=0;PQR=0;PRO=0;QA=241;QR=2157;RO=54;RPL=0;RPP=16.0391;RPPR=120.27;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=53;SRP=111.745;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:7:6,1:6:237:1:41:-1.98736,0,-19.5931 0/1:19:16,3:16:643:3:119:-5.37544,0,-52.4845 0/1:15:13,2:13:512:2:81:-3.17028,0,-41.9099 0/0:19:19,0:19:765:0:0:0,-5.71957,-69.171 dDocent_Contig_15209 99 . N T 104.464 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=2X1I8X;DP=3;DPB=3.3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=112;QR=0;RO=0;RPL=3;RPP=9.52472;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. 1|1:3:0,3:0:0:3:112:-10.4459,-0.90309,0 dDocent_Contig_15211 117 . G A 202.914 . AB=0.571429;ABP=3.63072;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=38;DPB=38;DPRA=1.75;EPP=20.3821;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=284;QR=1040;RO=30;RPL=0;RPP=20.3821;RPPR=68.1545;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=68.1545;SRR=30;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:6,8:6:205:8:284:-21.6892,0,-14.5709 0/0:3:3,0:3:105:0:0:0,-0.90309,-9.79616 0/0:9:9,0:9:314:0:0:0,-2.70927,-28.5979 0/0:12:12,0:12:416:0:0:0,-3.61236,-37.7727 dDocent_Contig_15212 18 . A G 497.912 . AB=0.387755;ABP=8.37251;AC=2;AF=0.25;AN=8;AO=21;CIGAR=1X;DP=83;DPB=83;DPRA=0;EPP=48.6112;EPPR=137.642;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.619048;PAIREDR=0.790323;PAO=0;PQA=0;PQR=0;PRO=0;QA=823;QR=2443;RO=62;RPL=0;RPP=48.6112;RPPR=137.642;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:20:19,1:19:740:1:37:0,-2.32277,-63.2209 0/1:27:13,14:13:503:14:555:-42.163,0,-37.4834 0/0:14:13,1:13:526:1:39:0,-0.317855,-43.7902 0/1:22:17,5:17:674:5:192:-11.0256,0,-54.3658 dDocent_Contig_15214 12 . G A 174.19 . AB=0.215385;ABP=48.7448;AC=3;AF=0.375;AN=8;AO=14;CIGAR=1X;DP=76;DPB=76;DPRA=1.9697;EPP=12.937;EPPR=137.642;GTI=0;LEN=1;MEANALT=1;MQM=38.7143;MQMR=55.6452;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=0.285714;PAIREDR=0.419355;PAO=0;PQA=0;PQR=0;PRO=0;QA=537;QR=2485;RO=62;RPL=0;RPP=33.4109;RPPR=137.642;RPR=14;RUN=1;SAF=11;SAP=12.937;SAR=3;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:15,6:15:601:6:237:-13.1416,0,-47.555 0/1:10:6,4:6:244:4:145:-7.67135,0,-19.3283 0/1:34:30,4:30:1202:4:155:-0.575089,0,-97.4282 0/0:11:11,0:11:438:0:0:0,-3.31133,-39.3527 dDocent_Contig_15215 29 . A G 283.683 . AB=0.434783;ABP=3.86001;AC=1;AF=0.125;AN=8;AO=10;CIGAR=1X;DP=36;DPB=36;DPRA=5.30769;EPP=24.725;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=407;QR=1016;RO=26;RPL=0;RPP=24.725;RPPR=59.4686;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:8:8,0:8:325:0:0:0,-2.40824,-29.6196 0/1:23:13,10:13:499:10:407:-30.0669,0,-38.3205 0/0:2:2,0:2:82:0:0:0,-0.60206,-7.77968 0/0:3:3,0:3:110:0:0:0,-0.90309,-10.2585 dDocent_Contig_15217 43 . A G 140.407 . AB=0.333333;ABP=7.35324;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=30;DPB=30;DPRA=4.5;EPP=16.0391;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=231;QR=881;RO=24;RPL=0;RPP=16.0391;RPPR=55.1256;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:9:9,0:9:316:0:0:0,-2.70927,-28.769 0/1:18:12,6:12:453:6:231:-15.7388,0,-35.6982 0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83664 0/0:1:1,0:1:40:0:0:0,-0.30103,-3.99568 dDocent_Contig_15218 9 . G A 109.566 . AB=0.230769;ABP=19.3799;AC=2;AF=0.25;AN=8;AO=7;CIGAR=1X;DP=56;DPB=56;DPRA=1.22222;EPP=18.2106;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.836735;PAO=0;PQA=0;PQR=0;PRO=0;QA=266;QR=1882;RO=49;RPL=0;RPP=18.2106;RPPR=109.412;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:18:17,1:17:646:1:39:0,-1.52198,-54.5784 0/1:10:9,1:9:344:1:37:-0.687529,0,-28.3074 0/1:16:11,5:11:425:5:190:-12.6503,0,-33.788 0/0:12:12,0:12:467:0:0:0,-3.61236,-42.3824 dDocent_Contig_15219 11 . C T 100.692 . AB=0.269231;ABP=15.0369;AC=3;AF=0.5;AN=6;AO=7;CIGAR=1X;DP=26;DPB=26;DPRA=0;EPP=18.2106;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.714286;PAIREDR=0.947368;PAO=0;PQA=0;PQR=0;PRO=0;QA=246;QR=764;RO=19;RPL=0;RPP=18.2106;RPPR=44.2683;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:13,3:13:519:3:106:-5.07241,0,-42.2386 ./.:.:.:.:.:.:.:. 0/1:6:5,1:5:204:1:37:-1.89165,0,-16.9379 0/1:4:1,3:1:41:3:103:-8.40472,0,-2.89045 dDocent_Contig_15220 39 . A C 81.3459 . AB=0.5;ABP=3.0103;AC=3;AF=0.375;AN=8;AO=3;CIGAR=1X;DP=48;DPB=48;DPRA=0.116279;EPP=3.73412;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=111;QR=1748;RO=45;RPL=2;RPP=3.73412;RPPR=100.727;RPR=1;RUN=1;SAF=2;SAP=3.73412;SAR=1;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1:0,1:0:0:1:40:-3.99568,-0.30103,0 0/1:4:2,2:2:79:2:71:-5.53626,0,-6.29312 0/0:24:24,0:24:956:0:0:0,-7.22472,-86.3444 0/0:19:19,0:19:713:0:0:0,-5.71957,-64.4749 dDocent_Contig_15221 14 . T C 74.7402 . AB=0.375;ABP=4.09604;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=38;DPB=38;DPRA=0.8;EPP=9.52472;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.942857;PAO=0;PQA=0;PQR=0;PRO=0;QA=121;QR=1395;RO=35;RPL=0;RPP=9.52472;RPPR=79.0118;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:8:5,3:5:204:3:121:-8.87196,0,-16.3358 0/0:11:11,0:11:436:0:0:0,-3.31133,-39.591 0/0:9:9,0:9:347:0:0:0,-2.70927,-31.5807 0/0:10:10,0:10:408:0:0:0,-3.0103,-37.0806 dDocent_Contig_15223 19 . G A 250.073 . AB=0.182927;ABP=74.6159;AC=3;AF=0.375;AN=8;AO=15;CIGAR=1X;DP=106;DPB=106;DPRA=1.13889;EPP=35.5824;EPPR=200.614;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=590;QR=3637;RO=91;RPL=0;RPP=35.5824;RPPR=200.614;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=91;SRP=200.614;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:10,7:10:398:7:272:-19.7221,0,-31.059 0/1:22:20,2:20:801:2:82:-1.15702,0,-65.7825 0/1:43:37,6:37:1474:6:236:-8.66785,0,-119.957 0/0:24:24,0:24:964:0:0:0,-7.22472,-87.0593 dDocent_Contig_15225 173 . G A 36.727 . AB=0.25;ABP=7.35324;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X;DP=74;DPB=74;DPRA=0.363636;EPP=7.35324;EPPR=159.356;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=2852;RO=72;RPL=2;RPP=7.35324;RPPR=159.356;RPR=0;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=159.356;SRR=72;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:40:40,0:40:1558:0:0:0,-12.0412,-140.454 0/0:23:23,0:23:927:0:0:0,-6.92369,-83.7328 0/1:8:6,2:6:245:2:82:-5.37144,0,-20.0212 0/0:3:3,0:3:122:0:0:0,-0.90309,-11.3725 dDocent_Contig_15226 13 . T C 1045.42 . AB=0.402062;ABP=11.0918;AC=4;AF=0.5;AN=8;AO=39;CIGAR=1X;DP=97;DPB=97;DPRA=0;EPP=87.6977;EPPR=128.956;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.327586;PAO=0;PQA=0;PQR=0;PRO=0;QA=1552;QR=2027;RO=58;RPL=0;RPP=87.6977;RPPR=128.956;RPR=39;RUN=1;SAF=39;SAP=87.6977;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:37:20,17:20:713:17:666:-49.1278,0,-53.3549 0/1:40:24,16:24:820:16:643:-46.1625,0,-62.0609 0/1:4:3,1:3:113:1:41:-2.89045,0,-9.33518 0/1:16:11,5:11:381:5:202:-13.7454,0,-29.8048 dDocent_Contig_15227 156 . A T 373.277 . AB=0.451613;ABP=3.64073;AC=2;AF=0.25;AN=8;AO=15;CIGAR=1X;DP=62;DPB=62;DPRA=1.54545;EPP=35.5824;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=588;QR=1848;RO=47;RPL=0;RPP=35.5824;RPPR=105.07;RPR=15;RUN=1;SAF=0;SAP=35.5824;SAR=15;SRF=0;SRP=105.07;SRR=47;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:11,0:11:430:0:0:0,-3.31133,-39.0537 0/0:20:19,1:19:752:1:40:0,-2.02492,-64.0095 0/1:22:13,9:13:508:9:351:-25.3285,0,-39.4449 0/1:9:4,5:4:158:5:197:-15.3971,0,-11.8907 dDocent_Contig_15229 17 . G A 246.92 . AB=0.182927;ABP=74.6159;AC=3;AF=0.375;AN=8;AO=15;CIGAR=1X;DP=97;DPB=97;DPRA=1.82222;EPP=35.5824;EPPR=181.071;GTI=0;LEN=1;MEANALT=1;MQM=56.3333;MQMR=59.5122;NS=4;NUMALT=1;ODDS=0;PAIRED=0.266667;PAIREDR=0.54878;PAO=0;PQA=0;PQR=0;PRO=0;QA=597;QR=3298;RO=82;RPL=0;RPP=35.5824;RPPR=181.071;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=82;SRP=181.071;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:32:28,4:28:1134:4:159:-5.02436,0,-92.203 0/1:26:23,3:23:923:3:122:-3.52638,0,-75.549 0/1:24:16,8:16:632:8:316:-21.5358,0,-49.9878 0/0:15:15,0:15:609:0:0:0,-4.51545,-55.1476 dDocent_Contig_15230 36 . A G 822.227 . AB=0.0833333;ABP=39.2015;AC=5;AF=0.625;AN=8;AO=2;CIGAR=1X3M;DP=62;DPB=62;DPRA=1.84615;EPP=7.35324;EPPR=70.3259;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.612903;PAO=0;PQA=0;PQR=0;PRO=0;QA=80;QR=1180;RO=31;RPL=0;RPP=7.35324;RPPR=70.3259;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:13:8,5,0:8:309:5,0:191,0:-13.6447,0,-24.2544,-16.0529,-25.7595,-41.4292 0|1:24:16,6,2:16:622:6,2:229,80:-13.9582,0,-49.2952,-12.1802,-44.5102,-62.6945 0|1:12:7,5,0:7:249:5,0:193,0:-14.129,0,-19.1301,-16.2362,-20.6352,-36.4984 1|1:13:0,13,0:0:0:13,0:506,0:-45.8887,-3.91339,0,-45.8887,-3.91339,-45.8887 dDocent_Contig_15231 13 . C T 1383.78 . AB=0.5625;ABP=5.18177;AC=5;AF=0.625;AN=8;AO=45;CIGAR=1X;DP=73;DPB=73;DPRA=0;EPP=100.727;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1796;QR=1140;RO=28;RPL=0;RPP=100.727;RPPR=63.8115;RPR=45;RUN=1;SAF=45;SAP=100.727;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:11,7:11:450:7:286:-20.6963,0,-35.4372 0/1:21:3,18:3:122:18:729:-59.6133,0,-5.05086 1/1:9:0,9:0:0:9:347:-31.5835,-2.70927,0 0/1:25:14,11:14:568:11:434:-31.8822,0,-43.9364 dDocent_Contig_15233 11 . A G 36.173 . AB=0.146341;ABP=47.552;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=110;DPB=110;DPRA=1.78261;EPP=16.0391;EPPR=228.843;GTI=0;LEN=1;MEANALT=1;MQM=32.5;MQMR=56.6058;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.701923;PAO=0;PQA=0;PQR=0;PRO=0;QA=242;QR=4088;RO=104;RPL=0;RPP=16.0391;RPPR=228.843;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=104;SRP=228.843;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:41:35,6:35:1378:6:242:-5.01513,0,-111.539 0/0:29:29,0:29:1127:0:0:0,-8.72987,-99.677 0/0:21:21,0:21:840:0:0:0,-6.32163,-74.7355 0/0:19:19,0:19:743:0:0:0,-5.71957,-67.1618 dDocent_Contig_15234 193 . G T 98.6031 . AB=0.4;ABP=4.31318;AC=3;AF=0.375;AN=8;AO=6;CIGAR=1X;DP=21;DPB=21;DPRA=0.833333;EPP=16.0391;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=201;QR=573;RO=15;RPL=6;RPP=16.0391;RPPR=35.5824;RPR=0;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=35.5824;SRR=15;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:4:1,3:1:39:3:117:-9.70626,0,-2.69244 0/1:3:1,2:1:33:2:46:-3.46527,0,-2.39604 0/1:8:7,1:7:268:1:38:-1.38903,0,-22.0744 0/0:6:6,0:6:233:0:0:0,-1.80618,-21.3398 dDocent_Contig_15235 26 . C T 356.072 . AB=0.2;ABP=10.8276;AC=6;AF=0.75;AN=8;AO=2;CIGAR=1X2M;DP=30;DPB=30;DPRA=5;EPP=7.35324;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=640;RO=16;RPL=0;RPP=7.35324;RPPR=37.7539;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:10:8,0,2:8:323:0,2:0,81:-4.67543,-7.08367,-33.7101,0,-27.0307,-26.4287 0|1:16:8,8,0:8:317:8,0:317,0:-24.0794,0,-24.0796,-26.4876,-26.4879,-52.5797 1|1:1:0,0,0:0:0:0,0:0,0:0,0,0,0,0,0 1|1:3:0,3,0:0:0:3,0:108,0:-10.0717,-0.90309,0,-10.0717,-0.90309,-10.0717 dDocent_Contig_15236 9 . G T 121.126 . AB=0.141026;ABP=90.3146;AC=2;AF=0.25;AN=8;AO=13;CIGAR=1X;DP=115;DPB=115;DPRA=6.05556;EPP=31.2394;EPPR=224.5;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.8725;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=0.990196;PAO=0;PQA=0;PQR=0;PRO=0;QA=503;QR=3846;RO=102;RPL=0;RPP=31.2394;RPPR=224.5;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=102;SRP=224.5;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:31:29,2:29:1121:2:78:0,-1.92846,-93.7886 0/1:45:40,5:40:1489:5:191:-4.01231,0,-120.733 0/1:33:27,6:27:1032:6:234:-11.4971,0,-83.2108 0/0:6:6,0:6:204:0:0:0,-1.80618,-18.6854 dDocent_Contig_15238 20 . G A 66.3555 . AB=0.132075;ABP=65.3275;AC=2;AF=0.25;AN=8;AO=7;CIGAR=1X;DP=65;DPB=65;DPRA=4.41667;EPP=18.2106;EPPR=128.956;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=270;QR=2321;RO=58;RPL=0;RPP=18.2106;RPPR=128.956;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:10:10,0:10:406:0:0:0,-3.0103,-36.8995 0/1:42:36,6:36:1429:6:229:-8.32771,0,-116.211 0/1:11:10,1:10:404:1:41:-0.783237,0,-33.4087 0/0:2:2,0:2:82:0:0:0,-0.60206,-7.77968 dDocent_Contig_15239 140 . A G 626.085 . AB=0.45;ABP=3.44459;AC=4;AF=0.5;AN=8;AO=25;CIGAR=1X;DP=66;DPB=66;DPRA=0;EPP=57.2971;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.97561;PAO=0;PQA=0;PQR=0;PRO=0;QA=859;QR=1404;RO=41;RPL=0;RPP=57.2971;RPPR=92.0407;RPR=25;RUN=1;SAF=0;SAP=57.2971;SAR=25;SRF=0;SRP=92.0407;SRR=41;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:30:29,1:29:985:1:31:0,-5.93145,-85.8589 1/1:16:1,15:1:35:15:522:-43.8115,-1.31785,0 0/1:11:4,7:4:140:7:237:-18.3499,0,-9.6336 0/1:9:7,2:7:244:2:69:-3.84339,0,-19.5908 dDocent_Contig_15240 175 . T G 263.678 . AB=0.529412;ABP=3.13803;AC=1;AF=0.25;AN=4;AO=9;CIGAR=1X;DP=27;DPB=27;DPRA=1.7;EPP=22.5536;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=368;QR=727;RO=18;RPL=9;RPP=22.5536;RPPR=42.0968;RPR=0;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=42.0968;SRR=18;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:10:10,0:10:406:0:0:0,-3.0103,-36.9 0/1:17:8,9:8:321:9:368:-28.3678,0,-24.1406 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_15242 9 . G A 497.215 . AB=0.159817;ABP=223.142;AC=3;AF=0.375;AN=8;AO=35;CIGAR=1X;DP=320;DPB=320;DPRA=0.722772;EPP=79.0118;EPPR=604.63;GTI=0;LEN=1;MEANALT=1;MQM=58.4571;MQMR=58.6702;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=0;PAIREDR=0.119298;PAO=0;PQA=0;PQR=0;PRO=0;QA=1338;QR=10752;RO=285;RPL=0;RPP=79.0118;RPPR=621.88;RPR=35;RUN=1;SAF=35;SAP=79.0118;SAR=0;SRF=283;SRP=604.63;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:100:83,17:83:3149:17:650:-28.7335,0,-253.273 0/0:101:101,0:101:3774:0:0:0,-30.404,-336.275 0/1:87:74,13:74:2820:13:497:-18.8864,0,-226.675 0/1:32:27,5:27:1009:5:191:-7.49951,0,-81.3786 dDocent_Contig_15244 10 . C T 433.458 . AB=0.23913;ABP=57.3915;AC=4;AF=0.5;AN=8;AO=22;CIGAR=1X;DP=92;DPB=92;DPRA=0;EPP=50.7827;EPPR=155.013;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=855;QR=2780;RO=70;RPL=0;RPP=50.7827;RPPR=155.013;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=70;SRP=155.013;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:39:31,8:31:1240:8:295:-15.1562,0,-100.131 0/1:15:8,7:8:294:7:280:-21.0561,0,-22.285 0/1:27:23,4:23:922:4:160:-6.65511,0,-75.1564 0/1:11:8,3:8:324:3:120:-7.87636,0,-26.2179 dDocent_Contig_15245 47 . T A 364.737 . AB=0.246575;ABP=43.7328;AC=4;AF=0.5;AN=8;AO=18;CIGAR=1X;DP=73;DPB=73;DPRA=0;EPP=42.0968;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.777778;PAIREDR=0.490909;PAO=0;PQA=0;PQR=0;PRO=0;QA=698;QR=2187;RO=55;RPL=0;RPP=42.0968;RPPR=122.441;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:20,4:20:799:4:156:-7.19172,0,-65.0038 0/1:12:11,1:11:441:1:41:-0.482207,0,-36.4335 0/1:26:16,10:16:637:10:387:-27.3579,0,-49.8385 0/1:11:8,3:8:310:3:114:-7.31876,0,-24.9503 dDocent_Contig_15246 38 . C T 96.7778 . AB=0.25;ABP=16.0391;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=107;DPB=107;DPRA=1.05769;EPP=18.2106;EPPR=220.158;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=234;QR=3933;RO=100;RPL=0;RPP=18.2106;RPPR=220.158;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=100;SRP=220.158;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:31:30,1:30:1182:1:31:0,-6.23248,-103.562 0/1:24:18,6:18:700:6:203:-11.3767,0,-56.0991 0/0:34:34,0:34:1335:0:0:0,-10.235,-120.419 0/0:18:18,0:18:716:0:0:0,-5.41854,-64.7618 dDocent_Contig_15247 112 . A T 542.17 . AB=0.666667;ABP=9.52472;AC=4;AF=0.5;AN=8;AO=20;CIGAR=1X;DP=37;DPB=37;DPRA=1.20833;EPP=46.4397;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=38.45;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=780;QR=492;RO=17;RPL=0;RPP=46.4397;RPPR=39.9253;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=0;SRP=39.9253;SRR=17;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:6,6:6:196:6:234:-15.8913,0,-14.3497 0/0:8:8,0:8:232:0:0:0,-2.40824,-21.1662 0/1:15:3,12:3:64:12:468:-34.1374,0,-1.45721 1/1:2:0,2:0:0:2:78:-7.01313,-0.60206,0 dDocent_Contig_15248 12 . G A 268.927 . AB=0.357143;ABP=7.97367;AC=1;AF=0.125;AN=8;AO=10;CIGAR=1X;DP=92;DPB=92;DPRA=1.3125;EPP=24.725;EPPR=181.071;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.878049;PAO=0;PQA=0;PQR=0;PRO=0;QA=404;QR=3277;RO=82;RPL=0;RPP=24.725;RPPR=181.071;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=82;SRP=181.071;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:18,10:18:715:10:404:-28.2906,0,-56.2454 0/0:29:29,0:29:1153:0:0:0,-8.72987,-104.051 0/0:20:20,0:20:810:0:0:0,-6.0206,-73.2159 0/0:15:15,0:15:599:0:0:0,-4.51545,-54.2482 dDocent_Contig_15249 41 . C A 35.7877 . AB=0.222222;ABP=9.04217;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X;DP=36;DPB=36;DPRA=1;EPP=7.35324;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=1381;RO=34;RPL=0;RPP=7.35324;RPPR=76.8404;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:7,2:7:285:2:81:-4.97646,0,-23.3151 0/0:3:3,0:3:123:0:0:0,-0.90309,-11.4648 0/0:13:13,0:13:528:0:0:0,-3.91339,-47.8669 0/0:11:11,0:11:445:0:0:0,-3.31133,-40.4055 dDocent_Contig_15250 30 . C T 288.365 . AB=0.237288;ABP=38.3795;AC=3;AF=0.375;AN=8;AO=14;CIGAR=1X;DP=77;DPB=77;DPRA=1.09259;EPP=33.4109;EPPR=139.813;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.857143;PAIREDR=0.809524;PAO=0;PQA=0;PQR=0;PRO=0;QA=565;QR=2523;RO=63;RPL=0;RPP=33.4109;RPPR=139.813;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=63;SRP=139.813;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:18:18,0:18:728:0:0:0,-5.41854,-65.8428 0/1:24:17,7:17:680:7:286:-18.8901,0,-54.3013 0/1:16:12,4:12:467:4:157:-9.69141,0,-37.5571 0/1:19:16,3:16:648:3:122:-5.65292,0,-52.9343 dDocent_Contig_15251 83 . C T 133.054 . AB=0.333333;ABP=7.35324;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=31;DPB=31;DPRA=2.76923;EPP=16.0391;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=221;QR=844;RO=25;RPL=6;RPP=16.0391;RPPR=57.2971;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:12,6:12:392:6:221:-14.8283,0,-30.1763 0/0:6:6,0:6:209:0:0:0,-1.80618,-19.1511 0/0:7:7,0:7:243:0:0:0,-2.10721,-22.2089 ./.:.:.:.:.:.:.:. dDocent_Contig_15252 115 . T C 42.2559 . AB=0.230769;ABP=11.1951;AC=3;AF=0.5;AN=6;AO=6;CIGAR=1X;DP=21;DPB=21;DPRA=0;EPP=16.0391;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1;MQM=16;MQMR=60;NS=3;NUMALT=1;ODDS=8.67362e-19;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=208;QR=522;RO=15;RPL=0;RPP=16.0391;RPPR=35.5824;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=35.5824;SRR=15;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:6:5,1:5:174:1:35:0,-1.30648,-15.5023 0/1:13:10,3:10:348:3:104:-0.550506,0,-27.7426 1/1:2:0,2:0:0:2:69:-4.04393,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_15253 55 . G A 364.741 . AB=0.394737;ABP=6.66752;AC=3;AF=0.375;AN=8;AO=15;CIGAR=1X;DP=49;DPB=49;DPRA=1.15152;EPP=35.5824;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.941176;PAO=0;PQA=0;PQR=0;PRO=0;QA=580;QR=1319;RO=34;RPL=15;RPP=35.5824;RPPR=76.8404;RPR=0;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:16,10:16:622:10:388:-27.4502,0,-48.4917 0/1:8:5,3:5:190:3:115:-8.31679,0,-15.0582 0/0:11:11,0:11:427:0:0:0,-3.31133,-38.7821 0/1:4:2,2:2:80:2:77:-6.10502,0,-6.38767 dDocent_Contig_15254 14 . A G 509.208 . AB=0.277108;ABP=38.8265;AC=4;AF=0.5;AN=8;AO=23;CIGAR=1X;DP=83;DPB=83;DPRA=0;EPP=44.6459;EPPR=116.506;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.956522;PAIREDR=0.866667;PAO=0;PQA=0;PQR=0;PRO=0;QA=905;QR=2402;RO=60;RPL=0;RPP=52.9542;RPPR=133.299;RPR=23;RUN=1;SAF=22;SAP=44.6459;SAR=1;SRF=58;SRP=116.506;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:19,6:19:761:6:235:-13.9945,0,-61.2814 0/1:39:34,5:34:1357:5:198:-6.4556,0,-110.65 0/1:11:6,5:6:243:5:205:-15.5237,0,-18.9363 0/1:8:1,7:1:41:7:267:-21.9816,0,-1.68633 dDocent_Contig_15255 118 . T A 77.0537 . AB=0;ABP=0;AC=2;AF=0.25;AN=8;AO=2;CIGAR=1X1M1X3M16I4M1X1M;DP=20;DPB=22.6667;DPRA=0.333333;EPP=7.35324;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=78;QR=603;RO=18;RPL=0;RPP=7.35324;RPPR=42.0968;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=42.0968;SRR=18;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:7:7,0:7:236:0:0:0,-2.10721,-21.5704 0|0:10:10,0:10:333:0:0:0,-3.0103,-30.2936 1|1:2:0,2:0:0:2:78:-7.40347,-0.60206,0 0|0:1:1,0:1:34:0:0:0,-0.30103,-3.39891 dDocent_Contig_15258 11 . T C 495.786 . AB=0.5;ABP=3.0103;AC=3;AF=0.5;AN=6;AO=18;CIGAR=1X;DP=36;DPB=36;DPRA=0;EPP=42.0968;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=720;QR=703;RO=18;RPL=0;RPP=42.0968;RPPR=42.0968;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:6,4:6:239:4:162:-11.9567,0,-18.8729 0/1:12:2,10:2:75:10:395:-32.2963,0,-3.50774 0/1:14:10,4:10:389:4:163:-10.844,0,-31.1514 ./.:.:.:.:.:.:.:. dDocent_Contig_15259 92 . A T 759.729 . AB=0.414634;ABP=5.60547;AC=6;AF=0.75;AN=8;AO=29;CIGAR=1X;DP=53;DPB=53;DPRA=0;EPP=65.983;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1004;QR=812;RO=24;RPL=29;RPP=65.983;RPPR=55.1256;RPR=0;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:8,13:8:274:13:448:-34.3284,0,-18.6722 0/1:20:16,4:16:538:4:138:-6.7398,0,-42.7188 1/1:7:0,7:0:0:7:243:-22.2088,-2.10721,0 1/1:5:0,5:0:0:5:175:-16.0937,-1.50515,0 dDocent_Contig_15260 38 . G C 35.7866 . AB=0.25;ABP=7.35324;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X;DP=56;DPB=56;DPRA=0.5;EPP=7.35324;EPPR=120.27;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.777778;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=2179;RO=54;RPL=0;RPP=7.35324;RPPR=120.27;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:23:23,0:23:925:0:0:0,-6.92369,-83.554 0/0:19:19,0:19:764:0:0:0,-5.71957,-69.0824 0/0:6:6,0:6:246:0:0:0,-1.80618,-22.5201 0/1:8:6,2:6:244:2:81:-5.27749,0,-19.9306 dDocent_Contig_15261 21 . G A 134.1 . AB=0.333333;ABP=7.35324;AC=2;AF=0.25;AN=8;AO=6;CIGAR=1X;DP=70;DPB=70;DPRA=0.346154;EPP=16.0391;EPPR=141.985;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=238;QR=2533;RO=64;RPL=0;RPP=16.0391;RPPR=141.985;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=64;SRP=141.985;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:44:44,0:44:1741:0:0:0,-13.2453,-156.917 0/1:13:8,5:8:311:5:198:-14.2836,0,-24.4315 0/1:5:4,1:4:163:1:40:-2.49053,0,-13.5533 0/0:8:8,0:8:318:0:0:0,-2.40824,-28.9848 dDocent_Contig_15262 63 . A G 420.935 . AB=0.571429;ABP=4.25114;AC=3;AF=0.375;AN=8;AO=16;CIGAR=1X;DP=38;DPB=38;DPRA=0.933333;EPP=37.7539;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=609;QR=868;RO=22;RPL=16;RPP=37.7539;RPPR=50.7827;RPR=0;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:10:10,0:10:400:0:0:0,-3.0103,-36.3594 0/1:4:1,3:1:41:3:122:-10.1684,0,-2.89045 0/1:14:5,9:5:201:9:337:-26.4567,0,-14.2567 0/1:10:6,4:6:226:4:150:-10.8526,0,-17.6894 dDocent_Contig_15263 198 . A G 31.0911 . AB=0.363636;ABP=6.56362;AC=4;AF=0.5;AN=8;AO=9;CIGAR=1X3M2X2M12I3M;DP=26;DPB=35.8182;DPRA=4;EPP=22.5536;EPPR=29.068;GTI=0;LEN=1;MEANALT=1.66667;MQM=16.7778;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=151;QR=428;RO=12;RPL=9;RPP=22.5536;RPPR=29.068;RPR=0;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=29.068;SRR=12;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:10:7,3:7:249:3:48:-0.642185,0,-19.7453 0|1:12:5,5:5:179:5:87:-3.33902,0,-13.098 1|1:2:0,1:0:0:1:16:-1.05434,-0.30103,0 0|0:2:0,0:0:0:0:0:0,0,0 dDocent_Contig_15265 74 . C T 57.4224 . AB=0.16;ABP=28.1125;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=90;DPB=90;DPRA=1.5;EPP=13.8677;EPPR=187.585;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=180;QR=3311;RO=85;RPL=5;RPP=13.8677;RPPR=187.585;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=85;SRP=187.585;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:23:23,0:23:895:0:0:0,-6.92369,-80.8573 0/0:29:28,1:28:1068:1:18:0,-6.9299,-94.6117 0/1:25:21,4:21:836:4:162:-7.44121,0,-68.03 0/0:13:13,0:13:512:0:0:0,-3.91339,-46.426 dDocent_Contig_15266 117 . G A 190.829 . AB=0.5;ABP=3.0103;AC=3;AF=0.5;AN=6;AO=2;CIGAR=1X4M;DP=41;DPB=41;DPRA=0.363636;EPP=7.35324;EPPR=44.2683;GTI=0;LEN=1;MEANALT=2;MQM=32;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=45;QR=627;RO=19;RPL=0;RPP=7.35324;RPPR=44.2683;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=44.2683;SRR=19;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:11:10,0,0,1,0:10:328:0,0,1,0:0,0,37,0:0,-3.0103,-29.5681,-3.0103,-29.5681,-29.5681,-0.652644,-27.482,-27.482,-27.1809,-3.0103,-29.5681,-29.5681,-27.482,-29.5681 0|1:26:9,6,7,3,0:9:299:6,7,3,0:200,234,111,0:-13.5096,0,-22.4246,-1.90058,-9.91416,-24.0063,-9.94592,-17.9588,-19.8463,-33.2557,-16.2188,-24.2308,-26.1135,-34.1588,-40.4302 1|1:4:0,2,0,0,2:0:0:2,0,0,2:69,0,0,45:-9.07141,-3.39852,-2.79646,-9.07141,-3.39852,-9.07141,-9.07141,-3.39852,-9.07141,-9.07141,-5.9506,0,-5.9506,-5.9506,-5.34854 .:.:.:.:.:.:.:. dDocent_Contig_15267 8 . T G 61.9988 . AB=0.151515;ABP=37.8197;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=108;DPB=108;DPRA=1.32;EPP=13.8677;EPPR=226.672;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=194;QR=3947;RO=103;RPL=0;RPP=13.8677;RPPR=226.672;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=103;SRP=226.672;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:47:47,0:47:1811:0:0:0,-14.1484,-163.242 0/1:33:28,5:28:1064:5:194:-7.89885,0,-86.1287 0/0:15:15,0:15:576:0:0:0,-4.51545,-52.1821 0/0:13:13,0:13:496:0:0:0,-3.91339,-44.9844 dDocent_Contig_15268 43 . G A 160.901 . AB=0.35;ABP=6.91895;AC=2;AF=0.25;AN=8;AO=8;CIGAR=1X;DP=42;DPB=42;DPRA=1.66667;EPP=20.3821;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=316;QR=1327;RO=34;RPL=0;RPP=20.3821;RPPR=76.8404;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:7:7,0:7:281:0:0:0,-2.10721,-25.6617 0/1:14:10,4:10:376:4:159:-10.477,0,-29.9706 0/0:15:14,1:14:549:1:41:0,-0.420883,-45.6567 0/1:6:3,3:3:121:3:116:-9.0106,0,-9.47402 dDocent_Contig_15269 98 . N C 421.812 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=13;CIGAR=2X;DP=13;DPB=13;DPRA=0;EPP=31.2394;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=1.69407e-21;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=452;QR=0;RO=0;RPL=13;RPP=31.2394;RPPR=0;RPR=0;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:11:0,11:0:0:11:383:-34.805,-3.31133,0 1|1:1:0,1:0:0:1:34:-3.39891,-0.30103,0 .:.:.:.:.:.:.:. 1|1:1:0,1:0:0:1:35:-3.49863,-0.30103,0 dDocent_Contig_15270 12 . C A 226.096 . AB=0.206897;ABP=46.29;AC=2;AF=0.25;AN=8;AO=12;CIGAR=1X;DP=84;DPB=84;DPRA=2.23077;EPP=29.068;EPPR=157.185;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.916667;PAIREDR=0.788732;PAO=0;PQA=0;PQR=0;PRO=0;QA=473;QR=2845;RO=71;RPL=0;RPP=29.068;RPPR=157.185;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=71;SRP=157.185;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:22,7:22:892:7:277:-16.4219,0,-71.7331 0/0:19:19,0:19:770:0:0:0,-5.71957,-69.6201 0/1:28:23,5:23:929:5:196:-9.58563,0,-75.4843 0/0:7:7,0:7:254:0:0:0,-2.10721,-23.2008 dDocent_Contig_15271 114 . G A 296.073 . AB=0.392857;ABP=5.80219;AC=4;AF=0.5;AN=8;AO=13;CIGAR=1X;DP=52;DPB=52;DPRA=0.454545;EPP=31.2394;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.974359;PAO=0;PQA=0;PQR=0;PRO=0;QA=449;QR=1348;RO=39;RPL=0;RPP=31.2394;RPPR=87.6977;RPR=13;RUN=1;SAF=0;SAP=31.2394;SAR=13;SRF=0;SRP=87.6977;SRR=39;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:12,3:12:416:3:105:-5.28071,0,-33.2572 0/0:22:22,0:22:764:0:0:0,-6.62266,-69.0813 0/1:13:5,8:5:168:8:275:-21.1715,0,-11.5376 1/1:2:0,2:0:0:2:69:-6.55266,-0.60206,0 dDocent_Contig_15272 81 . G A 172.762 . AB=0;ABP=0;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=89;DPB=89;DPRA=2.11765;EPP=16.0391;EPPR=183.243;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=225;QR=3185;RO=83;RPL=6;RPP=16.0391;RPPR=183.243;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=83;SRP=183.243;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:67:66,1:66:2529:1:39:0,-16.2724,-223.909 ./.:.:.:.:.:.:.:. 1/1:5:0,5:0:0:5:186:-17.1,-1.50515,0 0/0:17:17,0:17:656:0:0:0,-5.11751,-59.3755 dDocent_Contig_15273 7 . A G 68.0951 . AB=0.1875;ABP=30.1537;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=76;DPB=76;DPRA=4.06667;EPP=20.3821;EPPR=133.81;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.7647;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.970588;PAO=0;PQA=0;PQR=0;PRO=0;QA=275;QR=2586;RO=68;RPL=0;RPP=20.3821;RPPR=150.67;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=66;SRP=133.81;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:29:27,2:27:1022:2:77:0,-1.42073,-84.979 0/1:32:26,6:26:993:6:198:-8.50842,0,-80.0474 0/0:9:9,0:9:342:0:0:0,-2.70927,-31.1203 0/0:6:6,0:6:229:0:0:0,-1.80618,-20.9757 dDocent_Contig_15274 9 . G A 232.2 . AB=0.4;ABP=5.18177;AC=3;AF=0.375;AN=8;AO=10;CIGAR=1X;DP=41;DPB=41;DPRA=0.520833;EPP=24.725;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.8;PAIREDR=0.741935;PAO=0;PQA=0;PQR=0;PRO=0;QA=389;QR=1183;RO=31;RPL=0;RPP=24.725;RPPR=70.3259;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:10,4:10:384:4:156:-10.2029,0,-30.7015 0/1:7:3,4:3:116:4:156:-12.3101,0,-8.71049 0/0:16:16,0:16:608:0:0:0,-4.81648,-55.0543 0/1:4:2,2:2:75:2:77:-6.10502,0,-5.91622 dDocent_Contig_15276 11 . T C 237.879 . AB=0.214286;ABP=42.7172;AC=2;AF=0.25;AN=8;AO=15;CIGAR=1X;DP=124;DPB=124;DPRA=0;EPP=35.5824;EPPR=239.701;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=602;QR=4370;RO=109;RPL=0;RPP=35.5824;RPPR=239.701;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=109;SRP=239.701;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:35:34,1:34:1359:1:40:0,-6.54037,-118.567 0/1:42:35,7:35:1411:7:276:-12.5652,0,-114.597 0/0:33:31,2:31:1244:2:81:0,-2.24826,-104.545 0/1:14:9,5:9:356:5:205:-14.6206,0,-28.1841 dDocent_Contig_15277 10 . A G 172.347 . AB=0.454545;ABP=3.20771;AC=3;AF=0.375;AN=8;AO=6;CIGAR=1X;DP=35;DPB=35;DPRA=0.521739;EPP=16.0391;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=236;QR=1148;RO=29;RPL=0;RPP=16.0391;RPPR=65.983;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:16:16,0:16:630:0:0:0,-4.81648,-57.0306 0/1:11:6,5:6:237:5:204:-15.4327,0,-18.3881 1/1:1:0,1:0:0:1:32:-3.19931,-0.30103,0 0/0:7:7,0:7:281:0:0:0,-2.10721,-25.662 dDocent_Contig_15279 125 . C T 219.08 . AB=0.8;ABP=10.8276;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=25;DPB=25;DPRA=1.33333;EPP=20.3821;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=290;QR=646;RO=17;RPL=0;RPP=20.3821;RPPR=39.9253;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=39.9253;SRR=17;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:2,8:2:78:8:290:-23.4302,0,-4.39317 0/0:7:7,0:7:265:0:0:0,-2.10721,-24.2102 0/0:8:8,0:8:303:0:0:0,-2.40824,-27.6276 ./.:.:.:.:.:.:.:. dDocent_Contig_15280 37 . T G 1394.75 . AB=0.379562;ABP=20.2711;AC=4;AF=0.5;AN=8;AO=52;CIGAR=1X;DP=137;DPB=137;DPRA=0;EPP=115.927;EPPR=187.585;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2075;QR=3428;RO=85;RPL=0;RPP=115.927;RPPR=187.585;RPR=52;RUN=1;SAF=52;SAP=115.927;SAR=0;SRF=85;SRP=187.585;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:47:37,10:37:1499:10:396:-21.8495,0,-121.002 0/1:31:11,20:11:434:20:803:-63.2556,0,-30.079 0/1:24:20,4:20:804:4:150:-6.63772,0,-65.4517 0/1:35:17,18:17:691:18:726:-55.1297,0,-51.9826 dDocent_Contig_15281 59 . C T 155.378 . AB=0.318182;ABP=9.32731;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=39;DPB=39;DPRA=0.647059;EPP=18.2106;EPPR=56.2114;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.875;PAO=0;PQA=0;PQR=0;PRO=0;QA=276;QR=1271;RO=32;RPL=7;RPP=18.2106;RPPR=72.4974;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=30;SRP=56.2114;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:17:17,0:17:678:0:0:0,-5.11751,-61.3471 0/1:16:10,6:10:400:6:235:-16.7035,0,-31.5411 0/1:6:5,1:5:193:1:41:-2.28839,0,-15.9314 ./.:.:.:.:.:.:.:. dDocent_Contig_15282 74 . T C 352.205 . AB=0.518519;ABP=3.09072;AC=2;AF=0.333333;AN=6;AO=14;CIGAR=1X;DP=41;DPB=41;DPRA=0.964286;EPP=33.4109;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=512;QR=1073;RO=27;RPL=14;RPP=33.4109;RPPR=61.6401;RPR=0;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:14:14,0:14:559:0:0:0,-4.21442,-50.6538 0/1:21:12,9:12:474:9:312:-22.0852,0,-36.6873 0/1:6:1,5:1:40:5:200:-16.5734,0,-2.1895 ./.:.:.:.:.:.:.:. dDocent_Contig_15283 37 . A G 133.692 . AB=0.454545;ABP=3.20771;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X1M1D1X;DP=39;DPB=37.75;DPRA=1.17857;EPP=13.8677;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.470588;PAO=0;PQA=0;PQR=0;PRO=0;QA=200;QR=1341;RO=34;RPL=0;RPP=13.8677;RPPR=76.8404;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:9:9,0:9:345:0:0:0,-2.70927,-31.4015 0|0:11:11,0:11:446:0:0:0,-3.31133,-40.4962 0|1:11:6,5:6:241:5:200:-15.0682,0,-18.7556 0|0:8:8,0:8:309:0:0:0,-2.40824,-28.1709 dDocent_Contig_15284 86 . G A 197.027 . AB=0.375;ABP=6.26751;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X;DP=43;DPB=43;DPRA=3.78947;EPP=22.5536;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=311;QR=1177;RO=34;RPL=9;RPP=22.5536;RPPR=76.8404;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:15,9:15:527:9:311:-21.1001,0,-40.5364 0/0:15:15,0:15:508:0:0:0,-4.51545,-46.0377 0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672 0/0:2:2,0:2:70:0:0:0,-0.60206,-6.64733 dDocent_Contig_15285 14 . A T 661.765 . AB=0.278689;ABP=28.9612;AC=3;AF=0.375;AN=8;AO=17;CIGAR=1M1D1M1X16M;DP=61;DPB=59.35;DPRA=0;EPP=39.9253;EPPR=48.6112;GTI=0;LEN=1;MEANALT=2.75;MQM=60;MQMR=60;NS=4;NUMALT=4;ODDS=1.38778e-17;PAIRED=1;PAIREDR=0.952381;PAO=0;PQA=0;PQR=0;PRO=0;QA=677;QR=828;RO=21;RPL=0;RPP=39.9253;RPPR=48.6112;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:15:5,4,4,2,0:5:199:4,4,2,0:158,163,78,0:-11.9478,-0.454399,-15.6348,0,-3.38739,-15.1842,-7.04357,-10.4296,-9.97792,-22.8265,-13.4529,-16.839,-16.3883,-23.4285,-29.8388 0|1:14:7,0,6,0,1:7:279:0,6,0,1:0,235,0,38:-17.2241,-19.3313,-42.3119,0,-22.9925,-21.1863,-19.3313,-42.3119,-22.9925,-42.3119,-16.2164,-39.1965,-19.8783,-39.1965,-38.8955 0|1:18:8,0,5,4,1:8:310:0,5,4,1:0,201,163,40:-14.154,-16.5622,-42.0214,0,-25.4552,-23.95,-3.11259,-28.571,-12.0022,-27.3669,-13.2676,-38.7261,-22.1596,-25.2754,-38.4251 0|0:14:1,0,2,6,5:1:40:0,2,6,5:0,78,219,194:-30.2119,-30.5129,-33.8096,-24.0989,-27.3961,-26.794,-12.6383,-15.9348,-9.52301,-14.1286,-14.5684,-17.8667,-11.4505,0,-16.3615 dDocent_Contig_15286 65 . T G 230.874 . AB=0.344828;ABP=9.07545;AC=3;AF=0.375;AN=8;AO=10;CIGAR=1X;DP=42;DPB=42;DPRA=0.74359;EPP=24.725;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=393;QR=1281;RO=32;RPL=10;RPP=24.725;RPPR=72.4974;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:13:13,0:13:522:0:0:0,-3.91339,-47.3254 0/1:3:2,1:2:70:1:41:-3.19148,0,-5.74424 0/1:19:11,8:11:447:8:318:-23.2665,0,-34.8659 0/1:7:6,1:6:242:1:34:-1.2917,0,-20.0497 dDocent_Contig_15287 101 . N A 206.074 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=6;CIGAR=1X4I3X2I4X2I2M;DP=6;DPB=10.8;DPRA=0;EPP=16.0391;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=1.69407e-21;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=211;QR=0;RO=0;RPL=0;RPP=16.0391;RPPR=0;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. 1|1:1:0,1:0:0:1:30:-2.99957,-0.30103,0 1|1:3:0,3:0:0:3:109:-10.1681,-0.90309,0 1|1:2:0,2:0:0:2:72:-6.83664,-0.60206,0 dDocent_Contig_15288 39 . G C 162.932 . AB=0.307692;ABP=7.18621;AC=3;AF=0.5;AN=6;AO=6;CIGAR=1X;DP=22;DPB=22;DPRA=1.07143;EPP=16.0391;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=233;QR=639;RO=16;RPL=0;RPP=16.0391;RPPR=37.7539;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:7:7,0:7:276:0:0:0,-2.10721,-25.2076 0/1:13:9,4:9:363:4:154:-10.318,0,-29.1211 1/1:2:0,2:0:0:2:79:-7.49763,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_15289 133 . G A 51.975 . AB=0.259259;ABP=16.6021;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=78;DPB=78;DPRA=1.16667;EPP=20.3821;EPPR=146.452;GTI=0;LEN=1;MEANALT=1;MQM=23.875;MQMR=36.8286;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.414286;PAO=0;PQA=0;PQR=0;PRO=0;QA=270;QR=2380;RO=70;RPL=0;RPP=20.3821;RPPR=155.013;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=1;SRP=146.452;SRR=69;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:20,7:20:663:7:241:-6.59542,0,-40.4827 0/0:16:16,0:16:548:0:0:0,-4.81648,-30.8373 0/0:15:14,1:14:488:1:29:0,-2.02756,-22.7261 0/0:20:20,0:20:681:0:0:0,-6.0206,-56.9283 dDocent_Contig_15290 62 . A G 39.7594 . AB=0.138889;ABP=43.7857;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X;DP=100;DPB=100;DPRA=0;EPP=22.5536;EPPR=198.443;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.777778;PAIREDR=0.722222;PAO=0;PQA=0;PQR=0;PRO=0;QA=319;QR=3155;RO=90;RPL=7;RPP=9.04217;RPPR=37.8504;RPR=2;RUN=1;SAF=7;SAP=9.04217;SAR=2;SRF=64;SRP=37.8504;SRR=26;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:30,5:30:1060:5:177:-5.37357,0,-84.8052 0/0:15:14,1:14:496:1:35:0,-1.01682,-41.4748 0/0:34:32,2:32:1099:2:70:0,-3.58762,-92.5615 0/0:15:14,1:14:500:1:37:0,-0.817621,-41.6374 dDocent_Contig_15292 33 . T A 1708.19 . AB=0.091954;ABP=128.831;AC=2;AF=0.25;AN=8;AO=9;CIGAR=1X2M1I8M;DP=103;DPB=109.091;DPRA=0;EPP=22.5536;EPPR=79.0118;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=356;QR=1384;RO=35;RPL=0;RPP=22.5536;RPPR=79.0118;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:64:22,7,35:22:874:7,35:282,1340:-103.316,-86.6917,-156.546,0,-48.7068,-61.4155 0|0:15:4,0,11:4:157:0,11:0,442:-35.6206,-36.8247,-49.7343,0,-13.3042,-9.99284 0|0:23:9,1,12:9:353:1,12:37,444:-33.5817,-33.2642,-62.0012,0,-26.0072,-25.4197 1|1:1:0,1,0:0:0:1,0:37,0:-3.69783,-0.30103,0,-3.69783,-0.30103,-3.69783 dDocent_Contig_15293 54 . C A 50.2237 . AB=0.137931;ABP=36.0317;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=56;DPB=56;DPRA=3.22222;EPP=11.6962;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=164;QR=2035;RO=52;RPL=4;RPP=11.6962;RPPR=115.927;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:25,4:25:972:4:164:-6.42003,0,-79.0516 0/0:2:2,0:2:80:0:0:0,-0.60206,-7.59157 0/0:7:7,0:7:263:0:0:0,-2.10721,-24.0211 0/0:18:18,0:18:720:0:0:0,-5.41854,-65.1276 dDocent_Contig_15294 54 . A T 146.594 . AB=0.269231;ABP=15.0369;AC=2;AF=0.25;AN=8;AO=7;CIGAR=1X;DP=62;DPB=62;DPRA=0.722222;EPP=18.2106;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=279;QR=2216;RO=55;RPL=7;RPP=18.2106;RPPR=122.441;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:14:14,0:14:565:0:0:0,-4.21442,-51.1926 0/1:15:10,5:10:400:5:197:-13.5886,0,-31.843 0/0:22:22,0:22:883:0:0:0,-6.62266,-79.7761 0/1:11:9,2:9:368:2:82:-4.46835,0,-30.174 dDocent_Contig_15295 13 . G A 795.96 . AB=0.288288;ABP=46.2246;AC=2;AF=0.25;AN=8;AO=32;CIGAR=1X;DP=123;DPB=123;DPRA=9.25;EPP=72.4974;EPPR=200.614;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.875;PAIREDR=0.923077;PAO=0;PQA=0;PQR=0;PRO=0;QA=1286;QR=3659;RO=91;RPL=0;RPP=72.4974;RPPR=200.614;RPR=32;RUN=1;SAF=32;SAP=72.4974;SAR=0;SRF=91;SRP=200.614;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:59:46,13:46:1845:13:524:-29.7465,0,-148.497 0/1:52:33,19:33:1329:19:762:-53.2473,0,-104.216 0/0:9:9,0:9:365:0:0:0,-2.70927,-33.2149 0/0:3:3,0:3:120:0:0:0,-0.90309,-11.1873 dDocent_Contig_15297 42 . T C 1146.65 . AB=0.465909;ABP=3.89863;AC=4;AF=0.5;AN=8;AO=41;CIGAR=1X;DP=88;DPB=88;DPRA=0;EPP=83.5666;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1634;QR=1835;RO=47;RPL=1;RPP=83.5666;RPPR=105.07;RPR=40;RUN=1;SAF=41;SAP=92.0407;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:38:13,25:13:515:25:985:-77.5092,0,-35.2593 0/1:23:18,5:18:718:5:199:-11.3643,0,-58.0249 0/1:21:11,10:11:400:10:409:-30.8489,0,-30.0119 0/1:6:5,1:5:202:1:41:-2.28839,0,-16.7559 dDocent_Contig_15298 8 . T A 482.935 . AB=0.5;ABP=3.0103;AC=5;AF=0.625;AN=8;AO=15;CIGAR=1X;DP=27;DPB=27;DPRA=1.16667;EPP=35.5824;EPPR=29.068;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=580;QR=455;RO=12;RPL=0;RPP=35.5824;RPPR=29.068;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=12;SRP=29.068;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:7:0,7:0:0:7:273:-24.938,-2.10721,0 0/1:12:6,6:6:227:6:233:-17.7277,0,-17.1808 1/1:2:0,2:0:0:2:74:-7.02543,-0.60206,0 0/0:6:6,0:6:228:0:0:0,-1.80618,-20.8842 dDocent_Contig_15299 127 . C T 673.233 . AB=0.421053;ABP=6.09608;AC=5;AF=0.625;AN=8;AO=24;CIGAR=1X4M;DP=57;DPB=57;DPRA=0;EPP=55.1256;EPPR=48.6112;GTI=0;LEN=1;MEANALT=2;MQM=58.5417;MQMR=60;NS=4;NUMALT=2;ODDS=6.93889e-18;PAIRED=0.0416667;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=808;QR=714;RO=21;RPL=0;RPP=55.1256;RPPR=48.6112;RPR=24;RUN=1;SAF=0;SAP=55.1256;SAR=24;SRF=0;SRP=48.6112;SRR=21;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:20:9,4,6:9:312:4,6:135,208:-14.185,-5.96523,-30.1231,0,-14.4384,-23.5614 1|1:20:0,6,14:0:0:6,14:190,460:-52.4057,-37.4985,-35.6923,-15.2225,0,-11.0081 0|1:8:5,1,2:5:173:1,2:35,70:-4.19032,-2.84774,-16.603,0,-11.2075,-13.4538 0|1:9:7,0,2:7:229:0,2:0,70:-3.93813,-6.04534,-24.5244,0,-18.8239,-18.2218 dDocent_Contig_15300 12 . T G 383.01 . AB=0.6;ABP=3.87889;AC=6;AF=0.75;AN=8;AO=6;CIGAR=1X2M1X6M;DP=52;DPB=52;DPRA=2.5;EPP=3.0103;EPPR=53.2759;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=4;NUMALT=4;ODDS=0;PAIRED=0;PAIREDR=0.703704;PAO=0;PQA=0;PQR=0;PRO=0;QA=234;QR=1053;RO=27;RPL=0;RPP=16.0391;RPPR=61.6401;RPR=6;RUN=1;SAF=3;SAP=3.0103;SAR=3;SRF=26;SRP=53.2759;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:10:1,0,2,1,6:1:40:0,2,1,6:0,77,40,234:-21.9503,-22.2513,-25.5474,-15.9304,-19.2265,-18.6244,-18.955,-22.2513,-15.9304,-21.9503,-3.01739,-6.31495,0,-3.01739,-4.50877 0|1:20:15,0,2,2,0:15:586:0,2,2,0:0,80,81,0:-2.16834,-6.68378,-54.8519,-0.0922955,-48.2609,-47.6589,0,-48.1714,-41.5801,-47.5693,-6.68378,-54.8519,-48.2609,-48.1714,-54.8519 1|1:4:0,0,0,3,0:0:0:0,0,3,0:0,0,118,0:-10.6784,-10.6784,-10.6784,-10.6784,-10.6784,-10.6784,-0.90309,-0.90309,-0.90309,0,-10.6784,-10.6784,-10.6784,-0.90309,-10.6784 0|1:18:11,4,0,3,0:11:427:4,0,3,0:148,0,116,0:-8.7636,0,-33.8792,-12.0749,-35.0833,-47.1639,-2.54144,-25.5575,-37.6372,-36.7341,-12.0749,-35.0833,-47.1639,-37.6372,-47.1639 dDocent_Contig_15301 36 . A G 789.628 . AB=0.352941;ABP=6.20364;AC=6;AF=0.75;AN=8;AO=25;CIGAR=1X;DP=37;DPB=37;DPRA=0;EPP=57.2971;EPPR=29.068;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1001;QR=474;RO=12;RPL=0;RPP=57.2971;RPPR=29.068;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=12;SRP=29.068;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:5:0,5:0:0:5:196:-18.0122,-1.50515,0 1/1:15:1,14:1:41:14:569:-47.4575,-0.420883,0 0/1:10:6,4:6:235:4:156:-11.4059,0,-18.507 0/1:7:5,2:5:198:2:80:-5.48458,0,-16.0897 dDocent_Contig_15302 37 . G A 141.545 . AB=0.5;ABP=3.0103;AC=2;AF=0.25;AN=8;AO=8;CIGAR=1X;DP=31;DPB=31;DPRA=1.06667;EPP=20.3821;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=242;QR=766;RO=23;RPL=0;RPP=20.3821;RPPR=52.9542;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:6:6,0:6:205:0:0:0,-1.80618,-18.7854 0/1:5:4,1:4:120:1:33:-1.79398,0,-9.59165 0/0:9:9,0:9:306:0:0:0,-2.70927,-27.871 0/1:11:4,7:4:135:7:209:-15.7907,0,-9.17225 dDocent_Contig_15303 95 . C A 999.216 . AB=0.735849;ABP=28.6173;AC=2;AF=0.25;AN=8;AO=39;CIGAR=1X;DP=71;DPB=71;DPRA=2.94444;EPP=87.6977;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1308;QR=1094;RO=32;RPL=39;RPP=87.6977;RPPR=72.4974;RPR=0;RUN=1;SAF=39;SAP=87.6977;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:15:15,0:15:514:0:0:0,-4.51545,-46.5862 0/1:45:13,32:13:446:32:1072:-83.2346,0,-26.9226 0/0:3:3,0:3:99:0:0:0,-0.90309,-9.2374 0/1:8:1,7:1:35:7:236:-19.1621,0,-1.09039 dDocent_Contig_15304 15 . C T 173.126 . AB=0.368421;ABP=5.8675;AC=2;AF=0.25;AN=8;AO=7;CIGAR=1X;DP=36;DPB=36;DPRA=1.11765;EPP=18.2106;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=0.714286;PAIREDR=0.827586;PAO=0;PQA=0;PQR=0;PRO=0;QA=285;QR=1182;RO=29;RPL=0;RPP=18.2106;RPPR=65.983;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:13:13,0:13:531:0:0:0,-3.91339,-48.1364 0/1:9:4,5:4:163:5:204:-16.0348,0,-12.3492 0/1:10:8,2:8:324:2:81:-4.67543,0,-26.5185 0/0:4:4,0:4:164:0:0:0,-1.20412,-15.1499 dDocent_Contig_15307 54 . C T 339.05 . AB=0.271186;ABP=29.8409;AC=4;AF=0.5;AN=8;AO=16;CIGAR=1M1D1X;DP=59;DPB=53.6667;DPRA=0;EPP=37.7539;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=0.6875;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=639;QR=1686;RO=42;RPL=16;RPP=37.7539;RPPR=94.2121;RPR=0;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:19:16,3:16:641:3:122:-5.65292,0,-52.3053 0|1:18:16,2:16:643:2:82:-2.36114,0,-52.7867 0|1:12:7,5:7:282:5:196:-14.3999,0,-22.1406 0|1:10:3,6:3:120:6:239:-18.8442,0,-8.13858 dDocent_Contig_15309 64 . T A 548.81 . AB=0.349206;ABP=15.4532;AC=5;AF=0.625;AN=8;AO=24;CIGAR=1X;DP=65;DPB=65;DPRA=0;EPP=55.1256;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.541667;PAIREDR=0.853659;PAO=0;PQA=0;PQR=0;PRO=0;QA=865;QR=1467;RO=41;RPL=24;RPP=55.1256;RPPR=92.0407;RPR=0;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:21,7:21:764:7:259:-15.2373,0,-60.6578 0/1:12:6,6:6:205:6:216:-16.1762,0,-15.17 0/1:23:14,9:14:498:9:320:-22.2181,0,-38.2292 1/1:2:0,2:0:0:2:70:-6.64712,-0.60206,0 dDocent_Contig_15310 35 . C G 120.624 . AB=0.184211;ABP=35.9253;AC=2;AF=0.25;AN=8;AO=7;CIGAR=1X;DP=60;DPB=60;DPRA=1.72727;EPP=18.2106;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.857143;PAIREDR=0.924528;PAO=0;PQA=0;PQR=0;PRO=0;QA=275;QR=2083;RO=53;RPL=0;RPP=18.2106;RPPR=118.098;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:22,6:22:872:6:239:-13.4562,0,-70.3589 0/1:10:9,1:9:364:1:36:-0.587975,0,-30.1145 0/0:13:13,0:13:493:0:0:0,-3.91339,-44.7037 0/0:9:9,0:9:354:0:0:0,-2.70927,-32.2207 dDocent_Contig_15312 31 . T A 202.454 . AB=0.181818;ABP=22.3561;AC=4;AF=0.5;AN=8;AO=5;CIGAR=3X;DP=90;DPB=90;DPRA=0.114428;EPP=13.8677;EPPR=181.071;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=58.8293;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.926829;PAO=0;PQA=0;PQR=0;PRO=0;QA=201;QR=3271;RO=82;RPL=0;RPP=13.8677;RPPR=181.071;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=82;SRP=181.071;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:67:67,0,0:67:2678:0,0:0,0:0,-20.169,-240.347,-20.169,-240.347,-240.347 1|1:1:0,1,0:0:0:1,0:40,0:-3.99568,-0.30103,0,-3.99568,-0.30103,-3.99568 1|0:4:0,1,3:0:0:1,3:39,122:-13.6712,-10.4694,-10.1684,-3.59553,0,-2.69244 0|1:18:15,3,0:15:593:3,0:122,0:-5.95395,0,-48.2901,-10.4694,-49.1932,-59.2584 dDocent_Contig_15313 46 . T C 86.7865 . AB=0.307692;ABP=7.18621;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=32;DPB=32;DPRA=1.36842;EPP=3.0103;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=156;QR=1111;RO=28;RPL=0;RPP=11.6962;RPPR=63.8115;RPR=4;RUN=1;SAF=2;SAP=3.0103;SAR=2;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:12:12,0:12:464:0:0:0,-3.61236,-42.1051 ./.:.:.:.:.:.:.:. 0/0:7:7,0:7:283:0:0:0,-2.10721,-25.8434 0/1:13:9,4:9:364:4:156:-10.5025,0,-29.2105 dDocent_Contig_15314 123 . A T 68.1437 . AB=0.119048;ABP=108.895;AC=1;AF=0.125;AN=8;AO=14;CIGAR=2X1M1X1M1X;DP=147;DPB=147;DPRA=0;EPP=33.4109;EPPR=209.637;GTI=0;LEN=1;MEANALT=3;MQM=25;MQMR=50.9903;NS=4;NUMALT=3;ODDS=1.38778e-17;PAIRED=0;PAIREDR=0.174757;PAO=0;PQA=0;PQR=0;PRO=0;QA=528;QR=3411;RO=103;RPL=0;RPP=33.4109;RPPR=226.672;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=2;SRP=209.637;SRR=101;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:63:52,4,6,0:52:1711:4,6,0:149,107,0:0,-7.92651,-142.378,-9.50088,-137.383,-143.273,-15.6536,-143.582,-145.079,-151.28 0|1:42:23,7,10,0:23:760:7,10,0:265,173,0:-6.61414,0,-56.1287,-3.70327,-48.3954,-58.8767,-13.5378,-58.2359,-61.887,-71.7384 0|0:25:16,2,4,3:16:532:2,4,3:76,71,106:-3.59184,-4.54482,-45.5955,-4.36272,-42.113,-44.7614,0,-37.8359,-37.6069,-40.7891 0|0:17:12,1,4,0:12:408:1,4,0:38,72,0:-0.514139,-2.17706,-34.7148,0,-30.8577,-31.5767,-4.1265,-35.0159,-32.7809,-36.9433 dDocent_Contig_15315 136 . T C 299.29 . AB=0.625;ABP=5.18177;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X2M1X;DP=27;DPB=27;DPRA=2.90909;EPP=24.725;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=399;QR=647;RO=17;RPL=0;RPP=24.725;RPPR=39.9253;RPR=10;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=39.9253;SRR=17;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:16:6,10:6:233:10:399:-31.4518,0,-16.5228 0|0:5:5,0:5:185:0:0:0,-1.50515,-17.0087 .:.:.:.:.:.:.:. 0|0:6:6,0:6:229:0:0:0,-1.80618,-20.9717 dDocent_Contig_15316 16 . G A 796.28 . AB=0.378049;ABP=13.6028;AC=4;AF=0.5;AN=8;AO=31;CIGAR=1X;DP=82;DPB=82;DPRA=0;EPP=61.9202;EPPR=105.24;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.967742;PAIREDR=0.901961;PAO=0;PQA=0;PQR=0;PRO=0;QA=1225;QR=2036;RO=51;RPL=0;RPP=70.3259;RPPR=113.755;RPR=31;RUN=1;SAF=30;SAP=61.9202;SAR=1;SRF=50;SRP=105.24;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:13,4:13:527:4:160:-9.66629,0,-42.6592 0/1:13:2,11:2:81:11:431:-35.227,0,-3.77234 0/1:28:20,8:20:794:8:308:-19.6457,0,-63.3404 0/1:24:16,8:16:634:8:326:-22.4851,0,-50.1676 dDocent_Contig_15317 14 . A T 327.874 . AB=0.234375;ABP=42.2325;AC=2;AF=0.25;AN=8;AO=15;CIGAR=2M1X2M;DP=154;DPB=152.2;DPRA=0.711111;EPP=35.5824;EPPR=298.331;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=602;QR=5275;RO=136;RPL=0;RPP=35.5824;RPPR=298.331;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=136;SRP=298.331;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:74:74,0,0:74:2872:0,0:0,0:0,-22.2762,-258.635,-22.2762,-258.635,-258.635 0|1:41:26,3,12:26:1015:3,12:107,484:-32.1065,-31.2204,-113.747,0,-74.75,-79.8563 0|1:23:20,0,3:20:774:0,3:0,118:-4.07789,-10.0985,-73.6686,0,-63.9622,-63.0591 0|0:16:16,0,0:16:614:0,0:0,0:0,-4.81648,-55.5977,-4.81648,-55.5977,-55.5977 dDocent_Contig_15318 209 . N G 316.414 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=9;CIGAR=1X;DP=9;DPB=9;DPRA=0;EPP=22.5536;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=340;QR=0;RO=0;RPL=9;RPP=22.5536;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:78:-7.40347,-0.60206,0 1/1:7:0,7:0:0:7:262:-23.9363,-2.10721,0 dDocent_Contig_15320 71 . A T 92.738 . AB=0.444444;ABP=3.25157;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=40;DPB=40;DPRA=0.870968;EPP=11.6962;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=148;QR=1280;RO=36;RPL=4;RPP=11.6962;RPPR=81.1833;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:14:14,0:14:490:0:0:0,-4.21442,-44.429 0/0:4:4,0:4:136:0:0:0,-1.20412,-12.5755 0/1:9:5,4:5:177:4:148:-10.9727,0,-13.5667 0/0:13:13,0:13:477:0:0:0,-3.91339,-43.2727 dDocent_Contig_15321 20 . C A 371.85 . AB=0.666667;ABP=7.35324;AC=1;AF=0.125;AN=8;AO=12;CIGAR=1X;DP=42;DPB=42;DPRA=2.25;EPP=29.068;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=485;QR=1175;RO=30;RPL=0;RPP=29.068;RPPR=68.1545;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:6,12:6:214:12:485:-38.5829,0,-14.1742 0/0:12:12,0:12:471:0:0:0,-3.61236,-42.7343 0/0:6:6,0:6:246:0:0:0,-1.80618,-22.5201 0/0:6:6,0:6:244:0:0:0,-1.80618,-22.3388 dDocent_Contig_15323 91 . T C 108.549 . AB=0.285714;ABP=11.386;AC=1;AF=0.125;AN=8;AO=10;CIGAR=1X;DP=102;DPB=102;DPRA=2.28205;EPP=24.725;EPPR=202.786;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.98913;PAO=0;PQA=0;PQR=0;PRO=0;QA=340;QR=3219;RO=92;RPL=10;RPP=24.725;RPPR=202.786;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=92;SRP=202.786;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:33:32,1:32:1146:1:29:0,-7.03433,-100.55 0/0:35:32,3:32:1116:3:105:0,-0.739955,-90.9473 0/1:21:15,6:15:518:6:206:-12.5536,0,-40.6237 0/0:13:13,0:13:439:0:0:0,-3.91339,-39.8304 dDocent_Contig_15325 53 . T A 328.033 . AB=0.393939;ABP=6.23461;AC=3;AF=0.375;AN=8;AO=13;CIGAR=1X;DP=44;DPB=44;DPRA=1;EPP=31.2394;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=522;QR=1254;RO=31;RPL=13;RPP=31.2394;RPPR=70.3259;RPR=0;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:11,0:11:445:0:0:0,-3.31133,-40.4057 0/1:10:8,2:8:324:2:82:-4.76938,0,-26.5185 0/1:12:7,5:7:281:5:200:-14.7676,0,-22.0502 0/1:11:5,6:5:204:6:240:-18.6641,0,-15.4327 dDocent_Contig_15326 91 . G T 633.816 . AB=0.884615;ABP=36.4176;AC=1;AF=0.125;AN=8;AO=23;CIGAR=1X;DP=46;DPB=46;DPRA=3.9;EPP=52.9542;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=801;QR=802;RO=23;RPL=23;RPP=52.9542;RPPR=52.9542;RPR=0;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:3,23:3:104:23:801:-64.5808,0,-1.87624 0/0:12:12,0:12:420:0:0:0,-3.61236,-38.1343 0/0:5:5,0:5:175:0:0:0,-1.50515,-16.0931 0/0:3:3,0:3:103:0:0:0,-0.90309,-9.61002 dDocent_Contig_15327 9 . G C 593.288 . AB=0.393443;ABP=9.02635;AC=4;AF=0.5;AN=8;AO=24;CIGAR=1X;DP=61;DPB=61;DPRA=0;EPP=55.1256;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.958333;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=929;QR=1410;RO=37;RPL=0;RPP=55.1256;RPPR=83.3548;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:11,3:11:412:3:117:-6.69596,0,-33.2133 0/1:13:10,3:10:387:3:117:-6.99699,0,-31.2741 0/1:22:8,14:8:301:14:541:-42.4126,0,-20.8248 0/1:12:8,4:8:310:4:154:-10.6211,0,-24.6513 dDocent_Contig_15328 30 . C A 7661.56 . AB=0.575621;ABP=25.0142;AC=4;AF=0.5;AN=8;AO=255;CIGAR=1M1I2M1X;DP=443;DPB=507.5;DPRA=0;EPP=556.736;EPPR=400.39;GTI=0;LEN=1;MEANALT=2.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.992157;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=10068;QR=7261;RO=183;RPL=0;RPP=556.736;RPPR=400.39;RPR=255;RUN=1;SAF=255;SAP=556.736;SAR=0;SRF=183;SRP=400.39;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:185:56,127:56:2216:127:4991:-393.637,0,-144.133 0|1:124:70,53:70:2779:53:2095:-151.314,0,-212.797 0|1:75:30,44:30:1193:44:1754:-135.429,0,-84.9957 0|1:59:27,31:27:1073:31:1228:-93.1735,0,-79.2316 dDocent_Contig_15329 109 . T C 94.1571 . AB=0.3125;ABP=7.89611;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=48;DPB=48;DPRA=1;EPP=13.8677;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=40;MQMR=58.1395;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=178;QR=1475;RO=43;RPL=0;RPP=13.8677;RPPR=96.3836;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=96.3836;SRR=43;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:11,5:11:380:5:178:-10.9384,0,-29.4539 0/0:29:29,0:29:994:0:0:0,-8.72987,-89.5082 0/0:3:3,0:3:101:0:0:0,-0.90309,-9.4236 ./.:.:.:.:.:.:.:. dDocent_Contig_15330 25 . A G 106.459 . AB=0.225806;ABP=23.254;AC=2;AF=0.25;AN=8;AO=8;CIGAR=1X;DP=53;DPB=53;DPRA=1.27273;EPP=4.09604;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=51.875;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.533333;PAO=0;PQA=0;PQR=0;PRO=0;QA=285;QR=1778;RO=45;RPL=0;RPP=20.3821;RPPR=100.727;RPR=8;RUN=1;SAF=5;SAP=4.09604;SAR=3;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:8,2:8:309:2:68:-3.36927,0,-25.1555 0/1:21:16,5:16:620:5:185:-10.6695,0,-49.8094 0/0:11:11,0:11:442:0:0:0,-3.31133,-40.1349 0/0:11:10,1:10:407:1:32:0,-0.36511,-34.0442 dDocent_Contig_15331 25 . A C 192.079 . AB=0.388889;ABP=4.9405;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=74;DPB=74;DPRA=0.964286;EPP=18.2106;EPPR=148.499;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.955224;PAO=0;PQA=0;PQR=0;PRO=0;QA=285;QR=2668;RO=67;RPL=0;RPP=18.2106;RPPR=148.499;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=67;SRP=148.499;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:11,7:11:442:7:285:-20.6059,0,-34.7149 0/0:14:14,0:14:561:0:0:0,-4.21442,-50.8326 0/0:15:15,0:15:599:0:0:0,-4.51545,-54.2496 0/0:27:27,0:27:1066:0:0:0,-8.12781,-96.2295 dDocent_Contig_15334 17 . T C 164.213 . AB=0.210526;ABP=30.668;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=54;DPB=54;DPRA=7.125;EPP=20.3821;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.934783;PAO=0;PQA=0;PQR=0;PRO=0;QA=321;QR=1844;RO=46;RPL=0;RPP=20.3821;RPPR=102.898;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:38:30,8:30:1207:8:321:-17.8184,0,-97.4635 0/0:13:13,0:13:514:0:0:0,-3.91339,-46.6019 0/0:1:1,0:1:41:0:0:0,-0.30103,-4.09457 0/0:2:2,0:2:82:0:0:0,-0.60206,-7.77968 dDocent_Contig_15335 120 . A T 36.7273 . AB=0.25;ABP=7.35324;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X;DP=23;DPB=23;DPRA=1.6;EPP=7.35324;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.904762;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=855;RO=21;RPL=2;RPP=7.35324;RPPR=48.6112;RPR=0;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=48.6112;SRR=21;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:6:6,0:6:244:0:0:0,-1.80618,-22.3388 0/0:3:3,0:3:122:0:0:0,-0.90309,-11.3725 0/0:6:6,0:6:245:0:0:0,-1.80618,-22.4295 0/1:8:6,2:6:244:2:82:-5.37144,0,-19.9306 dDocent_Contig_15336 10 . A T 1827.88 . AB=0.2;ABP=73.366;AC=3;AF=0.375;AN=8;AO=18;CIGAR=1M1D1X1M1X16M;DP=90;DPB=86.5714;DPRA=0;EPP=42.0968;EPPR=33.4109;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=702;QR=555;RO=14;RPL=0;RPP=42.0968;RPPR=33.4109;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=14;SRP=33.4109;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:32:6,6,17,2:6:235:6,17,2:237,671,57:-53.6016,-35.9025,-53.4217,-0.181305,0,-14.3956,-50.8908,-50.7108,-15.0022,-69.6117 0|0:17:5,4,8,0:5:200:4,8,0:150,317,0:-24.6015,-13.8287,-29.1014,0,-4.21525,-14.081,-26.1067,-30.3055,-16.4892,-42.5853 1|0:27:1,3,23,0:1:40:3,23,0:119,908,0:-80.9096,-71.4143,-73.8066,-6.49766,0,-2.86987,-81.2106,-74.7096,-9.79356,-84.5059 1|0:14:2,5,7,0:2:80:5,7,0:196,269,0:-30.995,-15.4756,-20.5641,-9.52017,0,-14.0054,-31.5971,-22.0693,-16.1126,-38.189 dDocent_Contig_15337 27 . A C 37.6978 . AB=0.157895;ABP=22.325;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=52;DPB=52;DPRA=1.72727;EPP=9.52472;EPPR=92.7497;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=0.918367;PAO=0;PQA=0;PQR=0;PRO=0;QA=120;QR=1916;RO=49;RPL=0;RPP=9.52472;RPPR=109.412;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=47;SRP=92.7497;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:23:23,0:23:886:0:0:0,-6.92369,-80.045 0/0:9:9,0:9:346:0:0:0,-2.70927,-31.4904 0/1:19:16,3:16:644:3:120:-5.46812,0,-52.5751 0/0:1:1,0:1:40:0:0:0,-0.30103,-3.99568 dDocent_Contig_15338 153 . A C 35.8378 . AB=0.157895;ABP=22.325;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=98;DPB=98;DPRA=0.721519;EPP=9.52472;EPPR=207.129;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=57.2872;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.946809;PAO=0;PQA=0;PQR=0;PRO=0;QA=118;QR=3772;RO=94;RPL=0;RPP=9.52472;RPPR=207.129;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=207.129;SRR=94;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:9:9,0:9:356:0:0:0,-2.70927,-26.7561 0/0:36:36,0:36:1448:0:0:0,-10.8371,-122.363 0/0:34:33,0:33:1317:0:0:0,-9.93399,-118.433 0/1:19:16,3:16:651:3:118:-5.28263,0,-53.203 dDocent_Contig_15339 22 . C G 773.481 . AB=0.2;ABP=69.4574;AC=0;AF=0;AN=8;AO=17;CIGAR=2X2M1X1M2I1X;DP=129;DPB=133.857;DPRA=0;EPP=39.9253;EPPR=168.042;GTI=0;LEN=1;MEANALT=2.33333;MQM=9.41176;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=672;QR=2936;RO=76;RPL=0;RPP=39.9253;RPPR=168.042;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=76;SRP=168.042;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:36:13,10,12:13:481:10,12:395,466:-34.5142,-33.6522,-69.9718,0,-34.6887,-35.8643 0|0:44:31,0,12:31:1214:0,12:0,450:-27.4829,-36.8148,-136.644,0,-99.8021,-96.1897 0|0:28:18,3,7:18:694:3,7:119,270:-16.9521,-20.6605,-76.7398,0,-55.472,-55.1198 0|0:21:14,4,3:14:547:4,3:158,120:-5.79688,-7.60558,-51.3641,0,-42.6815,-44.2891 dDocent_Contig_15340 9 . C T 103.62 . AB=0.0714286;ABP=47.6806;AC=0;AF=0;AN=8;AO=2;CIGAR=1X3M1X12M2I1X2M;DP=47;DPB=47.6;DPRA=14;EPP=7.35324;EPPR=79.0118;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=80;QR=1352;RO=35;RPL=0;RPP=7.35324;RPPR=79.0118;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:8:6,0,2:6:230:0,2:0,81:-5.27749,-7.08367,-25.9415,0,-19.257,-18.6549 0|0:28:21,2,4:21:804:2,4:80,148:-5.79052,-5.50775,-70.9086,0,-59.4073,-64.7952 0|0:9:6,0,2:6:239:0,2:0,79:-4.6911,-6.49727,-26.1797,0,-19.6799,-19.0778 0|0:2:2,0,0:2:79:0,0:0,0:0,-0.60206,-7.49763,-0.60206,-7.49763,-7.49763 dDocent_Contig_15341 13 . A C 151.375 . AB=0.148649;ABP=82.3571;AC=2;AF=0.25;AN=8;AO=16;CIGAR=1X;DP=197;DPB=197;DPRA=0;EPP=37.7539;EPPR=396.047;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.928177;PAO=0;PQA=0;PQR=0;PRO=0;QA=649;QR=7225;RO=181;RPL=0;RPP=37.7539;RPPR=396.047;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=181;SRP=396.047;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:48:40,8:40:1594:8:325:-15.1702,0,-129.249 0/0:75:73,2:73:2915:2:81:0,-14.8915,-254.751 0/0:48:45,3:45:1804:3:123:0,-2.98465,-151.108 0/1:26:23,3:23:912:3:120:-3.36053,0,-74.5574 dDocent_Contig_15342 14 . C T 147.929 . AB=0.114865;ABP=193.689;AC=2;AF=0.25;AN=8;AO=22;CIGAR=1X;DP=324;DPB=324;DPRA=1.05128;EPP=50.7827;EPPR=658.795;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=0.954545;PAIREDR=0.990066;PAO=0;PQA=0;PQR=0;PRO=0;QA=890;QR=12152;RO=302;RPL=0;RPP=50.7827;RPPR=658.795;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=302;SRP=658.795;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:78:78,0:78:3141:0:0:0,-23.4803,-282.756 0/0:98:93,5:93:3730:5:201:0,-11.0304,-317.235 0/1:82:73,9:73:2954:9:368:-8.80089,0,-241.256 0/1:66:58,8:58:2327:8:321:-9.38993,0,-189.715 dDocent_Contig_15343 44 . T A 924.407 . AB=0.16;ABP=28.1125;AC=0;AF=0;AN=8;AO=4;CIGAR=1X3M1X;DP=76;DPB=76;DPRA=0;EPP=11.6962;EPPR=85.5263;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=159;QR=1500;RO=38;RPL=0;RPP=11.6962;RPPR=85.5263;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:35:15,0,20:15:599:0,20:0,794:-61.2415,-65.757,-115.093,0,-49.7342,-43.7136 0|0:16:9,0,7:9:359:0,7:0,265:-19.3883,-22.0976,-51.6738,0,-29.9633,-27.8561 0|0:11:7,2,2:7:278:2,2:81,82:-4.66342,-0.0939437,-22.3679,0,-16.1989,-22.2778 0|0:14:7,2,5:7:264:2,5:78,201:-14.4655,-10.1645,-31.1744,0,-15.2019,-20.1112 dDocent_Contig_15344 12 . G A 294.856 . AB=0.307692;ABP=15.538;AC=3;AF=0.375;AN=8;AO=12;CIGAR=1X;DP=49;DPB=49;DPRA=1.3;EPP=29.068;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=0.666667;PAIREDR=0.702703;PAO=0;PQA=0;PQR=0;PRO=0;QA=485;QR=1494;RO=37;RPL=0;RPP=29.068;RPPR=83.3548;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:12,1:12:489:1:41:-0.181177,0,-40.4477 0/1:10:7,3:7:285:3:117:-7.89828,0,-23.0141 0/1:16:8,8:8:318:8:327:-24.9836,0,-24.1693 0/0:10:10,0:10:402:0:0:0,-3.0103,-36.539 dDocent_Contig_15345 22 . A G 79.6214 . AB=0.307692;ABP=7.18621;AC=2;AF=0.25;AN=8;AO=5;CIGAR=1X;DP=31;DPB=31;DPRA=4.83333;EPP=13.8677;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=204;QR=1040;RO=26;RPL=0;RPP=13.8677;RPPR=59.4686;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:7:6,1:6:245:1:41:-1.98736,0,-20.3223 0/1:6:3,3:3:121:3:122:-9.56631,0,-9.47402 0/0:16:15,1:15:592:1:41:0,-0.721913,-49.5197 0/0:2:2,0:2:82:0:0:0,-0.60206,-7.77968 dDocent_Contig_15346 93 . A G 214.835 . AB=0.314286;ABP=13.4954;AC=3;AF=0.375;AN=8;AO=12;CIGAR=1X;DP=49;DPB=49;DPRA=0;EPP=29.068;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.333333;PAIREDR=0.864865;PAO=0;PQA=0;PQR=0;PRO=0;QA=443;QR=1401;RO=37;RPL=12;RPP=29.068;RPPR=83.3548;RPR=0;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:9,2:9:341:2:73:-3.61937,0,-27.735 0/1:6:3,3:3:114:3:98:-7.3374,0,-8.82604 0/1:18:12,6:12:451:6:233:-15.9215,0,-35.5184 0/0:14:13,1:13:495:1:39:0,-0.317855,-41.0006 dDocent_Contig_15347 137 . A G 73.8186 . AB=0.428571;ABP=3.32051;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X2M1X;DP=29;DPB=29;DPRA=0.954545;EPP=9.52472;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.923077;PAO=0;PQA=0;PQR=0;PRO=0;QA=120;QR=1011;RO=26;RPL=0;RPP=9.52472;RPPR=59.4686;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=59.4686;SRR=26;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:10:10,0:10:390:0:0:0,-3.0103,-35.4547 0|0:9:9,0:9:359:0:0:0,-2.70927,-32.6733 0|1:7:4,3:4:161:3:120:-9.08069,0,-12.7683 0|0:3:3,0:3:101:0:0:0,-0.90309,-9.4236 dDocent_Contig_15349 12 . A G 97.4726 . AB=0.307692;ABP=7.18621;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=70;DPB=70;DPRA=0.962963;EPP=16.0391;EPPR=141.985;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.96875;PAO=0;PQA=0;PQR=0;PRO=0;QA=244;QR=2504;RO=64;RPL=0;RPP=16.0391;RPPR=141.985;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=64;SRP=141.985;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:9,4:9:360:4:163:-11.145,0,-28.85 0/0:16:15,1:15:576:1:40:0,-0.820801,-48.1784 0/0:18:18,0:18:725:0:0:0,-5.41854,-65.5763 0/0:23:22,1:22:843:1:41:0,-2.82912,-72.0904 dDocent_Contig_15350 130 . A G 1103.75 . AB=0.122449;ABP=124.347;AC=0;AF=0;AN=8;AO=12;CIGAR=1X1M2X1M1X;DP=121;DPB=121;DPRA=0;EPP=29.068;EPPR=100.727;GTI=0;LEN=1;MEANALT=4;MQM=11.5833;MQMR=59.4444;NS=4;NUMALT=5;ODDS=0;PAIRED=0;PAIREDR=0.622222;PAO=0;PQA=0;PQR=0;PRO=0;QA=464;QR=1744;RO=45;RPL=0;RPP=29.068;RPPR=100.727;RPR=12;RUN=1;SAF=0;SAP=29.068;SAR=12;SRF=0;SRP=100.727;SRR=45;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:23:11,0,0,0,0,12:11:431:0,0,0,0,12:0,0,0,0,445:-32.5437,-35.855,-71.3111,-35.855,-71.3111,-71.3111,-35.855,-71.3111,-71.3111,-71.3111,-35.855,-71.3111,-71.3111,-71.3111,-71.3111,0,-35.8335,-35.8335,-35.8335,-35.8335,-32.2211 0|0:29:12,3,6,0,0,8:12:458:3,6,0,0,8:116,226,0,0,298:-20.7935,-22.4598,-59.1803,-18.7179,-54.3941,-54.5279,-24.4058,-60.0834,-56.334,-62.0362,-24.4058,-60.0834,-56.334,-62.0362,-62.0362,0,-35.7699,-32.0267,-37.7174,-37.7174,-35.3091 0|0:38:17,5,4,2,4,5:17:663:5,4,2,4,5:198,152,80,158,188:-9.29584,-10.6562,-63.6728,-9.6298,-60.3974,-62.9574,-7.84134,-58.6172,-57.6001,-61.7853,-1.38121,-52.1709,-51.1531,-49.3766,-54.7356,0,-50.7926,-49.7741,-47.9965,-41.5477,-53.0545 0|0:31:5,4,3,0,0,19:5:192:4,3,0,0,19:150,110,0,0,718:-55.1359,-53.5625,-68.1143,-53.2538,-65.9357,-68.1089,-56.641,-69.3185,-69.012,-72.4012,-56.641,-69.3185,-69.012,-72.4012,-72.4012,0,-12.798,-12.4706,-15.8498,-15.8498,-10.1303 dDocent_Contig_15351 107 . N A 841.004 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=27;CIGAR=1X;DP=27;DPB=27;DPRA=0;EPP=61.6401;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=23.3201;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=931;QR=0;RO=0;RPL=0;RPP=61.6401;RPPR=0;RPR=27;RUN=1;SAF=0;SAP=61.6401;SAR=27;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:27:0,27:0:0:27:931:-84.1004,-8.12781,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_15352 42 . T C 74.4484 . AB=0.285714;ABP=8.59409;AC=2;AF=0.25;AN=8;AO=4;CIGAR=1X;DP=56;DPB=56;DPRA=0.333333;EPP=11.6962;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=157;QR=2037;RO=52;RPL=0;RPP=11.6962;RPPR=115.927;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:27:27,0:27:1076:0:0:0,-8.12781,-97.1283 0/1:8:7,1:7:251:1:40:-1.58744,0,-20.5134 0/1:6:3,3:3:114:3:117:-9.10373,0,-8.82563 0/0:15:15,0:15:596:0:0:0,-4.51545,-53.9789 dDocent_Contig_15353 16 . C T 718.517 . AB=0.385714;ABP=10.9517;AC=4;AF=0.5;AN=8;AO=27;CIGAR=1X;DP=70;DPB=70;DPRA=0;EPP=61.6401;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1098;QR=1735;RO=43;RPL=0;RPP=61.6401;RPPR=96.3836;RPR=27;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:19,5:19:769:5:205:-11.6103,0,-62.305 0/1:20:11,9:11:444:9:366:-27.2846,0,-34.2954 0/1:16:7,9:7:281:9:365:-28.3984,0,-20.8446 0/1:10:6,4:6:241:4:162:-11.9564,0,-19.0562 dDocent_Contig_15354 13 . C T 140.244 . AB=0.191489;ABP=41.8658;AC=3;AF=0.375;AN=8;AO=9;CIGAR=1X;DP=85;DPB=85;DPRA=0.412281;EPP=22.5536;EPPR=168.042;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.986842;PAO=0;PQA=0;PQR=0;PRO=0;QA=360;QR=3027;RO=76;RPL=0;RPP=22.5536;RPPR=168.042;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=76;SRP=168.042;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:38:38,0:38:1517:0:0:0,-11.4391,-136.779 0/1:20:16,4:16:645:4:161:-8.85467,0,-52.3637 0/1:15:13,2:13:511:2:81:-3.17028,0,-41.8196 0/1:12:9,3:9:354:3:118:-7.39015,0,-28.6094 dDocent_Contig_15355 19 . T C 881.105 . AB=0.373626;ABP=15.6335;AC=4;AF=0.5;AN=8;AO=34;CIGAR=1X;DP=91;DPB=91;DPRA=0;EPP=76.8404;EPPR=126.784;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.882353;PAIREDR=0.877193;PAO=0;PQA=0;PQR=0;PRO=0;QA=1335;QR=2241;RO=57;RPL=0;RPP=76.8404;RPPR=126.784;RPR=34;RUN=1;SAF=34;SAP=76.8404;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:17,19:17:674:19:745:-56.5364,0,-50.1545 0/1:32:29,3:29:1128:3:119:-1.46243,0,-92.1707 0/1:14:10,4:10:399:4:158:-10.3859,0,-32.0551 0/1:9:1,8:1:40:8:313:-25.823,0,-1.28641 dDocent_Contig_15356 28 . T G 590.509 . AB=0.615385;ABP=6.01695;AC=4;AF=0.5;AN=8;AO=20;CIGAR=1X;DP=45;DPB=45;DPRA=0.666667;EPP=46.4397;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=769;QR=983;RO=25;RPL=0;RPP=46.4397;RPPR=57.2971;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:6,12:6:243:12:472:-37.409,0,-16.8296 0/0:15:15,0:15:607:0:0:0,-4.51545,-54.9677 0/1:8:4,4:4:133:4:160:-12.3752,0,-9.87918 1/1:4:0,4:0:0:4:137:-12.6646,-1.20412,0 dDocent_Contig_15358 7 . A T 171.424 . AB=0.75;ABP=7.35324;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=52;DPB=52;DPRA=0.733333;EPP=18.2106;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.933333;PAO=0;PQA=0;PQR=0;PRO=0;QA=271;QR=1708;RO=45;RPL=0;RPP=18.2106;RPPR=100.727;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:14:14,0:14:525:0:0:0,-4.21442,-47.5898 0/0:16:16,0:16:610:0:0:0,-4.81648,-55.2393 0/0:14:13,1:13:497:1:39:0,-0.317855,-41.1801 0/1:8:2,6:2:76:6:232:-18.8407,0,-4.80643 dDocent_Contig_15359 46 . C T 526.67 . AB=0.403846;ABP=7.18621;AC=3;AF=0.375;AN=8;AO=21;CIGAR=1X3M3X1M2X2M4D1X;DP=55;DPB=50.0588;DPRA=5.77778;EPP=48.6112;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=807;QR=1314;RO=34;RPL=21;RPP=48.6112;RPPR=76.8404;RPR=0;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:18:10,8:10:386:8:304:-22.2984,0,-29.6761 0|1:28:19,9:19:731:9:348:-23.2478,0,-57.6889 0|0:3:3,0:3:119:0:0:0,-0.90309,-11.0954 0|1:6:2,4:2:78:4:155:-12.5186,0,-5.59712 dDocent_Contig_15360 149 . A G 112.529 . AB=0.571429;ABP=3.32051;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=34;DPB=34;DPRA=0.777778;EPP=11.6962;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=163;QR=1057;RO=30;RPL=0;RPP=11.6962;RPPR=68.1545;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=68.1545;SRR=30;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:19:19,0:19:675:0:0:0,-5.71957,-61.0742 0/1:7:3,4:3:101:4:163:-12.9512,0,-7.31656 0/0:1:1,0:1:33:0:0:0,-0.30103,-3.29913 0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6639 dDocent_Contig_15361 9 . C T 129.057 . AB=0.21875;ABP=24.9965;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=79;DPB=79;DPRA=1.46875;EPP=20.3821;EPPR=116.814;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=56.2254;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.802817;PAO=0;PQA=0;PQR=0;PRO=0;QA=301;QR=2679;RO=71;RPL=0;RPP=20.3821;RPPR=157.185;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=66;SRP=116.814;SRR=5;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:32:25,7:25:944:7:262:-14.3034,0,-75.5997 0/0:12:12,0:12:468:0:0:0,-3.61236,-42.194 0/0:20:20,0:20:732:0:0:0,-6.0206,-65.3116 0/0:15:14,1:14:535:1:39:0,-0.618885,-43.8193 dDocent_Contig_15362 46 . G T 269.661 . AB=0.314286;ABP=13.4954;AC=2;AF=0.25;AN=8;AO=12;CIGAR=1X;DP=83;DPB=83;DPRA=0.588889;EPP=29.068;EPPR=157.185;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.985915;PAO=0;PQA=0;PQR=0;PRO=0;QA=487;QR=2806;RO=71;RPL=0;RPP=29.068;RPPR=157.185;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=71;SRP=157.185;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:18:17,1:17:691:1:41:0,-1.32397,-58.4241 0/1:14:8,6:8:309:6:245:-18.2151,0,-23.9546 0/0:30:30,0:30:1173:0:0:0,-9.0309,-105.848 0/1:21:16,5:16:633:5:201:-12.1489,0,-50.9794 dDocent_Contig_15363 195 . G T 524.956 . AB=0.540541;ABP=3.5385;AC=3;AF=0.375;AN=8;AO=20;CIGAR=2X;DP=39;DPB=39;DPRA=6.16667;EPP=46.4397;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=755;QR=712;RO=19;RPL=20;RPP=46.4397;RPPR=44.2683;RPR=0;RUN=1;SAF=0;SAP=46.4397;SAR=20;SRF=0;SRP=44.2683;SRR=19;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:9:6,3:6:212:3:117:-8.20094,0,-16.7085 0|1:19:6,13:6:231:13:490:-38.7212,0,-15.4378 0|1:9:5,4:5:196:4:148:-10.9712,0,-15.3061 0|0:2:2,0:2:73:0:0:0,-0.60206,-6.93007 dDocent_Contig_15364 15 . G A 480.978 . AB=0.5;ABP=3.0103;AC=1;AF=0.125;AN=8;AO=17;CIGAR=1X;DP=59;DPB=59;DPRA=4.08;EPP=39.9253;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=660;QR=1682;RO=42;RPL=0;RPP=39.9253;RPPR=94.2121;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:34:17,17:17:680:17:660:-49.4951,0,-51.2949 0/0:20:20,0:20:805:0:0:0,-6.0206,-72.7643 0/0:1:1,0:1:40:0:0:0,-0.30103,-3.99568 0/0:4:4,0:4:157:0:0:0,-1.20412,-14.5084 dDocent_Contig_15365 9 . C A 493.021 . AB=0.425532;ABP=5.27418;AC=3;AF=0.375;AN=8;AO=20;CIGAR=1X;DP=68;DPB=68;DPRA=0.746032;EPP=46.4397;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=753;QR=1818;RO=48;RPL=0;RPP=46.4397;RPPR=107.241;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:13,13:13:505:13:489:-36.5248,0,-37.9723 0/1:10:6,4:6:204:4:150:-10.8544,0,-15.6751 0/1:11:8,3:8:303:3:114:-7.32089,0,-24.3162 0/0:21:21,0:21:806:0:0:0,-6.32163,-72.8646 dDocent_Contig_15366 172 . C T 34.168 . AB=0.196078;ABP=43.9277;AC=2;AF=0.25;AN=8;AO=11;CIGAR=1X;DP=98;DPB=98;DPRA=0.627451;EPP=19.0002;EPPR=166.769;GTI=0;LEN=1;MEANALT=1;MQM=24;MQMR=33.9885;NS=4;NUMALT=1;ODDS=0;PAIRED=0.0909091;PAIREDR=0.149425;PAO=0;PQA=0;PQR=0;PRO=0;QA=412;QR=3408;RO=87;RPL=11;RPP=26.8965;RPPR=191.928;RPR=0;RUN=1;SAF=1;SAP=19.0002;SAR=10;SRF=3;SRP=166.769;SRR=84;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:34:34,0:34:1332:0:0:0,-10.235,-94.1672 0/1:38:31,7:31:1217:7:274:-4.01236,0,-75.4861 0/0:13:12,1:12:456:1:32:0,-2.03437,-29.7159 0/1:13:10,3:10:403:3:106:-2.78369,0,-21.8939 dDocent_Contig_15367 29 . G A 980.139 . AB=0.486111;ABP=3.13094;AC=4;AF=0.5;AN=8;AO=35;CIGAR=1X;DP=72;DPB=72;DPRA=0;EPP=79.0118;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1396;QR=1490;RO=37;RPL=0;RPP=79.0118;RPPR=83.3548;RPR=35;RUN=1;SAF=35;SAP=79.0118;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:9,13:9:362:13:521:-40.6132,0,-26.3215 0/1:10:3,7:3:123:7:282:-22.7429,0,-8.45449 0/1:22:12,10:12:483:10:399:-29.6451,0,-37.1987 0/1:18:13,5:13:522:5:194:-12.4107,0,-41.9081 dDocent_Contig_15369 156 . C G 31.4257 . AB=0.333333;ABP=4.45795;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X;DP=34;DPB=34;DPRA=0.642857;EPP=7.35324;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=70;QR=1066;RO=32;RPL=0;RPP=7.35324;RPPR=72.4974;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=72.4974;SRR=32;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:12:12,0:12:400:0:0:0,-3.61236,-36.3154 0/1:6:4,2:4:144:2:70:-4.84122,0,-11.5072 0/0:7:7,0:7:201:0:0:0,-2.10721,-18.37 0/0:9:9,0:9:321:0:0:0,-2.70927,-29.232 dDocent_Contig_15370 1 . N G 67.4314 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=71;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:71:-6.74206,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_15371 12 . T C 363.624 . AB=0.388889;ABP=6.8707;AC=3;AF=0.375;AN=8;AO=14;CIGAR=1X;DP=45;DPB=45;DPRA=1.33333;EPP=33.4109;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.870968;PAO=0;PQA=0;PQR=0;PRO=0;QA=558;QR=1262;RO=31;RPL=0;RPP=33.4109;RPPR=70.3259;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:9:9,0:9:367:0:0:0,-2.70927,-33.3953 0/1:23:20,3:20:813:3:123:-4.5411,0,-66.5611 0/1:2:1,1:1:41:1:40:-3.39362,0,-3.49251 0/1:11:1,10:1:41:10:395:-32.5943,0,-0.783237 dDocent_Contig_15372 9 . C T 197.906 . AB=0.25;ABP=16.0391;AC=1;AF=0.125;AN=8;AO=6;CIGAR=2M1X1M;DP=61;DPB=63;DPRA=2.52632;EPP=16.0391;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.666667;PAIREDR=0.78;PAO=0;PQA=0;PQR=0;PRO=0;QA=233;QR=1931;RO=50;RPL=0;RPP=16.0391;RPPR=111.584;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:24:18,0,6:18:697:0,6:0,233:-14.1154,-19.5339,-76.7914,0,-57.6452,-55.839 0|0:12:12,0,0:12:465:0,0:0,0:0,-3.61236,-42.202,-3.61236,-42.202,-42.202 0|0:18:14,4,0:14:538:4,0:157,0:-9.07315,0,-43.3457,-13.2876,-44.5498,-57.4475 0|0:7:6,0,0:6:231:0,0:0,0:0,-1.80618,-20.8116,-1.80618,-20.8116,-20.8116 dDocent_Contig_15373 31 . C T 454.714 . AB=0.282609;ABP=40.775;AC=4;AF=0.5;AN=8;AO=26;CIGAR=1X;DP=92;DPB=92;DPRA=0;EPP=59.4686;EPPR=146.327;GTI=0;LEN=1;MEANALT=1;MQM=55.6923;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=881;QR=2659;RO=66;RPL=0;RPP=59.4686;RPPR=146.327;RPR=26;RUN=1;SAF=0;SAP=59.4686;SAR=26;SRF=66;SRP=146.327;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:38:31,7:31:1263:7:243:-10.7527,0,-102.494 0/1:19:12,7:12:474:7:243:-16.4874,0,-37.2848 0/1:23:13,10:13:514:10:329:-22.9551,0,-39.6783 0/1:12:10,2:10:408:2:66:-2.65042,0,-33.468 dDocent_Contig_15377 138 . A C 1335.4 . AB=0.08;ABP=41.3151;AC=0;AF=0;AN=8;AO=2;CIGAR=15M2X3M;DP=100;DPB=88.4;DPRA=0;EPP=7.35324;EPPR=87.6977;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=70;QR=1299;RO=39;RPL=0;RPP=7.35324;RPPR=87.6977;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=87.6977;SRR=39;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:25:15,7,2:15:508:7,2:205,70:-11.8472,0,-39.1511,-10.6502,-35.5598,-51.2862 0|0:10:1,9,0:1:34:9,0:283,0:-22.768,0,-0.388611,-23.0691,-3.09788,-25.8296 0|0:27:11,16,0:11:363:16,0:517,0:-38.7112,0,-24.8625,-42.0225,-29.679,-71.3744 0|0:38:12,26,0:12:394:26,0:857,0:-65.9972,0,-24.3384,-69.6095,-32.1652,-101.446 dDocent_Contig_15378 28 . G A 1045.37 . AB=0.470588;ABP=3.52123;AC=3;AF=0.375;AN=8;AO=32;CIGAR=1X1M;DP=177;DPB=177;DPRA=1.0625;EPP=72.4974;EPPR=300.502;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=58.0292;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.211679;PAO=0;PQA=0;PQR=0;PRO=0;QA=1269;QR=5398;RO=137;RPL=0;RPP=72.4974;RPPR=300.502;RPR=32;RUN=1;SAF=32;SAP=72.4974;SAR=0;SRF=137;SRP=300.502;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:68:36,0,32:36:1403:0,32:0,1269:-94.0046,-104.842,-218.854,0,-114.403,-104.77 0|0:64:64,0,0:64:2539:0,0:0,0:0,-19.2659,-228.654,-19.2659,-228.654,-228.654 0|1:29:24,5,0:24:949:5,0:198,0:-9.4666,0,-76.5626,-16.6913,-78.0678,-94.3639 0|1:16:13,3,0:13:507:3,0:121,0:-6.46372,0,-41.0445,-10.3771,-41.9476,-51.9245 dDocent_Contig_15379 52 . G A 2266.59 . AB=0.565217;ABP=8.10854;AC=4;AF=0.5;AN=8;AO=78;CIGAR=1X;DP=138;DPB=138;DPRA=0;EPP=172.385;EPPR=133.299;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3048;QR=2397;RO=60;RPL=78;RPP=172.385;RPPR=133.299;RPR=0;RUN=1;SAF=78;SAP=172.385;SAR=0;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:48:18,30:18:701:30:1148:-89.143,0,-48.9685 0/1:57:18,39:18:734:39:1539:-121.591,0,-49.2245 0/1:22:16,6:16:639:6:239:-15.2612,0,-51.2204 0/1:11:8,3:8:323:3:122:-8.06116,0,-26.1276 dDocent_Contig_15380 14 . G A 674.031 . AB=0.5625;ABP=4.09604;AC=6;AF=0.75;AN=8;AO=22;CIGAR=1X;DP=36;DPB=36;DPRA=0;EPP=50.7827;EPPR=33.4109;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=0.636364;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=877;QR=537;RO=14;RPL=0;RPP=50.7827;RPPR=33.4109;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=14;SRP=33.4109;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:7,11:7:274:11:438:-34.3565,0,-19.6085 1/1:1:0,1:0:0:1:41:-4.09457,-0.30103,0 0/1:14:7,7:7:263:7:285:-21.81,0,-19.8101 1/1:3:0,3:0:0:3:113:-10.5393,-0.90309,0 dDocent_Contig_15381 107 . N G 224.864 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=7;CIGAR=1X;DP=7;DPB=7;DPRA=0;EPP=18.2106;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=239;QR=0;RO=0;RPL=0;RPP=18.2106;RPPR=0;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:6:0,6:0:0:6:205:-18.7853,-1.80618,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:1:0,1:0:0:1:34:-3.39891,-0.30103,0 dDocent_Contig_15383 1 . N G 75.9287 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=80;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:80:-7.59179,-0.60206,0 dDocent_Contig_15384 117 . C A 59.1805 . AB=0.428571;ABP=3.32051;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=31;DPB=31;DPRA=0.875;EPP=9.52472;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=101;QR=921;RO=28;RPL=0;RPP=9.52472;RPPR=63.8115;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=63.8115;SRR=28;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:7:4,3:4:137:3:101:-7.31592,0,-10.5609 0/0:4:4,0:4:139:0:0:0,-1.20412,-12.8527 0/0:9:9,0:9:301:0:0:0,-2.70927,-27.4156 0/0:11:11,0:11:344:0:0:0,-3.31133,-31.2628 dDocent_Contig_15385 11 . G A 86.1949 . AB=0.137255;ABP=61.2994;AC=2;AF=0.25;AN=8;AO=7;CIGAR=1X;DP=89;DPB=89;DPRA=1.34211;EPP=18.2106;EPPR=181.071;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.963415;PAO=0;PQA=0;PQR=0;PRO=0;QA=282;QR=3181;RO=82;RPL=0;RPP=18.2106;RPPR=181.071;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=82;SRP=181.071;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:21,2:21:821:2:78:-0.479611,0,-67.2813 0/0:15:15,0:15:599:0:0:0,-4.51545,-54.2495 0/0:23:23,0:23:891:0:0:0,-6.92369,-80.5004 0/1:28:23,5:23:870:5:204:-10.3152,0,-70.1678 dDocent_Contig_15386 163 . T C 273.196 . AB=0.324324;ABP=12.9286;AC=2;AF=0.25;AN=8;AO=12;CIGAR=1X;DP=45;DPB=45;DPRA=4.625;EPP=29.068;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=457;QR=1240;RO=33;RPL=12;RPP=29.068;RPPR=74.6689;RPR=0;RUN=1;SAF=0;SAP=29.068;SAR=12;SRF=0;SRP=74.6689;SRR=33;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:12,7:12:450:7:271:-19.0369,0,-35.1258 0/1:18:13,5:13:489:5:186:-11.6804,0,-38.9347 0/0:6:6,0:6:227:0:0:0,-1.80618,-20.7924 0/0:2:2,0:2:74:0:0:0,-0.60206,-7.02588 dDocent_Contig_15387 29 . A C 531.702 . AB=0.380952;ABP=8.18047;AC=4;AF=0.666667;AN=6;AO=19;CIGAR=1X;DP=45;DPB=45;DPRA=0;EPP=44.2683;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=758;QR=1011;RO=26;RPL=0;RPP=44.2683;RPPR=59.4686;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:13,7:13:487:7:275:-19.094,0,-38.1437 0/1:22:13,9:13:524:9:363:-26.4116,0,-40.8842 1/1:3:0,3:0:0:3:120:-11.1873,-0.90309,0 ./.:.:.:.:.:.:.:. dDocent_Contig_15389 9 . C A 67.6043 . AB=0.097561;ABP=60.6867;AC=0;AF=0;AN=8;AO=4;CIGAR=1X3M1X;DP=131;DPB=131;DPRA=1.05128;EPP=11.6962;EPPR=252.73;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=159;QR=4483;RO=115;RPL=0;RPP=11.6962;RPPR=252.73;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=115;SRP=252.73;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:41:29,4,5,3:29:1122:4,5,3:159,205,117:-8.15519,-3.79538,-94.7388,0,-79.061,-90.6482,-7.27262,-86.327,-82.5373,-98.5158 0|0:56:53,0,2,0:53:2069:0,2,0:0,81,0:0,-15.9546,-186.028,-9.2887,-179.374,-178.772,-15.9546,-186.028,-179.374,-186.028 0|0:12:11,0,1,0:11:436:0,1,0:0,41,0:-0.466403,-3.77773,-39.6554,0,-36.2846,-35.9836,-3.77773,-39.6554,-36.2846,-39.6554 0|0:22:22,0,0,0:22:856:0,0,0:0,0,0:0,-6.62266,-77.3571,-6.62266,-77.3571,-77.3571,-6.62266,-77.3571,-77.3571,-77.3571 dDocent_Contig_15390 72 . C T 38.893 . AB=0.666667;ABP=3.73412;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X;DP=30;DPB=30;DPRA=0.333333;EPP=7.35324;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=68;QR=954;RO=28;RPL=2;RPP=7.35324;RPPR=63.8115;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:6:6,0:6:209:0:0:0,-1.80618,-19.1511 0/0:11:11,0:11:383:0:0:0,-3.31133,-34.805 0/0:10:10,0:10:328:0:0:0,-3.0103,-29.8394 0/1:3:1,2:1:34:2:68:-5.55484,0,-2.49582 dDocent_Contig_15392 112 . G A 969.622 . AB=0.6;ABP=8.65613;AC=4;AF=0.5;AN=8;AO=39;CIGAR=1X;DP=65;DPB=65;DPRA=0;EPP=87.6977;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=0.897436;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1355;QR=908;RO=26;RPL=0;RPP=87.6977;RPPR=59.4686;RPR=39;RUN=1;SAF=0;SAP=87.6977;SAR=39;SRF=0;SRP=59.4686;SRR=26;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:7,20:7:244:20:696:-54.8363,0,-14.1722 0/1:7:1,6:1:35:6:210:-17.1353,0,-1.39142 0/1:12:7,5:7:245:5:173:-12.2979,0,-18.7789 0/1:19:11,8:11:384:8:276:-19.4562,0,-29.1761 dDocent_Contig_15394 118 . A T 154.125 . AB=0.380952;ABP=5.59539;AC=2;AF=0.25;AN=8;AO=8;CIGAR=1X;DP=51;DPB=51;DPRA=0.7;EPP=20.3821;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.837209;PAO=0;PQA=0;PQR=0;PRO=0;QA=272;QR=1505;RO=43;RPL=0;RPP=20.3821;RPPR=96.3836;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=96.3836;SRR=43;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:24:24,0:24:814:0:0:0,-7.22472,-73.5666 0/1:14:8,6:8:291:6:210:-15.0276,0,-22.3254 0/0:6:6,0:6:218:0:0:0,-1.80618,-19.9729 0/1:7:5,2:5:182:2:62:-3.78099,0,-14.628 dDocent_Contig_15395 194 . C A 47.4139 . AB=0.230769;ABP=11.1951;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=30;DPB=30;DPRA=2.29412;EPP=9.52472;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.962963;PAO=0;PQA=0;PQR=0;PRO=0;QA=111;QR=1075;RO=27;RPL=3;RPP=9.52472;RPPR=61.6401;RPR=0;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=61.6401;SRR=27;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:9:9,0:9:366:0:0:0,-2.70927,-33.3052 0/0:5:5,0:5:205:0:0:0,-1.50515,-18.835 0/1:13:10,3:10:393:3:111:-6.44018,0,-31.8102 0/0:3:3,0:3:111:0:0:0,-0.90309,-10.3536 dDocent_Contig_15396 172 . C T 2994.6 . AB=0.654321;ABP=36.5207;AC=4;AF=0.5;AN=8;AO=106;CIGAR=1X;DP=162;DPB=162;DPRA=0;EPP=233.186;EPPR=122.441;GTI=0;LEN=1;MEANALT=1.25;MQM=48.066;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.818182;PAO=0;PQA=0;PQR=0;PRO=0;QA=3995;QR=2197;RO=55;RPL=106;RPP=233.186;RPPR=122.441;RPR=0;RUN=1;SAF=0;SAP=233.186;SAR=106;SRF=0;SRP=122.441;SRR=55;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:52:24,28:24:964:28:1066:-79.3895,0,-71.4062 0/1:32:7,24:7:277:24:923:-72.3739,0,-15.8386 0/1:50:12,38:12:477:38:1429:-111.864,0,-28.2293 0/1:28:12,16:12:479:16:577:-43.2302,0,-35.032 dDocent_Contig_15398 9 . C A 1263.91 . AB=0.4375;ABP=6.81038;AC=4;AF=0.5;AN=8;AO=49;CIGAR=1X3M1X3M1X;DP=112;DPB=112;DPRA=0;EPP=109.412;EPPR=137.642;GTI=0;LEN=1;MEANALT=1.25;MQM=58.3469;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=0.967742;PAO=0;PQA=0;PQR=0;PRO=0;QA=1866;QR=2368;RO=62;RPL=0;RPP=109.412;RPPR=137.642;RPR=49;RUN=1;SAF=49;SAP=109.412;SAR=0;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:30:18,11:18:684:11:420:-29.1056,0,-52.8492 0|1:30:12,18:12:462:18:665:-49.3305,0,-32.9001 0|1:35:25,10:25:949:10:393:-25.1931,0,-75.1876 0|1:17:7,10:7:273:10:388:-30.16,0,-19.82 dDocent_Contig_15401 43 . G A 217.269 . AB=0.344828;ABP=9.07545;AC=2;AF=0.25;AN=8;AO=10;CIGAR=1X;DP=55;DPB=55;DPRA=1.11538;EPP=24.725;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=368;QR=1622;RO=45;RPL=0;RPP=24.725;RPPR=100.727;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:19:19,0:19:693:0:0:0,-5.71957,-62.6984 0/0:7:7,0:7:258:0:0:0,-2.10721,-23.5751 0/1:15:7,8:7:255:8:294:-22.2969,0,-18.7864 0/1:14:12,2:12:416:2:74:-2.81146,0,-33.5513 dDocent_Contig_15402 7 . A G 425.642 . AB=0.06;ABP=87.0897;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X3M;DP=148;DPB=148;DPRA=0;EPP=9.52472;EPPR=25.9689;GTI=0;LEN=1;MEANALT=4;MQM=36.3333;MQMR=54.2136;NS=4;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=0.407767;PAO=0;PQA=0;PQR=0;PRO=0;QA=78;QR=3724;RO=103;RPL=0;RPP=9.52472;RPPR=226.672;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=68;SRP=25.9689;SRR=35;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:60:47,0,0,13:47:1703:0,0,13:0,0,447:-18.0507,-32.1991,-169.09,-32.1991,-169.09,-169.09,0,-137.208,-137.208,-133.294 0|0:50:32,3,3,11:32:1159:3,3,11:106,78,385:-20.9487,-26.9378,-118.08,-24.6257,-113.024,-115.779,0,-88.4692,-86.1669,-88.8141 0|1:23:15,6,0,1:15:531:6,0,1:215,0,32:-2.77296,0,-41.4192,-7.28841,-43.2253,-50.5247,-4.71485,-40.6717,-47.9686,-47.6676 0|0:15:9,2,0,4:9:331:2,0,4:71,0,139:-8.17192,-8.48849,-34.9686,-10.8812,-35.5707,-37.9928,0,-24.8091,-27.2202,-26.0161 dDocent_Contig_15403 11 . T A 598.966 . AB=0.316456;ABP=26.1269;AC=3;AF=0.375;AN=8;AO=26;CIGAR=1X;DP=92;DPB=92;DPRA=0;EPP=59.4686;EPPR=146.327;GTI=0;LEN=1;MEANALT=1;MQM=57.3462;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.923077;PAIREDR=0.833333;PAO=0;PQA=0;PQR=0;PRO=0;QA=1030;QR=2646;RO=66;RPL=0;RPP=59.4686;RPPR=146.327;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=66;SRP=146.327;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:33:20,13:20:797:13:511:-35.2815,0,-62.1133 0/1:35:27,8:27:1087:8:319:-18.5408,0,-87.58 0/0:13:12,1:12:480:1:40:0,-1.04655,-40.684 0/1:11:7,4:7:282:4:160:-11.4721,0,-22.4418 dDocent_Contig_15404 183 . T G 126.787 . AB=0.5;ABP=3.0103;AC=1;AF=0.25;AN=4;AO=5;CIGAR=1X;DP=21;DPB=21;DPRA=0.909091;EPP=13.8677;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=46.6;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=193;QR=632;RO=16;RPL=5;RPP=13.8677;RPPR=37.7539;RPR=0;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=37.7539;SRR=16;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:5,5:5:197:5:193:-14.3777,0,-15.0952 0/0:11:11,0:11:435:0:0:0,-3.31133,-39.5026 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_15405 70 . T C 111.509 . AB=0.28;ABP=13.5202;AC=3;AF=0.375;AN=8;AO=7;CIGAR=1X;DP=37;DPB=37;DPRA=0.694444;EPP=18.2106;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.833333;PAO=0;PQA=0;PQR=0;PRO=0;QA=255;QR=1052;RO=30;RPL=7;RPP=18.2106;RPPR=68.1545;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:4:1,3:1:34:3:123:-10.2607,0,-2.19479 0/1:15:13,2:13:474:2:78:-2.88785,0,-38.4824 0/1:6:4,2:4:135:2:54:-3.31971,0,-10.6766 0/0:12:12,0:12:409:0:0:0,-3.61236,-37.1341 dDocent_Contig_15406 63 . C G 34.5998 . AB=0.5;ABP=3.0103;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X;DP=36;DPB=36;DPRA=0.375;EPP=7.35324;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.941176;PAO=0;PQA=0;PQR=0;PRO=0;QA=67;QR=1299;RO=34;RPL=2;RPP=7.35324;RPPR=76.8404;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:12:12,0:12:461:0:0:0,-3.61236,-41.8398 0/0:9:9,0:9:338:0:0:0,-2.70927,-30.7717 0/0:11:11,0:11:433:0:0:0,-3.31133,-39.3252 0/1:4:2,2:2:67:2:67:-5.15872,0,-5.15736 dDocent_Contig_15407 10 . C T 67.5576 . AB=0.272727;ABP=7.94546;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=79;DPB=79;DPRA=0.975;EPP=13.8677;EPPR=163.699;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.6;PAIREDR=0.445946;PAO=0;PQA=0;PQR=0;PRO=0;QA=205;QR=2963;RO=74;RPL=0;RPP=13.8677;RPPR=163.699;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=74;SRP=163.699;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:8,3:8:328:3:123:-8.15346,0,-26.579 0/0:30:30,0:30:1193:0:0:0,-9.0309,-107.641 0/0:28:26,2:26:1034:2:82:0,-0.649162,-85.5698 0/0:10:10,0:10:408:0:0:0,-3.0103,-37.0806 dDocent_Contig_15408 14 . T A 70.6387 . AB=0.2;ABP=18.6449;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=88;DPB=88;DPRA=2.14286;EPP=13.8677;EPPR=183.243;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=201;QR=3326;RO=83;RPL=0;RPP=13.8677;RPPR=183.243;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=83;SRP=183.243;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:40:39,1:39:1567:1:41:0,-7.94663,-137.169 0/0:6:6,0:6:243:0:0:0,-1.80618,-22.2476 0/0:22:22,0:22:874:0:0:0,-6.62266,-78.9634 0/1:20:16,4:16:642:4:160:-8.76283,0,-52.0941 dDocent_Contig_15409 29 . C G 113.599 . AB=0.24;ABP=17.6895;AC=2;AF=0.25;AN=8;AO=6;CIGAR=1X;DP=57;DPB=57;DPRA=0.78125;EPP=16.0391;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.823529;PAO=0;PQA=0;PQR=0;PRO=0;QA=239;QR=1966;RO=51;RPL=0;RPP=16.0391;RPPR=113.755;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:18:18,0:18:693:0:0:0,-5.41854,-62.6929 0/1:17:13,4:13:498:4:159:-9.57444,0,-40.0377 0/0:14:14,0:14:566:0:0:0,-4.21442,-51.2826 0/1:8:6,2:6:209:2:80:-5.18333,0,-16.7297 dDocent_Contig_15410 67 . G T 549.774 . AB=0.333333;ABP=10.9724;AC=5;AF=0.625;AN=8;AO=19;CIGAR=1X;DP=41;DPB=41;DPRA=0;EPP=44.2683;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=763;QR=838;RO=22;RPL=19;RPP=44.2683;RPPR=50.7827;RPR=0;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:14,6:14:527:6:243:-16.227,0,-41.742 1/1:8:0,8:0:0:8:318:-28.9846,-2.40824,0 0/1:7:6,1:6:229:1:41:-1.98736,0,-18.8648 0/1:6:2,4:2:82:4:161:-13.0693,0,-5.9735 dDocent_Contig_15411 69 . A C 118.366 . AB=0.3125;ABP=7.89611;AC=1;AF=0.25;AN=4;AO=5;CIGAR=1X;DP=27;DPB=27;DPRA=1.45455;EPP=13.8677;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=203;QR=884;RO=22;RPL=5;RPP=13.8677;RPPR=50.7827;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:11,0:11:437:0:0:0,-3.31133,-39.6859 0/1:16:11,5:11:447:5:203:-13.8366,0,-35.7696 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_15412 14 . T G 159.879 . AB=0.216216;ABP=28.8919;AC=2;AF=0.25;AN=8;AO=8;CIGAR=1X;DP=40;DPB=40;DPRA=12.3333;EPP=20.3821;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=317;QR=1225;RO=32;RPL=0;RPP=20.3821;RPPR=72.4974;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:11,1:11:434:1:41:-0.482207,0,-35.8 0/1:25:18,7:18:669:7:276:-17.6828,0,-53.0106 0/0:1:1,0:1:41:0:0:0,-0.30103,-4.09457 0/0:2:2,0:2:81:0:0:0,-0.60206,-7.68573 dDocent_Contig_15413 78 . T A 663.679 . AB=0.375;ABP=5.18177;AC=3;AF=0.5;AN=6;AO=21;CIGAR=1X;DP=40;DPB=40;DPRA=1.72222;EPP=48.6112;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=800;QR=737;RO=19;RPL=21;RPP=48.6112;RPPR=44.2683;RPR=0;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:9:9,0:9:350:0:0:0,-2.70927,-31.8614 0/1:16:10,6:10:387:6:230:-16.2502,0,-30.371 1/1:15:0,15:0:0:15:570:-51.6406,-4.51545,0 ./.:.:.:.:.:.:.:. dDocent_Contig_15414 96 . T C 112.853 . AB=0.5;ABP=3.0103;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=39;DPB=39;DPRA=0.689655;EPP=13.8677;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=172;QR=1125;RO=34;RPL=5;RPP=13.8677;RPPR=76.8404;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 0/1:10:5,5:5:168:5:172:-12.8082,0,-12.4411 0/0:17:17,0:17:542:0:0:0,-5.11751,-49.0834 0/0:12:12,0:12:415:0:0:0,-3.61236,-37.6822 dDocent_Contig_15416 75 . C T 1235.93 . AB=0.416667;ABP=5.9056;AC=5;AF=0.625;AN=8;AO=50;CIGAR=1X;DP=81;DPB=81;DPRA=0;EPP=111.584;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1688;QR=1041;RO=31;RPL=50;RPP=111.584;RPPR=70.3259;RPR=0;RUN=1;SAF=50;SAP=111.584;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:6,3:6:179:3:103:-6.90075,0,-13.693 0/1:28:19,9:19:653:9:313:-20.0782,0,-50.6636 1/1:33:3,30:3:105:30:994:-79.9649,-0.137828,0 0/1:11:3,8:3:104:8:278:-22.0467,0,-6.39176 dDocent_Contig_15417 12 . C A 116.737 . AB=0;ABP=0;AC=2;AF=0.25;AN=8;AO=3;CIGAR=1X;DP=39;DPB=39;DPRA=0.25;EPP=9.52472;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.916667;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=1454;RO=36;RPL=0;RPP=9.52472;RPPR=81.1833;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:19:19,0:19:768:0:0:0,-5.71957,-69.4412 1/1:3:0,3:0:0:3:122:-11.3725,-0.90309,0 0/0:11:11,0:11:444:0:0:0,-3.31133,-40.3145 0/0:6:6,0:6:242:0:0:0,-1.80618,-22.1571 dDocent_Contig_15419 115 . G T 229.546 . AB=0.288889;ABP=20.4303;AC=2;AF=0.25;AN=8;AO=13;CIGAR=1X;DP=48;DPB=48;DPRA=15;EPP=31.2394;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=436;QR=1209;RO=35;RPL=0;RPP=31.2394;RPPR=79.0118;RPR=13;RUN=1;SAF=0;SAP=31.2394;SAR=13;SRF=0;SRP=79.0118;SRR=35;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:11,6:11:380:6:207:-13.8507,0,-29.4151 0/1:28:21,7:21:724:7:229:-12.501,0,-57.0519 0/0:2:2,0:2:70:0:0:0,-0.60206,-6.6474 0/0:1:1,0:1:35:0:0:0,-0.30103,-3.49863 dDocent_Contig_15420 163 . C G 77.9774 . AB=0.6;ABP=3.44459;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=29;DPB=29;DPRA=0.625;EPP=9.52472;EPPR=43.4331;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=118;QR=1053;RO=26;RPL=3;RPP=9.52472;RPPR=43.4331;RPR=0;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=59.4686;SRR=26;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:2:2,0:2:82:0:0:0,-0.60206,-7.77968 0/1:5:2,3:2:82:3:118:-9.49643,0,-6.27453 0/0:11:11,0:11:449:0:0:0,-3.31133,-40.7659 0/0:11:11,0:11:440:0:0:0,-3.31133,-39.9543 dDocent_Contig_15422 11 . C T 63.482 . AB=0.210526;ABP=16.8392;AC=2;AF=0.25;AN=8;AO=4;CIGAR=1X;DP=102;DPB=102;DPRA=0.228916;EPP=11.6962;EPPR=213.643;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=0.989691;PAO=0;PQA=0;PQR=0;PRO=0;QA=163;QR=3913;RO=97;RPL=0;RPP=11.6962;RPPR=213.643;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=97;SRP=213.643;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:59:58,0:58:2353:0:0:0,-17.4597,-211.508 0/1:10:8,2:8:324:2:82:-4.76938,0,-26.5191 0/0:24:24,0:24:957:0:0:0,-7.22472,-86.4266 0/1:9:7,2:7:279:2:81:-4.97646,0,-22.7713 dDocent_Contig_15424 19 . T G 59.8738 . AB=0.333333;ABP=5.18177;AC=1;AF=0.25;AN=4;AO=3;CIGAR=1X2M1X;DP=15;DPB=15;DPRA=1.5;EPP=9.52472;EPPR=29.068;GTI=0;LEN=1;MEANALT=1;MQM=54;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=115;QR=482;RO=12;RPL=0;RPP=9.52472;RPPR=29.068;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=12;SRP=29.068;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:6:6,0:6:236:0:0:0,-1.80618,-21.6105 0|1:9:6,3:6:246:3:115:-7.98735,0,-19.8108 .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. dDocent_Contig_15425 12 . G A 3340 . AB=0.628205;ABP=25.2818;AC=6;AF=0.75;AN=8;AO=98;CIGAR=1X2M;DP=156;DPB=156;DPRA=0;EPP=215.815;EPPR=63.8115;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3880;QR=1091;RO=28;RPL=0;RPP=215.815;RPPR=63.8115;RPR=98;RUN=1;SAF=98;SAP=215.815;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:44:0,7,37:0:0:7,37:278,1458:-143.225,-120.338,-118.231,-23.2826,0,-12.1445 0|1:46:16,11,19:16:626:11,19:443,754:-57.2478,-25.5497,-73.7047,0,-14.9449,-45.7425 1|1:35:8,10,17:8:319:10,17:406,671:-60.0167,-28.9362,-52.198,-7.22091,0,-28.3711 0|1:31:4,2,25:4:146:2,25:78,997:-80.9083,-75.7015,-87.0211,0,-5.48979,-4.38393 dDocent_Contig_15427 10 . C T 52.4101 . AB=0.175439;ABP=159.471;AC=1;AF=0.125;AN=8;AO=89;CIGAR=1X;DP=602;DPB=602;DPRA=0;EPP=196.271;EPPR=1101.79;GTI=0;LEN=1;MEANALT=1.5;MQM=24.9326;MQMR=59.3039;NS=4;NUMALT=1;ODDS=2.77556e-17;PAIRED=0.235955;PAIREDR=0.841176;PAO=0;PQA=0;PQR=0;PRO=0;QA=3524;QR=20438;RO=510;RPL=0;RPP=196.271;RPPR=1110.46;RPR=89;RUN=1;SAF=89;SAP=196.271;SAR=0;SRF=509;SRP=1101.79;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:171:141,30:141:5661:30:1197:-6.63895,0,-455.248 0/0:142:122,18:122:4880:18:703:0,-11.7201,-405.919 0/0:189:158,31:158:6342:31:1230:0,-2.48428,-513.899 0/0:100:89,10:89:3555:10:394:0,-22.4596,-312.458 dDocent_Contig_15428 15 . A G 299.626 . AB=0.227273;ABP=45.6501;AC=3;AF=0.375;AN=8;AO=15;CIGAR=1X;DP=100;DPB=100;DPRA=0.647059;EPP=35.5824;EPPR=187.585;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=601;QR=3393;RO=85;RPL=0;RPP=35.5824;RPPR=187.585;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=85;SRP=187.585;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:11,6:11:449:6:242:-17.0394,0,-35.6484 0/0:34:34,0:34:1352:0:0:0,-10.235,-121.941 0/1:30:26,4:26:1035:4:160:-5.75269,0,-84.4143 0/1:19:14,5:14:557:5:199:-12.5684,0,-44.7497 dDocent_Contig_15432 14 . T A 322.042 . AB=0.302326;ABP=17.6046;AC=2;AF=0.25;AN=8;AO=14;CIGAR=1X;DP=89;DPB=89;DPRA=0.689655;EPP=33.4109;EPPR=165.871;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.928571;PAIREDR=0.8;PAO=0;PQA=0;PQR=0;PRO=0;QA=572;QR=2997;RO=75;RPL=0;RPP=33.4109;RPPR=165.871;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=75;SRP=165.871;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:29:29,0:29:1147:0:0:0,-8.72987,-103.498 0/0:17:16,1:16:645:1:41:0,-1.02294,-54.2883 0/1:31:20,11:20:806:11:449:-31.4339,0,-63.5231 0/1:12:10,2:10:399:2:82:-4.16732,0,-32.6566 dDocent_Contig_15433 161 . G A 88.0533 . AB=0.117647;ABP=24.5973;AC=3;AF=0.375;AN=8;AO=4;CIGAR=1X;DP=25;DPB=25;DPRA=3.16667;EPP=11.6962;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=161;QR=824;RO=21;RPL=4;RPP=11.6962;RPPR=48.6112;RPR=0;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=48.6112;SRR=21;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:15,2:15:583:2:79:-2.37973,0,-47.6883 1/1:2:0,2:0:0:2:82:-7.77968,-0.60206,0 0/0:5:5,0:5:200:0:0:0,-1.50515,-18.3795 0/0:1:1,0:1:41:0:0:0,-0.30103,-4.09457 dDocent_Contig_15434 62 . T A 204.468 . AB=0.473684;ABP=3.12459;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X;DP=81;DPB=81;DPRA=0.919355;EPP=22.5536;EPPR=159.356;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.888889;PAIREDR=0.986111;PAO=0;PQA=0;PQR=0;PRO=0;QA=306;QR=2602;RO=72;RPL=9;RPP=22.5536;RPPR=159.356;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=72;SRP=159.356;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:36:36,0:36:1306:0:0:0,-10.8371,-117.839 0/0:11:11,0:11:395:0:0:0,-3.31133,-35.8902 0/1:19:10,9:10:368:9:306:-22.1457,0,-27.7494 0/0:15:15,0:15:533:0:0:0,-4.51545,-48.2994 dDocent_Contig_15435 7 . A T 31.3582 . AB=0.133333;ABP=38.0434;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=155;DPB=155;DPRA=0.72;EPP=11.6962;EPPR=330.903;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=150;QR=5724;RO=151;RPL=0;RPP=11.6962;RPPR=330.903;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=151;SRP=330.903;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:44:44,0:44:1658:0:0:0,-13.2453,-149.486 0/1:30:26,4:26:980:4:150:-4.83447,0,-79.481 0/0:42:42,0:42:1596:0:0:0,-12.6433,-143.908 0/0:39:39,0:39:1490:0:0:0,-11.7402,-134.374 dDocent_Contig_15437 73 . G A 65.3778 . AB=0.210526;ABP=16.8392;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=60;DPB=60;DPRA=1.39024;EPP=11.6962;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.75;PAIREDR=0.678571;PAO=0;PQA=0;PQR=0;PRO=0;QA=151;QR=2109;RO=56;RPL=3;RPP=5.18177;RPPR=15.5738;RPR=1;RUN=1;SAF=3;SAP=5.18177;SAR=1;SRF=37;SRP=15.5738;SRR=19;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:29:29,0:29:1060:0:0:0,-8.72987,-95.6921 0/0:5:5,0:5:197:0:0:0,-1.50515,-18.1064 0/1:19:15,4:15:588:4:151:-8.23671,0,-47.5406 0/0:7:7,0:7:264:0:0:0,-2.10721,-24.1184 dDocent_Contig_15438 54 . T A 62.7364 . AB=0.162162;ABP=39.6906;AC=2;AF=0.25;AN=8;AO=8;CIGAR=1X2M1X;DP=69;DPB=69;DPRA=3.5;EPP=20.3821;EPPR=135.47;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=0;PAIREDR=0.754098;PAO=0;PQA=0;PQR=0;PRO=0;QA=280;QR=2199;RO=61;RPL=0;RPP=20.3821;RPPR=3.33068;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=29;SRP=3.33068;SRR=32;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:28:23,5:23:824:5:175:-7.66485,0,-66.046 0|0:6:6,0:6:223:0:0:0,-1.80618,-20.4281 0|0:26:24,2:24:853:2:70:0,-1.17938,-70.4324 0|1:9:8,1:8:299:1:35:-0.789359,0,-24.556 dDocent_Contig_15439 16 . G A 140.434 . AB=0.352941;ABP=6.20364;AC=2;AF=0.25;AN=8;AO=7;CIGAR=1X;DP=41;DPB=41;DPRA=1.94444;EPP=18.2106;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=283;QR=1332;RO=34;RPL=0;RPP=18.2106;RPPR=76.8404;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:6:4,2:4:162:2:80:-5.78561,0,-13.1608 0/1:11:7,4:7:250:4:162:-11.6556,0,-19.5265 0/0:18:17,1:17:678:1:41:0,-1.32397,-57.2522 0/0:6:6,0:6:242:0:0:0,-1.80618,-22.1573 dDocent_Contig_15440 23 . T A 132.959 . AB=0.205128;ABP=32.4644;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X;DP=87;DPB=87;DPRA=5.69231;EPP=22.5536;EPPR=172.385;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=329;QR=3128;RO=78;RPL=0;RPP=22.5536;RPPR=172.385;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=78;SRP=172.385;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:39:31,8:31:1239:8:290:-14.6937,0,-100.037 0/0:35:34,1:34:1365:1:39:0,-6.63949,-119.206 0/0:10:10,0:10:403:0:0:0,-3.0103,-36.6283 0/0:3:3,0:3:121:0:0:0,-0.90309,-11.2802 dDocent_Contig_15442 104 . N A 232.971 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=7;CIGAR=4X2I1M1X;DP=7;DPB=9.33333;DPRA=0;EPP=18.2106;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=50.5714;MQMR=0;NS=1;NUMALT=1;ODDS=9.4572;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=257;QR=0;RO=0;RPL=0;RPP=18.2106;RPPR=0;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. 1|1:7:0,7:0:0:7:257:-23.297,-2.10721,0 .:.:.:.:.:.:.:. dDocent_Contig_15443 26 . C A 1711.45 . AB=0.619565;ABP=14.4341;AC=3;AF=0.375;AN=8;AO=57;CIGAR=1X;DP=132;DPB=132;DPRA=0.766667;EPP=126.784;EPPR=165.871;GTI=0;LEN=1;MEANALT=1;MQM=59.8421;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.929825;PAIREDR=0.96;PAO=0;PQA=0;PQR=0;PRO=0;QA=2259;QR=3021;RO=75;RPL=0;RPP=126.784;RPPR=165.871;RPR=57;RUN=1;SAF=57;SAP=126.784;SAR=0;SRF=75;SRP=165.871;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:16,13:16:646:13:519:-38.3249,0,-49.7433 0/0:40:40,0:40:1616:0:0:0,-12.0412,-145.666 0/1:49:14,35:14:566:35:1379:-109.579,0,-36.5312 0/1:14:5,9:5:193:9:361:-28.6392,0,-13.5249 dDocent_Contig_15444 12 . C A 73.2777 . AB=0.185185;ABP=26.2531;AC=3;AF=0.375;AN=8;AO=5;CIGAR=1X;DP=31;DPB=31;DPRA=2.25;EPP=13.8677;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=58.8;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.8;PAIREDR=0.653846;PAO=0;PQA=0;PQR=0;PRO=0;QA=196;QR=1053;RO=26;RPL=0;RPP=13.8677;RPPR=59.4686;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:4:4,0:4:162:0:0:0,-1.20412,-14.967 0/1:11:10,1:10:408:1:39:-0.585235,0,-33.769 0/1:10:9,1:9:364:1:41:-1.06846,0,-30.1136 0/1:6:3,3:3:119:3:116:-9.0101,0,-9.28883 dDocent_Contig_15445 60 . C G 115.529 . AB=0.176471;ABP=49.3776;AC=4;AF=0.5;AN=8;AO=9;CIGAR=1X;DP=51;DPB=51;DPRA=0;EPP=22.5536;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.555556;PAIREDR=0.666667;PAO=0;PQA=0;PQR=0;PRO=0;QA=363;QR=1688;RO=42;RPL=9;RPP=22.5536;RPPR=94.2121;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:15,2:15:605:2:81:-2.56822,0,-49.6694 0/1:9:7,2:7:280:2:81:-4.97646,0,-22.8614 0/1:5:4,1:4:162:1:41:-2.58942,0,-13.4618 0/1:20:16,4:16:641:4:160:-8.76283,0,-52.0034 dDocent_Contig_15446 13 . G A 2019.69 . AB=0.48951;ABP=3.14697;AC=4;AF=0.5;AN=8;AO=70;CIGAR=1X;DP=143;DPB=143;DPRA=0;EPP=155.013;EPPR=161.528;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2790;QR=2936;RO=73;RPL=0;RPP=155.013;RPPR=161.528;RPR=70;RUN=1;SAF=70;SAP=155.013;SAR=0;SRF=73;SRP=161.528;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:56:20,36:20:804:36:1423:-111.465,0,-55.8154 0/1:36:19,17:19:764:17:682:-50.8718,0,-58.2422 0/1:27:18,9:18:721:9:359:-24.5455,0,-57.0887 0/1:24:16,8:16:647:8:326:-22.4851,0,-51.3387 dDocent_Contig_15447 13 . C G 166.772 . AB=0.204082;ABP=40.2799;AC=2;AF=0.25;AN=8;AO=10;CIGAR=1X;DP=91;DPB=91;DPRA=1.16667;EPP=24.725;EPPR=178.9;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.975309;PAO=0;PQA=0;PQR=0;PRO=0;QA=379;QR=3284;RO=81;RPL=0;RPP=24.725;RPPR=178.9;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=81;SRP=178.9;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:30:30,0:30:1212:0:0:0,-9.0309,-109.351 0/1:19:13,6:13:528:6:238:-16.0714,0,-42.1473 0/1:30:26,4:26:1059:4:141:-4.0027,0,-86.5656 0/0:12:12,0:12:485:0:0:0,-3.61236,-44.0012 dDocent_Contig_15448 56 . T A 555.271 . AB=0.4;ABP=7.78754;AC=2;AF=0.25;AN=8;AO=24;CIGAR=1X;DP=109;DPB=109;DPRA=1.0641;EPP=55.1256;EPPR=170.622;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.4;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.988235;PAO=0;PQA=0;PQR=0;PRO=0;QA=910;QR=3386;RO=85;RPL=24;RPP=55.1256;RPPR=170.622;RPR=0;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=85;SRP=187.585;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:26:26,0:26:1044:0:0:0,-7.82678,-91.9046 0/1:36:18,18:18:704:18:679:-50.598,0,-52.8477 0/1:19:15,4:15:598:4:152:-8.32691,0,-48.4234 0/0:28:26,2:26:1040:2:79:0,-0.931208,-86.3948 dDocent_Contig_15449 7 . A T 230.22 . AB=0.363636;ABP=4.78696;AC=3;AF=0.375;AN=8;AO=8;CIGAR=1X;DP=32;DPB=32;DPRA=0.882353;EPP=20.3821;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=300;QR=908;RO=24;RPL=0;RPP=20.3821;RPPR=55.1256;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:4:0,4:0:0:4:151:-13.9578,-1.20412,0 0/0:14:14,0:14:523:0:0:0,-4.21442,-47.4048 0/1:11:7,4:7:268:4:149:-10.462,0,-21.1725 0/0:3:3,0:3:117:0:0:0,-0.90309,-10.9104 dDocent_Contig_15452 107 . N A 1284.12 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=40;CIGAR=1X;DP=40;DPB=40;DPRA=0;EPP=89.8692;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1405;QR=0;RO=0;RPL=0;RPP=89.8692;RPPR=0;RPR=40;RUN=1;SAF=0;SAP=89.8692;SAR=40;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:18:0,18:0:0:18:620:-56.1228,-5.41854,0 1/1:15:0,15:0:0:15:535:-48.4847,-4.51545,0 1/1:5:0,5:0:0:5:179:-16.4604,-1.50515,0 1/1:2:0,2:0:0:2:71:-6.74206,-0.60206,0 dDocent_Contig_15453 125 . A T 345.566 . AB=0.142857;ABP=18.5208;AC=0;AF=0;AN=8;AO=2;CIGAR=2X1M1X;DP=36;DPB=36;DPRA=3.5;EPP=7.35324;EPPR=48.6112;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=746;RO=21;RPL=0;RPP=7.35324;RPPR=48.6112;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=48.6112;SRR=21;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:14:5,2,7:5:179:2,7:82,273:-20.9206,-15.6532,-29.6353,0,-7.77762,-12.4533 0|0:6:6,0,0:6:215:0,0:0,0:0,-1.80618,-19.6992,-1.80618,-19.6992,-19.6992 0|0:14:8,0,6:8:283:0,6:0,232:-17.0334,-19.4416,-42.4735,0,-23.4042,-21.598 0|0:2:2,0,0:2:69:0,0:0,0:0,-0.60206,-6.55254,-0.60206,-6.55254,-6.55254 dDocent_Contig_15454 32 . G A 1042.89 . AB=0.217391;ABP=18.9659;AC=4;AF=0.666667;AN=6;AO=33;CIGAR=1X;DP=51;DPB=51;DPRA=0;EPP=74.6689;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1261;QR=709;RO=18;RPL=0;RPP=74.6689;RPPR=42.0968;RPR=33;RUN=1;SAF=33;SAP=74.6689;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:28:0,28:0:0:28:1095:-98.836,-8.42884,0 0/1:10:8,2:8:314:2:50:-1.73454,0,-25.6141 0/1:13:10,3:10:395:3:116:-6.90339,0,-31.995 ./.:.:.:.:.:.:.:. dDocent_Contig_15455 107 . N A 269.086 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=8;CIGAR=1X;DP=8;DPB=8;DPRA=0;EPP=20.3821;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=277;QR=0;RO=0;RPL=0;RPP=20.3821;RPPR=0;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:67:-6.36314,-0.60206,0 1/1:1:0,1:0:0:1:35:-3.49863,-0.30103,0 1/1:2:0,2:0:0:2:70:-6.6474,-0.60206,0 1/1:3:0,3:0:0:3:105:-9.79616,-0.90309,0 dDocent_Contig_15459 61 . T A 127.953 . AB=0.153846;ABP=30.0702;AC=4;AF=0.5;AN=8;AO=4;CIGAR=6M1X1M1X;DP=30;DPB=30.2222;DPRA=6.5;EPP=11.6962;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=158;QR=911;RO=24;RPL=4;RPP=11.6962;RPPR=55.1256;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:14:11,0,3:11:398:0,3:0,119:-6.88097,-10.1923,-42.6432,0,-32.8397,-31.9366 0|1:12:11,0,1:11:434:0,1:0,39:-0.284205,-3.59553,-39.309,0,-36.1035,-35.8025 1|1:2:0,2,0:0:0:2,0:77,0:-7.30914,-0.60206,0,-7.30914,-0.60206,-7.30914 0|0:2:2,0,0:2:79:0,0:0,0:0,-0.60206,-7.49763,-0.60206,-7.49763,-7.49763 dDocent_Contig_15460 14 . G A 34.7292 . AB=0.285714;ABP=5.80219;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X3M2X2M1X2M1X2M1X;DP=45;DPB=45;DPRA=0.552632;EPP=7.35324;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=40;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=79;QR=1628;RO=42;RPL=0;RPP=7.35324;RPPR=94.2121;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:7:5,2:5:197:2:79:-4.87065,0,-15.9989 0|0:14:13,0:13:510:0:0:0,-3.91339,-45.985 0|0:20:20,0:20:762:0:0:0,-6.0206,-68.9017 0|0:4:4,0:4:159:0:0:0,-1.20412,-14.6923 dDocent_Contig_15461 14 . A G 2423.89 . AB=0.661157;ABP=30.3062;AC=4;AF=0.5;AN=8;AO=80;CIGAR=1X;DP=121;DPB=121;DPRA=0;EPP=176.728;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.8375;PAIREDR=0.780488;PAO=0;PQA=0;PQR=0;PRO=0;QA=3166;QR=1634;RO=41;RPL=0;RPP=176.728;RPPR=92.0407;RPR=80;RUN=1;SAF=80;SAP=176.728;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:37:8,29:8:323:29:1155:-93.092,0,-18.3011 0/1:34:20,14:20:795:14:556:-40.146,0,-61.6312 0/1:36:6,30:6:234:30:1173:-95.0111,0,-10.5925 0/1:14:7,7:7:282:7:282:-21.5382,0,-21.5385 dDocent_Contig_15463 18 . T C 84.5151 . AB=0.25;ABP=11.6962;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=58;DPB=58;DPRA=1.14286;EPP=11.6962;EPPR=120.27;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=162;QR=2137;RO=54;RPL=0;RPP=11.6962;RPPR=120.27;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:15:15,0:15:590:0:0:0,-4.51545,-53.436 0/0:18:18,0:18:714:0:0:0,-5.41854,-64.588 0/1:16:12,4:12:481:4:162:-10.1505,0,-38.8233 0/0:9:9,0:9:352:0:0:0,-2.70927,-32.0393 dDocent_Contig_15464 23 . C A 274.188 . AB=0.237288;ABP=38.3795;AC=4;AF=0.5;AN=8;AO=14;CIGAR=1X;DP=59;DPB=59;DPRA=0;EPP=33.4109;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=58.8667;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.466667;PAO=0;PQA=0;PQR=0;PRO=0;QA=567;QR=1809;RO=45;RPL=0;RPP=33.4109;RPPR=100.727;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:7:5,2:5:202:2:78:-5.29609,0,-16.4549 0/1:13:10,3:10:409:3:121:-7.36681,0,-33.2572 0/1:16:11,5:11:431:5:204:-13.9276,0,-33.6875 0/1:23:19,4:19:767:4:164:-8.22621,0,-62.372 dDocent_Contig_15465 10 . A G 788.332 . AB=0.189873;ABP=69.0066;AC=4;AF=0.5;AN=8;AO=15;CIGAR=2X3M1X;DP=79;DPB=79;DPRA=0;EPP=35.5824;EPPR=74.6689;GTI=0;LEN=1;MEANALT=2.25;MQM=59.9333;MQMR=60;NS=4;NUMALT=3;ODDS=1.38778e-17;PAIRED=0.6;PAIREDR=0.909091;PAO=0;PQA=0;PQR=0;PRO=0;QA=596;QR=1304;RO=33;RPL=0;RPP=35.5824;RPPR=74.6689;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:16:2,12,2,0:2:80:12,2,0:456,80,0:-36.6618,0,-2.97783,-30.6717,-0.00105627,-36.6628,-37.2638,-6.59019,-37.2649,-43.8563 0|1:27:10,10,7,0:10:390:10,7,0:397,278,0:-29.6035,0,-29.0412,-9.72625,-9.1614,-39.6716,-32.6138,-32.0515,-41.7788,-64.667 0|1:15:9,3,1,2:9:356:3,1,2:120,40,78:-7.17907,0,-28.3973,-6.5926,-26.0049,-35.59,-3.48005,-22.8898,-29.4804,-32.1737 0|1:21:12,4,5,0:12:478:4,5,0:161,198,0:-12.6809,-3.02107,-41.1812,0,-26.0891,-37.8543,-16.2933,-42.3853,-39.3595,-55.6555 dDocent_Contig_15466 1 . N G 75.9266 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=80;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:80:-7.59157,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_15467 116 . T G 78.5798 . AB=0.444444;ABP=3.25157;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=50;DPB=50;DPRA=0.439024;EPP=11.6962;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=134;QR=1469;RO=46;RPL=0;RPP=11.6962;RPPR=102.898;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=102.898;SRR=46;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:31:31,0:31:971:0:0:0,-9.33193,-87.6746 ./.:.:.:.:.:.:.:. 0/1:9:5,4:5:156:4:134:-9.68189,0,-11.6391 0/0:10:10,0:10:342:0:0:0,-3.0103,-31.1109 dDocent_Contig_15468 35 . G T 235.12 . AB=0.120219;ABP=232.273;AC=3;AF=0.375;AN=8;AO=25;CIGAR=1X3M;DP=255;DPB=255;DPRA=0;EPP=57.2971;EPPR=474.22;GTI=0;LEN=1;MEANALT=2;MQM=58.4;MQMR=60;NS=4;NUMALT=2;ODDS=2.77556e-17;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1013;QR=8452;RO=217;RPL=0;RPP=57.2971;RPPR=474.22;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=217;SRP=474.22;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:69:58,4,7:58:2278:4,7:161,285:-6.05375,-10.2458,-196.377,0,-174.069,-185.232 0|0:72:69,0,3:69:2669:0,3:0,121:0,-20.7711,-239.962,-10.3942,-229.987,-229.084 0|1:72:55,3,11:55:2131:3,11:112,444:-19.9258,-27.3189,-201.453,0,-165.884,-171.74 0|1:42:35,3,4:35:1374:3,4:119,163:-2.91741,-3.66238,-115.741,0,-103.195,-111.787 dDocent_Contig_15469 7 . A T 231.893 . AB=0.158416;ABP=105.37;AC=2;AF=0.25;AN=8;AO=24;CIGAR=1X2M;DP=260;DPB=260;DPRA=0;EPP=55.1256;EPPR=502.449;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=1.38778e-17;PAIRED=0.708333;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=917;QR=8770;RO=230;RPL=0;RPP=55.1256;RPPR=502.449;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=230;SRP=502.449;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:99:96,0,3,0:96:3660:0,3,0:0,114,0:0,-28.8989,-329.148,-19.1698,-319.799,-318.896,-28.8989,-329.148,-319.799,-329.148 0|1:80:64,1,14,1:64:2432:1,14,1:39,536,39:-24.7156,-40.7752,-239.919,0,-196.232,-195.223,-40.7752,-237.014,-196.232,-239.919 0|0:60:55,0,5,0:55:2106:0,5,0:0,189,0:0,-16.5566,-189.396,-0.686407,-173.904,-172.399,-16.5566,-189.396,-173.904,-189.396 0|1:21:15,2,2,2:15:572:2,2,2:77,78,76:-1.89879,-0.0918483,-46.4123,0,-40.6016,-46.3224,-0.18383,-40.7817,-40.6917,-46.5023 dDocent_Contig_15470 16 . C T 282.765 . AB=0.177778;ABP=43.5927;AC=2;AF=0.25;AN=8;AO=8;CIGAR=1X3M2D8M3X;DP=61;DPB=60.0588;DPRA=0;EPP=20.3821;EPPR=89.8692;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0.8;PAO=0;PQA=0;PQR=0;PRO=0;QA=285;QR=1565;RO=40;RPL=0;RPP=20.3821;RPPR=89.8692;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:16:9,0,7:9:359:0,7:0,255:-18.4737,-21.1829,-50.7689,0,-29.965,-27.8578 0|0:24:18,2,3:18:699:2,3:79,116:-4.10242,-3.01917,-59.8473,0,-50.9221,-56.5205 0|1:17:12,4,1:12:470:4,1:135,40:-7.27679,0,-37.4354,-7.58161,-35.3438,-45.9682 1|0:4:1,2,1:1:37:2,1:71,40:-5.75051,-0.29785,-2.70791,-2.74152,0,-5.47251 dDocent_Contig_15471 14 . A C 58.1749 . AB=0.181818;ABP=22.3561;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=96;DPB=96;DPRA=0.891892;EPP=11.6962;EPPR=202.786;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=0.75;PAIREDR=0.565217;PAO=0;PQA=0;PQR=0;PRO=0;QA=153;QR=3654;RO=92;RPL=0;RPP=11.6962;RPPR=202.786;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=92;SRP=202.786;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:40:40,0:40:1576:0:0:0,-12.0412,-142.073 0/1:22:18,4:18:708:4:153:-7.51646,0,-57.4198 0/0:22:22,0:22:884:0:0:0,-6.62266,-79.8691 0/0:12:12,0:12:486:0:0:0,-3.61236,-44.0913 dDocent_Contig_15472 34 . G A 33.906 . AB=0.285714;ABP=5.80219;AC=1;AF=0.25;AN=4;AO=2;CIGAR=1X;DP=20;DPB=20;DPRA=0.538462;EPP=7.35324;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.777778;PAO=0;PQA=0;PQR=0;PRO=0;QA=79;QR=693;RO=18;RPL=0;RPP=7.35324;RPPR=42.0968;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:13:13,0:13:492:0:0:0,-3.91339,-44.6151 ./.:.:.:.:.:.:.:. 0/1:7:5,2:5:201:2:79:-5.39042,0,-16.3639 ./.:.:.:.:.:.:.:. dDocent_Contig_15473 108 . A G 116.437 . AB=0.833333;ABP=8.80089;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=39;DPB=39;DPRA=0.363636;EPP=13.8677;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=162;QR=1152;RO=34;RPL=0;RPP=13.8677;RPPR=76.8404;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=76.8404;SRR=34;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:27:27,0:27:907:0:0:0,-8.12781,-81.9371 0/1:6:1,5:1:35:5:162:-13.094,0,-1.69245 0/0:6:6,0:6:210:0:0:0,-1.80618,-19.2425 ./.:.:.:.:.:.:.:. dDocent_Contig_15474 25 . A T 235.919 . AB=0.391304;ABP=5.3706;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X;DP=78;DPB=78;DPRA=1.25455;EPP=22.5536;EPPR=152.842;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.84058;PAO=0;PQA=0;PQR=0;PRO=0;QA=354;QR=2754;RO=69;RPL=0;RPP=22.5536;RPPR=152.842;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=69;SRP=152.842;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:21:21,0:21:835:0:0:0,-6.32163,-75.4579 0/0:23:23,0:23:916:0:0:0,-6.92369,-82.7434 0/1:23:14,9:14:563:9:354:-25.2909,0,-44.089 0/0:11:11,0:11:440:0:0:0,-3.31133,-39.9538 dDocent_Contig_15475 82 . T G 334.127 . AB=0.454545;ABP=3.60252;AC=3;AF=0.5;AN=6;AO=15;CIGAR=1X1M3X;DP=33;DPB=33;DPRA=0;EPP=35.5824;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=57.1765;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.823529;PAO=0;PQA=0;PQR=0;PRO=0;QA=532;QR=589;RO=17;RPL=15;RPP=35.5824;RPPR=39.9253;RPR=0;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=0;SRP=39.9253;SRR=17;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:8:4,4:4:135:4:138:-10.3518,0,-10.0751 0|1:15:8,6:8:281:6:215:-15.1337,0,-20.9075 0|1:10:5,5:5:173:5:179:-13.4501,0,-12.8999 .:.:.:.:.:.:.:. dDocent_Contig_15476 18 . T A 441.514 . AB=0.170886;ABP=151.66;AC=3;AF=0.375;AN=8;AO=34;CIGAR=1X2M1X;DP=261;DPB=261;DPRA=0;EPP=76.8404;EPPR=474.22;GTI=0;LEN=1;MEANALT=2.75;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.852941;PAIREDR=0.788018;PAO=0;PQA=0;PQR=0;PRO=0;QA=1329;QR=8527;RO=217;RPL=0;RPP=76.8404;RPPR=474.22;RPR=34;RUN=1;SAF=34;SAP=76.8404;SAR=0;SRF=217;SRP=474.22;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:59:48,6,3:48:1905:6,3:240,122:-5.31723,0,-155.002,-9.70197,-146.744,-165.611 0|1:59:44,14,0:44:1724:14,0:548,0:-31.7931,0,-137.526,-45.0385,-141.741,-186.796 0|0:103:92,7,1:92:3616:7,1:273,40:0,-5.21397,-300.591,-24.3963,-299.403,-321.541 0|1:40:33,7,0:33:1282:7,0:268,0:-12.4389,0,-103.616,-22.3729,-105.723,-127.713 dDocent_Contig_15477 79 . C T 306.452 . AB=0.347826;ABP=12.2627;AC=3;AF=0.375;AN=8;AO=17;CIGAR=1X;DP=64;DPB=64;DPRA=0;EPP=39.9253;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.352941;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=568;QR=1581;RO=47;RPL=17;RPP=39.9253;RPPR=105.07;RPR=0;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:18,8:18:622:8:269:-16.7108,0,-48.4781 0/1:12:5,7:5:174:7:229:-17.3191,0,-12.3896 0/0:18:17,1:17:553:1:35:0,-1.91991,-46.5789 0/1:8:7,1:7:232:1:35:-1.09039,0,-18.7962 dDocent_Contig_15478 43 . C T 1496.6 . AB=0.5;ABP=3.0103;AC=5;AF=0.625;AN=8;AO=54;CIGAR=1X;DP=100;DPB=100;DPRA=0;EPP=120.27;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2016;QR=1810;RO=46;RPL=0;RPP=120.27;RPPR=102.898;RPR=54;RUN=1;SAF=54;SAP=120.27;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:7,13:7:279:13:503:-39.5874,0,-19.4605 0/1:27:16,11:16:622:11:379:-26.2936,0,-48.1802 0/1:45:23,22:23:909:22:818:-60.3737,0,-68.5707 1/1:8:0,8:0:0:8:316:-28.8034,-2.40824,0 dDocent_Contig_15479 59 . G A 437.642 . AB=0.470588;ABP=3.26577;AC=2;AF=0.333333;AN=6;AO=16;CIGAR=1X;DP=36;DPB=36;DPRA=8.5;EPP=37.7539;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=631;QR=755;RO=20;RPL=16;RPP=37.7539;RPPR=46.4397;RPR=0;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:9,6:9:330:6:241:-17.5509,0,-25.5301 0/1:19:9,10:9:347:10:390:-29.7359,0,-25.8688 0/0:2:2,0:2:78:0:0:0,-0.60206,-7.40347 ./.:.:.:.:.:.:.:. dDocent_Contig_15480 12 . T C 327.598 . AB=0.254237;ABP=33.963;AC=4;AF=0.5;AN=8;AO=15;CIGAR=1X;DP=59;DPB=59;DPRA=0;EPP=35.5824;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=606;QR=1752;RO=44;RPL=0;RPP=35.5824;RPPR=98.5551;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:6,8:6:241:8:320:-24.9518,0,-17.8523 0/1:17:14,3:14:553:3:123:-6.34728,0,-44.9934 0/1:15:12,3:12:487:3:122:-6.85704,0,-39.6656 0/1:13:12,1:12:471:1:41:-0.181177,0,-38.8247 dDocent_Contig_15481 107 . N A 421.274 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=13;CIGAR=1X;DP=13;DPB=13;DPRA=0;EPP=31.2394;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=450;QR=0;RO=0;RPL=0;RPP=31.2394;RPPR=0;RPR=13;RUN=1;SAF=0;SAP=31.2394;SAR=13;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:1:0,1:0:0:1:35:-3.49863,-0.30103,0 1/1:4:0,4:0:0:4:137:-12.6681,-1.20412,0 1/1:8:0,8:0:0:8:278:-25.358,-2.40824,0 dDocent_Contig_15482 44 . T C 341.405 . AB=0.269231;ABP=27.0635;AC=1;AF=0.125;AN=8;AO=14;CIGAR=1X;DP=118;DPB=118;DPRA=2.36364;EPP=33.4109;EPPR=228.843;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=565;QR=4135;RO=104;RPL=0;RPP=33.4109;RPPR=228.843;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=104;SRP=228.843;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:52:38,14:38:1498:14:565:-35.5384,0,-119.411 0/0:47:47,0:47:1886:0:0:0,-14.1484,-169.938 0/0:8:8,0:8:324:0:0:0,-2.40824,-29.5292 0/0:11:11,0:11:427:0:0:0,-3.31133,-38.7769 dDocent_Contig_15483 7 . A G 739.432 . AB=0.455556;ABP=4.55446;AC=4;AF=0.5;AN=8;AO=41;CIGAR=1X;DP=90;DPB=90;DPRA=0;EPP=92.0407;EPPR=107.241;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.756098;PAIREDR=0.6875;PAO=0;PQA=0;PQR=0;PRO=0;QA=1192;QR=1856;RO=48;RPL=0;RPP=92.0407;RPPR=107.241;RPR=41;RUN=1;SAF=41;SAP=92.0407;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:15,5:15:582:5:157:-8.4156,0,-46.7025 0/1:14:6,8:6:234:8:191:-13.2085,0,-17.2167 0/1:33:18,15:18:691:15:451:-30.9387,0,-52.5903 0/1:23:9,13:9:349:13:393:-28.7783,0,-24.8844 dDocent_Contig_15484 19 . G T 32.1948 . AB=0.285714;ABP=5.80219;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=40;DPB=40;DPRA=1.10526;EPP=9.52472;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=115;QR=1453;RO=37;RPL=0;RPP=9.52472;RPPR=83.3548;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:18:18,0:18:695:0:0:0,-5.41854,-62.8601 0/0:1:1,0:1:38:0:0:0,-0.30103,-3.79727 0/0:14:13,1:13:526:1:41:0,-0.119853,-43.5922 0/1:7:5,2:5:194:2:74:-4.91681,0,-15.7233 dDocent_Contig_15485 75 . T A 1803.26 . AB=0.568807;ABP=7.4927;AC=2;AF=0.333333;AN=6;AO=62;CIGAR=1X;DP=111;DPB=111;DPRA=27.25;EPP=137.642;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2401;QR=1867;RO=49;RPL=62;RPP=137.642;RPPR=109.412;RPR=0;RUN=1;SAF=62;SAP=137.642;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:67:36,31:36:1388:31:1200:-88.1132,0,-105.021 ./.:.:.:.:.:.:.:. 0/1:42:11,31:11:410:31:1201:-95.7351,0,-24.6005 0/0:2:2,0:2:69:0:0:0,-0.60206,-6.54958 dDocent_Contig_15486 13 . C T 292.91 . AB=0.407407;ABP=5.02092;AC=2;AF=0.25;AN=8;AO=11;CIGAR=1X;DP=73;DPB=73;DPRA=0.586957;EPP=26.8965;EPPR=137.642;GTI=0;LEN=1;MEANALT=1;MQM=58.7273;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.774194;PAO=0;PQA=0;PQR=0;PRO=0;QA=446;QR=2485;RO=62;RPL=0;RPP=26.8965;RPPR=137.642;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:36:36,0:36:1449:0:0:0,-10.8371,-130.654 0/1:16:12,4:12:486:4:163:-10.2419,0,-39.2737 0/1:11:4,7:4:160:7:283:-22.447,0,-11.4716 0/0:10:10,0:10:390:0:0:0,-3.0103,-35.4557 dDocent_Contig_15487 51 . C T 1116.43 . AB=0.283422;ABP=79.1976;AC=4;AF=0.5;AN=8;AO=53;CIGAR=1X;DP=187;DPB=187;DPRA=0;EPP=118.098;EPPR=293.988;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.962687;PAO=0;PQA=0;PQR=0;PRO=0;QA=1933;QR=4887;RO=134;RPL=53;RPP=118.098;RPPR=293.988;RPR=0;RUN=1;SAF=53;SAP=118.098;SAR=0;SRF=134;SRP=293.988;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:67:52,15:52:1919:15:538:-28.5855,0,-152.779 0/1:61:34,27:34:1275:27:992:-71.2338,0,-96.6736 0/1:35:30,5:30:1062:5:185:-6.47397,0,-85.3331 0/1:24:18,6:18:631:6:218:-12.7481,0,-49.8858 dDocent_Contig_15492 21 . C T 42.7462 . AB=0.333333;ABP=4.45795;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X;DP=61;DPB=61;DPRA=0.327273;EPP=3.0103;EPPR=131.127;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=2338;RO=59;RPL=0;RPP=7.35324;RPPR=131.127;RPR=2;RUN=1;SAF=1;SAP=3.0103;SAR=1;SRF=59;SRP=131.127;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:26:26,0:26:1031:0:0:0,-7.82678,-93.0843 0/0:25:25,0:25:988:0:0:0,-7.52575,-89.2181 0/1:6:4,2:4:156:2:82:-5.9735,0,-12.6103 0/0:4:4,0:4:163:0:0:0,-1.20412,-15.0584 dDocent_Contig_15493 27 . G A 140.497 . AB=0.375;ABP=5.18177;AC=2;AF=0.25;AN=8;AO=6;CIGAR=1X;DP=27;DPB=27;DPRA=1.45455;EPP=16.0391;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=235;QR=817;RO=21;RPL=0;RPP=16.0391;RPPR=48.6112;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:4:4,0:4:153:0:0:0,-1.20412,-14.1379 0/1:9:8,1:8:319:1:41:-1.3853,0,-26.3671 0/1:7:2,5:2:72:5:194:-15.7228,0,-4.72803 0/0:7:7,0:7:273:0:0:0,-2.10721,-24.93 dDocent_Contig_15494 91 . C T 39.7777 . AB=0.142857;ABP=41.7866;AC=2;AF=0.25;AN=8;AO=5;CIGAR=1X;DP=40;DPB=40;DPRA=7;EPP=13.8677;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=171;QR=972;RO=35;RPL=5;RPP=13.8677;RPPR=79.0118;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:12,3:12:358:3:106:-5.37371,0,-27.9963 0/1:20:18,2:18:448:2:65:-0.152847,0,-34.5429 0/0:3:3,0:3:101:0:0:0,-0.90309,-9.42373 0/0:2:2,0:2:65:0:0:0,-0.60206,-6.17345 dDocent_Contig_15495 35 . C T 32.0926 . AB=0;ABP=0;AC=4;AF=0.5;AN=8;AO=9;CIGAR=1X;DP=23;DPB=23;DPRA=0;EPP=22.5536;EPPR=33.4109;GTI=0;LEN=1;MEANALT=1;MQM=7;MQMR=7;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=355;QR=520;RO=14;RPL=0;RPP=22.5536;RPPR=33.4109;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=14;SRP=33.4109;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:9:8,1:8:307:1:40:0,-2.00944,-4.40694 1/1:2:0,2:0:0:2:74:-1.32918,-0.60206,0 0/0:8:5,3:5:175:3:122:0,-0.448661,-1.23494 1/1:4:1,3:1:38:3:119:-1.25974,-0.504396,0 dDocent_Contig_15497 52 . T C 69.6469 . AB=0.3;ABP=6.48466;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=20;DPB=20;DPRA=3;EPP=9.52472;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=655;RO=17;RPL=3;RPP=9.52472;RPPR=39.9253;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:7,3:7:273:3:122:-8.36219,0,-21.9233 0/0:5:5,0:5:205:0:0:0,-1.50515,-18.835 0/0:3:3,0:3:104:0:0:0,-0.90309,-9.69748 0/0:2:2,0:2:73:0:0:0,-0.60206,-6.92919 dDocent_Contig_15498 17 . T C 855.145 . AB=0.476923;ABP=3.31097;AC=3;AF=0.375;AN=8;AO=31;CIGAR=1X;DP=79;DPB=79;DPRA=1.54762;EPP=70.3259;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1215;QR=1934;RO=48;RPL=0;RPP=70.3259;RPPR=107.241;RPR=31;RUN=1;SAF=31;SAP=70.3259;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:38:15,23:15:608:23:897:-69.5945,0,-43.619 0/0:14:14,0:14:571:0:0:0,-4.21442,-51.7319 0/1:21:14,7:14:550:7:277:-18.977,0,-43.5163 0/1:6:5,1:5:205:1:41:-2.28839,0,-17.0288 dDocent_Contig_15499 109 . C T 293.778 . AB=0.25;ABP=16.0391;AC=6;AF=0.75;AN=8;AO=13;CIGAR=1X;DP=31;DPB=31;DPRA=0;EPP=31.2394;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=430;QR=587;RO=18;RPL=0;RPP=31.2394;RPPR=42.0968;RPR=13;RUN=1;SAF=0;SAP=31.2394;SAR=13;SRF=0;SRP=42.0968;SRR=18;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:9,2:9:292:2:68:-3.1466,0,-23.2867 0/1:13:9,4:9:295:4:132:-8.29319,0,-22.9573 1/1:1:0,1:0:0:1:30:-2.99957,-0.30103,0 1/1:6:0,6:0:0:6:200:-18.3281,-1.80618,0 dDocent_Contig_15500 65 . T G 72.0736 . AB=0.222222;ABP=15.074;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=44;DPB=44;DPRA=2.07692;EPP=11.6962;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=155;QR=1372;RO=39;RPL=4;RPP=11.6962;RPPR=87.6977;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:21:20,0:20:707:0:0:0,-6.0206,-63.85 0/1:18:14,4:14:492:4:155:-8.90592,0,-39.1874 0/0:2:2,0:2:74:0:0:0,-0.60206,-7.02588 0/0:3:3,0:3:99:0:0:0,-0.90309,-9.23639 dDocent_Contig_15501 127 . C A 222.124 . AB=0.346154;ABP=8.35546;AC=2;AF=0.25;AN=8;AO=9;CIGAR=1X;DP=103;DPB=103;DPRA=0.337662;EPP=22.5536;EPPR=207.129;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=0.989362;PAO=0;PQA=0;PQR=0;PRO=0;QA=363;QR=3731;RO=94;RPL=0;RPP=22.5536;RPPR=207.129;RPR=9;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=207.129;SRR=94;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:52:52,0:52:2072:0:0:0,-15.6536,-186.653 0/0:25:25,0:25:998:0:0:0,-7.52575,-90.119 0/1:14:11,3:11:429:3:121:-7.06578,0,-34.7486 0/1:12:6,6:6:232:6:242:-18.5446,0,-17.6349 dDocent_Contig_15502 13 . T G 1156.24 . AB=0.661017;ABP=16.2968;AC=4;AF=0.5;AN=8;AO=39;CIGAR=1X;DP=59;DPB=59;DPRA=0;EPP=87.6977;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=58.0513;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.871795;PAIREDR=0.9;PAO=0;PQA=0;PQR=0;PRO=0;QA=1567;QR=805;RO=20;RPL=0;RPP=87.6977;RPPR=46.4397;RPR=39;RUN=1;SAF=39;SAP=87.6977;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:8,19:8:322:19:768:-61.3101,0,-21.2205 0/1:12:1,11:1:41:11:445:-36.7935,0,-0.482207 0/1:7:4,3:4:158:3:111:-5.06232,0,-12.4931 0/1:13:7,6:7:284:6:243:-18.3348,0,-22.0204 dDocent_Contig_15503 157 . G C 62.0094 . AB=0.333333;ABP=5.18177;AC=1;AF=0.25;AN=4;AO=3;CIGAR=1X;DP=20;DPB=20;DPRA=0.818182;EPP=9.52472;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=117;QR=650;RO=17;RPL=0;RPP=9.52472;RPPR=39.9253;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=39.9253;SRR=17;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:11,0:11:424:0:0:0,-3.31133,-38.513 0/1:9:6,3:6:226:3:117:-8.20094,0,-17.9903 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_15504 70 . A T 60.2919 . AB=0.166667;ABP=37.7539;AC=2;AF=0.25;AN=8;AO=6;CIGAR=1X;DP=85;DPB=85;DPRA=0.734694;EPP=16.0391;EPPR=174.557;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.666667;PAIREDR=0.708861;PAO=0;PQA=0;PQR=0;PRO=0;QA=217;QR=2843;RO=79;RPL=4;RPP=4.45795;RPPR=12.9331;RPR=2;RUN=1;SAF=4;SAP=4.45795;SAR=2;SRF=49;SRP=12.9331;SRR=30;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:22:22,0:22:767:0:0:0,-6.62266,-69.3416 0/0:27:27,0:27:1006:0:0:0,-8.12781,-90.8499 0/1:33:28,5:28:992:5:186:-7.16665,0,-79.6454 0/1:3:2,1:2:78:1:31:-2.19636,0,-6.50038 dDocent_Contig_15505 172 . G A 359.277 . AB=0.296296;ABP=12.7417;AC=4;AF=0.666667;AN=6;AO=13;CIGAR=1X;DP=32;DPB=32;DPRA=0;EPP=31.2394;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=516;QR=730;RO=19;RPL=13;RPP=31.2394;RPPR=44.2683;RPR=0;RUN=1;SAF=0;SAP=31.2394;SAR=13;SRF=0;SRP=44.2683;SRR=19;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:10,4:10:380:4:155:-10.1091,0,-30.3256 0/1:13:9,4:9:350:4:163:-11.145,0,-27.9446 ./.:.:.:.:.:.:.:. 1/1:5:0,5:0:0:5:198:-18.1965,-1.50515,0 dDocent_Contig_15506 19 . T A 45.7485 . AB=0.166667;ABP=26.1727;AC=2;AF=0.25;AN=8;AO=4;CIGAR=1X;DP=48;DPB=48;DPRA=1;EPP=11.6962;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=160;QR=1757;RO=44;RPL=0;RPP=11.6962;RPPR=98.5551;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:14,2:14:565:2:81:-2.86925,0,-46.3755 0/0:17:17,0:17:659:0:0:0,-5.11751,-59.6315 0/0:7:7,0:7:287:0:0:0,-2.10721,-26.2052 0/1:8:6,2:6:246:2:79:-5.089,0,-20.1119 dDocent_Contig_15507 209 . N G 191.755 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=5;CIGAR=1X;DP=5;DPB=5;DPRA=0;EPP=13.8677;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=201;QR=0;RO=0;RPL=5;RPP=13.8677;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:120:-11.1879,-0.90309,0 ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:81:-7.68573,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_15511 10 . T A 1904.45 . AB=0.216216;ABP=287.708;AC=4;AF=0.5;AN=8;AO=88;CIGAR=1X;DP=407;DPB=407;DPRA=0;EPP=194.1;EPPR=663.385;GTI=0;LEN=1;MEANALT=1.25;MQM=59.8977;MQMR=57.8386;NS=4;NUMALT=1;ODDS=0;PAIRED=0.579545;PAIREDR=0.398734;PAO=0;PQA=0;PQR=0;PRO=0;QA=3540;QR=12666;RO=316;RPL=0;RPP=194.1;RPPR=689.196;RPR=88;RUN=1;SAF=88;SAP=194.1;SAR=0;SRF=313;SRP=663.385;SRR=3;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:147:105,39:105:4198:39:1567:-97.5435,0,-323.619 0/1:142:115,27:115:4630:27:1084:-55.0982,0,-371.08 0/1:59:52,7:52:2073:7:285:-8.26364,0,-165.213 0/1:59:44,15:44:1765:15:604:-36.9374,0,-140.9 dDocent_Contig_15514 9 . A G 177.564 . AB=0.333333;ABP=8.80089;AC=2;AF=0.25;AN=8;AO=9;CIGAR=1X;DP=40;DPB=40;DPRA=4.11111;EPP=22.5536;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.777778;PAIREDR=0.870968;PAO=0;PQA=0;PQR=0;PRO=0;QA=337;QR=1194;RO=31;RPL=0;RPP=22.5536;RPPR=70.3259;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:11,6:11:425:6:229:-15.8578,0,-33.4869 0/0:3:3,0:3:117:0:0:0,-0.90309,-10.9104 0/0:13:12,1:12:463:1:30:0,-0.913823,-39.0218 0/1:7:5,2:5:189:2:78:-5.29626,0,-15.268 dDocent_Contig_15515 52 . G A 456.534 . AB=0.6;ABP=5.18177;AC=1;AF=0.125;AN=8;AO=16;CIGAR=1X;DP=57;DPB=57;DPRA=4.18182;EPP=37.7539;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.9375;PAIREDR=0.95122;PAO=0;PQA=0;PQR=0;PRO=0;QA=646;QR=1655;RO=41;RPL=16;RPP=37.7539;RPPR=92.0407;RPR=0;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:21:20,1:20:812:1:40:0,-2.32595,-69.3993 0/1:25:10,15:10:402:15:606:-47.3523,0,-29.0138 0/0:5:5,0:5:196:0:0:0,-1.50515,-18.0132 0/0:6:6,0:6:245:0:0:0,-1.80618,-22.4295 dDocent_Contig_15516 125 . A C 103.696 . AB=0.294118;ABP=9.26925;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=35;DPB=35;DPRA=1.88889;EPP=13.8677;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=185;QR=1095;RO=30;RPL=0;RPP=13.8677;RPPR=68.1545;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=68.1545;SRR=30;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:12,5:12:434:5:185:-11.8925,0,-34.2836 0/0:6:6,0:6:220:0:0:0,-1.80618,-20.1555 0/0:12:12,0:12:441:0:0:0,-3.61236,-40.0351 ./.:.:.:.:.:.:.:. dDocent_Contig_15517 61 . C T 283.191 . AB=0.241379;ABP=36.7056;AC=3;AF=0.375;AN=8;AO=15;CIGAR=1X;DP=69;DPB=69;DPRA=0;EPP=35.5824;EPPR=120.27;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=567;QR=2100;RO=54;RPL=15;RPP=35.5824;RPPR=120.27;RPR=0;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:32:29,3:29:1153:3:113:-0.906015,0,-94.4195 0/1:21:13,8:13:503:8:314:-22.3035,0,-39.2897 0/0:11:10,1:10:362:1:23:0,-1.01142,-30.6102 0/1:5:2,3:2:82:3:117:-9.40476,0,-6.27453 dDocent_Contig_15518 131 . T G 404.439 . AB=0.363636;ABP=10.1169;AC=4;AF=0.5;AN=8;AO=18;CIGAR=1X;DP=100;DPB=100;DPRA=0.283951;EPP=42.0968;EPPR=181.071;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=623;QR=2828;RO=82;RPL=0;RPP=42.0968;RPPR=181.071;RPR=18;RUN=1;SAF=0;SAP=42.0968;SAR=18;SRF=0;SRP=181.071;SRR=82;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:54:54,0:54:1857:0:0:0,-16.2556,-167.408 0/1:25:15,10:15:525:10:346:-23.9488,0,-40.0546 0/1:19:13,6:13:446:6:208:-13.3401,0,-34.7468 1/1:2:0,2:0:0:2:69:-6.55266,-0.60206,0 dDocent_Contig_15520 9 . A G 62.1568 . AB=0.235294;ABP=13.3567;AC=2;AF=0.25;AN=8;AO=4;CIGAR=1X;DP=38;DPB=38;DPRA=0.809524;EPP=11.6962;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=51.5;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.882353;PAO=0;PQA=0;PQR=0;PRO=0;QA=156;QR=1284;RO=34;RPL=0;RPP=11.6962;RPPR=76.8404;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:10,2:10:380:2:78:-3.74716,0,-30.9407 0/1:5:3,2:3:115:2:78:-5.8645,0,-9.21988 0/0:13:13,0:13:479:0:0:0,-3.91339,-43.4453 0/0:8:8,0:8:310:0:0:0,-2.40824,-28.2636 dDocent_Contig_15521 40 . A T 340.87 . AB=0.833333;ABP=14.5915;AC=3;AF=0.375;AN=8;AO=12;CIGAR=1X3M2D1M;DP=46;DPB=42.5714;DPRA=0.688889;EPP=29.068;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=465;QR=1350;RO=34;RPL=0;RPP=29.068;RPPR=76.8404;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:15:15,0:15:592:0:0:0,-4.51545,-53.6211 0|0:18:17,1:17:681:1:39:0,-1.52198,-57.7251 0|1:12:2,10:2:77:10:385:-31.3876,0,-3.69647 1|1:1:0,1:0:0:1:41:-4.09457,-0.30103,0 dDocent_Contig_15523 129 . C T 691.017 . AB=0.604167;ABP=7.5342;AC=4;AF=0.5;AN=8;AO=29;CIGAR=1X;DP=48;DPB=48;DPRA=0;EPP=65.983;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=985;QR=610;RO=19;RPL=0;RPP=65.983;RPPR=44.2683;RPR=29;RUN=1;SAF=0;SAP=65.983;SAR=29;SRF=0;SRP=44.2683;SRR=19;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:10,12:10:315:12:411:-30.6967,0,-22.0323 0/1:8:6,2:6:204:2:70:-4.23916,0,-16.2852 0/1:14:2,12:2:56:12:401:-32.1981,0,-1.10468 0/1:4:1,3:1:35:3:103:-8.40585,0,-2.29451 dDocent_Contig_15524 42 . A G 54.1618 . AB=0.0882353;ABP=53.0819;AC=0;AF=0;AN=8;AO=3;CIGAR=5M1X3M;DP=60;DPB=65.4444;DPRA=6.18182;EPP=9.52472;EPPR=111.584;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=116;QR=1964;RO=50;RPL=0;RPP=9.52472;RPPR=111.584;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:7:7,0,0:7:275:0,0:0,0:0,-2.10721,-25.1189,-2.10721,-25.1189,-25.1189 0|0:34:27,4,3:27:1057:4,3:138,116:-3.05673,0,-85.7086,-1.63862,-77.3851,-87.6843 0|0:15:12,3,0:12:473:3,0:110,0:-5.74536,0,-38.4059,-9.35772,-39.309,-48.2948 0|0:4:4,0,0:4:159:0,0:0,0:0,-1.20412,-14.6923,-1.20412,-14.6923,-14.6923 dDocent_Contig_15525 37 . T A 97.1036 . AB=0.208333;ABP=20.744;AC=5;AF=0.625;AN=8;AO=6;CIGAR=1X1M1X;DP=25;DPB=25;DPRA=0;EPP=16.0391;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=231;QR=728;RO=19;RPL=0;RPP=16.0391;RPPR=44.2683;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:8:6,2:6:235:2:75:-4.7121,0,-19.1136 0|1:14:12,2:12:453:2:78:-3.18905,0,-36.8964 0|1:2:1,1:1:40:1:40:-3.39362,0,-3.39362 1|1:1:0,1:0:0:1:38:-3.79727,-0.30103,0 dDocent_Contig_15526 51 . T A 154.803 . AB=0.142857;ABP=10.7656;AC=3;AF=0.375;AN=8;AO=5;CIGAR=1X;DP=31;DPB=31;DPRA=0.55;EPP=13.8677;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.961538;PAO=0;PQA=0;PQR=0;PRO=0;QA=201;QR=980;RO=26;RPL=5;RPP=13.8677;RPPR=59.4686;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:4:0,4:0:0:4:160:-14.7838,-1.20412,0 0/0:8:8,0:8:302:0:0:0,-2.40824,-27.5287 0/1:7:6,1:6:238:1:41:-1.98736,0,-19.6866 0/0:12:12,0:12:440:0:0:0,-3.61236,-39.9278 dDocent_Contig_15527 20 . T C 907.719 . AB=0.328767;ABP=40.193;AC=4;AF=0.5;AN=8;AO=48;CIGAR=1X3M1X1M1X;DP=146;DPB=146;DPRA=0;EPP=107.241;EPPR=215.815;GTI=0;LEN=1;MEANALT=1;MQM=33.8125;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=0;PAIREDR=0.816327;PAO=0;PQA=0;PQR=0;PRO=0;QA=1909;QR=3858;RO=98;RPL=0;RPP=107.241;RPPR=215.815;RPR=48;RUN=1;SAF=48;SAP=107.241;SAR=0;SRF=98;SRP=215.815;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:47:38,9:38:1491:9:358:-13.0603,0,-120.301 0|1:45:25,20:25:997:20:799:-45.2473,0,-76.4839 0|1:34:26,8:26:1020:8:311:-11.8526,0,-81.8645 0|1:20:9,11:9:350:11:441:-28.0096,0,-25.8382 dDocent_Contig_15528 119 . A T 73.326 . AB=0.307692;ABP=7.18621;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=59;DPB=59;DPRA=2.94444;EPP=16.0391;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=209;QR=1797;RO=53;RPL=0;RPP=16.0391;RPPR=118.098;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=118.098;SRR=53;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:18:17,1:17:561:1:35:0,-1.91991,-47.3034 0/0:22:21,1:21:732:1:34:0,-3.22375,-62.8044 0/1:13:9,4:9:294:4:140:-9.03154,0,-22.8644 0/0:6:6,0:6:210:0:0:0,-1.80618,-19.2425 dDocent_Contig_15529 98 . N T 2317.82 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=72;CIGAR=2X;DP=72;DPB=72;DPRA=0;EPP=159.356;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=2554;QR=0;RO=0;RPL=72;RPP=159.356;RPPR=0;RPR=0;RUN=1;SAF=72;SAP=159.356;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:23:0,23:0:0:23:819:-74.0326,-6.92369,0 1|1:34:0,34:0:0:34:1198:-108.124,-10.235,0 1|1:9:0,9:0:0:9:323:-29.4151,-2.70927,0 1|1:6:0,6:0:0:6:214:-19.6078,-1.80618,0 dDocent_Contig_15530 23 . A T 36.727 . AB=0.25;ABP=7.35324;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X;DP=45;DPB=45;DPRA=0.648649;EPP=7.35324;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.581395;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=1704;RO=43;RPL=0;RPP=7.35324;RPPR=96.3836;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:23:23,0:23:898:0:0:0,-6.92369,-81.1268 0/1:8:6,2:6:237:2:82:-5.37144,0,-19.2929 0/0:11:11,0:11:446:0:0:0,-3.31133,-40.4956 0/0:3:3,0:3:123:0:0:0,-0.90309,-11.4648 dDocent_Contig_15531 158 . G A 72.9818 . AB=0.75;ABP=5.18177;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=26;DPB=26;DPRA=0.545455;EPP=9.52472;EPPR=44.6459;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=4.33681e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=109;QR=794;RO=23;RPL=3;RPP=9.52472;RPPR=44.6459;RPR=0;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=52.9542;SRR=23;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:12:12,0:12:423:0:0:0,-3.61236,-38.3981 0/1:4:1,3:1:37:3:109:-8.96338,0,-2.49371 0/0:8:8,0:8:287:0:0:0,-2.40824,-26.1745 0/0:2:2,0:2:47:0:0:0,-0.60206,-4.46396 dDocent_Contig_15532 40 . G A 776.956 . AB=0.428571;ABP=3.94093;AC=4;AF=0.666667;AN=6;AO=25;CIGAR=1X;DP=38;DPB=38;DPRA=0;EPP=57.2971;EPPR=31.2394;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1006;QR=523;RO=13;RPL=0;RPP=57.2971;RPPR=31.2394;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=13;SRP=31.2394;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:17:1,16:1:41:16:645:-54.2901,-1.02294,0 ./.:.:.:.:.:.:.:. 0/1:14:7,7:7:279:7:282:-21.5382,0,-21.2651 0/1:7:5,2:5:203:2:79:-5.39003,0,-16.5458 dDocent_Contig_15533 109 . A G 404.692 . AB=0.586207;ABP=4.88226;AC=2;AF=0.25;AN=8;AO=17;CIGAR=1X;DP=49;DPB=49;DPRA=1.45;EPP=39.9253;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=573;QR=1072;RO=32;RPL=0;RPP=39.9253;RPPR=72.4974;RPR=17;RUN=1;SAF=0;SAP=39.9253;SAR=17;SRF=0;SRP=72.4974;SRR=32;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:7,16:7:224:16:538:-41.8167,0,-13.5495 0/0:16:16,0:16:538:0:0:0,-4.81648,-48.7398 0/1:6:5,1:5:174:1:35:-1.69245,0,-14.1958 0/0:4:4,0:4:136:0:0:0,-1.20412,-12.5758 dDocent_Contig_15535 23 . C T 280.309 . AB=0.388889;ABP=4.9405;AC=3;AF=0.375;AN=8;AO=10;CIGAR=1X;DP=34;DPB=34;DPRA=1.61538;EPP=24.725;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=379;QR=950;RO=24;RPL=0;RPP=24.725;RPPR=55.1256;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:120:-11.1877,-0.90309,0 0/1:18:11,7:11:429:7:259:-18.2409,0,-33.5435 0/0:5:5,0:5:203:0:0:0,-1.50515,-18.6528 0/0:8:8,0:8:318:0:0:0,-2.40824,-28.9866 dDocent_Contig_15536 106 . N A 173.968 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=5;CIGAR=2X;DP=5;DPB=5;DPRA=0;EPP=13.8677;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=175;QR=0;RO=0;RPL=0;RPP=13.8677;RPPR=0;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. 1|1:1:0,1:0:0:1:35:-3.49863,-0.30103,0 1|1:1:0,1:0:0:1:35:-3.49863,-0.30103,0 1|1:3:0,3:0:0:3:105:-9.79616,-0.90309,0 dDocent_Contig_15537 164 . C T 61.066 . AB=0.190476;ABP=20.4855;AC=3;AF=0.375;AN=8;AO=4;CIGAR=1X;DP=27;DPB=27;DPRA=1.16667;EPP=11.6962;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.956522;PAO=0;PQA=0;PQR=0;PRO=0;QA=163;QR=902;RO=23;RPL=4;RPP=11.6962;RPPR=52.9542;RPR=0;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=52.9542;SRR=23;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:6:6,0:6:240:0:0:0,-1.80618,-21.9751 0/1:13:12,1:12:460:1:40:-0.0822893,0,-37.8286 0/1:3:1,2:1:39:2:82:-6.87659,0,-2.99347 0/1:5:4,1:4:163:1:41:-2.58942,0,-13.5533 dDocent_Contig_15538 7 . A G 345.184 . AB=0.457143;ABP=3.56868;AC=3;AF=0.375;AN=8;AO=16;CIGAR=1X;DP=48;DPB=48;DPRA=0.897436;EPP=37.7539;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.6875;PAIREDR=0.96875;PAO=0;PQA=0;PQR=0;PRO=0;QA=546;QR=1220;RO=32;RPL=0;RPP=37.7539;RPPR=72.4974;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:10,2:10:387:2:79:-3.88488,0,-31.5753 0/0:13:13,0:13:494:0:0:0,-3.91339,-44.8055 0/1:16:8,8:8:300:8:244:-17.4381,0,-22.5391 0/1:7:1,6:1:39:6:223:-18.3193,0,-1.78935 dDocent_Contig_15539 8 . T A 1084.85 . AB=0.0595238;ABP=144.57;AC=2;AF=0.25;AN=8;AO=5;CIGAR=1X5M1X1M2X7M;DP=191;DPB=193.588;DPRA=0;EPP=13.8677;EPPR=220.158;GTI=0;LEN=1;MEANALT=4.5;MQM=52.8;MQMR=60;NS=4;NUMALT=5;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=193;QR=3954;RO=100;RPL=0;RPP=13.8677;RPPR=220.158;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=100;SRP=220.158;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:46:36,7,0,0,0,1:36:1418:7,0,0,0,1:272,0,0,0,41:-11.4668,0,-114.538,-22.3039,-116.646,-138.961,-22.3039,-116.646,-138.961,-138.961,-22.3039,-116.646,-138.961,-138.961,-138.961,-18.918,-113.261,-135.577,-135.577,-135.577,-135.276 0|0:48:16,8,2,3,18,0:16:637:8,2,3,18,0:311,77,119,719,0:-54.407,-34.0008,-84.0474,-53.2393,-80.4713,-105.092,-49.4274,-76.66,-95.8986,-100.98,0,-27.2387,-46.4774,-42.6653,-47.043,-59.2235,-86.4557,-105.694,-101.883,-52.4616,-111.679 0|0:61:31,8,0,12,2,5:31:1223:8,0,12,2,5:317,0,468,82,202:-29.1319,-12.8644,-111.086,-38.4638,-113.494,-139.094,0,-75.0294,-100.629,-97.0166,-31.6944,-106.725,-132.325,-93.8602,-131.723,-21.8082,-96.8393,-122.439,-83.9745,-115.671,-120.934 0|1:36:17,8,3,7,0,0:17:676:8,3,7,0,0:317,116,281,0,0:-20.8773,0,-53.2508,-16.4684,-46.1322,-71.2242,-2.83814,-32.5039,-48.9724,-56.3924,-25.9948,-55.6591,-72.1273,-58.4996,-81.6546,-25.9948,-55.6591,-72.1273,-58.4996,-81.6546,-81.6546 dDocent_Contig_15541 44 . C T 125.728 . AB=0.375;ABP=5.18177;AC=3;AF=0.375;AN=8;AO=6;CIGAR=1X;DP=24;DPB=24;DPRA=0.666667;EPP=16.0391;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=238;QR=713;RO=18;RPL=0;RPP=16.0391;RPPR=42.0968;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:8:8,0:8:309:0:0:0,-2.40824,-28.171 0/1:7:6,1:6:241:1:40:-1.88847,0,-19.9591 0/1:6:2,4:2:81:4:158:-12.7941,0,-5.87955 0/1:3:2,1:2:82:1:40:-3.09259,0,-6.87659 dDocent_Contig_15542 95 . G T 97.4117 . AB=0.15942;ABP=72.5289;AC=3;AF=0.375;AN=8;AO=11;CIGAR=1X;DP=71;DPB=71;DPRA=11.5;EPP=26.8965;EPPR=133.299;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.85;PAO=0;PQA=0;PQR=0;PRO=0;QA=381;QR=2066;RO=60;RPL=11;RPP=26.8965;RPPR=133.299;RPR=0;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:47:39,8:39:1344:8:276:-11.0275,0,-107.112 0/1:16:14,2:14:484:2:70:-1.83092,0,-39.0732 0/1:6:5,1:5:168:1:35:-1.69245,0,-13.6447 0/0:2:2,0:2:70:0:0:0,-0.60206,-6.6474 dDocent_Contig_15547 47 . G A 1752.57 . AB=0.45;ABP=6.05036;AC=4;AF=0.5;AN=8;AO=63;CIGAR=1X;DP=140;DPB=140;DPRA=0;EPP=139.813;EPPR=170.214;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2483;QR=3014;RO=77;RPL=0;RPP=139.813;RPPR=170.214;RPR=63;RUN=1;SAF=63;SAP=139.813;SAR=0;SRF=77;SRP=170.214;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:11,19:11:444:19:760:-59.6908,0,-31.2838 0/1:67:45,22:45:1783:22:850:-56.6299,0,-140.516 0/1:18:11,7:11:414:7:282:-20.3341,0,-32.1784 0/1:25:10,15:10:373:15:591:-46.0003,0,-26.3807 dDocent_Contig_15548 11 . C T 109.335 . AB=0.25;ABP=13.8677;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=69;DPB=69;DPRA=1.22449;EPP=13.8677;EPPR=141.985;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.96875;PAO=0;PQA=0;PQR=0;PRO=0;QA=203;QR=2545;RO=64;RPL=0;RPP=13.8677;RPPR=141.985;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=64;SRP=141.985;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:11,0:11:431:0:0:0,-3.31133,-39.1402 0/1:20:15,5:15:587:5:203:-12.6325,0,-47.1478 0/0:21:21,0:21:845:0:0:0,-6.32163,-76.3628 0/0:17:17,0:17:682:0:0:0,-5.11751,-61.7107 dDocent_Contig_15549 41 . G A 892.294 . AB=0.426667;ABP=6.51361;AC=2;AF=0.333333;AN=6;AO=32;CIGAR=1X;DP=92;DPB=92;DPRA=2.20588;EPP=72.4974;EPPR=133.299;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1274;QR=2292;RO=60;RPL=0;RPP=72.4974;RPPR=133.299;RPR=32;RUN=1;SAF=32;SAP=72.4974;SAR=0;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:35:14,21:14:518:21:831:-64.5682,0,-36.4071 0/1:40:29,11:29:1102:11:443:-28.1841,0,-87.4242 0/0:17:17,0:17:672:0:0:0,-5.11751,-60.8113 ./.:.:.:.:.:.:.:. dDocent_Contig_15550 13 . G A 308.62 . AB=0.342857;ABP=10.5174;AC=2;AF=0.25;AN=8;AO=12;CIGAR=1X2M1X2M1X;DP=76;DPB=76;DPRA=0.853659;EPP=29.068;EPPR=141.985;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.921875;PAO=0;PQA=0;PQR=0;PRO=0;QA=478;QR=2488;RO=64;RPL=0;RPP=29.068;RPPR=141.985;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=64;SRP=141.985;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:25:14,11:14:547:11:438:-32.2496,0,-42.0488 0|0:15:15,0:15:588:0:0:0,-4.51545,-53.2621 0|0:26:26,0:26:999:0:0:0,-7.82678,-90.2123 0|1:10:9,1:9:354:1:40:-0.985379,0,-29.2118 dDocent_Contig_15551 128 . A G 40.1683 . AB=0.15;ABP=45.5712;AC=3;AF=0.375;AN=8;AO=6;CIGAR=1X;DP=56;DPB=56;DPRA=0.833333;EPP=16.0391;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=204;QR=1734;RO=50;RPL=0;RPP=16.0391;RPPR=111.584;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=111.584;SRR=50;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:32:29,3:29:1006:3:104:-0.0701319,0,-81.2203 0/0:16:16,0:16:553:0:0:0,-4.81648,-50.0972 0/1:5:4,1:4:140:1:31:-1.5943,0,-11.4398 0/1:3:1,2:1:35:2:69:-5.64957,0,-2.59554 dDocent_Contig_15552 118 . T C 572.866 . AB=0.457627;ABP=3.93042;AC=3;AF=0.375;AN=8;AO=29;CIGAR=1X;DP=85;DPB=85;DPRA=0;EPP=65.983;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=40;MQMR=51.4286;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=977;QR=1928;RO=56;RPL=0;RPP=65.983;RPPR=124.613;RPR=29;RUN=1;SAF=0;SAP=65.983;SAR=29;SRF=0;SRP=124.613;SRR=56;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:26:24,2:24:815:2:68:0,-1.55514,-66.1501 0/1:20:15,5:15:519:5:173:-9.38373,0,-40.9111 0/1:14:5,9:5:175:9:311:-23.2164,0,-11.5538 0/1:25:12,13:12:419:13:425:-30.0845,0,-29.876 dDocent_Contig_15553 18 . C A 179.968 . AB=0.225;ABP=29.2851;AC=2;AF=0.25;AN=8;AO=9;CIGAR=1X;DP=84;DPB=84;DPRA=0.909091;EPP=22.5536;EPPR=165.871;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.88;PAO=0;PQA=0;PQR=0;PRO=0;QA=363;QR=3005;RO=75;RPL=0;RPP=22.5536;RPPR=165.871;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=75;SRP=165.871;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:22:22,0:22:888:0:0:0,-6.62266,-80.2284 0/1:16:11,5:11:446:5:203:-13.8366,0,-35.6791 0/1:24:20,4:20:792:4:160:-7.5582,0,-64.3719 0/0:22:22,0:22:879:0:0:0,-6.62266,-79.4147 dDocent_Contig_15554 31 . A G 92.8739 . AB=0.333333;ABP=5.9056;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=66;DPB=66;DPRA=1.86957;EPP=13.8677;EPPR=126.927;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.967213;PAO=0;PQA=0;PQR=0;PRO=0;QA=198;QR=2421;RO=61;RPL=0;RPP=13.8677;RPPR=135.47;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=60;SRP=126.927;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:31:30,1:30:1196:1:40:0,-5.33625,-103.922 0/0:19:19,0:19:746:0:0:0,-5.71957,-67.4601 0/1:12:8,4:8:322:4:158:-10.9863,0,-25.7353 0/0:4:4,0:4:157:0:0:0,-1.20412,-14.5064 dDocent_Contig_15555 43 . T A 54.9841 . AB=0.147059;ABP=39.7976;AC=2;AF=0.25;AN=8;AO=5;CIGAR=1X3M1X;DP=79;DPB=79;DPRA=0.755556;EPP=13.8677;EPPR=23.398;GTI=0;LEN=1;MEANALT=1.5;MQM=55;MQMR=56.6111;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.875;PAO=0;PQA=0;PQR=0;PRO=0;QA=196;QR=2819;RO=72;RPL=5;RPP=13.8677;RPPR=23.398;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=72;SRP=159.356;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:26:20,4,2:20:783:4,2:157,78:-6.86466,0,-63.1794,-6.47423,-57.9721,-70.2542 0|0:23:23,0,0:23:902:0,0:0,0:0,-6.92369,-80.7917,-6.92369,-80.7917,-80.7917 0|0:22:22,0,0:22:861:0,0:0,0:0,-6.62266,-73.9972,-6.62266,-73.9972,-73.9972 0|1:8:7,1,0:7:273:1,0:39,0:-1.48099,0,-21.8939,-3.5882,-22.195,-25.3954 dDocent_Contig_15556 80 . G A 894.171 . AB=0.390244;ABP=7.30028;AC=6;AF=0.75;AN=8;AO=35;CIGAR=1X;DP=60;DPB=60;DPRA=0;EPP=79.0118;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1154;QR=805;RO=25;RPL=35;RPP=79.0118;RPPR=57.2971;RPR=0;RUN=1;SAF=35;SAP=79.0118;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:33:19,14:19:628:14:455:-31.3268,0,-46.9001 1/1:6:0,6:0:0:6:201:-18.4195,-1.80618,0 1/1:13:0,13:0:0:13:430:-39.0181,-3.91339,0 0/1:8:6,2:6:177:2:68:-4.04969,0,-13.8114 dDocent_Contig_15557 113 . C A 120.277 . AB=0.304348;ABP=10.6577;AC=2;AF=0.5;AN=4;AO=7;CIGAR=1X;DP=23;DPB=23;DPRA=0;EPP=18.2106;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=244;QR=540;RO=16;RPL=0;RPP=18.2106;RPPR=37.7539;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=37.7539;SRR=16;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:9,3:9:297:3:108:-6.46281,0,-23.4393 0/1:11:7,4:7:243:4:136:-9.26389,0,-18.8975 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_15558 65 . G A 265.685 . AB=0.208333;ABP=38.4777;AC=4;AF=0.5;AN=8;AO=10;CIGAR=6M1X1M;DP=78;DPB=108;DPRA=0;EPP=24.725;EPPR=111.584;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=5;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=377;QR=1912;RO=50;RPL=10;RPP=24.725;RPPR=111.584;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:13:6,1,0,2,4,0:6:235:1,0,2,4,0:35,0,65,142,0:-9.77336,-8.73109,-27.7765,-11.5795,-28.0776,-30.9239,-6.34132,-22.8397,-25.685,-25.083,0,-16.517,-19.362,-14.1289,-18.1578,-11.5795,-28.0776,-30.9239,-25.685,-19.362,-30.9239 0|1:22:20,0,0,0,2,0:20:781:0,0,0,2,0:0,0,0,80,0:-0.969131,-6.98973,-71.1854,-6.98973,-71.1854,-71.1854,-6.98973,-71.1854,-71.1854,-71.1854,0,-64.5944,-64.5944,-64.5944,-63.9923,-6.98973,-71.1854,-71.1854,-71.1854,-64.5944,-71.1854 0|1:30:17,6,2,0,0,3:17:625:6,2,0,0,3:213,12,0,0,117:-11.5328,0,-49.3731,-16.6542,-51.1648,-67.16,-16.6503,-51.1792,-67.7621,-67.7821,-16.6503,-51.1792,-67.7621,-67.7821,-67.7821,-7.00069,-41.553,-58.1401,-58.158,-58.158,-57.2549 0|1:13:7,2,0,0,4,0:7:271:2,0,0,4,0:70,0,0,155,0:-10.6502,-7.07439,-28.7336,-12.7574,-29.3356,-35.0254,-12.7574,-29.3356,-35.0254,-35.0254,0,-16.6029,-22.2902,-22.2902,-21.086,-12.7574,-29.3356,-35.0254,-35.0254,-22.2902,-35.0254 dDocent_Contig_15559 42 . T A 562.189 . AB=0.458333;ABP=3.73412;AC=4;AF=0.5;AN=8;AO=22;CIGAR=1X;DP=48;DPB=48;DPRA=0;EPP=50.7827;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=851;QR=1052;RO=26;RPL=0;RPP=50.7827;RPPR=59.4686;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:5,6:5:203:6:237:-18.3916,0,-15.3417 0/1:17:8,9:8:322:9:343:-26.1053,0,-24.2308 0/1:13:9,4:9:366:4:152:-10.1322,0,-29.3918 0/1:7:4,3:4:161:3:119:-8.9878,0,-12.7681 dDocent_Contig_15560 20 . A T 713.601 . AB=0.482759;ABP=3.08518;AC=5;AF=0.625;AN=8;AO=23;CIGAR=1X;DP=38;DPB=38;DPRA=0;EPP=52.9542;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1;MQM=59.8261;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=926;QR=605;RO=15;RPL=0;RPP=52.9542;RPPR=35.5824;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=15;SRP=35.5824;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:9:0,9:0:0:9:363:-33.0336,-2.70927,0 0/1:9:8,1:8:322:1:41:-1.37721,0,-26.6389 0/1:14:5,9:5:204:9:366:-29.0905,0,-14.5296 0/1:6:2,4:2:79:4:156:-12.6088,0,-5.69145 dDocent_Contig_15561 209 . N G 118.945 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=120;QR=0;RO=0;RPL=3;RPP=9.52472;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1:0,1:0:0:1:41:-4.09457,-0.30103,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:79:-7.49724,-0.60206,0 dDocent_Contig_15563 17 . C T 1382.43 . AB=0.0251142;ABP=860.97;AC=1;AF=0.125;AN=8;AO=11;CIGAR=1X2M1X;DP=438;DPB=439;DPRA=0;EPP=26.8965;EPPR=680.51;GTI=0;LEN=1;MEANALT=5.75;MQM=54.1818;MQMR=59.7885;NS=4;NUMALT=3;ODDS=5.55112e-17;PAIRED=0;PAIREDR=0.689103;PAO=0;PQA=0;PQR=0;PRO=0;QA=423;QR=12184;RO=312;RPL=0;RPP=26.8965;RPPR=680.51;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=312;SRP=680.51;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:136:84,1,11,27:84:3292:1,11,27:40,449,1087:-63.3384,-85.3298,-355.719,-51.5755,-318.971,-318.955,0,-267.393,-233.64,-262.561 0|0:161:120,2,3,25:120:4705:2,3,25:77,121,986:-44.984,-75.102,-461.401,-71.1329,-452.029,-457.132,0,-380.894,-376.926,-379.374 0|0:109:80,5,2,18:80:3094:5,2,18:199,81,721:-35.3161,-43.2365,-295.534,-52.719,-290.36,-305.922,0,-237.64,-247.125,-248.386 0|1:32:28,3,0,0:28:1093:3,0,0:107,0,0:-0.260972,0,-88.9337,-8.68981,-89.8368,-98.5557,-8.68981,-89.8368,-98.5557,-98.5557 dDocent_Contig_15564 36 . G C 34.8096 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=2X1M1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=19;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=54;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. 1|1:2:0,2:0:0:2:54:-3.47974,-0.60206,0 .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. dDocent_Contig_15565 116 . G T 91.8821 . AB=0.296296;ABP=12.7417;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=35;DPB=35;DPRA=1.6875;EPP=20.3821;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=40;MQMR=40;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=228;QR=889;RO=27;RPL=0;RPP=20.3821;RPPR=61.6401;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=61.6401;SRR=27;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:8:8,0:8:249:0:0:0,-2.40824,-22.0097 ./.:.:.:.:.:.:.:. 0/1:6:5,1:5:173:1:34:-1.49653,0,-13.6015 0/1:21:14,7:14:467:7:194:-10.9689,0,-34.8215 dDocent_Contig_15566 63 . T C 479.704 . AB=0.35;ABP=14.7363;AC=4;AF=0.5;AN=8;AO=21;CIGAR=1X;DP=60;DPB=60;DPRA=0;EPP=48.6112;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=800;QR=1580;RO=39;RPL=21;RPP=48.6112;RPPR=87.6977;RPR=0;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:7,5:7:284:5:154:-10.5456,0,-22.3211 0/1:29:25,4:25:1010:4:163:-6.32856,0,-82.4636 0/1:12:3,9:3:123:9:366:-29.6928,0,-7.85243 0/1:7:4,3:4:163:3:117:-8.80137,0,-12.9512 dDocent_Contig_15567 51 . G A 247.847 . AB=0.391304;ABP=5.3706;AC=5;AF=0.625;AN=8;AO=10;CIGAR=1X;DP=24;DPB=24;DPRA=0;EPP=24.725;EPPR=33.4109;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=391;QR=557;RO=14;RPL=10;RPP=24.725;RPPR=33.4109;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=14;SRP=33.4109;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:7:6,1:6:244:1:38:-1.69006,0,-20.2316 0/1:11:7,4:7:273:4:152:-10.7358,0,-21.623 1/1:1:0,1:0:0:1:40:-3.99568,-0.30103,0 0/1:5:1,4:1:40:4:161:-13.3703,0,-2.49053 dDocent_Contig_15568 186 . A G 1241.81 . AB=0.735849;ABP=28.6173;AC=1;AF=0.125;AN=8;AO=39;CIGAR=1X;DP=70;DPB=70;DPRA=9.35294;EPP=87.6977;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1570;QR=1062;RO=31;RPL=39;RPP=87.6977;RPPR=70.3259;RPR=0;RUN=1;SAF=0;SAP=87.6977;SAR=39;SRF=0;SRP=70.3259;SRR=31;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:53:14,39:14:492:39:1570:-125.578,0,-28.6549 0/0:12:12,0:12:413:0:0:0,-3.61236,-37.4943 0/0:1:1,0:1:34:0:0:0,-0.30103,-3.39891 0/0:4:4,0:4:123:0:0:0,-1.20412,-11.3703 dDocent_Contig_15570 14 . G A 65.7967 . AB=0.190476;ABP=20.4855;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=108;DPB=108;DPRA=1.91667;EPP=18.2106;EPPR=222.329;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=277;QR=3997;RO=101;RPL=0;RPP=18.2106;RPPR=222.329;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=101;SRP=222.329;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:42:40,2:40:1571:2:81:0,-4.95753,-133.944 0/0:29:28,1:28:1119:1:38:0,-4.9326,-97.1925 0/1:21:17,4:17:661:4:158:-8.27864,0,-53.4918 0/0:16:16,0:16:646:0:0:0,-4.81648,-58.4738 dDocent_Contig_15571 154 . T C 308.041 . AB=0.413793;ABP=4.88226;AC=3;AF=0.375;AN=8;AO=12;CIGAR=1X;DP=31;DPB=31;DPRA=4.83333;EPP=29.068;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=486;QR=758;RO=19;RPL=0;RPP=29.068;RPPR=44.2683;RPR=12;RUN=1;SAF=0;SAP=29.068;SAR=12;SRF=0;SRP=44.2683;SRR=19;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:5,6:5:194:6:243:-18.9368,0,-14.5172 0/1:13:8,5:8:324:5:202:-14.6485,0,-25.616 0/1:5:4,1:4:159:1:41:-2.58942,0,-13.1868 0/0:2:2,0:2:81:0:0:0,-0.60206,-7.68573 dDocent_Contig_15572 10 . T C 78.9053 . AB=0.6;ABP=3.44459;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=27;DPB=27;DPRA=0.681818;EPP=9.52472;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=57.25;NS=4;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=0.875;PAO=0;PQA=0;PQR=0;PRO=0;QA=119;QR=973;RO=24;RPL=0;RPP=9.52472;RPPR=55.1256;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:11,0:11:446:0:0:0,-3.31133,-40.496 0/0:8:8,0:8:324:0:0:0,-2.40824,-28.6697 0/1:5:2,3:2:81:3:119:-9.58935,0,-6.18058 0/0:3:3,0:3:122:0:0:0,-0.90309,-10.9329 dDocent_Contig_15575 9 . A G 222.29 . AB=0.235294;ABP=34.0496;AC=3;AF=0.375;AN=8;AO=12;CIGAR=1X;DP=55;DPB=55;DPRA=4.25;EPP=29.068;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.416667;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=462;QR=1636;RO=43;RPL=0;RPP=29.068;RPPR=96.3836;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:19,8:19:720:8:306:-19.7718,0,-56.9987 0/1:17:14,3:14:529:3:117:-5.79287,0,-42.8326 0/1:7:6,1:6:231:1:39:-1.78935,0,-19.0507 0/0:4:4,0:4:156:0:0:0,-1.20412,-14.4173 dDocent_Contig_15576 11 . T G 67.0607 . AB=0.117647;ABP=46.1843;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X3M1X;DP=45;DPB=45;DPRA=5.66667;EPP=11.6962;EPPR=72.4974;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=0.46875;PAO=0;PQA=0;PQR=0;PRO=0;QA=139;QR=1222;RO=32;RPL=0;RPP=11.6962;RPPR=72.4974;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:12:10,2,0,0:10:381:2,0,0:69,0,0:-2.93896,0,-31.0325,-5.94926,-31.6346,-37.233,-5.94926,-31.6346,-37.233,-37.233 0|0:22:15,2,2,3:15:576:2,2,3:70,36,115:-4.97395,-3.78134,-50.5242,-6.90583,-48.5088,-53.5977,0,-41.684,-44.7605,-46.4742 0|0:3:3,0,0,0:3:112:0,0,0:0,0,0:0,-0.90309,-10.4465,-0.90309,-10.4465,-10.4465,-0.90309,-10.4465,-10.4465,-10.4465 0|0:8:4,0,2,2:4:153:0,2,2:0,66,48:-4.1755,-5.37962,-17.9836,0,-12.6502,-12.0481,-1.70863,-14.2988,-8.98165,-13.6968 dDocent_Contig_15577 34 . A T 157.281 . AB=0.333333;ABP=8.80089;AC=2;AF=0.25;AN=8;AO=8;CIGAR=1X;DP=36;DPB=36;DPRA=2;EPP=4.09604;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=285;QR=1101;RO=28;RPL=0;RPP=20.3821;RPPR=63.8115;RPR=8;RUN=1;SAF=5;SAP=4.09604;SAR=3;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:7,2:7:279:2:72:-4.12745,0,-22.7716 0/0:4:4,0:4:155:0:0:0,-1.20412,-14.3248 0/1:15:9,6:9:350:6:213:-14.9978,0,-27.3449 0/0:8:8,0:8:317:0:0:0,-2.40824,-28.8968 dDocent_Contig_15579 27 . G T 47.3047 . AB=0.153846;ABP=30.0702;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=61;DPB=61;DPRA=2.22857;EPP=11.6962;EPPR=126.784;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=53.8947;NS=4;NUMALT=1;ODDS=0;PAIRED=0.25;PAIREDR=0.438596;PAO=0;PQA=0;PQR=0;PRO=0;QA=151;QR=2230;RO=57;RPL=0;RPP=11.6962;RPPR=126.784;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:22,4:22:884:4:151:-6.12839,0,-72.0435 0/0:14:14,0:14:512:0:0:0,-4.21442,-42.9551 0/0:8:8,0:8:320:0:0:0,-2.40824,-25.8785 0/0:13:13,0:13:514:0:0:0,-3.91339,-37.8824 dDocent_Contig_15580 9 . A T 7212.04 . AB=0.0291545;ABP=1323.99;AC=0;AF=0;AN=8;AO=20;CIGAR=1X2M1X1M;DP=686;DPB=685.6;DPRA=0;EPP=30.8051;EPPR=448.522;GTI=0;LEN=1;MEANALT=6.25;MQM=59.6;MQMR=59.9908;NS=4;NUMALT=2;ODDS=0;PAIRED=0.65;PAIREDR=0.470046;PAO=0;PQA=0;PQR=0;PRO=0;QA=787;QR=8287;RO=217;RPL=0;RPP=46.4397;RPPR=474.22;RPR=20;RUN=1;SAF=18;SAP=30.8051;SAR=2;SRF=214;SRP=448.522;SRR=3;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:199:70,118,3:70:2689:118,3:4651,118:-218.162,0,-185.234,-229.524,-211.049,-449.395 0|0:199:70,115,6:70:2664:115,6:4551,237:-190.985,0,-183.939,-192.547,-199.052,-409.278 0|0:183:49,115,4:49:1867:115,4:4480,154:-211.486,0,-118.563,-213.588,-140.536,-365.556 0|0:105:28,63,7:28:1067:63,7:2503,278:-107.969,0,-68.607,-93.5047,-64.6849,-178.962 dDocent_Contig_15582 68 . C T 156.703 . AB=0.375;ABP=5.18177;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=29;DPB=29;DPRA=3.69231;EPP=16.0391;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=239;QR=919;RO=23;RPL=6;RPP=16.0391;RPPR=52.9542;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:10,6:10:395:6:239:-17.0679,0,-31.0903 0/0:6:6,0:6:240:0:0:0,-1.80618,-21.9754 0/0:5:5,0:5:202:0:0:0,-1.50515,-18.5615 0/0:2:2,0:2:82:0:0:0,-0.60206,-7.77968 dDocent_Contig_15583 68 . T A 133.694 . AB=0.454545;ABP=3.20771;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=31;DPB=31;DPRA=1.65;EPP=13.8677;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=200;QR=1045;RO=26;RPL=5;RPP=13.8677;RPPR=59.4686;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5,0:5:202:0:0:0,-1.50515,-18.5615 0/0:3:3,0:3:119:0:0:0,-0.90309,-11.095 0/0:12:12,0:12:483:0:0:0,-3.61236,-43.8218 0/1:11:6,5:6:241:5:200:-15.0682,0,-18.755 dDocent_Contig_15584 107 . N G 162.055 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=6;CIGAR=1X;DP=6;DPB=6;DPRA=0;EPP=16.0391;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=33.5;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=209;QR=0;RO=0;RPL=0;RPP=16.0391;RPPR=0;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:70:-4.49717,-0.60206,0 ./.:.:.:.:.:.:.:. 1/1:4:0,4:0:0:4:139:-11.4066,-1.20412,0 dDocent_Contig_15585 49 . C T 1510.93 . AB=0.358025;ABP=31.3735;AC=4;AF=0.5;AN=8;AO=58;CIGAR=1X;DP=162;DPB=162;DPRA=0;EPP=128.956;EPPR=228.843;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.965517;PAIREDR=0.990385;PAO=0;PQA=0;PQR=0;PRO=0;QA=2288;QR=4109;RO=104;RPL=58;RPP=128.956;RPPR=228.843;RPR=0;RUN=1;SAF=58;SAP=128.956;SAR=0;SRF=104;SRP=228.843;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:68:44,24:44:1779:24:969:-67.0368,0,-139.849 0/1:40:29,11:29:1145:11:412:-25.3756,0,-91.2812 0/1:44:23,21:23:898:21:826:-61.4024,0,-67.8662 0/1:10:8,2:8:287:2:81:-4.67543,0,-23.1515 dDocent_Contig_15586 43 . T A 44.0515 . AB=0.4;ABP=3.44459;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X;DP=34;DPB=34;DPRA=0.517241;EPP=7.35324;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.9375;PAO=0;PQA=0;PQR=0;PRO=0;QA=77;QR=1241;RO=32;RPL=0;RPP=7.35324;RPPR=72.4974;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:5:3,2:3:114:2:77:-5.80305,0,-9.12494 0/0:9:9,0:9:326:0:0:0,-2.70927,-29.6749 0/0:6:6,0:6:242:0:0:0,-1.80618,-22.1569 0/0:14:14,0:14:559:0:0:0,-4.21442,-50.6502 dDocent_Contig_15590 29 . T A 1385.8 . AB=0.290076;ABP=53.1531;AC=2;AF=0.25;AN=8;AO=38;CIGAR=2M1X3M;DP=148;DPB=146;DPRA=0;EPP=85.5263;EPPR=155.013;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=4;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1515;QR=2751;RO=70;RPL=0;RPP=85.5263;RPPR=155.013;RPR=38;RUN=1;SAF=38;SAP=85.5263;SAR=0;SRF=70;SRP=155.013;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:87:45,0,0,19,22:45:1759:0,0,19,22:0,0,768,900:-60.7281,-74.2744,-218.871,-74.2744,-218.871,-218.871,-10.9596,-155.553,-155.553,-149.833,0,-144.596,-144.596,-81.2753,-137.973 0|0:20:10,6,0,4,0:10:401:6,0,4,0:238,0,164,0:-16.5731,0,-31.2273,-19.5834,-33.0335,-52.6227,-6.04182,-19.4946,-39.0843,-37.8802,-19.5834,-33.0335,-52.6227,-39.0843,-52.6227 0|1:24:6,0,3,15,0:6:240:0,3,15,0:0,120,583,0:-46.0808,-47.887,-67.6598,-37.9998,-57.7736,-56.8705,0,-19.7705,-9.88524,-15.255,-47.887,-67.6598,-57.7736,-19.7705,-67.6598 0|1:17:9,0,8,0,0:9:351:0,8,0,0:0,304,0,0:-22.5956,-25.3048,-54.1611,0,-29.2405,-26.8323,-25.3048,-54.1611,-29.2405,-54.1611,-25.3048,-54.1611,-29.2405,-54.1611,-54.1611 dDocent_Contig_15591 99 . N A 101.678 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=7X10I5X;DP=3;DPB=5.5;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=109;QR=0;RO=0;RPL=3;RPP=9.52472;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. 1|1:3:0,3:0:0:3:109:-10.1673,-0.90309,0 .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. dDocent_Contig_15592 14 . G T 127.102 . AB=0.185714;ABP=63.067;AC=1;AF=0.125;AN=8;AO=17;CIGAR=1X;DP=178;DPB=178;DPRA=3.375;EPP=39.9253;EPPR=352.617;GTI=0;LEN=1;MEANALT=1;MQM=39.1176;MQMR=54.795;NS=4;NUMALT=1;ODDS=0;PAIRED=0.294118;PAIREDR=0.571429;PAO=0;PQA=0;PQR=0;PRO=0;QA=656;QR=6379;RO=161;RPL=0;RPP=39.9253;RPPR=352.617;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=161;SRP=352.617;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:70:57,13:57:2253:13:506:-14.1081,0,-176.459 0/0:68:65,3:65:2606:3:121:0,-9.18984,-214.908 0/0:24:23,1:23:890:1:29:0,-4.32506,-76.4414 0/0:16:16,0:16:630:0:0:0,-4.81648,-56.6937 dDocent_Contig_15594 54 . T C 641.974 . AB=0.0789474;ABP=61.5258;AC=0;AF=0;AN=8;AO=3;CIGAR=5M1X9M3I1M1X3M;DP=91;DPB=98.65;DPRA=0;EPP=9.52472;EPPR=72.4974;GTI=0;LEN=1;MEANALT=4.5;MQM=60;MQMR=60;NS=4;NUMALT=7;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=115;QR=1194;RO=32;RPL=3;RPP=9.52472;RPPR=72.4974;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:31:8,2,7,1,3,5,4,0:8:308:2,7,1,3,5,4,0:61,257,36,107,182,145,0:-18.6038,-16.1324,-40.8251,0,-20.4195,-23.1915,-18.0746,-38.4901,-22.3616,-43.0695,-12.2915,-32.7078,-16.5791,-34.6506,-36.6847,-6.14727,-26.565,-10.4357,-28.5075,-22.7249,-29.9395,-9.17237,-29.5894,-13.4604,-31.5321,-25.7495,-19.6064,-33.2651,-21.012,-41.4272,-25.2987,-43.3705,-37.5878,-31.4446,-34.4693,-46.3077 0|0:16:0,7,0,0,0,5,0,2:0:0:7,0,0,0,5,0,2:255,0,0,0,184,0,76:-35.9061,-15.0686,-12.9614,-35.9061,-15.0686,-35.9061,-35.9061,-15.0686,-35.9061,-35.9061,-35.9061,-15.0686,-35.9061,-35.9061,-35.9061,-20.8569,0,-20.8569,-20.8569,-20.8569,-19.3517,-35.9061,-15.0686,-35.9061,-35.9061,-35.9061,-20.8569,-35.9061,-29.6695,-8.82638,-29.6695,-29.6695,-29.6695,-14.617,-29.6695,-29.0675 0|0:22:8,4,3,2,0,5,0,0:8:288:4,3,2,0,5,0,0:154,76,70,0,187,0,0:-12.9191,-2.66777,-24.9714,-9.41817,-20.2589,-32.0051,-9.6316,-20.4795,-27.2149,-32.5303,-15.3274,-26.1755,-32.9082,-33.1323,-38.8275,0,-10.8515,-17.5931,-17.8123,-23.5083,-22.0031,-15.3274,-26.1755,-32.9082,-33.1323,-38.8275,-23.5083,-38.8275,-15.3274,-26.1755,-32.9082,-33.1323,-38.8275,-23.5083,-38.8275,-38.8275 0|0:22:16,0,1,0,0,3,0,1:16:598:0,1,0,0,3,0,1:0,39,0,0,110,0,39:-4.16532,-8.9818,-57.9432,-5.77293,-54.7366,-54.4356,-8.9818,-57.9432,-54.7366,-57.9432,-8.9818,-57.9432,-54.7366,-57.9432,-57.9432,0,-48.9543,-45.7476,-48.9543,-48.9543,-48.0512,-8.9818,-57.9432,-54.7366,-57.9432,-57.9432,-48.9543,-57.9432,-5.77293,-54.7366,-51.5299,-54.7366,-54.7366,-45.7476,-54.7366,-54.4356 dDocent_Contig_15595 101 . N C 97.9651 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=6X5I1X;DP=3;DPB=5.14286;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=105;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. 1|1:3:0,3:0:0:3:105:-9.79597,-0.90309,0 .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. dDocent_Contig_15596 59 . A T 39.2873 . AB=0.133333;ABP=20.5268;AC=0;AF=0;AN=8;AO=2;CIGAR=1M2X1M1X5M;DP=43;DPB=44.2;DPRA=1.60714;EPP=7.35324;EPPR=85.5263;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=69;QR=1405;RO=38;RPL=2;RPP=7.35324;RPPR=85.5263;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:7:7,0,0:7:260:0,0:0,0:0,-2.10721,-23.7568,-2.10721,-23.7568,-23.7568 0|0:7:7,0,0:7:258:0,0:0,0:0,-2.10721,-23.5739,-2.10721,-23.5739,-23.5739 0|0:15:10,2,3:10:374:2,3:69,106:-5.62752,-3.03578,-33.0774,0,-25.0513,-29.7488 0|0:14:14,0,0:14:513:0,0:0,0:0,-4.21442,-46.5079,-4.21442,-46.5079,-46.5079 dDocent_Contig_15597 162 . C T 458.44 . AB=0.263158;ABP=40.0396;AC=2;AF=0.25;AN=8;AO=20;CIGAR=1X;DP=152;DPB=152;DPRA=1;EPP=46.4397;EPPR=289.645;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=793;QR=5166;RO=132;RPL=20;RPP=46.4397;RPPR=289.645;RPR=0;RUN=1;SAF=0;SAP=46.4397;SAR=20;SRF=0;SRP=289.645;SRR=132;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:71:71,0:71:2760:0:0:0,-21.3731,-248.522 0/1:71:52,19:52:2059:19:755:-46.8976,0,-164.133 0/1:5:4,1:4:162:1:38:-2.29212,0,-13.4618 0/0:5:5,0:5:185:0:0:0,-1.50515,-17.0038 dDocent_Contig_15598 28 . T A 69.5554 . AB=0.0909091;ABP=66.97;AC=2;AF=0.25;AN=8;AO=4;CIGAR=1X3M1X2M;DP=70;DPB=72.1429;DPRA=3.66667;EPP=11.6962;EPPR=131.127;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=6.93889e-18;PAIRED=1;PAIREDR=0.966102;PAO=0;PQA=0;PQR=0;PRO=0;QA=159;QR=2336;RO=59;RPL=0;RPP=11.6962;RPPR=131.127;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=59;SRP=131.127;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:20:18,2,0:18:712:2,0:81,0:-1.66513,0,-58.3867,-7.08367,-58.9888,-65.6689 0|0:20:15,0,4:15:593:0,4:0,159:-8.6046,-13.12,-61.9232,0,-48.8321,-47.628 0|1:24:20,2,1:20:788:2,1:78,40:-0.385523,0,-64.2186,-3.10938,-61.5253,-67.635 0|0:6:6,0,0:6:243:0,0:0,0:0,-1.80618,-22.2482,-1.80618,-22.2482,-22.2482 dDocent_Contig_15599 19 . C A 168.174 . AB=0.461538;ABP=3.17734;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=33;DPB=33;DPRA=1.95;EPP=16.0391;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=8.67362e-19;PAIRED=0;PAIREDR=0.481481;PAO=0;PQA=0;PQR=0;PRO=0;QA=245;QR=1062;RO=27;RPL=0;RPP=16.0391;RPPR=61.6401;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:7:7,0:7:283:0:0:0,-2.10721,-25.8434 0/0:11:11,0:11:420:0:0:0,-3.31133,-38.1415 0/1:13:7,6:7:279:6:245:-18.5161,0,-21.5673 0/0:2:2,0:2:80:0:0:0,-0.60206,-7.59157 dDocent_Contig_15601 68 . G A 1189.57 . AB=0.54023;ABP=4.23331;AC=4;AF=0.5;AN=8;AO=47;CIGAR=1X;DP=87;DPB=87;DPRA=0;EPP=105.07;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1679;QR=1435;RO=40;RPL=47;RPP=105.07;RPPR=89.8692;RPR=0;RUN=1;SAF=47;SAP=105.07;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:37:9,28:9:333:28:980:-77.365,0,-19.1841 0/1:35:26,9:26:923:9:331:-19.6047,0,-72.8441 0/1:5:1,4:1:37:4:148:-12.1768,0,-2.19268 0/1:10:4,6:4:142:6:220:-17.1435,0,-10.1186 dDocent_Contig_15602 11 . A G 250.736 . AB=0.391304;ABP=5.3706;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X;DP=57;DPB=57;DPRA=2.02941;EPP=22.5536;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=367;QR=1928;RO=48;RPL=0;RPP=22.5536;RPPR=107.241;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:14,9:14:562:9:367:-26.4716,0,-43.998 0/0:10:10,0:10:405:0:0:0,-3.0103,-36.8106 0/0:15:15,0:15:594:0:0:0,-4.51545,-53.7977 0/0:9:9,0:9:367:0:0:0,-2.70927,-33.3953 dDocent_Contig_15603 30 . T A 112.79 . AB=0.222222;ABP=21.1059;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=36;DPB=36;DPRA=1.5;EPP=16.0391;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.166667;PAIREDR=0.633333;PAO=0;PQA=0;PQR=0;PRO=0;QA=246;QR=1189;RO=30;RPL=0;RPP=16.0391;RPPR=68.1545;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:9:9,0:9:354:0:0:0,-2.70927,-32.2209 0/1:18:14,4:14:553:4:164:-9.73136,0,-44.6902 0/1:9:7,2:7:282:2:82:-5.07041,0,-23.0433 ./.:.:.:.:.:.:.:. dDocent_Contig_15604 13 . T C 35.9196 . AB=0.122449;ABP=63.6786;AC=2;AF=0.25;AN=8;AO=6;CIGAR=1X;DP=87;DPB=87;DPRA=1.28947;EPP=16.0391;EPPR=178.9;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.2099;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.950617;PAO=0;PQA=0;PQR=0;PRO=0;QA=233;QR=3231;RO=81;RPL=0;RPP=16.0391;RPPR=178.9;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=81;SRP=178.9;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:38:34,4:34:1365:4:155:-2.88351,0,-111.099 0/0:31:31,0:31:1244:0:0:0,-9.33193,-112.226 0/1:11:9,2:9:350:2:78:-4.09145,0,-28.5422 0/0:7:7,0:7:272:0:0:0,-2.10721,-24.8434 dDocent_Contig_15605 52 . A T 624.112 . AB=0.266667;ABP=45.5712;AC=3;AF=0.375;AN=8;AO=24;CIGAR=10M1X11M;DP=96;DPB=95.6364;DPRA=0;EPP=55.1256;EPPR=131.127;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=891;QR=2180;RO=59;RPL=24;RPP=55.1256;RPPR=131.127;RPR=0;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=59;SRP=131.127;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:41:23,0,16:23:846:0,16:0,587:-41.2327,-48.1564,-117.341,0,-69.3578,-64.5414 0|1:38:29,2,5:29:1069:2,5:82,195:-7.34809,-9.29304,-96.1399,0,-80.708,-85.9742 0|0:6:5,1,0:5:189:1,0:40,0:-2.1895,0,-15.5698,-3.69465,-15.8708,-19.1695 0|1:11:2,5,3:2:76:5,3:204,109:-18.9735,-2.68023,-7.43723,-10.6715,0,-16.0081 dDocent_Contig_15606 125 . A G 31.4287 . AB=0.333333;ABP=4.45795;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X;DP=20;DPB=20;DPRA=1.28571;EPP=7.35324;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=70;QR=628;RO=18;RPL=0;RPP=7.35324;RPPR=42.0968;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=42.0968;SRR=18;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:7:7,0:7:244:0:0:0,-2.10721,-22.3001 0/1:6:4,2:4:139:2:70:-4.84122,0,-11.0465 0/0:2:2,0:2:70:0:0:0,-0.60206,-6.6474 0/0:5:5,0:5:175:0:0:0,-1.50515,-16.0937 dDocent_Contig_15607 28 . G A 1618.9 . AB=0.487395;ABP=3.17453;AC=4;AF=0.5;AN=8;AO=58;CIGAR=1X;DP=119;DPB=119;DPRA=0;EPP=128.956;EPPR=135.47;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2264;QR=2448;RO=61;RPL=0;RPP=128.956;RPPR=135.47;RPR=58;RUN=1;SAF=58;SAP=128.956;SAR=0;SRF=61;SRP=135.47;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:53:34,19:34:1364:19:724:-49.5178,0,-107.062 0/1:51:23,28:23:921:28:1105:-84.3717,0,-67.8411 0/1:3:1,2:1:40:2:81:-6.78264,0,-3.09259 0/1:12:3,9:3:123:9:354:-28.6071,0,-7.85243 dDocent_Contig_15608 29 . A C 137.615 . AB=0.5;ABP=3.0103;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=40;DPB=40;DPRA=1;EPP=13.8677;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=201;QR=1379;RO=35;RPL=0;RPP=13.8677;RPPR=79.0118;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:8:8,0:8:311:0:0:0,-2.40824,-28.3518 0/0:20:20,0:20:794:0:0:0,-6.0206,-71.7762 0/1:10:5,5:5:195:5:201:-15.4602,0,-14.9136 0/0:2:2,0:2:79:0:0:0,-0.60206,-7.49763 dDocent_Contig_15609 128 . A T 1724.11 . AB=0.5;ABP=3.0103;AC=5;AF=0.625;AN=8;AO=65;CIGAR=1X1M1X;DP=120;DPB=120;DPRA=0;EPP=144.156;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2329;QR=2057;RO=55;RPL=0;RPP=144.156;RPPR=122.441;RPR=65;RUN=1;SAF=0;SAP=144.156;SAR=65;SRF=0;SRP=122.441;SRR=55;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:41:10,31:10:381:31:1104:-87.3107,0,-22.3023 0|1:53:37,16:37:1377:16:576:-36.2185,0,-108.257 0|1:16:8,8:8:299:8:281:-20.8114,0,-22.4482 1|1:10:0,10:0:0:10:368:-33.4684,-3.0103,0 dDocent_Contig_15610 73 . A T 196.574 . AB=0.409091;ABP=4.58955;AC=2;AF=0.25;AN=8;AO=9;CIGAR=1X;DP=26;DPB=26;DPRA=5.5;EPP=22.5536;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.823529;PAO=0;PQA=0;PQR=0;PRO=0;QA=322;QR=646;RO=17;RPL=9;RPP=22.5536;RPPR=39.9253;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:6,4:6:230:4:148:-10.6682,0,-18.0553 0/0:1:1,0:1:39:0:0:0,-0.30103,-3.89656 0/1:12:7,5:7:268:5:174:-12.3864,0,-20.87 0/0:3:3,0:3:109:0:0:0,-0.90309,-10.167 dDocent_Contig_15612 10 . C A 1681.02 . AB=0.658824;ABP=21.6339;AC=4;AF=0.5;AN=8;AO=56;CIGAR=1X;DP=85;DPB=85;DPRA=0;EPP=124.613;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2219;QR=1148;RO=29;RPL=0;RPP=124.613;RPPR=65.983;RPR=56;RUN=1;SAF=56;SAP=124.613;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:34:13,21:13:530:21:827:-64.5069,0,-37.8116 0/1:35:10,25:10:384:25:991:-78.9497,0,-24.3675 0/1:3:1,2:1:41:2:81:-6.78264,0,-3.19148 0/1:13:5,8:5:193:8:320:-25.2537,0,-13.8232 dDocent_Contig_15613 15 . T C 129.514 . AB=0.206897;ABP=24.6501;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X3M1X;DP=78;DPB=78;DPRA=1.77551;EPP=16.0391;EPPR=144.156;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=240;QR=2561;RO=65;RPL=0;RPP=16.0391;RPPR=144.156;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=65;SRP=144.156;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:29:18,6,5:18:708:6,5:240,202:-14.3492,0,-56.4213,-3.11255,-41.5718,-59.8382 0|0:22:21,0,1:21:830:0,1:0,41:0,-6.32163,-74.6094,-2.52809,-71.2247,-70.9236 0|0:20:19,0,1:19:752:0,1:0,41:0,-5.71957,-67.5955,-1.92603,-64.2107,-63.9096 0|0:7:7,0,0:7:271:0,0:0,0:0,-2.10721,-24.7536,-2.10721,-24.7536,-24.7536 dDocent_Contig_15614 95 . T C 173.534 . AB=0.346154;ABP=8.35546;AC=2;AF=0.25;AN=8;AO=9;CIGAR=1X;DP=53;DPB=53;DPRA=0.962963;EPP=22.5536;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=310;QR=1565;RO=44;RPL=9;RPP=22.5536;RPPR=98.5551;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:8,5:8:286:5:170:-11.7201,0,-22.1722 0/1:13:9,4:9:319:4:140:-9.03119,0,-25.1385 0/0:20:20,0:20:709:0:0:0,-6.0206,-64.1362 0/0:7:7,0:7:251:0:0:0,-2.10721,-22.9379 dDocent_Contig_15615 1 . N G 150.587 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=7.37776;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=163;QR=0;RO=0;RPL=0;RPP=11.6962;RPPR=0;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:4:0,4:0:0:4:163:-15.0584,-1.20412,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_15616 23 . C T 61.5363 . AB=0.230769;ABP=11.1951;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=29;DPB=29;DPRA=2.4375;EPP=9.52472;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=123;QR=1050;RO=26;RPL=0;RPP=9.52472;RPPR=59.4686;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:10,3:10:409:3:123:-7.5514,0,-33.2572 0/0:8:8,0:8:326:0:0:0,-2.40824,-29.7097 0/0:3:3,0:3:121:0:0:0,-0.90309,-11.2802 0/0:5:5,0:5:194:0:0:0,-1.50515,-17.8276 dDocent_Contig_15618 116 . C T 101.937 . AB=0.8;ABP=6.91895;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=32;DPB=32;DPRA=0.555556;EPP=11.6962;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=136;QR=931;RO=28;RPL=0;RPP=11.6962;RPPR=63.8115;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=63.8115;SRR=28;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:15:15,0:15:497:0:0:0,-4.51545,-45.0468 0/0:9:9,0:9:303:0:0:0,-2.70927,-27.5972 0/0:3:3,0:3:104:0:0:0,-0.90309,-9.70309 0/1:5:1,4:1:27:4:136:-11.0705,0,-1.19463 dDocent_Contig_15619 11 . G A 3030.77 . AB=0.715686;ABP=44.2257;AC=5;AF=0.625;AN=8;AO=95;CIGAR=1X;DP=126;DPB=126;DPRA=0;EPP=209.3;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3822;QR=1226;RO=31;RPL=0;RPP=209.3;RPPR=70.3259;RPR=95;RUN=1;SAF=95;SAP=209.3;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:62:17,45:17:670:45:1799:-143.458,0,-41.9669 0/1:31:11,20:11:445:20:803:-63.2557,0,-31.0738 1/1:24:2,22:2:71:22:893:-73.9355,-0.485293,0 0/1:9:1,8:1:40:8:327:-27.0908,0,-1.28641 dDocent_Contig_15620 12 . G T 126.688 . AB=0.111842;ABP=201.929;AC=1;AF=0.125;AN=8;AO=25;CIGAR=1X;DP=318;DPB=318;DPRA=2.78431;EPP=57.2971;EPPR=639.252;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=974;QR=11633;RO=293;RPL=0;RPP=57.2971;RPPR=639.252;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=293;SRP=639.252;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:152:135,17:135:5368:17:661:-14.0668,0,-437.2 0/0:76:72,4:72:2822:4:156:0,-8.46116,-239.654 0/0:56:52,4:52:2073:4:157:0,-2.34925,-172.244 0/0:34:34,0:34:1370:0:0:0,-10.235,-123.554 dDocent_Contig_15621 11 . G A 592.954 . AB=0.210526;ABP=85.9834;AC=4;AF=0.5;AN=8;AO=24;CIGAR=1X1M;DP=125;DPB=125;DPRA=0;EPP=55.1256;EPPR=198.443;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=967;QR=3611;RO=90;RPL=0;RPP=55.1256;RPPR=198.443;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=90;SRP=198.443;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:13:6,0,7:6:246:0,7:0,278:-21.4742,-23.2804,-43.5907,0,-20.7139,-18.6067 0|1:56:42,1,12:42:1691:1,12:36,486:-27.4485,-37.1576,-176.221,0,-136.447,-135.771 0|1:45:34,6,5:34:1356:6,5:243,203:-9.80172,0,-109.855,-3.29388,-94.9178,-113.451 0|1:11:8,3,0:8:318:3,0:121,0:-7.96887,0,-25.6746,-10.3771,-26.5776,-36.5535 dDocent_Contig_15622 11 . G A 2773.49 . AB=0.666667;ABP=21.1059;AC=5;AF=0.625;AN=8;AO=90;CIGAR=1X;DP=118;DPB=118;DPRA=0;EPP=198.443;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.911111;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3502;QR=1130;RO=28;RPL=0;RPP=198.443;RPPR=63.8115;RPR=90;RUN=1;SAF=90;SAP=198.443;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:6,25:6:238:25:998:-80.7852,0,-12.4607 1/1:43:3,40:3:119:40:1505:-124.61,-1.84928,0 0/1:31:11,20:11:449:20:803:-63.2527,0,-31.4339 0/1:13:8,5:8:324:5:196:-14.0988,0,-25.616 dDocent_Contig_15623 117 . G T 140.802 . AB=0.5;ABP=3.0103;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=25;DPB=25;DPRA=1.84615;EPP=16.0391;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=213;QR=688;RO=19;RPL=0;RPP=16.0391;RPPR=44.2683;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=44.2683;SRR=19;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 0/0:5:5,0:5:183:0:0:0,-1.50515,-16.8268 0/0:8:8,0:8:291:0:0:0,-2.40824,-26.5397 0/1:12:6,6:6:214:6:213:-15.9041,0,-15.9953 dDocent_Contig_15624 10 . C T 1142.59 . 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AB=0.719101;ABP=40.1205;AC=5;AF=0.625;AN=8;AO=69;CIGAR=1X;DP=94;DPB=94;DPRA=0;EPP=152.842;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2778;QR=1020;RO=25;RPL=0;RPP=152.842;RPPR=57.2971;RPR=69;RUN=1;SAF=69;SAP=152.842;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:43:13,30:13:529:30:1217:-96.8561,0,-35.0126 0/1:28:9,19:9:368:19:759:-60.2048,0,-25.0565 0/1:18:3,15:3:123:15:601:-49.0104,0,-6.04625 1/1:5:0,5:0:0:5:201:-18.4705,-1.50515,0 dDocent_Contig_15642 12 . A T 2026.3 . AB=0.588235;ABP=11.0575;AC=4;AF=0.5;AN=8;AO=70;CIGAR=1M1I1X;DP=119;DPB=154;DPRA=0;EPP=155.013;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2717;QR=1961;RO=49;RPL=0;RPP=155.013;RPPR=109.412;RPR=70;RUN=1;SAF=70;SAP=155.013;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:60:16,44:16:639:44:1706:-135.724,0,-39.7826 0|1:27:20,7:20:801:7:268:-16.3533,0,-64.2774 0|1:14:10,4:10:398:4:156:-10.2015,0,-31.9621 0|1:18:3,15:3:123:15:587:-47.7495,0,-6.04625 dDocent_Contig_15643 68 . T C 42.669 . AB=0.25;ABP=9.52472;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X1M1X2M1X1M2X;DP=24;DPB=24;DPRA=2;EPP=9.52472;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=104;QR=711;RO=21;RPL=3;RPP=9.52472;RPPR=48.6112;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. 0|0:7:7,0:7:235:0:0:0,-2.10721,-21.4787 0|1:12:9,3:9:309:3:104:-6.09073,0,-24.5312 0|0:5:5,0:5:167:0:0:0,-1.50515,-15.3592 dDocent_Contig_15645 120 . G T 33.0484 . AB=0.333333;ABP=5.18177;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=23;DPB=23;DPRA=1.28571;EPP=9.52472;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=57.3333;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=84;QR=687;RO=20;RPL=0;RPP=9.52472;RPPR=46.4397;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=46.4397;SRR=20;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 0/0:11:11,0:11:372:0:0:0,-3.31133,-33.8061 0/1:9:6,3:6:210:3:84:-5.12836,0,-16.5332 0/0:3:3,0:3:105:0:0:0,-0.90309,-9.79616 dDocent_Contig_15646 40 . C G 75.5785 . AB=0.166667;ABP=31.9633;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=63;DPB=63;DPRA=2.72727;EPP=13.8677;EPPR=128.956;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=199;QR=2316;RO=58;RPL=0;RPP=13.8677;RPPR=128.956;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:22:22,0:22:875:0:0:0,-6.62266,-79.0572 0/0:9:9,0:9:355:0:0:0,-2.70927,-32.3091 0/1:30:25,5:25:1004:5:199:-9.25654,0,-81.6221 0/0:2:2,0:2:82:0:0:0,-0.60206,-7.77968 dDocent_Contig_15648 83 . C T 352.738 . AB=0.410256;ABP=5.73856;AC=3;AF=0.375;AN=8;AO=16;CIGAR=1X;DP=40;DPB=40;DPRA=13;EPP=37.7539;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=572;QR=930;RO=24;RPL=16;RPP=37.7539;RPPR=55.1256;RPR=0;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:10,11:10:390:11:425:-32.2826,0,-29.1371 0/1:13:10,3:10:385:3:103:-5.6934,0,-31.0931 0/0:1:1,0:1:38:0:0:0,-0.30103,-3.79727 0/1:5:3,2:3:117:2:44:-2.67279,0,-9.40523 dDocent_Contig_15649 98 . N T 135.022 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=139;QR=0;RO=0;RPL=4;RPP=11.6962;RPPR=0;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:69:-6.55266,-0.60206,0 ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:70:-6.6474,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_15650 24 . T A 40.8315 . AB=0.16;ABP=28.1125;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=69;DPB=69;DPRA=1.70455;EPP=11.6962;EPPR=144.156;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=144;QR=2556;RO=65;RPL=0;RPP=11.6962;RPPR=144.156;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=65;SRP=144.156;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:23:23,0:23:916:0:0:0,-6.92369,-82.7443 0/1:25:21,4:21:822:4:144:-5.78206,0,-66.7628 0/0:15:15,0:15:585:0:0:0,-4.51545,-52.982 0/0:6:6,0:6:233:0:0:0,-1.80618,-21.3373 dDocent_Contig_15651 21 . T C 66.4533 . AB=0.181818;ABP=22.3561;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=120;DPB=120;DPRA=0.673469;EPP=11.6962;EPPR=254.901;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.982759;PAO=0;PQA=0;PQR=0;PRO=0;QA=162;QR=4324;RO=116;RPL=0;RPP=11.6962;RPPR=254.901;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=116;SRP=254.901;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:34:34,0:34:1265:0:0:0,-10.235,-114.135 0/0:37:37,0:37:1388:0:0:0,-11.1381,-125.201 0/1:22:18,4:18:684:4:162:-8.3443,0,-55.2691 0/0:27:27,0:27:987:0:0:0,-8.12781,-89.1338 dDocent_Contig_15652 25 . C T 851.665 . AB=0.454545;ABP=4.19474;AC=3;AF=0.375;AN=8;AO=30;CIGAR=1X;DP=89;DPB=89;DPRA=0.956522;EPP=68.1545;EPPR=131.127;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.966102;PAO=0;PQA=0;PQR=0;PRO=0;QA=1215;QR=2368;RO=59;RPL=0;RPP=68.1545;RPPR=131.127;RPR=30;RUN=1;SAF=30;SAP=68.1545;SAR=0;SRF=59;SRP=131.127;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:43:18,25:18:718:25:1012:-78.4284,0,-51.9988 0/0:23:23,0:23:924:0:0:0,-6.92369,-83.4611 0/1:15:12,3:12:488:3:121:-6.76454,0,-39.7558 0/1:8:6,2:6:238:2:82:-5.37144,0,-19.3844 dDocent_Contig_15653 34 . T G 558.904 . AB=0.465116;ABP=3.46479;AC=3;AF=0.375;AN=8;AO=20;CIGAR=1X;DP=54;DPB=54;DPRA=1.30303;EPP=46.4397;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=0;PAIREDR=0.705882;PAO=0;PQA=0;PQR=0;PRO=0;QA=812;QR=1359;RO=34;RPL=0;RPP=46.4397;RPPR=76.8404;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:11,0:11:428:0:0:0,-3.31133,-38.8669 0/1:16:5,11:5:205:11:449:-35.9494,0,-14.0185 0/1:17:15,2:15:606:2:81:-2.56822,0,-49.76 0/1:10:3,7:3:120:7:282:-22.7423,0,-8.17701 dDocent_Contig_15654 167 . A T 36.6583 . AB=0.2;ABP=14.7363;AC=2;AF=0.25;AN=8;AO=3;CIGAR=1X;DP=93;DPB=93;DPRA=0.192308;EPP=9.52472;EPPR=198.443;GTI=0;LEN=1;MEANALT=1;MQM=46;MQMR=57.4222;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=123;QR=3584;RO=90;RPL=3;RPP=9.52472;RPPR=198.443;RPR=0;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=198.443;SRR=90;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:55:55,0:55:2181:0:0:0,-16.5566,-192.305 0/0:23:23,0:23:918:0:0:0,-6.92369,-79.894 0/1:5:4,1:4:159:1:41:-2.47553,0,-13.1863 0/1:10:8,2:8:326:2:82:-4.55299,0,-26.6996 dDocent_Contig_15655 33 . G A 394.303 . AB=0.608696;ABP=5.3706;AC=2;AF=0.25;AN=8;AO=14;CIGAR=1X;DP=36;DPB=36;DPRA=1.76923;EPP=33.4109;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=545;QR=842;RO=22;RPL=0;RPP=33.4109;RPPR=50.7827;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:12:12,0:12:465:0:0:0,-3.61236,-42.1903 0/1:16:3,13:3:120:13:506:-41.0667,0,-6.37121 0/1:7:6,1:6:216:1:39:-1.78935,0,-17.6779 0/0:1:1,0:1:41:0:0:0,-0.30103,-4.09457 dDocent_Contig_15656 24 . G A 214.226 . AB=0.215686;ABP=38.8183;AC=2;AF=0.25;AN=8;AO=11;CIGAR=1X;DP=80;DPB=80;DPRA=1.75862;EPP=26.8965;EPPR=152.842;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=438;QR=2728;RO=69;RPL=0;RPP=26.8965;RPPR=152.842;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=69;SRP=152.842;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:27:27,0:27:1065:0:0:0,-8.12781,-96.1337 0/1:24:19,5:19:748:5:201:-11.2462,0,-60.412 0/1:27:21,6:21:848:6:237:-13.5741,0,-68.5047 0/0:2:2,0:2:67:0:0:0,-0.60206,-6.36069 dDocent_Contig_15657 9 . A G 36.1694 . AB=0.128205;ABP=49.8362;AC=3;AF=0.375;AN=8;AO=5;CIGAR=1X;DP=67;DPB=67;DPRA=0.464286;EPP=13.8677;EPPR=137.642;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.967742;PAO=0;PQA=0;PQR=0;PRO=0;QA=195;QR=2374;RO=62;RPL=0;RPP=13.8677;RPPR=137.642;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:28:28,0:28:1062:0:0:0,-8.42884,-95.8875 0/1:23:21,2:21:807:2:78:-0.479783,0,-66.0319 0/1:9:8,1:8:311:1:39:-1.18729,0,-25.645 0/1:7:5,2:5:194:2:78:-5.29626,0,-15.7256 dDocent_Contig_15659 15 . G A 1699.77 . AB=0.517544;ABP=3.31507;AC=4;AF=0.5;AN=8;AO=59;CIGAR=1X;DP=114;DPB=114;DPRA=0;EPP=131.127;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2337;QR=2193;RO=55;RPL=0;RPP=131.127;RPPR=122.441;RPR=59;RUN=1;SAF=59;SAP=131.127;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:2,13:2:80:13:515:-42.181,0,-3.07634 0/1:52:14,38:14:561:38:1502:-119.769,0,-35.1773 0/1:39:34,5:34:1353:5:202:-6.8217,0,-110.289 0/1:8:5,3:5:199:3:118:-8.59334,0,-15.8797 dDocent_Contig_15660 21 . C T 40.5898 . AB=0.153846;ABP=30.0702;AC=2;AF=0.25;AN=8;AO=4;CIGAR=1X;DP=49;DPB=49;DPRA=1.13043;EPP=11.6962;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.4;PAO=0;PQA=0;PQR=0;PRO=0;QA=161;QR=1811;RO=45;RPL=0;RPP=11.6962;RPPR=100.727;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:15:15,0:15:610:0:0:0,-4.51545,-55.2374 0/1:14:12,2:12:490:2:79:-3.28321,0,-40.2365 0/1:12:10,2:10:403:2:82:-4.16732,0,-33.0172 0/0:8:8,0:8:308:0:0:0,-2.40824,-28.075 dDocent_Contig_15661 24 . C G 178.565 . AB=0.307692;ABP=11.3621;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=68;DPB=68;DPRA=1.85714;EPP=20.3821;EPPR=133.299;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=297;QR=2343;RO=60;RPL=0;RPP=20.3821;RPPR=133.299;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:18,8:18:684:8:297:-19.2544,0,-54.059 0/0:13:13,0:13:512:0:0:0,-3.91339,-46.4285 0/0:3:3,0:3:115:0:0:0,-0.90309,-10.7245 0/0:26:26,0:26:1032:0:0:0,-7.82678,-93.1724 dDocent_Contig_15662 109 . A C 303.599 . AB=0.0909091;ABP=34.9902;AC=0;AF=0;AN=8;AO=2;CIGAR=1X3M1X2M1X2M1X;DP=108;DPB=116.727;DPRA=0;EPP=7.35324;EPPR=148.499;GTI=0;LEN=1;MEANALT=3;MQM=29;MQMR=58.5075;NS=4;NUMALT=5;ODDS=0;PAIRED=0;PAIREDR=0.850746;PAO=12.3333;PQA=276;PQR=0;PRO=0;QA=62;QR=2192;RO=67;RPL=0;RPP=7.35324;RPPR=148.499;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=148.499;SRR=67;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:31:22,0,4,0,2,2:22:727:0,4,0,2,2:0,136,0,70,65:-2.17325,-8.79591,-66.8803,0,-58.0786,-56.8744,-8.79591,-66.8803,-58.0786,-66.8803,-3.09398,-61.1831,-52.3814,-61.1831,-60.5811,-3.54698,-61.6337,-52.8322,-61.6337,-55.9363,-61.0316 0|0:28:17,0,6,2,0,1:17:578:0,6,2,0,1:0,201,70,0,35:-7.34778,-12.4653,-59.3713,0,-46.9048,-45.0986,-6.7643,-53.6739,-41.2075,-53.0718,-12.4653,-59.3713,-46.9048,-53.6739,-59.3713,-9.61492,-56.5226,-44.0561,-50.8251,-56.5226,-56.2216 0|0:27:18,0,1,0,1,6:18:552:0,1,0,1,6:0,31,0,25,208:-11.4958,-16.9143,-60.8357,-14.7995,-58.719,-58.418,-16.9143,-60.8357,-58.719,-60.8357,-14.9696,-58.8887,-56.7721,-58.8887,-58.5876,0,-43.9233,-41.8068,-43.9233,-41.9765,-42.1172 0|0:22:10,2,9,0,0,0:10:335:2,9,0,0,0:62,301,0,0,0:-16.6736,-15.5222,-42.0853,0,-23.0342,-24.4827,-19.6839,-42.6874,-27.192,-46.8459,-19.6839,-42.6874,-27.192,-46.8459,-46.8459,-19.6839,-42.6874,-27.192,-46.8459,-46.8459,-46.8459 dDocent_Contig_15664 37 . T C 68.736 . AB=0.181818;ABP=22.3561;AC=2;AF=0.25;AN=8;AO=4;CIGAR=1X;DP=48;DPB=48;DPRA=0.846154;EPP=11.6962;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.772727;PAO=0;PQA=0;PQR=0;PRO=0;QA=162;QR=1755;RO=44;RPL=0;RPP=11.6962;RPPR=98.5551;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:13:13,0:13:525:0:0:0,-3.91339,-47.5939 0/0:13:13,0:13:525:0:0:0,-3.91339,-47.5954 0/1:9:6,3:6:242:3:121:-8.57093,0,-19.4477 0/1:13:12,1:12:463:1:41:-0.181177,0,-38.0984 dDocent_Contig_15665 19 . T C 2189.05 . AB=0.569231;ABP=8.42228;AC=4;AF=0.5;AN=8;AO=74;CIGAR=1X;DP=130;DPB=130;DPRA=0;EPP=163.699;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2935;QR=2201;RO=56;RPL=0;RPP=163.699;RPPR=124.613;RPR=74;RUN=1;SAF=74;SAP=163.699;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:46:20,26:20:775:26:1024:-78.6092,0,-56.2121 0/1:53:23,30:23:913:30:1180:-90.5062,0,-66.5182 0/1:18:7,11:7:283:11:447:-35.1675,0,-20.4248 0/1:13:6,7:6:230:7:284:-22.0204,0,-17.1469 dDocent_Contig_15666 39 . T G 1143.54 . AB=0.0517241;ABP=104.246;AC=4;AF=0.5;AN=8;AO=3;CIGAR=2X;DP=214;DPB=214;DPRA=0;EPP=9.52472;EPPR=343.931;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=59.9108;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.88535;PAO=0;PQA=0;PQR=0;PRO=0;QA=123;QR=6192;RO=157;RPL=0;RPP=9.52472;RPPR=343.931;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=157;SRP=343.931;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:88:60,26,0:60:2394:26,0:1039,0:-67.4287,0,-189.32,-85.4905,-197.147,-282.648 0|1:58:48,7,3:48:1902:7,3:278,123:-8.41659,0,-154.422,-12.7099,-146.377,-168.349 0|1:35:26,9,0:26:1021:9,0:339,0:-20.2941,0,-81.6079,-28.1209,-84.3171,-112.058 0|1:33:23,10,0:23:875:10,0:391,0:-25.6121,0,-69.1297,-32.5358,-72.14,-104.288 dDocent_Contig_15667 21 . C T 42.7455 . AB=0.333333;ABP=4.45795;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X;DP=60;DPB=60;DPRA=0.333333;EPP=7.35324;EPPR=128.956;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.982759;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=2325;RO=58;RPL=0;RPP=7.35324;RPPR=128.956;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:19:19,0:19:767:0:0:0,-5.71957,-69.3507 0/0:10:10,0:10:409:0:0:0,-3.0103,-37.1706 0/0:25:25,0:25:990:0:0:0,-7.52575,-89.3927 0/1:6:4,2:4:159:2:82:-5.9735,0,-12.8859 dDocent_Contig_15668 200 . T C 115.986 . AB=0.222222;ABP=21.1059;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=39;DPB=39;DPRA=4.5;EPP=16.0391;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=58.5758;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.939394;PAO=0;PQA=0;PQR=0;PRO=0;QA=232;QR=1261;RO=33;RPL=6;RPP=16.0391;RPPR=74.6689;RPR=0;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=74.6689;SRR=33;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:21,6:21:801:6:232:-13.1211,0,-64.2847 0/0:10:10,0:10:382:0:0:0,-3.0103,-34.0119 ./.:.:.:.:.:.:.:. 0/0:2:2,0:2:78:0:0:0,-0.60206,-7.40347 dDocent_Contig_15670 8 . T A 249.523 . AB=0.213115;ABP=46.6177;AC=4;AF=0.5;AN=8;AO=17;CIGAR=2X;DP=143;DPB=143;DPRA=0;EPP=39.9253;EPPR=274.444;GTI=0;LEN=1;MEANALT=1.25;MQM=41.0588;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=652;QR=4773;RO=125;RPL=0;RPP=39.9253;RPPR=274.444;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=125;SRP=274.444;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:81:78,3:78:2975:3:117:0,-14.1743,-257.716 0|1:53:43,9:43:1650:9:348:-13.8279,0,-132.722 0|1:8:4,4:4:148:4:149:-10.9342,0,-11.2728 1|1:1:0,1:0:0:1:38:-3.58758,-0.30103,0 dDocent_Contig_15671 27 . G A 247.299 . AB=0.727273;ABP=7.94546;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=42;DPB=42;DPRA=1.06452;EPP=20.3821;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.911765;PAO=0;PQA=0;PQR=0;PRO=0;QA=323;QR=1329;RO=34;RPL=0;RPP=20.3821;RPPR=76.8404;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:3,8:3:108:8:323:-26.1278,0,-6.76168 0/0:20:20,0:20:784:0:0:0,-6.0206,-70.8776 0/0:5:5,0:5:199:0:0:0,-1.50515,-18.2886 0/0:6:6,0:6:238:0:0:0,-1.80618,-21.7934 dDocent_Contig_15672 37 . T G 153.315 . AB=0.75;ABP=7.35324;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=56;DPB=56;DPRA=0.5;EPP=16.0391;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=57.84;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.92;PAO=0;PQA=0;PQR=0;PRO=0;QA=209;QR=1872;RO=50;RPL=0;RPP=16.0391;RPPR=111.584;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:8:2,6:2:75:6:209:-16.7293,0,-4.7121 0/0:30:30,0:30:1122:0:0:0,-9.0309,-99.1674 0/0:11:11,0:11:409:0:0:0,-3.31133,-37.1535 0/0:7:7,0:7:266:0:0:0,-2.10721,-24.3012 dDocent_Contig_15673 24 . C T 190.572 . AB=0.236842;ABP=25.8679;AC=2;AF=0.25;AN=8;AO=9;CIGAR=1X;DP=41;DPB=41;DPRA=12.6667;EPP=22.5536;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=368;QR=1292;RO=32;RPL=0;RPP=22.5536;RPPR=72.4974;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:18,4:18:733:4:163:-8.43577,0,-59.6708 0/1:16:11,5:11:438:5:205:-14.0185,0,-34.9562 0/0:2:2,0:2:80:0:0:0,-0.60206,-7.59157 0/0:1:1,0:1:41:0:0:0,-0.30103,-4.09457 dDocent_Contig_15674 25 . C A 82.4208 . AB=0.222222;ABP=15.074;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=53;DPB=53;DPRA=1.54286;EPP=11.6962;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=163;QR=1965;RO=49;RPL=0;RPP=11.6962;RPPR=109.412;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:14,4:14:566:4:163:-9.63989,0,-45.8635 0/0:19:19,0:19:765:0:0:0,-5.71957,-69.1712 0/0:13:13,0:13:513:0:0:0,-3.91339,-46.5162 0/0:3:3,0:3:121:0:0:0,-0.90309,-11.2802 dDocent_Contig_15675 44 . C T 30.5125 . AB=0.136364;ABP=28.2783;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1M1I5M1X;DP=103;DPB=103.429;DPRA=0.814815;EPP=9.52472;EPPR=213.643;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.515464;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=3792;RO=97;RPL=0;RPP=9.52472;RPPR=213.643;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=97;SRP=213.643;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:44:42,0:42:1640:0:0:0,-12.6433,-147.447 0|0:25:25,0:25:992:0:0:0,-7.52575,-89.5833 0|1:22:19,3:19:731:3:122:-4.74983,0,-59.4914 0|0:12:11,0:11:429:0:0:0,-3.31133,-38.6094 dDocent_Contig_15676 11 . G T 192.085 . AB=0.411765;ABP=4.1599;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=45;DPB=45;DPRA=2.21429;EPP=20.3821;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=0.945946;PAO=0;PQA=0;PQR=0;PRO=0;QA=324;QR=1497;RO=37;RPL=0;RPP=20.3821;RPPR=83.3548;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:7:7,0:7:287:0:0:0,-2.10721,-26.2052 0/0:14:13,1:13:526:1:39:0,-0.317855,-43.7899 0/1:17:10,7:10:398:7:285:-20.9069,0,-31.0611 0/0:7:7,0:7:286:0:0:0,-2.10721,-26.1148 dDocent_Contig_15678 77 . T C 2012.95 . AB=0.634146;ABP=9.41879;AC=6;AF=0.75;AN=8;AO=69;CIGAR=1X;DP=84;DPB=84;DPRA=0;EPP=152.842;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2397;QR=524;RO=15;RPL=69;RPP=152.842;RPPR=35.5824;RPR=0;RUN=1;SAF=69;SAP=152.842;SAR=0;SRF=15;SRP=35.5824;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:30:0,30:0:0:30:1047:-94.5426,-9.0309,0 1/1:13:0,13:0:0:13:447:-40.5595,-3.91339,0 0/1:19:5,14:5:174:14:490:-38.713,0,-10.2824 0/1:22:10,12:10:350:12:413:-30.8779,0,-25.2149 dDocent_Contig_15679 99 . N G 65.5375 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=4X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=69;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. 1|1:2:0,2:0:0:2:69:-6.55266,-0.60206,0 .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. dDocent_Contig_15681 71 . T G 101.317 . AB=0.12963;ABP=67.3502;AC=5;AF=0.625;AN=8;AO=8;CIGAR=1X;DP=55;DPB=55;DPRA=0;EPP=20.3821;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=325;QR=1877;RO=47;RPL=8;RPP=20.3821;RPPR=105.07;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:25,4:25:1003:4:164:-6.42003,0,-81.8351 1/1:1:0,1:0:0:1:40:-3.99568,-0.30103,0 0/1:3:2,1:2:82:1:40:-3.09259,0,-6.87659 0/1:22:20,2:20:792:2:81:-1.06307,0,-64.9756 dDocent_Contig_15682 43 . C T 79.1718 . AB=0.266667;ABP=10.1038;AC=2;AF=0.25;AN=8;AO=4;CIGAR=1X;DP=26;DPB=26;DPRA=1.36364;EPP=11.6962;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.75;PAIREDR=0.772727;PAO=0;PQA=0;PQR=0;PRO=0;QA=163;QR=885;RO=22;RPL=0;RPP=11.6962;RPPR=50.7827;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:7:4,3:4:158:3:122:-9.26528,0,-12.4914 0/0:4:4,0:4:164:0:0:0,-1.20412,-15.1499 0/0:7:7,0:7:283:0:0:0,-2.10721,-25.8436 0/1:8:7,1:7:280:1:41:-1.68633,0,-23.1635 dDocent_Contig_15684 10 . A G 152.233 . AB=0.205128;ABP=32.4644;AC=2;AF=0.25;AN=8;AO=9;CIGAR=1X;DP=72;DPB=72;DPRA=0.929825;EPP=22.5536;EPPR=139.813;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.984127;PAO=0;PQA=0;PQR=0;PRO=0;QA=352;QR=2501;RO=63;RPL=0;RPP=22.5536;RPPR=139.813;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=63;SRP=139.813;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:19,2:19:749:2:67:-0.0390591,0,-61.4069 0/0:19:19,0:19:754:0:0:0,-5.71957,-68.1815 0/1:18:12,6:12:474:6:244:-16.9203,0,-37.5915 0/0:14:13,1:13:524:1:41:0,-0.119853,-43.4129 dDocent_Contig_15685 14 . C T 46.2733 . AB=0;ABP=0;AC=2;AF=0.333333;AN=6;AO=2;CIGAR=1X;DP=14;DPB=14;DPRA=0.333333;EPP=3.0103;EPPR=29.068;GTI=0;LEN=1;MEANALT=1;MQM=22;MQMR=60;NS=3;NUMALT=1;ODDS=1.69407e-21;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=75;QR=480;RO=12;RPL=0;RPP=7.35324;RPPR=29.068;RPR=2;RUN=1;SAF=1;SAP=3.0103;SAR=1;SRF=12;SRP=29.068;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:75:-4.14978,-0.60206,0 0/0:7:7,0:7:280:0:0:0,-2.10721,-25.5707 0/0:5:5,0:5:200:0:0:0,-1.50515,-18.3795 ./.:.:.:.:.:.:.:. dDocent_Contig_15686 36 . G A 106.509 . AB=0.3;ABP=6.48466;AC=3;AF=0.5;AN=6;AO=4;CIGAR=1X;DP=37;DPB=37;DPRA=0.211538;EPP=11.6962;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=160;QR=1310;RO=33;RPL=0;RPP=11.6962;RPPR=74.6689;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 0/0:26:26,0:26:1042:0:0:0,-7.82678,-94.0702 0/1:10:7,3:7:268:3:120:-8.17739,0,-21.4679 1/1:1:0,1:0:0:1:40:-3.99568,-0.30103,0 dDocent_Contig_15687 9 . A C 544.531 . AB=0.0979228;ABP=476.23;AC=2;AF=0.25;AN=8;AO=37;CIGAR=1M1X4M;DP=400;DPB=397;DPRA=0;EPP=83.3548;EPPR=667.481;GTI=0;LEN=1;MEANALT=4.25;MQM=60;MQMR=60;NS=4;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=0.970588;PAO=0;PQA=0;PQR=0;PRO=0;QA=1432;QR=11938;RO=306;RPL=0;RPP=83.3548;RPPR=667.481;RPR=37;RUN=1;SAF=37;SAP=83.3548;SAR=0;SRF=306;SRP=667.481;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:100:80,2,3,8,4:80:3135:2,3,8,4:80,116,310,156:-1.38577,-18.8766,-276.077,-15.94,-267.151,-272.838,0,-251.211,-248.273,-255.393,-12.6458,-263.857,-260.919,-244.979,-269.243 0|0:123:94,5,6,3,12:94:3660:5,6,3,12:196,232,117,485:-11.6928,-23.8726,-323.154,-20.9451,-305.612,-319.924,-30.3728,-315.041,-312.113,-330.256,0,-284.673,-281.744,-291.173,-297.178 0|1:114:79,5,8,22,0:79:3072:5,8,22,0:195,288,851,0:-46.1316,-53.8834,-304.83,-46.4267,-282.845,-296.465,0,-236.432,-228.97,-245.837,-69.913,-306.335,-298.873,-252.46,-322.363 0|0:63:53,5,0,4,0:53:2071:5,0,4,0:194,0,154,0:0,-0.0162469,-168.775,-15.9546,-170.28,-186.219,-3.31258,-157.635,-173.575,-172.37,-15.9546,-170.28,-186.219,-173.575,-186.219 dDocent_Contig_15689 39 . A G 41.9099 . AB=0.108108;ABP=101.724;AC=2;AF=0.25;AN=8;AO=8;CIGAR=1X;DP=89;DPB=89;DPRA=4.93333;EPP=20.3821;EPPR=178.9;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=323;QR=3184;RO=81;RPL=0;RPP=20.3821;RPPR=178.9;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=81;SRP=178.9;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:34:30,4:30:1186:4:164:-4.91488,0,-96.7793 0/1:40:36,4:36:1424:4:159:-2.65024,0,-116.372 0/0:9:9,0:9:340:0:0:0,-2.70927,-30.947 0/0:6:6,0:6:234:0:0:0,-1.80618,-21.4278 dDocent_Contig_15691 20 . G T 60.693 . AB=0.173913;ABP=24.253;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=95;DPB=95;DPRA=0.958333;EPP=11.6962;EPPR=200.614;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=159;QR=3656;RO=91;RPL=0;RPP=11.6962;RPPR=200.614;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=91;SRP=200.614;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:31:31,0:31:1244:0:0:0,-9.33193,-112.232 0/1:23:19,4:19:768:4:159:-7.76826,0,-62.5157 0/0:30:30,0:30:1204:0:0:0,-9.0309,-108.634 0/0:11:11,0:11:440:0:0:0,-3.31133,-39.9549 dDocent_Contig_15692 30 . A G 110.907 . AB=0.206897;ABP=24.6501;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=105;DPB=105;DPRA=2.28125;EPP=20.3821;EPPR=172.452;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.625;PAIREDR=0.814433;PAO=0;PQA=0;PQR=0;PRO=0;QA=311;QR=3796;RO=97;RPL=0;RPP=20.3821;RPPR=213.643;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=92;SRP=172.452;SRR=5;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:18:18,0:18:706:0:0:0,-5.41854,-63.8714 0/0:14:14,0:14:548:0:0:0,-4.21442,-49.6619 0/1:29:23,6:23:912:6:235:-12.7896,0,-73.6597 0/0:44:42,2:42:1630:2:76:0,-6.03051,-139.734 dDocent_Contig_15693 96 . G A 64.5896 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X1M1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=68;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:2:0,2:0:0:2:68:-6.45788,-0.60206,0 .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. dDocent_Contig_15694 26 . A G 516.887 . AB=0.454545;ABP=3.20771;AC=3;AF=0.5;AN=6;AO=16;CIGAR=1X;DP=42;DPB=42;DPRA=0.55;EPP=37.7539;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=620;QR=1045;RO=26;RPL=0;RPP=37.7539;RPPR=59.4686;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:11:0,11:0:0:11:421:-38.2346,-3.31133,0 ./.:.:.:.:.:.:.:. 0/0:20:20,0:20:805:0:0:0,-6.0206,-72.7668 0/1:11:6,5:6:240:5:199:-14.977,0,-18.6632 dDocent_Contig_15696 98 . N T 97.967 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=0.333333;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=105;QR=0;RO=0;RPL=3;RPP=9.52472;RPPR=0;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:105:-9.79616,-0.90309,0 ./.:.:.:.:.:.:.:. dDocent_Contig_15697 30 . A G 540.454 . AB=0.323077;ABP=20.6827;AC=1;AF=0.125;AN=8;AO=21;CIGAR=1X;DP=94;DPB=94;DPRA=6.72414;EPP=48.6112;EPPR=161.528;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=830;QR=2847;RO=73;RPL=0;RPP=48.6112;RPPR=161.528;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=73;SRP=161.528;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:65:44,21:44:1722:21:830:-55.4431,0,-135.647 0/0:19:19,0:19:727:0:0:0,-5.71957,-65.7473 0/0:8:8,0:8:319:0:0:0,-2.40824,-29.0778 0/0:2:2,0:2:79:0:0:0,-0.60206,-7.49724 dDocent_Contig_15698 1 . N G 113.73 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:122:-11.3725,-0.90309,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_15699 35 . A T 118.883 . AB=0.170732;ABP=41.6201;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=47;DPB=47;DPRA=13.6667;EPP=18.2106;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=282;QR=1595;RO=40;RPL=0;RPP=18.2106;RPPR=89.8692;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 0/1:41:34,7:34:1352:7:282:-13.4104,0,-109.599 0/0:5:5,0:5:203:0:0:0,-1.50515,-18.6531 0/0:1:1,0:1:40:0:0:0,-0.30103,-3.99568 dDocent_Contig_15701 171 . A G 99.5669 . AB=0.333333;ABP=5.9056;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=39;DPB=39;DPRA=1.33333;EPP=11.6962;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=162;QR=1361;RO=35;RPL=4;RPP=11.6962;RPPR=79.0118;RPR=0;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=79.0118;SRR=35;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:8,4:8:300:4:162:-11.3546,0,-23.735 0/0:15:15,0:15:597:0:0:0,-4.51545,-54.07 0/0:6:6,0:6:236:0:0:0,-1.80618,-21.6123 0/0:6:6,0:6:228:0:0:0,-1.80618,-20.8805 dDocent_Contig_15703 209 . N G 74.0438 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=78;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:78:-7.4033,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_15704 86 . C A 69.6346 . AB=0.307692;ABP=7.18621;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=44;DPB=44;DPRA=1.25806;EPP=11.6962;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=136;QR=1422;RO=40;RPL=4;RPP=11.6962;RPPR=89.8692;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:12:12,0:12:422:0:0:0,-3.61236,-38.3154 0/0:10:10,0:10:358:0:0:0,-3.0103,-32.5629 0/1:13:9,4:9:322:4:136:-8.66243,0,-25.4108 0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1426 dDocent_Contig_15705 26 . C G 169.765 . AB=0.192982;ABP=49.6779;AC=3;AF=0.375;AN=8;AO=12;CIGAR=1X1M1X1M1X;DP=74;DPB=74;DPRA=0;EPP=29.068;EPPR=131.127;GTI=0;LEN=1;MEANALT=1.75;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.666667;PAIREDR=0.847458;PAO=0;PQA=0;PQR=0;PRO=0;QA=463;QR=2244;RO=59;RPL=0;RPP=29.068;RPPR=131.127;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=59;SRP=131.127;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:14:11,2:11:410:2:79:-3.18633,0,-32.9332 0|1:30:21,7:21:806:7:270:-15.8749,0,-64.081 0|1:13:11,2:11:411:2:76:-3.30087,0,-33.419 0|0:17:16,1:16:617:1:38:0,-1.32024,-52.0712 dDocent_Contig_15706 10 . A C 995.558 . AB=0.530303;ABP=3.53672;AC=4;AF=0.5;AN=8;AO=35;CIGAR=1X;DP=66;DPB=66;DPRA=0;EPP=79.0118;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=58.6571;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.685714;PAIREDR=0.83871;PAO=0;PQA=0;PQR=0;PRO=0;QA=1401;QR=1245;RO=31;RPL=0;RPP=79.0118;RPPR=70.3259;RPR=35;RUN=1;SAF=35;SAP=79.0118;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:5,11:5:198:11:444:-35.4988,0,-13.38 0/1:16:6,10:6:244:10:399:-30.7304,0,-17.5223 0/1:19:13,6:13:517:6:241:-16.3471,0,-41.1534 0/1:15:7,8:7:286:8:317:-24.3775,0,-21.5994 dDocent_Contig_15707 51 . C T 449.884 . AB=0.382353;ABP=7.09778;AC=4;AF=0.5;AN=8;AO=16;CIGAR=1X;DP=79;DPB=79;DPRA=0.293651;EPP=37.7539;EPPR=139.813;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=639;QR=2493;RO=63;RPL=16;RPP=37.7539;RPPR=139.813;RPR=0;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=63;SRP=139.813;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:42:42,0:42:1663:0:0:0,-12.6433,-149.9 0/1:8:5,3:5:202:3:110:-7.84803,0,-16.1536 1/1:3:0,3:0:0:3:123:-11.4648,-0.90309,0 0/1:26:16,10:16:628:10:406:-29.0734,0,-49.0235 dDocent_Contig_15708 126 . T C 161.541 . AB=0.28125;ABP=16.3106;AC=2;AF=0.25;AN=8;AO=9;CIGAR=1X;DP=39;DPB=39;DPRA=4.57143;EPP=22.5536;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=314;QR=1053;RO=30;RPL=0;RPP=22.5536;RPPR=68.1545;RPR=9;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=68.1545;SRR=30;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:9,7:9:312:7:244:-17.4836,0,-23.5981 0/0:6:6,0:6:215:0:0:0,-1.80618,-19.6992 0/1:16:14,2:14:491:2:70:-1.83092,0,-39.705 0/0:1:1,0:1:35:0:0:0,-0.30103,-3.49863 dDocent_Contig_15709 9 . A T 212.605 . AB=0.234043;ABP=31.8863;AC=2;AF=0.25;AN=8;AO=11;CIGAR=1X;DP=82;DPB=82;DPRA=1.34286;EPP=26.8965;EPPR=157.185;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.422535;PAO=0;PQA=0;PQR=0;PRO=0;QA=423;QR=2728;RO=71;RPL=0;RPP=26.8965;RPPR=157.185;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=71;SRP=157.185;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:32:26,6:26:1000:6:233:-11.7071,0,-80.6788 0/1:15:10,5:10:385:5:190:-12.9513,0,-30.4908 0/0:25:25,0:25:957:0:0:0,-7.52575,-86.4416 0/0:10:10,0:10:386:0:0:0,-3.0103,-35.0966 dDocent_Contig_15710 9 . A G 1080.03 . AB=0.411765;ABP=6.45911;AC=5;AF=0.625;AN=8;AO=38;CIGAR=1X;DP=69;DPB=69;DPRA=0;EPP=85.5263;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.552632;PAIREDR=0.774194;PAO=0;PQA=0;PQR=0;PRO=0;QA=1458;QR=1194;RO=31;RPL=0;RPP=85.5263;RPPR=70.3259;RPR=38;RUN=1;SAF=38;SAP=85.5263;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:18:1,17:1:39:17:661:-55.9306,-1.52198,0 0/1:28:15,13:15:579:13:485:-35.5591,0,-44.0239 0/1:16:12,4:12:459:4:156:-9.60081,0,-36.8435 0/1:7:3,4:3:117:4:156:-12.3101,0,-8.80317 dDocent_Contig_15711 15 . T A 72.6542 . AB=0.375;ABP=4.09604;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=36;DPB=36;DPRA=0.857143;EPP=9.52472;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.818182;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=1337;RO=33;RPL=0;RPP=9.52472;RPPR=74.6689;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:12:12,0:12:487:0:0:0,-3.61236,-44.1811 0/0:13:13,0:13:523:0:0:0,-3.91339,-47.4169 0/1:8:5,3:5:204:3:122:-8.96425,0,-16.3358 0/0:3:3,0:3:123:0:0:0,-0.90309,-11.4648 dDocent_Contig_15713 108 . C T 117.003 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=4;CIGAR=2X1D6M;DP=4;DPB=3.55556;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=120;QR=0;RO=0;RPL=0;RPP=11.6962;RPPR=0;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:2:0,2:0:0:2:61:-5.79402,-0.60206,0 .:.:.:.:.:.:.:. 1|1:2:0,2:0:0:2:59:-5.60414,-0.60206,0 .:.:.:.:.:.:.:. dDocent_Contig_15715 124 . G A 93.3397 . AB=0.275862;ABP=15.6647;AC=3;AF=0.375;AN=8;AO=8;CIGAR=1M1I2M1X1M1X1M3X3M1X;DP=38;DPB=38.5714;DPRA=1.07407;EPP=20.3821;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=35.375;MQMR=59.5862;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.896552;PAO=0;PQA=0;PQR=0;PRO=0;QA=254;QR=975;RO=29;RPL=0;RPP=20.3821;RPPR=65.983;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=65.983;SRR=29;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:8:4,4:4:138:4:125:-8.75915,0,-10.3522 0|0:9:8,0:8:273:0:0:0,-2.40824,-24.5507 0|1:14:11,3:11:367:3:96:-3.9651,0,-29.1375 0|1:7:6,1:6:197:1:33:-0.780481,0,-15.9455 dDocent_Contig_15717 107 . N C 68.3781 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=72;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_15719 54 . A G 1026.22 . AB=0.595745;ABP=6.75262;AC=6;AF=0.75;AN=8;AO=34;CIGAR=1X1M1X;DP=53;DPB=53;DPRA=0;EPP=76.8404;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.735294;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1319;QR=652;RO=19;RPL=34;RPP=76.8404;RPPR=44.2683;RPR=0;RUN=1;SAF=34;SAP=76.8404;SAR=0;SRF=0;SRP=44.2683;SRR=19;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:5:0,5:0:0:5:196:-18.0139,-1.50515,0 0|1:22:8,14:8:274:14:549:-43.13,0,-18.3712 1|1:1:0,1:0:0:1:41:-4.09457,-0.30103,0 0|1:25:11,14:11:378:14:533:-40.7806,0,-26.8258 dDocent_Contig_15720 33 . A G 208.619 . AB=0.310345;ABP=12.0706;AC=3;AF=0.375;AN=8;AO=9;CIGAR=1X;DP=35;DPB=35;DPRA=1.61111;EPP=22.5536;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.884615;PAO=0;PQA=0;PQR=0;PRO=0;QA=362;QR=1004;RO=26;RPL=0;RPP=22.5536;RPPR=59.4686;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:8,7:8:293:7:280:-21.055,0,-22.1938 0/1:11:10,1:10:403:1:41:-0.783237,0,-33.3187 0/0:6:6,0:6:230:0:0:0,-1.80618,-21.0653 0/1:3:2,1:2:78:1:41:-3.19148,0,-6.49969 dDocent_Contig_15723 9 . A T 2663.24 . AB=0.0769231;ABP=83.8559;AC=0;AF=0;AN=8;AO=4;CIGAR=4M1X6M2X3M;DP=205;DPB=199.625;DPRA=0;EPP=11.6962;EPPR=150.67;GTI=0;LEN=1;MEANALT=7;MQM=60;MQMR=60;NS=4;NUMALT=4;ODDS=2.77556e-17;PAIRED=1;PAIREDR=0.882353;PAO=0;PQA=0;PQR=0;PRO=0;QA=155;QR=2681;RO=68;RPL=0;RPP=11.6962;RPPR=150.67;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=68;SRP=150.67;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:41:11,4,23,0,0:11:439:4,23,0,0:156,870,0,0:-67.0891,-57.5746,-92.5351,0,-23.3467,-29.2463,-70.4005,-93.7392,-36.17,-106.564,-70.4005,-93.7392,-36.17,-106.564,-106.564 0|0:55:19,0,36,0,0:19:750:0,36,0,0:0,1382,0,0:-107.88,-113.6,-175.318,0,-62.1085,-51.2715,-113.6,-175.318,-62.1085,-175.318,-113.6,-175.318,-62.1085,-175.318,-175.318 0|0:57:27,0,16,0,2:27:1064:0,16,0,2:0,597,0,76:-40.7297,-48.8576,-136.405,0,-87.5493,-82.7328,-48.8576,-136.405,-87.5493,-136.405,-42.6243,-130.173,-81.3169,-130.173,-129.571 0|0:52:11,4,20,4,8:11:428:4,20,4,8:154,749,155,311:-58.0226,-48.6889,-82.6592,0,-22.5289,-29.1526,-48.5991,-71.1288,-22.4391,-82.5695,-35.7744,-58.3045,-9.61522,-58.2147,-68.5412 dDocent_Contig_15724 162 . G A 82.292 . AB=0.75;ABP=5.18177;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=19;DPB=19;DPRA=0.533333;EPP=9.52472;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=58.6875;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=120;QR=647;RO=16;RPL=3;RPP=9.52472;RPPR=37.7539;RPR=0;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=37.7539;SRR=16;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:10:10,0:10:406:0:0:0,-3.0103,-36.9 ./.:.:.:.:.:.:.:. 0/1:4:1,3:1:37:3:120:-9.98357,0,-2.28347 0/0:5:5,0:5:204:0:0:0,-1.50515,-18.744 dDocent_Contig_15725 34 . T A 150.778 . AB=0.833333;ABP=8.80089;AC=3;AF=0.375;AN=8;AO=5;CIGAR=1X2M1X;DP=42;DPB=42;DPRA=0.5;EPP=13.8677;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=196;QR=1289;RO=36;RPL=0;RPP=13.8677;RPPR=81.1833;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:6:1,5:1:37:5:196:-16.2069,0,-1.89165 0|0:28:28,0:28:999:0:0:0,-8.42884,-90.2217 0|0:7:7,0:7:253:0:0:0,-2.10721,-23.1198 1|1:1:0,0:0:0:0:0:0,0,0 dDocent_Contig_15727 11 . T G 359.014 . AB=0.205128;ABP=32.4644;AC=2;AF=0.25;AN=8;AO=8;CIGAR=1M2X;DP=46;DPB=49;DPRA=1.85714;EPP=20.3821;EPPR=65.983;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.75;PAIREDR=0.517241;PAO=0;PQA=0;PQR=0;PRO=0;QA=316;QR=1128;RO=29;RPL=0;RPP=20.3821;RPPR=65.983;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:12:3,8,1:3:120:8,1:303,40:-23.9185,0,-7.477,-21.5242,-6.59016,-31.1142 0|1:17:12,0,5:12:464:0,5:0,196:-12.8974,-16.5098,-54.6156,0,-38.4959,-36.9908 0|0:7:7,0,0:7:275:0,0:0,0:0,-2.10721,-25.1191,-2.10721,-25.1191,-25.1191 0|1:10:7,1,2:7:269:1,2:40,80:-4.48295,-3.29508,-25.0649,0,-18.7723,-21.4673 dDocent_Contig_15728 35 . C A 50.1899 . AB=0.166667;ABP=31.9633;AC=3;AF=0.375;AN=8;AO=6;CIGAR=1X;DP=51;DPB=51;DPRA=0;EPP=16.0391;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=238;QR=1759;RO=45;RPL=0;RPP=16.0391;RPPR=100.727;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:13,2:13:516:2:82:-3.26423,0,-42.2706 0/1:9:7,2:7:285:2:82:-5.07041,0,-23.3151 0/0:21:20,1:20:755:1:37:0,-2.6238,-64.555 0/1:6:5,1:5:203:1:37:-1.89165,0,-16.8469 dDocent_Contig_15729 7 . A G 70.813 . AB=0.210526;ABP=30.668;AC=3;AF=0.375;AN=8;AO=8;CIGAR=1X;DP=46;DPB=46;DPRA=1.58333;EPP=20.3821;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=0.75;PAIREDR=0.789474;PAO=0;PQA=0;PQR=0;PRO=0;QA=254;QR=1443;RO=38;RPL=0;RPP=20.3821;RPPR=85.5263;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:10,3:10:364:3:116:-6.90431,0,-29.1849 0/1:12:9,3:9:350:3:76:-3.48011,0,-28.249 0/1:13:11,2:11:425:2:62:-1.97442,0,-34.691 0/0:8:8,0:8:304:0:0:0,-2.40824,-27.7184 dDocent_Contig_15730 108 . C G 250.886 . AB=0.329897;ABP=27.389;AC=3;AF=0.375;AN=8;AO=40;CIGAR=1X4M;DP=157;DPB=157;DPRA=0;EPP=89.8692;EPPR=246.215;GTI=0;LEN=1;MEANALT=1.75;MQM=23.525;MQMR=47.6607;NS=4;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0.142857;PAO=0;PQA=0;PQR=0;PRO=0;QA=933;QR=3777;RO=112;RPL=0;RPP=89.8692;RPPR=246.215;RPR=40;RUN=1;SAF=0;SAP=89.8692;SAR=40;SRF=0;SRP=246.215;SRR=112;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:60:48,3,8:48:1627:3,8:105,184:0,-9.72681,-139.827,-2.24618,-128.541,-130.847 0|1:45:30,0,15:30:1003:0,15:0,331:-12.4124,-21.4433,-101.346,0,-80.1398,-75.6244 0|1:30:16,0,13:16:544:0,13:0,304:-15.2473,-20.0638,-62.2448,0,-42.3517,-38.4383 0|1:22:18,0,4:18:603:0,4:0,114:-2.81032,-8.22886,-56.8045,0,-48.8447,-47.6406 dDocent_Contig_15731 48 . G A 47.8273 . AB=0.5;ABP=3.0103;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X;DP=31;DPB=31;DPRA=0.444444;EPP=7.35324;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=1155;RO=29;RPL=0;RPP=7.35324;RPPR=65.983;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:4:4,0:4:157:0:0:0,-1.20412,-14.5072 0/0:11:11,0:11:441:0:0:0,-3.31133,-40.0448 0/0:12:12,0:12:479:0:0:0,-3.61236,-43.4615 0/1:4:2,2:2:78:2:81:-6.48161,0,-6.19866 dDocent_Contig_15732 50 . C T 622.544 . AB=0.389831;ABP=9.23028;AC=2;AF=0.25;AN=8;AO=23;CIGAR=1X;DP=103;DPB=103;DPRA=1.34091;EPP=52.9542;EPPR=176.728;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=919;QR=3142;RO=80;RPL=23;RPP=52.9542;RPPR=176.728;RPR=0;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=80;SRP=176.728;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:50:29,21:29:1125:21:840:-60.8637,0,-86.4723 0/0:41:41,0:41:1636:0:0:0,-12.3422,-147.469 0/1:9:7,2:7:262:2:79:-4.78836,0,-21.2232 0/0:3:3,0:3:119:0:0:0,-0.90309,-11.095 dDocent_Contig_15733 98 . N T 215.56 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=7;CIGAR=1X;DP=7;DPB=7;DPRA=0;EPP=18.2106;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=229;QR=0;RO=0;RPL=7;RPP=18.2106;RPPR=0;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:5:0,5:0:0:5:165:-15.1757,-1.50515,0 ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:64:-6.07866,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_15734 1 . N G 112.807 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=121;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:121:-11.2802,-0.90309,0 ./.:.:.:.:.:.:.:. dDocent_Contig_15735 16 . G C 181.788 . AB=0.2;ABP=18.6449;AC=3;AF=0.375;AN=8;AO=8;CIGAR=1X;DP=38;DPB=38;DPRA=12.3333;EPP=20.3821;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=317;QR=1196;RO=30;RPL=0;RPP=20.3821;RPPR=68.1545;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:14:13,1:13:514:1:41:0,-0.119853,-42.5094 0/1:20:16,4:16:644:4:164:-9.1293,0,-52.2734 1/1:3:0,3:0:0:3:112:-10.4459,-0.90309,0 0/0:1:1,0:1:38:0:0:0,-0.30103,-3.79727 dDocent_Contig_15737 131 . C T 35.6628 . AB=0.285714;ABP=5.80219;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=20;DPB=20;DPRA=1.07692;EPP=7.35324;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=79;QR=719;RO=18;RPL=0;RPP=7.35324;RPPR=42.0968;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=42.0968;SRR=18;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:6:6,0:6:245:0:0:0,-1.80618,-22.4295 0/0:7:7,0:7:270:0:0:0,-2.10721,-24.6603 0/1:7:5,2:5:204:2:79:-5.39003,0,-16.6368 ./.:.:.:.:.:.:.:. dDocent_Contig_15738 130 . C G 336.249 . AB=0.52;ABP=3.09716;AC=1;AF=0.125;AN=8;AO=13;CIGAR=1X;DP=74;DPB=74;DPRA=1.53061;EPP=31.2394;EPPR=135.47;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=469;QR=2218;RO=61;RPL=0;RPP=31.2394;RPPR=135.47;RPR=13;RUN=1;SAF=0;SAP=31.2394;SAR=13;SRF=0;SRP=135.47;SRR=61;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:12,13:12:431:13:469:-35.0229,0,-31.6033 0/0:22:22,0:22:793:0:0:0,-6.62266,-71.6902 0/0:12:12,0:12:441:0:0:0,-3.61236,-40.0348 0/0:15:15,0:15:553:0:0:0,-4.51545,-50.1099 dDocent_Contig_15739 9 . T C 150.714 . AB=0.285714;ABP=14.1779;AC=3;AF=0.375;AN=8;AO=8;CIGAR=1X;DP=35;DPB=35;DPRA=1.33333;EPP=20.3821;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=308;QR=1027;RO=27;RPL=0;RPP=20.3821;RPPR=61.6401;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:7:7,0:7:266:0:0:0,-2.10721,-24.3005 0/1:13:9,4:9:347:4:152:-10.1358,0,-27.6763 0/1:10:7,3:7:258:3:117:-7.90008,0,-20.563 0/1:5:4,1:4:156:1:39:-2.39141,0,-12.9121 dDocent_Contig_15740 78 . C T 95.7532 . AB=0.444444;ABP=3.25157;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=34;DPB=34;DPRA=1.08;EPP=11.6962;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=148;QR=1096;RO=30;RPL=4;RPP=11.6962;RPPR=68.1545;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:5,4:5:185:4:148:-10.9727,0,-14.3007 0/0:12:12,0:12:440:0:0:0,-3.61236,-39.9442 0/0:12:12,0:12:434:0:0:0,-3.61236,-39.4011 0/0:1:1,0:1:37:0:0:0,-0.30103,-3.69783 dDocent_Contig_15741 49 . G C 213.979 . AB=0.207547;ABP=42.3836;AC=2;AF=0.25;AN=8;AO=14;CIGAR=1X;DP=98;DPB=98;DPRA=0;EPP=33.4109;EPPR=185.414;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.72619;PAO=0;PQA=0;PQR=0;PRO=0;QA=554;QR=3329;RO=84;RPL=0;RPP=33.4109;RPPR=185.414;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=84;SRP=185.414;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:20:19,1:19:746:1:41:0,-1.92603,-63.3637 0/0:25:23,2:23:919:2:76:0,-0.312213,-75.7994 0/1:34:31,3:31:1225:3:121:-1.04518,0,-100.29 0/1:19:11,8:11:439:8:316:-23.0845,0,-34.1447 dDocent_Contig_15742 35 . G T 286.698 . AB=0.217391;ABP=50.8771;AC=4;AF=0.5;AN=8;AO=15;CIGAR=1X;DP=69;DPB=69;DPRA=0;EPP=35.5824;EPPR=120.27;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.933333;PAIREDR=0.777778;PAO=0;PQA=0;PQR=0;PRO=0;QA=604;QR=2158;RO=54;RPL=0;RPP=35.5824;RPPR=120.27;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:9,1:9:363:1:41:-1.08427,0,-30.024 0/1:11:9,2:9:361:2:80:-4.28025,0,-29.5431 0/1:25:19,6:19:756:6:244:-14.8131,0,-60.8327 0/1:23:17,6:17:678:6:239:-14.9609,0,-54.4267 dDocent_Contig_15744 16 . C A 173.551 . AB=0.411765;ABP=4.1599;AC=2;AF=0.25;AN=8;AO=7;CIGAR=1X;DP=38;DPB=38;DPRA=0.809524;EPP=18.2106;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.857143;PAIREDR=0.966667;PAO=0;PQA=0;PQR=0;PRO=0;QA=280;QR=1204;RO=30;RPL=0;RPP=18.2106;RPPR=68.1545;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:10:10,0:10:402:0:0:0,-3.0103,-36.5383 0/1:12:6,5:6:242:5:198:-14.4785,0,-18.4373 0/0:11:11,0:11:441:0:0:0,-3.31133,-40.0444 0/1:5:3,2:3:119:2:82:-6.27453,0,-9.58986 dDocent_Contig_15745 59 . G T 611.167 . AB=0.342466;ABP=18.746;AC=4;AF=0.5;AN=8;AO=25;CIGAR=1X;DP=73;DPB=73;DPRA=0;EPP=57.2971;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=989;QR=1899;RO=48;RPL=25;RPP=57.2971;RPPR=107.241;RPR=0;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:15,16:15:604:16:637:-48.3337,0,-45.3674 0/1:17:13,4:13:496:4:153:-9.02192,0,-39.8569 0/1:21:18,3:18:718:3:120:-4.86568,0,-58.6254 0/1:4:2,2:2:81:2:79:-6.29312,0,-6.48161 dDocent_Contig_15746 107 . N T 217.475 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=7;CIGAR=2X1I2M;DP=7;DPB=8.75;DPRA=0;EPP=18.2106;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=221;QR=0;RO=0;RPL=0;RPP=18.2106;RPPR=0;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:2:0,2:0:0:2:66:-6.26818,-0.60206,0 1|1:1:0,1:0:0:1:31:-3.09945,-0.30103,0 1|1:2:0,2:0:0:2:55:-5.22366,-0.60206,0 1|1:2:0,2:0:0:2:69:-6.55266,-0.60206,0 dDocent_Contig_15747 83 . T C 118.802 . AB=0.363636;ABP=4.78696;AC=3;AF=0.5;AN=6;AO=6;CIGAR=1X;DP=24;DPB=24;DPRA=0;EPP=16.0391;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.666667;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=213;QR=626;RO=18;RPL=6;RPP=16.0391;RPPR=42.0968;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:7,4:7:248:4:144:-10.0023,0,-19.3531 0/0:12:11,1:11:378:1:35:0,-0.113731,-30.8515 1/1:1:0,1:0:0:1:34:-3.39891,-0.30103,0 ./.:.:.:.:.:.:.:. dDocent_Contig_15748 9 . T A 55.5978 . AB=0.25;ABP=9.52472;AC=1;AF=0.125;AN=8;AO=3;CIGAR=2X3M1X2M2X3M1X1M1X;DP=67;DPB=67;DPRA=0.654545;EPP=9.52472;EPPR=128.956;GTI=0;LEN=1;MEANALT=1;MQM=53;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.862069;PAO=0;PQA=0;PQR=0;PRO=0;QA=117;QR=2263;RO=58;RPL=0;RPP=9.52472;RPPR=128.956;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:18:15,2,0:15:580:2,0:33,0:0,-2.66358,-49.9572,-4.51545,-50.5592,-52.3682 0|0:23:22,0,0:22:853:0,0:0,0:0,-6.62266,-76.6965,-6.62266,-76.6965,-76.6965 0|0:14:12,2,0:12:477:2,0:49,0:0,-0.129902,-39.1981,-3.61236,-39.8002,-43.0417 0|1:12:9,0,3:9:353:0,3:0,117:-7.25795,-9.96721,-39.0005,0,-29.4224,-28.5193 dDocent_Contig_15749 17 . G T 108.419 . AB=0.25;ABP=13.8677;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=62;DPB=62;DPRA=1.95238;EPP=16.0391;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.946429;PAO=0;PQA=0;PQR=0;PRO=0;QA=243;QR=2231;RO=56;RPL=0;RPP=16.0391;RPPR=124.613;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:10:10,0:10:399:0:0:0,-3.0103,-36.2679 0/0:21:20,1:20:810:1:41:0,-2.22706,-69.1209 0/1:20:15,5:15:604:5:202:-12.5409,0,-48.6775 0/0:11:11,0:11:418:0:0:0,-3.31133,-37.9653 dDocent_Contig_15750 15 . T C 740.724 . AB=0.648649;ABP=10.1116;AC=1;AF=0.125;AN=8;AO=26;CIGAR=1X;DP=86;DPB=86;DPRA=3.09524;EPP=59.4686;EPPR=133.299;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1037;QR=2393;RO=60;RPL=0;RPP=59.4686;RPPR=133.299;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:37:13,24:13:520:24:959:-75.4702,0,-36.0085 0/0:28:26,2:26:1042:2:78:0,-1.02554,-86.6704 0/0:10:10,0:10:400:0:0:0,-3.0103,-36.3591 0/0:11:11,0:11:431:0:0:0,-3.31133,-39.1371 dDocent_Contig_15751 97 . A G 527.367 . AB=0;ABP=0;AC=2;AF=0.25;AN=8;AO=20;CIGAR=1X;DP=97;DPB=97;DPRA=0.88;EPP=46.4397;EPPR=170.214;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=652;QR=2606;RO=77;RPL=20;RPP=46.4397;RPPR=170.214;RPR=0;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=77;SRP=170.214;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:27:27,0:27:939:0:0:0,-8.12781,-84.8257 1/1:22:2,20:2:69:20:652:-52.4347,-0.0699968,0 0/0:36:36,0:36:1194:0:0:0,-10.8371,-107.758 0/0:12:12,0:12:404:0:0:0,-3.61236,-36.6844 dDocent_Contig_15756 17 . C A 135 . AB=0.242424;ABP=22.0271;AC=3;AF=0.375;AN=8;AO=8;CIGAR=1X;DP=43;DPB=43;DPRA=1.1;EPP=20.3821;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=298;QR=1400;RO=35;RPL=0;RPP=20.3821;RPPR=79.0118;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:12,5:12:483:5:196:-12.8972,0,-38.7036 0/1:10:9,1:9:353:1:41:-1.08427,0,-29.1202 0/0:10:10,0:10:400:0:0:0,-3.0103,-36.3573 0/1:6:4,2:4:164:2:61:-3.98665,0,-13.3437 dDocent_Contig_15757 33 . C A 33.7162 . AB=0.222222;ABP=9.04217;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X;DP=55;DPB=55;DPRA=0.586957;EPP=7.35324;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=2108;RO=53;RPL=0;RPP=7.35324;RPPR=118.098;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:21:21,0:21:835:0:0:0,-6.32163,-75.4571 0/0:14:14,0:14:557:0:0:0,-4.21442,-50.4717 0/0:11:11,0:11:435:0:0:0,-3.31133,-39.5001 0/1:9:7,2:7:281:2:82:-5.07041,0,-22.9524 dDocent_Contig_15758 17 . T C 1183.01 . AB=0.190909;ABP=94.2911;AC=4;AF=0.5;AN=8;AO=21;CIGAR=1X5M;DP=110;DPB=110;DPRA=0;EPP=48.6112;EPPR=126.784;GTI=0;LEN=1;MEANALT=1.75;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=835;QR=2254;RO=57;RPL=0;RPP=48.6112;RPPR=126.784;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:47:19,22,6:19:751:22,6:862,245:-65.1451,0,-55.1686,-50.6457,-41.5727,-110.642 0|1:25:13,0,12:13:511:0,12:0,472:-35.3017,-39.2151,-81.2454,0,-42.4231,-38.8108 0|1:33:22,9,2:22:873:9,2:356,77:-22.6825,0,-69.1656,-22.985,-65.5537,-94.2479 0|1:5:3,1,1:3:119:1,1:36,41:-2.50581,-0.496292,-9.98103,0,-6.89468,-9.52196 dDocent_Contig_15759 195 . G A 63.5328 . AB=0.272727;ABP=7.94546;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=23;DPB=23;DPRA=1.83333;EPP=9.52472;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=120;QR=802;RO=20;RPL=3;RPP=9.52472;RPPR=46.4397;RPR=0;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=46.4397;SRR=20;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:8,3:8:316:3:120:-7.87598,0,-25.4887 0/0:9:9,0:9:363:0:0:0,-2.70927,-33.0343 ./.:.:.:.:.:.:.:. 0/0:3:3,0:3:123:0:0:0,-0.90309,-11.4648 dDocent_Contig_15761 106 . N A 65.5375 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=2X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=69;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. 1|1:2:0,2:0:0:2:69:-6.55266,-0.60206,0 .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. dDocent_Contig_15762 10 . G A 148.048 . AB=0.28;ABP=13.5202;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=130;DPB=130;DPRA=0.714286;EPP=18.2106;EPPR=270.101;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.99187;PAO=0;PQA=0;PQR=0;PRO=0;QA=263;QR=4625;RO=123;RPL=0;RPP=18.2106;RPPR=270.101;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=123;SRP=270.101;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:39:39,0:39:1493:0:0:0,-11.7402,-134.64 0/1:25:18,7:18:694:7:263:-16.5038,0,-55.2657 0/0:55:55,0:55:2020:0:0:0,-16.5566,-182.031 0/0:11:11,0:11:418:0:0:0,-3.31133,-37.9695 dDocent_Contig_15763 51 . C G 559.243 . AB=0.857143;ABP=26.2761;AC=1;AF=0.166667;AN=6;AO=18;CIGAR=1X;DP=68;DPB=68;DPRA=0.893617;EPP=42.0968;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=0.8;PAO=0;PQA=0;PQR=0;PRO=0;QA=705;QR=1976;RO=50;RPL=18;RPP=42.0968;RPPR=111.584;RPR=0;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:3,18:3:118:18:705:-57.4469,0,-4.67995 ./.:.:.:.:.:.:.:. 0/0:23:23,0:23:901:0:0:0,-6.92369,-81.3929 0/0:24:24,0:24:957:0:0:0,-7.22472,-86.427 dDocent_Contig_15764 15 . A G 206.252 . AB=0.22449;ABP=35.3165;AC=3;AF=0.375;AN=8;AO=11;CIGAR=1X;DP=64;DPB=64;DPRA=1.08889;EPP=26.8965;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.735849;PAO=0;PQA=0;PQR=0;PRO=0;QA=440;QR=2148;RO=53;RPL=0;RPP=26.8965;RPPR=118.098;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:16,6:16:652:6:235:-14.8972,0,-52.3901 0/0:15:15,0:15:608:0:0:0,-4.51545,-55.0583 0/1:24:21,3:21:848:3:123:-4.24007,0,-69.408 0/1:3:1,2:1:40:2:82:-6.87659,0,-3.09259 dDocent_Contig_15765 31 . A G 69.3197 . AB=0.333333;ABP=5.18177;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=20;DPB=20;DPRA=1.63636;EPP=9.52472;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=123;QR=644;RO=17;RPL=0;RPP=9.52472;RPPR=39.9253;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:9:9,0:9:344:0:0:0,-2.70927,-31.3101 ./.:.:.:.:.:.:.:. 0/1:9:6,3:6:224:3:123:-8.75552,0,-17.8036 0/0:2:2,0:2:76:0:0:0,-0.60206,-7.21426 dDocent_Contig_15766 170 . A T 51.2564 . AB=0.2;ABP=14.7363;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=24;DPB=24;DPRA=3.33333;EPP=9.52472;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.952381;PAO=0;PQA=0;PQR=0;PRO=0;QA=123;QR=849;RO=21;RPL=3;RPP=9.52472;RPPR=48.6112;RPR=0;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=48.6112;SRR=21;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 0/0:6:6,0:6:246:0:0:0,-1.80618,-22.5201 0/1:15:12,3:12:480:3:123:-6.94934,0,-39.0345 0/0:3:3,0:3:123:0:0:0,-0.90309,-11.4648 dDocent_Contig_15767 33 . A C 658.182 . AB=0;ABP=0;AC=2;AF=0.25;AN=8;AO=18;CIGAR=1X;DP=67;DPB=67;DPRA=1.10204;EPP=42.0968;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=721;QR=1935;RO=49;RPL=0;RPP=42.0968;RPPR=109.412;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:18:0,18:0:0:18:721:-65.2162,-5.41854,0 0/0:14:14,0:14:556:0:0:0,-4.21442,-50.3816 0/0:25:25,0:25:989:0:0:0,-7.52575,-89.2982 0/0:10:10,0:10:390:0:0:0,-3.0103,-35.4515 dDocent_Contig_15768 21 . A G 1564.56 . AB=0.466102;ABP=4.18805;AC=4;AF=0.5;AN=8;AO=55;CIGAR=1X;DP=118;DPB=118;DPRA=0;EPP=122.441;EPPR=139.813;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.745455;PAIREDR=0.888889;PAO=0;PQA=0;PQR=0;PRO=0;QA=2200;QR=2492;RO=63;RPL=0;RPP=122.441;RPPR=139.813;RPR=55;RUN=1;SAF=55;SAP=122.441;SAR=0;SRF=63;SRP=139.813;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:40:19,21:19:759:21:835:-63.4219,0,-56.593 0/1:37:20,17:20:791:17:682:-50.5717,0,-60.3726 0/1:25:15,10:15:594:10:401:-28.9239,0,-46.2728 0/1:16:9,7:9:348:7:282:-20.9363,0,-26.8617 dDocent_Contig_15769 23 . G A 69.724 . AB=0.190476;ABP=20.4855;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=46;DPB=46;DPRA=2.52;EPP=11.6962;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.666667;PAO=0;PQA=0;PQR=0;PRO=0;QA=159;QR=1696;RO=42;RPL=0;RPP=11.6962;RPPR=94.2121;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:17,4:17:681:4:159:-8.37032,0,-55.2981 0/0:10:10,0:10:409:0:0:0,-3.0103,-37.1706 0/0:6:6,0:6:239:0:0:0,-1.80618,-21.8832 0/0:9:9,0:9:367:0:0:0,-2.70927,-33.3953 dDocent_Contig_15771 24 . T G 2440.56 . AB=0.272727;ABP=17.8158;AC=6;AF=0.75;AN=8;AO=77;CIGAR=1X;DP=106;DPB=106;DPRA=0;EPP=170.214;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3054;QR=1143;RO=29;RPL=0;RPP=170.214;RPPR=65.983;RPR=77;RUN=1;SAF=77;SAP=170.214;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:5:0,5:0:0:5:200:-18.3797,-1.50515,0 1/1:68:5,63:5:204:63:2501:-206.486,-1.72601,0 0/1:16:11,5:11:433:5:192:-12.8304,0,-34.5084 0/1:17:13,4:13:506:4:161:-9.75776,0,-40.7657 dDocent_Contig_15772 134 . A T 189.606 . AB=0;ABP=0;AC=4;AF=0.5;AN=8;AO=7;CIGAR=1X;DP=84;DPB=84;DPRA=0.884058;EPP=10.7656;EPPR=170.214;GTI=0;LEN=1;MEANALT=1;MQM=38.8571;MQMR=60;NS=4;NUMALT=1;ODDS=4.33681e-19;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=257;QR=2857;RO=77;RPL=0;RPP=18.2106;RPPR=170.214;RPR=7;RUN=1;SAF=1;SAP=10.7656;SAR=6;SRF=0;SRP=170.214;SRR=77;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:74:-7.01226,-0.60206,0 0/0:55:54,1:54:2017:1:37:0,-13.4759,-178.69 1/1:4:0,4:0:0:4:146:-11.3459,-1.20412,0 0/0:23:23,0:23:840:0:0:0,-6.92369,-75.9126 dDocent_Contig_15773 109 . C A 212.794 . AB=0.275862;ABP=15.6647;AC=5;AF=0.625;AN=8;AO=12;CIGAR=1X1M1X;DP=33;DPB=33;DPRA=0;EPP=29.068;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=369;QR=702;RO=21;RPL=0;RPP=29.068;RPPR=48.6112;RPR=12;RUN=1;SAF=0;SAP=29.068;SAR=12;SRF=0;SRP=48.6112;SRR=21;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:5:3,2:3:105:2:68:-4.95273,0,-8.29101 0|1:16:11,5:11:358:5:143:-8.33662,0,-27.718 1|1:4:0,4:0:0:4:123:-11.3746,-1.20412,0 0|1:8:7,1:7:239:1:35:-1.09039,0,-19.4356 dDocent_Contig_15775 188 . A G 652.639 . AB=0.363636;ABP=4.78696;AC=5;AF=0.625;AN=8;AO=19;CIGAR=1X;DP=51;DPB=51;DPRA=0.346667;EPP=44.2683;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=765;QR=1257;RO=32;RPL=19;RPP=44.2683;RPPR=72.4974;RPR=0;RUN=1;SAF=0;SAP=44.2683;SAR=19;SRF=0;SRP=72.4974;SRR=32;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:8:0,8:0:0:8:322:-29.3472,-2.40824,0 1/1:7:0,7:0:0:7:283:-25.843,-2.10721,0 0/0:25:25,0:25:978:0:0:0,-7.52575,-88.3189 0/1:11:7,4:7:279:4:160:-11.4716,0,-22.17 dDocent_Contig_15776 21 . A G 438.233 . AB=0.290323;ABP=26.6864;AC=2;AF=0.25;AN=8;AO=18;CIGAR=1X;DP=96;DPB=96;DPRA=1.82353;EPP=42.0968;EPPR=172.385;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.948718;PAO=0;PQA=0;PQR=0;PRO=0;QA=724;QR=3082;RO=78;RPL=0;RPP=42.0968;RPPR=172.385;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=78;SRP=172.385;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:41:29,12:29:1161:12:486:-31.7496,0,-92.4312 0/1:21:15,6:15:588:6:238:-15.4716,0,-46.9329 0/0:24:24,0:24:932:0:0:0,-7.22472,-84.1894 0/0:10:10,0:10:401:0:0:0,-3.0103,-36.4505 dDocent_Contig_15777 22 . G A 560.56 . AB=0.252427;ABP=57.8452;AC=4;AF=0.5;AN=8;AO=26;CIGAR=1X;DP=103;DPB=103;DPRA=0;EPP=59.4686;EPPR=161.641;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=56.8442;NS=4;NUMALT=1;ODDS=0;PAIRED=0.961538;PAIREDR=0.818182;PAO=0;PQA=0;PQR=0;PRO=0;QA=1033;QR=3066;RO=77;RPL=0;RPP=59.4686;RPPR=170.214;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=76;SRP=161.641;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:19,12:19:749:12:472:-33.493,0,-48.8156 0/1:25:21,4:21:841:4:156:-6.89045,0,-68.2533 0/1:39:31,8:31:1231:8:323:-17.699,0,-97.9551 0/1:8:6,2:6:245:2:82:-5.37144,0,-20.0212 dDocent_Contig_15778 43 . A G 133.517 . AB=0.180328;ABP=57.1547;AC=3;AF=0.5;AN=6;AO=11;CIGAR=1X;DP=61;DPB=61;DPRA=0;EPP=12.6832;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=52.7273;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=441;QR=1982;RO=50;RPL=2;RPP=12.6832;RPPR=111.584;RPR=9;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:33:27,6:27:1064:6:244:-8.74027,0,-86.1108 0/1:23:19,4:19:760:4:160:-7.85742,0,-61.7986 ./.:.:.:.:.:.:.:. 0/1:5:4,1:4:158:1:37:-2.19268,0,-13.0953 dDocent_Contig_15779 9 . T C 169.592 . AB=0.666667;ABP=5.18177;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=97;DPB=97;DPRA=0.306818;EPP=16.0391;EPPR=200.614;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=230;QR=3247;RO=91;RPL=0;RPP=16.0391;RPPR=200.614;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=91;SRP=200.614;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:3,6:3:117:6:230:-18.3571,0,-8.20111 0/0:64:64,0:64:2262:0:0:0,-19.2659,-203.82 0/0:20:20,0:20:722:0:0:0,-6.0206,-65.302 0/0:4:4,0:4:146:0:0:0,-1.20412,-13.4973 dDocent_Contig_15781 19 . T C 677.446 . AB=0.307692;ABP=32.2417;AC=3;AF=0.375;AN=8;AO=28;CIGAR=1X1M1X;DP=106;DPB=106;DPRA=2.02222;EPP=63.8115;EPPR=155.459;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.75;PAIREDR=0.692308;PAO=0;PQA=0;PQR=0;PRO=0;QA=1105;QR=3078;RO=78;RPL=0;RPP=63.8115;RPPR=172.385;RPR=28;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=76;SRP=155.459;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:29:22,7:22:868:7:281:-16.9325,0,-69.7012 0|1:23:17,6:17:671:6:242:-15.2328,0,-53.7959 0|0:15:15,0:15:591:0:0:0,-4.51545,-53.5277 0|1:39:24,15:24:948:15:582:-40.9773,0,-73.8806 dDocent_Contig_15782 19 . A C 35.7877 . AB=0.25;ABP=7.35324;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X;DP=89;DPB=89;DPRA=0.296296;EPP=7.35324;EPPR=191.928;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=8.67362e-19;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=3432;RO=87;RPL=0;RPP=7.35324;RPPR=191.928;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=87;SRP=191.928;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:33:33,0:33:1314:0:0:0,-9.93399,-118.525 0/0:45:45,0:45:1769:0:0:0,-13.5463,-159.44 0/1:8:6,2:6:232:2:81:-5.27749,0,-18.8399 0/0:3:3,0:3:117:0:0:0,-0.90309,-10.9102 dDocent_Contig_15783 115 . C T 60.6486 . AB=0.130435;ABP=84.8654;AC=1;AF=0.125;AN=8;AO=10;CIGAR=1X;DP=156;DPB=156;DPRA=1.4;EPP=16.9077;EPPR=56.5535;GTI=0;LEN=1;MEANALT=1;MQM=59.1;MQMR=43.1507;NS=4;NUMALT=1;ODDS=0;PAIRED=0.9;PAIREDR=0.417808;PAO=0;PQA=0;PQR=0;PRO=0;QA=350;QR=5497;RO=146;RPL=0;RPP=24.725;RPPR=320.045;RPR=10;RUN=1;SAF=1;SAP=16.9077;SAR=9;SRF=103;SRP=56.5535;SRR=43;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:69:60,9:60:2267:9:310:-7.4628,0,-159.344 0/0:22:22,0:22:824:0:0:0,-6.62266,-63.8967 0/0:43:43,0:43:1631:0:0:0,-12.9443,-111.064 0/0:22:21,1:21:775:1:40:0,-2.65585,-54.2494 dDocent_Contig_15784 32 . G C 36.7679 . AB=0.157895;ABP=22.325;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=44;DPB=44;DPRA=2.28;EPP=9.52472;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.682927;PAO=0;PQA=0;PQR=0;PRO=0;QA=119;QR=1637;RO=41;RPL=0;RPP=9.52472;RPPR=92.0407;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:14:14,0:14:555:0:0:0,-4.21442,-50.2921 0/0:5:5,0:5:203:0:0:0,-1.50515,-18.6531 0/1:19:16,3:16:636:3:119:-5.37561,0,-51.854 0/0:6:6,0:6:243:0:0:0,-1.80618,-22.2482 dDocent_Contig_15786 7 . A C 120.566 . AB=0.1;ABP=30.8051;AC=0;AF=0;AN=8;AO=2;CIGAR=1X3M1X2M1X;DP=62;DPB=62;DPRA=1.53846;EPP=7.35324;EPPR=115.927;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=80;QR=2021;RO=52;RPL=0;RPP=7.35324;RPPR=115.927;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:18:13,0,5:13:504:0,5:0,204:-13.3255,-17.2389,-58.6299,0,-41.7929,-40.2877 0|0:20:16,2,2:16:620:2,2:80,81:-1.86515,-0.0939437,-50.41,0,-44.3309,-50.3204 0|0:13:13,0,0:13:509:0,0:0,0:0,-3.91339,-46.1588,-3.91339,-46.1588,-46.1588 0|0:11:10,0,1:10:388:0,1:0,41:-0.783237,-3.79354,-35.6523,0,-32.2663,-31.9652 dDocent_Contig_15788 111 . A G 34.4372 . AB=0.4;ABP=3.44459;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X;DP=28;DPB=28;DPRA=0.652174;EPP=7.35324;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=70;QR=914;RO=26;RPL=0;RPP=7.35324;RPPR=59.4686;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=59.4686;SRR=26;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:15:15,0:15:522:0:0:0,-4.51545,-47.3082 0/0:6:6,0:6:214:0:0:0,-1.80618,-19.6078 0/1:5:3,2:3:107:2:70:-5.14225,0,-8.47702 0/0:2:2,0:2:71:0:0:0,-0.60206,-6.74206 dDocent_Contig_15790 11 . C A 177.036 . AB=0.266667;ABP=17.1973;AC=2;AF=0.25;AN=8;AO=13;CIGAR=1X;DP=102;DPB=102;DPRA=0;EPP=31.2394;EPPR=196.271;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.977528;PAO=0;PQA=0;PQR=0;PRO=0;QA=506;QR=3501;RO=89;RPL=0;RPP=31.2394;RPPR=196.271;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=89;SRP=196.271;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:54:50,4:50:1951:4:154:0,-2.02203,-161.568 0/1:19:12,7:12:476:7:275:-19.3992,0,-37.4724 0/0:18:17,1:17:677:1:39:0,-1.52198,-57.365 0/1:11:10,1:10:397:1:38:-0.485939,0,-32.774 dDocent_Contig_15791 7 . A T 909.516 . AB=0;ABP=0;AC=0;AF=0;AN=8;AO=2;CIGAR=1X3M1I2M;DP=82;DPB=82.3333;DPRA=1.38889;EPP=7.35324;EPPR=109.412;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=76;QR=1872;RO=49;RPL=0;RPP=7.35324;RPPR=109.412;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:25:1,2,22:1:38:2,22:76,853:-73.2945,-67.3633,-69.8774,-3.50615,-0.389771,0 0|0:31:23,0,8:23:878:0,8:0,311:-19.0224,-25.9461,-97.9737,0,-72.4143,-70.006 0|0:18:18,0,0:18:684:0,0:0,0:0,-5.41854,-61.8924,-5.41854,-61.8924,-61.8924 0|0:8:7,0,1:7:272:0,1:0,39:-1.48832,-3.59553,-25.9461,0,-22.74,-22.439 dDocent_Contig_15792 141 . C G 666.204 . AB=0.807692;ABP=24.391;AC=1;AF=0.166667;AN=6;AO=21;CIGAR=1X;DP=67;DPB=67;DPRA=1.26829;EPP=48.6112;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=844;QR=1838;RO=46;RPL=0;RPP=48.6112;RPPR=102.898;RPR=21;RUN=1;SAF=0;SAP=48.6112;SAR=21;SRF=0;SRP=102.898;SRR=46;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:25:25,0:25:997:0:0:0,-7.52575,-90.0219 0/1:26:5,21:5:191:21:844:-68.4443,0,-9.72503 0/0:16:16,0:16:650:0:0:0,-4.81648,-58.8322 ./.:.:.:.:.:.:.:. dDocent_Contig_15793 59 . A G 186.706 . AB=0.153846;ABP=16.5402;AC=0;AF=0;AN=8;AO=2;CIGAR=1M1D3M1X3M;DP=39;DPB=37.6667;DPRA=1.08333;EPP=7.35324;EPPR=61.6401;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=78;QR=1068;RO=27;RPL=2;RPP=7.35324;RPPR=61.6401;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:12:12,0,0:12:474:0,0:0,0:0,-3.61236,-43.0117,-3.61236,-43.0117,-43.0117 0|0:6:3,0,3:3:118:0,3:0,104:-7.89423,-8.79732,-18.5274,0,-10.0998,-9.19671 0|0:8:4,0,4:4:161:0,4:0,130:-9.60623,-10.8104,-24.1183,0,-13.6714,-12.4672 0|0:13:8,2,3:8:315:2,3:78,110:-6.56776,-2.55511,-27.8871,0,-19.5066,-25.0144 dDocent_Contig_15794 8 . G A 2265.16 . AB=0.639344;ABP=23.5859;AC=4;AF=0.5;AN=8;AO=78;CIGAR=1X;DP=122;DPB=122;DPRA=0;EPP=172.385;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.974359;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2992;QR=1681;RO=44;RPL=0;RPP=172.385;RPPR=98.5551;RPR=78;RUN=1;SAF=78;SAP=172.385;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:16,12:16:615:12:466:-33.8632,0,-47.26 0/1:50:17,33:17:654:33:1263:-98.9095,0,-44.1445 0/1:28:9,19:9:336:19:726:-57.2412,0,-22.1631 0/1:16:2,14:2:76:14:537:-43.8584,0,-2.39819 dDocent_Contig_15795 12 . G A 149.083 . AB=0.210526;ABP=30.668;AC=2;AF=0.25;AN=8;AO=9;CIGAR=1X3M1X;DP=55;DPB=55;DPRA=18;EPP=22.5536;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=58.8889;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.777778;PAIREDR=0.76087;PAO=0;PQA=0;PQR=0;PRO=0;QA=362;QR=1787;RO=46;RPL=0;RPP=22.5536;RPPR=102.898;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:16:15,1:15:593:1:40:0,-0.829999,-49.7204 0|1:11:9,2:9:341:2:81:-4.3744,0,-27.731 0|1:27:21,6:21:821:6:241:-13.9306,0,-66.076 0|0:1:1,0:1:32:0:0:0,-0.30103,-3.19931 dDocent_Contig_15796 9 . T C 69.8089 . AB=0.285714;ABP=8.59409;AC=2;AF=0.25;AN=8;AO=5;CIGAR=1X;DP=37;DPB=37;DPRA=0.9;EPP=13.8677;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=164;QR=1186;RO=32;RPL=0;RPP=13.8677;RPPR=72.4974;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:13:12,1:12:449:1:10:0,-2.91339,-39.7533 0/0:10:10,0:10:367:0:0:0,-3.0103,-33.3738 0/1:7:6,1:6:224:1:39:-1.78935,0,-18.4126 0/1:7:4,3:4:146:3:115:-8.61768,0,-11.3901 dDocent_Contig_15798 41 . G C 823.894 . AB=0.510204;ABP=3.05462;AC=5;AF=0.625;AN=8;AO=28;CIGAR=1X;DP=93;DPB=93;DPRA=0.422764;EPP=63.8115;EPPR=141.985;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1081;QR=2506;RO=64;RPL=0;RPP=63.8115;RPPR=141.985;RPR=28;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=64;SRP=141.985;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:49:23,25:23:912:25:966:-72.6859,0,-67.839 0/0:41:41,0:41:1594:0:0:0,-12.3422,-143.714 1/1:1:0,1:0:0:1:37:-3.69783,-0.30103,0 1/1:2:0,2:0:0:2:78:-7.40278,-0.60206,0 dDocent_Contig_15799 34 . C A 290.891 . AB=0.27451;ABP=25.534;AC=3;AF=0.375;AN=8;AO=14;CIGAR=1X;DP=61;DPB=61;DPRA=1.7;EPP=33.4109;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.978723;PAO=0;PQA=0;PQR=0;PRO=0;QA=541;QR=1824;RO=47;RPL=0;RPP=33.4109;RPPR=105.07;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:5:4,1:4:156:1:40:-2.49053,0,-12.9117 0/1:20:13,7:13:506:7:280:-19.5512,0,-39.8667 0/1:26:20,6:20:780:6:221:-12.4116,0,-62.6942 0/0:10:10,0:10:382:0:0:0,-3.0103,-34.7333 dDocent_Contig_15800 81 . C T 85.3671 . AB=0.4;ABP=3.87889;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=38;DPB=38;DPRA=1.07143;EPP=11.6962;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=140;QR=1151;RO=34;RPL=4;RPP=11.6962;RPPR=76.8404;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:6,4:6:208:4:140:-9.93463,0,-16.0493 0/0:8:8,0:8:267:0:0:0,-2.40824,-24.3554 0/0:6:6,0:6:202:0:0:0,-1.80618,-18.5105 0/0:14:14,0:14:474:0:0:0,-4.21442,-42.9841 dDocent_Contig_15801 8 . G A 1523.9 . AB=0.349398;ABP=19.3617;AC=5;AF=0.625;AN=8;AO=55;CIGAR=1X3M4D3M1X;DP=109;DPB=90.6667;DPRA=0;EPP=122.441;EPPR=120.27;GTI=0;LEN=1;MEANALT=1;MQM=52.6727;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.745455;PAIREDR=0.777778;PAO=0;PQA=0;PQR=0;PRO=0;QA=2129;QR=2101;RO=54;RPL=0;RPP=122.441;RPPR=120.27;RPR=55;RUN=1;SAF=55;SAP=122.441;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:25:14,11:14:548:11:429:-30.6572,0,-42.1397 0|1:23:19,4:19:740:4:158:-5.36865,0,-60.0028 0|1:35:21,14:21:813:14:549:-34.2032,0,-62.9545 1|1:26:0,26:0:0:26:993:-87.5585,-7.82678,0 dDocent_Contig_15802 42 . G T 443.512 . AB=0.256098;ABP=45.3805;AC=4;AF=0.5;AN=8;AO=21;CIGAR=1X;DP=82;DPB=82;DPRA=0;EPP=48.6112;EPPR=135.47;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.047619;PAIREDR=0.786885;PAO=0;PQA=0;PQR=0;PRO=0;QA=831;QR=2362;RO=61;RPL=0;RPP=48.6112;RPPR=135.47;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=61;SRP=135.47;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:27,3:27:1003:3:118:-1.9713,0,-81.5205 0/1:23:20,3:20:790:3:122:-4.4488,0,-64.4893 0/1:25:11,14:11:446:14:551:-42.4032,0,-32.9699 0/1:4:3,1:3:123:1:40:-2.79156,0,-10.2607 dDocent_Contig_15804 9 . T A 58.2397 . AB=0.5;ABP=3.0103;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X1M1X;DP=72;DPB=72;DPRA=0.272727;EPP=9.52472;EPPR=152.842;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=100;QR=2601;RO=69;RPL=0;RPP=9.52472;RPPR=152.842;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=69;SRP=152.842;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:17:17,0:17:637:0:0:0,-5.11751,-57.6639 0|0:32:32,0:32:1221:0:0:0,-9.63296,-110.185 0|1:6:3,3:3:114:3:100:-7.52294,0,-8.82604 0|0:17:17,0:17:629:0:0:0,-5.11751,-56.9391 dDocent_Contig_15805 24 . C A 70.5724 . AB=0.333333;ABP=5.18177;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=25;DPB=25;DPRA=1.6875;EPP=9.52472;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=0.590909;PAO=0;PQA=0;PQR=0;PRO=0;QA=123;QR=890;RO=22;RPL=0;RPP=9.52472;RPPR=50.7827;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:12:12,0:12:485:0:0:0,-3.61236,-44.0012 0/0:3:3,0:3:121:0:0:0,-0.90309,-11.2802 0/0:1:1,0:1:41:0:0:0,-0.30103,-4.09457 0/1:9:6,3:6:243:3:123:-8.75552,0,-19.5389 dDocent_Contig_15808 16 . T C 2150.66 . AB=0.673077;ABP=30.0702;AC=4;AF=0.5;AN=8;AO=70;CIGAR=1X;DP=104;DPB=104;DPRA=0;EPP=155.013;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=59.3571;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.928571;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2806;QR=1370;RO=34;RPL=0;RPP=155.013;RPPR=76.8404;RPR=70;RUN=1;SAF=70;SAP=155.013;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:6,11:6:241:11:444:-35.1574,0,-16.9477 0/1:19:6,13:6:243:13:524:-41.7695,0,-16.528 0/1:44:13,31:13:520:31:1232:-97.8827,0,-33.9016 0/1:24:9,15:9:366:15:606:-47.6539,0,-26.0799 dDocent_Contig_15809 38 . G T 685.08 . AB=0.462963;ABP=3.6537;AC=4;AF=0.5;AN=8;AO=25;CIGAR=2X;DP=54;DPB=54;DPRA=0;EPP=57.2971;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.928571;PAO=0;PQA=0;PQR=0;PRO=0;QA=997;QR=1048;RO=28;RPL=0;RPP=57.2971;RPPR=63.8115;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:19:5,14:5:191:14:556:-44.6618,0,-11.8387 0|1:10:4,6:4:150:6:240:-18.9655,0,-10.8523 0|1:10:8,1:8:310:1:41:-0.982229,0,-25.1573 0|1:15:11,4:11:397:4:160:-10.2684,0,-31.5455 dDocent_Contig_15810 15 . T C 1675.65 . AB=0.44697;ABP=6.23461;AC=4;AF=0.5;AN=8;AO=59;CIGAR=4M1X8M;DP=132;DPB=131.308;DPRA=0;EPP=131.127;EPPR=135.47;GTI=0;LEN=1;MEANALT=2.25;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2343;QR=2396;RO=61;RPL=0;RPP=131.127;RPPR=135.47;RPR=59;RUN=1;SAF=59;SAP=131.127;SAR=0;SRF=61;SRP=135.47;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:71:28,4,37:28:1085:4,37:149,1463:-111.969,-108.205,-196.127,0,-76.9559,-78.0111 0|1:46:24,5,17:24:955:5,17:194,677:-48.5284,-39.8162,-116.947,0,-62.7066,-73.5266 0|1:10:5,0,4:5:197:0,4:0,162:-11.849,-13.3542,-29.5559,0,-16.1944,-14.9903 0|1:5:4,0,1:4:159:0,1:0,41:-2.58942,-3.79354,-16.8748,0,-13.4882,-13.1872 dDocent_Contig_15812 8 . G A 114.827 . AB=0.222222;ABP=21.1059;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X3M1X;DP=89;DPB=89;DPRA=2.06897;EPP=20.3821;EPPR=178.9;GTI=0;LEN=1;MEANALT=1;MQM=56;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=313;QR=3150;RO=81;RPL=0;RPP=20.3821;RPPR=178.9;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=81;SRP=178.9;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:19:19,0:19:740:0:0:0,-5.71957,-66.9288 0|1:27:21,6:21:827:6:233:-13.1816,0,-66.6231 0|0:33:31,2:31:1195:2:80:0,-2.35446,-100.265 0|0:10:10,0:10:388:0:0:0,-3.0103,-35.2773 dDocent_Contig_15813 77 . G A 255.835 . AB=0.297872;ABP=19.6891;AC=3;AF=0.375;AN=8;AO=14;CIGAR=1X;DP=76;DPB=76;DPRA=0.54023;EPP=33.4109;EPPR=137.642;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=490;QR=2132;RO=62;RPL=14;RPP=33.4109;RPPR=137.642;RPR=0;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:7,4:7:247:4:140:-9.63325,0,-19.262 0/0:29:29,0:29:990:0:0:0,-8.72987,-89.4085 0/1:21:14,7:14:477:7:246:-16.1606,0,-36.9338 0/1:15:12,3:12:418:3:104:-5.18757,0,-33.4384 dDocent_Contig_15814 43 . A G 94.1052 . AB=0.157895;ABP=41.6397;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=111;DPB=111;DPRA=1.56164;EPP=16.0391;EPPR=231.015;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=243;QR=4188;RO=105;RPL=0;RPP=16.0391;RPPR=231.015;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=105;SRP=231.015;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:38:32,6:32:1262:6:243:-10.8085,0,-102.405 0/0:41:41,0:41:1644:0:0:0,-12.3422,-148.186 0/0:17:17,0:17:680:0:0:0,-5.11751,-61.5268 0/0:15:15,0:15:602:0:0:0,-4.51545,-54.5187 dDocent_Contig_15815 37 . T C 290.895 . AB=0.342857;ABP=10.5174;AC=3;AF=0.375;AN=8;AO=12;CIGAR=1X;DP=51;DPB=51;DPRA=0.729167;EPP=29.068;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=487;QR=1574;RO=39;RPL=0;RPP=29.068;RPPR=87.6977;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:16:16,0:16:645:0:0:0,-4.81648,-58.3831 0/1:18:14,4:14:561:4:163:-9.63989,0,-45.413 0/1:12:5,7:5:205:7:283:-22.231,0,-15.2226 0/1:5:4,1:4:163:1:41:-2.58942,0,-13.5533 dDocent_Contig_15816 22 . C T 647.676 . AB=0.479167;ABP=3.19126;AC=3;AF=0.375;AN=8;AO=24;CIGAR=1X;DP=69;DPB=69;DPRA=0;EPP=55.1256;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.8444;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=0;PAIREDR=0.666667;PAO=0;PQA=0;PQR=0;PRO=0;QA=968;QR=1808;RO=45;RPL=0;RPP=55.1256;RPPR=100.727;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:7,5:7:274:5:200:-14.7672,0,-21.4125 0/1:13:11,2:11:448:2:77:-3.39481,0,-36.762 0/1:23:7,16:7:276:16:651:-51.9992,0,-18.2649 0/0:21:20,1:20:810:1:40:0,-2.32595,-69.2199 dDocent_Contig_15818 42 . G T 69.8827 . AB=0.375;ABP=4.09604;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=29;DPB=29;DPRA=1.14286;EPP=9.52472;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.846154;PAO=0;PQA=0;PQR=0;PRO=0;QA=119;QR=1024;RO=26;RPL=0;RPP=9.52472;RPPR=59.4686;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:6:6,0:6:231:0:0:0,-1.80618,-21.1563 0/1:8:5,3:5:200:3:119:-8.68715,0,-15.9713 0/0:4:4,0:4:157:0:0:0,-1.20412,-14.5083 0/0:11:11,0:11:436:0:0:0,-3.31133,-39.5947 dDocent_Contig_15819 73 . G A 1223.72 . AB=0.522727;ABP=3.40511;AC=4;AF=0.5;AN=8;AO=46;CIGAR=1X;DP=88;DPB=88;DPRA=0;EPP=102.898;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=0.869565;PAIREDR=0.928571;PAO=0;PQA=0;PQR=0;PRO=0;QA=1721;QR=1562;RO=42;RPL=46;RPP=102.898;RPPR=94.2121;RPR=0;RUN=1;SAF=46;SAP=102.898;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:8,16:8:297:16:601:-47.2023,0,-19.8582 0/1:23:14,9:14:528:9:334:-23.4872,0,-40.9364 0/1:28:11,17:11:417:17:643:-49.7739,0,-29.4505 0/1:13:9,4:9:320:4:143:-9.30682,0,-25.2284 dDocent_Contig_15822 8 . G A 1229.47 . AB=0.0769231;ABP=245.547;AC=0;AF=0;AN=8;AO=13;CIGAR=1X2M4D1X1M1X17M;DP=191;DPB=180.63;DPRA=0;EPP=31.2394;EPPR=200.614;GTI=0;LEN=1;MEANALT=4.66667;MQM=60;MQMR=60;NS=4;NUMALT=6;ODDS=5.55112e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=509;QR=3571;RO=91;RPL=0;RPP=31.2394;RPPR=200.614;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=91;SRP=200.614;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:122:70,6,24,9,2,11,0:70:2739:6,24,9,2,11,0:234,943,359,63,426,0:-56.4903,-58.3281,-281.722,0,-205.968,-217.977,-47.9945,-253.961,-195.635,-270.486,-72.4992,-278.463,-220.137,-268.13,-297.095,-42.5689,-248.534,-190.208,-238.201,-262.703,-264.457,-77.5624,-283.528,-225.202,-273.195,-297.697,-267.768,-302.762 0|0:34:10,6,0,9,5,3,0:10:398:6,0,9,5,3,0:236,0,341,200,117,0:-24.9379,-8.53329,-39.5032,-27.9482,-41.3093,-60.7232,0,-13.3609,-32.7735,-30.0642,-11.4702,-24.8323,-44.2466,-16.2974,-42.7414,-18.3309,-31.6923,-51.1062,-23.1572,-34.6294,-50.2031,-27.9482,-41.3093,-60.7232,-32.7735,-44.2466,-51.1062,-60.7232 0|0:14:0,1,0,11,1,1,0:0:0:1,0,11,1,1,0:39,0,421,38,40,0:-37.8515,-34.6452,-34.3441,-37.8515,-34.6452,-37.8515,-3.31133,-0.105449,-3.31133,0,-34.7353,-31.529,-34.7353,-0.19978,-34.4343,-34.5552,-31.3488,-34.5552,-0.0112901,-31.439,-34.2542,-37.8515,-34.6452,-37.8515,-3.31133,-34.7353,-34.5552,-37.8515 0|0:21:11,0,1,3,0,2,4:11:434:0,1,3,0,2,4:0,40,115,0,73,157:-9.06299,-12.3743,-48.0921,-9.07692,-44.7964,-44.4953,-2.93409,-38.6543,-35.3585,-37.7512,-12.3743,-48.0921,-44.7964,-38.6543,-48.0921,-6.41453,-42.1311,-38.8355,-32.6939,-42.1311,-41.5291,0,-35.719,-32.4233,-26.2819,-35.719,-29.759,-34.5149 dDocent_Contig_15823 108 . G C 282.319 . AB=0.5;ABP=3.0103;AC=3;AF=0.375;AN=8;AO=14;CIGAR=1X;DP=44;DPB=44;DPRA=0.583333;EPP=33.4109;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.785714;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=439;QR=998;RO=30;RPL=0;RPP=33.4109;RPPR=68.1545;RPR=14;RUN=1;SAF=0;SAP=33.4109;SAR=14;SRF=0;SRP=68.1545;SRR=30;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:16:16,0:16:523:0:0:0,-4.81648,-47.3835 0/1:10:1,9:1:34:9:284:-22.859,0,-0.388611 0/1:9:7,2:7:239:2:59:-2.89457,0,-19.1349 0/1:9:6,3:6:202:3:96:-6.24869,0,-15.8016 dDocent_Contig_15824 21 . G A 124.665 . AB=0.333333;ABP=6.62942;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=63;DPB=63;DPRA=0.9375;EPP=13.8677;EPPR=128.956;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.965517;PAO=0;PQA=0;PQR=0;PRO=0;QA=200;QR=2287;RO=58;RPL=0;RPP=13.8677;RPPR=128.956;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:10,5:10:382:5:200:-13.8645,0,-30.2132 0/0:17:17,0:17:684:0:0:0,-5.11751,-61.8886 0/0:21:21,0:21:830:0:0:0,-6.32163,-75.013 0/0:10:10,0:10:391:0:0:0,-3.0103,-35.5429 dDocent_Contig_15826 122 . T A 354.4 . AB=0.26;ABP=53.041;AC=4;AF=0.5;AN=8;AO=26;CIGAR=1X;DP=100;DPB=100;DPRA=0;EPP=59.4686;EPPR=163.699;GTI=0;LEN=1;MEANALT=1;MQM=35.1154;MQMR=51.5135;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.243243;PAO=0;PQA=0;PQR=0;PRO=0;QA=932;QR=2668;RO=74;RPL=0;RPP=59.4686;RPPR=163.699;RPR=26;RUN=1;SAF=0;SAP=59.4686;SAR=26;SRF=0;SRP=163.699;SRR=74;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:22,9:22:801:9:320:-15.9444,0,-51.6261 0/1:25:15,10:15:553:10:357:-18.2391,0,-33.856 0/1:19:15,4:15:549:4:145:-6.64834,0,-43.9299 0/1:25:22,3:22:765:3:110:-0.749079,0,-61.6002 dDocent_Contig_15827 16 . A T 969.79 . AB=0.75;ABP=24.725;AC=4;AF=0.5;AN=8;AO=31;CIGAR=1X;DP=67;DPB=67;DPRA=0.525641;EPP=70.3259;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1237;QR=1450;RO=36;RPL=0;RPP=70.3259;RPPR=81.1833;RPR=31;RUN=1;SAF=31;SAP=70.3259;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:37:8,29:8:321:29:1156:-93.1823,0,-18.12 0/0:26:26,0:26:1047:0:0:0,-7.82678,-94.5188 0/1:3:2,1:2:82:1:41:-3.19148,0,-6.87659 1/1:1:0,1:0:0:1:40:-3.99568,-0.30103,0 dDocent_Contig_15828 13 . G C 60.1576 . AB=0.3;ABP=6.48466;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=83;DPB=83;DPRA=0.410959;EPP=9.52472;EPPR=151.648;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.5625;PAO=0;PQA=0;PQR=0;PRO=0;QA=115;QR=3004;RO=80;RPL=0;RPP=9.52472;RPPR=176.728;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=77;SRP=151.648;SRR=3;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:39:39,0:39:1474:0:0:0,-11.7402,-132.937 0/0:15:15,0:15:571:0:0:0,-4.51545,-51.7302 0/1:10:7,3:7:271:3:115:-7.71473,0,-21.7461 0/0:19:19,0:19:688:0:0:0,-5.71957,-62.2343 dDocent_Contig_15829 13 . G A 170.051 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=11;CIGAR=1X;DP=11;DPB=11;DPRA=0;EPP=26.8965;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=16;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=403;QR=0;RO=0;RPL=0;RPP=26.8965;RPPR=0;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:4:0,4:0:0:4:146:-4.80305,-1.20412,0 1/1:1:0,1:0:0:1:37:-1.29836,-0.30103,0 1/1:3:0,3:0:0:3:111:-5.65231,-0.90309,0 1/1:3:0,3:0:0:3:109:-4.64297,-0.90309,0 dDocent_Contig_15830 18 . G A 68.0114 . AB=0.375;ABP=4.09604;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=55;DPB=55;DPRA=0.510638;EPP=9.52472;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=59.3333;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.666667;PAIREDR=0.711538;PAO=0;PQA=0;PQR=0;PRO=0;QA=117;QR=2085;RO=52;RPL=0;RPP=9.52472;RPPR=115.927;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:24:24,0:24:955:0:0:0,-7.22472,-86.2526 0/0:12:12,0:12:485:0:0:0,-3.61236,-44.0007 0/1:8:5,3:5:203:3:117:-8.50011,0,-16.2448 0/0:11:11,0:11:442:0:0:0,-3.31133,-40.1356 dDocent_Contig_15832 68 . C G 674.46 . AB=0.481481;ABP=3.17115;AC=4;AF=0.5;AN=8;AO=26;CIGAR=1X;DP=54;DPB=54;DPRA=0;EPP=59.4686;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.346154;PAIREDR=0.821429;PAO=0;PQA=0;PQR=0;PRO=0;QA=996;QR=1026;RO=28;RPL=26;RPP=59.4686;RPPR=63.8115;RPR=0;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:3,6:3:111:6:227:-18.0827,0,-7.64351 0/1:26:16,10:16:576:10:387:-27.3605,0,-44.3329 0/1:9:2,7:2:78:7:265:-21.5005,0,-4.6942 0/1:10:7,3:7:261:3:117:-7.90008,0,-20.8358 dDocent_Contig_15833 18 . A G 89.3894 . AB=0.142857;ABP=57.2971;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=116;DPB=116;DPRA=2.19403;EPP=18.2106;EPPR=239.701;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=278;QR=4375;RO=109;RPL=0;RPP=18.2106;RPPR=239.701;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=109;SRP=239.701;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:32:32,0:32:1282:0:0:0,-9.63296,-115.647 0/1:49:42,7:42:1685:7:278:-10.6379,0,-137.116 0/0:24:24,0:24:962:0:0:0,-7.22472,-86.8817 0/0:11:11,0:11:446:0:0:0,-3.31133,-40.496 dDocent_Contig_15834 7 . A T 129.204 . AB=0.291667;ABP=12.0581;AC=3;AF=0.375;AN=8;AO=7;CIGAR=1X;DP=35;DPB=35;DPRA=0.727273;EPP=18.2106;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.928571;PAO=0;PQA=0;PQR=0;PRO=0;QA=271;QR=1064;RO=28;RPL=0;RPP=18.2106;RPPR=63.8115;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:7,4:7:267:4:155:-11.0141,0,-21.0818 0/1:11:9,2:9:334:2:77:-3.99781,0,-27.0987 0/1:2:1,1:1:39:1:39:-3.2945,0,-3.2945 0/0:11:11,0:11:424:0:0:0,-3.31133,-38.514 dDocent_Contig_15835 10 . G A 1630.83 . AB=0.461538;ABP=4.68066;AC=4;AF=0.5;AN=8;AO=60;CIGAR=1X4M;DP=130;DPB=130;DPRA=0;EPP=133.299;EPPR=131.127;GTI=0;LEN=1;MEANALT=2.25;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2290;QR=2199;RO=59;RPL=0;RPP=133.299;RPPR=131.127;RPR=60;RUN=1;SAF=60;SAP=133.299;SAR=0;SRF=59;SRP=131.127;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:34:27,1,6:27:1005:1,6:38,225:-10.2973,-15.3079,-97.2678,0,-79.139,-80.4496 0|1:59:20,5,33:20:743:5,33:199,1247:-96.1605,-85.7924,-145.091,0,-44.3935,-50.8505 0|1:32:9,3,19:9:336:3,19:113,742:-58.3138,-51.7654,-78.369,0,-18.2588,-21.8004 0|1:5:3,0,2:3:115:0,2:0,76:-5.70966,-6.61275,-16.0536,0,-9.82194,-9.21988 dDocent_Contig_15836 67 . T A 500.423 . AB=0.264368;ABP=44.9671;AC=3;AF=0.375;AN=8;AO=24;CIGAR=1X;DP=106;DPB=106;DPRA=0;EPP=55.1256;EPPR=181.071;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.926829;PAO=0;PQA=0;PQR=0;PRO=0;QA=936;QR=3179;RO=82;RPL=24;RPP=55.1256;RPPR=181.071;RPR=0;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=82;SRP=181.071;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:19,4:19:739:4:149:-6.84833,0,-59.9069 0/1:40:33,7:33:1279:7:274:-12.9869,0,-103.347 0/0:19:18,1:18:713:1:41:0,-1.625,-60.4042 0/1:24:12,12:12:448:12:472:-35.6049,0,-33.4352 dDocent_Contig_15838 26 . T A 136.553 . AB=0.333333;ABP=7.35324;AC=2;AF=0.25;AN=8;AO=6;CIGAR=1X;DP=31;DPB=31;DPRA=1.38462;EPP=16.0391;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=241;QR=1012;RO=25;RPL=0;RPP=16.0391;RPPR=57.2971;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:10:10,0:10:406:0:0:0,-3.0103,-36.9 0/1:4:2,2:2:82:2:82:-6.57556,0,-6.57556 0/1:14:10,4:10:408:4:159:-10.4775,0,-32.8662 0/0:3:3,0:3:116:0:0:0,-0.90309,-10.8155 dDocent_Contig_15840 188 . C T 107.299 . AB=0.294118;ABP=9.26925;AC=2;AF=0.25;AN=8;AO=5;CIGAR=1X;DP=28;DPB=28;DPRA=1.54545;EPP=13.8677;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=205;QR=906;RO=23;RPL=5;RPP=13.8677;RPPR=52.9542;RPR=0;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=52.9542;SRR=23;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:9,2:9:356:2:82:-4.46835,0,-29.0887 0/0:10:10,0:10:392:0:0:0,-3.0103,-35.6365 0/1:6:3,3:3:117:3:123:-9.65861,0,-9.1024 0/0:1:1,0:1:41:0:0:0,-0.30103,-4.09457 dDocent_Contig_15842 109 . G T 96.1608 . AB=0.666667;ABP=4.45795;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=30;DPB=30;DPRA=0.5;EPP=11.6962;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=140;QR=868;RO=26;RPL=0;RPP=11.6962;RPPR=59.4686;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=59.4686;SRR=26;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:6:2,4:2:70:4:140:-11.1387,0,-4.84122 0/0:10:10,0:10:343:0:0:0,-3.0103,-31.202 ./.:.:.:.:.:.:.:. 0/0:14:14,0:14:455:0:0:0,-4.21442,-41.2616 dDocent_Contig_15843 37 . G A 42.7811 . AB=0.166667;ABP=20.3821;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=46;DPB=46;DPRA=1.92857;EPP=9.52472;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=119;QR=1692;RO=43;RPL=0;RPP=9.52472;RPPR=96.3836;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:15,3:15:600:3:119:-5.67596,0,-48.9186 0/0:14:14,0:14:534:0:0:0,-4.21442,-48.388 0/0:4:4,0:4:150:0:0:0,-1.20412,-13.862 0/0:10:10,0:10:408:0:0:0,-3.0103,-37.0806 dDocent_Contig_15844 24 . G A 70.482 . AB=0.333333;ABP=5.18177;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=25;DPB=25;DPRA=1.125;EPP=9.52472;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=121;QR=853;RO=22;RPL=0;RPP=9.52472;RPPR=50.7827;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:6,3:6:240:3:121:-8.57072,0,-19.2658 0/0:14:14,0:14:535:0:0:0,-4.21442,-48.4841 0/0:2:2,0:2:78:0:0:0,-0.60206,-7.40278 ./.:.:.:.:.:.:.:. dDocent_Contig_15846 7 . A T 242.673 . AB=0.324324;ABP=12.9286;AC=4;AF=0.5;AN=8;AO=12;CIGAR=1X;DP=37;DPB=37;DPRA=0;EPP=29.068;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=458;QR=945;RO=25;RPL=0;RPP=29.068;RPPR=57.2971;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:6:4,2:4:151:2:78:-5.59729,0,-12.1512 0/1:17:14,3:14:540:3:114:-5.51447,0,-43.8284 0/1:6:1,5:1:39:5:188:-15.4779,0,-2.09038 0/1:8:6,2:6:215:2:78:-4.99523,0,-17.2861 dDocent_Contig_15847 21 . C G 89.3548 . AB=0.25;ABP=11.6962;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=96;DPB=96;DPRA=0.6;EPP=11.6962;EPPR=202.786;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=164;QR=3633;RO=92;RPL=0;RPP=11.6962;RPPR=202.786;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=92;SRP=202.786;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:12,4:12:481:4:164:-10.3334,0,-38.8223 0/0:26:26,0:26:1024:0:0:0,-7.82678,-92.4534 0/0:32:32,0:32:1255:0:0:0,-9.63296,-113.215 0/0:22:22,0:22:873:0:0:0,-6.62266,-78.873 dDocent_Contig_15848 8 . G T 554.148 . AB=0.377049;ABP=11.0198;AC=4;AF=0.5;AN=8;AO=23;CIGAR=1X;DP=61;DPB=61;DPRA=0;EPP=52.9542;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=886;QR=1402;RO=37;RPL=0;RPP=52.9542;RPPR=83.3548;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:5,8:5:189:8:307:-24.0778,0,-13.4612 0/1:17:13,4:13:488:4:152:-8.93169,0,-39.1445 0/1:26:18,8:18:686:8:311:-20.5275,0,-54.2447 0/1:5:1,3:1:39:3:116:-9.22476,0,-2.30279 dDocent_Contig_15849 44 . G A 84.4348 . AB=0.4;ABP=3.87889;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=62;DPB=62;DPRA=0.576923;EPP=11.6962;EPPR=128.956;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=139;QR=2296;RO=58;RPL=0;RPP=11.6962;RPPR=128.956;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:6,4:6:234:4:139:-9.84141,0,-18.42 0/0:7:7,0:7:282:0:0:0,-2.10721,-25.7526 0/0:25:25,0:25:990:0:0:0,-7.52575,-89.3946 0/0:20:20,0:20:790:0:0:0,-6.0206,-71.4194 dDocent_Contig_15851 8 . G A 172.168 . AB=0;ABP=0;AC=2;AF=0.25;AN=8;AO=5;CIGAR=1X;DP=48;DPB=48;DPRA=0.348837;EPP=13.8677;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=184;QR=1629;RO=43;RPL=0;RPP=13.8677;RPPR=96.3836;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:21:21,0:21:804:0:0:0,-6.32163,-72.6858 0/0:12:12,0:12:458:0:0:0,-3.61236,-41.569 0/0:10:10,0:10:367:0:0:0,-3.0103,-33.375 1/1:5:0,5:0:0:5:184:-16.9157,-1.50515,0 dDocent_Contig_15852 81 . T C 2756.6 . AB=0.466667;ABP=3.44459;AC=6;AF=0.75;AN=8;AO=95;CIGAR=1X;DP=119;DPB=119;DPRA=0;EPP=209.3;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.936842;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3237;QR=827;RO=24;RPL=95;RPP=209.3;RPPR=55.1256;RPR=0;RUN=1;SAF=95;SAP=209.3;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:67:0,67:0:0:67:2263:-203.934,-20.169,0 0/1:19:8,11:8:276:11:384:-29.1761,0,-19.4562 0/1:26:16,10:16:551:10:345:-23.5568,0,-42.0897 1/1:7:0,7:0:0:7:245:-22.3912,-2.10721,0 dDocent_Contig_15853 10 . C T 367.108 . AB=0.433333;ABP=4.16842;AC=5;AF=0.625;AN=8;AO=15;CIGAR=1X;DP=32;DPB=32;DPRA=0;EPP=35.5824;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=552;QR=696;RO=17;RPL=0;RPP=35.5824;RPPR=39.9253;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:74:-7.02577,-0.60206,0 0/1:4:1,3:1:41:3:116:-9.61342,0,-2.89045 0/1:9:7,2:7:286:2:72:-4.1271,0,-23.4055 0/1:17:9,8:9:369:8:290:-21.3277,0,-28.4579 dDocent_Contig_15854 29 . T A 456.427 . AB=0.157303;ABP=93.7974;AC=1;AF=0.125;AN=8;AO=14;CIGAR=1M2X1M1D1M;DP=89;DPB=117.667;DPRA=0;EPP=33.4109;EPPR=96.3836;GTI=0;LEN=1;MEANALT=2.5;MQM=19.1429;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=563;QR=1646;RO=43;RPL=0;RPP=33.4109;RPPR=96.3836;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:35:14,18,1:14:536:18,1:481,41:-28.8402,0,-38.737,-31.65,-42.7588,-75.3975 0|0:26:19,6,1:19:730:6,1:168,41:-6.02215,0,-58.3009,-10.3438,-58.7103,-70.0672 0|1:18:6,2,10:6:230:2,10:56,402:-12.3728,-10.2726,-28.6177,0,-15.1117,-15.9648 0|0:10:4,4,2:4:150:4,2:103,79:-5.80544,0,-11.2038,-4.21113,-9.65854,-15.9672 dDocent_Contig_15856 38 . A C 64.2448 . AB=0.166667;ABP=14.5915;AC=2;AF=0.5;AN=4;AO=2;CIGAR=1X1M2X;DP=27;DPB=27;DPRA=0;EPP=7.35324;EPPR=46.4397;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=2;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=79;QR=786;RO=20;RPL=0;RPP=7.35324;RPPR=46.4397;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:15:12,3,0:12:476:3,0:113,0:-6.02147,0,-38.6762,-9.63383,-39.5793,-48.8328 0|1:12:8,1,2:8:310:1,2:35,79:-4.1002,-3.67312,-28.8299,0,-22.6291,-24.8708 .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. dDocent_Contig_15857 34 . A G 878.061 . AB=0.471429;ABP=3.50664;AC=4;AF=0.5;AN=8;AO=33;CIGAR=1X;DP=70;DPB=70;DPRA=0;EPP=74.6689;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.515152;PAIREDR=0.540541;PAO=0;PQA=0;PQR=0;PRO=0;QA=1276;QR=1478;RO=37;RPL=0;RPP=74.6689;RPPR=83.3548;RPR=33;RUN=1;SAF=33;SAP=74.6689;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:17,5:17:676:5:203:-12.0302,0,-54.5485 0/1:22:5,17:5:202:17:645:-51.7431,0,-11.9394 0/1:14:9,5:9:359:5:193:-13.5231,0,-28.4584 0/1:12:6,6:6:241:6:235:-17.9077,0,-18.4543 dDocent_Contig_15859 7 . A G 111.096 . AB=0.428571;ABP=3.63072;AC=1;AF=0.25;AN=4;AO=6;CIGAR=1X;DP=24;DPB=24;DPRA=1.4;EPP=16.0391;EPPR=39.9253;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=184;QR=648;RO=17;RPL=0;RPP=16.0391;RPPR=39.9253;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:7,6:7:266:6:184:-12.8086,0,-20.2446 ./.:.:.:.:.:.:.:. 0/0:10:10,0:10:382:0:0:0,-3.0103,-34.735 ./.:.:.:.:.:.:.:. dDocent_Contig_15860 1 . N G 97.967 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=105;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:105:-9.79616,-0.90309,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_15861 6 . C A 190.838 . AB=0.409091;ABP=4.58955;AC=3;AF=0.375;AN=8;AO=9;CIGAR=1X1M2X;DP=23;DPB=23;DPRA=7.33333;EPP=22.5536;EPPR=33.4109;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=333;QR=531;RO=14;RPL=0;RPP=22.5536;RPPR=33.4109;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=14;SRP=33.4109;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:10:7,3:7:266:3:111:-7.34362,0,-21.2915 0|1:7:5,2:5:190:2:74:-4.91867,0,-15.3602 0|0:1:1,0:1:36:0:0:0,-0.30103,-3.59827 0|1:5:1,4:1:39:4:148:-12.1768,0,-2.39141 dDocent_Contig_15862 21 . A G 1173.32 . AB=0.552239;ABP=4.59839;AC=3;AF=0.375;AN=8;AO=37;CIGAR=2M1X4M2X3M1I2M1X2M2X1M;DP=70;DPB=71.4;DPRA=7.44444;EPP=83.3548;EPPR=46.4397;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=4;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1439;QR=781;RO=20;RPL=0;RPP=83.3548;RPPR=46.4397;RPR=37;RUN=1;SAF=37;SAP=83.3548;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:33:11,0,22,0,0:11:431:0,22,0,0:0,868,0,0:-68.5027,-71.8141,-107.255,0,-35.8337,-29.2111,-71.8141,-107.255,-35.8337,-107.255,-71.8141,-107.255,-35.8337,-107.255,-107.255 0|1:29:7,1,12,6,2:7:277:1,12,6,2:12,455,226,75:-35.2129,-36.8126,-59.3136,0,-22.3134,-19.2043,-18.7987,-41.0991,-4.29513,-39.8008,-31.1763,-53.4725,-16.673,-35.4639,-53.3802 0|1:5:2,0,3,0,0:2:73:0,3,0,0:0,116,0,0:-9.31184,-9.9139,-15.8691,0,-6.32864,-5.42555,-9.9139,-15.8691,-6.32864,-15.8691,-9.9139,-15.8691,-6.32864,-15.8691,-15.8691 0|0:3:0,3,0,0,0:0:0:3,0,0,0:104,0,0,0:-9.70153,-0.90309,0,-9.70153,-0.90309,-9.70153,-9.70153,-0.90309,-9.70153,-9.70153,-9.70153,-0.90309,-9.70153,-9.70153,-9.70153 dDocent_Contig_15868 158 . T G 145.582 . AB=0.315789;ABP=8.61041;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=31;DPB=31;DPRA=4.75;EPP=16.0391;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=240;QR=961;RO=25;RPL=6;RPP=16.0391;RPPR=57.2971;RPR=0;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=57.2971;SRR=25;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:8:8,0:8:314:0:0:0,-2.40824,-28.6253 0/0:3:3,0:3:115:0:0:0,-0.90309,-10.7247 0/1:19:13,6:13:493:6:240:-16.2565,0,-38.9951 0/0:1:1,0:1:39:0:0:0,-0.30103,-3.89656 dDocent_Contig_15869 69 . T G 91.4885 . AB=0.25;ABP=7.35324;AC=3;AF=0.375;AN=8;AO=4;CIGAR=1M3D3M1X1M1X;DP=22;DPB=20.8;DPRA=0.833333;EPP=5.18177;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=137;QR=527;RO=17;RPL=4;RPP=11.6962;RPPR=39.9253;RPR=0;RUN=1;SAF=3;SAP=5.18177;SAR=1;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:2:0,2:0:0:2:67:-6.36314,-0.60206,0 0|0:9:9,0:9:281:0:0:0,-2.70927,-25.5966 0|1:8:5,2:5:158:2:70:-4.18252,0,-12.0729 0|0:3:3,0:3:88:0:0:0,-0.90309,-8.21146 dDocent_Contig_15870 7 . A G 199.83 . AB=0.181818;ABP=22.3561;AC=1;AF=0.125;AN=8;AO=4;CIGAR=2X1M1X;DP=58;DPB=58;DPRA=0;EPP=11.6962;EPPR=94.2121;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=127;QR=1577;RO=42;RPL=0;RPP=11.6962;RPPR=94.2121;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:6:3,0,3:3:116:0,3:0,116:-9.01152,-9.91461,-19.4429,0,-9.91461,-9.01152 0|1:11:7,3,0:7:262:3,0:94,0:-5.53688,0,-20.7148,-7.64409,-21.6179,-29.1589 0|0:30:24,0,5:24:905:0,5:0,195:-8.78817,-16.0129,-90.1667,0,-74.1354,-72.6302 0|0:11:8,1,2:8:294:1,2:33,78:-4.04334,-3.80331,-27.5167,0,-21.4015,-23.4635 dDocent_Contig_15873 96 . G T 431.913 . AB=0.487179;ABP=3.06598;AC=3;AF=0.375;AN=8;AO=21;CIGAR=1X;DP=72;DPB=72;DPRA=0;EPP=48.6112;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=726;QR=1749;RO=51;RPL=21;RPP=48.6112;RPPR=113.755;RPR=0;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:33:31,2:31:1062:2:69:0,-3.38133,-89.3356 0/1:28:14,14:14:484:14:483:-35.3703,0,-35.4608 0/1:8:5,3:5:175:3:105:-7.38792,0,-13.6855 0/1:3:1,2:1:28:2:69:-5.64957,0,-1.89664 dDocent_Contig_15874 64 . T G 172.314 . AB=0.25;ABP=24.725;AC=3;AF=0.375;AN=8;AO=10;CIGAR=1X;DP=56;DPB=56;DPRA=0.833333;EPP=24.725;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.9;PAIREDR=0.934783;PAO=0;PQA=0;PQR=0;PRO=0;QA=360;QR=1753;RO=46;RPL=10;RPP=24.725;RPPR=102.898;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:16:16,0:16:607:0:0:0,-4.81648,-54.9689 0/1:17:10,7:10:387:7:252:-17.9085,0,-30.07 0/1:19:17,2:17:644:2:69:-0.831754,0,-52.5731 0/1:4:3,1:3:115:1:39:-2.69244,0,-9.52077 dDocent_Contig_15876 24 . C T 254.869 . AB=0.220339;ABP=43.0905;AC=3;AF=0.375;AN=8;AO=13;CIGAR=1X;DP=71;DPB=71;DPRA=1.63889;EPP=31.2394;EPPR=128.956;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.758621;PAO=0;PQA=0;PQR=0;PRO=0;QA=518;QR=2343;RO=58;RPL=0;RPP=31.2394;RPPR=128.956;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:33:29,4:29:1162:4:164:-5.21591,0,-94.9252 0/1:8:7,1:7:283:1:35:-1.09039,0,-23.4348 0/1:18:10,8:10:408:8:319:-23.6557,0,-31.662 0/0:12:12,0:12:490:0:0:0,-3.61236,-44.4511 dDocent_Contig_15877 14 . T C 306.769 . AB=0.25;ABP=9.52472;AC=5;AF=0.625;AN=8;AO=10;CIGAR=1X;DP=32;DPB=32;DPRA=0.487179;EPP=24.725;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=384;QR=876;RO=22;RPL=0;RPP=24.725;RPPR=50.7827;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:13:13,0:13:517:0:0:0,-3.91339,-46.8766 0/1:12:9,3:9:359:3:115:-7.11253,0,-29.059 1/1:5:0,5:0:0:5:191:-17.5585,-1.50515,0 1/1:2:0,2:0:0:2:78:-7.40347,-0.60206,0 dDocent_Contig_15878 193 . G A 32.4684 . AB=0.222222;ABP=9.04217;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=23;DPB=23;DPRA=1.28571;EPP=7.35324;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=836;RO=21;RPL=2;RPP=7.35324;RPPR=48.6112;RPR=0;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=48.6112;SRR=21;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:4:4,0:4:164:0:0:0,-1.20412,-15.1499 0/1:9:7,2:7:262:2:82:-5.07041,0,-21.2182 0/0:10:10,0:10:410:0:0:0,-3.0103,-37.2606 ./.:.:.:.:.:.:.:. dDocent_Contig_15879 8 . G T 290.427 . AB=0.043956;ABP=167.398;AC=0;AF=0;AN=8;AO=12;CIGAR=2X;DP=218;DPB=218;DPRA=3.3;EPP=29.068;EPPR=380.846;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.916667;PAIREDR=0.988506;PAO=0;PQA=0;PQR=0;PRO=0;QA=457;QR=6644;RO=174;RPL=0;RPP=29.068;RPPR=380.846;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=174;SRP=380.846;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:107:86,8,8:86:3302:8,8:302,298:0,-1.13664,-269.788,-1.50006,-247.805,-270.149 0|0:74:59,2,13:59:2248:2,13:77,497:-23.0187,-34.4567,-218.255,0,-178.075,-180.484 0|0:17:11,2,4:11:406:2,4:78,155:-9.42116,-6.31991,-38.9073,0,-26.7703,-31.9812 0|0:20:18,0,2:18:688:0,2:0,79:0,-5.41854,-61.941,-0.235311,-57.07,-56.468 dDocent_Contig_15880 62 . G A 179.539 . AB=0.236842;ABP=25.8679;AC=2;AF=0.25;AN=8;AO=11;CIGAR=1X;DP=94;DPB=94;DPRA=31;EPP=26.8965;EPPR=183.243;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=420;QR=3235;RO=83;RPL=11;RPP=26.8965;RPPR=183.243;RPR=0;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=83;SRP=183.243;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:55:53,2:53:2076:2:64:0,-10.4785,-180.959 0/1:29:23,6:23:886:6:241:-13.3364,0,-71.3219 0/1:9:6,3:6:236:3:115:-8.01483,0,-18.9019 0/0:1:1,0:1:37:0:0:0,-0.30103,-3.69783 dDocent_Contig_15881 36 . C T 95.3275 . AB=0.181818;ABP=12.6832;AC=3;AF=0.375;AN=8;AO=4;CIGAR=1X;DP=21;DPB=21;DPRA=1.625;EPP=11.6962;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=150;QR=684;RO=17;RPL=0;RPP=11.6962;RPPR=39.9253;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:74:-7.02543,-0.60206,0 0/0:6:6,0:6:241:0:0:0,-1.80618,-22.0663 0/1:11:9,2:9:362:2:76:-3.90334,0,-29.6317 0/0:2:2,0:2:81:0:0:0,-0.60206,-7.68573 dDocent_Contig_15882 152 . C A 47.8272 . AB=0.4;ABP=3.44459;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X;DP=24;DPB=24;DPRA=0.789474;EPP=7.35324;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.818182;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=895;RO=22;RPL=2;RPP=7.35324;RPPR=50.7827;RPR=0;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=50.7827;SRR=22;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:5:3,2:3:122:2:81:-6.18058,0,-9.86734 0/0:5:5,0:5:203:0:0:0,-1.50515,-18.6531 0/0:9:9,0:9:368:0:0:0,-2.70927,-33.4854 0/0:5:5,0:5:202:0:0:0,-1.50515,-18.5619 dDocent_Contig_15883 106 . N C 150.147 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=4;CIGAR=3X11I2M;DP=4;DPB=12.8;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=155;QR=0;RO=0;RPL=0;RPP=11.6962;RPPR=0;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. 1|1:2:0,2:0:0:2:78:-7.40347,-0.60206,0 .:.:.:.:.:.:.:. 1|1:2:0,2:0:0:2:77:-7.30914,-0.60206,0 dDocent_Contig_15884 51 . C T 568.343 . AB=0.310811;ABP=26.0162;AC=2;AF=0.25;AN=8;AO=25;CIGAR=1X;DP=173;DPB=173;DPRA=0.527363;EPP=57.2971;EPPR=324.388;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=991;QR=5817;RO=148;RPL=25;RPP=57.2971;RPPR=324.388;RPR=0;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=148;SRP=324.388;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:45:29,16:29:1180:16:636:-44.027,0,-92.9267 0/0:67:67,0:67:2646:0:0:0,-20.169,-238.26 0/1:29:22,7:22:842:7:273:-16.2053,0,-67.3506 0/0:32:30,2:30:1149:2:82:0,-1.85328,-95.8995 dDocent_Contig_15885 113 . T A 141.05 . AB=0.257143;ABP=20.9405;AC=3;AF=0.375;AN=8;AO=9;CIGAR=1X;DP=40;DPB=40;DPRA=2.33333;EPP=22.5536;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=0.666667;PAIREDR=0.806452;PAO=0;PQA=0;PQR=0;PRO=0;QA=322;QR=1070;RO=31;RPL=0;RPP=22.5536;RPPR=70.3259;RPR=9;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=70.3259;SRR=31;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:7:5,2:5:173:2:71:-4.63485,0,-13.803 0/1:17:13,4:13:446:4:143:-8.10394,0,-35.3511 0/0:5:5,0:5:174:0:0:0,-1.50515,-16.002 0/1:11:8,3:8:277:3:108:-6.76384,0,-21.9555 dDocent_Contig_15887 23 . A G 284.866 . AB=0.333333;ABP=11.6962;AC=3;AF=0.375;AN=8;AO=12;CIGAR=1X;DP=39;DPB=39;DPRA=4;EPP=29.068;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.916667;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=484;QR=1068;RO=27;RPL=0;RPP=29.068;RPPR=61.6401;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:6:3,3:3:113:3:122:-9.56631,0,-8.73312 0/0:3:3,0:3:123:0:0:0,-0.90309,-11.4648 0/1:21:14,7:14:556:7:280:-19.2476,0,-44.0573 0/1:9:7,2:7:276:2:82:-5.07041,0,-22.4987 dDocent_Contig_15888 8 . G A 1154.57 . AB=0.364341;ABP=23.6309;AC=4;AF=0.5;AN=8;AO=47;CIGAR=1X;DP=129;DPB=129;DPRA=0;EPP=105.07;EPPR=181.071;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=58.0122;NS=4;NUMALT=1;ODDS=0;PAIRED=0.489362;PAIREDR=0.5;PAO=0;PQA=0;PQR=0;PRO=0;QA=1781;QR=3134;RO=82;RPL=0;RPP=105.07;RPPR=181.071;RPR=47;RUN=1;SAF=47;SAP=105.07;SAR=0;SRF=82;SRP=181.071;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:58:36,22:36:1384:22:824:-57.0168,0,-107.372 0/1:37:28,9:28:1065:9:343:-20.0883,0,-79.2029 0/1:21:10,11:10:383:11:421:-31.9213,0,-28.5038 0/1:13:8,5:8:302:5:193:-13.828,0,-23.6224 dDocent_Contig_15889 49 . G C 74.7406 . AB=0.375;ABP=4.09604;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=29;DPB=29;DPRA=1.14286;EPP=9.52472;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=121;QR=1001;RO=26;RPL=0;RPP=9.52472;RPPR=59.4686;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:8:5,3:5:196:3:121:-8.87196,0,-15.6061 0/0:9:9,0:9:363:0:0:0,-2.70927,-33.0343 0/0:7:7,0:7:246:0:0:0,-2.10721,-22.4676 0/0:5:5,0:5:196:0:0:0,-1.50515,-18.0122 dDocent_Contig_15890 20 . T C 134.929 . AB=0.21875;ABP=24.9965;AC=2;AF=0.25;AN=8;AO=9;CIGAR=1X;DP=120;DPB=120;DPRA=0;EPP=22.5536;EPPR=244.044;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.981982;PAO=0;PQA=0;PQR=0;PRO=0;QA=337;QR=3911;RO=111;RPL=0;RPP=22.5536;RPPR=244.044;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=111;SRP=244.044;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:39:38,1:38:1331:1:10:0,-10.7402,-119.077 0/1:28:23,5:23:821:5:204:-10.3152,0,-65.7755 0/0:49:48,1:48:1689:1:41:0,-10.6559,-148.183 0/1:4:2,2:2:70:2:82:-6.57556,0,-5.4421 dDocent_Contig_15892 51 . A G 583.522 . AB=0.125;ABP=12.7819;AC=5;AF=0.625;AN=8;AO=17;CIGAR=1X;DP=32;DPB=32;DPRA=1;EPP=39.9253;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.235294;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=674;QR=572;RO=15;RPL=12;RPP=9.26925;RPPR=35.5824;RPR=5;RUN=1;SAF=12;SAP=9.26925;SAR=5;SRF=15;SRP=35.5824;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:8:8,0:8:304:0:0:0,-2.40824,-27.7155 1/1:8:0,8:0:0:8:315:-28.7136,-2.40824,0 0/1:8:7,1:7:268:1:41:-1.68633,0,-22.0712 1/1:8:0,8:0:0:8:318:-28.9868,-2.40824,0 dDocent_Contig_15893 33 . C T 114.89 . AB=0;ABP=0;AC=2;AF=0.25;AN=8;AO=3;CIGAR=1X;DP=51;DPB=51;DPRA=0.1875;EPP=9.52472;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.38813e-21;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=120;QR=1921;RO=48;RPL=0;RPP=9.52472;RPPR=107.241;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:20:20,0:20:798:0:0:0,-6.0206,-72.139 0/0:27:27,0:27:1082:0:0:0,-8.12781,-97.6704 1/1:3:0,3:0:0:3:120:-11.1873,-0.90309,0 0/0:1:1,0:1:41:0:0:0,-0.30103,-4.09457 dDocent_Contig_15894 21 . C T 619.881 . AB=0.271028;ABP=51.7365;AC=4;AF=0.5;AN=8;AO=29;CIGAR=1X;DP=107;DPB=107;DPRA=0;EPP=65.983;EPPR=172.385;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=0.931034;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1113;QR=3122;RO=78;RPL=0;RPP=65.983;RPPR=172.385;RPR=29;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=78;SRP=172.385;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:46:38,8:38:1512:8:314:-14.7731,0,-122.477 0/1:31:22,9:22:883:9:333:-20.973,0,-70.4433 0/1:23:14,9:14:567:9:350:-24.9309,0,-44.447 0/1:7:4,3:4:160:3:116:-8.70907,0,-12.6757 dDocent_Contig_15895 58 . C T 259.195 . AB=0.47619;ABP=3.1137;AC=2;AF=0.25;AN=8;AO=10;CIGAR=1X;DP=40;DPB=40;DPRA=1.10526;EPP=24.725;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=387;QR=1171;RO=30;RPL=10;RPP=24.725;RPPR=68.1545;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:6:6,0:6:233:0:0:0,-1.80618,-21.3401 0/1:15:10,5:10:392:5:192:-13.1343,0,-31.1228 0/0:13:13,0:13:506:0:0:0,-3.91339,-45.8871 0/1:6:1,5:1:40:5:195:-16.118,0,-2.1895 dDocent_Contig_15896 36 . T C 180.507 . AB=0.333333;ABP=8.07707;AC=2;AF=0.25;AN=8;AO=7;CIGAR=1X;DP=33;DPB=33;DPRA=1.75;EPP=18.2106;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=282;QR=1052;RO=26;RPL=0;RPP=18.2106;RPPR=59.4686;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:4:4,0:4:160:0:0:0,-1.20412,-14.7834 0/1:8:2,6:2:81:6:242:-19.7482,0,-5.27749 0/1:13:12,1:12:487:1:40:-0.0822893,0,-40.2675 0/0:8:8,0:8:324:0:0:0,-2.40824,-29.5294 dDocent_Contig_15897 35 . T G 41.0898 . AB=0.5;ABP=3.0103;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=20;DPB=20;DPRA=0.5;EPP=3.0103;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=72;QR=700;RO=18;RPL=2;RPP=7.35324;RPPR=42.0968;RPR=0;RUN=1;SAF=1;SAP=3.0103;SAR=1;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 0/1:4:2,2:2:78:2:72:-5.63179,0,-6.19935 0/0:10:10,0:10:389:0:0:0,-3.0103,-35.3579 0/0:6:6,0:6:233:0:0:0,-1.80618,-21.3369 dDocent_Contig_15898 17 . T C 337.58 . AB=0.541667;ABP=3.37221;AC=3;AF=0.375;AN=8;AO=13;CIGAR=1X2M1X3M7D1M;DP=31;DPB=24.9333;DPRA=1.14286;EPP=31.2394;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=59.3846;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=0.461538;PAIREDR=0.888889;PAO=0;PQA=0;PQR=0;PRO=0;QA=503;QR=692;RO=18;RPL=0;RPP=31.2394;RPPR=42.0968;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:9:6,3:6:235:3:111:-7.63946,0,-18.8118 0|1:6:2,4:2:70:4:161:-13.0691,0,-4.8393 0|0:7:7,0:7:267:0:0:0,-2.10721,-24.3909 0|1:9:3,6:3:120:6:231:-18.4472,0,-8.47842 dDocent_Contig_15899 180 . A G 85.0675 . AB=0.75;ABP=5.18177;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=19;DPB=19;DPRA=0.8;EPP=9.52472;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=119;QR=643;RO=16;RPL=3;RPP=9.52472;RPPR=37.7539;RPR=0;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=37.7539;SRR=16;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:4:1,3:1:41:3:119:-9.89038,0,-2.89045 0/0:1:1,0:1:41:0:0:0,-0.30103,-4.09457 0/0:8:8,0:8:319:0:0:0,-2.40824,-29.0751 0/0:6:6,0:6:242:0:0:0,-1.80618,-22.1575 dDocent_Contig_15900 109 . A G 867.262 . AB=0.719512;ABP=37.3302;AC=5;AF=0.625;AN=8;AO=81;CIGAR=1X;DP=106;DPB=106;DPRA=0;EPP=178.9;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=21.1605;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2719;QR=863;RO=25;RPL=0;RPP=178.9;RPPR=57.2971;RPR=81;RUN=1;SAF=0;SAP=178.9;SAR=81;SRF=0;SRP=57.2971;SRR=25;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:39:5,34:5:175:34:1160:-44.8305,0,-4.35346 1/1:24:2,22:2:69:22:757:-34.8759,-0.672057,0 0/1:21:6,15:6:205:15:502:-10.4088,0,-12.4635 0/1:22:12,10:12:414:10:300:-0.879834,0,-30.9689 dDocent_Contig_15901 23 . T C 202.132 . AB=0.347826;ABP=7.63648;AC=1;AF=0.125;AN=8;AO=11;CIGAR=1X;DP=98;DPB=98;DPRA=1.64865;EPP=26.8965;EPPR=191.928;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.988506;PAO=0;PQA=0;PQR=0;PRO=0;QA=431;QR=3370;RO=87;RPL=0;RPP=26.8965;RPPR=191.928;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=87;SRP=191.928;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:15,8:15:567:8:313:-21.6107,0,-44.4422 0/0:38:35,3:35:1363:3:118:0,-0.436252,-111.939 0/0:24:24,0:24:940:0:0:0,-7.22472,-84.9053 0/0:13:13,0:13:500:0:0:0,-3.91339,-45.3441 dDocent_Contig_15902 123 . T G 323.82 . AB=0.346939;ABP=12.9813;AC=3;AF=0.5;AN=6;AO=17;CIGAR=1X;DP=49;DPB=49;DPRA=0;EPP=39.9253;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=574;QR=1023;RO=32;RPL=0;RPP=39.9253;RPPR=72.4974;RPR=17;RUN=1;SAF=0;SAP=39.9253;SAR=17;SRF=0;SRP=72.4974;SRR=32;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:8:3,5:3:97:5:170:-13.2265,0,-6.64269 ./.:.:.:.:.:.:.:. 0/1:21:15,6:15:470:6:194:-11.4566,0,-36.2803 0/1:20:14,6:14:456:6:210:-13.2217,0,-35.3333 dDocent_Contig_15903 21 . T A 839.244 . AB=0.336735;ABP=25.7;AC=2;AF=0.5;AN=4;AO=33;CIGAR=1X;DP=98;DPB=98;DPRA=0;EPP=74.6689;EPPR=144.156;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1294;QR=2512;RO=65;RPL=0;RPP=74.6689;RPPR=144.156;RPR=33;RUN=1;SAF=33;SAP=74.6689;SAR=0;SRF=65;SRP=144.156;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:64:40,24:40:1546:24:931:-64.8235,0,-120.139 0/1:34:25,9:25:966:9:363:-22.7998,0,-77.0151 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_15904 98 . N T 288.856 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=9;CIGAR=1X;DP=9;DPB=9;DPRA=0;EPP=22.5536;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=310;QR=0;RO=0;RPL=9;RPP=22.5536;RPPR=0;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:8:0,8:0:0:8:275:-25.0848,-2.40824,0 1/1:1:0,1:0:0:1:35:-3.49863,-0.30103,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_15909 139 . A T 66.164 . AB=0;ABP=0;AC=2;AF=0.25;AN=8;AO=4;CIGAR=1X;DP=35;DPB=35;DPRA=0.296296;EPP=11.6962;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=22;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=140;QR=1076;RO=31;RPL=0;RPP=11.6962;RPPR=70.3259;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=70.3259;SRR=31;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:15:15,0:15:518:0:0:0,-4.51545,-46.9482 0/0:12:12,0:12:418:0:0:0,-3.61236,-37.9539 1/1:2:0,2:0:0:2:70:-6.31486,-0.60206,0 0/0:6:4,2:4:140:2:70:0,-0.666957,-11.8057 dDocent_Contig_15910 15 . G A 509.077 . AB=0.37037;ABP=10.8919;AC=3;AF=0.375;AN=8;AO=20;CIGAR=1X;DP=58;DPB=58;DPRA=4.5;EPP=46.4397;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.8;PAIREDR=0.736842;PAO=0;PQA=0;PQR=0;PRO=0;QA=794;QR=1503;RO=38;RPL=0;RPP=46.4397;RPPR=85.5263;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:8,2:8:319:2:78:-4.39317,0,-26.0648 0/1:17:7,10:7:274:10:407:-31.8725,0,-19.9067 0/1:27:19,8:19:763:8:309:-20.0394,0,-60.8617 0/0:4:4,0:4:147:0:0:0,-1.20412,-13.5847 dDocent_Contig_15911 34 . G A 748.701 . AB=0.565217;ABP=4.70971;AC=3;AF=0.5;AN=6;AO=26;CIGAR=1X;DP=46;DPB=46;DPRA=0;EPP=59.4686;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.807692;PAIREDR=0.85;PAO=0;PQA=0;PQR=0;PRO=0;QA=1035;QR=792;RO=20;RPL=0;RPP=59.4686;RPPR=46.4397;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:11,3:11:427:3:120:-6.97289,0,-34.5652 0/1:15:5,10:5:204:10:397:-31.5728,0,-14.2286 0/1:17:4,13:4:161:13:518:-41.8473,0,-9.75797 ./.:.:.:.:.:.:.:. dDocent_Contig_15912 49 . G T 87.3937 . AB=0.5;ABP=3.0103;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=85;DPB=85;DPRA=0.311688;EPP=11.6962;EPPR=178.9;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.91358;PAO=0;PQA=0;PQR=0;PRO=0;QA=139;QR=3226;RO=81;RPL=0;RPP=11.6962;RPPR=178.9;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=81;SRP=178.9;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:29:29,0:29:1165:0:0:0,-8.72987,-105.129 0/0:43:43,0:43:1708:0:0:0,-12.9443,-153.944 0/0:5:5,0:5:195:0:0:0,-1.50515,-17.9226 0/1:8:4,4:4:158:4:139:-10.4383,0,-12.1911 dDocent_Contig_15913 10 . G A 500.934 . AB=0.484848;ABP=3.0761;AC=4;AF=0.5;AN=8;AO=16;CIGAR=1X3M1X;DP=57;DPB=57;DPRA=1.375;EPP=37.7539;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=626;QR=1514;RO=39;RPL=0;RPP=37.7539;RPPR=87.6977;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:17:8,0,9:8:313:0,9:0,349:-26.6465,-29.0548,-54.7916,0,-26.126,-23.4167 1|1:2:0,2,0:0:0:2,0:67,0:-6.36148,-0.60206,0,-6.36148,-0.60206,-6.36148 0|0:22:22,0,0:22:849:0,0:0,0:0,-6.62266,-76.725,-6.62266,-76.725,-76.725 0|1:16:9,0,7:9:352:0,7:0,277:-20.4827,-23.192,-52.1299,0,-29.3312,-27.224 dDocent_Contig_15914 54 . C A 30.1414 . AB=0.178571;ABP=28.1373;AC=2;AF=0.25;AN=8;AO=6;CIGAR=1X;DP=74;DPB=74;DPRA=0.615385;EPP=16.0391;EPPR=150.67;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.833333;PAIREDR=0.529412;PAO=0;PQA=0;PQR=0;PRO=0;QA=182;QR=2302;RO=68;RPL=6;RPP=16.0391;RPPR=150.67;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=68;SRP=150.67;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:14,3:14:472:3:102:-4.39944,0,-37.6844 0/0:20:19,1:19:651:1:34:0,-2.62169,-55.513 0/0:26:26,0:26:877:0:0:0,-7.82678,-79.2403 0/1:11:9,2:9:302:2:46:-1.05736,0,-24.1948 dDocent_Contig_15915 116 . T C 104.513 . AB=0.2;ABP=34.2795;AC=2;AF=0.25;AN=8;AO=8;CIGAR=1X;DP=58;DPB=58;DPRA=2.22222;EPP=20.3821;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.94;PAO=0;PQA=0;PQR=0;PRO=0;QA=280;QR=1735;RO=50;RPL=0;RPP=20.3821;RPPR=111.584;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=111.584;SRR=50;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:17:17,0:17:598:0:0:0,-5.11751,-54.1486 0/1:25:21,4:21:728:4:140:-5.41918,0,-58.3133 0/1:15:11,4:11:373:4:140:-8.42948,0,-29.3806 0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827 dDocent_Contig_15916 52 . C T 82.7303 . AB=0.25;ABP=13.8677;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=45;DPB=45;DPRA=2.4;EPP=13.8677;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=174;QR=1582;RO=40;RPL=5;RPP=13.8677;RPPR=89.8692;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:12:12,0:12:474:0:0:0,-3.61236,-43.0083 0/1:20:15,5:15:604:5:174:-9.97193,0,-48.6787 0/0:4:4,0:4:152:0:0:0,-1.20412,-14.0474 0/0:9:9,0:9:352:0:0:0,-2.70927,-32.0377 dDocent_Contig_15917 33 . G T 131.968 . AB=0.333333;ABP=5.9056;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1M1I10M1X1M1X;DP=33;DPB=33.7143;DPRA=1.33333;EPP=11.6962;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=155;QR=992;RO=26;RPL=0;RPP=11.6962;RPPR=59.4686;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:12:8,4,0:8:317:4,0:155,0:-10.7126,0,-25.2846,-13.1209,-26.4887,-39.2195 0|0:10:8,0,2:8:306:0,2:0,81:-4.67543,-7.08367,-32.1724,0,-25.4888,-24.8867 0|0:2:1,0,1:1:40:0,1:0,38:-3.19521,-3.49624,-6.80124,0,-3.69465,-3.39362 0|0:9:9,0,0:9:329:0,0:0,0:0,-2.70927,-29.9533,-2.70927,-29.9533,-29.9533 dDocent_Contig_15918 23 . T C 71.2464 . AB=0.5;ABP=3.0103;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=35;DPB=35;DPRA=0.62069;EPP=9.52472;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=114;QR=1246;RO=32;RPL=0;RPP=9.52472;RPPR=72.4974;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:9:9,0:9:358:0:0:0,-2.70927,-32.5809 0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827 0/1:6:3,3:3:107:3:114:-8.82304,0,-8.17022 0/0:19:19,0:19:745:0:0:0,-5.71957,-67.3681 dDocent_Contig_15919 29 . C T 701.768 . AB=0.333333;ABP=23.2774;AC=4;AF=0.5;AN=8;AO=28;CIGAR=1X;DP=84;DPB=84;DPRA=0;EPP=63.8115;EPPR=122.441;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1126;QR=2184;RO=55;RPL=0;RPP=63.8115;RPPR=122.441;RPR=28;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:21,5:21:824:5:204:-10.9173,0,-66.6448 0/1:31:12,18:12:484:18:720:-55.8188,0,-34.6 0/1:23:20,3:20:797:3:121:-4.35651,0,-65.1232 0/1:4:2,2:2:79:2:81:-6.48161,0,-6.29312 dDocent_Contig_15920 7 . A C 3871.04 . AB=0.0729927;ABP=219.983;AC=0;AF=0;AN=8;AO=17;CIGAR=2X1M1X;DP=239;DPB=239;DPRA=0;EPP=39.9253;EPPR=68.1545;GTI=0;LEN=1;MEANALT=3;MQM=46.0588;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=649;QR=1138;RO=30;RPL=0;RPP=39.9253;RPPR=68.1545;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:66:11,47,7:11:418:47,7:1789,270:-99.3417,0,-20.1339,-80.8162,-12.4569,-113.007 0|0:64:4,53,5:4:142:53,5:2029,187:-122.129,-4.37641,0,-108.58,-1.1894,-118.649 0|0:71:12,55,3:12:461:55,3:2083,115:-113.091,0,-21.2987,-107.403,-28.5612,-144.363 0|0:38:3,33,2:3:117:33,2:1231,77:-55.9402,-0.310101,0,-50.6103,-3.71406,-59.6396 dDocent_Contig_15921 16 . A G 1491.23 . AB=0.541667;ABP=4.45795;AC=4;AF=0.5;AN=8;AO=52;CIGAR=1X;DP=96;DPB=96;DPRA=0;EPP=115.927;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.653846;PAIREDR=0.522727;PAO=0;PQA=0;PQR=0;PRO=0;QA=2045;QR=1747;RO=44;RPL=0;RPP=115.927;RPPR=98.5551;RPR=52;RUN=1;SAF=52;SAP=115.927;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:14,5:14:546:5:202:-12.8419,0,-43.7619 0/1:35:16,19:16:633:19:756:-57.826,0,-46.7681 0/1:19:6,13:6:243:13:505:-40.0661,0,-16.5286 0/1:23:8,15:8:325:15:582:-45.7869,0,-22.6959 dDocent_Contig_15922 24 . T C 713.413 . AB=0.3;ABP=37.7539;AC=4;AF=0.5;AN=8;AO=30;CIGAR=1X;DP=100;DPB=100;DPRA=0;EPP=68.1545;EPPR=155.013;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=0.0333333;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1193;QR=2746;RO=70;RPL=0;RPP=68.1545;RPPR=155.013;RPR=30;RUN=1;SAF=30;SAP=68.1545;SAR=0;SRF=70;SRP=155.013;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:54:44,10:44:1710:10:404:-20.4644,0,-137.86 0/1:25:12,13:12:471:13:509:-38.6302,0,-35.2089 0/1:13:10,3:10:406:3:116:-6.90289,0,-32.987 0/1:8:4,4:4:159:4:164:-12.7417,0,-12.2832 dDocent_Contig_15923 21 . A T 41.6327 . AB=0.166667;ABP=20.3821;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=49;DPB=49;DPRA=1.74194;EPP=9.52472;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.456522;PAO=0;PQA=0;PQR=0;PRO=0;QA=121;QR=1853;RO=46;RPL=0;RPP=9.52472;RPPR=102.898;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:9:9,0:9:365:0:0:0,-2.70927,-33.2149 0/0:21:21,0:21:840:0:0:0,-6.32163,-75.9123 0/1:18:15,3:15:607:3:121:-5.86166,0,-49.5497 0/0:1:1,0:1:41:0:0:0,-0.30103,-4.09457 dDocent_Contig_15924 22 . G A 835.881 . AB=0.230769;ABP=52.119;AC=2;AF=0.25;AN=8;AO=18;CIGAR=1X2M1X;DP=78;DPB=78;DPRA=0;EPP=42.0968;EPPR=79.0118;GTI=0;LEN=1;MEANALT=2.25;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=714;QR=1369;RO=35;RPL=0;RPP=42.0968;RPPR=79.0118;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:23:7,4,11:7:279:4,11:161,434:-33.5937,-22.4301,-44.2032,0,-9.70308,-19.6617 1|0:21:5,8,8:5:190:8,8:316,316:-34.9336,-10.438,-23.6027,-10.437,0,-23.6017 0|1:18:12,5,1:12:470:5,1:197,40:-12.5898,0,-37.1331,-12.9061,-35.3425,-51.2493 0|0:16:11,1,4:11:430:1,4:40,160:-9.86899,-9.88524,-44.9299,0,-32.0482,-34.1399 dDocent_Contig_15926 8 . G A 261.84 . AB=0.185185;ABP=49.4959;AC=4;AF=0.5;AN=8;AO=10;CIGAR=1X3M;DP=63;DPB=63;DPRA=0;EPP=24.725;EPPR=89.8692;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.8;PAIREDR=0.75;PAO=0;PQA=0;PQR=0;PRO=0;QA=390;QR=1558;RO=40;RPL=0;RPP=24.725;RPPR=89.8692;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:27:17,6,4:17:665:6,4:236,156:-14.2981,0,-52.8725,-6.59347,-41.8554,-60.0655 0|1:22:14,4,4:14:537:4,4:157,156:-8.69953,0,-42.8669,-0.0916811,-31.246,-42.9566 0|1:9:7,2,0:7:276:2,0:78,0:-4.6942,0,-22.5006,-6.80141,-23.1027,-29.5135 0|1:5:2,1,2:2:80:1,2:39,78:-5.8097,-3.20588,-9.49997,0,-3.3942,-5.99471 dDocent_Contig_15927 9 . C G 240.324 . AB=0.175824;ABP=86.0751;AC=3;AF=0.375;AN=8;AO=16;CIGAR=1X;DP=121;DPB=121;DPRA=1.01111;EPP=37.7539;EPPR=231.015;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=0;PAIREDR=0.771429;PAO=0;PQA=0;PQR=0;PRO=0;QA=619;QR=3953;RO=105;RPL=0;RPP=37.7539;RPPR=231.015;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=105;SRP=231.015;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:65:54,11:54:2058:11:425:-19.0375,0,-165.881 0/1:7:5,2:5:181:2:77:-5.20193,0,-14.5345 0/1:19:16,3:16:609:3:117:-5.19081,0,-49.4249 0/0:30:30,0:30:1105:0:0:0,-9.0309,-99.749 dDocent_Contig_15929 142 . A G 7885.75 . AB=0.886905;ABP=221.45;AC=5;AF=0.625;AN=8;AO=243;CIGAR=1X3M1X;DP=266;DPB=266;DPRA=0;EPP=530.678;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=59.963;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=9540;QR=903;RO=23;RPL=0;RPP=530.678;RPPR=52.9542;RPR=243;RUN=1;SAF=0;SAP=530.678;SAR=243;SRF=0;SRP=52.9542;SRR=23;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:111:10,101:10:389:101:3957:-322.743,0,-1.95068 1|1:98:4,94:4:161:94:3674:-315.827,-14.6255,0 0|1:27:3,24:3:120:24:960:-78.5755,0,-3.06009 0|1:30:6,24:6:233:24:949:-76.6826,0,-12.3069 dDocent_Contig_15931 12 . C A 39.54 . AB=0.157895;ABP=22.325;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=100;DPB=100;DPRA=1.04082;EPP=11.6962;EPPR=211.472;GTI=0;LEN=1;MEANALT=1;MQM=58.75;MQMR=59.8958;NS=4;NUMALT=1;ODDS=0;PAIRED=0.75;PAIREDR=0.84375;PAO=0;PQA=0;PQR=0;PRO=0;QA=163;QR=3860;RO=96;RPL=0;RPP=11.6962;RPPR=211.472;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=96;SRP=211.472;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:35:35,0:35:1391:0:0:0,-10.536,-125.443 0/0:14:14,0:14:565:0:0:0,-4.21442,-51.1924 0/0:32:31,1:31:1256:1:41:0,-5.54991,-109.223 0/1:19:16,3:16:648:3:122:-5.65292,0,-52.9143 dDocent_Contig_15933 43 . G C 695.569 . AB=0.238806;ABP=82.4149;AC=4;AF=0.5;AN=8;AO=32;CIGAR=1X;DP=134;DPB=134;DPRA=0;EPP=72.4974;EPPR=224.5;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.78125;PAIREDR=0.921569;PAO=0;PQA=0;PQR=0;PRO=0;QA=1287;QR=3896;RO=102;RPL=0;RPP=72.4974;RPPR=224.5;RPR=32;RUN=1;SAF=32;SAP=72.4974;SAR=0;SRF=102;SRP=224.5;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:53:44,9:44:1756:9:363:-17.0795,0,-142.303 0/1:50:34,16:34:1305:16:644:-43.2419,0,-102.657 0/1:24:20,4:20:674:4:164:-7.92518,0,-53.7169 0/1:7:4,3:4:161:3:116:-8.7083,0,-12.7681 dDocent_Contig_15936 107 . N A 99.8271 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=107;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:107:-9.98217,-0.90309,0 ./.:.:.:.:.:.:.:. dDocent_Contig_15938 22 . T C 60.4274 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=20;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=105;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:70:-4.1399,-0.60206,0 1/1:1:0,1:0:0:1:35:-1.5947,-0.30103,0 ./.:.:.:.:.:.:.:. dDocent_Contig_15940 11 . G A 35.2082 . AB=0.333333;ABP=4.45795;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X;DP=47;DPB=47;DPRA=0.439024;EPP=7.35324;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=74;QR=1785;RO=45;RPL=0;RPP=7.35324;RPPR=100.727;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:26:26,0:26:1035:0:0:0,-7.82678,-93.4421 0/0:11:11,0:11:428:0:0:0,-3.31133,-38.8653 0/1:6:4,2:4:162:2:74:-5.21959,0,-13.1606 0/0:4:4,0:4:160:0:0:0,-1.20412,-14.7834 dDocent_Contig_15941 8 . G A 6844.02 . AB=0.0666667;ABP=565.711;AC=0;AF=0;AN=8;AO=23;CIGAR=1X1M1X2M1X;DP=382;DPB=382;DPRA=0;EPP=52.9542;EPPR=89.8692;GTI=0;LEN=1;MEANALT=9;MQM=58.9565;MQMR=60;NS=4;NUMALT=7;ODDS=0;PAIRED=0;PAIREDR=0.575;PAO=0;PQA=0;PQR=0;PRO=0;QA=875;QR=1541;RO=40;RPL=0;RPP=52.9542;RPPR=89.8692;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:129:11,1,9,89,0,9,1,0:11:426:1,9,89,0,9,1,0:40,343,3445,0,361,40,0:-279.652,-279.668,-314.362,-254.828,-286.528,-287.114,0,-31.6983,-6.86123,-8.20196,-282.963,-314.663,-289.823,-34.9936,-317.958,-253.218,-284.918,-260.078,-5.24626,-288.213,-285.503,-279.668,-311.368,-286.528,-31.6983,-314.663,-284.918,-314.362,-282.963,-314.663,-289.823,-34.9936,-317.958,-288.213,-314.663,-317.958 0|0:137:17,0,9,64,0,16,11,9:17:656:0,9,64,0,16,11,9:0,346,2495,0,631,430,355:-199.609,-204.727,-258.597,-176.551,-230.421,-227.712,0,-53.87,-25.6946,-34.604,-204.727,-258.597,-230.421,-53.87,-258.597,-152.811,-206.681,-178.505,-1.95325,-206.681,-201.865,-169.375,-223.246,-195.07,-18.5184,-223.246,-171.33,-219.934,-175.52,-229.391,-201.215,-24.6633,-229.391,-177.475,-194.039,-226.682 0|0:79:7,5,5,40,0,14,0,0:7:270:5,5,40,0,14,0,0:198,186,1512,0,541,0,0:-144.07,-129.879,-150.544,-130.955,-136.827,-151.62,-22.2618,-28.1334,-29.2116,-32.3912,-146.177,-152.049,-153.125,-44.4324,-168.347,-101.745,-107.617,-108.694,0,-123.916,-119.701,-146.177,-152.049,-153.125,-44.4324,-168.347,-123.916,-168.347,-146.177,-152.049,-153.125,-44.4324,-168.347,-123.916,-168.347,-168.347 0|0:37:5,0,0,21,2,6,1,1:5:189:0,0,21,2,6,1,1:0,0,804,74,237,40,41:-68.4684,-69.9736,-85.4641,-69.9736,-85.4641,-85.4641,-4.01914,-19.5062,-19.5062,-13.1846,-63.9216,-79.4119,-79.4119,-13.4558,-78.8099,-50.4694,-65.9601,-65.9601,0,-59.9079,-64.1539,-66.678,-82.1686,-82.1686,-16.2104,-76.1164,-62.6644,-81.8676,-66.5887,-82.0794,-82.0794,-16.1207,-76.0271,-62.5751,-78.7838,-81.7783 dDocent_Contig_15942 109 . C T 214.816 . AB=0.473684;ABP=3.12459;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X;DP=28;DPB=28;DPRA=6.33333;EPP=22.5536;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=314;QR=610;RO=19;RPL=0;RPP=22.5536;RPPR=44.2683;RPR=9;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=44.2683;SRR=19;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:10,9:10:326:9:314:-22.8783,0,-23.9362 0/0:1:1,0:1:35:0:0:0,-0.30103,-3.49863 0/0:1:1,0:1:35:0:0:0,-0.30103,-3.49863 0/0:7:7,0:7:214:0:0:0,-2.10721,-19.5587 dDocent_Contig_15943 8 . G A 499.97 . AB=0.434783;ABP=4.70971;AC=4;AF=0.5;AN=8;AO=20;CIGAR=1X;DP=46;DPB=46;DPRA=0;EPP=46.4397;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.25;PAIREDR=0.538462;PAO=0;PQA=0;PQR=0;PRO=0;QA=775;QR=1001;RO=26;RPL=0;RPP=46.4397;RPPR=59.4686;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:7:5,2:5:187:2:78:-5.29626,0,-15.0845 0/1:10:6,4:6:232:4:156:-11.407,0,-18.2386 0/1:14:6,8:6:231:8:310:-24.0492,0,-16.9435 0/1:15:9,6:9:351:6:231:-16.6425,0,-27.4364 dDocent_Contig_15944 13 . A C 56.6485 . AB=0.15625;ABP=35.8538;AC=2;AF=0.25;AN=8;AO=5;CIGAR=1X;DP=48;DPB=48;DPRA=2;EPP=13.8677;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=199;QR=1720;RO=43;RPL=0;RPP=13.8677;RPPR=96.3836;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:13,2:13:519:2:81:-3.17028,0,-42.5397 0/1:17:14,3:14:556:3:118:-5.88521,0,-45.2565 0/0:7:7,0:7:287:0:0:0,-2.10721,-26.2052 0/0:9:9,0:9:358:0:0:0,-2.70927,-32.5812 dDocent_Contig_15945 94 . A G 238.877 . AB=0.4375;ABP=3.55317;AC=4;AF=0.5;AN=8;AO=10;CIGAR=1X;DP=25;DPB=25;DPRA=1.05556;EPP=24.725;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=345;QR=514;RO=15;RPL=10;RPP=24.725;RPPR=35.5824;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=15;SRP=35.5824;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:8,6:8:275:6:208:-14.8452,0,-20.8706 0/0:6:6,0:6:204:0:0:0,-1.80618,-18.6934 1/1:3:0,3:0:0:3:102:-9.51695,-0.90309,0 0/1:2:1,1:1:35:1:35:-2.89657,0,-2.89657 dDocent_Contig_15946 67 . G A 30.3112 . AB=0.285714;ABP=5.80219;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=41;DPB=41;DPRA=1.41176;EPP=9.52472;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.789474;PAO=0;PQA=0;PQR=0;PRO=0;QA=108;QR=1287;RO=38;RPL=3;RPP=9.52472;RPPR=85.5263;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:3:3,0:3:107:0:0:0,-0.90309,-9.98217 0/0:14:14,0:14:471:0:0:0,-4.21442,-42.7102 0/0:17:16,1:16:529:1:36:0,-1.51923,-44.3239 0/1:7:5,2:5:180:2:72:-4.72951,0,-14.4449 dDocent_Contig_15947 32 . T C 820.362 . AB=0.55814;ABP=4.27278;AC=5;AF=0.625;AN=8;AO=28;CIGAR=1X;DP=47;DPB=47;DPRA=0;EPP=63.8115;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1099;QR=739;RO=19;RPL=0;RPP=63.8115;RPPR=44.2683;RPR=28;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:8,6:8:326:6:242:-17.9429,0,-25.4954 0/1:15:5,10:5:168:10:385:-30.482,0,-10.9287 0/1:14:6,8:6:245:8:313:-24.3177,0,-18.2151 1/1:4:0,4:0:0:4:159:-14.6914,-1.20412,0 dDocent_Contig_15948 37 . T A 282.028 . AB=0.0126582;ABP=165.981;AC=0;AF=0;AN=8;AO=5;CIGAR=3M1X1M;DP=191;DPB=185;DPRA=1.72043;EPP=13.8677;EPPR=367.818;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.982143;PAO=0;PQA=0;PQR=0;PRO=0;QA=48;QR=6271;RO=168;RPL=0;RPP=13.8677;RPPR=367.818;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=168;SRP=367.818;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:79:62,15,1:62:2335:15,1:584,8:-29.6007,0,-187.104,-47.8626,-191.205,-238.899 0|0:50:48,0,2:48:1804:0,2:0,24:0,-14.4494,-162.488,-12.7715,-160.94,-160.338 0|0:31:27,0,2:27:982:0,2:0,16:0,-8.12781,-88.4971,-7.37224,-87.677,-87.0749 0|0:31:31,0,0:31:1150:0,0:0,0:0,-9.33193,-103.798,-9.33193,-103.798,-103.798 dDocent_Contig_15951 12 . A T 314.778 . AB=0.875;ABP=12.7819;AC=3;AF=0.375;AN=8;AO=12;CIGAR=1X;DP=53;DPB=53;DPRA=0.325;EPP=29.068;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=32.9167;MQMR=60;NS=4;NUMALT=1;ODDS=8.67362e-19;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=474;QR=1645;RO=41;RPL=0;RPP=29.068;RPPR=92.0407;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:5:0,5:0:0:5:196:-14.97,-1.50515,0 0/0:35:35,0:35:1401:0:0:0,-10.536,-126.348 0/0:5:5,0:5:203:0:0:0,-1.50515,-18.6531 0/1:8:1,7:1:41:7:278:-17.5422,0,-1.68633 dDocent_Contig_15952 21 . G A 39.8872 . AB=0.285714;ABP=5.80219;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X3M1X;DP=50;DPB=50;DPRA=1.94118;EPP=9.52472;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=120;QR=1690;RO=43;RPL=0;RPP=9.52472;RPPR=96.3836;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:7:4,2:4:160:2:80:-5.38604,0,-12.5777 0|0:26:25,1:25:979:1:40:0,-3.8311,-84.4142 0|0:2:1,0:1:40:0:0:0,-0.30103,-3.62595 0|0:15:13,0:13:511:0:0:0,-3.91339,-45.9734 dDocent_Contig_15955 98 . N A 70.3233 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=3.0103;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=53;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=75;QR=0;RO=0;RPL=1;RPP=3.0103;RPPR=0;RPR=1;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:75:-7.03125,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_15956 152 . A G 221.445 . AB=0.207547;ABP=42.3836;AC=1;AF=0.125;AN=8;AO=14;CIGAR=1X;DP=104;DPB=104;DPRA=9.4;EPP=33.4109;EPPR=198.443;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=554;QR=3519;RO=90;RPL=0;RPP=33.4109;RPPR=198.443;RPR=14;RUN=1;SAF=0;SAP=33.4109;SAR=14;SRF=0;SRP=198.443;SRR=90;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:53:42,11:42:1678:11:435:-23.5423,0,-135.29 0/0:41:38,3:38:1448:3:119:0,-1.24705,-119.461 0/0:6:6,0:6:234:0:0:0,-1.80618,-21.4299 0/0:4:4,0:4:159:0:0:0,-1.20412,-14.6908 dDocent_Contig_15959 13 . T C 1512.06 . AB=0.440678;ABP=6.61715;AC=4;AF=0.5;AN=8;AO=52;CIGAR=2X2M1X;DP=118;DPB=118;DPRA=0;EPP=115.927;EPPR=128.956;GTI=0;LEN=1;MEANALT=1.75;MQM=59.7692;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2053;QR=2266;RO=58;RPL=0;RPP=115.927;RPPR=128.956;RPR=52;RUN=1;SAF=52;SAP=115.927;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:55:38,2,15:38:1493:2,15:78,600:-37.9933,-43.0279,-165.215,0,-116.392,-118.282 0|1:49:18,4,27:18:700:4,27:160,1049:-80.7576,-72.9946,-129.312,0,-44.3302,-49.3845 0|1:7:2,0,5:2:73:0,5:0,203:-16.5458,-17.1479,-23.1005,0,-6.32904,-4.82389 0|1:7:0,2,5:0:0:2,5:78,201:-23.3069,-16.8983,-16.2962,-6.80124,0,-5.29609 dDocent_Contig_15960 16 . A T 35.9677 . AB=0.25;ABP=7.35324;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X;DP=78;DPB=78;DPRA=0.342857;EPP=7.35324;EPPR=168.042;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=78;QR=3021;RO=76;RPL=0;RPP=7.35324;RPPR=168.042;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=76;SRP=168.042;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:8:6,2:6:243:2:78:-4.99454,0,-19.8399 0/0:38:38,0:38:1502:0:0:0,-11.4391,-135.432 0/0:28:28,0:28:1124:0:0:0,-8.42884,-101.444 0/0:4:4,0:4:152:0:0:0,-1.20412,-14.0477 dDocent_Contig_15961 27 . G A 233.098 . AB=0.571429;ABP=3.63072;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X;DP=99;DPB=99;DPRA=0.433962;EPP=24.725;EPPR=196.271;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=404;QR=3567;RO=89;RPL=0;RPP=24.725;RPPR=196.271;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=89;SRP=196.271;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 0/0:53:53,0:53:2136:0:0:0,-15.9546,-192.409 0/0:32:30,2:30:1188:2:82:0,-1.85328,-99.4147 0/1:14:6,8:6:243:8:322:-25.1337,0,-18.0338 dDocent_Contig_15962 28 . A T 499.508 . AB=0.350877;ABP=14.02;AC=4;AF=0.5;AN=8;AO=20;CIGAR=1X;DP=57;DPB=57;DPRA=0;EPP=46.4397;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.972973;PAO=0;PQA=0;PQR=0;PRO=0;QA=800;QR=1472;RO=37;RPL=0;RPP=46.4397;RPPR=83.3548;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:10,9:10:401:9:366:-27.5854,0,-30.7292 0/1:9:8,1:8:318:1:37:-0.988559,0,-26.2764 0/1:18:14,4:14:551:4:157:-9.08975,0,-44.5107 0/1:11:5,6:5:202:6:240:-18.6632,0,-15.2502 dDocent_Contig_15963 49 . C A 323.353 . AB=0.153846;ABP=16.5402;AC=1;AF=0.125;AN=8;AO=2;CIGAR=2M9I8M1X1M1X;DP=105;DPB=128.077;DPRA=0;EPP=7.35324;EPPR=107.408;GTI=0;LEN=1;MEANALT=9;MQM=52.5;MQMR=60;NS=4;NUMALT=8;ODDS=0;PAIRED=0.5;PAIREDR=0.826923;PAO=0;PQA=0;PQR=0;PRO=0;QA=46;QR=2013;RO=52;RPL=2;RPP=7.35324;RPPR=115.927;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=51;SRP=107.408;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:46:32,4,1,0,0,0,0,3,0:32:1240:4,1,0,0,0,0,3,0:161,34,0,0,0,0,114,0:-3.65645,0,-100.705,-10.5323,-99.1517,-112.122,-13.2894,-101.909,-112.423,-115.181,-13.2894,-101.909,-112.423,-115.181,-115.181,-13.2894,-101.909,-112.423,-115.181,-115.181,-115.181,-13.2894,-101.909,-112.423,-115.181,-115.181,-115.181,-115.181,-3.93311,-92.5597,-103.075,-105.832,-105.832,-105.832,-105.832,-104.929,-13.2894,-101.909,-112.423,-115.181,-115.181,-115.181,-115.181,-105.832,-115.181 0|0:28:11,1,2,0,7,2,3,0,0:11:429:1,2,0,7,2,3,0,0:38,58,0,279,81,110,0,0:-19.6886,-19.8822,-54.8566,-18.3922,-50.547,-53.0615,-23,-55.1577,-53.6636,-58.2745,0,-32.1749,-30.6828,-35.2922,-33.185,-16.3149,-48.4759,-46.9822,-51.5928,-28.6087,-50.9907,-14.0073,-46.167,-44.6738,-49.2838,-26.3003,-42.6018,-48.3807,-23,-55.1577,-53.6636,-58.2745,-35.2922,-51.5928,-49.2838,-58.2745,-23,-55.1577,-53.6636,-58.2745,-35.2922,-51.5928,-49.2838,-58.2745,-58.2745 0|0:18:8,0,1,0,0,2,0,3,1:8:305:0,1,0,0,2,0,3,1:0,31,0,0,76,0,113,38:-6.86921,-9.27745,-34.3171,-6.7914,-31.8312,-31.5301,-9.27745,-34.3171,-31.8312,-34.3171,-9.27745,-34.3171,-31.8312,-34.3171,-34.3171,-3.03297,-28.0813,-25.5955,-28.0813,-28.0813,-27.4793,-9.27745,-34.3171,-31.8312,-34.3171,-34.3171,-28.0813,-34.3171,0,-25.0542,-22.5685,-25.0542,-25.0542,-18.817,-25.0542,-24.1511,-6.15561,-31.199,-28.7132,-31.199,-31.199,-24.9629,-31.199,-21.9355,-30.898 1|0:13:1,0,1,2,1,0,0,1,3:1:39:0,1,2,1,0,0,1,3:0,32,46,40,0,0,37,114:-9.35333,-9.65436,-12.8634,-7.07864,-10.2877,-9.98667,-6.14417,-9.35159,-6.77867,-8.74953,-6.35467,-9.56433,-6.98854,-6.05397,-9.2633,-9.65436,-12.8634,-10.2877,-9.35159,-9.56433,-12.8634,-9.65436,-12.8634,-10.2877,-9.35159,-9.56433,-12.8634,-12.8634,-6.62544,-9.83488,-7.25931,-6.32502,-6.53534,-9.83488,-9.83488,-9.53385,-0.294547,-3.50553,-0.929821,0,-0.204243,-3.50553,-3.50553,-0.475617,-2.60244 dDocent_Contig_15965 8 . G T 124.85 . AB=0;ABP=0;AC=0;AF=0;AN=8;AO=3;CIGAR=1X3M1X;DP=66;DPB=66;DPRA=4.625;EPP=9.52472;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=26;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=120;QR=2096;RO=55;RPL=0;RPP=9.52472;RPPR=122.441;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:13:5,5,0,3:5:194:5,0,3:187,0,112:-13.8829,0,-14.5171,-15.3881,-16.0222,-31.3495,-9.47096,-10.1103,-25.4168,-24.5137 0|0:37:34,0,3,0:34:1296:0,3,0:0,120,0:0,-10.235,-116.65,-3.90546,-110.589,-109.686,-10.235,-116.65,-110.589,-116.65 0|0:8:8,0,0,0:8:297:0,0,0:0,0,0:0,-2.40824,-27.079,-2.40824,-27.079,-27.079,-2.40824,-27.079,-27.079,-27.079 0|0:8:8,0,0,0:8:309:0,0,0:0,0,0:0,-2.40824,-28.1721,-2.40824,-28.1721,-28.1721,-2.40824,-28.1721,-28.1721,-28.1721 dDocent_Contig_15966 115 . T G 165.844 . AB=0.333333;ABP=3.73412;AC=3;AF=0.375;AN=8;AO=5;CIGAR=1X;DP=18;DPB=18;DPRA=0.636364;EPP=13.8677;EPPR=31.2394;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.6;PAIREDR=0.923077;PAO=0;PQA=0;PQR=0;PRO=0;QA=201;QR=517;RO=13;RPL=5;RPP=13.8677;RPPR=31.2394;RPR=0;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=31.2394;SRR=13;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5,0:5:204:0:0:0,-1.50515,-18.744 1/1:4:0,4:0:0:4:160:-14.7838,-1.20412,0 0/0:6:6,0:6:231:0:0:0,-1.80618,-21.1566 0/1:3:2,1:2:82:1:41:-3.19148,0,-6.87659 dDocent_Contig_15967 1 . N G 183.442 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=6;CIGAR=1X;DP=6;DPB=6;DPRA=0;EPP=16.0391;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=188;QR=0;RO=0;RPL=0;RPP=16.0391;RPPR=0;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1:0,1:0:0:1:29:-2.89966,-0.30103,0 1/1:4:0,4:0:0:4:124:-11.467,-1.20412,0 1/1:1:0,1:0:0:1:35:-3.49863,-0.30103,0 ./.:.:.:.:.:.:.:. dDocent_Contig_15968 110 . G A 487.423 . AB=0.510638;ABP=3.0565;AC=5;AF=0.625;AN=8;AO=43;CIGAR=2X;DP=68;DPB=68;DPRA=0;EPP=96.3836;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1.25;MQM=18.7442;MQMR=58.7917;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.958333;PAO=0;PQA=0;PQR=0;PRO=0;QA=1452;QR=831;RO=24;RPL=0;RPP=96.3836;RPPR=55.1256;RPR=43;RUN=1;SAF=0;SAP=96.3836;SAR=43;SRF=0;SRP=55.1256;SRR=24;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:19:10,9:10:344:9:307:-10.0005,0,-25.5733 1|1:21:1,19:1:35:19:631:-26.9685,-2.79623,0 0|1:15:11,4:11:382:4:134:-2.8107,0,-29.7043 0|1:13:2,11:2:70:11:380:-14.3252,0,-2.73401 dDocent_Contig_15971 46 . A G 284.851 . AB=0.208333;ABP=56.2114;AC=4;AF=0.5;AN=8;AO=15;CIGAR=1X;DP=72;DPB=72;DPRA=0;EPP=35.5824;EPPR=126.784;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.333333;PAIREDR=0.824561;PAO=0;PQA=0;PQR=0;PRO=0;QA=602;QR=2258;RO=57;RPL=0;RPP=35.5824;RPPR=126.784;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:33,3:33:1318:3:118:-0.165124,0,-108.049 0/1:17:14,3:14:554:3:123:-6.34728,0,-45.0837 0/1:14:7,7:7:268:7:281:-21.4478,0,-20.2652 0/1:5:3,2:3:118:2:80:-6.08642,0,-9.49705 dDocent_Contig_15972 8 . G A 1512.52 . AB=0.586957;ABP=9.05266;AC=4;AF=0.5;AN=8;AO=54;CIGAR=1X;DP=92;DPB=92;DPRA=0;EPP=120.27;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2055;QR=1461;RO=38;RPL=0;RPP=120.27;RPPR=85.5263;RPR=54;RUN=1;SAF=54;SAP=120.27;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:13,17:13:501:17:636:-48.5372,0,-36.4074 0/1:45:18,27:18:696:27:1030:-79.4617,0,-49.4279 0/1:15:6,9:6:225:9:350:-27.3459,0,-16.0943 0/1:2:1,1:1:39:1:39:-3.2945,0,-3.2945 dDocent_Contig_15973 29 . A T 51.5651 . AB=0.272727;ABP=7.94546;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=26;DPB=26;DPRA=2.2;EPP=9.52472;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=109;QR=897;RO=23;RPL=0;RPP=9.52472;RPPR=52.9542;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:3:3,0:3:118:0:0:0,-0.90309,-11.0016 0/0:7:7,0:7:280:0:0:0,-2.10721,-25.5718 0/1:11:8,3:8:296:3:109:-6.8553,0,-23.6762 0/0:5:5,0:5:203:0:0:0,-1.50515,-18.6531 dDocent_Contig_15975 20 . A G 1041.6 . AB=0.681818;ABP=9.32731;AC=4;AF=0.5;AN=8;AO=31;CIGAR=1X;DP=44;DPB=44;DPRA=2.11111;EPP=70.3259;EPPR=31.2394;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.387097;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1256;QR=517;RO=13;RPL=0;RPP=70.3259;RPPR=31.2394;RPR=31;RUN=1;SAF=31;SAP=70.3259;SAR=0;SRF=13;SRP=31.2394;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:16:0,16:0:0:16:645:-58.3838,-4.81648,0 0/1:6:1,5:1:40:5:202:-16.7553,0,-2.1895 0/1:16:6,10:6:243:10:409:-32.3541,0,-17.4315 0/0:6:6,0:6:234:0:0:0,-1.80618,-21.4264 dDocent_Contig_15976 98 . N G 554.908 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=18;CIGAR=1X;DP=18;DPB=18;DPRA=0;EPP=42.0968;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=17.0818;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=613;QR=0;RO=0;RPL=18;RPP=42.0968;RPPR=0;RPR=0;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:18:0,18:0:0:18:613:-55.4908,-5.41854,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_15977 16 . G A 633.432 . AB=0.208955;ABP=52.306;AC=2;AF=0.25;AN=8;AO=14;CIGAR=1X1M1X;DP=67;DPB=67;DPRA=0;EPP=33.4109;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1.75;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=541;QR=1425;RO=36;RPL=0;RPP=33.4109;RPPR=81.1833;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:19:6,2,11:6:240:2,11:79,440:-34.4406,-29.7466,-48.9148,0,-13.2743,-16.4627 0|1:19:13,6,0:13:513:6,0:229,0:-15.2521,0,-40.7982,-19.1655,-42.6044,-61.3845 0|1:18:14,3,1:14:552:3,1:113,41:-5.01824,0,-44.4972,-5.84029,-42.0152,-50.9686 0|0:11:3,3,5:3:120:3,5:120,204:-15.9333,-6.95428,-15.9335,0,-0.000211603,-8.3801 dDocent_Contig_15978 12 . G C 993.924 . AB=0.260163;ABP=64.4647;AC=5;AF=0.625;AN=8;AO=32;CIGAR=1X3M;DP=123;DPB=123;DPRA=0;EPP=72.4974;EPPR=135.47;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.90625;PAIREDR=0.836066;PAO=0;PQA=0;PQR=0;PRO=0;QA=1298;QR=2364;RO=61;RPL=0;RPP=72.4974;RPPR=135.47;RPR=32;RUN=1;SAF=32;SAP=72.4974;SAR=0;SRF=61;SRP=135.47;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:26:8,9,9:8:309:9,9:366,367:-32.7051,-4.92415,-27.5808,-4.83405,0,-27.4912 0|1:48:28,12,8:28:1098:12,8:480,320:-31.1103,0,-86.6739,-13.1795,-63.925,-101.058 0|1:25:9,8,8:9:359:8,8:325,325:-24.0962,-0.000371799,-27.1544,0,-2.75377,-27.154 0|1:24:16,1,7:16:598:1,7:41,286:-18.7818,-20.2141,-68.844,0,-45.535,-46.814 dDocent_Contig_15979 35 . G A 656.11 . AB=0.391304;ABP=5.3706;AC=3;AF=0.5;AN=6;AO=21;CIGAR=1X;DP=42;DPB=42;DPRA=2.5;EPP=48.6112;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=815;QR=819;RO=21;RPL=0;RPP=48.6112;RPPR=48.6112;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:12:0,12:0:0:12:467:-42.3797,-3.61236,0 0/1:23:14,9:14:554:9:348:-24.7542,0,-43.2798 0/0:7:7,0:7:265:0:0:0,-2.10721,-24.2059 dDocent_Contig_15980 12 . A G 52.5806 . AB=0.153846;ABP=30.0702;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=133;DPB=133;DPRA=0.641975;EPP=13.8677;EPPR=280.959;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.8;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=200;QR=4997;RO=128;RPL=0;RPP=13.8677;RPPR=280.959;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=128;SRP=280.959;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:71:71,0:71:2768:0:0:0,-21.3731,-249.249 0/1:26:22,4:22:871:4:160:-6.95702,0,-70.8747 0/0:26:25,1:25:962:1:40:0,-3.8311,-82.8685 0/0:10:10,0:10:396:0:0:0,-3.0103,-35.9988 dDocent_Contig_15981 8 . G A 2079.52 . AB=0.67619;ABP=31.3222;AC=4;AF=0.5;AN=8;AO=71;CIGAR=1X;DP=105;DPB=105;DPRA=0;EPP=157.185;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.873239;PAIREDR=0.794118;PAO=0;PQA=0;PQR=0;PRO=0;QA=2720;QR=1298;RO=34;RPL=0;RPP=157.185;RPPR=76.8404;RPR=71;RUN=1;SAF=71;SAP=157.185;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:47:15,32:15:574:32:1235:-97.2954,0,-37.8524 0/1:25:5,20:5:193:20:748:-60.1105,0,-10.2156 0/1:24:13,11:13:492:11:426:-31.47,0,-37.3995 0/1:9:1,8:1:39:8:311:-25.645,0,-1.18729 dDocent_Contig_15982 107 . N A 417.482 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=14;CIGAR=1X3M1D6M;DP=14;DPB=12.7273;DPRA=0;EPP=33.4109;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=448;QR=0;RO=0;RPL=0;RPP=33.4109;RPPR=0;RPR=14;RUN=1;SAF=0;SAP=33.4109;SAR=14;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. 1|1:5:0,5:0:0:5:164:-15.084,-1.50515,0 1|1:4:0,4:0:0:4:132:-12.2067,-1.20412,0 1|1:5:0,5:0:0:5:152:-13.9803,-1.50515,0 dDocent_Contig_15983 111 . C G 138.174 . AB=0.289474;ABP=17.6392;AC=4;AF=0.5;AN=8;AO=11;CIGAR=1X;DP=38;DPB=38;DPRA=0;EPP=26.8965;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=39.7273;MQMR=46.963;NS=4;NUMALT=1;ODDS=0;PAIRED=0.909091;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=392;QR=913;RO=27;RPL=0;RPP=26.8965;RPPR=61.6401;RPR=11;RUN=1;SAF=0;SAP=26.8965;SAR=11;SRF=0;SRP=61.6401;SRR=27;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:9,2:9:307:2:72:-3.46561,0,-24.4612 0/1:10:5,5:5:159:5:176:-7.86229,0,-11.5364 0/1:7:4,3:4:138:3:108:-7.87986,0,-10.5684 0/1:10:9,1:9:309:1:36:-0.556513,0,-24.9515 dDocent_Contig_15984 14 . T A 212.689 . AB=0.322581;ABP=11.486;AC=3;AF=0.375;AN=8;AO=10;CIGAR=1X;DP=32;DPB=32;DPRA=10.3333;EPP=24.725;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=54.1;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.4;PAIREDR=0.727273;PAO=0;PQA=0;PQR=0;PRO=0;QA=403;QR=893;RO=22;RPL=0;RPP=24.725;RPPR=50.7827;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:1:1,0:1:41:0:0:0,-0.30103,-4.09457 0/1:14:11,3:11:447:3:120:-5.16939,0,-36.3711 0/1:8:7,1:7:282:1:41:-1.68633,0,-23.3444 0/1:9:3,6:3:123:6:242:-19.4472,0,-8.75552 dDocent_Contig_15985 20 . G C 35.1184 . AB=0.166667;ABP=20.3821;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=98;DPB=98;DPRA=0.675;EPP=9.52472;EPPR=209.3;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=0.905263;PAO=0;PQA=0;PQR=0;PRO=0;QA=114;QR=3788;RO=95;RPL=0;RPP=9.52472;RPPR=209.3;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=95;SRP=209.3;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:46:46,0:46:1829:0:0:0,-13.8474,-164.82 0/1:18:15,3:15:605:3:114:-5.21068,0,-49.3693 0/0:23:23,0:23:914:0:0:0,-6.92369,-82.5628 0/0:11:11,0:11:440:0:0:0,-3.31133,-39.9549 dDocent_Contig_15986 159 . T A 176.727 . AB=0.307692;ABP=11.3621;AC=3;AF=0.375;AN=8;AO=8;CIGAR=1X;DP=28;DPB=28;DPRA=4.33333;EPP=20.3821;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=319;QR=790;RO=20;RPL=8;RPP=20.3821;RPPR=46.4397;RPR=0;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=46.4397;SRR=20;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:9,1:9:357:1:40:-0.985379,0,-29.4823 0/1:8:4,4:4:154:4:162:-12.5585,0,-11.8221 0/1:8:5,3:5:201:3:117:-8.50146,0,-16.0629 0/0:2:2,0:2:78:0:0:0,-0.60206,-7.4033 dDocent_Contig_15987 8 . G A 495.464 . AB=0.301887;ABP=21.0786;AC=4;AF=0.666667;AN=6;AO=20;CIGAR=1X6M;DP=57;DPB=57;DPRA=0;EPP=46.4397;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=746;QR=1297;RO=33;RPL=0;RPP=46.4397;RPPR=74.6689;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:31:26,0,5:26:1024:0,5:0,185:-7.67661,-15.5034,-99.766,0,-84.6362,-83.1311 0|1:22:7,4,11:7:273:4,11:159,411:-31.5269,-20.5367,-41.7793,0,-9.3418,-19.1243 1|1:4:0,0,4:0:0:0,4:0,150:-13.8655,-13.8655,-13.8655,-1.20412,-1.20412,0 .:.:.:.:.:.:.:. dDocent_Contig_15988 106 . N C 243.264 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=7;CIGAR=2X;DP=7;DPB=7;DPRA=0;EPP=18.2106;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=253;QR=0;RO=0;RPL=0;RPP=18.2106;RPPR=0;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:5:0,5:0:0:5:180:-16.5516,-1.50515,0 .:.:.:.:.:.:.:. 1|1:1:0,1:0:0:1:36:-3.59827,-0.30103,0 1|1:1:0,1:0:0:1:37:-3.69783,-0.30103,0 dDocent_Contig_15991 16 . A T 261.397 . AB=0.322581;ABP=11.486;AC=1;AF=0.125;AN=8;AO=10;CIGAR=1X;DP=106;DPB=106;DPRA=1.24;EPP=24.725;EPPR=211.472;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=409;QR=3837;RO=96;RPL=0;RPP=24.725;RPPR=211.472;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=96;SRP=211.472;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:57:57,0:57:2274:0:0:0,-17.1587,-204.822 0/1:31:21,10:21:845:10:409:-27.8386,0,-67.0308 0/0:14:14,0:14:554:0:0:0,-4.21442,-50.2021 0/0:4:4,0:4:164:0:0:0,-1.20412,-15.1499 dDocent_Contig_15993 14 . T A 341.821 . AB=0.132075;ABP=65.3275;AC=2;AF=0.25;AN=8;AO=7;CIGAR=1X2M1X3M1X;DP=72;DPB=72;DPRA=0;EPP=10.7656;EPPR=113.755;GTI=0;LEN=1;MEANALT=1.5;MQM=45.1429;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.714286;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=267;QR=2010;RO=51;RPL=0;RPP=18.2106;RPPR=113.755;RPR=7;RUN=1;SAF=6;SAP=10.7656;SAR=1;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:44:36,5,3:36:1418:5,3:197,123:-4.86682,0,-115.138,-5.54166,-106.489,-121.306 0|0:13:3,0,10:3:116:0,10:0,402:-32.6254,-33.5285,-43.0531,0,-9.91445,-6.90415 0|0:6:5,0,1:5:198:0,1:0,37:-1.89165,-3.3968,-19.7153,0,-16.6926,-16.3916 0|1:9:7,2,0:7:278:2,0:70,0:-1.06465,0,-22.6816,-3.17186,-23.2837,-26.2129 dDocent_Contig_15994 7 . A T 742.893 . AB=0.279661;ABP=52.7701;AC=3;AF=0.375;AN=8;AO=34;CIGAR=1X;DP=142;DPB=142;DPRA=0;EPP=76.8404;EPPR=235.358;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1300;QR=4052;RO=107;RPL=0;RPP=76.8404;RPPR=235.358;RPR=34;RUN=1;SAF=34;SAP=76.8404;SAR=0;SRF=107;SRP=235.358;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:52:40,12:40:1495:12:455:-25.6435,0,-119.164 0/1:46:26,19:26:995:19:729:-52.0232,0,-75.9452 0/0:24:23,1:23:884:1:39:0,-3.32816,-75.9841 0/1:20:18,2:18:678:2:77:-1.28854,0,-55.3284 dDocent_Contig_15995 8 . G A 122.105 . AB=0.259259;ABP=16.6021;AC=3;AF=0.375;AN=8;AO=7;CIGAR=2X2M1X;DP=29;DPB=29;DPRA=4.5;EPP=18.2106;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1.66667;MQM=50.5714;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=266;QR=731;RO=19;RPL=0;RPP=18.2106;RPPR=44.2683;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:7:6,1,0:6:229:1,0:39,0:-1.78596,0,-18.8685,-3.59214,-19.1696,-22.3735 0|1:15:9,3,2:9:346:3,2:111,49:-6.32592,0,-27.5962,-5.26442,-24.7161,-33.0941 0|1:5:2,3,0:2:78:3,0:116,0:-9.22033,0,-5.89832,-9.82239,-6.80141,-16.2368 0|0:2:2,0,0:2:78:0,0:0,0:0,-0.60206,-7.40347,-0.60206,-7.40347,-7.40347 dDocent_Contig_15996 107 . N T 187.851 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=6;CIGAR=1X;DP=6;DPB=6;DPRA=0;EPP=16.0391;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=8.76405;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=205;QR=0;RO=0;RPL=0;RPP=16.0391;RPPR=0;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:6:0,6:0:0:6:205:-18.785,-1.80618,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_15997 29 . A T 116.976 . AB=0;ABP=0;AC=2;AF=0.25;AN=8;AO=3;CIGAR=1X;DP=37;DPB=37;DPRA=0.264706;EPP=9.52472;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.970588;PAO=0;PQA=0;PQR=0;PRO=0;QA=119;QR=1362;RO=34;RPL=0;RPP=9.52472;RPPR=76.8404;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:119:-11.0954,-0.90309,0 0/0:16:16,0:16:644:0:0:0,-4.81648,-58.2939 0/0:5:5,0:5:203:0:0:0,-1.50515,-18.6531 0/0:13:13,0:13:515:0:0:0,-3.91339,-46.6972 dDocent_Contig_15998 14 . G C 124.385 . AB=0.333333;ABP=6.62942;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=155;DPB=155;DPRA=0.321429;EPP=13.8677;EPPR=328.731;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.9933;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=203;QR=5985;RO=150;RPL=0;RPP=13.8677;RPPR=328.731;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=150;SRP=328.731;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:74:74,0:74:2971:0:0:0,-22.2762,-267.475 0/0:62:62,0:62:2452:0:0:0,-18.6639,-220.823 0/0:4:4,0:4:164:0:0:0,-1.20412,-15.1499 0/1:15:10,5:10:398:5:203:-14.1374,0,-31.6635 dDocent_Contig_15999 13 . A T 65.9115 . AB=0.113924;ABP=105.289;AC=3;AF=0.375;AN=8;AO=9;CIGAR=1X3M;DP=105;DPB=105;DPRA=1.01282;EPP=22.5536;EPPR=202.786;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=312;QR=3630;RO=92;RPL=0;RPP=22.5536;RPPR=202.786;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=92;SRP=202.786;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:23:20,2,1:20:797:2,1:76,39:-0.20526,0,-65.0368,-3.01666,-62.4334,-68.3632 0|0:26:26,0,0:26:1028:0,0:0,0:0,-7.82678,-92.8203,-7.82678,-92.8203,-92.8203 0|1:31:26,2,3:26:1016:2,3:78,101:-0.32316,-1.71691,-84.6809,0,-77.1067,-82.6153 0|1:25:20,0,5:20:789:0,5:0,172:-8.28607,-14.3067,-79.2634,0,-65.3105,-63.8054 dDocent_Contig_16000 7 . A G 121.845 . AB=0.230769;ABP=27.5646;AC=3;AF=0.375;AN=8;AO=9;CIGAR=1X;DP=40;DPB=40;DPRA=13;EPP=22.5536;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.933333;PAO=0;PQA=0;PQR=0;PRO=0;QA=313;QR=1162;RO=30;RPL=0;RPP=22.5536;RPPR=68.1545;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:1:1,0:1:39:0:0:0,-0.30103,-3.89656 0/1:17:14,3:14:540:3:108:-4.95742,0,-43.8281 0/1:9:5,4:5:195:4:129:-9.21768,0,-15.2149 0/1:13:10,2:10:388:2:76:-3.40241,0,-31.5304 dDocent_Contig_16001 107 . N C 32.2096 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=17;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=72;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:72:-3.21962,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_16002 22 . T A 1518.79 . AB=0.374194;ABP=24.3187;AC=3;AF=0.375;AN=8;AO=61;CIGAR=1X;DP=189;DPB=189;DPRA=0;EPP=135.47;EPPR=278.787;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.918033;PAIREDR=0.80315;PAO=0;PQA=0;PQR=0;PRO=0;QA=2361;QR=4665;RO=127;RPL=0;RPP=135.47;RPPR=278.787;RPR=61;RUN=1;SAF=61;SAP=135.47;SAR=0;SRF=127;SRP=278.787;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:54:43,11:43:1594:11:427:-22.5265,0,-127.47 0/1:59:24,34:24:885:34:1312:-100.785,0,-62.3948 0/1:42:29,13:29:1074:13:514:-33.9645,0,-84.3216 0/0:34:31,3:31:1112:3:108:0,-0.160894,-90.3048 dDocent_Contig_16004 9 . A G 45.0051 . AB=0.5;ABP=3.0103;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X;DP=22;DPB=22;DPRA=0.666667;EPP=3.0103;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=78;QR=753;RO=20;RPL=0;RPP=7.35324;RPPR=46.4397;RPR=2;RUN=1;SAF=1;SAP=3.0103;SAR=1;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:2:2,0:2:78:0:0:0,-0.60206,-7.40347 0/0:8:8,0:8:293:0:0:0,-2.40824,-26.7207 0/0:8:8,0:8:304:0:0:0,-2.40824,-27.7192 0/1:4:2,2:2:78:2:78:-6.19918,0,-6.19935 dDocent_Contig_16005 24 . A G 562.245 . AB=0.488372;ABP=3.0608;AC=4;AF=0.5;AN=8;AO=21;CIGAR=1X;DP=43;DPB=43;DPRA=0;EPP=48.6112;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.952381;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=834;QR=885;RO=22;RPL=0;RPP=48.6112;RPPR=50.7827;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:3,6:3:122:6:229:-18.2611,0,-8.66322 0/1:5:2,3:2:81:3:121:-9.77505,0,-6.18058 0/1:12:9,3:9:356:3:122:-7.76013,0,-28.7864 0/1:17:8,9:8:326:9:362:-27.8262,0,-24.5924 dDocent_Contig_16006 121 . C A 127.994 . AB=0.25;ABP=7.35324;AC=5;AF=0.625;AN=8;AO=5;CIGAR=1X2M1X;DP=20;DPB=20;DPRA=0.407407;EPP=13.8677;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=173;QR=512;RO=15;RPL=0;RPP=13.8677;RPPR=35.5824;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=35.5824;SRR=15;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:9:9,0:9:309:0:0:0,-2.70927,-28.1435 1|1:2:0,2:0:0:2:69:-6.55266,-0.60206,0 0|1:8:6,2:6:203:2:69:-4.14442,0,-16.1942 1|1:1:0,1:0:0:1:35:-3.49863,-0.30103,0 dDocent_Contig_16008 10 . G T 6076.9 . AB=0.5;ABP=3.0103;AC=7;AF=0.875;AN=8;AO=211;CIGAR=2M1X3M;DP=273;DPB=273;DPRA=0;EPP=461.191;EPPR=50.7827;GTI=0;LEN=1;MEANALT=4.25;MQM=41.2322;MQMR=60;NS=4;NUMALT=4;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7553;QR=859;RO=22;RPL=0;RPP=461.191;RPPR=50.7827;RPR=211;RUN=1;SAF=211;SAP=461.191;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:71:0,1,5,1,60:0:0:1,5,1,60:39,195,40,2023:-169.419,-166.212,-165.911,-153.417,-150.21,-151.912,-168.733,-165.526,-152.732,-168.432,-18.0618,-14.8535,-2.04561,-17.3988,0 1|1:81:5,0,2,0,67:5:196:0,2,0,67:0,36,0,2418:-189.264,-190.769,-206.891,-188.671,-204.793,-204.191,-190.769,-206.891,-204.793,-206.891,-4.01403,-20.169,-18.096,-20.169,0 0|1:72:17,9,0,9,36:17:663:9,0,9,36:310,0,357,1358:-101.103,-83.1595,-134.961,-106.22,-137.671,-160.73,-89.8714,-121.322,-144.378,-141.669,0,-31.4899,-54.5493,-38.2133,-43.7122 1|1:49:0,0,0,0,48:0:0:0,0,0,48:0,0,0,1754:-149.303,-149.303,-149.303,-149.303,-149.303,-149.303,-149.303,-149.303,-149.303,-149.303,-14.4494,-14.4494,-14.4494,-14.4494,0 dDocent_Contig_16009 30 . T C 335.053 . AB=0.21875;ABP=24.9965;AC=6;AF=0.75;AN=8;AO=13;CIGAR=1X;DP=38;DPB=38;DPRA=0;EPP=31.2394;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.615385;PAIREDR=0.8;PAO=0;PQA=0;PQR=0;PRO=0;QA=502;QR=1017;RO=25;RPL=0;RPP=31.2394;RPPR=57.2971;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:13,2:13:529:2:82:-3.26423,0,-43.4408 1/1:5:0,5:0:0:5:198:-18.1958,-1.50515,0 0/1:17:12,5:12:488:5:203:-13.5355,0,-39.154 1/1:1:0,1:0:0:1:19:-1.89997,-0.30103,0 dDocent_Contig_16011 131 . T A 101.194 . AB=0.8;ABP=6.91895;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=23;DPB=23;DPRA=0.833333;EPP=11.6962;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.789474;PAO=0;PQA=0;PQR=0;PRO=0;QA=143;QR=652;RO=19;RPL=0;RPP=11.6962;RPPR=44.2683;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=44.2683;SRR=19;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:7:7,0:7:251:0:0:0,-2.10721,-22.9367 0/1:5:1,4:1:35:4:143:-11.7161,0,-1.99348 0/0:5:5,0:5:162:0:0:0,-1.50515,-14.8975 0/0:6:6,0:6:204:0:0:0,-1.80618,-18.6932 dDocent_Contig_16012 17 . T C 850.75 . AB=0.307692;ABP=28.0658;AC=3;AF=0.375;AN=8;AO=24;CIGAR=2M1X4M;DP=78;DPB=63;DPRA=0;EPP=55.1256;EPPR=74.6689;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=1.38778e-17;PAIRED=0.916667;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=977;QR=1297;RO=33;RPL=0;RPP=55.1256;RPPR=74.6689;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:17:6,4,7:6:239:4,7:160,285:-21.7089,-10.3375,-28.8107,0,-6.49952,-17.5731 0|0:33:18,11,4:18:706:11,4:441,161:-29.5206,0,-54.7376,-21.6663,-44.7783,-78.5227 0|1:14:3,3,8:3:118:3,8:118,327:-26.0923,-17.3179,-26.1173,0,-0.0256272,-7.29889 0|1:14:6,3,5:6:234:3,5:106,204:-15.0592,-8.25687,-26.5785,0,-10.642,-17.7537 dDocent_Contig_16013 8 . G A 59.0012 . AB=0.272727;ABP=7.94546;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=45;DPB=45;DPRA=0.970588;EPP=9.52472;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=117;QR=1615;RO=42;RPL=0;RPP=9.52472;RPPR=94.2121;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:11,0:11:419:0:0:0,-3.31133,-38.0613 0/1:11:8,3:8:310:3:117:-7.59905,0,-24.9522 0/0:18:18,0:18:694:0:0:0,-5.41854,-62.7938 0/0:5:5,0:5:192:0:0:0,-1.50515,-17.65 dDocent_Contig_16015 10 . G T 162.083 . AB=0.5;ABP=3.0103;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=50;DPB=50;DPRA=0.947368;EPP=16.0391;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.863636;PAO=0;PQA=0;PQR=0;PRO=0;QA=235;QR=1763;RO=44;RPL=0;RPP=16.0391;RPPR=98.5551;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:18:18,0:18:718:0:0:0,-5.41854,-64.9405 0/0:4:4,0:4:156:0:0:0,-1.20412,-14.4141 0/1:12:6,6:6:242:6:235:-17.9072,0,-18.545 0/0:16:16,0:16:647:0:0:0,-4.81648,-58.5613 dDocent_Contig_16016 58 . A G 243.988 . AB=0.254545;ABP=31.7922;AC=3;AF=0.375;AN=8;AO=15;CIGAR=1X;DP=67;DPB=67;DPRA=0;EPP=35.5824;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.961538;PAO=0;PQA=0;PQR=0;PRO=0;QA=518;QR=1672;RO=52;RPL=15;RPP=35.5824;RPPR=115.927;RPR=0;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:18,11:18:559:11:378:-25.621,0,-41.8737 0/0:12:11,1:11:345:1:33:0,-0.313225,-28.0534 0/1:21:19,2:19:644:2:71:-0.420429,0,-51.9576 0/1:5:4,1:4:124:1:36:-2.09312,0,-9.96127 dDocent_Contig_16017 7 . A C 325.755 . AB=0.225;ABP=55.5599;AC=4;AF=0.5;AN=8;AO=18;CIGAR=1X;DP=80;DPB=80;DPRA=0;EPP=42.0968;EPPR=135.47;GTI=0;LEN=1;MEANALT=1.25;MQM=54.5;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=697;QR=2318;RO=61;RPL=0;RPP=42.0968;RPPR=135.47;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=61;SRP=135.47;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:18,6:18:684:6:230:-13.4704,0,-54.3633 0/1:26:23,3:23:886:3:117:-3.0836,0,-72.233 0/1:16:12,4:12:443:4:156:-9.5508,0,-35.3919 0/1:13:8,5:8:305:5:194:-13.8598,0,-23.8958 dDocent_Contig_16018 13 . A G 579 . AB=0.655172;ABP=9.07545;AC=2;AF=0.25;AN=8;AO=19;CIGAR=1X;DP=72;DPB=72;DPRA=0.674419;EPP=44.2683;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=770;QR=2135;RO=53;RPL=0;RPP=44.2683;RPPR=118.098;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:17:17,0:17:684:0:0:0,-5.11751,-61.8904 0/0:26:26,0:26:1043:0:0:0,-7.82678,-94.1602 0/1:18:3,15:3:123:15:606:-49.4594,0,-6.04625 0/1:11:7,4:7:285:4:164:-11.8386,0,-22.7131 dDocent_Contig_16019 60 . G C 125.451 . AB=0.416667;ABP=3.73412;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=82;DPB=82;DPRA=0.906977;EPP=18.2106;EPPR=165.871;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.28;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=272;QR=2909;RO=75;RPL=7;RPP=18.2106;RPPR=165.871;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=75;SRP=165.871;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:7,5:7:275:5:191:-13.9427,0,-21.5031 0/0:22:22,0:22:831:0:0:0,-6.62266,-75.093 0/0:27:25,2:25:966:2:81:0,-0.442076,-79.5568 0/0:21:21,0:21:837:0:0:0,-6.32163,-74.2416 dDocent_Contig_16021 8 . G A 589.383 . AB=0.269231;ABP=51.1168;AC=3;AF=0.375;AN=8;AO=29;CIGAR=1X;DP=117;DPB=117;DPRA=0;EPP=65.983;EPPR=194.1;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.724138;PAIREDR=0.727273;PAO=0;PQA=0;PQR=0;PRO=0;QA=1089;QR=3377;RO=88;RPL=0;RPP=65.983;RPPR=194.1;RPR=29;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=88;SRP=194.1;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:27,9:27:1038:9:327:-18.9336,0,-82.891 0/1:38:29,9:29:1118:9:348:-20.2411,0,-89.4823 0/1:30:20,10:20:760:10:376:-25.1606,0,-59.6964 0/0:13:12,1:12:461:1:38:0,-0.116121,-38.0437 dDocent_Contig_16022 49 . C T 1266.15 . AB=0.319277;ABP=50.1025;AC=4;AF=0.5;AN=8;AO=53;CIGAR=1X;DP=166;DPB=166;DPRA=0;EPP=109.576;EPPR=191.352;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.7699;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2029;QR=4479;RO=113;RPL=1;RPP=109.576;RPPR=191.352;RPR=52;RUN=1;SAF=53;SAP=118.098;SAR=0;SRF=113;SRP=248.387;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:59:41,18:41:1630:18:677:-43.4871,0,-129.168 0/1:76:50,26:50:1982:26:991:-66.6046,0,-155.696 0/1:20:15,5:15:604:5:202:-12.5413,0,-48.1197 0/1:11:7,4:7:263:4:159:-11.3801,0,-20.7103 dDocent_Contig_16024 130 . G A 414.988 . AB=0.222222;ABP=9.04217;AC=3;AF=0.375;AN=8;AO=15;CIGAR=1X;DP=40;DPB=40;DPRA=1.35294;EPP=35.5824;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=540;QR=879;RO=25;RPL=0;RPP=35.5824;RPPR=57.2971;RPR=15;RUN=1;SAF=0;SAP=35.5824;SAR=15;SRF=0;SRP=57.2971;SRR=25;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:7,2:7:245:2:74:-4.31661,0,-19.6801 1/1:14:1,13:1:37:13:466:-38.5792,-0.516591,0 0/0:10:10,0:10:362:0:0:0,-3.0103,-32.9245 0/0:7:7,0:7:235:0:0:0,-2.10721,-21.4763 dDocent_Contig_16025 118 . A C 106.119 . AB=0.214286;ABP=12.937;AC=3;AF=0.5;AN=6;AO=5;CIGAR=2I3M2X;DP=27;DPB=29;DPRA=0.727273;EPP=13.8677;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=174;QR=711;RO=21;RPL=5;RPP=13.8677;RPPR=48.6112;RPR=0;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=48.6112;SRR=21;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:2:0,2:0:0:2:69:-6.55266,-0.60206,0 .:.:.:.:.:.:.:. 0|0:11:10,0:10:324:0:0:0,-3.0103,-29.3798 0|1:14:11,3:11:387:3:105:-5.58174,0,-30.953 dDocent_Contig_16027 18 . G A 167.166 . AB=0.172414;ABP=30.0414;AC=0;AF=0;AN=8;AO=5;CIGAR=2X1M1X;DP=59;DPB=59;DPRA=0;EPP=13.8677;EPPR=96.3836;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=186;QR=1675;RO=43;RPL=0;RPP=13.8677;RPPR=96.3836;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:19:17,2,0:17:664:2,0:75,0:-1.40077,0,-54.3762,-6.51828,-54.9783,-61.1202 0|0:29:18,6,5:18:706:6,5:233,186:-13.7358,0,-56.2709,-3.93822,-42.8579,-60.4973 0|0:7:6,1,0:6:230:1,0:39,0:-1.78935,0,-18.9597,-3.59553,-19.2607,-22.4675 0|0:4:2,2,0:2:75:2,0:79,0:-6.29351,0,-5.91547,-6.89557,-6.51753,-13.0284 dDocent_Contig_16028 180 . G A 102.402 . AB=0.111111;ABP=14.8328;AC=3;AF=0.375;AN=8;AO=4;CIGAR=1X;DP=38;DPB=38;DPRA=0.461538;EPP=11.6962;EPPR=68.4099;GTI=0;LEN=1;MEANALT=1;MQM=40;MQMR=49.8235;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.911765;PAO=0;PQA=0;PQR=0;PRO=0;QA=154;QR=1283;RO=34;RPL=4;RPP=11.6962;RPPR=76.8404;RPR=0;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=1;SRP=68.4099;SRR=33;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:8,1:8:294:1:41:-1.03685,0,-17.3373 0/0:22:22,0:22:833:0:0:0,-6.62266,-70.7467 1/1:3:0,3:0:0:3:113:-9.92732,-0.90309,0 0/0:4:4,0:4:156:0:0:0,-1.20412,-14.4159 dDocent_Contig_16029 82 . A T 234.493 . AB=0.409091;ABP=4.58955;AC=1;AF=0.125;AN=8;AO=10;CIGAR=1X;DP=71;DPB=71;DPRA=1.44828;EPP=24.725;EPPR=135.47;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.95082;PAO=0;PQA=0;PQR=0;PRO=0;QA=388;QR=2240;RO=61;RPL=10;RPP=24.725;RPPR=135.47;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=61;SRP=135.47;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:7:7,0:7:263:0:0:0,-2.10721,-24.0292 0/1:22:13,9:13:483:9:349:-25.1482,0,-37.187 0/0:20:19,1:19:716:1:39:0,-2.12404,-60.8715 0/0:22:22,0:22:778:0:0:0,-6.62266,-70.3363 dDocent_Contig_16030 124 . G T 41.8401 . AB=0.230769;ABP=11.1951;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=38;DPB=38;DPRA=2.16667;EPP=11.6962;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=137;QR=1157;RO=34;RPL=0;RPP=11.6962;RPPR=76.8404;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=76.8404;SRR=34;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:7:7,0:7:239:0:0:0,-2.10721,-21.8436 0/0:5:5,0:5:174:0:0:0,-1.50515,-16.002 0/0:13:12,1:12:399:1:32:0,-0.714077,-33.0306 0/1:13:10,3:10:345:3:105:-5.8827,0,-27.4703 dDocent_Contig_16031 8 . G A 93.9166 . AB=0.152174;ABP=51.3492;AC=1;AF=0.125;AN=8;AO=14;CIGAR=1X;DP=259;DPB=259;DPRA=0.556701;EPP=33.4109;EPPR=532.85;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.987705;PAO=0;PQA=0;PQR=0;PRO=0;QA=538;QR=9351;RO=244;RPL=0;RPP=33.4109;RPPR=532.85;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=244;SRP=532.85;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:97:97,0:97:3697:0:0:0,-29.1999,-332.843 0/0:64:60,4:60:2305:4:155:0,-4.94048,-193.338 0/0:52:48,3:48:1838:3:110:0,-5.47676,-155.402 0/1:46:39,7:39:1511:7:273:-11.0906,0,-122.415 dDocent_Contig_16032 16 . T C 621.46 . AB=0.337838;ABP=19.9126;AC=2;AF=0.25;AN=8;AO=30;CIGAR=1X;DP=151;DPB=151;DPRA=0;EPP=68.1545;EPPR=265.758;GTI=0;LEN=1;MEANALT=1;MQM=57.8;MQMR=55.4959;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.966942;PAO=0;PQA=0;PQR=0;PRO=0;QA=1172;QR=4851;RO=121;RPL=0;RPP=68.1545;RPPR=265.758;RPR=30;RUN=1;SAF=30;SAP=68.1545;SAR=0;SRF=121;SRP=265.758;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:52:38,14:38:1539:14:535:-32.7637,0,-119.861 0/0:38:36,2:36:1450:2:81:0,-3.75341,-121.475 0/0:39:36,3:36:1426:3:122:0,-0.694199,-111.865 0/1:22:11,11:11:436:11:434:-32.78,0,-32.4169 dDocent_Contig_16034 19 . G T 117.841 . AB=0.222222;ABP=21.1059;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=110;DPB=110;DPRA=0.975904;EPP=16.0391;EPPR=228.843;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.7885;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.980769;PAO=0;PQA=0;PQR=0;PRO=0;QA=236;QR=4130;RO=104;RPL=0;RPP=16.0391;RPPR=228.843;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=104;SRP=228.843;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:33:33,0:33:1315:0:0:0,-9.93399,-118.607 0/0:20:20,0:20:815:0:0:0,-6.0206,-73.5584 0/0:30:30,0:30:1180:0:0:0,-9.0309,-106.475 0/1:27:21,6:21:820:6:236:-13.483,0,-65.9864 dDocent_Contig_16035 73 . G T 289.567 . AB=0.227273;ABP=45.6501;AC=3;AF=0.375;AN=8;AO=16;CIGAR=1X;DP=93;DPB=93;DPRA=0;EPP=37.7539;EPPR=170.214;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=630;QR=2980;RO=77;RPL=16;RPP=37.7539;RPPR=170.214;RPR=0;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=77;SRP=170.214;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:27:26,1:26:1014:1:40:0,-4.13213,-87.5694 0/1:42:33,9:33:1275:9:356:-19.7597,0,-102.392 0/1:8:5,3:5:193:3:115:-8.31624,0,-15.3317 0/1:16:13,3:13:498:3:119:-6.2787,0,-40.3473 dDocent_Contig_16036 154 . A G 174.533 . AB=0.166667;ABP=14.5915;AC=3;AF=0.375;AN=8;AO=6;CIGAR=1X;DP=29;DPB=29;DPRA=1.23077;EPP=16.0391;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=241;QR=851;RO=23;RPL=0;RPP=16.0391;RPPR=52.9542;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=52.9542;SRR=23;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:7:7,0:7:262:0:0:0,-2.10721,-23.9382 0/0:6:6,0:6:227:0:0:0,-1.80618,-20.7927 0/1:12:10,2:10:362:2:78:-3.79094,0,-29.3072 1/1:4:0,4:0:0:4:163:-15.0584,-1.20412,0 dDocent_Contig_16037 39 . A T 767.635 . AB=0.4;ABP=9.95901;AC=5;AF=0.625;AN=8;AO=38;CIGAR=1X;DP=86;DPB=86;DPRA=0;EPP=85.5263;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=0.894737;PAIREDR=0.9375;PAO=0;PQA=0;PQR=0;PRO=0;QA=1167;QR=1784;RO=48;RPL=0;RPP=85.5263;RPPR=107.241;RPR=38;RUN=1;SAF=38;SAP=85.5263;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:35:21,14:21:784:14:405:-26.1961,0,-60.3433 0/1:28:15,13:15:533:13:416:-29.3214,0,-39.8564 0/1:17:12,5:12:467:5:169:-10.4247,0,-37.2616 1/1:6:0,6:0:0:6:177:-16.2192,-1.80618,0 dDocent_Contig_16038 38 . C T 76.453 . AB=0.266667;ABP=10.1038;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=64;DPB=64;DPRA=0.918367;EPP=11.6962;EPPR=133.299;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=150;QR=2413;RO=60;RPL=0;RPP=11.6962;RPPR=133.299;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:15:15,0:15:608:0:0:0,-4.51545,-55.0579 0/1:15:11,4:11:444:4:150:-9.34427,0,-35.7993 0/0:10:10,0:10:394:0:0:0,-3.0103,-35.8177 0/0:24:24,0:24:967:0:0:0,-7.22472,-87.3288 dDocent_Contig_16039 79 . G A 440.035 . AB=0.322034;ABP=19.2411;AC=3;AF=0.375;AN=8;AO=19;CIGAR=1X;DP=69;DPB=69;DPRA=1.96667;EPP=44.2683;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=734;QR=1877;RO=50;RPL=19;RPP=44.2683;RPPR=111.584;RPR=0;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:10:10,0:10:386:0:0:0,-3.0103,-35.0969 0/1:23:15,8:15:568:8:312:-21.5212,0,-44.533 0/1:25:19,6:19:703:6:228:-13.3587,0,-56.0659 0/1:11:6,5:6:220:5:194:-14.5215,0,-16.8406 dDocent_Contig_16040 98 . N G 1129.72 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=37;CIGAR=1X;DP=37;DPB=37;DPRA=0;EPP=83.3548;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=0.837838;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1234;QR=0;RO=0;RPL=37;RPP=83.3548;RPPR=0;RPR=0;RUN=1;SAF=37;SAP=83.3548;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:17:0,17:0:0:17:552:-49.9872,-5.11751,0 1/1:1:0,1:0:0:1:35:-3.49863,-0.30103,0 1/1:14:0,14:0:0:14:482:-43.7086,-4.21442,0 1/1:5:0,5:0:0:5:165:-15.1748,-1.50515,0 dDocent_Contig_16041 24 . A T 33.5223 . AB=0.142857;ABP=26.2761;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=51;DPB=51;DPRA=2.1;EPP=9.52472;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=1906;RO=48;RPL=0;RPP=9.52472;RPPR=107.241;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:20:20,0:20:783:0:0:0,-6.0206,-70.7875 0/0:7:7,0:7:279:0:0:0,-2.10721,-25.4811 0/1:21:18,3:18:724:3:122:-5.05086,0,-59.1643 0/0:3:3,0:3:120:0:0:0,-0.90309,-11.1873 dDocent_Contig_16042 32 . A G 226.745 . AB=0.244898;ABP=30.7077;AC=2;AF=0.25;AN=8;AO=12;CIGAR=1X;DP=65;DPB=65;DPRA=3.0625;EPP=29.068;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.981132;PAO=0;PQA=0;PQR=0;PRO=0;QA=446;QR=2102;RO=53;RPL=0;RPP=29.068;RPPR=118.098;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:33:25,8:25:991:8:312:-18.507,0,-79.5552 0/0:7:7,0:7:279:0:0:0,-2.10721,-25.4806 0/1:16:12,4:12:471:4:134:-7.56549,0,-37.9219 0/0:9:9,0:9:361:0:0:0,-2.70927,-32.8539 dDocent_Contig_16043 62 . T G 154.87 . AB=0.4;ABP=4.31318;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=46;DPB=46;DPRA=1.45161;EPP=16.0391;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.85;NS=4;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=0.975;PAO=0;PQA=0;PQR=0;PRO=0;QA=237;QR=1506;RO=40;RPL=6;RPP=16.0391;RPPR=89.8692;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:14:14,0:14:535:0:0:0,-4.21442,-48.4896 0/0:14:14,0:14:528:0:0:0,-4.21442,-47.8623 0/1:15:9,6:9:333:6:237:-17.1859,0,-25.8022 0/0:3:3,0:3:110:0:0:0,-0.90309,-10.2495 dDocent_Contig_16045 74 . A G 362.1 . AB=0.4;ABP=6.48466;AC=3;AF=0.375;AN=8;AO=16;CIGAR=1X;DP=57;DPB=57;DPRA=0.784314;EPP=37.7539;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.9375;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=572;QR=1439;RO=41;RPL=16;RPP=37.7539;RPPR=92.0407;RPR=0;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:17:17,0:17:592:0:0:0,-5.11751,-53.6022 0/1:17:10,7:10:344:7:254:-18.0934,0,-26.1694 0/1:14:6,8:6:209:8:282:-21.5062,0,-14.9362 0/1:9:8,1:8:294:1:36:-0.889005,0,-24.1031 dDocent_Contig_16046 172 . C A 53.3731 . AB=0.2;ABP=18.6449;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=32;DPB=32;DPRA=0;EPP=13.8677;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=34.4;MQMR=29.5556;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=203;QR=1070;RO=27;RPL=5;RPP=13.8677;RPPR=61.6401;RPR=0;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=61.6401;SRR=27;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:9,3:9:362:3:122:-6.83278,0,-15.6343 0/1:8:7,1:7:281:1:40:-1.29075,0,-18.4162 0/0:12:11,1:11:427:1:41:0,-2.41287,-25.9713 ./.:.:.:.:.:.:.:. dDocent_Contig_16048 45 . A T 728.141 . AB=0.148148;ABP=32.0437;AC=0;AF=0;AN=8;AO=4;CIGAR=1X2M1X;DP=72;DPB=72;DPRA=3;EPP=3.0103;EPPR=5.18177;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=0.722222;PAO=0;PQA=0;PQR=0;PRO=0;QA=150;QR=1338;RO=36;RPL=0;RPP=11.6962;RPPR=81.1833;RPR=4;RUN=1;SAF=2;SAP=3.0103;SAR=2;SRF=21;SRP=5.18177;SRR=15;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:15:4,0,2,9:4:159:0,2,9:0,80,347:-27.2761,-28.4802,-41.5735,-21.8875,-34.9819,-34.3798,0,-13.0891,-6.4981,-10.3798 0|0:21:17,0,0,4:17:630:0,0,4:0,0,158:-8.27773,-13.3952,-64.917,-13.3952,-64.917,-64.917,0,-51.9117,-51.9117,-50.7076 0|0:27:15,4,2,5:15:549:4,2,5:150,80,194:-11.4341,-3.6625,-47.3175,-9.35387,-41.9284,-53.6138,0,-32.5776,-38.272,-43.3605 0|0:9:0,0,0,9:0:0:0,0,9:0,0,343:-31.2241,-31.2241,-31.2241,-31.2241,-31.2241,-31.2241,-2.70927,-2.70927,-2.70927,0 dDocent_Contig_16050 43 . T C 755.603 . AB=0.5;ABP=3.0103;AC=3;AF=0.375;AN=8;AO=27;CIGAR=1X;DP=56;DPB=56;DPRA=9;EPP=61.6401;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.925926;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1064;QR=1140;RO=29;RPL=0;RPP=61.6401;RPPR=65.983;RPR=27;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:7,22:7:276:22:866:-69.5181,0,-16.4769 0/1:8:7,1:7:270:1:41:-1.68633,0,-22.2523 0/1:17:13,4:13:513:4:157:-9.39017,0,-41.3986 0/0:2:2,0:2:81:0:0:0,-0.60206,-7.68573 dDocent_Contig_16051 73 . T A 880.301 . AB=0.45;ABP=4.31318;AC=6;AF=0.75;AN=8;AO=33;CIGAR=2X;DP=66;DPB=66;DPRA=0;EPP=74.6689;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1201;QR=1185;RO=33;RPL=33;RPP=74.6689;RPPR=74.6689;RPR=0;RUN=1;SAF=33;SAP=74.6689;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:41:27,14:27:971:14:510:-33.8961,0,-75.3587 0|1:19:6,13:6:214:13:473:-37.1902,0,-13.8875 1|1:5:0,5:0:0:5:181:-16.6434,-1.50515,0 1|1:1:0,1:0:0:1:37:-3.69783,-0.30103,0 dDocent_Contig_16053 6 . C T 1082.39 . AB=0.05;ABP=73.366;AC=0;AF=0;AN=8;AO=2;CIGAR=2X;DP=285;DPB=285;DPRA=0;EPP=7.35324;EPPR=358.602;GTI=0;LEN=1;MEANALT=2;MQM=42;MQMR=59.8421;NS=4;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0.942584;PAO=0;PQA=0;PQR=0;PRO=0;QA=69;QR=8001;RO=209;RPL=0;RPP=7.35324;RPPR=456.848;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=197;SRP=358.602;SRR=12;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:106:81,0,22:81:3108:0,22:0,750:-31.3782,-55.7616,-310.873,0,-255.063,-248.441 0|0:113:99,0,12:99:3796:0,12:0,404:-2.69009,-32.4921,-344.063,0,-311.652,-308.04 0|0:40:19,2,19:19:725:2,19:69,655:-46.4835,-46.7238,-105.623,0,-54.0438,-53.7995 0|0:26:10,0,15:10:372:0,15:0,488:-35.0635,-38.0738,-68.5378,0,-30.4368,-25.9214 dDocent_Contig_16054 13 . A G 1242.84 . AB=0.131279;ABP=1037.47;AC=4;AF=0.5;AN=8;AO=115;CIGAR=1X;DP=876;DPB=876;DPRA=0;EPP=252.73;EPPR=1638.17;GTI=0;LEN=1;MEANALT=1;MQM=57.0783;MQMR=59.594;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.977661;PAO=0;PQA=0;PQR=0;PRO=0;QA=4543;QR=30096;RO=761;RPL=0;RPP=252.73;RPPR=1655.5;RPR=115;RUN=1;SAF=115;SAP=252.73;SAR=0;SRF=759;SRP=1638.17;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:307:280,27:280:11063:27:1086:-2.54166,0,-902.414 0/1:314:258,56:258:10171:56:2226:-103.657,0,-820.157 0/1:165:147,18:147:5832:18:692:-6.7793,0,-474.437 0/1:90:76,14:76:3030:14:539:-18.6733,0,-244.123 dDocent_Contig_16055 33 . C A 59.3697 . AB=0.25;ABP=9.52472;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=33;DPB=33;DPRA=1.14286;EPP=9.52472;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=1191;RO=30;RPL=0;RPP=9.52472;RPPR=68.1545;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 0/0:20:20,0:20:802:0:0:0,-6.0206,-72.4971 0/1:12:9,3:9:351:3:122:-7.76013,0,-28.3373 0/0:1:1,0:1:38:0:0:0,-0.30103,-3.79727 dDocent_Contig_16056 8 . G A 602.539 . AB=0.325;ABP=24.2907;AC=4;AF=0.5;AN=8;AO=26;CIGAR=1X;DP=80;DPB=80;DPRA=0;EPP=59.4686;EPPR=120.27;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.769231;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1003;QR=2067;RO=54;RPL=0;RPP=59.4686;RPPR=120.27;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:16,8:16:597:8:307:-20.7669,0,-46.8393 0/1:38:28,10:28:1086:10:387:-23.7484,0,-86.6049 0/1:9:7,2:7:267:2:76:-4.5054,0,-21.6836 0/1:9:3,6:3:117:6:233:-18.6308,0,-8.20111 dDocent_Contig_16057 192 . A G 242.384 . AB=0.333333;ABP=10.2485;AC=2;AF=0.25;AN=8;AO=10;CIGAR=1X;DP=55;DPB=55;DPRA=1.2;EPP=24.725;EPPR=76.4061;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.688889;PAO=0;PQA=0;PQR=0;PRO=0;QA=399;QR=1770;RO=45;RPL=10;RPP=24.725;RPPR=100.727;RPR=0;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=3;SRP=76.4061;SRR=42;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:9:9,0:9:360:0:0:0,-2.70927,-32.7623 0/0:16:16,0:16:621:0:0:0,-4.81648,-56.2214 0/1:18:14,4:14:546:4:163:-9.63989,0,-44.0612 0/1:12:6,6:6:243:6:236:-17.9965,0,-18.6358 dDocent_Contig_16059 98 . N A 119.289 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=7.37776;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=129;QR=0;RO=0;RPL=4;RPP=11.6962;RPPR=0;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:4:0,4:0:0:4:129:-11.9286,-1.20412,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_16060 23 . T A 291.434 . AB=0.222222;ABP=45.2334;AC=2;AF=0.25;AN=8;AO=14;CIGAR=1X;DP=123;DPB=123;DPRA=1.05;EPP=33.4109;EPPR=239.701;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=564;QR=4353;RO=109;RPL=0;RPP=33.4109;RPPR=239.701;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=109;SRP=239.701;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:42:42,0:42:1683:0:0:0,-12.6433,-151.69 0/1:34:25,9:25:1010:9:362:-22.7092,0,-80.958 0/1:29:24,5:24:959:5:202:-9.83221,0,-77.879 0/0:18:18,0:18:701:0:0:0,-5.41854,-63.4065 dDocent_Contig_16062 159 . T C 38.0625 . AB=0.157895;ABP=22.325;AC=2;AF=0.25;AN=8;AO=4;CIGAR=1X;DP=38;DPB=38;DPRA=2.2;EPP=11.6962;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.970588;PAO=0;PQA=0;PQR=0;PRO=0;QA=159;QR=1359;RO=34;RPL=4;RPP=11.6962;RPPR=76.8404;RPR=0;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=76.8404;SRR=34;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:14:13,1:13:530:1:41:0,-0.119853,-43.952 0/0:5:5,0:5:203:0:0:0,-1.50515,-18.6531 0/1:6:4,2:4:162:2:77:-5.50265,0,-13.1608 0/1:13:12,1:12:464:1:41:-0.181177,0,-38.1873 dDocent_Contig_16063 155 . A G 642.996 . AB=0.304348;ABP=33.5997;AC=4;AF=0.5;AN=8;AO=28;CIGAR=1X;DP=92;DPB=92;DPRA=0;EPP=63.8115;EPPR=141.985;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1089;QR=2495;RO=64;RPL=0;RPP=63.8115;RPPR=141.985;RPR=28;RUN=1;SAF=0;SAP=63.8115;SAR=28;SRF=0;SRP=141.985;SRR=64;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:51:42,9:42:1626:9:359:-17.3214,0,-131.231 0/1:26:12,14:12:474:14:562:-43.0968,0,-35.1836 0/1:10:7,3:7:275:3:89:-5.28726,0,-22.1076 0/1:5:3,2:3:120:2:79:-5.99209,0,-9.68216 dDocent_Contig_16064 8 . G C 242.801 . AB=0.3;ABP=16.9077;AC=3;AF=0.375;AN=8;AO=12;CIGAR=1X;DP=49;DPB=49;DPRA=1.48148;EPP=3.0103;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=50;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=463;QR=1426;RO=37;RPL=0;RPP=29.068;RPPR=83.3548;RPR=12;RUN=1;SAF=6;SAP=3.0103;SAR=6;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:13,2:13:500:2:77:-2.79338,0,-40.8319 0/0:9:9,0:9:343:0:0:0,-2.70927,-31.2275 0/1:18:12,6:12:466:6:226:-14.1912,0,-36.8735 0/1:7:3,4:3:117:4:160:-12.6764,0,-8.80317 dDocent_Contig_16065 21 . G C 263.374 . AB=0.289474;ABP=17.6392;AC=2;AF=0.25;AN=8;AO=11;CIGAR=1X;DP=65;DPB=65;DPRA=1.40741;EPP=26.8965;EPPR=120.27;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.944444;PAO=0;PQA=0;PQR=0;PRO=0;QA=449;QR=2117;RO=54;RPL=0;RPP=26.8965;RPPR=120.27;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:16:16,0:16:628:0:0:0,-4.81648,-56.8529 0/1:13:10,3:10:397:3:123:-7.5514,0,-32.1751 0/1:25:17,8:17:660:8:326:-22.1839,0,-52.1988 0/0:11:11,0:11:432:0:0:0,-3.31133,-39.2331 dDocent_Contig_16066 17 . G A 680.258 . AB=0.676471;ABP=12.2071;AC=2;AF=0.333333;AN=6;AO=23;CIGAR=1X;DP=69;DPB=69;DPRA=0.485714;EPP=52.9542;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=901;QR=1836;RO=46;RPL=0;RPP=52.9542;RPPR=102.898;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 0/0:35:35,0:35:1405:0:0:0,-10.536,-126.704 0/1:23:7,16:7:277:16:630:-50.1095,0,-18.3737 0/1:11:4,7:4:154:7:271:-21.4392,0,-10.9205 dDocent_Contig_16067 12 . C T 101.92 . AB=0.444444;ABP=3.25157;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X3M1X;DP=65;DPB=65;DPRA=0.482143;EPP=11.6962;EPPR=135.47;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=158;QR=2413;RO=61;RPL=0;RPP=11.6962;RPPR=135.47;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=61;SRP=135.47;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:11:11,0:11:439:0:0:0,-3.31133,-39.8661 0|1:9:5,4:5:203:4:158:-11.891,0,-15.9438 0|0:25:25,0:25:991:0:0:0,-7.52575,-89.4873 0|0:20:20,0:20:780:0:0:0,-6.0206,-70.52 dDocent_Contig_16072 11 . A T 47.3991 . AB=0.185185;ABP=26.2531;AC=2;AF=0.25;AN=8;AO=8;CIGAR=1X;DP=80;DPB=80;DPRA=0;EPP=20.3821;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.708333;PAO=0;PQA=0;PQR=0;PRO=0;QA=295;QR=2840;RO=72;RPL=0;RPP=20.3821;RPPR=159.356;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=66;SRP=111.584;SRR=6;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:24:23,1:23:904:1:40:0,-3.22904,-77.6666 0/1:12:10,2:10:391:2:75:-3.50644,0,-31.9313 0/0:29:27,2:27:1058:2:82:0,-0.950192,-87.7324 0/1:15:12,3:12:487:3:98:-4.62766,0,-39.6662 dDocent_Contig_16074 40 . A T 3068.14 . AB=0.666667;ABP=39.2015;AC=4;AF=0.5;AN=8;AO=100;CIGAR=1X;DP=150;DPB=150;DPRA=0;EPP=220.158;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3980;QR=1976;RO=50;RPL=0;RPP=220.158;RPPR=111.584;RPR=100;RUN=1;SAF=100;SAP=220.158;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:76:28,48:28:1111:48:1919:-150.032,0,-77.3947 0/1:46:9,37:9:347:37:1485:-120.048,0,-17.736 0/1:9:5,4:5:197:4:161:-12.1656,0,-15.3955 0/1:19:8,11:8:321:11:415:-31.9657,0,-23.5385 dDocent_Contig_16075 165 . A C 94.1481 . AB=0.263158;ABP=12.2676;AC=2;AF=0.25;AN=8;AO=5;CIGAR=1X;DP=29;DPB=29;DPRA=1.9;EPP=13.8677;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=40;MQMR=40;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=204;QR=896;RO=24;RPL=5;RPP=13.8677;RPPR=55.1256;RPR=0;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=55.1256;SRR=24;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:9,1:9:336:1:41:-0.735817,0,-25.8592 0/1:9:5,4:5:186:4:163:-11.1078,0,-13.5265 0/0:7:7,0:7:259:0:0:0,-2.10721,-22.4007 0/0:3:3,0:3:115:0:0:0,-0.90309,-10.0796 dDocent_Contig_16076 50 . G A 59.9197 . AB=0.25;ABP=9.52472;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=39;DPB=39;DPRA=1.33333;EPP=9.52472;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=118;QR=1455;RO=36;RPL=3;RPP=9.52472;RPPR=81.1833;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:9,3:9:363:3:118:-7.38984,0,-29.4208 0/0:14:14,0:14:566:0:0:0,-4.21442,-51.2827 0/0:9:9,0:9:366:0:0:0,-2.70927,-33.3052 0/0:4:4,0:4:160:0:0:0,-1.20412,-14.7834 dDocent_Contig_16077 15 . C T 147.987 . AB=0.35;ABP=6.91895;AC=2;AF=0.25;AN=8;AO=7;CIGAR=1X2M6D1M;DP=37;DPB=32.8;DPRA=1.17647;EPP=18.2106;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=261;QR=1192;RO=30;RPL=0;RPP=18.2106;RPPR=68.1545;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:13:13,0:13:515:0:0:0,-3.91339,-46.6963 0|1:13:9,4:9:358:4:146:-9.57925,0,-28.6704 0|0:4:4,0:4:158:0:0:0,-1.20412,-14.6 0|1:7:4,3:4:161:3:115:-8.61727,0,-12.7683 dDocent_Contig_16078 19 . A G 197.499 . AB=0.25;ABP=22.5536;AC=2;AF=0.25;AN=8;AO=9;CIGAR=1X;DP=70;DPB=70;DPRA=1.05882;EPP=22.5536;EPPR=135.47;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.983607;PAO=0;PQA=0;PQR=0;PRO=0;QA=369;QR=2437;RO=61;RPL=0;RPP=22.5536;RPPR=135.47;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=61;SRP=135.47;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:13,6:13:524:6:246:-16.8005,0,-41.7859 0/1:17:14,3:14:560:3:123:-6.34728,0,-45.6263 0/0:16:16,0:16:632:0:0:0,-4.81648,-57.2147 0/0:18:18,0:18:721:0:0:0,-5.41854,-65.2152 dDocent_Contig_16081 124 . G T 111.838 . AB=0.333333;ABP=8.07707;AC=2;AF=0.25;AN=8;AO=7;CIGAR=1X;DP=41;DPB=41;DPRA=1.05;EPP=18.2106;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=225;QR=1167;RO=34;RPL=0;RPP=18.2106;RPPR=76.8404;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=76.8404;SRR=34;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:19:19,0:19:647:0:0:0,-5.71957,-58.55 0/0:1:1,0:1:35:0:0:0,-0.30103,-3.49863 0/1:9:7,2:7:243:2:69:-3.84339,0,-19.4996 0/1:12:7,5:7:242:5:156:-10.7362,0,-18.5054 dDocent_Contig_16083 42 . T C 381.463 . AB=0.571429;ABP=3.32051;AC=3;AF=0.375;AN=8;AO=15;CIGAR=1X;DP=79;DPB=79;DPRA=0.295082;EPP=35.5824;EPPR=141.985;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=456;QR=2494;RO=64;RPL=0;RPP=35.5824;RPPR=141.985;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=64;SRP=141.985;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:13:13,0:13:509:0:0:0,-3.91339,-46.1517 0/0:48:48,0:48:1865:0:0:0,-14.4494,-168.068 1/1:11:0,11:0:0:11:325:-29.5378,-3.31133,0 0/1:7:3,4:3:120:4:131:-10.0065,0,-9.0801 dDocent_Contig_16084 90 . C G 37.689 . AB=0.173913;ABP=24.253;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=67;DPB=67;DPRA=5.7;EPP=13.8677;EPPR=137.642;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.903226;PAO=0;PQA=0;PQR=0;PRO=0;QA=170;QR=2145;RO=62;RPL=5;RPP=13.8677;RPPR=137.642;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:34:33,1:33:1149:1:36:0,-6.63674,-100.12 0/1:23:19,4:19:640:4:134:-5.46752,0,-50.9893 0/0:8:8,0:8:285:0:0:0,-2.40824,-25.9946 0/0:2:2,0:2:71:0:0:0,-0.60206,-6.74206 dDocent_Contig_16085 34 . C T 68.4749 . AB=0.2;ABP=18.6449;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=32;DPB=32;DPRA=3.33333;EPP=11.6962;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=159;QR=1131;RO=28;RPL=0;RPP=11.6962;RPPR=63.8115;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:6:6,0:6:239:0:0:0,-1.80618,-21.8839 0/1:20:16,4:16:648:4:159:-8.67135,0,-52.6327 0/0:6:6,0:6:244:0:0:0,-1.80618,-22.3388 ./.:.:.:.:.:.:.:. dDocent_Contig_16086 34 . C T 166.053 . AB=0.285714;ABP=16.9698;AC=3;AF=0.375;AN=8;AO=10;CIGAR=1X;DP=45;DPB=45;DPRA=1.16667;EPP=24.725;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.971429;PAO=0;PQA=0;PQR=0;PRO=0;QA=350;QR=1404;RO=35;RPL=0;RPP=24.725;RPPR=79.0118;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:9,3:9:365:3:116:-7.20392,0,-29.6027 0/1:13:9,4:9:360:4:127:-7.82942,0,-28.8495 0/0:10:10,0:10:397:0:0:0,-3.0103,-36.0883 0/1:10:7,3:7:282:3:107:-6.9699,0,-22.7423 dDocent_Contig_16087 14 . G T 1957.23 . AB=0.646465;ABP=21.4568;AC=4;AF=0.5;AN=8;AO=64;CIGAR=2X;DP=99;DPB=99;DPRA=0;EPP=141.985;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=59.7188;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.914286;PAO=0;PQA=0;PQR=0;PRO=0;QA=2574;QR=1344;RO=35;RPL=0;RPP=141.985;RPPR=79.0118;RPR=64;RUN=1;SAF=64;SAP=141.985;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:36:11,25:11:436:25:1001:-79.5485,0,-28.7593 0|1:36:13,23:13:497:23:933:-73.3689,0,-34.2355 0|1:14:5,9:5:182:9:360:-28.547,0,-12.5155 0|1:13:6,7:6:229:7:280:-21.6566,0,-17.0611 dDocent_Contig_16088 77 . C T 574.876 . AB=0.446429;ABP=4.40625;AC=3;AF=0.375;AN=8;AO=28;CIGAR=1X;DP=97;DPB=97;DPRA=0;EPP=63.8115;EPPR=152.842;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.985507;PAO=0;PQA=0;PQR=0;PRO=0;QA=986;QR=2508;RO=69;RPL=28;RPP=63.8115;RPPR=152.842;RPR=0;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=69;SRP=152.842;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:41:38,3:38:1371:3:111:0,-1.98831,-113.325 0/1:44:25,19:25:918:19:670:-47.374,0,-69.692 0/1:7:4,3:4:147:3:94:-6.66275,0,-11.4827 0/1:5:2,3:2:72:3:111:-8.84877,0,-5.33149 dDocent_Contig_16091 13 . A T 276.536 . AB=0.26087;ABP=25.858;AC=2;AF=0.25;AN=8;AO=14;CIGAR=2X;DP=103;DPB=103;DPRA=1.57407;EPP=33.4109;EPPR=172.385;GTI=0;LEN=1;MEANALT=2.66667;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=544;QR=3094;RO=78;RPL=0;RPP=33.4109;RPPR=172.385;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=78;SRP=172.385;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:11:4,4,3:4:160:4,3:157,122:-11.7011,0,-11.9731,-2.87636,-3.15157,-15.1571 0|1:35:21,8,4:21:839:8,4:312,153:-19.3503,0,-66.7391,-14.3331,-57.8066,-82.2473 0|0:39:36,2,1:36:1409:2,1:75,41:0,-4.70086,-119.938,-7.67331,-117.38,-123.221 0|0:18:17,0,0:17:686:0,0:0,0:0,-5.11751,-61.7919,-5.11751,-61.7919,-61.7919 dDocent_Contig_16093 13 . G A 123.838 . AB=0.163265;ABP=51.2702;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X;DP=167;DPB=167;DPRA=1.01205;EPP=22.5536;EPPR=346.103;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=354;QR=6293;RO=158;RPL=0;RPP=22.5536;RPPR=346.103;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=158;SRP=346.103;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:49:41,8:41:1660:8:313:-13.7817,0,-134.872 0/0:48:48,0:48:1935:0:0:0,-14.4494,-174.343 0/0:35:34,1:34:1319:1:41:0,-6.44148,-114.885 0/0:35:35,0:35:1379:0:0:0,-10.536,-124.365 dDocent_Contig_16094 8 . C G 226.585 . AB=0.129032;ABP=114.176;AC=4;AF=0.5;AN=8;AO=12;CIGAR=1X4M;DP=93;DPB=93;DPRA=0;EPP=14.5915;EPPR=163.699;GTI=0;LEN=1;MEANALT=1.5;MQM=53.25;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.166667;PAIREDR=0.864865;PAO=0;PQA=0;PQR=0;PRO=0;QA=470;QR=2891;RO=74;RPL=0;RPP=29.068;RPPR=163.699;RPR=12;RUN=1;SAF=10;SAP=14.5915;SAR=2;SRF=74;SRP=163.699;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:33:28,4,1:28:1095:4,1:156,39:-4.36546,0,-88.8231,-9.58826,-86.8214,-99.3151 0|1:34:29,3,2:29:1142:3,2:115,78:-0.70295,0,-93.0488,-3.01839,-87.5404,-96.3742 0|1:12:7,0,5:7:271:0,5:0,195:-14.311,-16.4182,-38.6767,0,-22.6469,-21.1417 0|1:14:10,0,4:10:383:0,4:0,158:-9.37404,-12.3843,-43.8249,0,-31.8122,-30.6081 dDocent_Contig_16095 1 . N A 157.056 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=5;CIGAR=1X3M1X;DP=5;DPB=5;DPRA=0;EPP=13.8677;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=53;MQMR=0;NS=1;NUMALT=1;ODDS=8.07091;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=171;QR=0;RO=0;RPL=0;RPP=13.8677;RPPR=0;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:5:0,5:0:0:5:171:-15.7055,-1.50515,0 .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. dDocent_Contig_16096 29 . G A 45.5606 . AB=0.166667;ABP=20.3821;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=54;DPB=54;DPRA=1.5;EPP=9.52472;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=2047;RO=51;RPL=0;RPP=9.52472;RPPR=113.755;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:15,3:15:605:3:122:-5.95395,0,-49.3671 0/0:17:17,0:17:683:0:0:0,-5.11751,-61.7969 0/0:14:14,0:14:557:0:0:0,-4.21442,-50.4717 0/0:5:5,0:5:202:0:0:0,-1.50515,-18.5615 dDocent_Contig_16097 17 . T C 207.405 . AB=0.36;ABP=7.26639;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=37;DPB=37;DPRA=1.04167;EPP=22.5536;EPPR=7.97367;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.555556;PAIREDR=0.428571;PAO=0;PQA=0;PQR=0;PRO=0;QA=345;QR=1027;RO=28;RPL=0;RPP=22.5536;RPPR=63.8115;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=18;SRP=7.97367;SRR=10;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:12:12,0:12:438:0:0:0,-3.61236,-39.754 0/1:7:3,4:3:118:4:150:-11.7579,0,-8.89568 0/1:18:13,5:13:471:5:195:-12.5055,0,-37.3061 ./.:.:.:.:.:.:.:. dDocent_Contig_16100 90 . T C 173.539 . AB=0.314286;ABP=13.4954;AC=2;AF=0.25;AN=8;AO=11;CIGAR=1X;DP=63;DPB=63;DPRA=1.25;EPP=26.8965;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.942308;PAO=0;PQA=0;PQR=0;PRO=0;QA=341;QR=1599;RO=52;RPL=11;RPP=26.8965;RPPR=115.927;RPR=0;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:22:22,0:22:682:0:0:0,-6.62266,-61.6755 0/1:13:6,7:6:168:7:233:-17.3827,0,-11.4841 0/1:22:18,4:18:571:4:108:-3.36447,0,-45.0702 0/0:6:6,0:6:178:0:0:0,-1.80618,-16.3141 dDocent_Contig_16101 165 . A G 1314.6 . AB=0.596491;ABP=7.61992;AC=5;AF=0.625;AN=8;AO=44;CIGAR=1X;DP=67;DPB=67;DPRA=0;EPP=98.5551;EPPR=44.6459;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1696;QR=845;RO=23;RPL=44;RPP=98.5551;RPPR=44.6459;RPR=0;RUN=1;SAF=0;SAP=98.5551;SAR=44;SRF=0;SRP=52.9542;SRR=23;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:40:15,25:15:547:25:955:-74.2026,0,-37.5237 1/1:10:0,10:0:0:10:402:-36.5402,-3.0103,0 0/1:6:2,4:2:67:4:163:-13.2522,0,-4.55696 0/1:11:6,5:6:231:5:176:-12.8625,0,-17.8466 dDocent_Contig_16102 22 . C T 47.8265 . AB=0.5;ABP=3.0103;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X;DP=70;DPB=70;DPRA=0.181818;EPP=7.35324;EPPR=150.67;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=2749;RO=68;RPL=0;RPP=7.35324;RPPR=150.67;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=68;SRP=150.67;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:18:18,0:18:727:0:0:0,-5.41854,-65.754 0/0:27:27,0:27:1096:0:0:0,-8.12781,-98.9231 0/0:21:21,0:21:844:0:0:0,-6.32163,-76.2708 0/1:4:2,2:2:82:2:81:-6.48161,0,-6.57556 dDocent_Contig_16103 30 . A T 85.2525 . AB=0.172414;ABP=30.0414;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=109;DPB=109;DPRA=1.0875;EPP=13.8677;EPPR=228.843;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.990385;PAO=0;PQA=0;PQR=0;PRO=0;QA=203;QR=4073;RO=104;RPL=0;RPP=13.8677;RPPR=228.843;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=104;SRP=228.843;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:24,5:24:965:5:203:-9.92319,0,-78.4211 0/0:44:44,0:44:1703:0:0:0,-13.2453,-153.493 0/0:20:20,0:20:763:0:0:0,-6.0206,-68.9869 0/0:16:16,0:16:642:0:0:0,-4.81648,-58.1152 dDocent_Contig_16104 59 . A G 47.3248 . AB=0.176471;ABP=18.4661;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=27;DPB=27;DPRA=3.4;EPP=9.52472;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.833333;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=954;RO=24;RPL=3;RPP=9.52472;RPPR=55.1256;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:14,3:14:559:3:122:-6.25498,0,-45.532 ./.:.:.:.:.:.:.:. 0/0:8:8,0:8:320:0:0:0,-2.40824,-29.1678 0/0:2:2,0:2:75:0:0:0,-0.60206,-7.12034 dDocent_Contig_16105 50 . G A 2036.5 . AB=0.666667;ABP=21.8297;AC=5;AF=0.625;AN=8;AO=65;CIGAR=1X;DP=91;DPB=91;DPRA=0;EPP=144.156;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=0.961538;PAO=0;PQA=0;PQR=0;PRO=0;QA=2569;QR=1010;RO=26;RPL=65;RPP=144.156;RPPR=59.4686;RPR=0;RUN=1;SAF=65;SAP=144.156;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:45:15,30:15:583:30:1201:-94.8194,0,-39.2571 0/1:14:8,6:8:322:6:242:-17.9431,0,-25.1334 0/1:19:3,16:3:105:16:639:-52.1253,0,-4.07404 1/1:13:0,13:0:0:13:487:-44.1595,-3.91339,0 dDocent_Contig_16106 155 . A T 47.568 . AB=0.1875;ABP=16.582;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=24;DPB=24;DPRA=4;EPP=9.52472;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=119;QR=799;RO=21;RPL=0;RPP=9.52472;RPPR=48.6112;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=48.6112;SRR=21;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:13,3:13:517:3:119:-6.27891,0,-42.0576 0/0:7:7,0:7:243:0:0:0,-2.10721,-22.1966 0/0:1:1,0:1:39:0:0:0,-0.30103,-3.89656 ./.:.:.:.:.:.:.:. dDocent_Contig_16107 8 . C T 720.33 . AB=0.288136;ABP=49.0161;AC=4;AF=0.5;AN=8;AO=34;CIGAR=1X;DP=118;DPB=118;DPRA=0;EPP=76.8404;EPPR=185.414;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=54.6548;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.72619;PAO=0;PQA=0;PQR=0;PRO=0;QA=1262;QR=3256;RO=84;RPL=0;RPP=76.8404;RPPR=185.414;RPR=34;RUN=1;SAF=34;SAP=76.8404;SAR=0;SRF=84;SRP=185.414;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:39:22,17:22:851:17:644:-46.5516,0,-63.6293 0/1:29:21,8:21:817:8:283:-17.0737,0,-60.6752 0/1:33:27,6:27:1045:6:232:-11.3149,0,-81.6408 0/1:17:14,3:14:543:3:103:-4.49039,0,-42.9812 dDocent_Contig_16108 42 . C T 677.849 . AB=0.446809;ABP=4.16534;AC=5;AF=0.625;AN=8;AO=25;CIGAR=1X;DP=51;DPB=51;DPRA=0;EPP=57.2971;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=954;QR=1039;RO=26;RPL=0;RPP=57.2971;RPPR=59.4686;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:4:0,4:0:0:4:164:-15.1499,-1.20412,0 0/1:29:13,16:13:515:16:603:-45.8544,0,-37.9638 0/1:15:11,4:11:442:4:146:-8.9801,0,-35.6196 0/1:3:2,1:2:82:1:41:-3.19148,0,-6.87659 dDocent_Contig_16109 15 . C T 848.668 . AB=0.165829;ABP=196.031;AC=1;AF=0.125;AN=8;AO=33;CIGAR=1X1M1X;DP=199;DPB=199;DPRA=0;EPP=74.6689;EPPR=276.616;GTI=0;LEN=1;MEANALT=2.25;MQM=58.4848;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.818182;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1304;QR=4969;RO=126;RPL=0;RPP=74.6689;RPPR=276.616;RPR=33;RUN=1;SAF=33;SAP=74.6689;SAR=0;SRF=126;SRP=276.616;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:61:42,9,10:42:1669:9,10:362,392:-19.5836,-2.38886,-137.083,0,-107.562,-134.385 0|0:55:43,6,6:43:1703:6,6:242,243:-7.09402,-0.0908552,-138.44,0,-120.207,-138.35 0|1:46:23,12,10:23:917:12,10:457,370:-29.9892,0,-71.9213,-6.66482,-45.2906,-79.1842 0|0:37:18,6,13:18:680:6,13:243,499:-35.5174,-20.8918,-74.805,0,-35.6583,-51.7891 dDocent_Contig_16110 31 . C T 33.9038 . AB=0.222222;ABP=9.04217;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X;DP=28;DPB=28;DPRA=1.42105;EPP=7.35324;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.961538;PAO=0;PQA=0;PQR=0;PRO=0;QA=79;QR=1034;RO=26;RPL=0;RPP=7.35324;RPPR=59.4686;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:7,2:7:279:2:79:-4.78797,0,-22.771 0/0:3:3,0:3:109:0:0:0,-0.90309,-10.163 0/0:11:11,0:11:444:0:0:0,-3.31133,-40.3158 0/0:5:5,0:5:202:0:0:0,-1.50515,-18.5619 dDocent_Contig_16111 36 . T C 260.46 . AB=0.434783;ABP=3.86001;AC=2;AF=0.25;AN=8;AO=12;CIGAR=1X;DP=83;DPB=83;DPRA=0;EPP=29.068;EPPR=157.185;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.0833333;PAIREDR=0.676056;PAO=0;PQA=0;PQR=0;PRO=0;QA=445;QR=2707;RO=71;RPL=0;RPP=29.068;RPPR=157.185;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=71;SRP=157.185;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:38:37,1:37:1400:1:9:0,-10.5391,-125.368 0/0:22:21,1:21:802:1:41:0,-2.52809,-68.4057 0/1:17:8,9:8:310:9:354:-27.1029,0,-23.1454 0/1:6:5,1:5:195:1:41:-2.28839,0,-16.1176 dDocent_Contig_16112 8 . C T 633.014 . AB=0.376812;ABP=12.1053;AC=4;AF=0.5;AN=8;AO=26;CIGAR=1X;DP=69;DPB=69;DPRA=0;EPP=59.4686;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1000;QR=1639;RO=43;RPL=0;RPP=59.4686;RPPR=96.3836;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:19,6:19:726:6:232:-13.7232,0,-58.1445 0/1:31:18,13:18:686:13:496:-35.6546,0,-52.7392 0/1:6:3,3:3:116:3:116:-9.01152,0,-9.01152 0/1:7:3,4:3:111:4:156:-12.3101,0,-8.24557 dDocent_Contig_16113 16 . A G 78.3358 . AB=0.192308;ABP=24.391;AC=2;AF=0.25;AN=8;AO=5;CIGAR=1X;DP=48;DPB=48;DPRA=1.18182;EPP=13.8677;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.9767;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.883721;PAO=0;PQA=0;PQR=0;PRO=0;QA=203;QR=1678;RO=43;RPL=0;RPP=13.8677;RPPR=96.3836;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:11,0:11:436:0:0:0,-3.31133,-39.5921 0/1:8:6,2:6:244:2:81:-5.27749,0,-19.9306 0/1:18:15,3:15:565:3:122:-5.95395,0,-45.751 0/0:11:11,0:11:433:0:0:0,-3.31133,-39.3216 dDocent_Contig_16114 1 . N G 110.033 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=118;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:118:-11.0027,-0.90309,0 ./.:.:.:.:.:.:.:. dDocent_Contig_16115 133 . C T 127.883 . AB=0.454545;ABP=3.20771;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=26;DPB=26;DPRA=1.46667;EPP=13.8677;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=195;QR=816;RO=21;RPL=5;RPP=13.8677;RPPR=48.6112;RPR=0;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=48.6112;SRR=21;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:11,0:11:430:0:0:0,-3.31133,-39.0449 0/1:11:6,5:6:236:5:195:-14.6122,0,-18.2983 ./.:.:.:.:.:.:.:. 0/0:4:4,0:4:150:0:0:0,-1.20412,-13.8636 dDocent_Contig_16116 62 . C T 705.3 . AB=0.368421;ABP=14.4391;AC=4;AF=0.5;AN=8;AO=28;CIGAR=1X;DP=76;DPB=76;DPRA=0;EPP=63.8115;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=0.714286;PAIREDR=0.916667;PAO=0;PQA=0;PQR=0;PRO=0;QA=1104;QR=1914;RO=48;RPL=28;RPP=63.8115;RPPR=107.241;RPR=0;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:14,11:14:549:11:447:-33.0598,0,-42.2223 0/1:28:20,8:20:804:8:316:-20.375,0,-64.2479 0/1:9:4,5:4:164:5:193:-15.0286,0,-12.4406 0/1:14:10,4:10:397:4:148:-9.46465,0,-31.8688 dDocent_Contig_16117 67 . T C 40.872 . AB=0.0588235;ABP=89.2305;AC=0;AF=0;AN=8;AO=3;CIGAR=1X1M4D8M;DP=59;DPB=58.5714;DPRA=6.375;EPP=9.52472;EPPR=109.412;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.959184;PAO=0;PQA=0;PQR=0;PRO=0;QA=119;QR=1921;RO=49;RPL=3;RPP=9.52472;RPPR=109.412;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:6:6,0,0:6:232:0,0:0,0:0,-1.80618,-21.2488,-1.80618,-21.2488,-21.2488 0|0:33:27,2,3:27:1057:2,3:80,113:-1.17134,-2.67654,-89.0638,0,-80.4087,-86.0971 0|0:18:14,1,3:14:553:1,3:39,121:-5.76973,-6.78157,-51.9803,0,-42.3056,-44.6081 0|0:2:2,0,0:2:79:0,0:0,0:0,-0.60206,-7.49763,-0.60206,-7.49763,-7.49763 dDocent_Contig_16118 19 . A G 198.431 . AB=0.111111;ABP=26.6552;AC=3;AF=0.375;AN=8;AO=7;CIGAR=1X;DP=40;DPB=40;DPRA=1.35294;EPP=18.2106;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=0.939394;PAO=0;PQA=0;PQR=0;PRO=0;QA=287;QR=1311;RO=33;RPL=0;RPP=18.2106;RPPR=74.6689;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:6:6,0:6:239:0:0:0,-1.80618,-21.8848 0/1:18:16,2:16:640:2:82:-2.36114,0,-52.5149 0/0:11:11,0:11:432:0:0:0,-3.31133,-39.2308 1/1:5:0,5:0:0:5:205:-18.835,-1.50515,0 dDocent_Contig_16119 16 . C A 303.783 . AB=0.269231;ABP=15.0369;AC=5;AF=0.625;AN=8;AO=11;CIGAR=1X;DP=30;DPB=30;DPRA=0;EPP=26.8965;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=449;QR=765;RO=19;RPL=0;RPP=26.8965;RPPR=44.2683;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:11,1:11:440:1:40:-0.383319,0,-36.3411 0/1:7:5,2:5:205:2:82:-5.67247,0,-16.7278 0/1:7:3,4:3:120:4:163:-12.9512,0,-9.0801 1/1:4:0,4:0:0:4:164:-15.1499,-1.20412,0 dDocent_Contig_16121 137 . C A 71.6464 . AB=0.125;ABP=110.498;AC=3;AF=0.375;AN=8;AO=11;CIGAR=1X;DP=108;DPB=108;DPRA=1.46667;EPP=26.8965;EPPR=213.643;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.818182;PAIREDR=0.28866;PAO=0;PQA=0;PQR=0;PRO=0;QA=413;QR=3476;RO=97;RPL=0;RPP=26.8965;RPPR=213.643;RPR=11;RUN=1;SAF=0;SAP=26.8965;SAR=11;SRF=0;SRP=213.643;SRR=97;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:42:38,4:38:1336:4:150:-1.22211,0,-107.883 0/1:29:25,4:25:900:4:160:-6.05305,0,-72.5857 0/1:17:14,3:14:509:3:103:-4.49145,0,-41.0311 0/0:20:20,0:20:731:0:0:0,-6.0206,-66.1192 dDocent_Contig_16122 67 . T A 63.9086 . AB=0.444444;ABP=3.25157;AC=2;AF=0.25;AN=8;AO=4;CIGAR=1X3M1X;DP=41;DPB=41;DPRA=0.28125;EPP=11.6962;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.75;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=133;QR=1199;RO=36;RPL=4;RPP=11.6962;RPPR=81.1833;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:4:3,1:3:102:1:31:-1.89533,0,-8.31278 0|1:5:2,3:2:67:3:102:-8.0118,0,-4.85799 0|0:12:11,0:11:368:0:0:0,-3.31133,-33.0467 0|0:20:20,0:20:662:0:0:0,-6.0206,-59.8937 dDocent_Contig_16125 107 . N T 64.6236 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=50;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=69;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:69:-6.46127,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_16126 107 . N A 196.264 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=6;CIGAR=1X;DP=6;DPB=6;DPRA=0;EPP=16.0391;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=207;QR=0;RO=0;RPL=0;RPP=16.0391;RPPR=0;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:5:0,5:0:0:5:171:-15.7259,-1.50515,0 1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0 dDocent_Contig_16127 16 . G A 130.268 . AB=0.16;ABP=53.2147;AC=2;AF=0.25;AN=8;AO=9;CIGAR=1X;DP=90;DPB=90;DPRA=1.66667;EPP=22.5536;EPPR=178.9;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.8889;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.876543;PAO=0;PQA=0;PQR=0;PRO=0;QA=366;QR=3262;RO=81;RPL=0;RPP=22.5536;RPPR=178.9;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=81;SRP=178.9;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:20,6:20:806:6:243:-14.4208,0,-65.0292 0/1:24:22,2:22:893:2:82:-0.554958,0,-73.4519 0/0:25:24,1:24:970:1:41:0,-3.43118,-83.5003 0/0:15:15,0:15:593:0:0:0,-4.51545,-53.6924 dDocent_Contig_16128 12 . T C 1024.02 . AB=0.590164;ABP=7.31765;AC=4;AF=0.5;AN=8;AO=36;CIGAR=1X;DP=61;DPB=61;DPRA=0;EPP=81.1833;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=0.916667;PAIREDR=0.92;PAO=0;PQA=0;PQR=0;PRO=0;QA=1408;QR=998;RO=25;RPL=0;RPP=81.1833;RPPR=57.2971;RPR=36;RUN=1;SAF=36;SAP=81.1833;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:2,10:2:80:10:389:-31.7532,0,-3.97943 0/1:15:8,7:8:323:7:277:-20.7834,0,-24.9235 0/1:11:7,4:7:279:4:159:-11.3804,0,-22.1689 0/1:23:8,15:8:316:15:583:-45.8823,0,-21.8817 dDocent_Contig_16130 10 . G C 155.135 . AB=0.222222;ABP=27.1378;AC=2;AF=0.25;AN=8;AO=11;CIGAR=1X;DP=100;DPB=100;DPRA=1.62745;EPP=26.8965;EPPR=194.1;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.977273;PAO=0;PQA=0;PQR=0;PRO=0;QA=443;QR=3528;RO=88;RPL=0;RPP=26.8965;RPPR=194.1;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=88;SRP=194.1;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:6,4:6:243:4:164:-12.1396,0,-19.2379 0/1:26:22,4:22:892:4:158:-6.77188,0,-72.76 0/0:47:43,3:43:1712:3:121:0,-2.96757,-143.023 0/0:17:17,0:17:681:0:0:0,-5.11751,-61.6195 dDocent_Contig_16131 22 . A G 1824.35 . AB=0.525424;ABP=3.67278;AC=4;AF=0.5;AN=8;AO=62;CIGAR=1X;DP=118;DPB=118;DPRA=0;EPP=137.642;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=0.83871;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2489;QR=2238;RO=56;RPL=0;RPP=137.642;RPPR=124.613;RPR=62;RUN=1;SAF=62;SAP=137.642;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:46:16,30:16:648:30:1204:-94.7882,0,-44.8065 0/1:23:17,6:17:687:6:241:-15.1426,0,-55.2329 0/1:27:10,17:10:385:17:686:-53.9429,0,-26.8726 0/1:22:13,9:13:518:9:358:-25.9594,0,-40.344 dDocent_Contig_16132 21 . T C 145.734 . AB=0.625;ABP=4.09604;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=33;DPB=33;DPRA=0.96;EPP=13.8677;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=200;QR=1111;RO=28;RPL=0;RPP=13.8677;RPPR=63.8115;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:8:3,5:3:121:5:200:-15.9711,0,-8.87175 0/0:14:14,0:14:549:0:0:0,-4.21442,-49.7505 0/0:2:2,0:2:82:0:0:0,-0.60206,-7.77968 0/0:9:9,0:9:359:0:0:0,-2.70927,-32.6728 dDocent_Contig_16133 10 . G C 166.301 . AB=0.0555556;ABP=64.7766;AC=0;AF=0;AN=8;AO=4;CIGAR=2X;DP=109;DPB=109;DPRA=1.31915;EPP=11.6962;EPPR=209.3;GTI=0;LEN=1;MEANALT=1.5;MQM=13;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0.978947;PAO=0;PQA=0;PQR=0;PRO=0;QA=157;QR=3667;RO=95;RPL=0;RPP=11.6962;RPPR=209.3;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=95;SRP=209.3;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:36:26,2,8:26:991:2,8:79,312:-18.028,-24.1705,-104.846,0,-79.7987,-79.1089 0|0:26:24,2,0:24:936:2,0:78,0:0,-5.3588,-82.0832,-7.22472,-82.6852,-84.4013 0|0:16:16,0,0:16:618:0,0:0,0:0,-4.81648,-55.9558,-4.81648,-55.9558,-55.9558 0|0:31:29,0,2:29:1122:0,2:0,75:0,-8.72987,-100.902,-2.21159,-94.7595,-94.1574 dDocent_Contig_16134 24 . A C 1331.92 . AB=0.0625;ABP=56.2114;AC=0;AF=0;AN=8;AO=2;CIGAR=1X1M1X;DP=100;DPB=100;DPRA=0;EPP=7.35324;EPPR=111.584;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.66;PAO=0;PQA=0;PQR=0;PRO=0;QA=80;QR=1991;RO=50;RPL=0;RPP=7.35324;RPPR=111.584;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:15:9,0,6:9:360:0,6:0,241:-14.9261,-17.6353,-47.3171,0,-30.0536,-28.2475 0|0:38:21,0,17:21:837:0,17:0,684:-50.4508,-56.7724,-125.697,0,-69.3251,-64.2076 0|0:32:17,2,13:17:675:2,13:80,517:-37.4465,-35.9736,-90.9384,0,-48.9741,-51.6512 0|0:15:3,0,12:3:119:0,12:0,466:-37.7667,-38.6698,-48.4666,0,-10.1914,-6.57905 dDocent_Contig_16135 17 . A G 38.6199 . AB=0.157895;ABP=22.325;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=44;DPB=44;DPRA=2.28;EPP=9.52472;EPPR=60.6867;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=51.6341;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=0.487805;PAO=0;PQA=0;PQR=0;PRO=0;QA=121;QR=1563;RO=41;RPL=0;RPP=9.52472;RPPR=92.0407;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=37;SRP=60.6867;SRR=4;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:2:2,0:2:74:0:0:0,-0.60206,-7.02402 0/0:11:11,0:11:439:0:0:0,-3.31133,-39.8642 0/0:12:12,0:12:484:0:0:0,-3.61236,-41.1694 0/1:19:16,3:16:566:3:121:-5.56063,0,-41.6142 dDocent_Contig_16136 76 . T G 552.343 . AB=0.448276;ABP=4.35811;AC=3;AF=0.375;AN=8;AO=26;CIGAR=1X;DP=72;DPB=72;DPRA=1.38095;EPP=59.4686;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.923077;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=857;QR=1663;RO=46;RPL=26;RPP=59.4686;RPPR=102.898;RPR=0;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:14:14,0:14:505:0:0:0,-4.21442,-45.7863 0/1:22:14,8:14:512:8:260:-17.095,0,-39.7972 0/1:25:14,11:14:503:11:368:-25.9181,0,-38.0803 0/1:11:4,7:4:143:7:229:-17.6192,0,-9.90945 dDocent_Contig_16138 10 . G A 289.22 . AB=0.189873;ABP=69.0066;AC=2;AF=0.25;AN=8;AO=19;CIGAR=1X;DP=135;DPB=135;DPRA=14.6667;EPP=44.2683;EPPR=254.901;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=740;QR=4657;RO=116;RPL=0;RPP=44.2683;RPPR=254.901;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=116;SRP=254.901;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:70:56,14:56:2254:14:567:-30.2993,0,-181.943 0/0:53:49,4:49:1970:4:133:0,-3.66614,-165.205 0/1:9:8,1:8:318:1:40:-1.28641,0,-26.2758 0/0:3:3,0:3:115:0:0:0,-0.90309,-10.7232 dDocent_Contig_16139 27 . C G 227.276 . AB=0.194444;ABP=61.3988;AC=4;AF=0.5;AN=8;AO=14;CIGAR=1X;DP=72;DPB=72;DPRA=0;EPP=33.4109;EPPR=120.42;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.896552;PAO=0;PQA=0;PQR=0;PRO=0;QA=547;QR=2286;RO=58;RPL=0;RPP=33.4109;RPPR=128.956;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=57;SRP=120.42;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:9,6:9:360:6:236:-17.0959,0,-28.2465 0/1:20:16,4:16:621:4:150:-7.84228,0,-50.1979 0/1:22:20,2:20:789:2:80:-0.968915,0,-64.6948 0/1:15:13,2:13:516:2:81:-3.17028,0,-42.2703 dDocent_Contig_16142 8 . C T 84.2531 . AB=0.192308;ABP=24.391;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X;DP=129;DPB=129;DPRA=1.1;EPP=22.5536;EPPR=263.587;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.5;PAO=0;PQA=0;PQR=0;PRO=0;QA=333;QR=4630;RO=120;RPL=0;RPP=22.5536;RPPR=263.587;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=120;SRP=263.587;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:21,5:21:813:5:192:-9.82323,0,-65.6681 0/0:30:30,0:30:1154:0:0:0,-9.0309,-104.16 0/0:47:45,2:45:1734:2:76:0,-6.93374,-149.101 0/0:26:24,2:24:929:2:65:0,-1.65349,-77.7522 dDocent_Contig_16143 9 . T A 696.38 . AB=0.0973451;ABP=162.143;AC=2;AF=0.25;AN=8;AO=11;CIGAR=1X3M1I18M;DP=124;DPB=128.182;DPRA=0;EPP=26.8965;EPPR=120.27;GTI=0;LEN=1;MEANALT=5.33333;MQM=41.1818;MQMR=60;NS=4;NUMALT=7;ODDS=0;PAIRED=0.181818;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=413;QR=2094;RO=54;RPL=0;RPP=26.8965;RPPR=120.27;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:35:21,4,2,0,2,0,3,0:21:826:4,2,0,2,0,3,0:148,81,0,81,0,121,0:-4.69881,0,-66.7471,-4.33546,-61.271,-71.6954,-11.0204,-67.9512,-72.2974,-78.9779,-4.33546,-61.271,-65.6168,-72.2974,-71.6954,-11.0204,-67.9512,-72.2974,-78.9779,-72.2974,-78.9779,-1.03713,-57.9755,-62.3211,-69.0018,-62.3211,-69.0018,-68.0987,-11.0204,-67.9512,-72.2974,-78.9779,-72.2974,-78.9779,-69.0018,-78.9779 1|0:16:1,6,5,2,1,0,0,0:1:39:6,5,2,1,0,0,0:228,185,80,41,0,0,0:-29.2188,-11.9074,-13.3075,-14.393,0,-16.0948,-22.9258,-8.52,-11.0051,-25.531,-26.1332,-11.7269,-14.2128,-22.7461,-29.0392,-29.5198,-15.1137,-17.5999,-26.133,-29.3403,-32.7266,-29.5198,-15.1137,-17.5999,-26.133,-29.3403,-32.7266,-32.7266,-29.5198,-15.1137,-17.5999,-26.133,-29.3403,-32.7266,-32.7266,-32.7266 0|0:62:28,1,10,0,1,9,3,10:28:1073:1,10,0,1,9,3,10:37,374,0,41,351,121,399:-24.4341,-30.1063,-117.858,-2.24705,-87.5399,-87.2868,-32.863,-118.159,-90.2971,-120.917,-29.4782,-114.775,-86.9126,-117.532,-117.231,-4.01561,-89.312,-61.45,-92.0692,-88.6846,-89.3599,-22.8873,-108.184,-80.3219,-110.941,-107.557,-82.0938,-110.038,0,-85.2983,-57.436,-88.0556,-84.671,-59.2075,-78.0801,-85.0453 0|0:11:4,0,0,0,0,6,0,0:4:156:0,0,0,0,6,0,0:0,0,0,0,241,0,0:-18.6736,-19.8777,-32.6973,-19.8777,-32.6973,-32.6973,-19.8777,-32.6973,-32.6973,-32.6973,-19.8777,-32.6973,-32.6973,-32.6973,-32.6973,0,-12.8306,-12.8306,-12.8306,-12.8306,-11.0244,-19.8777,-32.6973,-32.6973,-32.6973,-32.6973,-12.8306,-32.6973,-19.8777,-32.6973,-32.6973,-32.6973,-32.6973,-12.8306,-32.6973,-32.6973 dDocent_Contig_16144 209 . N G 74.9872 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=79;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:79:-7.49763,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_16145 34 . C T 199.043 . AB=0.212766;ABP=36.6912;AC=2;AF=0.25;AN=8;AO=10;CIGAR=1X;DP=65;DPB=65;DPRA=2.61111;EPP=24.725;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.981818;PAO=0;PQA=0;PQR=0;PRO=0;QA=407;QR=2213;RO=55;RPL=0;RPP=24.725;RPPR=122.441;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:21,8:21:847:8:326:-20.98,0,-67.8126 0/1:18:16,2:16:634:2:81:-2.26719,0,-51.9709 0/0:7:7,0:7:287:0:0:0,-2.10721,-26.2052 0/0:11:11,0:11:445:0:0:0,-3.31133,-40.4061 dDocent_Contig_16147 17 . C G 669.122 . AB=0.306818;ABP=31.5356;AC=4;AF=0.5;AN=8;AO=27;CIGAR=1X1M1X3M;DP=88;DPB=88;DPRA=0;EPP=53.2759;EPPR=83.3548;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.555556;PAIREDR=0.540541;PAO=0;PQA=0;PQR=0;PRO=0;QA=1034;QR=1425;RO=37;RPL=0;RPP=61.6401;RPPR=83.3548;RPR=27;RUN=1;SAF=26;SAP=53.2759;SAR=1;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:15:5,5,5:5:191:5,5:196,191:-14.618,0,-14.1659,-0.457917,-0.000930269,-14.6189 0|1:20:10,5,5:10:386:5,5:189,199:-13.3844,-0.914928,-31.0989,0,-16.2153,-30.1972 0|1:29:16,6,7:16:608:6,7:236,275:-17.7999,-3.20295,-51.2451,0,-30.4307,-47.7403 0|1:24:6,6,10:6:240:6,10:229,369:-28.3642,-11.3772,-29.3535,0,-0.996885,-16.7728 dDocent_Contig_16150 11 . G A 69.0375 . AB=0.125;ABP=81.1833;AC=2;AF=0.25;AN=8;AO=9;CIGAR=1X;DP=113;DPB=113;DPRA=0.965517;EPP=22.5536;EPPR=228.843;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.721154;PAO=0;PQA=0;PQR=0;PRO=0;QA=361;QR=4109;RO=104;RPL=0;RPP=22.5536;RPPR=228.843;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=104;SRP=228.843;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:29:29,0:29:1137:0:0:0,-8.72987,-102.604 0/1:15:12,3:12:468:3:119:-6.57956,0,-37.948 0/1:49:44,5:44:1741:5:201:-3.72005,0,-142.158 0/0:20:19,1:19:763:1:41:0,-1.92603,-64.8962 dDocent_Contig_16151 12 . T C 823.638 . AB=0.450704;ABP=4.50892;AC=4;AF=0.5;AN=8;AO=32;CIGAR=1X;DP=71;DPB=71;DPRA=0;EPP=72.4974;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.8125;PAIREDR=0.871795;PAO=0;PQA=0;PQR=0;PRO=0;QA=1219;QR=1500;RO=39;RPL=0;RPP=72.4974;RPPR=87.6977;RPR=32;RUN=1;SAF=32;SAP=72.4974;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:16,10:16:614:10:351:-24.0886,0,-47.7725 0/1:15:10,5:10:386:5:196:-13.4995,0,-30.5803 0/1:13:6,7:6:237:7:274:-21.1119,0,-17.7901 0/1:17:7,10:7:263:10:398:-31.0617,0,-18.9054 dDocent_Contig_16152 122 . T C 268.627 . AB=0.387097;ABP=6.44263;AC=1;AF=0.125;AN=8;AO=12;CIGAR=1X;DP=61;DPB=61;DPRA=3.1;EPP=29.068;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=414;QR=1707;RO=49;RPL=0;RPP=29.068;RPPR=109.412;RPR=12;RUN=1;SAF=0;SAP=29.068;SAR=12;SRF=0;SRP=109.412;SRR=49;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:19,12:19:678:12:414:-28.2595,0,-52.0171 0/0:28:28,0:28:958:0:0:0,-8.42884,-86.527 0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827 0/0:1:1,0:1:35:0:0:0,-0.30103,-3.49863 dDocent_Contig_16153 58 . T C 150.135 . AB=0;ABP=0;AC=2;AF=0.25;AN=8;AO=5;CIGAR=1X;DP=25;DPB=25;DPRA=3.16667;EPP=13.8677;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=59;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=195;QR=780;RO=20;RPL=5;RPP=13.8677;RPPR=46.4397;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:4:0,4:0:0:4:156:-14.4105,-1.20412,0 0/0:1:1,0:1:37:0:0:0,-0.30103,-3.69783 0/0:5:5,0:5:204:0:0:0,-1.50515,-18.744 0/0:15:14,1:14:539:1:39:0,-0.618885,-44.9589 dDocent_Contig_16154 13 . C T 165.276 . AB=0.28;ABP=13.5202;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=73;DPB=73;DPRA=1.21212;EPP=20.3821;EPPR=144.156;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.875;PAIREDR=0.584615;PAO=0;PQA=0;PQR=0;PRO=0;QA=320;QR=2632;RO=65;RPL=0;RPP=20.3821;RPPR=144.156;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=65;SRP=144.156;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:15:14,1:14:569:1:38:0,-0.718181,-47.7552 0/1:25:18,7:18:723:7:282:-18.2263,0,-57.8703 0/0:13:13,0:13:528:0:0:0,-3.91339,-47.866 0/0:20:20,0:20:812:0:0:0,-6.0206,-73.3955 dDocent_Contig_16155 12 . G A 294.486 . AB=0.625;ABP=4.09604;AC=3;AF=0.375;AN=8;AO=9;CIGAR=1X;DP=58;DPB=58;DPRA=0.26087;EPP=22.5536;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=361;QR=1956;RO=49;RPL=0;RPP=22.5536;RPPR=109.412;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:10:10,0:10:407:0:0:0,-3.0103,-36.9906 0/0:36:36,0:36:1429:0:0:0,-10.8371,-128.865 0/1:8:3,5:3:120:5:198:-15.788,0,-8.77907 1/1:4:0,4:0:0:4:163:-15.0584,-1.20412,0 dDocent_Contig_16156 65 . C T 518.75 . AB=0.463415;ABP=3.48696;AC=3;AF=0.375;AN=8;AO=19;CIGAR=1X;DP=48;DPB=48;DPRA=1.95238;EPP=44.2683;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=761;QR=1154;RO=29;RPL=19;RPP=44.2683;RPPR=65.983;RPR=0;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:4,10:4:161:10:400:-32.1451,0,-10.6609 0/1:18:14,4:14:552:4:164:-9.73136,0,-44.6016 0/1:9:4,5:4:162:5:197:-15.3965,0,-12.2577 0/0:7:7,0:7:279:0:0:0,-2.10721,-25.4788 dDocent_Contig_16157 28 . T C 1593.43 . AB=0.595506;ABP=10.0615;AC=4;AF=0.5;AN=8;AO=53;CIGAR=1X;DP=89;DPB=89;DPRA=0;EPP=118.098;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2133;QR=1416;RO=35;RPL=0;RPP=118.098;RPPR=79.0118;RPR=53;RUN=1;SAF=53;SAP=118.098;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:2,11:2:82:11:445:-36.4921,0,-3.86629 0/1:25:14,11:14:564:11:434:-31.885,0,-43.5753 0/1:27:9,17:9:367:17:685:-54.0353,0,-25.4377 0/1:24:10,14:10:403:14:569:-44.3275,0,-29.4055 dDocent_Contig_16158 44 . A G 45.8855 . AB=0.2;ABP=14.7363;AC=2;AF=0.25;AN=8;AO=3;CIGAR=1X;DP=53;DPB=53;DPRA=0.394737;EPP=9.52472;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=123;QR=2018;RO=50;RPL=0;RPP=9.52472;RPPR=111.584;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:23:23,0:23:919:0:0:0,-6.92369,-83.015 0/1:5:3,2:3:123:2:82:-6.27453,0,-9.95964 0/1:10:9,1:9:363:1:41:-1.08427,0,-30.0244 0/0:15:15,0:15:613:0:0:0,-4.51545,-55.5068 dDocent_Contig_16159 12 . T A 81.1839 . AB=0.5;ABP=3.0103;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=27;DPB=27;DPRA=0.857143;EPP=9.52472;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=51;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=123;QR=968;RO=24;RPL=0;RPP=9.52472;RPPR=55.1256;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:6:3,3:3:121:3:123:-9.51629,0,-9.47402 0/0:6:6,0:6:246:0:0:0,-1.80618,-22.5201 0/0:9:9,0:9:357:0:0:0,-2.70927,-32.4898 0/0:6:6,0:6:244:0:0:0,-1.80618,-22.3388 dDocent_Contig_16160 10 . A G 291.45 . AB=0.333333;ABP=11.6962;AC=2;AF=0.5;AN=4;AO=12;CIGAR=1X;DP=36;DPB=36;DPRA=0;EPP=29.068;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=477;QR=966;RO=24;RPL=0;RPP=29.068;RPPR=55.1256;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:6,7:6:245:7:273:-21.0236,0,-18.5161 0/1:23:18,5:18:721:5:204:-11.8203,0,-58.2915 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_16163 86 . A T 74.9245 . AB=0.285714;ABP=8.59409;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X1M1X;DP=55;DPB=55;DPRA=1.02439;EPP=11.6962;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.764706;PAO=0;PQA=0;PQR=0;PRO=0;QA=145;QR=1911;RO=51;RPL=4;RPP=11.6962;RPPR=4.07475;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=23;SRP=4.07475;SRR=28;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:15:15,0:15:570:0:0:0,-4.51545,-51.6363 0|0:3:3,0:3:105:0:0:0,-0.90309,-9.79609 0|0:23:23,0:23:852:0:0:0,-6.92369,-76.9955 0|1:14:10,4:10:384:4:145:-9.19129,0,-30.6994 dDocent_Contig_16164 94 . G A 34.6791 . AB=0.166667;ABP=26.1727;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=64;DPB=64;DPRA=1.8;EPP=11.6962;EPPR=133.299;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=0.833333;PAO=0;PQA=0;PQR=0;PRO=0;QA=134;QR=2119;RO=60;RPL=4;RPP=11.6962;RPPR=3.15506;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=29;SRP=3.15506;SRR=31;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:12:12,0:12:422:0:0:0,-3.61236,-38.3159 0/0:27:27,0:27:957:0:0:0,-8.12781,-86.4469 0/1:24:20,4:20:705:4:134:-5.16616,0,-56.5508 0/0:1:1,0:1:35:0:0:0,-0.30103,-3.49863 dDocent_Contig_16165 26 . T C 1163.83 . AB=0.476744;ABP=3.41429;AC=4;AF=0.5;AN=8;AO=41;CIGAR=1X;DP=86;DPB=86;DPRA=0;EPP=92.0407;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1647;QR=1769;RO=45;RPL=0;RPP=92.0407;RPPR=100.727;RPR=41;RUN=1;SAF=41;SAP=92.0407;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:11,15:11:431:15:596:-46.1532,0,-31.3157 0/1:7:4,3:4:161:3:122:-9.26528,0,-12.7677 0/1:26:15,11:15:575:11:448:-32.8492,0,-44.2505 0/1:27:15,12:15:602:12:481:-35.5131,0,-46.3905 dDocent_Contig_16166 63 . G A 221.798 . AB=0;ABP=0;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=31;DPB=31;DPRA=0.48;EPP=16.0391;EPPR=48.9587;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.92;PAO=0;PQA=0;PQR=0;PRO=0;QA=237;QR=881;RO=25;RPL=6;RPP=16.0391;RPPR=57.2971;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=24;SRP=48.9587;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:6:0,6:0:0:6:237:-21.7026,-1.80618,0 0/0:11:11,0:11:381:0:0:0,-3.31133,-34.6103 0/0:14:14,0:14:500:0:0:0,-4.21442,-45.3271 ./.:.:.:.:.:.:.:. dDocent_Contig_16168 40 . G T 59.9352 . AB=0.272727;ABP=7.94546;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=32;DPB=32;DPRA=1.57143;EPP=9.52472;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.793103;PAO=0;PQA=0;PQR=0;PRO=0;QA=118;QR=1160;RO=29;RPL=0;RPP=9.52472;RPPR=65.983;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:19:19,0:19:760:0:0:0,-5.71957,-68.7235 0/1:11:8,3:8:318:3:118:-7.69139,0,-25.6743 0/0:1:1,0:1:41:0:0:0,-0.30103,-4.09457 0/0:1:1,0:1:41:0:0:0,-0.30103,-4.09457 dDocent_Contig_16170 13 . T C 2589.57 . AB=0.427907;ABP=12.7163;AC=4;AF=0.5;AN=8;AO=92;CIGAR=1X;DP=215;DPB=215;DPRA=0;EPP=202.786;EPPR=270.101;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3665;QR=4870;RO=123;RPL=0;RPP=202.786;RPPR=270.101;RPR=92;RUN=1;SAF=92;SAP=202.786;SAR=0;SRF=123;SRP=270.101;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:84:42,42:42:1692:42:1672:-125.42,0,-127.217 0/1:71:45,26:45:1742:26:1032:-71.8016,0,-135.639 0/1:45:30,15:30:1195:15:600:-40.7935,0,-94.2796 0/1:15:6,9:6:241:9:361:-28.339,0,-17.5497 dDocent_Contig_16171 15 . T C 131.26 . AB=0.384615;ABP=4.51363;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=29;DPB=29;DPRA=1.625;EPP=13.8677;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=0.791667;PAO=0;PQA=0;PQR=0;PRO=0;QA=202;QR=975;RO=24;RPL=0;RPP=13.8677;RPPR=55.1256;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:8,5:8:321:5:202:-14.6485,0,-25.3447 0/0:2:2,0:2:82:0:0:0,-0.60206,-7.77968 0/0:14:14,0:14:572:0:0:0,-4.21442,-51.8216 ./.:.:.:.:.:.:.:. dDocent_Contig_16172 12 . C A 744.14 . AB=0.209677;ABP=48.4011;AC=2;AF=0.25;AN=8;AO=13;CIGAR=1X1M1X;DP=62;DPB=62;DPRA=0;EPP=31.2394;EPPR=63.8115;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=495;QR=1105;RO=28;RPL=0;RPP=31.2394;RPPR=63.8115;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:18:8,2,8:8:319:2,8:77,313:-23.3282,-19.4162,-45.0864,0,-19.9607,-23.8712 0|0:26:16,2,8:16:632:2,8:72,321:-21.665,-20.6171,-72.0142,0,-46.1656,-49.626 0|1:11:4,5,2:4:154:5,2:185,82:-13.8991,0,-11.1219,-8.32367,-5.85064,-20.3719 1|0:7:0,4,3:0:0:4,3:161,113:-22.9197,-9.63591,-8.43179,-13.6712,0,-12.7681 dDocent_Contig_16174 7 . A T 80.0608 . AB=0;ABP=0;AC=2;AF=0.25;AN=8;AO=2;CIGAR=1X;DP=21;DPB=21;DPRA=0.315789;EPP=7.35324;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=78;QR=715;RO=19;RPL=0;RPP=7.35324;RPPR=44.2683;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:78:-7.40347,-0.60206,0 0/0:7:7,0:7:256:0:0:0,-2.10721,-23.3917 0/0:10:10,0:10:381:0:0:0,-3.0103,-34.6439 0/0:2:2,0:2:78:0:0:0,-0.60206,-7.40347 dDocent_Contig_16175 80 . G T 40.4685 . AB=0.157895;ABP=22.325;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=54;DPB=54;DPRA=1.62857;EPP=9.52472;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=0;PAIREDR=0.784314;PAO=0;PQA=0;PQR=0;PRO=0;QA=123;QR=2006;RO=51;RPL=3;RPP=9.52472;RPPR=8.16222;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=31;SRP=8.16222;SRR=20;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:27:27,0:27:1062:0:0:0,-8.12781,-95.8764 0/1:19:16,3:16:626:3:123:-5.74522,0,-50.9576 0/0:1:1,0:1:40:0:0:0,-0.30103,-3.99568 0/0:7:7,0:7:278:0:0:0,-2.10721,-25.3909 dDocent_Contig_16176 39 . C T 864.885 . AB=0.319588;ABP=30.4335;AC=4;AF=0.5;AN=8;AO=31;CIGAR=1X2M;DP=97;DPB=97;DPRA=0;EPP=70.3259;EPPR=57.2971;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.387097;PAIREDR=0.72;PAO=0;PQA=0;PQR=0;PRO=0;QA=1226;QR=995;RO=25;RPL=0;RPP=70.3259;RPPR=57.2971;RPR=31;RUN=1;SAF=31;SAP=70.3259;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:36:6,16,14:6:232:16,14:627,557:-44.1768,-31.5199,-45.7556,0,-4.70382,-14.9096 0|1:20:3,11,6:3:122:11,6:413,236:-18.6163,-14.183,-20.9394,0,-4.84725,-8.32495 0|1:30:11,12,7:11:444:12,7:465,282:-20.0327,-13.1101,-46.0997,0,-26.4688,-34.625 0|1:11:5,2,4:5:197:2,4:77,151:-11.0607,-11.6444,-27.2589,0,-15.4939,-15.2202 dDocent_Contig_16177 13 . G C 185.774 . AB=0.4;ABP=4.74748;AC=3;AF=0.375;AN=8;AO=8;CIGAR=1X;DP=25;DPB=25;DPRA=1.33333;EPP=20.3821;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.882353;PAO=0;PQA=0;PQR=0;PRO=0;QA=320;QR=681;RO=17;RPL=0;RPP=20.3821;RPPR=39.9253;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:9,6:9:359:6:238:-17.2776,0,-28.1565 0/0:5:5,0:5:204:0:0:0,-1.50515,-18.744 0/1:3:2,1:2:77:1:41:-3.19148,0,-6.40511 0/1:2:1,1:1:41:1:41:-3.49251,0,-3.49251 dDocent_Contig_16178 24 . A C 217.036 . AB=0.210526;ABP=44.4969;AC=3;AF=0.375;AN=8;AO=12;CIGAR=1X;DP=80;DPB=80;DPRA=0.826087;EPP=29.068;EPPR=150.67;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.916667;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=479;QR=2694;RO=68;RPL=0;RPP=29.068;RPPR=150.67;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=68;SRP=150.67;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:12,3:12:477:3:122:-6.85704,0,-38.7639 0/1:24:19,5:19:748:5:197:-10.8801,0,-60.4118 0/1:18:14,4:14:555:4:160:-9.36438,0,-44.8692 0/0:23:23,0:23:914:0:0:0,-6.92369,-82.5599 dDocent_Contig_16179 21 . C T 240.805 . AB=0.344828;ABP=9.07545;AC=2;AF=0.25;AN=8;AO=10;CIGAR=1X;DP=43;DPB=43;DPRA=2.07143;EPP=24.725;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=394;QR=1317;RO=33;RPL=0;RPP=24.725;RPPR=74.6689;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5,0:5:204:0:0:0,-1.50515,-18.744 0/1:16:11,5:11:431:5:200:-13.5626,0,-34.3212 0/1:13:8,5:8:319:5:194:-13.9158,0,-25.1615 0/0:9:9,0:9:363:0:0:0,-2.70927,-33.0344 dDocent_Contig_16180 71 . T A 266.585 . AB=0.578947;ABP=4.03889;AC=1;AF=0.125;AN=8;AO=13;CIGAR=1X;DP=59;DPB=59;DPRA=6.375;EPP=31.2394;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=447;QR=1658;RO=46;RPL=13;RPP=31.2394;RPPR=102.898;RPR=0;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752 0/0:5:5,0:5:181:0:0:0,-1.50515,-16.6436 0/1:19:8,11:8:295:11:375:-28.3573,0,-21.1837 0/0:32:30,2:30:1074:2:72:0,-2.79624,-90.1361 dDocent_Contig_16181 1 . N G 106.472 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=28;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=158;QR=0;RO=0;RPL=0;RPP=11.6962;RPPR=0;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:118:-8.74105,-0.90309,0 ./.:.:.:.:.:.:.:. 1/1:1:0,1:0:0:1:40:-1.59832,-0.30103,0 dDocent_Contig_16182 12 . T A 371.635 . AB=0.448276;ABP=3.68421;AC=2;AF=0.25;AN=8;AO=14;CIGAR=1X;DP=64;DPB=64;DPRA=21;EPP=33.4109;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=570;QR=2006;RO=50;RPL=0;RPP=33.4109;RPPR=111.584;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:34:33,1:33:1321:1:41:0,-6.14045,-115.057 0/1:10:1,9:1:41:9:367:-30.385,0,-1.08427 0/1:19:15,4:15:608:4:162:-9.24718,0,-49.3384 0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827 dDocent_Contig_16183 10 . A G 314.62 . AB=0.192771;ABP=71.0585;AC=3;AF=0.375;AN=8;AO=16;CIGAR=4M1X3M;DP=99;DPB=94.5;DPRA=0;EPP=37.7539;EPPR=157.185;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=0.647887;PAO=0;PQA=0;PQR=0;PRO=0;QA=623;QR=2746;RO=71;RPL=0;RPP=37.7539;RPPR=157.185;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=71;SRP=157.185;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:32:24,4,0,4:24:936:4,0,4:114,0,162:-6.19324,-4.42826,-80.1514,-13.418,-81.3555,-90.3917,0,-67.9953,-77.0298,-75.8257 0|1:21:11,3,0,7:11:418:3,0,7:81,0,270:-18.9394,-15.9022,-49.2747,-22.2507,-50.1778,-56.545,0,-28.0057,-34.3654,-32.2582 0|1:30:23,1,1,5:23:888:1,1,5:37,38,191:-8.75034,-12.6487,-85.2797,-12.5575,-82.4644,-85.1899,0,-69.9123,-69.8224,-71.4335 0|0:16:13,0,3,0:13:504:0,3,0:0,105,0:-4.9769,-8.89029,-50.3285,0,-41.795,-40.8919,-8.89029,-50.3285,-41.795,-50.3285 dDocent_Contig_16184 33 . C T 105.851 . AB=0.3125;ABP=7.89611;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=64;DPB=64;DPRA=1;EPP=13.8677;EPPR=131.127;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.847458;PAO=0;PQA=0;PQR=0;PRO=0;QA=186;QR=2279;RO=59;RPL=0;RPP=13.8677;RPPR=131.127;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=59;SRP=131.127;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:26:26,0:26:1013:0:0:0,-7.82678,-91.4645 0/0:16:16,0:16:627:0:0:0,-4.81648,-56.7625 0/1:16:11,5:11:405:5:186:-12.284,0,-31.9764 0/0:6:6,0:6:234:0:0:0,-1.80618,-21.429 dDocent_Contig_16186 9 . T C 86.9802 . AB=0.1875;ABP=30.1537;AC=2;AF=0.25;AN=8;AO=7;CIGAR=1X;DP=62;DPB=62;DPRA=10;EPP=18.2106;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=272;QR=2099;RO=55;RPL=0;RPP=18.2106;RPPR=122.441;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:19,3:19:737:3:117:-4.28772,0,-60.0386 0/1:10:7,3:7:270:3:116:-7.8074,0,-21.6552 0/0:28:27,1:27:1014:1:39:0,-4.53228,-87.667 0/0:2:2,0:2:78:0:0:0,-0.60206,-7.40347 dDocent_Contig_16187 41 . C T 391.418 . AB=0.283333;ABP=27.4756;AC=3;AF=0.375;AN=8;AO=18;CIGAR=1X;DP=74;DPB=74;DPRA=0;EPP=42.0968;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.777778;PAIREDR=0.625;PAO=0;PQA=0;PQR=0;PRO=0;QA=724;QR=2225;RO=56;RPL=0;RPP=42.0968;RPPR=124.613;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:32:26,6:26:1031:6:244:-12.7059,0,-83.4502 0/0:14:13,1:13:528:1:41:0,-0.119853,-43.7719 0/1:20:14,6:14:544:6:236:-15.5882,0,-43.2727 0/1:8:3,5:3:122:5:203:-16.2448,0,-8.96425 dDocent_Contig_16188 98 . A C 103.767 . AB=0;ABP=0;AC=2;AF=0.25;AN=8;AO=3;CIGAR=1X;DP=16;DPB=16;DPRA=0.692308;EPP=9.52472;EPPR=31.2394;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=108;QR=470;RO=13;RPL=0;RPP=9.52472;RPPR=31.2394;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=31.2394;SRR=13;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:1:1,0:1:37:0:0:0,-0.30103,-3.69783 0/0:5:5,0:5:174:0:0:0,-1.50515,-16.0011 0/0:7:7,0:7:259:0:0:0,-2.10721,-23.6652 1/1:3:0,3:0:0:3:108:-10.0749,-0.90309,0 dDocent_Contig_16189 43 . T C 148.192 . AB=0.214286;ABP=32.7905;AC=3;AF=0.375;AN=8;AO=9;CIGAR=1X;DP=54;DPB=54;DPRA=1.16667;EPP=22.5536;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.666667;PAIREDR=0.8;PAO=0;PQA=0;PQR=0;PRO=0;QA=352;QR=1822;RO=45;RPL=0;RPP=22.5536;RPPR=100.727;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:4:1,3:1:41:3:109:-8.96119,0,-2.89045 0/1:29:26,3:26:1051:3:121:-2.55033,0,-86.1487 0/1:9:6,3:6:245:3:122:-8.66322,0,-19.7202 0/0:12:12,0:12:485:0:0:0,-3.61236,-43.9996 dDocent_Contig_16190 8 . C G 199.892 . AB=0.238095;ABP=15.5221;AC=6;AF=0.75;AN=8;AO=8;CIGAR=1X3M1X;DP=24;DPB=24;DPRA=0;EPP=20.3821;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=313;QR=633;RO=16;RPL=0;RPP=20.3821;RPPR=37.7539;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:1:0,1:0:0:1:39:-3.89656,-0.30103,0 1|1:2:0,2:0:0:2:79:-7.49763,-0.60206,0 0|1:13:10,3:10:399:3:117:-6.99682,0,-32.3571 0|1:8:6,2:6:234:2:78:-4.99523,0,-19.0222 dDocent_Contig_16191 107 . N A 371.059 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=12;CIGAR=1X;DP=12;DPB=12;DPRA=0;EPP=29.068;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=396;QR=0;RO=0;RPL=0;RPP=29.068;RPPR=0;RPR=12;RUN=1;SAF=0;SAP=29.068;SAR=12;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:10:0,10:0:0:10:329:-29.9293,-3.0103,0 1/1:1:0,1:0:0:1:32:-3.19931,-0.30103,0 1/1:1:0,1:0:0:1:35:-3.49863,-0.30103,0 ./.:.:.:.:.:.:.:. dDocent_Contig_16192 48 . T G 47.6475 . AB=0.1875;ABP=16.582;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=76;DPB=76;DPRA=0.8;EPP=9.52472;EPPR=161.528;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=8.67362e-19;PAIRED=0;PAIREDR=0.808219;PAO=0;PQA=0;PQR=0;PRO=0;QA=121;QR=2916;RO=73;RPL=0;RPP=9.52472;RPPR=161.528;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=73;SRP=161.528;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:25:25,0:25:1003:0:0:0,-7.52575,-90.5642 0/1:16:13,3:13:520:3:121:-6.46372,0,-42.3301 0/0:22:22,0:22:879:0:0:0,-6.62266,-79.4219 0/0:13:13,0:13:514:0:0:0,-3.91339,-46.6028 dDocent_Contig_16193 25 . A G 8591.22 . AB=0.0761523;ABP=781.646;AC=0;AF=0;AN=8;AO=38;CIGAR=1M3X;DP=499;DPB=402.25;DPRA=0;EPP=54.4399;EPPR=152.842;GTI=0;LEN=1;MEANALT=3.25;MQM=23.1053;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.710526;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1478;QR=2755;RO=69;RPL=0;RPP=85.5263;RPPR=152.842;RPR=38;RUN=1;SAF=34;SAP=54.4399;SAR=4;SRF=69;SRP=152.842;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:207:35,160,12:35:1400:160,12:6373,462:-380.367,0,-67.2686,-367.188,-91.7527,-478.917 0|0:117:9,92,16:9:356:92,16:3651,628:-214.7,0,-1.66759,-192.634,-4.69489,-217.121 0|0:112:16,78,8:16:642:78,8:3105,311:-167.849,0,-29.5201,-159.627,-39.9793,-210.137 0|0:63:9,48,2:9:357:48,2:1916,77:-103.225,0,-15.0384,-101.239,-24.7989,-130.041 dDocent_Contig_16194 4 . T C 135.199 . AB=0.164474;ABP=151.642;AC=1;AF=0.125;AN=8;AO=42;CIGAR=7I2M1X;DP=434;DPB=532;DPRA=0;EPP=94.2121;EPPR=854.227;GTI=0;LEN=1;MEANALT=1;MQM=36.5714;MQMR=56.8699;NS=4;NUMALT=1;ODDS=0;PAIRED=0.357143;PAIREDR=0.994898;PAO=0;PQA=0;PQR=0;PRO=0;QA=1454;QR=14380;RO=392;RPL=0;RPP=94.2121;RPPR=854.227;RPR=42;RUN=1;SAF=42;SAP=94.2121;SAR=0;SRF=392;SRP=854.227;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:152:127,25:127:4673:25:866:-14.9178,0,-356.041 0|0:139:130,9:130:4756:9:314:0,-23.0841,-401.756 0|0:95:88,7:88:3233:7:239:0,-11.8494,-272.376 0|0:48:47,1:47:1718:1:35:0,-10.9508,-151.351 dDocent_Contig_16195 27 . C T 176.823 . AB=0.165049;ABP=103.383;AC=1;AF=0.125;AN=8;AO=55;CIGAR=1X;DP=773;DPB=773;DPRA=0;EPP=122.441;EPPR=1559.96;GTI=0;LEN=1;MEANALT=1.25;MQM=37.7091;MQMR=53.8173;NS=4;NUMALT=1;ODDS=0;PAIRED=0.727273;PAIREDR=0.663877;PAO=0;PQA=0;PQR=0;PRO=0;QA=2174;QR=28551;RO=717;RPL=0;RPP=122.441;RPPR=1559.96;RPR=55;RUN=1;SAF=55;SAP=122.441;SAR=0;SRF=717;SRP=1559.96;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:305:280,25:280:11171:25:990:0,-19.0628,-904.084 0/0:254:243,10:243:9688:10:403:0,-49.0358,-820.512 0/0:111:108,3:108:4278:3:106:0,-23.9277,-362.819 0/1:103:86,17:86:3414:17:675:-19.3812,0,-269.951 dDocent_Contig_16196 20 . G T 619.398 . AB=0.5;ABP=3.0103;AC=3;AF=0.375;AN=8;AO=19;CIGAR=1X;DP=49;DPB=49;DPRA=0.75;EPP=44.2683;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=744;QR=1172;RO=30;RPL=0;RPP=44.2683;RPPR=68.1545;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:19:19,0:19:769:0:0:0,-5.71957,-69.5308 1/1:19:1,18:1:41:18:704:-59.589,-1.625,0 0/0:9:9,0:9:339:0:0:0,-2.70927,-30.8599 0/1:2:1,1:1:23:1:40:-3.39362,0,-1.69785 dDocent_Contig_16197 78 . G C 37.4456 . AB=0.5;ABP=3.0103;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=34;DPB=34;DPRA=1.61538;EPP=9.52472;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=105;QR=1053;RO=31;RPL=3;RPP=9.52472;RPPR=70.3259;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:17:16,1:16:545:1:35:0,-1.61888,-45.8749 0/0:9:9,0:9:308:0:0:0,-2.70927,-28.0525 0/0:4:4,0:4:133:0:0:0,-1.20412,-12.2988 0/1:4:2,2:2:67:2:70:-5.44328,0,-5.15892 dDocent_Contig_16198 12 . G A 55.0682 . AB=0.2;ABP=18.6449;AC=2;AF=0.25;AN=8;AO=4;CIGAR=1X;DP=35;DPB=35;DPRA=1.33333;EPP=11.6962;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.935484;PAO=0;PQA=0;PQR=0;PRO=0;QA=157;QR=1231;RO=31;RPL=0;RPP=11.6962;RPPR=70.3259;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:13,3:13:514:3:116:-6.00054,0,-41.7884 0/1:4:3,1:3:120:1:41:-2.89045,0,-9.98319 0/0:7:7,0:7:272:0:0:0,-2.10721,-24.844 0/0:8:8,0:8:325:0:0:0,-2.40824,-29.6196 dDocent_Contig_16199 107 . N T 244.987 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=8;CIGAR=1X;DP=8;DPB=8;DPRA=0;EPP=20.3821;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=262;QR=0;RO=0;RPL=0;RPP=20.3821;RPPR=0;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:7:0,7:0:0:7:233:-21.2966,-2.10721,0 1/1:1:0,1:0:0:1:29:-2.89966,-0.30103,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_16200 19 . C T 1084.3 . AB=0.0505618;ABP=315.312;AC=0;AF=0;AN=8;AO=9;CIGAR=6M1X3M1D15M2X1M;DP=233;DPB=231.724;DPRA=0;EPP=22.5536;EPPR=100.727;GTI=0;LEN=1;MEANALT=14;MQM=29;MQMR=60;NS=4;NUMALT=9;ODDS=0;PAIRED=0;PAIREDR=0.888889;PAO=0;PQA=0;PQR=0;PRO=0;QA=261;QR=1754;RO=45;RPL=0;RPP=22.5536;RPPR=100.727;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:91:9,5,4,20,0,5,13,4,8,3:9:348:5,4,20,0,5,13,4,8,3:131,148,782,0,187,408,116,296,81:-61.1168,-54.8978,-81.9837,-52.7918,-72.4553,-80.1792,-2.61492,-22.283,-20.176,-25.1905,-63.826,-83.4888,-81.3833,-31.2111,-92.417,-48.5475,-68.2113,-66.1055,-15.9311,-77.1394,-75.6342,-32.6169,-52.282,-50.1754,0,-61.2092,-45.9311,-57.2958,-55.675,-75.3384,-73.2325,-23.06,-84.2662,-68.9885,-53.0589,-83.062,-39.8795,-59.5439,-57.4379,-7.2622,-68.472,-53.1937,-37.2634,-60.3211,-66.0638,-58.2531,-77.9162,-75.8105,-25.6382,-86.8441,-71.5665,-55.6368,-78.6935,-62.8991,-85.941 0|0:55:18,0,0,2,3,7,7,0,2,1:18:699:0,0,2,3,7,7,0,2,1:0,0,76,97,235,171,0,68,40:-12.2893,-17.7079,-75.1891,-17.7079,-75.1891,-75.1891,-11.6776,-69.163,-69.163,-68.561,-10.6883,-68.1738,-68.1738,-62.1476,-67.2707,0,-57.4943,-57.4943,-51.4676,-50.4787,-55.3871,-5.83796,-63.3242,-63.3242,-57.2981,-56.3095,-45.6305,-61.217,-17.7079,-75.1891,-75.1891,-69.163,-68.1738,-57.4943,-63.3242,-75.1891,-12.1873,-69.6722,-69.6722,-63.6459,-62.6568,-51.9769,-57.8074,-69.6722,-69.0701,-14.4085,-71.892,-71.892,-65.8658,-64.8766,-54.1968,-60.027,-71.892,-66.375,-71.591 0|0:54:13,0,3,1,0,12,6,4,2,4:13:513:0,3,1,0,12,6,4,2,4:0,106,35,0,363,131,116,75,97:-23.5314,-27.4448,-69.6846,-19.4525,-61.6952,-60.7921,-24.6515,-66.8923,-58.9029,-66.5913,-27.4448,-69.6846,-61.6952,-66.8923,-69.6846,0,-42.2501,-34.2605,-39.4577,-42.2501,-38.6377,-18.836,-61.0758,-53.0871,-58.2837,-61.0758,-33.6465,-59.2696,-19.293,-61.5348,-53.5455,-58.7426,-61.5348,-34.1018,-52.9277,-60.3307,-21.3127,-63.555,-55.5653,-60.7626,-63.555,-36.1198,-54.9464,-55.4051,-62.9529,-20.8929,-63.1335,-55.1444,-60.3413,-63.1335,-35.7015,-54.5268,-54.9846,-57.0039,-61.9293 0|0:33:5,0,0,7,1,1,5,1,5,0:5:194:0,0,7,1,1,5,1,5,0:0,0,263,37,25,137,29,175,0:-18.8884,-20.3936,-36.3506,-20.3936,-36.3506,-36.3506,0,-15.968,-15.968,-13.8608,-17.6327,-33.5908,-33.5908,-13.2068,-33.2897,-18.7166,-34.6739,-34.6739,-14.2911,-31.9141,-34.3729,-10.1557,-26.116,-26.116,-5.72991,-23.3559,-24.4398,-24.6108,-18.3555,-34.313,-34.313,-13.9298,-31.5531,-32.6364,-24.0787,-34.012,-6.1368,-22.1005,-22.1005,-1.70916,-19.3399,-20.4237,-11.8641,-20.0626,-20.5953,-20.3936,-36.3506,-36.3506,-15.968,-33.5908,-34.6739,-26.116,-34.313,-22.1005,-36.3506 dDocent_Contig_16201 8 . C G 81.9981 . AB=0.227273;ABP=17.2236;AC=2;AF=0.25;AN=8;AO=5;CIGAR=1X;DP=28;DPB=28;DPRA=3.66667;EPP=13.8677;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=194;QR=894;RO=23;RPL=0;RPP=13.8677;RPPR=52.9542;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:8,2:8:311:2:77:-4.29884,0,-25.344 0/0:2:2,0:2:78:0:0:0,-0.60206,-7.40347 0/1:12:9,3:9:349:3:117:-7.29802,0,-28.1584 0/0:4:4,0:4:156:0:0:0,-1.20412,-14.4173 dDocent_Contig_16202 32 . A T 72.991 . AB=0.227273;ABP=17.2236;AC=3;AF=0.375;AN=8;AO=6;CIGAR=1X;DP=42;DPB=42;DPRA=0;EPP=16.0391;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=241;QR=1444;RO=36;RPL=0;RPP=16.0391;RPPR=81.1833;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:20:19,1:19:769:1:41:0,-1.92603,-65.4337 0/1:10:7,3:7:276:3:118:-7.99128,0,-22.1967 0/1:7:6,1:6:237:1:41:-1.98736,0,-19.5941 0/1:5:4,1:4:162:1:41:-2.58942,0,-13.4616 dDocent_Contig_16203 40 . G A 843.723 . AB=0.415584;ABP=7.77626;AC=4;AF=0.5;AN=8;AO=32;CIGAR=1X;DP=77;DPB=77;DPRA=0;EPP=72.4974;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.955556;PAO=0;PQA=0;PQR=0;PRO=0;QA=1261;QR=1777;RO=45;RPL=0;RPP=72.4974;RPPR=100.727;RPR=32;RUN=1;SAF=32;SAP=72.4974;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:10,10:10:390:10:385:-28.9801,0,-29.4361 0/1:25:17,8:17:681:8:324:-22.0031,0,-54.0957 0/1:18:7,11:7:280:11:432:-33.8137,0,-20.1528 0/1:14:11,3:11:426:3:120:-6.97327,0,-34.4742 dDocent_Contig_16205 42 . A G 85.6186 . AB=0.2;ABP=26.4622;AC=2;AF=0.25;AN=8;AO=6;CIGAR=1X;DP=70;DPB=70;DPRA=0.75;EPP=16.0391;EPPR=141.985;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.90625;PAO=0;PQA=0;PQR=0;PRO=0;QA=225;QR=2508;RO=64;RPL=0;RPP=16.0391;RPPR=141.985;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=64;SRP=141.985;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:20,4:20:798:4:144:-6.08015,0,-64.9133 0/1:6:4,2:4:160:2:81:-5.87955,0,-12.9767 0/0:36:36,0:36:1397:0:0:0,-10.8371,-125.992 0/0:4:4,0:4:153:0:0:0,-1.20412,-14.137 dDocent_Contig_16206 47 . G A 41.8088 . AB=0.285714;ABP=5.80219;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X;DP=46;DPB=46;DPRA=0.538462;EPP=7.35324;EPPR=90.0666;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=58.8182;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.704545;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=1740;RO=44;RPL=0;RPP=7.35324;RPPR=81.9729;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=43;SRP=90.0666;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:7:5,2:5:202:2:81:-5.57852,0,-16.2632 0/0:2:2,0:2:71:0:0:0,-0.60206,-6.73943 0/0:17:17,0:17:671:0:0:0,-5.11751,-60.7181 0/0:20:20,0:20:796:0:0:0,-6.0206,-71.6429 dDocent_Contig_16207 17 . T G 491.466 . AB=0.363636;ABP=11.8936;AC=2;AF=0.25;AN=8;AO=20;CIGAR=2X3M1X;DP=77;DPB=77;DPRA=2.5;EPP=46.4397;EPPR=126.784;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.754386;PAO=0;PQA=0;PQR=0;PRO=0;QA=760;QR=2236;RO=57;RPL=0;RPP=46.4397;RPPR=126.784;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:17:10,7:10:387:7:266:-19.182,0,-30.0676 0|0:11:11,0:11:430:0:0:0,-3.31133,-39.0514 0|1:38:25,13:25:992:13:494:-33.3625,0,-78.1455 0|0:11:11,0:11:427:0:0:0,-3.31133,-38.7814 dDocent_Contig_16208 164 . T A 54.5081 . AB=0.214286;ABP=12.937;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=23;DPB=23;DPRA=3.11111;EPP=9.52472;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=120;QR=734;RO=20;RPL=3;RPP=9.52472;RPPR=46.4397;RPR=0;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=46.4397;SRR=20;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:11,3:11:421:3:120:-6.97348,0,-34.0266 ./.:.:.:.:.:.:.:. 0/0:6:6,0:6:210:0:0:0,-1.80618,-19.2393 0/0:3:3,0:3:103:0:0:0,-0.90309,-9.60885 dDocent_Contig_16209 22 . T A 199.004 . AB=0.466667;ABP=3.15506;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=52;DPB=52;DPRA=1.21622;EPP=18.2106;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=37.4;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.4;PAO=0;PQA=0;PQR=0;PRO=0;QA=286;QR=1815;RO=45;RPL=0;RPP=18.2106;RPPR=100.727;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:6:6,0:6:236:0:0:0,-1.80618,-14.5019 0/0:9:9,0:9:361:0:0:0,-2.70927,-32.8541 0/0:22:22,0:22:893:0:0:0,-6.62266,-54.3215 0/1:15:8,7:8:325:7:286:-21.5994,0,-13.9348 dDocent_Contig_16210 59 . T G 371.815 . AB=0.225;ABP=29.2851;AC=4;AF=0.5;AN=8;AO=9;CIGAR=1X4M;DP=58;DPB=64;DPRA=0;EPP=22.5536;EPPR=76.8404;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.444444;PAIREDR=0.411765;PAO=0;PQA=0;PQR=0;PRO=0;QA=346;QR=1312;RO=34;RPL=9;RPP=22.5536;RPPR=76.8404;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:18:15,3,0:15:569:3,0:114,0:-5.21368,0,-46.1295,-9.72913,-47.0326,-56.3822 0|1:16:7,7,2:7:275:7,2:272,81:-20.2298,0,-20.502,-15.6542,-15.9273,-37.6728 0|1:15:9,3,3:9:354:3,3:114,103:-6.6572,0,-28.2544,-1.02594,-20.8111,-29.2529 0|1:9:3,2,4:3:114:2,4:77,162:-12.4685,-7.05606,-15.7921,0,-3.02162,-8.14159 dDocent_Contig_16211 9 . G A 1131.3 . AB=0.278351;ABP=85.7949;AC=4;AF=0.5;AN=8;AO=54;CIGAR=1X;DP=194;DPB=194;DPRA=0;EPP=120.27;EPPR=307.016;GTI=0;LEN=1;MEANALT=1;MQM=52.3148;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.759259;PAIREDR=0.821429;PAO=0;PQA=0;PQR=0;PRO=0;QA=2062;QR=5343;RO=140;RPL=0;RPP=120.27;RPPR=307.016;RPR=54;RUN=1;SAF=54;SAP=120.27;SAR=0;SRF=140;SRP=307.016;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:55:38,17:38:1447:17:643:-41.5382,0,-113.952 0/1:80:58,22:58:2245:22:848:-48.7874,0,-178.184 0/1:41:29,12:29:1104:12:457:-26.2177,0,-87.3195 0/1:18:15,3:15:547:3:114:-3.98386,0,-44.1395 dDocent_Contig_16212 32 . T G 3269.64 . AB=0.663866;ABP=30.765;AC=5;AF=0.625;AN=8;AO=102;CIGAR=1X;DP=142;DPB=142;DPRA=0;EPP=224.5;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=0.666667;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4078;QR=1606;RO=40;RPL=0;RPP=224.5;RPPR=89.8692;RPR=102;RUN=1;SAF=102;SAP=224.5;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:50:11,39:11:435:39:1569:-126.394,0,-24.4487 0/1:46:25,21:25:1010:21:827:-60.8897,0,-77.3472 1/1:23:0,23:0:0:23:928:-83.8228,-6.92369,0 0/1:23:4,19:4:161:19:754:-61.2559,0,-7.95158 dDocent_Contig_16213 39 . T C 68.3608 . AB=0.142857;ABP=49.5419;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=90;DPB=90;DPRA=2.625;EPP=16.0391;EPPR=185.414;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=228;QR=3149;RO=84;RPL=0;RPP=16.0391;RPPR=185.414;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=84;SRP=185.414;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:42:36,6:36:1384:6:228:-8.23375,0,-112.194 0/0:33:33,0:33:1210:0:0:0,-9.93399,-109.195 0/0:13:13,0:13:485:0:0:0,-3.91339,-43.988 0/0:2:2,0:2:70:0:0:0,-0.60206,-6.64548 dDocent_Contig_16214 42 . G A 48.8581 . AB=0.1875;ABP=16.582;AC=2;AF=0.25;AN=8;AO=3;CIGAR=1X;DP=38;DPB=38;DPRA=0.727273;EPP=9.52472;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=123;QR=1302;RO=35;RPL=0;RPP=9.52472;RPPR=79.0118;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:14:14,0:14:501:0:0:0,-4.21442,-45.4061 0/1:4:2,2:2:47:2:82:-6.57556,0,-3.25677 0/1:12:11,1:11:432:1:41:-0.482207,0,-35.6197 0/0:8:8,0:8:322:0:0:0,-2.40824,-29.3489 dDocent_Contig_16215 80 . G T 1699.72 . AB=0.0446927;ABP=647.634;AC=0;AF=0;AN=8;AO=16;CIGAR=1X3M2X;DP=607;DPB=607;DPRA=0;EPP=37.7539;EPPR=743.829;GTI=0;LEN=1;MEANALT=8;MQM=14.375;MQMR=59.9772;NS=4;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=0.316629;PAO=0;PQA=0;PQR=0;PRO=0;QA=549;QR=14422;RO=439;RPL=0;RPP=37.7539;RPPR=525.474;RPR=16;RUN=1;SAF=0;SAP=37.7539;SAR=16;SRF=370;SRP=451.16;SRR=69;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:168:104,0,55,8:104:3464:0,55,8:0,1903,263:-123.328,-154.635,-434.966,0,-280.34,-263.784,-133.385,-413.714,-259.088,-411.305 0|0:186:146,5,21,3:146:4793:5,21,3:171,657,105:-8.86621,-48.9572,-434.748,0,-383.463,-381.019,-44.2686,-427.71,-378.797,-430.685 0|0:172:121,11,29,5:121:3965:11,29,5:378,981,144:-43.1701,-67.9824,-384.99,0,-308.78,-311.685,-68.1432,-376.851,-308.965,-386.982 0|0:81:68,0,8,5:68:2200:0,8,5:0,262,150:-0.711122,-21.1812,-198.662,0,-177.497,-175.089,-9.20046,-186.672,-165.507,-185.167 dDocent_Contig_16216 47 . T A 167.069 . AB=0.152381;ABP=113.218;AC=2;AF=0.25;AN=8;AO=16;CIGAR=1X;DP=172;DPB=172;DPRA=1.56716;EPP=37.7539;EPPR=171.439;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=58.8333;NS=4;NUMALT=1;ODDS=0;PAIRED=0.8125;PAIREDR=0.660256;PAO=0;PQA=0;PQR=0;PRO=0;QA=567;QR=5455;RO=156;RPL=0;RPP=37.7539;RPPR=203.454;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=145;SRP=252.952;SRR=11;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:44:44,0:44:1542:0:0:0,-13.2453,-139.065 0/1:55:47,8:47:1665:8:284:-9.34536,0,-133.569 0/1:50:42,8:42:1467:8:283:-10.7595,0,-116.832 0/0:23:23,0:23:781:0:0:0,-6.92369,-68.9498 dDocent_Contig_16218 25 . C A 34.4439 . AB=0.25;ABP=11.6962;AC=2;AF=0.25;AN=8;AO=6;CIGAR=1X1M1X3M1X;DP=50;DPB=50;DPRA=1.51852;EPP=16.0391;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=35.3333;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.813953;PAO=0;PQA=0;PQR=0;PRO=0;QA=221;QR=1690;RO=43;RPL=0;RPP=16.0391;RPPR=96.3836;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:25:23,2:23:903:2:80:0,-0.70934,-74.7647 0|1:9:7,2:7:268:2:63:-2.13888,0,-21.7685 0|0:9:8,0:8:322:0:0:0,-2.40824,-28.9491 0|1:7:5,2:5:197:2:78:-4.63043,0,-15.9992 dDocent_Contig_16219 42 . C T 38.0485 . AB=0;ABP=0;AC=0;AF=0;AN=8;AO=2;CIGAR=5M1X2M;DP=143;DPB=142.5;DPRA=0.590909;EPP=7.35324;EPPR=287.473;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=6.93889e-18;PAIRED=0;PAIREDR=0.740458;PAO=0;PQA=0;PQR=0;PRO=0;QA=80;QR=5045;RO=131;RPL=0;RPP=7.35324;RPPR=287.473;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=131;SRP=287.473;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:71:65,4,0,0:65:2501:4,0,0:137,0,0:0,-8.375,-212.645,-19.5669,-213.849,-224.964,-19.5669,-213.849,-224.964,-224.964 0|0:29:25,0,4,0:25:961:0,4,0:0,154,0:-5.50312,-13.0289,-91.9159,0,-79.2716,-78.0675,-13.0289,-91.9159,-79.2716,-91.9159 0|0:26:24,0,0,2:24:931:0,0,2:0,0,80:0,-7.22472,-83.7028,-7.22472,-83.7028,-83.7028,-0.234989,-77.1117,-77.1117,-76.5096 0|0:17:17,0,0,0:17:652:0,0,0:0,0,0:0,-5.11751,-59.0142,-5.11751,-59.0142,-59.0142,-5.11751,-59.0142,-59.0142,-59.0142 dDocent_Contig_16220 96 . C A 68.7976 . AB=0.238095;ABP=15.5221;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=124;DPB=124;DPRA=0.61165;EPP=13.8677;EPPR=259.244;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.728814;PAO=0;PQA=0;PQR=0;PRO=0;QA=162;QR=3555;RO=118;RPL=5;RPP=13.8677;RPPR=259.244;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=118;SRP=259.244;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:36:35,0:35:1042:0:0:0,-10.536,-93.7864 0/1:21:16,5:16:480:5:162:-8.57873,0,-37.1688 0/0:47:47,0:47:1437:0:0:0,-14.1484,-129.606 0/0:20:20,0:20:596:0:0:0,-6.0206,-53.9245 dDocent_Contig_16221 19 . T A 72.0535 . AB=0.123077;ABP=83.2212;AC=1;AF=0.125;AN=8;AO=11;CIGAR=1X;DP=229;DPB=229;DPRA=1.36296;EPP=7.94546;EPPR=476.391;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.272727;PAIREDR=0.834862;PAO=0;PQA=0;PQR=0;PRO=0;QA=432;QR=8553;RO=218;RPL=0;RPP=26.8965;RPPR=476.391;RPR=11;RUN=1;SAF=8;SAP=7.94546;SAR=3;SRF=218;SRP=476.391;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:65:57,8:57:2271:8:309:-8.60329,0,-184.99 0/0:45:45,0:45:1774:0:0:0,-13.5463,-159.874 0/0:66:65,1:65:2510:1:41:0,-15.7734,-221.955 0/0:53:51,2:51:1998:2:82:0,-8.17491,-172.241 dDocent_Contig_16222 46 . G C 33.1532 . AB=0.4;ABP=3.44459;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1M6I3M1X;DP=27;DPB=29.4;DPRA=0.681818;EPP=7.35324;EPPR=48.9587;GTI=0;LEN=1;MEANALT=1;MQM=36;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.8;PAO=0;PQA=0;PQR=0;PRO=0;QA=71;QR=920;RO=25;RPL=2;RPP=7.35324;RPPR=41.3151;RPR=0;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=24;SRP=48.9587;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:5:3,2:3:86:2:71:-4.71277,0,-6.51706 0|0:12:12,0:12:460:0:0:0,-3.61236,-41.7492 0|0:2:2,0:2:73:0:0:0,-0.60206,-6.9313 0|0:8:8,0:8:301:0:0:0,-2.40824,-27.4466 dDocent_Contig_16223 60 . G T 37.4807 . AB=0.116883;ABP=101.178;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X;DP=231;DPB=231;DPRA=1.5;EPP=22.5536;EPPR=457.202;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=57.9095;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.61991;PAO=0;PQA=0;PQR=0;PRO=0;QA=311;QR=7109;RO=221;RPL=9;RPP=22.5536;RPPR=482.906;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=218;SRP=457.202;SRR=3;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:77:68,9:68:2206:9:311:-5.14593,0,-170.789 0/0:46:46,0:46:1469:0:0:0,-13.8474,-127.418 0/0:66:65,0:65:2071:0:0:0,-19.5669,-186.132 0/0:42:42,0:42:1363:0:0:0,-12.6433,-122.823 dDocent_Contig_16224 9 . G C 259.905 . AB=0.276596;ABP=23.3852;AC=4;AF=0.5;AN=8;AO=13;CIGAR=2X;DP=47;DPB=47;DPRA=0;EPP=31.2394;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1.75;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.870968;PAO=0;PQA=0;PQR=0;PRO=0;QA=504;QR=1190;RO=31;RPL=0;RPP=31.2394;RPPR=70.3259;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:15:9,5:9:349:5:195:-13.3528,0,-27.2 0|1:8:7,1:7:273:1:35:-1.09039,0,-22.5284 0|1:12:7,4:7:263:4:160:-11.089,0,-20.3336 0|1:12:8,3:8:305:3:114:-6.93348,0,-24.1088 dDocent_Contig_16225 40 . T A 148.042 . AB=0.26087;ABP=14.4341;AC=1;AF=0.125;AN=8;AO=6;CIGAR=7M1X4M;DP=46;DPB=46;DPRA=23;EPP=16.0391;EPPR=66.2462;GTI=0;LEN=1;MEANALT=3;MQM=40;MQMR=58.4242;NS=4;NUMALT=3;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.939394;PAO=0;PQA=0;PQR=0;PRO=0;QA=237;QR=1273;RO=33;RPL=0;RPP=16.0391;RPPR=74.6689;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=32;SRP=66.2462;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:23:13,3,0,6:13:502:3,0,6:113,0,237:-14.1816,-14.2441,-54.5808,-18.095,-55.4839,-59.3654,0,-37.4787,-41.35,-39.5438 0|0:10:8,0,2,0:8:315:0,2,0:0,74,0:-4.01513,-6.42337,-32.3569,0,-26.308,-25.7059,-6.42337,-32.3569,-26.308,-32.3569 0|0:12:11,0,1,0:11:418:0,1,0:0,40,0:-0.383319,-3.69465,-36.7383,0,-33.4405,-33.1395,-3.69465,-36.7383,-33.4405,-36.7383 0|0:1:1,0,0,0:1:38:0,0,0:0,0,0:0,-0.30103,-3.79727,-0.30103,-3.79727,-3.79727,-0.30103,-3.79727,-3.79727,-3.79727 dDocent_Contig_16227 11 . G A 222.144 . AB=0.310345;ABP=12.0706;AC=1;AF=0.25;AN=4;AO=9;CIGAR=1X;DP=35;DPB=35;DPRA=4.83333;EPP=22.5536;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=362;QR=1027;RO=26;RPL=0;RPP=22.5536;RPPR=59.4686;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 0/0:6:6,0:6:242:0:0:0,-1.80618,-22.1569 0/1:29:20,9:20:785:9:362:-24.2143,0,-62.2372 dDocent_Contig_16228 42 . T A 302.104 . AB=0.0886076;ABP=235.275;AC=0;AF=0;AN=8;AO=18;CIGAR=1X1M1X7M;DP=198;DPB=197.2;DPRA=0;EPP=7.35324;EPPR=5.8675;GTI=0;LEN=1;MEANALT=7.5;MQM=19.9444;MQMR=41.75;NS=4;NUMALT=7;ODDS=0;PAIRED=0.111111;PAIREDR=0.368421;PAO=0;PQA=0;PQR=0;PRO=0;QA=312;QR=2887;RO=76;RPL=5;RPP=10.7311;RPPR=3.46745;RPR=13;RUN=1;SAF=17;SAP=33.8935;SAR=1;SRF=53;SRP=28.7251;SRR=23;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:56:20,12,4,2,0,4,12,0:20:755:12,4,2,0,4,12,0:231,28,32,0,141,379,0:-22.5043,-14.0237,-67.0177,-28.1407,-70.2491,-83.5353,-26.7834,-68.8912,-82.9991,-82.7844,-28.5249,-70.63,-84.7394,-83.3865,-85.1279,-18.1086,-60.2239,-74.3332,-72.9795,-74.7207,-73.5166,0,-42.1435,-56.2512,-54.8952,-56.6357,-46.2261,-53.0234,-28.5249,-70.63,-84.7394,-83.3865,-85.1279,-74.7207,-56.6357,-85.1279 0|0:47:9,1,7,10,0,2,4,7:9:330:1,7,10,0,2,4,7:13,53,205,0,52,95,69:-10.0617,-12.1638,-31.286,-11.6703,-30.4878,-28.9867,0,-18.8276,-18.3393,-16.4239,-12.771,-31.587,-31.0939,-19.4342,-32.1938,-9.22832,-28.0467,-27.5539,-15.8926,-28.6534,-28.0514,-6.41208,-25.2326,-24.7406,-13.0777,-25.8394,-22.2985,-24.6353,-10.3491,-29.1676,-28.681,-17.018,-29.7738,-26.2336,-23.4201,-27.6666 0|0:55:26,1,5,6,3,8,4,0:26:1003:1,5,6,3,8,4,0:13,44,155,51,97,100,0:-3.03235,-10.2525,-74.9068,-9.57138,-73.9207,-73.0208,0,-64.3724,-63.6922,-63.1717,-7.96607,-72.3199,-71.6393,-62.0903,-72.0224,-6.54466,-70.899,-70.2217,-60.671,-68.618,-69.0956,-4.13095,-68.493,-67.8123,-58.2627,-66.2109,-64.7908,-67.8945,-10.8591,-75.2079,-74.526,-64.9779,-72.9255,-71.5039,-69.0986,-75.8136 0|0:40:21,4,0,7,0,2,2,2:21:799:4,0,7,0,2,2,2:55,0,96,0,14,10,29:0,-3.61967,-48.1373,-6.32163,-49.3414,-52.0296,-1.57611,-44.6281,-47.3119,-45.2047,-6.32163,-49.3414,-52.0296,-47.3119,-52.0296,-6.12607,-49.1495,-51.8363,-47.1213,-51.8363,-51.2342,-6.43828,-49.4607,-52.1474,-47.4326,-52.1474,-51.9549,-51.5453,-4.83835,-47.866,-50.5532,-45.8374,-50.5532,-50.3605,-50.6716,-49.9511 dDocent_Contig_16229 15 . T G 93.2185 . AB=0.152174;ABP=51.3492;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=95;DPB=95;DPRA=2.81633;EPP=18.2106;EPPR=194.1;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=269;QR=3494;RO=88;RPL=0;RPP=18.2106;RPPR=194.1;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=88;SRP=194.1;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:46:39,7:39:1526:7:269:-10.7198,0,-123.728 0/0:32:32,0:32:1281:0:0:0,-9.63296,-115.556 0/0:9:9,0:9:363:0:0:0,-2.70927,-33.0341 0/0:8:8,0:8:324:0:0:0,-2.40824,-29.5288 dDocent_Contig_16230 106 . N T 519.525 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=17;CIGAR=2X;DP=17;DPB=17;DPRA=0;EPP=39.9253;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=556;QR=0;RO=0;RPL=0;RPP=39.9253;RPPR=0;RPR=17;RUN=1;SAF=0;SAP=39.9253;SAR=17;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:9:0,9:0:0:9:286:-26.048,-2.70927,0 1|1:1:0,1:0:0:1:34:-3.39891,-0.30103,0 1|1:3:0,3:0:0:3:96:-8.95781,-0.90309,0 1|1:4:0,4:0:0:4:140:-12.9449,-1.20412,0 dDocent_Contig_16232 8 . C T 102.047 . AB=0.25;ABP=13.8677;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=82;DPB=82;DPRA=2.28;EPP=18.2106;EPPR=165.871;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.714286;PAIREDR=0.84;PAO=0;PQA=0;PQR=0;PRO=0;QA=272;QR=2872;RO=75;RPL=0;RPP=18.2106;RPPR=165.871;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=75;SRP=165.871;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:20:20,0:20:775:0:0:0,-6.0206,-70.0778 0/1:20:15,5:15:573:5:195:-11.9036,0,-45.8902 0/0:37:35,2:35:1331:2:77:0,-3.82897,-112.767 0/0:5:5,0:5:193:0:0:0,-1.50515,-17.7414 dDocent_Contig_16235 1 . N G 120.78 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:1:0,1:0:0:1:40:-3.99568,-0.30103,0 1/1:2:0,2:0:0:2:82:-7.77968,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_16236 16 . T G 1010.04 . AB=0.37037;ABP=18.7736;AC=4;AF=0.5;AN=8;AO=40;CIGAR=1X;DP=108;DPB=108;DPRA=0;EPP=89.8692;EPPR=150.67;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.85;PAIREDR=0.852941;PAO=0;PQA=0;PQR=0;PRO=0;QA=1550;QR=2720;RO=68;RPL=0;RPP=89.8692;RPPR=150.67;RPR=40;RUN=1;SAF=40;SAP=89.8692;SAR=0;SRF=68;SRP=150.67;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:23,13:23:934:13:505:-34.9569,0,-73.5248 0/1:16:12,4:12:459:4:157:-9.69141,0,-36.8294 0/1:23:14,9:14:568:9:338:-23.8458,0,-44.5385 0/1:33:19,14:19:759:14:550:-39.9082,0,-58.6973 dDocent_Contig_16239 9 . G A 113.495 . AB=0.259259;ABP=16.6021;AC=3;AF=0.375;AN=8;AO=7;CIGAR=2X;DP=35;DPB=35;DPRA=1.125;EPP=18.2106;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.964286;PAO=0;PQA=0;PQR=0;PRO=0;QA=264;QR=1076;RO=28;RPL=0;RPP=18.2106;RPPR=63.8115;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:12:10,2:10:377:2:70:-3.03386,0,-30.6673 0|0:8:8,0:8:314:0:0:0,-2.40824,-28.6252 0|1:11:8,3:8:310:3:117:-7.59888,0,-24.95 0|1:4:2,2:2:75:2:77:-6.10471,0,-5.91622 dDocent_Contig_16240 119 . T C 178.735 . AB=0.470588;ABP=3.13803;AC=2;AF=0.25;AN=8;AO=8;CIGAR=1X;DP=32;DPB=32;DPRA=1.13333;EPP=4.09604;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=44.5;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=312;QR=841;RO=24;RPL=0;RPP=20.3821;RPPR=55.1256;RPR=8;RUN=1;SAF=5;SAP=4.09604;SAR=3;SRF=0;SRP=55.1256;SRR=24;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:4:1,3:1:37:3:117:-7.29711,0,-2.49371 0/0:4:4,0:4:147:0:0:0,-1.20412,-13.5899 0/1:13:8,5:8:259:5:195:-13.9407,0,-19.7096 0/0:11:11,0:11:398:0:0:0,-3.31133,-36.1625 dDocent_Contig_16241 140 . A G 443.132 . AB=0.307692;ABP=7.18621;AC=5;AF=0.625;AN=8;AO=14;CIGAR=1X;DP=36;DPB=36;DPRA=0.589744;EPP=33.4109;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=539;QR=832;RO=22;RPL=0;RPP=33.4109;RPPR=50.7827;RPR=14;RUN=1;SAF=0;SAP=33.4109;SAR=14;SRF=0;SRP=50.7827;SRR=22;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:13:13,0:13:498:0:0:0,-3.91339,-45.1667 1/1:6:0,6:0:0:6:231:-21.1577,-1.80618,0 0/1:13:9,4:9:334:4:152:-10.1361,0,-26.4969 1/1:4:0,4:0:0:4:156:-14.4173,-1.20412,0 dDocent_Contig_16242 17 . T A 4026.17 . AB=0.449495;ABP=7.39711;AC=7;AF=0.875;AN=8;AO=89;CIGAR=3M1X;DP=198;DPB=214.25;DPRA=0;EPP=196.271;EPPR=72.4974;GTI=0;LEN=1;MEANALT=3.25;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3545;QR=1262;RO=32;RPL=0;RPP=196.271;RPPR=72.4974;RPR=89;RUN=1;SAF=89;SAP=196.271;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:73:10,25,3,35:10:395:25,3,35:987,122,1392:-160.292,-82.0918,-107.07,-153.239,-104.532,-184.84,-48.7061,0,-71.146,-70.6741 1|1:77:8,28,6,35:8:317:28,6,35:1083,236,1402:-175.941,-89.4097,-107.072,-158.936,-96.0879,-183.221,-62.8459,0,-69.5248,-78.4028 1|1:14:1,6,0,6:1:41:6,0,6:238,0,235:-35.2145,-15.9227,-17.5026,-35.5155,-19.3088,-38.9007,-16.1963,0,-19.5818,-17.7756 0|1:34:13,6,1,13:13:509:6,1,13:236,40,516:-38.5679,-23.0693,-63.1142,-39.1859,-61.625,-80.7365,0,-22.4401,-38.558,-37.9401 dDocent_Contig_16243 7 . A G 30.9668 . AB=0.16;ABP=28.1125;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=76;DPB=76;DPRA=1.05405;EPP=13.8677;EPPR=157.185;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=147;QR=2687;RO=71;RPL=0;RPP=13.8677;RPPR=157.185;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=71;SRP=157.185;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:21,4:21:794:4:130:-4.49426,0,-64.2594 0/0:28:28,0:28:1067:0:0:0,-8.42884,-96.3366 0/0:14:13,1:13:486:1:17:0,-2.51444,-42.383 0/0:9:9,0:9:340:0:0:0,-2.70927,-30.9552 dDocent_Contig_16245 110 . A G 839.898 . AB=0.583333;ABP=6.62942;AC=4;AF=0.5;AN=8;AO=35;CIGAR=1X2M;DP=60;DPB=60;DPRA=0;EPP=79.0118;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1196;QR=701;RO=23;RPL=0;RPP=79.0118;RPPR=52.9542;RPR=35;RUN=1;SAF=0;SAP=79.0118;SAR=35;SRF=0;SRP=52.9542;SRR=23;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:21:8,2,11:8:212:2,11:62,382:-28.6791,-26.1161,-42.1472,0,-11.6458,-13.3204 0|1:15:2,0,13:2:68:0,13:0,442:-35.5903,-36.1923,-41.7083,0,-5.85582,-1.94243 0|1:20:10,0,10:10:326:0,10:0,338:-24.7266,-27.7369,-54.0516,0,-26.6467,-23.6364 0|1:4:3,0,1:3:95:0,1:0,34:-2.19479,-3.09788,-10.7251,0,-7.96129,-7.66026 dDocent_Contig_16247 39 . G A 33.9116 . AB=0.1875;ABP=16.582;AC=2;AF=0.25;AN=8;AO=3;CIGAR=1X;DP=46;DPB=46;DPRA=0.533333;EPP=9.52472;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=120;QR=1662;RO=43;RPL=0;RPP=9.52472;RPPR=96.3836;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:28:28,0:28:1064:0:0:0,-8.42884,-96.0392 0/1:14:12,2:12:479:2:79:-3.28282,0,-39.2467 0/0:2:2,0:2:79:0:0:0,-0.60206,-7.49724 0/1:2:1,1:1:40:1:41:-3.49251,0,-3.39362 dDocent_Contig_16248 11 . A G 1017.57 . AB=0.4;ABP=11.6962;AC=4;AF=0.5;AN=8;AO=40;CIGAR=1X;DP=100;DPB=100;DPRA=0;EPP=89.8692;EPPR=133.299;GTI=0;LEN=1;MEANALT=1;MQM=59.925;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.983333;PAO=0;PQA=0;PQR=0;PRO=0;QA=1532;QR=2372;RO=60;RPL=0;RPP=89.8692;RPPR=133.299;RPR=40;RUN=1;SAF=40;SAP=89.8692;SAR=0;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:44:20,24:20:811:24:929:-70.6543,0,-60.0609 0/1:21:15,6:15:588:6:236:-15.288,0,-46.9381 0/1:25:18,7:18:705:7:245:-14.8503,0,-56.2395 0/1:10:7,3:7:268:3:122:-8.36219,0,-21.4666 dDocent_Contig_16249 9 . G T 6496.9 . AB=0.0833333;ABP=39.2015;AC=0;AF=0;AN=8;AO=2;CIGAR=2X2M1X;DP=325;DPB=325;DPRA=0;EPP=7.35324;EPPR=239.701;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.908257;PAO=0;PQA=0;PQR=0;PRO=0;QA=80;QR=4304;RO=109;RPL=0;RPP=7.35324;RPPR=239.701;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=109;SRP=239.701;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:126:35,91,0:35:1386:91,0:3597,0:-285.841,0,-87.0782,-296.377,-114.472,-410.453 0|0:102:39,61,0:39:1542:61,0:2433,0:-188.632,0,-108.543,-200.372,-126.906,-327.271 0|0:73:27,46,0:27:1062:46,0:1806,0:-140.789,0,-73.9059,-148.917,-87.7533,-236.277 0|0:24:8,14,2:8:314:14,2:539,80:-41.8272,0,-21.6047,-37.6434,-19.2275,-62.8692 dDocent_Contig_16250 7 . A C 5113.11 . AB=0.132353;ABP=322.344;AC=1;AF=0.125;AN=8;AO=36;CIGAR=1X1M1X2M;DP=272;DPB=272;DPRA=0;EPP=81.1833;EPPR=157.185;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.722222;PAIREDR=0.901408;PAO=0;PQA=0;PQR=0;PRO=0;QA=1363;QR=2731;RO=71;RPL=0;RPP=81.1833;RPPR=157.185;RPR=36;RUN=1;SAF=36;SAP=81.1833;SAR=0;SRF=71;SRP=157.185;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:71:17,48,4:17:654:48,4:1851,153:-146.895,0,-39.2562,-139.457,-41.1498,-191.948 0|1:89:10,62,17:10:387:62,17:2421,643:-216.935,-20.9101,-34.04,-167.239,0,-193.911 0|0:59:18,30,11:18:695:30,11:1166,412:-90.4068,0,-48.055,-62.0857,-23.3468,-115.852 0|0:53:26,23,4:26:995:23,4:881,155:-64.4715,0,-74.7241,-59.5635,-68.913,-140.011 dDocent_Contig_16251 118 . A G 33.9037 . AB=0.25;ABP=7.35324;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X;DP=24;DPB=24;DPRA=1.5;EPP=7.35324;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.681818;PAO=0;PQA=0;PQR=0;PRO=0;QA=79;QR=889;RO=22;RPL=2;RPP=7.35324;RPPR=50.7827;RPR=0;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=50.7827;SRR=22;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:3:3,0:3:123:0:0:0,-0.90309,-11.4648 0/0:6:6,0:6:240:0:0:0,-1.80618,-21.9751 0/1:8:6,2:6:240:2:79:-5.089,0,-19.5674 0/0:7:7,0:7:286:0:0:0,-2.10721,-26.1148 dDocent_Contig_16252 30 . T G 69.9428 . AB=0.6;ABP=3.44459;AC=2;AF=0.25;AN=8;AO=4;CIGAR=1X;DP=31;DPB=31;DPRA=0.527778;EPP=11.6962;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=48;MQMR=58.5556;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=0;PAIREDR=0.962963;PAO=0;PQA=0;PQR=0;PRO=0;QA=156;QR=1087;RO=27;RPL=0;RPP=11.6962;RPPR=61.6401;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:2:1,1:1:41:1:39:-3.28442,0,-3.49251 0/0:14:13,1:13:523:1:40:0,-0.311734,-43.5148 0/1:3:1,2:1:38:2:77:-6.27055,0,-1.1884 0/0:12:12,0:12:485:0:0:0,-3.61236,-44.002 dDocent_Contig_16253 155 . C G 38.8027 . AB=0.285714;ABP=5.80219;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X;DP=23;DPB=23;DPRA=1.3125;EPP=7.35324;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=809;RO=21;RPL=0;RPP=7.35324;RPPR=48.6112;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=48.6112;SRR=21;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:4:4,0:4:161:0:0:0,-1.20412,-14.8755 0/0:1:1,0:1:34:0:0:0,-0.30103,-3.39891 0/1:7:5,2:5:199:2:81:-5.57852,0,-16.1808 0/0:11:11,0:11:415:0:0:0,-3.31133,-37.6934 dDocent_Contig_16254 8 . C A 477.52 . AB=0.37037;ABP=10.8919;AC=3;AF=0.375;AN=8;AO=21;CIGAR=1X;DP=84;DPB=84;DPRA=0;EPP=48.6112;EPPR=139.813;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.8571;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=0.761905;PAIREDR=0.444444;PAO=0;PQA=0;PQR=0;PRO=0;QA=798;QR=2430;RO=63;RPL=0;RPP=48.6112;RPPR=139.813;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=63;SRP=139.813;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:30:29,1:29:1126:1:39:0,-5.13434,-97.7237 0/1:19:14,5:14:539:5:194:-12.1133,0,-43.1343 0/1:23:10,13:10:385:13:488:-37.3377,0,-28.0831 0/1:12:10,2:10:380:2:77:-3.69678,0,-30.9413 dDocent_Contig_16256 27 . G A 931.223 . AB=0.412698;ABP=7.18091;AC=5;AF=0.625;AN=8;AO=32;CIGAR=1X;DP=69;DPB=69;DPRA=0;EPP=72.4974;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1289;QR=1478;RO=37;RPL=0;RPP=72.4974;RPPR=83.3548;RPR=32;RUN=1;SAF=32;SAP=72.4974;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:40:27,13:27:1082:13:522:-35.2856,0,-85.6247 1/1:6:0,6:0:0:6:241:-22.0663,-1.80618,0 0/1:17:7,10:7:276:10:404:-31.602,0,-20.0895 0/1:6:3,3:3:120:3:122:-9.56631,0,-9.38113 dDocent_Contig_16257 13 . G T 1581.88 . AB=0.54;ABP=4.40004;AC=4;AF=0.5;AN=8;AO=54;CIGAR=1X;DP=100;DPB=100;DPRA=0;EPP=120.27;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.981481;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2159;QR=1788;RO=46;RPL=0;RPP=120.27;RPPR=102.898;RPR=54;RUN=1;SAF=54;SAP=120.27;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:43:22,21:22:861:21:835:-62.5193,0,-64.8583 0/1:32:17,15:17:663:15:599:-44.6127,0,-50.3668 0/1:19:5,14:5:193:14:562:-45.202,0,-12.0205 0/1:6:2,4:2:71:4:163:-13.2522,0,-4.9342 dDocent_Contig_16258 134 . T A 91.1442 . AB=0.444444;ABP=3.25157;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=26;DPB=26;DPRA=1.58824;EPP=11.6962;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=143;QR=875;RO=22;RPL=0;RPP=11.6962;RPPR=50.7827;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=50.7827;SRR=22;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:5,4:5:202:4:143:-10.5121,0,-15.8528 0/0:3:3,0:3:115:0:0:0,-0.90309,-10.7232 0/0:11:11,0:11:439:0:0:0,-3.31133,-39.8638 0/0:3:3,0:3:119:0:0:0,-0.90309,-11.0945 dDocent_Contig_16260 82 . A G 374.774 . AB=0.252874;ABP=49.1603;AC=3;AF=0.375;AN=8;AO=24;CIGAR=1X;DP=112;DPB=112;DPRA=0;EPP=55.1256;EPPR=194.1;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=0.833333;PAIREDR=0.727273;PAO=0;PQA=0;PQR=0;PRO=0;QA=824;QR=3078;RO=88;RPL=24;RPP=55.1256;RPPR=194.1;RPR=0;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=88;SRP=194.1;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:38:23,15:23:823:15:514:-35.147,0,-62.9543 0/1:23:20,3:20:709:3:105:-2.87247,0,-57.2126 0/0:25:23,2:23:777:2:68:0,-1.06787,-63.7809 0/1:26:22,4:22:769:4:137:-4.84128,0,-61.7057 dDocent_Contig_16261 28 . C T 169.493 . AB=0.304348;ABP=10.6577;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X;DP=77;DPB=77;DPRA=2.08;EPP=22.5536;EPPR=150.67;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.970588;PAO=0;PQA=0;PQR=0;PRO=0;QA=362;QR=2700;RO=68;RPL=0;RPP=22.5536;RPPR=150.67;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=68;SRP=150.67;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:23:23,0:23:907:0:0:0,-6.92369,-81.9309 0/0:29:27,2:27:1064:2:82:0,-0.950192,-88.2631 0/1:23:16,7:16:647:7:280:-18.6479,0,-51.6402 0/0:2:2,0:2:82:0:0:0,-0.60206,-7.77968 dDocent_Contig_16262 15 . T C 625.544 . AB=0.44186;ABP=4.27278;AC=5;AF=0.625;AN=8;AO=22;CIGAR=1X;DP=46;DPB=46;DPRA=0;EPP=50.7827;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.590909;PAIREDR=0.708333;PAO=0;PQA=0;PQR=0;PRO=0;QA=882;QR=964;RO=24;RPL=0;RPP=50.7827;RPPR=55.1256;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:8,13:8:328:13:517:-40.5508,0,-23.5687 0/1:8:5,3:5:204:3:123:-9.05655,0,-16.3358 0/1:14:11,3:11:432:3:119:-6.88008,0,-35.0132 1/1:3:0,3:0:0:3:123:-11.4648,-0.90309,0 dDocent_Contig_16263 11 . C A 2862.13 . AB=0.0645161;ABP=54.0749;AC=0;AF=0;AN=8;AO=2;CIGAR=1X7M1X;DP=150;DPB=150;DPRA=0;EPP=7.35324;EPPR=79.0118;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=4;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=74;QR=1376;RO=35;RPL=0;RPP=7.35324;RPPR=79.0118;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:41:10,1,0,3,26:10:393:1,0,3,26:38,0,121,1044:-83.0114,-82.9059,-114.928,-86.0217,-115.229,-118.345,-76.0474,-105.254,-108.37,-107.467,0,-29.2062,-32.3217,-22.3455,-24.4949 0|0:31:1,1,2,5,22:1:36:1,2,5,22:37,74,203,878:-85.8404,-83.1154,-85.7505,-80.0894,-79.9994,-82.4234,-69.3975,-69.3075,-66.2816,-70.8285,-13.8296,-13.7387,-10.7147,0,-10.1408 0|0:53:16,3,0,5,29:16:630:3,0,5,29:113,0,203,1153:-90.1102,-85.6684,-136.59,-94.9267,-137.493,-146.752,-78.1829,-120.75,-130.008,-128.503,0,-42.5676,-51.8252,-35.0797,-43.0953 0|0:25:8,1,0,11,5:8:317:1,0,11,5:38,0,449,197:-34.6493,-33.9424,-59.7316,-37.0575,-60.0326,-63.1483,0,-22.9799,-26.0953,-22.784,-20.8565,-43.83,-46.9453,-9.89097,-45.4402 dDocent_Contig_16268 97 . A G 100.111 . AB=0.240741;ABP=34.5369;AC=3;AF=0.375;AN=8;AO=13;CIGAR=1X;DP=90;DPB=90;DPRA=0.5;EPP=31.2394;EPPR=170.214;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.846154;PAIREDR=0.974026;PAO=0;PQA=0;PQR=0;PRO=0;QA=343;QR=2286;RO=77;RPL=13;RPP=31.2394;RPPR=170.214;RPR=0;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=77;SRP=170.214;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:36:36,0:36:1002:0:0:0,-10.8371,-90.4396 0/1:25:20,5:20:639:5:152:-6.45493,0,-50.2885 0/1:17:13,4:13:401:4:85:-2.74413,0,-31.2712 0/1:12:8,4:8:244:4:106:-6.19083,0,-18.6478 dDocent_Contig_16269 122 . G A 45.7921 . AB=0.151515;ABP=37.8197;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=49;DPB=49;DPRA=6.1875;EPP=13.8677;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=173;QR=1445;RO=44;RPL=0;RPP=13.8677;RPPR=98.5551;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=98.5551;SRR=44;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:33:28,5:28:948:5:173:-5.97622,0,-75.697 0/0:5:5,0:5:138:0:0:0,-1.50515,-12.6929 0/0:10:10,0:10:334:0:0:0,-3.0103,-30.3849 0/0:1:1,0:1:25:0:0:0,-0.30103,-2.49986 dDocent_Contig_16270 179 . T G 192.141 . AB=0.212766;ABP=36.6912;AC=2;AF=0.25;AN=8;AO=10;CIGAR=1X;DP=53;DPB=53;DPRA=7.83333;EPP=24.725;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=400;QR=1665;RO=43;RPL=10;RPP=24.725;RPPR=96.3836;RPR=0;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=96.3836;SRR=43;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:16,6:16:617:6:236:-14.9873,0,-49.2298 0/1:25:21,4:21:829:4:164:-7.62415,0,-67.3982 0/0:5:5,0:5:186:0:0:0,-1.50515,-17.0974 0/0:1:1,0:1:33:0:0:0,-0.30103,-3.29913 dDocent_Contig_16271 182 . A C 47.828 . AB=0.4;ABP=3.44459;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X2M1X;DP=23;DPB=23;DPRA=0.833333;EPP=7.35324;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=840;RO=21;RPL=2;RPP=7.35324;RPPR=48.6112;RPR=0;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=48.6112;SRR=21;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:5:3,2:3:120:2:81:-6.18058,0,-9.68275 0|0:3:3,0:3:116:0:0:0,-0.90309,-10.8155 0|0:7:7,0:7:284:0:0:0,-2.10721,-25.934 0|0:8:8,0:8:320:0:0:0,-2.40824,-29.1677 dDocent_Contig_16273 81 . A G 959.677 . AB=0.589286;ABP=6.88793;AC=5;AF=0.625;AN=8;AO=38;CIGAR=1X2M1X;DP=61;DPB=61;DPRA=0;EPP=85.5263;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1299;QR=793;RO=23;RPL=38;RPP=85.5263;RPPR=52.9542;RPR=0;RUN=1;SAF=38;SAP=85.5263;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:20:7,13:7:242:13:446:-34.4479,0,-16.097 0|1:18:12,6:12:411:6:198:-12.726,0,-31.9007 0|1:18:4,14:4:140:14:488:-38.8328,0,-7.52639 1|1:5:0,5:0:0:5:167:-15.359,-1.50515,0 dDocent_Contig_16274 46 . A C 679.415 . AB=0.252101;ABP=66.5304;AC=3;AF=0.375;AN=8;AO=30;CIGAR=1X;DP=131;DPB=131;DPRA=3.30556;EPP=68.1545;EPPR=222.329;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.333333;PAIREDR=0.29703;PAO=0;PQA=0;PQR=0;PRO=0;QA=1201;QR=3948;RO=101;RPL=0;RPP=68.1545;RPPR=222.329;RPR=30;RUN=1;SAF=30;SAP=68.1545;SAR=0;SRF=101;SRP=222.329;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:41:32,9:32:1271:9:361:-20.512,0,-102.316 0/1:43:32,11:32:1244:11:441:-27.0985,0,-99.286 0/1:35:25,10:25:967:10:399:-25.729,0,-76.7889 0/0:12:12,0:12:466:0:0:0,-3.61236,-42.2827 dDocent_Contig_16275 13 . T C 1168.44 . AB=0.409524;ABP=10.476;AC=4;AF=0.5;AN=8;AO=43;CIGAR=1X;DP=105;DPB=105;DPRA=0;EPP=96.3836;EPPR=137.642;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.488372;PAIREDR=0.548387;PAO=0;PQA=0;PQR=0;PRO=0;QA=1716;QR=2464;RO=62;RPL=0;RPP=96.3836;RPPR=137.642;RPR=43;RUN=1;SAF=43;SAP=96.3836;SAR=0;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:38:25,13:25:1006:13:520:-35.7049,0,-79.3932 0/1:17:10,7:10:390:7:287:-21.0877,0,-30.3341 0/1:32:17,15:17:668:15:599:-44.6142,0,-50.8122 0/1:18:10,8:10:400:8:310:-22.8352,0,-30.9382 dDocent_Contig_16276 31 . T A 1320.2 . AB=0.5;ABP=3.0103;AC=4;AF=0.5;AN=8;AO=46;CIGAR=1X;DP=92;DPB=92;DPRA=0;EPP=102.898;EPPR=100.727;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.0434783;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1831;QR=1751;RO=45;RPL=0;RPP=102.898;RPPR=100.727;RPR=46;RUN=1;SAF=46;SAP=102.898;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:41:24,17:24:951:17:681:-49.2769,0,-73.5408 0/1:23:15,8:15:586:8:326:-22.7862,0,-46.1498 0/1:21:5,15:5:183:15:597:-47.6577,0,-10.4146 0/1:7:1,6:1:31:6:227:-18.6786,0,-0.992244 dDocent_Contig_16277 70 . A C 88.4407 . AB=0.266667;ABP=10.1038;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=53;DPB=53;DPRA=1.18421;EPP=11.6962;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=58.4694;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.959184;PAO=0;PQA=0;PQR=0;PRO=0;QA=163;QR=1881;RO=49;RPL=4;RPP=11.6962;RPPR=109.412;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:20:20,0:20:783:0:0:0,-6.0206,-70.7866 0/1:15:11,4:11:411:4:163:-10.543,0,-32.1091 0/0:14:14,0:14:527:0:0:0,-4.21442,-47.0587 0/0:4:4,0:4:160:0:0:0,-1.20412,-14.7834 dDocent_Contig_16279 10 . T A 79.6344 . AB=0.129032;ABP=77.1206;AC=2;AF=0.25;AN=8;AO=9;CIGAR=1X;DP=117;DPB=117;DPRA=1.11111;EPP=22.5536;EPPR=237.529;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.527778;PAO=0;PQA=0;PQR=0;PRO=0;QA=363;QR=4233;RO=108;RPL=0;RPP=22.5536;RPPR=237.529;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=108;SRP=237.529;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:19,2:19:744:2:82:-1.45805,0,-60.9592 0/0:27:27,0:27:1036:0:0:0,-8.12781,-93.5274 0/1:41:35,6:35:1383:6:240:-9.63231,0,-112.381 0/0:28:27,1:27:1070:1:41:0,-4.33427,-92.4954 dDocent_Contig_16280 12 . G A 4201.75 . AB=0.176296;ABP=1231.7;AC=4;AF=0.5;AN=8;AO=238;CIGAR=2X;DP=1350;DPB=1350;DPRA=0;EPP=519.821;EPPR=2098.22;GTI=0;LEN=1;MEANALT=5.25;MQM=53.0462;MQMR=59.4355;NS=4;NUMALT=1;ODDS=0;PAIRED=0.0504202;PAIREDR=0.219727;PAO=0;PQA=0;PQR=0;PRO=0;QA=9393;QR=40217;RO=1024;RPL=0;RPP=519.821;RPPR=2226.6;RPR=238;RUN=1;SAF=238;SAP=519.821;SAR=0;SRF=1009;SRP=2098.22;SRR=15;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:470:346,91:346:13572:91:3554:-173.661,0,-1086.45 0|1:443:324,88:324:12702:88:3495:-171.612,0,-1015.02 0|1:314:256,42:256:10069:42:1665:-59.0027,0,-815.458 0|1:123:98,17:98:3874:17:679:-23.2975,0,-313.08 dDocent_Contig_16281 11 . G A 35.7864 . AB=0.25;ABP=7.35324;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X;DP=122;DPB=122;DPRA=0.210526;EPP=7.35324;EPPR=263.587;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=4815;RO=120;RPL=0;RPP=7.35324;RPPR=263.587;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=120;SRP=263.587;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:59:59,0:59:2373:0:0:0,-17.7608,-213.719 0/0:44:44,0:44:1750:0:0:0,-13.2453,-157.718 0/1:8:6,2:6:244:2:81:-5.27749,0,-19.9306 0/0:11:11,0:11:448:0:0:0,-3.31133,-40.676 dDocent_Contig_16282 21 . A G 669.243 . AB=0.146067;ABP=99.8482;AC=2;AF=0.25;AN=8;AO=13;CIGAR=2M4X12M;DP=89;DPB=90.1667;DPRA=0;EPP=31.2394;EPPR=92.0407;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=4;NUMALT=6;ODDS=0;PAIRED=0.538462;PAIREDR=0.878049;PAO=0;PQA=0;PQR=0;PRO=0;QA=512;QR=1596;RO=41;RPL=0;RPP=31.2394;RPPR=92.0407;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:27:17,0,0,2,0,1,6:17:666:0,0,2,0,1,6:0,0,76,0,40,238:-14.4797,-19.5972,-74.3627,-19.5972,-74.3627,-74.3627,-13.3674,-68.1306,-68.1306,-67.5286,-19.5972,-74.3627,-74.3627,-68.1306,-74.3627,-16.3013,-71.0673,-71.0673,-64.8353,-71.0673,-70.7663,0,-54.7697,-54.7697,-48.5378,-54.7697,-51.4742,-52.9635 0|0:29:9,3,0,1,13,2,1:9:356:3,0,1,13,2,1:120,0,37,529,75,37:-40.9424,-33.7668,-62.1615,-43.6517,-63.0646,-72.9495,-40.6262,-60.0387,-69.9235,-69.6225,0,-19.4184,-29.3052,-26.2796,-25.3918,-37.5122,-56.9244,-66.8091,-63.7833,-23.1654,-66.2071,-40.6262,-60.0387,-69.9235,-66.8975,-26.2796,-63.7833,-69.6225 0|1:18:4,0,3,0,5,0,4:4:159:0,3,0,5,0,4:0,98,0,203,0,162:-15.8414,-17.0455,-30.1478,-9.13863,-22.2417,-21.3386,-17.0455,-30.1478,-22.2417,-30.1478,-0.2705,-13.3871,-5.47867,-13.3871,-11.882,-17.0455,-30.1478,-22.2417,-30.1478,-13.3871,-30.1478,-3.66411,-16.7762,-8.86873,-16.7762,0,-16.7762,-15.5721 0|0:15:11,0,0,0,2,0,2:11:415:0,0,0,2,0,2:0,0,0,76,0,75:-2.92366,-6.23499,-40.2444,-6.23499,-40.2444,-40.2444,-6.23499,-40.2444,-40.2444,-40.2444,0,-34.0115,-34.0115,-34.0115,-33.4094,-6.23499,-40.2444,-40.2444,-40.2444,-34.0115,-40.2444,-0.0946634,-34.1019,-34.1019,-34.1019,-27.869,-34.1019,-33.4999 dDocent_Contig_16283 7 . A G 597.774 . AB=0.283951;ABP=35.8505;AC=5;AF=0.625;AN=8;AO=27;CIGAR=1X2M1X;DP=85;DPB=85;DPRA=0;EPP=61.6401;EPPR=128.956;GTI=0;LEN=1;MEANALT=1;MQM=53.963;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.965517;PAO=0;PQA=0;PQR=0;PRO=0;QA=990;QR=2233;RO=58;RPL=0;RPP=61.6401;RPPR=128.956;RPR=27;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:26:19,7:19:736:7:258:-15.0338,0,-58.7446 0|1:18:12,6:12:464:6:227:-15.3608,0,-36.6929 0|1:37:27,10:27:1033:10:375:-22.7703,0,-82.1391 1|1:4:0,4:0:0:4:130:-12.0105,-1.20412,0 dDocent_Contig_16284 22 . A G 52.3192 . AB=0.142857;ABP=34.0313;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=77;DPB=77;DPRA=1.71429;EPP=11.6962;EPPR=161.528;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.726027;PAO=0;PQA=0;PQR=0;PRO=0;QA=163;QR=2928;RO=73;RPL=0;RPP=11.6962;RPPR=161.528;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=73;SRP=161.528;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:24,4:24:964:4:163:-6.62959,0,-78.6313 0/0:27:27,0:27:1083:0:0:0,-8.12781,-97.757 0/0:20:20,0:20:807:0:0:0,-6.0206,-72.9449 0/0:2:2,0:2:74:0:0:0,-0.60206,-7.02486 dDocent_Contig_16285 13 . G A 101.348 . AB=0.166667;ABP=31.9633;AC=4;AF=0.666667;AN=6;AO=6;CIGAR=1X;DP=31;DPB=31;DPRA=0;EPP=16.0391;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=239;QR=998;RO=25;RPL=0;RPP=16.0391;RPPR=57.2971;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1:0,1:0:0:1:41:-4.09457,-0.30103,0 0/1:23:20,3:20:794:3:119:-4.17132,0,-64.852 ./.:.:.:.:.:.:.:. 0/1:7:5,2:5:204:2:79:-5.39003,0,-16.6368 dDocent_Contig_16286 18 . C G 878.893 . AB=0.823529;ABP=33.9218;AC=1;AF=0.125;AN=8;AO=28;CIGAR=1X;DP=73;DPB=73;DPRA=2.61538;EPP=63.8115;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1106;QR=1790;RO=45;RPL=0;RPP=63.8115;RPPR=100.727;RPR=28;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:35:35,0:35:1393:0:0:0,-10.536,-125.628 0/1:34:6,28:6:244:28:1106:-89.5876,0,-12.1038 0/0:1:1,0:1:40:0:0:0,-0.30103,-3.99568 0/0:3:3,0:3:113:0:0:0,-0.90309,-10.5384 dDocent_Contig_16287 160 . T A 136.947 . AB=0.153846;ABP=57.1301;AC=4;AF=0.5;AN=8;AO=9;CIGAR=1X;DP=55;DPB=55;DPRA=8.83333;EPP=3.25157;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=53.7778;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.666667;PAIREDR=0.978261;PAO=0;PQA=0;PQR=0;PRO=0;QA=351;QR=1824;RO=46;RPL=4;RPP=3.25157;RPPR=102.898;RPR=5;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=102.898;SRR=46;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:25,6:25:983:6:233:-12.0072,0,-79.4347 0/1:21:19,2:19:762:2:81:-0.547547,0,-62.581 0/0:2:2,0:2:79:0:0:0,-0.60206,-7.49724 1/1:1:0,1:0:0:1:37:-3.08073,-0.30103,0 dDocent_Contig_16288 19 . A T 947.612 . AB=0.6;ABP=6.91895;AC=5;AF=0.625;AN=8;AO=31;CIGAR=1X;DP=49;DPB=49;DPRA=0;EPP=70.3259;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.935484;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1247;QR=706;RO=18;RPL=0;RPP=70.3259;RPPR=42.0968;RPR=31;RUN=1;SAF=31;SAP=70.3259;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:10,8:10:386:8:322:-23.9287,0,-29.6695 1/1:4:0,4:0:0:4:161:-14.8749,-1.20412,0 0/1:11:2,9:2:81:9:364:-29.8134,0,-4.3744 0/1:16:6,10:6:239:10:400:-31.5416,0,-17.0687 dDocent_Contig_16289 27 . T C 304.366 . AB=0.2;ABP=18.6449;AC=2;AF=0.25;AN=8;AO=4;CIGAR=1M1X4M1X2M1D5M;DP=35;DPB=34.2;DPRA=3.33333;EPP=11.6962;EPPR=42.0968;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=4;NUMALT=5;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=158;QR=717;RO=18;RPL=0;RPP=11.6962;RPPR=42.0968;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:3:0,3,0,0,0,0:0:0:3,0,0,0,0:108,0,0,0,0:-10.0721,-0.90309,0,-10.0721,-0.90309,-10.0721,-10.0721,-0.90309,-10.0721,-10.0721,-10.0721,-0.90309,-10.0721,-10.0721,-10.0721,-10.0721,-0.90309,-10.0721,-10.0721,-10.0721,-10.0721 1|0:11:2,1,3,2,0,3:2:77:1,3,2,0,3:40,119,80,0,122:-12.9418,-10.2489,-16.2668,-3.7504,-6.77269,-9.16486,-6.95422,-9.97734,-3.47758,-12.6706,-13.5439,-16.5678,-10.0679,-13.2727,-19.8631,-3.47788,-6.50087,0,-3.20505,-9.79667,-8.89358 0|0:12:8,0,0,0,4,0:8:319:0,0,0,4,0:0,0,0,156,0:-10.8035,-13.2117,-39.489,-13.2117,-39.489,-39.489,-13.2117,-39.489,-39.489,-39.489,0,-26.6698,-26.6698,-26.6698,-25.4657,-13.2117,-39.489,-39.489,-39.489,-26.6698,-39.489 0|1:9:8,0,1,0,0,0:8:321:0,1,0,0,0:0,39,0,0,0:-1.18729,-3.59553,-30.0551,0,-26.8505,-26.5494,-3.59553,-30.0551,-26.8505,-30.0551,-3.59553,-30.0551,-26.8505,-30.0551,-30.0551,-3.59553,-30.0551,-26.8505,-30.0551,-30.0551,-30.0551 dDocent_Contig_16291 7 . A T 91.0428 . AB=0.10828;ABP=212.26;AC=2;AF=0.25;AN=8;AO=23;CIGAR=1X;DP=268;DPB=268;DPRA=2.08108;EPP=52.9542;EPPR=526.371;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.4653;NS=4;NUMALT=1;ODDS=0;PAIRED=0.26087;PAIREDR=0.314286;PAO=0;PQA=0;PQR=0;PRO=0;QA=888;QR=9365;RO=245;RPL=0;RPP=52.9542;RPPR=535.021;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=244;SRP=526.371;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:104:94,10:94:3583:10:387:-3.88054,0,-291.208 0/0:74:68,6:68:2599:6:232:0,-1.02716,-212.822 0/1:53:46,7:46:1762:7:269:-8.62015,0,-142.851 0/0:37:37,0:37:1421:0:0:0,-11.1381,-128.098 dDocent_Contig_16292 14 . C G 144.078 . AB=0.258065;ABP=18.771;AC=3;AF=0.375;AN=8;AO=9;CIGAR=1X;DP=50;DPB=50;DPRA=0;EPP=22.5536;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.780488;PAO=0;PQA=0;PQR=0;PRO=0;QA=349;QR=1665;RO=41;RPL=0;RPP=22.5536;RPPR=92.0407;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:3:2,1:2:82:1:41:-3.19148,0,-6.87659 0/1:18:15,3:15:608:3:106:-4.46735,0,-49.6398 0/0:19:18,1:18:730:1:38:0,-1.9223,-62.2264 0/1:10:6,4:6:245:4:164:-12.1396,0,-19.4192 dDocent_Contig_16293 20 . T C 162.594 . AB=0.6;ABP=3.87889;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=82;DPB=82;DPRA=0.416667;EPP=16.0391;EPPR=168.042;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=56.5263;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.75;PAO=0;PQA=0;PQR=0;PRO=0;QA=229;QR=3061;RO=76;RPL=0;RPP=16.0391;RPPR=168.042;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=76;SRP=168.042;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:33:33,0:33:1338:0:0:0,-9.93399,-119.485 0/0:21:21,0:21:838:0:0:0,-6.32163,-74.9515 0/0:18:18,0:18:721:0:0:0,-5.41854,-64.507 0/1:10:4,6:4:164:6:229:-17.9583,0,-12.1396 dDocent_Contig_16294 51 . C A 135.788 . AB=0.194444;ABP=32.2045;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=157;DPB=157;DPRA=1.7069;EPP=20.3821;EPPR=309.421;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.932886;PAO=0;PQA=0;PQR=0;PRO=0;QA=322;QR=5927;RO=149;RPL=8;RPP=20.3821;RPPR=309.421;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=149;SRP=326.56;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:46:46,0:46:1817:0:0:0,-13.8474,-163.743 0/0:63:62,1:62:2462:1:36:0,-15.3666,-218.124 0/1:36:29,7:29:1166:7:286:-15.2777,0,-94.3812 0/0:12:12,0:12:482:0:0:0,-3.61236,-43.7312 dDocent_Contig_16296 9 . C T 42.2487 . AB=0.12;ABP=65.7224;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X;DP=172;DPB=172;DPRA=1.73016;EPP=22.5536;EPPR=356.96;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.1902;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.110429;PAO=0;PQA=0;PQR=0;PRO=0;QA=340;QR=6260;RO=163;RPL=0;RPP=22.5536;RPPR=356.96;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=163;SRP=356.96;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:59:56,3:56:2133:3:111:0,-7.40799,-179.59 0/1:50:44,6:44:1708:6:229:-5.92381,0,-138.9 0/0:45:45,0:45:1726:0:0:0,-13.5463,-154.659 0/0:18:18,0:18:693:0:0:0,-5.41854,-62.7026 dDocent_Contig_16297 9 . C A 86.197 . AB=0.238095;ABP=15.5221;AC=2;AF=0.25;AN=8;AO=5;CIGAR=1X3M1X;DP=49;DPB=49;DPRA=0.75;EPP=13.8677;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=54;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=195;QR=1719;RO=44;RPL=0;RPP=13.8677;RPPR=98.5551;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:6:5,1:5:200:1:40:-2.17687,0,-16.5739 0|1:15:11,4:11:435:4:155:-9.77393,0,-34.9905 0|0:13:13,0:13:508:0:0:0,-3.91339,-46.0666 0|0:15:15,0:15:576:0:0:0,-4.51545,-52.1769 dDocent_Contig_16298 10 . G A 457.228 . AB=0.407407;ABP=5.02092;AC=5;AF=0.625;AN=8;AO=16;CIGAR=1X;DP=32;DPB=32;DPRA=0;EPP=37.7539;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=0.6875;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=641;QR=629;RO=16;RPL=0;RPP=37.7539;RPPR=37.7539;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:5,7:5:194:7:279:-21.8679,0,-14.2199 1/1:5:0,5:0:0:5:199:-18.2874,-1.50515,0 0/1:4:3,1:3:113:1:41:-2.89045,0,-9.3319 0/1:11:8,3:8:322:3:122:-8.06116,0,-26.0365 dDocent_Contig_16299 126 . T C 81.2597 . AB=0.416667;ABP=3.73412;AC=2;AF=0.25;AN=8;AO=9;CIGAR=1X;DP=74;DPB=74;DPRA=0.787879;EPP=22.5536;EPPR=144.156;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=264;QR=2256;RO=65;RPL=0;RPP=22.5536;RPPR=144.156;RPR=9;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=144.156;SRR=65;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:40:36,4:36:1273:4:103:0,-2.51538,-105.344 0/0:22:22,0:22:756:0:0:0,-6.62266,-68.356 0/1:6:4,2:4:145:2:68:-4.65175,0,-11.5994 0/1:6:3,3:3:82:3:93:-6.8719,0,-5.8431 dDocent_Contig_16300 18 . G A 42.7856 . AB=0.176471;ABP=18.4661;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=197;DPB=197;DPRA=0.23125;EPP=11.6962;EPPR=422.104;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=157;QR=7614;RO=193;RPL=0;RPP=11.6962;RPPR=422.104;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=193;SRP=422.104;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:95:95,0:95:3761:0:0:0,-28.5978,-338.511 0/0:65:65,0:65:2556:0:0:0,-19.5669,-230.171 0/1:17:14,3:14:535:3:119:-5.9775,0,-43.3634 0/0:20:19,1:19:762:1:38:0,-2.22333,-65.1039 dDocent_Contig_16301 8 . C T 99.0047 . AB=0.142857;ABP=26.2761;AC=3;AF=0.375;AN=8;AO=3;CIGAR=2X14M;DP=34;DPB=34;DPRA=2.1;EPP=9.52472;EPPR=46.4397;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=4;NUMALT=5;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=116;QR=774;RO=20;RPL=0;RPP=9.52472;RPPR=46.4397;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:8:4,0,0,3,0,0:4:156:0,0,3,0,0:0,0,63,0,0:-2.89057,-4.09469,-16.9938,-4.09469,-16.9938,-16.9938,0,-12.8311,-12.8311,-11.928,-4.09469,-16.9938,-16.9938,-12.8311,-16.9938,-4.09469,-16.9938,-16.9938,-12.8311,-16.9938,-16.9938 0|1:11:5,2,2,0,0,2:5:191:2,2,0,0,2:62,67,0,0,78:-4.92902,-1.47511,-16.5539,-1.01295,-11.7407,-16.0987,-6.43417,-17.156,-16.7008,-22.121,-6.43417,-17.156,-16.7008,-22.121,-22.121,0,-10.7395,-10.2827,-15.703,-15.703,-15.101 0|0:5:5,0,0,0,0,0:5:189:0,0,0,0,0:0,0,0,0,0:0,-1.50515,-17.3737,-1.50515,-17.3737,-17.3737,-1.50515,-17.3737,-17.3737,-17.3737,-1.50515,-17.3737,-17.3737,-17.3737,-17.3737,-1.50515,-17.3737,-17.3737,-17.3737,-17.3737,-17.3737 0|1:10:6,0,0,0,3,1:6:238:0,0,0,3,1:0,0,0,113,38:-7.45124,-9.25742,-28.8609,-9.25742,-28.8609,-28.8609,-9.25742,-28.8609,-28.8609,-28.8609,0,-19.6063,-19.6063,-19.6063,-18.7032,-6.14008,-25.7454,-25.7454,-25.7454,-16.4921,-25.4444 dDocent_Contig_16302 11 . A G 30.3096 . AB=0.285714;ABP=5.80219;AC=1;AF=0.25;AN=4;AO=2;CIGAR=1X2M1X;DP=15;DPB=15;DPRA=0.875;EPP=7.35324;EPPR=31.2394;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=72;QR=509;RO=13;RPL=0;RPP=7.35324;RPPR=31.2394;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=13;SRP=31.2394;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:7:5,2:5:193:2:72:-4.72951,0,-15.6315 .:.:.:.:.:.:.:. 0|0:8:8,0:8:316:0:0:0,-2.40824,-28.8058 .:.:.:.:.:.:.:. dDocent_Contig_16303 16 . A G 1294.34 . AB=0.288288;ABP=46.2246;AC=5;AF=0.625;AN=8;AO=49;CIGAR=1X;DP=128;DPB=128;DPRA=0;EPP=109.412;EPPR=174.557;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1839;QR=2964;RO=79;RPL=0;RPP=109.412;RPPR=174.557;RPR=49;RUN=1;SAF=49;SAP=109.412;SAR=0;SRF=79;SRP=174.557;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:17:0,17:0:0:17:637:-57.6633,-5.11751,0 0/1:43:39,4:39:1429:4:147:-0.644211,0,-115.946 0/1:53:36,17:36:1381:17:636:-41.6166,0,-108.62 0/1:15:4,11:4:154:11:419:-33.5469,0,-9.71801 dDocent_Contig_16304 25 . C T 1424.46 . AB=0.26087;ABP=71.5533;AC=2;AF=0.25;AN=8;AO=36;CIGAR=1X2M1D1M;DP=138;DPB=130.8;DPRA=0;EPP=81.1833;EPPR=122.441;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.972222;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1395;QR=2137;RO=55;RPL=0;RPP=81.1833;RPPR=122.441;RPR=36;RUN=1;SAF=36;SAP=81.1833;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:53:26,15,12:26:1012:15,12:569,483:-38.8024,0,-78.638,-6.81203,-43.3424,-86.3684 1|0:50:14,16,20:14:543:16,20:634,770:-66.5705,-18.5966,-58.3916,-7.58134,0,-46.1671 0|0:13:4,3,6:4:159:3,6:111,235:-18.1318,-10.2638,-22.4542,0,-4.03918,-11.3006 0|0:22:11,2,9:11:423:2,9:81,360:-26.3393,-22.9705,-57.0843,0,-28.0247,-31.9978 dDocent_Contig_16305 19 . C A 350.924 . AB=0.3125;ABP=17.6677;AC=3;AF=0.5;AN=6;AO=15;CIGAR=1X1M1X4M;DP=48;DPB=48;DPRA=0;EPP=35.5824;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=597;QR=1211;RO=31;RPL=0;RPP=35.5824;RPPR=70.3259;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. 0|1:16:10,6,0:10:396:6,0:238,0:-16.9768,0,-31.183,-19.9871,-32.9891,-52.5802 0|1:22:14,6,2:14:540:6,2:241,80:-15.6461,0,-42.524,-13.2708,-37.7382,-57.0002 0|1:10:7,3,0:7:275:3,0:118,0:-7.99242,0,-22.1086,-10.0996,-23.0117,-32.7185 dDocent_Contig_16306 21 . T C 182.278 . AB=0.181818;ABP=22.3561;AC=3;AF=0.375;AN=8;AO=7;CIGAR=1X;DP=37;DPB=37;DPRA=2.08333;EPP=18.2106;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=283;QR=1143;RO=30;RPL=0;RPP=18.2106;RPPR=68.1545;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:18,4:18:678:4:161:-8.25282,0,-54.7215 0/0:10:10,0:10:389:0:0:0,-3.0103,-35.3645 0/0:2:2,0:2:76:0:0:0,-0.60206,-7.21467 1/1:3:0,3:0:0:3:122:-11.3725,-0.90309,0 dDocent_Contig_16307 23 . C T 231.002 . AB=0.529412;ABP=3.13803;AC=2;AF=0.25;AN=8;AO=9;CIGAR=1X;DP=45;DPB=45;DPRA=0.607143;EPP=22.5536;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=343;QR=1415;RO=36;RPL=0;RPP=22.5536;RPPR=81.1833;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:12:12,0:12:482:0:0:0,-3.61236,-43.7323 0/0:16:16,0:16:614:0:0:0,-4.81648,-55.5934 0/1:10:4,6:4:159:6:224:-17.51,0,-11.6817 0/1:7:4,3:4:160:3:119:-8.98818,0,-12.6766 dDocent_Contig_16308 118 . C T 907.088 . AB=0.610169;ABP=9.23028;AC=4;AF=0.5;AN=8;AO=37;CIGAR=1X;DP=62;DPB=62;DPRA=10;EPP=83.3548;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1233;QR=768;RO=25;RPL=0;RPP=83.3548;RPPR=57.2971;RPR=37;RUN=1;SAF=0;SAP=83.3548;SAR=37;SRF=0;SRP=57.2971;SRR=25;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:13,5:13:403:5:177:-10.8584,0,-31.1503 0/1:41:10,31:10:295:31:1031:-80.7473,0,-14.4945 0/0:2:2,0:2:70:0:0:0,-0.60206,-6.6474 1/1:1:0,1:0:0:1:25:-2.49986,-0.30103,0 dDocent_Contig_16309 115 . G A 64.3473 . AB=0.05;ABP=73.366;AC=0;AF=0;AN=8;AO=2;CIGAR=1X2M1X2M1X2M1X2M1X;DP=113;DPB=113;DPRA=1.33333;EPP=7.35324;EPPR=185.414;GTI=0;LEN=1;MEANALT=4;MQM=57;MQMR=60;NS=4;NUMALT=5;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=59;QR=2756;RO=84;RPL=0;RPP=7.35324;RPPR=185.414;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=185.414;SRR=84;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:40:30,2,6,0,0,0:30:1001:2,6,0,0,0:59,197,0,0,0:-6.50736,-10.8318,-91.294,0,-76.3995,-79.2975,-15.5383,-91.8961,-81.1037,-96.6006,-15.5383,-91.8961,-81.1037,-96.6006,-96.6006,-15.5383,-91.8961,-81.1037,-96.6006,-96.6006,-96.6006 0|0:25:16,0,2,2,3,0:16:533:0,2,2,3,0:0,68,67,100,0:-3.29212,-8.1086,-51.2663,-2.7584,-45.9228,-45.3207,-2.67372,-45.839,-40.4954,-45.237,0,-43.1706,-37.8269,-37.7431,-42.2675,-8.1086,-51.2663,-45.9228,-45.839,-43.1706,-51.2663 0|0:30:24,0,0,0,2,2:24:777:0,0,0,2,2:0,0,0,67,14:0,-7.22472,-70.029,-7.22472,-70.029,-70.029,-7.22472,-70.029,-70.029,-70.029,-1.7194,-64.5999,-64.5999,-64.5999,-63.9979,-6.6201,-69.3871,-69.3871,-69.3871,-63.959,-68.785 0|0:18:14,0,0,1,2,0:14:445:0,0,1,2,0:0,0,33,69,0:-1.41877,-5.63319,-41.4579,-5.63319,-41.4579,-41.4579,-2.96083,-38.7889,-38.7889,-38.4879,0,-35.8487,-35.8487,-33.1795,-35.2467,-5.63319,-41.4579,-41.4579,-38.7889,-35.8487,-41.4579 dDocent_Contig_16311 42 . G T 47.3215 . AB=0.176471;ABP=18.4661;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=30;DPB=30;DPRA=2.61538;EPP=9.52472;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=1071;RO=27;RPL=0;RPP=9.52472;RPPR=61.6401;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:14,3:14:545:3:122:-6.25498,0,-44.2672 0/0:6:6,0:6:244:0:0:0,-1.80618,-22.3388 0/0:7:7,0:7:282:0:0:0,-2.10721,-25.7532 ./.:.:.:.:.:.:.:. dDocent_Contig_16312 114 . C T 33.6393 . AB=0.2;ABP=14.7363;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=34;DPB=34;DPRA=1.57895;EPP=9.52472;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=58.3548;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=104;QR=1012;RO=31;RPL=0;RPP=9.52472;RPPR=70.3259;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=70.3259;SRR=31;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:10:10,0:10:310:0:0:0,-3.0103,-28.2004 0/0:9:9,0:9:308:0:0:0,-2.70927,-25.956 0/1:15:12,3:12:394:3:104:-5.18764,0,-31.261 ./.:.:.:.:.:.:.:. dDocent_Contig_16313 8 . C T 720.455 . AB=0.348837;ABP=20.0791;AC=4;AF=0.5;AN=8;AO=30;CIGAR=1X;DP=86;DPB=86;DPRA=0;EPP=68.1545;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1154;QR=2174;RO=56;RPL=0;RPP=68.1545;RPPR=124.613;RPR=30;RUN=1;SAF=30;SAP=68.1545;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:37:20,17:20:778:17:649:-47.6064,0,-59.21 0/1:30:25,5:25:968:5:195:-8.8933,0,-78.4016 0/1:16:10,6:10:389:6:232:-16.4325,0,-30.5519 0/1:3:1,2:1:39:2:78:-6.50038,0,-2.99347 dDocent_Contig_16316 13 . C T 449.321 . AB=0.243697;ABP=70.9099;AC=3;AF=0.375;AN=8;AO=31;CIGAR=1X3M;DP=140;DPB=140;DPRA=0;EPP=70.3259;EPPR=200.614;GTI=0;LEN=1;MEANALT=2.75;MQM=33.5806;MQMR=59.9121;NS=4;NUMALT=3;ODDS=0;PAIRED=0.967742;PAIREDR=0.89011;PAO=0;PQA=0;PQR=0;PRO=0;QA=961;QR=3552;RO=91;RPL=0;RPP=70.3259;RPPR=200.614;RPR=31;RUN=1;SAF=31;SAP=70.3259;SAR=0;SRF=91;SRP=200.614;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:55:31,3,19,2:31:1215:3,19,2:119,601,81:-35.1769,-37.6788,-136.751,0,-93.2037,-94.3062,-41.1679,-134.312,-96.6879,-140.536 0|1:42:30,6,3,3:30:1168:6,3,3:216,90,119:-4.10555,0,-94.2549,-6.75905,-89.6859,-101.918,-4.74552,-87.6903,-94.449,-99.9229 0|0:21:17,2,2,0:17:664:2,2,0:58,60,0:0,-0.580416,-54.6715,-0.868617,-51.0297,-54.9461,-5.11751,-55.2735,-55.5482,-59.7942 0|1:22:13,0,7,1:13:505:0,7,1:0,210,37:-11.0463,-14.9597,-56.5219,0,-41.6534,-39.5462,-12.5523,-54.122,-39.2563,-53.8209 dDocent_Contig_16317 98 . N G 57.9484 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=61;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:61:-5.79376,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_16318 14 . A C 444.63 . AB=0.294118;ABP=21.7871;AC=3;AF=0.375;AN=8;AO=17;CIGAR=2X;DP=81;DPB=81;DPRA=1.89286;EPP=39.9253;EPPR=141.985;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=672;QR=2560;RO=64;RPL=0;RPP=39.9253;RPPR=141.985;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=64;SRP=141.985;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:51:36,15:36:1447:15:591:-38.1749,0,-115.127 0|0:16:16,0:16:630:0:0:0,-4.81648,-57.0242 0|0:12:12,0:12:483:0:0:0,-3.61236,-43.8198 1|1:2:0,2:0:0:2:81:-7.68573,-0.60206,0 dDocent_Contig_16319 81 . C T 101.92 . AB=0.230769;ABP=19.3799;AC=3;AF=0.375;AN=8;AO=6;CIGAR=1X;DP=36;DPB=36;DPRA=0.866667;EPP=16.0391;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.733333;PAO=0;PQA=0;PQR=0;PRO=0;QA=232;QR=1134;RO=30;RPL=6;RPP=16.0391;RPPR=68.1545;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:10,1:10:382:1:39:-0.585235,0,-31.422 0/1:8:4,4:4:155:4:154:-11.8252,0,-11.9172 0/0:10:10,0:10:381:0:0:0,-3.0103,-34.6425 0/1:7:6,1:6:216:1:39:-1.78935,0,-17.677 dDocent_Contig_16321 69 . C A 49.8526 . AB=0.5;ABP=3.0103;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=35;DPB=35;DPRA=1.1875;EPP=11.6962;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=128;QR=1192;RO=31;RPL=4;RPP=11.6962;RPPR=70.3259;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:9:9,0:9:337:0:0:0,-2.70927,-30.6799 0/1:6:3,3:3:115:3:91:-6.68356,0,-8.91792 0/0:7:7,0:7:282:0:0:0,-2.10721,-25.753 0/0:13:12,1:12:458:1:37:0,-0.215561,-37.868 dDocent_Contig_16322 24 . A G 2892.95 . AB=0.365782;ABP=56.0544;AC=4;AF=0.5;AN=8;AO=124;CIGAR=1X;DP=339;DPB=339;DPRA=0;EPP=272.273;EPPR=469.877;GTI=0;LEN=1;MEANALT=1;MQM=39.7339;MQMR=39.9395;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4752;QR=8314;RO=215;RPL=0;RPP=272.273;RPPR=469.877;RPR=124;RUN=1;SAF=124;SAP=272.273;SAR=0;SRF=215;SRP=469.877;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:83:44,39:44:1699:39:1457:-98.6123,0,-118.138 0/1:65:42,23:42:1628:23:876:-54.6948,0,-117.627 0/1:126:82,44:82:3163:44:1722:-104.179,0,-227.35 0/1:65:47,18:47:1824:18:697:-39.2069,0,-134.071 dDocent_Contig_16323 7 . A C 290.635 . AB=0.666667;ABP=6.62942;AC=1;AF=0.125;AN=8;AO=11;CIGAR=1X;DP=62;DPB=62;DPRA=1.2963;EPP=26.8965;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=0.818182;PAIREDR=0.72549;PAO=0;PQA=0;PQR=0;PRO=0;QA=427;QR=1947;RO=51;RPL=0;RPP=26.8965;RPPR=113.755;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:14:14,0:14:531:0:0:0,-4.21442,-48.1328 0/1:15:5,10:5:190:10:388:-30.7624,0,-12.9517 0/0:20:19,1:19:722:1:39:0,-2.12404,-61.4124 0/0:13:13,0:13:504:0:0:0,-3.91339,-45.7089 dDocent_Contig_16324 25 . T C 539.263 . AB=0.428571;ABP=5.18177;AC=3;AF=0.375;AN=8;AO=21;CIGAR=1X;DP=55;DPB=55;DPRA=2.72222;EPP=48.6112;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.380952;PAIREDR=0.470588;PAO=0;PQA=0;PQR=0;PRO=0;QA=811;QR=1358;RO=34;RPL=0;RPP=48.6112;RPPR=76.8404;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:10,8:10:405:8:290:-21.0203,0,-31.3915 0/1:14:9,5:9:349:5:199:-14.073,0,-27.5477 0/1:17:9,8:9:359:8:322:-24.2308,0,-27.5522 0/0:6:6,0:6:245:0:0:0,-1.80618,-22.4295 dDocent_Contig_16325 11 . T A 213.51 . AB=0.323529;ABP=12.2071;AC=2;AF=0.25;AN=8;AO=16;CIGAR=1X2M;DP=86;DPB=86;DPRA=0;EPP=37.7539;EPPR=139.813;GTI=0;LEN=1;MEANALT=1.66667;MQM=41.125;MQMR=60;NS=4;NUMALT=3;ODDS=6.93889e-18;PAIRED=0.4375;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=498;QR=2512;RO=63;RPL=0;RPP=37.7539;RPPR=139.813;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=63;SRP=139.813;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:36:31,0,0,5:31:1240:0,0,5:0,0,122:0,-9.33193,-111.629,-9.33193,-111.629,-111.629,-0.717022,-103.259,-103.259,-101.754 0|1:10:4,0,0,5:4:162:0,0,5:0,0,135:-8.22361,-9.42773,-22.8386,-9.42773,-22.8386,-22.8386,0,-13.3544,-13.3544,-11.8492 0|0:16:14,0,2,0:14:552:0,2,0:0,81,0:-2.86925,-7.08367,-52.4872,0,-45.8067,-45.2046,-7.08367,-52.4872,-45.8067,-52.4872 0|1:24:14,4,0,6:14:558:4,0,6:162,0,241:-15.6414,-6.49617,-51.2369,-19.8558,-52.441,-65.8002,0,-32.5822,-45.942,-44.1358 dDocent_Contig_16326 24 . T G 1081.1 . AB=0.236364;ABP=36.2141;AC=6;AF=0.75;AN=8;AO=13;CIGAR=1X1M;DP=65;DPB=65;DPRA=1.83333;EPP=31.2394;EPPR=37.7539;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.692308;PAIREDR=0.8125;PAO=0;PQA=0;PQR=0;PRO=0;QA=513;QR=639;RO=16;RPL=0;RPP=31.2394;RPPR=37.7539;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:25:7,13,5:7:285:13,5:492,204:-38.2058,0,-19.5967,-23.4735,-6.67831,-45.4889 1|1:16:3,8,5:3:119:8,5:279,189:-27.4387,-5.67417,-13.0686,-12.8422,0,-21.1457 0|1:14:6,5,3:6:235:5,3:191,120:-13.8542,0,-17.8099,-5.76905,-9.42757,-24.1917 1|1:10:0,10,0:0:0:10,0:374,0:-34.0093,-3.0103,0,-34.0093,-3.0103,-34.0093 dDocent_Contig_16328 13 . G A 71.0553 . AB=0.122807;ABP=73.4498;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=128;DPB=128;DPRA=2.40845;EPP=18.2106;EPPR=265.758;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.983471;PAO=0;PQA=0;PQR=0;PRO=0;QA=281;QR=4860;RO=121;RPL=0;RPP=18.2106;RPPR=265.758;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=121;SRP=265.758;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:57:50,7:50:1991:7:281:-8.50347,0,-162.221 0/0:35:35,0:35:1412:0:0:0,-10.536,-127.332 0/0:15:15,0:15:607:0:0:0,-4.51545,-54.9678 0/0:21:21,0:21:850:0:0:0,-6.32163,-76.8118 dDocent_Contig_16330 25 . T C 1072.47 . AB=0.293333;ABP=58.6579;AC=3;AF=0.375;AN=8;AO=44;CIGAR=1X;DP=201;DPB=201;DPRA=0.980392;EPP=98.5551;EPPR=343.931;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1742;QR=6195;RO=157;RPL=0;RPP=98.5551;RPPR=343.931;RPR=44;RUN=1;SAF=44;SAP=98.5551;SAR=0;SRF=157;SRP=343.931;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:51:51,0:51:2007:0:0:0,-15.3525,-180.834 0/1:105:70,35:70:2786:35:1383:-93.1184,0,-219.257 0/1:22:16,6:16:606:6:237:-15.0777,0,-48.2391 0/1:23:20,3:20:796:3:122:-4.4488,0,-65.0331 dDocent_Contig_16331 50 . T G 230.107 . AB=0.270833;ABP=24.906;AC=4;AF=0.5;AN=8;AO=13;CIGAR=2X;DP=48;DPB=48;DPRA=0;EPP=31.2394;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=57.5385;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.615385;PAIREDR=0.685714;PAO=0;PQA=0;PQR=0;PRO=0;QA=469;QR=1261;RO=35;RPL=13;RPP=31.2394;RPPR=79.0118;RPR=0;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:25:16,9:16:603:9:323:-21.8838,0,-47.0829 0|1:9:7,2:7:243:2:73:-4.08339,0,-19.4969 0|1:10:9,1:9:311:1:37:-0.687529,0,-25.3082 0|1:4:3,1:3:104:1:36:-2.39415,0,-8.49766 dDocent_Contig_16332 163 . C T 337.918 . AB=0.347826;ABP=7.63648;AC=6;AF=0.75;AN=8;AO=13;CIGAR=1X;DP=28;DPB=28;DPRA=0;EPP=31.2394;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=474;QR=581;RO=15;RPL=13;RPP=31.2394;RPPR=35.5824;RPR=0;RUN=1;SAF=0;SAP=31.2394;SAR=13;SRF=0;SRP=35.5824;SRR=15;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1:0,1:0:0:1:41:-4.09457,-0.30103,0 1/1:4:0,4:0:0:4:130:-12.011,-1.20412,0 0/1:12:7,5:7:278:5:182:-13.115,0,-21.7768 0/1:11:8,3:8:303:3:121:-7.96866,0,-24.3103 dDocent_Contig_16333 70 . A C 47.4171 . AB=0.230769;ABP=11.1951;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=38;DPB=38;DPRA=1.56;EPP=9.52472;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=111;QR=1284;RO=35;RPL=3;RPP=9.52472;RPPR=79.0118;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:3:3,0:3:111:0:0:0,-0.90309,-10.3539 0/0:7:7,0:7:253:0:0:0,-2.10721,-23.119 0/1:13:10,3:10:366:3:111:-6.44053,0,-29.3743 0/0:15:15,0:15:554:0:0:0,-4.51545,-50.1987 dDocent_Contig_16334 23 . G A 376.011 . AB=0.764706;ABP=13.3567;AC=2;AF=0.25;AN=8;AO=13;CIGAR=1X2M1X;DP=35;DPB=35;DPRA=0.944444;EPP=31.2394;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.0769231;PAIREDR=0.636364;PAO=0;PQA=0;PQR=0;PRO=0;QA=504;QR=860;RO=22;RPL=0;RPP=31.2394;RPPR=50.7827;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:8:8,0:8:317:0:0:0,-2.40824,-28.8968 0|0:10:10,0:10:383:0:0:0,-3.0103,-34.8208 0|1:15:3,12:3:121:12:463:-37.4976,0,-6.76475 0|1:2:1,1:1:39:1:41:-3.49251,0,-3.2945 dDocent_Contig_16336 116 . A G 108.771 . AB=0.25;ABP=20.3821;AC=2;AF=0.25;AN=8;AO=8;CIGAR=1X;DP=52;DPB=52;DPRA=1.6;EPP=20.3821;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=258;QR=1136;RO=43;RPL=0;RPP=20.3821;RPPR=96.3836;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=96.3836;SRR=43;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:21,3:21:556:3:103:-2.38525,0,-43.0738 0/0:16:15,0:15:386:0:0:0,-4.51545,-34.9121 0/1:8:3,5:3:93:5:155:-11.8472,0,-6.27014 0/0:4:4,0:4:101:0:0:0,-1.20412,-9.34168 dDocent_Contig_16337 7 . A T 99.4138 . AB=0.179487;ABP=37.8095;AC=2;AF=0.25;AN=8;AO=10;CIGAR=1X2M1X;DP=126;DPB=126;DPRA=0;EPP=24.725;EPPR=254.901;GTI=0;LEN=1;MEANALT=1;MQM=53.9;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.948276;PAO=0;PQA=0;PQR=0;PRO=0;QA=387;QR=4408;RO=116;RPL=0;RPP=24.725;RPPR=254.901;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=116;SRP=254.901;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:62:61,1:61:2326:1:39:0,-14.7774,-205.673 0|1:25:21,4:21:795:4:155:-6.76173,0,-64.3495 0|0:25:23,2:23:868:2:77:0,-0.233827,-71.149 0|1:14:11,3:11:419:3:116:-6.57696,0,-33.8473 dDocent_Contig_16338 21 . T G 796.94 . AB=0.355556;ABP=19.3205;AC=4;AF=0.5;AN=8;AO=32;CIGAR=1X;DP=90;DPB=90;DPRA=0;EPP=64.083;EPPR=128.956;GTI=0;LEN=1;MEANALT=1;MQM=52.9375;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=0.25;PAIREDR=0.896552;PAO=0;PQA=0;PQR=0;PRO=0;QA=1273;QR=2349;RO=58;RPL=0;RPP=72.4974;RPPR=128.956;RPR=32;RUN=1;SAF=31;SAP=64.083;SAR=1;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:34:23,11:23:935:11:441:-28.8902,0,-74.2158 0/1:22:11,11:11:448:11:434:-32.5941,0,-34.0533 0/1:27:21,6:21:843:6:237:-13.071,0,-68.0524 0/1:7:3,4:3:123:4:161:-12.5366,0,-9.35758 dDocent_Contig_16339 18 . G A 179.563 . AB=0.258065;ABP=18.771;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X2M1X;DP=154;DPB=154;DPRA=0.756098;EPP=20.3821;EPPR=320.045;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=318;QR=5755;RO=146;RPL=0;RPP=20.3821;RPPR=320.045;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=146;SRP=320.045;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:24:24,0:24:960:0:0:0,-7.22472,-86.7026 0|0:49:49,0:49:1940:0:0:0,-14.7505,-174.81 0|0:50:50,0:50:1948:0:0:0,-15.0515,-175.529 0|1:31:23,8:23:907:8:318:-19.6553,0,-72.6045 dDocent_Contig_16340 30 . A G 1790.72 . AB=0.543103;ABP=4.88226;AC=4;AF=0.5;AN=8;AO=63;CIGAR=1X;DP=116;DPB=116;DPRA=0;EPP=139.813;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=0.650794;PAIREDR=0.641509;PAO=0;PQA=0;PQR=0;PRO=0;QA=2445;QR=2117;RO=53;RPL=0;RPP=139.813;RPPR=118.098;RPR=63;RUN=1;SAF=63;SAP=139.813;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:35:20,15:20:799:15:588:-42.7195,0,-61.689 0/1:36:9,27:9:359:27:1015:-80.8078,0,-21.835 0/1:15:11,4:11:435:4:158:-10.0845,0,-34.9856 0/1:30:13,17:13:524:17:684:-52.8578,0,-38.4753 dDocent_Contig_16341 36 . A G 98.1341 . AB=0.5;ABP=3.0103;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=27;DPB=27;DPRA=0.842105;EPP=11.6962;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=8.67362e-19;PAIRED=0;PAIREDR=0.869565;PAO=0;PQA=0;PQR=0;PRO=0;QA=152;QR=905;RO=23;RPL=0;RPP=11.6962;RPPR=52.9542;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:8:8,0:8:315:0:0:0,-2.40824,-28.711 0/1:8:4,4:4:152:4:152:-11.6373,0,-11.6382 ./.:.:.:.:.:.:.:. 0/0:11:11,0:11:438:0:0:0,-3.31133,-39.7747 dDocent_Contig_16342 13 . A G 144.278 . AB=0.186047;ABP=39.8243;AC=2;AF=0.25;AN=8;AO=8;CIGAR=1X;DP=51;DPB=51;DPRA=5.375;EPP=20.3821;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=57.7209;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.953488;PAO=0;PQA=0;PQR=0;PRO=0;QA=320;QR=1690;RO=43;RPL=0;RPP=20.3821;RPPR=96.3836;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:33:26,7:26:1022:7:282:-15.8186,0,-77.0088 0/1:10:9,1:9:357:1:38:-0.786969,0,-29.4774 0/0:7:7,0:7:270:0:0:0,-2.10721,-24.6605 0/0:1:1,0:1:41:0:0:0,-0.30103,-4.09457 dDocent_Contig_16344 9 . C G 32.1402 . AB=0.109375;ABP=87.8334;AC=3;AF=0.375;AN=8;AO=7;CIGAR=1X;DP=85;DPB=85;DPRA=1.01587;EPP=18.2106;EPPR=172.385;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.428571;PAIREDR=0.692308;PAO=0;PQA=0;PQR=0;PRO=0;QA=269;QR=3014;RO=78;RPL=0;RPP=18.2106;RPPR=172.385;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=78;SRP=172.385;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:7,2:7:271:2:77:-4.59987,0,-22.047 0/0:21:21,0:21:811:0:0:0,-6.32163,-73.3156 0/1:33:30,3:30:1155:3:115:-0.790905,0,-94.3168 0/1:22:20,2:20:777:2:77:-0.686482,0,-63.6354 dDocent_Contig_16345 9 . C T 791.661 . AB=0.256757;ABP=79.0705;AC=4;AF=0.5;AN=8;AO=38;CIGAR=1X;DP=148;DPB=148;DPRA=0;EPP=85.5263;EPPR=224.816;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.710526;PAIREDR=0.8;PAO=0;PQA=0;PQR=0;PRO=0;QA=1441;QR=4198;RO=110;RPL=0;RPP=85.5263;RPPR=241.872;RPR=38;RUN=1;SAF=38;SAP=85.5263;SAR=0;SRF=108;SRP=224.816;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:63:52,11:52:1964:11:424:-19.5486,0,-158.038 0/1:28:23,5:23:888:5:193:-9.31252,0,-71.8102 0/1:40:22,18:22:852:18:669:-48.4951,0,-64.9608 0/1:17:13,4:13:494:4:155:-9.20793,0,-39.6881 dDocent_Contig_16346 16 . G T 1410.06 . AB=0.582278;ABP=7.6556;AC=2;AF=0.25;AN=8;AO=46;CIGAR=1X;DP=141;DPB=141;DPRA=1.27419;EPP=102.898;EPPR=209.3;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.891304;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1862;QR=3793;RO=95;RPL=0;RPP=102.898;RPPR=209.3;RPR=46;RUN=1;SAF=46;SAP=102.898;SAR=0;SRF=95;SRP=209.3;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:47:47,0:47:1876:0:0:0,-14.1484,-169.043 0/1:40:22,18:22:878:18:724:-53.4456,0,-67.2868 0/1:39:11,28:11:450:28:1138:-90.9583,0,-29.1156 0/0:15:15,0:15:589:0:0:0,-4.51545,-53.3449 dDocent_Contig_16347 68 . T C 328.144 . AB=0.40625;ABP=5.45321;AC=3;AF=0.375;AN=8;AO=13;CIGAR=1X;DP=69;DPB=69;DPRA=0.288288;EPP=31.2394;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=519;QR=2157;RO=56;RPL=13;RPP=31.2394;RPPR=124.613;RPR=0;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:37:37,0:37:1438:0:0:0,-11.1381,-129.671 0/1:18:11,7:11:426:7:283:-20.4245,0,-33.2653 0/1:8:6,2:6:213:2:78:-4.99454,0,-17.1043 0/1:6:2,4:2:80:4:158:-12.7932,0,-5.78561 dDocent_Contig_16348 15 . T A 116.422 . AB=0.181818;ABP=41.702;AC=2;AF=0.25;AN=8;AO=8;CIGAR=1X;DP=75;DPB=75;DPRA=1.41935;EPP=20.3821;EPPR=148.499;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=306;QR=2726;RO=67;RPL=0;RPP=20.3821;RPPR=148.499;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=67;SRP=148.499;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:17:17,0:17:690:0:0:0,-5.11751,-62.4282 0/0:14:14,0:14:571:0:0:0,-4.21442,-51.7319 0/1:31:25,6:25:1018:6:227:-11.4534,0,-82.579 0/1:13:11,2:11:447:2:79:-3.58385,0,-36.6725 dDocent_Contig_16350 23 . T C 255.234 . AB=0.255814;ABP=25.2805;AC=1;AF=0.125;AN=8;AO=11;CIGAR=1X;DP=130;DPB=130;DPRA=1.48276;EPP=26.8965;EPPR=261.416;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.815126;PAO=0;PQA=0;PQR=0;PRO=0;QA=439;QR=4716;RO=119;RPL=0;RPP=26.8965;RPPR=261.416;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=119;SRP=261.416;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:43:32,11:32:1260:11:439:-26.9213,0,-100.729 0/0:53:53,0:53:2090:0:0:0,-15.9546,-188.294 0/0:25:25,0:25:1006:0:0:0,-7.52575,-90.8365 0/0:9:9,0:9:360:0:0:0,-2.70927,-32.764 dDocent_Contig_16351 16 . A T 634.769 . AB=0.359375;ABP=14.0034;AC=3;AF=0.375;AN=8;AO=24;CIGAR=1X2M;DP=111;DPB=111;DPRA=0;EPP=55.1256;EPPR=137.275;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=0.875;PAIREDR=0.883117;PAO=0;PQA=0;PQR=0;PRO=0;QA=965;QR=3045;RO=77;RPL=0;RPP=55.1256;RPPR=170.214;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=73;SRP=137.275;SRR=4;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:45:20,4,21,0:20:796:4,21,0:161,843,0:-63.4378,-56.1891,-120.526,0,-52.2695,-59.2178,-69.4584,-121.731,-65.5394,-135 0|0:19:18,0,1,0:18:713:0,1,0:0,41,0:0,-5.41854,-64.0903,-1.625,-60.7055,-60.4044,-5.41854,-64.0903,-60.7055,-64.0903 0|1:28:22,3,0,3:22:873:3,0,3:120,0,120:-3.26238,0,-70.958,-9.88504,-71.861,-81.7464,0,-61.9756,-71.861,-70.958 0|1:19:17,0,2,0:17:663:0,2,0:0,81,0:-1.96616,-7.08367,-61.5635,0,-54.8828,-54.2807,-7.08367,-61.5635,-54.8828,-61.5635 dDocent_Contig_16352 17 . T C 191.636 . AB=0.157895;ABP=60.9543;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1M1X2M;DP=65;DPB=62;DPRA=7.125;EPP=22.5536;EPPR=111.584;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=353;QR=2008;RO=50;RPL=0;RPP=22.5536;RPPR=111.584;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:43:37,4,2:37:1493:4,2:155,81:-1.58329,0,-121.868,-6.03645,-116.393,-128.523 0|1:14:5,2,7:5:203:2,7:82,272:-20.8225,-15.5548,-31.7023,0,-9.97029,-14.6324 0|0:5:5,0,0:5:198:0,0:0,0:0,-1.50515,-18.1974,-1.50515,-18.1974,-18.1974 0|0:3:3,0,0:3:114:0,0:0,0:0,-0.90309,-10.6318,-0.90309,-10.6318,-10.6318 dDocent_Contig_16353 41 . T G 207.345 . AB=0.175676;ABP=70.6194;AC=3;AF=0.375;AN=8;AO=13;CIGAR=1X;DP=80;DPB=80;DPRA=4.11111;EPP=31.2394;EPPR=148.499;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=521;QR=2669;RO=67;RPL=0;RPP=31.2394;RPPR=148.499;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=67;SRP=148.499;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:39:33,6:33:1295:6:235:-9.78095,0,-105.079 0/1:27:21,6:21:844:6:245:-14.3017,0,-68.1464 0/0:6:6,0:6:246:0:0:0,-1.80618,-22.5201 0/1:8:7,1:7:284:1:41:-1.68633,0,-23.5258 dDocent_Contig_16354 77 . G C 509.055 . AB=0.349206;ABP=15.4532;AC=4;AF=0.5;AN=8;AO=22;CIGAR=1X;DP=63;DPB=63;DPRA=0;EPP=6.56362;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.682927;PAO=0;PQA=0;PQR=0;PRO=0;QA=824;QR=1566;RO=41;RPL=22;RPP=50.7827;RPPR=11.961;RPR=0;RUN=1;SAF=14;SAP=6.56362;SAR=8;SRF=27;SRP=11.961;SRR=14;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:16,2:16:612:2:60:-0.276267,0,-49.9972 0/1:9:7,2:7:274:2:78:-4.69351,0,-22.3131 0/1:29:16,13:16:603:13:498:-36.4327,0,-45.8713 0/1:7:2,5:2:77:5:188:-15.1748,0,-5.20099 dDocent_Contig_16355 36 . T A 59.2906 . AB=0.210526;ABP=16.8392;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X;DP=158;DPB=158;DPRA=1.42222;EPP=22.5536;EPPR=326.56;GTI=0;LEN=1;MEANALT=1;MQM=49.7778;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.555556;PAIREDR=0.919463;PAO=0;PQA=0;PQR=0;PRO=0;QA=363;QR=6006;RO=149;RPL=0;RPP=22.5536;RPPR=326.56;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=149;SRP=326.56;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:46:43,3:43:1742:3:121:0,-2.56739,-145.711 0/1:19:15,4:15:602:4:160:-7.62802,0,-48.7971 0/0:63:61,2:61:2456:2:82:0,-11.6983,-213.907 0/0:30:30,0:30:1206:0:0:0,-9.0309,-108.815 dDocent_Contig_16356 13 . G C 36.7514 . AB=0.1875;ABP=16.582;AC=2;AF=0.25;AN=8;AO=5;CIGAR=1X;DP=83;DPB=83;DPRA=0.341463;EPP=13.8677;EPPR=172.385;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=204;QR=3134;RO=78;RPL=0;RPP=13.8677;RPPR=172.385;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=78;SRP=172.385;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:41:41,0:41:1657:0:0:0,-12.3422,-149.354 0/0:26:24,2:24:960:2:81:0,-0.141046,-79.0157 0/1:12:10,2:10:396:2:82:-4.16732,0,-32.3836 0/1:4:3,1:3:121:1:41:-2.89045,0,-10.0761 dDocent_Contig_16357 79 . C T 259.746 . AB=0.407407;ABP=5.02092;AC=1;AF=0.25;AN=4;AO=11;CIGAR=1X;DP=42;DPB=42;DPRA=1.8;EPP=26.8965;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=394;QR=1068;RO=31;RPL=11;RPP=26.8965;RPPR=70.3259;RPR=0;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:16,11:16:553:11:394:-27.6736,0,-41.9695 0/0:15:15,0:15:515:0:0:0,-4.51545,-46.6766 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_16358 20 . A G 83.1541 . AB=0.172414;ABP=30.0414;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=62;DPB=62;DPRA=2.64706;EPP=16.0391;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.166667;PAIREDR=0.642857;PAO=0;PQA=0;PQR=0;PRO=0;QA=245;QR=2214;RO=56;RPL=0;RPP=16.0391;RPPR=124.613;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:16:15,1:15:590:1:41:0,-0.721913,-49.3404 0/0:7:7,0:7:276:0:0:0,-2.10721,-25.2095 0/0:10:10,0:10:404:0:0:0,-3.0103,-36.7202 0/1:29:24,5:24:944:5:204:-10.0142,0,-76.5316 dDocent_Contig_16359 16 . T A 1189.13 . AB=0.205882;ABP=79.6505;AC=1;AF=0.125;AN=8;AO=21;CIGAR=7M1X10M;DP=149;DPB=149.722;DPRA=0;EPP=48.6112;EPPR=194.1;GTI=0;LEN=1;MEANALT=3.33333;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=822;QR=3438;RO=88;RPL=0;RPP=48.6112;RPPR=194.1;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=88;SRP=194.1;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:47:38,9,0,0:38:1492:9,0,0:340,0,0:-16.8065,0,-120.395,-28.2456,-123.104,-150.969,-28.2456,-123.104,-150.969,-150.969 0|0:51:38,2,9,1:38:1477:2,9,1:77,364,41:-18.6298,-23.7454,-144.52,0,-115.107,-118.721,-26.6823,-141.737,-118.045,-147.759 0|1:37:5,2,11,18:5:190:2,11,18:71,440,701:-76.7813,-72.5044,-87.4822,-42.0359,-51.8348,-54.3054,-20.6843,-30.4829,0,-30.8449 0|0:14:7,0,5,2:7:279:0,5,2:0,197,80:-14.0938,-16.201,-39.1788,0,-22.9753,-21.4701,-9.60915,-32.5882,-16.3848,-31.9861 dDocent_Contig_16361 10 . T C 768.396 . AB=0.211268;ABP=54.4222;AC=1;AF=0.125;AN=8;AO=15;CIGAR=1M1D1X13M;DP=77;DPB=76.0625;DPRA=0;EPP=35.5824;EPPR=81.1833;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.933333;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=580;QR=1428;RO=36;RPL=0;RPP=35.5824;RPPR=81.1833;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:19:5,5,8:5:197:5,8:193,310:-23.9722,-9.62385,-24.3321,0,-0.363719,-13.8095 0|1:26:14,9,3:14:555:9,3:348,107:-24.3928,0,-43.008,-19.8943,-37.0038,-64.6818 0|0:26:16,1,9:16:636:1,9:39,335:-22.5887,-24.1975,-76.277,0,-49.166,-49.6622 0|0:6:1,0,5:1:40:0,5:0,163:-13.1801,-13.4811,-16.7885,0,-3.69465,-2.1895 dDocent_Contig_16362 48 . G A 87.4217 . AB=0.210526;ABP=30.668;AC=3;AF=0.375;AN=8;AO=8;CIGAR=1X;DP=68;DPB=68;DPRA=0.422222;EPP=20.3821;EPPR=133.299;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.983333;PAO=0;PQA=0;PQR=0;PRO=0;QA=273;QR=1802;RO=60;RPL=0;RPP=20.3821;RPPR=133.299;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:4:2,2:2:66:2:67:-5.15736,0,-5.06424 0/1:23:20,3:20:602:3:116:-3.89371,0,-47.5468 0/0:30:30,0:30:890:0:0:0,-9.0309,-80.3707 0/1:11:8,3:8:244:3:90:-5.0874,0,-18.946 dDocent_Contig_16363 19 . G T 3266.06 . AB=0.726562;ABP=60.0793;AC=5;AF=0.625;AN=8;AO=106;CIGAR=1X;DP=141;DPB=141;DPRA=0;EPP=233.186;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=0.924528;PAIREDR=0.942857;PAO=0;PQA=0;PQR=0;PRO=0;QA=4104;QR=1365;RO=35;RPL=0;RPP=233.186;RPPR=79.0118;RPR=106;RUN=1;SAF=106;SAP=233.186;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:13:0,13:0:0:13:515:-46.6979,-3.91339,0 0/1:48:15,33:15:595:33:1303:-103.088,0,-39.439 0/1:46:13,33:13:499:33:1239:-97.9348,0,-31.3903 0/1:34:7,27:7:271:27:1047:-84.2834,0,-14.5188 dDocent_Contig_16364 41 . A G 88.1016 . AB=0.307692;ABP=7.18621;AC=1;AF=0.125;AN=8;AO=4;CIGAR=3X;DP=74;DPB=74;DPRA=0.639344;EPP=11.6962;EPPR=155.013;GTI=0;LEN=1;MEANALT=1;MQM=56.5;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=157;QR=2763;RO=70;RPL=0;RPP=11.6962;RPPR=155.013;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=70;SRP=155.013;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:35:35,0:35:1389:0:0:0,-10.536,-125.274 0|0:21:21,0:21:828:0:0:0,-6.32163,-74.8314 0|1:13:9,4:9:346:4:157:-10.5091,0,-27.5789 0|0:5:5,0:5:200:0:0:0,-1.50515,-18.379 dDocent_Contig_16365 128 . A T 48.9768 . AB=0.25;ABP=11.6962;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1X;DP=28;DPB=28;DPRA=0.666667;EPP=11.6962;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=139;QR=818;RO=24;RPL=0;RPP=11.6962;RPPR=55.1256;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=55.1256;SRR=24;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:12:12,0:12:415:0:0:0,-3.61236,-37.682 0/1:14:11,3:11:368:3:104:-5.48867,0,-29.2293 0/1:2:1,1:1:35:1:35:-2.89657,0,-2.89657 ./.:.:.:.:.:.:.:. dDocent_Contig_16366 170 . A T 76.8739 . AB=0.25;ABP=7.35324;AC=3;AF=0.375;AN=8;AO=5;CIGAR=1X;DP=98;DPB=98;DPRA=0.294872;EPP=13.8677;EPPR=204.957;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=201;QR=3707;RO=93;RPL=5;RPP=13.8677;RPPR=204.957;RPR=0;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=204.957;SRR=93;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:52:52,0:52:2055:0:0:0,-15.6536,-185.128 0/0:37:35,2:35:1408:2:82:0,-3.35843,-119.189 0/1:8:6,2:6:244:2:79:-5.089,0,-19.9306 1/1:1:0,1:0:0:1:40:-3.99568,-0.30103,0 dDocent_Contig_16367 106 . N A 337.197 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=11;CIGAR=2X;DP=11;DPB=11;DPRA=0;EPP=26.8965;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=364;QR=0;RO=0;RPL=0;RPP=26.8965;RPPR=0;RPR=11;RUN=1;SAF=0;SAP=26.8965;SAR=11;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. 1|1:3:0,3:0:0:3:102:-9.51695,-0.90309,0 1|1:8:0,8:0:0:8:262:-23.9014,-2.40824,0 .:.:.:.:.:.:.:. dDocent_Contig_16368 31 . G A 33.7563 . AB=0.15;ABP=24.2907;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=88;DPB=88;DPRA=0.955556;EPP=11.6962;EPPR=185.414;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=153;QR=3345;RO=84;RPL=0;RPP=11.6962;RPPR=185.414;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=84;SRP=185.414;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:36:36,0:36:1438:0:0:0,-10.8371,-129.672 0/0:23:22,1:22:875:1:34:0,-3.52478,-75.6619 0/1:20:17,3:17:673:3:119:-5.07441,0,-54.8803 0/0:9:9,0:9:359:0:0:0,-2.70927,-32.6733 dDocent_Contig_16369 124 . A G 168.413 . AB=0.6;ABP=3.87889;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=25;DPB=25;DPRA=2;EPP=16.0391;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=232;QR=561;RO=19;RPL=0;RPP=16.0391;RPPR=44.2683;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=44.2683;SRR=19;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:4,6:4:95:6:232:-18.2386,0,-5.77647 0/0:5:5,0:5:162:0:0:0,-1.50515,-14.8999 0/0:9:9,0:9:270:0:0:0,-2.70927,-24.594 0/0:1:1,0:1:34:0:0:0,-0.30103,-3.39891 dDocent_Contig_16370 65 . T C 143.695 . AB=0.222222;ABP=21.1059;AC=5;AF=0.625;AN=8;AO=7;CIGAR=1X;DP=28;DPB=28;DPRA=0;EPP=18.2106;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=279;QR=825;RO=21;RPL=7;RPP=18.2106;RPPR=48.6112;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:10,1:10:385:1:41:-0.783237,0,-31.6932 0/1:14:10,4:10:399:4:162:-10.7525,0,-32.0549 1/1:1:0,1:0:0:1:41:-4.09457,-0.30103,0 0/1:2:1,1:1:41:1:35:-2.89657,0,-3.49251 dDocent_Contig_16371 8 . C A 807.599 . AB=0.5;ABP=3.0103;AC=4;AF=0.5;AN=8;AO=31;CIGAR=1X;DP=62;DPB=62;DPRA=0;EPP=70.3259;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1171;QR=1184;RO=31;RPL=0;RPP=70.3259;RPPR=70.3259;RPR=31;RUN=1;SAF=31;SAP=70.3259;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:7,7:7:270:7:255:-19.0843,0,-20.4511 0/1:13:4,9:4:156:9:342:-27.2229,0,-10.5039 0/1:18:12,6:12:450:6:234:-16.0126,0,-35.425 0/1:17:8,9:8:308:9:340:-25.8381,0,-22.9643 dDocent_Contig_16376 11 . G A 225.587 . AB=0.529412;ABP=3.13803;AC=1;AF=0.25;AN=4;AO=9;CIGAR=1X;DP=41;DPB=41;DPRA=0.708333;EPP=22.5536;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=326;QR=1287;RO=32;RPL=0;RPP=22.5536;RPPR=72.4974;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:24:24,0:24:968:0:0:0,-7.22472,-87.4204 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 0/1:17:8,9:8:319:9:326:-24.5587,0,-23.9584 dDocent_Contig_16377 65 . A G 663.306 . AB=0.306122;ABP=35.0063;AC=4;AF=0.5;AN=8;AO=30;CIGAR=1X;DP=98;DPB=98;DPRA=0;EPP=68.1545;EPPR=150.67;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1131;QR=2617;RO=68;RPL=30;RPP=68.1545;RPPR=150.67;RPR=0;RUN=1;SAF=30;SAP=68.1545;SAR=0;SRF=68;SRP=150.67;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:22,3:22:841:3:117:-3.38463,0,-68.4863 0/1:41:25,16:25:977:16:610:-42.8925,0,-75.8965 0/1:25:17,8:17:650:8:287:-18.6438,0,-51.3052 0/1:7:4,3:4:149:3:117:-8.80317,0,-11.665 dDocent_Contig_16378 23 . T C 68.953 . AB=0.375;ABP=4.09604;AC=1;AF=0.25;AN=4;AO=3;CIGAR=1X;DP=18;DPB=18;DPRA=0.8;EPP=9.52472;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=118;QR=605;RO=15;RPL=0;RPP=9.52472;RPPR=35.5824;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=15;SRP=35.5824;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:8:5,3:5:205:3:118:-8.59427,0,-16.4268 0/0:10:10,0:10:400:0:0:0,-3.0103,-36.3559 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_16379 49 . T C 406.89 . AB=0.230769;ABP=19.3799;AC=4;AF=0.5;AN=8;AO=14;CIGAR=1X;DP=37;DPB=37;DPRA=3.77778;EPP=33.4109;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=564;QR=921;RO=23;RPL=0;RPP=33.4109;RPPR=52.9542;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:8:0,8:0:0:8:320:-29.1668,-2.40824,0 0/1:11:9,2:9:354:2:82:-4.46835,0,-28.9093 0/1:15:11,4:11:445:4:162:-10.4513,0,-35.8903 0/0:3:3,0:3:122:0:0:0,-0.90309,-11.3725 dDocent_Contig_16381 44 . G A 629.85 . AB=0.333333;ABP=23.2774;AC=3;AF=0.375;AN=8;AO=29;CIGAR=1X;DP=138;DPB=138;DPRA=0;EPP=57.5966;EPPR=239.701;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.990826;PAO=0;PQA=0;PQR=0;PRO=0;QA=1067;QR=4267;RO=109;RPL=1;RPP=57.5966;RPPR=239.701;RPR=28;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=109;SRP=239.701;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:54:53,1:53:2058:1:38:0,-12.4584,-181.613 0/1:28:24,4:24:951:4:164:-6.72106,0,-77.4639 0/1:39:20,19:20:797:19:669:-48.7655,0,-60.3092 0/1:17:12,5:12:461:5:196:-12.8964,0,-36.7103 dDocent_Contig_16382 161 . C G 303.545 . AB=0.3;ABP=16.9077;AC=5;AF=0.625;AN=8;AO=13;CIGAR=1X;DP=41;DPB=41;DPRA=0;EPP=31.2394;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=514;QR=1016;RO=28;RPL=13;RPP=31.2394;RPPR=63.8115;RPR=0;RUN=1;SAF=0;SAP=31.2394;SAR=13;SRF=0;SRP=63.8115;SRR=28;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:11,6:11:401:6:242:-17.0389,0,-31.308 1/1:1:0,1:0:0:1:41:-4.09457,-0.30103,0 0/1:16:13,3:13:466:3:114:-5.81533,0,-37.4414 0/1:7:4,3:4:149:3:117:-8.803,0,-11.661 dDocent_Contig_16383 11 . G A 513.55 . AB=0.514286;ABP=3.07234;AC=3;AF=0.375;AN=8;AO=20;CIGAR=2X;DP=65;DPB=65;DPRA=0;EPP=46.4397;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=51.2;MQMR=55.1111;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=806;QR=1753;RO=45;RPL=0;RPP=46.4397;RPPR=100.727;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:30:28,2:28:1094:2:81:0,-1.38132,-89.6188 0|1:11:10,1:10:386:1:40:-0.667434,0,-30.9576 0|1:19:6,13:6:238:13:522:-41.1678,0,-15.291 0|1:5:1,4:1:35:4:163:-13.479,0,-1.99348 dDocent_Contig_16384 15 . A C 1213.12 . AB=0.141975;ABP=183.377;AC=3;AF=0.375;AN=8;AO=24;CIGAR=2X;DP=198;DPB=198;DPRA=0;EPP=55.1256;EPPR=267.93;GTI=0;LEN=1;MEANALT=3.25;MQM=58.0417;MQMR=59.4344;NS=4;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=0.311475;PAO=0;PQA=0;PQR=0;PRO=0;QA=960;QR=4837;RO=122;RPL=0;RPP=55.1256;RPPR=267.93;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=122;SRP=267.93;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:64:18,33,9,4:18:725:33,9,4:1314,361,157:-102.778,0,-49.8284,-79.2294,-30.7971,-136.278,-95.2849,-46.8515,-126.076,-153.839 0|1:36:24,2,8,2:24:931:2,8,2:82,316,81:-18.6395,-19.0937,-94.8212,0,-69.5486,-73.91,-19.1837,-88.7432,-69.6379,-94.9105 0|1:62:49,5,6,0:49:1962:5,6,0:201,243,0:-5.29238,-3.47644,-163.518,0,-144.985,-159.743,-20.0428,-165.023,-161.549,-181.587 0|0:36:31,2,1,1:31:1219:2,1,1:78,40,37:0,-2.92084,-102.576,-6.03436,-99.8831,-105.993,-6.30988,-100.152,-103.268,-106.262 dDocent_Contig_16385 7 . A T 30.8572 . AB=0.125;ABP=42.0968;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=268;DPB=268;DPRA=0.40678;EPP=11.6962;EPPR=106.188;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=57.0152;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.234848;PAO=0;PQA=0;PQR=0;PRO=0;QA=156;QR=9739;RO=264;RPL=0;RPP=11.6962;RPPR=576.279;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=188;SRP=106.188;SRR=76;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:83:83,0:83:3072:0:0:0,-24.9855,-276.193 0/0:57:57,0:57:2131:0:0:0,-17.1587,-191.496 0/0:96:96,0:96:3501:0:0:0,-28.8989,-300.936 0/1:32:28,4:28:1035:4:156:-4.78433,0,-83.7893 dDocent_Contig_16386 107 . N T 534.856 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=17;CIGAR=1X;DP=17;DPB=17;DPRA=0;EPP=39.9253;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=42.5882;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=590;QR=0;RO=0;RPL=0;RPP=39.9253;RPPR=0;RPR=17;RUN=1;SAF=0;SAP=39.9253;SAR=17;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:4:0,4:0:0:4:137:-11.8766,-1.20412,0 1/1:9:0,9:0:0:9:313:-28.1208,-2.70927,0 1/1:3:0,3:0:0:3:105:-9.48258,-0.90309,0 1/1:1:0,1:0:0:1:35:-3.4027,-0.30103,0 dDocent_Contig_16387 12 . A G 35.6168 . AB=0.2;ABP=14.7363;AC=1;AF=0.125;AN=8;AO=3;CIGAR=2X;DP=74;DPB=74;DPRA=0.762712;EPP=9.52472;EPPR=157.185;GTI=0;LEN=1;MEANALT=1;MQM=52;MQMR=57.6901;NS=4;NUMALT=1;ODDS=8.67362e-19;PAIRED=0;PAIREDR=0.873239;PAO=0;PQA=0;PQR=0;PRO=0;QA=105;QR=2789;RO=71;RPL=0;RPP=9.52472;RPPR=157.185;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=71;SRP=157.185;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:28:28,0:28:1090:0:0:0,-8.42884,-95.2657 0|0:19:19,0:19:747:0:0:0,-5.71957,-65.973 0|0:12:12,0:12:473:0:0:0,-3.61236,-42.9199 0|1:15:12,3:12:479:3:105:-5.26053,0,-38.9465 dDocent_Contig_16388 17 . T C 663.494 . AB=0.396825;ABP=8.83536;AC=3;AF=0.375;AN=8;AO=25;CIGAR=1X;DP=80;DPB=80;DPRA=1.23529;EPP=57.2971;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=58.08;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.84;PAIREDR=0.963636;PAO=0;PQA=0;PQR=0;PRO=0;QA=998;QR=2172;RO=55;RPL=0;RPP=57.2971;RPPR=122.441;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:17:17,0:17:657:0:0:0,-5.11751,-59.4502 0/1:23:15,8:15:595:8:324:-22.5027,0,-46.9622 0/1:26:13,13:13:513:13:513:-38.5841,0,-38.6883 0/1:14:10,4:10:407:4:161:-10.6605,0,-32.7762 dDocent_Contig_16389 106 . N A 70.2696 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=2X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=74;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. 1|1:2:0,2:0:0:2:74:-7.02588,-0.60206,0 .:.:.:.:.:.:.:. dDocent_Contig_16391 21 . G C 38.083 . AB=0.230769;ABP=11.1951;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=125;DPB=125;DPRA=0.348214;EPP=9.52472;EPPR=267.93;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=101;QR=4871;RO=122;RPL=0;RPP=9.52472;RPPR=267.93;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=122;SRP=267.93;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:68:68,0:68:2712:0:0:0,-20.47,-244.197 0/0:36:36,0:36:1444:0:0:0,-10.8371,-130.209 0/0:8:8,0:8:322:0:0:0,-2.40824,-29.3489 0/1:13:10,3:10:393:3:101:-5.5072,0,-31.812 dDocent_Contig_16393 13 . C T 100.555 . AB=0.152174;ABP=51.3492;AC=2;AF=0.25;AN=8;AO=7;CIGAR=1X;DP=76;DPB=76;DPRA=1.53333;EPP=18.2106;EPPR=152.842;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=285;QR=2774;RO=69;RPL=0;RPP=18.2106;RPPR=152.842;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=69;SRP=152.842;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:35:32,3:32:1281:3:122:-0.836443,0,-105.017 0/0:24:24,0:24:973:0:0:0,-7.22472,-87.8662 0/0:6:6,0:6:237:0:0:0,-1.80618,-21.702 0/1:11:7,4:7:283:4:163:-11.7471,0,-22.5317 dDocent_Contig_16394 84 . A G 431 . AB=0.615385;ABP=6.01695;AC=2;AF=0.25;AN=8;AO=16;CIGAR=1X;DP=72;DPB=72;DPRA=0.565217;EPP=37.7539;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=596;QR=2147;RO=56;RPL=16;RPP=37.7539;RPPR=124.613;RPR=0;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:31:31,0:31:1183:0:0:0,-9.33193,-106.768 0/0:15:15,0:15:578:0:0:0,-4.51545,-52.3627 0/1:16:4,12:4:154:12:458:-36.7522,0,-9.41698 0/1:10:6,4:6:232:4:138:-9.74575,0,-18.2386 dDocent_Contig_16395 17 . G T 52.1562 . AB=0.25;ABP=9.52472;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=25;DPB=25;DPRA=1.84615;EPP=9.52472;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=0.727273;PAO=0;PQA=0;PQR=0;PRO=0;QA=111;QR=864;RO=22;RPL=0;RPP=9.52472;RPPR=50.7827;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 0/1:12:9,3:9:362:3:111:-6.73813,0,-29.332 0/0:11:11,0:11:421:0:0:0,-3.31133,-38.2298 0/0:2:2,0:2:81:0:0:0,-0.60206,-7.68573 dDocent_Contig_16396 30 . C A 106.595 . AB=0.272727;ABP=7.94546;AC=3;AF=0.375;AN=8;AO=4;CIGAR=1X;DP=25;DPB=25;DPRA=0.923077;EPP=11.6962;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=162;QR=852;RO=21;RPL=0;RPP=11.6962;RPPR=48.6112;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1:0,1:0:0:1:40:-3.99568,-0.30103,0 0/0:6:6,0:6:243:0:0:0,-1.80618,-22.2476 0/1:11:8,3:8:325:3:122:-8.06116,0,-26.3081 0/0:7:7,0:7:284:0:0:0,-2.10721,-25.934 dDocent_Contig_16397 15 . T A 156.083 . AB=0.25;ABP=20.3821;AC=2;AF=0.25;AN=8;AO=8;CIGAR=1X;DP=45;DPB=45;DPRA=2.46154;EPP=20.3821;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.75;PAIREDR=0.837838;PAO=0;PQA=0;PQR=0;PRO=0;QA=310;QR=1493;RO=37;RPL=0;RPP=20.3821;RPPR=83.3548;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:10,2:10:408:2:74:-3.4125,0,-33.4682 0/1:20:14,6:14:564:6:236:-15.5893,0,-45.0815 0/0:11:11,0:11:443:0:0:0,-3.31133,-40.2259 0/0:2:2,0:2:78:0:0:0,-0.60206,-7.4033 dDocent_Contig_16398 22 . G A 93.9183 . AB=0.208333;ABP=20.744;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=56;DPB=56;DPRA=6;EPP=16.0391;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=237;QR=1952;RO=50;RPL=0;RPP=16.0391;RPPR=111.584;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:19,5:19:728:5:196:-10.7892,0,-58.6097 0/0:24:23,1:23:903:1:41:0,-3.13015,-77.4834 0/0:7:7,0:7:281:0:0:0,-2.10721,-25.6611 0/0:1:1,0:1:40:0:0:0,-0.30103,-3.99568 dDocent_Contig_16399 131 . G A 100.974 . AB=0;ABP=0;AC=2;AF=0.25;AN=8;AO=3;CIGAR=1X;DP=21;DPB=21;DPRA=0.5;EPP=9.52472;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=105;QR=629;RO=18;RPL=0;RPP=9.52472;RPPR=42.0968;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=42.0968;SRR=18;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:7:7,0:7:244:0:0:0,-2.10721,-22.3001 0/0:6:6,0:6:210:0:0:0,-1.80618,-19.2425 0/0:5:5,0:5:175:0:0:0,-1.50515,-16.0937 1/1:3:0,3:0:0:3:105:-9.79616,-0.90309,0 dDocent_Contig_16400 140 . C A 163.005 . AB=0.428571;ABP=3.63072;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=39;DPB=39;DPRA=1.12;EPP=16.0391;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=244;QR=1274;RO=33;RPL=0;RPP=16.0391;RPPR=74.6689;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=74.6689;SRR=33;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:11,0:11:433:0:0:0,-3.31133,-39.3214 0/1:14:8,6:8:308:6:244:-18.1244,0,-23.8631 0/0:14:14,0:14:533:0:0:0,-4.21442,-48.3038 ./.:.:.:.:.:.:.:. dDocent_Contig_16401 19 . T C 365.598 . AB=0.3;ABP=20.3821;AC=2;AF=0.25;AN=8;AO=15;CIGAR=1X;DP=79;DPB=79;DPRA=1.72414;EPP=35.5824;EPPR=141.985;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=55.1562;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.84375;PAO=0;PQA=0;PQR=0;PRO=0;QA=603;QR=2571;RO=64;RPL=0;RPP=35.5824;RPPR=141.985;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=64;SRP=141.985;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:15,7:15:601:7:281:-19.0393,0,-47.8047 0/1:28:20,8:20:811:8:322:-20.9184,0,-58.3295 0/0:18:18,0:18:710:0:0:0,-5.41854,-62.0088 0/0:11:11,0:11:449:0:0:0,-3.31133,-38.5457 dDocent_Contig_16402 157 . C T 717.294 . AB=0.619048;ABP=8.18047;AC=4;AF=0.5;AN=8;AO=26;CIGAR=1X;DP=42;DPB=42;DPRA=0;EPP=59.4686;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.923077;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=992;QR=575;RO=16;RPL=0;RPP=59.4686;RPPR=37.7539;RPR=26;RUN=1;SAF=0;SAP=59.4686;SAR=26;SRF=0;SRP=37.7539;SRR=16;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:9,7:9:318:7:267:-19.5755,0,-24.1345 0/1:4:1,3:1:38:3:109:-8.96229,0,-2.59315 0/1:9:1,8:1:37:8:311:-25.6447,0,-0.988559 0/1:13:5,8:5:182:8:305:-23.8966,0,-12.8179 dDocent_Contig_16403 22 . C A 456.842 . AB=0.367347;ABP=10.4997;AC=3;AF=0.375;AN=8;AO=19;CIGAR=1X;DP=67;DPB=67;DPRA=0;EPP=44.2683;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.789474;PAIREDR=0.854167;PAO=0;PQA=0;PQR=0;PRO=0;QA=760;QR=1939;RO=48;RPL=0;RPP=44.2683;RPPR=107.241;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:7,2:7:286:2:81:-4.97646,0,-23.4055 0/0:18:17,1:17:692:1:41:0,-1.32397,-58.5137 0/1:23:16,7:16:641:7:274:-18.0986,0,-51.0983 0/1:17:8,9:8:320:9:364:-28.0069,0,-24.05 dDocent_Contig_16404 7 . A G 35.5974 . AB=0.176471;ABP=18.4661;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=50;DPB=50;DPRA=1.54545;EPP=9.52472;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=108;QR=1797;RO=47;RPL=0;RPP=9.52472;RPPR=105.07;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:14,3:14:543:3:108:-4.95742,0,-44.0985 0/0:14:14,0:14:538:0:0:0,-4.21442,-48.7656 0/0:16:16,0:16:599:0:0:0,-4.81648,-54.2407 0/0:3:3,0:3:117:0:0:0,-0.90309,-10.9104 dDocent_Contig_16405 92 . C T 658.405 . AB=0.564103;ABP=4.40227;AC=4;AF=0.666667;AN=6;AO=26;CIGAR=1X;DP=43;DPB=43;DPRA=0;EPP=59.4686;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=890;QR=595;RO=17;RPL=26;RPP=59.4686;RPPR=39.9253;RPR=0;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:10,14:10:350:14:471:-35.486,0,-24.6128 0/1:15:7,8:7:245:8:280:-21.0245,0,-17.8758 1/1:4:0,4:0:0:4:139:-12.8527,-1.20412,0 ./.:.:.:.:.:.:.:. dDocent_Contig_16406 123 . G A 62.4004 . AB=0.25;ABP=11.6962;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=54;DPB=54;DPRA=1.26316;EPP=11.6962;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=138;QR=1763;RO=50;RPL=0;RPP=11.6962;RPPR=111.584;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=111.584;SRR=50;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:25:25,0:25:881:0:0:0,-7.52575,-79.6067 0/0:9:9,0:9:323:0:0:0,-2.70927,-29.4151 0/1:16:12,4:12:429:4:138:-7.93894,0,-34.1332 0/0:4:4,0:4:130:0:0:0,-1.20412,-12.0201 dDocent_Contig_16407 83 . C G 582.227 . AB=0.657143;ABP=10.5174;AC=3;AF=0.375;AN=8;AO=24;CIGAR=1X;DP=41;DPB=41;DPRA=0;EPP=55.1256;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=819;QR=603;RO=17;RPL=24;RPP=55.1256;RPPR=39.9253;RPR=0;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:6,8:6:211:8:287:-21.9621,0,-15.1188 0/1:17:3,14:3:108:14:489:-39.2225,0,-4.95766 0/1:4:3,1:3:104:1:36:-2.39415,0,-8.4989 0/0:6:5,1:5:180:1:7:0,-1.10618,-15.8521 dDocent_Contig_16409 120 . A T 79.7374 . AB=0.222222;ABP=21.1059;AC=2;AF=0.25;AN=8;AO=6;CIGAR=1X;DP=46;DPB=46;DPRA=1.42105;EPP=16.0391;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=0.833333;PAIREDR=0.875;PAO=0;PQA=0;PQR=0;PRO=0;QA=209;QR=1374;RO=40;RPL=0;RPP=16.0391;RPPR=89.8692;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=89.8692;SRR=40;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:7,3:7:241:3:104:-6.69279,0,-19.0161 0/1:17:14,3:14:481:3:105:-4.67865,0,-38.5004 0/0:12:12,0:12:417:0:0:0,-3.61236,-37.8633 0/0:7:7,0:7:235:0:0:0,-2.10721,-21.4783 dDocent_Contig_16410 105 . N G 165.593 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=5;CIGAR=3X;DP=5;DPB=5;DPRA=0;EPP=13.8677;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=173;QR=0;RO=0;RPL=0;RPP=13.8677;RPPR=0;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. 1|1:2:0,2:0:0:2:70:-6.6474,-0.60206,0 1|1:3:0,3:0:0:3:103:-9.61002,-0.90309,0 dDocent_Contig_16412 140 . A G 60.4321 . AB=0.166667;ABP=26.1727;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=57;DPB=57;DPRA=2.18182;EPP=11.6962;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=162;QR=2137;RO=53;RPL=0;RPP=11.6962;RPPR=118.098;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=118.098;SRR=53;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:24:24,0:24:964:0:0:0,-7.22472,-87.0566 0/1:24:20,4:20:805:4:162:-7.74203,0,-65.5406 0/0:6:6,0:6:246:0:0:0,-1.80618,-22.5201 0/0:3:3,0:3:122:0:0:0,-0.90309,-11.3725 dDocent_Contig_16414 13 . A T 192.138 . AB=0.164557;ABP=80.2213;AC=4;AF=0.5;AN=8;AO=13;CIGAR=1X3M;DP=79;DPB=79;DPRA=0;EPP=31.2394;EPPR=128.956;GTI=0;LEN=1;MEANALT=1.75;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.769231;PAIREDR=0.896552;PAO=0;PQA=0;PQR=0;PRO=0;QA=518;QR=2287;RO=58;RPL=0;RPP=31.2394;RPPR=128.956;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:32:27,2,3:27:1070:2,3:81,112:-1.02,-2.45602,-89.939,0,-81.3766,-87.1533 0|1:9:5,1,3:5:189:1,3:41,120:-8.37209,-6.49068,-21.665,0,-12.0731,-14.5594 0|1:33:22,5,6:22:874:5,6:186,245:-13.6125,-5.02996,-75.4667,0,-56.754,-70.1648 0|1:5:4,0,1:4:154:0,1:0,41:-2.58942,-3.79354,-16.4171,0,-13.0281,-12.727 dDocent_Contig_16415 31 . G A 280.717 . AB=0.333333;ABP=12.42;AC=3;AF=0.375;AN=8;AO=15;CIGAR=1X;DP=68;DPB=68;DPRA=0;EPP=35.5824;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.981132;PAO=0;PQA=0;PQR=0;PRO=0;QA=570;QR=2068;RO=53;RPL=0;RPP=35.5824;RPPR=118.098;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:29:27,2:27:1038:2:80:0,-1.13829,-86.1133 0/1:21:18,3:18:715:3:93:-2.3523,0,-58.356 0/1:10:3,7:3:121:7:275:-22.1073,0,-8.2699 0/1:8:5,3:5:194:3:122:-8.96425,0,-15.4215 dDocent_Contig_16417 145 . C T 388.831 . AB=0.327586;ABP=17.986;AC=4;AF=0.5;AN=8;AO=19;CIGAR=1X;DP=58;DPB=58;DPRA=0;EPP=44.2683;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.894737;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=692;QR=1508;RO=39;RPL=0;RPP=44.2683;RPPR=87.6977;RPR=19;RUN=1;SAF=0;SAP=44.2683;SAR=19;SRF=0;SRP=87.6977;SRR=39;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:8,7:8:309:7:252:-18.505,0,-23.6575 0/1:14:12,2:12:468:2:67:-2.14706,0,-38.2581 0/1:17:10,7:10:383:7:264:-19.0021,0,-29.708 0/1:12:9,3:9:348:3:109:-6.55564,0,-28.0677 dDocent_Contig_16418 108 . C T 531.105 . AB=0.40625;ABP=7.89611;AC=4;AF=0.5;AN=8;AO=26;CIGAR=1X;DP=64;DPB=64;DPRA=0;EPP=59.4686;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=872;QR=1252;RO=38;RPL=0;RPP=59.4686;RPPR=85.5263;RPR=26;RUN=1;SAF=0;SAP=59.4686;SAR=26;SRF=0;SRP=85.5263;SRR=38;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:8:3,5:3:98:5:164:-12.6757,0,-6.73594 0/1:20:16,4:16:526:4:134:-6.37073,0,-41.6341 0/1:31:16,15:16:537:15:511:-36.9833,0,-39.3179 0/1:5:3,2:3:91:2:63:-4.47829,0,-6.98602 dDocent_Contig_16420 12 . A T 282.953 . AB=0.818182;ABP=12.6832;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X;DP=93;DPB=93;DPRA=0.402439;EPP=22.5536;EPPR=185.414;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=366;QR=3288;RO=84;RPL=0;RPP=22.5536;RPPR=185.414;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=84;SRP=185.414;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:29:29,0:29:1130:0:0:0,-8.72987,-101.977 0/1:11:2,9:2:81:9:366:-29.9938,0,-4.3744 0/0:27:27,0:27:1054:0:0:0,-8.12781,-95.1476 0/0:26:26,0:26:1023:0:0:0,-7.82678,-92.3631 dDocent_Contig_16421 45 . G A 645.914 . AB=0.875;ABP=22.5536;AC=5;AF=0.625;AN=8;AO=14;CIGAR=1X13M;DP=69;DPB=69.2143;DPRA=0;EPP=33.4109;EPPR=96.3836;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=562;QR=1700;RO=43;RPL=14;RPP=33.4109;RPPR=96.3836;RPR=0;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:16:0,0,2,14:0:0:0,2,14:0,60,562:-50.9476,-50.9476,-50.9476,-46.7075,-46.7075,-46.1055,-4.5264,-4.5264,0,-0.311976 0|1:36:33,3,0,0:33:1305:3,0,0:121,0,0:-0.443117,0,-106.887,-10.3771,-107.79,-117.765,-10.3771,-107.79,-117.765,-117.765 0|1:6:2,3,1,0:2:79:3,1,0:121,30,0:-9.47189,0,-5.681,-7.97895,-4.49741,-14.1756,-10.074,-6.58409,-14.4766,-16.5832 0|1:11:8,3,0,0:8:316:3,0,0:120,0,0:-7.87657,0,-25.4947,-10.2848,-26.3978,-36.2844,-10.2848,-26.3978,-36.2844,-36.2844 dDocent_Contig_16422 123 . G T 203.906 . AB=0.529412;ABP=3.13803;AC=2;AF=0.25;AN=8;AO=9;CIGAR=1X;DP=34;DPB=34;DPRA=1;EPP=22.5536;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=0.96;PAO=0;PQA=0;PQR=0;PRO=0;QA=313;QR=850;RO=25;RPL=0;RPP=22.5536;RPPR=57.2971;RPR=9;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=57.2971;SRR=25;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:4:1,3:1:35:3:104:-8.49897,0,-2.29451 0/0:13:13,0:13:447:0:0:0,-3.91339,-40.5594 0/1:13:7,6:7:228:6:209:-15.2377,0,-16.9256 0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9449 dDocent_Contig_16424 1 . N G 985.017 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=29;CIGAR=1X;DP=29;DPB=29;DPRA=0;EPP=49.8093;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=56.6897;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=0.0344828;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1087;QR=0;RO=0;RPL=0;RPP=65.983;RPPR=0;RPR=29;RUN=1;SAF=27;SAP=49.8093;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:4:0,4:0:0:4:155:-14.3039,-1.20412,0 1/1:3:0,3:0:0:3:114:-10.6007,-0.90309,0 1/1:21:0,21:0:0:21:783:-70.7201,-6.32163,0 1/1:1:0,1:0:0:1:35:-2.27356,-0.30103,0 dDocent_Contig_16425 113 . G A 73.8105 . AB=0.363636;ABP=4.78696;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=31;DPB=31;DPRA=1.65;EPP=11.6962;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=134;QR=930;RO=27;RPL=0;RPP=11.6962;RPPR=61.6401;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=61.6401;SRR=27;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:12:12,0:12:414:0:0:0,-3.61236,-37.5914 0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9449 0/0:4:4,0:4:138:0:0:0,-1.20412,-12.7604 0/1:11:7,4:7:238:4:134:-9.07988,0,-18.4412 dDocent_Contig_16426 133 . C T 221.131 . AB=0.529412;ABP=3.13803;AC=2;AF=0.25;AN=8;AO=9;CIGAR=1X;DP=81;DPB=81;DPRA=0.265625;EPP=22.5536;EPPR=159.356;GTI=0;LEN=1;MEANALT=1;MQM=58.6667;MQMR=58.2361;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=333;QR=2734;RO=72;RPL=0;RPP=22.5536;RPPR=159.356;RPR=9;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=159.356;SRR=72;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:2,7:2:79:7:273:-22.2188,0,-4.78797 0/0:22:22,0:22:840:0:0:0,-6.62266,-75.9103 0/0:42:42,0:42:1579:0:0:0,-12.6433,-139.858 0/1:8:6,2:6:236:2:60:-3.2865,0,-19.1955 dDocent_Contig_16427 29 . G T 103.559 . AB=0.333333;ABP=4.45795;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X2M11I2M;DP=49;DPB=71;DPRA=0.5;EPP=7.35324;EPPR=81.1833;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=79;QR=1429;RO=36;RPL=0;RPP=7.35324;RPPR=81.1833;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:31:23,0,5,2:23:915:0,5,2:0,163,79:-6.20653,-13.1302,-88.5094,0,-75.3628,-73.8577,-6.61219,-82.008,-68.8622,-81.406 0|0:12:12,0,0,0:12:474:0,0,0:0,0,0:0,-3.61236,-43.0099,-3.61236,-43.0099,-43.0099,-3.61236,-43.0099,-43.0099,-43.0099 1|0:6:1,2,2,1:1:40:2,2,1:79,59,7:-7.66529,-1.39548,-4.13341,-3.2575,0,-5.97881,-7.6923,-4.47145,-6.33348,-10.6973 .:.:.:.:.:.:.:. dDocent_Contig_16428 109 . T A 68.2677 . AB=0;ABP=0;AC=2;AF=0.333333;AN=6;AO=2;CIGAR=1X;DP=18;DPB=18;DPRA=0.25;EPP=7.35324;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=40;MQMR=40;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=69;QR=547;RO=16;RPL=0;RPP=7.35324;RPPR=37.7539;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=37.7539;SRR=16;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:69:-6.34924,-0.60206,0 0/0:11:11,0:11:383:0:0:0,-3.31133,-33.6652 0/0:5:5,0:5:164:0:0:0,-1.50515,-14.7029 dDocent_Contig_16429 17 . G T 65.052 . AB=0.172414;ABP=30.0414;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=83;DPB=83;DPRA=1.61111;EPP=13.8677;EPPR=172.385;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=181;QR=3106;RO=78;RPL=0;RPP=13.8677;RPPR=172.385;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=78;SRP=172.385;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:24,5:24:936:5:181:-7.90314,0,-75.8075 0/0:9:9,0:9:357:0:0:0,-2.70927,-32.492 0/0:33:33,0:33:1332:0:0:0,-9.93399,-120.14 0/0:12:12,0:12:481:0:0:0,-3.61236,-43.6414 dDocent_Contig_16431 35 . A T 1403.06 . AB=0.634146;ABP=9.41879;AC=6;AF=0.75;AN=8;AO=43;CIGAR=1X;DP=58;DPB=58;DPRA=0;EPP=96.3836;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.866667;PAO=0;PQA=0;PQR=0;PRO=0;QA=1718;QR=601;RO=15;RPL=0;RPP=96.3836;RPPR=35.5824;RPR=43;RUN=1;SAF=43;SAP=96.3836;SAR=0;SRF=15;SRP=35.5824;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:10:0,10:0:0:10:399:-36.2677,-3.0103,0 0/1:27:8,19:8:320:19:756:-60.2362,0,-21.0395 1/1:7:0,7:0:0:7:279:-25.4808,-2.10721,0 0/1:14:7,7:7:281:7:284:-21.7196,0,-21.4481 dDocent_Contig_16434 59 . G A 91.2365 . AB=0.333333;ABP=10.9724;AC=3;AF=0.5;AN=6;AO=11;CIGAR=1X;DP=33;DPB=33;DPRA=0;EPP=26.8965;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=28.3636;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=307;QR=733;RO=22;RPL=0;RPP=26.8965;RPPR=50.7827;RPR=11;RUN=1;SAF=0;SAP=26.8965;SAR=11;SRF=0;SRP=50.7827;SRR=22;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:8:4,4:4:123:4:106:-5.69649,0,-8.96543 0/1:10:6,4:6:209:4:118:-6.08981,0,-16.1408 0/1:15:12,3:12:401:3:83:-2.83973,0,-31.8964 ./.:.:.:.:.:.:.:. dDocent_Contig_16435 18 . A G 80.7627 . AB=0.2;ABP=26.4622;AC=2;AF=0.25;AN=8;AO=6;CIGAR=1X;DP=39;DPB=39;DPRA=3.33333;EPP=16.0391;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=0.515152;PAO=0;PQA=0;PQR=0;PRO=0;QA=220;QR=1278;RO=33;RPL=0;RPP=16.0391;RPPR=74.6689;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:16,4:16:625:4:162:-8.94615,0,-50.5615 0/0:5:5,0:5:198:0:0:0,-1.50515,-18.1974 0/1:10:8,2:8:312:2:58:-2.49452,0,-25.4342 0/0:4:4,0:4:143:0:0:0,-1.20412,-13.2175 dDocent_Contig_16436 11 . C T 55.9765 . AB=0.189189;ABP=34.0565;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=57;DPB=57;DPRA=0.925;EPP=18.2106;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=32;MQMR=49.24;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.54;PAO=0;PQA=0;PQR=0;PRO=0;QA=273;QR=2005;RO=50;RPL=0;RPP=18.2106;RPPR=111.584;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:33:27,6:27:1083:6:232:-6.90509,0,-79.848 0/1:4:3,1:3:117:1:41:-2.1169,0,-8.22321 0/0:20:20,0:20:805:0:0:0,-6.0206,-69.9353 ./.:.:.:.:.:.:.:. dDocent_Contig_16437 71 . T G 335.311 . AB=0.518519;ABP=3.09072;AC=2;AF=0.25;AN=8;AO=15;CIGAR=1X;DP=41;DPB=41;DPRA=6.5;EPP=35.5824;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=529;QR=902;RO=26;RPL=15;RPP=35.5824;RPPR=59.4686;RPR=0;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:11,8:11:375:8:282:-20.0021,0,-28.3584 0/0:12:11,1:11:386:1:36:0,-0.0140849,-31.4781 0/1:8:2,6:2:72:6:211:-16.9252,0,-4.42848 0/0:2:2,0:2:69:0:0:0,-0.60206,-6.55266 dDocent_Contig_16438 118 . G A 56.5513 . AB=0.176471;ABP=33.9218;AC=3;AF=0.375;AN=8;AO=6;CIGAR=1X;DP=47;DPB=47;DPRA=0.871795;EPP=16.0391;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.833333;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=204;QR=1454;RO=41;RPL=0;RPP=16.0391;RPPR=92.0407;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=92.0407;SRR=41;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:17,2:17:592:2:62:-0.168628,0,-47.8847 0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085 0/1:10:7,3:7:252:3:106:-6.8788,0,-20.0187 0/0:13:13,0:13:466:0:0:0,-3.91339,-42.2787 dDocent_Contig_16439 45 . C A 41.8201 . AB=0.214286;ABP=12.937;AC=2;AF=0.25;AN=8;AO=3;CIGAR=1X;DP=29;DPB=29;DPRA=0.933333;EPP=9.52472;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.333333;PAIREDR=0.923077;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=1023;RO=26;RPL=0;RPP=9.52472;RPPR=59.4686;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:8,2:8:319:2:81:-4.67543,0,-26.0675 0/0:11:11,0:11:434:0:0:0,-3.31133,-39.4139 0/1:4:3,1:3:123:1:41:-2.89045,0,-10.2607 0/0:4:4,0:4:147:0:0:0,-1.20412,-13.5847 dDocent_Contig_16440 88 . T C 53.1511 . AB=0.266667;ABP=10.1038;AC=2;AF=0.25;AN=8;AO=4;CIGAR=1X;DP=26;DPB=26;DPRA=1.36364;EPP=11.6962;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.25;PAIREDR=0.818182;PAO=0;PQA=0;PQR=0;PRO=0;QA=139;QR=737;RO=22;RPL=4;RPP=11.6962;RPPR=50.7827;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:2:1,1:1:35:1:35:-2.89657,0,-2.89657 0/1:13:10,3:10:319:3:104:-5.7897,0,-25.1053 0/0:5:5,0:5:175:0:0:0,-1.50515,-16.0937 0/0:6:6,0:6:208:0:0:0,-1.80618,-19.0596 dDocent_Contig_16444 9 . A C 347.325 . AB=0.285714;ABP=25.3454;AC=2;AF=0.25;AN=8;AO=16;CIGAR=1X;DP=131;DPB=131;DPRA=0.746667;EPP=37.7539;EPPR=252.73;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.991304;PAO=0;PQA=0;PQR=0;PRO=0;QA=603;QR=4388;RO=115;RPL=0;RPP=37.7539;RPPR=252.73;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=115;SRP=252.73;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:49:49,0:49:1862:0:0:0,-14.7505,-167.827 0/1:48:36,12:36:1379:12:448:-26.2133,0,-109.944 0/1:8:4,4:4:150:4:155:-11.9172,0,-11.4569 0/0:26:26,0:26:997:0:0:0,-7.82678,-90.0417 dDocent_Contig_16446 12 . G C 104.595 . AB=0.3;ABP=6.48466;AC=3;AF=0.5;AN=6;AO=4;CIGAR=1X2M1X1M1X3M1X;DP=19;DPB=19;DPRA=0.6875;EPP=11.6962;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=158;QR=573;RO=15;RPL=0;RPP=11.6962;RPPR=35.5824;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=15;SRP=35.5824;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:8:8,0:8:316:0:0:0,-2.40824,-28.8067 0|1:10:7,3:7:257:3:119:-8.08509,0,-20.4689 1|1:1:0,1:0:0:1:39:-3.89656,-0.30103,0 .:.:.:.:.:.:.:. dDocent_Contig_16447 60 . T C 802.537 . AB=0.462687;ABP=3.82055;AC=4;AF=0.5;AN=8;AO=31;CIGAR=1X;DP=67;DPB=67;DPRA=0;EPP=70.3259;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.709677;PAIREDR=0.888889;PAO=0;PQA=0;PQR=0;PRO=0;QA=1182;QR=1367;RO=36;RPL=31;RPP=70.3259;RPPR=81.1833;RPR=0;RUN=1;SAF=31;SAP=70.3259;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:13,5:13:492:5:194:-12.4143,0,-39.2061 0/1:19:10,9:10:380:9:346:-25.7794,0,-28.8332 0/1:20:9,11:9:342:11:417:-31.8584,0,-25.1161 0/1:10:4,6:4:153:6:225:-17.5995,0,-11.1311 dDocent_Contig_16448 21 . G C 137.876 . AB=0.35;ABP=6.91895;AC=2;AF=0.25;AN=8;AO=7;CIGAR=1X;DP=64;DPB=64;DPRA=0.454545;EPP=5.80219;EPPR=94.4788;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.142857;PAIREDR=0.368421;PAO=0;PQA=0;PQR=0;PRO=0;QA=231;QR=2249;RO=57;RPL=0;RPP=18.2106;RPPR=126.784;RPR=7;RUN=1;SAF=5;SAP=5.80219;SAR=2;SRF=53;SRP=94.4788;SRR=4;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:24:24,0:24:951:0:0:0,-7.22472,-85.89 0/0:20:20,0:20:787:0:0:0,-6.0206,-71.1421 0/1:7:1,6:1:40:6:190:-15.2969,0,-1.88847 0/1:13:12,1:12:471:1:41:-0.181177,0,-38.8236 dDocent_Contig_16451 63 . A T 86.9357 . AB=0;ABP=0;AC=4;AF=0.5;AN=8;AO=4;CIGAR=1X;DP=32;DPB=32;DPRA=1;EPP=11.6962;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.25;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=142;QR=1123;RO=28;RPL=4;RPP=11.6962;RPPR=63.8115;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:8:8,0:8:313:0:0:0,-2.40824,-28.5293 0/0:22:20,2:20:810:2:61:0,-0.831816,-67.4255 1/1:1:0,1:0:0:1:40:-3.99568,-0.30103,0 1/1:1:0,1:0:0:1:41:-4.09457,-0.30103,0 dDocent_Contig_16453 107 . N G 1099.2 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=36;CIGAR=1X;DP=36;DPB=36;DPRA=0;EPP=81.1833;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=29.5585;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1218;QR=0;RO=0;RPL=0;RPP=81.1833;RPPR=0;RPR=36;RUN=1;SAF=0;SAP=81.1833;SAR=36;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:36:0,36:0:0:36:1218:-109.92,-10.8371,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_16454 26 . A C 73.6174 . AB=0.210526;ABP=16.8392;AC=2;AF=0.25;AN=8;AO=4;CIGAR=1X;DP=50;DPB=50;DPRA=0.612903;EPP=11.6962;EPPR=94.401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.956522;PAO=0;PQA=0;PQR=0;PRO=0;QA=162;QR=1825;RO=46;RPL=0;RPP=11.6962;RPPR=102.898;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=45;SRP=94.401;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:20:20,0:20:791:0:0:0,-6.0206,-71.5004 0/0:11:11,0:11:437:0:0:0,-3.31133,-39.6846 0/1:11:10,1:10:395:1:39:-0.585235,0,-32.594 0/1:8:5,3:5:202:3:123:-9.05655,0,-16.1536 dDocent_Contig_16455 18 . T G 69.0218 . AB=0.210526;ABP=16.8392;AC=2;AF=0.25;AN=8;AO=4;CIGAR=1X;DP=35;DPB=35;DPRA=1.1875;EPP=11.6962;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.5;PAIREDR=0.580645;PAO=0;PQA=0;PQR=0;PRO=0;QA=159;QR=1182;RO=31;RPL=0;RPP=11.6962;RPPR=70.3259;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:10,1:10:368:1:41:-0.783237,0,-30.1517 0/0:13:13,0:13:501:0:0:0,-3.91339,-45.4373 0/1:8:5,3:5:198:3:118:-8.59448,0,-15.7893 0/0:3:3,0:3:115:0:0:0,-0.90309,-10.7249 dDocent_Contig_16457 14 . G C 1064.71 . AB=0.378641;ABP=16.1867;AC=3;AF=0.375;AN=8;AO=41;CIGAR=1X;DP=129;DPB=129;DPRA=0;EPP=92.0407;EPPR=194.1;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.988636;PAO=0;PQA=0;PQR=0;PRO=0;QA=1658;QR=3569;RO=88;RPL=0;RPP=92.0407;RPPR=194.1;RPR=41;RUN=1;SAF=41;SAP=92.0407;SAR=0;SRF=88;SRP=194.1;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:41:20,21:20:810:21:851:-64.5582,0,-60.8706 0/1:42:30,12:30:1221:12:488:-31.6277,0,-97.5144 0/0:26:24,2:24:973:2:82:0,-0.0471021,-80.0876 0/1:20:14,6:14:565:6:237:-15.6825,0,-45.1707 dDocent_Contig_16458 29 . A T 68.736 . AB=0.181818;ABP=22.3561;AC=2;AF=0.25;AN=8;AO=4;CIGAR=1X;DP=65;DPB=65;DPRA=0.511628;EPP=11.6962;EPPR=135.47;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.75;PAIREDR=0.590164;PAO=0;PQA=0;PQR=0;PRO=0;QA=162;QR=2463;RO=61;RPL=0;RPP=11.6962;RPPR=135.47;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=61;SRP=135.47;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:12,1:12:491:1:41:-0.181177,0,-40.6276 0/0:19:19,0:19:772:0:0:0,-5.71957,-69.7999 0/0:24:24,0:24:959:0:0:0,-7.22472,-86.6107 0/1:9:6,3:6:241:3:121:-8.57093,0,-19.3576 dDocent_Contig_16461 30 . C T 187.38 . AB=0.444444;ABP=3.49285;AC=2;AF=0.25;AN=8;AO=9;CIGAR=1X;DP=35;DPB=35;DPRA=3.55556;EPP=22.5536;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.730769;PAO=0;PQA=0;PQR=0;PRO=0;QA=339;QR=1041;RO=26;RPL=0;RPP=22.5536;RPPR=59.4686;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:14:13,1:13:523:1:41:0,-0.119853,-43.3221 0/1:10:5,5:5:200:5:178:-13.3559,0,-15.3696 0/0:3:3,0:3:116:0:0:0,-0.90309,-10.8174 0/1:8:5,3:5:202:3:120:-8.77907,0,-16.1538 dDocent_Contig_16463 12 . G C 32.9408 . AB=0.1875;ABP=16.582;AC=2;AF=0.25;AN=8;AO=3;CIGAR=1X;DP=46;DPB=46;DPRA=0.533333;EPP=9.52472;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=119;QR=1675;RO=43;RPL=0;RPP=9.52472;RPPR=96.3836;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:11,2:11:417:2:78:-3.48991,0,-33.9589 0/0:25:25,0:25:982:0:0:0,-7.52575,-88.6811 0/0:5:5,0:5:194:0:0:0,-1.50515,-17.8313 0/1:3:2,1:2:82:1:41:-3.19148,0,-6.87659 dDocent_Contig_16464 115 . A T 883.823 . AB=0.612903;ABP=13.3073;AC=4;AF=0.5;AN=8;AO=57;CIGAR=1X1M;DP=93;DPB=93;DPRA=0;EPP=126.784;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1.75;MQM=35.2632;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=0.350877;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1451;QR=956;RO=28;RPL=0;RPP=126.784;RPPR=63.8115;RPR=57;RUN=1;SAF=0;SAP=126.784;SAR=57;SRF=0;SRP=63.8115;SRR=28;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:16:6,3,0,7:6:197:3,0,7:104,0,180:-11.1335,-4.45423,-19.5097,-12.9397,-20.4128,-28.8786,0,-7.44605,-15.9056,-13.7984 0|1:19:8,0,4,7:8:277:0,4,7:0,124,169:-9.61339,-12.0216,-34.5858,-5.20723,-27.7849,-26.5808,0,-22.5949,-15.8211,-20.4877 0|1:43:11,1,0,31:11:380:1,0,31:35,0,791:-53.5549,-55.3806,-85.9841,-56.8663,-86.2851,-87.7705,0,-29.536,-31.0107,-21.6787 0|1:15:3,0,0,12:3:102:0,0,12:0,0,311:-21.4783,-22.3814,-30.6755,-22.3814,-30.6755,-30.6755,0,-8.61371,-8.61371,-5.00135 dDocent_Contig_16465 15 . G A 944.068 . AB=0.162162;ABP=39.6906;AC=0;AF=0;AN=8;AO=6;CIGAR=1X1M3X3M2X3M2X;DP=145;DPB=145;DPRA=0;EPP=16.0391;EPPR=74.6689;GTI=0;LEN=1;MEANALT=5;MQM=21;MQMR=60;NS=4;NUMALT=6;ODDS=0;PAIRED=0;PAIREDR=0.727273;PAO=0;PQA=0;PQR=0;PRO=0;QA=233;QR=1301;RO=33;RPL=0;RPP=16.0391;RPPR=74.6689;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:37:4,6,6,5,0,11,5:4:160:6,6,5,0,11,5:233,229,192,0,437,201:-38.1632,-29.8994,-41.2796,-29.9991,-33.7274,-41.3793,-23.7902,-27.5141,-27.6139,-35.4757,-39.3673,-43.0858,-43.1855,-36.9809,-52.5555,-3.38914,-7.12179,-7.22166,-1.00148,-16.5861,-13.2748,-22.79,-26.5137,-26.6134,-20.4032,-35.9812,0,-34.476 0|0:36:4,0,17,2,7,2,2:4:158:0,17,2,7,2,2:0,675,80,272,82,82:-33.8067,-35.0108,-48.0242,-8.17848,-21.1832,-16.0657,-28.6722,-41.6871,-14.8508,-41.085,-13.7972,-26.8165,0,-20.4769,-24.7093,-28.2346,-41.2497,-14.412,-34.9118,-20.0391,-40.6476,-28.2346,-41.2497,-14.412,-34.9118,-20.0391,-34.4744,-40.6476 0|0:46:12,0,16,4,0,7,6:12:466:0,16,4,0,7,6:0,629,158,0,282,239:-21.1822,-24.7946,-63.1041,0,-38.2842,-33.4677,-11.7815,-50.0963,-25.2827,-48.8922,-24.7946,-63.1041,-38.2842,-50.0963,-63.1041,-1.54539,-39.8661,-15.0571,-26.8556,-39.8661,-37.7589,-5.09703,-43.4154,-18.605,-30.4054,-43.4154,-20.1728,-41.6092 0|0:26:13,0,8,0,0,2,2:13:517:0,8,0,0,2,2:0,316,0,0,80,79:-8.63895,-12.5523,-55.1787,0,-42.5695,-40.1612,-12.5523,-55.1787,-42.5695,-55.1787,-12.5523,-55.1787,-42.5695,-55.1787,-55.1787,-5.94083,-48.5837,-35.9792,-48.5837,-48.5837,-47.9817,-6.03109,-48.6735,-36.0691,-48.6735,-48.6735,-42.0776,-48.0714 dDocent_Contig_16467 204 . C A 64.1852 . AB=0.107143;ABP=78.0812;AC=4;AF=0.5;AN=8;AO=8;CIGAR=1X;DP=68;DPB=68;DPRA=2.18519;EPP=20.3821;EPPR=128.956;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=59.1207;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.982759;PAO=0;PQA=0;PQR=0;PRO=0;QA=284;QR=2111;RO=58;RPL=8;RPP=20.3821;RPPR=128.956;RPR=0;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=128.956;SRR=58;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:1,2:1:37:2:68:-5.55848,-0.00369123,0 0/1:49:42,5:42:1531:5:181:-2.16652,0,-123.613 0/1:7:6,1:6:216:1:35:-1.39142,0,-17.6831 0/0:9:9,0:9:327:0:0:0,-2.70927,-29.7777 dDocent_Contig_16468 82 . A G 338.1 . AB=0.273973;ABP=35.4039;AC=4;AF=0.5;AN=8;AO=20;CIGAR=1X;DP=73;DPB=73;DPRA=0;EPP=46.4397;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.962264;PAO=0;PQA=0;PQR=0;PRO=0;QA=687;QR=1746;RO=53;RPL=20;RPP=46.4397;RPPR=118.098;RPR=0;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:20,4:20:667:4:140:-5.72021,0,-53.1176 0/1:33:26,7:26:844:7:239:-11.9099,0,-66.3268 0/1:8:4,4:4:130:4:136:-10.1676,0,-9.6134 0/1:8:3,5:3:105:5:172:-13.4102,0,-7.38792 dDocent_Contig_16469 168 . A T 110.618 . AB=0.8;ABP=6.91895;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=45;DPB=45;DPRA=0.375;EPP=11.6962;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.560976;PAO=0;PQA=0;PQR=0;PRO=0;QA=154;QR=1646;RO=41;RPL=4;RPP=11.6962;RPPR=92.0407;RPR=0;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=92.0407;SRR=41;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:24:24,0:24:957:0:0:0,-7.22472,-86.4333 0/0:11:11,0:11:446:0:0:0,-3.31133,-40.4962 0/0:5:5,0:5:203:0:0:0,-1.50515,-18.6531 0/1:5:1,4:1:40:4:154:-12.727,0,-2.49053 dDocent_Contig_16470 109 . C G 70.598 . AB=0.75;ABP=5.18177;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=50;DPB=50;DPRA=0.26087;EPP=9.52472;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=4.33681e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=103;QR=1591;RO=47;RPL=0;RPP=9.52472;RPPR=105.07;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=105.07;SRR=47;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:4:1,3:1:35:3:103:-8.40585,0,-2.29451 0/0:6:6,0:6:208:0:0:0,-1.80618,-19.0596 0/0:20:20,0:20:668:0:0:0,-6.0206,-60.4351 0/0:20:20,0:20:680:0:0:0,-6.0206,-61.5189 dDocent_Contig_16471 68 . C G 45.9444 . AB=0.5;ABP=3.0103;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X;DP=60;DPB=60;DPRA=0.214286;EPP=7.35324;EPPR=128.956;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=4.33681e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=79;QR=2344;RO=58;RPL=2;RPP=7.35324;RPPR=128.956;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:31:31,0:31:1250:0:0:0,-9.33193,-112.77 0/0:23:23,0:23:933:0:0:0,-6.92369,-84.2725 0/1:4:2,2:2:82:2:79:-6.29312,0,-6.57556 0/0:2:2,0:2:79:0:0:0,-0.60206,-7.49724 dDocent_Contig_16472 46 . G A 1214.86 . AB=0.494505;ABP=3.03416;AC=4;AF=0.5;AN=8;AO=45;CIGAR=1X;DP=91;DPB=91;DPRA=0;EPP=84.1269;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=56;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.822222;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1819;QR=1824;RO=46;RPL=4;RPP=69.0713;RPPR=102.898;RPR=41;RUN=1;SAF=43;SAP=84.1269;SAR=2;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:18,7:18:702:7:281:-13.2932,0,-55.9814 0/1:15:8,7:8:310:7:283:-21.3276,0,-23.7459 0/1:37:16,21:16:650:21:858:-66.3903,0,-47.6946 0/1:14:4,10:4:162:10:397:-27.873,0,-10.7525 dDocent_Contig_16473 14 . C A 327.871 . AB=0.311111;ABP=16.956;AC=3;AF=0.375;AN=8;AO=15;CIGAR=1X;DP=69;DPB=69;DPRA=0;EPP=35.5824;EPPR=120.27;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=603;QR=2177;RO=54;RPL=0;RPP=35.5824;RPPR=120.27;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:24:23,1:23:917:1:41:0,-3.13015,-78.7384 0/1:29:22,7:22:897:7:284:-17.2035,0,-72.3046 0/1:12:8,4:8:323:4:163:-11.4461,0,-25.8264 0/1:4:1,3:1:40:3:115:-9.51826,0,-2.79156 dDocent_Contig_16474 11 . A C 414.675 . AB=0.444444;ABP=3.9754;AC=2;AF=0.25;AN=8;AO=16;CIGAR=1X;DP=65;DPB=65;DPRA=1.24138;EPP=37.7539;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=611;QR=1966;RO=49;RPL=0;RPP=37.7539;RPPR=109.412;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:13:13,0:13:513:0:0:0,-3.91339,-46.5137 0/0:16:16,0:16:650:0:0:0,-4.81648,-58.8335 0/1:25:11,14:11:447:14:535:-40.9612,0,-33.0598 0/1:11:9,2:9:356:2:76:-3.90293,0,-29.0878 dDocent_Contig_16476 97 . C T 952.763 . AB=0.421569;ABP=8.46027;AC=3;AF=0.375;AN=8;AO=43;CIGAR=1X;DP=117;DPB=117;DPRA=2.26667;EPP=96.3836;EPPR=163.699;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.906977;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1449;QR=2549;RO=74;RPL=43;RPP=96.3836;RPPR=163.699;RPR=0;RUN=1;SAF=43;SAP=96.3836;SAR=0;SRF=74;SRP=163.699;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:46:24,22:24:833:22:752:-54.151,0,-61.4417 0/0:15:15,0:15:518:0:0:0,-4.51545,-46.9482 0/1:38:22,16:22:761:16:524:-36.0315,0,-57.3718 0/1:18:13,5:13:437:5:173:-10.4917,0,-34.2334 dDocent_Contig_16477 129 . T G 112.094 . AB=0.352941;ABP=6.20364;AC=1;AF=0.25;AN=4;AO=6;CIGAR=1X;DP=26;DPB=26;DPRA=1.88889;EPP=16.0391;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=200;QR=677;RO=20;RPL=0;RPP=16.0391;RPPR=46.4397;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=46.4397;SRR=20;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:9:9,0:9:304:0:0:0,-2.70927,-27.6885 0/1:17:11,6:11:373:6:200:-13.2094,0,-28.779 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_16478 22 . G A 30.7167 . AB=0.181818;ABP=12.6832;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=40;DPB=40;DPRA=1.66667;EPP=9.52472;EPPR=74.9036;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.972973;PAO=0;PQA=0;PQR=0;PRO=0;QA=123;QR=1470;RO=37;RPL=0;RPP=9.52472;RPPR=83.3548;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=36;SRP=74.9036;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:9,2:9:365:2:82:-4.46835,0,-29.9037 0/0:11:11,0:11:428:0:0:0,-3.31133,-38.8635 0/0:14:13,1:13:521:1:41:0,-0.119853,-43.1413 0/0:4:4,0:4:156:0:0:0,-1.20412,-14.4149 dDocent_Contig_16485 56 . C G 497.102 . AB=0.53125;ABP=3.28173;AC=2;AF=0.25;AN=8;AO=17;CIGAR=1X;DP=44;DPB=44;DPRA=2.66667;EPP=39.9253;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=689;QR=1056;RO=27;RPL=17;RPP=39.9253;RPPR=61.6401;RPR=0;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:7,11:7:283:11:449:-35.3473,0,-20.425 0/1:14:8,6:8:311:6:240:-17.7607,0,-24.1371 0/0:4:4,0:4:160:0:0:0,-1.20412,-14.7838 0/0:8:8,0:8:302:0:0:0,-2.40824,-27.5301 dDocent_Contig_16487 50 . G T 41.1656 . AB=0.176471;ABP=18.4661;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=55;DPB=55;DPRA=1.34211;EPP=9.52472;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.846154;PAO=0;PQA=0;PQR=0;PRO=0;QA=114;QR=1920;RO=52;RPL=3;RPP=9.52472;RPPR=115.927;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:14,3:14:509:3:114:-5.51447,0,-41.0315 0/0:13:13,0:13:470:0:0:0,-3.91339,-42.6323 0/0:16:16,0:16:619:0:0:0,-4.81648,-56.0499 0/0:9:9,0:9:322:0:0:0,-2.70927,-29.3228 dDocent_Contig_16488 12 . C T 152.222 . AB=0.135417;ABP=113.846;AC=2;AF=0.25;AN=8;AO=16;CIGAR=1X;DP=221;DPB=221;DPRA=0.648889;EPP=37.7539;EPPR=448.162;GTI=0;LEN=1;MEANALT=1;MQM=59.3125;MQMR=59.9854;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=0;PAIREDR=0.273171;PAO=0;PQA=0;PQR=0;PRO=0;QA=640;QR=7973;RO=205;RPL=0;RPP=37.7539;RPPR=448.162;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=205;SRP=448.162;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:50:47,3:47:1824:3:120:0,-3.8636,-153.184 0/0:75:75,0:75:2921:0:0:0,-22.5772,-262.988 0/1:68:60,8:60:2321:8:318:-8.51547,0,-188.585 0/1:28:23,5:23:907:5:202:-10.1046,0,-73.5049 dDocent_Contig_16489 12 . C T 33.3399 . AB=0.117647;ABP=46.1843;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X2M1X;DP=148;DPB=148;DPRA=0.894737;EPP=11.6962;EPPR=313.531;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.93007;PAO=0;PQA=0;PQR=0;PRO=0;QA=162;QR=5660;RO=143;RPL=0;RPP=11.6962;RPPR=313.531;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=143;SRP=313.531;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:34:30,4:30:1187:4:162:-4.73173,0,-96.8748 0|0:41:41,0:41:1629:0:0:0,-12.3422,-146.849 0|0:40:40,0:40:1581:0:0:0,-12.0412,-142.531 0|0:33:32,0:32:1263:0:0:0,-9.63296,-113.535 dDocent_Contig_16490 25 . C T 81.8269 . AB=0.2;ABP=22.5536;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=46;DPB=46;DPRA=0;EPP=16.0391;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=55.5;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.9;PAO=0;PQA=0;PQR=0;PRO=0;QA=234;QR=1595;RO=40;RPL=0;RPP=16.0391;RPPR=89.8692;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:14,4:14:562:4:163:-9.63989,0,-45.5046 0/0:21:20,1:20:796:1:33:0,-3.02249,-59.3488 0/1:7:6,1:6:237:1:38:-1.69006,0,-19.5948 ./.:.:.:.:.:.:.:. dDocent_Contig_16491 108 . A G 45.1203 . AB=0.16129;ABP=33.9012;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=126;DPB=126;DPRA=0.978947;EPP=13.8677;EPPR=265.758;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.8678;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=0.975207;PAO=0;PQA=0;PQR=0;PRO=0;QA=169;QR=3474;RO=121;RPL=0;RPP=13.8677;RPPR=265.758;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=265.758;SRR=121;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:49:49,0:49:1377:0:0:0,-14.7505,-124.189 0/1:31:26,5:26:762:5:169:-6.21099,0,-59.5298 0/0:24:24,0:24:700:0:0:0,-7.22472,-63.2819 0/0:22:22,0:22:635:0:0:0,-6.62266,-57.4301 dDocent_Contig_16493 58 . C T 1079.31 . AB=0.47541;ABP=3.33068;AC=5;AF=0.625;AN=8;AO=36;CIGAR=1X;DP=68;DPB=68;DPRA=0;EPP=81.1833;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1447;QR=1249;RO=32;RPL=36;RPP=81.1833;RPPR=72.4974;RPR=0;RUN=1;SAF=36;SAP=81.1833;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:15,14:15:571:14:561:-42.1025,0,-42.984 0/1:29:16,13:16:638:13:523:-38.6858,0,-49.0249 1/1:7:0,7:0:0:7:283:-25.843,-2.10721,0 0/1:3:1,2:1:40:2:80:-6.68848,0,-3.09259 dDocent_Contig_16494 8 . C T 354.024 . AB=0.308824;ABP=24.5973;AC=3;AF=0.375;AN=8;AO=22;CIGAR=1X;DP=91;DPB=91;DPRA=0;EPP=50.7827;EPPR=152.842;GTI=0;LEN=1;MEANALT=1;MQM=35.2273;MQMR=56.4348;NS=4;NUMALT=1;ODDS=0;PAIRED=0.954545;PAIREDR=0.913043;PAO=0;PQA=0;PQR=0;PRO=0;QA=854;QR=2653;RO=69;RPL=0;RPP=50.7827;RPPR=152.842;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=69;SRP=152.842;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:23:22,1:22:857:1:39:0,-3.88753,-73.1371 0/1:27:21,6:21:808:6:230:-9.3754,0,-58.9869 0/1:26:17,9:17:637:9:351:-17.3953,0,-49.8306 0/1:15:9,6:9:351:6:234:-14.0296,0,-27.4364 dDocent_Contig_16495 189 . G A 281.539 . AB=0.526316;ABP=3.12459;AC=1;AF=0.125;AN=8;AO=10;CIGAR=1X;DP=57;DPB=57;DPRA=1.5;EPP=24.725;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.957447;PAO=0;PQA=0;PQR=0;PRO=0;QA=388;QR=1880;RO=47;RPL=10;RPP=24.725;RPPR=105.07;RPR=0;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=105.07;SRR=47;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:9,10:9:366:10:388:-29.5517,0,-27.5856 0/0:30:30,0:30:1194:0:0:0,-9.0309,-107.74 0/0:4:4,0:4:161:0:0:0,-1.20412,-14.8755 0/0:4:4,0:4:159:0:0:0,-1.20412,-14.6908 dDocent_Contig_16496 15 . G A 111.898 . AB=0.368421;ABP=5.8675;AC=3;AF=0.375;AN=8;AO=7;CIGAR=1X;DP=21;DPB=21;DPRA=3.16667;EPP=18.2106;EPPR=33.4109;GTI=0;LEN=1;MEANALT=1;MQM=36.7143;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.142857;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=273;QR=548;RO=14;RPL=0;RPP=18.2106;RPPR=33.4109;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=14;SRP=33.4109;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:5:1,4:1:41:4:162:-10.1587,0,-2.58942 0/1:8:6,2:6:223:2:74:-4.37548,0,-18.0141 0/0:2:2,0:2:82:0:0:0,-0.60206,-7.77968 0/1:6:5,1:5:202:1:37:-1.41744,0,-16.7559 dDocent_Contig_16498 20 . A G 209.484 . AB=0.203125;ABP=52.0041;AC=4;AF=0.5;AN=8;AO=13;CIGAR=1X;DP=64;DPB=64;DPRA=0;EPP=31.2394;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=57.9231;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.923077;PAIREDR=0.843137;PAO=0;PQA=0;PQR=0;PRO=0;QA=516;QR=2038;RO=51;RPL=0;RPP=31.2394;RPPR=113.755;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:13,2:13:520:2:82:-3.26423,0,-42.6318 0/1:15:12,3:12:484:3:117:-6.39384,0,-39.3963 0/1:29:24,5:24:953:5:194:-8.72279,0,-77.3399 0/1:5:2,3:2:81:3:123:-9.95964,0,-6.18058 dDocent_Contig_16499 38 . T G 380.808 . AB=0.363636;ABP=10.1169;AC=3;AF=0.375;AN=8;AO=16;CIGAR=1X;DP=52;DPB=52;DPRA=1.83333;EPP=37.7539;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.833333;PAO=0;PQA=0;PQR=0;PRO=0;QA=618;QR=1444;RO=36;RPL=0;RPP=37.7539;RPPR=81.1833;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:9,6:9:359:6:240:-17.4602,0,-28.1579 0/1:24:17,7:17:688:7:262:-16.7074,0,-55.025 0/1:5:2,3:2:75:3:116:-9.31113,0,-5.61365 0/0:8:8,0:8:322:0:0:0,-2.40824,-29.3483 dDocent_Contig_16500 8 . C T 1384.05 . AB=0.3;ABP=72.4974;AC=3;AF=0.375;AN=8;AO=64;CIGAR=1X;DP=262;DPB=262;DPRA=0;EPP=141.985;EPPR=432.962;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.4848;NS=4;NUMALT=1;ODDS=0;PAIRED=0.9375;PAIREDR=0.944444;PAO=0;PQA=0;PQR=0;PRO=0;QA=2405;QR=7616;RO=198;RPL=0;RPP=141.985;RPPR=432.962;RPR=64;RUN=1;SAF=64;SAP=141.985;SAR=0;SRF=198;SRP=432.962;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:99:54,45:54:2086:45:1691:-122.644,0,-157.434 0/0:62:58,4:58:2236:4:149:0,-4.89058,-187.685 0/1:75:65,10:65:2497:10:376:-11.6116,0,-202.284 0/1:26:21,5:21:797:5:189:-9.54778,0,-64.1658 dDocent_Contig_16501 29 . A T 569.05 . AB=0.360656;ABP=13.2981;AC=3;AF=0.375;AN=8;AO=22;CIGAR=1X;DP=64;DPB=64;DPRA=6.77778;EPP=50.7827;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=884;QR=1676;RO=42;RPL=0;RPP=50.7827;RPPR=94.2121;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:35:29,6:29:1153:6:239:-11.3464,0,-93.5185 0/1:11:7,4:7:287:4:159:-11.3806,0,-22.8939 0/1:15:3,12:3:121:12:486:-39.5758,0,-6.76454 0/0:3:3,0:3:115:0:0:0,-0.90309,-10.7224 dDocent_Contig_16502 26 . C T 1273.58 . AB=0.741379;ABP=32.3626;AC=1;AF=0.125;AN=8;AO=43;CIGAR=9M1X3M;DP=196;DPB=193.462;DPRA=1.27473;EPP=96.3836;EPPR=300.502;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=1.38778e-17;PAIRED=1;PAIREDR=0.773723;PAO=0;PQA=0;PQR=0;PRO=0;QA=1517;QR=5348;RO=137;RPL=0;RPP=96.3836;RPPR=300.502;RPR=43;RUN=1;SAF=43;SAP=96.3836;SAR=0;SRF=137;SRP=300.502;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:58:15,0,0,43:15:593:0,0,43:0,0,1517:-119.336,-123.851,-172.663,-123.851,-172.663,-172.663,0,-49.1964,-49.1964,-36.2521 0|0:47:37,3,7,0:37:1453:3,7,0:103,274,0:-11.4208,-14.2597,-132.859,0,-111.238,-117.441,-22.5589,-133.762,-119.548,-142.073 0|0:67:61,0,4,0:61:2399:0,4,0:0,161,0:0,-18.3628,-215.68,-5.09845,-202.41,-201.206,-18.3628,-215.68,-202.41,-215.68 0|0:24:24,0,0,0:24:903:0,0,0:0,0,0:0,-7.22472,-81.5768,-7.22472,-81.5768,-81.5768,-7.22472,-81.5768,-81.5768,-81.5768 dDocent_Contig_16504 143 . C T 127.089 . AB=0.242424;ABP=22.0271;AC=4;AF=0.5;AN=8;AO=8;CIGAR=1X;DP=33;DPB=33;DPRA=0;EPP=20.3821;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=315;QR=988;RO=25;RPL=0;RPP=20.3821;RPPR=57.2971;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=57.2971;SRR=25;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:11,3:11:433:3:122:-7.15807,0,-35.1036 0/1:5:4,1:4:153:1:39:-2.39141,0,-12.6328 0/1:7:6,1:6:241:1:41:-1.98736,0,-19.9595 0/1:7:4,3:4:161:3:113:-8.42881,0,-12.7683 dDocent_Contig_16505 20 . A G 45.7576 . AB=0.4;ABP=3.44459;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=44;DPB=44;DPRA=1.09524;EPP=9.52472;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=123;QR=1644;RO=41;RPL=0;RPP=9.52472;RPPR=92.0407;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:18:18,0:18:725:0:0:0,-5.41854,-65.5736 0/0:18:17,1:17:683:1:41:0,-1.32397,-57.7049 0/1:5:3,2:3:119:2:82:-6.27453,0,-9.58986 0/0:3:3,0:3:117:0:0:0,-0.90309,-10.9093 dDocent_Contig_16507 15 . T C 107.234 . AB=0.115385;ABP=36.4176;AC=3;AF=0.375;AN=8;AO=3;CIGAR=1X4M;DP=58;DPB=58;DPRA=1.73333;EPP=9.52472;EPPR=105.07;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.87234;PAO=0;PQA=0;PQR=0;PRO=0;QA=118;QR=1847;RO=47;RPL=0;RPP=9.52472;RPPR=105.07;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:15:15,0,0:15:583:0,0:0,0:0,-4.51545,-52.8082,-4.51545,-52.8082,-52.8082 0|1:8:6,2,0:6:238:2,0:77,0:-4.90059,0,-19.3861,-6.70677,-19.9882,-26.3074 0|1:26:19,4,3:19:749:4,3:158,118:-7.28313,0,-60.4209,-3.29657,-51.9183,-64.0172 0|1:9:7,2,0:7:277:2,0:70,0:-3.93621,0,-22.5908,-6.04342,-23.1928,-28.8764 dDocent_Contig_16508 33 . G A 469.99 . AB=0.19685;ABP=104.386;AC=3;AF=0.375;AN=8;AO=30;CIGAR=1X;DP=191;DPB=191;DPRA=0;EPP=68.1545;EPPR=352.617;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.875776;PAO=0;PQA=0;PQR=0;PRO=0;QA=1188;QR=6292;RO=161;RPL=0;RPP=68.1545;RPPR=352.617;RPR=30;RUN=1;SAF=30;SAP=68.1545;SAR=0;SRF=161;SRP=352.617;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:64:59,5:59:2320:5:202:0,-0.703841,-190.406 0/1:43:36,7:36:1410:7:275:-12.1737,0,-114.208 0/1:50:35,15:35:1354:15:588:-38.205,0,-107.066 0/1:34:31,3:31:1208:3:123:-1.22977,0,-98.7651 dDocent_Contig_16509 14 . A G 70.566 . AB=0.333333;ABP=5.18177;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=34;DPB=34;DPRA=1.08;EPP=9.52472;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.741935;PAO=0;PQA=0;PQR=0;PRO=0;QA=123;QR=1224;RO=31;RPL=0;RPP=9.52472;RPPR=70.3259;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:6:6,0:6:238:0:0:0,-1.80618,-21.7932 0/1:9:6,3:6:239:3:123:-8.75552,0,-19.1752 0/0:14:14,0:14:549:0:0:0,-4.21442,-49.7535 0/0:5:5,0:5:198:0:0:0,-1.50515,-18.1971 dDocent_Contig_16510 160 . T G 227.741 . AB=0.197183;ABP=59.5603;AC=4;AF=0.5;AN=8;AO=14;CIGAR=1X;DP=71;DPB=71;DPRA=0;EPP=33.4109;EPPR=126.784;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=555;QR=2250;RO=57;RPL=14;RPP=33.4109;RPPR=126.784;RPR=0;RUN=1;SAF=0;SAP=33.4109;SAR=14;SRF=0;SRP=126.784;SRR=57;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:18,4:18:709:4:155:-7.7021,0,-57.5107 0/1:36:31,5:31:1246:5:195:-7.08628,0,-101.572 0/1:6:5,1:5:196:1:41:-2.28839,0,-16.2083 0/1:7:3,4:3:99:4:164:-13.0427,0,-7.12551 dDocent_Contig_16512 75 . A C 427.574 . AB=0.375;ABP=9.52472;AC=4;AF=0.5;AN=8;AO=18;CIGAR=1X1M1X;DP=48;DPB=48;DPRA=0;EPP=42.0968;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=701;QR=1144;RO=30;RPL=0;RPP=42.0968;RPPR=68.1545;RPR=18;RUN=1;SAF=0;SAP=42.0968;SAR=18;SRF=0;SRP=68.1545;SRR=30;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:14:8,6:8:306:6:235:-17.3075,0,-23.6862 0|1:15:13,2:13:499:2:78:-2.88802,0,-40.7425 0|1:10:4,6:4:155:6:233:-18.3298,0,-11.3151 0|1:9:5,4:5:184:4:155:-11.6162,0,-14.2078 dDocent_Contig_16513 1 . N A 1568.23 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=43;CIGAR=1X;DP=43;DPB=43;DPRA=0;EPP=96.3836;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1720;QR=0;RO=0;RPL=0;RPP=96.3836;RPPR=0;RPR=43;RUN=1;SAF=43;SAP=96.3836;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:21:0,21:0:0:21:835:-75.4617,-6.32163,0 1/1:17:0,17:0:0:17:685:-61.9798,-5.11751,0 1/1:3:0,3:0:0:3:120:-11.1873,-0.90309,0 1/1:2:0,2:0:0:2:80:-7.59157,-0.60206,0 dDocent_Contig_16514 134 . A T 572.427 . AB=0;ABP=0;AC=2;AF=0.25;AN=8;AO=16;CIGAR=1X;DP=94;DPB=94;DPRA=0.615385;EPP=37.7539;EPPR=172.385;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.38813e-21;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=629;QR=3113;RO=78;RPL=0;RPP=37.7539;RPPR=172.385;RPR=16;RUN=1;SAF=0;SAP=37.7539;SAR=16;SRF=0;SRP=172.385;SRR=78;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:67:67,0:67:2666:0:0:0,-20.169,-240.063 0/0:2:2,0:2:82:0:0:0,-0.60206,-7.77968 1/1:16:0,16:0:0:16:629:-56.9414,-4.81648,0 0/0:9:9,0:9:365:0:0:0,-2.70927,-33.2145 dDocent_Contig_16515 23 . C G 58.4483 . AB=0.136364;ABP=53.5464;AC=2;AF=0.25;AN=8;AO=9;CIGAR=1X1M1X;DP=86;DPB=86;DPRA=0;EPP=22.5536;EPPR=170.214;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=0.888889;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=351;QR=3066;RO=77;RPL=0;RPP=22.5536;RPPR=170.214;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=77;SRP=170.214;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:40:35,5:35:1392:5:200:-6.33834,0,-113.497 0|0:26:24,2:24:957:2:70:0,-1.1813,-79.7864 0|0:16:15,1:15:600:1:40:0,-0.820801,-50.3437 0|1:4:3,1:3:117:1:41:-2.89045,0,-9.70579 dDocent_Contig_16516 97 . C G 33.4864 . AB=0.4;ABP=3.44459;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X;DP=29;DPB=29;DPRA=0.625;EPP=7.35324;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=69;QR=878;RO=26;RPL=2;RPP=7.35324;RPPR=59.4686;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:14:13,0:13:435:0:0:0,-3.91339,-39.3828 0/1:5:3,2:3:99:2:69:-5.04713,0,-7.73229 0/0:8:8,0:8:278:0:0:0,-2.40824,-25.358 0/0:2:2,0:2:66:0:0:0,-0.60206,-6.26818 dDocent_Contig_16517 123 . A C 496.756 . AB=0.383333;ABP=10.1038;AC=3;AF=0.375;AN=8;AO=23;CIGAR=1X;DP=64;DPB=64;DPRA=5;EPP=52.9542;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1.66667;MQM=53.3043;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=792;QR=947;RO=39;RPL=0;RPP=52.9542;RPPR=87.6977;RPR=23;RUN=1;SAF=0;SAP=52.9542;SAR=23;SRF=0;SRP=87.6977;SRR=39;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:16,9:16:369:9:305:-20.0904,0,-25.8326 0/1:30:18,11:18:452:11:382:-25.6659,0,-32.118 0/0:4:4,0:4:101:0:0:0,-1.20412,-9.34086 0/1:4:1,3:1:25:3:105:-8.59204,0,-1.29574 dDocent_Contig_16518 58 . A T 840.03 . AB=0.111111;ABP=26.6552;AC=0;AF=0;AN=8;AO=2;CIGAR=1M1X3M1X1M;DP=114;DPB=106.286;DPRA=0;EPP=7.35324;EPPR=141.985;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=4;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=63;QR=2502;RO=64;RPL=2;RPP=7.35324;RPPR=141.985;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=64;SRP=141.985;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:43:15,3,0,4,19:15:587:3,0,4,19:117,0,159,742:-56.4686,-51.3667,-98.7233,-60.984,-99.6264,-109.244,-47.8936,-86.5362,-96.1536,-94.9495,0,-38.6392,-48.2563,-35.1659,-42.5367 0|0:42:30,0,0,2,8:30:1173:0,0,2,8:0,0,79,320:-17.333,-26.3639,-122.793,-26.3639,-122.793,-122.793,-19.8638,-116.292,-116.292,-115.69,0,-96.4324,-96.4324,-89.9315,-94.0241 0|0:18:10,0,2,0,5:10:390:0,2,0,5:0,63,0,197:-13.2245,-16.2348,-48.2988,-11.1893,-43.2416,-42.6395,-16.2348,-48.2988,-43.2416,-48.2988,0,-32.0897,-27.0356,-32.0897,-30.5845 0|0:11:9,0,0,0,2:9:352:0,0,0,2:0,0,0,81:-4.3744,-7.08367,-36.0134,-7.08367,-36.0134,-36.0134,-7.08367,-36.0134,-36.0134,-36.0134,0,-29.3318,-29.3318,-29.3318,-28.7297 dDocent_Contig_16519 7 . A T 450.974 . AB=0.268293;ABP=41.2494;AC=4;AF=0.5;AN=8;AO=22;CIGAR=1X;DP=82;DPB=82;DPRA=0;EPP=50.7827;EPPR=133.299;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=0.363636;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=832;QR=2292;RO=60;RPL=0;RPP=50.7827;RPPR=133.299;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:20,9:20:773:9:340:-22.2245,0,-61.1688 0/1:20:18,2:18:678:2:76:-1.19407,0,-55.3285 0/1:30:20,10:20:764:10:377:-25.2502,0,-60.0565 0/1:3:2,1:2:77:1:39:-2.99347,0,-6.40605 dDocent_Contig_16520 29 . C T 35.4765 . AB=0.25;ABP=7.35324;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=52;DPB=52;DPRA=0.363636;EPP=7.35324;EPPR=47.4821;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=8.67362e-19;PAIRED=0;PAIREDR=0.6;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=1924;RO=50;RPL=0;RPP=7.35324;RPPR=111.584;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=41;SRP=47.4821;SRR=9;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:28:28,0:28:1040:0:0:0,-8.42884,-93.8961 0/1:8:6,2:6:243:2:82:-5.37144,0,-19.8399 0/0:16:16,0:16:641:0:0:0,-4.81648,-58.0226 ./.:.:.:.:.:.:.:. dDocent_Contig_16521 143 . T C 45.7572 . AB=0.4;ABP=3.44459;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X;DP=23;DPB=23;DPRA=0.833333;EPP=7.35324;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=830;RO=21;RPL=0;RPP=7.35324;RPPR=48.6112;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=48.6112;SRR=21;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:3:3,0:3:99:0:0:0,-0.90309,-9.23234 0/0:6:6,0:6:245:0:0:0,-1.80618,-22.4295 0/1:5:3,2:3:122:2:82:-6.27453,0,-9.86734 0/0:9:9,0:9:364:0:0:0,-2.70927,-33.1248 dDocent_Contig_16522 9 . A C 128.143 . AB=0.2;ABP=38.1882;AC=3;AF=0.375;AN=8;AO=10;CIGAR=1X;DP=71;DPB=71;DPRA=0;EPP=24.725;EPPR=135.47;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.8;PAIREDR=0.590164;PAO=0;PQA=0;PQR=0;PRO=0;QA=364;QR=2337;RO=61;RPL=0;RPP=24.725;RPPR=135.47;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=61;SRP=135.47;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:9,3:9:344:3:111:-6.74042,0,-27.7054 0/0:26:25,1:25:963:1:39:0,-3.93022,-83.0877 0/1:22:17,5:17:642:5:175:-9.46763,0,-51.4907 0/1:11:10,1:10:388:1:39:-0.585235,0,-31.9667 dDocent_Contig_16525 45 . A G 75.5287 . AB=0.208333;ABP=20.744;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=56;DPB=56;DPRA=2.25;EPP=13.8677;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.2;PAIREDR=0.843137;PAO=0;PQA=0;PQR=0;PRO=0;QA=176;QR=1996;RO=51;RPL=0;RPP=13.8677;RPPR=113.755;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:19,5:19:759:5:176:-8.95078,0,-61.4082 0/0:20:20,0:20:784:0:0:0,-6.0206,-70.8809 0/0:6:6,0:6:239:0:0:0,-1.80618,-21.8824 0/0:6:6,0:6:214:0:0:0,-1.80618,-19.6007 dDocent_Contig_16526 174 . T C 270.49 . AB=0.291667;ABP=12.0581;AC=3;AF=0.375;AN=8;AO=10;CIGAR=1X;DP=46;DPB=46;DPRA=1.42105;EPP=24.725;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.888889;PAO=0;PQA=0;PQR=0;PRO=0;QA=388;QR=1410;RO=36;RPL=10;RPP=24.725;RPPR=81.1833;RPR=0;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=81.1833;SRR=36;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:17,7:17:647:7:266:-17.0743,0,-51.3233 0/0:14:14,0:14:563:0:0:0,-4.21442,-51.0132 1/1:3:0,3:0:0:3:122:-11.3725,-0.90309,0 0/0:5:5,0:5:200:0:0:0,-1.50515,-18.3795 dDocent_Contig_16527 14 . C A 456.847 . AB=0.431818;ABP=4.78696;AC=4;AF=0.5;AN=8;AO=19;CIGAR=1X;DP=44;DPB=44;DPRA=0;EPP=36.0395;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=59.5789;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.473684;PAIREDR=0.96;PAO=0;PQA=0;PQR=0;PRO=0;QA=721;QR=985;RO=25;RPL=0;RPP=44.2683;RPPR=57.2971;RPR=19;RUN=1;SAF=18;SAP=36.0395;SAR=1;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:14,6:14:561:6:241:-16.0457,0,-44.8113 0/1:16:7,9:7:273:9:335:-25.6767,0,-20.1193 0/1:5:3,2:3:110:2:63:-4.47644,0,-8.75283 0/1:3:1,2:1:41:2:82:-6.87659,0,-3.19148 dDocent_Contig_16528 135 . A G 219.406 . AB=0.153846;ABP=16.5402;AC=4;AF=0.5;AN=8;AO=8;CIGAR=2X;DP=26;DPB=26;DPRA=0.904762;EPP=20.3821;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.875;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=303;QR=681;RO=18;RPL=0;RPP=20.3821;RPPR=42.0968;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=42.0968;SRR=18;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:7:7,0:7:264:0:0:0,-2.10721,-24.1206 0|1:9:8,1:8:303:1:39:-1.18729,0,-24.9201 0|1:4:3,1:3:114:1:40:-2.79156,0,-9.42823 1|1:6:0,6:0:0:6:224:-20.514,-1.80618,0 dDocent_Contig_16532 75 . T C 46.4276 . AB=0.333333;ABP=5.18177;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=48;DPB=48;DPRA=0.692308;EPP=9.52472;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=97;QR=1423;RO=45;RPL=3;RPP=9.52472;RPPR=100.727;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:14:14,0:14:463:0:0:0,-4.21442,-41.9881 0/1:9:6,3:6:192:3:97:-6.34166,0,-14.8853 0/0:21:21,0:21:635:0:0:0,-6.32163,-57.4367 0/0:4:4,0:4:133:0:0:0,-1.20412,-12.2988 dDocent_Contig_16533 167 . G A 188.148 . AB=0.333333;ABP=9.52472;AC=2;AF=0.25;AN=8;AO=9;CIGAR=1X;DP=33;DPB=33;DPRA=4.5;EPP=5.18177;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=329;QR=978;RO=24;RPL=3;RPP=5.18177;RPPR=55.1256;RPR=6;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=55.1256;SRR=24;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:8:2,6:2:81:6:208:-16.6514,0,-5.27749 0/0:1:1,0:1:41:0:0:0,-0.30103,-4.09457 0/0:5:5,0:5:201:0:0:0,-1.50515,-18.4709 0/1:19:16,3:16:655:3:121:-5.56063,0,-53.562 dDocent_Contig_16534 27 . A G 661.461 . AB=0.489796;ABP=3.05462;AC=3;AF=0.5;AN=6;AO=24;CIGAR=1X;DP=49;DPB=49;DPRA=0;EPP=55.1256;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=948;QR=999;RO=25;RPL=0;RPP=55.1256;RPPR=57.2971;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 0/1:10:5,5:5:196:5:194:-14.8217,0,-15.0035 0/1:26:9,17:9:361:17:672:-52.979,0,-25.0271 0/1:13:11,2:11:442:2:82:-3.86629,0,-36.2224 dDocent_Contig_16535 1 . N G 250.124 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=5;CIGAR=1X4M;DP=8;DPB=8;DPRA=1.66667;EPP=13.8677;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=199;QR=0;RO=0;RPL=0;RPP=13.8677;RPPR=0;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. 1|1:5:0,0,5:0:0:0,5:0,199:-18.2884,-18.2884,-18.2884,-1.50515,-1.50515,0 .:.:.:.:.:.:.:. 1|1:3:0,3,0:0:0:3,0:101,0:-6.42233,-0.90309,0,-6.42233,-0.90309,-6.42233 dDocent_Contig_16536 28 . T C 45.1769 . AB=0.5;ABP=3.0103;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X;DP=35;DPB=35;DPRA=0.387097;EPP=7.35324;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=4.33681e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=75;QR=1232;RO=33;RPL=0;RPP=7.35324;RPPR=74.6689;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:4:2,2:2:77:2:75:-5.91547,0,-6.10502 0/0:9:9,0:9:353:0:0:0,-2.70927,-32.1314 0/0:19:19,0:19:686:0:0:0,-5.71957,-62.0528 0/0:3:3,0:3:116:0:0:0,-0.90309,-10.8174 dDocent_Contig_16537 38 . A G 120.128 . AB=0.3125;ABP=7.89611;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=29;DPB=29;DPRA=2.46154;EPP=13.8677;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.4;PAIREDR=0.708333;PAO=0;PQA=0;PQR=0;PRO=0;QA=203;QR=946;RO=24;RPL=0;RPP=13.8677;RPPR=55.1256;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:3:3,0:3:122:0:0:0,-0.90309,-11.3725 0/0:10:10,0:10:384:0:0:0,-3.0103,-34.9073 0/1:16:11,5:11:440:5:203:-13.8366,0,-35.1379 ./.:.:.:.:.:.:.:. dDocent_Contig_16538 41 . C T 223.043 . AB=0.3;ABP=13.4334;AC=2;AF=0.25;AN=8;AO=9;CIGAR=1X;DP=59;DPB=59;DPRA=1.03448;EPP=22.5536;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=57.92;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.92;PAO=0;PQA=0;PQR=0;PRO=0;QA=367;QR=1964;RO=50;RPL=0;RPP=22.5536;RPPR=111.584;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:12,8:12:471:8:326:-23.6893,0,-36.1549 0/0:16:16,0:16:640:0:0:0,-4.81648,-56.1909 0/0:13:13,0:13:488:0:0:0,-3.91339,-44.2466 0/1:10:9,1:9:365:1:41:-1.08427,0,-30.2046 dDocent_Contig_16539 7 . A G 145.925 . AB=0.470588;ABP=3.13803;AC=2;AF=0.25;AN=8;AO=8;CIGAR=1X;DP=45;DPB=45;DPRA=0.607143;EPP=20.3821;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=249;QR=1408;RO=37;RPL=0;RPP=20.3821;RPPR=83.3548;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:4:3,1:3:115:1:38:-2.59315,0,-9.52091 0/1:13:6,7:6:233:7:211:-15.3705,0,-17.4267 0/0:16:16,0:16:618:0:0:0,-4.81648,-55.9599 0/0:12:12,0:12:442:0:0:0,-3.61236,-40.1194 dDocent_Contig_16540 127 . G T 106.575 . AB=0.416667;ABP=3.73412;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=29;DPB=29;DPRA=1.41176;EPP=13.8677;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=175;QR=827;RO=24;RPL=0;RPP=13.8677;RPPR=55.1256;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=55.1256;SRR=24;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 0/0:12:12,0:12:403:0:0:0,-3.61236,-36.5886 0/1:12:7,5:7:251:5:175:-12.4813,0,-19.3255 0/0:5:5,0:5:173:0:0:0,-1.50515,-15.9098 dDocent_Contig_16541 17 . G A 429.227 . AB=0.535714;ABP=3.32051;AC=1;AF=0.125;AN=8;AO=15;CIGAR=1X2M1X;DP=46;DPB=47.5;DPRA=4.66667;EPP=35.5824;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=56.2667;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=2;PQA=74;PQR=74;PRO=2;QA=603;QR=1191;RO=30;RPL=0;RPP=35.5824;RPPR=68.1545;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:9:8,0:8:315:0:0:0,-2.40824,-28.3415 0|1:28:13,15:13:516:15:603:-44.6215,0,-38.3589 0|0:6:6,0:6:239:0:0:0,-1.80618,-21.8839 0|0:3:3,0:3:121:0:0:0,-0.90309,-11.2802 dDocent_Contig_16542 21 . T C 267.453 . AB=0.240741;ABP=34.5369;AC=3;AF=0.375;AN=8;AO=13;CIGAR=1X;DP=85;DPB=85;DPRA=0.580645;EPP=31.2394;EPPR=159.356;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.846154;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=525;QR=2877;RO=72;RPL=0;RPP=31.2394;RPPR=159.356;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=72;SRP=159.356;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:22,4:22:890:4:159:-6.86466,0,-72.5801 0/0:31:31,0:31:1246:0:0:0,-9.33193,-112.41 0/1:18:12,6:12:458:6:246:-17.1016,0,-36.1405 0/1:10:7,3:7:283:3:120:-8.17701,0,-22.8327 dDocent_Contig_16545 52 . A G 1575.65 . AB=0.0574713;ABP=446.964;AC=0;AF=0;AN=8;AO=15;CIGAR=1X1M1X2M1X1M1X;DP=261;DPB=261;DPRA=0;EPP=35.5824;EPPR=383.018;GTI=0;LEN=1;MEANALT=2;MQM=18;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.942857;PAO=0;PQA=0;PQR=0;PRO=0;QA=560;QR=6742;RO=175;RPL=15;RPP=35.5824;RPPR=383.018;RPR=0;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=175;SRP=383.018;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:84:44,8,32:44:1663:8,32:303,1170:-82.4726,-85.2358,-219.128,0,-125.972,-126.828 0|0:61:43,2,16:43:1693:2,16:75,600:-36.3626,-46.7007,-185.389,0,-136.863,-134.665 0|0:80:66,1,13:66:2534:1,13:39,517:-22.8975,-41.4651,-249.141,0,-206.877,-204.276 0|0:36:22,4,10:22:852:4,10:143,364:-23.2306,-24.6583,-93.4508,0,-64.9407,-67.1461 dDocent_Contig_16546 20 . A C 166.925 . AB=0.545455;ABP=3.20771;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=54;DPB=54;DPRA=0.767442;EPP=16.0391;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=237;QR=1923;RO=48;RPL=0;RPP=16.0391;RPPR=107.241;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:19:19,0:19:770:0:0:0,-5.71957,-69.6203 0/0:21:21,0:21:829:0:0:0,-6.32163,-74.9251 0/0:3:3,0:3:120:0:0:0,-0.90309,-11.1877 0/1:11:5,6:5:204:6:237:-18.3913,0,-15.4327 dDocent_Contig_16547 38 . G A 640.31 . AB=0.469388;ABP=3.40914;AC=3;AF=0.375;AN=8;AO=24;CIGAR=1X;DP=71;DPB=71;DPRA=0;EPP=55.1256;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.916667;PAIREDR=0.93617;PAO=0;PQA=0;PQR=0;PRO=0;QA=964;QR=1906;RO=47;RPL=0;RPP=55.1256;RPPR=105.07;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:10,14:10:407:14:556:-43.1522,0,-29.7659 0/1:14:9,5:9:364:5:204:-14.5296,0,-28.9095 0/1:11:7,4:7:283:4:163:-11.7471,0,-22.532 0/0:22:21,1:21:852:1:41:0,-2.52809,-72.8962 dDocent_Contig_16549 25 . G T 504.365 . AB=0.395833;ABP=7.5342;AC=3;AF=0.5;AN=6;AO=19;CIGAR=1X;DP=48;DPB=48;DPRA=0;EPP=44.2683;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=770;QR=1154;RO=29;RPL=0;RPP=44.2683;RPPR=65.983;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:13,9:13:519:9:368:-26.8627,0,-40.4336 0/1:20:12,8:12:473:8:326:-23.6893,0,-36.8967 ./.:.:.:.:.:.:.:. 0/1:6:4,2:4:162:2:76:-5.40736,0,-13.1606 dDocent_Contig_16550 74 . C T 128.083 . AB=0.625;ABP=4.09604;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=50;DPB=50;DPRA=2.44444;EPP=18.2106;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=0.714286;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=258;QR=1638;RO=43;RPL=7;RPP=18.2106;RPPR=96.3836;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:23:22,1:22:842:1:39:0,-3.02713,-72.2023 0/0:13:12,1:12:448:1:35:0,-0.414761,-37.1653 0/0:6:6,0:6:234:0:0:0,-1.80618,-21.4311 0/1:8:3,5:3:114:5:184:-14.5069,0,-8.22374 dDocent_Contig_16551 14 . C T 810.245 . AB=0.59375;ABP=5.45321;AC=6;AF=0.75;AN=8;AO=27;CIGAR=1X;DP=40;DPB=40;DPRA=0;EPP=61.6401;EPPR=31.2394;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.925926;PAIREDR=0.923077;PAO=0;PQA=0;PQR=0;PRO=0;QA=1029;QR=492;RO=13;RPL=0;RPP=61.6401;RPPR=31.2394;RPR=27;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=13;SRP=31.2394;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:8,7:8:299:7:276:-20.693,0,-22.7395 1/1:3:0,3:0:0:3:116:-10.8174,-0.90309,0 1/1:5:0,5:0:0:5:184:-16.9163,-1.50515,0 0/1:17:5,12:5:193:12:453:-35.9957,0,-12.6234 dDocent_Contig_16552 14 . A G 871.915 . AB=0.391304;ABP=12.4515;AC=4;AF=0.5;AN=8;AO=36;CIGAR=1X;DP=92;DPB=92;DPRA=0;EPP=81.1833;EPPR=105.701;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.944444;PAIREDR=0.890909;PAO=0;PQA=0;PQR=0;PRO=0;QA=1345;QR=2181;RO=55;RPL=0;RPP=81.1833;RPPR=122.441;RPR=36;RUN=1;SAF=36;SAP=81.1833;SAR=0;SRF=53;SRP=105.701;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:9,5:9:351:5:165:-10.955,0,-27.7289 0/1:19:15,4:15:597:4:148:-7.95622,0,-48.35 0/1:29:25,4:25:989:4:134:-3.65554,0,-80.5787 0/1:30:6,23:6:244:23:898:-72.0203,0,-13.2255 dDocent_Contig_16553 63 . G T 68.93 . AB=0.2;ABP=22.5536;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=38;DPB=38;DPRA=5.76923;EPP=13.8677;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=0.2;PAIREDR=0.939394;PAO=0;PQA=0;PQR=0;PRO=0;QA=172;QR=1260;RO=33;RPL=5;RPP=13.8677;RPPR=74.6689;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:20,5:20:774:5:172:-8.29034,0,-62.4509 0/0:5:5,0:5:187:0:0:0,-1.50515,-17.1873 0/0:7:7,0:7:259:0:0:0,-2.10721,-23.6585 0/0:1:1,0:1:40:0:0:0,-0.30103,-3.99568 dDocent_Contig_16554 17 . C A 277.614 . AB=0.237288;ABP=38.3795;AC=2;AF=0.333333;AN=6;AO=14;CIGAR=1X;DP=60;DPB=60;DPRA=29.5;EPP=33.4109;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=537;QR=1843;RO=46;RPL=0;RPP=33.4109;RPPR=102.898;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:40:35,5:35:1405:5:185:-4.96351,0,-114.662 0/1:19:10,9:10:397:9:352:-26.3199,0,-30.3644 ./.:.:.:.:.:.:.:. 0/0:1:1,0:1:41:0:0:0,-0.30103,-4.09457 dDocent_Contig_16555 38 . T C 224.706 . AB=0.5;ABP=3.0103;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X;DP=71;DPB=71;DPRA=1.08824;EPP=22.5536;EPPR=137.642;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=358;QR=2495;RO=62;RPL=0;RPP=22.5536;RPPR=137.642;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:18:18,0:18:724:0:0:0,-5.41854,-65.4851 0/0:21:20,1:20:808:1:40:0,-2.32595,-69.0404 0/0:16:16,0:16:645:0:0:0,-4.81648,-58.3835 0/1:16:8,8:8:318:8:318:-24.1696,0,-24.1698 dDocent_Contig_16556 9 . T C 73.1284 . AB=0.5;ABP=3.0103;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1M1D1M1X;DP=34;DPB=33.25;DPRA=0.642857;EPP=9.52472;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=116;QR=1177;RO=31;RPL=0;RPP=9.52472;RPPR=70.3259;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:20:20,0:20:760:0:0:0,-6.0206,-68.7273 0|1:6:3,3:3:115:3:116:-9.01152,0,-8.91871 0|0:6:6,0:6:228:0:0:0,-1.80618,-20.8842 0|0:2:2,0:2:74:0:0:0,-0.60206,-7.02543 dDocent_Contig_16557 202 . C A 108.482 . AB=0.5;ABP=3.0103;AC=3;AF=0.375;AN=8;AO=4;CIGAR=1X;DP=18;DPB=18;DPRA=0.636364;EPP=11.6962;EPPR=33.4109;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=148;QR=514;RO=14;RPL=4;RPP=11.6962;RPPR=33.4109;RPR=0;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=33.4109;SRR=14;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:6:6,0:6:218:0:0:0,-1.80618,-19.9729 1/1:1:0,1:0:0:1:37:-3.69783,-0.30103,0 0/1:6:3,3:3:111:3:111:-8.54774,0,-8.54774 0/0:5:5,0:5:185:0:0:0,-1.50515,-17.01 dDocent_Contig_16558 106 . N T 363.332 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=12;CIGAR=2X;DP=13;DPB=13;DPRA=0;EPP=29.068;EPPR=0;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=0;NS=4;NUMALT=1;ODDS=4.33681e-19;PAIRED=0.0833333;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=387;QR=0;RO=0;RPL=0;RPP=29.068;RPPR=0;RPR=12;RUN=1;SAF=0;SAP=29.068;SAR=12;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:1:0,1:0:0:1:34:-3.39891,-0.30103,0 1|1:8:0,7:0:0:7:239:-21.5039,-2.10721,0 1|1:2:0,2:0:0:2:53:-5.03367,-0.60206,0 1|1:2:0,2:0:0:2:61:-5.79353,-0.60206,0 dDocent_Contig_16559 166 . T A 42.1676 . AB=0.666667;ABP=3.73412;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X;DP=48;DPB=48;DPRA=0.2;EPP=7.35324;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=71;QR=1736;RO=46;RPL=2;RPP=7.35324;RPPR=102.898;RPR=0;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=102.898;SRR=46;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:27:27,0:27:1011:0:0:0,-8.12781,-91.2686 0/0:15:15,0:15:578:0:0:0,-4.51545,-52.3538 0/1:3:1,2:1:30:2:71:-5.83634,0,-2.09648 0/0:3:3,0:3:117:0:0:0,-0.90309,-10.9102 dDocent_Contig_16561 77 . G C 169.579 . AB=0.25641;ABP=23.1103;AC=4;AF=0.5;AN=8;AO=10;CIGAR=1X;DP=39;DPB=39;DPRA=0;EPP=24.725;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=381;QR=1112;RO=29;RPL=10;RPP=24.725;RPPR=65.983;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:15,6:15:572:6:234:-15.1095,0,-45.4996 0/1:5:4,1:4:156:1:37:-2.19268,0,-12.9121 0/1:6:4,2:4:153:2:71:-4.9349,0,-12.3352 0/1:7:6,1:6:231:1:39:-1.78935,0,-19.0505 dDocent_Contig_16564 129 . C G 62.6041 . AB=0.266667;ABP=10.1038;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=27;DPB=27;DPRA=2.5;EPP=11.6962;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=133;QR=793;RO=23;RPL=0;RPP=11.6962;RPPR=52.9542;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=52.9542;SRR=23;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:11,4:11:379:4:133:-7.78319,0,-29.9268 0/0:8:8,0:8:278:0:0:0,-2.40824,-25.358 0/0:4:4,0:4:136:0:0:0,-1.20412,-12.5759 ./.:.:.:.:.:.:.:. dDocent_Contig_16565 22 . C T 426.373 . AB=0.5;ABP=3.0103;AC=1;AF=0.166667;AN=6;AO=16;CIGAR=1X;DP=87;DPB=87;DPRA=1.16364;EPP=37.7539;EPPR=157.185;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.929577;PAO=0;PQA=0;PQR=0;PRO=0;QA=594;QR=2827;RO=71;RPL=0;RPP=37.7539;RPPR=157.185;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=71;SRP=157.185;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:32:16,16:16:645:16:594:-44.1602,0,-48.7497 0/0:37:37,0:37:1468:0:0:0,-11.1381,-132.352 0/0:18:18,0:18:714:0:0:0,-5.41854,-64.5838 ./.:.:.:.:.:.:.:. dDocent_Contig_16566 27 . G C 870.722 . AB=0.125;ABP=22.5536;AC=0;AF=0;AN=8;AO=2;CIGAR=1X3M1X;DP=75;DPB=75;DPRA=0;EPP=7.35324;EPPR=92.0407;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0.682927;PAO=0;PQA=0;PQR=0;PRO=0;QA=79;QR=1594;RO=41;RPL=0;RPP=7.35324;RPPR=92.0407;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:16:8,2,6:8:315:2,6:79,243:-17.6367,-13.5464,-38.8522,0,-19.412,-24.107 0|0:30:17,0,13:17:657:0,13:0,521:-38.2071,-43.3246,-97.2704,0,-54.3399,-50.4265 0|0:17:9,0,8:9:358:0,8:0,326:-24.5922,-27.3014,-56.7733,0,-29.8743,-27.4661 0|0:12:7,0,5:7:264:0,5:0,192:-14.0342,-16.1414,-37.7646,0,-22.0039,-20.4988 dDocent_Contig_16567 125 . T C 78.1041 . AB=0.363636;ABP=4.78696;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=23;DPB=23;DPRA=0.9375;EPP=13.8677;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=149;QR=524;RO=18;RPL=0;RPP=13.8677;RPPR=42.0968;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=42.0968;SRR=18;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:8:8,0:8:223:0:0:0,-2.40824,-20.3422 0/1:11:7,4:7:208:4:140:-9.6336,0,-15.7001 0/0:4:3,1:3:93:1:9:0,-0.304123,-7.77736 ./.:.:.:.:.:.:.:. dDocent_Contig_16568 30 . T A 3375.34 . AB=0.558824;ABP=5.05404;AC=6;AF=0.75;AN=8;AO=104;CIGAR=1X;DP=137;DPB=137;DPRA=0;EPP=228.843;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4128;QR=1322;RO=33;RPL=0;RPP=228.843;RPPR=74.6689;RPR=104;RUN=1;SAF=104;SAP=228.843;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:45:16,29:16:636:29:1134:-88.7889,0,-44.0297 1/1:56:3,53:3:121:53:2128:-180.421,-5.57748,0 0/1:23:14,9:14:565:9:355:-25.3858,0,-44.2676 1/1:13:0,13:0:0:13:511:-46.3358,-3.91339,0 dDocent_Contig_16569 27 . C A 163.552 . AB=0.296296;ABP=12.7417;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=71;DPB=71;DPRA=0.306818;EPP=12.7819;EPPR=139.813;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.875;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=303;QR=2481;RO=63;RPL=0;RPP=20.3821;RPPR=139.813;RPR=8;RUN=1;SAF=7;SAP=12.7819;SAR=1;SRF=63;SRP=139.813;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:7:3,4:3:111:4:148:-11.5739,0,-8.24557 0/0:44:44,0:44:1747:0:0:0,-13.2453,-157.459 0/1:20:16,4:16:623:4:155:-8.30413,0,-50.3788 ./.:.:.:.:.:.:.:. dDocent_Contig_16570 20 . C A 189.131 . AB=0.296296;ABP=12.7417;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=102;DPB=102;DPRA=1.08;EPP=20.3821;EPPR=207.129;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=312;QR=3794;RO=94;RPL=0;RPP=20.3821;RPPR=207.129;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=94;SRP=207.129;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:19,8:19:761:8:312:-20.3111,0,-60.6841 0/0:31:31,0:31:1263:0:0:0,-9.33193,-113.932 0/0:27:27,0:27:1098:0:0:0,-8.12781,-99.1029 0/0:17:17,0:17:672:0:0:0,-5.11751,-60.8089 dDocent_Contig_16571 14 . T C 1285.16 . AB=0.26699;ABP=100.157;AC=4;AF=0.5;AN=8;AO=55;CIGAR=1X;DP=206;DPB=206;DPRA=0;EPP=122.441;EPPR=330.903;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2184;QR=5840;RO=151;RPL=0;RPP=122.441;RPPR=330.903;RPR=55;RUN=1;SAF=55;SAP=122.441;SAR=0;SRF=151;SRP=330.903;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:72:50,22:50:1956:22:870:-56.9312,0,-154.589 0/1:90:79,11:79:3041:11:449:-13.6732,0,-246.725 0/1:27:15,12:15:581:12:463:-33.8867,0,-44.5024 0/1:17:7,10:7:262:10:402:-31.4226,0,-18.8186 dDocent_Contig_16572 34 . G A 88.0388 . AB=0;ABP=0;AC=0;AF=0;AN=8;AO=9;CIGAR=1M1D1X6M;DP=341;DPB=340;DPRA=1;EPP=22.5536;EPPR=626.223;GTI=0;LEN=1;MEANALT=3.5;MQM=33;MQMR=57.7979;NS=4;NUMALT=4;ODDS=0;PAIRED=0;PAIREDR=0.585366;PAO=0;PQA=0;PQR=0;PRO=0;QA=297;QR=10613;RO=287;RPL=0;RPP=22.5536;RPPR=626.223;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=287;SRP=626.223;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:87:79,5,0,0,0:79:2930:5,0,0,0:165,0,0,0:0,-11.8468,-247.151,-23.7814,-248.656,-260.643,-23.7814,-248.656,-260.643,-260.643,-23.7814,-248.656,-260.643,-260.643,-260.643 0|0:109:93,4,3,7,2:93:3444:4,3,7,2:132,120,265,79:0,-18.4236,-290.383,-18.1022,-281.702,-290.389,-6.80885,-270.407,-270.111,-277.89,-21.4904,-285.086,-284.791,-273.496,-294.074 0|0:98:83,0,0,3,7:83:3066:0,0,3,7:0,0,113,286:0,-24.9855,-271.169,-24.9855,-271.169,-271.169,-16.0023,-262.181,-262.181,-261.278,-1.36862,-247.567,-247.567,-238.578,-245.459 0|0:47:32,0,3,4,6:32:1173:0,3,4,6:0,111,162,244:-10.5028,-20.1358,-115.977,-11.0603,-106.896,-105.993,-6.77318,-102.616,-93.5349,-101.412,0,-95.8455,-86.7645,-82.4837,-94.0394 dDocent_Contig_16573 10 . T A 109.513 . AB=0.5;ABP=3.0103;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=115;DPB=115;DPRA=0.224299;EPP=11.6962;EPPR=244.044;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=163;QR=4454;RO=111;RPL=0;RPP=11.6962;RPPR=244.044;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=111;SRP=244.044;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:59:59,0:59:2372:0:0:0,-17.7608,-213.629 0/0:43:43,0:43:1720:0:0:0,-12.9443,-155.016 0/1:8:4,4:4:163:4:163:-12.6502,0,-12.6502 0/0:5:5,0:5:199:0:0:0,-1.50515,-18.2874 dDocent_Contig_16574 127 . T A 59.5373 . AB=0.294118;ABP=9.26925;AC=2;AF=0.25;AN=8;AO=5;CIGAR=1X;DP=27;DPB=27;DPRA=1.7;EPP=13.8677;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=153;QR=844;RO=22;RPL=0;RPP=13.8677;RPPR=50.7827;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=50.7827;SRR=22;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:1:1,0:1:35:0:0:0,-0.30103,-3.49863 0/1:11:7,4:7:268:4:118:-7.60175,0,-21.1723 0/0:9:9,0:9:349:0:0:0,-2.70927,-31.7708 0/1:6:5,1:5:192:1:35:-1.69245,0,-15.8438 dDocent_Contig_16575 7 . A C 72.6027 . AB=0.1875;ABP=30.1537;AC=3;AF=0.375;AN=8;AO=6;CIGAR=1X;DP=38;DPB=38;DPRA=1.77778;EPP=16.0391;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=229;QR=1242;RO=32;RPL=0;RPP=16.0391;RPPR=72.4974;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:8,3:8:311:3:114:-7.32089,0,-25.043 0/1:19:17,2:17:659:2:76:-1.49524,0,-53.9276 0/1:2:1,1:1:39:1:39:-3.2945,0,-3.2945 0/0:6:6,0:6:233:0:0:0,-1.80618,-21.3401 dDocent_Contig_16576 79 . G C 34.3494 . AB=0.176471;ABP=18.4661;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=40;DPB=40;DPRA=1.47826;EPP=9.52472;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.666667;PAIREDR=0.864865;PAO=0;PQA=0;PQR=0;PRO=0;QA=108;QR=1292;RO=37;RPL=3;RPP=9.52472;RPPR=83.3548;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:14,3:14:474:3:108:-4.95766,0,-37.8645 0/0:9:9,0:9:317:0:0:0,-2.70927,-28.8699 0/0:14:14,0:14:501:0:0:0,-4.21442,-45.4268 ./.:.:.:.:.:.:.:. dDocent_Contig_16577 34 . C A 1172.22 . AB=0.518987;ABP=3.25768;AC=4;AF=0.5;AN=8;AO=41;CIGAR=1X;DP=79;DPB=79;DPRA=0;EPP=92.0407;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=0.973684;PAO=0;PQA=0;PQR=0;PRO=0;QA=1633;QR=1509;RO=38;RPL=0;RPP=92.0407;RPPR=85.5263;RPR=41;RUN=1;SAF=41;SAP=92.0407;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:9,7:9:360:7:286:-21.2983,0,-27.9475 0/1:30:5,25:5:188:25:983:-79.7295,0,-8.24932 0/1:20:17,3:17:681:3:120:-5.16671,0,-55.6004 0/1:13:7,6:7:280:6:244:-18.4252,0,-21.6578 dDocent_Contig_16578 1 . N G 96.8913 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=48;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=120;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:120:-9.68858,-0.90309,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_16580 1 . N G 440.588 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=12;CIGAR=1X;DP=12;DPB=12;DPRA=0;EPP=29.068;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=4;NUMALT=1;ODDS=3.38813e-21;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=466;QR=0;RO=0;RPL=0;RPP=29.068;RPPR=0;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:115:-10.725,-0.90309,0 1/1:4:0,4:0:0:4:156:-14.4173,-1.20412,0 1/1:3:0,3:0:0:3:117:-10.9104,-0.90309,0 1/1:2:0,2:0:0:2:78:-7.40347,-0.60206,0 dDocent_Contig_16581 9 . T A 96.1645 . AB=0.363636;ABP=4.78696;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=32;DPB=32;DPRA=1.57143;EPP=11.6962;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=155;QR=1067;RO=28;RPL=0;RPP=11.6962;RPPR=63.8115;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:7,4:7:272:4:155:-11.0141,0,-21.5359 0/0:8:8,0:8:303:0:0:0,-2.40824,-27.6277 0/0:11:11,0:11:415:0:0:0,-3.31133,-37.6976 0/0:2:2,0:2:77:0:0:0,-0.60206,-7.30914 dDocent_Contig_16583 12 . A G 507.853 . AB=0.34375;ABP=9.79615;AC=4;AF=0.5;AN=8;AO=15;CIGAR=1M1D2M1X5M;DP=45;DPB=42.4;DPRA=0;EPP=35.5824;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=579;QR=746;RO=19;RPL=0;RPP=35.5824;RPPR=44.2683;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:28:12,9,7:12:472:9,7:352,265:-25.3347,0,-36.1269,-7.22792,-17.1169,-43.9488 0|0:9:7,0,2:7:274:0,2:0,77:-4.59987,-6.70708,-29.241,0,-22.9201,-22.318 1|0:4:0,2,2:0:0:2,2:80,70:-12.6604,-6.04534,-5.44328,-6.98973,0,-6.38767 1|1:4:0,4,0:0:0:4,0:147,0:-13.5878,-1.20412,0,-13.5878,-1.20412,-13.5878 dDocent_Contig_16585 98 . N T 65.5375 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=69;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:69:-6.55266,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_16586 25 . T A 174.487 . AB=0.230769;ABP=27.5646;AC=3;AF=0.5;AN=6;AO=9;CIGAR=1X;DP=39;DPB=39;DPRA=0;EPP=22.5536;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=358;QR=1193;RO=30;RPL=0;RPP=22.5536;RPPR=68.1545;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:12,2:12:479:2:81:-3.47131,0,-39.2456 0/1:14:8,6:8:313:6:237:-17.4885,0,-24.3192 0/1:11:10,1:10:401:1:40:-0.684349,0,-33.1386 ./.:.:.:.:.:.:.:. dDocent_Contig_16587 11 . G T 464.238 . AB=0.253012;ABP=46.9892;AC=3;AF=0.375;AN=8;AO=24;CIGAR=1X;DP=124;DPB=124;DPRA=0;EPP=55.1256;EPPR=220.158;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=963;QR=3943;RO=100;RPL=0;RPP=55.1256;RPPR=220.158;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=100;SRP=220.158;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:39:35,4:35:1377:4:163:-3.31826,0,-112.443 0/0:41:38,3:38:1518:3:122:0,-0.969737,-125.49 0/1:31:18,13:18:692:13:519:-37.7198,0,-53.2702 0/1:13:9,4:9:356:4:159:-10.7784,0,-28.4863 dDocent_Contig_16589 83 . G A 347.403 . AB=0.424242;ABP=4.65535;AC=2;AF=0.333333;AN=6;AO=14;CIGAR=1X;DP=41;DPB=41;DPRA=2.0625;EPP=33.4109;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=513;QR=986;RO=27;RPL=14;RPP=33.4109;RPPR=61.6401;RPR=0;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 0/0:8:8,0:8:292:0:0:0,-2.40824,-26.6307 0/1:23:18,5:18:657:5:184:-9.99473,0,-52.5382 0/1:10:1,9:1:37:9:329:-26.949,0,-0.687529 dDocent_Contig_16591 20 . T C 1145.01 . AB=0.116279;ABP=58.0041;AC=4;AF=0.5;AN=8;AO=5;CIGAR=1X4M;DP=133;DPB=133;DPRA=0;EPP=13.8677;EPPR=181.071;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=190;QR=3225;RO=82;RPL=0;RPP=13.8677;RPPR=181.071;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=82;SRP=181.071;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:36:25,11,0:25:959:11,0:430,0:-28.2162,0,-75.775,-35.742,-79.0863,-114.44 0|1:39:19,20,0:19:760:20,0:766,0:-57.522,0,-56.9841,-63.2415,-63.0047,-125.855 0|1:43:25,13,5:25:990:13,5:496,190:-33.167,0,-77.5813,-25.1122,-65.9163,-105.098 0|1:15:13,2,0:13:516:2,0:79,0:-2.98218,0,-42.2716,-6.89557,-42.8736,-49.3743 dDocent_Contig_16592 106 . N C 236.013 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=7;CIGAR=2X;DP=7;DPB=7;DPRA=0;EPP=18.2106;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=244;QR=0;RO=0;RPL=0;RPP=18.2106;RPPR=0;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:4:0,4:0:0:4:139:-12.8524,-1.20412,0 1|1:1:0,1:0:0:1:35:-3.49863,-0.30103,0 1|1:2:0,2:0:0:2:70:-6.64733,-0.60206,0 .:.:.:.:.:.:.:. dDocent_Contig_16593 74 . A G 759.3 . AB=0.6;ABP=8.22183;AC=4;AF=0.5;AN=8;AO=36;CIGAR=1X;DP=60;DPB=60;DPRA=0;EPP=64.7766;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.888889;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1104;QR=768;RO=24;RPL=36;RPP=81.1833;RPPR=55.1256;RPR=0;RUN=1;SAF=34;SAP=64.7766;SAR=2;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:2,7:2:68:7:192:-14.8426,0,-3.74861 0/1:14:2,12:2:57:12:393:-31.472,0,-1.19965 0/1:29:14,15:14:453:15:453:-32.3328,0,-32.3524 0/1:8:6,2:6:190:2:66:-3.86012,0,-15.0046 dDocent_Contig_16597 79 . A C 1952.61 . AB=0.767123;ABP=48.2543;AC=5;AF=0.625;AN=8;AO=69;CIGAR=1X;DP=87;DPB=87;DPRA=0;EPP=152.842;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.956522;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2500;QR=664;RO=18;RPL=69;RPP=152.842;RPPR=42.0968;RPR=0;RUN=1;SAF=69;SAP=152.842;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:14:1,13:1:37:13:468:-38.7599,-0.516591,0 0/1:53:10,43:10:368:43:1555:-124.28,0,-17.5144 0/1:9:2,7:2:74:7:257:-20.7747,0,-4.31661 0/1:11:5,6:5:185:6:220:-16.8441,0,-13.6987 dDocent_Contig_16598 45 . T A 336.652 . AB=0.166667;ABP=124.613;AC=3;AF=0.375;AN=8;AO=21;CIGAR=1X;DP=177;DPB=177;DPRA=0.823529;EPP=48.6112;EPPR=341.76;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=826;QR=6027;RO=156;RPL=0;RPP=48.6112;RPPR=341.76;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=156;SRP=341.76;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:51:51,0:51:2014:0:0:0,-15.3525,-181.466 0/1:87:70,17:70:2690:17:667:-34.1708,0,-216.064 0/1:27:24,3:24:897:3:118:-2.87491,0,-72.904 0/1:12:11,1:11:426:1:41:-0.482207,0,-35.077 dDocent_Contig_16600 59 . A G 730.535 . AB=0.432836;ABP=5.63551;AC=4;AF=0.5;AN=8;AO=29;CIGAR=1X;DP=67;DPB=67;DPRA=0;EPP=65.983;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1102;QR=1453;RO=38;RPL=29;RPP=65.983;RPPR=85.5263;RPR=0;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:9,8:9:350:8:308:-22.9646,0,-26.7438 0/1:23:13,10:13:491:10:389:-28.4447,0,-37.6108 0/1:20:12,8:12:464:8:290:-20.4245,0,-36.0909 0/1:7:4,3:4:148:3:115:-8.61768,0,-11.5733 dDocent_Contig_16601 53 . A G 1939.36 . AB=0.0842105;ABP=145.665;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1M7D1X15M;DP=258;DPB=264;DPRA=0;EPP=20.3821;EPPR=109.412;GTI=0;LEN=1;MEANALT=16;MQM=60;MQMR=60;NS=4;NUMALT=6;ODDS=5.55112e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=326;QR=1654;RO=49;RPL=8;RPP=20.3821;RPPR=109.412;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:99:26,0,3,12,8,17,4:26:893:0,3,12,8,17,4:0,28,478,321,657,156:-46.1649,-53.9917,-126.526,-52.3821,-124.915,-124.012,-14.6045,-87.1497,-85.5391,-83.5373,-27.5257,-100.067,-98.4561,-60.6873,-97.6585,0,-72.5505,-70.9401,-33.1667,-46.0866,-67.433,-41.1617,-113.699,-112.088,-74.3212,-87.2388,-59.7214,-112.495 0|0:59:8,1,1,7,17,7,0:8:261:1,1,7,17,7,0:41,7,268,660,270,0:-52.9641,-51.9862,-72.764,-55.0481,-72.7402,-75.825,-33.37,-51.0646,-54.1264,-52.3437,-1.10521,-18.8057,-21.8691,-0.181531,-17.0756,-33.1886,-50.8833,-53.945,-32.2664,0,-52.1624,-55.3724,-73.065,-76.126,-54.4509,-22.1932,-54.2696,-76.4509 0|0:64:9,0,4,2,21,5,6:9:305:0,4,2,21,5,6:0,31,80,836,193,235:-66.1894,-68.8987,-93.637,-67.3297,-92.0658,-90.8617,-62.3045,-87.0435,-85.4727,-86.4415,0,-24.7551,-23.1869,-18.1576,-18.4334,-53.0398,-77.78,-76.2097,-71.186,-8.88768,-76.2748,-49.5634,-74.3042,-72.7341,-67.7101,-5.40909,-58.4456,-72.4981 1|0:36:6,7,0,2,4,9,2:6:195:7,0,2,4,9,2:285,0,81,155,363,80:-35.9416,-14.2185,-27.8501,-37.7478,-29.9573,-53.4834,-31.0643,-23.2723,-46.8005,-46.1985,-25.0082,-17.2145,-40.7447,-34.061,-39.5406,-7.80028,0,-23.5404,-16.8545,-10.7959,-20.8311,-31.1539,-23.3619,-46.89,-40.2067,-34.1505,-16.9441,-46.288 dDocent_Contig_16602 11 . G A 170.565 . AB=0.545455;ABP=3.20771;AC=1;AF=0.125;AN=8;AO=6;CIGAR=2X;DP=39;DPB=39;DPRA=1.17857;EPP=16.0391;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.333333;PAIREDR=0.969697;PAO=0;PQA=0;PQR=0;PRO=0;QA=241;QR=1304;RO=33;RPL=0;RPP=16.0391;RPPR=74.6689;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:4:4,0:4:154:0:0:0,-1.20412,-14.2329 0|1:11:5,6:5:203:6:241:-18.7553,0,-15.3417 0|0:17:17,0:17:673:0:0:0,-5.11751,-60.8963 0|0:7:7,0:7:274:0:0:0,-2.10721,-25.0259 dDocent_Contig_16603 165 . A G 63.8092 . AB=0.0833333;ABP=21.1059;AC=3;AF=0.375;AN=8;AO=3;CIGAR=1X;DP=25;DPB=25;DPRA=1.27273;EPP=9.52472;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=105;QR=880;RO=22;RPL=3;RPP=9.52472;RPPR=50.7827;RPR=0;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=50.7827;SRR=22;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:11,1:11:449:1:41:-0.482207,0,-37.1535 0/0:10:10,0:10:390:0:0:0,-3.0103,-35.4479 1/1:2:0,2:0:0:2:64:-6.07579,-0.60206,0 0/0:1:1,0:1:41:0:0:0,-0.30103,-4.09457 dDocent_Contig_16605 13 . T C 524.364 . AB=0.304348;ABP=18.305;AC=4;AF=0.5;AN=8;AO=14;CIGAR=1X3M;DP=57;DPB=57;DPRA=1.39394;EPP=33.4109;EPPR=70.3259;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.428571;PAIREDR=0.709677;PAO=0;PQA=0;PQR=0;PRO=0;QA=571;QR=1222;RO=31;RPL=0;RPP=33.4109;RPPR=70.3259;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:20:14,5,1:14:552:5,1:203,41:-12.5247,0,-43.8922,-13.3544,-42.0122,-58.4566 0|0:11:10,0,0:10:399:0,0:0,0:0,-3.0103,-35.8583,-3.0103,-35.8583,-35.8583 0|1:15:6,4,5:6:233:4,5:155,202:-14.8561,-3.93737,-21.8678,0,-6.41162,-17.6384 1|1:11:1,2,8:1:38:2,8:82,328:-30.453,-23.9859,-26.497,-3.68138,0,-4.37974 dDocent_Contig_16606 9 . T A 768.061 . AB=0.446154;ABP=4.64726;AC=2;AF=0.25;AN=8;AO=29;CIGAR=1X;DP=76;DPB=76;DPRA=5.90909;EPP=65.983;EPPR=96.5684;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=58.8723;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.978723;PAO=0;PQA=0;PQR=0;PRO=0;QA=1101;QR=1781;RO=47;RPL=0;RPP=65.983;RPPR=105.07;RPR=29;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=46;SRP=96.5684;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:14,11:14:509:11:409:-29.6306,0,-38.6121 0/1:40:22,18:22:844:18:692:-50.5734,0,-64.2403 0/0:7:7,0:7:272:0:0:0,-2.10721,-21.8337 0/0:4:4,0:4:156:0:0:0,-1.20412,-14.4173 dDocent_Contig_16607 93 . G A 122.508 . AB=0.212766;ABP=36.6912;AC=2;AF=0.25;AN=8;AO=10;CIGAR=1X;DP=125;DPB=125;DPRA=0.602564;EPP=24.725;EPPR=252.73;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.991304;PAO=0;PQA=0;PQR=0;PRO=0;QA=324;QR=3922;RO=115;RPL=10;RPP=24.725;RPPR=252.73;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=115;SRP=252.73;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:43:43,0:43:1472:0:0:0,-12.9443,-132.774 0/0:35:35,0:35:1203:0:0:0,-10.536,-108.575 0/1:31:26,5:26:874:5:174:-6.67002,0,-69.6382 0/1:16:11,5:11:373:5:150:-8.97873,0,-29.0813 dDocent_Contig_16608 22 . C A 2734.04 . AB=0.0571429;ABP=62.6327;AC=0;AF=0;AN=8;AO=2;CIGAR=2X11M;DP=131;DPB=131.154;DPRA=3.5;EPP=7.35324;EPPR=46.4397;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=4;NUMALT=5;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=79;QR=777;RO=20;RPL=0;RPP=7.35324;RPPR=46.4397;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:42:13,0,10,2,0,17:13:504:0,10,2,0,17:0,399,82,0,676:-51.6954,-55.6088,-97.0088,-22.7471,-64.1461,-61.1358,-48.8398,-90.24,-57.3769,-89.6379,-55.6088,-97.0088,-64.1461,-90.24,-97.0088,0,-41.3967,-8.53173,-34.6271,-41.3967,-36.2792 0|0:35:0,2,0,13,2,18:0:0:2,0,13,2,18:78,0,473,79,726:-98.4404,-92.0286,-91.4265,-98.4404,-92.0286,-98.4404,-59.8383,-53.4278,-59.8383,-55.9249,-91.9393,-85.5275,-91.9393,-53.3383,-91.3372,-38.594,-32.1799,-38.594,0,-32.0902,-33.1755 0|0:44:7,0,0,5,0,31:7:273:0,0,5,0,31:0,0,189,0,1192:-95.7688,-97.8761,-120.319,-97.8761,-120.319,-120.319,-82.3871,-104.83,-104.83,-103.325,-97.8761,-120.319,-120.319,-104.83,-120.319,0,-22.4751,-22.4751,-6.97546,-22.4751,-13.1432 0|0:10:0,0,0,0,0,9:0:0:0,0,0,0,9:0,0,0,0,366:-32.8974,-32.8974,-32.8974,-32.8974,-32.8974,-32.8974,-32.8974,-32.8974,-32.8974,-32.8974,-32.8974,-32.8974,-32.8974,-32.8974,-32.8974,-2.70927,-2.70927,-2.70927,-2.70927,-2.70927,0 dDocent_Contig_16609 153 . A G 46.4112 . AB=0.16;ABP=28.1125;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=78;DPB=78;DPRA=1.41509;EPP=11.6962;EPPR=163.699;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.189189;PAO=0;PQA=0;PQR=0;PRO=0;QA=150;QR=2704;RO=74;RPL=0;RPP=11.6962;RPPR=163.699;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=163.699;SRR=74;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:26:26,0:26:959:0:0:0,-7.82678,-86.6214 0/0:22:22,0:22:782:0:0:0,-6.62266,-70.6988 0/1:25:21,4:21:768:4:150:-6.34005,0,-61.9195 0/0:5:5,0:5:195:0:0:0,-1.50515,-17.9235 dDocent_Contig_16611 55 . G T 180.756 . AB=0.1875;ABP=16.582;AC=6;AF=0.75;AN=8;AO=7;CIGAR=1X;DP=20;DPB=20;DPRA=0;EPP=18.2106;EPPR=31.2394;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=273;QR=528;RO=13;RPL=7;RPP=18.2106;RPPR=31.2394;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=13;SRP=31.2394;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:120:-11.1877,-0.90309,0 0/1:7:6,1:6:243:1:40:-1.88847,0,-20.141 0/1:9:7,2:7:285:2:75:-4.41083,0,-23.3151 1/1:1:0,1:0:0:1:38:-3.79727,-0.30103,0 dDocent_Contig_16612 24 . G A 290.845 . AB=0.214286;ABP=42.7172;AC=1;AF=0.125;AN=8;AO=13;CIGAR=2M1X3M;DP=93;DPB=91.1667;DPRA=0;EPP=31.2394;EPPR=152.842;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=520;QR=2702;RO=69;RPL=0;RPP=31.2394;RPPR=152.842;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=69;SRP=152.842;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:28:17,6,5:17:676:6,5:242,201:-14.8207,0,-53.8487,-3.37484,-39.0901,-57.5239 0|0:37:35,1,1:35:1363:1,1:36,41:0,-7.62345,-119.313,-7.12715,-116.229,-118.865 0|1:16:7,3,6:7:273:3,6:122,240:-17.6583,-9.70007,-31.2317,0,-12.3603,-20.6223 0|0:12:10,1,1:10:390:1,1:40,38:-0.294702,0,-31.7628,-0.19841,-28.9482,-31.9431 dDocent_Contig_16613 175 . C T 39.0738 . AB=0.176471;ABP=18.4661;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=39;DPB=39;DPRA=2.31818;EPP=9.52472;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=115;QR=1377;RO=36;RPL=3;RPP=9.52472;RPPR=81.1833;RPR=0;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=81.1833;SRR=36;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:6:6,0:6:242:0:0:0,-1.80618,-22.1569 0/1:17:14,3:14:513:3:115:-5.60627,0,-41.3659 0/0:9:9,0:9:336:0:0:0,-2.70927,-30.5781 0/0:7:7,0:7:286:0:0:0,-2.10721,-26.1148 dDocent_Contig_16614 29 . C T 138.588 . AB=0.212121;ABP=26.7649;AC=2;AF=0.25;AN=8;AO=9;CIGAR=1X;DP=83;DPB=83;DPRA=0;EPP=22.5536;EPPR=163.699;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.513514;PAO=0;PQA=0;PQR=0;PRO=0;QA=365;QR=2965;RO=74;RPL=0;RPP=22.5536;RPPR=163.699;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=74;SRP=163.699;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:26:25,1:25:1002:1:41:0,-3.73221,-86.3823 0/0:24:23,1:23:936:1:41:0,-3.13015,-80.4459 0/1:23:21,2:21:826:2:81:-0.762044,0,-67.7293 0/1:10:5,5:5:201:5:202:-15.5516,0,-15.4606 dDocent_Contig_16615 25 . T A 131.801 . AB=0.421053;ABP=4.03889;AC=4;AF=0.5;AN=8;AO=11;CIGAR=1X;DP=28;DPB=28;DPRA=1.22222;EPP=26.8965;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=25.0909;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.272727;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=426;QR=682;RO=17;RPL=0;RPP=26.8965;RPPR=39.9253;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:114:-6.80219,-0.90309,0 0/0:6:6,0:6:239:0:0:0,-1.80618,-21.8844 0/1:16:9,7:9:361:7:271:-6.58036,0,-28.0372 0/1:3:2,1:2:82:1:41:-3.18833,0,-6.87659 dDocent_Contig_16616 12 . C A 458.472 . AB=0.157895;ABP=22.325;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X1M1I9M;DP=47;DPB=49.0909;DPRA=6.33333;EPP=9.52472;EPPR=52.9542;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=120;QR=902;RO=23;RPL=0;RPP=9.52472;RPPR=52.9542;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:19:2,3,0,13:2:79:3,0,13:120,0,487:-42.6491,-33.3617,-38.9619,-43.2511,-39.865,-49.7536,-3.38759,0,-9.8869,-5.97351 0|0:16:10,0,3,3:10:395:0,3,3:0,114,116:-6.52112,-9.53142,-42.0435,-0.185728,-32.6969,-31.7938,0,-32.5163,-23.1707,-31.6132 0|0:9:8,0,0,1:8:308:0,0,1:0,0,37:-0.988559,-3.3968,-28.6964,-3.3968,-28.6964,-28.6964,0,-25.6711,-25.6711,-25.3701 0|0:3:3,0,0,0:3:120:0,0,0:0,0,0:0,-0.90309,-11.1879,-0.90309,-11.1879,-11.1879,-0.90309,-11.1879,-11.1879,-11.1879 dDocent_Contig_16617 12 . C G 79.7475 . AB=0;ABP=0;AC=2;AF=0.333333;AN=6;AO=2;CIGAR=1X;DP=17;DPB=17;DPRA=0.266667;EPP=7.35324;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.69407e-21;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=79;QR=588;RO=15;RPL=0;RPP=7.35324;RPPR=35.5824;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=15;SRP=35.5824;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:79:-7.49724,-0.60206,0 0/0:9:9,0:9:362:0:0:0,-2.70927,-32.9436 ./.:.:.:.:.:.:.:. 0/0:6:6,0:6:226:0:0:0,-1.80618,-20.6981 dDocent_Contig_16618 26 . C T 125.983 . AB=0.25;ABP=16.0391;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=58;DPB=58;DPRA=2.11765;EPP=16.0391;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=235;QR=2084;RO=52;RPL=0;RPP=16.0391;RPPR=115.927;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:25:25,0:25:1004:0:0:0,-7.52575,-90.6569 0/1:24:18,6:18:726:6:235:-14.2971,0,-58.4405 0/0:6:6,0:6:231:0:0:0,-1.80618,-21.1509 0/0:3:3,0:3:123:0:0:0,-0.90309,-11.4648 dDocent_Contig_16619 98 . N T 530.887 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=18;CIGAR=2X;DP=18;DPB=18;DPRA=0;EPP=42.0968;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=569;QR=0;RO=0;RPL=18;RPP=42.0968;RPPR=0;RPR=0;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:3:0,3:0:0:3:95:-8.86474,-0.90309,0 1|1:10:0,10:0:0:10:317:-28.8402,-3.0103,0 1|1:4:0,4:0:0:4:122:-11.2823,-1.20412,0 1|1:1:0,1:0:0:1:35:-3.49863,-0.30103,0 dDocent_Contig_16621 68 . C T 558.743 . AB=0.428571;ABP=5.18177;AC=2;AF=0.25;AN=8;AO=21;CIGAR=2X;DP=55;DPB=55;DPRA=8.16667;EPP=48.6112;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=57.7143;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=827;QR=1357;RO=34;RPL=21;RPP=48.6112;RPPR=76.8404;RPR=0;RUN=1;SAF=0;SAP=48.6112;SAR=21;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:3:3,0:3:112:0:0:0,-0.90309,-10.4428 0|0:3:3,0:3:117:0:0:0,-0.90309,-10.9099 0|1:25:13,12:13:515:12:468:-33.8233,0,-39.17 0|1:24:15,9:15:613:9:359:-25.4487,0,-48.2821 dDocent_Contig_16622 129 . A T 1347.52 . AB=0.485149;ABP=3.2038;AC=3;AF=0.375;AN=8;AO=49;CIGAR=1X;DP=102;DPB=102;DPRA=33.6667;EPP=109.412;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1884;QR=2094;RO=53;RPL=0;RPP=109.412;RPPR=118.098;RPR=49;RUN=1;SAF=0;SAP=109.412;SAR=49;SRF=0;SRP=118.098;SRR=53;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:49:18,31:18:697:31:1182:-91.9023,0,-48.2958 0/1:45:31,14:31:1234:14:542:-35.5708,0,-97.7828 0/1:7:3,4:3:122:4:160:-12.6762,0,-9.26528 0/0:1:1,0:1:41:0:0:0,-0.30103,-4.09457 dDocent_Contig_16623 111 . T A 99.3061 . AB=0.384615;ABP=4.51363;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=59;DPB=59;DPRA=0.847826;EPP=13.8677;EPPR=120.27;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=169;QR=1792;RO=54;RPL=0;RPP=13.8677;RPPR=120.27;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=120.27;SRR=54;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:16:16,0:16:553:0:0:0,-4.81648,-50.0975 0/0:24:24,0:24:758:0:0:0,-7.22472,-68.5137 0/1:13:8,5:8:275:5:169:-11.6296,0,-21.1714 0/0:6:6,0:6:206:0:0:0,-1.80618,-18.8767 dDocent_Contig_16624 16 . A G 891.156 . AB=0.414634;ABP=8.20065;AC=4;AF=0.5;AN=8;AO=34;CIGAR=1X;DP=82;DPB=82;DPRA=0;EPP=76.8404;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1330;QR=1879;RO=48;RPL=0;RPP=76.8404;RPPR=107.241;RPR=34;RUN=1;SAF=34;SAP=76.8404;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:40:28,12:28:1096:12:474:-30.9701,0,-86.8953 0/1:30:11,19:11:427:19:736:-57.5347,0,-29.7517 0/1:7:5,2:5:193:2:80:-5.48436,0,-15.6328 0/1:5:4,1:4:163:1:40:-2.49053,0,-13.5533 dDocent_Contig_16625 79 . A G 306.604 . AB=0.419355;ABP=4.76149;AC=3;AF=0.375;AN=8;AO=13;CIGAR=1X;DP=38;DPB=38;DPRA=1.47619;EPP=31.2394;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=492;QR=927;RO=25;RPL=13;RPP=31.2394;RPPR=57.2971;RPR=0;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:7,2:7:267:2:74:-4.31559,0,-21.6733 0/0:7:7,0:7:279:0:0:0,-2.10721,-25.4802 0/1:19:10,9:10:343:9:340:-25.2289,0,-25.4696 0/1:3:1,2:1:38:2:78:-6.49969,0,-2.89418 dDocent_Contig_16626 146 . G A 114.673 . AB=0.1;ABP=16.9077;AC=3;AF=0.5;AN=6;AO=4;CIGAR=1X;DP=33;DPB=33;DPRA=0.325;EPP=11.6962;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=160;QR=1171;RO=29;RPL=0;RPP=11.6962;RPPR=65.983;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=65.983;SRR=29;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:20:20,0:20:809:0:0:0,-6.0206,-73.1262 ./.:.:.:.:.:.:.:. 0/1:10:9,1:9:362:1:39:-0.886264,0,-29.9337 1/1:3:0,3:0:0:3:121:-11.28,-0.90309,0 dDocent_Contig_16627 20 . G A 118.756 . AB=0.235294;ABP=23.7032;AC=0;AF=0;AN=8;AO=9;CIGAR=2X1M1X2M2X1M1X2M1X3M;DP=54;DPB=53.5625;DPRA=0;EPP=22.5536;EPPR=81.1833;GTI=0;LEN=1;MEANALT=2.33333;MQM=9;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=1390;RO=36;RPL=0;RPP=22.5536;RPPR=81.1833;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:19:12,4,3:12:469:4,3:36,123:-6.68848,-9.44516,-46.7811,0,-37.8292,-37.898 0|0:15:13,1,0:13:490:1,0:9,0:0,-3.65857,-43.7827,-3.91339,-44.0838,-44.3277 0|0:15:7,4,3:7:272:4,3:36,121:-7.96858,-9.19287,-30.3298,0,-21.5565,-21.5978 0|0:5:4,0,1:4:159:0,1:0,41:-2.58942,-3.79354,-16.8748,0,-13.4882,-13.1872 dDocent_Contig_16629 97 . T C 83.4384 . AB=0.444444;ABP=3.25157;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=23;DPB=23;DPRA=1.28571;EPP=11.6962;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=136;QR=620;RO=19;RPL=4;RPP=11.6962;RPPR=44.2683;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 0/1:9:5,4:5:164:4:136:-9.8667,0,-12.3747 0/0:7:7,0:7:222:0:0:0,-2.10721,-20.2914 0/0:7:7,0:7:234:0:0:0,-2.10721,-21.3877 dDocent_Contig_16630 11 . C T 93.8049 . AB=0.119658;ABP=150.021;AC=4;AF=0.5;AN=8;AO=14;CIGAR=1X;DP=117;DPB=117;DPRA=0;EPP=33.4109;EPPR=226.672;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.6214;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=555;QR=4057;RO=103;RPL=0;RPP=33.4109;RPPR=226.672;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=103;SRP=226.672;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:47:41,6:41:1618:6:232:-7.09888,0,-131.701 0/1:33:30,3:30:1178:3:123:-1.5308,0,-96.3531 0/1:24:21,3:21:822:3:120:-3.96259,0,-65.5184 0/1:13:11,2:11:439:2:80:-3.6784,0,-35.9485 dDocent_Contig_16631 162 . G C 419.102 . AB=0.357143;ABP=7.97367;AC=4;AF=0.666666;AN=6;AO=10;CIGAR=1X1M;DP=33;DPB=33;DPRA=2.8;EPP=24.725;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=394;QR=712;RO=18;RPL=10;RPP=24.725;RPPR=42.0968;RPR=0;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=42.0968;SRR=18;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:5:0,5,0:0:0:5,0:192,0:-17.6478,-1.50515,0,-17.6478,-1.50515,-17.6478 0|1:14:11,0,3:11:435:0,3:0,121:-7.06578,-10.3771,-46.168,0,-36.1921,-35.289 0|1:14:7,0,7:7:277:0,7:0,273:-20.7193,-22.8266,-45.6263,0,-23.1922,-21.085 .:.:.:.:.:.:.:. dDocent_Contig_16633 66 . G A 36.7916 . AB=0.333333;ABP=4.45795;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=27;DPB=27;DPRA=0.571429;EPP=7.35324;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=77;QR=963;RO=25;RPL=2;RPP=7.35324;RPPR=57.2971;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:7:7,0:7:270:0:0:0,-2.10721,-24.6578 0/0:14:14,0:14:544:0:0:0,-4.21442,-49.301 0/1:6:4,2:4:149:2:77:-5.50296,0,-11.963 ./.:.:.:.:.:.:.:. dDocent_Contig_16634 109 . C T 42.8368 . AB=0.197674;ABP=71.2854;AC=2;AF=0.25;AN=8;AO=25;CIGAR=1X;DP=202;DPB=202;DPRA=0;EPP=57.2971;EPPR=387.361;GTI=0;LEN=1;MEANALT=1;MQM=26.08;MQMR=13.7119;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=0;PAIREDR=0.118644;PAO=0;PQA=0;PQR=0;PRO=0;QA=848;QR=6063;RO=177;RPL=0;RPP=57.2971;RPPR=387.361;RPR=25;RUN=1;SAF=0;SAP=57.2971;SAR=25;SRF=0;SRP=387.361;SRR=177;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:53:47,6:47:1586:6:198:0,-0.896652,-18.4827 0/1:60:47,13:47:1624:13:451:-4.90999,0,-54.7294 0/0:63:61,2:61:2116:2:71:0,-13.2619,-63.2239 0/1:26:22,4:22:737:4:128:-2.75257,0,-8.00741 dDocent_Contig_16636 59 . C T 82.2816 . AB=0.162162;ABP=39.6906;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=86;DPB=86;DPRA=2.26531;EPP=16.0391;EPPR=176.728;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.475;PAO=0;PQA=0;PQR=0;PRO=0;QA=230;QR=3104;RO=80;RPL=6;RPP=16.0391;RPPR=176.728;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=80;SRP=176.728;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:11,0:11:432:0:0:0,-3.31133,-39.231 0/1:37:31,6:31:1181:6:230:-9.92713,0,-95.4369 0/0:21:21,0:21:815:0:0:0,-6.32163,-73.6633 0/0:17:17,0:17:676:0:0:0,-5.11751,-61.1732 dDocent_Contig_16638 178 . T A 67.7072 . AB=0.333333;ABP=5.18177;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=25;DPB=25;DPRA=3.66667;EPP=11.6962;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=156;QR=823;RO=21;RPL=4;RPP=11.6962;RPPR=48.6112;RPR=0;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=48.6112;SRR=21;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:6,3:6:242:3:118:-8.29231,0,-19.4477 0/0:13:12,1:12:462:1:38:0,-0.116121,-38.1208 0/0:3:3,0:3:119:0:0:0,-0.90309,-11.095 ./.:.:.:.:.:.:.:. dDocent_Contig_16639 7 . A C 215.892 . AB=0.0689655;ABP=49.8093;AC=0;AF=0;AN=8;AO=2;CIGAR=1X3M1X;DP=68;DPB=68;DPRA=4.83333;EPP=7.35324;EPPR=118.098;GTI=0;LEN=1;MEANALT=2;MQM=44;MQMR=59.5094;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.981132;PAO=0;PQA=0;PQR=0;PRO=0;QA=78;QR=2025;RO=53;RPL=0;RPP=7.35324;RPPR=118.098;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:27:20,7,0:20:769:7,0:272,0:-15.9934,0,-61.4103,-22.014,-63.5176,-85.1528 0|0:29:23,4,2:23:878:4,2:157,78:-5.54644,0,-70.8331,-6.26754,-65.8343,-77.701 0|0:6:6,0,0:6:230:0,0:0,0:0,-1.80618,-20.6322,-1.80618,-20.6322,-20.6322 0|0:6:4,2,0:4:148:2,0:79,0:-5.44722,0,-11.8738,-6.65134,-12.4758,-18.7494 dDocent_Contig_16640 15 . T C 1272.03 . AB=0.1875;ABP=30.1537;AC=0;AF=0;AN=8;AO=6;CIGAR=1X2M1X2M1X;DP=77;DPB=77;DPRA=4.57143;EPP=16.0391;EPPR=65.983;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.931034;PAO=0;PQA=0;PQR=0;PRO=0;QA=238;QR=1133;RO=29;RPL=0;RPP=16.0391;RPPR=65.983;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:26:10,0,16:10:386:0,16:0,635:-49.6567,-52.667,-84.36,0,-32.0828,-27.2663 0|0:32:13,6,13:13:507:6,13:238,521:-39.0126,-23.3359,-63.198,0,-22.0757,-37.7557 0|0:12:6,0,6:6:240:0,6:0,237:-18.089,-19.8951,-39.6679,0,-20.1698,-18.3637 0|0:7:0,0,7:0:0:0,7:0,283:-25.8425,-25.8425,-25.8425,-2.10721,-2.10721,0 dDocent_Contig_16641 137 . A C 162.933 . AB=0.6;ABP=3.87889;AC=1;AF=0.125;AN=8;AO=6;CIGAR=2X;DP=42;DPB=42;DPRA=0.9375;EPP=16.0391;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=226;QR=1311;RO=36;RPL=0;RPP=16.0391;RPPR=81.1833;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=81.1833;SRR=36;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:10:4,6:4:131:6:226:-17.6913,0,-9.10011 0|0:13:13,0:13:475:0:0:0,-3.91339,-43.0882 0|0:13:13,0:13:482:0:0:0,-3.91339,-43.7237 0|0:6:6,0:6:223:0:0:0,-1.80618,-20.4287 dDocent_Contig_16642 107 . N T 128.53 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=7.37776;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=139;QR=0;RO=0;RPL=0;RPP=11.6962;RPPR=0;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:4:0,4:0:0:4:139:-12.8527,-1.20412,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_16644 7 . A C 114.875 . AB=0.285714;ABP=11.386;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=26;DPB=26;DPRA=2.1;EPP=16.0391;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=46;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=233;QR=769;RO=20;RPL=0;RPP=16.0391;RPPR=46.4397;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5,0:5:194:0:0:0,-1.50515,-17.8328 0/1:7:3,4:3:114:4:155:-11.952,0,-8.52501 0/1:14:12,2:12:461:2:78:-3.04548,0,-37.6253 ./.:.:.:.:.:.:.:. dDocent_Contig_16645 48 . G A 194.819 . AB=0.363636;ABP=6.56362;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=55;DPB=55;DPRA=2;EPP=20.3821;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=305;QR=1852;RO=47;RPL=0;RPP=20.3821;RPPR=105.07;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:26:26,0:26:1031:0:0:0,-7.82678,-93.0861 0/1:22:14,8:14:545:8:305:-21.1807,0,-42.7662 0/0:4:4,0:4:159:0:0:0,-1.20412,-14.6917 0/0:3:3,0:3:117:0:0:0,-0.90309,-10.9093 dDocent_Contig_16646 153 . T A 151.432 . AB=0;ABP=0;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=2X;DP=19;DPB=19;DPRA=0.533333;EPP=11.6962;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.69407e-21;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=162;QR=602;RO=15;RPL=0;RPP=11.6962;RPPR=35.5824;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=35.5824;SRR=15;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:9:9,0:9:363:0:0:0,-2.70927,-33.0344 .:.:.:.:.:.:.:. 1|1:4:0,4:0:0:4:162:-14.967,-1.20412,0 0|0:6:6,0:6:239:0:0:0,-1.80618,-21.885 dDocent_Contig_16648 32 . C T 445.859 . AB=0.2;ABP=6.91895;AC=3;AF=0.375;AN=8;AO=4;CIGAR=1M2I2M1X3M1X3M5I14M;DP=49;DPB=49.8;DPRA=0;EPP=11.6962;EPPR=52.9542;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=4;NUMALT=4;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=156;QR=852;RO=23;RPL=0;RPP=11.6962;RPPR=52.9542;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:17:10,0,7,0,0:10:370:0,7,0,0:0,273,0,0:-19.8195,-22.8298,-53.0868,0,-30.6385,-28.5312,-22.8298,-53.0868,-30.6385,-53.0868,-22.8298,-53.0868,-30.6385,-53.0868,-53.0868 1|1:3:0,3,0,0,0:0:0:3,0,0,0:117,0,0,0:-10.9104,-0.90309,0,-10.9104,-0.90309,-10.9104,-10.9104,-0.90309,-10.9104,-10.9104,-10.9104,-0.90309,-10.9104,-10.9104,-10.9104 0|0:24:13,0,0,5,4:13:482:0,0,5,4:0,0,199,153:-12.5037,-16.417,-55.8627,-16.417,-55.8627,-55.8627,0,-39.4681,-39.4681,-37.963,-3.85029,-43.305,-43.305,-26.9072,-42.1009 1|0:5:0,1,1,1,1:0:0:1,1,1,1:39,39,38,37:-6.45702,-3.23417,-2.93314,-3.23417,0,-2.93314,-3.32601,-0.0926758,-0.0926758,-3.02498,-3.418,-0.185486,-0.185486,-0.278162,-3.11697 dDocent_Contig_16649 95 . C A 221.536 . AB=0.392857;ABP=5.80219;AC=2;AF=0.25;AN=8;AO=11;CIGAR=1X;DP=52;DPB=52;DPRA=1.16667;EPP=26.8965;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=347;QR=1412;RO=41;RPL=11;RPP=26.8965;RPPR=92.0407;RPR=0;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:21:21,0:21:722:0:0:0,-6.32163,-65.3007 0/1:18:16,2:16:552:2:70:-1.22886,0,-44.5885 0/1:10:1,9:1:34:9:277:-22.2205,0,-0.388611 0/0:3:3,0:3:104:0:0:0,-0.90309,-9.70309 dDocent_Contig_16650 124 . G T 480.672 . AB=0.319444;ABP=23.398;AC=4;AF=0.5;AN=8;AO=23;CIGAR=1M1X1M;DP=72;DPB=68.3333;DPRA=0;EPP=52.9542;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=809;QR=1238;RO=38;RPL=0;RPP=52.9542;RPPR=85.5263;RPR=23;RUN=1;SAF=0;SAP=52.9542;SAR=23;SRF=0;SRP=85.5263;SRR=38;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:13:10,0,3:10:318:0,3:0,103:-5.69621,-8.70651,-34.2873,0,-25.9181,-25.015 0|1:40:13,11,16:13:421:11,16:372,569:-42.4677,-16.2307,-46.8695,0,-3.79254,-29.1401 0|1:12:10,0,2:10:334:0,2:0,70:-3.03504,-6.04534,-33.0727,0,-27.3746,-26.7725 0|1:7:5,0,2:5:165:0,2:0,67:-4.25563,-5.76078,-19.0972,0,-13.6699,-13.0678 dDocent_Contig_16652 21 . T C 44.822 . AB=0.4;ABP=3.44459;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X;DP=21;DPB=21;DPRA=0.9375;EPP=7.35324;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=753;RO=19;RPL=0;RPP=7.35324;RPPR=44.2683;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:7:7,0:7:274:0:0:0,-2.10721,-25.0251 0/0:8:8,0:8:318:0:0:0,-2.40824,-28.9838 0/0:1:1,0:1:38:0:0:0,-0.30103,-3.79727 0/1:5:3,2:3:123:2:81:-6.18058,0,-9.95964 dDocent_Contig_16653 11 . A G 293.93 . AB=0.423077;ABP=4.34659;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=39;DPB=39;DPRA=1;EPP=26.8965;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=444;QR=1106;RO=28;RPL=0;RPP=26.8965;RPPR=63.8115;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:4:3,1:3:123:1:41:-2.89045,0,-10.2607 ./.:.:.:.:.:.:.:. 0/1:22:12,10:12:482:10:403:-30.0072,0,-37.1087 0/0:13:13,0:13:501:0:0:0,-3.91339,-45.4257 dDocent_Contig_16654 72 . A G 289.113 . AB=0.261905;ABP=23.691;AC=5;AF=0.625;AN=8;AO=13;CIGAR=1X;DP=44;DPB=44;DPRA=0;EPP=31.2394;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.461538;PAIREDR=0.677419;PAO=0;PQA=0;PQR=0;PRO=0;QA=503;QR=1175;RO=31;RPL=13;RPP=31.2394;RPPR=70.3259;RPR=0;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:16,2:16:603:2:77:-1.89029,0,-49.1882 0/1:16:9,7:9:338:7:274:-20.2118,0,-25.9544 0/1:8:6,2:6:234:2:79:-5.08939,0,-19.0219 1/1:2:0,2:0:0:2:73:-6.9307,-0.60206,0 dDocent_Contig_16655 107 . N C 165.614 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=5;CIGAR=1X;DP=5;DPB=5;DPRA=0;EPP=13.8677;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=173;QR=0;RO=0;RPL=0;RPP=13.8677;RPPR=0;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:4:0,4:0:0:4:138:-12.7604,-1.20412,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:1:0,1:0:0:1:35:-3.49863,-0.30103,0 dDocent_Contig_16656 59 . T A 590.5 . AB=0.171875;ABP=62.8615;AC=2;AF=0.25;AN=8;AO=11;CIGAR=9M1X4M;DP=81;DPB=84.5;DPRA=0;EPP=26.8965;EPPR=79.0118;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=4;NUMALT=7;ODDS=0;PAIRED=1;PAIREDR=0.942857;PAO=0;PQA=0;PQR=0;PRO=0;QA=385;QR=1265;RO=35;RPL=4;RPP=4.78696;RPPR=3.07234;RPR=7;RUN=1;SAF=4;SAP=4.78696;SAR=7;SRF=17;SRP=3.07234;SRR=18;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:18:14,0,0,0,0,0,2,2:14:512:0,0,0,0,0,2,2:0,0,0,0,0,71,70:-1.57323,-5.78764,-47.6351,-5.78764,-47.6351,-47.6351,-5.78764,-47.6351,-47.6351,-47.6351,-5.78764,-47.6351,-47.6351,-47.6351,-47.6351,-5.78764,-47.6351,-47.6351,-47.6351,-47.6351,-47.6351,0,-41.8509,-41.8509,-41.8509,-41.8509,-41.8509,-41.2488,-0.0946634,-41.9412,-41.9412,-41.9412,-41.9412,-41.9412,-36.1574,-41.3391 0|0:17:0,0,0,6,2,8,0,0:0:0:0,0,6,2,8,0,0:0,0,210,70,280,0,0:-39.8637,-39.8637,-39.8637,-39.8637,-39.8637,-39.8637,-22.7811,-22.7811,-22.7811,-20.9749,-34.17,-34.17,-34.17,-17.0874,-33.568,-17.0826,-17.0826,-17.0826,0,-11.3889,-14.6744,-39.8637,-39.8637,-39.8637,-22.7811,-34.17,-17.0826,-39.8637,-39.8637,-39.8637,-39.8637,-22.7811,-34.17,-17.0826,-39.8637,-39.8637 0|0:22:10,0,0,0,0,5,1,3:10:354:0,0,0,0,5,1,3:0,0,0,0,167,35,103:-10.5379,-13.5482,-42.409,-13.5482,-42.409,-42.409,-13.5482,-42.409,-42.409,-42.409,-13.5482,-42.409,-42.409,-42.409,-42.409,0,-28.8864,-28.8864,-28.8864,-28.8864,-27.3813,-10.6953,-39.5599,-39.5599,-39.5599,-39.5599,-26.0366,-39.2589,-5.16759,-34.0417,-34.0417,-34.0417,-34.0417,-20.517,-31.1921,-33.1386 0|1:24:11,4,2,0,0,0,0,6:11:399:4,2,0,0,0,0,6:117,56,0,0,0,0,212:-13.9785,-7.98063,-39.3683,-12.8607,-36.1432,-44.8524,-17.2899,-40.5724,-45.4544,-49.886,-17.2899,-40.5724,-45.4544,-49.886,-49.886,-17.2899,-40.5724,-45.4544,-49.886,-49.886,-49.886,-17.2899,-40.5724,-45.4544,-49.886,-49.886,-49.886,-49.886,0,-23.3066,-28.187,-32.617,-32.617,-32.617,-32.617,-30.8108 dDocent_Contig_16657 182 . G A 330.775 . AB=0.428571;ABP=3.32051;AC=4;AF=0.5;AN=8;AO=3;CIGAR=8M1X3M3D1M;DP=52;DPB=49.0625;DPRA=0;EPP=9.52472;EPPR=63.8115;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=0.333333;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=119;QR=1056;RO=28;RPL=3;RPP=9.52472;RPPR=63.8115;RPR=0;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=63.8115;SRR=28;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:7:2,2,3,0:2:62:2,3,0:81,119,0:-10.9855,-4.90505,-9.2454,-1.7968,0,-5.82336,-11.5875,-9.84746,-6.72645,-16.5388 0|1:12:8,2,0,1:8:295:2,0,1:78,0,40:-3.99609,0,-23.4885,-6.40433,-24.0906,-30.5047,-3.10842,-20.7928,-27.2076,-26.9066 0|0:14:5,3,0,5:5:196:3,0,5:122,0,187:-13.8229,-5.2427,-20.4816,-15.3281,-21.3847,-31.4571,0,-6.06276,-16.1432,-14.638 0|1:19:13,5,0,1:13:503:5,0,1:190,0,38:-11.6681,0,-39.8176,-15.5815,-41.3227,-56.9025,-12.465,-38.2067,-53.7863,-53.4853 dDocent_Contig_16658 20 . G A 1223.69 . AB=0.39823;ABP=13.1759;AC=4;AF=0.5;AN=8;AO=45;CIGAR=1X;DP=113;DPB=113;DPRA=0;EPP=100.727;EPPR=150.67;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.977778;PAIREDR=0.941176;PAO=0;PQA=0;PQR=0;PRO=0;QA=1804;QR=2671;RO=68;RPL=0;RPP=100.727;RPPR=150.67;RPR=45;RUN=1;SAF=45;SAP=100.727;SAR=0;SRF=68;SRP=150.67;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:19,8:19:759:8:318:-20.8579,0,-60.504 0/1:51:24,27:24:954:27:1077:-81.8656,0,-70.8067 0/1:21:18,3:18:681:3:123:-5.14316,0,-55.2755 0/1:14:7,7:7:277:7:286:-21.9004,0,-21.083 dDocent_Contig_16659 59 . G A 845.831 . AB=0.25641;ABP=23.1103;AC=1;AF=0.125;AN=8;AO=10;CIGAR=7M1X3M;DP=128;DPB=114.909;DPRA=0;EPP=24.725;EPPR=150.67;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=330;QR=2365;RO=68;RPL=10;RPP=24.725;RPPR=150.67;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=68;SRP=150.67;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:39:4,7,10,17:4:129:7,10,17:239,330,610:-64.8255,-46.6399,-54.932,-39.3577,-30.3674,-46.7455,-16.2757,-7.28101,0,-21.5582 0|0:56:41,5,0,10:41:1441:5,0,10:154,0,376:-18.5087,-18.5217,-134.283,-30.8509,-135.789,-148.136,0,-104.978,-117.325,-114.315 0|0:25:18,3,0,3:18:619:3,0,3:103,0,113:-3.88476,-0.920983,-50.3236,-9.3033,-51.2266,-59.5913,0,-41.9604,-50.326,-49.4229 0|0:8:5,1,0,2:5:176:1,0,2:35,0,76:-4.74765,-3.41501,-17.421,-6.2528,-17.722,-20.5685,0,-11.4812,-14.3286,-13.7265 dDocent_Contig_16660 43 . G A 1954.49 . AB=0.589286;ABP=10.7656;AC=4;AF=0.5;AN=8;AO=66;CIGAR=1X;DP=112;DPB=112;DPRA=0;EPP=146.327;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.0151515;PAIREDR=0.913043;PAO=0;PQA=0;PQR=0;PRO=0;QA=2614;QR=1808;RO=46;RPL=0;RPP=146.327;RPPR=102.898;RPR=66;RUN=1;SAF=66;SAP=146.327;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:33:6,27:6:223:27:1085:-88.0044,0,-10.4896 0/1:43:20,23:20:782:23:913:-69.5294,0,-57.7526 0/1:27:18,9:18:722:9:333:-22.1791,0,-57.1781 0/1:9:2,7:2:81:7:283:-23.1337,0,-4.97646 dDocent_Contig_16662 84 . G T 828.071 . AB=0.4;ABP=10.8276;AC=4;AF=0.5;AN=8;AO=36;CIGAR=1X;DP=90;DPB=90;DPRA=0;EPP=81.1833;EPPR=120.27;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=0.805556;PAIREDR=0.703704;PAO=0;PQA=0;PQR=0;PRO=0;QA=1288;QR=1854;RO=54;RPL=36;RPP=81.1833;RPPR=120.27;RPR=0;RUN=1;SAF=36;SAP=81.1833;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:43:29,14:29:992:14:497:-32.1201,0,-76.6446 0/1:12:6,6:6:208:6:213:-15.9039,0,-15.4473 0/1:27:15,12:15:515:12:433:-31.1836,0,-38.549 0/1:8:4,4:4:139:4:145:-10.9975,0,-10.4444 dDocent_Contig_16663 16 . T C 43.5669 . AB=0.4;ABP=3.44459;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=49;DPB=49;DPRA=0.227273;EPP=7.35324;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=1872;RO=47;RPL=0;RPP=7.35324;RPPR=105.07;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 0/0:19:19,0:19:744:0:0:0,-5.71957,-67.2771 0/0:25:25,0:25:1007:0:0:0,-7.52575,-90.925 0/1:5:3,2:3:121:2:81:-6.18058,0,-9.77505 dDocent_Contig_16664 16 . G A 420.586 . AB=0.25;ABP=44.2683;AC=3;AF=0.375;AN=8;AO=20;CIGAR=1X;DP=110;DPB=110;DPRA=0;EPP=46.4397;EPPR=198.443;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=810;QR=3563;RO=90;RPL=0;RPP=46.4397;RPPR=198.443;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=90;SRP=198.443;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:21,4:21:843:4:159:-7.16508,0,-68.6532 0/0:34:33,1:33:1296:1:41:0,-6.14045,-112.811 0/1:26:20,6:20:784:6:245:-14.6027,0,-63.0453 0/1:25:16,9:16:640:9:365:-25.6887,0,-50.407 dDocent_Contig_16668 55 . C T 897.45 . AB=0.4125;ABP=8.33041;AC=3;AF=0.375;AN=8;AO=35;CIGAR=1X;DP=104;DPB=104;DPRA=0;EPP=79.0118;EPPR=152.842;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=0.942029;PAO=0;PQA=0;PQR=0;PRO=0;QA=1367;QR=2738;RO=69;RPL=35;RPP=79.0118;RPPR=152.842;RPR=0;RUN=1;SAF=35;SAP=79.0118;SAR=0;SRF=69;SRP=152.842;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:44:26,18:26:1040:18:714:-51.3382,0,-80.6482 0/0:24:22,2:22:888:2:54:0,-2.09989,-75.1036 0/1:23:16,7:16:607:7:273:-18.0082,0,-48.0326 0/1:13:5,8:5:203:8:326:-25.7965,0,-14.7397 dDocent_Contig_16669 55 . T C 140.419 . AB=0.4;ABP=4.31318;AC=2;AF=0.25;AN=8;AO=6;CIGAR=1X;DP=33;DPB=33;DPRA=0.833333;EPP=16.0391;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.884615;PAO=0;PQA=0;PQR=0;PRO=0;QA=235;QR=997;RO=26;RPL=6;RPP=16.0391;RPPR=59.4686;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:8,4:8:303:4:156:-10.8035,0,-24.0133 0/0:16:15,0:15:582:0:0:0,-4.51545,-52.3345 0/1:3:1,2:1:33:2:79:-6.59454,0,-2.39604 0/0:2:2,0:2:79:0:0:0,-0.60206,-7.49763 dDocent_Contig_16670 37 . A G 1004.64 . AB=0.66;ABP=14.1282;AC=5;AF=0.625;AN=8;AO=34;CIGAR=1X;DP=52;DPB=52;DPRA=0;EPP=76.8404;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.441176;PAIREDR=0.823529;PAO=0;PQA=0;PQR=0;PRO=0;QA=1332;QR=684;RO=17;RPL=0;RPP=76.8404;RPPR=39.9253;RPR=34;RUN=1;SAF=34;SAP=76.8404;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:5,8:5:204:8:324:-25.6158,0,-14.8306 0/1:20:7,13:7:279:13:518:-40.947,0,-19.4594 0/1:17:5,12:5:201:12:454:-36.0754,0,-13.3534 1/1:2:0,1:0:0:1:36:-3.22353,-0.30103,0 dDocent_Contig_16672 26 . T C 278.109 . AB=0.233333;ABP=40.0701;AC=3;AF=0.375;AN=8;AO=14;CIGAR=1X;DP=100;DPB=100;DPRA=0.5;EPP=33.4109;EPPR=189.757;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=557;QR=3473;RO=86;RPL=0;RPP=33.4109;RPPR=189.757;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=86;SRP=189.757;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:40:40,0:40:1610:0:0:0,-12.0412,-145.133 0/1:29:24,5:24:977:5:197:-9.37602,0,-79.4958 0/1:14:10,4:10:406:4:162:-10.7525,0,-32.6862 0/1:17:12,5:12:480:5:198:-13.0802,0,-38.4324 dDocent_Contig_16673 12 . G T 65.0901 . AB=0.138889;ABP=43.7857;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=102;DPB=102;DPRA=1.63636;EPP=13.8677;EPPR=213.643;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.6289;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.938144;PAO=0;PQA=0;PQR=0;PRO=0;QA=204;QR=3741;RO=97;RPL=0;RPP=13.8677;RPPR=213.643;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=97;SRP=213.643;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:31,5:31:1188:5:204:-7.90695,0,-96.3731 0/0:20:20,0:20:761:0:0:0,-6.0206,-68.5836 0/0:29:29,0:29:1129:0:0:0,-8.72987,-101.885 0/0:17:17,0:17:663:0:0:0,-5.11751,-60.0048 dDocent_Contig_16674 17 . G A 213.104 . AB=0.27027;ABP=19.9713;AC=2;AF=0.25;AN=8;AO=10;CIGAR=1X;DP=58;DPB=58;DPRA=1.7619;EPP=24.725;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.854167;PAO=0;PQA=0;PQR=0;PRO=0;QA=390;QR=1863;RO=48;RPL=0;RPP=24.725;RPPR=107.241;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:12:12,0:12:456:0:0:0,-3.61236,-41.3795 0/1:17:12,5:12:454:5:195:-12.8056,0,-36.0844 0/1:20:15,5:15:594:5:195:-11.9028,0,-47.78 0/0:9:9,0:9:359:0:0:0,-2.70927,-32.6726 dDocent_Contig_16675 13 . C G 230.887 . AB=0.8;ABP=10.8276;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X3M9D1M;DP=37;DPB=31.9286;DPRA=1.11111;EPP=20.3821;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=44;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=315;QR=1075;RO=28;RPL=0;RPP=20.3821;RPPR=63.8115;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:14:14,0:14:536:0:0:0,-4.21442,-48.5806 0|0:12:11,0:11:419:0:0:0,-3.31133,-37.6519 0|1:10:2,8:2:80:8:315:-24.7868,0,-4.58149 0|0:1:1,0:1:40:0:0:0,-0.30103,-3.99568 dDocent_Contig_16676 53 . C A 37.0851 . AB=0.333333;ABP=4.45795;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X;DP=33;DPB=33;DPRA=0.666667;EPP=7.35324;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=76;QR=1232;RO=31;RPL=2;RPP=7.35324;RPPR=70.3259;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5,0:5:198:0:0:0,-1.50515,-18.1958 0/0:12:12,0:12:477:0:0:0,-3.61236,-43.2769 0/1:6:4,2:4:164:2:76:-5.40736,0,-13.3437 0/0:10:10,0:10:393:0:0:0,-3.0103,-35.726 dDocent_Contig_16678 25 . T G 68.4722 . AB=0.12963;ABP=67.3502;AC=3;AF=0.375;AN=8;AO=7;CIGAR=1X;DP=59;DPB=59;DPRA=3.6;EPP=18.2106;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.596154;PAO=0;PQA=0;PQR=0;PRO=0;QA=282;QR=2085;RO=52;RPL=0;RPP=18.2106;RPPR=115.927;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5,0:5:205:0:0:0,-1.50515,-18.835 0/1:24:20,4:20:798:4:160:-7.55871,0,-64.9109 0/1:13:12,1:12:485:1:40:-0.0822893,0,-40.0876 0/1:17:15,2:15:597:2:82:-2.66217,0,-48.9452 dDocent_Contig_16679 127 . C T 86.4427 . AB=0.5;ABP=3.0103;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=3X;DP=29;DPB=29;DPRA=0;EPP=7.35324;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=69;QR=744;RO=22;RPL=0;RPP=7.35324;RPPR=50.7827;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=50.7827;SRR=22;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:11:8,0,3:8:259:0,3:0,106:-6.57777,-8.98601,-29.8598,0,-21.2189,-20.3158 0|0:14:12,0,2:12:415:0,2:0,67:-2.14842,-5.76078,-39.494,0,-34.0697,-33.4676 0|1:4:2,2,0:2:70:2,0:69,0:-5.34854,0,-5.44328,-5.9506,-6.04534,-11.6486 .:.:.:.:.:.:.:. dDocent_Contig_16681 7 . A C 146.788 . AB=0.234043;ABP=60.7622;AC=3;AF=0.375;AN=8;AO=24;CIGAR=2X;DP=149;DPB=149;DPRA=0;EPP=55.1256;EPPR=274.444;GTI=0;LEN=1;MEANALT=1;MQM=24.2083;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.672;PAO=0;PQA=0;PQR=0;PRO=0;QA=914;QR=4741;RO=125;RPL=0;RPP=55.1256;RPPR=274.444;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=125;SRP=274.444;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:55:53,2:53:2014:2:71:0,-12.0699,-177.016 0|1:53:43,10:43:1628:10:382:-5.73469,0,-130.833 0|1:28:19,9:19:720:9:347:-11.5666,0,-56.7017 0|1:13:10,3:10:379:3:114:-2.75676,0,-30.5502 dDocent_Contig_16682 10 . G A 80.1703 . AB=0.266667;ABP=10.1038;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=75;DPB=75;DPRA=0.75;EPP=11.6962;EPPR=157.185;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.887324;PAO=0;PQA=0;PQR=0;PRO=0;QA=154;QR=2848;RO=71;RPL=0;RPP=11.6962;RPPR=157.185;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=71;SRP=157.185;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:29:29,0:29:1150:0:0:0,-8.72987,-103.779 0/1:15:11,4:11:445:4:154:-9.71573,0,-35.89 0/0:29:29,0:29:1172:0:0:0,-8.72987,-105.757 0/0:2:2,0:2:81:0:0:0,-0.60206,-7.68573 dDocent_Contig_16683 56 . C T 85.5218 . AB=0.333333;ABP=5.9056;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=25;DPB=25;DPRA=2.76923;EPP=11.6962;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=150;QR=850;RO=21;RPL=4;RPP=11.6962;RPPR=48.6112;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:11,0:11:446:0:0:0,-3.31133,-40.4958 0/1:12:8,4:8:324:4:150:-10.25,0,-25.9168 0/0:1:1,0:1:41:0:0:0,-0.30103,-4.09457 0/0:1:1,0:1:39:0:0:0,-0.30103,-3.89656 dDocent_Contig_16686 140 . C T 505.46 . AB=0.285714;ABP=33.7211;AC=4;AF=0.5;AN=8;AO=22;CIGAR=1X;DP=77;DPB=77;DPRA=0;EPP=50.7827;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=866;QR=2038;RO=55;RPL=0;RPP=50.7827;RPPR=122.441;RPR=22;RUN=1;SAF=0;SAP=50.7827;SAR=22;SRF=0;SRP=122.441;SRR=55;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:5,5:5:165:5:198:-15.1871,0,-12.1546 0/1:22:15,7:15:579:7:279:-18.8569,0,-45.8207 0/1:34:31,3:31:1146:3:113:-0.300996,0,-93.1837 0/1:11:4,7:4:148:7:276:-21.8978,0,-10.3668 dDocent_Contig_16687 14 . A G 100.482 . AB=0.363636;ABP=4.78696;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=32;DPB=32;DPRA=1.57143;EPP=11.6962;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=163;QR=1108;RO=28;RPL=0;RPP=11.6962;RPPR=63.8115;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:4:4,0:4:154:0:0:0,-1.20412,-14.2318 0/1:11:7,4:7:276:4:163:-11.7471,0,-21.8984 0/0:7:7,0:7:280:0:0:0,-2.10721,-25.5707 0/0:10:10,0:10:398:0:0:0,-3.0103,-36.1797 dDocent_Contig_16689 60 . C T 539.21 . AB=0.468085;ABP=3.42611;AC=3;AF=0.5;AN=6;AO=22;CIGAR=1X;DP=47;DPB=47;DPRA=0;EPP=50.7827;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=806;QR=1003;RO=25;RPL=22;RPP=50.7827;RPPR=57.2971;RPR=0;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:11,11:11:442:11:393:-29.0793,0,-33.5118 ./.:.:.:.:.:.:.:. 0/1:10:5,5:5:204:5:181:-13.6314,0,-15.7337 0/1:15:9,6:9:357:6:232:-16.7331,0,-27.9755 dDocent_Contig_16690 38 . T A 456.306 . AB=0.317073;ABP=14.9269;AC=5;AF=0.625;AN=8;AO=17;CIGAR=1X;DP=45;DPB=45;DPRA=0;EPP=39.9253;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=687;QR=1114;RO=28;RPL=0;RPP=39.9253;RPPR=63.8115;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:15,3:15:590:3:122:-5.95395,0,-48.0186 0/1:16:9,7:9:361:7:284:-21.1175,0,-28.0363 1/1:4:0,4:0:0:4:159:-14.6917,-1.20412,0 0/1:7:4,3:4:163:3:122:-9.26528,0,-12.9512 dDocent_Contig_16692 21 . T A 386.13 . AB=0.290323;ABP=26.6864;AC=4;AF=0.5;AN=8;AO=18;CIGAR=1X;DP=62;DPB=62;DPRA=0;EPP=42.0968;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=702;QR=1746;RO=44;RPL=0;RPP=42.0968;RPPR=98.5551;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:17,4:17:691:4:157:-8.18696,0,-56.197 0/1:21:14,7:14:557:7:272:-18.5209,0,-44.1483 0/1:14:10,4:10:376:4:158:-10.386,0,-29.9599 0/1:6:3,3:3:122:3:115:-8.91703,0,-9.56631 dDocent_Contig_16694 15 . G A 1288.09 . AB=0.237179;ABP=96.6063;AC=3;AF=0.375;AN=8;AO=37;CIGAR=4M1X2M;DP=156;DPB=156;DPRA=0;EPP=52.3673;EPPR=52.3673;GTI=0;LEN=1;MEANALT=6;MQM=60;MQMR=60;NS=4;NUMALT=6;ODDS=0;PAIRED=0.351351;PAIREDR=0.756757;PAO=0;PQA=0;PQR=0;PRO=0;QA=1427;QR=1410;RO=37;RPL=0;RPP=83.3548;RPPR=83.3548;RPR=37;RUN=1;SAF=33;SAP=52.3673;SAR=4;SRF=33;SRP=52.3673;SRR=4;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:84:23,6,13,3,9,13,15:23:883:6,13,3,9,13,15:213,432,116,207,494,587:-37.1532,-26.7373,-97.4272,-10.1471,-65.3059,-78.73,-34.5457,-89.7034,-73.1135,-106.138,-30.6046,-85.7573,-69.1701,-93.5643,-100.384,-3.55911,-58.7219,-42.1321,-66.53,-62.5856,-72.147,0,-55.1624,-38.5732,-62.9703,-59.027,-31.9874,-67.9852 1|0:30:1,1,9,2,0,9,8:1:37:1,9,2,0,9,8:37,289,78,0,345,313:-48.4188,-45.8218,-48.5483,-26.012,-26.1417,-26.3296,-42.3055,-42.435,-22.6253,-44.7311,-48.7198,-48.8493,-29.0389,-45.3331,-51.7474,-20.3941,-20.5238,-0.718095,-17.0058,-23.4225,-20.7132,-25.3055,-25.4352,-5.63462,-21.9179,-28.3333,0,-25.925 0|1:26:13,0,1,0,4,7,1:13:490:0,1,0,4,7,1:0,40,0,84,279,40:-19.1408,-23.0542,-63.2296,-19.7534,-59.9327,-59.6317,-23.0542,-63.2296,-59.9327,-63.2296,-17.843,-57.9828,-54.6871,-57.9828,-56.7787,0,-40.2372,-36.9387,-40.2372,-35.0008,-38.13,-19.7534,-59.9327,-56.6357,-59.9327,-54.6871,-36.9387,-59.6317 0|1:16:0,1,2,0,2,8,1:0:0:1,2,0,2,8,1:37,74,0,42,309,40:-31.4717,-28.4572,-28.1562,-25.4183,-22.4035,-24.8162,-31.4717,-28.4572,-25.4183,-31.4717,-28.8577,-25.8449,-22.8081,-28.8577,-28.2556,-6.06609,-3.04631,0,-6.06609,-3.47549,-3.65785,-28.4427,-25.4281,-22.389,-28.4427,-25.8305,-3.03174,-28.1417 dDocent_Contig_16695 28 . T A 127.954 . AB=0.25;ABP=16.0391;AC=2;AF=0.25;AN=8;AO=6;CIGAR=1X2M1X;DP=39;DPB=39;DPRA=1.6;EPP=16.0391;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.166667;PAIREDR=0.666667;PAO=0;PQA=0;PQR=0;PRO=0;QA=236;QR=1301;RO=33;RPL=0;RPP=16.0391;RPPR=74.6689;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:11:11,0:11:438:0:0:0,-3.31133,-39.7749 0|1:12:7,5:7:278:5:197:-14.4922,0,-21.7779 0|1:12:11,1:11:428:1:39:-0.284205,0,-35.2555 0|0:4:4,0:4:157:0:0:0,-1.20412,-14.5088 dDocent_Contig_16696 9 . T C 264.637 . AB=0.434783;ABP=3.86001;AC=2;AF=0.25;AN=8;AO=10;CIGAR=1X;DP=58;DPB=58;DPRA=0.657143;EPP=24.725;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.791667;PAO=0;PQA=0;PQR=0;PRO=0;QA=388;QR=1780;RO=48;RPL=0;RPP=24.725;RPPR=107.241;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:32:32,0:32:1188:0:0:0,-9.63296,-107.218 0/0:3:3,0:3:116:0:0:0,-0.90309,-10.8177 0/1:12:3,9:3:100:9:349:-28.1584,0,-5.71655 0/1:11:10,1:10:376:1:39:-0.585235,0,-30.8803 dDocent_Contig_16698 9 . T C 984.33 . AB=0.416667;ABP=5.18177;AC=4;AF=0.5;AN=8;AO=32;CIGAR=1X;DP=55;DPB=55;DPRA=8.83333;EPP=72.4974;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.9375;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1241;QR=843;RO=22;RPL=0;RPP=72.4974;RPPR=50.7827;RPR=32;RUN=1;SAF=32;SAP=72.4974;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:17:0,17:0:0:17:662:-59.9171,-5.11751,0 0/1:20:11,8:11:420:8:308:-21.9736,0,-32.043 0/1:16:9,7:9:347:7:271:-19.94,0,-26.7732 0/0:2:2,0:2:76:0:0:0,-0.60206,-7.21467 dDocent_Contig_16699 49 . T A 314.172 . AB=0.361111;ABP=9.04217;AC=3;AF=0.375;AN=8;AO=13;CIGAR=1X;DP=40;DPB=40;DPRA=3;EPP=4.51363;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=0.538462;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=516;QR=910;RO=27;RPL=6;RPP=3.17734;RPPR=61.6401;RPR=7;RUN=1;SAF=12;SAP=23.2217;SAR=1;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:14,6:14:457:6:243:-16.2276,0,-35.4191 0/1:6:1,5:1:39:5:196:-16.2089,0,-2.09038 0/1:10:8,2:8:272:2:77:-4.2979,0,-21.7921 0/0:4:4,0:4:142:0:0:0,-1.20412,-13.1287 dDocent_Contig_16700 51 . C A 446.852 . AB=0.375;ABP=5.18177;AC=5;AF=0.625;AN=8;AO=14;CIGAR=2X5M;DP=34;DPB=34;DPRA=0.8;EPP=33.4109;EPPR=31.2394;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.214286;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=544;QR=499;RO=13;RPL=14;RPP=33.4109;RPPR=31.2394;RPR=0;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=13;SRP=31.2394;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:6:0,0,6:0:0:0,6:0,236:-21.6121,-21.6121,-21.6121,-1.80618,-1.80618,0 0|1:16:6,4,6:6:235:4,6:156,229:-16.9727,-5.95292,-24.078,0,-6.50315,-17.519 0|0:10:7,0,0:7:264:0,0:0,0:0,-2.10721,-23.7984,-2.10721,-23.7984,-23.7984 1|1:2:0,0,2:0:0:0,2:0,79:-7.49763,-7.49763,-7.49763,-0.60206,-0.60206,0 dDocent_Contig_16702 54 . G A 233.526 . AB=0.292683;ABP=18.3165;AC=4;AF=0.5;AN=8;AO=12;CIGAR=1X;DP=41;DPB=41;DPRA=0;EPP=29.068;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=56.9167;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.583333;PAIREDR=0.724138;PAO=0;PQA=0;PQR=0;PRO=0;QA=442;QR=1131;RO=29;RPL=0;RPP=29.068;RPPR=65.983;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:5,4:5:195:4:148:-10.9312,0,-15.2128 0/1:6:4,2:4:139:2:74:-5.20565,0,-11.0422 0/1:12:11,1:11:440:1:37:-0.0854694,0,-36.3431 0/1:14:9,5:9:357:5:183:-12.6123,0,-28.2742 dDocent_Contig_16703 21 . G A 621.727 . AB=0.173913;ABP=24.253;AC=4;AF=0.5;AN=8;AO=4;CIGAR=1X6M;DP=64;DPB=64;DPRA=0;EPP=11.6962;EPPR=74.6689;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=162;QR=1289;RO=33;RPL=0;RPP=11.6962;RPPR=74.6689;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:18:10,8,0:10:399:8,0:299,0:-19.1717,0,-30.8517,-22.182,-33.26,-55.0777 0|1:13:8,5,0:8:314:5,0:196,0:-12.7126,0,-24.7109,-15.1208,-26.216,-40.9636 0|1:23:10,8,4:10:395:8,4:320,162:-23.3252,0,-30.0902,-12.9758,-19.1378,-44.2736 0|1:10:5,5,0:5:181:5,0:189,0:-14.3611,0,-13.6273,-15.8662,-15.1325,-30.6291 dDocent_Contig_16704 125 . G T 174.162 . AB=0.5;ABP=3.0103;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=52;DPB=52;DPRA=1.10526;EPP=18.2106;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=252;QR=1648;RO=45;RPL=0;RPP=18.2106;RPPR=100.727;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=100.727;SRR=45;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:7,7:7:255:7:252:-18.8141,0,-19.0876 0/0:20:20,0:20:737:0:0:0,-6.0206,-66.6604 0/0:13:13,0:13:477:0:0:0,-3.91339,-43.2729 0/0:5:5,0:5:179:0:0:0,-1.50515,-16.4604 dDocent_Contig_16705 196 . T C 525.748 . AB=0;ABP=0;AC=2;AF=0.25;AN=8;AO=16;CIGAR=1X;DP=51;DPB=51;DPRA=1.5;EPP=37.7539;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=617;QR=1332;RO=35;RPL=16;RPP=37.7539;RPPR=79.0118;RPR=0;RUN=1;SAF=0;SAP=37.7539;SAR=16;SRF=0;SRP=79.0118;SRR=35;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:17:1,16:1:39:16:617:-51.9725,-1.22095,0 0/0:25:25,0:25:944:0:0:0,-7.52575,-85.2727 0/0:6:6,0:6:234:0:0:0,-1.80618,-21.4311 0/0:3:3,0:3:115:0:0:0,-0.90309,-10.7249 dDocent_Contig_16706 9 . T C 292.729 . AB=0.285714;ABP=8.59409;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X2M2X1M2X1M1X2M1X;DP=28;DPB=28;DPRA=3.5;EPP=11.6962;EPPR=31.2394;GTI=0;LEN=1;MEANALT=2;MQM=27.25;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.75;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=153;QR=504;RO=13;RPL=0;RPP=11.6962;RPPR=31.2394;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=13;SRP=31.2394;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:12:5,0,7:5:194:0,7:0,267:-20.753,-22.2581,-38.2003,0,-16.327,-14.2198 0|0:9:6,1,2:6:235:1,2:40,80:-4.82154,-4.29997,-23.318,0,-17.0577,-18.8038 1|0:5:0,3,2:0:0:3,2:113,80:-8.04888,-1.86638,-0.963288,-6.36428,0,-5.76222 0|0:2:2,0,0:2:75:0,0:0,0:0,-0.60206,-7.11959,-0.60206,-7.11959,-7.11959 dDocent_Contig_16707 34 . G A 485.484 . AB=0.261905;ABP=44.3717;AC=4;AF=0.5;AN=8;AO=22;CIGAR=1X;DP=84;DPB=84;DPRA=0;EPP=50.7827;EPPR=137.642;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=884;QR=2471;RO=62;RPL=0;RPP=50.7827;RPPR=137.642;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:18,5:18:712:5:204:-11.8203,0,-57.4805 0/1:33:26,7:26:1031:7:284:-16,0,-83.1452 0/1:22:13,9:13:524:9:359:-26.0487,0,-40.8852 0/1:6:5,1:5:204:1:37:-1.89165,0,-16.9379 dDocent_Contig_16709 79 . C T 964.739 . AB=0.468354;ABP=3.69747;AC=4;AF=0.5;AN=8;AO=37;CIGAR=1X;DP=79;DPB=79;DPRA=0;EPP=83.3548;EPPR=85.7331;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.432432;PAIREDR=0.452381;PAO=0;PQA=0;PQR=0;PRO=0;QA=1403;QR=1625;RO=42;RPL=37;RPP=83.3548;RPPR=94.2121;RPR=0;RUN=1;SAF=37;SAP=83.3548;SAR=0;SRF=41;SRP=85.7331;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:10,18:10:386:18:700:-54.9052,0,-26.6682 0/1:10:3,7:3:118:7:271:-21.746,0,-7.99259 0/1:30:22,8:22:851:8:296:-17.96,0,-67.88 0/1:11:7,4:7:270:4:136:-9.26066,0,-21.354 dDocent_Contig_16710 23 . G T 52.0317 . AB=0.214286;ABP=12.937;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=62;DPB=62;DPRA=0.875;EPP=9.52472;EPPR=131.127;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=116;QR=2312;RO=59;RPL=0;RPP=9.52472;RPPR=131.127;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=59;SRP=131.127;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:11,3:11:429:3:116:-6.60109,0,-34.7452 0/0:6:6,0:6:238:0:0:0,-1.80618,-21.7933 0/0:12:12,0:12:485:0:0:0,-3.61236,-44.0003 0/0:30:30,0:30:1160:0:0:0,-9.0309,-104.682 dDocent_Contig_16711 44 . A G 75.9109 . AB=0.16;ABP=53.2147;AC=4;AF=0.5;AN=8;AO=8;CIGAR=1X;DP=50;DPB=50;DPRA=0;EPP=20.3821;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=316;QR=1642;RO=42;RPL=0;RPP=20.3821;RPPR=94.2121;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:13,2:13:516:2:78:-2.88785,0,-42.2677 0/1:28:25,3:25:966:3:122:-2.94365,0,-78.8029 0/1:3:1,2:1:38:2:79:-6.59454,0,-2.89418 0/1:4:3,1:3:122:1:37:-2.49371,0,-10.1684 dDocent_Contig_16712 25 . G A 5210.09 . AB=0.760331;ABP=74.2382;AC=6;AF=0.75;AN=8;AO=155;CIGAR=1X;DP=184;DPB=184;DPRA=0;EPP=339.589;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6221;QR=1168;RO=29;RPL=0;RPP=339.589;RPPR=65.983;RPR=155;RUN=1;SAF=155;SAP=339.589;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:86:20,66:20:809:66:2655:-213.181,0,-47.2353 0/1:35:9,26:9:359:26:1048:-84.0741,0,-22.1345 1/1:31:0,31:0:0:31:1232:-111.143,-9.33193,0 1/1:32:0,32:0:0:32:1286:-116.008,-9.63296,0 dDocent_Contig_16714 48 . G A 76.992 . AB=0.266667;ABP=10.1038;AC=2;AF=0.25;AN=8;AO=4;CIGAR=1X2M1X;DP=31;DPB=31;DPRA=0.9375;EPP=11.6962;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=159;QR=1050;RO=27;RPL=0;RPP=11.6962;RPPR=61.6401;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:9:8,1:8:315:1:39:-1.18729,0,-26.0047 0|0:14:14,0:14:541:0:0:0,-4.21442,-49.0292 0|0:2:2,0:2:81:0:0:0,-0.60206,-7.68573 0|1:6:3,3:3:113:3:120:-9.38151,0,-8.7314 dDocent_Contig_16716 171 . C T 1663.65 . AB=0.54386;ABP=4.9151;AC=4;AF=0.5;AN=8;AO=62;CIGAR=1X;DP=114;DPB=114;DPRA=0;EPP=137.642;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2298;QR=1841;RO=52;RPL=62;RPP=137.642;RPPR=115.927;RPR=0;RUN=1;SAF=0;SAP=137.642;SAR=62;SRF=0;SRP=115.927;SRR=52;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:40:17,23:17:612:23:878:-67.2721,0,-43.3498 0/1:31:7,24:7:259:24:882:-70.3394,0,-14.3286 0/1:30:23,7:23:779:7:239:-12.8049,0,-61.3652 0/1:13:5,8:5:191:8:299:-23.3464,0,-13.6431 dDocent_Contig_16717 89 . G A 42.811 . AB=0.157895;ABP=41.6397;AC=2;AF=0.25;AN=8;AO=6;CIGAR=1X;DP=61;DPB=61;DPRA=1.65217;EPP=16.0391;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.909091;PAO=0;PQA=0;PQR=0;PRO=0;QA=207;QR=1901;RO=55;RPL=6;RPP=16.0391;RPPR=122.441;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:13:13,0:13:453:0:0:0,-3.91339,-41.1028 0/1:33:28,5:28:967:5:172:-5.88443,0,-77.4098 0/0:10:10,0:10:341:0:0:0,-3.0103,-31.0202 0/1:5:4,1:4:140:1:35:-1.99348,0,-11.4398 dDocent_Contig_16718 12 . A T 960.266 . AB=0.130435;ABP=30.2953;AC=0;AF=0;AN=8;AO=3;CIGAR=1X2M1X;DP=70;DPB=70;DPRA=0;EPP=9.52472;EPPR=68.1545;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.666667;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=98;QR=1167;RO=30;RPL=0;RPP=9.52472;RPPR=68.1545;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:23:5,3,15:5:198:3,15:98,578:-46.006,-39.6096,-55.0062,0,-8.45483,-11.8248 0|0:23:9,0,14:9:352:0,14:0,516:-39.8524,-42.5617,-71.5119,0,-29.3322,-25.1178 0|0:13:8,0,5:8:307:0,5:0,195:-14.0108,-16.419,-41.6139,0,-25.5821,-24.077 0|0:11:8,0,2:8:310:0,2:0,73:-3.55229,-5.96053,-31.4423,0,-25.4822,-24.8801 dDocent_Contig_16719 9 . T C 328.292 . AB=0.133333;ABP=38.0434;AC=3;AF=0.375;AN=8;AO=4;CIGAR=1X3M;DP=110;DPB=110;DPRA=0;EPP=11.6962;EPPR=183.243;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=0.771084;PAO=0;PQA=0;PQR=0;PRO=0;QA=158;QR=3260;RO=83;RPL=0;RPP=11.6962;RPPR=183.243;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=83;SRP=183.243;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:16:9,2,0,5:9:357:2,0,5:77,0,200:-13.7757,-10.1671,-38.9506,-16.485,-39.5527,-45.8732,0,-23.0772,-29.3971,-27.892 0|1:26:20,6,0,0:20:790:6,0,0:227,0,0:-12.9432,0,-63.5964,-18.9638,-65.4025,-83.9848,-18.9638,-65.4025,-83.9848,-83.9848 0|1:30:21,5,4,0:21:827:5,4,0:199,158,0:-10.0662,0,-66.5294,-3.38747,-55.0327,-70.2156,-16.3879,-68.0346,-71.4197,-84.4214 0|1:38:33,4,0,0:33:1286:4,0,0:160,0,0:-3.43799,0,-104.712,-13.372,-105.916,-119.098,-13.372,-105.916,-119.098,-119.098 dDocent_Contig_16720 21 . G A 301.388 . AB=0.202703;ABP=59.8207;AC=3;AF=0.375;AN=8;AO=15;CIGAR=1X;DP=79;DPB=79;DPRA=4.93333;EPP=35.5824;EPPR=141.985;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=609;QR=2551;RO=64;RPL=0;RPP=35.5824;RPPR=141.985;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=64;SRP=141.985;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:44:32,12:32:1282:12:488:-31.0262,0,-102.4 0/1:17:15,2:15:603:2:80:-2.47407,0,-49.4902 0/1:13:12,1:12:466:1:41:-0.181177,0,-38.3722 0/0:5:5,0:5:200:0:0:0,-1.50515,-18.3793 dDocent_Contig_16723 12 . T C 636.11 . AB=0.325;ABP=24.2907;AC=4;AF=0.5;AN=8;AO=26;CIGAR=1X;DP=80;DPB=80;DPRA=0;EPP=59.4686;EPPR=120.27;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=54.8704;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.87037;PAO=0;PQA=0;PQR=0;PRO=0;QA=1040;QR=2107;RO=54;RPL=0;RPP=59.4686;RPPR=120.27;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:32:24,8:24:939:8:315:-19.0795,0,-73.8096 0/1:16:13,3:13:520:3:122:-6.55601,0,-42.3298 0/1:17:12,5:12:451:5:198:-13.0783,0,-30.1817 0/1:15:5,10:5:197:10:405:-32.2952,0,-7.89319 dDocent_Contig_16724 81 . G A 63.1784 . AB=0.137931;ABP=69.053;AC=1;AF=0.125;AN=8;AO=11;CIGAR=1X;DP=129;DPB=129;DPRA=2.68571;EPP=26.8965;EPPR=259.244;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=384;QR=4078;RO=118;RPL=11;RPP=26.8965;RPPR=259.244;RPR=0;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=118;SRP=259.244;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:58:50,8:50:1725:8:276:-7.71559,0,-138.079 0/0:36:33,3:33:1134:3:108:0,-0.76191,-92.2915 0/0:17:17,0:17:593:0:0:0,-5.11751,-53.6982 0/0:18:18,0:18:626:0:0:0,-5.41854,-56.6665 dDocent_Contig_16725 132 . C A 99.4986 . AB=0.174603;ABP=60.9507;AC=3;AF=0.375;AN=8;AO=11;CIGAR=1X;DP=93;DPB=93;DPRA=0.7;EPP=26.8965;EPPR=181.071;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=359;QR=2805;RO=82;RPL=0;RPP=26.8965;RPPR=181.071;RPR=11;RUN=1;SAF=0;SAP=26.8965;SAR=11;SRF=0;SRP=181.071;SRR=82;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:37:33,4:33:1149:4:129:-0.790486,0,-92.5804 0/0:30:30,0:30:1015:0:0:0,-9.0309,-91.6561 0/1:5:4,1:4:129:1:35:-1.99348,0,-10.4239 0/1:21:15,6:15:512:6:195:-11.5479,0,-40.0831 dDocent_Contig_16726 44 . T A 34.8472 . AB=0.25;ABP=7.35324;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X;DP=48;DPB=48;DPRA=0.6;EPP=7.35324;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.934783;PAO=0;PQA=0;PQR=0;PRO=0;QA=80;QR=1830;RO=46;RPL=0;RPP=7.35324;RPPR=102.898;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:18:18,0:18:702:0:0:0,-5.41854,-63.5012 0/0:11:11,0:11:440:0:0:0,-3.31133,-39.9554 0/0:11:11,0:11:447:0:0:0,-3.31133,-40.5859 0/1:8:6,2:6:241:2:80:-5.18355,0,-19.6581 dDocent_Contig_16727 125 . A G 137.038 . AB=0.352941;ABP=6.20364;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=145;DPB=145;DPRA=1.30159;EPP=18.2106;EPPR=302.673;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=261;QR=4934;RO=138;RPL=0;RPP=18.2106;RPPR=302.673;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=302.673;SRR=138;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:65:64,1:64:2282:1:37:0,-15.8691,-201.936 0/0:37:37,0:37:1336:0:0:0,-11.1381,-120.537 0/1:17:11,6:11:395:6:224:-15.4027,0,-30.7728 0/0:26:26,0:26:921:0:0:0,-7.82678,-83.2042 dDocent_Contig_16728 59 . G A 348.512 . AB=0.225352;ABP=49.5287;AC=2;AF=0.25;AN=8;AO=16;CIGAR=11M1X2M;DP=76;DPB=73.4286;DPRA=4.73333;EPP=37.7539;EPPR=124.613;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=627;QR=2190;RO=56;RPL=16;RPP=37.7539;RPPR=124.613;RPR=0;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:30:25,0,5:25:986:0,5:0,202:-9.53059,-17.0563,-98.175,0,-81.5206,-80.0155 0|1:15:6,0,9:6:240:0,9:0,345:-26.8803,-28.6865,-48.4634,0,-20.1698,-17.4606 0|0:26:21,3,2:21:813:3,2:123,80:-3.83654,0,-65.8636,-3.57197,-60.1754,-69.7284 0|0:5:4,0,0:4:151:0,0:0,0:0,-1.20412,-13.5613,-1.20412,-13.5613,-13.5613 dDocent_Contig_16729 8 . A T 586.952 . AB=0.378788;ABP=11.433;AC=4;AF=0.5;AN=8;AO=25;CIGAR=1X;DP=66;DPB=66;DPRA=0;EPP=57.2971;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.32;PAIREDR=0.878049;PAO=0;PQA=0;PQR=0;PRO=0;QA=939;QR=1568;RO=41;RPL=0;RPP=57.2971;RPPR=92.0407;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:16,7:16:612:7:267:-17.4681,0,-48.4952 0/1:20:10,10:10:380:10:360:-26.7142,0,-28.5324 0/1:13:10,3:10:385:3:117:-6.99699,0,-31.0933 0/1:10:5,5:5:191:5:195:-14.9139,0,-14.5485 dDocent_Contig_16730 90 . A T 198.197 . AB=0.5;ABP=3.0103;AC=2;AF=0.25;AN=8;AO=6;CIGAR=3X;DP=22;DPB=22;DPRA=1.2;EPP=16.0391;EPPR=33.4109;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=214;QR=484;RO=14;RPL=6;RPP=16.0391;RPPR=33.4109;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=14;SRP=33.4109;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:9:5,4,0:5:173:4,0:142,0:-10.42,0,-13.2009,-11.9252,-14.405,-25.9793 0|0:8:8,0,0:8:276:0,0:0,0:0,-2.40824,-25.1759,-2.40824,-25.1759,-25.1759 0|1:3:1,2,0:1:35:2,0:72,0:-5.93363,0,-2.59554,-6.23466,-3.1976,-9.07908 0|0:2:0,0,2:0:0:0,2:0,72:-6.83672,-6.83672,-6.83672,-0.60206,-0.60206,0 dDocent_Contig_16731 13 . T C 193.083 . AB=0.28125;ABP=16.3106;AC=2;AF=0.25;AN=8;AO=9;CIGAR=1X;DP=54;DPB=54;DPRA=1.45455;EPP=22.5536;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.777778;PAIREDR=0.866667;PAO=0;PQA=0;PQR=0;PRO=0;QA=351;QR=1796;RO=45;RPL=0;RPP=22.5536;RPPR=100.727;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:18,5:18:721:5:189:-10.4485,0,-58.2905 0/1:9:5,4:5:201:4:162:-12.2577,0,-15.7612 0/0:13:13,0:13:505:0:0:0,-3.91339,-45.792 0/0:9:9,0:9:369:0:0:0,-2.70927,-33.5755 dDocent_Contig_16732 38 . T C 305.73 . AB=0.176471;ABP=95.7449;AC=3;AF=0.375;AN=8;AO=21;CIGAR=1X4M;DP=156;DPB=156;DPRA=0;EPP=48.6112;EPPR=289.645;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=843;QR=5154;RO=132;RPL=0;RPP=48.6112;RPPR=289.645;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=132;SRP=289.645;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:49:44,0,5:44:1691:0,5:0,202:-3.8114,-17.0567,-155.847,0,-139.192,-137.687 0|0:54:50,0,3:50:1988:0,3:0,117:0,-15.0515,-178.731,-5.44184,-169.114,-168.211 0|1:32:21,2,9:21:833:2,9:81,360:-23.3296,-22.9712,-90.9333,0,-61.8791,-65.8497 0|1:21:17,0,4:17:642:0,4:0,164:-8.82827,-13.9458,-66.529,0,-52.9866,-51.7825 dDocent_Contig_16733 48 . T C 538.508 . AB=0.388889;ABP=8.80089;AC=4;AF=0.5;AN=8;AO=21;CIGAR=1X;DP=54;DPB=54;DPRA=0;EPP=48.6112;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=843;QR=1290;RO=33;RPL=0;RPP=48.6112;RPPR=74.6689;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:8,6:8:314:6:237:-17.4873,0,-24.4089 0/1:28:16,12:16:618:12:483:-35.3925,0,-47.52 0/1:5:3,2:3:120:2:82:-6.27453,0,-9.68254 0/1:7:6,1:6:238:1:41:-1.98736,0,-19.686 dDocent_Contig_16734 30 . A G 394.94 . AB=0.295082;ABP=25.259;AC=3;AF=0.5;AN=6;AO=18;CIGAR=1X;DP=61;DPB=61;DPRA=0;EPP=42.0968;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=691;QR=1717;RO=43;RPL=0;RPP=42.0968;RPPR=96.3836;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:8,13:8:321:13:489:-38.0192,0,-22.9354 0/1:34:30,4:30:1192:4:161:-4.64025,0,-97.3233 ./.:.:.:.:.:.:.:. 0/1:6:5,1:5:204:1:41:-2.28839,0,-16.9379 dDocent_Contig_16735 20 . G A 106.357 . AB=0.181818;ABP=32.0291;AC=2;AF=0.25;AN=8;AO=6;CIGAR=1X;DP=109;DPB=109;DPRA=0.434211;EPP=16.0391;EPPR=226.672;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=57.8738;NS=4;NUMALT=1;ODDS=0;PAIRED=0.333333;PAIREDR=0.543689;PAO=0;PQA=0;PQR=0;PRO=0;QA=244;QR=4069;RO=103;RPL=0;RPP=16.0391;RPPR=226.672;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=103;SRP=226.672;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:46:46,0:46:1838:0:0:0,-13.8474,-163.781 0/1:21:16,5:16:606:5:203:-12.3314,0,-48.5444 0/0:30:30,0:30:1185:0:0:0,-9.0309,-105.025 0/1:12:11,1:11:440:1:41:-0.482207,0,-36.3341 dDocent_Contig_16737 78 . C A 204.128 . AB=0.344828;ABP=9.07545;AC=4;AF=0.5;AN=8;AO=10;CIGAR=1X;DP=29;DPB=29;DPRA=0;EPP=24.725;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=383;QR=740;RO=19;RPL=10;RPP=24.725;RPPR=44.2683;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:6,6:6:234:6:228:-17.2719,0,-17.8187 0/1:7:5,2:5:194:2:77:-5.20193,0,-15.7256 0/1:8:7,1:7:273:1:39:-1.48832,0,-22.5298 0/1:2:1,1:1:39:1:39:-3.2945,0,-3.2945 dDocent_Contig_16738 33 . A T 626.632 . AB=0.391304;ABP=7.73089;AC=4;AF=0.666667;AN=6;AO=22;CIGAR=1X;DP=50;DPB=50;DPRA=0;EPP=50.7827;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.909091;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=877;QR=1120;RO=28;RPL=0;RPP=50.7827;RPPR=63.8115;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:14,10:14:564:10:397:-28.8616,0,-43.8767 0/1:22:14,8:14:556:8:323:-22.8159,0,-43.7577 1/1:4:0,4:0:0:4:157:-14.5084,-1.20412,0 ./.:.:.:.:.:.:.:. dDocent_Contig_16739 29 . T A 1437.7 . AB=0.561798;ABP=5.96253;AC=4;AF=0.5;AN=8;AO=50;CIGAR=1X;DP=89;DPB=89;DPRA=0;EPP=111.584;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.84;PAIREDR=0.842105;PAO=0;PQA=0;PQR=0;PRO=0;QA=1960;QR=1500;RO=38;RPL=0;RPP=111.584;RPPR=85.5263;RPR=50;RUN=1;SAF=50;SAP=111.584;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:32:15,17:15:577:17:669:-50.9028,0,-42.6246 0/1:22:8,13:8:321:13:499:-38.8008,0,-22.8029 0/1:29:11,18:11:447:18:710:-55.4913,0,-31.856 0/1:6:4,2:4:155:2:82:-5.9735,0,-12.5165 dDocent_Contig_16740 20 . A G 328.701 . AB=0.319149;ABP=16.3625;AC=3;AF=0.375;AN=8;AO=15;CIGAR=1X;DP=53;DPB=53;DPRA=2.61111;EPP=4.31318;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.921053;PAO=0;PQA=0;PQR=0;PRO=0;QA=570;QR=1515;RO=38;RPL=0;RPP=35.5824;RPPR=85.5263;RPR=15;RUN=1;SAF=9;SAP=4.31318;SAR=6;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:14,6:14:570:6:225:-14.5882,0,-45.6214 0/1:15:13,2:13:518:2:79:-2.98179,0,-42.4489 0/1:12:5,7:5:191:7:266:-20.6869,0,-13.9451 0/0:6:6,0:6:236:0:0:0,-1.80618,-21.6113 dDocent_Contig_16742 11 . T A 196.155 . AB=0.264706;ABP=19.3602;AC=2;AF=0.25;AN=8;AO=9;CIGAR=1X;DP=46;DPB=46;DPRA=2.83333;EPP=22.5536;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=363;QR=1475;RO=37;RPL=0;RPP=22.5536;RPPR=83.3548;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:7:7,0:7:282:0:0:0,-2.10721,-25.7521 0/1:27:19,8:19:766:8:322:-21.22,0,-61.1327 0/1:7:6,1:6:243:1:41:-1.98736,0,-20.141 0/0:5:5,0:5:184:0:0:0,-1.50515,-16.9138 dDocent_Contig_16743 8 . A C 877.193 . AB=0.414634;ABP=8.20065;AC=4;AF=0.5;AN=8;AO=34;CIGAR=1X;DP=82;DPB=82;DPRA=0;EPP=76.8404;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=0.823529;PAIREDR=0.958333;PAO=0;PQA=0;PQR=0;PRO=0;QA=1315;QR=1808;RO=48;RPL=0;RPP=76.8404;RPPR=107.241;RPR=34;RUN=1;SAF=34;SAP=76.8404;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:21,15:21:807:15:579:-41.615,0,-62.1186 0/1:27:13,14:13:461:14:541:-40.9079,0,-33.6867 0/1:7:5,2:5:191:2:78:-5.29626,0,-15.4509 0/1:12:9,3:9:349:3:117:-7.29802,0,-28.1585 dDocent_Contig_16744 11 . T A 68.9017 . AB=0.16129;ABP=33.9012;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=62;DPB=62;DPRA=3;EPP=13.8677;EPPR=126.784;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=0;PAIREDR=0.54386;PAO=0;PQA=0;PQR=0;PRO=0;QA=195;QR=2235;RO=57;RPL=0;RPP=13.8677;RPPR=126.784;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:18:18,0:18:705:0:0:0,-5.41854,-63.7732 0/1:31:26,5:26:1029:5:195:-8.58912,0,-83.5692 0/0:6:6,0:6:241:0:0:0,-1.80618,-22.0663 0/0:7:7,0:7:260:0:0:0,-2.10721,-23.747 dDocent_Contig_16745 1 . N G 144.401 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=149;QR=0;RO=0;RPL=0;RPP=11.6962;RPPR=0;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:113:-10.5394,-0.90309,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0 dDocent_Contig_16746 25 . G A 253.013 . AB=0.142857;ABP=10.7656;AC=3;AF=0.5;AN=6;AO=8;CIGAR=1X;DP=20;DPB=20;DPRA=1.16667;EPP=20.3821;EPPR=29.068;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=314;QR=481;RO=12;RPL=0;RPP=20.3821;RPPR=29.068;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=12;SRP=29.068;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:7:6,1:6:241:1:40:-1.88847,0,-19.9591 1/1:7:0,7:0:0:7:274:-25.0256,-2.10721,0 0/0:6:6,0:6:240:0:0:0,-1.80618,-21.9754 ./.:.:.:.:.:.:.:. dDocent_Contig_16748 7 . A C 115.364 . AB=0.25;ABP=22.5536;AC=1;AF=0.125;AN=8;AO=11;CIGAR=1M2I1X3M1X1M2X;DP=134;DPB=136.444;DPRA=3.38889;EPP=26.8965;EPPR=265.758;GTI=0;LEN=1;MEANALT=1.66667;MQM=30.8182;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=431;QR=4720;RO=121;RPL=0;RPP=26.8965;RPPR=265.758;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=121;SRP=265.758;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:37:35,1:35:1358:1:38:0,-7.92023,-119.229 0|0:49:47,1:47:1841:1:40:0,-11.5067,-162.593 0|1:36:27,9:27:1053:9:353:-13.2354,0,-84.2366 0|0:12:12,0:12:468:0:0:0,-3.61236,-42.4719 dDocent_Contig_16749 41 . T A 249.886 . AB=0.357143;ABP=7.97367;AC=1;AF=0.125;AN=8;AO=10;CIGAR=1X;DP=67;DPB=67;DPRA=2.15385;EPP=24.725;EPPR=126.784;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=383;QR=2301;RO=57;RPL=0;RPP=24.725;RPPR=126.784;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:18,10:18:725:10:383:-26.3866,0,-57.1441 0/0:23:23,0:23:927:0:0:0,-6.92369,-83.7337 0/0:9:9,0:9:365:0:0:0,-2.70927,-33.2149 0/0:7:7,0:7:284:0:0:0,-2.10721,-25.9334 dDocent_Contig_16750 19 . T G 145.8 . AB=0.25;ABP=11.6962;AC=4;AF=0.5;AN=8;AO=6;CIGAR=1X;DP=26;DPB=26;DPRA=0.75;EPP=16.0391;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=240;QR=808;RO=20;RPL=0;RPP=16.0391;RPPR=46.4397;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:8:8,0:8:325:0:0:0,-2.40824,-29.6196 0/1:4:3,1:3:120:1:40:-2.79156,0,-9.98319 0/1:12:9,3:9:363:3:118:-7.38922,0,-29.4219 1/1:2:0,2:0:0:2:82:-7.77968,-0.60206,0 dDocent_Contig_16751 82 . T A 1377.62 . AB=0.6125;ABP=11.8048;AC=4;AF=0.5;AN=8;AO=49;CIGAR=2X;DP=80;DPB=80;DPRA=0;EPP=109.412;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1846;QR=1196;RO=31;RPL=49;RPP=109.412;RPPR=70.3259;RPR=0;RUN=1;SAF=49;SAP=109.412;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:28:15,13:15:578:13:491:-36.106,0,-43.9337 0|1:26:9,17:9:349:17:629:-49.1111,0,-23.9441 0|1:14:6,8:6:230:8:303:-23.4144,0,-16.8525 0|1:12:1,11:1:39:11:423:-34.811,0,-0.284204 dDocent_Contig_16752 9 . T G 440.087 . AB=0.30303;ABP=25.2514;AC=4;AF=0.5;AN=8;AO=20;CIGAR=1X;DP=66;DPB=66;DPRA=0;EPP=46.4397;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=766;QR=1769;RO=46;RPL=0;RPP=46.4397;RPPR=102.898;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:13,5:13:500:5:194:-12.4143,0,-39.9292 0/1:23:14,9:14:544:9:346:-24.5757,0,-42.3825 0/1:20:18,2:18:686:2:76:-1.19407,0,-56.0524 0/1:5:1,4:1:39:4:150:-12.3595,0,-2.39141 dDocent_Contig_16753 179 . C T 39.7376 . AB=0.25;ABP=7.35324;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X;DP=21;DPB=21;DPRA=1.84615;EPP=7.35324;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=722;RO=19;RPL=2;RPP=7.35324;RPPR=44.2683;RPR=0;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=44.2683;SRR=19;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:8:6,2:6:234:2:82:-5.37144,0,-19.0206 0/0:6:6,0:6:226:0:0:0,-1.80618,-20.6992 0/0:4:4,0:4:153:0:0:0,-1.20412,-14.1399 0/0:3:3,0:3:109:0:0:0,-0.90309,-10.1662 dDocent_Contig_16754 31 . C G 36.9836 . AB=0.176471;ABP=18.4661;AC=2;AF=0.25;AN=8;AO=3;CIGAR=1X;DP=45;DPB=45;DPRA=0.607143;EPP=9.52472;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=120;QR=1679;RO=42;RPL=0;RPP=9.52472;RPPR=94.2121;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:7,2:7:284:2:82:-5.07041,0,-23.2245 0/0:12:12,0:12:481:0:0:0,-3.61236,-43.6405 0/0:16:16,0:16:631:0:0:0,-4.81648,-57.119 0/1:8:7,1:7:283:1:38:-1.38903,0,-23.4348 dDocent_Contig_16755 107 . N C 92.4814 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=40;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=102;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:102:-9.24759,-0.90309,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_16756 84 . A G 248.605 . AB=0.470588;ABP=3.13803;AC=4;AF=0.5;AN=8;AO=10;CIGAR=1X;DP=25;DPB=25;DPRA=1.05556;EPP=24.725;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=359;QR=549;RO=15;RPL=10;RPP=24.725;RPPR=35.5824;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=15;SRP=35.5824;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:6:6,0:6:220:0:0:0,-1.80618,-20.1555 0/1:14:8,6:8:292:6:219:-15.8496,0,-22.4162 1/1:2:0,2:0:0:2:68:-6.45788,-0.60206,0 0/1:3:1,2:1:37:2:72:-5.93355,0,-2.79474 dDocent_Contig_16757 19 . C A 115.196 . AB=0.285714;ABP=11.386;AC=2;AF=0.25;AN=8;AO=6;CIGAR=1X;DP=74;DPB=74;DPRA=0.396226;EPP=16.0391;EPPR=150.67;GTI=0;LEN=1;MEANALT=1;MQM=43.5;MQMR=55.7941;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=0;PAIREDR=0.838235;PAO=0;PQA=0;PQR=0;PRO=0;QA=241;QR=2742;RO=68;RPL=0;RPP=16.0391;RPPR=150.67;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=68;SRP=150.67;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:30:30,0:30:1223:0:0:0,-9.0309,-101.232 0/0:23:23,0:23:920:0:0:0,-6.92369,-81.9933 0/1:16:11,5:11:435:5:200:-12.669,0,-34.6848 0/1:5:4,1:4:164:1:41:-2.18243,0,-13.6447 dDocent_Contig_16758 209 . N G 104.897 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=40;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=123;QR=0;RO=0;RPL=3;RPP=9.52472;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:123:-10.4891,-0.90309,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_16759 205 . T C 272.778 . AB=0.257143;ABP=20.9405;AC=5;AF=0.625;AN=8;AO=12;CIGAR=1X;DP=38;DPB=38;DPRA=0;EPP=29.068;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=442;QR=916;RO=26;RPL=12;RPP=29.068;RPPR=59.4686;RPR=0;RUN=1;SAF=0;SAP=29.068;SAR=12;SRF=0;SRP=59.4686;SRR=26;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:11,1:11:374:1:37:-0.0854694,0,-30.372 0/1:18:14,4:14:505:4:146:-8.07917,0,-40.3681 0/1:5:1,4:1:37:4:148:-12.1768,0,-2.19268 1/1:3:0,3:0:0:3:111:-10.3539,-0.90309,0 dDocent_Contig_16760 107 . N T 98.8964 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=106;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:106:-9.8891,-0.90309,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_16762 107 . N A 268.596 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=9;CIGAR=1X;DP=9;DPB=9;DPRA=0;EPP=22.5536;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=288;QR=0;RO=0;RPL=0;RPP=22.5536;RPPR=0;RPR=9;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:6:0,6:0:0:6:189:-17.3207,-1.80618,0 1/1:3:0,3:0:0:3:99:-9.23758,-0.90309,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_16764 110 . T G 31.8194 . AB=0.25;ABP=9.52472;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X5M1X;DP=22;DPB=22;DPRA=3.6;EPP=9.52472;EPPR=37.7539;GTI=0;LEN=1;MEANALT=2;MQM=31;MQMR=60;NS=4;NUMALT=2;ODDS=1.73472e-18;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=93;QR=571;RO=16;RPL=0;RPP=9.52472;RPPR=37.7539;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=37.7539;SRR=16;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:1:1,0,0:1:36:0,0:0,0:0,-0.30103,-3.59827,-0.30103,-3.59827,-3.59827 0|1:12:6,3,3:6:212:3,3:98,93:-4.86292,-0.812133,-17.2235,0,-11.4965,-16.4307 0|0:4:4,0,0:4:144:0,0:0,0:0,-1.20412,-13.3136,-1.20412,-13.3136,-13.3136 0|0:5:5,0,0:5:179:0,0:0,0:0,-1.50515,-16.4604,-1.50515,-16.4604,-16.4604 dDocent_Contig_16766 146 . A T 44.308 . AB=0.666667;ABP=3.73412;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X;DP=30;DPB=30;DPRA=0.333333;EPP=7.35324;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=4.33681e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=74;QR=1020;RO=28;RPL=0;RPP=7.35324;RPPR=63.8115;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=63.8115;SRR=28;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:11,0:11:408:0:0:0,-3.31133,-37.068 0/0:11:11,0:11:386:0:0:0,-3.31133,-35.0745 0/0:5:5,0:5:185:0:0:0,-1.50515,-17.01 0/1:3:1,2:1:41:2:74:-6.12279,0,-3.19148 dDocent_Contig_16767 21 . A T 1475.36 . AB=0.0566038;ABP=93.5156;AC=0;AF=0;AN=8;AO=3;CIGAR=1X2M1X;DP=89;DPB=89;DPRA=0;EPP=9.52472;EPPR=74.6689;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=6.93889e-18;PAIRED=1;PAIREDR=0.969697;PAO=0;PQA=0;PQR=0;PRO=0;QA=121;QR=1301;RO=33;RPL=0;RPP=9.52472;RPPR=74.6689;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:13:10,0,2:10:391:0,2:0,81:-3.67877,-6.68907,-38.8267,0,-32.1454,-31.5433 0|0:26:3,2,20:3:120:2,20:80,772:-62.4945,-56.8061,-66.0912,0,-3.29839,-3.87127 0|0:23:9,0,14:9:357:0,14:0,555:-43.3709,-46.0802,-75.468,0,-29.784,-25.5696 0|0:27:11,1,15:11:433:1,15:41,592:-45.3858,-45.3121,-80.6315,0,-32.2206,-31.0906 dDocent_Contig_16768 114 . A C 1759.86 . AB=0.310954;ABP=90.859;AC=3;AF=0.375;AN=8;AO=91;CIGAR=2X;DP=326;DPB=326;DPRA=0;EPP=200.614;EPPR=504.62;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3036;QR=6751;RO=231;RPL=0;RPP=200.614;RPPR=504.62;RPR=91;RUN=1;SAF=0;SAP=200.614;SAR=91;SRF=0;SRP=504.62;SRR=231;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:116:96,19:96:2802:19:643:-23.4858,0,-217.738 0|1:150:81,67:81:2402:67:2225:-155.886,0,-171.808 0|0:43:39,3:39:1104:3:103:0,-3.34406,-90.0286 0|1:17:15,2:15:443:2:65:-1.05578,0,-35.0408 dDocent_Contig_16770 91 . C A 440.304 . AB=0.487805;ABP=3.06326;AC=4;AF=0.5;AN=8;AO=20;CIGAR=1X2M1X;DP=41;DPB=41;DPRA=0;EPP=46.4397;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.95;PAIREDR=0.904762;PAO=0;PQA=0;PQR=0;PRO=0;QA=693;QR=734;RO=21;RPL=20;RPP=46.4397;RPPR=48.6112;RPR=0;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=0;SRP=48.6112;SRR=21;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:20:11,9:11:385:9:313:-22.4865,0,-28.9657 0|1:3:1,2:1:34:2:70:-5.74431,0,-2.49582 0|1:14:7,7:7:245:7:240:-17.7208,0,-18.1768 0|1:4:2,2:2:70:2:70:-5.44328,0,-5.44328 dDocent_Contig_16771 165 . A T 154.414 . AB=0.285714;ABP=8.59409;AC=4;AF=0.5;AN=8;AO=6;CIGAR=1X;DP=20;DPB=20;DPRA=1.33333;EPP=16.0391;EPPR=33.4109;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=242;QR=561;RO=14;RPL=6;RPP=16.0391;RPPR=33.4109;RPR=0;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=33.4109;SRR=14;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:82:-7.77968,-0.60206,0 0/1:6:5,1:5:198:1:38:-1.99109,0,-16.3888 0/1:8:5,3:5:200:3:122:-8.96425,0,-15.9713 0/0:4:4,0:4:163:0:0:0,-1.20412,-15.0584 dDocent_Contig_16772 75 . T C 1120.53 . AB=0.1;ABP=58.6;AC=0;AF=0;AN=8;AO=4;CIGAR=13M1X3M3D1M;DP=101;DPB=129.81;DPRA=0;EPP=11.6962;EPPR=59.4686;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=4;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=142;QR=962;RO=26;RPL=4;RPP=11.6962;RPPR=59.4686;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:37:10,0,10,14,0:10:376:0,10,14,0:0,315,456,0:-33.8032,-36.8135,-67.6355,-11.4895,-42.3159,-39.3056,0,-30.8337,-5.52676,-26.6193,-36.8135,-67.6355,-42.3159,-30.8337,-67.6355 0|0:21:4,0,8,9,0:4:141:0,8,9,0:0,257,318,0:-33.9132,-35.1174,-46.5993,-14.4196,-25.8985,-23.4903,-9.20249,-20.6921,0,-17.9828,-35.1174,-46.5993,-25.8985,-20.6921,-46.5993 0|0:40:12,4,6,17,0:12:445:4,6,17,0:142,190,568,0:-42.3665,-34.4058,-69.6267,-30.6952,-55.5477,-65.3118,0,-24.8597,-21.1542,-31.3121,-45.9788,-70.8308,-67.118,-36.4296,-82.4016 0|0:3:0,0,1,0,2:0:0:0,1,0,2:0,39,0,71:-9.35748,-9.35748,-9.35748,-6.14,-6.14,-5.83897,-9.35748,-9.35748,-6.14,-9.35748,-3.59553,-3.59553,0,-3.59553,-2.99347 dDocent_Contig_16773 163 . G T 65.7094 . AB=0.333333;ABP=5.18177;AC=1;AF=0.25;AN=4;AO=3;CIGAR=1X;DP=16;DPB=16;DPRA=1.28571;EPP=9.52472;EPPR=31.2394;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=121;QR=494;RO=13;RPL=3;RPP=9.52472;RPPR=31.2394;RPR=0;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=31.2394;SRR=13;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 0/0:7:7,0:7:260:0:0:0,-2.10721,-23.7477 0/1:9:6,3:6:234:3:121:-8.57093,0,-18.7165 ./.:.:.:.:.:.:.:. dDocent_Contig_16774 46 . T C 1080.91 . AB=0.722222;ABP=10.7311;AC=5;AF=0.625;AN=8;AO=34;CIGAR=1X;DP=49;DPB=49;DPRA=1.48148;EPP=76.8404;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1304;QR=578;RO=15;RPL=0;RPP=76.8404;RPPR=35.5824;RPR=34;RUN=1;SAF=34;SAP=76.8404;SAR=0;SRF=15;SRP=35.5824;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:7:0,7:0:0:7:272:-24.8462,-2.10721,0 0/0:9:9,0:9:353:0:0:0,-2.70927,-32.1316 0/1:18:5,13:5:190:13:506:-40.4655,0,-12.0467 1/1:15:1,14:1:35:14:526:-44.1774,-1.01682,0 dDocent_Contig_16775 90 . T G 757.002 . AB=0.551724;ABP=3.68421;AC=6;AF=0.75;AN=8;AO=30;CIGAR=1X;DP=43;DPB=43;DPRA=0;EPP=68.1545;EPPR=31.2394;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=962;QR=440;RO=13;RPL=30;RPP=68.1545;RPPR=31.2394;RPR=0;RUN=1;SAF=30;SAP=68.1545;SAR=0;SRF=13;SRP=31.2394;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:8,10:8:268:10:333:-24.8749,0,-19.0289 0/1:11:5,6:5:172:6:186:-13.7324,0,-12.5071 1/1:7:0,7:0:0:7:214:-19.56,-2.10721,0 1/1:7:0,7:0:0:7:229:-20.9308,-2.10721,0 dDocent_Contig_16776 17 . A T 167.55 . AB=0.461538;ABP=3.17734;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=37;DPB=37;DPRA=1.625;EPP=16.0391;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=241;QR=1260;RO=31;RPL=0;RPP=16.0391;RPPR=70.3259;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:7,6:7:284:6:241:-18.1524,0,-22.02 0/0:15:15,0:15:612:0:0:0,-4.51545,-55.4171 0/0:1:1,0:1:41:0:0:0,-0.30103,-4.09457 0/0:8:8,0:8:323:0:0:0,-2.40824,-29.4384 dDocent_Contig_16777 7 . A T 198.345 . AB=0.135338;ABP=156.63;AC=2;AF=0.25;AN=8;AO=22;CIGAR=1X;DP=228;DPB=228;DPRA=1.90196;EPP=50.7827;EPPR=450.334;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.8447;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=0.318182;PAIREDR=0.708738;PAO=0;PQA=0;PQR=0;PRO=0;QA=847;QR=7891;RO=206;RPL=0;RPP=50.7827;RPPR=450.334;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=206;SRP=450.334;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:59:49,10:49:1882:10:389:-17.6076,0,-151.867 0/1:74:66,8:66:2512:8:306:-5.62479,0,-203.941 0/0:61:57,4:57:2184:4:152:0,-4.31363,-182.737 0/0:34:34,0:34:1313:0:0:0,-10.235,-118.302 dDocent_Contig_16778 8 . A T 101.97 . AB=0.285714;ABP=5.80219;AC=2;AF=0.25;AN=8;AO=2;CIGAR=2X2M;DP=58;DPB=58;DPRA=0.666667;EPP=7.35324;EPPR=98.5551;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=58.7727;NS=4;NUMALT=4;ODDS=0;PAIRED=0;PAIREDR=0.795455;PAO=0;PQA=0;PQR=0;PRO=0;QA=68;QR=1694;RO=44;RPL=0;RPP=7.35324;RPPR=98.5551;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:17:16,0,0,1,0:16:616:0,0,1,0:0,0,36,0:0,-4.81648,-55.1289,-4.81648,-55.1289,-55.1289,-1.81849,-52.4639,-52.4639,-52.1629,-4.81648,-55.1289,-55.1289,-52.4639,-55.1289 0|0:30:23,0,0,2,5:23:886:0,0,2,5:0,0,65,145:-4.61374,-11.5374,-84.17,-11.5374,-84.17,-84.17,-6.82962,-79.4685,-79.4685,-78.8664,0,-72.6435,-72.6435,-67.9443,-71.1384 1|1:7:1,3,2,0,0:1:39:3,2,0,0:106,68,0,0:-8.97981,-2.291,-4.60915,-3.75027,0,-6.37283,-9.28084,-5.51224,-6.97489,-12.498,-9.28084,-5.51224,-6.97489,-12.498,-12.498 0|0:4:4,0,0,0,0:4:153:0,0,0,0:0,0,0,0:0,-1.20412,-14.1414,-1.20412,-14.1414,-14.1414,-1.20412,-14.1414,-14.1414,-14.1414,-1.20412,-14.1414,-14.1414,-14.1414,-14.1414 dDocent_Contig_16779 10 . C A 129.281 . AB=0.3;ABP=9.95901;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=25;DPB=25;DPRA=2;EPP=16.0391;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=241;QR=762;RO=19;RPL=0;RPP=16.0391;RPPR=44.2683;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:10,2:10:395:2:82:-4.16732,0,-32.2916 0/0:5:5,0:5:203:0:0:0,-1.50515,-18.6531 0/1:8:4,4:4:164:4:159:-12.2826,0,-12.7417 ./.:.:.:.:.:.:.:. dDocent_Contig_16780 124 . C A 155.982 . AB=0.318182;ABP=9.32731;AC=4;AF=0.5;AN=8;AO=9;CIGAR=1X;DP=38;DPB=38;DPRA=0;EPP=22.5536;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=307;QR=984;RO=29;RPL=0;RPP=22.5536;RPPR=65.983;RPR=9;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=65.983;SRR=29;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:9,5:9:277:5:169:-11.3272,0,-21.0157 0/0:15:14,1:14:487:1:34:0,-1.11654,-40.7623 0/1:8:6,2:6:220:2:64:-3.67031,0,-17.7432 1/1:1:0,1:0:0:1:40:-3.99568,-0.30103,0 dDocent_Contig_16781 82 . T C 41.6185 . AB=0.181818;ABP=22.3561;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=68;DPB=68;DPRA=1.43478;EPP=11.6962;EPPR=141.985;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.96875;PAO=0;PQA=0;PQR=0;PRO=0;QA=135;QR=2243;RO=64;RPL=4;RPP=11.6962;RPPR=141.985;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=64;SRP=141.985;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:18:18,0:18:632:0:0:0,-5.41854,-57.2067 0/0:16:16,0:16:547:0:0:0,-4.81648,-49.5496 0/1:22:18,4:18:637:4:135:-5.86079,0,-51.036 0/0:12:12,0:12:427:0:0:0,-3.61236,-38.7686 dDocent_Contig_16782 42 . T C 4594.06 . AB=0.107759;ABP=313.044;AC=1;AF=0.125;AN=8;AO=25;CIGAR=4M1X5M1X1M3I2M1X2M2X;DP=259;DPB=289.316;DPRA=0;EPP=57.2971;EPPR=50.7827;GTI=0;LEN=1;MEANALT=7;MQM=60;MQMR=60;NS=4;NUMALT=6;ODDS=0;PAIRED=0.92;PAIREDR=0.954545;PAO=0;PQA=0;PQR=0;PRO=0;QA=968;QR=835;RO=22;RPL=0;RPP=57.2971;RPPR=50.7827;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:96:6,0,4,7,39,0,32:6:237:0,4,7,39,0,32:0,155,264,1503,0,1219:-202.09,-203.897,-223.4,-191.163,-210.666,-209.462,-182.263,-201.766,-189.033,-199.659,-80.4839,-99.9886,-87.2543,-78.3547,-88.2484,-203.897,-223.4,-210.666,-201.766,-99.9886,-223.4,-103.91,-123.414,-110.68,-101.78,0,-123.414,-113.781 0|0:88:9,9,6,12,35,1,13:9:338:9,6,12,35,1,13:345,221,467,1361,40,499:-122.408,-96.8049,-121.782,-107.049,-106.423,-132.929,-86.7368,-86.1105,-96.355,-110.81,-13.2714,-12.6446,-22.8899,-2.57536,-30.4216,-121.822,-121.195,-131.44,-111.127,-37.6621,-149.207,-84.161,-83.5347,-93.7791,-73.4665,0,-108.552,-107.933 1|0:48:6,0,0,6,4,0,30:6:220:0,0,6,4,0,30:0,0,237,155,0,1157:-94.7322,-96.5384,-114.517,-96.5384,-114.517,-114.517,-77.0341,-95.0126,-95.0126,-93.2065,-83.8042,-101.783,-101.783,-82.278,-100.578,-96.5384,-114.517,-114.517,-95.0126,-101.783,-114.517,-1.53578,-19.5092,-19.5092,0,-6.77358,-19.5092,-10.4783 0|0:27:1,6,1,0,6,2,10:1:40:6,1,0,6,2,10:234,39,0,231,79,388:-47.516,-28.582,-30.0714,-44.6111,-28.6717,-47.6055,-47.817,-31.8776,-47.9066,-51.1125,-28.8525,-12.9136,-28.9422,-32.1481,-30.3419,-41.3155,-25.376,-41.4051,-44.6111,-25.6466,-44.009,-15.939,0,-16.0288,-19.2347,-0.271744,-12.733,-16.2244 dDocent_Contig_16783 108 . G A 781.088 . AB=0.557377;ABP=4.7546;AC=4;AF=0.5;AN=8;AO=34;CIGAR=1X;DP=61;DPB=61;DPRA=0;EPP=76.8404;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1139;QR=903;RO=27;RPL=0;RPP=76.8404;RPPR=61.6401;RPR=34;RUN=1;SAF=0;SAP=76.8404;SAR=34;SRF=0;SRP=61.6401;SRR=27;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:16,8:16:532:8:255:-16.0373,0,-40.9711 0/1:23:6,17:6:198:17:588:-46.3226,0,-11.2208 0/1:10:4,6:4:140:6:202:-15.5006,0,-9.93463 0/1:4:1,3:1:33:3:94:-7.56679,0,-2.09501 dDocent_Contig_16784 48 . C T 183.565 . AB=0.222222;ABP=21.1059;AC=4;AF=0.5;AN=8;AO=8;CIGAR=1X;DP=49;DPB=49;DPRA=0.483333;EPP=20.3821;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=314;QR=1628;RO=41;RPL=0;RPP=20.3821;RPPR=92.0407;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:20:20,0:20:793:0:0:0,-6.0206,-71.6925 0/1:20:18,2:18:717:2:80:-1.57098,0,-58.8384 1/1:2:0,2:0:0:2:79:-7.49763,-0.60206,0 0/1:7:3,4:3:118:4:155:-12.2179,0,-8.8953 dDocent_Contig_16785 118 . A T 3679.45 . AB=0.772973;ABP=122.746;AC=5;AF=0.625;AN=8;AO=185;CIGAR=1X;DP=231;DPB=231;DPRA=0;EPP=404.733;EPPR=100.727;GTI=0;LEN=1;MEANALT=1.25;MQM=27.8054;MQMR=57.9333;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.822222;PAO=0;PQA=0;PQR=0;PRO=0;QA=6223;QR=1605;RO=45;RPL=0;RPP=404.733;RPPR=100.727;RPR=185;RUN=1;SAF=0;SAP=404.733;SAR=185;SRF=0;SRP=100.727;SRR=45;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:90:26,64:26:924:64:2181:-126.609,0,-56.3362 0/1:49:5,43:5:179:43:1402:-85.4741,0,-1.62873 0/1:46:10,36:10:359:36:1203:-71.7087,0,-18.6216 1/1:46:4,42:4:143:42:1437:-89.1358,-0.625935,0 dDocent_Contig_16786 86 . T A 414.348 . AB=0.38;ABP=9.26414;AC=3;AF=0.5;AN=6;AO=19;CIGAR=1X;DP=50;DPB=50;DPRA=0;EPP=44.2683;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=676;QR=984;RO=31;RPL=19;RPP=44.2683;RPPR=70.3259;RPR=0;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=0;SRP=70.3259;SRR=31;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:21,7:21:651:7:249:-14.3267,0,-50.4513 ./.:.:.:.:.:.:.:. 0/1:17:9,8:9:298:8:285:-20.8771,0,-22.0254 0/1:5:1,4:1:35:4:142:-11.6241,0,-1.99348 dDocent_Contig_16787 34 . A G 642.658 . AB=0.384615;ABP=10.5269;AC=4;AF=0.5;AN=8;AO=25;CIGAR=1X;DP=65;DPB=65;DPRA=0;EPP=57.2971;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=997;QR=1585;RO=40;RPL=0;RPP=57.2971;RPPR=89.8692;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:7,3:7:281:3:122:-8.36219,0,-22.6525 0/1:23:11,12:11:435:12:474:-36.0856,0,-32.5811 0/1:23:18,5:18:717:5:204:-11.8203,0,-57.9333 0/1:9:4,5:4:152:5:197:-15.3956,0,-11.3403 dDocent_Contig_16788 10 . A C 217.355 . AB=0.117647;ABP=24.5973;AC=3;AF=0.5;AN=6;AO=2;CIGAR=1X3M;DP=41;DPB=41;DPRA=0;EPP=7.35324;EPPR=61.6401;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0.925926;PAO=0;PQA=0;PQR=0;PRO=0;QA=79;QR=1068;RO=27;RPL=0;RPP=7.35324;RPPR=61.6401;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:17:13,2,2:13:518:2,2:69,79:-2.61206,-0.944581,-43.0028,0,-37.1047,-42.1013 0|1:17:13,4,0:13:510:4,0:153,0:-7.44597,0,-41.1299,-11.3594,-42.334,-53.3415 0|1:7:1,6,0:1:40:6,0:208,0:-16.9498,0,-1.88847,-17.2508,-3.69465,-20.5535 .:.:.:.:.:.:.:. dDocent_Contig_16789 125 . A G 313.305 . AB=0.384615;ABP=7.52028;AC=2;AF=0.25;AN=8;AO=15;CIGAR=1X;DP=55;DPB=55;DPRA=2.4375;EPP=35.5824;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.925;PAO=0;PQA=0;PQR=0;PRO=0;QA=509;QR=1366;RO=40;RPL=0;RPP=35.5824;RPPR=89.8692;RPR=15;RUN=1;SAF=0;SAP=35.5824;SAR=15;SRF=0;SRP=89.8692;SRR=40;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:9:9,0:9:307:0:0:0,-2.70927,-27.9616 0/1:14:3,11:3:104:11:376:-29.9552,0,-5.48867 0/1:25:21,4:21:722:4:133:-4.77301,0,-57.7741 0/0:7:7,0:7:233:0:0:0,-2.10721,-21.296 dDocent_Contig_16791 24 . G T 174.877 . AB=0.238095;ABP=28.0339;AC=2;AF=0.25;AN=8;AO=10;CIGAR=1X2M1X;DP=57;DPB=57;DPRA=2.8;EPP=24.725;EPPR=94.2121;GTI=0;LEN=1;MEANALT=2;MQM=57.9;MQMR=55.6667;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.880952;PAO=0;PQA=0;PQR=0;PRO=0;QA=359;QR=1618;RO=42;RPL=0;RPP=24.725;RPPR=94.2121;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:21:16,5,0:16:616:5,0:173,0:-9.53571,0,-49.4531,-14.3522,-50.9582,-64.9562 0|1:21:13,5,2:13:496:5,2:186,82:-11.3499,0,-35.9075,-11.239,-33.3711,-47.9951 0|0:6:6,0,0:6:230:0,0:0,0:0,-1.80618,-21.0659,-1.80618,-21.0659,-21.0659 0|0:9:7,0,2:7:276:0,2:0,82:0,-2.10721,-21.6928,-1.37953,-21.0953,-20.4932 dDocent_Contig_16792 40 . C A 172.142 . AB=0.217391;ABP=34.9215;AC=3;AF=0.375;AN=8;AO=10;CIGAR=1X;DP=65;DPB=65;DPRA=0.807018;EPP=24.725;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.945455;PAO=0;PQA=0;PQR=0;PRO=0;QA=392;QR=2130;RO=55;RPL=0;RPP=24.725;RPPR=122.441;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:17,5:17:644:5:193:-11.1149,0,-51.653 0/0:19:19,0:19:750:0:0:0,-5.71957,-67.8203 0/1:17:15,2:15:573:2:80:-2.47407,0,-46.7862 0/1:7:4,3:4:163:3:119:-8.98818,0,-12.9512 dDocent_Contig_16794 67 . A T 339.716 . AB=0.193548;ABP=53.5846;AC=5;AF=0.625;AN=8;AO=19;CIGAR=1X;DP=70;DPB=70;DPRA=0;EPP=44.2683;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.210526;PAIREDR=0.745098;PAO=0;PQA=0;PQR=0;PRO=0;QA=639;QR=1761;RO=51;RPL=17;RPP=28.7251;RPPR=8.16222;RPR=2;RUN=1;SAF=17;SAP=28.7251;SAR=2;SRF=31;SRP=8.16222;SRR=20;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:7,3:7:247:3:101:-6.41302,0,-19.5628 1/1:8:1,7:1:8:7:245:-21.591,-1.60824,0 0/1:22:17,5:17:577:5:159:-8.00084,0,-45.6235 0/1:30:26,4:26:929:4:134:-3.35991,0,-74.8963 dDocent_Contig_16795 16 . C G 149.413 . AB=0.2;ABP=38.1882;AC=2;AF=0.25;AN=8;AO=9;CIGAR=1X;DP=110;DPB=110;DPRA=0.692308;EPP=22.5536;EPPR=222.329;GTI=0;LEN=1;MEANALT=1;MQM=59.6667;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.333333;PAIREDR=0.623762;PAO=0;PQA=0;PQR=0;PRO=0;QA=346;QR=4074;RO=101;RPL=0;RPP=22.5536;RPPR=222.329;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=101;SRP=222.329;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:18,6:18:712:6:223:-13.196,0,-57.1774 0/0:26:26,0:26:1051:0:0:0,-7.82678,-94.8777 0/0:39:39,0:39:1592:0:0:0,-11.7402,-143.504 0/1:21:18,3:18:719:3:123:-5.14316,0,-58.7098 dDocent_Contig_16796 187 . G A 46.886 . AB=0.5;ABP=3.0103;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X3M1X;DP=31;DPB=31;DPRA=0.444444;EPP=7.35324;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=80;QR=1109;RO=28;RPL=2;RPP=7.35324;RPPR=63.8115;RPR=0;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=63.8115;SRR=28;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:5:5,0:5:199:0:0:0,-1.50515,-18.2886 0|0:15:14,0:14:561:0:0:0,-4.21442,-50.6394 0|0:7:7,0:7:281:0:0:0,-2.10721,-25.6628 0|1:4:2,2:2:68:2:80:-6.38745,0,-5.25152 dDocent_Contig_16797 31 . C T 138.769 . AB=0.16129;ABP=64.7922;AC=2;AF=0.25;AN=8;AO=10;CIGAR=1X;DP=107;DPB=107;DPRA=1.37778;EPP=24.725;EPPR=213.643;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=385;QR=3873;RO=97;RPL=0;RPP=24.725;RPPR=213.643;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=97;SRP=213.643;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:24,7:24:946:7:269:-15.2428,0,-76.102 0/0:32:32,0:32:1264:0:0:0,-9.63296,-114.03 0/1:31:28,3:28:1133:3:116:-1.48577,0,-92.9168 0/0:13:13,0:13:530:0:0:0,-3.91339,-48.0466 dDocent_Contig_16799 19 . C A 534.007 . AB=0.210526;ABP=99.8123;AC=4;AF=0.5;AN=8;AO=28;CIGAR=1X;DP=133;DPB=133;DPRA=0;EPP=63.8115;EPPR=231.015;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1104;QR=4197;RO=105;RPL=0;RPP=63.8115;RPPR=231.015;RPR=28;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=105;SRP=231.015;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:53:42,11:42:1672:11:435:-23.5494,0,-134.754 0/1:40:33,7:33:1316:7:276:-13.1673,0,-106.667 0/1:27:21,6:21:850:6:232:-13.1201,0,-68.6835 0/1:13:9,4:9:359:4:161:-10.9619,0,-28.7592 dDocent_Contig_16800 15 . A T 257.069 . AB=0.473684;ABP=3.12459;AC=1;AF=0.125;AN=8;AO=10;CIGAR=1X;DP=84;DPB=84;DPRA=0.647059;EPP=24.725;EPPR=163.699;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.7568;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.932432;PAO=0;PQA=0;PQR=0;PRO=0;QA=403;QR=2906;RO=74;RPL=0;RPP=24.725;RPPR=163.699;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=74;SRP=163.699;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:26:26,0:26:1022:0:0:0,-7.82678,-92.2421 0/0:25:25,0:25:976:0:0:0,-7.52575,-88.1399 0/1:19:10,9:10:401:9:364:-27.4054,0,-30.7307 0/0:14:13,1:13:507:1:39:0,-0.317855,-42.0778 dDocent_Contig_16803 12 . A T 61.0649 . AB=0.09375;ABP=48.8827;AC=2;AF=0.25;AN=8;AO=3;CIGAR=2X;DP=50;DPB=50;DPRA=1.77778;EPP=9.52472;EPPR=92.0407;GTI=0;LEN=1;MEANALT=2;MQM=40;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0.512195;PAO=0;PQA=0;PQR=0;PRO=0;QA=123;QR=1638;RO=41;RPL=0;RPP=9.52472;RPPR=92.0407;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:21:15,4,2:15:595:4,2:159,82:-7.49913,0,-47.789,-5.8712,-42.8548,-54.2661 0|0:10:10,0,0:10:408:0,0:0,0:0,-3.0103,-37.0806,-3.0103,-37.0806,-37.0806 0|1:11:9,1,1:9:363:1,1:41,41:-0.361206,0,-29.6469,0,-26.8803,-29.6469 0|0:8:7,1,0:7:272:1,0:40,0:0,-0.511633,-22.9447,-2.10721,-23.2458,-24.6269 dDocent_Contig_16805 55 . T C 98.0942 . AB=0.416667;ABP=3.73412;AC=3;AF=0.375;AN=8;AO=5;CIGAR=1X;DP=18;DPB=18;DPRA=0.666667;EPP=13.8677;EPPR=31.2394;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=196;QR=504;RO=13;RPL=5;RPP=13.8677;RPPR=31.2394;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=13;SRP=31.2394;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:7:5,2:5:198:2:78:-5.29609,0,-16.089 0/0:6:6,0:6:226:0:0:0,-1.80618,-20.696 0/1:3:1,2:1:40:2:78:-6.50038,0,-3.09259 0/1:2:1,1:1:40:1:40:-3.39362,0,-3.39362 dDocent_Contig_16806 19 . G C 355.796 . AB=0.0689655;ABP=49.8093;AC=0;AF=0;AN=8;AO=2;CIGAR=1M1I7M1X;DP=79;DPB=81.2222;DPRA=14.5;EPP=7.35324;EPPR=126.784;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=75;QR=2253;RO=57;RPL=0;RPP=7.35324;RPPR=126.784;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:29:22,2,5:22:865:2,5:75,203:-10.1417,-10.6296,-81.1641,0,-65.0214,-69.6583 0|0:43:30,0,11:30:1189:0,11:0,418:-25.2208,-34.2517,-132.126,0,-97.862,-94.5507 0|0:5:3,0,2:3:118:0,2:0,75:-5.61444,-6.51753,-16.2352,0,-10.0996,-9.49757 0|0:2:2,0,0:2:81:0,0:0,0:0,-0.60206,-7.68573,-0.60206,-7.68573,-7.68573 dDocent_Contig_16807 37 . C T 413.123 . AB=0.206349;ABP=50.1967;AC=4;AF=0.5;AN=8;AO=17;CIGAR=1X;DP=72;DPB=72;DPRA=4.46667;EPP=39.9253;EPPR=120.27;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=692;QR=2109;RO=54;RPL=0;RPP=39.9253;RPPR=120.27;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:4:0,4:0:0:4:164:-15.1499,-1.20412,0 0/1:19:17,2:17:671:2:81:-1.96616,0,-54.9941 0/1:44:32,11:32:1242:11:447:-27.4699,0,-98.9514 0/0:5:5,0:5:196:0:0:0,-1.50515,-18.0145 dDocent_Contig_16808 9 . T C 755.75 . AB=0.491525;ABP=3.0471;AC=3;AF=0.375;AN=8;AO=30;CIGAR=1X1M;DP=73;DPB=73;DPRA=0;EPP=68.1545;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1.75;MQM=50.4667;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.533333;PAIREDR=0.694444;PAO=0;PQA=0;PQR=0;PRO=0;QA=1147;QR=1411;RO=36;RPL=0;RPP=68.1545;RPPR=81.1833;RPR=30;RUN=1;SAF=30;SAP=68.1545;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:21:8,4,9:8:315:4,9:153,340:-23.4087,-13.5143,-38.2439,0,-13.6371,-23.2175 0|1:19:7,0,12:7:276:0,12:0,462:-35.1695,-37.2767,-59.9922,0,-23.1025,-19.4901 0|1:19:9,2,8:9:350:2,8:80,306:-22.3943,-18.6792,-46.8421,0,-22.3372,-26.352 0|0:14:12,0,1:12:470:0,1:0,39:0,-3.61236,-42.2613,-0.406788,-39.0555,-38.7545 dDocent_Contig_16809 109 . C T 259.964 . AB=0.52381;ABP=3.1137;AC=1;AF=0.125;AN=8;AO=11;CIGAR=1X;DP=36;DPB=36;DPRA=4.2;EPP=26.8965;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=371;QR=857;RO=25;RPL=0;RPP=26.8965;RPPR=57.2971;RPR=11;RUN=1;SAF=0;SAP=26.8965;SAR=11;SRF=0;SRP=57.2971;SRR=25;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:10,11:10:349:11:371:-27.3941,0,-25.4252 0/0:4:4,0:4:139:0:0:0,-1.20412,-12.8527 0/0:8:8,0:8:265:0:0:0,-2.40824,-24.1725 0/0:3:3,0:3:104:0:0:0,-0.90309,-9.70309 dDocent_Contig_16810 30 . C T 285.849 . AB=0;ABP=0;AC=2;AF=0.25;AN=8;AO=8;CIGAR=1X;DP=48;DPB=48;DPRA=0.6;EPP=20.3821;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=307;QR=1591;RO=40;RPL=0;RPP=20.3821;RPPR=89.8692;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:8:0,8:0:0:8:307:-27.9828,-2.40824,0 0/0:15:15,0:15:592:0:0:0,-4.51545,-53.615 0/0:20:20,0:20:795:0:0:0,-6.0206,-71.8686 0/0:5:5,0:5:204:0:0:0,-1.50515,-18.744 dDocent_Contig_16812 12 . G A 160.821 . AB=0.6;ABP=3.87889;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=45;DPB=45;DPRA=0.857143;EPP=16.0391;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=8.67362e-19;PAIRED=0;PAIREDR=0.948718;PAO=0;PQA=0;PQR=0;PRO=0;QA=227;QR=1532;RO=39;RPL=0;RPP=16.0391;RPPR=87.6977;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:7:7,0:7:286:0:0:0,-2.10721,-26.1148 0/0:14:14,0:14:558:0:0:0,-4.21442,-50.5621 0/1:10:4,6:4:155:6:227:-17.7811,0,-11.3124 0/0:14:14,0:14:533:0:0:0,-4.21442,-48.3035 dDocent_Contig_16813 16 . T C 577.909 . AB=0.512821;ABP=3.06598;AC=1;AF=0.25;AN=4;AO=20;CIGAR=2X;DP=44;DPB=44;DPRA=7.8;EPP=46.4397;EPPR=52.9542;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=789;QR=897;RO=23;RPL=0;RPP=46.4397;RPPR=52.9542;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:39:18,20:18:696:20:789:-59.4898,0,-51.1233 0|0:5:5,0:5:201:0:0:0,-1.50515,-18.4709 .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. dDocent_Contig_16814 85 . A T 80.2826 . AB=0.277778;ABP=10.7311;AC=2;AF=0.25;AN=8;AO=7;CIGAR=1X;DP=70;DPB=70;DPRA=0.894737;EPP=18.2106;EPPR=139.813;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=253;QR=2257;RO=63;RPL=7;RPP=18.2106;RPPR=139.813;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=63;SRP=139.813;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:19:19,0:19:687:0:0:0,-5.71957,-62.1565 0/1:15:12,3:12:407:3:111:-5.83847,0,-32.4349 0/0:33:31,2:31:1129:2:74:0,-2.90811,-94.8931 0/1:3:1,2:1:34:2:68:-5.55433,0,-2.49582 dDocent_Contig_16815 201 . A G 315.373 . AB=0.285714;ABP=14.1779;AC=4;AF=0.5;AN=8;AO=13;CIGAR=1X;DP=37;DPB=37;DPRA=2.75;EPP=31.2394;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=470;QR=886;RO=24;RPL=13;RPP=31.2394;RPPR=55.1256;RPR=0;RUN=1;SAF=0;SAP=31.2394;SAR=13;SRF=0;SRP=55.1256;SRR=24;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:13,4:13:494:4:146:-8.3802,0,-39.6868 0/0:4:4,0:4:136:0:0:0,-1.20412,-12.5749 0/1:11:7,4:7:256:4:148:-10.3706,0,-20.0816 1/1:5:0,5:0:0:5:176:-16.1843,-1.50515,0 dDocent_Contig_16816 84 . G T 519.034 . AB=0.333333;ABP=23.2774;AC=3;AF=0.375;AN=8;AO=31;CIGAR=2X;DP=123;DPB=123;DPRA=0;EPP=70.3259;EPPR=198.443;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1014;QR=3220;RO=90;RPL=31;RPP=70.3259;RPPR=198.443;RPR=0;RUN=1;SAF=31;SAP=70.3259;SAR=0;SRF=90;SRP=198.443;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:39:36,3:36:1288:3:108:0,-1.66579,-106.139 0|1:27:18,8:18:649:8:276:-17.1594,0,-50.7333 0|1:31:14,16:14:483:16:495:-35.4848,0,-34.4294 0|1:26:22,4:22:800:4:135:-4.6569,0,-64.4979 dDocent_Contig_16818 17 . C T 126.689 . AB=0.4;ABP=3.87889;AC=3;AF=0.5;AN=6;AO=4;CIGAR=2X3M;DP=17;DPB=17;DPRA=2.85714;EPP=11.6962;EPPR=24.725;GTI=0;LEN=1;MEANALT=2;MQM=44.25;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=152;QR=394;RO=10;RPL=0;RPP=11.6962;RPPR=24.725;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=10;SRP=24.725;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:2:0,2,0:0:0:2,0:81,0:-3.7927,-0.60206,0,-3.7927,-0.60206,-3.7927 0|0:5:5,0,0:5:195:0,0:0,0:0,-1.50515,-17.9228,-1.50515,-17.9228,-17.9228 0|1:10:5,0,4:5:199:0,4:0,152:-10.3982,-11.9034,-28.3024,0,-16.3846,-15.1804 .:.:.:.:.:.:.:. dDocent_Contig_16819 7 . A G 525.138 . AB=0.391304;ABP=10.0912;AC=4;AF=0.5;AN=8;AO=27;CIGAR=1X;DP=69;DPB=69;DPRA=0;EPP=61.6401;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=882;QR=1614;RO=42;RPL=0;RPP=61.6401;RPPR=94.2121;RPR=27;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:6,17:6:234:17:544:-42.3328,0,-14.5074 0/1:15:12,3:12:462:3:86:-3.5089,0,-37.4158 0/1:21:18,3:18:687:3:96:-2.6355,0,-55.8417 0/1:10:6,4:6:231:4:156:-11.407,0,-18.1476 dDocent_Contig_16820 16 . A G 177.985 . AB=0.189189;ABP=34.0565;AC=3;AF=0.375;AN=8;AO=8;CIGAR=1X2M;DP=79;DPB=79;DPRA=0;EPP=20.3821;EPPR=148.499;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=310;QR=2655;RO=67;RPL=0;RPP=20.3821;RPPR=148.499;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=67;SRP=148.499;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:22:16,0,6:16:639:0,6:0,243:-15.6255,-20.442,-73.0675,0,-53.0285,-51.2223 0|0:32:31,0,1:31:1221:0,1:0,27:0,-9.33193,-109.896,-6.93318,-107.771,-107.47 0|1:15:12,2,1:12:475:2,1:80,40:-2.9778,0,-38.4883,-3.29508,-35.7949,-42.0846 0|1:10:8,2,0:8:320:2,0:80,0:-4.58149,0,-26.158,-6.98973,-26.76,-33.3502 dDocent_Contig_16821 35 . A G 224.679 . AB=0.391304;ABP=5.3706;AC=2;AF=0.25;AN=8;AO=9;CIGAR=1X;DP=92;DPB=92;DPRA=0.333333;EPP=22.5536;EPPR=183.243;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=0.666667;PAIREDR=0.662651;PAO=0;PQA=0;PQR=0;PRO=0;QA=356;QR=3269;RO=83;RPL=0;RPP=22.5536;RPPR=183.243;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=83;SRP=183.243;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:35:35,0:35:1343:0:0:0,-10.536,-121.124 0/0:34:34,0:34:1365:0:0:0,-10.235,-123.11 0/1:11:9,2:9:365:2:77:-3.99687,0,-29.9037 0/1:12:5,7:5:196:7:279:-21.8679,0,-14.4007 dDocent_Contig_16822 19 . A G 3000.39 . AB=0.0833333;ABP=39.2015;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X3M1X;DP=112;DPB=112;DPRA=2.18182;EPP=7.35324;EPPR=46.4397;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=79;QR=798;RO=20;RPL=0;RPP=7.35324;RPPR=46.4397;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:39:12,0,27:12:476:0,27:0,1088:-86.4661,-90.0785,-129.259,0,-39.5783,-31.4505 0|0:38:8,0,30:8:322:0,30:0,1212:-97.911,-100.319,-126.858,0,-26.9407,-17.9098 1|0:24:0,2,22:0:0:2,22:79,892:-80.4637,-73.964,-73.3619,-6.89518,0,-0.272524 0|0:11:0,0,11:0:0:0,11:0,428:-38.8669,-38.8669,-38.8669,-3.31133,-3.31133,0 dDocent_Contig_16824 18 . G A 127.678 . AB=0.8;ABP=6.91895;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=61;DPB=61;DPRA=0.267857;EPP=11.6962;EPPR=126.784;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=164;QR=2223;RO=57;RPL=0;RPP=11.6962;RPPR=126.784;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:22:22,0:22:886:0:0:0,-6.62266,-80.0484 0/0:15:15,0:15:592:0:0:0,-4.51545,-53.6159 0/0:19:19,0:19:718:0:0:0,-5.71957,-64.931 0/1:5:1,4:1:27:4:164:-13.6447,0,-1.19463 dDocent_Contig_16825 8 . A C 34.3178 . AB=0.4;ABP=3.44459;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X1M7D2M1X1M1X1M1X;DP=45;DPB=48.4375;DPRA=0.375;EPP=7.35324;EPPR=81.4005;GTI=0;LEN=1;MEANALT=1;MQM=39;MQMR=57.875;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.75;PAO=25;PQA=834;PQR=34;PRO=4;QA=80;QR=1551;RO=40;RPL=0;RPP=7.35324;RPPR=81.4005;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:17:17,0:17:666:0:0:0,-5.11751,-60.0503 0|1:5:3,2:3:116:2:80:-5.13058,0,-8.95302 0|0:16:14,0:14:540:0:0:0,-4.21442,-46.4732 0|0:7:6,0:6:229:0:0:0,-1.80618,-20.6801 dDocent_Contig_16826 7 . A T 58.2826 . AB=0.208333;ABP=20.744;AC=2;AF=0.25;AN=8;AO=5;CIGAR=1X;DP=48;DPB=48;DPRA=1;EPP=13.8677;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.930233;PAO=0;PQA=0;PQR=0;PRO=0;QA=175;QR=1643;RO=43;RPL=0;RPP=13.8677;RPPR=96.3836;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:6:6,0:6:232:0:0:0,-1.80618,-21.2491 0/1:15:12,3:12:462:3:97:-4.53144,0,-37.4153 0/1:9:7,2:7:268:2:78:-4.6942,0,-21.7746 0/0:18:18,0:18:681:0:0:0,-5.41854,-61.6211 dDocent_Contig_16827 125 . G A 39.5955 . AB=0.151515;ABP=37.8197;AC=2;AF=0.25;AN=8;AO=5;CIGAR=1X;DP=66;DPB=66;DPRA=1;EPP=13.8677;EPPR=135.47;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=184;QR=2147;RO=61;RPL=0;RPP=13.8677;RPPR=135.47;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=135.47;SRR=61;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:18,3:18:636:3:111:-4.03229,0,-51.2433 0/0:28:28,0:28:970:0:0:0,-8.42884,-87.5986 0/0:5:5,0:5:183:0:0:0,-1.50515,-16.8268 0/1:12:10,2:10:358:2:73:-3.31894,0,-28.9481 dDocent_Contig_16828 13 . G A 203.464 . AB=0.211538;ABP=40.5935;AC=3;AF=0.375;AN=8;AO=11;CIGAR=1X;DP=61;DPB=61;DPRA=1.92593;EPP=26.8965;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=447;QR=1986;RO=50;RPL=0;RPP=26.8965;RPPR=111.584;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:25,4:25:1007:4:162:-6.23709,0,-82.1961 0/0:9:9,0:9:362:0:0:0,-2.70927,-32.9437 0/1:16:12,4:12:471:4:163:-10.2419,0,-37.919 0/1:7:4,3:4:146:3:122:-9.26528,0,-11.3878 dDocent_Contig_16829 82 . G C 42.8042 . AB=0.5;ABP=3.0103;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X;DP=20;DPB=20;DPRA=0.75;EPP=7.35324;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=44;MQMR=56.0556;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=78;QR=694;RO=18;RPL=2;RPP=7.35324;RPPR=42.0968;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:8:8,0:8:307:0:0:0,-2.40824,-26.8753 0/1:4:2,2:2:78:2:78:-5.97918,0,-5.7971 0/0:5:5,0:5:192:0:0:0,-1.50515,-17.65 0/0:3:3,0:3:117:0:0:0,-0.90309,-10.9104 dDocent_Contig_16830 209 . N G 117.91 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=119;QR=0;RO=0;RPL=3;RPP=9.52472;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1:0,1:0:0:1:39:-3.89656,-0.30103,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:80:-7.59179,-0.60206,0 dDocent_Contig_16831 90 . C T 90.9464 . AB=0.294118;ABP=9.26925;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=33;DPB=33;DPRA=3.1875;EPP=13.8677;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=173;QR=913;RO=27;RPL=5;RPP=13.8677;RPPR=61.6401;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:1:1,0:1:25:0:0:0,-0.30103,-2.49986 0/1:17:12,5:12:417:5:173:-10.7927,0,-32.7457 0/0:7:7,0:7:244:0:0:0,-2.10721,-22.3001 0/0:8:7,0:7:227:0:0:0,-2.10721,-20.6452 dDocent_Contig_16832 50 . G T 103.085 . AB=0.3125;ABP=7.89611;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=31;DPB=31;DPRA=3.2;EPP=13.8677;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=183;QR=1029;RO=26;RPL=5;RPP=13.8677;RPPR=59.4686;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:9:9,0:9:350:0:0:0,-2.70927,-31.8571 0/1:16:11,5:11:441:5:183:-12.0069,0,-35.2285 0/0:5:5,0:5:197:0:0:0,-1.50515,-18.1059 0/0:1:1,0:1:41:0:0:0,-0.30103,-4.09457 dDocent_Contig_16833 20 . T A 855.16 . AB=0.21875;ABP=68.9688;AC=1;AF=0.125;AN=8;AO=21;CIGAR=1M1X11M;DP=133;DPB=135.769;DPRA=3.2;EPP=48.6112;EPPR=163.699;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=811;QR=2875;RO=74;RPL=0;RPP=48.6112;RPPR=163.699;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=74;SRP=163.699;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:73:40,16,16:40:1555:16,16:613,621:-38.984,-0.719039,-123.695,0,-77.495,-122.979 0|0:15:13,1,0:13:501:1,0:38,0:0,-0.697013,-41.7232,-3.91339,-42.0243,-45.1414 0|0:23:11,7,5:11:433:7,5:277,190:-19.4947,0,-33.5216,-7.23476,-20.0553,-41.3478 0|0:22:10,11,0:10:386:11,0:431,0:-32.4149,0,-28.3662,-35.4252,-31.6775,-67.121 dDocent_Contig_16834 47 . G C 982.367 . AB=0.381443;ABP=14.8527;AC=4;AF=0.5;AN=8;AO=37;CIGAR=1X;DP=97;DPB=97;DPRA=0;EPP=59.4099;EPPR=133.299;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.918919;PAIREDR=0.866667;PAO=0;PQA=0;PQR=0;PRO=0;QA=1482;QR=2330;RO=60;RPL=3;RPP=59.4099;RPPR=133.299;RPR=34;RUN=1;SAF=37;SAP=83.3548;SAR=0;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:7,4:7:272:4:159:-11.3806,0,-21.5343 0/1:31:27,4:27:1028:4:163:-5.7265,0,-83.4665 0/1:29:22,7:22:867:7:286:-17.3849,0,-69.6092 0/1:26:4,22:4:163:22:874:-71.1425,0,-7.23165 dDocent_Contig_16836 55 . C T 61.1816 . AB=0.230769;ABP=11.1951;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=67;DPB=67;DPRA=0.722222;EPP=9.52472;EPPR=139.813;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=2497;RO=63;RPL=3;RPP=9.52472;RPPR=139.813;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=63;SRP=139.813;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:9,3:9:342:3:122:-7.51609,0,-27.3068 0/0:15:15,0:15:592:0:0:0,-4.51545,-53.6137 0/0:23:23,0:23:931:0:0:0,-6.92369,-84.0918 0/0:16:16,0:16:632:0:0:0,-4.81648,-57.2102 dDocent_Contig_16837 129 . A T 164.551 . AB=0.290323;ABP=14.8483;AC=2;AF=0.25;AN=8;AO=9;CIGAR=1X;DP=64;DPB=64;DPRA=0.939394;EPP=22.5536;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=316;QR=1916;RO=55;RPL=0;RPP=22.5536;RPPR=122.441;RPR=9;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=122.441;SRR=55;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:29:29,0:29:1025:0:0:0,-8.72987,-92.5636 0/1:27:19,8:19:654:8:282:-17.5939,0,-51.0504 0/1:4:3,1:3:108:1:34:-2.19479,0,-8.87105 0/0:4:4,0:4:129:0:0:0,-1.20412,-11.9286 dDocent_Contig_16840 107 . N A 96.1051 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=103;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:103:-9.60997,-0.90309,0 ./.:.:.:.:.:.:.:. dDocent_Contig_16841 61 . G T 42.7869 . AB=0.166667;ABP=20.3821;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=45;DPB=45;DPRA=2;EPP=9.52472;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=119;QR=1668;RO=42;RPL=3;RPP=9.52472;RPPR=94.2121;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:15,3:15:597:3:119:-5.67647,0,-48.6438 0/0:10:10,0:10:393:0:0:0,-3.0103,-35.7251 0/0:14:14,0:14:556:0:0:0,-4.21442,-50.3817 0/0:3:3,0:3:122:0:0:0,-0.90309,-11.3725 dDocent_Contig_16842 48 . G T 81.2062 . AB=0.75;ABP=5.18177;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=40;DPB=40;DPRA=0.333333;EPP=9.52472;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.405405;PAO=0;PQA=0;PQR=0;PRO=0;QA=118;QR=1422;RO=37;RPL=0;RPP=9.52472;RPPR=83.3548;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:14:14,0:14:539:0:0:0,-4.21442,-48.8538 0/0:14:14,0:14:536:0:0:0,-4.21442,-48.5842 0/0:8:8,0:8:308:0:0:0,-2.40824,-28.0815 0/1:4:1,3:1:39:3:118:-9.79808,0,-2.69244 dDocent_Contig_16843 54 . G T 37.8569 . AB=0.285714;ABP=5.80219;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X;DP=36;DPB=36;DPRA=0.724138;EPP=7.35324;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=0.529412;PAO=0;PQA=0;PQR=0;PRO=0;QA=80;QR=1352;RO=34;RPL=2;RPP=7.35324;RPPR=76.8404;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:11,0:11:446:0:0:0,-3.31133,-40.4956 0/1:7:5,2:5:187:2:80:-5.48458,0,-15.0796 0/0:8:8,0:8:315:0:0:0,-2.40824,-28.7114 0/0:10:10,0:10:404:0:0:0,-3.0103,-36.7204 dDocent_Contig_16845 16 . A G 627.893 . AB=0.278351;ABP=44.4026;AC=3;AF=0.375;AN=8;AO=31;CIGAR=1X;DP=146;DPB=146;DPRA=0;EPP=70.3259;EPPR=252.73;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=57.6696;NS=4;NUMALT=1;ODDS=0;PAIRED=0.645161;PAIREDR=0.582609;PAO=0;PQA=0;PQR=0;PRO=0;QA=1225;QR=4571;RO=115;RPL=0;RPP=70.3259;RPPR=252.73;RPR=31;RUN=1;SAF=31;SAP=70.3259;SAR=0;SRF=115;SRP=252.73;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:52:35,17:35:1388:17:674:-45.3381,0,-109.525 0/1:31:24,7:24:964:7:277:-15.9682,0,-77.7252 0/1:14:11,3:11:439:3:119:-6.88059,0,-35.1589 0/0:49:45,4:45:1780:4:155:0,-0.42503,-142.319 dDocent_Contig_16846 76 . T G 241.68 . AB=0.458333;ABP=3.37221;AC=2;AF=0.25;AN=8;AO=11;CIGAR=1X;DP=33;DPB=33;DPRA=2.66667;EPP=26.8965;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=379;QR=775;RO=22;RPL=11;RPP=26.8965;RPPR=50.7827;RPR=0;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:8,3:8:282:3:105:-6.48483,0,-22.4102 0/0:8:8,0:8:281:0:0:0,-2.40824,-25.6305 0/1:13:5,8:5:178:8:274:-21.0805,0,-12.4553 0/0:1:1,0:1:34:0:0:0,-0.30103,-3.39891 dDocent_Contig_16849 60 . C T 122.612 . AB=0.217391;ABP=18.9659;AC=4;AF=0.5;AN=8;AO=7;CIGAR=1X;DP=38;DPB=38;DPRA=0;EPP=18.2106;EPPR=65.983;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=262;QR=1166;RO=29;RPL=7;RPP=18.2106;RPPR=65.983;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:14:12,1:12:475:1:23:0,-1.9332,-40.7117 0/1:19:15,3:15:610:3:121:-5.46849,0,-49.4284 1/1:1:0,1:0:0:1:39:-3.89656,-0.30103,0 0/1:4:2,2:2:81:2:79:-6.29351,0,-6.48161 dDocent_Contig_16850 83 . A G 140.427 . AB=0.411765;ABP=4.1599;AC=2;AF=0.25;AN=8;AO=7;CIGAR=1X;DP=60;DPB=60;DPRA=0.395349;EPP=18.2106;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=243;QR=1804;RO=53;RPL=7;RPP=18.2106;RPPR=118.098;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:32:32,0:32:1078:0:0:0,-9.63296,-97.325 0/1:8:6,2:6:210:2:70:-4.23916,0,-16.8342 0/1:9:4,5:4:140:5:173:-13.2009,0,-10.2357 0/0:11:11,0:11:376:0:0:0,-3.31133,-34.1699 dDocent_Contig_16851 136 . A G 168.238 . AB=0.13242;ABP=260.027;AC=1;AF=0.125;AN=8;AO=29;CIGAR=1X;DP=673;DPB=673;DPRA=1.44714;EPP=65.983;EPPR=1401.44;GTI=0;LEN=1;MEANALT=1;MQM=33.1034;MQMR=32.75;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.84472;PAO=0;PQA=0;PQR=0;PRO=0;QA=1153;QR=24030;RO=644;RPL=0;RPP=65.983;RPPR=1401.44;RPR=29;RUN=1;SAF=0;SAP=65.983;SAR=29;SRF=0;SRP=1401.44;SRR=644;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:219:190,29:190:7060:29:1153:-18.2218,0,-388.728 0/0:152:152,0:152:5608:0:0:0,-45.7566,-418.499 0/0:197:197,0:197:7403:0:0:0,-59.3029,-527.362 0/0:105:105,0:105:3959:0:0:0,-31.6081,-293.517 dDocent_Contig_16852 14 . G A 1085.23 . AB=0.142857;ABP=173.626;AC=4;AF=0.5;AN=8;AO=22;CIGAR=3X5M1X1M4D1M1X;DP=154;DPB=134.875;DPRA=0;EPP=50.7827;EPPR=170.214;GTI=0;LEN=1;MEANALT=3.25;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=0.987013;PAO=0;PQA=0;PQR=0;PRO=0;QA=836;QR=3027;RO=77;RPL=0;RPP=50.7827;RPPR=170.214;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=77;SRP=170.214;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:57:31,4,12,9:31:1217:4,12,9:160,465,333:-28.7742,-25.027,-123.924,0,-87.0255,-96.4906,-10.8759,-97.8948,-72.8705,-108.263 0|1:36:18,2,10,6:18:714:2,10,6:80,390,229:-26.6412,-25.4681,-83.6471,0,-52.1923,-55.7727,-13.2767,-65.465,-40.0002,-70.2494 0|1:35:13,4,13,4:13:509:4,13,4:155,515,154:-38.4808,-29.6624,-70.3112,0,-29.1237,-37.9427,-29.7522,-58.8727,-29.2134,-70.4007 0|1:26:15,0,8,3:15:587:0,8,3:0,322,120:-22.0248,-26.5402,-74.798,0,-48.2566,-45.8484,-16.6557,-64.9122,-38.3699,-64.0091 dDocent_Contig_16853 137 . C A 30.899 . AB=0.222222;ABP=9.04217;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X;DP=57;DPB=57;DPRA=0.5625;EPP=7.35324;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=79;QR=2189;RO=55;RPL=0;RPP=7.35324;RPPR=122.441;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=122.441;SRR=55;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:44:44,0:44:1763:0:0:0,-13.2453,-158.878 0/1:9:7,2:7:284:2:79:-4.78797,0,-23.2247 0/0:2:2,0:2:82:0:0:0,-0.60206,-7.77968 0/0:2:2,0:2:60:0:0:0,-0.60206,-5.69857 dDocent_Contig_16856 13 . T G 96.817 . AB=0.363636;ABP=4.78696;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=33;DPB=33;DPRA=1.5;EPP=11.6962;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=159;QR=1173;RO=29;RPL=0;RPP=11.6962;RPPR=65.983;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:1:1,0:1:40:0:0:0,-0.30103,-3.99568 0/1:11:7,4:7:282:4:159:-11.3801,0,-22.4411 0/0:10:10,0:10:404:0:0:0,-3.0103,-36.7201 0/0:11:11,0:11:447:0:0:0,-3.31133,-40.5861 dDocent_Contig_16857 16 . G A 2340.7 . AB=0.620968;ABP=18.771;AC=3;AF=0.375;AN=8;AO=77;CIGAR=1X;DP=132;DPB=132;DPRA=5.16667;EPP=170.214;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3065;QR=2186;RO=55;RPL=0;RPP=170.214;RPPR=122.441;RPR=77;RUN=1;SAF=77;SAP=170.214;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:55:5,50:5:204:50:1984:-162.196,0,-2.18738 0/1:30:26,4:26:1028:4:160:-5.75269,0,-83.7807 0/1:39:16,23:16:643:23:921:-71.4541,0,-46.4642 0/0:8:8,0:8:311:0:0:0,-2.40824,-28.3484 dDocent_Contig_16858 72 . C T 3039.09 . AB=0.854167;ABP=107.603;AC=6;AF=0.75;AN=8;AO=98;CIGAR=1X;DP=112;DPB=112;DPRA=0;EPP=215.815;EPPR=33.4109;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=0.989796;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3713;QR=545;RO=14;RPL=98;RPP=215.815;RPPR=33.4109;RPR=0;RUN=1;SAF=98;SAP=215.815;SAR=0;SRF=14;SRP=33.4109;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:8,23:8:318:23:871:-69.3698,0,-19.6542 0/1:65:6,59:6:227:59:2232:-181.529,0,-1.22539 1/1:12:0,12:0:0:12:459:-41.6576,-3.61236,0 1/1:4:0,4:0:0:4:151:-13.9573,-1.20412,0 dDocent_Contig_16859 22 . C T 140.287 . AB=0.205882;ABP=28.557;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X1M1X1M1X;DP=62;DPB=62;DPRA=3.64286;EPP=18.2106;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=281;QR=2193;RO=55;RPL=0;RPP=18.2106;RPPR=122.441;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:34:27,7:27:1085:7:281:-15.4267,0,-87.7054 0|0:10:10,0:10:400:0:0:0,-3.0103,-36.3592 0|0:12:12,0:12:469:0:0:0,-3.61236,-42.5569 0|0:6:6,0:6:239:0:0:0,-1.80618,-21.8832 dDocent_Contig_16860 22 . T A 372.877 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=11;CIGAR=2X;DP=11;DPB=11;DPRA=0;EPP=26.8965;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0.818182;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=403;QR=0;RO=0;RPL=0;RPP=26.8965;RPPR=0;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. 1|1:10:0,10:0:0:10:366:-33.2877,-3.0103,0 .:.:.:.:.:.:.:. 1|1:1:0,1:0:0:1:37:-3.69783,-0.30103,0 dDocent_Contig_16861 23 . C A 2878.78 . AB=0.0630915;ABP=528.609;AC=1;AF=0.125;AN=8;AO=20;CIGAR=3M1X18M;DP=412;DPB=478.545;DPRA=0;EPP=46.4397;EPPR=68.1545;GTI=0;LEN=1;MEANALT=31;MQM=60;MQMR=60;NS=4;NUMALT=9;ODDS=2.22045e-16;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=782;QR=1139;RO=30;RPL=0;RPP=46.4397;RPPR=68.1545;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:193:16,13,22,3,13,16,10,27,3,17:16:596:13,22,3,13,16,10,27,3,17:458,769,113,463,631,394,1044,121,660:-94.6855,-62.2257,-107.094,-36.9585,-48.464,-79.1174,-90.2421,-101.747,-76.4802,-138.12,-61.7698,-73.2751,-48.008,-101.291,-106.638,-47.5831,-59.0886,-33.8212,-87.1051,-58.6326,-91.5485,-67.0859,-78.5913,-53.3241,-106.608,-78.1354,-63.9488,-112.857,-13.7618,-25.2675,0,-53.2841,-24.8115,-10.6245,-30.1276,-54.4163,-89.5267,-101.032,-75.7649,-129.048,-100.576,-86.3897,-105.892,-52.5687,-137.405,-45.277,-56.7825,-31.5152,-84.799,-56.3265,-42.1398,-61.6428,-8.31838,-84.0836,-88.9414 0|0:124:0,0,11,22,7,3,0,5,17,3:0:0:0,11,22,7,3,0,5,17,3:0,392,856,254,121,0,187,667,122:-125.203,-125.203,-125.203,-93.2585,-93.2585,-89.9472,-54.8553,-54.8553,-22.9099,-48.2327,-104.464,-104.464,-72.5196,-34.1159,-102.357,-115.228,-115.228,-83.2831,-44.8796,-94.489,-114.325,-125.203,-125.203,-93.2585,-54.8553,-104.464,-115.228,-125.203,-109.891,-109.891,-77.946,-39.5424,-89.1518,-99.9155,-109.891,-108.386,-70.3505,-70.3505,-38.4052,0,-49.6112,-60.3749,-70.3505,-55.0377,-65.233,-115.139,-115.139,-83.194,-44.7905,-94.3999,-105.164,-115.139,-99.8264,-60.2858,-114.236 0|0:55:9,0,3,19,0,2,0,0,2,0:9:352:0,3,19,0,2,0,0,2,0:0,116,754,0,79,0,0,79,0:-59.3943,-62.1036,-91.0519,-52.5729,-81.522,-80.6189,0,-28.9601,-19.4274,-23.2406,-62.1036,-91.0519,-81.522,-28.9601,-91.0519,-55.6009,-84.5498,-75.0198,-22.456,-84.5498,-83.9478,-62.1036,-91.0519,-81.522,-28.9601,-91.0519,-84.5498,-91.0519,-62.1036,-91.0519,-81.522,-28.9601,-91.0519,-84.5498,-91.0519,-91.0519,-55.6009,-84.5498,-75.0198,-22.456,-84.5498,-78.0477,-84.5498,-84.5498,-83.9478,-62.1036,-91.0519,-81.522,-28.9601,-91.0519,-84.5498,-91.0519,-91.0519,-84.5498,-91.0519 0|1:40:5,4,3,5,1,4,5,0,0,0:5:191:4,3,5,1,4,5,0,0,0:143,108,200,19,159,202,0,0,0:-15.9652,-5.81069,-20.2817,-8.65722,-12.6731,-23.4291,-0.986732,-5.00308,-7.8497,-15.1579,-16.066,-20.0815,-22.9277,-15.2587,-31.439,-4.37275,-8.38888,-11.2354,-3.56514,-18.6441,-18.8445,-0.807706,-4.82408,-7.67071,0,-15.0797,-3.38613,-14.979,-17.4704,-21.4858,-24.3322,-16.6631,-31.74,-20.0486,-16.4841,-33.1448,-17.4704,-21.4858,-24.3322,-16.6631,-31.74,-20.0486,-16.4841,-33.1448,-33.1448,-17.4704,-21.4858,-24.3322,-16.6631,-31.74,-20.0486,-16.4841,-33.1448,-33.1448,-33.1448 dDocent_Contig_16863 25 . T A 677.75 . AB=0.278846;ABP=47.1914;AC=3;AF=0.375;AN=8;AO=30;CIGAR=1X;DP=119;DPB=119;DPRA=0;EPP=68.1545;EPPR=196.271;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.966292;PAO=0;PQA=0;PQR=0;PRO=0;QA=1190;QR=3587;RO=89;RPL=0;RPP=68.1545;RPPR=196.271;RPR=30;RUN=1;SAF=30;SAP=68.1545;SAR=0;SRF=89;SRP=196.271;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:42:32,10:32:1300:10:405:-24.1668,0,-104.618 0/1:30:20,10:20:801:10:402:-27.509,0,-63.3771 0/1:32:23,9:23:916:9:342:-21.4968,0,-73.1132 0/0:15:14,1:14:570:1:41:0,-0.420883,-47.5474 dDocent_Contig_16865 118 . C T 64.6728 . AB=0.6;ABP=3.44459;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=20;DPB=20;DPRA=0.666667;EPP=9.52472;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=105;QR=556;RO=17;RPL=0;RPP=9.52472;RPPR=39.9253;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=39.9253;SRR=17;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:7:7,0:7:210:0:0:0,-2.10721,-19.194 0/0:8:8,0:8:278:0:0:0,-2.40824,-25.358 ./.:.:.:.:.:.:.:. 0/1:5:2,3:2:68:3:105:-8.29101,0,-4.95273 dDocent_Contig_16866 26 . A C 255.776 . AB=0.37037;ABP=6.95112;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=39;DPB=39;DPRA=1.125;EPP=24.725;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.931034;PAO=0;PQA=0;PQR=0;PRO=0;QA=405;QR=1159;RO=29;RPL=0;RPP=24.725;RPPR=65.983;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:12:12,0:12:472:0:0:0,-3.61236,-42.8274 0/1:3:2,1:2:82:1:41:-3.19148,0,-6.87659 0/1:24:15,9:15:605:9:364:-25.8998,0,-47.5632 ./.:.:.:.:.:.:.:. dDocent_Contig_16867 9 . T C 658.937 . AB=0.431034;ABP=5.40641;AC=3;AF=0.375;AN=8;AO=26;CIGAR=1X;DP=83;DPB=83;DPRA=0;EPP=59.4686;EPPR=126.784;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=0.5;PAIREDR=0.666667;PAO=0;PQA=0;PQR=0;PRO=0;QA=1013;QR=2189;RO=57;RPL=0;RPP=59.4686;RPPR=126.784;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:6,6:6:233:6:234:-17.8187,0,-17.7277 0/1:21:10,11:10:385:11:428:-32.5537,0,-28.6852 0/0:25:24,1:24:920:1:39:0,-3.62919,-79.2209 0/1:25:17,8:17:651:8:312:-20.9192,0,-51.4013 dDocent_Contig_16868 1 . N G 111.882 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=120;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:120:-11.1877,-0.90309,0 ./.:.:.:.:.:.:.:. dDocent_Contig_16869 18 . C A 76.3245 . AB=0.222222;ABP=15.074;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=46;DPB=46;DPRA=1.28571;EPP=11.6962;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.357143;PAO=0;PQA=0;PQR=0;PRO=0;QA=161;QR=1687;RO=42;RPL=0;RPP=11.6962;RPPR=94.2121;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:14:14,0:14:568:0:0:0,-4.21442,-51.4628 0/1:18:14,4:14:560:4:161:-9.45636,0,-45.3242 0/0:14:14,0:14:559:0:0:0,-4.21442,-50.6451 ./.:.:.:.:.:.:.:. dDocent_Contig_16871 25 . C A 70.8999 . AB=0.210526;ABP=16.8392;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=39;DPB=39;DPRA=2.85;EPP=11.6962;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=0.794118;PAO=0;PQA=0;PQR=0;PRO=0;QA=157;QR=1322;RO=34;RPL=0;RPP=11.6962;RPPR=76.8404;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:15:14,0:14:524:0:0:0,-4.21442,-47.1302 0/1:19:15,4:15:597:4:157:-8.78835,0,-48.3462 0/0:1:1,0:1:41:0:0:0,-0.30103,-4.09457 0/0:4:4,0:4:160:0:0:0,-1.20412,-14.784 dDocent_Contig_16872 129 . C T 2505.38 . AB=0.7875;ABP=60.4457;AC=5;AF=0.625;AN=8;AO=88;CIGAR=1X;DP=105;DPB=105;DPRA=0;EPP=194.1;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3090;QR=586;RO=17;RPL=0;RPP=194.1;RPPR=39.9253;RPR=88;RUN=1;SAF=0;SAP=194.1;SAR=88;SRF=0;SRP=39.9253;SRR=17;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:57:9,48:9:308:48:1692:-135.408,0,-10.8933 1/1:25:0,25:0:0:25:873:-78.8863,-7.52575,0 0/1:16:7,9:7:243:9:312:-23.5981,0,-17.3924 0/1:7:1,6:1:35:6:213:-17.4092,0,-1.39142 dDocent_Contig_16873 42 . T C 35.7864 . AB=0.285714;ABP=5.80219;AC=1;AF=0.25;AN=4;AO=2;CIGAR=1M1D2M1X;DP=17;DPB=16.6;DPRA=0.7;EPP=7.35324;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=576;RO=15;RPL=0;RPP=7.35324;RPPR=35.5824;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=15;SRP=35.5824;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:10:10,0:10:378:0:0:0,-3.0103,-34.3654 .:.:.:.:.:.:.:. 0|1:7:5,2:5:198:2:81:-5.57852,0,-16.0893 .:.:.:.:.:.:.:. dDocent_Contig_16874 39 . A G 80.8102 . AB=0;ABP=0;AC=2;AF=0.25;AN=8;AO=2;CIGAR=1X;DP=37;DPB=37;DPRA=0.171429;EPP=7.35324;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=1401;RO=35;RPL=0;RPP=7.35324;RPPR=79.0118;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:23:23,0:23:915:0:0:0,-6.92369,-82.6533 1/1:2:0,2:0:0:2:82:-7.77968,-0.60206,0 0/0:5:5,0:5:203:0:0:0,-1.50515,-18.6528 0/0:7:7,0:7:283:0:0:0,-2.10721,-25.8434 dDocent_Contig_16876 1 . N G 76.8682 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:81:-7.68573,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_16878 72 . G T 117.531 . AB=0.12;ABP=34.3664;AC=3;AF=0.375;AN=8;AO=6;CIGAR=1M1X1M;DP=46;DPB=45.3333;DPRA=1.55556;EPP=16.0391;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=219;QR=1372;RO=38;RPL=6;RPP=16.0391;RPPR=85.5263;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:25:20,2,3:20:728:2,3:72,111:-3.06643,-3.21652,-62.0703,0,-53.5905,-58.5615 0|0:14:14,0,0:14:506:0,0:0,0:0,-4.21442,-45.8753,-4.21442,-45.8753,-45.8753 1|1:3:0,0,3:0:0:0,3:0,108:-10.0749,-10.0749,-10.0749,-0.90309,-0.90309,0 0|0:4:4,0,0:4:138:0,0:0,0:0,-1.20412,-12.7596,-1.20412,-12.7596,-12.7596 dDocent_Contig_16879 38 . A G 696.935 . AB=0.433333;ABP=5.32654;AC=3;AF=0.375;AN=8;AO=26;CIGAR=1X;DP=66;DPB=66;DPRA=3.33333;EPP=59.4686;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.5;PAIREDR=0.975;PAO=0;PQA=0;PQR=0;PRO=0;QA=1023;QR=1568;RO=40;RPL=0;RPP=59.4686;RPPR=89.8692;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:33:25,8:25:972:8:309:-18.2322,0,-77.8515 0/1:17:3,14:3:117:14:555:-45.1775,0,-5.7927 0/1:10:6,4:6:241:4:159:-11.6817,0,-19.0564 0/0:6:6,0:6:238:0:0:0,-1.80618,-21.7945 dDocent_Contig_16880 34 . T G 1549.76 . AB=0.679487;ABP=24.8364;AC=4;AF=0.5;AN=8;AO=53;CIGAR=1X;DP=78;DPB=78;DPRA=0;EPP=118.098;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.943396;PAIREDR=0.92;PAO=0;PQA=0;PQR=0;PRO=0;QA=2049;QR=993;RO=25;RPL=0;RPP=118.098;RPPR=57.2971;RPR=53;RUN=1;SAF=53;SAP=118.098;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:8,14:8:323:14:528:-41.2361,0,-22.8159 0/1:46:15,31:15:588:31:1211:-95.4327,0,-39.4085 0/1:6:1,5:1:41:5:194:-16.0267,0,-2.28839 0/1:4:1,3:1:41:3:116:-9.61358,0,-2.89045 dDocent_Contig_16881 18 . G T 366.156 . AB=0.631579;ABP=5.8675;AC=1;AF=0.125;AN=8;AO=14;CIGAR=1X;DP=67;DPB=67;DPRA=1.91304;EPP=33.4109;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.981132;PAO=0;PQA=0;PQR=0;PRO=0;QA=561;QR=2035;RO=53;RPL=0;RPP=33.4109;RPPR=118.098;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:7,12:7:262:12:482:-38.0124,0,-18.2122 0/0:25:23,2:23:900:2:79:0,-0.0285055,-73.8066 0/0:20:20,0:20:780:0:0:0,-6.0206,-70.5148 0/0:3:3,0:3:93:0:0:0,-0.90309,-8.6746 dDocent_Contig_16882 12 . C T 106.545 . AB=0;ABP=0;AC=2;AF=0.25;AN=8;AO=3;CIGAR=1X;DP=36;DPB=36;DPRA=0.272727;EPP=9.52472;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.909091;PAO=0;PQA=0;PQR=0;PRO=0;QA=111;QR=1290;RO=33;RPL=0;RPP=9.52472;RPPR=74.6689;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:15:15,0:15:585:0:0:0,-4.51545,-52.9852 0/0:17:17,0:17:664:0:0:0,-5.11751,-60.0878 0/0:1:1,0:1:41:0:0:0,-0.30103,-4.09457 1/1:3:0,3:0:0:3:111:-10.3528,-0.90309,0 dDocent_Contig_16883 1 . N G 508.461 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=23;CIGAR=1X;DP=23;DPB=23;DPRA=0;EPP=52.9542;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=27.1739;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=791;QR=0;RO=0;RPL=0;RPP=52.9542;RPPR=0;RPR=23;RUN=1;SAF=0;SAP=52.9542;SAR=23;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:18:0,18:0:0:18:613:-43.3318,-5.41854,0 1/1:5:0,5:0:0:5:178:-7.21324,-1.50515,0 ./.:.:.:.:.:.:.:. dDocent_Contig_16884 10 . T C 191.491 . AB=0.164835;ABP=91.802;AC=4;AF=0.5;AN=8;AO=15;CIGAR=1X;DP=91;DPB=91;DPRA=0;EPP=35.5824;EPPR=157.301;GTI=0;LEN=1;MEANALT=1.25;MQM=58.4667;MQMR=57.6933;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.306667;PAO=0;PQA=0;PQR=0;PRO=0;QA=581;QR=2833;RO=75;RPL=0;RPP=35.5824;RPPR=165.871;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=74;SRP=157.301;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:55:49,6:49:1863:6:228:-3.8309,0,-148.993 0/1:16:13,3:13:488:3:118:-6.18572,0,-39.4448 0/1:11:5,5:5:184:5:195:-14.5084,0,-13.5029 0/1:9:8,1:8:298:1:40:-1.28641,0,-24.4625 dDocent_Contig_16885 67 . A G 540.658 . AB=0.421053;ABP=4.03889;AC=6;AF=0.75;AN=8;AO=17;CIGAR=1X;DP=28;DPB=28;DPRA=0;EPP=39.9253;EPPR=26.8965;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=685;QR=424;RO=11;RPL=17;RPP=39.9253;RPPR=26.8965;RPR=0;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=11;SRP=26.8965;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:5,4:5:194:4:161:-12.166,0,-15.1225 1/1:6:0,6:0:0:6:245:-22.4295,-1.80618,0 0/1:10:6,4:6:230:4:160:-11.7731,0,-18.054 1/1:3:0,3:0:0:3:119:-11.095,-0.90309,0 dDocent_Contig_16887 142 . A C 56.4577 . AB=0.25;ABP=13.8677;AC=3;AF=0.375;AN=8;AO=5;CIGAR=1X;DP=22;DPB=22;DPRA=3.33333;EPP=13.8677;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=166;QR=588;RO=17;RPL=0;RPP=13.8677;RPPR=39.9253;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=39.9253;SRR=17;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:8,3:8:273:3:101:-6.11227,0,-21.5912 0/0:2:2,0:2:70:0:0:0,-0.60206,-6.6474 0/1:2:1,1:1:35:1:35:-2.89657,0,-2.89657 0/1:7:6,1:6:210:1:30:-0.892356,0,-17.1353 dDocent_Contig_16888 53 . C T 58.17 . AB=0.222222;ABP=15.074;AC=2;AF=0.25;AN=8;AO=4;CIGAR=1X2M1X;DP=51;DPB=51;DPRA=0.545455;EPP=11.6962;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.5;PAIREDR=0.659574;PAO=0;PQA=0;PQR=0;PRO=0;QA=154;QR=1862;RO=47;RPL=4;RPP=11.6962;RPPR=105.07;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:17:17,0:17:668:0:0:0,-5.11751,-60.4489 0|0:16:16,0:16:636:0:0:0,-4.81648,-57.5762 0|1:14:12,2:12:477:2:74:-2.81101,0,-39.0658 0|1:4:2,2:2:81:2:80:-6.38745,0,-6.48161 dDocent_Contig_16889 143 . C T 30.3207 . AB=0;ABP=0;AC=0;AF=0;AN=6;AO=2;CIGAR=1X3M1X2M1X2M1X2M1X1M2X;DP=26;DPB=26;DPRA=1.05882;EPP=7.35324;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=5;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=78;QR=769;RO=21;RPL=0;RPP=7.35324;RPPR=48.6112;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=48.6112;SRR=21;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:15:14,0,0:14:516:0,0:0,0:0,-4.21442,-46.4179,-4.21442,-46.4179,-46.4179 0|0:2:0,2,0:0:0:2,0:36,0:-2.85461,-0.60206,0,-2.85461,-0.60206,-2.85461 0|0:9:7,0,2:7:253:0,2:0,78:0,-2.10721,-22.9974,-1.7595,-22.7688,-22.1667 .:.:.:.:.:.:.:. dDocent_Contig_16890 116 . T A 159.282 . AB=0.466667;ABP=3.15506;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=29;DPB=29;DPRA=3.21429;EPP=18.2106;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=239;QR=761;RO=22;RPL=0;RPP=18.2106;RPPR=50.7827;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=50.7827;SRR=22;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:8,7:8:278:7:239:-17.3253,0,-20.8426 0/0:11:11,0:11:380:0:0:0,-3.31133,-34.5329 0/0:2:2,0:2:68:0:0:0,-0.60206,-6.45793 0/0:1:1,0:1:35:0:0:0,-0.30103,-3.49863 dDocent_Contig_16891 31 . T A 49.5045 . AB=0.1875;ABP=16.582;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=26;DPB=26;DPRA=4.8;EPP=9.52472;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=123;QR=919;RO=23;RPL=0;RPP=9.52472;RPPR=52.9542;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:1:1,0:1:41:0:0:0,-0.30103,-4.09457 0/1:16:13,3:13:514:3:123:-6.64831,0,-41.7844 0/0:8:8,0:8:324:0:0:0,-2.40824,-29.5292 0/0:1:1,0:1:40:0:0:0,-0.30103,-3.99568 dDocent_Contig_16892 36 . A T 49.3604 . AB=0.111111;ABP=85.7675;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=119;DPB=119;DPRA=3.375;EPP=18.2106;EPPR=246.215;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=277;QR=4444;RO=112;RPL=0;RPP=18.2106;RPPR=246.215;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=112;SRP=246.215;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:63:56,7:56:2211:7:277:-6.33398,0,-180.194 0/0:23:23,0:23:919:0:0:0,-6.92369,-83.0139 0/0:19:19,0:19:758:0:0:0,-5.71957,-68.5416 0/0:14:14,0:14:556:0:0:0,-4.21442,-50.3824 dDocent_Contig_16893 143 . A G 69.3179 . AB=0.333333;ABP=5.18177;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=21;DPB=21;DPRA=1.5;EPP=9.52472;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=123;QR=690;RO=18;RPL=0;RPP=9.52472;RPPR=42.0968;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=42.0968;SRR=18;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:9:9,0:9:335:0:0:0,-2.70927,-30.4836 ./.:.:.:.:.:.:.:. 0/1:9:6,3:6:233:3:123:-8.75552,0,-18.6265 0/0:3:3,0:3:122:0:0:0,-0.90309,-11.3725 dDocent_Contig_16894 53 . A G 802.074 . AB=0.0769231;ABP=83.8559;AC=0;AF=0;AN=8;AO=4;CIGAR=1M1X1M;DP=85;DPB=221;DPRA=0;EPP=11.6962;EPPR=105.07;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.5;PAIREDR=0.93617;PAO=0;PQA=0;PQR=0;PRO=0;QA=163;QR=1887;RO=47;RPL=4;RPP=11.6962;RPPR=105.07;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:19:13,4,2:13:519:4,2:156,82:-8.89676,0,-41.5307,-6.03538,-35.9653,-48.1844 0|0:20:15,5,0:15:607:5,0:189,0:-11.3546,0,-48.948,-15.87,-50.4532,-65.9389 0|0:33:10,21,2:10:398:21,2:758,81:-58.7895,0,-26.4432,-55.1169,-26.0845,-87.2973 0|0:13:9,4,0:9:363:4,0:135,0:-8.56449,0,-29.1213,-11.2738,-30.3254,-41.2417 dDocent_Contig_16895 11 . G C 248.957 . AB=0.136364;ABP=28.2783;AC=5;AF=0.625;AN=8;AO=11;CIGAR=1X;DP=73;DPB=73;DPRA=0;EPP=26.8965;EPPR=137.642;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=0.0909091;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=433;QR=2320;RO=62;RPL=0;RPP=26.8965;RPPR=137.642;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:78:-7.40347,-0.60206,0 1/1:4:0,4:0:0:4:156:-14.4171,-1.20412,0 0/0:45:43,2:43:1586:2:80:0,-5.95477,-135.409 0/1:22:19,3:19:734:3:119:-4.47235,0,-59.7672 dDocent_Contig_16898 14 . T C 145.348 . AB=0.178571;ABP=53.2644;AC=3;AF=0.375;AN=8;AO=10;CIGAR=1X;DP=75;DPB=75;DPRA=0.982456;EPP=24.725;EPPR=144.156;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.984615;PAO=0;PQA=0;PQR=0;PRO=0;QA=396;QR=2535;RO=65;RPL=0;RPP=24.725;RPPR=144.156;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=65;SRP=144.156;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:21,4:21:799:4:157:-6.98305,0,-64.7052 0/1:22:18,4:18:715:4:160:-8.16114,0,-58.0568 0/0:19:19,0:19:746:0:0:0,-5.71957,-67.4669 0/1:9:7,2:7:275:2:79:-4.78836,0,-22.4086 dDocent_Contig_16899 23 . C T 176.875 . AB=0.307692;ABP=11.3621;AC=2;AF=0.25;AN=8;AO=8;CIGAR=1X;DP=32;DPB=32;DPRA=4.33333;EPP=20.3821;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=313;QR=962;RO=24;RPL=0;RPP=20.3821;RPPR=55.1256;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:12,5:12:488:5:202:-13.444,0,-39.154 0/0:3:3,0:3:119:0:0:0,-0.90309,-11.0945 0/1:9:6,3:6:241:3:111:-7.64122,0,-19.3568 0/0:3:3,0:3:114:0:0:0,-0.90309,-10.6292 dDocent_Contig_16900 113 . C G 160.621 . AB=0.275;ABP=20.5992;AC=2;AF=0.25;AN=8;AO=11;CIGAR=1X;DP=50;DPB=50;DPRA=4;EPP=26.8965;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=343;QR=1327;RO=39;RPL=0;RPP=26.8965;RPPR=87.6977;RPR=11;RUN=1;SAF=0;SAP=26.8965;SAR=11;SRF=0;SRP=87.6977;SRR=39;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:19,8:19:641:8:241:-13.8565,0,-49.88 0/0:7:7,0:7:243:0:0:0,-2.10721,-22.2088 0/1:13:10,3:10:344:3:102:-5.60341,0,-27.3793 0/0:3:3,0:3:99:0:0:0,-0.90309,-9.2374 dDocent_Contig_16901 89 . C G 153.354 . AB=0.258065;ABP=18.771;AC=2;AF=0.25;AN=8;AO=8;CIGAR=1X;DP=49;DPB=49;DPRA=1.72222;EPP=20.3821;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=294;QR=1482;RO=41;RPL=8;RPP=20.3821;RPPR=92.0407;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:17:17,0:17:624:0:0:0,-5.11751,-56.4954 0/1:20:18,2:18:642:2:72:-0.816036,0,-52.0868 0/1:11:5,6:5:179:6:222:-17.0267,0,-13.1482 0/0:1:1,0:1:37:0:0:0,-0.30103,-3.69783 dDocent_Contig_16903 15 . A G 51.5808 . AB=0.2;ABP=14.7363;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=86;DPB=86;DPRA=0.633803;EPP=9.52472;EPPR=183.243;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.939759;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=3278;RO=83;RPL=0;RPP=9.52472;RPPR=183.243;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=83;SRP=183.243;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:16:16,0:16:643:0:0:0,-4.81648,-58.2043 0/0:26:26,0:26:1035:0:0:0,-7.82678,-93.4443 0/0:29:29,0:29:1145:0:0:0,-8.72987,-103.338 0/1:15:12,3:12:455:3:122:-6.85704,0,-36.7752 dDocent_Contig_16906 13 . G A 1210.38 . AB=0.403509;ABP=12.2295;AC=4;AF=0.5;AN=8;AO=46;CIGAR=1X2M1X;DP=114;DPB=114;DPRA=0;EPP=102.898;EPPR=150.67;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1793;QR=2686;RO=68;RPL=0;RPP=102.898;RPPR=150.67;RPR=46;RUN=1;SAF=46;SAP=102.898;SAR=0;SRF=68;SRP=150.67;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:6:2,4:2:81:4:151:-12.1506,0,-5.87955 0|1:53:32,21:32:1255:21:831:-59.1491,0,-97.2701 0|1:34:18,16:18:710:16:617:-45.6262,0,-53.9911 0|1:21:16,5:16:640:5:194:-11.5096,0,-51.6131 dDocent_Contig_16907 21 . G A 332.712 . AB=0.5;ABP=3.0103;AC=1;AF=0.125;AN=8;AO=12;CIGAR=1X;DP=77;DPB=77;DPRA=1.35849;EPP=29.068;EPPR=144.156;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.953846;PAO=0;PQA=0;PQR=0;PRO=0;QA=465;QR=2615;RO=65;RPL=0;RPP=29.068;RPPR=144.156;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=65;SRP=144.156;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:11,0:11:442:0:0:0,-3.31133,-40.1349 0/0:34:34,0:34:1359:0:0:0,-10.235,-122.564 0/0:8:8,0:8:324:0:0:0,-2.40824,-29.5294 0/1:24:12,12:12:490:12:465:-34.9702,0,-37.2264 dDocent_Contig_16909 10 . T G 709.158 . AB=0.258621;ABP=61.7149;AC=2;AF=0.25;AN=8;AO=38;CIGAR=1X;DP=218;DPB=218;DPRA=0;EPP=85.5263;EPPR=391.704;GTI=0;LEN=1;MEANALT=1.25;MQM=59.7368;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.947368;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1523;QR=6744;RO=179;RPL=0;RPP=85.5263;RPPR=391.704;RPR=38;RUN=1;SAF=38;SAP=85.5263;SAR=0;SRF=179;SRP=391.704;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:75:69,6:69:2607:6:237:0,-0.887538,-213.131 0/1:43:37,6:37:1390:6:245:-9.48518,0,-112.428 0/1:73:48,24:48:1799:24:959:-64.828,0,-140.379 0/0:27:25,2:25:948:2:82:0,-0.348132,-77.8524 dDocent_Contig_16911 32 . G T 290.775 . AB=0.211268;ABP=54.4222;AC=3;AF=0.375;AN=8;AO=16;CIGAR=1X;DP=89;DPB=89;DPRA=0;EPP=37.7539;EPPR=161.528;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.875;PAIREDR=0.945205;PAO=0;PQA=0;PQR=0;PRO=0;QA=632;QR=2858;RO=73;RPL=0;RPP=37.7539;RPPR=161.528;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=73;SRP=161.528;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:38:27,11:27:1049:11:432:-27.7913,0,-83.2576 0/1:21:18,3:18:699:3:118:-4.68057,0,-56.9133 0/0:18:17,1:17:667:1:41:0,-1.32397,-56.2671 0/1:12:11,1:11:443:1:41:-0.482207,0,-36.6135 dDocent_Contig_16912 19 . T A 1548.68 . AB=0.0652174;ABP=78.5398;AC=0;AF=0;AN=8;AO=3;CIGAR=8M3X5M;DP=152;DPB=148.188;DPRA=0;EPP=9.52472;EPPR=172.385;GTI=0;LEN=1;MEANALT=5;MQM=60;MQMR=60;NS=4;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=120;QR=3035;RO=78;RPL=0;RPP=9.52472;RPPR=172.385;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=78;SRP=172.385;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:70:37,29,2,0,0:37:1441:29,2,0,0:1086,80,0,0:-77.8515,0,-109.767,-82.3973,-111.906,-200.238,-88.9896,-118.497,-200.84,-207.431,-88.9896,-118.497,-200.84,-207.431,-207.431 0|0:46:20,18,0,3,3:20:772:18,0,3,3:670,0,120,122:-48.8255,0,-57.9962,-54.8461,-63.4147,-118.251,-44.957,-53.5272,-108.364,-107.461,-44.7779,-53.3482,-108.185,-98.2982,-107.282 0|0:29:17,11,0,0,0:17:662:11,0,0,0:427,0,0,0:-30.2422,0,-51.3775,-35.3597,-54.6888,-89.7803,-35.3597,-54.6888,-89.7803,-89.7803,-35.3597,-54.6888,-89.7803,-89.7803,-89.7803 0|0:7:4,1,2,0,0:4:160:1,2,0,0:32,79,0,0:-5.34663,-3.99729,-16.8799,0,-10.6816,-12.642,-6.55075,-17.1809,-13.244,-19.7481,-6.55075,-17.1809,-13.244,-19.7481,-19.7481 dDocent_Contig_16913 93 . C T 79.8604 . AB=0.228571;ABP=25.4075;AC=4;AF=0.5;AN=8;AO=8;CIGAR=1X;DP=35;DPB=35;DPRA=0;EPP=20.3821;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.962963;PAO=0;PQA=0;PQR=0;PRO=0;QA=262;QR=936;RO=27;RPL=8;RPP=20.3821;RPPR=61.6401;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:7:6,1:6:210:1:35:-1.39142,0,-17.1353 0/1:11:7,4:7:243:4:122:-7.9701,0,-18.8976 0/1:11:9,2:9:308:2:70:-3.33607,0,-24.7413 0/1:6:5,1:5:175:1:35:-1.69245,0,-14.2875 dDocent_Contig_16914 34 . G A 129.577 . AB=0.166667;ABP=55.1256;AC=3;AF=0.375;AN=8;AO=9;CIGAR=1X;DP=59;DPB=59;DPRA=3.6;EPP=22.5536;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.94;PAO=0;PQA=0;PQR=0;PRO=0;QA=354;QR=1970;RO=50;RPL=0;RPP=22.5536;RPPR=111.584;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5,0:5:177:0:0:0,-1.50515,-16.2686 0/1:9:7,2:7:269:2:81:-4.97646,0,-21.8589 0/1:34:28,6:28:1140:6:236:-11.3764,0,-92.6414 0/1:11:10,1:10:384:1:37:-0.386499,0,-31.5977 dDocent_Contig_16915 18 . T C 215.456 . AB=0.333333;ABP=9.52472;AC=2;AF=0.25;AN=8;AO=9;CIGAR=1X2M1X;DP=44;DPB=44;DPRA=1.58824;EPP=22.5536;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.222222;PAIREDR=0.971429;PAO=0;PQA=0;PQR=0;PRO=0;QA=359;QR=1387;RO=35;RPL=0;RPP=22.5536;RPPR=79.0118;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:9:9,0:9:361:0:0:0,-2.70927,-32.8545 0|1:18:13,5:13:520:5:201:-13.0526,0,-41.7297 0|1:9:5,4:5:195:4:158:-11.891,0,-15.2143 0|0:8:8,0:8:311:0:0:0,-2.40824,-28.3492 dDocent_Contig_16916 24 . G C 266.677 . AB=0.305556;ABP=14.8328;AC=2;AF=0.25;AN=8;AO=11;CIGAR=1X;DP=43;DPB=43;DPRA=5.14286;EPP=26.8965;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=446;QR=1267;RO=32;RPL=0;RPP=26.8965;RPPR=72.4974;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:6,8:6:234:8:324:-25.315,0,-17.2122 0/1:22:19,3:19:756:3:122:-4.74983,0,-61.7385 0/0:6:6,0:6:244:0:0:0,-1.80618,-22.3388 0/0:1:1,0:1:33:0:0:0,-0.30103,-3.29913 dDocent_Contig_16917 15 . C T 70.2757 . AB=0.114583;ABP=126.875;AC=3;AF=0.375;AN=8;AO=11;CIGAR=1X;DP=98;DPB=98;DPRA=16;EPP=26.8965;EPPR=191.928;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.0909091;PAIREDR=0.954023;PAO=0;PQA=0;PQR=0;PRO=0;QA=443;QR=3417;RO=87;RPL=0;RPP=26.8965;RPPR=191.928;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=87;SRP=191.928;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:62:55,7:55:2159:7:286:-7.45096,0,-175.822 0/1:20:18,2:18:704:2:82:-1.75908,0,-57.6583 0/1:14:12,2:12:486:2:75:-2.90438,0,-39.8772 0/0:2:2,0:2:68:0:0:0,-0.60206,-6.45641 dDocent_Contig_16918 112 . G A 423.059 . AB=0.470588;ABP=3.13803;AC=3;AF=0.5;AN=6;AO=17;CIGAR=1X;DP=35;DPB=35;DPRA=1.44444;EPP=39.9253;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=537;QR=590;RO=18;RPL=0;RPP=39.9253;RPPR=42.0968;RPR=17;RUN=1;SAF=0;SAP=39.9253;SAR=17;SRF=0;SRP=42.0968;SRR=18;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:9:9,0:9:277:0:0:0,-2.70927,-25.2297 0/1:17:9,8:9:313:8:254:-18.0534,0,-23.3895 1/1:9:0,9:0:0:9:283:-25.7753,-2.70927,0 ./.:.:.:.:.:.:.:. dDocent_Contig_16919 19 . T C 732.464 . AB=0.353659;ABP=18.2636;AC=4;AF=0.5;AN=8;AO=29;CIGAR=1X;DP=82;DPB=82;DPRA=0;EPP=65.983;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1154;QR=2137;RO=53;RPL=0;RPP=65.983;RPPR=118.098;RPR=29;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:14,5:14:564:5:196:-12.2944,0,-45.3832 0/1:30:18,12:18:724:12:470:-33.614,0,-56.4551 0/1:20:11,9:11:448:9:369:-27.5549,0,-34.6552 0/1:13:10,3:10:401:3:119:-7.18111,0,-32.5352 dDocent_Contig_16920 11 . A C 367.576 . AB=0.326531;ABP=15.8176;AC=3;AF=0.375;AN=8;AO=16;CIGAR=1X;DP=60;DPB=60;DPRA=1.48485;EPP=37.7539;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=0.75;PAIREDR=0.795455;PAO=0;PQA=0;PQR=0;PRO=0;QA=620;QR=1702;RO=44;RPL=0;RPP=37.7539;RPPR=98.5551;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:13,3:13:494:3:120:-6.37121,0,-39.9887 0/1:7:3,4:3:116:4:147:-11.4796,0,-8.70978 0/0:11:11,0:11:437:0:0:0,-3.31133,-39.6859 0/1:26:17,9:17:655:9:353:-24.3047,0,-51.4527 dDocent_Contig_16921 10 . T G 1789.25 . AB=0.477612;ABP=3.59368;AC=4;AF=0.5;AN=8;AO=64;CIGAR=1X;DP=134;DPB=134;DPRA=0;EPP=141.985;EPPR=155.013;GTI=0;LEN=1;MEANALT=1;MQM=58.2344;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.953125;PAIREDR=0.971429;PAO=0;PQA=0;PQR=0;PRO=0;QA=2559;QR=2567;RO=70;RPL=0;RPP=141.985;RPPR=155.013;RPR=64;RUN=1;SAF=64;SAP=141.985;SAR=0;SRF=70;SRP=155.013;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:49:25,24:25:905:24:962:-72.1249,0,-67.0134 0/1:48:26,22:26:969:22:879:-59.9901,0,-73.0724 0/1:20:10,10:10:373:10:399:-30.2484,0,-27.8989 0/1:17:9,8:9:320:8:319:-23.9591,0,-24.0232 dDocent_Contig_16923 8 . A T 380.806 . AB=0.355556;ABP=11.1654;AC=4;AF=0.5;AN=8;AO=16;CIGAR=1X1M;DP=45;DPB=45;DPRA=0;EPP=37.7539;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=6.93889e-18;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=620;QR=1043;RO=27;RPL=0;RPP=37.7539;RPPR=61.6401;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:7:5,0,2:5:194:0,2:0,77:-5.20193,-6.70708,-22.6492,0,-16.3277,-15.7256 0|1:20:8,2,10:8:309:2,10:78,388:-29.47,-25.4662,-50.2421,0,-18.9633,-22.3655 0|1:11:10,0,1:10:384:0,1:0,38:-0.485939,-3.49624,-35.0219,0,-31.9058,-31.6048 0|1:7:4,0,3:4:156:0,3:0,117:-8.80317,-10.0073,-22.8308,0,-13.2132,-12.3101 dDocent_Contig_16924 201 . A T 43.2154 . AB=0.666667;ABP=3.73412;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=21;DPB=21;DPRA=0.333333;EPP=7.35324;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=4.33681e-19;PAIRED=1;PAIREDR=0.947368;PAO=0;PQA=0;PQR=0;PRO=0;QA=74;QR=692;RO=19;RPL=2;RPP=7.35324;RPPR=44.2683;RPR=0;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=44.2683;SRR=19;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:6:6,0:6:220:0:0:0,-1.80618,-20.1555 0/0:12:12,0:12:435:0:0:0,-3.61236,-39.4916 0/1:3:1,2:1:37:2:74:-6.12279,0,-2.79474 ./.:.:.:.:.:.:.:. dDocent_Contig_16925 25 . T A 175.541 . AB=0.5;ABP=3.0103;AC=2;AF=0.25;AN=8;AO=8;CIGAR=1X;DP=65;DPB=65;DPRA=1.47222;EPP=20.3821;EPPR=126.784;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.875;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=312;QR=2284;RO=57;RPL=0;RPP=20.3821;RPPR=126.784;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:39:38,1:38:1516:1:41:0,-7.6456,-132.584 0/0:12:12,0:12:481:0:0:0,-3.61236,-43.6396 0/1:10:4,6:4:164:6:231:-18.1433,0,-12.1396 0/1:4:3,1:3:123:1:40:-2.79156,0,-10.2607 dDocent_Contig_16928 38 . C A 37.3698 . AB=0.15;ABP=24.2907;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=40;DPB=40;DPRA=2;EPP=9.52472;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.864865;PAO=0;PQA=0;PQR=0;PRO=0;QA=121;QR=1480;RO=37;RPL=0;RPP=9.52472;RPPR=83.3548;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:17,3:17:669:3:121:-5.2596,0,-54.5165 0/0:17:17,0:17:689:0:0:0,-5.11751,-62.3389 0/0:3:3,0:3:122:0:0:0,-0.90309,-11.3725 ./.:.:.:.:.:.:.:. dDocent_Contig_16930 9 . G A 4587.27 . AB=0.034045;ABP=3271.15;AC=0;AF=0;AN=8;AO=59;CIGAR=1X3M1X1M2X1M1X6M;DP=1733;DPB=1733.06;DPRA=0;EPP=131.127;EPPR=1523.04;GTI=0;LEN=1;MEANALT=29.75;MQM=44.678;MQMR=59.5457;NS=4;NUMALT=5;ODDS=0;PAIRED=0.983051;PAIREDR=0.971429;PAO=0;PQA=0;PQR=0;PRO=0;QA=2290;QR=27047;RO=700;RPL=0;RPP=131.127;RPPR=1523.04;RPR=59;RUN=1;SAF=59;SAP=131.127;SAR=0;SRF=700;SRP=1523.04;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:631:288,16,18,31,67,80:288:11132:16,18,31,67,80:631,700,1228,2658,3203:-175.755,-214.44,-1123.76,-204.933,-1071.06,-1113.65,-167.566,-1033.7,-1024.19,-1072.38,-44.2953,-910.43,-900.923,-863.557,-938.272,0,-866.137,-856.629,-819.263,-695.996,-890.065 0|0:589:205,34,38,28,58,81:205:7949:34,38,28,58,81:1327,1418,1121,2275,3250:-205.757,-162.768,-804.443,-154.63,-701.84,-795.1,-182.335,-729.545,-721.407,-825.815,-80.6752,-627.887,-619.749,-647.453,-715.126,0,-547.214,-539.076,-566.78,-465.122,-627.53 0|0:322:122,6,17,20,26,28:122:4730:6,17,20,26,28:237,603,797,1027,1113:-54.9127,-72.9724,-458.876,-45.5971,-414.64,-428.188,-35.3102,-404.354,-376.978,-416.999,-7.22532,-376.272,-348.896,-338.61,-387.111,0,-369.047,-341.671,-331.385,-303.302,-379.284 0|0:191:85,3,11,17,17,10:85:3236:3,11,17,17,10:95,416,655,673,399:-29.7008,-48.1906,-312.575,-22.1542,-280.347,-284.133,-5.18037,-263.374,-237.34,-265.354,0,-258.196,-232.162,-215.189,-260.177,-22.4243,-280.618,-254.584,-237.611,-232.433,-284.706 dDocent_Contig_16931 57 . 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G A 141.159 . AB=0.15873;ABP=66.7413;AC=3;AF=0.375;AN=8;AO=10;CIGAR=1X2M1X;DP=69;DPB=69;DPRA=3.5;EPP=24.725;EPPR=128.956;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=59.431;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.913793;PAO=0;PQA=0;PQR=0;PRO=0;QA=399;QR=2294;RO=58;RPL=0;RPP=24.725;RPPR=128.956;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:33:26,7:26:1034:7:278:-15.457,0,-83.4235 0|1:22:19,2:19:754:2:80:-0.870593,0,-61.4636 0|0:6:6,0:6:237:0:0:0,-1.80618,-21.7033 0|1:8:7,1:7:269:1:41:-1.68633,0,-21.0436 dDocent_Contig_16938 10 . G A 36.9115 . 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AB=0.426667;ABP=10.0169;AC=4;AF=0.5;AN=8;AO=64;CIGAR=1X;DP=150;DPB=150;DPRA=0;EPP=141.985;EPPR=189.757;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.78125;PAIREDR=0.755814;PAO=0;PQA=0;PQR=0;PRO=0;QA=2435;QR=3375;RO=86;RPL=0;RPP=141.985;RPPR=189.757;RPR=64;RUN=1;SAF=64;SAP=141.985;SAR=0;SRF=86;SRP=189.757;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:66:35,31:35:1365:31:1181:-86.7048,0,-103.237 0/1:57:37,20:37:1453:20:766:-52.1016,0,-113.863 0/1:16:7,9:7:275:9:334:-25.5906,0,-20.3008 0/1:11:7,4:7:282:4:154:-10.922,0,-22.4418 dDocent_Contig_16940 45 . G T 58.5243 . AB=0.25;ABP=9.52472;AC=1;AF=0.25;AN=4;AO=3;CIGAR=1X;DP=21;DPB=21;DPRA=1.33333;EPP=9.52472;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=123;QR=706;RO=18;RPL=0;RPP=9.52472;RPPR=42.0968;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:9:9,0:9:345:0:0:0,-2.70927,-31.4006 0/1:12:9,3:9:361:3:123:-7.85243,0,-29.2399 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_16941 9 . G A 1206.94 . AB=0.597222;ABP=8.92153;AC=4;AF=0.5;AN=8;AO=43;CIGAR=1X;DP=72;DPB=72;DPRA=0;EPP=96.3836;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1648;QR=1113;RO=29;RPL=0;RPP=96.3836;RPPR=65.983;RPR=43;RUN=1;SAF=43;SAP=96.3836;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:14,3:14:540:3:117:-5.79287,0,-43.8269 0/1:36:8,28:8:302:28:1074:-86.1286,0,-16.7008 0/1:4:3,1:3:117:1:39:-2.69244,0,-9.70626 0/1:15:4,11:4:154:11:418:-33.4563,0,-9.71801 dDocent_Contig_16942 107 . N T 321.885 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=10;CIGAR=1X;DP=10;DPB=10;DPRA=0;EPP=24.725;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=341;QR=0;RO=0;RPL=0;RPP=24.725;RPPR=0;RPR=10;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:6:0,6:0:0:6:202:-18.5106,-1.80618,0 1/1:2:0,2:0:0:2:69:-6.55266,-0.60206,0 ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:70:-6.6474,-0.60206,0 dDocent_Contig_16943 153 . G T 99.2778 . AB=0.144928;ABP=78.5712;AC=2;AF=0.25;AN=8;AO=11;CIGAR=1X;DP=87;DPB=87;DPRA=14.1667;EPP=26.8965;EPPR=90.593;GTI=0;LEN=1;MEANALT=1.33333;MQM=55.4545;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.28;PAO=0;PQA=0;PQR=0;PRO=0;QA=404;QR=2969;RO=75;RPL=0;RPP=26.8965;RPPR=165.871;RPR=11;RUN=1;SAF=0;SAP=26.8965;SAR=11;SRF=10;SRP=90.593;SRR=65;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:37:32,4:32:1262:4:129:-0.625587,0,-102.674 0/1:32:26,6:26:1036:6:234:-11.6217,0,-83.8978 0/0:16:15,1:15:593:1:41:0,-0.721913,-49.6077 0/0:2:2,0:2:78:0:0:0,-0.60206,-7.4033 dDocent_Contig_16944 57 . T G 918.042 . 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G A 73.8673 . AB=0.2;ABP=22.5536;AC=2;AF=0.25;AN=8;AO=5;CIGAR=1X2M1X;DP=62;DPB=62;DPRA=0.675676;EPP=13.8677;EPPR=126.784;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=195;QR=2175;RO=57;RPL=0;RPP=13.8677;RPPR=126.784;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:29:29,0:29:1110:0:0:0,-8.72987,-100.203 0|1:9:7,2:7:262:2:76:-4.5054,0,-21.2289 0|1:16:13,3:13:497:3:119:-6.27891,0,-40.2609 0|0:8:8,0:8:306:0:0:0,-2.40824,-27.9011 dDocent_Contig_16947 19 . T C 517.148 . AB=0.258427;ABP=48.1232;AC=3;AF=0.375;AN=8;AO=24;CIGAR=1X;DP=125;DPB=125;DPRA=0;EPP=55.1256;EPPR=222.329;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=961;QR=3777;RO=101;RPL=0;RPP=55.1256;RPPR=222.329;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=101;SRP=222.329;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:15,8:15:560:8:324:-22.6057,0,-43.8093 0/0:36:35,1:35:1302:1:41:0,-6.74251,-113.357 0/1:36:29,7:29:1096:7:276:-14.3707,0,-88.0914 0/1:30:22,8:22:819:8:320:-20.1364,0,-64.9922 dDocent_Contig_16948 16 . T C 1158.19 . AB=0.313333;ABP=48.4085;AC=3;AF=0.375;AN=8;AO=47;CIGAR=1X1M1X;DP=160;DPB=160;DPRA=5;EPP=105.07;EPPR=246.215;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.978723;PAIREDR=0.991071;PAO=0;PQA=0;PQR=0;PRO=0;QA=1835;QR=4347;RO=112;RPL=0;RPP=105.07;RPPR=246.215;RPR=47;RUN=1;SAF=47;SAP=105.07;SAR=0;SRF=112;SRP=246.215;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:36:29,7:29:1126:7:279:-14.6444,0,-90.7987 0|1:83:47,35:47:1820:35:1359:-97.7976,0,-139.254 0|1:31:26,5:26:1006:5:197:-8.77464,0,-81.5143 0|0:10:10,0:10:395:0:0:0,-3.0103,-35.9095 dDocent_Contig_16949 18 . A G 253.042 . AB=0.261905;ABP=23.691;AC=1;AF=0.166667;AN=6;AO=11;CIGAR=1X1M1X;DP=60;DPB=60;DPRA=4.66667;EPP=26.8965;EPPR=105.07;GTI=0;LEN=1;MEANALT=2;MQM=56.7273;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.272727;PAIREDR=0.957447;PAO=0;PQA=0;PQR=0;PRO=0;QA=440;QR=1856;RO=47;RPL=0;RPP=26.8965;RPPR=105.07;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. 0|1:42:30,11:30:1190:11:440:-26.8267,0,-94.6329 0|0:16:15,0:15:588:0:0:0,-4.51545,-52.848 0|0:2:2,0:2:78:0:0:0,-0.60206,-7.40278 dDocent_Contig_16950 51 . T G 86.0878 . AB=0.152174;ABP=51.3492;AC=2;AF=0.25;AN=8;AO=8;CIGAR=1X5M;DP=66;DPB=69.5;DPRA=3.33333;EPP=20.3821;EPPR=113.755;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=308;QR=1965;RO=51;RPL=8;RPP=20.3821;RPPR=113.755;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:13:8,2,1,2:8:316:2,1,2:64,32,82:-4.40774,-2.23153,-27.6515,-4.51977,-25.9552,-30.2525,0,-21.4806,-23.7794,-25.4779 0|1:33:26,0,2,5:26:986:0,2,5:0,22,186:-7.59653,-15.4233,-96.3329,-14.6384,-95.4831,-94.881,0,-81.1146,-80.268,-79.6094 0|0:14:13,0,0,1:13:505:0,0,1:0,0,40:0,-3.91339,-45.3978,-3.91339,-45.3978,-45.3978,-0.218741,-42.1019,-42.1019,-41.8008 0|0:6:4,0,2,0:4:158:0,2,0:0,22,0:0,-1.20412,-14.4147,-0.254696,-13.6512,-13.0492,-1.20412,-14.4147,-13.6512,-14.4147 dDocent_Contig_16951 197 . C A 158.179 . AB=0.35;ABP=6.91895;AC=2;AF=0.25;AN=8;AO=7;CIGAR=1X;DP=37;DPB=37;DPRA=1.17647;EPP=18.2106;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=272;QR=1146;RO=30;RPL=7;RPP=18.2106;RPPR=68.1545;RPR=0;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=68.1545;SRR=30;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:7:7,0:7:273:0:0:0,-2.10721,-24.938 0/0:10:10,0:10:374:0:0:0,-3.0103,-34.0091 0/1:8:6,2:6:227:2:78:-4.99523,0,-18.3842 0/1:12:7,5:7:272:5:194:-14.2205,0,-21.2349 dDocent_Contig_16953 8 . A G 358.156 . AB=0.08;ABP=41.3151;AC=3;AF=0.5;AN=6;AO=13;CIGAR=1X2M1X3M1X;DP=54;DPB=55.625;DPRA=0;EPP=31.2394;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=511;QR=1552;RO=40;RPL=0;RPP=31.2394;RPPR=89.8692;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. 0|0:19:17,1:17:664:1:39:0,-1.74816,-56.3439 0|1:25:23,2:23:888:2:80:-0.0660406,0,-72.7087 1|1:10:0,10:0:0:10:392:-35.6378,-3.0103,0 dDocent_Contig_16954 141 . A G 30.1447 . AB=0.4;ABP=3.44459;AC=2;AF=0.25;AN=8;AO=4;CIGAR=1X;DP=63;DPB=63;DPRA=0.833333;EPP=11.6962;EPPR=131.127;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=160;QR=2314;RO=59;RPL=0;RPP=11.6962;RPPR=131.127;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=131.127;SRR=59;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:40:38,2:38:1520:2:81:0,-4.35547,-129.35 0/0:18:18,0:18:676:0:0:0,-5.41854,-61.1516 0/1:3:2,1:2:81:1:38:-2.89418,0,-6.78264 0/1:2:1,1:1:37:1:41:-3.49251,0,-3.09577 dDocent_Contig_16955 9 . G A 71.2191 . AB=0.131148;ABP=75.0961;AC=2;AF=0.25;AN=8;AO=9;CIGAR=1X2M1X;DP=87;DPB=87;DPRA=3.29167;EPP=22.5536;EPPR=172.385;GTI=0;LEN=1;MEANALT=1;MQM=53;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=354;QR=3054;RO=78;RPL=0;RPP=22.5536;RPPR=172.385;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=78;SRP=172.385;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:35:31,4:31:1217:4:156:-3.79229,0,-99.2792 0|1:26:22,4:22:853:4:158:-6.72577,0,-69.2596 0|0:18:17,1:17:664:1:40:0,-1.45173,-56.1269 0|0:8:8,0:8:320:0:0:0,-2.40824,-29.1685 dDocent_Contig_16956 141 . C T 105.349 . AB=0.24;ABP=17.6895;AC=2;AF=0.25;AN=8;AO=6;CIGAR=1X;DP=41;DPB=41;DPRA=1.5625;EPP=16.0391;EPPR=70.5741;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.1143;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=0.971429;PAO=0;PQA=0;PQR=0;PRO=0;QA=230;QR=1334;RO=35;RPL=0;RPP=16.0391;RPPR=79.0118;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=1;SRP=70.5741;SRR=34;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:18,5:18:694:5:194:-10.9092,0,-55.8703 0/0:12:12,0:12:458:0:0:0,-3.61236,-41.5693 0/0:4:4,0:4:148:0:0:0,-1.20412,-12.5488 0/1:2:1,1:1:34:1:36:-2.99621,0,-2.79685 dDocent_Contig_16957 18 . A G 217.813 . AB=0.2;ABP=53.8228;AC=3;AF=0.375;AN=8;AO=13;CIGAR=1X;DP=89;DPB=89;DPRA=0.902778;EPP=31.2394;EPPR=168.042;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.230769;PAIREDR=0.618421;PAO=0;PQA=0;PQR=0;PRO=0;QA=507;QR=3047;RO=76;RPL=0;RPP=31.2394;RPPR=168.042;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=76;SRP=168.042;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:17,4:17:684:4:145:-7.07902,0,-55.5685 0/1:23:18,5:18:724:5:202:-11.6384,0,-58.5616 0/0:24:24,0:24:964:0:0:0,-7.22472,-87.0585 0/1:21:17,4:17:675:4:160:-8.4618,0,-54.7536 dDocent_Contig_16958 52 . T A 885.423 . AB=0.408163;ABP=6.59988;AC=4;AF=0.666667;AN=6;AO=30;CIGAR=1X;DP=59;DPB=59;DPRA=0;EPP=68.1545;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1175;QR=1152;RO=29;RPL=30;RPP=68.1545;RPPR=65.983;RPR=0;RUN=1;SAF=30;SAP=68.1545;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:10:0,10:0:0:10:384:-34.9118,-3.0103,0 0/1:26:15,11:15:603:11:435:-31.6746,0,-46.7812 0/1:23:14,9:14:549:9:356:-25.4788,0,-42.8274 dDocent_Contig_16959 124 . T C 464.855 . AB=0.360656;ABP=23.5859;AC=4;AF=0.5;AN=8;AO=44;CIGAR=1X;DP=122;DPB=122;DPRA=0;EPP=98.5551;EPPR=172.385;GTI=0;LEN=1;MEANALT=1;MQM=23.8182;MQMR=41.2821;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.717949;PAO=0;PQA=0;PQR=0;PRO=0;QA=1499;QR=2637;RO=78;RPL=0;RPP=98.5551;RPPR=172.385;RPR=44;RUN=1;SAF=0;SAP=98.5551;SAR=44;SRF=0;SRP=172.385;SRR=78;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:19,6:19:639:6:202:-4.97363,0,-46.0357 0/1:40:22,18:22:759:18:601:-24.5728,0,-51.8886 0/1:42:25,17:25:814:17:592:-22.267,0,-45.4371 0/1:15:12,3:12:425:3:104:-1.84436,0,-29.4946 dDocent_Contig_16960 52 . G C 143.639 . AB=0.555556;ABP=3.25157;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=32;DPB=32;DPRA=1.17391;EPP=13.8677;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=201;QR=1041;RO=27;RPL=5;RPP=13.8677;RPPR=61.6401;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:4,5:4:161:5:201:-15.7612,0,-12.1662 0/0:10:10,0:10:388:0:0:0,-3.0103,-35.2733 0/0:12:12,0:12:452:0:0:0,-3.61236,-41.0129 0/0:1:1,0:1:40:0:0:0,-0.30103,-3.99568 dDocent_Contig_16961 20 . T C 840.134 . AB=0.185185;ABP=26.2531;AC=5;AF=0.625;AN=8;AO=5;CIGAR=1X2M3D1M;DP=58;DPB=55.8571;DPRA=3.375;EPP=13.8677;EPPR=55.1256;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=199;QR=922;RO=24;RPL=0;RPP=13.8677;RPPR=55.1256;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:2:1,1,0:1:39:1,0:40,0:-3.39362,0,-3.2945,-3.69465,-3.59553,-6.89557 0|1:27:14,8,5:14:533:8,5:321,199:-22.2372,0,-41.2966,-10.0672,-27.3147,-52.2666 1|1:8:0,8,0:0:0:8,0:303,0:-27.6253,-2.40824,0,-27.6253,-2.40824,-27.6253 0|1:21:9,12,0:9:350:12,0:468,0:-36.1453,0,-25.5394,-38.8546,-29.1518,-67.6173 dDocent_Contig_16962 10 . G A 55.4715 . AB=0.0555556;ABP=64.7766;AC=0;AF=0;AN=8;AO=2;CIGAR=1X1M1X2M;DP=114;DPB=114;DPRA=1.63636;EPP=7.35324;EPPR=217.986;GTI=0;LEN=1;MEANALT=2;MQM=49;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=0.545455;PAO=0;PQA=0;PQR=0;PRO=0;QA=78;QR=3881;RO=99;RPL=0;RPP=7.35324;RPPR=217.986;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=99;SRP=217.986;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:36:29,2,5,0:29:1138:2,5,0:78,192,0:-1.2637,-3.61521,-96.714,0,-87.2507,-92.0868,-9.99357,-97.316,-93.592,-103.659 0|0:25:22,0,0,2:22:849:0,0,2:0,0,79:0,-6.62266,-76.3392,-6.62266,-76.3392,-76.3392,-0.100194,-69.839,-69.839,-69.237 0|0:34:29,0,0,5:29:1152:0,0,5:0,0,190:-7.22581,-15.9557,-110.812,-15.9557,-110.812,-110.812,0,-95.2384,-95.2384,-93.7333 0|0:19:19,0,0,0:19:742:0,0,0:0,0,0:0,-5.71957,-67.1083,-5.71957,-67.1083,-67.1083,-5.71957,-67.1083,-67.1083,-67.1083 dDocent_Contig_16963 138 . C G 67.5872 . AB=0;ABP=0;AC=2;AF=0.25;AN=8;AO=6;CIGAR=1X;DP=160;DPB=160;DPRA=3;EPP=16.0391;EPPR=337.417;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=212;QR=5157;RO=154;RPL=0;RPP=16.0391;RPPR=337.417;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=337.417;SRR=154;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:118:114,4:114:3817:4:144:0,-22.2084,-330.43 0/0:30:30,0:30:1014:0:0:0,-9.0309,-91.5661 0/0:10:10,0:10:326:0:0:0,-3.0103,-29.6566 1/1:2:0,2:0:0:2:68:-6.45742,-0.60206,0 dDocent_Contig_16964 183 . G A 63.5385 . AB=0.3;ABP=6.48466;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=19;DPB=19;DPRA=2.22222;EPP=9.52472;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=120;QR=616;RO=16;RPL=3;RPP=9.52472;RPPR=37.7539;RPR=0;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=37.7539;SRR=16;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:2:2,0:2:76:0:0:0,-0.60206,-7.21481 0/1:10:7,3:7:270:3:120:-8.17739,0,-21.6534 0/0:7:7,0:7:270:0:0:0,-2.10721,-24.661 ./.:.:.:.:.:.:.:. dDocent_Contig_16966 10 . G A 52.4329 . AB=0.3;ABP=6.48466;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=86;DPB=86;DPRA=0.394737;EPP=9.52472;EPPR=183.243;GTI=0;LEN=1;MEANALT=1;MQM=37;MQMR=49.6747;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.228916;PAO=0;PQA=0;PQR=0;PRO=0;QA=123;QR=3299;RO=83;RPL=0;RPP=9.52472;RPPR=183.243;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=83;SRP=183.243;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:30:30,0:30:1184:0:0:0,-9.0309,-106.363 0/0:20:20,0:20:790:0:0:0,-6.0206,-67.3477 0/0:26:26,0:26:1047:0:0:0,-7.82678,-79.8558 0/1:10:7,3:7:278:3:123:-6.94226,0,-22.3558 dDocent_Contig_16967 152 . C T 346.691 . AB=0.464286;ABP=3.32051;AC=3;AF=0.375;AN=8;AO=13;CIGAR=1X;DP=29;DPB=29;DPRA=9.33333;EPP=31.2394;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=526;QR=608;RO=16;RPL=0;RPP=31.2394;RPPR=37.7539;RPR=13;RUN=1;SAF=0;SAP=31.2394;SAR=13;SRF=0;SRP=37.7539;SRR=16;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:7,4:7:248:4:159:-11.381,0,-19.338 0/1:10:5,5:5:199:5:203:-15.6428,0,-15.2781 0/0:1:1,0:1:40:0:0:0,-0.30103,-3.99568 0/1:7:3,4:3:121:4:164:-13.0427,0,-9.17299 dDocent_Contig_16968 39 . C T 620.919 . AB=0.342466;ABP=18.746;AC=3;AF=0.375;AN=8;AO=26;CIGAR=1X;DP=99;DPB=99;DPRA=0;EPP=59.4686;EPPR=161.528;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.384615;PAIREDR=0.767123;PAO=0;PQA=0;PQR=0;PRO=0;QA=1020;QR=2899;RO=73;RPL=0;RPP=59.4686;RPPR=161.528;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=73;SRP=161.528;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:37:32,5:32:1273:5:198:-7.05836,0,-103.696 0/1:17:9,8:9:361:8:322:-24.2308,0,-27.7355 0/0:26:25,1:25:979:1:38:0,-4.02951,-84.6118 0/1:19:7,12:7:286:12:462:-36.2007,0,-20.3952 dDocent_Contig_16969 39 . A G 87.356 . AB=0.333333;ABP=5.9056;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=43;DPB=43;DPRA=1.16129;EPP=11.6962;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.923077;PAO=0;PQA=0;PQR=0;PRO=0;QA=152;QR=1559;RO=39;RPL=0;RPP=11.6962;RPPR=87.6977;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:21:21,0:21:839:0:0:0,-6.32163,-75.8255 0/1:12:8,4:8:318:4:152:-10.4344,0,-25.3735 0/0:7:7,0:7:279:0:0:0,-2.10721,-25.4802 0/0:3:3,0:3:123:0:0:0,-0.90309,-11.4648 dDocent_Contig_16971 16 . T C 795.641 . AB=0.379747;ABP=12.9331;AC=4;AF=0.5;AN=8;AO=30;CIGAR=1X;DP=79;DPB=79;DPRA=0;EPP=68.1545;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.933333;PAIREDR=0.877551;PAO=0;PQA=0;PQR=0;PRO=0;QA=1214;QR=1959;RO=49;RPL=0;RPP=68.1545;RPPR=109.412;RPR=30;RUN=1;SAF=30;SAP=68.1545;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:16,8:16:624:8:317:-21.6693,0,-49.2635 0/1:24:18,6:18:730:6:243:-15.0235,0,-58.7998 0/1:22:9,13:9:362:13:531:-41.5137,0,-26.3219 0/1:9:6,3:6:243:3:123:-8.75552,0,-19.5389 dDocent_Contig_16972 19 . C T 89.0484 . AB=0.2;ABP=22.5536;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=104;DPB=104;DPRA=0.949367;EPP=13.8677;EPPR=217.986;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.979798;PAO=0;PQA=0;PQR=0;PRO=0;QA=194;QR=3780;RO=99;RPL=0;RPP=13.8677;RPPR=217.986;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=99;SRP=217.986;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:20,5:20:773:5:194:-10.3028,0,-62.3611 0/0:38:38,0:38:1439:0:0:0,-11.4391,-129.778 0/0:28:28,0:28:1072:0:0:0,-8.42884,-96.7712 0/0:13:13,0:13:496:0:0:0,-3.91339,-44.9816 dDocent_Contig_16973 31 . A G 556.511 . AB=0.343284;ABP=17.3031;AC=4;AF=0.5;AN=8;AO=23;CIGAR=1X;DP=67;DPB=67;DPRA=0;EPP=10.6577;EPPR=31.4368;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.695652;PAIREDR=0.636364;PAO=0;PQA=0;PQR=0;PRO=0;QA=904;QR=1715;RO=44;RPL=0;RPP=52.9542;RPPR=98.5551;RPR=23;RUN=1;SAF=16;SAP=10.6577;SAR=7;SRF=34;SRP=31.4368;SRR=10;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:18,2:18:713:2:81:-1.66513,0,-58.473 0/1:27:15,12:15:559:12:479:-35.333,0,-42.5062 0/1:17:9,8:9:361:8:310:-23.1427,0,-27.7364 0/1:3:2,1:2:82:1:34:-2.49582,0,-6.87659 dDocent_Contig_16974 59 . T C 643.446 . AB=0.4;ABP=6.05036;AC=6;AF=0.75;AN=8;AO=23;CIGAR=1X;DP=44;DPB=44;DPRA=0;EPP=52.9542;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=854;QR=747;RO=21;RPL=23;RPP=52.9542;RPPR=48.6112;RPR=0;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:5:0,5:0:0:5:176:-16.1806,-1.50515,0 0/1:14:9,5:9:320:5:186:-12.8845,0,-24.9258 0/1:21:12,9:12:427:9:344:-24.9963,0,-32.4392 1/1:4:0,4:0:0:4:148:-13.681,-1.20412,0 dDocent_Contig_16975 17 . T A 171.375 . AB=0.266667;ABP=17.1973;AC=2;AF=0.25;AN=8;AO=8;CIGAR=1X;DP=54;DPB=54;DPRA=1.25;EPP=20.3821;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=320;QR=1822;RO=46;RPL=0;RPP=20.3821;RPPR=102.898;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:15:15,0:15:601:0:0:0,-4.51545,-54.4296 0/0:9:9,0:9:351:0:0:0,-2.70927,-31.9479 0/1:23:19,4:19:751:4:157:-7.5842,0,-60.9913 0/1:7:3,4:3:119:4:163:-12.9512,0,-8.9878 dDocent_Contig_16976 106 . N T 881.793 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=30;CIGAR=2X;DP=30;DPB=30;DPRA=0;EPP=68.1545;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=959;QR=0;RO=0;RPL=0;RPP=68.1545;RPPR=0;RPR=30;RUN=1;SAF=0;SAP=68.1545;SAR=30;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:6:0,6:0:0:6:199:-18.2357,-1.80618,0 1|1:10:0,10:0:0:10:294:-26.7458,-3.0103,0 1|1:8:0,8:0:0:8:259:-23.6275,-2.40824,0 1|1:6:0,6:0:0:6:207:-18.9682,-1.80618,0 dDocent_Contig_16977 1 . N G 226.768 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=6;CIGAR=1X;DP=6;DPB=6;DPRA=0;EPP=16.0391;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0.833333;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=240;QR=0;RO=0;RPL=0;RPP=16.0391;RPPR=0;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:121:-11.2802,-0.90309,0 1/1:3:0,3:0:0:3:119:-11.095,-0.90309,0 dDocent_Contig_16978 42 . T G 309.838 . AB=0.363636;ABP=8.34028;AC=2;AF=0.25;AN=8;AO=13;CIGAR=1X;DP=60;DPB=60;DPRA=1.48485;EPP=31.2394;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.702128;PAO=0;PQA=0;PQR=0;PRO=0;QA=524;QR=1867;RO=47;RPL=0;RPP=31.2394;RPPR=105.07;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:16:15,1:15:607:1:40:0,-0.820801,-50.9724 0/1:12:5,7:5:190:7:281:-22.0502,0,-13.8514 0/0:11:11,0:11:442:0:0:0,-3.31133,-40.1358 0/1:21:16,5:16:628:5:203:-12.3314,0,-50.5306 dDocent_Contig_16979 9 . G T 516.098 . AB=0.441176;ABP=4.03217;AC=6;AF=0.75;AN=8;AO=18;CIGAR=2X;DP=37;DPB=37;DPRA=0;EPP=42.0968;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=708;QR=742;RO=19;RPL=0;RPP=42.0968;RPPR=44.2683;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:1:0,1:0:0:1:40:-3.99568,-0.30103,0 0|1:22:12,10:12:469:10:391:-28.9252,0,-35.9386 1|1:2:0,2:0:0:2:80:-7.59179,-0.60206,0 0|1:12:7,5:7:273:5:197:-14.4942,0,-21.3249 dDocent_Contig_16980 7 . A T 209.079 . AB=0.30303;ABP=14.1309;AC=3;AF=0.375;AN=8;AO=10;CIGAR=1X;DP=44;DPB=44;DPRA=1;EPP=24.725;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=390;QR=1300;RO=34;RPL=0;RPP=24.725;RPPR=76.8404;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:8,5:8:305:5:195:-14.0108,0,-23.8958 0/1:12:10,2:10:381:2:78:-3.79111,0,-31.0322 0/1:8:5,3:5:188:3:117:-8.50214,0,-14.875 0/0:11:11,0:11:426:0:0:0,-3.31133,-38.6947 dDocent_Contig_16981 11 . A G 411.013 . AB=0.4;ABP=3.44459;AC=3;AF=0.375;AN=8;AO=2;CIGAR=1X3M1X2M;DP=33;DPB=33;DPRA=0;EPP=7.35324;EPPR=39.9253;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=75;QR=672;RO=17;RPL=0;RPP=7.35324;RPPR=39.9253;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:12:10,0,0,2:10:395:0,0,2:0,0,79:-3.83349,-6.84379,-39.3497,-6.84379,-39.3497,-39.3497,0,-32.8983,-32.8983,-32.2962 0|0:8:7,0,0,1:7:277:0,0,1:0,0,40:-1.58744,-3.69465,-26.4884,-3.69465,-26.4884,-26.4884,0,-23.1928,-23.1928,-22.8918 1|1:5:0,3,2,0:0:0:3,2,0:118,75,0:-16.2056,-6.51804,-5.61495,-10.0692,0,-9.46712,-16.2056,-6.51804,-10.0692,-16.2056 1|0:8:0,3,0,5:0:0:3,0,5:120,0,197:-26.4185,-16.5653,-15.6622,-26.4185,-16.5653,-26.4185,-10.2494,0,-10.2494,-8.74429 dDocent_Contig_16982 111 . C G 123.932 . AB=0;ABP=0;AC=4;AF=0.5;AN=8;AO=5;CIGAR=1X;DP=17;DPB=17;DPRA=0.47619;EPP=13.8677;EPPR=29.068;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=131;QR=380;RO=12;RPL=0;RPP=13.8677;RPPR=29.068;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=29.068;SRR=12;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:91:-8.49117,-0.90309,0 1/1:1:0,1:0:0:1:33:-3.29913,-0.30103,0 0/0:7:7,0:7:219:0:0:0,-2.10721,-20.0184 0/0:6:5,1:5:161:1:7:0,-1.10618,-14.1082 dDocent_Contig_16983 7 . A T 143.113 . AB=0.28;ABP=13.5202;AC=2;AF=0.25;AN=8;AO=7;CIGAR=1X;DP=42;DPB=42;DPRA=1.47059;EPP=18.2106;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.857143;PAIREDR=0.8;PAO=0;PQA=0;PQR=0;PRO=0;QA=272;QR=1328;RO=35;RPL=0;RPP=18.2106;RPPR=79.0118;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:7,3:7:269:3:116:-7.8074,0,-21.5644 0/1:15:11,4:11:429:4:156:-9.90184,0,-34.4502 0/0:7:7,0:7:263:0:0:0,-2.10721,-24.028 0/0:10:10,0:10:367:0:0:0,-3.0103,-33.3755 dDocent_Contig_16984 1 . N G 76.8682 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:81:-7.68573,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_16985 10 . C A 49.4366 . AB=0.117647;ABP=89.3583;AC=2;AF=0.25;AN=8;AO=12;CIGAR=1X;DP=149;DPB=149;DPRA=0;EPP=5.9056;EPPR=250.669;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.2701;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.554745;PAO=0;PQA=0;PQR=0;PRO=0;QA=460;QR=5454;RO=137;RPL=0;RPP=29.068;RPPR=300.502;RPR=12;RUN=1;SAF=8;SAP=5.9056;SAR=4;SRF=131;SRP=250.669;SRR=6;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:44:40,4:40:1586:4:149:-0.526912,0,-129.675 0/0:38:36,2:36:1451:2:80:0,-3.84735,-123.205 0/0:43:41,2:41:1620:2:81:0,-5.25856,-138.32 0/1:24:20,4:20:797:4:150:-6.63898,0,-63.7812 dDocent_Contig_16986 162 . T C 584.018 . AB=0;ABP=0;AC=2;AF=0.25;AN=8;AO=17;CIGAR=1X;DP=42;DPB=42;DPRA=2.04;EPP=39.9253;EPPR=41.3151;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=642;QR=950;RO=25;RPL=17;RPP=39.9253;RPPR=41.3151;RPR=0;RUN=1;SAF=0;SAP=39.9253;SAR=17;SRF=0;SRP=57.2971;SRR=25;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:14:14,0:14:529:0:0:0,-4.21442,-47.9392 1/1:17:0,17:0:0:17:642:-58.1007,-5.11751,0 0/0:7:7,0:7:271:0:0:0,-2.10721,-24.7533 0/0:4:4,0:4:150:0:0:0,-1.20412,-13.8607 dDocent_Contig_16988 86 . T A 816.991 . AB=0.58;ABP=5.78978;AC=4;AF=0.5;AN=8;AO=29;CIGAR=1X3M;DP=52;DPB=52;DPRA=8.33333;EPP=65.983;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=983;QR=595;RO=18;RPL=29;RPP=65.983;RPPR=42.0968;RPR=0;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:14:0,4,10:0:0:4,10:139,325:-37.8629,-26.5553,-25.3512,-11.6486,0,-8.63827 0|1:18:10,0,7:10:328:0,7:0,245:-17.1512,-20.1615,-46.6686,0,-26.7175,-24.6103 0|1:18:6,0,12:6:199:0,12:0,413:-32.0823,-33.8885,-49.9833,0,-16.4305,-12.8181 0|0:2:2,0,0:2:68:0,0:0,0:0,-0.60206,-6.45793,-0.60206,-6.45793,-6.45793 dDocent_Contig_16990 33 . T G 57.8428 . AB=0.151515;ABP=37.8197;AC=2;AF=0.25;AN=8;AO=5;CIGAR=1X;DP=49;DPB=49;DPRA=2.0625;EPP=13.8677;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=198;QR=1774;RO=44;RPL=0;RPP=13.8677;RPPR=98.5551;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:13:13,0:13:529:0:0:0,-3.91339,-47.9566 0/1:24:20,4:20:807:4:159:-7.46672,0,-65.7224 0/1:9:8,1:8:318:1:39:-1.18729,0,-26.277 0/0:3:3,0:3:120:0:0:0,-0.90309,-11.1877 dDocent_Contig_16991 14 . G A 1288.93 . AB=0.0588235;ABP=60.4905;AC=0;AF=0;AN=8;AO=2;CIGAR=1X1M1X1M;DP=80;DPB=80;DPRA=0;EPP=7.35324;EPPR=55.1256;GTI=0;LEN=1;MEANALT=5;MQM=60;MQMR=60;NS=4;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=80;QR=954;RO=24;RPL=0;RPP=7.35324;RPPR=55.1256;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:28:8,0,0,16,4:8:318:0,0,16,4:0,0,638,160:-50.1296,-52.5379,-78.7186,-52.5379,-78.7186,-78.7186,0,-26.1795,-26.1795,-21.363,-39.3578,-65.5386,-65.5386,-12.9989,-64.3345 0|0:34:11,2,2,2,16:11:435:2,2,2,16:80,77,82,623:-47.8794,-44.5999,-79.7973,-44.8691,-74.0777,-80.0661,-44.4207,-73.6299,-73.8988,-79.6185,0,-29.209,-29.4787,-29.0296,-30.9832 0|0:11:3,0,0,8,0:3:119:0,0,8,0:0,0,320,0:-25.8554,-26.7585,-36.5537,-26.7585,-36.5537,-36.5537,0,-10.1923,-10.1923,-7.78406,-26.7585,-36.5537,-36.5537,-10.1923,-36.5537 0|0:7:2,0,0,4,1:2:82:0,0,4,1:0,0,158,36:-12.4264,-13.0285,-19.8029,-13.0285,-19.8029,-19.8029,0,-6.80125,-6.80125,-5.59713,-10.098,-16.8711,-16.8711,-3.88037,-16.5701 dDocent_Contig_16993 12 . G A 42.6983 . AB=0.1875;ABP=16.582;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=29;DPB=29;DPRA=2.46154;EPP=9.52472;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=0.884615;PAO=0;PQA=0;PQR=0;PRO=0;QA=117;QR=998;RO=26;RPL=0;RPP=9.52472;RPPR=59.4686;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 0/0:11:11,0:11:426:0:0:0,-3.31133,-38.6903 0/1:16:13,3:13:523:3:117:-6.09335,0,-42.5996 0/0:2:2,0:2:49:0:0:0,-0.60206,-4.64984 dDocent_Contig_16994 105 . N A 284.453 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=19;CIGAR=2X;DP=19;DPB=19;DPRA=0;EPP=44.2683;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=16.6842;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=636;QR=0;RO=0;RPL=0;RPP=44.2683;RPPR=0;RPR=19;RUN=1;SAF=0;SAP=44.2683;SAR=19;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:9:0,9:0:0:9:286:-16.1781,-2.70927,0 1|1:8:0,8:0:0:8:279:-8.01785,-2.40824,0 1|1:1:0,1:0:0:1:36:-0.999019,-0.30103,0 1|1:1:0,1:0:0:1:35:-2.63623,-0.30103,0 dDocent_Contig_16995 19 . T C 165.899 . AB=0.269231;ABP=15.0369;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=88;DPB=88;DPRA=0.833333;EPP=12.7819;EPPR=168.151;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.125;PAIREDR=0.975;PAO=0;PQA=0;PQR=0;PRO=0;QA=327;QR=3104;RO=80;RPL=0;RPP=20.3821;RPPR=176.728;RPR=8;RUN=1;SAF=7;SAP=12.7819;SAR=1;SRF=79;SRP=168.151;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:31:31,0:31:1236:0:0:0,-9.33193,-111.512 0/1:26:19,7:19:732:7:286:-18.288,0,-58.3723 0/0:14:13,1:13:461:1:41:0,-0.119853,-37.7091 0/0:17:17,0:17:675:0:0:0,-5.11751,-61.0772 dDocent_Contig_16996 107 . N A 52.25 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=55;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:55:-5.22391,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_16997 11 . A G 5009.6 . AB=0.0588235;ABP=261.671;AC=1;AF=0.125;AN=8;AO=9;CIGAR=2X3M1X3M1X;DP=232;DPB=232;DPRA=0;EPP=22.5536;EPPR=85.5263;GTI=0;LEN=1;MEANALT=5.5;MQM=60;MQMR=60;NS=4;NUMALT=5;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=340;QR=1457;RO=38;RPL=0;RPP=22.5536;RPPR=85.5263;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:79:3,0,7,0,1,65:3:115:0,7,0,1,65:0,267,0,18,2432:-210.737,-211.64,-221.079,-189.735,-199.174,-197.067,-211.64,-221.079,-199.174,-221.079,-210.324,-219.763,-197.858,-219.763,-219.462,-12.4741,-21.917,0,-21.917,-20.6125,-2.35006 0|0:74:26,0,2,3,6,35:26:989:0,2,3,6,35:0,73,116,242,1326:-100.893,-108.72,-189.831,-102.756,-183.868,-183.266,-99.1906,-180.303,-174.339,-179.399,-88.7678,-169.881,-163.918,-160.352,-168.075,0,-81.1177,-75.1545,-71.5886,-61.165,-70.5816 0|0:52:9,0,0,0,0,43:9:353:0,0,0,0,43:0,0,0,0,1561:-125.103,-127.812,-156.849,-127.812,-156.849,-156.849,-127.812,-156.849,-156.849,-156.849,-127.812,-156.849,-156.849,-156.849,-156.849,0,-29.4228,-29.4228,-29.4228,-29.4228,-16.4785 0|0:27:0,4,0,3,0,20:0:0:4,0,3,0,20:144,0,104,0,732:-71.5789,-59.831,-58.6269,-71.5789,-59.831,-71.5789,-63.1292,-51.3818,-63.1292,-62.2261,-71.5789,-59.831,-71.5789,-63.1292,-71.5789,-11.756,0,-11.756,-3.30996,-11.756,-5.7354 dDocent_Contig_16998 14 . C A 39.5459 . AB=0.157895;ABP=22.325;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=32;DPB=32;DPRA=4.38462;EPP=9.52472;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=1168;RO=29;RPL=0;RPP=9.52472;RPPR=65.983;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:6:6,0:6:242:0:0:0,-1.80618,-22.1569 0/1:19:16,3:16:645:3:122:-5.65292,0,-52.6647 0/0:1:1,0:1:41:0:0:0,-0.30103,-4.09457 0/0:6:6,0:6:240:0:0:0,-1.80618,-21.9754 dDocent_Contig_17001 66 . G T 163.978 . AB=0.230769;ABP=27.5646;AC=3;AF=0.375;AN=8;AO=9;CIGAR=1X;DP=58;DPB=58;DPRA=0.684211;EPP=22.5536;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=359;QR=1878;RO=49;RPL=9;RPP=22.5536;RPPR=109.412;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:19:19,0:19:732:0:0:0,-5.71957,-66.2041 0/1:22:17,5:17:666:5:199:-11.6648,0,-53.6507 0/1:11:8,3:8:299:3:120:-7.87636,0,-23.952 0/1:6:5,1:5:181:1:40:-2.1895,0,-14.8324 dDocent_Contig_17002 13 . C A 852.045 . AB=0.349206;ABP=15.4532;AC=5;AF=0.625;AN=8;AO=30;CIGAR=1X;DP=71;DPB=71;DPRA=0;EPP=68.1545;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.933333;PAIREDR=0.878049;PAO=0;PQA=0;PQR=0;PRO=0;QA=1200;QR=1646;RO=41;RPL=0;RPP=68.1545;RPPR=92.0407;RPR=30;RUN=1;SAF=30;SAP=68.1545;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:17,2:17:683:2:82:-2.06011,0,-56.0781 0/1:17:10,7:10:395:7:280:-20.4517,0,-30.7902 0/1:27:14,13:14:568:13:518:-38.839,0,-43.3344 1/1:8:0,8:0:0:8:320:-29.1662,-2.40824,0 dDocent_Contig_17003 160 . A G 161.008 . AB=0.176471;ABP=18.4661;AC=1;AF=0.125;AN=8;AO=3;CIGAR=8M1X4M1X7M;DP=55;DPB=56.2381;DPRA=0.944444;EPP=9.52472;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=24;MQMR=45.6486;NS=4;NUMALT=4;ODDS=0;PAIRED=0;PAIREDR=0.486486;PAO=0;PQA=0;PQR=0;PRO=0;QA=72;QR=1367;RO=37;RPL=3;RPP=9.52472;RPPR=83.3548;RPR=0;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=83.3548;SRR=37;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:17:14,0,0,3,0:14:499:0,0,3,0:0,0,72,0:-0.762029,-4.97645,-24.0496,-4.97645,-24.0496,-24.0496,0,-19.2788,-19.2788,-18.3757,-4.97645,-24.0496,-24.0496,-19.2788,-24.0496 0|0:15:5,3,2,0,4:5:192:3,2,0,4:18,12,0,158:-10.5964,-12.1016,-27.0185,-12.0965,-27.9335,-27.3196,-12.1016,-27.9215,-27.9217,-27.9301,0,-15.9116,-15.9064,-15.9099,-14.7058 0|0:18:16,2,0,0,0:16:605:2,0,0,0:12,0,0,0:0,-4.73975,-54.1059,-4.81648,-54.708,-54.7109,-4.81648,-54.708,-54.7109,-54.7109,-4.81648,-54.708,-54.7109,-54.7109,-54.7109 0|0:5:2,0,0,0,3:2:71:0,0,0,3:0,0,0,121:-8.89601,-9.49807,-15.2764,-9.49807,-15.2764,-15.2764,-9.49807,-15.2764,-15.2764,-15.2764,0,-6.13984,-6.13984,-6.13984,-5.23675 dDocent_Contig_17004 21 . A G 65.9223 . AB=0.2;ABP=22.5536;AC=2;AF=0.25;AN=8;AO=7;CIGAR=1X;DP=59;DPB=59;DPRA=2.125;EPP=18.2106;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=0;PAIREDR=0.423077;PAO=0;PQA=0;PQR=0;PRO=0;QA=263;QR=1975;RO=52;RPL=0;RPP=18.2106;RPPR=115.927;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:8:8,0:8:296:0:0:0,-2.40824,-26.992 0/1:9:6,3:6:218:3:110:-7.55017,0,-17.2622 0/0:26:24,2:24:928:2:77:0,-0.517638,-76.5255 0/1:16:14,2:14:533:2:76:-2.39833,0,-43.4966 dDocent_Contig_17005 57 . T G 2043.36 . AB=0.720588;ABP=31.7504;AC=5;AF=0.625;AN=8;AO=65;CIGAR=1X;DP=84;DPB=84;DPRA=0;EPP=144.156;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2543;QR=763;RO=19;RPL=65;RPP=144.156;RPPR=44.2683;RPR=0;RUN=1;SAF=65;SAP=144.156;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:7,13:7:277:13:513:-40.4924,0,-19.2775 1/1:16:0,16:0:0:16:641:-58.0243,-4.81648,0 0/1:33:10,23:10:406:23:859:-67.6776,0,-26.966 0/1:15:2,13:2:80:13:530:-43.531,0,-3.07634 dDocent_Contig_17006 22 . G A 112.533 . AB=0.571429;ABP=3.32051;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=45;DPB=45;DPRA=0.607143;EPP=13.8677;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=193;QR=1580;RO=40;RPL=0;RPP=13.8677;RPPR=89.8692;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:10:9,1:9:354:1:30:0,-0.0107335,-29.2194 0/0:21:21,0:21:828:0:0:0,-6.32163,-74.8326 0/1:7:3,4:3:118:4:163:-12.9512,0,-8.89499 0/0:7:7,0:7:280:0:0:0,-2.10721,-25.5707 dDocent_Contig_17007 49 . C T 198.079 . AB=0.186441;ABP=53.3958;AC=3;AF=0.375;AN=8;AO=11;CIGAR=1X;DP=62;DPB=62;DPRA=6.55556;EPP=26.8965;EPPR=74.5837;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.727273;PAIREDR=0.901961;PAO=0;PQA=0;PQR=0;PRO=0;QA=445;QR=2016;RO=51;RPL=0;RPP=26.8965;RPPR=74.5837;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:23,2:23:916:2:82:-0.253928,0,-75.2212 0/1:19:13,6:13:514:6:241:-16.3467,0,-40.8842 0/1:15:12,3:12:467:3:122:-6.85704,0,-37.8616 0/0:3:3,0:3:119:0:0:0,-0.90309,-11.095 dDocent_Contig_17008 9 . G T 4108.68 . AB=0.0967742;ABP=90.5697;AC=0;AF=0;AN=8;AO=6;CIGAR=2M1X2M;DP=259;DPB=170.2;DPRA=0;EPP=16.0391;EPPR=189.757;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=2.77556e-17;PAIRED=1;PAIREDR=0.837209;PAO=0;PQA=0;PQR=0;PRO=0;QA=226;QR=3268;RO=86;RPL=0;RPP=16.0391;RPPR=189.757;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=86;SRP=189.757;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:100:36,58,0,3:36:1384:58,0,3:2143,0,115:-164.431,0,-96.1606,-175.269,-113.62,-288.894,-165.829,-104.182,-279.455,-278.552 0|0:62:21,29,6,6:21:779:29,6,6:1051,226,227:-79.4649,0,-55.0031,-67.2657,-45.2131,-129.199,-67.1764,-45.1238,-112.396,-129.11 0|0:64:17,42,0,4:17:643:42,0,4:1551,0,140:-121.74,0,-40.0819,-126.857,-52.7252,-179.57,-115.472,-41.3432,-168.184,-166.98 0|0:33:12,19,0,1:12:462:19,0,1:689,0,35:-52.6301,0,-32.223,-56.2424,-37.9425,-94.1841,-53.3954,-35.0974,-91.337,-91.036 dDocent_Contig_17010 81 . C T 55.5699 . AB=0.0588235;ABP=60.4905;AC=0;AF=0;AN=8;AO=2;CIGAR=1X1M1X;DP=61;DPB=61;DPRA=11.3333;EPP=7.35324;EPPR=111.584;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=69;QR=1697;RO=50;RPL=2;RPP=7.35324;RPPR=111.584;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:21:18,0,3:18:621:0,3:0,99:-2.91577,-8.33431,-58.7981,0,-50.7959,-49.8928 0|0:34:27,2,5:27:902:2,5:69,173:-5.93204,-8.45441,-80.8685,0,-67.4096,-71.5109 0|0:3:3,0,0:3:105:0,0:0,0:0,-0.90309,-9.79616,-0.90309,-9.79616,-9.79616 0|0:3:2,0,1:2:69:0,1:0,29:-1.99657,-2.59863,-8.24096,0,-5.9506,-5.64957 dDocent_Contig_17011 108 . A T 200.916 . AB=0.354839;ABP=8.68415;AC=3;AF=0.5;AN=6;AO=11;CIGAR=1X;DP=31;DPB=31;DPRA=0;EPP=26.8965;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=377;QR=672;RO=20;RPL=0;RPP=26.8965;RPPR=46.4397;RPR=11;RUN=1;SAF=0;SAP=26.8965;SAR=11;SRF=0;SRP=46.4397;SRR=20;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 0/1:17:11,6:11:379:6:206:-13.759,0,-29.3245 0/1:10:7,3:7:232:3:102:-6.5065,0,-18.194 0/1:4:2,2:2:61:2:69:-5.34854,0,-4.58911 dDocent_Contig_17012 29 . A T 124.883 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=29;CIGAR=1M7I4M1X1M;DP=29;DPB=58;DPRA=0;EPP=65.983;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=7;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=203;QR=0;RO=0;RPL=0;RPP=65.983;RPPR=0;RPR=29;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:13:0,13:0:0:13:91:-5.24644,-3.91339,0 1|1:9:0,9:0:0:9:63:-3.64583,-2.70927,0 1|1:4:0,4:0:0:4:28:-1.64507,-1.20412,0 1|1:3:0,3:0:0:3:21:-1.24492,-0.90309,0 dDocent_Contig_17013 34 . A G 42.5717 . AB=0.115385;ABP=69.8248;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=161;DPB=161;DPRA=1.43119;EPP=16.0391;EPPR=339.589;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.993548;PAO=0;PQA=0;PQR=0;PRO=0;QA=236;QR=6123;RO=155;RPL=0;RPP=16.0391;RPPR=339.589;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=155;SRP=339.589;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:30:30,0:30:1206:0:0:0,-9.0309,-108.811 0/0:50:50,0:50:2000:0:0:0,-15.0515,-180.192 0/1:52:46,6:46:1787:6:236:-5.95612,0,-145.392 0/0:29:29,0:29:1130:0:0:0,-8.72987,-101.978 dDocent_Contig_17014 131 . G A 61.8896 . AB=0.16129;ABP=33.9012;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=52;DPB=52;DPRA=4.42857;EPP=13.8677;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=184;QR=1722;RO=47;RPL=0;RPP=13.8677;RPPR=105.07;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=105.07;SRR=47;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:26,5:26:953:5:184:-7.58649,0,-76.7559 0/0:3:3,0:3:109:0:0:0,-0.90309,-10.168 0/0:16:16,0:16:586:0:0:0,-4.81648,-53.077 0/0:2:2,0:2:74:0:0:0,-0.60206,-7.02588 dDocent_Contig_17015 120 . C T 159.41 . AB=0.290323;ABP=14.8483;AC=2;AF=0.25;AN=8;AO=9;CIGAR=1X;DP=48;DPB=48;DPRA=1.82353;EPP=22.5536;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=311;QR=1290;RO=39;RPL=0;RPP=22.5536;RPPR=87.6977;RPR=9;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=87.6977;SRR=39;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:14,4:14:459:4:138:-7.34186,0,-36.2048 0/0:2:2,0:2:68:0:0:0,-0.60206,-6.45788 0/0:15:15,0:15:502:0:0:0,-4.51545,-45.4973 0/1:13:8,5:8:261:5:173:-11.9968,0,-19.895 dDocent_Contig_17016 19 . C T 168.354 . AB=0.388889;ABP=4.9405;AC=2;AF=0.25;AN=8;AO=10;CIGAR=1X2M1X;DP=68;DPB=68;DPRA=0;EPP=24.725;EPPR=128.956;GTI=0;LEN=1;MEANALT=1;MQM=56.4;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=396;QR=2240;RO=58;RPL=0;RPP=24.725;RPPR=128.956;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:30:28,2:28:1097:2:78:0,-1.63762,-91.6347 0|1:14:9,5:9:331:5:198:-13.9397,0,-25.9199 0|0:20:19,1:19:740:1:41:0,-1.94717,-62.8548 0|1:4:2,2:2:72:2:79:-6.29351,0,-5.63112 dDocent_Contig_17017 133 . G A 67.5983 . AB=0;ABP=0;AC=2;AF=0.25;AN=8;AO=2;CIGAR=1X;DP=17;DPB=17;DPRA=0.4;EPP=7.35324;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=68;QR=524;RO=15;RPL=0;RPP=7.35324;RPPR=35.5824;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=35.5824;SRR=15;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:6:6,0:6:210:0:0:0,-1.80618,-19.2425 0/0:8:8,0:8:279:0:0:0,-2.40824,-25.449 0/0:1:1,0:1:35:0:0:0,-0.30103,-3.49863 1/1:2:0,2:0:0:2:68:-6.45793,-0.60206,0 dDocent_Contig_17018 23 . G T 70.5658 . AB=0.3;ABP=6.48466;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=54;DPB=54;DPRA=0.681818;EPP=9.52472;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.960784;PAO=0;PQA=0;PQR=0;PRO=0;QA=123;QR=2009;RO=51;RPL=0;RPP=9.52472;RPPR=113.755;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:7,3:7:284:3:123:-8.45449,0,-22.9235 0/0:27:27,0:27:1066:0:0:0,-8.12781,-96.2347 0/0:12:12,0:12:458:0:0:0,-3.61236,-41.5643 0/0:5:5,0:5:201:0:0:0,-1.50515,-18.4709 dDocent_Contig_17019 18 . T C 1465.61 . AB=0.734375;ABP=33.5466;AC=2;AF=0.333333;AN=6;AO=47;CIGAR=1X1M1X;DP=71;DPB=71;DPRA=4.57143;EPP=105.07;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1875;QR=915;RO=24;RPL=0;RPP=105.07;RPPR=55.1256;RPR=47;RUN=1;SAF=47;SAP=105.07;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. 0|1:54:14,40:14:542:40:1604:-128.341,0,-32.8643 0|0:7:7,0:7:257:0:0:0,-2.10721,-23.4773 0|1:10:3,7:3:116:7:271:-21.7426,0,-7.8071 dDocent_Contig_17020 82 . A G 122.978 . AB=0.714286;ABP=5.80219;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=39;DPB=39;DPRA=0.65625;EPP=13.8677;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=175;QR=1143;RO=34;RPL=5;RPP=13.8677;RPPR=76.8404;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:18:18,0:18:630:0:0:0,-5.41854,-57.0277 0/1:7:2,5:2:54:5:175:-13.9865,0,-3.02171 0/0:9:9,0:9:284:0:0:0,-2.70927,-25.8663 0/0:5:5,0:5:175:0:0:0,-1.50515,-16.0937 dDocent_Contig_17021 77 . C A 172.821 . AB=0.36;ABP=7.26639;AC=2;AF=0.25;AN=8;AO=9;CIGAR=1X;DP=64;DPB=64;DPRA=0.641026;EPP=22.5536;EPPR=120.27;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=306;QR=1820;RO=54;RPL=9;RPP=22.5536;RPPR=120.27;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:11,3:11:376:3:99:-5.02304,0,-29.955 0/0:13:13,0:13:453:0:0:0,-3.91339,-41.1028 0/0:26:25,0:25:833:0:0:0,-7.52575,-74.9379 0/1:11:5,6:5:158:6:207:-15.6569,0,-11.2196 dDocent_Contig_17023 16 . G T 577.447 . AB=0.303797;ABP=29.4253;AC=4;AF=0.5;AN=8;AO=24;CIGAR=1M1I1X;DP=79;DPB=91;DPRA=0;EPP=55.1256;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=59.7917;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=968;QR=2193;RO=55;RPL=0;RPP=55.1256;RPPR=122.441;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:20:18,2:18:704:2:82:-1.75908,0,-57.6586 0|1:25:16,9:16:649:9:359:-25.1384,0,-51.2171 0|1:27:18,9:18:718:9:365:-25.0862,0,-56.8182 0|1:7:3,4:3:122:4:162:-12.8597,0,-9.26528 dDocent_Contig_17025 86 . T G 146.253 . AB=0.275862;ABP=15.6647;AC=2;AF=0.25;AN=8;AO=8;CIGAR=1X;DP=65;DPB=65;DPRA=0.805556;EPP=20.3821;EPPR=126.784;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=271;QR=1822;RO=57;RPL=8;RPP=20.3821;RPPR=126.784;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:16:16,0:16:488:0:0:0,-4.81648,-44.2143 0/1:8:2,6:2:51:6:204:-16.2852,0,-2.4362 0/1:21:19,2:19:631:2:67:-0.0414151,0,-50.7839 0/0:20:20,0:20:652:0:0:0,-6.0206,-58.9899 dDocent_Contig_17026 9 . G A 311.132 . AB=0.285714;ABP=22.5536;AC=2;AF=0.25;AN=8;AO=14;CIGAR=1X;DP=63;DPB=63;DPRA=3.5;EPP=33.4109;EPPR=107.241;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.979167;PAO=0;PQA=0;PQR=0;PRO=0;QA=540;QR=1826;RO=48;RPL=0;RPP=33.4109;RPPR=107.241;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:18,6:18:694:6:234:-14.2064,0,-55.5693 0/1:25:16,8:16:594:8:306:-20.3047,0,-46.1952 0/0:4:4,0:4:154:0:0:0,-1.20412,-14.2335 0/0:10:10,0:10:384:0:0:0,-3.0103,-34.9151 dDocent_Contig_17027 51 . C T 195.036 . AB=0.538462;ABP=3.17734;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=52;DPB=52;DPRA=1;EPP=18.2106;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.2;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.977778;PAO=0;PQA=0;PQR=0;PRO=0;QA=275;QR=1812;RO=45;RPL=7;RPP=18.2106;RPPR=92.2337;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=44;SRP=92.2337;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:15:15,0:15:590:0:0:0,-4.51545,-53.0024 0/0:10:10,0:10:407:0:0:0,-3.0103,-36.9906 0/0:14:14,0:14:570:0:0:0,-4.21442,-51.6422 0/1:13:6,7:6:245:7:275:-21.2025,0,-18.5161 dDocent_Contig_17028 9 . G C 256.663 . AB=0.47619;ABP=3.1137;AC=2;AF=0.25;AN=8;AO=10;CIGAR=1X;DP=26;DPB=26;DPRA=4.2;EPP=24.725;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=59.4;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=0.9;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=385;QR=609;RO=16;RPL=0;RPP=24.725;RPPR=37.7539;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:5,6:5:190:6:231:-17.8407,0,-14.156 0/0:3:3,0:3:117:0:0:0,-0.90309,-10.9104 0/1:10:6,4:6:231:4:154:-11.2232,0,-18.1477 0/0:2:2,0:2:71:0:0:0,-0.60206,-6.74158 dDocent_Contig_17029 12 . G A 50.9485 . AB=0.125;ABP=51.8684;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=94;DPB=94;DPRA=2.48148;EPP=16.0391;EPPR=194.1;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.833333;PAIREDR=0.886364;PAO=0;PQA=0;PQR=0;PRO=0;QA=246;QR=3493;RO=88;RPL=0;RPP=16.0391;RPPR=194.1;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=88;SRP=194.1;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:18:18,0:18:712:0:0:0,-5.41854,-64.4034 0/1:40:35,5:35:1387:5:205:-6.79381,0,-113.05 0/0:27:26,1:26:1042:1:41:0,-4.03324,-89.9786 0/0:9:9,0:9:352:0:0:0,-2.70927,-32.0393 dDocent_Contig_17033 49 . C A 302.564 . AB=0.521739;ABP=3.10471;AC=2;AF=0.25;AN=8;AO=12;CIGAR=1X;DP=47;DPB=47;DPRA=0.958333;EPP=29.068;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=443;QR=1335;RO=35;RPL=0;RPP=29.068;RPPR=79.0118;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:14:14,0:14:531:0:0:0,-4.21442,-48.1208 0/0:10:10,0:10:363:0:0:0,-3.0103,-33.0012 0/1:13:5,8:5:200:8:296:-23.0766,0,-14.4662 0/1:10:6,4:6:241:4:147:-10.5778,0,-19.0558 dDocent_Contig_17034 196 . G A 55.9905 . AB=0.230769;ABP=11.1951;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=80;DPB=80;DPRA=0.58209;EPP=9.52472;EPPR=170.214;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=117;QR=2943;RO=77;RPL=3;RPP=9.52472;RPPR=170.214;RPR=0;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=170.214;SRR=77;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:10,3:10:378:3:117:-6.99699,0,-30.4579 0/0:40:40,0:40:1542:0:0:0,-12.0412,-139.046 0/0:14:14,0:14:516:0:0:0,-4.21442,-46.7718 0/0:13:13,0:13:507:0:0:0,-3.91339,-45.9795 dDocent_Contig_17035 136 . A G 81.1534 . AB=0.222222;ABP=9.04217;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X3M1X;DP=35;DPB=35;DPRA=0.75;EPP=7.35324;EPPR=57.2971;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=62;QR=865;RO=25;RPL=0;RPP=7.35324;RPPR=57.2971;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=57.2971;SRR=25;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:7:5,2,0,0:5:173:2,0,0:75,0,0:-4.84813,0,-13.803,-6.35328,-14.4051,-20.398,-6.35328,-14.4051,-20.398,-20.398 0|0:9:5,0,2,2:5:170:0,2,2:0,62,72:-4.39464,-5.89979,-19.6913,-0.948231,-14.7227,-14.1207,0,-13.8102,-8.8422,-13.2081 0|0:12:10,1,0,1:10:347:1,0,1:35,0,35:0,-0.162564,-28.0668,-3.0103,-28.3678,-31.2158,-0.162564,-25.5198,-28.3678,-28.0668 0|0:7:5,0,0,2:5:175:0,0,2:0,0,67:-4.25583,-5.76098,-20.0103,-5.76098,-20.0103,-20.0103,0,-14.5885,-14.5885,-13.9864 dDocent_Contig_17036 31 . A G 356.16 . AB=0.172131;ABP=116.924;AC=3;AF=0.375;AN=8;AO=21;CIGAR=1X;DP=129;DPB=129;DPRA=5.80952;EPP=48.6112;EPPR=237.529;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=844;QR=4210;RO=108;RPL=0;RPP=48.6112;RPPR=237.529;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=108;SRP=237.529;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:70:64,6:64:2507:6:245:-1.35737,0,-204.718 0/1:32:28,4:28:1093:4:157:-4.87547,0,-89.0286 0/1:20:9,11:9:351:11:442:-34.1143,0,-25.9283 0/0:7:7,0:7:259:0:0:0,-2.10721,-23.6592 dDocent_Contig_17038 35 . A T 1294.23 . AB=0.37594;ABP=20.7903;AC=4;AF=0.5;AN=8;AO=50;CIGAR=2X;DP=133;DPB=133;DPRA=0;EPP=111.584;EPPR=183.243;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.94;PAIREDR=0.987952;PAO=0;PQA=0;PQR=0;PRO=0;QA=1950;QR=3231;RO=83;RPL=0;RPP=111.584;RPPR=183.243;RPR=50;RUN=1;SAF=50;SAP=111.584;SAR=0;SRF=83;SRP=183.243;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:71:58,13:58:2259:13:506:-24.5114,0,-182.123 0|1:35:14,21:14:536:21:831:-64.5702,0,-38.0431 0|1:18:4,14:4:159:14:541:-43.6113,0,-9.27379 0|1:9:7,2:7:277:2:72:-4.1271,0,-22.59 dDocent_Contig_17039 52 . C T 32.4772 . AB=0.115385;ABP=69.8248;AC=3;AF=0.375;AN=8;AO=6;CIGAR=1X;DP=58;DPB=58;DPRA=2.88889;EPP=16.0391;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.833333;PAIREDR=0.865385;PAO=0;PQA=0;PQR=0;PRO=0;QA=236;QR=2046;RO=52;RPL=6;RPP=16.0391;RPPR=115.927;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:16,2:16:628:2:76:-1.79572,0,-51.4379 0/1:25:23,2:23:905:2:80:-0.0660406,0,-74.2278 0/1:9:7,2:7:272:2:80:-4.8823,0,-22.1358 0/0:6:6,0:6:241:0:0:0,-1.80618,-22.0669 dDocent_Contig_17041 13 . G A 138.343 . AB=0.269231;ABP=15.0369;AC=2;AF=0.25;AN=8;AO=8;CIGAR=1X;DP=65;DPB=65;DPRA=2.375;EPP=20.3821;EPPR=126.784;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=309;QR=2141;RO=57;RPL=0;RPP=20.3821;RPPR=126.784;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:7,5:7:273:5:193:-14.1288,0,-21.3253 0/0:8:8,0:8:304:0:0:0,-2.40824,-27.7188 0/0:31:30,1:30:1116:1:39:0,-5.43537,-96.8387 0/1:14:12,2:12:448:2:77:-3.09472,0,-36.4502 dDocent_Contig_17043 11 . G A 295.547 . AB=0.0645161;ABP=54.0749;AC=0;AF=0;AN=8;AO=2;CIGAR=1X1M1X10M;DP=60;DPB=59;DPRA=0;EPP=7.35324;EPPR=74.6689;GTI=0;LEN=1;MEANALT=4;MQM=40;MQMR=60;NS=4;NUMALT=6;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=80;QR=1275;RO=33;RPL=0;RPP=7.35324;RPPR=74.6689;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:31:15,2,0,8,0,5,0:15:585:2,0,8,0,5,0:80,0,292,0,161,0:-19.3639,-17.819,-65.3304,-23.8793,-65.9325,-71.989,0,-42.0771,-48.1338,-45.7256,-23.8793,-65.9325,-71.989,-48.1338,-71.989,-12.0069,-54.0544,-60.1099,-36.2604,-60.1099,-58.6048,-23.8793,-65.9325,-71.989,-48.1338,-71.989,-60.1099,-71.989 0|0:11:6,0,0,3,2,0,0:6:224:0,0,3,2,0,0:0,0,113,12,0,0:-7.65814,-9.46432,-27.8715,-9.46432,-27.8715,-27.8715,0,-18.5876,-18.5876,-17.6845,-9.55959,-27.892,-27.892,-18.6309,-27.2899,-9.46432,-27.8715,-27.8715,-18.5876,-27.892,-27.8715,-9.46432,-27.8715,-27.8715,-18.5876,-27.892,-27.8715,-27.8715 0|0:7:5,0,0,0,0,0,2:5:191:0,0,0,0,0,2:0,0,0,0,0,81:-5.57852,-7.08367,-22.7379,-7.08367,-22.7379,-22.7379,-7.08367,-22.7379,-22.7379,-22.7379,-7.08367,-22.7379,-22.7379,-22.7379,-22.7379,-7.08367,-22.7379,-22.7379,-22.7379,-22.7379,-22.7379,0,-16.0522,-16.0522,-16.0522,-16.0522,-16.0522,-15.4502 0|0:11:7,0,2,0,0,2,0:7:275:0,2,0,0,2,0:0,78,0,0,66,0:-4.34942,-6.45663,-29.1061,0,-22.6911,-22.089,-6.45663,-29.1061,-22.6911,-29.1061,-6.45663,-29.1061,-22.6911,-29.1061,-29.1061,-1.70522,-24.3265,-17.9154,-24.3265,-24.3265,-23.7245,-6.45663,-29.1061,-22.6911,-29.1061,-29.1061,-24.3265,-29.1061 dDocent_Contig_17044 35 . T C 55.5924 . AB=0;ABP=0;AC=0;AF=0;AN=8;AO=2;CIGAR=1X2M1X2M2X;DP=72;DPB=72;DPRA=0.9375;EPP=7.35324;EPPR=144.156;GTI=0;LEN=1;MEANALT=2;MQM=10;MQMR=60;NS=4;NUMALT=2;ODDS=3.46945e-18;PAIRED=0;PAIREDR=0.984615;PAO=0;PQA=0;PQR=0;PRO=0;QA=80;QR=2577;RO=65;RPL=0;RPP=7.35324;RPPR=144.156;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=65;SRP=144.156;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:24:24,0,0:24:963:0,0:0,0:0,-7.22472,-86.9741,-7.22472,-86.9741,-86.9741 0|0:25:21,0,4:21:824:0,4:0,160:-7.25805,-13.5797,-81.3333,0,-68.152,-66.9478 0|0:8:8,0,0:8:317:0,0:0,0:0,-2.40824,-28.8959,-2.40824,-28.8959,-28.8959 0|0:15:12,2,1:12:473:2,1:80,33:0,-2.56842,-40.9406,-0.867518,-38.8794,-39.7337 dDocent_Contig_17045 129 . A T 52.9812 . AB=0.241379;ABP=19.8579;AC=2;AF=0.25;AN=8;AO=14;CIGAR=1X;DP=60;DPB=60;DPRA=4.66667;EPP=33.4109;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=16.7143;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=471;QR=1612;RO=46;RPL=0;RPP=33.4109;RPPR=102.898;RPR=14;RUN=1;SAF=0;SAP=33.4109;SAR=14;SRF=0;SRP=102.898;SRR=46;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:27:20,7:20:689:7:243:0,-3.10469,-57.3034 0/1:15:13,2:13:461:2:71:-0.163906,0,-37.3109 0/1:14:9,5:9:321:5:157:-6.99544,0,-25.0191 0/0:4:4,0:4:141:0:0:0,-1.20412,-13.037 dDocent_Contig_17047 33 . G A 266.858 . AB=0.208955;ABP=52.306;AC=3;AF=0.375;AN=8;AO=14;CIGAR=1X;DP=92;DPB=92;DPRA=0.893333;EPP=33.4109;EPPR=170.214;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.974026;PAO=0;PQA=0;PQR=0;PRO=0;QA=545;QR=3026;RO=77;RPL=0;RPP=33.4109;RPPR=170.214;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=77;SRP=170.214;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:25:25,0:25:988:0:0:0,-7.52575,-89.2199 0/1:21:15,6:15:597:6:235:-15.1984,0,-47.7453 0/1:22:15,6:15:592:6:233:-14.884,0,-47.1873 0/1:24:22,2:22:849:2:77:-0.0834803,0,-69.4975 dDocent_Contig_17049 24 . A G 1749.44 . AB=0.584158;ABP=9.22372;AC=4;AF=0.5;AN=8;AO=59;CIGAR=1X;DP=101;DPB=101;DPRA=0;EPP=131.127;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=59.7966;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.627119;PAIREDR=0.833333;PAO=0;PQA=0;PQR=0;PRO=0;QA=2349;QR=1671;RO=42;RPL=0;RPP=131.127;RPPR=94.2121;RPR=59;RUN=1;SAF=59;SAP=131.127;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:37:11,26:11:449:26:1025:-81.3904,0,-29.6278 0/1:28:8,20:8:316:20:808:-64.6079,0,-20.375 0/1:21:13,8:13:499:8:318:-22.6616,0,-38.9215 0/1:15:10,5:10:407:5:198:-13.6816,0,-32.4746 dDocent_Contig_17050 37 . T A 40.5046 . AB=0.25;ABP=9.52472;AC=2;AF=0.333333;AN=6;AO=3;CIGAR=1M1D1X;DP=19;DPB=18;DPRA=0.857143;EPP=9.52472;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=114;QR=618;RO=16;RPL=0;RPP=9.52472;RPPR=37.7539;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:7:7,0:7:271:0:0:0,-2.10721,-24.756 0|1:4:2,2:2:76:2:74:-5.82165,0,-6.01014 0|1:8:7,1:7:271:1:40:-1.58744,0,-22.347 .:.:.:.:.:.:.:. dDocent_Contig_17051 30 . A G 37.9084 . AB=0.16;ABP=28.1125;AC=2;AF=0.25;AN=8;AO=5;CIGAR=3X;DP=70;DPB=70;DPRA=0.5;EPP=13.8677;EPPR=144.156;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=194;QR=2559;RO=65;RPL=0;RPP=13.8677;RPPR=144.156;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=65;SRP=144.156;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:8:6,2:6:228:2:79:-5.08939,0,-18.4735 0|0:28:28,0:28:1113:0:0:0,-8.42884,-100.461 0|1:17:15,2:15:596:2:75:-2.00283,0,-48.8615 0|0:17:16,1:16:622:1:40:0,-1.12183,-52.318 dDocent_Contig_17052 9 . G A 34.9309 . AB=0.15;ABP=24.2907;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=57;DPB=57;DPRA=1.62162;EPP=9.52472;EPPR=120.27;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=0.962963;PAO=0;PQA=0;PQR=0;PRO=0;QA=117;QR=2074;RO=54;RPL=0;RPP=9.52472;RPPR=120.27;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:17,3:17:650:3:117:-4.88978,0,-52.8159 0/0:35:35,0:35:1346:0:0:0,-10.536,-121.423 0/0:1:1,0:1:39:0:0:0,-0.30103,-3.89656 0/0:1:1,0:1:39:0:0:0,-0.30103,-3.89656 dDocent_Contig_17053 17 . A T 691.567 . AB=0.176471;ABP=18.4661;AC=0;AF=0;AN=8;AO=3;CIGAR=2X3M2D1M1X1M2X1M2X1M;DP=64;DPB=58.375;DPRA=0;EPP=9.52472;EPPR=65.983;GTI=0;LEN=1;MEANALT=3;MQM=21;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=63;QR=1134;RO=29;RPL=0;RPP=9.52472;RPPR=65.983;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:27:11,15,0:11:433:15,0:580,0:-40.7586,0,-31.374,-44.07,-35.8895,-79.7115 0|0:17:6,7,3:6:228:7,3:268,63:-18.6293,0,-16.7107,-16.5187,-14.9105,-34.3333 0|0:16:9,6,0:9:356:6,0:230,0:-14.7302,0,-27.5343,-17.4394,-29.3405,-46.7607 0|0:4:3,1,0:3:117:1,0:39,0:-2.39488,0,-9.70579,-3.29797,-10.0068,-12.9375 dDocent_Contig_17054 40 . T C 42.5121 . AB=0.2;ABP=18.6449;AC=3;AF=0.375;AN=8;AO=4;CIGAR=1X;DP=25;DPB=25;DPRA=1.33333;EPP=11.6962;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=156;QR=842;RO=21;RPL=0;RPP=11.6962;RPPR=48.6112;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:7,2:7:277:2:75:-4.41083,0,-22.587 0/0:5:5,0:5:201:0:0:0,-1.50515,-18.47 0/1:3:2,1:2:81:1:41:-3.19148,0,-6.78264 0/1:8:7,1:7:283:1:40:-1.58744,0,-23.4348 dDocent_Contig_17055 12 . C A 153.586 . AB=0.205882;ABP=28.557;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X2M2X1M;DP=53;DPB=53;DPRA=1.78947;EPP=18.2106;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1.5;MQM=53.1429;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.714286;PAIREDR=0.511628;PAO=0;PQA=0;PQR=0;PRO=0;QA=266;QR=1668;RO=43;RPL=0;RPP=18.2106;RPPR=96.3836;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:12:12,0,0:12:469:0,0:0,0:0,-3.61236,-42.5615,-3.61236,-42.5615,-42.5615 0|0:7:7,0,0:7:275:0,0:0,0:0,-2.10721,-25.1191,-2.10721,-25.1191,-25.1191 0|0:24:19,2,3:19:728:2,3:72,117:-3.93345,-4.34073,-63.4797,0,-54.4636,-58.8917 0|1:10:5,5,0:5:196:5,0:194,0:-14.8218,0,-15.0051,-16.327,-16.5102,-32.4476 dDocent_Contig_17057 53 . A G 67.0979 . AB=0.375;ABP=4.09604;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=37;DPB=37;DPRA=0.827586;EPP=9.52472;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.705882;PAO=0;PQA=0;PQR=0;PRO=0;QA=116;QR=1295;RO=34;RPL=3;RPP=9.52472;RPPR=76.8404;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:11,0:11:432:0:0:0,-3.31133,-39.2308 0/0:8:8,0:8:314:0:0:0,-2.40824,-28.6237 0/0:10:10,0:10:357:0:0:0,-3.0103,-32.4644 0/1:8:5,3:5:192:3:116:-8.40875,0,-15.24 dDocent_Contig_17058 9 . G A 278.373 . AB=0.5;ABP=3.0103;AC=3;AF=0.375;AN=8;AO=17;CIGAR=1X3M1X;DP=64;DPB=64;DPRA=0;EPP=39.9253;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=39.4118;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.529412;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=677;QR=1854;RO=47;RPL=0;RPP=39.9253;RPPR=105.07;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:36:33,3:33:1295:3:118:0,-3.34757,-109.339 0|1:12:9,3:9:360:3:122:-2.61484,0,-29.1522 0|1:9:1,8:1:40:8:317:-23.7846,0,-1.28641 0|1:7:4,3:4:159:3:120:-6.07728,0,-12.5851 dDocent_Contig_17059 14 . G T 81.2627 . AB=0.145833;ABP=55.3066;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X;DP=137;DPB=137;DPRA=1.36207;EPP=22.5536;EPPR=278.787;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.444444;PAIREDR=0.393701;PAO=0;PQA=0;PQR=0;PRO=0;QA=344;QR=4893;RO=127;RPL=0;RPP=22.5536;RPPR=278.787;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=127;SRP=278.787;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:48:40,7:40:1527:7:263:-9.52418,0,-123.187 0/0:32:32,0:32:1268:0:0:0,-9.63296,-114.388 0/0:26:26,0:26:1004:0:0:0,-7.82678,-90.6522 0/0:31:29,2:29:1094:2:81:0,-1.6462,-91.0604 dDocent_Contig_17060 17 . A G 82.2314 . AB=0.142857;ABP=18.5208;AC=3;AF=0.375;AN=8;AO=4;CIGAR=1X;DP=39;DPB=39;DPRA=0.695652;EPP=11.6962;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=145;QR=1391;RO=35;RPL=0;RPP=11.6962;RPPR=79.0118;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:12,2:12:467:2:67:-2.14627,0,-38.1648 0/0:22:22,0:22:884:0:0:0,-6.62266,-79.869 1/1:2:0,2:0:0:2:78:-7.40278,-0.60206,0 0/0:1:1,0:1:40:0:0:0,-0.30103,-3.99568 dDocent_Contig_17061 23 . T C 378.749 . AB=0.0869565;ABP=37.093;AC=0;AF=0;AN=8;AO=2;CIGAR=1M2X8M1D1M;DP=64;DPB=65.3077;DPRA=0;EPP=7.35324;EPPR=89.8692;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=0.775;PAO=0;PQA=0;PQR=0;PRO=0;QA=76;QR=1579;RO=40;RPL=0;RPP=7.35324;RPPR=89.8692;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:23:15,6,2,0:15:591:6,2,0:217,76,0:-13.1822,0,-46.8285,-11.4601,-42.4034,-59.5034,-17.6976,-48.6346,-60.1055,-66.338 0|0:17:10,5,0,2:10:397:5,0,2:182,0,53:-11.9209,0,-31.2878,-14.9312,-32.793,-47.6504,-10.7934,-28.6489,-43.4986,-42.8965 0|0:19:12,7,0,0:12:471:7,0,0:256,0,0:-17.6684,0,-37.0199,-21.2808,-39.1271,-60.0326,-21.2808,-39.1271,-60.0326,-60.0326 0|0:5:3,1,0,1:3:120:1,0,1:38,0,40:-2.40191,-0.19841,-9.78262,-3.305,-10.0837,-13.1962,0,-6.78857,-9.90012,-9.59909 dDocent_Contig_17062 7 . A C 216.989 . AB=0.409091;ABP=4.58955;AC=2;AF=0.25;AN=8;AO=9;CIGAR=1X;DP=34;DPB=34;DPRA=1.83333;EPP=22.5536;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=58.1111;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.444444;PAIREDR=0.88;PAO=0;PQA=0;PQR=0;PRO=0;QA=345;QR=970;RO=25;RPL=0;RPP=22.5536;RPPR=57.2971;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:2:2,0:2:76:0:0:0,-0.60206,-7.21467 0/1:15:11,4:11:428:4:152:-9.46312,0,-34.3599 0/1:7:2,5:2:77:5:193:-15.6333,0,-5.20193 0/0:10:10,0:10:389:0:0:0,-3.0103,-35.3684 dDocent_Contig_17063 9 . G T 142.222 . AB=0.153846;ABP=84.19;AC=3;AF=0.375;AN=8;AO=15;CIGAR=1X;DP=136;DPB=136;DPRA=0;EPP=35.5824;EPPR=265.758;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=582;QR=4634;RO=121;RPL=0;RPP=35.5824;RPPR=265.758;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=121;SRP=265.758;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:58:55,3:55:2114:3:117:0,-6.54936,-179.578 0/1:53:48,5:48:1829:5:195:-1.96961,0,-148.908 0/1:12:10,2:10:387:2:78:-3.79111,0,-31.5752 0/1:13:8,5:8:304:5:192:-13.7366,0,-23.8047 dDocent_Contig_17064 50 . C G 196.688 . AB=0.444444;ABP=3.49285;AC=2;AF=0.25;AN=8;AO=8;CIGAR=1X;DP=30;DPB=30;DPRA=1.5;EPP=20.3821;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=308;QR=864;RO=22;RPL=8;RPP=20.3821;RPPR=50.7827;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:4:3,1:3:120:1:37:-2.49371,0,-9.98378 0/0:8:8,0:8:318:0:0:0,-2.40824,-28.9867 0/0:4:4,0:4:143:0:0:0,-1.20412,-13.2159 0/1:14:7,7:7:283:7:271:-20.5394,0,-21.6292 dDocent_Contig_17066 12 . T A 1292.32 . AB=0.446602;ABP=5.56125;AC=4;AF=0.5;AN=8;AO=46;CIGAR=1X;DP=103;DPB=103;DPRA=0;EPP=102.898;EPPR=126.784;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.913043;PAIREDR=0.964912;PAO=0;PQA=0;PQR=0;PRO=0;QA=1847;QR=2272;RO=57;RPL=0;RPP=102.898;RPPR=126.784;RPR=46;RUN=1;SAF=46;SAP=102.898;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:35:12,23:12:488:23:925:-73.0178,0,-33.7354 0/1:35:22,13:22:882:13:524:-36.9703,0,-69.1521 0/1:19:13,6:13:512:6:239:-16.1643,0,-40.7059 0/1:14:10,4:10:390:4:159:-10.4775,0,-31.2367 dDocent_Contig_17067 98 . N T 906.509 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=30;CIGAR=1X;DP=30;DPB=30;DPRA=0;EPP=68.1545;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=991;QR=0;RO=0;RPL=30;RPP=68.1545;RPPR=0;RPR=0;RUN=1;SAF=30;SAP=68.1545;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:16:0,16:0:0:16:527:-47.7412,-4.81648,0 1/1:13:0,13:0:0:13:428:-38.8336,-3.91339,0 1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0 dDocent_Contig_17068 8 . A T 254.536 . AB=0.202899;ABP=55.9124;AC=2;AF=0.25;AN=8;AO=16;CIGAR=1X;DP=147;DPB=147;DPRA=1.24731;EPP=37.7539;EPPR=287.473;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.78626;PAO=0;PQA=0;PQR=0;PRO=0;QA=621;QR=5021;RO=131;RPL=0;RPP=37.7539;RPPR=287.473;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=131;SRP=287.473;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:31:31,0:31:1188:0:0:0,-9.33193,-107.215 0/1:42:31,11:31:1175:11:426:-26.0514,0,-93.403 0/0:47:45,2:45:1728:2:78:0,-6.74494,-148.374 0/1:27:24,3:24:930:3:117:-2.78257,0,-75.8883 dDocent_Contig_17069 187 . C T 449.757 . AB=0.515152;ABP=3.0761;AC=3;AF=0.375;AN=8;AO=17;CIGAR=1X;DP=79;DPB=79;DPRA=0.23913;EPP=39.9253;EPPR=137.642;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=658;QR=2441;RO=62;RPL=17;RPP=39.9253;RPPR=137.642;RPR=0;RUN=1;SAF=0;SAP=39.9253;SAR=17;SRF=0;SRP=137.642;SRR=62;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:46:46,0:46:1829:0:0:0,-13.8474,-164.82 0/1:9:5,4:5:197:4:164:-12.4406,0,-15.3948 0/1:7:4,3:4:143:3:106:-7.77912,0,-11.1076 0/1:17:7,10:7:272:10:388:-30.1539,0,-19.7243 dDocent_Contig_17070 92 . T C 71.1444 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X1M1X3M10X1M6I4M;DP=2;DPB=2.57143;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=56;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=75;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:2:0,2:0:0:2:75:-7.11335,-0.60206,0 .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. dDocent_Contig_17071 14 . A G 170.296 . AB=0;ABP=0;AC=0;AF=0;AN=8;AO=4;CIGAR=2X1M1X3M1X2M1X2M1X3M1X1M1X3M1X;DP=184;DPB=183.375;DPRA=1.92857;EPP=11.6962;EPPR=42.0968;GTI=0;LEN=1;MEANALT=13;MQM=7;MQMR=7;NS=4;NUMALT=9;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=159;QR=699;RO=18;RPL=0;RPP=11.6962;RPPR=42.0968;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:72:5,6,0,5,8,4,0,26,7,1:5:199:6,0,5,8,4,0,26,7,1:42,0,35,56,159,0,182,49,7:-7.25096,-8.1616,-8.00119,-8.75611,-9.80737,-10.4017,-8.26068,-9.31211,-9.90643,-8.40128,-7.96344,-9.01498,-9.60926,-9.11402,-7.20102,-7.43942,-8.49078,-9.08526,-8.58986,-8.29264,-7.88114,-8.75611,-9.80737,-10.4017,-9.90643,-9.60926,-9.08526,-10.4017,-6.18039,-7.23296,-7.82678,-7.33191,-7.03509,-6.50972,-7.82678,0,-8.06252,-9.11402,-9.70831,-9.21306,-8.91594,-8.39171,-9.70831,-7.13402,-7.6011,-8.65702,-9.70831,-10.3027,-9.80737,-9.51021,-8.98618,-10.3027,-7.72779,-9.60926,-10.0016 0|0:66:8,0,1,2,0,0,0,25,6,7:8:308:0,1,2,0,0,0,25,6,7:0,7,14,0,0,0,175,42,49:-4.95378,-7.36202,-9.99269,-7.2632,-9.89384,-9.59281,-7.16439,-9.79501,-9.69619,-9.19295,-7.36202,-9.99269,-9.89384,-9.79501,-9.99269,-7.36202,-9.99269,-9.89384,-9.79501,-9.99269,-9.99269,-7.36202,-9.99269,-9.89384,-9.79501,-9.99269,-9.99269,-9.99269,-4.89702,-7.52575,-7.42736,-7.32901,-7.52575,-7.52575,-7.52575,0,-6.76928,-9.39978,-9.30099,-9.20222,-9.39978,-9.39978,-9.39978,-6.93605,-7.5936,-6.67053,-9.30099,-9.20222,-9.10347,-9.30099,-9.30099,-9.30099,-6.83794,-8.70857,-7.19378 0|0:30:3,0,0,1,0,0,6,5,1,0:3:112:0,0,1,0,0,6,5,1,0:0,0,7,0,0,75,35,7,0:-3.44956,-4.35265,-5.33985,-4.35265,-5.33985,-5.33985,-4.25403,-5.24122,-5.24122,-4.94019,-4.35265,-5.33985,-5.33985,-5.24122,-5.33985,-4.35265,-5.33985,-5.33985,-5.24122,-5.33985,-5.33985,-0.817199,-1.80618,-1.80618,-1.70724,-1.80618,-1.80618,0,-3.86,-4.84709,-4.84709,-4.74868,-4.84709,-4.84709,-1.31169,-3.34194,-4.25403,-5.24122,-5.24122,-5.14262,-5.24122,-5.24122,-1.70724,-4.74868,-4.94019,-4.35265,-5.33985,-5.33985,-5.24122,-5.33985,-5.33985,-1.80618,-4.84709,-5.24122,-5.33985 0|0:16:2,0,5,1,0,0,0,2,0,1:2:80:0,5,1,0,0,0,2,0,1:0,35,7,0,0,0,14,0,7:-0.736433,-1.33849,-1.99931,-0.842883,-1.50515,0,-1.23937,-1.9004,-1.40649,-1.59937,-1.33849,-1.99931,-1.50515,-1.9004,-1.99931,-1.33849,-1.99931,-1.50515,-1.9004,-1.99931,-1.99931,-1.33849,-1.99931,-1.50515,-1.9004,-1.99931,-1.99931,-1.99931,-1.14025,-1.80152,-1.30794,-1.70268,-1.80152,-1.80152,-1.80152,-1.19946,-1.33849,-1.99931,-1.50515,-1.9004,-1.99931,-1.99931,-1.99931,-1.80152,-1.99931,-1.23937,-1.9004,-1.40649,-1.80152,-1.9004,-1.9004,-1.9004,-1.70268,-1.9004,-1.59937 dDocent_Contig_17072 42 . T A 2032.92 . AB=0.464516;ABP=4.70545;AC=4;AF=0.5;AN=8;AO=72;CIGAR=1X;DP=155;DPB=155;DPRA=0;EPP=159.356;EPPR=183.243;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2845;QR=3335;RO=83;RPL=0;RPP=159.356;RPPR=183.243;RPR=72;RUN=1;SAF=72;SAP=159.356;SAR=0;SRF=83;SRP=183.243;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:53:34,19:34:1354:19:753:-52.1387,0,-106.165 0/1:48:23,25:23:929:25:999:-75.7576,0,-69.4619 0/1:30:19,11:19:768:11:434:-30.3809,0,-60.4087 0/1:24:7,17:7:284:17:659:-52.4126,0,-18.7087 dDocent_Contig_17073 17 . T A 606.033 . AB=0.469388;ABP=3.40914;AC=4;AF=0.5;AN=8;AO=23;CIGAR=1X;DP=49;DPB=49;DPRA=0;EPP=52.9542;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.565217;PAIREDR=0.653846;PAO=0;PQA=0;PQR=0;PRO=0;QA=903;QR=1044;RO=26;RPL=0;RPP=52.9542;RPPR=59.4686;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:2,8:2:82:8:317:-25.8853,0,-4.76938 0/1:13:7,6:7:283:6:239:-17.969,0,-21.9291 0/1:14:12,2:12:480:2:76:-2.99912,0,-39.336 0/1:12:5,7:5:199:7:271:-21.1368,0,-14.6762 dDocent_Contig_17074 59 . T A 132.176 . AB=0.222222;ABP=27.1378;AC=2;AF=0.25;AN=8;AO=8;CIGAR=2X;DP=70;DPB=70;DPRA=1.05882;EPP=20.3821;EPPR=137.642;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.75;PAIREDR=0.854839;PAO=0;PQA=0;PQR=0;PRO=0;QA=297;QR=2308;RO=62;RPL=5;RPP=4.09604;RPPR=4.27115;RPR=3;RUN=1;SAF=5;SAP=4.09604;SAR=3;SRF=34;SRP=4.27115;SRR=28;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:29:25,4:25:938:4:153:-5.41033,0,-75.9996 0|0:22:22,0:22:792:0:0:0,-6.62266,-71.5923 0|0:12:12,0:12:455:0:0:0,-3.61236,-41.2933 0|1:7:3,4:3:123:4:144:-11.2051,0,-9.35758 dDocent_Contig_17075 183 . G A 1079.21 . AB=0.6;ABP=6.05036;AC=6;AF=0.75;AN=8;AO=35;CIGAR=1X;DP=49;DPB=49;DPRA=0;EPP=79.0118;EPPR=33.4109;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.714286;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1338;QR=553;RO=14;RPL=35;RPP=79.0118;RPPR=33.4109;RPR=0;RUN=1;SAF=0;SAP=79.0118;SAR=35;SRF=0;SRP=33.4109;SRR=14;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:7,7:7:283:7:269:-20.3571,0,-21.6286 1/1:5:0,5:0:0:5:197:-18.1064,-1.50515,0 0/1:21:7,14:7:270:14:521:-40.9046,0,-18.3366 1/1:9:0,9:0:0:9:351:-31.9507,-2.70927,0 dDocent_Contig_17079 178 . G A 160.828 . AB=0.1;ABP=16.9077;AC=5;AF=0.625;AN=8;AO=5;CIGAR=1X;DP=20;DPB=20;DPRA=0.777778;EPP=13.8677;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=204;QR=609;RO=15;RPL=5;RPP=13.8677;RPPR=35.5824;RPR=0;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=35.5824;SRR=15;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:122:-11.3725,-0.90309,0 0/1:10:9,1:9:367:1:41:-1.08427,0,-30.3847 0/0:6:6,0:6:242:0:0:0,-1.80618,-22.1573 1/1:1:0,1:0:0:1:41:-4.09457,-0.30103,0 dDocent_Contig_17080 12 . G A 197.813 . AB=0.210526;ABP=16.8392;AC=4;AF=0.5;AN=8;AO=4;CIGAR=1X4M;DP=50;DPB=50;DPRA=0;EPP=11.6962;EPPR=81.1833;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.75;PAIREDR=0.916667;PAO=0;PQA=0;PQR=0;PRO=0;QA=163;QR=1442;RO=36;RPL=0;RPP=11.6962;RPPR=81.1833;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:19:12,3,4:12:484:3,4:117,163:-9.84488,-3.8477,-42.8379,0,-30.2927,-38.7029 0|1:7:6,1,0:6:243:1,0:40,0:-1.88847,0,-20.1408,-3.69465,-20.4418,-23.7362 0|1:16:14,2,0:14:554:2,0:80,0:-2.77531,0,-45.3881,-6.98973,-45.9901,-52.5808 0|1:8:4,4,0:4:161:4,0:161,0:-12.4672,0,-12.4672,-13.6714,-13.6714,-26.9407 dDocent_Contig_17082 14 . A G 87.5233 . AB=0.266667;ABP=10.1038;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=70;DPB=70;DPRA=0.818182;EPP=11.6962;EPPR=146.327;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.75;PAIREDR=0.757576;PAO=0;PQA=0;PQR=0;PRO=0;QA=162;QR=2643;RO=66;RPL=0;RPP=11.6962;RPPR=146.327;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=66;SRP=146.327;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:26:26,0:26:1036:0:0:0,-7.82678,-93.5287 0/0:21:21,0:21:845:0:0:0,-6.32163,-76.3611 0/1:15:11,4:11:445:4:162:-10.4513,0,-35.8903 0/0:8:8,0:8:317:0:0:0,-2.40824,-28.8955 dDocent_Contig_17083 23 . C A 237.491 . AB=0.375;ABP=6.26751;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X1M1X;DP=58;DPB=58;DPRA=2.11765;EPP=22.5536;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=359;QR=1954;RO=49;RPL=0;RPP=22.5536;RPPR=109.412;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:11:11,0:11:435:0:0:0,-3.31133,-39.5039 0|0:17:17,0:17:686:0:0:0,-5.11751,-62.07 0|1:24:15,9:15:604:9:359:-25.448,0,-47.4738 0|0:6:6,0:6:229:0:0:0,-1.80618,-20.9738 dDocent_Contig_17084 32 . C G 447.569 . AB=0.247059;ABP=50.2462;AC=2;AF=0.333333;AN=6;AO=21;CIGAR=1X;DP=103;DPB=103;DPRA=2.36111;EPP=48.6112;EPPR=181.071;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=0.707317;PAO=0;PQA=0;PQR=0;PRO=0;QA=813;QR=3241;RO=82;RPL=0;RPP=48.6112;RPPR=181.071;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=82;SRP=181.071;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:51:44,7:44:1738:7:266:-8.945,0,-141.287 0/1:34:20,14:20:778:14:547:-39.3347,0,-60.0947 0/0:18:18,0:18:725:0:0:0,-5.41854,-65.576 ./.:.:.:.:.:.:.:. dDocent_Contig_17085 21 . G A 2281.97 . AB=0.193548;ABP=78.8717;AC=1;AF=0.125;AN=8;AO=18;CIGAR=1X2M1X;DP=123;DPB=123;DPRA=0;EPP=42.0968;EPPR=65.983;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=1.38778e-17;PAIRED=0.833333;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=723;QR=1135;RO=29;RPL=0;RPP=42.0968;RPPR=65.983;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:20:7,3,9:7:275:3,9:114,363:-27.8442,-20.605,-42.3212,0,-13.2911,-19.9309 0|0:30:3,0,27:3:120:0,27:0,1058:-86.4814,-87.3845,-97.2704,0,-10.2846,-2.15679 0|0:39:13,8,18:13:503:8,18:325,718:-55.2068,-32.3123,-71.2161,0,-14.4921,-35.8865 1|0:34:6,7,21:6:237:7,21:284,781:-65.9931,-44.3693,-61.7693,-3.93017,0,-17.1057 dDocent_Contig_17086 49 . A G 33.1636 . AB=0.133333;ABP=38.0434;AC=2;AF=0.25;AN=8;AO=4;CIGAR=1X;DP=59;DPB=59;DPRA=1.03448;EPP=11.6962;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.981818;PAO=0;PQA=0;PQR=0;PRO=0;QA=161;QR=2154;RO=55;RPL=0;RPP=11.6962;RPPR=122.441;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:8,2:8:311:2:81:-4.67543,0,-25.3405 0/1:20:18,2:18:710:2:80:-1.57098,0,-58.2044 0/0:15:15,0:15:593:0:0:0,-4.51545,-53.709 0/0:14:14,0:14:540:0:0:0,-4.21442,-48.9342 dDocent_Contig_17087 28 . G A 1067.68 . AB=0.558824;ABP=5.05404;AC=4;AF=0.5;AN=8;AO=38;CIGAR=1X;DP=68;DPB=68;DPRA=0;EPP=85.5263;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.552632;PAIREDR=0.8;PAO=0;PQA=0;PQR=0;PRO=0;QA=1480;QR=1170;RO=30;RPL=0;RPP=85.5263;RPPR=68.1545;RPR=38;RUN=1;SAF=38;SAP=85.5263;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:11,15:11:434:15:582:-44.8894,0,-31.5885 0/1:19:4,15:4:152:15:583:-47.0868,0,-8.32757 0/1:16:10,6:10:380:6:235:-16.7049,0,-29.7245 0/1:7:5,2:5:204:2:80:-5.48436,0,-16.6368 dDocent_Contig_17088 98 . N C 662.843 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=21;CIGAR=1X;DP=21;DPB=21;DPRA=0;EPP=48.6112;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=720;QR=0;RO=0;RPL=21;RPP=48.6112;RPPR=0;RPR=0;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:7:0,7:0:0:7:234:-21.3867,-2.10721,0 1/1:2:0,2:0:0:2:70:-6.6474,-0.60206,0 1/1:12:0,12:0:0:12:416:-37.7727,-3.61236,0 ./.:.:.:.:.:.:.:. dDocent_Contig_17089 132 . A G 33.3205 . AB=0.333333;ABP=4.45795;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X;DP=33;DPB=33;DPRA=0.666667;EPP=7.35324;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.967742;PAO=0;PQA=0;PQR=0;PRO=0;QA=72;QR=1127;RO=31;RPL=0;RPP=7.35324;RPPR=70.3259;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=70.3259;SRR=31;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:17:17,0:17:620:0:0:0,-5.11751,-56.1339 0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672 0/1:6:4,2:4:148:2:72:-5.03054,0,-11.8758 0/0:8:8,0:8:287:0:0:0,-2.40824,-26.176 dDocent_Contig_17090 38 . T C 5098.19 . AB=0.471795;ABP=4.35773;AC=8;AF=1;AN=8;AO=92;CIGAR=1X1M;DP=195;DPB=195;DPRA=0;EPP=202.786;EPPR=39.9253;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3652;QR=688;RO=17;RPL=0;RPP=202.786;RPPR=39.9253;RPR=92;RUN=1;SAF=92;SAP=202.786;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:51:0,21,30:0:0:21,30:817,1193:-165.755,-98.6173,-92.2956,-67.5295,0,-58.4986 1|1:39:7,9,23:7:285:9,23:359,927:-80.3486,-52.8919,-73.6941,-6.04635,0,-22.6368 1|1:64:5,41,18:5:201:41,18:1617,711:-173.456,-41.9283,-46.152,-116.462,0,-127.608 1|1:41:5,15,21:5:202:15,21:588,821:-97.657,-50.8117,-62.9522,-31.6846,0,-42.0194 dDocent_Contig_17091 38 . C A 872.737 . AB=0.0909091;ABP=66.97;AC=0;AF=0;AN=8;AO=4;CIGAR=1X2M2X;DP=112;DPB=112;DPRA=0;EPP=11.6962;EPPR=117.971;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=162;QR=2691;RO=68;RPL=0;RPP=11.6962;RPPR=150.67;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=64;SRP=117.971;SRR=4;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:31:14,3,13:14:546:3,13:122,518:-34.3443,-28.4876,-72.478,0,-34.813,-40.9661 0|0:17:7,0,9:7:279:0,9:0,362:-25.6258,-27.733,-50.7168,0,-22.9663,-20.257 0|0:51:37,0,14:37:1474:0,14:0,543:-31.938,-43.0761,-164.476,0,-121.779,-117.565 0|0:13:10,1,2:10:392:1,2:40,71:-2.74408,-2.44437,-34.4102,0,-28.9332,-31.6269 dDocent_Contig_17092 15 . G T 289.513 . AB=0.393939;ABP=6.23461;AC=1;AF=0.125;AN=8;AO=13;CIGAR=1X;DP=111;DPB=111;DPRA=1.26923;EPP=31.2394;EPPR=215.815;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=0.816327;PAO=0;PQA=0;PQR=0;PRO=0;QA=444;QR=3896;RO=98;RPL=0;RPP=31.2394;RPPR=215.815;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=98;SRP=215.815;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:33:20,13:20:786:13:444:-30.3493,0,-61.1221 0/0:39:39,0:39:1551:0:0:0,-11.7402,-139.833 0/0:10:10,0:10:393:0:0:0,-3.0103,-35.7204 0/0:29:29,0:29:1166:0:0:0,-8.72987,-105.219 dDocent_Contig_17093 24 . G A 1288.23 . AB=0.0615385;ABP=111.551;AC=0;AF=0;AN=8;AO=4;CIGAR=1X3M1X;DP=108;DPB=108;DPRA=0;EPP=11.6962;EPPR=120.27;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=155;QR=2009;RO=54;RPL=0;RPP=11.6962;RPPR=120.27;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:36:16,1,19:16:583:1,19:40,733:-55.3655,-56.8862,-104.197,0,-44.2907,-41.8683 0|0:34:20,0,14:20:744:0,14:0,483:-33.5516,-39.5722,-100.484,0,-61.2675,-57.0531 0|0:29:13,3,13:13:492:3,13:115,487:-35.9639,-30.4369,-69.8696,0,-30.8902,-36.4165 0|0:9:5,0,4:5:190:0,4:0,152:-11.3403,-12.8454,-28.427,0,-15.9613,-14.7572 dDocent_Contig_17094 19 . G A 950.582 . AB=0.455696;ABP=4.35716;AC=4;AF=0.5;AN=8;AO=36;CIGAR=1X;DP=79;DPB=79;DPRA=0;EPP=37.7539;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1387;QR=1698;RO=43;RPL=0;RPP=81.1833;RPPR=96.3836;RPR=36;RUN=1;SAF=30;SAP=37.7539;SAR=6;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:23,8:23:926:8:290:-17.1092,0,-74.312 0/1:21:11,10:11:413:10:401:-30.1288,0,-31.1791 0/1:16:5,11:5:205:11:434:-34.5956,0,-14.0185 0/1:11:4,7:4:154:7:262:-20.6225,0,-10.9205 dDocent_Contig_17095 35 . C G 36.3235 . AB=0.4;ABP=3.44459;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X;DP=41;DPB=41;DPRA=0.416667;EPP=3.0103;EPPR=37.8095;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.564103;PAO=0;PQA=0;PQR=0;PRO=0;QA=72;QR=1518;RO=39;RPL=0;RPP=7.35324;RPPR=87.6977;RPR=2;RUN=1;SAF=1;SAP=3.0103;SAR=1;SRF=32;SRP=37.8095;SRR=7;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:11,0:11:428:0:0:0,-3.31133,-38.8692 0/0:10:10,0:10:396:0:0:0,-3.0103,-35.997 0/1:5:3,2:3:119:2:72:-5.33122,0,-9.58935 0/0:15:15,0:15:575:0:0:0,-4.51545,-52.0856 dDocent_Contig_17097 98 . N G 146.799 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=6;CIGAR=1X;DP=6;DPB=6;DPRA=0;EPP=16.0391;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=149;QR=0;RO=0;RPL=6;RPP=16.0391;RPPR=0;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1:0,1:0:0:1:25:-2.49986,-0.30103,0 1/1:4:0,4:0:0:4:93:-8.60132,-1.20412,0 ./.:.:.:.:.:.:.:. 1/1:1:0,1:0:0:1:31:-3.09945,-0.30103,0 dDocent_Contig_17098 122 . A G 62.9165 . AB=0.5;ABP=3.0103;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=52;DPB=52;DPRA=0.391304;EPP=9.52472;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=58.9388;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.979592;PAO=0;PQA=0;PQR=0;PRO=0;QA=105;QR=1612;RO=49;RPL=0;RPP=9.52472;RPPR=109.412;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=109.412;SRR=49;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:26:26,0:26:866:0:0:0,-7.82678,-78.246 0/0:19:19,0:19:636:0:0:0,-5.71957,-55.1104 0/1:6:3,3:3:76:3:105:-7.98998,0,-5.28486 0/0:1:1,0:1:34:0:0:0,-0.30103,-3.39891 dDocent_Contig_17099 9 . G C 466.34 . AB=0.266667;ABP=24.2907;AC=4;AF=0.5;AN=8;AO=12;CIGAR=1X4M;DP=59;DPB=59;DPRA=0;EPP=29.068;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=6.93889e-18;PAIRED=1;PAIREDR=0.828571;PAO=0;PQA=0;PQR=0;PRO=0;QA=454;QR=1346;RO=35;RPL=0;RPP=29.068;RPPR=79.0118;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:8:3,1,4:3:118:1,4:40,152:-11.5464,-9.15043,-18.5619,0,-6.40515,-8.49776 0|1:14:8,6,0:8:306:6,0:236,0:-17.3975,0,-23.6818,-19.8058,-25.488,-44.9055 0|1:26:21,0,5:21:805:0,5:0,189:-9.54778,-15.8694,-81.9424,0,-66.4517,-64.9465 0|1:11:3,5,3:3:117:5,3:199,113:-15.4964,0,-8.11895,-7.1479,-0.371237,-15.8593 dDocent_Contig_17100 28 . T A 119.494 . AB=0.147541;ABP=68.8308;AC=2;AF=0.25;AN=8;AO=10;CIGAR=1X;DP=99;DPB=99;DPRA=0.986667;EPP=24.725;EPPR=196.271;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=0.3;PAIREDR=0.88764;PAO=0;PQA=0;PQR=0;PRO=0;QA=400;QR=3330;RO=89;RPL=0;RPP=24.725;RPPR=196.271;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=89;SRP=196.271;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:40:34,6:34:1239:6:245:-10.3883,0,-99.7498 0/1:21:18,3:18:679:3:121:-4.95857,0,-55.1135 0/0:25:25,0:25:948:0:0:0,-7.52575,-85.6301 0/0:13:12,1:12:464:1:34:0,-0.514479,-38.7116 dDocent_Contig_17101 183 . G A 211.641 . AB=0.290323;ABP=14.8483;AC=2;AF=0.25;AN=8;AO=9;CIGAR=1X;DP=61;DPB=61;DPRA=1.03333;EPP=22.5536;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.961538;PAO=0;PQA=0;PQR=0;PRO=0;QA=368;QR=2112;RO=52;RPL=9;RPP=22.5536;RPPR=115.927;RPR=0;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=115.927;SRR=52;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:10:10,0:10:404:0:0:0,-3.0103,-36.7189 0/0:20:20,0:20:811:0:0:0,-6.0206,-73.3051 0/1:13:9,4:9:367:4:164:-11.2365,0,-29.4819 0/1:18:13,5:13:530:5:204:-13.3255,0,-42.6281 dDocent_Contig_17102 61 . C A 51.7875 . AB=0.272727;ABP=7.94546;AC=2;AF=0.25;AN=8;AO=3;CIGAR=1X;DP=37;DPB=37;DPRA=0.423077;EPP=9.52472;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=123;QR=1347;RO=34;RPL=3;RPP=9.52472;RPPR=76.8404;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:4:3,1:3:121:1:41:-2.89045,0,-10.0759 0/0:15:15,0:15:592:0:0:0,-4.51545,-53.6144 0/0:11:11,0:11:434:0:0:0,-3.31133,-39.4127 0/1:7:5,2:5:200:2:82:-5.67247,0,-16.2721 dDocent_Contig_17104 166 . C A 32.7837 . AB=0.222222;ABP=9.04217;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X;DP=25;DPB=25;DPRA=1.6875;EPP=7.35324;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=748;RO=23;RPL=2;RPP=7.35324;RPPR=52.9542;RPR=0;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=52.9542;SRR=23;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:1:1,0:1:32:0:0:0,-0.30103,-3.19931 0/0:10:10,0:10:324:0:0:0,-3.0103,-29.4768 0/1:9:7,2:7:226:2:81:-4.97646,0,-17.948 0/0:5:5,0:5:166:0:0:0,-1.50515,-15.2677 dDocent_Contig_17105 8 . A G 684.881 . AB=0.192708;ABP=160.487;AC=3;AF=0.375;AN=8;AO=39;CIGAR=2M2X6M;DP=251;DPB=252.5;DPRA=0;EPP=32.4644;EPPR=180.65;GTI=0;LEN=1;MEANALT=3.25;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0.167539;PAO=0;PQA=0;PQR=0;PRO=0;QA=1488;QR=7435;RO=191;RPL=0;RPP=87.6977;RPPR=417.762;RPR=39;RUN=1;SAF=31;SAP=32.4644;SAR=8;SRF=158;SRP=180.65;SRR=33;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:89:74,0,13:74:2864:0,13:0,488:-17.6872,-39.9634,-275.224,0,-235.249,-231.336 0|0:59:51,0,2:51:2005:0,2:0,74:0,-15.3525,-180.287,-9.30274,-174.233,-173.631 0|1:53:39,0,9:39:1508:0,9:0,344:-16.5082,-28.2484,-152.121,0,-123.896,-121.187 0|1:50:27,8,15:27:1058:8,15:307,582:-39.6906,-22.62,-107.217,0,-61.8106,-82.4932 dDocent_Contig_17108 16 . C A 261.374 . AB=0.416667;ABP=4.45795;AC=2;AF=0.25;AN=8;AO=10;CIGAR=1X;DP=52;DPB=52;DPRA=0.857143;EPP=24.725;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=400;QR=1651;RO=42;RPL=0;RPP=24.725;RPPR=94.2121;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:6:2,4:2:79:4:162:-13.1606,0,-5.69106 0/0:21:21,0:21:832:0:0:0,-6.32163,-75.1907 0/1:18:12,6:12:468:6:238:-16.3747,0,-37.0441 0/0:7:7,0:7:272:0:0:0,-2.10721,-24.8415 dDocent_Contig_17109 22 . T C 599.937 . AB=0.396552;ABP=8.40154;AC=4;AF=0.5;AN=8;AO=23;CIGAR=1X;DP=58;DPB=58;DPRA=0;EPP=52.9542;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.347826;PAIREDR=0.771429;PAO=0;PQA=0;PQR=0;PRO=0;QA=926;QR=1405;RO=35;RPL=0;RPP=52.9542;RPPR=79.0118;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:4,8:4:152:8:323:-25.8266,0,-10.4332 0/1:15:7,8:7:285:8:318:-24.4668,0,-21.509 0/1:11:7,4:7:279:4:164:-11.8386,0,-22.1693 0/1:20:17,3:17:689:3:121:-5.2596,0,-56.3183 dDocent_Contig_17110 10 . T G 254.191 . AB=0.3125;ABP=12.7819;AC=1;AF=0.125;AN=8;AO=10;CIGAR=1X;DP=72;DPB=72;DPRA=2.4;EPP=24.725;EPPR=137.642;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.983871;PAO=0;PQA=0;PQR=0;PRO=0;QA=401;QR=2493;RO=62;RPL=0;RPP=24.725;RPPR=137.642;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:32:22,10:22:874:10:401:-26.8169,0,-69.3325 0/0:30:30,0:30:1213:0:0:0,-9.0309,-109.443 0/0:6:6,0:6:245:0:0:0,-1.80618,-22.4295 0/0:4:4,0:4:161:0:0:0,-1.20412,-14.8749 dDocent_Contig_17112 39 . G A 289.795 . AB=0.237288;ABP=38.3795;AC=3;AF=0.375;AN=8;AO=14;CIGAR=1X;DP=61;DPB=61;DPRA=9.83333;EPP=33.4109;EPPR=102.898;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=59.413;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.978261;PAO=0;PQA=0;PQR=0;PRO=0;QA=567;QR=1839;RO=46;RPL=0;RPP=33.4109;RPPR=102.898;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:33:29,4:29:1158:4:160:-4.84944,0,-94.5633 0/1:21:11,9:11:439:9:366:-26.9111,0,-33.4719 0/1:5:4,1:4:162:1:41:-2.58942,0,-13.4616 0/0:2:2,0:2:80:0:0:0,-0.60206,-6.85587 dDocent_Contig_17113 93 . G A 37.8148 . AB=0.235294;ABP=13.3567;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=40;DPB=40;DPRA=2.21739;EPP=11.6962;EPPR=79.0118;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=115;QR=1187;RO=35;RPL=4;RPP=11.6962;RPPR=79.0118;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:11,0:11:380:0:0:0,-3.31133,-34.533 0/1:17:12,4:12:414:4:115:-5.4801,0,-32.4253 0/0:10:10,0:10:340:0:0:0,-3.0103,-30.9288 0/0:2:2,0:2:53:0:0:0,-0.60206,-5.03367 dDocent_Contig_17114 53 . G A 1201.33 . 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AB=0.347826;ABP=12.2627;AC=4;AF=0.5;AN=8;AO=16;CIGAR=1X;DP=46;DPB=46;DPRA=0;EPP=37.7539;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.25;PAIREDR=0.8;PAO=0;PQA=0;PQR=0;PRO=0;QA=640;QR=1209;RO=30;RPL=0;RPP=37.7539;RPPR=68.1545;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:6,7:6:237:7:281:-21.7486,0,-17.7897 0/1:14:11,3:11:445:3:122:-7.15807,0,-36.1913 0/1:14:9,5:9:365:5:196:-13.7999,0,-29.0006 0/1:5:4,1:4:162:1:41:-2.58942,0,-13.4618 dDocent_Contig_17117 24 . C T 104.227 . 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AB=0.227273;ABP=17.2236;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=66;DPB=66;DPRA=2.14286;EPP=18.2106;EPPR=122.589;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.966102;PAO=0;PQA=0;PQR=0;PRO=0;QA=263;QR=2375;RO=59;RPL=0;RPP=18.2106;RPPR=114.344;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=58;SRP=122.589;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:17,5:17:688:5:194:-11.2068,0,-55.6267 0/0:23:21,2:21:844:2:69:0,-0.372365,-69.722 0/0:7:7,0:7:282:0:0:0,-2.10721,-25.7526 0/0:14:14,0:14:561:0:0:0,-4.21442,-50.8324 dDocent_Contig_17119 8 . A C 52.1809 . AB=0.16;ABP=28.1125;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=63;DPB=63;DPRA=1.97368;EPP=11.6962;EPPR=131.127;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.983051;PAO=0;PQA=0;PQR=0;PRO=0;QA=153;QR=2268;RO=59;RPL=0;RPP=11.6962;RPPR=131.127;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=59;SRP=131.127;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:21,4:21:807:4:153:-6.61586,0,-65.43 0/0:30:30,0:30:1150:0:0:0,-9.0309,-103.798 0/0:5:5,0:5:194:0:0:0,-1.50515,-17.8328 0/0:3:3,0:3:117:0:0:0,-0.90309,-10.9104 dDocent_Contig_17120 41 . T C 381.5 . AB=0.4375;ABP=4.09604;AC=1;AF=0.125;AN=8;AO=14;CIGAR=1X2M1X;DP=78;DPB=78;DPRA=2.08696;EPP=33.4109;EPPR=87.8334;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.703125;PAO=0;PQA=0;PQR=0;PRO=0;QA=546;QR=2538;RO=64;RPL=0;RPP=33.4109;RPPR=87.8334;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=64;SRP=141.985;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:29:29,0:29:1151:0:0:0,-8.72987,-103.878 0|1:32:18,14:18:720:14:546:-39.8487,0,-55.4925 0|0:15:15,0:15:587:0:0:0,-4.51545,-53.1662 0|0:2:2,0:2:80:0:0:0,-0.60206,-7.59179 dDocent_Contig_17121 14 . A C 850.888 . AB=0.266667;ABP=66.8516;AC=4;AF=0.5;AN=8;AO=36;CIGAR=1X;DP=135;DPB=135;DPRA=0;EPP=81.1833;EPPR=209.388;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.1313;NS=4;NUMALT=1;ODDS=0;PAIRED=0.805556;PAIREDR=0.979798;PAO=0;PQA=0;PQR=0;PRO=0;QA=1463;QR=3986;RO=99;RPL=0;RPP=81.1833;RPPR=217.986;RPR=36;RUN=1;SAF=36;SAP=81.1833;SAR=0;SRF=98;SRP=209.388;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:18,5:18:714:5:205:-11.9113,0,-55.9387 0/1:27:12,15:12:485:15:611:-47.1991,0,-35.8736 0/1:78:64,14:64:2584:14:567:-27.8919,0,-209.205 0/1:7:5,2:5:203:2:80:-5.48436,0,-14.4319 dDocent_Contig_17123 98 . N A 184.196 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=6;CIGAR=1X;DP=6;DPB=6;DPRA=0;EPP=16.0391;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=8.76405;PAIRED=0.833333;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=201;QR=0;RO=0;RPL=6;RPP=16.0391;RPPR=0;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:6:0,6:0:0:6:201:-18.4195,-1.80618,0 ./.:.:.:.:.:.:.:. dDocent_Contig_17124 109 . T C 34.7517 . AB=0.136364;ABP=53.5464;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=70;DPB=70;DPRA=7.75;EPP=18.2106;EPPR=139.813;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.904762;PAO=0;PQA=0;PQR=0;PRO=0;QA=219;QR=2094;RO=63;RPL=0;RPP=18.2106;RPPR=139.813;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=139.813;SRR=63;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:18:17,1:17:579:1:18:0,-3.61857,-50.6331 0/1:44:38,6:38:1247:6:201:-5.17386,0,-99.2749 0/0:4:4,0:4:132:0:0:0,-1.20412,-12.206 0/0:4:4,0:4:136:0:0:0,-1.20412,-12.5759 dDocent_Contig_17125 65 . G T 79.5999 . AB=0.5;ABP=3.0103;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=35;DPB=35;DPRA=1.5;EPP=11.6962;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=0.903226;PAO=0;PQA=0;PQR=0;PRO=0;QA=163;QR=1222;RO=31;RPL=4;RPP=11.6962;RPPR=70.3259;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:6:6,0:6:245:0:0:0,-1.80618,-22.4295 0/0:8:8,0:8:309:0:0:0,-2.40824,-28.1687 0/0:15:14,1:14:545:1:40:0,-0.519771,-45.3952 0/1:6:3,3:3:123:3:123:-9.65861,0,-9.65861 dDocent_Contig_17126 11 . T C 527.879 . AB=0.277108;ABP=38.8265;AC=3;AF=0.375;AN=8;AO=23;CIGAR=1X;DP=86;DPB=86;DPRA=9.22222;EPP=52.9542;EPPR=139.813;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=912;QR=2543;RO=63;RPL=0;RPP=52.9542;RPPR=139.813;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=63;SRP=139.813;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:43:30,13:30:1209:13:514:-33.6597,0,-96.1396 0/1:21:14,7:14:566:7:283:-19.5214,0,-44.96 0/1:19:16,3:16:648:3:115:-5.00453,0,-52.9331 0/0:3:3,0:3:120:0:0:0,-0.90309,-11.1873 dDocent_Contig_17127 50 . A C 964.973 . 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A C 411.136 . AB=0.282051;ABP=19.1015;AC=4;AF=0.666667;AN=6;AO=12;CIGAR=1X4M;DP=40;DPB=40;DPRA=0;EPP=29.068;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.833333;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=458;QR=830;RO=23;RPL=0;RPP=29.068;RPPR=52.9542;RPR=12;RUN=1;SAF=0;SAP=29.068;SAR=12;SRF=0;SRP=52.9542;SRR=23;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:15:9,5,1:9:327:5,1:194,37:-13.2457,0,-25.194,-12.9309,-23.6715,-39.3192 0|1:24:14,0,10:14:503:0,10:0,384:-27.6915,-31.9059,-72.9245,0,-41.392,-38.3817 .:.:.:.:.:.:.:. 1|1:1:0,0,1:0:0:0,1:0,37:-3.69783,-3.69783,-3.69783,-0.30103,-0.30103,0 dDocent_Contig_17130 18 . A T 645.895 . AB=0.547619;ABP=3.83753;AC=3;AF=0.375;AN=8;AO=23;CIGAR=1X;DP=55;DPB=55;DPRA=1.07692;EPP=52.9542;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=0;PAIREDR=0.625;PAO=0;PQA=0;PQR=0;PRO=0;QA=906;QR=1274;RO=32;RPL=0;RPP=52.9542;RPPR=72.4974;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:13:13,0:13:523:0:0:0,-3.91339,-47.4171 0/1:20:7,13:7:268:13:515:-40.6702,0,-18.4578 0/1:12:5,7:5:199:7:271:-21.1402,0,-14.6756 0/1:10:7,3:7:284:3:120:-8.17701,0,-22.9235 dDocent_Contig_17131 8 . A C 1460.47 . AB=0.076087;ABP=146.611;AC=0;AF=0;AN=8;AO=7;CIGAR=1X3M1X;DP=118;DPB=118;DPRA=0;EPP=18.2106;EPPR=131.127;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.966102;PAO=0;PQA=0;PQR=0;PRO=0;QA=277;QR=2230;RO=59;RPL=0;RPP=18.2106;RPPR=131.127;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=59;SRP=131.127;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:24:15,2,7:15:565:2,7:79,282:-18.7336,-16.7498,-62.4254,0,-39.7762,-44.1721 0|0:39:19,2,18:19:716:2,18:78,716:-53.237,-52.5456,-110.605,0,-52.2477,-53.2422 0|0:26:20,0,6:20:759:0,6:0,244:-14.512,-20.5326,-82.7489,0,-62.6162,-60.81 0|0:29:5,3,21:5:190:3,21:120,832:-66.9621,-58.5816,-73.2573,0,-5.67678,-9.24784 dDocent_Contig_17132 15 . T C 134.363 . AB=0.3;ABP=9.95901;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=38;DPB=38;DPRA=3.33333;EPP=16.0391;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.0938;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=231;QR=1174;RO=32;RPL=0;RPP=16.0391;RPPR=72.4974;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:3:3,0:3:115:0:0:0,-0.90309,-10.7247 0/1:20:14,6:14:504:6:231:-15.1351,0,-39.6657 0/0:5:5,0:5:194:0:0:0,-1.50515,-17.8327 0/0:10:10,0:10:361:0:0:0,-3.0103,-32.7903 dDocent_Contig_17133 62 . G C 1209.48 . AB=0.569444;ABP=6.02623;AC=4;AF=0.5;AN=8;AO=41;CIGAR=1X;DP=72;DPB=72;DPRA=0;EPP=92.0407;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.365854;PAIREDR=0.645161;PAO=0;PQA=0;PQR=0;PRO=0;QA=1651;QR=1249;RO=31;RPL=41;RPP=92.0407;RPPR=70.3259;RPR=0;RUN=1;SAF=41;SAP=92.0407;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:11,13:11:439:13:519:-39.8305,0,-32.6399 0/1:17:11,6:11:445:6:244:-17.2213,0,-35.2886 0/1:24:7,17:7:283:17:688:-55.0221,0,-18.6189 0/1:7:2,5:2:82:5:200:-16.2718,0,-5.67247 dDocent_Contig_17134 107 . N T 121.793 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=37.75;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=133;QR=0;RO=0;RPL=0;RPP=11.6962;RPPR=0;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1:0,1:0:0:1:35:-3.49863,-0.30103,0 1/1:2:0,2:0:0:2:68:-5.55499,-0.60206,0 ./.:.:.:.:.:.:.:. 1/1:1:0,1:0:0:1:30:-2.64634,-0.30103,0 dDocent_Contig_17136 61 . T C 1169.84 . AB=0.413043;ABP=6.03148;AC=5;AF=0.625;AN=8;AO=40;CIGAR=1X;DP=67;DPB=67;DPRA=0;EPP=89.8692;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1486;QR=947;RO=27;RPL=40;RPP=89.8692;RPPR=61.6401;RPR=0;RUN=1;SAF=40;SAP=89.8692;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:11,8:11:374:8:296:-21.2674,0,-28.2643 1/1:21:0,21:0:0:21:810:-73.2153,-6.32163,0 0/1:17:7,10:7:257:10:341:-25.8906,0,-18.3648 0/1:10:9,1:9:316:1:39:-0.886264,0,-25.7648 dDocent_Contig_17138 95 . C T 79.2449 . AB=0.3125;ABP=7.89611;AC=2;AF=0.25;AN=8;AO=5;CIGAR=1X;DP=39;DPB=39;DPRA=0.695652;EPP=13.8677;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.882353;PAO=0;PQA=0;PQR=0;PRO=0;QA=164;QR=1146;RO=34;RPL=5;RPP=13.8677;RPPR=76.8404;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:20:20,0:20:671:0:0:0,-6.0206,-60.7048 0/1:8:7,1:7:243:1:34:-0.990671,0,-19.8006 0/1:8:4,4:4:140:4:130:-9.61283,0,-10.5367 0/0:3:3,0:3:92:0:0:0,-0.90309,-8.58429 dDocent_Contig_17140 11 . C T 2321.33 . AB=0.612903;ABP=16.7396;AC=4;AF=0.5;AN=8;AO=76;CIGAR=1X;DP=124;DPB=124;DPRA=0;EPP=168.042;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.934211;PAIREDR=0.854167;PAO=0;PQA=0;PQR=0;PRO=0;QA=3062;QR=1919;RO=48;RPL=0;RPP=168.042;RPPR=107.241;RPR=76;RUN=1;SAF=76;SAP=168.042;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:46:21,25:21:840:25:995:-75.9945,0,-62.0665 0/1:45:14,31:14:558:31:1257:-99.8499,0,-37.0161 0/1:23:7,16:7:281:16:648:-51.7296,0,-18.7385 0/1:10:6,4:6:240:4:162:-11.9567,0,-18.9651 dDocent_Contig_17141 21 . A G 410.2 . AB=0.432432;ABP=4.47751;AC=2;AF=0.25;AN=8;AO=16;CIGAR=1X;DP=74;DPB=74;DPRA=1;EPP=37.7539;EPPR=128.956;GTI=0;LEN=1;MEANALT=1;MQM=50;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.0625;PAIREDR=0.724138;PAO=0;PQA=0;PQR=0;PRO=0;QA=614;QR=2335;RO=58;RPL=0;RPP=37.7539;RPPR=128.956;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:24:24,0:24:973:0:0:0,-7.22472,-87.8678 0/1:27:14,13:14:567:13:497:-36.5839,0,-43.2447 0/1:10:7,3:7:283:3:117:-7.8341,0,-22.8327 0/0:13:13,0:13:512:0:0:0,-3.91339,-46.427 dDocent_Contig_17142 9 . C A 119.605 . AB=0.25;ABP=16.0391;AC=1;AF=0.25;AN=4;AO=6;CIGAR=1X;DP=47;DPB=47;DPRA=1.04348;EPP=16.0391;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=228;QR=1517;RO=40;RPL=0;RPP=16.0391;RPPR=89.8692;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:18,6:18:694:6:228:-13.6594,0,-55.5687 0/0:23:22,0:22:823:0:0:0,-6.62266,-74.016 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_17143 36 . A G 92.3255 . AB=0.155556;ABP=49.3833;AC=2;AF=0.25;AN=8;AO=7;CIGAR=1X;DP=50;DPB=50;DPRA=9;EPP=18.2106;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=282;QR=1680;RO=43;RPL=0;RPP=18.2106;RPPR=96.3836;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:25,3:25:977:3:119:-2.66617,0,-79.8024 0/1:17:13,4:13:510:4:163:-9.94092,0,-41.1278 0/0:4:4,0:4:153:0:0:0,-1.20412,-14.1403 0/0:1:1,0:1:40:0:0:0,-0.30103,-3.99568 dDocent_Contig_17144 23 . G A 56.5169 . AB=0.290323;ABP=14.8483;AC=2;AF=0.25;AN=8;AO=9;CIGAR=1X;DP=77;DPB=77;DPRA=0.673913;EPP=14.8328;EPPR=121.454;GTI=0;LEN=1;MEANALT=1;MQM=20.8889;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.878788;PAO=0;PQA=0;PQR=0;PRO=0;QA=327;QR=2626;RO=66;RPL=0;RPP=22.5536;RPPR=146.327;RPR=9;RUN=1;SAF=8;SAP=14.8328;SAR=1;SRF=63;SRP=121.454;SRR=3;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:14,7:14:553:7:256:-7.04186,0,-43.7893 0/0:28:27,0:27:1089:0:0:0,-8.12781,-97.8972 0/1:10:8,2:8:305:2:71:-0.858596,0,-24.7948 0/0:18:17,0:17:679:0:0:0,-5.11751,-61.0527 dDocent_Contig_17145 114 . T A 32.3836 . AB=0.285714;ABP=5.80219;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X;DP=15;DPB=15;DPRA=2.625;EPP=7.35324;EPPR=31.2394;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=71;QR=453;RO=13;RPL=0;RPP=7.35324;RPPR=31.2394;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=31.2394;SRR=13;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:7:5,2:5:172:2:71:-4.63485,0,-13.7102 0/0:6:6,0:6:214:0:0:0,-1.80618,-19.6078 0/0:1:1,0:1:35:0:0:0,-0.30103,-3.49863 0/0:1:1,0:1:32:0:0:0,-0.30103,-3.19931 dDocent_Contig_17146 137 . C A 58.0745 . AB=0.272727;ABP=7.94546;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=38;DPB=38;DPRA=1.22222;EPP=9.52472;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=116;QR=1350;RO=35;RPL=0;RPP=9.52472;RPPR=79.0118;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=79.0118;SRR=35;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:15:15,0:15:574:0:0:0,-4.51545,-52.0017 0/1:11:8,3:8:311:3:116:-7.50637,0,-25.043 0/0:7:7,0:7:270:0:0:0,-2.10721,-24.6653 0/0:5:5,0:5:195:0:0:0,-1.50515,-17.9242 dDocent_Contig_17148 136 . G A 31.5291 . AB=0.222222;ABP=9.04217;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=23;DPB=23;DPRA=1.28571;EPP=7.35324;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=810;RO=21;RPL=0;RPP=7.35324;RPPR=48.6112;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=48.6112;SRR=21;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 0/0:9:9,0:9:352:0:0:0,-2.70927,-32.0382 0/1:9:7,2:7:267:2:81:-4.97646,0,-21.681 0/0:5:5,0:5:191:0:0:0,-1.50515,-17.557 dDocent_Contig_17150 14 . A T 142.154 . AB=0.428571;ABP=3.32051;AC=3;AF=0.375;AN=8;AO=3;CIGAR=2M1X2M3D1X2M2X1M1X;DP=50;DPB=49.2;DPRA=0.233333;EPP=9.52472;EPPR=87.6977;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=119;QR=1537;RO=39;RPL=0;RPP=9.52472;RPPR=87.6977;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:7:3,0,3:3:120:0,3:0,119:-8.88306,-9.78615,-19.6714,0,-9.87783,-8.97474 0|0:30:27,2,0:27:1061:2,0:81,0:0,-1.43874,-88.1084,-8.12781,-88.7105,-95.3904 0|1:9:6,3,0:6:237:3,0:114,0:-7.92144,0,-18.9942,-9.72762,-19.8973,-29.2403 0|1:4:3,1,0:3:119:1,0:40,0:-2.79156,0,-9.89127,-3.69465,-10.1923,-13.4882 dDocent_Contig_17153 39 . T C 346.931 . AB=0.378378;ABP=7.76406;AC=2;AF=0.25;AN=8;AO=14;CIGAR=1X;DP=56;DPB=56;DPRA=1.94737;EPP=33.4109;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=539;QR=1662;RO=42;RPL=0;RPP=33.4109;RPPR=94.2121;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:13,8:13:513:8:308:-21.7506,0,-40.1939 0/1:16:10,6:10:400:6:231:-16.3399,0,-31.5412 0/0:18:18,0:18:708:0:0:0,-5.41854,-64.0455 0/0:1:1,0:1:41:0:0:0,-0.30103,-4.09457 dDocent_Contig_17154 169 . A G 32.966 . AB=0.25;ABP=7.35324;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X;DP=24;DPB=24;DPRA=1.5;EPP=7.35324;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=8.67362e-19;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=78;QR=873;RO=22;RPL=2;RPP=7.35324;RPPR=50.7827;RPR=0;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=50.7827;SRR=22;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:8:8,0:8:320:0:0:0,-2.40824,-29.1668 0/0:2:2,0:2:80:0:0:0,-0.60206,-7.59157 0/0:6:6,0:6:237:0:0:0,-1.80618,-21.7017 0/1:8:6,2:6:236:2:78:-4.99506,0,-19.202 dDocent_Contig_17156 13 . T C 112.884 . AB=0.294118;ABP=9.26925;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=47;DPB=47;DPRA=1.7;EPP=13.8677;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=197;QR=1599;RO=42;RPL=0;RPP=13.8677;RPPR=94.2121;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:15:15,0:15:570:0:0:0,-4.51545,-51.6391 0/1:17:12,5:12:457:5:197:-12.9874,0,-36.36 0/0:7:7,0:7:272:0:0:0,-2.10721,-24.8452 0/0:8:8,0:8:300:0:0:0,-2.40824,-27.3552 dDocent_Contig_17157 52 . A G 235.608 . AB=0.244444;ABP=28.5372;AC=1;AF=0.125;AN=8;AO=11;CIGAR=1X;DP=143;DPB=143;DPRA=1.37755;EPP=26.8965;EPPR=289.645;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.924242;PAO=0;PQA=0;PQR=0;PRO=0;QA=424;QR=5195;RO=132;RPL=11;RPP=26.8965;RPPR=289.645;RPR=0;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=132;SRP=289.645;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:45:34,11:34:1321:11:424:-24.9587,0,-105.6 0/0:23:23,0:23:906:0:0:0,-6.92369,-81.8451 0/0:43:43,0:43:1712:0:0:0,-12.9443,-154.307 0/0:32:32,0:32:1256:0:0:0,-9.63296,-113.31 dDocent_Contig_17158 24 . T A 1373.9 . AB=0.635135;ABP=14.748;AC=4;AF=0.5;AN=8;AO=47;CIGAR=1X2M2X3M1X;DP=74;DPB=74;DPRA=0;EPP=105.07;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.553191;PAIREDR=0.84;PAO=0;PQA=0;PQR=0;PRO=0;QA=1843;QR=981;RO=25;RPL=0;RPP=105.07;RPPR=57.2971;RPR=47;RUN=1;SAF=47;SAP=105.07;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:10:3,7:3:117:7:275:-22.1085,0,-7.89961 0|1:32:10,21:10:389:21:834:-65.6372,0,-25.625 0|1:13:4,8:4:156:8:318:-24.9759,0,-10.4069 0|1:19:8,11:8:319:11:416:-32.0664,0,-23.3584 dDocent_Contig_17159 25 . A T 34.9401 . AB=0.116667;ABP=79.5909;AC=3;AF=0.375;AN=8;AO=7;CIGAR=1X;DP=76;DPB=76;DPRA=1.25;EPP=18.2106;EPPR=152.842;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.857143;PAIREDR=0.57971;PAO=0;PQA=0;PQR=0;PRO=0;QA=272;QR=2761;RO=69;RPL=0;RPP=18.2106;RPPR=152.842;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=69;SRP=152.842;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:21,2:21:836:2:81:-0.762044,0,-68.6284 0/1:17:14,3:14:566:3:110:-5.13973,0,-46.1646 0/0:16:16,0:16:643:0:0:0,-4.81648,-58.2054 0/1:20:18,2:18:716:2:81:-1.66513,0,-58.7476 dDocent_Contig_17160 13 . G A 1690.74 . AB=0.475806;ABP=3.64073;AC=4;AF=0.5;AN=8;AO=59;CIGAR=1X;DP=124;DPB=124;DPRA=0;EPP=131.127;EPPR=144.156;GTI=0;LEN=1;MEANALT=1;MQM=59.7288;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.830508;PAIREDR=0.938462;PAO=0;PQA=0;PQR=0;PRO=0;QA=2362;QR=2597;RO=65;RPL=0;RPP=131.127;RPPR=144.156;RPR=59;RUN=1;SAF=59;SAP=131.127;SAR=0;SRF=65;SRP=144.156;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:23,13:23:910:13:511:-35.4943,0,-71.3661 0/1:38:14,24:14:567:24:970:-76.03,0,-39.9337 0/1:33:18,15:18:730:15:594:-43.8597,0,-56.0905 0/1:17:10,7:10:390:7:287:-21.0877,0,-30.3309 dDocent_Contig_17161 28 . T C 102.103 . AB=0.166667;ABP=43.5445;AC=2;AF=0.25;AN=8;AO=7;CIGAR=1X2M1X;DP=70;DPB=70;DPRA=1.5;EPP=18.2106;EPPR=139.813;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.809524;PAO=0;PQA=0;PQR=0;PRO=0;QA=283;QR=2459;RO=63;RPL=0;RPP=18.2106;RPPR=139.813;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=63;SRP=139.813;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:28:23,5:23:893:5:202:-10.1332,0,-72.2488 0|0:16:16,0:16:630:0:0:0,-4.81648,-57.0375 0|1:14:12,2:12:469:2:81:-3.47131,0,-38.3437 0|0:12:12,0:12:467:0:0:0,-3.61236,-42.3771 dDocent_Contig_17162 89 . C T 687.924 . AB=0.8;ABP=26.4622;AC=1;AF=0.25;AN=4;AO=24;CIGAR=1X;DP=36;DPB=36;DPRA=5;EPP=55.1256;EPPR=29.068;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=880;QR=444;RO=12;RPL=24;RPP=55.1256;RPPR=29.068;RPR=0;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=12;SRP=29.068;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:6,24:6:222:24:880:-70.4914,0,-11.3072 0/0:6:6,0:6:222:0:0:0,-1.80618,-20.3381 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_17164 1 . N G 198.008 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=6;CIGAR=1X;DP=6;DPB=6;DPRA=0;EPP=16.0391;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=209;QR=0;RO=0;RPL=0;RPP=16.0391;RPPR=0;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:105:-9.79616,-0.90309,0 1/1:3:0,3:0:0:3:104:-9.70309,-0.90309,0 dDocent_Contig_17165 28 . G C 2027.25 . AB=0.676768;ABP=29.8795;AC=4;AF=0.5;AN=8;AO=67;CIGAR=1X;DP=99;DPB=99;DPRA=0;EPP=148.499;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2651;QR=1291;RO=32;RPL=0;RPP=148.499;RPPR=72.4974;RPR=67;RUN=1;SAF=67;SAP=148.499;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:51:15,36:15:609:36:1432:-113.782,0,-39.7951 0/1:37:12,25:12:482:25:977:-77.0912,0,-32.5937 0/1:6:2,4:2:81:4:161:-13.0687,0,-5.87955 0/1:5:3,2:3:119:2:81:-6.18058,0,-9.58986 dDocent_Contig_17167 20 . A T 883.636 . AB=0.0740741;ABP=45.5551;AC=0;AF=0;AN=8;AO=4;CIGAR=2X1M2X1M;DP=90;DPB=90;DPRA=1.65789;EPP=11.6962;EPPR=96.3836;GTI=0;LEN=1;MEANALT=4;MQM=19;MQMR=60;NS=4;NUMALT=4;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=76;QR=1682;RO=43;RPL=0;RPP=11.6962;RPPR=96.3836;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:27:11,4,2,0,9:11:430:4,2,0,9:116,44,0,363:-26.7079,-21.8885,-56.057,-27.2202,-54.4596,-61.9905,-30.0192,-57.2611,-62.5926,-65.3981,0,-27.3175,-32.6499,-35.4512,-32.7419 0|0:19:0,0,0,2,16:0:0:0,0,2,16:0,0,80,652:-58.7942,-58.7942,-58.7942,-58.7942,-58.7942,-58.7942,-56.1837,-56.1837,-56.1837,-55.5817,-4.81648,-4.81648,-4.81648,-2.19025,0 0|0:36:30,0,2,1,2:30:1173:0,2,1,2:0,32,41,77:0,-9.0309,-105.599,-7.33638,-103.867,-103.265,-7.72456,-104.287,-102.556,-103.986,-2.63314,-99.2758,-97.5444,-97.9643,-98.6738 0|0:8:2,4,0,0,2:2:79:4,0,0,2:90,0,0,82:-6.23742,-1.14817,-6.43758,-6.83948,-7.6417,-13.3724,-6.83948,-7.6417,-13.3724,-13.3724,0,-0.866121,-6.56733,-6.56733,-5.96527 dDocent_Contig_17168 10 . G T 377.354 . AB=0.22619;ABP=57.7107;AC=4;AF=0.5;AN=8;AO=19;CIGAR=1X;DP=84;DPB=84;DPRA=0;EPP=44.2683;EPPR=144.156;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=755;QR=2484;RO=65;RPL=0;RPP=44.2683;RPPR=144.156;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=65;SRP=144.156;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:19,5:19:735:5:200:-11.1546,0,-59.233 0/1:12:10,2:10:366:2:79:-3.88488,0,-29.6604 0/1:26:16,10:16:621:10:395:-28.0801,0,-48.3934 0/1:22:20,2:20:762:2:81:-1.06307,0,-62.2664 dDocent_Contig_17170 34 . C T 141.322 . AB=0.181818;ABP=41.702;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=121;DPB=121;DPRA=1.71429;EPP=20.3821;EPPR=248.387;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=319;QR=4533;RO=113;RPL=0;RPP=20.3821;RPPR=248.387;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=113;SRP=248.387;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:49:49,0:49:1973:0:0:0,-14.7505,-177.76 0/0:18:18,0:18:729:0:0:0,-5.41854,-65.9347 0/1:44:36,8:36:1432:8:319:-15.8312,0,-115.881 0/0:10:10,0:10:399:0:0:0,-3.0103,-36.2668 dDocent_Contig_17171 9 . C A 96.2941 . AB=0.238095;ABP=15.5221;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=76;DPB=76;DPRA=1.45161;EPP=16.0391;EPPR=155.013;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=231;QR=2662;RO=70;RPL=0;RPP=16.0391;RPPR=155.013;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=70;SRP=155.013;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:18:18,0:18:682:0:0:0,-5.41854,-61.7083 0/0:24:23,1:23:872:1:39:0,-3.32816,-74.896 0/1:21:16,5:16:603:5:192:-11.3284,0,-48.2846 0/0:13:13,0:13:505:0:0:0,-3.91339,-45.7991 dDocent_Contig_17172 21 . G T 104.388 . AB=0.163265;ABP=51.2702;AC=3;AF=0.375;AN=8;AO=8;CIGAR=1X;DP=58;DPB=58;DPRA=1.81481;EPP=20.3821;EPPR=87.0897;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.875;PAIREDR=0.5;PAO=0;PQA=0;PQR=0;PRO=0;QA=302;QR=1925;RO=50;RPL=0;RPP=20.3821;RPPR=111.584;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=47;SRP=87.0897;SRR=3;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:8,1:8:313:1:40:-1.28641,0,-25.8222 0/1:13:12,1:12:463:1:41:-0.181177,0,-38.0973 0/0:9:9,0:9:353:0:0:0,-2.70927,-32.1289 0/1:27:21,6:21:796:6:221:-12.1157,0,-63.8117 dDocent_Contig_17173 105 . N C 60.7923 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=3X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=58.5;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=64;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. 1|1:2:0,2:0:0:2:64:-6.07814,-0.60206,0 .:.:.:.:.:.:.:. dDocent_Contig_17174 20 . C T 900.461 . AB=0.0811663;ABP=1936.58;AC=2;AF=0.25;AN=8;AO=138;CIGAR=2X;DP=1828;DPB=1828;DPRA=0;EPP=302.673;EPPR=3110.39;GTI=0;LEN=1;MEANALT=6.25;MQM=59.1957;MQMR=59.4927;NS=4;NUMALT=2;ODDS=0;PAIRED=0.710145;PAIREDR=0.91754;PAO=0;PQA=0;PQR=0;PRO=0;QA=5477;QR=56524;RO=1431;RPL=0;RPP=302.673;RPPR=3110.39;RPR=138;RUN=1;SAF=138;SAP=302.673;SAR=0;SRF=1431;SRP=3110.39;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:538:405,35,50:405:16026:35,50:1379,1999:-42.7387,-51.3922,-1358.47,0,-1204.35,-1302.56 0|1:526:400,51,46:400:15832:51,46:2026,1814:-46.3398,0,-1284.62,-17.5271,-1150.75,-1303.66 0|0:559:464,35,29:464:18241:35,29:1400,1152:0,-24.4004,-1506.93,-44.8424,-1422.63,-1529.17 0|1:205:162,17,13:162:6425:17,13:672,531:-6.36556,0,-523.087,-11.3082,-484.388,-535.603 dDocent_Contig_17176 21 . G A 33.0672 . AB=0.157895;ABP=22.325;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=71;DPB=71;DPRA=1.09615;EPP=9.52472;EPPR=150.67;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=115;QR=2578;RO=68;RPL=0;RPP=9.52472;RPPR=150.67;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=68;SRP=150.67;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:35:35,0:35:1326:0:0:0,-10.536,-119.622 0/1:19:16,3:16:608:3:115:-5.00546,0,-49.3388 0/0:11:11,0:11:412:0:0:0,-3.31133,-37.4277 0/0:6:6,0:6:232:0:0:0,-1.80618,-21.2485 dDocent_Contig_17177 91 . T A 100.873 . AB=0;ABP=0;AC=2;AF=0.333333;AN=6;AO=3;CIGAR=1X;DP=16;DPB=16;DPRA=0.461538;EPP=9.52472;EPPR=31.2394;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=103;QR=430;RO=13;RPL=3;RPP=9.52472;RPPR=31.2394;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=13;SRP=31.2394;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:103:-9.60997,-0.90309,0 ./.:.:.:.:.:.:.:. 0/0:8:8,0:8:269:0:0:0,-2.40824,-24.5385 0/0:5:5,0:5:161:0:0:0,-1.50515,-14.8073 dDocent_Contig_17178 14 . T C 810.42 . AB=0.238532;ABP=67.7361;AC=2;AF=0.25;AN=8;AO=26;CIGAR=1X1M1I2M2X;DP=109;DPB=121.167;DPRA=0;EPP=59.4686;EPPR=76.8404;GTI=0;LEN=1;MEANALT=4.75;MQM=32.4231;MQMR=60;NS=4;NUMALT=4;ODDS=2.77556e-17;PAIRED=0.269231;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1040;QR=1343;RO=34;RPL=0;RPP=59.4686;RPPR=76.8404;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:22:4,0,1,8,8:4:162:0,1,8,8:0,40,319,318:-25.0494,-26.2535,-39.6295,-22.9683,-36.3462,-36.0452,-14.7467,-28.1071,-24.8273,-25.6989,0,-13.4067,-10.1181,-1.92851,-10.9985 0|1:20:6,4,2,4,2:6:239:4,2,4,2:160,71,162,79:-10.8738,0,-18.492,-6.90068,-13.9176,-25.9897,-2.25793,-9.27362,-16.1684,-20.7406,-6.17415,-13.192,-20.0887,-15.4428,-25.2654 0|1:45:13,0,14,10,6:13:509:0,14,10,6:0,563,399,231:-42.474,-46.3874,-88.2489,0,-41.8867,-37.6722,-26.3679,-68.2187,-21.8661,-65.2084,-27.6824,-69.5488,-23.1798,-49.5233,-67.7426 0|0:22:11,0,2,4,4:11:433:0,2,4,4:0,75,160,161:-9.96096,-13.2723,-48.8876,-7.13391,-42.7463,-42.1442,-0.0904119,-35.7062,-29.5653,-34.5021,0,-35.6167,-29.4757,-22.4346,-34.4126 dDocent_Contig_17179 80 . G A 43.0717 . AB=0;ABP=0;AC=2;AF=0.25;AN=8;AO=2;CIGAR=1X;DP=33;DPB=33;DPRA=0.193548;EPP=7.35324;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=39;QR=1068;RO=31;RPL=2;RPP=7.35324;RPPR=70.3259;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:39:-3.70479,-0.60206,0 0/0:5:5,0:5:175:0:0:0,-1.50515,-16.0937 0/0:11:11,0:11:375:0:0:0,-3.31133,-34.0793 0/0:15:15,0:15:518:0:0:0,-4.51545,-46.9483 dDocent_Contig_17181 8 . A C 639.598 . AB=0.242647;ABP=81.2472;AC=4;AF=0.5;AN=8;AO=33;CIGAR=1X;DP=136;DPB=136;DPRA=0;EPP=74.6689;EPPR=226.672;GTI=0;LEN=1;MEANALT=1;MQM=45.6061;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.0909091;PAIREDR=0.854369;PAO=0;PQA=0;PQR=0;PRO=0;QA=1270;QR=3962;RO=103;RPL=0;RPP=74.6689;RPPR=226.672;RPR=33;RUN=1;SAF=33;SAP=74.6689;SAR=0;SRF=103;SRP=226.672;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:26,5:26:1005:5:193:-7.64691,0,-81.4288 0/1:20:14,6:14:526:6:224:-13.8231,0,-41.6591 0/1:53:37,16:37:1426:16:619:-38.9399,0,-112.666 0/1:32:26,6:26:1005:6:234:-10.9479,0,-81.1278 dDocent_Contig_17182 10 . G A 39.083 . AB=0.176471;ABP=18.4661;AC=1;AF=0.125;AN=8;AO=3;CIGAR=2X;DP=49;DPB=49;DPRA=1.59375;EPP=9.52472;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.630435;PAO=0;PQA=0;PQR=0;PRO=0;QA=115;QR=1858;RO=46;RPL=0;RPP=9.52472;RPPR=102.898;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:12:12,0:12:490:0:0:0,-3.61236,-44.4509 0|0:10:10,0:10:400:0:0:0,-3.0103,-36.3599 0|0:10:10,0:10:405:0:0:0,-3.0103,-36.8106 0|1:17:14,3:14:563:3:115:-5.60722,0,-45.8962 dDocent_Contig_17183 19 . T C 514.469 . AB=0.338462;ABP=17.7429;AC=4;AF=0.5;AN=8;AO=22;CIGAR=1X;DP=65;DPB=65;DPRA=0;EPP=50.7827;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=59.6364;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.930233;PAO=0;PQA=0;PQR=0;PRO=0;QA=855;QR=1715;RO=43;RPL=0;RPP=50.7827;RPPR=96.3836;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:10,4:10:395:4:157:-10.2944,0,-31.6938 0/1:13:11,2:11:445:2:81:-3.74597,0,-36.4927 0/1:26:17,9:17:671:9:357:-24.6652,0,-52.8922 0/1:12:5,7:5:204:7:260:-20.1373,0,-15.1317 dDocent_Contig_17184 24 . T C 119.253 . AB=0.156863;ABP=55.1682;AC=2;AF=0.25;AN=8;AO=8;CIGAR=1X;DP=96;DPB=96;DPRA=1.13333;EPP=20.3821;EPPR=194.1;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.5;PAIREDR=0.772727;PAO=0;PQA=0;PQR=0;PRO=0;QA=326;QR=3360;RO=88;RPL=0;RPP=20.3821;RPPR=194.1;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=88;SRP=194.1;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:20,2:20:730:2:82:-1.15702,0,-59.3898 0/1:29:23,6:23:905:6:244:-13.609,0,-73.0273 0/0:31:31,0:31:1177:0:0:0,-9.33193,-106.211 0/0:14:14,0:14:548:0:0:0,-4.21442,-49.6645 dDocent_Contig_17186 15 . T A 317.337 . AB=0.188119;ABP=88.3427;AC=3;AF=0.375;AN=8;AO=19;CIGAR=1X;DP=133;DPB=133;DPRA=1.05208;EPP=44.2683;EPPR=250.558;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.991228;PAO=0;PQA=0;PQR=0;PRO=0;QA=738;QR=4549;RO=114;RPL=0;RPP=44.2683;RPPR=250.558;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=114;SRP=250.558;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:32:32,0:32:1272:0:0:0,-9.63296,-114.742 0/1:36:26,10:26:1050:10:394:-24.9783,0,-83.9531 0/1:24:19,5:19:753:5:182:-9.50362,0,-60.8639 0/1:41:37,4:37:1474:4:162:-2.62473,0,-120.565 dDocent_Contig_17187 9 . C T 600.146 . AB=0.65625;ABP=9.79615;AC=2;AF=0.25;AN=8;AO=21;CIGAR=2X2M1X;DP=63;DPB=63;DPRA=1.03226;EPP=48.6112;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=805;QR=1593;RO=41;RPL=0;RPP=48.6112;RPPR=92.0407;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:10:10,0:10:388:0:0:0,-3.0103,-35.2757 0|0:21:21,0:21:813:0:0:0,-6.32163,-73.4918 0|1:23:7,16:7:276:16:616:-48.8512,0,-18.286 0|1:9:3,5:3:116:5:189:-14.5613,0,-8.00508 dDocent_Contig_17189 20 . C T 2173.45 . AB=0.166667;ABP=14.5915;AC=3;AF=0.5;AN=6;AO=62;CIGAR=1X;DP=93;DPB=93;DPRA=1.71429;EPP=137.642;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=59.9194;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2466;QR=1209;RO=31;RPL=0;RPP=137.642;RPPR=70.3259;RPR=62;RUN=1;SAF=62;SAP=137.642;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:60:0,60:0:0:60:2385:-214.793,-18.0618,0 ./.:.:.:.:.:.:.:. 0/0:21:21,0:21:808:0:0:0,-6.32163,-73.0285 0/1:12:10,2:10:401:2:81:-4.07337,0,-32.8372 dDocent_Contig_17190 33 . G A 346.17 . AB=0.378378;ABP=7.76406;AC=2;AF=0.25;AN=8;AO=15;CIGAR=1X;DP=61;DPB=61;DPRA=9.83333;EPP=35.5824;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=577;QR=1805;RO=46;RPL=0;RPP=35.5824;RPPR=102.898;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:18,3:18:716:3:120:-4.86627,0,-58.4465 0/0:22:21,1:21:822:1:39:0,-2.7261,-70.4009 0/1:16:5,11:5:193:11:418:-33.1482,0,-12.9243 0/0:2:2,0:2:74:0:0:0,-0.60206,-7.02486 dDocent_Contig_17192 25 . A G 110.795 . AB=0.277778;ABP=10.7311;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=50;DPB=50;DPRA=1.6875;EPP=13.8677;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=198;QR=1810;RO=45;RPL=0;RPP=13.8677;RPPR=100.727;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:10:10,0:10:402:0:0:0,-3.0103,-36.539 0/1:18:13,5:13:523:5:198:-12.7779,0,-41.9986 0/0:21:21,0:21:845:0:0:0,-6.32163,-76.363 0/0:1:1,0:1:40:0:0:0,-0.30103,-3.99568 dDocent_Contig_17193 57 . T A 80.8887 . AB=0.266667;ABP=10.1038;AC=2;AF=0.25;AN=8;AO=4;CIGAR=1X;DP=35;DPB=35;DPRA=0.75;EPP=11.6962;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.75;PAIREDR=0.83871;PAO=0;PQA=0;PQR=0;PRO=0;QA=162;QR=1238;RO=31;RPL=4;RPP=11.6962;RPPR=70.3259;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:9:9,0:9:362:0:0:0,-2.70927,-32.944 0/0:11:11,0:11:433:0:0:0,-3.31133,-39.321 0/1:10:9,1:9:367:1:41:-1.08427,0,-30.385 0/1:5:2,3:2:76:3:121:-9.77484,0,-5.70911 dDocent_Contig_17194 21 . C T 2377.96 . AB=0.622047;ABP=19.4417;AC=4;AF=0.5;AN=8;AO=79;CIGAR=2X;DP=127;DPB=127;DPRA=0;EPP=174.557;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=0.367089;PAIREDR=0.625;PAO=0;PQA=0;PQR=0;PRO=0;QA=3135;QR=1931;RO=48;RPL=0;RPP=174.557;RPPR=107.241;RPR=79;RUN=1;SAF=79;SAP=174.557;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:30:7,23:7:283:23:905:-72.7267,0,-16.8125 0|1:27:4,23:4:163:23:911:-74.1642,0,-6.93062 0|1:23:12,11:12:489:11:440:-33.0312,0,-37.4376 0|1:47:25,22:25:996:22:879:-65.2716,0,-75.7911 dDocent_Contig_17195 22 . G A 1349.75 . AB=0.649485;ABP=21.8372;AC=4;AF=0.5;AN=8;AO=63;CIGAR=1X;DP=97;DPB=97;DPRA=0;EPP=139.813;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=36.4127;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=0.015873;PAIREDR=0.617647;PAO=0;PQA=0;PQR=0;PRO=0;QA=2507;QR=1363;RO=34;RPL=0;RPP=139.813;RPPR=76.8404;RPR=63;RUN=1;SAF=63;SAP=139.813;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:3,25:3:123:25:1003:-54.9783,0,-3.03595 0/1:39:11,28:11:445:28:1102:-67.4445,0,-28.6655 0/1:19:13,6:13:512:6:242:-11.1702,0,-40.6985 0/1:11:7,4:7:283:4:160:-8.7705,0,-22.532 dDocent_Contig_17199 107 . N G 97.929 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=57;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=105;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:105:-9.79235,-0.90309,0 dDocent_Contig_17201 33 . T C 44.0607 . AB=0.5;ABP=3.0103;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X;DP=68;DPB=68;DPRA=0.1875;EPP=7.35324;EPPR=144.156;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.969231;PAO=0;PQA=0;PQR=0;PRO=0;QA=77;QR=2571;RO=65;RPL=0;RPP=7.35324;RPPR=144.156;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=65;SRP=144.156;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:18:18,0:18:712:0:0:0,-5.41854,-64.4062 0/0:34:33,0:33:1300:0:0:0,-9.93399,-116.849 0/0:12:12,0:12:479:0:0:0,-3.61236,-43.4614 0/1:4:2,2:2:80:2:77:-6.10502,0,-6.38767 dDocent_Contig_17203 138 . C T 572.189 . AB=0.446429;ABP=4.40625;AC=4;AF=0.5;AN=8;AO=25;CIGAR=1X;DP=56;DPB=56;DPRA=0;EPP=57.2971;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=889;QR=1074;RO=31;RPL=0;RPP=57.2971;RPPR=70.3259;RPR=25;RUN=1;SAF=0;SAP=57.2971;SAR=25;SRF=0;SRP=70.3259;SRR=31;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:15,6:15:532:6:215:-13.3775,0,-41.8919 0/1:16:10,6:10:331:6:212:-14.6086,0,-25.2931 0/1:14:5,9:5:175:9:321:-25.019,0,-11.8787 0/1:5:1,4:1:36:4:141:-11.5319,0,-2.09312 dDocent_Contig_17205 68 . G T 52.6343 . AB=0.333333;ABP=5.18177;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=26;DPB=26;DPRA=6;EPP=11.6962;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=0.772727;PAO=0;PQA=0;PQR=0;PRO=0;QA=137;QR=718;RO=22;RPL=4;RPP=11.6962;RPPR=50.7827;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:15:14,1:14:467:1:32:0,-1.31614,-39.1508 0/0:2:2,0:2:43:0:0:0,-0.60206,-4.0837 ./.:.:.:.:.:.:.:. 0/1:9:6,3:6:208:3:105:-7.08689,0,-16.3503 dDocent_Contig_17206 120 . G A 68.5858 . AB=0.263158;ABP=12.2676;AC=2;AF=0.25;AN=8;AO=5;CIGAR=1X;DP=25;DPB=25;DPRA=3.16667;EPP=13.8677;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=170;QR=690;RO=20;RPL=0;RPP=13.8677;RPPR=46.4397;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=46.4397;SRR=20;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:8:6,2:6:210:2:68:-4.04964,0,-16.8342 0/0:4:4,0:4:138:0:0:0,-1.20412,-12.7604 0/1:11:8,3:8:272:3:102:-6.20557,0,-21.5005 0/0:2:2,0:2:70:0:0:0,-0.60206,-6.6474 dDocent_Contig_17209 20 . T A 931.945 . AB=0.0909091;ABP=34.9902;AC=0;AF=0;AN=8;AO=2;CIGAR=1X3M1X;DP=89;DPB=89;DPRA=0;EPP=7.35324;EPPR=113.755;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0.666667;PAO=0;PQA=0;PQR=0;PRO=0;QA=79;QR=2038;RO=51;RPL=0;RPP=7.35324;RPPR=113.755;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:24:12,0,12:12:480:0,12:0,462:-34.6237,-38.236,-77.7835,0,-39.9393,-36.3269 0|0:33:16,0,17:16:638:0,17:0,661:-49.7652,-54.5817,-107.127,0,-52.9388,-47.8213 0|0:22:17,2,3:17:676:2,3:79,118:-4.56639,-3.18233,-58.2418,0,-49.1593,-54.7565 0|0:10:6,0,4:6:244:0,4:0,159:-11.6369,-13.443,-33.5757,0,-20.5326,-19.3285 dDocent_Contig_17210 69 . A C 62.0038 . AB=0.3;ABP=6.48466;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=38;DPB=38;DPRA=1.53333;EPP=11.6962;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=151;QR=1282;RO=33;RPL=4;RPP=11.6962;RPPR=74.6689;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:10:9,0:9:360:0:0:0,-2.70927,-32.3726 0/1:10:7,3:7:253:3:117:-7.89899,0,-20.1034 0/0:13:12,1:12:476:1:34:0,-0.514479,-39.7922 0/0:5:5,0:5:193:0:0:0,-1.50515,-17.7373 dDocent_Contig_17211 84 . A G 61.051 . AB=0.5;ABP=3.0103;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=24;DPB=24;DPRA=1;EPP=9.52472;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=103;QR=659;RO=21;RPL=3;RPP=9.52472;RPPR=48.6112;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:7:7,0:7:215:0:0:0,-2.10721,-19.6524 0/0:2:2,0:2:57:0:0:0,-0.60206,-5.41407 0/1:6:3,3:3:103:3:103:-7.80379,0,-7.80379 0/0:9:9,0:9:284:0:0:0,-2.70927,-25.8682 dDocent_Contig_17213 53 . T C 92.3681 . AB=0.285714;ABP=8.59409;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=36;DPB=36;DPRA=1.90909;EPP=11.6962;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=164;QR=1294;RO=32;RPL=4;RPP=11.6962;RPPR=72.4974;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:15:15,0:15:606:0:0:0,-4.51545,-54.8786 0/1:14:10,4:10:405:4:164:-10.9355,0,-32.596 0/0:2:2,0:2:81:0:0:0,-0.60206,-7.68573 0/0:5:5,0:5:202:0:0:0,-1.50515,-18.5619 dDocent_Contig_17214 25 . T C 85.0951 . AB=0.235294;ABP=13.3567;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=50;DPB=50;DPRA=1.0303;EPP=11.6962;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=164;QR=1844;RO=46;RPL=0;RPP=11.6962;RPPR=102.898;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:13,4:13:524:4:164:-10.0324,0,-42.3866 0/0:18:18,0:18:727:0:0:0,-5.41854,-65.7551 0/0:15:15,0:15:593:0:0:0,-4.51545,-53.7065 ./.:.:.:.:.:.:.:. dDocent_Contig_17215 47 . G T 281.038 . AB=0.366667;ABP=7.64277;AC=2;AF=0.25;AN=8;AO=11;CIGAR=1X;DP=40;DPB=40;DPRA=3;EPP=26.8965;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=442;QR=1054;RO=29;RPL=0;RPP=26.8965;RPPR=65.983;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:8:8,0:8:297:0:0:0,-2.40824,-27.0834 0/1:13:8,5:8:286:5:196:-14.0988,0,-22.1705 0/1:17:11,6:11:399:6:246:-17.4026,0,-31.1354 0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83664 dDocent_Contig_17217 13 . A T 485.68 . AB=0.217391;ABP=18.9659;AC=2;AF=0.25;AN=8;AO=5;CIGAR=2X;DP=55;DPB=55;DPRA=1.27778;EPP=13.8677;EPPR=74.6689;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=202;QR=1314;RO=33;RPL=0;RPP=13.8677;RPPR=74.6689;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:7:5,1,1:5:198:1,1:41,41:-1.8792,0,-15.984,-0.00534049,-12.9035,-15.9889 0|1:16:10,4,2:10:395:4,2:161,80:-10.2607,0,-31.296,-6.68951,-25.9169,-38.586 0|0:23:18,0,5:18:721:0,5:0,204:-9.69417,-15.1127,-74.543,0,-59.8,-58.2948 0|0:9:0,0,9:0:0:0,9:0,354:-31.8723,-31.8723,-31.8723,-2.70927,-2.70927,0 dDocent_Contig_17218 10 . C G 294.464 . AB=0.101695;ABP=84.3117;AC=4;AF=0.5;AN=8;AO=6;CIGAR=1X5M2X;DP=89;DPB=89;DPRA=0;EPP=16.0391;EPPR=111.584;GTI=0;LEN=1;MEANALT=3;MQM=53;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=0.68;PAO=0;PQA=0;PQR=0;PRO=0;QA=235;QR=1978;RO=50;RPL=0;RPP=16.0391;RPPR=111.584;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:27:18,4,2,3:18:719:4,2,3:159,80,117:-4.19089,-1.92818,-59.9523,-3.10755,-54.6738,-61.7922,0,-51.5788,-52.8133,-58.395 0|1:18:3,1,14,0:3:120:1,14,0:40,556,0:-13.0821,-10.6732,-20.3021,0,-6.59016,-5.67082,-13.9851,-20.6031,-9.88524,-23.9098 0|1:32:21,1,7,3:21:829:1,7,3:40,270,118:-15.5309,-18.556,-86.4765,0,-64.9197,-66.1078,-12.1829,-77.1102,-58.5481,-79.5024 0|1:12:8,2,2,0:8:310:2,2,0:77,79,0:-4.03347,-1.42904,-26.2919,0,-20.4894,-24.923,-6.44171,-26.894,-25.5251,-31.932 dDocent_Contig_17219 115 . C T 46.9197 . AB=0.178571;ABP=28.1373;AC=4;AF=0.5;AN=8;AO=8;CIGAR=1X;DP=48;DPB=48;DPRA=0;EPP=20.3821;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=32.5;MQMR=57.75;NS=4;NUMALT=1;ODDS=0;PAIRED=0.25;PAIREDR=0.825;PAO=0;PQA=0;PQR=0;PRO=0;QA=261;QR=1362;RO=40;RPL=0;RPP=20.3821;RPPR=89.8692;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=89.8692;SRR=40;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1:0,1:0:0:1:28:-2.79727,-0.30103,0 0/0:19:17,2:17:575:2:64:0,-1.14667,-46.4278 0/1:22:19,3:19:649:3:105:-0.26179,0,-52.1082 0/1:6:4,2:4:138:2:64:-3.28429,0,-10.9542 dDocent_Contig_17221 51 . A G 40.7403 . AB=0.4;ABP=3.44459;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=47;DPB=47;DPRA=0;EPP=11.6962;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=156;QR=1674;RO=43;RPL=4;RPP=11.6962;RPPR=96.3836;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:27:26,1:26:1023:1:40:0,-4.13213,-88.3738 0/0:15:14,1:14:532:1:38:0,-0.718181,-44.411 0/1:5:3,2:3:119:2:78:-5.89763,0,-9.58986 ./.:.:.:.:.:.:.:. dDocent_Contig_17222 13 . A T 353.3 . AB=0.214286;ABP=62.5707;AC=3;AF=0.375;AN=8;AO=18;CIGAR=1X;DP=106;DPB=106;DPRA=1.27273;EPP=42.0968;EPPR=160.936;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.715909;PAO=0;PQA=0;PQR=0;PRO=0;QA=721;QR=3453;RO=88;RPL=0;RPP=42.0968;RPPR=194.1;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=84;SRP=160.936;SRR=4;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:39:29,10:29:1152:10:399:-24.5287,0,-92.2206 0/1:33:28,5:28:1095:5:204:-8.81004,0,-88.9004 0/0:22:22,0:22:868:0:0:0,-6.62266,-78.4286 0/1:12:9,3:9:338:3:118:-7.38922,0,-27.15 dDocent_Contig_17223 31 . A T 113.051 . AB=0.571429;ABP=3.32051;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=26;DPB=26;DPRA=1.10526;EPP=11.6962;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=47;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=164;QR=890;RO=22;RPL=0;RPP=11.6962;RPPR=50.7827;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:7:3,4:3:122:4:164:-12.7027,0,-9.26528 0/0:6:6,0:6:245:0:0:0,-1.80618,-22.4295 0/0:11:11,0:11:442:0:0:0,-3.31133,-40.1349 0/0:2:2,0:2:81:0:0:0,-0.60206,-7.68573 dDocent_Contig_17224 106 . N T 65.5375 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=2X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=69;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:2:0,2:0:0:2:69:-6.55266,-0.60206,0 .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. dDocent_Contig_17225 67 . T C 51.2186 . AB=0.166667;ABP=26.1727;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=125;DPB=125;DPRA=0.712871;EPP=11.6962;EPPR=265.758;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.991736;PAO=0;PQA=0;PQR=0;PRO=0;QA=152;QR=4400;RO=121;RPL=4;RPP=11.6962;RPPR=265.758;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=121;SRP=265.758;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:41:41,0:41:1490:0:0:0,-12.3422,-134.375 0/0:28:28,0:28:1034:0:0:0,-8.42884,-93.3666 0/0:32:32,0:32:1169:0:0:0,-9.63296,-105.502 0/1:24:20,4:20:707:4:152:-6.82083,0,-56.7206 dDocent_Contig_17226 24 . T C 2177.36 . AB=0.548872;ABP=5.76954;AC=4;AF=0.5;AN=8;AO=73;CIGAR=1X;DP=133;DPB=133;DPRA=0;EPP=161.528;EPPR=133.299;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2932;QR=2430;RO=60;RPL=0;RPP=161.528;RPPR=133.299;RPR=73;RUN=1;SAF=73;SAP=161.528;SAR=0;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:56:35,21:35:1414:21:848:-59.7737,0,-110.653 0/1:35:4,31:4:162:31:1231:-100.514,0,-4.43091 0/1:34:15,19:15:613:19:771:-59.4737,0,-45.2718 0/1:8:6,2:6:241:2:82:-5.37144,0,-19.6584 dDocent_Contig_17227 142 . A G 576.723 . AB=0.416667;ABP=5.9056;AC=3;AF=0.375;AN=8;AO=20;CIGAR=3M1X;DP=48;DPB=46;DPRA=0;EPP=46.4397;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=780;QR=910;RO=24;RPL=0;RPP=46.4397;RPPR=55.1256;RPR=20;RUN=1;SAF=0;SAP=46.4397;SAR=20;SRF=0;SRP=55.1256;SRR=24;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:6:3,2,1:3:96:2,1:82,41:-5.86507,0,-7.06253,-3.38408,-4.2581,-10.7611 0|1:8:7,0,1:7:279:0,1:0,40:-1.58744,-3.69465,-26.6698,0,-23.3745,-23.0735 0|1:21:13,0,8:13:496:0,8:0,313:-22.2108,-26.1241,-66.8063,0,-41.0693,-38.6611 0|1:13:1,2,10:1:39:2,10:82,386:-34.9526,-28.4815,-31.0856,-3.58208,0,-3.77106 dDocent_Contig_17229 10 . A C 188.831 . AB=0.37931;ABP=6.67934;AC=3;AF=0.375;AN=8;AO=12;CIGAR=1X;DP=43;DPB=43;DPRA=0;EPP=29.068;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1.25;MQM=40.5833;MQMR=51.9333;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.833333;PAO=0;PQA=0;PQR=0;PRO=0;QA=488;QR=1192;RO=30;RPL=0;RPP=29.068;RPPR=68.1545;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:3:2,1:2:82:1:41:-3.19148,0,-2.03366 0/1:13:8,5:8:316:5:203:-11.689,0,-16.2327 0/1:13:8,5:8:305:5:204:-9.30453,0,-23.8891 0/0:14:12,1:12:489:1:40:0,-2.814,-43.1566 dDocent_Contig_17230 14 . T A 157.336 . AB=0.178571;ABP=53.2644;AC=3;AF=0.375;AN=8;AO=10;CIGAR=1X;DP=65;DPB=65;DPRA=2.07407;EPP=24.725;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=54.7636;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.890909;PAO=0;PQA=0;PQR=0;PRO=0;QA=409;QR=2220;RO=55;RPL=0;RPP=24.725;RPPR=122.441;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:30,6:30:1212:6:245:-11.5924,0,-98.5141 0/1:10:8,2:8:323:2:82:-4.76938,0,-10.9387 0/1:10:8,2:8:323:2:82:-4.76938,0,-26.4272 0/0:9:9,0:9:362:0:0:0,-2.70927,-32.944 dDocent_Contig_17231 14 . A T 38.9771 . AB=0.333333;ABP=4.45795;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=55;DPB=55;DPRA=0.833333;EPP=9.52472;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=119;QR=2107;RO=52;RPL=0;RPP=9.52472;RPPR=115.927;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:9:9,0:9:368:0:0:0,-2.70927,-33.4854 0/0:21:21,0:21:848:0:0:0,-6.32163,-76.6296 0/0:19:18,1:18:728:1:41:0,-1.625,-61.7475 0/1:6:4,2:4:163:2:78:-5.5966,0,-13.2522 dDocent_Contig_17232 109 . C T 202.188 . AB=0.416667;ABP=4.45795;AC=3;AF=0.375;AN=8;AO=10;CIGAR=1X;DP=33;DPB=33;DPRA=0.888889;EPP=24.725;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=351;QR=797;RO=23;RPL=0;RPP=24.725;RPPR=52.9542;RPR=10;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=52.9542;SRR=23;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:2:1,1:1:35:1:36:-2.99621,0,-2.89657 0/1:17:12,5:12:413:5:172:-10.7002,0,-32.3832 0/1:5:1,4:1:34:4:143:-11.7163,0,-1.89376 0/0:9:9,0:9:315:0:0:0,-2.70927,-28.6888 dDocent_Contig_17233 12 . T C 83.7395 . AB=0.37037;ABP=6.95112;AC=3;AF=0.375;AN=8;AO=11;CIGAR=1X;DP=34;DPB=34;DPRA=0;EPP=26.8965;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=20.6364;MQMR=58.087;NS=4;NUMALT=1;ODDS=0;PAIRED=0.272727;PAIREDR=0.956522;PAO=0;PQA=0;PQR=0;PRO=0;QA=438;QR=905;RO=23;RPL=0;RPP=26.8965;RPPR=52.9542;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:6,3:6:237:3:122:-0.0897861,0,-18.9919 0/1:7:6,1:6:230:1:38:-0.995522,0,-18.9531 0/0:7:6,1:6:245:1:41:0,-1.10752,-19.7672 0/1:11:5,6:5:193:6:237:-10.0609,0,-14.4269 dDocent_Contig_17234 36 . C T 174.276 . AB=0.113208;ABP=71.8828;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1M1X1M;DP=60;DPB=57;DPRA=2.52381;EPP=16.0391;EPPR=100.727;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0.822222;PAO=0;PQA=0;PQR=0;PRO=0;QA=246;QR=1793;RO=45;RPL=0;RPP=16.0391;RPPR=100.727;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:22:19,2,1:19:753:2,1:81,41:-0.956296,0,-61.3622,-3.29014,-58.5795,-64.9584 0|0:22:15,5,2:15:592:5,2:199,82:-11.8617,0,-47.1873,-9.60559,-41.9225,-57.7069 0|1:9:4,2,3:4:163:2,3:80,123:-8.95405,-3.57197,-16.4158,0,-6.86458,-12.5492 0|0:7:7,0,0:7:285:0,0:0,0:0,-2.10721,-26.0244,-2.10721,-26.0244,-26.0244 dDocent_Contig_17235 44 . T C 32.7865 . AB=0.166667;ABP=20.3821;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=50;DPB=50;DPRA=1.6875;EPP=9.52472;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=40;MQMR=40;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=121;QR=1863;RO=47;RPL=0;RPP=9.52472;RPPR=105.07;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:12:12,0:12:473:0:0:0,-3.61236,-39.9466 0/0:3:3,0:3:118:0:0:0,-0.90309,-10.2532 0/0:17:17,0:17:680:0:0:0,-5.11751,-56.8305 0/1:18:15,3:15:592:3:121:-4.97726,0,-44.458 dDocent_Contig_17237 107 . N C 96.8482 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=59;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=97;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1:0,1:0:0:1:34:-3.39863,-0.30103,0 1/1:2:0,2:0:0:2:63:-5.98345,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_17238 66 . G A 64.4578 . AB=0.272727;ABP=7.94546;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=45;DPB=45;DPRA=0.647059;EPP=9.52472;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.8333;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.97619;PAO=0;PQA=0;PQR=0;PRO=0;QA=121;QR=1658;RO=42;RPL=3;RPP=9.52472;RPPR=94.2121;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:8,3:8:322:3:121:-7.96866,0,-26.0359 0/0:24:24,0:24:954:0:0:0,-7.22472,-86.141 0/0:10:10,0:10:382:0:0:0,-3.0103,-34.729 ./.:.:.:.:.:.:.:. dDocent_Contig_17239 85 . T G 492.259 . AB=0;ABP=0;AC=4;AF=0.5;AN=8;AO=16;CIGAR=1X;DP=41;DPB=41;DPRA=0.64;EPP=37.7539;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=533;QR=882;RO=25;RPL=16;RPP=37.7539;RPPR=57.2971;RPR=0;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:20:20,0:20:706:0:0:0,-6.0206,-63.8657 0/0:5:5,0:5:176:0:0:0,-1.50515,-16.1853 1/1:6:0,6:0:0:6:204:-18.6939,-1.80618,0 1/1:10:0,10:0:0:10:329:-29.9299,-3.0103,0 dDocent_Contig_17240 21 . G A 80.8098 . AB=0;ABP=0;AC=2;AF=0.25;AN=8;AO=2;CIGAR=1X;DP=39;DPB=39;DPRA=0.162162;EPP=7.35324;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=1415;RO=37;RPL=0;RPP=7.35324;RPPR=83.3548;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:12:12,0:12:452:0:0:0,-3.61236,-41.0183 0/0:15:15,0:15:569:0:0:0,-4.51545,-51.5448 0/0:10:10,0:10:394:0:0:0,-3.0103,-35.8162 1/1:2:0,2:0:0:2:82:-7.77968,-0.60206,0 dDocent_Contig_17241 97 . C G 90.842 . AB=0.208333;ABP=20.744;AC=4;AF=0.666667;AN=6;AO=6;CIGAR=1X;DP=25;DPB=25;DPRA=0;EPP=16.0391;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=199;QR=381;RO=19;RPL=6;RPP=16.0391;RPPR=44.2683;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1:0,1:0:0:1:32:-3.19931,-0.30103,0 0/1:16:12,4:12:244:4:132:-7.38952,0,-17.3456 ./.:.:.:.:.:.:.:. 0/1:8:7,1:7:137:1:35:-1.09039,0,-10.1167 dDocent_Contig_17242 137 . T C 179.457 . AB=0.4;ABP=4.74748;AC=2;AF=0.25;AN=8;AO=8;CIGAR=1X;DP=29;DPB=29;DPRA=2.22222;EPP=20.3821;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=296;QR=748;RO=21;RPL=0;RPP=20.3821;RPPR=48.6112;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=48.6112;SRR=21;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:7,5:7:232:5:185:-13.3977,0,-17.5891 0/1:8:5,3:5:183:3:111:-7.94568,0,-14.4186 0/0:7:7,0:7:259:0:0:0,-2.10721,-23.6661 0/0:2:2,0:2:74:0:0:0,-0.60206,-7.02588 dDocent_Contig_17243 10 . A G 829.185 . AB=0.3;ABP=6.48466;AC=5;AF=0.625;AN=8;AO=24;CIGAR=1X;DP=39;DPB=39;DPRA=1.29167;EPP=55.1256;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=958;QR=592;RO=15;RPL=0;RPP=55.1256;RPPR=35.5824;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=15;SRP=35.5824;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:12:0,12:0:0:12:473:-42.9199,-3.61236,0 0/0:8:8,0:8:315:0:0:0,-2.40824,-28.7144 0/1:10:7,3:7:277:3:122:-8.36219,0,-22.2869 1/1:9:0,9:0:0:9:363:-33.0343,-2.70927,0 dDocent_Contig_17244 54 . A G 1160.98 . AB=0.53125;ABP=3.55317;AC=5;AF=0.625;AN=8;AO=39;CIGAR=1X;DP=69;DPB=69;DPRA=0;EPP=87.6977;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1548;QR=1179;RO=30;RPL=39;RPP=87.6977;RPPR=68.1545;RPR=0;RUN=1;SAF=39;SAP=87.6977;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:7,7:7:285:7:279:-21.2651,0,-21.81 0/1:39:18,21:18:707:21:826:-62.9138,0,-52.2131 0/1:11:5,6:5:187:6:242:-18.8462,0,-13.8764 1/1:5:0,5:0:0:5:201:-18.4705,-1.50515,0 dDocent_Contig_17245 1 . N G 98.8605 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=106;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:106:-9.88551,-0.90309,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_17246 7 . A G 91.7737 . AB=0.169492;ABP=58.9901;AC=2;AF=0.25;AN=8;AO=10;CIGAR=1X;DP=90;DPB=90;DPRA=1.90323;EPP=24.725;EPPR=176.728;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=330;QR=3080;RO=80;RPL=0;RPP=24.725;RPPR=176.728;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=80;SRP=176.728;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:49:42,7:42:1618:7:235:-6.72116,0,-131.136 0/0:13:13,0:13:500:0:0:0,-3.91339,-45.3479 0/1:10:7,3:7:270:3:95:-5.85413,0,-21.6552 0/0:18:18,0:18:692:0:0:0,-5.41854,-62.6139 dDocent_Contig_17247 188 . T C 529.638 . AB=0.619048;ABP=5.59539;AC=4;AF=0.5;AN=8;AO=17;CIGAR=1X;DP=35;DPB=35;DPRA=0.833333;EPP=39.9253;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=674;QR=659;RO=17;RPL=17;RPP=39.9253;RPPR=39.9253;RPR=0;RUN=1;SAF=0;SAP=39.9253;SAR=17;SRF=0;SRP=39.9253;SRR=17;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:1,8:1:38:8:328:-27.1811,0,-1.088 0/0:10:9,0:9:367:0:0:0,-2.70927,-32.986 1/1:4:0,4:0:0:4:145:-13.3974,-1.20412,0 0/1:12:7,5:7:254:5:201:-14.8582,0,-19.5852 dDocent_Contig_17248 7 . A C 1818.58 . AB=0.233083;ABP=85.314;AC=2;AF=0.25;AN=8;AO=31;CIGAR=1X3M1X;DP=133;DPB=133;DPRA=0;EPP=70.3259;EPPR=105.07;GTI=0;LEN=1;MEANALT=2;MQM=59.5484;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1186;QR=1791;RO=47;RPL=0;RPP=70.3259;RPPR=105.07;RPR=31;RUN=1;SAF=31;SAP=70.3259;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:49:19,12,18:19:721:12,18:463,717:-53.3258,-21.0717,-76.5694,0,-21.135,-53.6976 0|1:18:10,7,1:10:384:7,1:265,40:-18.6957,0,-29.4006,-18.4082,-28.2113,-49.6326 1|0:38:7,8,23:7:272:8,23:306,924:-76.7988,-53.8006,-73.7411,-2.75252,0,-18.1834 0|0:28:11,4,13:11:414:4,13:152,530:-40.4355,-31.2879,-63.9901,0,-21.4515,-30.0044 dDocent_Contig_17249 34 . G A 3939.95 . AB=0.633028;ABP=19.7645;AC=5;AF=0.625;AN=8;AO=123;CIGAR=1X8M;DP=167;DPB=171.222;DPRA=0;EPP=270.101;EPPR=81.1833;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=0.98374;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4893;QR=1410;RO=36;RPL=0;RPP=270.101;RPPR=81.1833;RPR=123;RUN=1;SAF=123;SAP=270.101;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:58:3,1,0,54:3:117:1,0,54:26,0,2140:-181.899,-181.037,-190.353,-182.802,-190.654,-192.419,-6.51837,-14.527,-16.2556,0 0|1:63:23,4,0,35:23:898:4,0,35:100,0,1387:-107.351,-107.577,-180.191,-114.274,-181.396,-188.099,0,-67.2389,-73.9294,-63.3933 0|1:27:6,0,2,19:6:237:0,2,19:0,72,766:-61.5259,-63.332,-82.8376,-60.55,-80.0509,-79.4489,0,-19.657,-16.906,-13.9374 0|1:19:4,0,0,15:4:158:0,0,15:0,0,600:-48.6178,-49.8219,-62.8226,-49.8219,-62.8226,-62.8226,0,-13.3964,-13.3964,-8.88091 dDocent_Contig_17251 30 . T A 2475.97 . AB=0.586207;ABP=12.3701;AC=4;AF=0.5;AN=8;AO=85;CIGAR=1X;DP=145;DPB=145;DPRA=0;EPP=187.585;EPPR=133.299;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3304;QR=2359;RO=60;RPL=0;RPP=187.585;RPPR=133.299;RPR=85;RUN=1;SAF=85;SAP=187.585;SAR=0;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:64:17,47:17:677:47:1825:-145.223,0,-41.9969 0/1:44:24,20:24:942:20:782:-57.4596,0,-71.8454 0/1:25:13,12:13:505:12:461:-34.3121,0,-38.2682 0/1:12:6,6:6:235:6:236:-18,0,-17.9058 dDocent_Contig_17253 16 . A G 268.895 . AB=0.205128;ABP=61.9184;AC=4;AF=0.5;AN=8;AO=16;CIGAR=1X;DP=78;DPB=78;DPRA=0;EPP=37.7539;EPPR=137.642;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=622;QR=2429;RO=62;RPL=0;RPP=37.7539;RPPR=137.642;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:10,4:10:397:4:162:-10.7525,0,-31.8747 0/1:42:38,4:38:1476:4:156:-1.77386,0,-120.454 0/1:8:4,4:4:159:4:149:-11.3639,0,-12.2839 0/1:14:10,4:10:397:4:155:-10.1109,0,-31.8751 dDocent_Contig_17254 23 . A G 488.843 . AB=0.4;ABP=7.35324;AC=3;AF=0.375;AN=8;AO=20;CIGAR=1X3M1X;DP=62;DPB=62;DPRA=1.38889;EPP=46.4397;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=50.4;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.35;PAIREDR=0.756098;PAO=0;PQA=0;PQR=0;PRO=0;QA=772;QR=1620;RO=41;RPL=0;RPP=46.4397;RPPR=92.0407;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:21:12,9:12:476:9:349:-25.1284,0,-36.8699 0|1:8:5,3:5:191:3:110:-7.85068,0,-15.1497 0|1:21:13,8:13:512:8:313:-21.3032,0,-40.1014 0|0:12:11,0:11:441:0:0:0,-3.31133,-39.6374 dDocent_Contig_17256 131 . C G 38.4921 . AB=0.25;ABP=7.35324;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=16;DPB=16;DPRA=2;EPP=7.35324;EPPR=33.4109;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=53.5714;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.857143;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=559;RO=14;RPL=0;RPP=7.35324;RPPR=33.4109;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=33.4109;SRR=14;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:8:6,2:6:235:2:82:-5.37144,0,-19.1108 0/0:6:6,0:6:244:0:0:0,-1.80618,-22.3388 0/0:2:2,0:2:80:0:0:0,-0.60206,-2.84741 ./.:.:.:.:.:.:.:. dDocent_Contig_17257 18 . G T 134.151 . AB=0.24;ABP=17.6895;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=94;DPB=94;DPRA=3.7;EPP=20.3821;EPPR=189.757;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.988372;PAO=0;PQA=0;PQR=0;PRO=0;QA=326;QR=3468;RO=86;RPL=0;RPP=20.3821;RPPR=189.757;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=86;SRP=189.757;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:19,6:19:771:6:244:-14.8131,0,-62.1841 0/0:49:47,2:47:1894:2:82:0,-6.97079,-162.876 0/0:11:11,0:11:438:0:0:0,-3.31133,-39.7722 0/0:9:9,0:9:365:0:0:0,-2.70927,-33.2145 dDocent_Contig_17258 72 . G T 754.985 . AB=0.484848;ABP=3.0761;AC=5;AF=0.625;AN=8;AO=26;CIGAR=1X;DP=43;DPB=43;DPRA=0;EPP=59.4686;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=984;QR=635;RO=17;RPL=26;RPP=59.4686;RPPR=39.9253;RPR=0;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:10:0,10:0:0:10:381:-34.6425,-3.0103,0 0/1:9:1,8:1:39:8:308:-25.3722,0,-1.18729 0/1:13:8,5:8:314:5:176:-12.2688,0,-24.7089 0/1:11:8,3:8:282:3:119:-7.78385,0,-22.4064 dDocent_Contig_17259 107 . N C 174.696 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=6;CIGAR=1X;DP=6;DPB=6;DPRA=0;EPP=16.0391;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=49.6667;MQMR=0;NS=3;NUMALT=1;ODDS=1.69407e-21;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=193;QR=0;RO=0;RPL=0;RPP=16.0391;RPPR=0;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:98:-7.72055,-0.90309,0 1/1:1:0,1:0:0:1:25:-2.49978,-0.30103,0 1/1:2:0,2:0:0:2:70:-6.64588,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_17260 19 . C T 159.984 . AB=0.333333;ABP=5.9056;AC=4;AF=0.5;AN=8;AO=6;CIGAR=1X;DP=29;DPB=29;DPRA=0.311111;EPP=16.0391;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=55;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=241;QR=926;RO=23;RPL=0;RPP=16.0391;RPPR=52.9542;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:15:15,0:15:599:0:0:0,-4.51545,-54.2466 0/1:5:2,3:2:82:3:121:-9.74712,0,-6.27453 0/1:7:6,1:6:245:1:40:-1.87927,0,-20.3223 1/1:2:0,2:0:0:2:80:-7.57366,-0.60206,0 dDocent_Contig_17262 14 . C T 83.9813 . AB=0.235294;ABP=13.3567;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1M2D1X;DP=43;DPB=41;DPRA=1.96154;EPP=11.6962;EPPR=85.5263;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=0;PAIREDR=0.921053;PAO=0;PQA=0;PQR=0;PRO=0;QA=163;QR=1483;RO=38;RPL=0;RPP=11.6962;RPPR=85.5263;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:1:1,0:1:40:0:0:0,-0.30103,-3.99568 0|0:12:12,0:12:470:0:0:0,-3.61236,-42.6518 0|1:17:12,4:12:477:4:163:-10.0966,0,-38.3612 0|0:13:13,0:13:496:0:0:0,-3.91339,-44.9826 dDocent_Contig_17263 16 . T G 440.057 . AB=0.201754;ABP=91.0883;AC=3;AF=0.375;AN=8;AO=23;CIGAR=1X;DP=122;DPB=122;DPRA=4.75;EPP=52.9542;EPPR=217.986;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=918;QR=3974;RO=99;RPL=0;RPP=52.9542;RPPR=217.986;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=99;SRP=217.986;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:23,6:23:905:6:242:-13.4271,0,-73.0179 0/1:75:62,13:62:2508:13:518:-24.3869,0,-203.274 0/0:8:8,0:8:316:0:0:0,-2.40824,-28.8027 0/1:10:6,4:6:245:4:158:-11.5897,0,-19.4192 dDocent_Contig_17264 12 . A G 478.367 . AB=0.395833;ABP=7.5342;AC=3;AF=0.375;AN=8;AO=19;CIGAR=1X;DP=51;DPB=51;DPRA=5.33333;EPP=44.2683;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=52.4211;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.421053;PAIREDR=0.806452;PAO=0;PQA=0;PQR=0;PRO=0;QA=747;QR=1232;RO=31;RPL=0;RPP=44.2683;RPPR=70.3259;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:9,5:9:360:5:202:-14.2117,0,-28.5483 0/1:11:6,5:6:223:5:197:-14.5321,0,-17.1126 0/0:3:2,0:2:82:0:0:0,-0.60206,-7.37022 0/1:23:14,9:14:567:9:348:-24.4905,0,-44.4477 dDocent_Contig_17265 38 . G A 93.8999 . AB=0.208333;ABP=20.744;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=90;DPB=90;DPRA=0.698113;EPP=16.0391;EPPR=185.414;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.97619;PAO=0;PQA=0;PQR=0;PRO=0;QA=231;QR=3231;RO=84;RPL=0;RPP=16.0391;RPPR=185.414;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=84;SRP=185.414;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:19,5:19:717:5:196:-10.7875,0,-57.6143 0/0:28:28,0:28:1100:0:0:0,-8.42884,-99.2884 0/0:25:25,0:25:955:0:0:0,-7.52575,-86.2484 0/0:13:12,1:12:459:1:35:0,-0.414761,-38.1544 dDocent_Contig_17266 60 . A G 296.625 . AB=0.588235;ABP=4.1599;AC=1;AF=0.125;AN=8;AO=10;CIGAR=1X;DP=53;DPB=53;DPRA=1.41667;EPP=24.725;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=398;QR=1694;RO=43;RPL=10;RPP=24.725;RPPR=96.3836;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:7,10:7:282:10:398:-31.0604,0,-20.6346 0/0:5:5,0:5:194:0:0:0,-1.50515,-17.8307 0/0:17:17,0:17:663:0:0:0,-5.11751,-59.997 0/0:14:14,0:14:555:0:0:0,-4.21442,-50.2904 dDocent_Contig_17267 66 . C T 76.2956 . AB=0;ABP=0;AC=0;AF=0;AN=8;AO=2;CIGAR=12M1X3M;DP=81;DPB=77.9375;DPRA=1.35714;EPP=7.35324;EPPR=157.185;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=2785;RO=71;RPL=2;RPP=7.35324;RPPR=157.185;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=71;SRP=157.185;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:38:33,2,2:33:1296:2,2:74,82:0,-3.8519,-109.926,-3.11132,-103.758,-109.21 0|0:28:28,0,0:28:1099:0,0:0,0:0,-8.42884,-99.2066,-8.42884,-99.2066,-99.2066 0|0:13:9,4,0:9:350:4,0:129,0:-8.01614,0,-27.9473,-10.7254,-29.1515,-39.5341 0|0:2:1,1,0:1:40:1,0:36,0:-2.99621,0,-3.39362,-3.29724,-3.69465,-6.6122 dDocent_Contig_17268 140 . C A 191.725 . AB=0.354839;ABP=8.68415;AC=1;AF=0.125;AN=8;AO=11;CIGAR=1X;DP=89;DPB=89;DPRA=1.60345;EPP=26.8965;EPPR=172.385;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=329;QR=2133;RO=78;RPL=0;RPP=26.8965;RPPR=172.385;RPR=11;RUN=1;SAF=0;SAP=26.8965;SAR=11;SRF=0;SRP=172.385;SRR=78;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:20,11:20:564:11:329:-20.5704,0,-41.7028 0/0:44:44,0:44:1185:0:0:0,-13.2453,-106.906 0/0:8:8,0:8:220:0:0:0,-2.40824,-20.0725 0/0:6:6,0:6:164:0:0:0,-1.80618,-15.0312 dDocent_Contig_17269 209 . N G 76.8682 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:81:-7.68573,-0.60206,0 dDocent_Contig_17270 24 . A T 109.512 . AB=0.5;ABP=3.0103;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=81;DPB=81;DPRA=2.52174;EPP=13.8677;EPPR=168.042;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=204;QR=3058;RO=76;RPL=0;RPP=13.8677;RPPR=168.042;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=76;SRP=168.042;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:16:16,0:16:654:0:0:0,-4.81648,-59.192 0/0:50:49,1:49:1970:1:41:0,-10.9569,-173.397 0/0:7:7,0:7:275:0:0:0,-2.10721,-25.1173 0/1:8:4,4:4:159:4:163:-12.6502,0,-12.2835 dDocent_Contig_17271 9 . C T 183.598 . AB=0.4375;ABP=3.55317;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=73;DPB=73;DPRA=0.842105;EPP=18.2106;EPPR=146.327;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=269;QR=2525;RO=66;RPL=0;RPP=18.2106;RPPR=146.327;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=66;SRP=146.327;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:9,7:9:343:7:269:-19.7577,0,-26.4096 0/0:17:17,0:17:661:0:0:0,-5.11751,-59.8271 0/0:12:12,0:12:462:0:0:0,-3.61236,-41.9307 0/0:28:28,0:28:1059:0:0:0,-8.42884,-95.6108 dDocent_Contig_17272 65 . C G 217.493 . AB=0.416667;ABP=4.45795;AC=2;AF=0.25;AN=8;AO=10;CIGAR=1X1M1X;DP=40;DPB=40;DPRA=1.5;EPP=24.725;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.5;PAIREDR=0.9;PAO=0;PQA=0;PQR=0;PRO=0;QA=354;QR=1152;RO=30;RPL=10;RPP=24.725;RPPR=68.1545;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:6:6,0:6:234:0:0:0,-1.80618,-21.4311 0|0:10:10,0:10:393:0:0:0,-3.0103,-35.7285 0|1:18:9,9:9:343:9:316:-23.3531,0,-25.8087 0|1:6:5,1:5:182:1:38:-1.99109,0,-14.9261 dDocent_Contig_17273 27 . T G 1591.83 . AB=0.595506;ABP=10.0615;AC=4;AF=0.5;AN=8;AO=53;CIGAR=1X;DP=89;DPB=89;DPRA=0;EPP=118.098;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.603774;PAIREDR=0.694444;PAO=0;PQA=0;PQR=0;PRO=0;QA=2113;QR=1462;RO=36;RPL=0;RPP=118.098;RPPR=81.1833;RPR=53;RUN=1;SAF=53;SAP=118.098;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:6,18:6:245:18:719:-57.81,0,-15.2048 0/1:18:7,11:7:286:11:432:-33.81,0,-20.6963 0/1:34:11,23:11:445:23:921:-72.9588,0,-30.1705 0/1:13:12,1:12:486:1:41:-0.181177,0,-40.1785 dDocent_Contig_17274 15 . G T 33.521 . AB=0.136364;ABP=28.2783;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=51;DPB=51;DPRA=2.27586;EPP=9.52472;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=1901;RO=48;RPL=0;RPP=9.52472;RPPR=107.241;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:19,3:19:767:3:122:-4.74983,0,-62.7285 0/0:12:12,0:12:484:0:0:0,-3.61236,-43.9091 0/0:11:11,0:11:436:0:0:0,-3.31133,-39.5929 0/0:6:6,0:6:214:0:0:0,-1.80618,-19.5985 dDocent_Contig_17275 8 . A G 1203.73 . AB=0.52381;ABP=3.42391;AC=4;AF=0.5;AN=8;AO=44;CIGAR=1X;DP=84;DPB=84;DPRA=0;EPP=98.5551;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.863636;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1685;QR=1521;RO=40;RPL=0;RPP=98.5551;RPPR=89.8692;RPR=44;RUN=1;SAF=44;SAP=98.5551;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:16,6:16:604:6:228:-14.2615,0,-48.0721 0/1:35:16,19:16:607:19:735:-55.9453,0,-44.4305 0/1:18:4,14:4:155:14:528:-42.4409,0,-8.9069 0/1:9:4,5:4:155:5:194:-15.1236,0,-11.6162 dDocent_Contig_17276 20 . C A 405.851 . AB=0.4;ABP=4.31318;AC=4;AF=0.5;AN=8;AO=13;CIGAR=1X;DP=31;DPB=31;DPRA=0.814815;EPP=31.2394;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=526;QR=730;RO=18;RPL=0;RPP=31.2394;RPPR=42.0968;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:7:0,7:0:0:7:281:-25.6604,-2.10721,0 0/0:9:9,0:9:366:0:0:0,-2.70927,-33.3052 0/1:6:4,2:4:162:2:82:-5.9735,0,-13.1608 0/1:9:5,4:5:202:4:163:-12.3492,0,-15.8522 dDocent_Contig_17278 15 . C T 78.039 . AB=0.263158;ABP=12.2676;AC=2;AF=0.25;AN=8;AO=5;CIGAR=1X;DP=30;DPB=30;DPRA=1.72727;EPP=13.8677;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=55.8;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=180;QR=1006;RO=25;RPL=0;RPP=13.8677;RPPR=57.2971;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:10,4:10:404:4:139:-8.5848,0,-32.5038 0/1:5:4,1:4:164:1:41:-2.58942,0,-13.6447 0/0:1:1,0:1:37:0:0:0,-0.30103,-3.69783 0/0:10:10,0:10:401:0:0:0,-3.0103,-36.4473 dDocent_Contig_17280 38 . C G 516.513 . AB=0.333333;ABP=17.4868;AC=4;AF=0.5;AN=8;AO=20;CIGAR=1M1X5M;DP=60;DPB=58.2857;DPRA=0;EPP=46.4397;EPPR=79.0118;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.4;PAIREDR=0.542857;PAO=0;PQA=0;PQR=0;PRO=0;QA=798;QR=1375;RO=35;RPL=0;RPP=46.4397;RPPR=79.0118;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:15:8,1,6:8:300:1,6:38,232:-16.6517,-15.9443,-40.2046,0,-21.4464,-22.7573 0|1:5:0,1,4:0:0:1,4:41,161:-17.0569,-13.6714,-13.3703,-3.79354,0,-2.58942 0|1:17:9,2,6:9:359:2,6:78,244:-17.4296,-13.7312,-42.6905,0,-23.163,-27.767 0|1:23:18,0,4:18:716:0,4:0,161:-7.88397,-13.3025,-72.2592,0,-58.9893,-57.7851 dDocent_Contig_17282 9 . C A 736.066 . AB=0.344828;ABP=21.2057;AC=4;AF=0.5;AN=8;AO=30;CIGAR=3M1X2M1X5M1X;DP=87;DPB=88;DPRA=0;EPP=51.9408;EPPR=85.5263;GTI=0;LEN=1;MEANALT=2.25;MQM=56.2;MQMR=60;NS=4;NUMALT=4;ODDS=0;PAIRED=0.566667;PAIREDR=0.815789;PAO=0;PQA=0;PQR=0;PRO=0;QA=1140;QR=1486;RO=38;RPL=0;RPP=68.1545;RPPR=85.5263;RPR=30;RUN=1;SAF=28;SAP=51.9408;SAR=2;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:18:7,5,0,6,0:7:272:5,0,6,0:171,0,229,0:-16.6995,-5.1363,-25.9864,-18.8067,-27.4915,-41.1686,0,-8.71181,-22.381,-20.5748,-18.8067,-27.4915,-41.1686,-22.381,-41.1686 0|1:23:6,0,3,14,0:6:239:0,3,14,0:0,120,526,0:-40.1716,-41.9778,-61.6657,-32.0868,-51.7774,-50.8743,0,-19.6802,-9.79439,-15.4658,-41.9778,-61.6657,-51.7774,-19.6802,-61.6657 0|1:23:7,6,0,7,3:7:277:6,0,7,3:233,0,269,123:-19.9647,-2.94819,-23.9415,-22.0719,-25.7477,-44.8715,0,-3.67743,-22.7981,-20.6909,-11.9152,-15.592,-34.7165,-12.6426,-33.8135 0|1:23:18,2,0,3,0:18:698:2,0,3,0:58,0,116,0:-4.16788,-5.02658,-61.7705,-9.58641,-62.3725,-66.9628,0,-52.8447,-57.4337,-56.5306,-9.58641,-62.3725,-66.9628,-57.4337,-66.9628 dDocent_Contig_17283 98 . N T 411.023 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=13;CIGAR=1X;DP=13;DPB=13;DPRA=0;EPP=31.2394;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=13.6161;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=453;QR=0;RO=0;RPL=13;RPP=31.2394;RPPR=0;RPR=0;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:13:0,13:0:0:13:453:-41.1023,-3.91339,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_17284 7 . A G 466.412 . AB=0.435185;ABP=6.95112;AC=2;AF=0.25;AN=8;AO=49;CIGAR=1X;DP=129;DPB=129;DPRA=8.26667;EPP=109.412;EPPR=170.214;GTI=0;LEN=1;MEANALT=2;MQM=20.7143;MQMR=58.5974;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.74026;PAO=0;PQA=0;PQR=0;PRO=0;QA=1570;QR=2952;RO=77;RPL=0;RPP=109.412;RPPR=170.214;RPR=49;RUN=1;SAF=49;SAP=109.412;SAR=0;SRF=77;SRP=170.214;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:62:35,26:35:1332:26:806:-25.3046,0,-101.622 0/1:46:23,21:23:888:21:692:-24.7345,0,-66.6222 0/0:16:14,2:14:537:2:72:0,-1.50944,-45.3677 0/0:5:5,0:5:195:0:0:0,-1.50515,-17.8603 dDocent_Contig_17286 15 . C T 9271.78 . AB=0.275997;ABP=560.444;AC=4;AF=0.5;AN=8;AO=353;CIGAR=1X5M1X;DP=1279;DPB=1279;DPRA=0;EPP=769.54;EPPR=1499.15;GTI=0;LEN=1;MEANALT=10.5;MQM=59.4703;MQMR=51.9448;NS=4;NUMALT=3;ODDS=0;PAIRED=0.135977;PAIREDR=0.693759;PAO=0;PQA=0;PQR=0;PRO=0;QA=13896;QR=27198;RO=689;RPL=0;RPP=769.54;RPPR=1499.15;RPR=353;RUN=1;SAF=353;SAP=769.54;SAR=0;SRF=689;SRP=1499.15;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:409:225,30,110,14:225:8900:30,110,14:1206,4311,570:-286.636,-254.978,-917.632,0,-572.298,-638.574,-307.372,-879.667,-624.692,-974.841 0|1:332:179,6,91,26:179:7019:6,91,26:235,3572,1036:-239.288,-273.851,-784.238,0,-492.861,-484.789,-208.024,-700.894,-427.03,-712.389 0|1:368:203,21,89,21:203:8034:21,89,21:841,3514,843:-227.676,-219.525,-800.576,0,-518.115,-560.584,-219.354,-737.466,-517.943,-800.404 0|1:170:82,2,63,10:82:3245:2,63,10:80,2499,395:-180.976,-199.07,-431.517,0,-226.46,-214.086,-173.329,-399.786,-200.715,-403.366 dDocent_Contig_17287 107 . N T 65.5375 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=69;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:69:-6.55266,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_17289 13 . C T 915.282 . AB=0.4125;ABP=8.33041;AC=4;AF=0.5;AN=8;AO=33;CIGAR=1X;DP=80;DPB=80;DPRA=0;EPP=74.6689;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1330;QR=1874;RO=47;RPL=0;RPP=74.6689;RPPR=105.07;RPR=33;RUN=1;SAF=33;SAP=74.6689;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:23,2:23:931:2:81:-0.159984,0,-76.5636 0/1:21:8,13:8:295:13:523:-41.0944,0,-20.5644 0/1:22:9,13:9:364:13:526:-41.0641,0,-26.5017 0/1:12:7,5:7:284:5:200:-14.7661,0,-22.3216 dDocent_Contig_17290 98 . N A 91.4472 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=98;QR=0;RO=0;RPL=3;RPP=9.52472;RPPR=0;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:98:-9.14417,-0.90309,0 dDocent_Contig_17291 9 . C T 3275.81 . AB=0.756944;ABP=85.5866;AC=4;AF=0.5;AN=8;AO=109;CIGAR=1X;DP=144;DPB=144;DPRA=0;EPP=239.701;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.59633;PAIREDR=0.8;PAO=0;PQA=0;PQR=0;PRO=0;QA=4190;QR=1311;RO=35;RPL=0;RPP=239.701;RPPR=79.0118;RPR=109;RUN=1;SAF=109;SAP=239.701;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:10,17:10:386:17:652:-50.8883,0,-26.9692 0/1:54:10,44:10:360:44:1688:-135.923,0,-16.4769 0/1:48:6,42:6:228:42:1619:-131.526,0,-6.43514 0/1:15:9,6:9:337:6:231:-16.6425,0,-26.1649 dDocent_Contig_17292 107 . N T 330.316 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=10;CIGAR=1X;DP=10;DPB=10;DPRA=0;EPP=24.725;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=0.9;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=345;QR=0;RO=0;RPL=0;RPP=24.725;RPPR=0;RPR=10;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1:0,1:0:0:1:35:-3.49863,-0.30103,0 1/1:3:0,3:0:0:3:105:-9.79616,-0.90309,0 1/1:1:0,1:0:0:1:35:-3.49863,-0.30103,0 1/1:5:0,5:0:0:5:170:-15.6348,-1.50515,0 dDocent_Contig_17293 39 . A G 799.477 . AB=0.47541;ABP=3.33068;AC=4;AF=0.5;AN=8;AO=29;CIGAR=1X;DP=61;DPB=61;DPRA=0;EPP=65.983;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=0.965517;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1157;QR=1292;RO=32;RPL=0;RPP=65.983;RPPR=72.4974;RPR=29;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:20,7:20:815:7:271:-16.6214,0,-65.5364 0/1:12:6,6:6:234:6:245:-18.8171,0,-17.8164 0/1:15:5,10:5:202:10:397:-31.5687,0,-14.046 0/1:7:1,6:1:41:6:244:-20.2314,0,-1.98736 dDocent_Contig_17294 80 . C T 84.3986 . AB=0.238095;ABP=15.5221;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=64;DPB=64;DPRA=1.46512;EPP=13.8677;EPPR=131.127;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.932203;PAO=0;PQA=0;PQR=0;PRO=0;QA=179;QR=2020;RO=59;RPL=5;RPP=13.8677;RPPR=131.127;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=59;SRP=131.127;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:19:19,0:19:663:0:0:0,-5.71957,-59.9959 0/0:20:20,0:20:664:0:0:0,-6.0206,-60.0722 0/1:21:16,5:16:553:5:179:-10.1388,0,-43.7756 0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9449 dDocent_Contig_17296 35 . T G 998.69 . AB=0.509804;ABP=3.05288;AC=5;AF=0.625;AN=8;AO=33;CIGAR=1X;DP=58;DPB=58;DPRA=0;EPP=74.6689;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.969697;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1321;QR=1005;RO=25;RPL=0;RPP=74.6689;RPPR=57.2971;RPR=33;RUN=1;SAF=33;SAP=74.6689;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:13,4:13:527:4:162:-9.84945,0,-42.6596 0/1:27:11,16:11:439:16:647:-50.4358,0,-31.7372 1/1:7:0,7:0:0:7:281:-25.6626,-2.10721,0 0/1:7:1,6:1:39:6:231:-19.0464,0,-1.78935 dDocent_Contig_17298 57 . T C 93.8043 . AB=0.307692;ABP=7.18621;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=40;DPB=40;DPRA=1.44444;EPP=11.6962;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.944444;PAO=0;PQA=0;PQR=0;PRO=0;QA=159;QR=1381;RO=36;RPL=4;RPP=11.6962;RPPR=81.1833;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:9,4:9:345:4:159:-10.7784,0,-27.4914 0/0:13:13,0:13:500:0:0:0,-3.91339,-45.3424 0/0:7:7,0:7:260:0:0:0,-2.10721,-23.7513 0/0:7:7,0:7:276:0:0:0,-2.10721,-25.2077 dDocent_Contig_17299 21 . G C 134.261 . AB=0.2;ABP=30.3709;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=91;DPB=91;DPRA=1.875;EPP=18.2106;EPPR=185.414;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.988095;PAO=0;PQA=0;PQR=0;PRO=0;QA=281;QR=3318;RO=84;RPL=0;RPP=18.2106;RPPR=185.414;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=84;SRP=185.414;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:38:38,0:38:1506:0:0:0,-11.4391,-135.78 0/1:35:28,7:28:1082:7:281:-15.125,0,-87.1302 0/0:8:8,0:8:326:0:0:0,-2.40824,-29.7099 0/0:10:10,0:10:404:0:0:0,-3.0103,-36.7198 dDocent_Contig_17300 23 . A G 1083.92 . AB=0.4;ABP=11.2619;AC=4;AF=0.5;AN=8;AO=38;CIGAR=3M1X21M;DP=95;DPB=95.76;DPRA=0;EPP=85.5263;EPPR=89.8692;GTI=0;LEN=1;MEANALT=2.75;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1505;QR=1562;RO=40;RPL=0;RPP=85.5263;RPPR=89.8692;RPR=38;RUN=1;SAF=38;SAP=85.5263;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:24:16,0,0,7:16:620:0,0,7:0,0,280:-18.2633,-23.0798,-74.0074,-23.0798,-74.0074,-74.0074,0,-50.9412,-50.9412,-48.834 0|1:29:14,1,2,11:14:548:1,2,11:40,78,447:-32.6603,-33.58,-78.3314,-30.4658,-72.2219,-74.915,0,-41.7587,-38.6434,-41.7428 0|1:35:10,10,0,14:10:394:10,0,14:391,0,535:-40.8891,-11.7443,-41.1618,-43.8994,-44.1721,-76.3201,0,-0.274272,-32.4301,-28.2156 0|1:7:0,0,1,6:0:0:0,1,6:0,41,243:-23.8262,-23.8262,-23.8262,-20.4414,-20.4414,-20.1404,-3.79354,-3.79354,0,-1.98736 dDocent_Contig_17301 79 . C A 83.5275 . AB=0.444444;ABP=3.25157;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=34;DPB=34;DPRA=1.08;EPP=11.6962;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=138;QR=1038;RO=30;RPL=4;RPP=11.6962;RPPR=68.1545;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:10:10,0:10:348:0:0:0,-3.0103,-31.6557 0/0:14:14,0:14:489:0:0:0,-4.21442,-44.3419 0/1:9:5,4:5:168:4:138:-10.0511,0,-12.7418 0/0:1:1,0:1:33:0:0:0,-0.30103,-3.29913 dDocent_Contig_17302 24 . G A 3160.93 . AB=0.711268;ABP=58.0617;AC=4;AF=0.5;AN=8;AO=101;CIGAR=1X;DP=142;DPB=142;DPRA=0;EPP=222.329;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4039;QR=1592;RO=41;RPL=0;RPP=222.329;RPPR=92.0407;RPR=101;RUN=1;SAF=101;SAP=222.329;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:58:5,53:5:195:53:2103:-171.992,0,-0.463991 0/1:47:16,31:16:603:31:1244:-98.0842,0,-40.449 0/1:24:17,7:17:675:7:283:-18.6183,0,-53.8576 0/1:13:3,10:3:119:10:409:-33.2572,0,-7.18162 dDocent_Contig_17303 209 . N G 152.006 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=157;QR=0;RO=0;RPL=4;RPP=11.6962;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:82:-7.77968,-0.60206,0 1/1:2:0,2:0:0:2:75:-7.1188,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_17304 70 . G T 177.322 . AB=0.347826;ABP=7.63648;AC=3;AF=0.5;AN=6;AO=8;CIGAR=1X;DP=23;DPB=23;DPRA=0;EPP=20.3821;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=318;QR=602;RO=15;RPL=8;RPP=20.3821;RPPR=35.5824;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=15;SRP=35.5824;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:3:1,2:1:40:2:79:-6.59454,0,-3.09259 0/1:12:7,5:7:283:5:198:-14.5854,0,-22.2312 0/1:8:7,1:7:279:1:41:-1.68633,0,-23.0731 ./.:.:.:.:.:.:.:. dDocent_Contig_17305 13 . T G 555.942 . AB=0.22314;ABP=83.5701;AC=4;AF=0.5;AN=8;AO=27;CIGAR=1X;DP=121;DPB=121;DPRA=0;EPP=61.6401;EPPR=207.129;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=54.234;NS=4;NUMALT=1;ODDS=0;PAIRED=0.925926;PAIREDR=0.702128;PAO=0;PQA=0;PQR=0;PRO=0;QA=1088;QR=3610;RO=94;RPL=0;RPP=61.6401;RPPR=207.129;RPR=27;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=94;SRP=207.129;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:24,5:24:934:5:201:-9.74065,0,-72.1383 0/1:49:39,10:39:1468:10:404:-21.9694,0,-117.632 0/1:31:23,8:23:891:8:319:-19.7446,0,-67.696 0/1:12:8,4:8:317:4:164:-11.5375,0,-24.539 dDocent_Contig_17306 98 . N T 297.134 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=9;CIGAR=1X;DP=9;DPB=9;DPRA=0;EPP=22.5536;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=312;QR=0;RO=0;RPL=9;RPP=22.5536;RPPR=0;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:5:0,5:0:0:5:174:-16.002,-1.50515,0 1/1:3:0,3:0:0:3:103:-9.61002,-0.90309,0 1/1:1:0,1:0:0:1:35:-3.49863,-0.30103,0 ./.:.:.:.:.:.:.:. dDocent_Contig_17308 201 . C T 71.4999 . AB=0.6;ABP=3.44459;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=40;DPB=40;DPRA=0.428571;EPP=9.52472;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.972973;PAO=0;PQA=0;PQR=0;PRO=0;QA=111;QR=1352;RO=37;RPL=3;RPP=9.52472;RPPR=83.3548;RPR=0;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=83.3548;SRR=37;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:12:12,0:12:440:0:0:0,-3.61236,-39.9445 0/0:20:20,0:20:729:0:0:0,-6.0206,-65.9377 0/0:3:3,0:3:111:0:0:0,-0.90309,-10.3539 0/1:5:2,3:2:72:3:111:-8.84877,0,-5.33149 dDocent_Contig_17309 11 . T C 99.1704 . AB=0.444444;ABP=3.25157;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=56;DPB=56;DPRA=1.8;EPP=13.8677;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=0.8;PAIREDR=0.980392;PAO=0;PQA=0;PQR=0;PRO=0;QA=192;QR=2058;RO=51;RPL=0;RPP=13.8677;RPPR=113.755;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:7:7,0:7:282:0:0:0,-2.10721,-25.7515 0/1:9:5,4:5:198:4:155:-11.616,0,-15.487 0/0:27:26,1:26:1053:1:37:0,-4.42998,-91.3603 0/0:13:13,0:13:525:0:0:0,-3.91339,-47.5959 dDocent_Contig_17311 107 . N G 143.611 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=6;CIGAR=1X;DP=6;DPB=6;DPRA=0;EPP=16.0391;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=151;QR=0;RO=0;RPL=0;RPP=16.0391;RPPR=0;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1:0,1:0:0:1:21:-2.09995,-0.30103,0 1/1:5:0,5:0:0:5:130:-11.9573,-1.50515,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_17312 18 . A T 69.3021 . AB=0.125;ABP=81.1833;AC=1;AF=0.125;AN=8;AO=10;CIGAR=1X;DP=168;DPB=168;DPRA=2.23077;EPP=24.725;EPPR=346.103;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.759494;PAO=0;PQA=0;PQR=0;PRO=0;QA=384;QR=6224;RO=158;RPL=0;RPP=24.725;RPPR=346.103;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=158;SRP=346.103;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:52:50,2:50:1966:2:78:0,-8.25026,-169.748 0/1:64:56,8:56:2234:8:306:-8.62918,0,-181.972 0/0:40:40,0:40:1559:0:0:0,-12.0412,-140.561 0/0:12:12,0:12:465:0:0:0,-3.61236,-42.1946 dDocent_Contig_17313 75 . G A 328.464 . AB=0.405405;ABP=5.88603;AC=2;AF=0.25;AN=8;AO=16;CIGAR=1X;DP=54;DPB=54;DPRA=5.66667;EPP=37.7539;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=555;QR=1249;RO=38;RPL=16;RPP=37.7539;RPPR=85.5263;RPR=0;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:6,9:6:193:9:315:-24.1731,0,-13.1717 0/0:14:13,1:13:427:1:36:0,-0.616145,-35.1482 0/1:22:16,6:16:535:6:204:-12.0709,0,-41.8463 0/0:3:3,0:3:94:0:0:0,-0.90309,-8.77114 dDocent_Contig_17314 93 . T A 63.6718 . AB=0.171429;ABP=35.8306;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=67;DPB=67;DPRA=3.1875;EPP=18.2106;EPPR=133.299;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=238;QR=2066;RO=60;RPL=7;RPP=18.2106;RPPR=133.299;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:11,0:11:379:0:0:0,-3.31133,-34.4422 0/1:35:29,6:29:1002:6:203:-8.06607,0,-79.9565 0/0:16:15,1:15:522:1:35:0,-1.31785,-43.8115 0/0:5:5,0:5:163:0:0:0,-1.50515,-14.9913 dDocent_Contig_17315 1 . N G 190.814 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=5;CIGAR=1X;DP=5;DPB=5;DPRA=0;EPP=13.8677;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0.8;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=200;QR=0;RO=0;RPL=0;RPP=13.8677;RPPR=0;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1:0,1:0:0:1:40:-3.99568,-0.30103,0 1/1:4:0,4:0:0:4:160:-14.7834,-1.20412,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_17316 61 . T C 499.619 . AB=0.355932;ABP=13.6468;AC=4;AF=0.5;AN=8;AO=21;CIGAR=1X;DP=59;DPB=59;DPRA=0;EPP=48.6112;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.789474;PAO=0;PQA=0;PQR=0;PRO=0;QA=812;QR=1433;RO=38;RPL=21;RPP=48.6112;RPPR=6.66752;RPR=0;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=23;SRP=6.66752;SRR=15;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:18,2:18:669:2:79:-1.47703,0,-54.5167 0/1:6:3,3:3:121:3:117:-9.10403,0,-9.47402 0/1:14:5,9:5:189:9:340:-26.735,0,-13.1596 0/1:19:12,7:12:454:7:276:-19.4895,0,-35.4837 dDocent_Contig_17317 104 . N C 66.4848 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=4X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=70;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. 1|1:2:0,2:0:0:2:70:-6.6474,-0.60206,0 .:.:.:.:.:.:.:. dDocent_Contig_17318 22 . T C 58.5245 . AB=0.230769;ABP=11.1951;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=37;DPB=37;DPRA=1.625;EPP=9.52472;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=123;QR=1335;RO=34;RPL=0;RPP=9.52472;RPPR=76.8404;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:7:7,0:7:284:0:0:0,-2.10721,-25.934 0/1:13:10,3:10:390:3:123:-7.5514,0,-31.5401 0/0:11:11,0:11:418:0:0:0,-3.31133,-37.9506 0/0:6:6,0:6:243:0:0:0,-1.80618,-22.2482 dDocent_Contig_17319 10 . T C 1220.27 . AB=0.5;ABP=3.0103;AC=4;AF=0.5;AN=8;AO=42;CIGAR=1X;DP=84;DPB=84;DPRA=0;EPP=94.2121;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1703;QR=1681;RO=42;RPL=0;RPP=94.2121;RPPR=94.2121;RPR=42;RUN=1;SAF=42;SAP=94.2121;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:14,6:14:565:6:245:-16.4089,0,-45.1717 0/1:28:12,16:12:485:16:646:-50.0433,0,-35.5726 0/1:20:14,6:14:549:6:241:-16.0457,0,-43.7259 0/1:16:2,14:2:82:14:571:-46.9152,0,-2.9632 dDocent_Contig_17320 17 . T C 105.225 . AB=0.142857;ABP=72.8076;AC=3;AF=0.375;AN=8;AO=9;CIGAR=1X;DP=80;DPB=80;DPRA=1.23529;EPP=22.5536;EPPR=155.013;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=365;QR=2697;RO=70;RPL=0;RPP=22.5536;RPPR=155.013;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=70;SRP=155.013;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:23,4:23:882:4:161:-6.74709,0,-71.5662 0/1:22:20,2:20:779:2:82:-1.15702,0,-63.8123 0/1:14:11,3:11:428:3:122:-7.15807,0,-34.6598 0/0:17:16,0:16:608:0:0:0,-4.81648,-54.9311 dDocent_Contig_17321 8 . A T 886.338 . AB=0.210526;ABP=16.8392;AC=0;AF=0;AN=8;AO=4;CIGAR=1X3M1X3M;DP=72;DPB=71.25;DPRA=0;EPP=11.6962;EPPR=52.9542;GTI=0;LEN=1;MEANALT=2;MQM=57;MQMR=58.7391;NS=4;NUMALT=4;ODDS=0;PAIRED=0;PAIREDR=0.956522;PAO=0;PQA=0;PQR=0;PRO=0;QA=156;QR=900;RO=23;RPL=0;RPP=11.6962;RPPR=52.9542;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:19:10,4,0,0,5:10:390:4,0,0,5:156,0,0,205:-13.9213,-4.1299,-34.9706,-16.9316,-36.1747,-48.9839,-16.9316,-36.1747,-48.9839,-48.9839,0,-19.2477,-32.0582,-32.0582,-30.5531 0|0:22:6,0,2,5,9:6:231:0,2,5,9:0,69,199,360:-27.3597,-29.1659,-48.1313,-23.702,-42.6654,-42.0633,-13.0347,-32.001,-26.5364,-30.4958,0,-18.9696,-13.5066,-2.83382,-16.2604 0|0:25:7,0,0,7,11:7:279:0,0,7,11:0,0,264,444:-34.4549,-36.5621,-58.6843,-36.5621,-58.6843,-58.6843,-15.2201,-37.3371,-37.3371,-35.2298,0,-22.1301,-22.1301,-0.78246,-18.8187 0|0:6:0,0,0,3,3:0:0:0,0,3,3:0,0,120,123:-20.2782,-20.2782,-20.2782,-20.2782,-20.2782,-20.2782,-10.5617,-10.5617,-10.5617,-9.65861,-10.118,-10.118,-10.118,0,-9.21494 dDocent_Contig_17323 103 . N A 74.0456 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=5X1M2D2M;DP=2;DPB=1.6;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=78;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. 1|1:2:0,2:0:0:2:78:-7.40347,-0.60206,0 .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. dDocent_Contig_17324 34 . C G 4545.42 . AB=0.0652174;ABP=78.5398;AC=0;AF=0;AN=8;AO=3;CIGAR=1X2M1X1M1X1M1X1M;DP=240;DPB=240;DPRA=0;EPP=9.52472;EPPR=76.8404;GTI=0;LEN=1;MEANALT=7;MQM=60;MQMR=60;NS=4;NUMALT=6;ODDS=0;PAIRED=0;PAIREDR=0.794118;PAO=0;PQA=0;PQR=0;PRO=0;QA=110;QR=1306;RO=34;RPL=0;RPP=9.52472;RPPR=76.8404;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:112:5,0,0,3,51,7,37:5:197:0,0,3,51,7,37:0,0,116,1961,278,1495:-266.512,-268.017,-284.224,-268.017,-284.224,-284.224,-258.489,-274.697,-274.697,-273.794,-107.046,-123.252,-123.252,-113.726,-107.9,-245.13,-261.337,-261.337,-251.81,-100.366,-259.23,-144.762,-160.97,-160.97,-151.442,0,-138.082,-149.832 0|0:70:19,0,4,0,37,0,10:19:713:0,4,0,37,0,10:0,159,0,1430,0,407:-111.715,-117.435,-175.824,-104.343,-162.732,-161.528,-117.435,-175.824,-162.732,-175.824,0,-58.3771,-45.2846,-58.3771,-47.239,-117.435,-175.824,-162.732,-175.824,-58.3771,-175.824,-83.8572,-142.247,-129.155,-142.247,-24.7949,-142.247,-139.237 0|0:46:8,3,1,0,17,2,13:8:316:3,1,0,17,2,13:110,37,0,656,82,517:-68.024,-61.4434,-86.5444,-67.4057,-84.4209,-93.1089,-70.4323,-87.4475,-93.41,-96.4366,-16.5617,-33.5787,-39.5404,-42.5668,-37.4493,-63.6628,-80.6783,-86.6408,-89.6674,-35.7971,-89.0654,-27.8667,-44.8841,-50.8464,-53.873,0,-47.1032,-49.9596 0|0:12:2,0,1,2,5,0,2:2:80:0,1,2,5,0,2:0,39,80,196,0,80:-15.5132,-16.1153,-22.7062,-12.9099,-19.5009,-19.1999,-9.52385,-16.1153,-12.9099,-15.5132,0,-6.59073,-3.38627,-3.47436e-08,-5.08558,-16.1153,-22.7062,-19.5009,-16.1153,-6.59073,-22.7062,-9.52405,-16.1155,-12.9101,-9.52405,-0.000208563,-16.1155,-15.5134 dDocent_Contig_17326 182 . C A 266.298 . AB=0.37931;ABP=6.67934;AC=3;AF=0.375;AN=8;AO=11;CIGAR=1X;DP=30;DPB=30;DPRA=9.66667;EPP=26.8965;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=439;QR=767;RO=19;RPL=11;RPP=26.8965;RPPR=44.2683;RPR=0;RUN=1;SAF=0;SAP=26.8965;SAR=11;SRF=0;SRP=44.2683;SRR=19;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:9,3:9:368:3:122:-7.76013,0,-29.873 0/1:7:1,6:1:41:6:242:-20.0501,0,-1.98736 0/1:10:8,2:8:324:2:75:-4.10929,0,-26.5185 0/0:1:1,0:1:34:0:0:0,-0.30103,-3.39891 dDocent_Contig_17328 13 . C G 200.252 . AB=0.2;ABP=18.6449;AC=1;AF=0.125;AN=8;AO=7;CIGAR=2M1X1M1X1M1I4M;DP=54;DPB=54.5;DPRA=0;EPP=18.2106;EPPR=68.1545;GTI=0;LEN=1;MEANALT=3;MQM=13;MQMR=60;NS=4;NUMALT=5;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=91;QR=1173;RO=30;RPL=0;RPP=18.2106;RPPR=68.1545;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:14:9,0,3,0,0,2:9:347:0,3,0,0,2:0,114,0,0,79:-6.63316,-9.34243,-37.8375,0,-28.4914,-27.5884,-9.34243,-37.8375,-28.4914,-37.8375,-9.34243,-37.8375,-28.4914,-37.8375,-37.8375,-2.9598,-31.4576,-22.1116,-31.4576,-31.4576,-30.8555 0|0:20:17,0,0,0,3,0:17:666:0,0,0,3,0:0,0,0,39,0:0,-5.11751,-60.1279,-5.11751,-60.1279,-60.1279,-5.11751,-60.1279,-60.1279,-60.1279,-3.19262,-58.3476,-58.3476,-58.3476,-57.4445,-5.11751,-60.1279,-60.1279,-60.1279,-58.3476,-60.1279 0|0:10:1,5,1,0,1,0:1:40:5,1,0,1,0:193,41,0,13,0:-15.747,-0.0914714,-1.92229,-12.6503,0,-15.6569,-16.048,-3.42744,-15.9579,-19.3529,-15.465,-2.85323,-15.3748,-18.7683,-18.4672,-16.048,-3.42744,-15.9579,-19.3529,-18.7683,-19.3529 0|1:10:3,0,1,3,3,0:3:120:0,1,3,3,0:0,39,60,39,0:-2.78561,-3.6887,-13.6423,-0.446522,-10.4198,-10.1187,0,-9.98227,-6.75649,-9.07918,-1.91796,-11.878,-8.65716,-8.28528,-10.9749,-3.6887,-13.6423,-10.4198,-9.98227,-11.878,-13.6423 dDocent_Contig_17329 110 . A G 174.801 . AB=0.307692;ABP=7.18621;AC=3;AF=0.5;AN=6;AO=7;CIGAR=1X;DP=29;DPB=29;DPRA=0.615385;EPP=18.2106;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=245;QR=673;RO=21;RPL=0;RPP=18.2106;RPPR=48.6112;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=48.6112;SRR=21;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:13:13,0:13:418:0:0:0,-3.91339,-37.9294 0/1:13:8,4:8:255:4:140:-9.2066,0,-19.5517 1/1:3:0,3:0:0:3:105:-9.79616,-0.90309,0 ./.:.:.:.:.:.:.:. dDocent_Contig_17330 15 . A T 209.379 . AB=0.461538;ABP=3.51141;AC=2;AF=0.25;AN=8;AO=23;CIGAR=2X1M1D3M2I2M2X;DP=105;DPB=107.091;DPRA=0;EPP=52.9542;EPPR=181.071;GTI=0;LEN=1;MEANALT=1;MQM=22.6957;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=0.0434783;PAIREDR=0.963415;PAO=0;PQA=0;PQR=0;PRO=0;QA=906;QR=3222;RO=82;RPL=0;RPP=52.9542;RPPR=181.071;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=82;SRP=181.071;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:18:11,7:11:433:7:275:-9.7164,0,-33.9045 0|0:36:34,2:34:1352:2:80:0,-6.85732,-117.968 0|0:30:27,3:27:1057:3:114:0,-3.18063,-89.576 0|1:21:10,11:10:380:11:437:-14.6194,0,-28.2274 dDocent_Contig_17331 47 . A T 56.1285 . AB=0.147059;ABP=39.7976;AC=2;AF=0.25;AN=8;AO=5;CIGAR=1X;DP=63;DPB=63;DPRA=1.17241;EPP=13.8677;EPPR=128.956;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=205;QR=2274;RO=58;RPL=0;RPP=13.8677;RPPR=128.956;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:21:21,0:21:823:0:0:0,-6.32163,-74.3817 0/1:25:22,3:22:855:3:123:-3.93904,0,-69.7343 0/0:8:8,0:8:314:0:0:0,-2.40824,-28.6229 0/1:9:7,2:7:282:2:82:-5.07041,0,-23.0437 dDocent_Contig_17332 39 . A T 196.222 . AB=0.257143;ABP=20.9405;AC=1;AF=0.125;AN=8;AO=10;CIGAR=2X;DP=110;DPB=110;DPRA=0.896552;EPP=24.725;EPPR=220.158;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=390;QR=3938;RO=100;RPL=0;RPP=24.725;RPPR=220.158;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=100;SRP=220.158;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:47:47,0:47:1854:0:0:0,-14.1484,-167.083 0|1:35:26,9:26:1024:9:350:-21.3211,0,-81.9146 0|0:17:16,1:16:631:1:40:0,-1.12183,-53.1288 0|0:11:11,0:11:429:0:0:0,-3.31133,-38.9624 dDocent_Contig_17333 16 . C T 49.5578 . AB=0.130435;ABP=57.5803;AC=2;AF=0.25;AN=8;AO=7;CIGAR=1X;DP=82;DPB=82;DPRA=6.5;EPP=18.2106;EPPR=165.871;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=0.428571;PAIREDR=0.706667;PAO=0;PQA=0;PQR=0;PRO=0;QA=279;QR=3022;RO=75;RPL=0;RPP=18.2106;RPPR=165.871;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=75;SRP=165.871;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:17,3:17:694:3:122:-5.35189,0,-56.767 0/0:32:31,1:31:1252:1:41:0,-5.53839,-108.851 0/1:26:23,3:23:913:3:116:-2.99076,0,-74.6436 0/0:4:4,0:4:163:0:0:0,-1.20412,-15.0584 dDocent_Contig_17335 37 . A T 354.152 . AB=0.288462;ABP=23.2217;AC=2;AF=0.25;AN=8;AO=16;CIGAR=1X;DP=101;DPB=101;DPRA=0.686869;EPP=37.7539;EPPR=187.585;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=638;QR=3379;RO=85;RPL=0;RPP=37.7539;RPPR=187.585;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=85;SRP=187.585;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:33:33,0:33:1314:0:0:0,-9.93399,-118.519 0/1:21:13,8:13:515:8:317:-22.5735,0,-40.374 0/1:31:24,7:24:951:7:280:-16.2394,0,-76.5602 0/0:16:15,1:15:599:1:41:0,-0.721913,-50.1525 dDocent_Contig_17336 11 . G T 509.407 . AB=0.156398;ABP=219.386;AC=3;AF=0.375;AN=8;AO=34;CIGAR=1X;DP=231;DPB=231;DPRA=0;EPP=76.8404;EPPR=430.79;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1361;QR=7812;RO=197;RPL=0;RPP=76.8404;RPPR=430.79;RPR=34;RUN=1;SAF=34;SAP=76.8404;SAR=0;SRF=197;SRP=430.79;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:67:59,8:59:2355:8:313:-8.36027,0,-191.939 0/1:97:78,19:78:3104:19:766:-40.0604,0,-250.239 0/1:47:41,6:41:1596:6:241:-7.91789,0,-129.717 0/0:20:19,1:19:757:1:41:0,-1.92603,-64.3552 dDocent_Contig_17337 97 . G T 325.013 . AB=0.576923;ABP=4.34659;AC=2;AF=0.25;AN=8;AO=15;CIGAR=1X;DP=49;DPB=49;DPRA=1.13043;EPP=35.5824;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=479;QR=1138;RO=34;RPL=15;RPP=35.5824;RPPR=76.8404;RPR=0;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:13:13,0:13:421:0:0:0,-3.91339,-38.2027 0/0:10:10,0:10:337:0:0:0,-3.0103,-30.6569 0/1:22:9,13:9:311:13:418:-31.3092,0,-21.7027 0/1:4:2,2:2:69:2:61:-4.58964,0,-5.34854 dDocent_Contig_17339 27 . T A 287.37 . AB=0.222222;ABP=51.2652;AC=3;AF=0.375;AN=8;AO=16;CIGAR=1X;DP=96;DPB=96;DPRA=1;EPP=37.7539;EPPR=176.728;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.975;PAO=0;PQA=0;PQR=0;PRO=0;QA=608;QR=3027;RO=80;RPL=0;RPP=37.7539;RPPR=176.728;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=80;SRP=176.728;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:24:24,0:24:915:0:0:0,-7.22472,-82.6625 0/1:30:23,7:23:862:7:277:-16.2683,0,-68.8603 0/1:30:24,6:24:901:6:212:-10.3845,0,-72.3664 0/1:12:9,3:9:349:3:119:-7.48214,0,-28.1582 dDocent_Contig_17340 16 . G A 33.5264 . AB=0.142857;ABP=26.2761;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=41;DPB=41;DPRA=3.15;EPP=9.52472;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=1530;RO=38;RPL=0;RPP=9.52472;RPPR=85.5263;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:10:10,0:10:403:0:0:0,-3.0103,-36.629 0/1:21:18,3:18:723:3:122:-5.05086,0,-59.0749 0/0:9:9,0:9:363:0:0:0,-2.70927,-33.0338 0/0:1:1,0:1:41:0:0:0,-0.30103,-4.09457 dDocent_Contig_17341 111 . C T 131.058 . AB=0.4375;ABP=3.55317;AC=2;AF=0.25;AN=8;AO=9;CIGAR=1X;DP=47;DPB=47;DPRA=0;EPP=22.5536;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=39.2222;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=295;QR=1266;RO=38;RPL=0;RPP=22.5536;RPPR=85.5263;RPR=9;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=85.5263;SRR=38;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:10,1:10:337:1:27:0,-0.708479,-28.0538 0/0:20:19,1:19:619:1:33:0,-2.79957,-52.7972 0/1:12:6,6:6:205:6:202:-14.3931,0,-15.1729 0/1:4:3,1:3:105:1:33:-2.01691,0,-8.59204 dDocent_Contig_17342 28 . C T 258.334 . AB=0.208333;ABP=20.744;AC=1;AF=0.125;AN=8;AO=5;CIGAR=2X3M3X2M1X;DP=50;DPB=50;DPRA=0;EPP=13.8677;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1.5;MQM=9.2;MQMR=60;NS=4;NUMALT=2;ODDS=3.46945e-18;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=199;QR=1301;RO=33;RPL=0;RPP=13.8677;RPPR=74.6689;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:18:12,2,4:12:463:2,4:79,161:-9.85111,-12.1839,-49.5862,0,-36.9154,-37.0488 0|0:12:9,0,3:9:360:0,3:0,122:-7.76013,-10.4694,-40.12,0,-30.0551,-29.152 0|0:14:9,0,5:9:360:0,5:0,194:-13.617,-16.3263,-45.9895,0,-30.0551,-28.5499 0|1:6:3,3,0:3:118:3,0:120,0:-0.433175,0,-9.19654,-1.33626,-10.0996,-11.1994 dDocent_Contig_17343 62 . G C 98.2454 . AB=0.181818;ABP=32.0291;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=63;DPB=63;DPRA=3.3;EPP=16.0391;EPPR=126.784;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.929825;PAO=0;PQA=0;PQR=0;PRO=0;QA=231;QR=2174;RO=57;RPL=6;RPP=16.0391;RPPR=126.784;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:33:27,6:27:1005:6:231:-11.2225,0,-80.8075 0/0:13:13,0:13:509:0:0:0,-3.91339,-46.1553 0/0:8:8,0:8:302:0:0:0,-2.40824,-27.5344 0/0:9:9,0:9:358:0:0:0,-2.70927,-32.5821 dDocent_Contig_17344 10 . T C 1660.83 . AB=0.642857;ABP=17.9004;AC=2;AF=0.25;AN=8;AO=54;CIGAR=1X;DP=109;DPB=109;DPRA=3.36;EPP=120.27;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.8364;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2157;QR=2165;RO=55;RPL=0;RPP=120.27;RPPR=122.441;RPR=54;RUN=1;SAF=54;SAP=120.27;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:78:25,53:25:988:53:2116:-167.139,0,-65.7338 0/0:23:23,0:23:912:0:0:0,-6.92369,-82.3812 0/0:2:2,0:2:68:0:0:0,-0.60206,-6.45463 0/1:6:5,1:5:197:1:41:-2.28839,0,-16.3002 dDocent_Contig_17345 45 . T G 150.278 . AB=0.258065;ABP=18.771;AC=3;AF=0.375;AN=8;AO=8;CIGAR=2X;DP=39;DPB=39;DPRA=1.29167;EPP=20.3821;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.625;PAIREDR=0.709677;PAO=0;PQA=0;PQR=0;PRO=0;QA=317;QR=1224;RO=31;RPL=0;RPP=20.3821;RPPR=70.3259;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:8:8,0:8:311:0:0:0,-2.40824,-28.3523 0|1:15:11,4:11:435:4:163:-10.543,0,-34.9881 0|1:10:7,3:7:278:3:115:-7.71208,0,-22.3802 0|1:6:5,1:5:200:1:39:-2.09038,0,-16.5737 dDocent_Contig_17346 118 . C T 60.6037 . AB=0.266667;ABP=10.1038;AC=1;AF=0.25;AN=4;AO=4;CIGAR=1X;DP=26;DPB=26;DPRA=1.36364;EPP=11.6962;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=136;QR=760;RO=22;RPL=0;RPP=11.6962;RPPR=50.7827;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=50.7827;SRR=22;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:11,0:11:379:0:0:0,-3.31133,-34.4421 ./.:.:.:.:.:.:.:. 0/1:15:11,4:11:381:4:136:-8.06037,0,-30.1082 ./.:.:.:.:.:.:.:. dDocent_Contig_17347 79 . G T 231.708 . AB=0.5625;ABP=3.55317;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X;DP=80;DPB=80;DPRA=0.75;EPP=22.5536;EPPR=157.185;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.521127;PAO=0;PQA=0;PQR=0;PRO=0;QA=326;QR=2602;RO=71;RPL=9;RPP=22.5536;RPPR=157.185;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=71;SRP=157.185;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:40:40,0:40:1469:0:0:0,-12.0412,-132.503 0/1:16:7,9:7:249:9:326:-24.8695,0,-17.9375 0/0:22:22,0:22:810:0:0:0,-6.62266,-73.2262 0/0:2:2,0:2:74:0:0:0,-0.60206,-7.02588 dDocent_Contig_17348 18 . A G 1274.98 . AB=0.390909;ABP=14.3809;AC=4;AF=0.5;AN=8;AO=43;CIGAR=1X1M;DP=110;DPB=110;DPRA=0;EPP=96.3836;EPPR=122.441;GTI=0;LEN=1;MEANALT=1.75;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1707;QR=2214;RO=55;RPL=0;RPP=96.3836;RPPR=122.441;RPR=43;RUN=1;SAF=43;SAP=96.3836;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:51:20,0,31:20:795:0,31:0,1234:-95.9793,-102,-167.45,0,-65.8477,-56.5158 0|1:36:22,6,8:22:895:6,8:226,319:-19.6592,-7.77629,-79.8026,0,-55.3416,-71.4419 0|1:17:10,5,2:10:401:5,2:201,74:-13.5767,0,-31.5585,-10.5438,-27.0165,-42.979 0|1:6:3,1,2:3:123:1,2:41,80:-5.68048,-3.19619,-13.0533,0,-6.76816,-9.55018 dDocent_Contig_17349 9 . A G 1070.79 . AB=0.75;ABP=9.52472;AC=3;AF=0.375;AN=8;AO=38;CIGAR=1X;DP=70;DPB=70;DPRA=1.46154;EPP=85.5263;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=36.4737;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=0;PAIREDR=0.96875;PAO=0;PQA=0;PQR=0;PRO=0;QA=1449;QR=1208;RO=32;RPL=0;RPP=85.5263;RPPR=72.4974;RPR=38;RUN=1;SAF=38;SAP=85.5263;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:13:13,0:13:500:0:0:0,-3.91339,-45.3484 0/1:12:3,9:3:117:9:347:-23.4564,0,-7.29802 0/0:17:16,1:16:591:1:37:0,-1.53682,-49.9411 1/1:28:0,28:0:0:28:1065:-85.0201,-8.42884,0 dDocent_Contig_17350 7 . A G 1491.75 . AB=0.651163;ABP=20.0791;AC=4;AF=0.5;AN=8;AO=64;CIGAR=1X;DP=108;DPB=108;DPRA=0;EPP=141.985;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2010;QR=1410;RO=43;RPL=0;RPP=141.985;RPPR=96.3836;RPR=64;RUN=1;SAF=64;SAP=141.985;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:8,22:8:281:22:709:-55.0675,0,-16.5974 0/1:56:22,34:22:699:34:1057:-78.5386,0,-46.3546 0/0:14:13,1:13:430:1:35:0,-0.715791,-35.5182 1/1:8:0,7:0:0:7:209:-18.967,-2.10721,0 dDocent_Contig_17351 23 . C T 59.6921 . AB=0.25;ABP=9.52472;AC=1;AF=0.125;AN=8;AO=3;CIGAR=2X;DP=63;DPB=63;DPRA=0.705882;EPP=9.52472;EPPR=133.299;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.966667;PAO=0;PQA=0;PQR=0;PRO=0;QA=121;QR=2390;RO=60;RPL=0;RPP=9.52472;RPPR=133.299;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:22:22,0:22:882:0:0:0,-6.62266,-79.6895 0|0:28:28,0:28:1102:0:0:0,-8.42884,-99.466 0|1:12:9,3:9:365:3:121:-7.66763,0,-29.6027 0|0:1:1,0:1:41:0:0:0,-0.30103,-4.09457 dDocent_Contig_17352 28 . G T 1658.79 . AB=0.468254;ABP=4.11327;AC=4;AF=0.5;AN=8;AO=59;CIGAR=1X;DP=126;DPB=126;DPRA=0;EPP=131.127;EPPR=146.327;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.711864;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2333;QR=2625;RO=66;RPL=0;RPP=131.127;RPPR=146.327;RPR=59;RUN=1;SAF=59;SAP=131.127;SAR=0;SRF=66;SRP=146.327;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:34:21,13:21:820:13:502:-35.2825,0,-63.8723 0/1:36:18,17:18:726:17:681:-50.6734,0,-54.7206 0/1:41:19,22:19:753:22:873:-66.5368,0,-55.7442 0/1:15:8,7:8:326:7:277:-20.7845,0,-25.1942 dDocent_Contig_17353 41 . C T 157.134 . AB=0.181818;ABP=51.3749;AC=3;AF=0.375;AN=8;AO=10;CIGAR=1X;DP=57;DPB=57;DPRA=9.16667;EPP=24.725;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=393;QR=1874;RO=47;RPL=0;RPP=24.725;RPPR=105.07;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:21,2:21:835:2:82:-0.855988,0,-68.5388 0/1:27:22,5:22:881:5:196:-9.88524,0,-71.4721 0/1:5:2,3:2:77:3:115:-9.21806,0,-5.80399 0/0:2:2,0:2:81:0:0:0,-0.60206,-7.68573 dDocent_Contig_17355 1 . N G 73.6244 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=44;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:81:-7.36136,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_17356 12 . G A 1434.24 . AB=0.494737;ABP=3.03316;AC=5;AF=0.625;AN=8;AO=49;CIGAR=1X;DP=97;DPB=97;DPRA=0;EPP=109.412;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=59.8571;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.0204082;PAIREDR=0.979167;PAO=0;PQA=0;PQR=0;PRO=0;QA=1956;QR=1896;RO=48;RPL=0;RPP=109.412;RPPR=107.241;RPR=49;RUN=1;SAF=49;SAP=109.412;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:12,11:12:468:11:436:-32.6694,0,-35.5459 0/1:26:16,10:16:624:10:399:-28.4391,0,-48.6691 0/1:46:20,26:20:804:26:1040:-80.027,0,-58.8307 1/1:2:0,2:0:0:2:81:-7.68573,-0.60206,0 dDocent_Contig_17357 54 . T C 769.088 . AB=0.104167;ABP=68.3354;AC=0;AF=0;AN=8;AO=5;CIGAR=12M1X1M;DP=80;DPB=51.7143;DPRA=0;EPP=13.8677;EPPR=92.0407;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=201;QR=1622;RO=41;RPL=0;RPP=13.8677;RPPR=92.0407;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:35:18,12,4:18:714:12,4:429,162:-29.5711,0,-55.207,-21.6152,-45.4567,-79.2211 0|0:23:13,10,0:13:518:10,0:355,0:-25.3618,0,-40.0447,-29.2752,-43.055,-71.9566 0|0:9:1,8,0:1:39:8,0:273,0:-22.1888,0,-1.18729,-22.4898,-3.59553,-25.7011 0|0:13:9,3,1:9:351:3,1:111,39:-6.35604,0,-27.9477,-5.85445,-25.6449,-34.4192 dDocent_Contig_17358 17 . A T 422.582 . AB=0.5;ABP=3.0103;AC=3;AF=0.375;AN=8;AO=13;CIGAR=1X;DP=51;DPB=51;DPRA=1.55556;EPP=31.2394;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=517;QR=1514;RO=38;RPL=0;RPP=31.2394;RPPR=85.5263;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:10:0,10:0:0:10:408:-37.0806,-3.0103,0 0/0:28:27,1:27:1066:1:27:0,-5.72906,-93.5189 0/0:9:9,0:9:366:0:0:0,-2.70927,-33.3052 0/1:4:2,2:2:82:2:82:-6.57556,0,-6.57556 dDocent_Contig_17360 43 . G A 390.64 . AB=0.625;ABP=5.18177;AC=4;AF=0.5;AN=8;AO=13;CIGAR=2X;DP=32;DPB=32;DPRA=0.487179;EPP=31.2394;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=512;QR=731;RO=19;RPL=0;RPP=31.2394;RPPR=44.2683;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:10:5,5:5:197:5:202:-15.5518,0,-15.0945 0|0:13:13,0:13:494:0:0:0,-3.91339,-44.7924 0|1:6:1,5:1:40:5:192:-15.8425,0,-2.1895 1|1:3:0,3:0:0:3:118:-11.0025,-0.90309,0 dDocent_Contig_17361 16 . C T 38.7948 . AB=0.666667;ABP=3.73412;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X;DP=21;DPB=21;DPRA=0.5;EPP=7.35324;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=68;QR=754;RO=19;RPL=0;RPP=7.35324;RPPR=44.2683;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:7:7,0:7:284:0:0:0,-2.10721,-25.934 0/0:8:8,0:8:324:0:0:0,-2.40824,-29.5292 0/1:3:1,2:1:35:2:68:-5.55154,0,-2.59554 0/0:3:3,0:3:111:0:0:0,-0.90309,-10.3512 dDocent_Contig_17362 48 . C G 192.811 . AB=0.196721;ABP=51.7438;AC=4;AF=0.5;AN=8;AO=12;CIGAR=1X;DP=61;DPB=61;DPRA=0;EPP=29.068;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=473;QR=1967;RO=49;RPL=0;RPP=29.068;RPPR=109.412;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:20,4:20:800:4:158:-7.37555,0,-65.0926 0/1:7:5,2:5:204:2:79:-5.39003,0,-16.6368 0/1:20:15,5:15:600:5:195:-11.9004,0,-48.3187 0/1:10:9,1:9:363:1:41:-1.08427,0,-30.0234 dDocent_Contig_17364 15 . A T 618.347 . AB=0.108696;ABP=64.1892;AC=0;AF=0;AN=8;AO=5;CIGAR=4M1X2M1X;DP=94;DPB=94;DPRA=0;EPP=13.8677;EPPR=92.0407;GTI=0;LEN=1;MEANALT=11;MQM=60;MQMR=60;NS=4;NUMALT=6;ODDS=2.77556e-17;PAIRED=1;PAIREDR=0.97561;PAO=0;PQA=0;PQR=0;PRO=0;QA=202;QR=1626;RO=41;RPL=0;RPP=13.8677;RPPR=92.0407;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:46:6,0,3,15,5,7,2:6:237:0,3,15,5,7,2:0,118,595,202,253,79:-48.3063,-50.1125,-69.614,-40.4057,-59.9072,-59.0041,-1.13144,-20.6337,-10.9267,-16.1183,-33.4573,-52.9592,-43.2523,-3.97768,-51.454,-29.4768,-48.9774,-39.2711,0,-32.3231,-46.8702,-43.6117,-63.1133,-53.4065,-14.1328,-46.4584,-42.477,-62.5112 0|0:24:19,0,2,0,0,0,2:19:759:0,2,0,0,0,2:0,73,0,0,0,66:-0.248398,-5.96797,-68.5153,0,-62.5544,-61.9523,-5.96797,-68.5153,-62.5544,-68.5153,-5.96797,-68.5153,-62.5544,-68.5153,-68.5153,-5.96797,-68.5153,-62.5544,-68.5153,-68.5153,-68.5153,-0.653691,-63.1879,-57.2277,-63.1879,-63.1879,-63.1879,-62.5858 0|0:19:14,0,0,0,0,5,0:14:552:0,0,0,0,5,0:0,0,0,0,202,0:-12.8423,-17.0567,-62.4664,-17.0567,-62.4664,-62.4664,-17.0567,-62.4664,-62.4664,-62.4664,-17.0567,-62.4664,-62.4664,-62.4664,-62.4664,0,-45.8106,-45.8106,-45.8106,-45.8106,-44.3055,-17.0567,-62.4664,-62.4664,-62.4664,-62.4664,-45.8106,-62.4664 0|0:5:2,2,0,0,0,0,0:2:78:2,0,0,0,0,0:81,0,0,0,0,0:-6.07381,0,-5.79633,-6.67587,-6.39839,-13.0809,-6.67587,-6.39839,-13.0809,-13.0809,-6.67587,-6.39839,-13.0809,-13.0809,-13.0809,-6.67587,-6.39839,-13.0809,-13.0809,-13.0809,-13.0809,-6.67587,-6.39839,-13.0809,-13.0809,-13.0809,-13.0809,-13.0809 dDocent_Contig_17365 131 . C T 116.928 . AB=0.259259;ABP=16.6021;AC=4;AF=0.5;AN=8;AO=7;CIGAR=1X;DP=27;DPB=27;DPRA=0;EPP=18.2106;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.857143;PAIREDR=0.9;PAO=0;PQA=0;PQR=0;PRO=0;QA=284;QR=805;RO=20;RPL=0;RPP=18.2106;RPPR=46.4397;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=46.4397;SRR=20;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:9,2:9:362:2:82:-4.46835,0,-29.6332 0/1:8:5,3:5:203:3:122:-8.96425,0,-16.2448 0/1:6:5,1:5:202:1:40:-2.1895,0,-16.7553 0/1:2:1,1:1:38:1:40:-3.39362,0,-3.19521 dDocent_Contig_17366 18 . C T 461.85 . AB=0.241379;ABP=53.5532;AC=2;AF=0.25;AN=8;AO=26;CIGAR=1X;DP=170;DPB=170;DPRA=2.36508;EPP=59.4686;EPPR=315.702;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=0.615385;PAIREDR=0.631944;PAO=0;PQA=0;PQR=0;PRO=0;QA=1036;QR=5798;RO=144;RPL=0;RPP=59.4686;RPPR=315.702;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=144;SRP=315.702;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:55:40,15:40:1625:15:594:-37.2405,0,-129.917 0/0:62:57,5:57:2301:5:202:0,-0.102365,-188.681 0/1:32:26,6:26:1044:6:240:-12.3416,0,-84.6164 0/0:21:21,0:21:828:0:0:0,-6.32163,-74.8325 dDocent_Contig_17367 98 . N A 678.155 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=22;CIGAR=2X;DP=22;DPB=22;DPRA=0;EPP=50.7827;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=732;QR=0;RO=0;RPL=22;RPP=50.7827;RPPR=0;RPR=0;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:4:0,4:0:0:4:138:-12.7604,-1.20412,0 1|1:8:0,8:0:0:8:267:-24.3565,-2.40824,0 1|1:9:0,9:0:0:9:292:-26.5973,-2.70927,0 1|1:1:0,1:0:0:1:35:-3.49863,-0.30103,0 dDocent_Contig_17368 18 . T C 454.276 . AB=0.46875;ABP=3.28173;AC=4;AF=0.5;AN=8;AO=15;CIGAR=1X1M;DP=39;DPB=39;DPRA=0;EPP=35.5824;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=608;QR=789;RO=21;RPL=0;RPP=35.5824;RPPR=48.6112;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:10:1,0,9:1:39:0,9:0,364:-30.1145,-30.4155,-33.6199,0,-3.59553,-0.886264 0|1:13:8,1,4:8:300:1,4:41,164:-11.1281,-10.1522,-34.397,0,-21.1501,-23.334 0|1:9:7,0,2:7:262:0,2:0,80:-4.8823,-6.98951,-28.425,0,-21.8293,-21.2273 0|1:7:5,2,0:5:188:2,0:81,0:-5.57852,0,-15.1765,-7.08367,-15.7785,-22.4659 dDocent_Contig_17369 34 . A G 96.38 . AB=0.26087;ABP=14.4341;AC=3;AF=0.375;AN=8;AO=6;CIGAR=1X;DP=43;DPB=43;DPRA=0.383333;EPP=16.0391;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=230;QR=1397;RO=37;RPL=0;RPP=16.0391;RPPR=83.3548;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:8,4:8:306:4:153:-10.5294,0,-24.2871 0/1:5:4,1:4:157:1:38:-2.29212,0,-13.0037 0/0:20:20,0:20:758:0:0:0,-6.0206,-68.5444 0/1:6:5,1:5:176:1:39:-2.09038,0,-14.3754 dDocent_Contig_17370 54 . C G 46.9606 . AB=0.173913;ABP=24.253;AC=2;AF=0.25;AN=8;AO=5;CIGAR=1X;DP=60;DPB=60;DPRA=0.916667;EPP=13.8677;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=198;QR=2207;RO=55;RPL=5;RPP=13.8677;RPPR=122.441;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:16:16,0:16:631:0:0:0,-4.81648,-57.123 0/1:19:16,3:16:650:3:117:-5.18972,0,-53.1134 0/0:21:20,1:20:803:1:40:0,-2.32595,-68.5921 0/1:4:3,1:3:123:1:41:-2.89045,0,-10.2607 dDocent_Contig_17371 11 . A C 125.972 . AB=0.25;ABP=16.0391;AC=1;AF=0.125;AN=8;AO=11;CIGAR=1X;DP=133;DPB=133;DPRA=2.27451;EPP=26.8965;EPPR=267.93;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=438;QR=4866;RO=122;RPL=0;RPP=26.8965;RPPR=267.93;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=122;SRP=267.93;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:17:17,0:17:680:0:0:0,-5.11751,-61.5301 0/0:54:50,4:50:2010:4:163:0,-1.19719,-166.03 0/0:38:37,1:37:1454:1:40:0,-7.44346,-127.119 0/1:24:18,6:18:722:6:235:-14.2961,0,-58.0815 dDocent_Contig_17372 14 . A C 103.461 . AB=0.113821;ABP=162.34;AC=3;AF=0.375;AN=8;AO=14;CIGAR=1X;DP=130;DPB=130;DPRA=5.85714;EPP=33.4109;EPPR=254.901;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=572;QR=4632;RO=116;RPL=0;RPP=33.4109;RPPR=254.901;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=116;SRP=254.901;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:41:35,6:35:1389:6:245:-10.0872,0,-112.922 0/1:68:62,6:62:2479:6:245:-1.95943,0,-202.781 0/1:14:12,2:12:482:2:82:-3.56526,0,-39.5156 0/0:7:7,0:7:282:0:0:0,-2.10721,-25.7515 dDocent_Contig_17373 14 . C T 292.852 . AB=0.375;ABP=7.35324;AC=2;AF=0.25;AN=8;AO=13;CIGAR=1X;DP=53;DPB=53;DPRA=1.62963;EPP=31.2394;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.692308;PAIREDR=0.95;PAO=0;PQA=0;PQR=0;PRO=0;QA=489;QR=1610;RO=40;RPL=0;RPP=31.2394;RPPR=89.8692;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:8,7:8:324:7:267:-19.8767,0,-25.0137 0/1:17:12,5:12:480:5:195:-12.8064,0,-38.4317 0/0:12:11,1:11:445:1:27:0,-0.912577,-37.7059 0/0:9:9,0:9:361:0:0:0,-2.70927,-32.8537 dDocent_Contig_17374 13 . C G 2116.7 . AB=0.518519;ABP=3.41242;AC=1;AF=0.125;AN=8;AO=70;CIGAR=1X;DP=172;DPB=172;DPRA=10.9459;EPP=155.013;EPPR=224.5;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.990196;PAO=0;PQA=0;PQR=0;PRO=0;QA=2818;QR=4096;RO=102;RPL=0;RPP=155.013;RPPR=224.5;RPR=70;RUN=1;SAF=70;SAP=155.013;SAR=0;SRF=102;SRP=224.5;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:135:65,70:65:2609:70:2818:-213.068,0,-194.293 0/0:18:18,0:18:726:0:0:0,-5.41854,-65.6646 0/0:15:15,0:15:598:0:0:0,-4.51545,-54.1566 0/0:4:4,0:4:163:0:0:0,-1.20412,-15.0584 dDocent_Contig_17375 59 . G T 1170.93 . AB=0.672727;ABP=17.2631;AC=4;AF=0.5;AN=8;AO=38;CIGAR=1X;DP=57;DPB=57;DPRA=18.6667;EPP=85.5263;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1511;QR=743;RO=19;RPL=38;RPP=85.5263;RPPR=44.2683;RPR=0;RUN=1;SAF=38;SAP=85.5263;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:8,4:8:317:4:161:-11.2629,0,-25.2842 0/1:43:10,33:10:385:33:1309:-105.132,0,-22.0566 0/0:1:1,0:1:41:0:0:0,-0.30103,-4.09457 1/1:1:0,1:0:0:1:41:-4.09457,-0.30103,0 dDocent_Contig_17376 16 . C T 403.198 . AB=0.4;ABP=6.05036;AC=4;AF=0.5;AN=8;AO=15;CIGAR=1X;DP=63;DPB=63;DPRA=0.444444;EPP=35.5824;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=590;QR=1950;RO=48;RPL=0;RPP=35.5824;RPPR=107.241;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:18,13:18:730:13:509:-36.8173,0,-56.69 0/0:27:27,0:27:1098:0:0:0,-8.12781,-99.1015 0/1:4:3,1:3:122:1:41:-2.89045,0,-10.1684 1/1:1:0,1:0:0:1:40:-3.99568,-0.30103,0 dDocent_Contig_17377 11 . A T 867.519 . AB=0.434783;ABP=4.70971;AC=4;AF=0.5;AN=8;AO=20;CIGAR=1X3M;DP=74;DPB=74;DPRA=2.09091;EPP=46.4397;EPPR=79.0118;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.914286;PAO=0;PQA=0;PQR=0;PRO=0;QA=794;QR=1367;RO=35;RPL=0;RPP=46.4397;RPPR=79.0118;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:17:8,9,0:8:306:9,0:361,0:-27.7367,0,-22.7805,-30.145,-25.4898,-55.2439 0|1:39:16,9,14:16:626:9,14:355,562:-41.4932,-17.1047,-65.859,0,-22.2581,-47.2525 1|1:7:0,1,6:0:0:1,6:39,232:-22.6471,-19.4407,-19.1397,-3.59553,0,-1.78935 0|0:11:11,0,0:11:435:0,0:0,0:0,-3.31133,-39.5051,-3.31133,-39.5051,-39.5051 dDocent_Contig_17378 157 . A G 53.7045 . AB=0.2;ABP=18.6449;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1X;DP=45;DPB=45;DPRA=0.4;EPP=11.6962;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=0.926829;PAO=0;PQA=0;PQR=0;PRO=0;QA=157;QR=1594;RO=41;RPL=0;RPP=11.6962;RPPR=92.0407;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=92.0407;SRR=41;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:25:25,0:25:985:0:0:0,-7.52575,-88.9568 0/1:17:14,3:14:529:3:118:-5.88538,0,-42.8298 0/1:3:2,1:2:80:1:39:-2.99347,0,-6.6887 ./.:.:.:.:.:.:.:. dDocent_Contig_17379 54 . C G 75.1192 . AB=0.333333;ABP=5.9056;AC=2;AF=0.25;AN=8;AO=4;CIGAR=1X;DP=50;DPB=50;DPRA=0.315789;EPP=11.6962;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=153;QR=1808;RO=46;RPL=4;RPP=11.6962;RPPR=102.898;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:22:22,0:22:869:0:0:0,-6.62266,-78.5216 0/0:16:16,0:16:623:0:0:0,-4.81648,-56.4048 0/1:7:5,2:5:196:2:75:-5.01159,0,-15.9058 0/1:5:3,2:3:120:2:78:-5.89815,0,-9.68216 dDocent_Contig_17380 15 . G A 383.882 . AB=0.271429;ABP=34.7758;AC=4;AF=0.5;AN=8;AO=19;CIGAR=1X;DP=70;DPB=70;DPRA=0;EPP=44.2683;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=59.0526;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.894737;PAIREDR=0.960784;PAO=0;PQA=0;PQR=0;PRO=0;QA=727;QR=1889;RO=51;RPL=0;RPP=44.2683;RPPR=113.755;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:23,3:23:848:3:121:-3.39805,0,-68.8093 0/1:11:7,4:7:266:4:151:-10.645,0,-20.9906 0/1:16:9,7:9:329:7:269:-19.7571,0,-25.1388 0/1:17:12,5:12:446:5:186:-11.9817,0,-35.3666 dDocent_Contig_17381 7 . A G 456.641 . AB=0.254545;ABP=60.5741;AC=4;AF=0.5;AN=8;AO=28;CIGAR=1X;DP=110;DPB=110;DPRA=0;EPP=63.8115;EPPR=178.9;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=944;QR=3075;RO=81;RPL=0;RPP=63.8115;RPPR=178.9;RPR=28;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=81;SRP=178.9;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:18,4:18:694:4:130:-5.39682,0,-56.1712 0/1:33:18,15:18:673:15:521:-37.2755,0,-50.9667 0/1:40:35,5:35:1338:5:162:-2.85661,0,-108.663 0/1:15:10,4:10:370:4:131:-7.51816,0,-29.0427 dDocent_Contig_17382 86 . G T 84.7758 . AB=0.384615;ABP=4.51363;AC=2;AF=0.25;AN=8;AO=6;CIGAR=1X;DP=46;DPB=46;DPRA=2.22222;EPP=16.0391;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=203;QR=1373;RO=40;RPL=6;RPP=16.0391;RPPR=89.8692;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:7:5,2:5:172:2:68:-4.35067,0,-13.7111 0/0:27:26,1:26:895:1:35:0,-4.62918,-77.3665 0/1:6:3,3:3:105:3:100:-7.52435,0,-7.98998 0/0:6:6,0:6:201:0:0:0,-1.80618,-18.4186 dDocent_Contig_17383 112 . C T 85.1543 . AB=0.25;ABP=16.0391;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=48;DPB=48;DPRA=3;EPP=16.0391;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=187;QR=1348;RO=42;RPL=0;RPP=16.0391;RPPR=94.2121;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=94.2121;SRR=42;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:18,6:18:563:6:187:-9.9132,0,-43.742 0/0:16:16,0:16:529:0:0:0,-4.81648,-47.9248 0/0:5:5,0:5:163:0:0:0,-1.50515,-14.9917 0/0:3:3,0:3:93:0:0:0,-0.90309,-8.67801 dDocent_Contig_17384 49 . T C 962.455 . AB=0.275591;ABP=58.5624;AC=3;AF=0.375;AN=8;AO=35;CIGAR=1M1D1X4M;DP=127;DPB=118.857;DPRA=0;EPP=79.0118;EPPR=155.013;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1385;QR=2747;RO=70;RPL=35;RPP=79.0118;RPPR=155.013;RPR=0;RUN=1;SAF=35;SAP=79.0118;SAR=0;SRF=70;SRP=155.013;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:38:30,3,5:30:1187:3,5:113,175:-5.18689,-4.94947,-101.776,0,-88.4513,-96.2028 0|1:48:20,18,10:20:791:18,10:725,389:-53.7402,0,-59.6831,-27.8017,-33.1398,-89.8849 0|1:25:16,8,1:16:607:8,1:307,39:-20.375,0,-47.3532,-21.9849,-46.555,-71.4524 1|0:16:4,6,6:4:162:6,6:240,233:-24.3413,-5.7699,-17.3287,-6.40643,0,-17.9606 dDocent_Contig_17385 177 . A C 39.7354 . AB=0.285714;ABP=5.80219;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X;DP=76;DPB=76;DPRA=0.304348;EPP=7.35324;EPPR=163.699;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=2951;RO=74;RPL=2;RPP=7.35324;RPPR=163.699;RPR=0;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=163.699;SRR=74;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:17:17,0:17:692:0:0:0,-5.11751,-62.6079 0/0:38:38,0:38:1493:0:0:0,-11.4391,-134.604 0/0:14:14,0:14:567:0:0:0,-4.21442,-51.3719 0/1:7:5,2:5:199:2:82:-5.67247,0,-16.1808 dDocent_Contig_17386 27 . A C 268.206 . AB=0.225352;ABP=49.5287;AC=4;AF=0.5;AN=8;AO=16;CIGAR=1X;DP=71;DPB=71;DPRA=0;EPP=37.7539;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=42;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=637;QR=2191;RO=55;RPL=0;RPP=37.7539;RPPR=122.441;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:19,3:19:767:3:120:-3.97746,0,-62.7278 0/1:24:17,7:17:681:7:276:-16.2727,0,-54.395 0/1:10:6,4:6:230:4:163:-11.3971,0,-18.0532 0/1:15:13,2:13:513:2:78:-2.54001,0,-41.9976 dDocent_Contig_17387 85 . C T 167.792 . AB=0.2;ABP=46.0055;AC=2;AF=0.25;AN=8;AO=11;CIGAR=1X;DP=102;DPB=102;DPRA=1.17021;EPP=26.8965;EPPR=198.443;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.933333;PAO=0;PQA=0;PQR=0;PRO=0;QA=401;QR=3234;RO=90;RPL=11;RPP=26.8965;RPPR=198.443;RPR=0;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=90;SRP=198.443;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:39:39,0:39:1399:0:0:0,-11.7402,-126.202 0/1:41:33,8:33:1186:8:290:-14.1063,0,-94.7014 0/1:14:10,3:10:359:3:111:-6.07075,0,-28.3699 0/0:8:8,0:8:290:0:0:0,-2.40824,-26.4481 dDocent_Contig_17388 68 . C G 53.3111 . AB=0.166667;ABP=37.7539;AC=3;AF=0.375;AN=8;AO=6;CIGAR=1X;DP=50;DPB=50;DPRA=0.857143;EPP=16.0391;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.666667;PAIREDR=0.5;PAO=0;PQA=0;PQR=0;PRO=0;QA=213;QR=1595;RO=44;RPL=6;RPP=16.0391;RPPR=98.5551;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:10,3:10:359:3:98:-5.23019,0,-28.739 0/0:14:14,0:14:512:0:0:0,-4.21442,-46.4201 0/1:13:11,2:11:399:2:78:-3.49008,0,-32.34 0/1:10:9,1:9:325:1:37:-0.687529,0,-26.5857 dDocent_Contig_17389 54 . T A 366.063 . AB=0.424242;ABP=4.65535;AC=2;AF=0.333333;AN=6;AO=14;CIGAR=1X;DP=37;DPB=37;DPRA=4.125;EPP=33.4109;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=548;QR=916;RO=23;RPL=14;RPP=33.4109;RPPR=52.9542;RPR=0;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:11,11:11:430:11:426:-32.068,0,-32.4247 0/1:11:8,3:8:326:3:122:-8.06116,0,-26.3983 ./.:.:.:.:.:.:.:. 0/0:4:4,0:4:160:0:0:0,-1.20412,-14.7838 dDocent_Contig_17391 14 . A T 189.539 . AB=0;ABP=0;AC=2;AF=0.25;AN=8;AO=5;CIGAR=1X;DP=40;DPB=40;DPRA=0.428571;EPP=13.8677;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.657143;PAO=0;PQA=0;PQR=0;PRO=0;QA=203;QR=1393;RO=35;RPL=0;RPP=13.8677;RPPR=79.0118;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:21:21,0:21:833:0:0:0,-6.32163,-75.2823 1/1:5:0,5:0:0:5:203:-18.6528,-1.50515,0 0/0:5:5,0:5:202:0:0:0,-1.50515,-18.5615 0/0:9:9,0:9:358:0:0:0,-2.70927,-32.5818 dDocent_Contig_17393 180 . A G 607.064 . AB=0.526316;ABP=3.23888;AC=5;AF=0.625;AN=8;AO=21;CIGAR=1X;DP=39;DPB=39;DPRA=0;EPP=48.6112;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=845;QR=725;RO=18;RPL=21;RPP=48.6112;RPPR=42.0968;RPR=0;RUN=1;SAF=0;SAP=48.6112;SAR=21;SRF=0;SRP=42.0968;SRR=18;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:6,12:6:243:12:483:-38.4017,0,-16.8294 0/1:14:10,4:10:405:4:164:-10.9355,0,-32.596 0/1:6:2,4:2:77:4:161:-13.0687,0,-5.50202 1/1:1:0,1:0:0:1:37:-3.69783,-0.30103,0 dDocent_Contig_17394 24 . C T 184.254 . AB=0.35;ABP=6.91895;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=53;DPB=53;DPRA=1.81818;EPP=18.2106;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=0.73913;PAO=0;PQA=0;PQR=0;PRO=0;QA=283;QR=1756;RO=46;RPL=0;RPP=18.2106;RPPR=102.898;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:13,7:13:498:7:283:-19.8228,0,-39.1421 0/0:24:24,0:24:926:0:0:0,-7.22472,-83.6462 0/0:8:8,0:8:292:0:0:0,-2.40824,-26.6197 0/0:1:1,0:1:40:0:0:0,-0.30103,-3.99568 dDocent_Contig_17395 60 . G A 147.964 . AB=0.304348;ABP=10.6577;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=56;DPB=56;DPRA=2.09091;EPP=10.7656;EPPR=30.7077;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.857143;PAIREDR=0.632653;PAO=0;PQA=0;PQR=0;PRO=0;QA=253;QR=1815;RO=49;RPL=7;RPP=18.2106;RPPR=109.412;RPR=0;RUN=1;SAF=6;SAP=10.7656;SAR=1;SRF=37;SRP=30.7077;SRR=12;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:16,7:16:580:7:253:-16.1944,0,-45.6066 0/0:13:13,0:13:478:0:0:0,-3.91339,-43.3631 0/0:15:15,0:15:574:0:0:0,-4.51545,-51.9903 0/0:5:5,0:5:183:0:0:0,-1.50515,-16.8268 dDocent_Contig_17396 15 . G A 540.405 . AB=0.542857;ABP=3.56868;AC=3;AF=0.375;AN=8;AO=19;CIGAR=1X;DP=49;DPB=49;DPRA=0.833333;EPP=44.2683;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=765;QR=1206;RO=30;RPL=0;RPP=44.2683;RPPR=68.1545;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:3,9:3:121:9:366:-29.6928,0,-7.66784 0/1:15:7,8:7:286:8:319:-24.562,0,-21.5994 0/1:8:6,2:6:239:2:80:-5.18355,0,-19.4756 0/0:14:14,0:14:560:0:0:0,-4.21442,-50.7413 dDocent_Contig_17397 22 . A G 340.501 . AB=0.235955;ABP=56.9067;AC=2;AF=0.25;AN=8;AO=22;CIGAR=1X;DP=161;DPB=161;DPRA=2.10606;EPP=50.7827;EPPR=296.222;GTI=0;LEN=1;MEANALT=1;MQM=47.5;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.985612;PAO=0;PQA=0;PQR=0;PRO=0;QA=751;QR=5493;RO=139;RPL=0;RPP=50.7827;RPPR=304.845;RPR=22;RUN=1;SAF=0;SAP=50.7827;SAR=22;SRF=138;SRP=296.222;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:57:45,12:45:1795:12:402:-18.5877,0,-144.603 0/0:50:49,1:49:1909:1:35:0,-11.697,-168.653 0/1:32:23,9:23:912:9:314:-18.8603,0,-72.7516 0/0:22:22,0:22:877:0:0:0,-6.62266,-79.2413 dDocent_Contig_17398 19 . C T 922.454 . AB=0.353535;ABP=21.4568;AC=4;AF=0.5;AN=8;AO=35;CIGAR=1X;DP=99;DPB=99;DPRA=0;EPP=79.0118;EPPR=141.985;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1422;QR=2581;RO=64;RPL=0;RPP=79.0118;RPPR=141.985;RPR=35;RUN=1;SAF=35;SAP=79.0118;SAR=0;SRF=64;SRP=141.985;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:13,18:13:530:18:735:-57.1409,0,-38.7147 0/1:40:36,4:36:1449:4:164:-3.1087,0,-118.611 0/1:18:9,9:9:368:9:365:-27.7959,0,-28.0668 0/1:10:6,4:6:234:4:158:-11.5895,0,-18.4154 dDocent_Contig_17399 63 . G T 205.675 . AB=0.8;ABP=10.8276;AC=2;AF=0.25;AN=8;AO=8;CIGAR=1X;DP=33;DPB=33;DPRA=0.434783;EPP=20.3821;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=58.84;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.88;PAO=0;PQA=0;PQR=0;PRO=0;QA=287;QR=937;RO=25;RPL=8;RPP=20.3821;RPPR=57.2971;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:12:12,0:12:439:0:0:0,-3.61236,-39.8416 0/0:11:11,0:11:421:0:0:0,-3.31133,-38.2345 0/1:7:1,6:1:38:6:209:-17.0392,0,-1.69006 0/1:3:1,2:1:39:2:78:-6.50021,0,-2.13307 dDocent_Contig_17400 73 . A T 45.5899 . AB=0.0588235;ABP=60.4905;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1M3I8M1X5M1X1M;DP=59;DPB=61.2353;DPRA=8.5;EPP=7.35324;EPPR=100.727;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=4;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=38;QR=1654;RO=45;RPL=2;RPP=7.35324;RPPR=100.727;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:34:23,2,7,2,0:23:837:2,7,2,0:20,165,38,0:-5.87586,-11.6244,-79.4845,0,-67.3697,-66.4419,-9.9845,-77.2777,-65.7426,-77.8589,-12.7996,-80.0866,-68.5491,-78.461,-81.2713 0|0:17:15,0,0,0,2:15:558:0,0,0,2:0,0,0,74:-1.90826,-6.42371,-52.0981,-6.42371,-52.0981,-52.0981,-6.42371,-52.0981,-52.0981,-52.0981,0,-46.0444,-46.0444,-46.0444,-45.4424 0|0:6:5,0,0,0,0:5:184:0,0,0,0:0,0,0,0:0,-1.50515,-16.7051,-1.50515,-16.7051,-16.7051,-1.50515,-16.7051,-16.7051,-16.7051,-1.50515,-16.7051,-16.7051,-16.7051,-16.7051 0|0:2:2,0,0,0,0:2:75:0,0,0,0:0,0,0,0:0,-0.60206,-7.12034,-0.60206,-7.12034,-7.12034,-0.60206,-7.12034,-7.12034,-7.12034,-0.60206,-7.12034,-7.12034,-7.12034,-7.12034 dDocent_Contig_17401 69 . G A 99.1129 . AB=0;ABP=0;AC=2;AF=0.25;AN=8;AO=3;CIGAR=1X;DP=30;DPB=30;DPRA=0.333333;EPP=9.52472;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=103;QR=908;RO=27;RPL=3;RPP=9.52472;RPPR=61.6401;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:18:18,0:18:612:0:0:0,-5.41854,-55.4002 1/1:3:0,3:0:0:3:103:-9.60997,-0.90309,0 0/0:3:3,0:3:88:0:0:0,-0.90309,-8.21075 0/0:6:6,0:6:208:0:0:0,-1.80618,-19.0596 dDocent_Contig_17402 10 . G C 537.819 . AB=0.408163;ABP=6.59988;AC=3;AF=0.375;AN=8;AO=20;CIGAR=1X;DP=66;DPB=66;DPRA=0.960784;EPP=46.4397;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=59.7;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.652174;PAO=0;PQA=0;PQR=0;PRO=0;QA=805;QR=1805;RO=46;RPL=0;RPP=46.4397;RPPR=102.898;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:17:17,0:17:666:0:0:0,-5.11751,-60.2602 0/1:11:7,4:7:274:4:159:-11.3801,0,-21.7144 0/1:30:15,15:15:588:15:605:-45.75,0,-44.2246 0/1:8:7,1:7:277:1:41:-1.68633,0,-22.8899 dDocent_Contig_17403 29 . G A 31.8951 . AB=0.25;ABP=7.35324;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=16;DPB=16;DPRA=2;EPP=7.35324;EPPR=33.4109;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=75;QR=546;RO=14;RPL=0;RPP=7.35324;RPPR=33.4109;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=14;SRP=33.4109;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:8:6,2:6:230:2:75:-4.71135,0,-18.6532 ./.:.:.:.:.:.:.:. 0/0:7:7,0:7:278:0:0:0,-2.10721,-25.3894 0/0:1:1,0:1:38:0:0:0,-0.30103,-3.79727 dDocent_Contig_17407 26 . C A 2156.75 . AB=0.657407;ABP=26.2531;AC=4;AF=0.5;AN=8;AO=71;CIGAR=1X;DP=108;DPB=108;DPRA=0;EPP=157.185;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=0.239437;PAIREDR=0.972973;PAO=0;PQA=0;PQR=0;PRO=0;QA=2824;QR=1482;RO=37;RPL=0;RPP=157.185;RPPR=83.3548;RPR=71;RUN=1;SAF=71;SAP=157.185;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:70:10,60:10:392:60:2380:-193.279,0,-14.5633 0/1:7:6,1:6:244:1:41:-1.98736,0,-20.2316 0/1:23:19,4:19:764:4:160:-7.85974,0,-62.1569 0/1:8:2,6:2:82:6:243:-19.8399,0,-5.37144 dDocent_Contig_17409 78 . T A 84.9632 . AB=0.176471;ABP=33.9218;AC=4;AF=0.5;AN=8;AO=7;CIGAR=1M6D2M1X6M1X4M;DP=49;DPB=46.8095;DPRA=1.02778;EPP=18.2106;EPPR=79.0118;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.857143;PAIREDR=0.6;PAO=0;PQA=0;PQR=0;PRO=0;QA=228;QR=1327;RO=35;RPL=7;RPP=18.2106;RPPR=79.0118;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:28:22,3,2:22:832:3,2:103,64:-1.74787,0,-67.3421,-3.22261,-63.0936,-70.8514 0|0:12:10,0,0:10:379:0,0:0,0:0,-3.0103,-34.0683,-3.0103,-34.0683,-34.0683 0|1:6:3,3,0:3:116:3,0:92,0:-6.77871,0,-9.01152,-7.6818,-9.91461,-17.2499 1|1:3:0,1,0:0:0:1,0:33,0:-3.05753,-0.30103,0,-3.05753,-0.30103,-3.05753 dDocent_Contig_17411 142 . C T 73.9816 . AB=0.137255;ABP=61.2994;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=73;DPB=73;DPRA=4.63636;EPP=18.2106;EPPR=146.327;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=269;QR=2441;RO=66;RPL=0;RPP=18.2106;RPPR=146.327;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=146.327;SRR=66;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:18:18,0:18:697:0:0:0,-5.41854,-63.0633 0/1:51:44,7:44:1593:7:269:-9.22198,0,-128.269 0/0:4:4,0:4:151:0:0:0,-1.20412,-13.957 ./.:.:.:.:.:.:.:. dDocent_Contig_17412 38 . C A 128.533 . AB=0.285714;ABP=11.386;AC=2;AF=0.25;AN=8;AO=6;CIGAR=2X;DP=37;DPB=37;DPRA=1.3125;EPP=16.0391;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=242;QR=1202;RO=31;RPL=0;RPP=16.0391;RPPR=70.3259;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:14:14,0:14:539:0:0:0,-4.21442,-48.8497 0|1:18:13,5:13:500:5:201:-13.0526,0,-39.9227 0|1:3:2,1:2:81:1:41:-3.19148,0,-6.78264 0|0:2:2,0:2:82:0:0:0,-0.60206,-7.77968 dDocent_Contig_17414 14 . A T 38.7978 . AB=0.285714;ABP=5.80219;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X;DP=29;DPB=29;DPRA=0.954545;EPP=7.35324;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=8.67362e-19;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=1080;RO=27;RPL=0;RPP=7.35324;RPPR=61.6401;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:14:14,0:14:557:0:0:0,-4.21442,-50.4685 0/0:3:3,0:3:122:0:0:0,-0.90309,-11.3725 0/0:5:5,0:5:198:0:0:0,-1.50515,-18.197 0/1:7:5,2:5:203:2:81:-5.57852,0,-16.5458 dDocent_Contig_17416 121 . A G 577.73 . AB=0.568182;ABP=4.78696;AC=5;AF=0.625;AN=8;AO=26;CIGAR=1X;DP=45;DPB=45;DPRA=0;EPP=59.4686;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=56.8462;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.923077;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=865;QR=652;RO=19;RPL=0;RPP=59.4686;RPPR=44.2683;RPR=26;RUN=1;SAF=0;SAP=59.4686;SAR=26;SRF=0;SRP=44.2683;SRR=19;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:2,12:2:66:12:386:-30.8358,0,-2.05394 0/1:18:10,8:10:348:8:274:-16.7271,0,-26.2374 0/1:12:7,5:7:238:5:170:-12.0224,0,-18.1402 1/1:1:0,1:0:0:1:35:-3.49863,-0.30103,0 dDocent_Contig_17417 9 . A C 328.1 . AB=0.219512;ABP=59.0449;AC=2;AF=0.25;AN=8;AO=18;CIGAR=1X;DP=132;DPB=132;DPRA=1.64;EPP=42.0968;EPPR=217.034;GTI=0;LEN=1;MEANALT=1;MQM=43.1111;MQMR=43.6579;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.412281;PAO=0;PQA=0;PQR=0;PRO=0;QA=695;QR=4349;RO=114;RPL=0;RPP=42.0968;RPPR=250.558;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=110;SRP=217.034;SRR=4;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:24:24,0:24:912:0:0:0,-7.22472,-75.15 0/1:58:43,15:43:1649:15:579:-33.2028,0,-90.4125 0/1:24:21,3:21:795:3:116:-2.99431,0,-60.2775 0/0:26:26,0:26:993:0:0:0,-7.82678,-80.1353 dDocent_Contig_17418 1 . N G 89.1087 . AB=0.5;ABP=3.0103;AC=2;AF=1;AN=2;AO=2;CIGAR=1X4M;DP=4;DPB=4;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=0;NS=1;NUMALT=2;ODDS=6.61821;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=64;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:4:0,2,2:0:0:2,2:67,64:-10.91,-5.47631,-4.87425,-5.76108,0,-5.15902 .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. dDocent_Contig_17419 39 . G C 509.947 . AB=0.384615;ABP=9.02361;AC=3;AF=0.375;AN=8;AO=21;CIGAR=1X;DP=76;DPB=76;DPRA=0;EPP=48.6112;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.963636;PAO=0;PQA=0;PQR=0;PRO=0;QA=807;QR=2181;RO=55;RPL=0;RPP=48.6112;RPPR=122.441;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:9,11:9:351:11:419:-32.0318,0,-25.9266 0/0:24:23,1:23:904:1:39:0,-3.32816,-77.7711 0/1:13:12,1:12:480:1:41:-0.181177,0,-39.6367 0/1:19:11,8:11:446:8:308:-22.3592,0,-34.7766 dDocent_Contig_17420 11 . G T 282.639 . AB=0.432432;ABP=4.47751;AC=4;AF=0.5;AN=8;AO=26;CIGAR=1X3M1I2M;DP=57;DPB=61.3333;DPRA=1.56667;EPP=59.4686;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=21.3077;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=519;QR=1217;RO=31;RPL=0;RPP=59.4686;RPPR=70.3259;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:29:16,13:16:623:13:336:-18.7953,0,-47.6719 1|1:10:0,10:0:0:10:147:-10.865,-3.0103,0 0|1:8:5,3:5:201:3:36:-0.147857,0,-16.0629 0|0:10:10,0:10:393:0:0:0,-3.0103,-35.728 dDocent_Contig_17422 96 . C T 118.428 . AB=0.5;ABP=3.0103;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=69;DPB=69;DPRA=0.508475;EPP=13.8677;EPPR=141.985;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.90625;PAO=0;PQA=0;PQR=0;PRO=0;QA=180;QR=2384;RO=64;RPL=5;RPP=13.8677;RPPR=4.23175;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=35;SRP=4.23175;SRR=29;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:7:7,0:7:256:0:0:0,-2.10721,-23.3905 0/1:10:5,5:5:183:5:180:-13.5418,0,-13.815 0/0:29:29,0:29:1096:0:0:0,-8.72987,-98.9359 0/0:23:23,0:23:849:0:0:0,-6.92369,-76.7265 dDocent_Contig_17423 105 . N T 383.459 . AB=0;ABP=0;AC=8;AF=1;AN=8;AO=14;CIGAR=3X;DP=14;DPB=14;DPRA=0;EPP=33.4109;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=44.5;MQMR=0;NS=4;NUMALT=1;ODDS=0;PAIRED=0.214286;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=432;QR=0;RO=0;RPL=0;RPP=33.4109;RPPR=0;RPR=14;RUN=1;SAF=0;SAP=33.4109;SAR=14;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:7:0,7:0:0:7:231:-18.7901,-2.10721,0 1|1:2:0,2:0:0:2:70:-6.6474,-0.60206,0 1|1:1:0,1:0:0:1:14:-1.3967,-0.30103,0 1|1:4:0,4:0:0:4:117:-10.8085,-1.20412,0 dDocent_Contig_17424 16 . A C 1316.14 . AB=0.255708;ABP=116.532;AC=4;AF=0.5;AN=8;AO=56;CIGAR=1X;DP=219;DPB=219;DPRA=0;EPP=124.613;EPPR=356.96;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2262;QR=6561;RO=163;RPL=0;RPP=124.613;RPPR=356.96;RPR=56;RUN=1;SAF=56;SAP=124.613;SAR=0;SRF=163;SRP=356.96;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:103:81,22:81:3256:22:892:-49.58,0,-262.088 0/1:71:48,23:48:1934:23:931:-62.7194,0,-152.885 0/1:32:25,7:25:1012:7:283:-16.2106,0,-81.7403 0/1:13:9,4:9:359:4:156:-10.5016,0,-28.7583 dDocent_Contig_17425 151 . T A 218.268 . AB=0.777778;ABP=9.04217;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=47;DPB=47;DPRA=0.710526;EPP=18.2106;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=284;QR=1588;RO=40;RPL=0;RPP=18.2106;RPPR=89.8692;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=89.8692;SRR=40;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:2,7:2:82:7:284:-23.2245,0,-5.07041 0/0:28:28,0:28:1104:0:0:0,-8.42884,-99.6465 0/0:4:4,0:4:163:0:0:0,-1.20412,-15.0584 0/0:6:6,0:6:239:0:0:0,-1.80618,-21.885 dDocent_Contig_17426 32 . A T 161.864 . AB=0.275862;ABP=15.6647;AC=3;AF=0.375;AN=8;AO=8;CIGAR=1X;DP=39;DPB=39;DPRA=0.966667;EPP=20.3821;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.903226;PAO=0;PQA=0;PQR=0;PRO=0;QA=323;QR=1239;RO=31;RPL=0;RPP=20.3821;RPPR=70.3259;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:14,6:14:560:6:241:-16.0457,0,-44.7208 0/0:10:10,0:10:402:0:0:0,-3.0103,-36.5401 0/1:3:2,1:2:78:1:41:-3.19148,0,-6.49969 0/1:6:5,1:5:199:1:41:-2.28839,0,-16.4819 dDocent_Contig_17427 157 . C A 71.8631 . AB=0.464286;ABP=3.32051;AC=3;AF=0.375;AN=8;AO=13;CIGAR=1X;DP=33;DPB=33;DPRA=1.86667;EPP=31.2394;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1.33333;MQM=17;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.947368;PAO=0;PQA=0;PQR=0;PRO=0;QA=524;QR=708;RO=19;RPL=0;RPP=31.2394;RPPR=44.2683;RPR=13;RUN=1;SAF=0;SAP=31.2394;SAR=13;SRF=0;SRP=44.2683;SRR=19;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:7,4:7:277:4:162:-1.63375,0,-21.8174 0/1:7:1,6:1:39:6:242:-8.50282,0,-1.78935 0/1:9:6,3:6:227:3:120:-1.95175,0,-18.0813 0/0:5:5,0:5:165:0:0:0,-1.50515,-15.167 dDocent_Contig_17428 26 . C T 272.095 . AB=0;ABP=0;AC=0;AF=0;AN=8;AO=6;CIGAR=4M1I1X;DP=209;DPB=214.8;DPRA=5.64706;EPP=16.0391;EPPR=398.218;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=245;QR=7207;RO=182;RPL=0;RPP=16.0391;RPPR=398.218;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=182;SRP=398.218;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:96:90,6,0:90:3543:6,0:245,0:0,-6.46941,-296.49,-27.0927,-298.297,-318.513 0|0:88:72,0,12:72:2873:0,12:0,480:-17.8658,-39.5399,-276.15,0,-236.612,-232.999 0|0:8:4,0,4:4:162:0,4:0,164:-12.7417,-13.9458,-27.3016,0,-13.7628,-12.5587 0|0:17:16,0,1:16:629:0,1:0,38:0,-4.81648,-56.5617,-1.32024,-53.4459,-53.1449 dDocent_Contig_17429 177 . A G 1104.89 . AB=0.578947;ABP=6.09608;AC=4;AF=0.5;AN=8;AO=37;CIGAR=1X;DP=65;DPB=65;DPRA=5.08333;EPP=83.3548;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1445;QR=1090;RO=28;RPL=37;RPP=83.3548;RPPR=63.8115;RPR=0;RUN=1;SAF=0;SAP=83.3548;SAR=37;SRF=0;SRP=63.8115;SRR=28;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:35:14,21:14:559:21:839:-65.2883,0,-40.1152 0/1:22:10,12:10:371:12:462:-35.2925,0,-27.1039 1/1:4:0,4:0:0:4:144:-13.3059,-1.20412,0 0/0:4:4,0:4:160:0:0:0,-1.20412,-14.7834 dDocent_Contig_17430 128 . A C 45.3381 . AB=0.214286;ABP=12.937;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=38;DPB=38;DPRA=1.75;EPP=9.52472;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.857143;PAO=0;PQA=0;PQR=0;PRO=0;QA=112;QR=1274;RO=35;RPL=0;RPP=9.52472;RPPR=79.0118;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=79.0118;SRR=35;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:8:8,0:8:287:0:0:0,-2.40824,-26.1687 0/0:15:15,0:15:562:0:0:0,-4.51545,-50.9167 0/1:14:11,3:11:386:3:112:-6.23221,0,-30.8511 0/0:1:1,0:1:39:0:0:0,-0.30103,-3.89656 dDocent_Contig_17431 140 . T C 30.5887 . AB=0.222222;ABP=9.04217;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=26;DPB=26;DPRA=1.05882;EPP=7.35324;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=80;QR=918;RO=24;RPL=0;RPP=7.35324;RPPR=55.1256;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=55.1256;SRR=24;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:13:13,0:13:489:0:0:0,-3.91339,-44.3408 0/1:9:7,2:7:267:2:80:-4.8823,0,-21.6821 ./.:.:.:.:.:.:.:. 0/0:4:4,0:4:162:0:0:0,-1.20412,-14.967 dDocent_Contig_17432 39 . G A 729.229 . AB=0.428571;ABP=5.80219;AC=2;AF=0.25;AN=8;AO=27;CIGAR=1X;DP=81;DPB=81;DPRA=3.5;EPP=61.6401;EPPR=120.27;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1050;QR=2116;RO=54;RPL=0;RPP=61.6401;RPPR=120.27;RPR=27;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:60:35,25:35:1400:25:971:-69.6266,0,-108.195 0/0:10:10,0:10:367:0:0:0,-3.0103,-33.3657 0/1:3:1,2:1:29:2:79:-6.59454,0,-1.99657 0/0:8:8,0:8:320:0:0:0,-2.40824,-29.1661 dDocent_Contig_17433 19 . C A 579.588 . AB=0.292683;ABP=33.6228;AC=3;AF=0.375;AN=8;AO=24;CIGAR=1X;DP=100;DPB=100;DPRA=1.51852;EPP=55.1256;EPPR=168.042;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.5;PAIREDR=0.618421;PAO=0;PQA=0;PQR=0;PRO=0;QA=966;QR=3001;RO=76;RPL=0;RPP=55.1256;RPPR=168.042;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=76;SRP=168.042;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:8,8:8:296:8:325:-24.8029,0,-22.1698 0/1:30:19,11:19:754:11:444:-31.2843,0,-59.1532 0/1:36:31,5:31:1228:5:197:-7.26949,0,-99.9578 0/0:18:18,0:18:723:0:0:0,-5.41854,-65.3938 dDocent_Contig_17434 78 . T C 885.231 . AB=0.4625;ABP=3.98746;AC=3;AF=0.375;AN=8;AO=37;CIGAR=1X;DP=94;DPB=94;DPRA=1.90476;EPP=83.3548;EPPR=126.784;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.72973;PAIREDR=0.614035;PAO=0;PQA=0;PQR=0;PRO=0;QA=1300;QR=1922;RO=57;RPL=21;RPP=4.47751;RPPR=16.763;RPR=16;RUN=1;SAF=21;SAP=4.47751;SAR=16;SRF=38;SRP=16.763;SRR=19;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:14:14,0:14:458:0:0:0,-4.21442,-41.5344 0/1:24:18,6:18:624:6:212:-12.2001,0,-49.2601 0/1:40:19,21:19:649:21:738:-54.7001,0,-46.6821 0/1:16:6,10:6:191:10:350:-27.0209,0,-12.6873 dDocent_Contig_17436 1 . N G 67.3873 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=39;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=76;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:76:-6.73764,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_17437 75 . T G 664.3 . AB=0.741935;ABP=18.771;AC=2;AF=0.25;AN=8;AO=23;CIGAR=1M1X5M;DP=142;DPB=139.857;DPRA=0.161458;EPP=52.9542;EPPR=254.901;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=852;QR=4337;RO=116;RPL=23;RPP=52.9542;RPPR=254.901;RPR=0;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=116;SRP=254.901;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:19:5,0,14:5:196:0,14:0,519:-41.3299,-42.835,-58.959,0,-16.5101,-12.2956 0|0:96:96,0,0:96:3592:0,0:0,0:0,-28.8989,-323.423,-28.8989,-323.423,-323.423 0|0:15:12,3,0:12:439:3,0:89,0:-3.78812,0,-35.335,-7.40048,-36.2381,-43.3282 0|1:12:3,0,9:3:110:0,9:0,333:-26.7082,-27.6113,-36.6019,0,-9.35791,-6.64864 dDocent_Contig_17439 55 . A G 282.406 . AB=0.242424;ABP=41.044;AC=4;AF=0.5;AN=8;AO=16;CIGAR=1X;DP=66;DPB=66;DPRA=0;EPP=37.7539;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=584;QR=1905;RO=50;RPL=16;RPP=37.7539;RPPR=111.584;RPR=0;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:28,3:28:1080:3:122:-2.04056,0,-88.1586 0/1:9:7,2:7:272:2:74:-4.31559,0,-22.1358 0/1:19:9,10:9:319:10:362:-27.1902,0,-23.3178 0/1:7:6,1:6:234:1:26:-0.492618,0,-19.3194 dDocent_Contig_17440 15 . G A 6990.81 . AB=0.796364;ABP=212.806;AC=4;AF=0.5;AN=8;AO=219;CIGAR=1X;DP=275;DPB=275;DPRA=0;EPP=478.563;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=0.0178571;PAO=0;PQA=0;PQR=0;PRO=0;QA=8762;QR=2209;RO=56;RPL=0;RPP=478.563;RPPR=124.613;RPR=219;RUN=1;SAF=219;SAP=478.563;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:75:16,59:16:640:59:2356:-189.619,0,-35.3578 0/1:94:25,69:25:992:69:2774:-221.465,0,-61.2799 0/1:74:10,64:10:398:64:2554:-207.719,0,-13.9016 0/1:32:5,27:5:179:27:1078:-87.6763,0,-6.81809 dDocent_Contig_17441 126 . C A 134.155 . AB=0.272727;ABP=17.8158;AC=3;AF=0.375;AN=8;AO=10;CIGAR=1X;DP=46;DPB=46;DPRA=0;EPP=24.725;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=48.4;MQMR=59.1111;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.888889;PAO=0;PQA=0;PQR=0;PRO=0;QA=345;QR=1248;RO=36;RPL=0;RPP=24.725;RPPR=81.1833;RPR=10;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=81.1833;SRR=36;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:8,4:8:277:4:136:-8.92061,0,-21.6545 0/1:8:5,3:5:175:3:105:-7.35391,0,-13.5933 0/0:13:12,1:12:414:1:35:0,-0.426907,-34.1044 0/1:13:11,2:11:382:2:69:-2.5059,0,-30.8008 dDocent_Contig_17442 14 . C T 1529.63 . AB=0.609756;ABP=7.30028;AC=5;AF=0.625;AN=8;AO=51;CIGAR=1X;DP=67;DPB=67;DPRA=0;EPP=113.755;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=56.7647;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.705882;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1886;QR=606;RO=16;RPL=0;RPP=113.755;RPPR=37.7539;RPR=51;RUN=1;SAF=51;SAP=113.755;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:7,9:7:267:9:330:-25.1367,0,-19.5762 0/1:10:2,8:2:73:8:307:-24.919,0,-3.9204 0/1:15:7,8:7:266:8:292:-21.968,0,-19.7867 1/1:26:0,26:0:0:26:957:-86.3364,-7.82678,0 dDocent_Contig_17443 57 . G A 1048.3 . AB=0.0645161;ABP=156.204;AC=0;AF=0;AN=8;AO=6;CIGAR=4M1X6M;DP=131;DPB=171.909;DPRA=0;EPP=16.0391;EPPR=157.185;GTI=0;LEN=1;MEANALT=3.5;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.833333;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=217;QR=2511;RO=71;RPL=6;RPP=16.0391;RPPR=157.185;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=71;SRP=157.185;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:18:13,5,0:13:464:5,0:170,0:-10.216,0,-36.6791,-14.1294,-38.1843,-51.9691 0|0:64:24,32,3:24:831:32,3:1102,100:-82.2948,0,-57.9116,-81.4302,-59.4556,-148.062 0|0:20:13,7,0:13:461:7,0:235,0:-15.458,0,-35.8055,-19.3714,-37.9128,-56.9419 0|0:29:21,5,3:21:755:5,3:135,117:-4.24556,0,-60.0644,-0.904661,-51.9481,-61.6699 dDocent_Contig_17444 13 . C A 125.373 . AB=0.216216;ABP=28.8919;AC=1;AF=0.125;AN=8;AO=10;CIGAR=1X;DP=114;DPB=114;DPRA=2.67742;EPP=6.48466;EPPR=228.843;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.990385;PAO=0;PQA=0;PQR=0;PRO=0;QA=356;QR=4028;RO=104;RPL=0;RPP=24.725;RPPR=228.843;RPR=10;RUN=1;SAF=7;SAP=6.48466;SAR=3;SRF=104;SRP=228.843;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:37:29,8:29:1157:8:275:-13.9351,0,-93.2747 0/0:28:28,0:28:1098:0:0:0,-8.42884,-99.1045 0/0:46:44,2:44:1671:2:81:0,-6.16165,-142.915 0/0:3:3,0:3:102:0:0:0,-0.90309,-9.5142 dDocent_Contig_17445 65 . G A 302.55 . AB=0.333333;ABP=12.42;AC=3;AF=0.375;AN=8;AO=13;CIGAR=1X;DP=58;DPB=58;DPRA=0.684211;EPP=31.2394;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=514;QR=1816;RO=45;RPL=13;RPP=31.2394;RPPR=100.727;RPR=0;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:12,6:12:485:6:240:-16.5566,0,-38.5827 0/0:19:19,0:19:759:0:0:0,-5.71957,-68.6335 0/1:11:7,4:7:286:4:157:-11.197,0,-22.8035 0/1:10:7,3:7:286:3:117:-7.8994,0,-23.1045 dDocent_Contig_17446 10 . G A 185.484 . AB=0.171429;ABP=68.6508;AC=3;AF=0.375;AN=8;AO=12;CIGAR=1X;DP=77;DPB=77;DPRA=3.33333;EPP=29.068;EPPR=144.156;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.4;PAO=0;PQA=0;PQR=0;PRO=0;QA=487;QR=2496;RO=65;RPL=0;RPP=29.068;RPPR=144.156;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=65;SRP=144.156;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:15,2:15:564:2:82:-2.66217,0,-45.9649 0/1:31:27,4:27:1032:4:163:-5.7265,0,-83.8297 0/1:22:16,6:16:616:6:242:-15.5347,0,-49.149 0/0:7:7,0:7:284:0:0:0,-2.10721,-25.934 dDocent_Contig_17448 12 . C T 34.6051 . AB=0.1875;ABP=16.582;AC=2;AF=0.333333;AN=6;AO=3;CIGAR=1X3M1X;DP=28;DPB=28;DPRA=0.666667;EPP=9.52472;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=990;RO=25;RPL=0;RPP=9.52472;RPPR=57.2971;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. 0|1:12:10,2:10:402:2:81:-4.07337,0,-32.9279 0|1:4:3,1:3:117:1:41:-2.89045,0,-9.70446 0|0:12:12,0:12:471:0:0:0,-3.61236,-42.7395 dDocent_Contig_17449 63 . A C 74.9752 . AB=0.208333;ABP=20.744;AC=2;AF=0.25;AN=8;AO=5;CIGAR=1X;DP=50;DPB=50;DPRA=0.923077;EPP=13.8677;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.2;PAIREDR=0.866667;PAO=0;PQA=0;PQR=0;PRO=0;QA=182;QR=1568;RO=45;RPL=5;RPP=13.8677;RPPR=100.727;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5,0:5:175:0:0:0,-1.50515,-16.0928 0/0:21:21,0:21:731:0:0:0,-6.32163,-66.1067 0/1:14:10,4:10:348:4:145:-9.1912,0,-27.4381 0/1:10:9,1:9:314:1:37:-0.687529,0,-25.5835 dDocent_Contig_17450 27 . T C 260.979 . AB=0.0116279;ABP=181.172;AC=0;AF=0;AN=8;AO=3;CIGAR=1M3I6M1X1M1X2M1X2M2X7M1X2M1X;DP=119;DPB=120.071;DPRA=12.2222;EPP=9.52472;EPPR=207.129;GTI=0;LEN=1;MEANALT=3;MQM=12;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=36;QR=3660;RO=94;RPL=0;RPP=9.52472;RPPR=207.129;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=94;SRP=207.129;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:86:65,1,5,14:65:2530:1,5,14:12,198,570:-27.4954,-46.5565,-254.166,-31.1959,-238.601,-237.613,0,-207.444,-192.094,-203.746 0|0:4:4,0,0,0:4:154:0,0,0:0,0,0:0,-1.20412,-14.232,-1.20412,-14.232,-14.232,-1.20412,-14.232,-14.232,-14.232 0|0:24:21,2,0,0:21:817:2,0,0:24,0,0:0,-5.49075,-72.0137,-6.32163,-72.6158,-73.632,-6.32163,-72.6158,-73.632,-73.632 0|0:5:4,0,0,0:4:159:0,0,0:0,0,0:0,-1.20412,-14.295,-1.20412,-14.295,-14.295,-1.20412,-14.295,-14.295,-14.295 dDocent_Contig_17451 16 . G C 58.764 . AB=0.25;ABP=9.52472;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=35;DPB=35;DPRA=1.56522;EPP=9.52472;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=8.67362e-19;PAIRED=0.666667;PAIREDR=0.78125;PAO=0;PQA=0;PQR=0;PRO=0;QA=120;QR=1276;RO=32;RPL=0;RPP=9.52472;RPPR=72.4974;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:10:10,0:10:396:0:0:0,-3.0103,-35.9941 0/1:12:9,3:9:352:3:120:-7.57533,0,-28.4249 0/0:8:8,0:8:325:0:0:0,-2.40824,-29.6196 0/0:5:5,0:5:203:0:0:0,-1.50515,-18.6531 dDocent_Contig_17453 59 . G C 339.066 . AB=0;ABP=0;AC=2;AF=0.25;AN=8;AO=9;CIGAR=1X;DP=73;DPB=73;DPRA=0.421875;EPP=22.5536;EPPR=141.985;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=366;QR=2549;RO=64;RPL=9;RPP=22.5536;RPPR=141.985;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=64;SRP=141.985;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:9:0,9:0:0:9:366:-33.3046,-2.70927,0 0/0:35:35,0:35:1406:0:0:0,-10.536,-126.795 0/0:19:19,0:19:753:0:0:0,-5.71957,-68.0907 0/0:10:10,0:10:390:0:0:0,-3.0103,-35.4551 dDocent_Contig_17454 29 . G C 1848.53 . AB=0.696629;ABP=32.8985;AC=4;AF=0.5;AN=8;AO=62;CIGAR=1X;DP=89;DPB=89;DPRA=0;EPP=137.642;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.709677;PAIREDR=0.814815;PAO=0;PQA=0;PQR=0;PRO=0;QA=2419;QR=1049;RO=27;RPL=0;RPP=137.642;RPPR=61.6401;RPR=62;RUN=1;SAF=62;SAP=137.642;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:12,17:12:478:17:650:-50.0936,0,-34.6413 0/1:24:3,21:3:115:21:802:-65.2617,0,-3.49849 0/1:28:10,18:10:376:18:728:-57.4163,0,-25.7601 0/1:8:2,6:2:80:6:239:-19.4756,0,-5.18333 dDocent_Contig_17455 78 . T C 41.8619 . AB=0.190476;ABP=20.4855;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=40;DPB=40;DPRA=4.71429;EPP=13.8677;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=161;QR=993;RO=35;RPL=5;RPP=13.8677;RPPR=79.0118;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:12:11,1:11:275:1:29:0,-0.712704,-22.0984 0/0:4:4,0:4:122:0:0:0,-1.20412,-11.2831 0/1:21:17,4:17:505:4:132:-5.88472,0,-39.4177 0/0:3:3,0:3:91:0:0:0,-0.90309,-8.49153 dDocent_Contig_17456 107 . N C 185.785 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=10;CIGAR=1X;DP=10;DPB=10;DPRA=0;EPP=24.725;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=199;QR=0;RO=0;RPL=0;RPP=24.725;RPPR=0;RPR=10;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:7:0,7:0:0:7:155:-14.1706,-2.10721,0 1/1:3:0,3:0:0:3:44:-4.10661,-0.90309,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_17457 9 . A G 1163.44 . AB=0.5;ABP=3.0103;AC=5;AF=0.625;AN=8;AO=37;CIGAR=1X3M;DP=74;DPB=74;DPRA=0;EPP=83.3548;EPPR=52.9542;GTI=0;LEN=1;MEANALT=2.25;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1427;QR=901;RO=23;RPL=0;RPP=83.3548;RPPR=52.9542;RPR=37;RUN=1;SAF=37;SAP=83.3548;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:26:5,5,2,13:5:198:5,2,13:188,80,504:-39.9047,-26.0105,-40.8038,-34.8183,-35.7179,-50.5155,0,-0.906781,-9.7091,-12.3878 0|1:22:9,0,0,13:9:353:0,0,13:0,0,498:-38.544,-41.2533,-70.2878,-41.2533,-70.2878,-70.2878,0,-29.4227,-29.4227,-25.5093 0|1:18:8,0,1,9:8:311:0,1,9:0,40,349:-26.255,-28.6633,-54.2185,-25.367,-50.9228,-50.6217,0,-25.5454,-22.2491,-22.8361 1|1:8:1,0,5,2:1:39:0,5,2:0,198,76:-19.0244,-19.3254,-22.5311,-3.01708,-6.22627,-4.72112,-13.0971,-16.302,0,-15.6999 dDocent_Contig_17459 32 . C A 235.017 . AB=0.203125;ABP=52.0041;AC=3;AF=0.375;AN=8;AO=15;CIGAR=1X;DP=94;DPB=94;DPRA=0;EPP=35.5824;EPPR=174.557;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.987342;PAO=0;PQA=0;PQR=0;PRO=0;QA=599;QR=3195;RO=79;RPL=0;RPP=35.5824;RPPR=174.557;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=79;SRP=174.557;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:30:28,2:28:1134:2:77:0,-1.72176,-95.0313 0/1:28:24,4:24:964:4:163:-6.62959,0,-78.6311 0/1:31:23,8:23:935:8:319:-19.7457,0,-75.1189 0/1:5:4,1:4:162:1:40:-2.49053,0,-13.4616 dDocent_Contig_17460 20 . G A 403.219 . AB=0.666667;ABP=8.07707;AC=2;AF=0.25;AN=8;AO=14;CIGAR=1X;DP=32;DPB=32;DPRA=1.90909;EPP=33.4109;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=547;QR=720;RO=18;RPL=0;RPP=33.4109;RPPR=42.0968;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:6,9:6:241:9:349:-27.2485,0,-17.5509 0/1:6:1,5:1:39:5:198:-16.3909,0,-2.09038 0/0:2:2,0:2:82:0:0:0,-0.60206,-7.77968 0/0:9:9,0:9:358:0:0:0,-2.70927,-32.5809 dDocent_Contig_17461 87 . C T 67.9463 . AB=0.227273;ABP=17.2236;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=41;DPB=41;DPRA=0;EPP=16.0391;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=216;QR=1233;RO=35;RPL=6;RPP=16.0391;RPPR=79.0118;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:19:18,1:18:638:1:36:0,-2.12129,-54.1502 0/1:20:16,4:16:559:4:144:-7.29302,0,-44.6168 0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621 ./.:.:.:.:.:.:.:. dDocent_Contig_17462 26 . A C 158.604 . AB=0.235294;ABP=13.3567;AC=3;AF=0.375;AN=8;AO=7;CIGAR=1X1M1X;DP=73;DPB=73;DPRA=0.64;EPP=18.2106;EPPR=146.327;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.984848;PAO=0;PQA=0;PQR=0;PRO=0;QA=281;QR=2558;RO=66;RPL=0;RPP=18.2106;RPPR=146.327;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=66;SRP=146.327;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:17:13,4:13:487:4:160:-9.66629,0,-39.0474 0|0:25:25,0:25:973:0:0:0,-7.52575,-87.8691 0|0:29:28,1:28:1098:1:41:0,-4.6353,-95.0081 1|1:2:0,2:0:0:2:80:-7.59179,-0.60206,0 dDocent_Contig_17463 107 . N G 84.5776 . AB=0;ABP=0;AC=4;AF=0.5;AN=8;AO=3;CIGAR=1X;DP=5;DPB=5;DPRA=1.5;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=4;NUMALT=1;ODDS=2.1684e-19;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=79;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1:0,1:0:0:1:35:-3.49863,-0.30103,0 0/0:1:0,0:0:0:0:0:0,0,0 1/1:2:0,2:0:0:2:44:-4.17896,-0.60206,0 0/0:1:0,0:0:0:0:0:0,0,0 dDocent_Contig_17464 7 . A G 293.441 . AB=0.297297;ABP=16.2152;AC=4;AF=0.5;AN=8;AO=15;CIGAR=1X;DP=42;DPB=42;DPRA=13.6667;EPP=35.5824;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=477;QR=1034;RO=27;RPL=0;RPP=35.5824;RPPR=61.6401;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:8,7:8:311:7:238:-17.2354,0,-23.8389 0/1:22:18,4:18:684:4:99:-2.53154,0,-55.2673 1/1:4:0,4:0:0:4:140:-12.9438,-1.20412,0 0/0:1:1,0:1:39:0:0:0,-0.30103,-3.89656 dDocent_Contig_17465 9 . A C 199.928 . AB=0.30303;ABP=14.1309;AC=3;AF=0.375;AN=8;AO=10;CIGAR=1X;DP=52;DPB=52;DPRA=0.578947;EPP=3.0103;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=366;QR=1628;RO=42;RPL=0;RPP=24.725;RPPR=94.2121;RPR=10;RUN=1;SAF=5;SAP=3.0103;SAR=5;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:19,2:19:736:2:74:-0.703804,0,-60.2497 0/1:8:2,6:2:77:6:218:-17.5638,0,-4.9009 0/0:19:19,0:19:737:0:0:0,-5.71957,-66.6607 0/1:4:2,2:2:78:2:74:-5.82131,0,-6.19935 dDocent_Contig_17466 47 . G T 30.7079 . AB=0.2;ABP=10.8276;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X;DP=53;DPB=53;DPRA=0.697674;EPP=7.35324;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.941176;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=2025;RO=51;RPL=0;RPP=7.35324;RPPR=113.755;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:24:24,0:24:945:0:0:0,-7.22472,-85.3428 0/1:10:8,2:8:321:2:82:-4.76938,0,-26.248 0/0:13:13,0:13:513:0:0:0,-3.91339,-46.5134 0/0:6:6,0:6:246:0:0:0,-1.80618,-22.5201 dDocent_Contig_17467 98 . N T 126.589 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=130;QR=0;RO=0;RPL=4;RPP=11.6962;RPPR=0;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:96:-8.9575,-0.90309,0 ./.:.:.:.:.:.:.:. 1/1:1:0,1:0:0:1:34:-3.39891,-0.30103,0 ./.:.:.:.:.:.:.:. dDocent_Contig_17468 90 . C G 50.252 . AB=0.148936;ABP=53.3238;AC=2;AF=0.25;AN=8;AO=7;CIGAR=1X;DP=52;DPB=52;DPRA=9.4;EPP=18.2106;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.955556;PAO=0;PQA=0;PQR=0;PRO=0;QA=243;QR=1540;RO=45;RPL=7;RPP=18.2106;RPPR=100.727;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:20,4:20:671:4:138:-5.53568,0,-53.4783 0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9449 0/1:23:20,3:20:695:3:105:-2.87247,0,-55.9501 0/0:1:1,0:1:34:0:0:0,-0.30103,-3.39891 dDocent_Contig_17469 132 . A T 435.26 . AB=0.444444;ABP=4.21667;AC=4;AF=0.5;AN=8;AO=20;CIGAR=1X;DP=45;DPB=45;DPRA=0;EPP=46.4397;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=701;QR=881;RO=25;RPL=0;RPP=46.4397;RPPR=57.2971;RPR=20;RUN=1;SAF=0;SAP=46.4397;SAR=20;SRF=0;SRP=57.2971;SRR=25;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:14,3:14:488:3:96:-3.8397,0,-39.1314 0/1:13:4,9:4:145:9:322:-25.4109,0,-9.49231 0/1:12:6,6:6:211:6:211:-15.7211,0,-15.7207 0/1:3:1,2:1:37:2:72:-5.93363,0,-2.79474 dDocent_Contig_17470 146 . C T 340.932 . AB=0.341463;ABP=11.961;AC=1;AF=0.125;AN=8;AO=14;CIGAR=1X;DP=76;DPB=76;DPRA=3.51429;EPP=33.4109;EPPR=137.642;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.983871;PAO=0;PQA=0;PQR=0;PRO=0;QA=531;QR=2296;RO=62;RPL=0;RPP=33.4109;RPPR=137.642;RPR=14;RUN=1;SAF=0;SAP=33.4109;SAR=14;SRF=0;SRP=137.642;SRR=62;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:29:29,0:29:1085:0:0:0,-8.72987,-97.9517 0/1:41:27,14:27:999:14:531:-35.791,0,-77.8769 0/0:5:5,0:5:189:0:0:0,-1.50515,-17.3746 0/0:1:1,0:1:23:0:0:0,-0.30103,-2.29991 dDocent_Contig_17471 151 . A T 200.958 . AB=0.5;ABP=3.0103;AC=3;AF=0.375;AN=8;AO=8;CIGAR=1X;DP=26;DPB=26;DPRA=1.36364;EPP=20.3821;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=278;QR=612;RO=18;RPL=0;RPP=20.3821;RPPR=42.0968;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=42.0968;SRR=18;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:7,7:7:244:7:243:-17.9945,0,-18.0856 0/0:5:5,0:5:174:0:0:0,-1.50515,-16.002 0/0:6:6,0:6:194:0:0:0,-1.80618,-17.7773 1/1:1:0,1:0:0:1:35:-3.49863,-0.30103,0 dDocent_Contig_17472 66 . A G 299.135 . AB=0.423077;ABP=4.34659;AC=2;AF=0.25;AN=8;AO=11;CIGAR=1X;DP=37;DPB=37;DPRA=2.36364;EPP=26.8965;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=448;QR=1036;RO=26;RPL=11;RPP=26.8965;RPPR=59.4686;RPR=0;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:10,10:10:399:10:407:-30.97,0,-30.2478 0/0:10:10,0:10:400:0:0:0,-3.0103,-36.3597 0/1:6:5,1:5:199:1:41:-2.28839,0,-16.4818 0/0:1:1,0:1:38:0:0:0,-0.30103,-3.79727 dDocent_Contig_17473 162 . A T 234.515 . AB=0.222222;ABP=21.1059;AC=3;AF=0.5;AN=6;AO=10;CIGAR=1X;DP=46;DPB=46;DPRA=1.03333;EPP=24.725;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=360;QR=1367;RO=36;RPL=10;RPP=24.725;RPPR=81.1833;RPR=0;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=81.1833;SRR=36;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:15:15,0:15:595:0:0:0,-4.51545,-53.8888 0/1:27:21,6:21:772:6:214:-11.4766,0,-61.6527 1/1:4:0,4:0:0:4:146:-13.4977,-1.20412,0 ./.:.:.:.:.:.:.:. dDocent_Contig_17475 34 . G A 736.867 . AB=0.705882;ABP=15.5282;AC=1;AF=0.125;AN=8;AO=24;CIGAR=1X;DP=48;DPB=48;DPRA=7.28571;EPP=55.1256;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=948;QR=949;RO=24;RPL=0;RPP=55.1256;RPPR=55.1256;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:9:9,0:9:363:0:0:0,-2.70927,-33.0343 0/1:34:10,24:10:393:24:948:-75.3853,0,-25.4907 0/0:3:3,0:3:112:0:0:0,-0.90309,-10.4428 0/0:2:2,0:2:81:0:0:0,-0.60206,-7.68573 dDocent_Contig_17478 53 . A G 354.468 . AB=0.271186;ABP=29.8409;AC=2;AF=0.25;AN=8;AO=20;CIGAR=1X3M;DP=114;DPB=114;DPRA=0;EPP=46.4397;EPPR=200.614;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=779;QR=3548;RO=91;RPL=20;RPP=46.4397;RPPR=200.614;RPR=0;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=91;SRP=200.614;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:39:36,0,3:36:1415:0,3:0,119:0,-10.8371,-127.218,-0.645155,-117.422,-116.519 0|1:26:21,0,5:21:815:0,5:0,181:-8.81139,-15.133,-82.1143,0,-67.348,-65.8429 0|1:33:20,2,11:20:784:2,11:82,438:-30.0329,-29.2835,-93.1474,0,-57.6839,-61.1423 0|0:16:14,0,1:14:534:0,1:0,41:0,-4.21442,-48.0037,-0.820439,-44.6179,-44.3169 dDocent_Contig_17479 23 . T G 1037.35 . AB=0.62069;ABP=10.3484;AC=4;AF=0.5;AN=8;AO=36;CIGAR=1X3M1X;DP=58;DPB=58;DPRA=0;EPP=81.1833;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1413;QR=873;RO=22;RPL=0;RPP=81.1833;RPPR=50.7827;RPR=36;RUN=1;SAF=36;SAP=81.1833;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:19:8,11:8:317:11:433:-33.5999,0,-23.1758 0|1:27:9,18:9:357:18:715:-56.5488,0,-24.3648 0|1:7:2,5:2:78:5:184:-14.8038,0,-5.29609 0|1:5:3,2:3:121:2:81:-6.18058,0,-9.77505 dDocent_Contig_17480 24 . T C 799.67 . AB=0;ABP=0;AC=4;AF=0.5;AN=8;AO=24;CIGAR=1X;DP=47;DPB=47;DPRA=2.8;EPP=55.1256;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=912;QR=909;RO=23;RPL=0;RPP=55.1256;RPPR=52.9542;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:21:0,21:0:0:21:794:-71.7731,-6.32163,0 0/0:19:18,1:18:712:1:38:0,-1.9223,-60.6132 0/0:5:5,0:5:197:0:0:0,-1.50515,-18.1064 1/1:2:0,2:0:0:2:80:-7.59157,-0.60206,0 dDocent_Contig_17481 121 . T A 49.7489 . AB=0.146341;ABP=47.552;AC=3;AF=0.375;AN=8;AO=6;CIGAR=1M1X3M;DP=52;DPB=52.6;DPRA=0;EPP=16.0391;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0.651163;PAO=0;PQA=0;PQR=0;PRO=0;QA=210;QR=1447;RO=43;RPL=0;RPP=16.0391;RPPR=96.3836;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=96.3836;SRR=43;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:14:12,0,2:12:379:0,2:0,70:-2.43291,-6.04527,-36.5032,0,-30.8029,-30.2009 0|1:21:18,1,2:18:621:1,2:35,72:-0.462938,-3.03706,-53.173,0,-47.5977,-49.8436 0|0:11:9,2,0:9:317:2,0:69,0:-3.24133,0,-25.559,-5.9506,-26.1611,-31.7655 0|1:6:4,0,2:4:130:0,2:0,68:-4.65153,-5.85565,-16.3383,0,-10.8175,-10.2155 dDocent_Contig_17482 85 . C T 140.354 . AB=0.243243;ABP=24.1968;AC=3;AF=0.5;AN=6;AO=9;CIGAR=2X;DP=37;DPB=37;DPRA=0;EPP=22.5536;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.333333;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=312;QR=920;RO=27;RPL=9;RPP=22.5536;RPPR=61.6401;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. 0|1:25:17,7:17:570:7:242:-14.6223,0,-44.1292 0|1:10:9,1:9:315:1:35:-0.488329,0,-25.6785 0|1:2:1,1:1:35:1:35:-2.89657,0,-2.89657 dDocent_Contig_17484 35 . T A 1765.8 . AB=0.655556;ABP=21.9262;AC=4;AF=0.5;AN=8;AO=59;CIGAR=1X;DP=90;DPB=90;DPRA=0;EPP=131.127;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2323;QR=1222;RO=31;RPL=0;RPP=131.127;RPPR=70.3259;RPR=59;RUN=1;SAF=59;SAP=131.127;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:6,13:6:242:13:512:-40.7007,0,-16.4374 0/1:35:10,25:10:387:25:985:-78.4123,0,-24.6491 0/1:20:2,18:2:78:18:703:-57.5733,0,-1.38218 0/1:16:13,3:13:515:3:123:-6.64831,0,-41.8813 dDocent_Contig_17486 20 . T C 87.4671 . AB=0.176471;ABP=33.9218;AC=2;AF=0.25;AN=8;AO=6;CIGAR=2X;DP=61;DPB=61;DPRA=1.25926;EPP=16.0391;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=240;QR=2139;RO=55;RPL=0;RPP=16.0391;RPPR=122.441;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:28:24,4:24:934:4:158:-6.17113,0,-75.938 0|0:19:19,0:19:728:0:0:0,-5.71957,-65.8369 0|0:8:8,0:8:322:0:0:0,-2.40824,-29.3483 0|1:6:4,2:4:155:2:82:-5.9735,0,-12.5171 dDocent_Contig_17487 19 . A G 49.1165 . AB=0.3;ABP=6.48466;AC=2;AF=0.25;AN=8;AO=3;CIGAR=1X;DP=20;DPB=20;DPRA=1;EPP=9.52472;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=0.666667;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=117;QR=622;RO=17;RPL=0;RPP=9.52472;RPPR=39.9253;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:8:6,2:6:234:2:76:-4.80602,0,-19.0219 0/0:9:9,0:9:318:0:0:0,-2.70927,-28.9486 0/1:2:1,1:1:38:1:41:-3.49251,0,-3.19521 0/0:1:1,0:1:32:0:0:0,-0.30103,-3.19931 dDocent_Contig_17488 120 . G T 324.772 . AB=0.2;ABP=6.91895;AC=3;AF=0.375;AN=8;AO=12;CIGAR=1X;DP=53;DPB=53;DPRA=0.432432;EPP=29.068;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=388;QR=1357;RO=41;RPL=0;RPP=29.068;RPPR=92.0407;RPR=12;RUN=1;SAF=0;SAP=29.068;SAR=12;SRF=0;SRP=92.0407;SRR=41;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:13:13,0:13:418:0:0:0,-3.91339,-37.9283 1/1:11:0,11:0:0:11:353:-32.0806,-3.31133,0 0/0:24:24,0:24:799:0:0:0,-7.22472,-72.2185 0/1:5:4,1:4:140:1:35:-1.99348,0,-11.4398 dDocent_Contig_17489 92 . C G 211.785 . AB=0.333333;ABP=10.9724;AC=2;AF=0.25;AN=8;AO=12;CIGAR=1X;DP=55;DPB=55;DPRA=1.7037;EPP=29.068;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.916667;PAIREDR=0.883721;PAO=0;PQA=0;PQR=0;PRO=0;QA=410;QR=1495;RO=43;RPL=12;RPP=29.068;RPPR=96.3836;RPR=0;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:9:9,0:9:315:0:0:0,-2.70927,-28.6888 0/1:23:18,5:18:624:5:166:-8.34391,0,-49.562 0/0:13:12,1:12:418:1:34:0,-0.514479,-34.555 0/1:10:4,6:4:138:6:210:-16.2322,0,-9.75015 dDocent_Contig_17490 10 . C T 70.4573 . AB=0.230769;ABP=19.3799;AC=2;AF=0.25;AN=8;AO=6;CIGAR=1X;DP=49;DPB=49;DPRA=1.13043;EPP=16.0391;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=34;MQMR=54.5581;NS=4;NUMALT=1;ODDS=1.73472e-18;PAIRED=0;PAIREDR=0.697674;PAO=0;PQA=0;PQR=0;PRO=0;QA=234;QR=1720;RO=43;RPL=0;RPP=16.0391;RPPR=96.3836;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:13:13,0:13:530:0:0:0,-3.91339,-47.8211 0/1:10:8,2:8:323:2:82:-3.29964,0,-26.4287 0/1:16:12,4:12:477:4:152:-7.13862,0,-37.4679 0/0:10:10,0:10:390:0:0:0,-3.0103,-34.196 dDocent_Contig_17491 20 . G A 76.8244 . AB=0.5;ABP=3.0103;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=42;DPB=42;DPRA=0.5;EPP=9.52472;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=120;QR=1568;RO=39;RPL=0;RPP=9.52472;RPPR=87.6977;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:27:27,0:27:1088:0:0:0,-8.12781,-98.2052 0/1:6:3,3:3:123:3:120:-9.38113,0,-9.65861 0/0:7:7,0:7:275:0:0:0,-2.10721,-25.1164 0/0:2:2,0:2:82:0:0:0,-0.60206,-7.77968 dDocent_Contig_17492 7 . A T 38.6861 . AB=0.395349;ABP=7.10075;AC=2;AF=0.25;AN=8;AO=25;CIGAR=1X;DP=99;DPB=99;DPRA=0;EPP=28.1125;EPPR=108.649;GTI=0;LEN=1;MEANALT=1;MQM=12.96;MQMR=59.9459;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=0;PAIREDR=0.905405;PAO=0;PQA=0;PQR=0;PRO=0;QA=885;QR=2826;RO=74;RPL=0;RPP=57.2971;RPPR=163.699;RPR=25;RUN=1;SAF=4;SAP=28.1125;SAR=21;SRF=67;SRP=108.649;SRR=7;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:32:28,4:28:1082:4:140:0,-4.46517,-92.5176 0/1:31:20,11:20:754:11:398:-3.1907,0,-58.8517 0/0:24:20,4:20:757:4:139:0,-2.97887,-64.2111 0/1:12:6,6:6:233:6:208:-4.06793,0,-17.7277 dDocent_Contig_17493 98 . N G 989.584 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=32;CIGAR=1X;DP=32;DPB=32;DPRA=0;EPP=72.4974;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1089;QR=0;RO=0;RPL=32;RPP=72.4974;RPPR=0;RPR=0;RUN=1;SAF=32;SAP=72.4974;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:13:0,13:0:0:13:444:-40.2876,-3.91339,0 ./.:.:.:.:.:.:.:. 1/1:19:0,19:0:0:19:645:-58.3698,-5.71957,0 ./.:.:.:.:.:.:.:. dDocent_Contig_17494 51 . T A 294.65 . AB=0.545455;ABP=3.40511;AC=1;AF=0.125;AN=8;AO=12;CIGAR=1X;DP=34;DPB=34;DPRA=5.5;EPP=29.068;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=413;QR=871;RO=22;RPL=12;RPP=29.068;RPPR=50.7827;RPR=0;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:10,12:10:392:12:413:-30.8627,0,-29.0095 0/0:5:5,0:5:196:0:0:0,-1.50515,-18.0143 0/0:4:4,0:4:161:0:0:0,-1.20412,-14.8753 0/0:3:3,0:3:122:0:0:0,-0.90309,-11.3725 dDocent_Contig_17496 22 . A G 48.3918 . AB=0.142857;ABP=34.0313;AC=1;AF=0.125;AN=8;AO=5;CIGAR=1X;DP=61;DPB=61;DPRA=2.58824;EPP=13.8677;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.946429;PAO=0;PQA=0;PQR=0;PRO=0;QA=203;QR=2241;RO=56;RPL=0;RPP=13.8677;RPPR=124.613;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:12:12,0:12:474:0:0:0,-3.61236,-43.0066 0/1:28:24,4:24:962:4:162:-6.53791,0,-78.4527 0/0:16:15,1:15:608:1:41:0,-0.721913,-50.9635 0/0:5:5,0:5:197:0:0:0,-1.50515,-18.104 dDocent_Contig_17497 11 . A T 210.647 . AB=0.263158;ABP=21.525;AC=3;AF=0.375;AN=8;AO=10;CIGAR=1X1M2X;DP=50;DPB=50;DPRA=1.05556;EPP=24.725;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=396;QR=1602;RO=40;RPL=0;RPP=24.725;RPPR=89.8692;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:13:10,3:10:405:3:116:-6.90289,0,-32.8972 0|0:12:12,0:12:479:0:0:0,-3.61236,-43.4613 0|1:15:9,6:9:359:6:241:-17.5514,0,-28.1582 0|1:10:9,1:9:359:1:39:-0.886264,0,-29.6636 dDocent_Contig_17498 47 . T C 1527.54 . AB=0.196078;ABP=43.9277;AC=1;AF=0.125;AN=8;AO=10;CIGAR=1M1I2M1X;DP=85;DPB=100;DPRA=12.75;EPP=24.725;EPPR=55.1256;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=389;QR=943;RO=24;RPL=0;RPP=24.725;RPPR=55.1256;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:51:7,10,34:7:275:10,34:389,1278:-111.927,-82.0633,-101.674,-9.34616,0,-21.7311 0|0:4:0,0,4:0:0:0,4:0,148:-13.6798,-13.6798,-13.6798,-1.20412,-1.20412,0 0|0:17:12,0,4:12:468:0,4:0,154:-9.0119,-12.6243,-51.0915,0,-38.4489,-37.2448 0|0:13:5,0,8:5:200:0,8:0,301:-23.5326,-25.0377,-41.522,0,-16.8748,-14.4665 dDocent_Contig_17499 69 . A T 225.411 . AB=0.366667;ABP=7.64277;AC=2;AF=0.25;AN=8;AO=11;CIGAR=1X;DP=49;DPB=49;DPRA=1.57895;EPP=26.8965;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=381;QR=1307;RO=38;RPL=11;RPP=26.8965;RPPR=85.5263;RPR=0;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:6:6,0:6:213:0:0:0,-1.80618,-19.5165 0/1:18:10,8:10:374:8:277:-19.8483,0,-28.5886 0/1:12:9,3:9:295:3:104:-6.09073,0,-23.2541 0/0:13:13,0:13:425:0:0:0,-3.91339,-38.5607 dDocent_Contig_17501 58 . T C 40.7198 . AB=0.136364;ABP=53.5464;AC=3;AF=0.5;AN=6;AO=6;CIGAR=1X;DP=44;DPB=44;DPRA=0;EPP=16.0391;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=234;QR=1489;RO=37;RPL=6;RPP=16.0391;RPPR=83.3548;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:8,1:8:324:1:41:-1.3853,0,-26.8201 0/1:30:25,4:25:1002:4:157:-5.37133,0,-81.3382 0/1:5:4,1:4:163:1:36:-2.09312,0,-13.5533 ./.:.:.:.:.:.:.:. dDocent_Contig_17503 74 . T A 471.149 . AB=0.277778;ABP=41.6143;AC=4;AF=0.5;AN=8;AO=25;CIGAR=1X3M1X;DP=90;DPB=90;DPRA=0;EPP=57.2971;EPPR=141.985;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.96875;PAO=0;PQA=0;PQR=0;PRO=0;QA=892;QR=2255;RO=64;RPL=25;RPP=57.2971;RPPR=141.985;RPR=0;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=64;SRP=141.985;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:48:40,7:40:1420:7:253:-8.61113,0,-113.586 0|1:8:5,3:5:175:3:107:-7.57393,0,-13.6851 0|1:20:10,10:10:345:10:358:-26.5411,0,-25.3595 0|1:14:9,5:9:315:5:174:-11.7867,0,-24.4728 dDocent_Contig_17505 7 . A C 51.5858 . AB=0;ABP=0;AC=0;AF=0;AN=8;AO=2;CIGAR=1X3M1X3M1D3M1X2M1X1M1I2M;DP=41;DPB=41;DPRA=0.6;EPP=7.35324;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=10;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0.972222;PAO=0;PQA=0;PQR=0;PRO=0;QA=20;QR=1390;RO=36;RPL=0;RPP=7.35324;RPPR=81.1833;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:6:4,2,0:4:157:2,0:20,0:0,-0.435812,-13.1386,-1.20412,-13.7407,-14.3302 0|0:15:12,0,3:12:460:0,3:0,122:-6.85704,-10.4694,-48.2008,0,-38.133,-37.2299 0|0:14:14,0,0:14:547:0,0:0,0:0,-4.21442,-49.5735,-4.21442,-49.5735,-49.5735 0|0:6:6,0,0:6:226:0,0:0,0:0,-1.80618,-20.7011,-1.80618,-20.7011,-20.7011 dDocent_Contig_17506 114 . G A 271.085 . AB=0.40625;ABP=5.45321;AC=3;AF=0.5;AN=6;AO=13;CIGAR=1X2M1X;DP=32;DPB=32;DPRA=0;EPP=31.2394;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=447;QR=651;RO=19;RPL=0;RPP=31.2394;RPPR=44.2683;RPR=13;RUN=1;SAF=0;SAP=31.2394;SAR=13;SRF=0;SRP=44.2683;SRR=19;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:15:6,9:6:209:9:311:-23.8099,0,-14.6356 0|1:8:7,1:7:241:1:34:-0.990671,0,-19.6182 0|1:9:6,3:6:201:3:102:-6.80753,0,-15.7101 .:.:.:.:.:.:.:. dDocent_Contig_17508 10 . C A 407.982 . AB=0.38;ABP=9.26414;AC=3;AF=0.375;AN=8;AO=21;CIGAR=1X1M1X1M1X;DP=78;DPB=78;DPRA=0;EPP=48.6112;EPPR=126.784;GTI=0;LEN=1;MEANALT=1;MQM=43.0476;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.809524;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=844;QR=2226;RO=57;RPL=0;RPP=48.6112;RPPR=126.784;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:28:26,2:26:1023:2:81:0,-4.82463,-88.7685 0|1:13:4,9:4:160:9:359:-20.8138,0,-10.8706 0|1:22:14,8:14:543:8:323:-22.2048,0,-42.5902 0|1:15:13,2:13:500:2:81:-3.17028,0,-40.8296 dDocent_Contig_17509 24 . C A 127.229 . AB=0.5;ABP=3.0103;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=23;DPB=23;DPRA=1.53846;EPP=13.8677;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=191;QR=724;RO=18;RPL=0;RPP=13.8677;RPPR=42.0968;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:4:4,0:4:159:0:0:0,-1.20412,-14.6914 0/0:9:9,0:9:362:0:0:0,-2.70927,-32.9436 0/1:10:5,5:5:203:5:191:-14.5467,0,-15.6428 ./.:.:.:.:.:.:.:. dDocent_Contig_17510 10 . C T 235.23 . AB=0.294118;ABP=15.5282;AC=2;AF=0.25;AN=8;AO=10;CIGAR=1X;DP=103;DPB=103;DPRA=0.492754;EPP=24.725;EPPR=204.957;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=404;QR=3754;RO=93;RPL=0;RPP=24.725;RPPR=204.957;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=93;SRP=204.957;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:60:60,0:60:2423:0:0:0,-18.0618,-218.211 0/1:29:20,9:20:799:9:363:-24.3044,0,-63.4972 0/1:5:4,1:4:163:1:41:-2.58942,0,-13.5533 0/0:9:9,0:9:369:0:0:0,-2.70927,-33.5755 dDocent_Contig_17511 75 . T C 530.026 . AB=0.5;ABP=3.0103;AC=3;AF=0.5;AN=6;AO=17;CIGAR=1X;DP=32;DPB=32;DPRA=2.16667;EPP=39.9253;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=658;QR=508;RO=15;RPL=17;RPP=39.9253;RPPR=35.5824;RPR=0;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=15;SRP=35.5824;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:6:6,0:6:206:0:0:0,-1.80618,-18.8763 0/1:18:9,9:9:302:9:346:-26.0806,0,-22.0843 1/1:8:0,8:0:0:8:312:-28.4449,-2.40824,0 ./.:.:.:.:.:.:.:. dDocent_Contig_17512 115 . G A 4226.33 . AB=0.0432432;ABP=338.25;AC=5;AF=0.625;AN=8;AO=8;CIGAR=2X1M1X;DP=301;DPB=301;DPRA=1.11446;EPP=20.3821;EPPR=89.8692;GTI=0;LEN=1;MEANALT=4;MQM=24.25;MQMR=59.275;NS=4;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=0.925;PAO=0;PQA=0;PQR=0;PRO=0;QA=279;QR=1350;RO=40;RPL=0;RPP=20.3821;RPPR=89.8692;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=89.8692;SRR=40;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:122:15,82,1,23:15:516:82,1,23:2854,34,753:-162.824,0,-17.2733,-165.518,-40.1365,-207.137,-130.728,-5.40365,-170.827,-165.725 1|1:83:4,69,0,10:4:121:69,0,10:2378,0,346:-156.543,-11.076,0,-157.747,-20.7711,-167.416,-142.427,-5.51297,-152.096,-149.085 0|1:63:16,32,7,7:16:542:32,7,7:1154,245,250:-58.5578,0,-34.3796,-50.4043,-31.053,-92.2697,-53.7555,-34.4103,-84.7605,-95.6181 0|1:33:5,23,0,5:5:171:23,0,5:802,0,164:-50.106,0,-7.04151,-51.6111,-13.9652,-65.5027,-45.4604,-7.88015,-59.3506,-57.8454 dDocent_Contig_17513 84 . A G 222.586 . AB=0.5625;ABP=3.55317;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=34;DPB=34;DPRA=1.77778;EPP=22.5536;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=314;QR=847;RO=25;RPL=9;RPP=22.5536;RPPR=57.2971;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:7,9:7:223:9:314:-23.7814,0,-15.5661 0/0:6:6,0:6:206:0:0:0,-1.80618,-18.8766 0/0:12:12,0:12:418:0:0:0,-3.61236,-37.9539 ./.:.:.:.:.:.:.:. dDocent_Contig_17514 12 . A T 73.8181 . AB=0.375;ABP=4.09604;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=30;DPB=30;DPRA=1.09091;EPP=9.52472;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=120;QR=1076;RO=27;RPL=0;RPP=9.52472;RPPR=61.6401;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:8:5,3:5:204:3:120:-8.77966,0,-16.3358 0/0:12:12,0:12:479:0:0:0,-3.61236,-43.4574 0/0:4:4,0:4:164:0:0:0,-1.20412,-15.1499 0/0:6:6,0:6:229:0:0:0,-1.80618,-20.9712 dDocent_Contig_17515 98 . N A 298.078 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=9;CIGAR=1X;DP=9;DPB=9;DPRA=0;EPP=22.5536;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=313;QR=0;RO=0;RPL=9;RPP=22.5536;RPPR=0;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:5:0,5:0:0:5:173:-15.9102,-1.50515,0 1/1:3:0,3:0:0:3:105:-9.79616,-0.90309,0 1/1:1:0,1:0:0:1:35:-3.49863,-0.30103,0 ./.:.:.:.:.:.:.:. dDocent_Contig_17516 30 . G A 59.9715 . AB=0.1875;ABP=30.1537;AC=4;AF=0.5;AN=8;AO=11;CIGAR=1X;DP=54;DPB=54;DPRA=0;EPP=26.8965;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=26;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.813953;PAO=0;PQA=0;PQR=0;PRO=0;QA=426;QR=1690;RO=43;RPL=0;RPP=26.8965;RPPR=96.3836;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:75:-2.18288,-0.60206,0 0/1:29:24,5:24:939:5:194:-4.0118,0,-76.0881 0/0:20:17,3:17:671:3:116:0,-2.7565,-57.4583 0/1:3:2,1:2:80:1:41:-3.19148,0,-6.6887 dDocent_Contig_17517 36 . C T 45.3813 . AB=0.133333;ABP=38.0434;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=116;DPB=116;DPRA=1.04651;EPP=11.6962;EPPR=246.215;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=55.0893;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.946429;PAO=0;PQA=0;PQR=0;PRO=0;QA=162;QR=4440;RO=112;RPL=0;RPP=11.6962;RPPR=246.215;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=112;SRP=246.215;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:26,4:26:1022:4:162:-5.93606,0,-81.5165 0/0:38:38,0:38:1515:0:0:0,-11.4391,-133.697 0/0:19:19,0:19:739:0:0:0,-5.71957,-65.587 0/0:29:29,0:29:1164:0:0:0,-8.72987,-103.467 dDocent_Contig_17518 12 . A C 69.5691 . AB=0.119403;ABP=87.3088;AC=2;AF=0.25;AN=8;AO=11;CIGAR=1X;DP=128;DPB=128;DPRA=1.91228;EPP=26.8965;EPPR=257.073;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.991453;PAO=0;PQA=0;PQR=0;PRO=0;QA=448;QR=4702;RO=117;RPL=0;RPP=26.8965;RPPR=257.073;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=117;SRP=257.073;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:35:30,5:30:1211:5:205:-8.29896,0,-98.7244 0/1:32:29,3:29:1162:3:122:-1.73953,0,-95.2256 0/0:42:39,3:39:1556:3:121:0,-1.36306,-128.998 0/0:19:19,0:19:773:0:0:0,-5.71957,-69.8889 dDocent_Contig_17519 32 . A T 471.73 . AB=0.247191;ABP=52.4174;AC=4;AF=0.5;AN=8;AO=22;CIGAR=2X;DP=89;DPB=89;DPRA=0;EPP=50.7827;EPPR=148.499;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.136364;PAIREDR=0.731343;PAO=0;PQA=0;PQR=0;PRO=0;QA=868;QR=2597;RO=67;RPL=0;RPP=50.7827;RPPR=148.499;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=67;SRP=148.499;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:22:20,2:20:771:2:72:-0.212582,0,-63.085 0|1:28:17,11:17:666:11:446:-32.0673,0,-51.8426 0|1:20:15,5:15:578:5:201:-12.4505,0,-46.3351 0|1:19:15,4:15:582:4:149:-8.05136,0,-46.9969 dDocent_Contig_17521 14 . A G 974.485 . AB=0.443038;ABP=5.23675;AC=4;AF=0.5;AN=8;AO=35;CIGAR=1X;DP=79;DPB=79;DPRA=0;EPP=79.0118;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.685714;PAIREDR=0.590909;PAO=0;PQA=0;PQR=0;PRO=0;QA=1413;QR=1754;RO=44;RPL=0;RPP=79.0118;RPPR=98.5551;RPR=35;RUN=1;SAF=35;SAP=79.0118;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:18,13:18:720:13:527:-38.4446,0,-55.7919 0/1:19:14,5:14:562:5:199:-12.5688,0,-45.2033 0/1:22:9,13:9:355:13:525:-40.9733,0,-25.686 0/1:7:3,4:3:117:4:162:-12.8597,0,-8.80208 dDocent_Contig_17522 11 . T A 86.5043 . AB=0.176471;ABP=33.9218;AC=2;AF=0.25;AN=8;AO=6;CIGAR=1X;DP=53;DPB=53;DPRA=1.78947;EPP=16.0391;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.957447;PAO=0;PQA=0;PQR=0;PRO=0;QA=239;QR=1854;RO=47;RPL=0;RPP=16.0391;RPPR=105.07;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:21,4:21:831:4:159:-7.16569,0,-67.5748 0/0:7:7,0:7:282:0:0:0,-2.10721,-25.753 0/0:12:12,0:12:482:0:0:0,-3.61236,-43.7313 0/1:9:7,2:7:259:2:80:-4.88252,0,-20.9505 dDocent_Contig_17523 11 . T A 950.393 . AB=0.301887;ABP=39.1469;AC=2;AF=0.25;AN=8;AO=32;CIGAR=5M1X3M;DP=106;DPB=109;DPRA=0;EPP=72.4974;EPPR=105.07;GTI=0;LEN=1;MEANALT=2.25;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=0.875;PAIREDR=0.829787;PAO=0;PQA=0;PQR=0;PRO=0;QA=1275;QR=1821;RO=47;RPL=0;RPP=72.4974;RPPR=105.07;RPR=32;RUN=1;SAF=32;SAP=72.4974;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:21:15,0,4,2:15:587:0,4,2:0,153,79:-8.03158,-12.547,-60.8166,0,-48.2631,-47.0589,-6.04231,-54.3155,-41.762,-53.7134 0|0:39:17,0,12,10:17:652:0,12,10:0,466,398:-33.169,-38.2865,-91.7959,0,-53.5044,-49.8921,-5.51321,-59.0238,-20.7302,-56.0135 0|1:30:6,3,5,16:6:232:3,5,16:113,184,640:-50.9324,-43.4807,-61.6328,-37.7,-47.4967,-55.2491,0,-9.80352,-4.02406,-14.2466 0|1:16:9,0,3,4:9:350:0,3,4:0,112,158:-10.3042,-13.0135,-41.7784,-3.85296,-32.6119,-31.7088,0,-28.7747,-19.6088,-27.5706 dDocent_Contig_17524 11 . T A 778.082 . AB=0.0425532;ABP=515.57;AC=4;AF=0.5;AN=8;AO=12;CIGAR=1M1X6M;DP=282;DPB=279.75;DPRA=0;EPP=29.068;EPPR=371.266;GTI=0;LEN=1;MEANALT=4.25;MQM=60;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=0.916667;PAIREDR=0.872549;PAO=0;PQA=0;PQR=0;PRO=0;QA=476;QR=8026;RO=204;RPL=0;RPP=29.068;RPPR=445.991;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=195;SRP=371.266;SRR=9;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:78:58,8,2,3:58:2290:8,2,3:323,72,121:-9.0877,0,-186.023,-20.6776,-182.559,-208.502,-16.5726,-178.457,-199.13,-204.1 0|1:109:83,19,1,4:83:3272:19,1,4:754,37,155:-36.1513,0,-263.479,-58.1105,-266.172,-327.004,-48.4058,-256.467,-314.574,-316.396 0|1:61:43,11,5,1:43:1677:11,5,1:416,191,39:-20.2244,0,-134.534,-17.4947,-122.174,-153.844,-29.962,-134.639,-152.144,-167.514 0|1:34:20,9,0,4:20:787:9,0,4:332,0,161:-19.7428,0,-62.0209,-25.7634,-64.7301,-90.5152,-12.4819,-51.4601,-77.244,-76.0399 dDocent_Contig_17525 81 . C A 31.2617 . AB=0.25;ABP=7.35324;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X;DP=28;DPB=28;DPRA=1.2;EPP=7.35324;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=73;QR=992;RO=26;RPL=2;RPP=7.35324;RPPR=59.4686;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:8:6,2:6:233:2:73:-4.52306,0,-18.9318 0/0:12:12,0:12:461:0:0:0,-3.61236,-41.8392 0/0:7:7,0:7:270:0:0:0,-2.10721,-24.6653 0/0:1:1,0:1:28:0:0:0,-0.30103,-2.79973 dDocent_Contig_17526 11 . T A 717.405 . AB=0.642857;ABP=5.49198;AC=1;AF=0.125;AN=8;AO=9;CIGAR=1X2M1X;DP=58;DPB=58;DPRA=0;EPP=22.5536;EPPR=68.1545;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=365;QR=1175;RO=30;RPL=0;RPP=22.5536;RPPR=68.1545;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:12:6,0,6:6:230:0,6:0,240:-18.3615,-20.1677,-39.0322,0,-19.2558,-17.4496 0|1:14:3,9,2:3:121:9,2:365,72:-29.2347,0,-7.29087,-24.2735,-4.14485,-33.6452 0|0:10:8,0,2:8:310:0,2:0,82:-4.76938,-7.17762,-32.6276,0,-25.855,-25.2529 0|0:22:13,0,9:13:514:0,9:0,367:-26.7726,-30.686,-72.9745,0,-42.6908,-39.9815 dDocent_Contig_17527 48 . G A 418.421 . AB=0.395349;ABP=7.10075;AC=3;AF=0.375;AN=8;AO=18;CIGAR=1X;DP=58;DPB=58;DPRA=0;EPP=42.0968;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=696;QR=1598;RO=40;RPL=0;RPP=42.0968;RPPR=89.8692;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:15:14,1:14:552:1:39:0,-0.618885,-46.1248 0/1:23:11,12:11:447:12:476:-36.2662,0,-33.6624 0/1:14:11,3:11:436:3:112:-6.22999,0,-35.3803 0/1:6:4,2:4:163:2:69:-4.7434,0,-13.2522 dDocent_Contig_17528 55 . G A 37.6957 . AB=0.15;ABP=24.2907;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=37;DPB=37;DPRA=3.52941;EPP=9.52472;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=120;QR=1361;RO=34;RPL=3;RPP=9.52472;RPPR=76.8404;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:17,3:17:680:3:120:-5.1673,0,-55.5102 0/0:9:9,0:9:363:0:0:0,-2.70927,-33.0343 0/0:4:4,0:4:159:0:0:0,-1.20412,-14.692 0/0:4:4,0:4:159:0:0:0,-1.20412,-14.6917 dDocent_Contig_17529 160 . T C 475.77 . AB=0.473684;ABP=3.23888;AC=4;AF=0.5;AN=8;AO=18;CIGAR=1X;DP=38;DPB=38;DPRA=0;EPP=42.0968;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=714;QR=795;RO=20;RPL=18;RPP=42.0968;RPPR=46.4397;RPR=0;RUN=1;SAF=0;SAP=42.0968;SAR=18;SRF=0;SRP=46.4397;SRR=20;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:12,2:12:477:2:81:-3.47131,0,-39.0651 0/1:8:1,7:1:40:7:279:-23.0726,0,-1.58744 0/1:11:6,5:6:244:5:193:-14.4279,0,-19.0275 0/1:5:1,4:1:34:4:161:-13.3701,0,-1.89376 dDocent_Contig_17530 128 . G C 38.235 . AB=0.142857;ABP=34.0313;AC=2;AF=0.25;AN=8;AO=4;CIGAR=1X;DP=46;DPB=46;DPRA=1.55556;EPP=11.6962;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=147;QR=1415;RO=42;RPL=0;RPP=11.6962;RPPR=94.2121;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=94.2121;SRR=42;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:21,2:21:683:2:73:-0.0076093,0,-54.8503 0/0:17:17,0:17:592:0:0:0,-5.11751,-53.6068 0/1:5:3,2:3:105:2:74:-5.52073,0,-8.29101 0/0:1:1,0:1:35:0:0:0,-0.30103,-3.49863 dDocent_Contig_17532 100 . G A 119.077 . AB=0.15942;ABP=72.5289;AC=2;AF=0.25;AN=8;AO=11;CIGAR=1X;DP=145;DPB=145;DPRA=0.907895;EPP=26.8965;EPPR=293.988;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.545455;PAIREDR=0.932836;PAO=0;PQA=0;PQR=0;PRO=0;QA=393;QR=4884;RO=134;RPL=0;RPP=26.8965;RPPR=293.988;RPR=11;RUN=1;SAF=0;SAP=26.8965;SAR=11;SRF=0;SRP=293.988;SRR=134;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:57:57,0:57:2092:0:0:0,-17.1587,-188.539 0/0:19:19,0:19:703:0:0:0,-5.71957,-63.6027 0/1:57:48,9:48:1744:9:330:-12.8913,0,-140.081 0/1:12:10,2:10:345:2:63:-2.37041,0,-27.7665 dDocent_Contig_17533 22 . T G 4234.13 . AB=0.164609;ABP=240.434;AC=4;AF=0.5;AN=8;AO=40;CIGAR=1X5M1X;DP=243;DPB=243;DPRA=0;EPP=89.8692;EPPR=107.241;GTI=0;LEN=1;MEANALT=2.25;MQM=42.025;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.45;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1354;QR=1873;RO=48;RPL=0;RPP=89.8692;RPPR=107.241;RPR=40;RUN=1;SAF=40;SAP=89.8692;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:100:16,68,15:16:614:68,15:2682,528:-190.303,0,-29.9479,-154.578,-9.897,-200.464 0|1:77:16,46,15:16:631:46,15:1804,525:-122.59,0,-38.1018,-87.1339,-11.7047,-134.549 0|1:46:10,28,8:10:390:28,8:1085,245:-84.1091,0,-23.6827,-68.9873,-14.0049,-98.6356 0|1:20:6,12,2:6:238:12,2:481,56:-33.8092,0,-16.0775,-31.4623,-15.5556,-50.4628 dDocent_Contig_17534 22 . T C 367.051 . AB=0.204082;ABP=77.5494;AC=3;AF=0.375;AN=8;AO=22;CIGAR=2X;DP=130;DPB=130;DPRA=0;EPP=50.7827;EPPR=237.529;GTI=0;LEN=1;MEANALT=1;MQM=58.9091;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.227273;PAIREDR=0.472222;PAO=0;PQA=0;PQR=0;PRO=0;QA=866;QR=4284;RO=108;RPL=0;RPP=50.7827;RPPR=237.529;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=108;SRP=237.529;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:56:45,11:45:1768:11:445:-23.5486,0,-142.487 0|1:35:30,5:30:1218:5:183:-6.24673,0,-99.3544 0|0:32:30,2:30:1175:2:82:0,-1.85328,-98.2433 0|1:7:3,4:3:123:4:156:-12.3077,0,-9.35758 dDocent_Contig_17536 7 . A C 129.838 . AB=0.165289;ABP=120.754;AC=2;AF=0.25;AN=8;AO=29;CIGAR=1X;DP=192;DPB=192;DPRA=0;EPP=65.983;EPPR=352.617;GTI=0;LEN=1;MEANALT=1.5;MQM=33.9655;MQMR=56.1304;NS=4;NUMALT=1;ODDS=0;PAIRED=0.103448;PAIREDR=0.341615;PAO=0;PQA=0;PQR=0;PRO=0;QA=1107;QR=6127;RO=161;RPL=0;RPP=65.983;RPPR=352.617;RPR=29;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=161;SRP=352.617;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:50:40,9:40:1512:9:351:-12.885,0,-119.804 0/1:71:60,11:60:2304:11:406:-3.49323,0,-182.895 0/0:53:45,7:45:1708:7:272:0,-1.92478,-129.215 0/0:18:16,2:16:603:2:78:0,-1.34808,-43.8458 dDocent_Contig_17537 16 . T C 79.175 . AB=0.132075;ABP=65.3275;AC=1;AF=0.125;AN=8;AO=8;CIGAR=1X;DP=108;DPB=108;DPRA=2.85714;EPP=20.3821;EPPR=220.158;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.99;PAO=0;PQA=0;PQR=0;PRO=0;QA=321;QR=4031;RO=100;RPL=0;RPP=20.3821;RPPR=220.158;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=100;SRP=220.158;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:9:9,0:9:363:0:0:0,-2.70927,-33.0343 0/1:53:46,7:46:1862:7:280:-9.61647,0,-151.825 0/0:27:26,1:26:1040:1:41:0,-4.03324,-89.7966 0/0:19:19,0:19:766:0:0:0,-5.71957,-69.2616 dDocent_Contig_17538 27 . G C 227.435 . AB=0.263158;ABP=21.525;AC=2;AF=0.25;AN=8;AO=11;CIGAR=1X;DP=72;DPB=72;DPRA=1.16667;EPP=26.8965;EPPR=135.47;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.272727;PAIREDR=0.508197;PAO=0;PQA=0;PQR=0;PRO=0;QA=450;QR=2443;RO=61;RPL=0;RPP=26.8965;RPPR=135.47;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=61;SRP=135.47;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:18,8:18:719:8:327:-21.9733,0,-57.2111 0/0:18:17,1:17:691:1:41:0,-1.32397,-58.4243 0/1:12:10,2:10:391:2:82:-4.16732,0,-31.9323 0/0:16:16,0:16:642:0:0:0,-4.81648,-58.1141 dDocent_Contig_17540 150 . C A 62.8804 . AB=0.181818;ABP=22.3561;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1X;DP=23;DPB=23;DPRA=11;EPP=11.6962;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.947368;PAO=0;PQA=0;PQR=0;PRO=0;QA=155;QR=709;RO=19;RPL=4;RPP=11.6962;RPPR=44.2683;RPR=0;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=44.2683;SRR=19;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 0/1:10:7,3:7:270:3:116:-7.8074,0,-21.6552 0/0:1:1,0:1:39:0:0:0,-0.30103,-3.89656 0/1:12:11,1:11:400:1:39:-0.284205,0,-32.7257 dDocent_Contig_17541 20 . G T 278.265 . AB=0.416667;ABP=4.45795;AC=1;AF=0.125;AN=8;AO=10;CIGAR=1X;DP=79;DPB=79;DPRA=1.30909;EPP=24.725;EPPR=152.842;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.8696;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.985507;PAO=0;PQA=0;PQR=0;PRO=0;QA=401;QR=2747;RO=69;RPL=0;RPP=24.725;RPPR=152.842;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=69;SRP=152.842;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:14,10:14:553:10:401:-29.2243,0,-42.8582 0/0:44:44,0:44:1749:0:0:0,-13.2453,-157.63 0/0:3:3,0:3:122:0:0:0,-0.90309,-11.3725 0/0:8:8,0:8:323:0:0:0,-2.40824,-29.4381 dDocent_Contig_17544 9 . A C 405.368 . AB=0.228261;ABP=62.0177;AC=3;AF=0.375;AN=8;AO=21;CIGAR=1X;DP=117;DPB=117;DPRA=1.22667;EPP=48.6112;EPPR=16.0391;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=0;PAIREDR=0.28125;PAO=0;PQA=0;PQR=0;PRO=0;QA=806;QR=3736;RO=96;RPL=0;RPP=48.6112;RPPR=211.472;RPR=21;RUN=1;SAF=0;SAP=48.6112;SAR=21;SRF=60;SRP=16.0391;SRR=36;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:58:48,10:48:1882:10:386:-17.6372,0,-152.148 0/0:25:25,0:25:971:0:0:0,-7.52575,-87.6992 0/1:23:15,8:15:571:8:306:-20.9769,0,-44.8079 0/1:11:8,3:8:312:3:114:-7.32065,0,-25.1321 dDocent_Contig_17545 9 . A T 128.632 . AB=0.428571;ABP=3.63072;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1X;DP=104;DPB=104;DPRA=0.466667;EPP=16.0391;EPPR=215.815;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=205;QR=3737;RO=98;RPL=0;RPP=16.0391;RPPR=215.815;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=98;SRP=215.815;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:43:43,0:43:1647:0:0:0,-12.9443,-148.493 0/0:35:35,0:35:1342:0:0:0,-10.536,-121.067 0/0:12:12,0:12:457:0:0:0,-3.61236,-41.4789 0/1:14:8,6:8:291:6:205:-14.5621,0,-22.3217 dDocent_Contig_17547 46 . C A 41.8118 . AB=0.333333;ABP=4.45795;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X;DP=29;DPB=29;DPRA=0.782609;EPP=7.35324;EPPR=53.2759;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.925926;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=1077;RO=27;RPL=0;RPP=7.35324;RPPR=61.6401;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=26;SRP=53.2759;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:16:16,0:16:641:0:0:0,-4.81648,-58.0234 0/0:6:6,0:6:240:0:0:0,-1.80618,-21.976 0/1:6:4,2:4:156:2:81:-5.87955,0,-12.6095 0/0:1:1,0:1:40:0:0:0,-0.30103,-3.99568 dDocent_Contig_17548 14 . A C 857.502 . AB=0.432836;ABP=5.63551;AC=5;AF=0.625;AN=8;AO=31;CIGAR=1X;DP=69;DPB=69;DPRA=0;EPP=70.3259;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.193548;PAIREDR=0.736842;PAO=0;PQA=0;PQR=0;PRO=0;QA=1221;QR=1527;RO=38;RPL=0;RPP=70.3259;RPPR=85.5263;RPR=31;RUN=1;SAF=31;SAP=70.3259;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:10,13:10:399:13:516:-39.858,0,-29.3425 0/1:28:21,7:21:843:7:280:-17.1429,0,-67.754 0/1:16:7,9:7:285:9:353:-27.3126,0,-21.2079 1/1:2:0,2:0:0:2:72:-6.83432,-0.60206,0 dDocent_Contig_17549 1 . N G 76.8682 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:81:-7.68573,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_17550 79 . G C 81.1104 . AB=0.25;ABP=11.6962;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=41;DPB=41;DPRA=1.92;EPP=11.6962;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=155;QR=1360;RO=37;RPL=4;RPP=11.6962;RPPR=83.3548;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:12,4:12:439:4:155:-9.50896,0,-35.0373 0/0:7:7,0:7:257:0:0:0,-2.10721,-23.484 0/0:11:11,0:11:406:0:0:0,-3.31133,-36.8878 0/0:7:7,0:7:258:0:0:0,-2.10721,-23.5751 dDocent_Contig_17552 69 . T A 489.156 . AB=0.0612245;ABP=84.9501;AC=0;AF=0;AN=8;AO=3;CIGAR=11M1I23M1X4M;DP=103;DPB=100.308;DPRA=0;EPP=9.52472;EPPR=65.983;GTI=0;LEN=1;MEANALT=21;MQM=60;MQMR=60;NS=4;NUMALT=5;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=21;QR=993;RO=29;RPL=3;RPP=9.52472;RPPR=65.983;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:26:8,0,6,0,0,6:8:270:0,6,0,0,6:0,176,0,0,236:-17.067,-19.4752,-41.3801,-5.43246,-27.3491,-25.5429,-19.4752,-41.3801,-27.3491,-41.3801,-19.4752,-41.3801,-27.3491,-41.3801,-41.3801,0,-21.9365,-7.89156,-21.9365,-21.9365,-20.1304 0|0:49:14,3,0,3,0,9:14:484:3,0,3,0,9:21,0,97,0,352:-24.7812,-28.0241,-66.4784,-28.9957,-67.3815,-68.3556,-21.1626,-59.5537,-60.5272,-59.6241,-28.9957,-67.3815,-68.3556,-60.5272,-68.3556,0,-38.4128,-39.3861,-31.5545,-39.3861,-36.6768 0|0:10:3,0,0,1,0,0:3:102:0,0,1,0,0:0,0,33,0,0:-1.79223,-2.69532,-11.0206,-2.69532,-11.0206,-11.0206,0,-8.34004,-8.34004,-8.03901,-2.69532,-11.0206,-11.0206,-8.34004,-11.0206,-2.69532,-11.0206,-11.0206,-8.34004,-11.0206,-11.0206 0|0:18:4,0,0,0,4,1:4:137:0,0,0,4,1:0,0,0,164,40:-12.4023,-13.6065,-24.7521,-13.6065,-24.7521,-24.7521,-13.6065,-24.7521,-24.7521,-24.7521,0,-11.1726,-11.1726,-11.1726,-9.96845,-10.2987,-21.4487,-21.4487,-21.4487,-7.86328,-21.1477 dDocent_Contig_17553 62 . A C 268.357 . AB=0.37037;ABP=6.95112;AC=1;AF=0.125;AN=8;AO=12;CIGAR=1X;DP=83;DPB=83;DPRA=1.76667;EPP=29.068;EPPR=157.185;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.267606;PAO=0;PQA=0;PQR=0;PRO=0;QA=482;QR=2806;RO=71;RPL=12;RPP=29.068;RPPR=157.185;RPR=0;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=71;SRP=157.185;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:17,10:17:666:10:400:-28.2327,0,-52.1404 0/0:26:24,2:24:942:2:82:0,-0.0471021,-77.3053 0/0:24:24,0:24:963:0:0:0,-7.22472,-86.9727 0/0:6:6,0:6:235:0:0:0,-1.80618,-21.5196 dDocent_Contig_17554 34 . T C 2696.3 . AB=0.554878;ABP=7.30028;AC=4;AF=0.5;AN=8;AO=91;CIGAR=1X;DP=164;DPB=164;DPRA=0;EPP=200.614;EPPR=161.528;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3613;QR=2886;RO=73;RPL=0;RPP=200.614;RPPR=161.528;RPR=91;RUN=1;SAF=91;SAP=200.614;SAR=0;SRF=73;SRP=161.528;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:57:33,24:33:1324:24:969:-70.3482,0,-102.266 0/1:55:16,39:16:628:39:1528:-121.211,0,-40.2913 0/1:38:16,22:16:625:22:872:-67.3445,0,-45.1407 0/1:14:8,6:8:309:6:244:-18.1244,0,-23.9532 dDocent_Contig_17556 29 . A C 31.5117 . AB=0.117647;ABP=46.1843;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=76;DPB=76;DPRA=2.42857;EPP=11.6962;EPPR=159.356;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=160;QR=2784;RO=72;RPL=0;RPP=11.6962;RPPR=159.356;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=72;SRP=159.356;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:34:30,4:30:1159:4:160:-4.54878,0,-94.3567 0/0:27:27,0:27:1034:0:0:0,-8.12781,-93.3568 0/0:9:9,0:9:357:0:0:0,-2.70927,-32.4899 0/0:6:6,0:6:234:0:0:0,-1.80618,-21.4299 dDocent_Contig_17557 129 . G A 147.354 . AB=0;ABP=0;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=29;DPB=29;DPRA=0.416667;EPP=13.8677;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=40;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=164;QR=872;RO=24;RPL=0;RPP=13.8677;RPPR=55.1256;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=55.1256;SRR=24;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:19:19,0:19:693:0:0:0,-5.71957,-62.7001 0/0:5:5,0:5:179:0:0:0,-1.50515,-16.4595 1/1:5:0,5:0:0:5:164:-14.5592,-1.50515,0 ./.:.:.:.:.:.:.:. dDocent_Contig_17559 14 . G C 1507.5 . AB=0.701754;ABP=23.1631;AC=5;AF=0.625;AN=8;AO=49;CIGAR=1X;DP=66;DPB=66;DPRA=0;EPP=109.412;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1910;QR=663;RO=17;RPL=0;RPP=109.412;RPPR=39.9253;RPR=49;RUN=1;SAF=49;SAP=109.412;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:5,25:5:192:25:966:-78.218,0,-8.6187 0/1:19:10,9:10:393:9:354:-26.5021,0,-30.0093 1/1:9:0,9:0:0:9:352:-32.0418,-2.70927,0 0/1:8:2,6:2:78:6:238:-19.3863,0,-4.99506 dDocent_Contig_17560 209 . N G 221.574 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=6;CIGAR=1X;DP=6;DPB=6;DPRA=0;EPP=16.0391;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=8.76405;PAIRED=0.833333;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=242;QR=0;RO=0;RPL=6;RPP=16.0391;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:6:0,6:0:0:6:242:-22.1573,-1.80618,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_17562 24 . T A 36.3037 . AB=0.4;ABP=3.44459;AC=1;AF=0.125;AN=8;AO=2;CIGAR=1X;DP=28;DPB=28;DPRA=0.652174;EPP=7.35324;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.846154;PAO=0;PQA=0;PQR=0;PRO=0;QA=72;QR=1047;RO=26;RPL=0;RPP=7.35324;RPPR=59.4686;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:8:8,0:8:321:0:0:0,-2.40824,-29.2556 0/0:11:11,0:11:443:0:0:0,-3.31133,-40.2248 0/1:5:3,2:3:121:2:72:-5.32917,0,-9.77505 0/0:4:4,0:4:162:0:0:0,-1.20412,-14.9667 dDocent_Contig_17563 12 . G T 482.581 . AB=0.0882353;ABP=103.153;AC=1;AF=0.125;AN=8;AO=6;CIGAR=1M1X1M2X2M1X3M1X2M2X11M2X1M1X2M1X6M;DP=94;DPB=94;DPRA=0;EPP=16.0391;EPPR=72.4974;GTI=0;LEN=1;MEANALT=7.5;MQM=50;MQMR=60;NS=4;NUMALT=9;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=238;QR=1245;RO=32;RPL=0;RPP=16.0391;RPPR=72.4974;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:44:19,0,1,0,2,3,0,0,11,4:19:729:0,1,0,2,3,0,0,11,4:0,32,0,80,48,0,0,418,64:-28.5987,-34.3183,-94.1886,-32.0103,-91.8815,-91.5804,-34.3183,-94.1886,-91.8815,-94.1886,-27.9744,-87.8501,-85.5429,-87.8501,-87.2481,-31.7217,-91.5845,-89.2777,-91.5845,-85.2465,-90.6814,-34.3183,-94.1886,-91.8815,-94.1886,-87.8501,-91.5845,-94.1886,-34.3183,-94.1886,-91.8815,-94.1886,-87.8501,-91.5845,-94.1886,-94.1886,0,-59.9218,-57.6145,-59.9218,-53.5814,-57.3215,-59.9218,-59.9218,-56.6105,-30.8575,-90.7169,-88.4104,-90.7169,-84.3792,-88.116,-90.7169,-90.7169,-56.4556,-89.5128 0|1:24:3,0,6,0,4,1,2,4,0,3:3:120:0,6,0,4,1,2,4,0,3:0,225,0,158,16,10,76,0,48:-19.0338,-19.9369,-29.8428,-3.07423,-12.9944,-11.1882,-19.9369,-29.8428,-12.9944,-29.8428,-6.95321,-16.8688,0,-16.8688,-15.6647,-19.0691,-28.9753,-12.127,-28.9753,-16.001,-28.6742,-20.0681,-29.9729,-13.1285,-29.9729,-17.0004,-29.1068,-29.3708,-15.3923,-25.2997,-8.45087,-25.2997,-12.3236,-24.4343,-25.4365,-24.0956,-19.9369,-29.8428,-12.9944,-29.8428,-16.8688,-28.9753,-29.9729,-25.2997,-29.8428,-17.3353,-27.2417,-10.3944,-27.2417,-14.267,-26.3758,-27.3769,-22.7061,-27.2417,-26.3386 0|0:17:8,0,2,0,0,3,0,0,0,2:8:316:0,2,0,0,3,0,0,0,2:0,58,0,0,48,0,0,0,32:-1.69774,-4.10598,-30.2215,0,-26.1461,-25.544,-4.10598,-30.2215,-26.1461,-30.2215,-4.10598,-30.2215,-26.1461,-30.2215,-30.2215,-1.50032,-27.6322,-23.562,-27.6322,-27.6322,-26.7291,-4.10598,-30.2215,-26.1461,-30.2215,-30.2215,-27.6322,-30.2215,-4.10598,-30.2215,-26.1461,-30.2215,-30.2215,-27.6322,-30.2215,-30.2215,-4.10598,-30.2215,-26.1461,-30.2215,-30.2215,-27.6322,-30.2215,-30.2215,-30.2215,-2.36761,-28.4939,-24.4216,-28.4939,-28.4939,-25.9142,-28.4939,-28.4939,-28.4939,-27.8919 0|0:9:2,2,0,2,0,0,0,0,0,1:2:80:2,0,2,0,0,0,0,0,1:18,0,79,0,0,0,0,0,16:-5.97061,-6.10681,-12.1301,-6.57267,-12.7322,-13.2038,0,-6.19799,-6.66329,-6.06123,-6.57267,-12.7322,-13.2038,-6.66329,-13.2038,-6.57267,-12.7322,-13.2038,-6.66329,-13.2038,-13.2038,-6.57267,-12.7322,-13.2038,-6.66329,-13.2038,-13.2038,-13.2038,-6.57267,-12.7322,-13.2038,-6.66329,-13.2038,-13.2038,-13.2038,-13.2038,-6.57267,-12.7322,-13.2038,-6.66329,-13.2038,-13.2038,-13.2038,-13.2038,-13.2038,-5.71383,-11.8894,-12.3465,-5.80469,-12.3465,-12.3465,-12.3465,-12.3465,-12.3465,-12.0455 dDocent_Contig_17564 36 . C T 1236.22 . AB=0.419048;ABP=8.98702;AC=2;AF=0.25;AN=8;AO=44;CIGAR=1X;DP=173;DPB=173;DPRA=1.54412;EPP=98.5551;EPPR=280.959;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=0.992188;PAO=0;PQA=0;PQR=0;PRO=0;QA=1749;QR=5100;RO=128;RPL=0;RPP=98.5551;RPPR=280.959;RPR=44;RUN=1;SAF=44;SAP=98.5551;SAR=0;SRF=128;SRP=280.959;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:50:49,0:49:1951:0:0:0,-14.7505,-175.385 0/1:59:19,40:19:758:40:1587:-125.307,0,-50.7752 0/1:46:42,4:42:1663:4:162:-1.11937,0,-136.05 0/0:18:18,0:18:728:0:0:0,-5.41854,-65.8458 dDocent_Contig_17565 26 . G A 1055.17 . AB=0.350427;ABP=25.7458;AC=4;AF=0.5;AN=8;AO=41;CIGAR=1X;DP=117;DPB=117;DPRA=0;EPP=92.0407;EPPR=123.204;GTI=0;LEN=1;MEANALT=1.25;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=0.743243;PAO=0;PQA=0;PQR=0;PRO=0;QA=1624;QR=2901;RO=74;RPL=0;RPP=92.0407;RPPR=163.699;RPR=41;RUN=1;SAF=41;SAP=92.0407;SAR=0;SRF=69;SRP=123.204;SRR=5;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:15,14:15:575:14:546:-40.7517,0,-43.3562 0/1:50:32,16:32:1251:16:646:-43.6159,0,-97.9951 0/1:30:26,4:26:1034:4:154:-5.20145,0,-84.3223 0/1:8:1,7:1:41:7:278:-22.9825,0,-1.68633 dDocent_Contig_17566 44 . G A 66.048 . AB=0.2;ABP=18.6449;AC=1;AF=0.125;AN=8;AO=4;CIGAR=1X;DP=63;DPB=63;DPRA=1.39535;EPP=11.6962;EPPR=131.127;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=155;QR=2380;RO=59;RPL=0;RPP=11.6962;RPPR=131.127;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=59;SRP=131.127;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:18:18,0:18:726:0:0:0,-5.41854,-65.6661 0/0:19:19,0:19:768:0:0:0,-5.71957,-69.4412 0/1:20:16,4:16:641:4:155:-8.30376,0,-52.0014 0/0:6:6,0:6:245:0:0:0,-1.80618,-22.4295 dDocent_Contig_17567 11 . G C 3944.19 . AB=0.323671;ABP=58.9126;AC=2;AF=0.25;AN=8;AO=67;CIGAR=2M1X3M1X;DP=207;DPB=210;DPRA=0;EPP=148.499;EPPR=76.8404;GTI=0;LEN=1;MEANALT=3.5;MQM=60;MQMR=60;NS=4;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2633;QR=1328;RO=34;RPL=0;RPP=148.499;RPPR=76.8404;RPR=67;RUN=1;SAF=67;SAP=148.499;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:92:15,2,9,35,30:15:580:2,9,35,30:75,350,1369,1208:-159.971,-158.343,-205.377,-135.728,-177.22,-180.654,-51.9347,-93.4265,-70.8109,-89.0331,-64.922,-106.416,-83.7991,0,-103.528 1|0:68:10,3,0,28,27:10:390:3,0,28,27:107,0,1113,1059:-143.655,-137.947,-169.101,-146.665,-170.004,-178.723,-55.028,-78.3685,-87.0863,-78.6575,-59.586,-82.9255,-91.6431,0,-83.5153 0|0:26:4,0,0,2,20:4:160:0,0,2,20:0,0,80,786:-63.431,-64.6351,-77.8164,-64.6351,-77.8164,-77.8164,-58.0443,-71.2258,-71.2258,-70.6237,0,-13.1803,-13.1803,-6.59016,-7.15972 0|0:21:5,2,1,2,11:5:198:2,1,2,11:76,36,71,440:-34.7606,-30.0342,-45.7305,-33.3303,-43.397,-49.3274,-30.4871,-40.5534,-43.8491,-46.1825,0,-10.0793,-13.3768,-10.5348,-13.0006 dDocent_Contig_17568 8 . A G 818.635 . AB=0.307018;ABP=39.8872;AC=4;AF=0.5;AN=8;AO=35;CIGAR=1X;DP=114;DPB=114;DPRA=0;EPP=79.0118;EPPR=174.557;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.828571;PAIREDR=0.810127;PAO=0;PQA=0;PQR=0;PRO=0;QA=1357;QR=3035;RO=79;RPL=0;RPP=79.0118;RPPR=174.557;RPR=35;RUN=1;SAF=35;SAP=79.0118;SAR=0;SRF=79;SRP=174.557;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:45:30,15:30:1137:15:577:-38.7253,0,-89.0792 0/1:31:21,10:21:812:10:390:-26.1268,0,-64.0735 0/1:23:19,4:19:736:4:156:-7.4936,0,-59.6475 0/1:15:9,6:9:350:6:234:-16.9157,0,-27.3459 dDocent_Contig_17570 157 . T A 538.764 . AB=0.728814;ABP=29.8409;AC=5;AF=0.625;AN=8;AO=54;CIGAR=1X;DP=70;DPB=70;DPRA=0;EPP=120.27;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=15.9074;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2061;QR=609;RO=16;RPL=0;RPP=120.27;RPPR=37.7539;RPR=54;RUN=1;SAF=0;SAP=120.27;SAR=54;SRF=0;SRP=37.7539;SRR=16;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:11:0,11:0:0:11:425:-12.119,-3.31133,0 0/1:28:8,20:8:307:20:768:-23.7296,0,-19.5612 0/1:20:6,14:6:223:14:522:-18.295,0,-14.4047 0/1:11:2,9:2:79:9:346:-5.12985,0,-4.1863 dDocent_Contig_17572 7 . A G 1150.75 . AB=0.56044;ABP=5.89764;AC=4;AF=0.5;AN=8;AO=51;CIGAR=1X;DP=91;DPB=91;DPRA=0;EPP=113.755;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1.25;MQM=55.5686;MQMR=54.9231;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1706;QR=1498;RO=39;RPL=0;RPP=113.755;RPPR=87.6977;RPR=51;RUN=1;SAF=51;SAP=113.755;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:10,21:10:385:21:694:-50.3038,0,-25.6749 0/1:26:15,11:15:573:11:392:-25.9054,0,-40.2147 0/1:19:7,11:7:269:11:391:-29.8897,0,-18.9283 0/1:15:7,8:7:271:8:229:-16.3739,0,-19.353 dDocent_Contig_17573 12 . A G 126.757 . AB=0.175;ABP=39.7082;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X;DP=98;DPB=98;DPRA=2.06897;EPP=18.2106;EPPR=200.614;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.648352;PAO=0;PQA=0;PQR=0;PRO=0;QA=286;QR=3572;RO=91;RPL=0;RPP=18.2106;RPPR=200.614;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=91;SRP=200.614;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:40:33,7:33:1299:7:286:-14.0736,0,-105.139 0/0:13:13,0:13:525:0:0:0,-3.91339,-47.5976 0/0:23:23,0:23:895:0:0:0,-6.92369,-80.8552 0/0:22:22,0:22:853:0:0:0,-6.62266,-77.0835 dDocent_Contig_17575 20 . T C 110.634 . AB=0.333333;ABP=6.62942;AC=2;AF=0.25;AN=8;AO=5;CIGAR=1X;DP=34;DPB=34;DPRA=0.789474;EPP=13.8677;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=202;QR=1167;RO=29;RPL=0;RPP=13.8677;RPPR=65.983;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:9,4:9:359:4:161:-10.9619,0,-28.7581 0/0:13:13,0:13:526:0:0:0,-3.91339,-47.6859 0/1:2:1,1:1:41:1:41:-3.49251,0,-3.49251 0/0:6:6,0:6:241:0:0:0,-1.80618,-22.0663 dDocent_Contig_17577 32 . A T 444.262 . AB=0.316667;ABP=20.5268;AC=3;AF=0.375;AN=8;AO=19;CIGAR=1X;DP=101;DPB=101;DPRA=0.487805;EPP=44.2683;EPPR=181.071;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=742;QR=3235;RO=82;RPL=0;RPP=44.2683;RPPR=181.071;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=82;SRP=181.071;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:41:41,0:41:1602:0:0:0,-12.3422,-144.418 0/1:43:30,13:30:1199:13:510:-33.2988,0,-95.2446 0/1:7:3,4:3:114:4:150:-11.7557,0,-8.52389 0/1:10:8,2:8:320:2:82:-4.76938,0,-26.1565 dDocent_Contig_17578 119 . A G 819.511 . AB=0.102564;ABP=56.5176;AC=5;AF=0.625;AN=8;AO=4;CIGAR=1X6M2X3M1X;DP=79;DPB=79;DPRA=0;EPP=11.6962;EPPR=68.1545;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=4;NUMALT=4;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=140;QR=1118;RO=30;RPL=0;RPP=11.6962;RPPR=68.1545;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=68.1545;SRR=30;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:18:5,3,6,0,2:5:187:3,6,0,2:109,199,0,67:-14.6006,-7.1918,-21.6237,0,-6.4287,-13.5322,-16.1057,-22.5268,-15.3383,-31.4339,-10.6776,-17.1005,-9.91342,-26.0083,-25.4062 1|1:28:2,1,22,3,0:2:74:1,22,3,0:32,740,105,0:-61.8266,-59.851,-65.6064,-2.47839,-5.96952,-1.9189,-53.8838,-57.363,0,-59.0375,-62.4287,-65.9074,-8.54156,-59.9406,-68.485 0|1:22:16,0,5,0,0:16:596:0,5,0,0:0,169,0,0:-9.09831,-13.9148,-62.761,0,-49.065,-47.5599,-13.9148,-62.761,-49.065,-62.761,-13.9148,-62.761,-49.065,-62.761,-62.761 0|1:11:7,0,2,1,0:7:261:0,2,1,0:0,70,35,0:-3.65823,-5.76544,-27.1924,0,-21.4945,-20.8925,-2.89438,-24.3436,-18.6451,-24.0426,-5.76544,-27.1924,-21.4945,-24.3436,-27.1924 dDocent_Contig_17581 81 . T C 62.0167 . AB=0.3;ABP=6.48466;AC=1;AF=0.125;AN=8;AO=3;CIGAR=1X;DP=46;DPB=46;DPRA=0.833333;EPP=9.52472;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.860465;PAO=0;PQA=0;PQR=0;PRO=0;QA=117;QR=1602;RO=43;RPL=3;RPP=9.52472;RPPR=96.3836;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:19:19,0:19:723:0:0:0,-5.71957,-65.3951 0/1:10:7,3:7:257:3:117:-7.90008,0,-20.469 0/0:16:16,0:16:583:0:0:0,-4.81648,-52.792 0/0:1:1,0:1:39:0:0:0,-0.30103,-3.89656 dDocent_Contig_17582 10 . A T 397.1 . AB=0.235294;ABP=54.7424;AC=4;AF=0.5;AN=8;AO=20;CIGAR=1X2M;DP=85;DPB=85;DPRA=0;EPP=46.4397;EPPR=126.784;GTI=0;LEN=1;MEANALT=1.75;MQM=59.7;MQMR=60;NS=4;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=772;QR=2275;RO=57;RPL=0;RPP=46.4397;RPPR=126.784;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:21:6,3,4,8:6:231:3,4,8:120,162,306:-23.2771,-15.1963,-33.2555,-11.7205,-20.7958,-29.4796,0,-9.06914,-5.59309,-16.5475 0|1:33:25,1,0,7:25:1005:1,0,7:41,0,277:-15.3986,-21.0033,-103.528,-22.9243,-103.829,-105.764,0,-81.0339,-82.9674,-80.8602 0|1:24:21,0,0,3:21:838:0,0,3:0,0,111:-3.12789,-9.44952,-78.4905,-9.44952,-78.4905,-78.4905,0,-69.4143,-69.4143,-68.5112 0|1:7:5,0,0,2:5:201:0,0,2:0,0,78:-5.29626,-6.80141,-23.3743,-6.80141,-23.3743,-23.3743,0,-16.966,-16.966,-16.3639 dDocent_Contig_17583 46 . C T 833.338 . AB=0.351648;ABP=20.4059;AC=4;AF=0.5;AN=8;AO=32;CIGAR=1X;DP=91;DPB=91;DPRA=0;EPP=72.4974;EPPR=131.127;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.9375;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1296;QR=2370;RO=59;RPL=0;RPP=72.4974;RPPR=131.127;RPR=32;RUN=1;SAF=32;SAP=72.4974;SAR=0;SRF=59;SRP=131.127;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:34:19,15:19:773:15:609:-44.9131,0,-59.6544 0/1:27:17,10:17:674:10:405:-28.6828,0,-52.8608 0/1:27:21,6:21:842:6:241:-13.9374,0,-67.9664 0/1:3:2,1:2:81:1:41:-3.19148,0,-6.78264 dDocent_Contig_17585 10 . A T 2201.41 . AB=0.702128;ABP=36.3678;AC=5;AF=0.625;AN=8;AO=70;CIGAR=1X;DP=98;DPB=98;DPRA=0;EPP=155.013;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=59.2286;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2809;QR=1123;RO=28;RPL=0;RPP=155.013;RPPR=63.8115;RPR=70;RUN=1;SAF=70;SAP=155.013;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:39:5,34:5:205:34:1355:-110.38,0,-7.09484 0/1:27:8,19:8:322:19:775:-61.7531,0,-21.2205 0/1:28:15,13:15:596:13:521:-38.8054,0,-45.5455 1/1:4:0,4:0:0:4:158:-14.6005,-1.20412,0 dDocent_Contig_17587 60 . C T 152.543 . AB=0.2;ABP=14.7363;AC=3;AF=0.375;AN=8;AO=6;CIGAR=1X;DP=67;DPB=67;DPRA=0.367347;EPP=16.0391;EPPR=135.47;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=227;QR=2407;RO=61;RPL=6;RPP=16.0391;RPPR=135.47;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=61;SRP=135.47;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:29:29,0:29:1120:0:0:0,-8.72987,-101.08 0/0:20:20,0:20:800:0:0:0,-6.0206,-72.3145 0/1:15:12,3:12:487:3:118:-6.48613,0,-39.6658 1/1:3:0,3:0:0:3:109:-10.166,-0.90309,0 dDocent_Contig_17588 1 . N G 220.985 . AB=0.4;ABP=3.44459;AC=4;AF=1;AN=4;AO=6;CIGAR=1X4M;DP=9;DPB=9;DPRA=0;EPP=16.0391;EPPR=0;GTI=0;LEN=1;MEANALT=1.5;MQM=38;MQMR=0;NS=2;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=169;QR=0;RO=0;RPL=0;RPP=16.0391;RPPR=0;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. 1|1:5:0,3,2:0:0:3,2:102,32:-10.131,-1.87641,-0.973322,-8.46672,0,-7.86466 1|1:4:0,0,4:0:0:0,4:0,137:-12.6193,-12.6193,-12.6193,-1.20412,-1.20412,0 .:.:.:.:.:.:.:. dDocent_Contig_17589 29 . C A 349.436 . AB=0.166667;ABP=43.5445;AC=1;AF=0.125;AN=8;AO=7;CIGAR=1X1M1X;DP=49;DPB=49;DPRA=2;EPP=5.80219;EPPR=59.4686;GTI=0;LEN=1;MEANALT=2;MQM=25.1429;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=0.285714;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=249;QR=1029;RO=26;RPL=0;RPP=18.2106;RPPR=59.4686;RPR=7;RUN=1;SAF=2;SAP=5.80219;SAR=5;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:14:5,4,5:5:198:4,5:148,191:-13.2412,-6.23151,-21.342,0,-7.8669,-14.8608 1|0:4:0,2,2:0:0:2,2:67,78:-8.58518,-6.80072,-6.19866,-2.04904,0,-1.44698 0|0:24:16,1,7:16:637:1,7:34,274:-17.9324,-21.8251,-73.9806,0,-51.7548,-50.5877 0|0:7:5,0,1:5:194:0,1:0,41:0,-1.50515,-17.5601,-1.53103,-17.4597,-17.1587 dDocent_Contig_17590 25 . A T 377.288 . AB=0.223529;ABP=59.443;AC=3;AF=0.375;AN=8;AO=19;CIGAR=1X;DP=98;DPB=98;DPRA=2.17949;EPP=44.2683;EPPR=174.557;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=751;QR=3128;RO=79;RPL=0;RPP=44.2683;RPPR=174.557;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=79;SRP=174.557;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:39:26,13:26:1023:13:510:-34.5019,0,-80.6238 0/1:36:32,4:32:1271:4:159:-3.85375,0,-103.816 0/1:10:8,2:8:310:2:82:-4.76938,0,-25.2491 0/0:13:13,0:13:524:0:0:0,-3.91339,-47.5057 dDocent_Contig_17591 39 . G T 116.39 . AB=0.357143;ABP=5.49198;AC=2;AF=0.25;AN=8;AO=5;CIGAR=1X;DP=58;DPB=58;DPRA=0.318182;EPP=13.8677;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=205;QR=2094;RO=53;RPL=0;RPP=13.8677;RPPR=118.098;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:22:22,0:22:868:0:0:0,-6.62266,-78.428 0/0:22:22,0:22:881:0:0:0,-6.62266,-79.5989 0/1:11:7,4:7:267:4:164:-11.8386,0,-21.0732 0/1:3:2,1:2:78:1:41:-3.19148,0,-6.49969 dDocent_Contig_17592 27 . T C 153.261 . AB=0;ABP=0;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1X;DP=16;DPB=16;DPRA=0.666667;EPP=11.6962;EPPR=29.068;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=164;QR=476;RO=12;RPL=0;RPP=11.6962;RPPR=29.068;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=12;SRP=29.068;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:6:6,0:6:235:0:0:0,-1.80618,-21.5205 0/0:6:6,0:6:241:0:0:0,-1.80618,-22.0661 1/1:4:0,4:0:0:4:164:-15.1499,-1.20412,0 ./.:.:.:.:.:.:.:. dDocent_Contig_17593 1 . N A 176.1 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=3;CIGAR=1X1M11I2M;DP=5;DPB=18.75;DPRA=1.5;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=2;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=114;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. 1|1:2:0,2,0:0:0:2,0:78,0:-7.07481,-0.60206,0,-7.07481,-0.60206,-7.07481 1|1:3:0,0,3:0:0:0,3:0,114:-10.2325,-10.2325,-10.2325,-0.90309,-0.90309,0 dDocent_Contig_17594 10 . A G 84.1102 . AB=0.126984;ABP=79.1497;AC=1;AF=0.125;AN=8;AO=10;CIGAR=1X;DP=225;DPB=225;DPRA=1.29592;EPP=24.725;EPPR=469.877;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=401;QR=8592;RO=215;RPL=0;RPP=24.725;RPPR=469.877;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=215;SRP=469.877;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:77:77,0:77:3100:0:0:0,-23.1793,-279.066 0/0:64:62,2:62:2482:2:82:0,-11.4862,-215.744 0/1:63:55,8:55:2190:8:319:-10.11,0,-178.313 0/0:21:21,0:21:820:0:0:0,-6.32163,-74.1129 dDocent_Contig_17595 112 . A C 462.857 . AB=0.423077;ABP=5.68288;AC=4;AF=0.5;AN=8;AO=22;CIGAR=1X;DP=52;DPB=52;DPRA=0;EPP=50.7827;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=755;QR=1065;RO=30;RPL=0;RPP=50.7827;RPPR=68.1545;RPR=22;RUN=1;SAF=0;SAP=50.7827;SAR=22;SRF=0;SRP=68.1545;SRR=30;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:3:2,1:2:70:1:35:-2.59554,0,-5.74431 0/1:16:7,9:7:249:9:312:-23.5997,0,-17.9392 0/1:25:15,10:15:531:10:338:-23.2219,0,-40.5977 0/1:8:6,2:6:215:2:70:-4.23916,0,-17.2909 dDocent_Contig_17596 106 . N A 66.4848 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=2X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=70;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. 1|1:2:0,2:0:0:2:70:-6.6474,-0.60206,0 .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. dDocent_Contig_17597 8 . A C 293.871 . AB=0.5;ABP=3.0103;AC=1;AF=0.125;AN=8;AO=5;CIGAR=2X;DP=48;DPB=48;DPRA=1.33333;EPP=13.8677;EPPR=76.8404;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.823529;PAO=0;PQA=0;PQR=0;PRO=0;QA=193;QR=1305;RO=34;RPL=0;RPP=13.8677;RPPR=76.8404;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:13:13,0,0:13:500:0,0:0,0:0,-3.91339,-45.3483,-3.91339,-45.3483,-45.3483 0|1:10:3,5,2:3:117:5,2:193,76:-14.9518,0,-8.11844,-9.62359,-3.39454,-18.6407 0|0:23:16,0,7:16:611:0,7:0,271:-17.8326,-22.6491,-72.7766,0,-50.5127,-48.4055 0|0:2:2,0,0:2:77:0,0:0,0:0,-0.60206,-7.30914,-0.60206,-7.30914,-7.30914 dDocent_Contig_17598 31 . C T 495.795 . AB=0.25;ABP=52.9542;AC=4;AF=0.5;AN=8;AO=23;CIGAR=1X;DP=92;DPB=92;DPRA=0;EPP=52.9542;EPPR=152.842;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=920;QR=2784;RO=69;RPL=0;RPP=52.9542;RPPR=152.842;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=69;SRP=152.842;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:24,6:24:978:6:239:-12.8536,0,-79.2842 0/1:43:36,7:36:1440:7:279:-12.5369,0,-116.901 0/1:8:1,7:1:41:7:280:-23.1624,0,-1.68633 0/1:11:8,3:8:325:3:122:-8.06116,0,-26.3077 dDocent_Contig_17599 160 . G C 52.4433 . AB=0.140351;ABP=67.0497;AC=2;AF=0.25;AN=8;AO=9;CIGAR=1X;DP=86;DPB=86;DPRA=2.27273;EPP=22.5536;EPPR=129.604;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.948052;PAO=0;PQA=0;PQR=0;PRO=0;QA=314;QR=2625;RO=77;RPL=9;RPP=22.5536;RPPR=129.604;RPR=0;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=170.214;SRR=77;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:18:17,1:17:561:1:35:0,-1.91991,-47.3032 0/1:26:22,4:22:735:4:140:-5.11815,0,-58.6312 0/1:31:27,4:27:942:4:139:-3.52076,0,-75.7643 0/0:11:11,0:11:387:0:0:0,-3.31133,-35.1651 dDocent_Contig_17600 154 . T C 30.9993 . AB=0.25;ABP=7.35324;AC=1;AF=0.25;AN=4;AO=2;CIGAR=1X;DP=24;DPB=24;DPRA=0.5;EPP=7.35324;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=47;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=814;RO=22;RPL=0;RPP=7.35324;RPPR=50.7827;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=50.7827;SRR=22;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 0/0:16:16,0:16:589:0:0:0,-4.81648,-53.3404 0/1:8:6,2:6:225:2:81:-5.09959,0,-18.2011 ./.:.:.:.:.:.:.:. dDocent_Contig_17602 73 . G A 267.038 . AB=0.521739;ABP=3.10471;AC=2;AF=0.25;AN=8;AO=12;CIGAR=1X;DP=32;DPB=32;DPRA=2.55556;EPP=29.068;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=402;QR=658;RO=20;RPL=12;RPP=29.068;RPPR=46.4397;RPR=0;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:10,7:10:308:7:232:-16.0873,0,-22.903 0/0:5:5,0:5:174:0:0:0,-1.50515,-16.002 0/0:4:4,0:4:139:0:0:0,-1.20412,-12.8527 0/1:6:1,5:1:37:5:170:-13.8287,0,-1.89165 dDocent_Contig_17603 11 . A G 162.289 . AB=0.188679;ABP=47.6279;AC=4;AF=0.5;AN=8;AO=10;CIGAR=1X;DP=53;DPB=53;DPRA=0;EPP=24.725;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.953488;PAO=0;PQA=0;PQR=0;PRO=0;QA=400;QR=1717;RO=43;RPL=0;RPP=24.725;RPPR=96.3836;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:10,1:10:405:1:40:-0.684349,0,-33.4987 0/1:15:9,6:9:358:6:238:-17.2776,0,-28.0671 0/1:18:16,2:16:640:2:81:-2.26719,0,-52.5137 0/1:9:8,1:8:314:1:41:-1.3853,0,-25.9112 dDocent_Contig_17605 27 . G C 858.889 . AB=0.213333;ABP=56.5443;AC=1;AF=0.125;AN=8;AO=16;CIGAR=1X1M1X;DP=75;DPB=75;DPRA=0;EPP=37.7539;EPPR=68.1545;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=4;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.933333;PAO=0;PQA=0;PQR=0;PRO=0;QA=639;QR=1162;RO=30;RPL=0;RPP=37.7539;RPPR=68.1545;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:19:7,5,7:7:244:5,7:193,272:-20.2416,-6.49992,-24.8078,0,-3.94563,-17.704 0|0:18:10,1,7:10:402:1,7:40,283:-20.326,-20.0417,-52.868,0,-29.8355,-31.0232 1|0:23:6,8,9:6:242:8,9:324,366:-35.154,-10.2445,-27.7833,-6.76981,0,-24.0081 0|0:15:7,2,6:7:274:2,6:82,239:-17.5652,-12.9014,-34.8237,0,-15.7415,-20.7076 dDocent_Contig_17606 62 . A G 199.565 . AB=0.347826;ABP=7.63648;AC=2;AF=0.25;AN=8;AO=8;CIGAR=1X;DP=54;DPB=54;DPRA=0.741935;EPP=20.3821;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.5;PAIREDR=0.695652;PAO=0;PQA=0;PQR=0;PRO=0;QA=311;QR=1837;RO=46;RPL=8;RPP=20.3821;RPPR=102.898;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:25:25,0:25:996:0:0:0,-7.52575,-89.9391 0/1:13:12,1:12:479:1:41:-0.181177,0,-39.5467 0/1:10:3,7:3:121:7:270:-21.6538,0,-8.2699 0/0:6:6,0:6:241:0:0:0,-1.80618,-22.0658 dDocent_Contig_17607 199 . G T 1165.49 . AB=0.627907;ABP=9.12072;AC=5;AF=0.625;AN=8;AO=39;CIGAR=1X;DP=55;DPB=55;DPRA=0;EPP=87.6977;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1483;QR=610;RO=16;RPL=39;RPP=87.6977;RPPR=37.7539;RPR=0;RUN=1;SAF=0;SAP=87.6977;SAR=39;SRF=0;SRP=37.7539;SRR=16;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:12:0,12:0:0:12:444:-40.301,-3.61236,0 0/1:8:3,5:3:117:5:191:-15.1499,0,-8.50214 0/1:27:7,20:7:265:20:770:-61.5006,0,-16.0823 0/1:8:6,2:6:228:2:78:-4.99523,0,-18.4752 dDocent_Contig_17608 151 . C A 338.68 . AB=0.290909;ABP=23.8959;AC=3;AF=0.375;AN=8;AO=16;CIGAR=1X;DP=65;DPB=65;DPRA=1.83333;EPP=37.7539;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=609;QR=1928;RO=49;RPL=0;RPP=37.7539;RPPR=109.412;RPR=16;RUN=1;SAF=0;SAP=37.7539;SAR=16;SRF=0;SRP=109.412;SRR=49;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:40:30,10:30:1164:10:398:-24.136,0,-92.9962 0/0:10:10,0:10:402:0:0:0,-3.0103,-36.539 0/1:7:5,2:5:201:2:50:-2.63868,0,-16.3633 0/1:8:4,4:4:161:4:161:-12.467,0,-12.4667 dDocent_Contig_17609 107 . N T 161.036 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=7;CIGAR=1X;DP=7;DPB=7;DPRA=0;EPP=18.2106;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=24.8571;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=228;QR=0;RO=0;RPL=0;RPP=18.2106;RPPR=0;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:69:-4.66202,-0.60206,0 1/1:3:0,3:0:0:3:103:-6.85707,-0.90309,0 1/1:2:0,2:0:0:2:56:-4.10647,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_17610 44 . T G 726.06 . AB=0.675676;ABP=12.9286;AC=3;AF=0.375;AN=8;AO=25;CIGAR=1X;DP=45;DPB=45;DPRA=1.54167;EPP=57.2971;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=0.68;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=979;QR=797;RO=20;RPL=0;RPP=57.2971;RPPR=46.4397;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:3:1,2:1:41:2:67:-5.45658,0,-3.19148 0/1:19:4,15:4:149:15:600:-48.6187,0,-8.04868 0/1:15:7,8:7:286:8:312:-23.9217,0,-21.5994 0/0:8:8,0:8:321:0:0:0,-2.40824,-29.257 dDocent_Contig_17611 75 . T A 55.42 . AB=0.3;ABP=6.48466;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=2X1M1X1M1X;DP=32;DPB=32;DPRA=0.909091;EPP=9.52472;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=108;QR=962;RO=29;RPL=3;RPP=9.52472;RPPR=65.983;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=65.983;SRR=29;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. 0|1:10:7,3:7:239:3:108:-7.06487,0,-18.8339 0|0:7:7,0:7:235:0:0:0,-2.10721,-21.4793 0|0:15:15,0:15:488:0:0:0,-4.51545,-44.2329 dDocent_Contig_17612 108 . C T 70.9533 . AB=0.322034;ABP=19.2411;AC=3;AF=0.375;AN=8;AO=20;CIGAR=1X;DP=74;DPB=74;DPRA=0;EPP=46.4397;EPPR=120.27;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=344;QR=1750;RO=54;RPL=0;RPP=46.4397;RPPR=120.27;RPR=20;RUN=1;SAF=0;SAP=46.4397;SAR=20;SRF=0;SRP=120.27;SRR=54;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:15:14,1:14:461:1:19:0,-2.61548,-39.9067 0/1:30:21,9:21:659:9:178:-7.18618,0,-50.5741 0/1:25:17,8:17:562:8:100:-1.59906,0,-43.3688 0/1:4:2,2:2:68:2:47:-3.26053,0,-5.25376 dDocent_Contig_17613 15 . C T 340.032 . AB=0.333333;ABP=11.6962;AC=5;AF=0.625;AN=8;AO=14;CIGAR=1X;DP=38;DPB=38;DPRA=0;EPP=33.4109;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=533;QR=953;RO=24;RPL=0;RPP=33.4109;RPPR=55.1256;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:5,5:5:200:5:193:-14.731,0,-15.3687 0/1:18:16,2:16:648:2:70:-1.22858,0,-53.2326 0/1:8:3,5:3:105:5:189:-14.9662,0,-7.38335 1/1:2:0,2:0:0:2:81:-7.68573,-0.60206,0 dDocent_Contig_17614 23 . G A 49.6796 . AB=0.666667;ABP=3.73412;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=28;DPB=28;DPRA=0.24;EPP=7.35324;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.807692;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=1041;RO=26;RPL=0;RPP=7.35324;RPPR=59.4686;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:15:15,0:15:605:0:0:0,-4.51545,-54.7882 0/0:10:10,0:10:395:0:0:0,-3.0103,-35.904 0/1:3:1,2:1:41:2:81:-6.78264,0,-3.19148 ./.:.:.:.:.:.:.:. dDocent_Contig_17616 51 . C A 252.531 . AB=0.6;ABP=4.31318;AC=2;AF=0.25;AN=8;AO=9;CIGAR=1X;DP=45;DPB=45;DPRA=0.5;EPP=22.5536;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=360;QR=1415;RO=36;RPL=9;RPP=22.5536;RPPR=81.1833;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:17:17,0:17:657:0:0:0,-5.11751,-59.4591 0/0:13:13,0:13:517:0:0:0,-3.91339,-46.8756 0/1:11:4,7:4:163:7:279:-22.1694,0,-11.7471 0/1:4:2,2:2:78:2:81:-6.48161,0,-6.19918 dDocent_Contig_17617 135 . T G 376.032 . AB=0.378378;ABP=7.76406;AC=2;AF=0.25;AN=8;AO=14;CIGAR=1X;DP=74;DPB=74;DPRA=1;EPP=33.4109;EPPR=133.299;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=4;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=571;QR=2386;RO=60;RPL=0;RPP=33.4109;RPPR=133.299;RPR=14;RUN=1;SAF=0;SAP=33.4109;SAR=14;SRF=0;SRP=133.299;SRR=60;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:19,9:19:749:9:367:-24.9664,0,-59.302 0/1:9:4,5:4:163:5:204:-16.0348,0,-12.3492 0/0:28:28,0:28:1126:0:0:0,-8.42884,-101.623 0/0:9:9,0:9:348:0:0:0,-2.70927,-31.6732